LOCUS       DATCGC010000001         1481 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_332962, whole genome shotgun sequence.
ACCESSION   DATCGC010000001 DATCGC010000000
VERSION     DATCGC010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1481)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1481)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1481
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_332962"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1454)
                     /locus_tag="VIJ87_00005"
     CDS             complement(<1..1454)
                     /locus_tag="VIJ87_00005"
                     /inference="COORDINATES: protein motif:HMM:NF017984.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0036297 - interstrand cross-link repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crosslink repair DNA glycosylase YcaQ family
                     protein"
                     /protein_id="HEY5442871.1"
                     /translation="MDAEDLLTAIFPDQVACAENLGGGEREIPSHPLVDQTVKDCLEE
                     AMDIDGLEKLLTSIERNEKHLFARDVIEASPLSQEILNARPYAYLDDAPLEERRTRAV
                     FQRRWLDPQQASDMGKLDQAAIDRVRDEVWPEPRNADELHDALVELGFITEQEGASWQ
                     QYFDELKSDRRAAVLVTSIDLQSVPNQKAAHRLWIAAERLPQLSVIYPNANLEPLIAA
                     PESVSRYEWKFEDALVEIIRGRLEGLGPVTVGTLVEQSGLNKLEIETALLKLEAEGFV
                     IRGIFSPGATETEWSARRLLARIHSYTLNRLRQEIEPVSSSDFVRFMLAWQKLAPEHQ
                     MEGPESVRAIIEQLEGFEAPAAAWEGELLPSRLVEYDPSWLDALCLSGEVVWARLTPP
                     LRAGSDNDRPRSGAPVRNTPIALLRRKNFGLWSSVFPSSSSNLKEADFSTTTQVVFSY
                     LSSRGASFFTDIAENTKLLRSQVEESLGELVANGV"
BASE COUNT          344 a          407 c          376 g          354 t
ORIGIN      
        1 acgccattgg ccaccagttc accaagcgat tcctcaacct ggctgcgcag tagctttgtg
       61 ttttcggcga tgtcagtaaa aaacgaagca ccccgggatg aaaggtacga aaaaacaact
      121 tgcgtcgtcg tcgagaagtc ggcttctttc aagttcgagg acgaggaagg aaacacagaa
      181 ctccaaagcc caaaattctt ccgacgcaga agcgctatcg gtgtgtttcg gacgggcgct
      241 ccacttcgtg gacgatcgtt atcggatccc gcgcgtaacg gtggtgtcag tctcgcccac
      301 accacttcgc cggacaggca caaggcatcg agccatgaag gatcgtattc aaccagtcga
      361 ctcggtagca gttcaccttc ccaagcagcc gctggagctt caaagccttc aagctgttcg
      421 atgattgctc gcacactttc cgggccttcc atctggtgct cgggagccag cttttgccag
      481 gccaacatga atcgaacaaa gtctgagctt gataccggct cgatctcctg gcgcagacga
      541 ttgagcgtgt aactgtgaat gcgagccagc agacggcgcg cgctccattc agtctcagtg
      601 gctcctggag aaaagatccc gcgaatgaca aaaccttctg cttccaattt caagagagcg
      661 gtttcaatct ccagtttgtt taatcccgat tgttcgacta acgtcccaac agttactgga
      721 cccaacccct caagtcgtcc tcggattatt tctaccagcg catcttcaaa cttccattcg
      781 taacgcgaga cgctttccgg agcggcgatt aggggttcaa ggttggcgtt cggataaatg
      841 acgctgagtt ggggaagacg ttcagcggcg atccacagac gatgagcagc tttctgattg
      901 ggtacagact gaaggtctat gctagtcacc agcaccgccg cacgacggtc gctttttagt
      961 tcgtcgaagt attgttgcca agaagcgcct tcttgttccg tgatgaatcc gagttcaact
     1021 aaggcatcgt ggagttcgtc ggcattcctg ggctcgggcc aaacctcgtc acgtactcga
     1081 tcaatcgccg cttgatcgag tttacccatg tcgctcgctt gttgcggatc caaccagcgg
     1141 cgctgaaaca ctgcacgtgt tcgacgttct tcaagtggag catcgtcgag atatgcgtaa
     1201 ggtctggcgt tcaagatttc ctgcgagagt ggagaggctt caatcacatc tcgcgcaaac
     1261 aagtgtttct catttcgttc gatggacgtg agcaacttct cgagtccatc gatatccatc
     1321 gcttcttcaa gacagtcttt cacagtttga tcgacaagcg gatgtgaagg gatctcgcgc
     1381 tcaccgccgc caagattttc cgcacacgca acctgatccg gaaagattgc cgtcagaaga
     1441 tcctcggcat ccatacgctg taattgagca ggaatcttct t
//
LOCUS       DATCGC010000002         2270 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_366257, whole genome shotgun sequence.
ACCESSION   DATCGC010000002 DATCGC010000000
VERSION     DATCGC010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2270)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2270)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2270
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_366257"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            234..1655
                     /locus_tag="VIJ87_00010"
     CDS             234..1655
                     /locus_tag="VIJ87_00010"
                     /inference="COORDINATES: protein motif:HMM:NF020133.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase family protein"
                     /protein_id="HEY5442872.1"
                     /translation="MLPDTKTFIDTIRSNVSFFNTNEEVIITRAPGRLDVMGGVADYS
                     GSLVLQLPIADATHVALQKSDLTRLHVLSLGIEARSIEFDLSEFLNVDNEPIGYDQAR
                     QRFATPTYHWAAYIAGVFLVLMRERGVHFTHGARILISSNVPEGKGVSSSAALEVAVM
                     LGVAAAFEIELAPTEGARLCQKVENLVAGAPCGIMDQMTAACGEQNQLLELLCQPDLL
                     KGTLALPIELKLWGIDSGVRHSVSGSDYGTVRTAAFMGYRIIADDLPKRSANVSGRVE
                     IDDSRWHGYLANITPDEFETSYRNVLPERMTGEEFLDRYQGITDNVTSVEPSIEYPIL
                     QATKHPIYENARVQSFASILKNWEGVEQGKELGALMFESHQSYSNCGLGSEATDLIAD
                     LVRGALDDGLFGARITGGGSGGTVAVLGRSDAEQAITKLTQDFQERTGYKPLVITGSS
                     PGAVIFGHLKLDLSGNEVSTTTR"
     gene            1983..>2270
                     /locus_tag="VIJ87_00015"
     CDS             1983..>2270
                     /locus_tag="VIJ87_00015"
                     /inference="COORDINATES: protein motif:HMM:NF013431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442873.1"
                     /translation="MKLTRSFSFLLFVVVLLLGILSTNAQKISKESFGKTADGESVDL
                     FTLTNRNGMEARITNYGGIVTTLTAPDRNNKYADVVLGFNDLDSYLKGHPYF"
BASE COUNT          556 a          580 c          606 g          528 t
ORIGIN      
        1 agatctcaga tctttgagcc tgcgaagcga gcgaaagcgc acggttgggt ttcgtggatg
       61 tgattacgcg tcgatatgag atctaaaaga gtgagagtag aacgatcagc tgtcgcccgc
      121 ttcgcgggct cgcgaatgac gcggcaacta acctggggct gacgcccaag gctttacgct
      181 aacgcccgct tcgcgggcta acaactcttc gcaaactaac gactcttgcg caagtgctgc
      241 ctgacacaaa aaccttcatc gatacgattc ggtcgaacgt ctctttcttc aatacgaacg
      301 aagaggtaat catcacgcgc gcaccgggca ggcttgatgt gatgggcggt gtcgccgact
      361 attctggttc actcgtgttg caactcccaa tcgctgacgc aacacacgtc gcacttcaaa
      421 aatcagactt aacccgtctt catgttttaa gtcttggtat cgaagcgcgc tcgattgaat
      481 tcgatctttc cgagttcttg aacgttgaca acgaacctat cggatacgac caggctcgac
      541 aacgattcgc tactcccacg taccactggg ctgcgtacat tgcaggcgtc ttcctcgttc
      601 tcatgcgaga gagaggcgtg cactttaccc acggcgctcg catcctgatt tcatcgaatg
      661 ttccggaggg caagggtgtt agttcgtcag cagctctcga agtagctgtg atgctaggcg
      721 tcgctgctgc ctttgaaatt gaactggcgc caacagaagg cgctcgtttg tgtcagaagg
      781 ttgaaaacct cgtggcgggc gcaccttgcg gcatcatgga ccaaatgaca gccgcttgtg
      841 gtgaacaaaa tcaactgctt gagttattgt gtcaacccga tctgctcaaa ggcaccctgg
      901 cacttccgat cgaacttaag ctctggggta ttgattccgg tgttcgtcac tccgtgagtg
      961 gttctgacta cggaacggtt cgcaccgcgg ccttcatggg ttatcgaatc atcgctgacg
     1021 atctgccaaa gcgatcggca aacgtttcgg gaagggtcga gatagacgat tcgcgatggc
     1081 atggatacct ggcgaacatt acgcccgatg agtttgaaac aagttatcga aacgtgcttc
     1141 ccgaacggat gacgggtgaa gagtttctag atcgatatca agggatcact gataacgtaa
     1201 cctctgtcga gccgagtatt gaatacccga ttctccaggc gacgaagcat cccatttatg
     1261 aaaatgcgcg cgtgcagtcg ttcgcttcga ttctgaaaaa ctgggaagga gtcgagcagg
     1321 ggaaagaact aggtgccctc atgtttgagt cgcaccagag ctattcaaac tgtggacttg
     1381 gttcagaagc tactgacttg atcgcagatc tcgttcgagg ggcacttgat gatggactct
     1441 tcggtgcgag gatcactggg ggaggtagcg gcggaactgt cgccgtgctc ggtcgtagcg
     1501 atgccgagca agcgatcacg aaactcaccc aagactttca ggaacgaacc ggatacaagc
     1561 cactagtgat tacaggatcg tctccgggcg ccgttatctt tggacatttg aaacttgatt
     1621 tgagtggcaa tgaggtcagt accacaacgc ggtagagctg tcgagaaatc tggacgagtc
     1681 cacagattgt ggcagattta gccaaaaagg cgctcatgca ctatcaattg cttcgcggct
     1741 gtgccgcctc ccgtgcggaa agcctcaggc tttccggccg ctccttaaaa aaggagaggc
     1801 ttcgcctcag gcggcgtagc cgccaagaga atcgtgggct tgacggaaag ccagaggctt
     1861 tccgcacggg agacggcata gccgcataac catcgcaaag actttcgatg agccacacgc
     1921 taccgcgttg tggtactgac ttaatcgcca actccgtctg actcttgaaa aggaaaaacc
     1981 caatgaagct caccagaagt ttttcgttcc tgctctttgt tgtcgtgtta ctactcggga
     2041 tcttaagtac caacgctcaa aagatctcga aggaaagttt tggaaaaacc gcggacggtg
     2101 aaagcgtcga tctgtttacg ctaactaatc ggaacggcat ggaagccagg atcactaact
     2161 atggcggcat cgtgacgaca cttaccgcac ctgatcggaa caacaagtac gccgacgttg
     2221 tgcttggctt taacgacctt gatagctacc taaaaggtca tccttatttc
//
LOCUS       DATCGC010000003         2295 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_366263, whole genome shotgun sequence.
ACCESSION   DATCGC010000003 DATCGC010000000
VERSION     DATCGC010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2295)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2295)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2295
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_366263"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..502
                     /locus_tag="VIJ87_00020"
     CDS             <1..502
                     /locus_tag="VIJ87_00020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442874.1"
                     /translation="GNTGPRQWDKLHSWTEDESTKYFSGVATYARDINVPAEMVQKGL
                     AVQLDFGKGIPLTVQPSRNGMQTWLEGPIREAAVVYINDKRVGSVFCPPYSIDVGAFL
                     KPGANKVRIEVANTALNYMAGHSLPDYRLLNLRYGERFQAQDMDKIQVLPSGLLGPIR
                     LIPQAR"
     gene            623..2044
                     /locus_tag="VIJ87_00025"
     CDS             623..2044
                     /locus_tag="VIJ87_00025"
                     /inference="COORDINATES: protein motif:HMM:NF013080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase"
                     /protein_id="HEY5442875.1"
                     /translation="MLRTKLFSVISIAAVLLYSFPANPRLPVATAAQKPKYNVLFIAS
                     DDLRPTLGTYGNTIVKTPNIDKLASQGVRFDRAYAQYPLCNPSRSSLLTGKYPTQTSI
                     LDNEYYFRALHPELVSLTQHFKANGYATLRSGKVFHGGIDDTDSWTEGGEAREFTGAK
                     RPPSNPDSADRTSQSDRIVTLEGDGESNGDYKAATRAIEFLNKYKDQPFFLAFGPAKP
                     HSPPTAPKKFFDLYDADKIPLPPDFAPRPAAPAGFPEISIARRNTDLFIGRDASPAQA
                     REMIRAYYASVSFMDAQVGRVIDELDRLKLREKTIIVFFGDHGYHLGEKGKWSKAYSL
                     FDIAIRVPLIIAIPNGKPGASPRTVGLLDLFPTLVEFCGLPQPYKAPSKLEGNSLIPL
                     LRNPNAKWNHPAFSVVQYGGKIGFSVRTERWHYVQWEHGALGEMLLDSVNDPFELKNL
                     ASDPAYAKTVTEMRKLLMQIPAQ"
     gene            2081..>2295
                     /locus_tag="VIJ87_00030"
     CDS             2081..>2295
                     /locus_tag="VIJ87_00030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442876.1"
                     /translation="MLEPQASRLTALLWYDHVPVDGCSRVFGGTEYNRQAGHPWSQRK
                     RSNFISRALHGKVENPTHGSAGIVQVRP"
BASE COUNT          550 a          604 c          607 g          534 t
ORIGIN      
        1 cggcaacacc ggaccacgtc agtgggacaa acttcattca tggactgaag acgagtcaac
       61 gaaatacttt tctggtgttg caacttacgc gagggacatc aacgtaccgg cggagatggt
      121 tcagaaggga cttgctgtcc aattggattt tggtaaaggc attccgttaa cagttcaacc
      181 gagtcggaat gggatgcaaa catggttgga aggtccaatt cgtgaagccg ccgtggtcta
      241 cattaatgac aagcgcgtgg gttcagtctt ttgtcctccg tactcgatcg atgtcggcgc
      301 gttcttgaag ccgggtgcca acaaagttcg gattgaagtt gcgaacaccg cgctgaacta
      361 catggccggg cacagcctgc cagactatcg attgcttaac ttgcgatacg gtgaaagatt
      421 ccaagcgcaa gacatggaca agatccaggt gttgccatca ggactgcttg gtccgattcg
      481 attgattcca caagcgcgtt agtttttgga gtgcggtggc ccggcaccgc tttggtattg
      541 aacgttctga agagtcgaca gctgtaacaa agcggtgccg gaccaccgca ctccaaggag
      601 gcgtcctaag gtgattaata caatgcttag aacgaaacta ttcagcgtca tttcaatagc
      661 agcggtgctg ctgtactcgt ttcccgccaa cccacgacta cctgtcgcaa cggccgcgca
      721 gaaaccgaag tacaacgttc tcttcattgc cagtgatgat cttcgtccga cactgggaac
      781 ctatggcaat acaatcgtaa agacgcccaa tatcgacaag cttgcttcgc aaggtgtcag
      841 atttgatcgc gcgtatgcgc agtacccgct ttgcaatcct tcgcgatcct ccttgttgac
      901 ggggaagtat ccgactcaaa caagcatcct cgataacgag tactacttcc gcgcgctgca
      961 tccggaactg gtttccctga cacagcattt caaggccaac ggttatgcga cactgcgctc
     1021 cggcaaagtt tttcatggcg ggatcgacga cacagacagt tggaccgaag gcggtgaggc
     1081 aagggagttc accggggcca agcgaccacc ttcaaatccg gatagtgcgg accgtacgtc
     1141 gcagtctgat cgcatagtca cacttgaagg cgacggtgag agcaacgggg attacaaggc
     1201 cgccactcgc gccattgagt ttctcaacaa gtacaaagat cagcctttct ttttagcgtt
     1261 cggtcctgcg aagccacata gcccgccgac ggcgccaaag aaattctttg atctttacga
     1321 cgccgacaag atcccattac ctccagactt cgctccccgg cccgctgcgc ccgctggttt
     1381 tccggagatt tcgattgcgc gcagaaatac cgacctcttc attggtcgcg atgcctcgcc
     1441 cgctcaagcg cgcgaaatga ttcgtgctta ctatgcatcc gtcagtttta tggatgcaca
     1501 ggtcggacgt gtgatcgatg aactggatcg tctgaagtta cgagagaaaa caatcatcgt
     1561 gttttttggt gaccatggtt accacctggg tgaaaaaggg aagtggtcga aagcgtattc
     1621 attgttcgac atagctattc gcgtccccct catcatcgcg atacctaatg gtaagccggg
     1681 tgcgagtcca cgaaccgtgg gattgctcga tctgttccca acgttggttg aattttgtgg
     1741 tttgccgcaa ccttataaag ccccgtccaa gctcgaaggt aatagcctga ttccgttgtt
     1801 gcgcaatcca aatgctaagt ggaaccatcc agctttcagt gtggttcagt acgggggcaa
     1861 gattggattc tcggttcgaa ccgaacgctg gcactatgtc cagtgggaac acggtgctct
     1921 cggagaaatg ttgctcgaca gtgtcaacga tccatttgaa ctgaaaaacc tggcgtctga
     1981 tccagcctac gcaaagaccg taacggagat gagaaaactc ttaatgcaga ttcccgcaca
     2041 gtaatccgtt actcgcctaa ctgaatgaac ccgagcgctt gtgttggaac cacaggcgtc
     2101 tcgcctgact gcgctcttgt ggtacgacca cgttccggtt gatggatgct cccgggtatt
     2161 tggtggtact gagtacaaca ggcaggcggg acacccgtgg tcccagcgca agcgctcgaa
     2221 ctttatatcc agggctttgc acggaaaagt cgagaatccc acgcacggca gtgcggggat
     2281 tgttcaggtc cgacc
//
LOCUS       DATCGC010000004         1705 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_233088, whole genome shotgun sequence.
ACCESSION   DATCGC010000004 DATCGC010000000
VERSION     DATCGC010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1705)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1705)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1705
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_233088"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..555)
                     /gene="prs"
                     /locus_tag="VIJ87_00035"
     CDS             complement(<1..555)
                     /gene="prs"
                     /locus_tag="VIJ87_00035"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate diphosphokinase"
                     /protein_id="HEY5442877.1"
                     /translation="MGTTGGIKVFSGNANPKLAEEICRQLSCDMGKAFPERFSDGEFN
                     FQIDENVRGGDVFLVQPTCPPTDAHLMELLVMLDAFRRSSAERITAVIPYYGYGRSDK
                     KDRPRVPISAKLVANLIAVAGADRLLVLDLHAAQIQGFFDIPVDHLYAAPVFIGYYQE
                     HPMDNLTVVAPDTGGAERARAYAKR"
     gene            complement(662..736)
                     /locus_tag="VIJ87_00040"
     tRNA            complement(662..736)
                     /locus_tag="VIJ87_00040"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(702..704),aa:Gln,seq:ttg)
     gene            complement(727..>1705)
                     /gene="ispE"
                     /locus_tag="VIJ87_00045"
     CDS             complement(727..>1705)
                     /gene="ispE"
                     /locus_tag="VIJ87_00045"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: protein motif:HMM:TIGR00154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050515 - 4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase activity
                     [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HEY5442878.1"
                     /translation="NDSLSYRITVSDSSLTLPSYAKINWGLRIIGKRPDGFHEINTTL
                     QTVSLHDDLMFTLRDDDELVLQCDVASIPTDATNLIIRAAAALNKRAKVRLGADISLT
                     KRIPAKGGLGGASSNAALTLLALNRLWQLELDGSELNRIARELGSDVPFFLIGGSAQG
                     SGTGTEISTLPDVTKAYLIIITPNAEVSTAAAYAALNAASLTTQRSVSILSSSFAEPG
                     FSDCDPSALNNDFEGVIFEIEPEIRRAKLALLESGAQGGLLAGSGSSVFGIFANVGER
                     ERALAALKCEQGWRVFSCETISRNEYSKSLIHLGSRYLRSLNFQTDTGA"
BASE COUNT          438 a          450 c          414 g          403 t
ORIGIN      
        1 gcgttttgca taagcacgtg cgcgttccgc accacccgta tccggagcaa caacggtcaa
       61 attgtccatc ggatgttcct ggtaataacc gatgaacacc ggggccgcgt aaaggtggtc
      121 gacaggaata tcaaagaacc cctggatctg cgccgcgtga aggtccaaca ccagtaggcg
      181 gtcggcacct gctactgcaa tcaggttagc aaccagcttg gccgagattg gtactcgcgg
      241 acggtccttc ttgtctgaac gcccataacc gtaataagga attacggcgg ttattctctc
      301 ggccgatgat cgacgaaatg catcgagcat caccagcaat tccatcagat gcgcgtcggt
      361 cggtggacaa gtcggctgaa ccaggaatac atcgccgccg cgaacgtttt cgtcaatctg
      421 aaagttgaat tcaccatcag agaaacgttc ggggaacgcc ttccccatgt cacaactcag
      481 ttggcgacaa atctcttccg ccaactttgg attcgcattt ccggaaaaga cctttatgcc
      541 gcctgttgtg cccatagttt cattgttgat gtccgatatg ctttagcttg tcgaagacgt
      601 tcttaggaaa cctctttgcc acgaacgaca agctgaagca tatcgaacat tgctcaatat
      661 ttggctgggg cgggtggatt cgaaccaacg aatgccggtt ccaaagaccg gtgccttacc
      721 acttggctac gccccagtat ctgtttgaaa gttaagagag cgtaaatagc gggaaccaag
      781 atgaatcaag cttttggagt actcgttccg tgaaatcgtc tcgcacgaaa atactcgcca
      841 cccttgttca catttcagag ctgctaaagc ccgttctctt tcgcctacat tagcaaagat
      901 accgaacacg ctcgagccgc ttccagccaa caaaccgccc tgcgcacctg attcaagcaa
      961 tgccaacttg gcacgcctga tttcaggttc tatctcaaag atcactcctt caaaatcatt
     1021 gtttagagca cttggatcac aatcgctaaa accaggctcc gcgaaggaac ttgaaagaat
     1081 agagaccgac ctctgagttg tcaaggaagc ggcattaaga gctgcgtacg cggcggcagt
     1141 ggaaacttcc gcgttgggtg tgatgattat caggtaggcc ttagtaacgt ctgggagtgt
     1201 tgaaatctca gtacccgttc ccgacccctg cgcggaacca ccgatcagga agaaaggaac
     1261 atccgatccg agttctcgag cgatgcgatt aagttcactc ccatcaagct caagctgcca
     1321 aagtcgattt aaggctaaca gcgtgagggc agcgtttgac gacgccccac caagcccgcc
     1381 ttttgctgga attcgttttg ttaaactgat gtcggcacca agtctaacct tcgcccgttt
     1441 atttaacgca gcagcagcac gaataatgag gtttgtcgca tcggttggaa tgcttgctac
     1501 gtcgcattgc agcactagct cgtcatcatc acgcaacgtg aacatcaggt cgtcatgaag
     1561 cgatacggtt tgcagggtcg tattgatctc atgaaaacca tcgggtcgct taccaattat
     1621 gcgcagaccc caattaatct tggcgtatga aggaagtgtt agggacgaat cggacaccgt
     1681 tattcgataa ctcagactgt cattg
//
LOCUS       DATCGC010000005         4381 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_199884, whole genome shotgun sequence.
ACCESSION   DATCGC010000005 DATCGC010000000
VERSION     DATCGC010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4381)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4381)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4381
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199884"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2354)
                     /locus_tag="VIJ87_00050"
     CDS             complement(<1..2354)
                     /locus_tag="VIJ87_00050"
                     /EC_number="2.7.10.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045226 - extracellular polysaccharide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis tyrosine autokinase"
                     /protein_id="HEY5442879.1"
                     /translation="MKPTQELIIRRDSEPAALDRPSDRVPLNYNYGVDPNAETEVHLL
                     DYWRAIRKRLWLIISIVLLVSMLTVVYVSRKPDIFEAKARVQVNLEDNNPANGVPVLY
                     GSTDDPVYFNTQLQILVSSGLIRRVVRTLDLEHNPEFLNANASQKRSTWQSVLQTLGV
                     KKEQPVENKNVDQLPLTTTVADASSRENLNEAKRLAPFVGAILGGLDVEPVKENRGFL
                     KETRLIDISFQHTDPQVAAKVVNSVAETYIYSNLEKNTQTMSGTGDFLAKRIAELQEN
                     IRTSEERLVNYAKNNKIVSLDANQNTVMERLAGLNRQLLEAENDRKSAEAALNATKAP
                     GAASAMIDAETKQAGDLEGKLAELRQKRAQLLASDATEEAPEVKEVDGQITELDQQIK
                     DLKSHKSTTLLTNLTTRYRQTLERENLLRKAFEEQRSETLTQNEAAINYRIIQQEIET
                     NKTMLNGLLQRSKENDVVRAGKSNNISIVDYALTPDGPVGPNRTRTVFVSIFLALGLG
                     VGLSLFLEYLDDTVRSTEDVERLLHLPALAVIPAVGGSVKRKVLAGSKALQKRNGNGA
                     SSNAELLMNVDSRSPLAESYRHLRTSVLLSTAGRAPKSLLVTSSLPGEGKTTTAVNTS
                     YSLAQTGASVVIIDADMRRPRLQSIFGMRGQLGLSSILSSDVTDEEMLAMISRDENSG
                     LNILTAGPIPPNPAELLGSDQMRRLLVTLQKHFTHVVVDSPPVTSFTDGVLISTMVDG
                     VLLVVHGGKSSRHVVRRSRQLLQDVGAKIFGVVLNNTEIQSHDY"
     gene            complement(2379..3371)
                     /locus_tag="VIJ87_00055"
     CDS             complement(2379..3371)
                     /locus_tag="VIJ87_00055"
                     /inference="COORDINATES: protein motif:HMM:NF014606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015774 - polysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HEY5442880.1"
                     /translation="MARFKLSSLLLMPLSIIVFVAVCFAQQPTTNVAAVNAATSVTKT
                     SDDDRYRIGPGDVLDIRVYNRPNISREGVRVEGNGMFRMPLLESEVQAACKTEGELAK
                     ELSTKYAKYYKNLQVDVFIKEYHSKQVAIIGAVNEQSRFELQRRVRLLELLTYARGPS
                     AKAGQTINIVHSTAPSLCRQDSDDEIAAFSSYKLSDTMVGDPKSNPYIEAGDIVTLPD
                     ADQVYVVGNVYTPLTIPLKEPITLSRAVAMAGGAKQDTKKDKIRIVRQEPGSMAKKEM
                     IVDLSAIEKKQADDVALMPNDIIDVPLSTGKSLLRGIVMGGAQSVTQLPIRVIP"
     gene            complement(3423..3731)
                     /locus_tag="VIJ87_00060"
     CDS             complement(3423..3731)
                     /locus_tag="VIJ87_00060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442881.1"
                     /translation="MNTSKVNDKQLAKQVAKKKKRKKKTALIVCRDRKQFWTTQTQFW
                     QWVREGVVEKTGDQPLTGLFRRQHEELLVLLSNTILNLAHPNHMREALLSRRIGISGK
                     "
     gene            complement(3922..>4381)
                     /locus_tag="VIJ87_00065"
     CDS             complement(3922..>4381)
                     /locus_tag="VIJ87_00065"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEY5442882.1"
                     /translation="ARSLMTLTGIRSASTVRRGLEGLLVKGSIEKNGHKNGNNRREQA
                     HAYCCYFPHEVISRRQEAGGAALTPHVLGSNTGNGNHTFDRAIARVAENGMLSRREAQ
                     VALCCVEGLTNAQIGKRLSVSEQTVKFHLRHIFVKFSVKRRAELISRLLM"
BASE COUNT          970 a         1151 c         1067 g         1193 t
ORIGIN      
        1 tagtaatcgt gcgattgaat ctcagtattg ttcagaacaa cgccgaaaat ctttgcgccg
       61 acgtcctgga gcaactgccg cgaacgacgc acaacgtgac gcgaactctt tcctccatgg
      121 accacgagca acacgccatc aaccattgtt gaaatcaaca caccgtcggt aaaggaagta
      181 actggcggag aatcaaccac gacgtgcgtg aagtgtttct gcaaagtgac caggagacga
      241 cgcatctgat ccgaacccaa caattctgct ggattaggtg gaataggtcc tgcggttaaa
      301 atattcaatc cgctattctc gtcccttgaa atcatcgcca acatttcttc gtcggtcacg
      361 tcgctcgaaa gaattgagct aagaccaagc tgcccgcgca ttccgaaaat cgactgcaag
      421 cgaggtcgtc gcatgtctgc gtcgatgatc acaacgctcg ccccggtttg cgcaagactg
      481 taggaagtat tcactgccgt cgtcgtcttt ccttcacccg gcaaactcga cgtgaccagt
      541 agagattttg gcgctcgtcc ggctgttgat aacagaaccg aggtgcgcag gtggcgatag
      601 gattcagcta aaggagaacg actatcgaca ttcatcaaaa gctctgcgtt gctacttgcc
      661 ccgttgccgt tacgtttctg caacgccttc gaacctgcga gtacctttct cttaactgat
      721 ccgcccaccg ccggaatgac tgccaacgcc ggcaagtgca atagtcgttc gacgtcttcc
      781 gttgatcgga ccgtgtcgtc gagatattcg agaaagagcg ataggccgac gccgagcccc
      841 agggccagga aaatcgagac aaacaccgtt cgcgtacgat tcgggccaac gggaccgtcc
      901 ggagttaggg cgtagtcaac gattgagatg ttgtttgact tgccagccct tacaacgtcg
      961 ttttctttcg aacgttgcag aagaccgttg agcattgtct tgtttgtttc tatttcctgc
     1021 tgaatgatgc ggtagttaat tgctgcttcg ttctgagtca gagtctcaga acgttgttcc
     1081 tcaaaggctt tccgaagcaa gttttcccgt tctagtgtct gacgataacg ggtggtcagg
     1141 tttgttaaca aagtagtgct cttgtgtgac ttcagatctt ttatctgctg gtcgagttcg
     1201 gtgatttgac catcgacctc tttcacctcg ggtgcctctt ctgtagcgtc acttgccagt
     1261 agctgggcac gtttttgacg aagctcagca agctttcctt cgagatcgcc ggcttgtttt
     1321 gtctccgcgt cgatcattgc gcttgctgct ccaggcgcct ttgtcgcatt gagtgcagct
     1381 tcggctgact tgcgatcatt ctcagcttcc agcagttgac gatttagccc tgcgagacgc
     1441 tccatcactg tgttttgatt tgcgtcgagt gaaacgattt tattgttctt cgcatagtta
     1501 accagccgct cttccgaagt acgaatgttc tcctgaagtt ctgctatgcg cttcgccaga
     1561 aagtcccccg taccactcat cgtttgagta tttttttcta gatttgagta aatgtaggtc
     1621 tcagcaactg aattaaccac tttcgctgca acttggggat cggtgtgttg aaatgagata
     1681 tcgatcagac gagtctcttt taagaaacca cggttctctt ttaccggctc gacatcgagt
     1741 ccaccaagaa ttgctccaac aaatggcgcc agcctcttag cttcgtttag attctcccgc
     1801 gaggaggcat cggcaacagt ggttgtgagt ggcaactgat cgacgttctt gttctcgact
     1861 ggttgctctt tcttgacacc cagtgtttgc aacacagact gccaggtcga tctcttttga
     1921 gaggcattcg cgtttagaaa ctccggattg tgttcgagat cgagcgtgcg aacgacgcgc
     1981 cggattaatc cgctacttac gagaatttgt aattgcgtgt tgaaataaac cggatcatcc
     2041 gttgagccgt agagaactgg aacgccattg gctggattgt tgtcttcgag gttgacctgc
     2101 acacgagctt tcgcttcgaa gatgtcgggt ttccgcgaca catagaccac tgttagcatc
     2161 gacactaaca acacgatgct aatgatcagc cacaaccgct tacgaatcgc acgccagtag
     2221 tcgagcaggt gcacttcggt ttcggcgttt gggtctacgc cgtagttgta gttcagaggc
     2281 acccggtctg acgggcggtc aagtgcggcg ggctccgaat ctcttctaat tatcaattcc
     2341 tgggtaggtt tcatgatcaa atcccagggc aagggagttt atgggataac acggattggc
     2401 agttgagtga cggactgcgc gccgcccatg acgatacctc ttagcaagct ctttccggtc
     2461 gacaggggaa catcgatgat gtcgtttggc ataagtgcca cgtcatcggc ctgcttcttt
     2521 tcgattgccg acaggtcgac gatcatttct ttcttcgcca tgctccccgg ttcctgacga
     2581 acaatccgga tcttgtcttt cttcgtgtct tgctttgcac cacccgccat ggccactgca
     2641 cgcgacaatg tgattggttc tttaagtgga atcgttaaag gggtgtagac gttgccaact
     2701 acgtaaacct ggtcagcatc aggtaaggta acgatgtcgc cggcctctat atacggattc
     2761 gacttgggat ccccaaccat tgtgtcgctg agtttgtagc tggaaaaagc agctatctcg
     2821 tcgtctgagt cctgccggca aagcgatgga gcagtcgagt gaacgatgtt gattgtttgt
     2881 cccgccttgg ctgaaggacc tcgagcgtag gtaagcagtt caagcaaacg cactcgacgc
     2941 tgcaattcaa atcgactctg ttcgttcacc gcgccaatga ttgcgacttg tttcgagtga
     3001 tactccttga tgaatacatc aacctgaagg ttcttgtagt atttcgcgta cttcgtcgaa
     3061 agttccttcg ccagttcacc ctcggtcttg caggcggcct gaacctccga ttcgaggagt
     3121 ggcatccgaa acatgccgtt gccttcaact ctaacgcctt cccttgagat gttcggacga
     3181 ttgtaaactc gtatatcgag tacatcgccc ggtccgatgc gatagcgatc atcatctgaa
     3241 gttttggtaa cggaggtagc agcattcacc gctgcgacat tcgttgtagg ctgttgagca
     3301 aaacaaaccg cgacgaatac gatgatgctc agaggcatca acaacaagct actcaattta
     3361 aaccttgcca ttgccggact cctgtcaaat ctcaatttga gatctgagat ctgaaattct
     3421 tttcatttcc ccgagatgcc aatacgtctt gaaagcagcg cctctcgcat gtgattcgga
     3481 tgggccagat tcaaaatcgt attgctcaac aacaccagca actcttcgtg ctggcgtctg
     3541 aacaatccgg ttaacggttg gtcaccggtc ttttcaacaa cgccttccct cacccactgc
     3601 caaaactgtg tttgggttgt ccaaaactgt tttcgatcgc ggcaaacgat tagcgccgtc
     3661 ttcttctttc gcttcttctt ctttgcgacc tgttttgcta gctgtttgtc gttaactttg
     3721 cttgtgttca ttcgaataca cctctgatct tgcatgtcgt tccgggttca aatggaagcg
     3781 gccacacaca gtaccccgtg gggaagcctc ttacgcgagg cggcgtttag ttttcaaaat
     3841 cgcgaatctc gattcgcgaa tcctagaatc tcgtggtgcg ctgtctcttt caacattcgc
     3901 attccgagtt gagattgctc cttacatcaa caacctcgaa atcaattcgg ctcttcgctt
     3961 caccgagaac ttcacgaaga tatgccgcaa gtgaaacttg accgtctgtt cgctaacaga
     4021 aagccgtttg ccaatctgcg cgttggtaag tccttcaacg cagcaaagcg cgacctgtgc
     4081 ttcacggcga ctcagcatcc cgttttcagc aacccgcgct attgctctgt caaaagtatg
     4141 attgccgttg cctgtgttcg atccgaggac gtgtggcgtc agggctgccc caccagcttc
     4201 ctggcgtctt gaaatcacct catgagggaa gtaacagcaa taggcatgag cttgctctcg
     4261 tctattgttt ccgttcttgt gaccgttttt ttcgatactg cctttgacca acagtccttc
     4321 cagaccacga cgcactgtgc tcgcgctacg gatgccagta agggtcatca gtgaacgtgc
     4381 g
//
LOCUS       DATCGC010000006         1574 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_66690, whole genome shotgun sequence.
ACCESSION   DATCGC010000006 DATCGC010000000
VERSION     DATCGC010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1574
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66690"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..555
                     /locus_tag="VIJ87_00070"
     CDS             <1..555
                     /locus_tag="VIJ87_00070"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HEY5442883.1"
                     /translation="KIGHALHDFDPVFDRFSRSDKIKQLSADLGIENPLLLQSMYIFK
                     QPNIGGEVTCHQDSTFLYTEPNDIVGLWFALEDATLENGCLWAIPGGHKSGLKSRWVR
                     IGQVGMEFQTFDAEPWPEEELVPLEVKKGSLILLHGLLPHRSLENKSSKSRHAYTLHL
                     IGGNANYSADNWLQRSQSMPLRGF"
     gene            1358..>1574
                     /locus_tag="VIJ87_00075"
     CDS             1358..>1574
                     /locus_tag="VIJ87_00075"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEY5442884.1"
                     /translation="MDQPVAILSKPQPNYTGEARKKGVEGTVVLRVVLRADGSIGTVS
                     VVSGLPNGLTERAIAAARSIKFEPAQKN"
BASE COUNT          380 a          445 c          391 g          358 t
ORIGIN      
        1 aagatcggac acgcgcttca cgatttcgat cctgttttcg atcgattctc acgcagcgat
       61 aagatcaaac aactctcagc ggacctcggc atcgagaatc cgcttcttct ccagtcgatg
      121 tatatcttca aacagccaaa catcggcggc gaagtaacct gtcaccagga cagcacattc
      181 ctctacacgg aaccgaacga catcgttgga ctctggttcg cgcttgaaga tgcgacgttg
      241 gagaacggat gcctatgggc aatacctggc ggtcataaaa gcggactgaa atcgcgttgg
      301 gtgagaattg gacaggttgg aatggagttt caaacgtttg atgctgaacc ctggccggaa
      361 gaagagttgg tgcctttgga agtgaagaaa gggagtttga tcctgctcca tggacttctc
      421 ccgcatcgaa gtcttgagaa caagtcttca aagtcacggc atgcgtacac attgcacctg
      481 atcggcggca acgcaaacta ttcagcagac aactggctcc aacggtctca atcaatgccg
      541 ctacgtgggt tttagtccat cgtcaacgta aagtcggttt cacgatagaa acaaagcgag
      601 cttggagagc tggcgagttt gcttgtgctc ccactggtcc tcgcaaaaag ttcctgacgt
      661 tgacgaaaca cagcccttcc ttactatcgc caaccgatct cttgaaagtg tagtctcatt
      721 agtgatgaag actaaaaact gccccaaatg cggtttcacc gtttctgacg agtttcggtt
      781 ttgtttggag tgtggggccg agttgagtac aggaacggac ttcgagcccc cgcctacaat
      841 tgttttcccg gagccgaccc agctttcacc aacagtcccg aatattgaag gagactcgca
      901 agaacctcag tccaccatca tcttccaagg accggctcag cgtccaccgt ccgtttcgcc
      961 accagttcgc cctcattcga aactgccctg gttcgtggtg ggaatttgtg ttttggtaat
     1021 cggggttctt tgttatttga cgatttttag aggcaaggcg agggaaagcg ataactcgat
     1081 ctctcagtta caatccgcaa caccttttcc cagcgcaacg ccttccccgg cagagacttc
     1141 ttctccagca gcgactcctt cctcgactcc gacacgatcg ccgactgcga gtccttctcc
     1201 cgcagctacg tcatcaccag cgccgccttc tactccttct cctgcaacta cctcatcacc
     1261 agcgccgtcg ccttctactc agacagtccc gacgcaaacg ccaccaacag cggagccaac
     1321 cattccaccg gtcgaaaccc cagcttccgg cccagggatg gaccaaccag tggcgatctt
     1381 gtcgaagcct caaccaaact acactggaga agcgcgaaag aagggggtcg agggaacagt
     1441 tgtgttgcgg gttgtgctta gggccgacgg cagcattgga accgtaagcg tcgtgagtgg
     1501 tttacccaat ggtttaaccg aacgcgcgat tgccgctgcg cggagcataa agtttgagcc
     1561 tgcccaaaag aacg
//
LOCUS       DATCGC010000007         2887 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_432973, whole genome shotgun sequence.
ACCESSION   DATCGC010000007 DATCGC010000000
VERSION     DATCGC010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2887)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2887
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_432973"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..547
                     /locus_tag="VIJ87_00080"
     CDS             <1..547
                     /locus_tag="VIJ87_00080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442885.1"
                     /translation="PAHLYHRWERHAALCDRCTELPGEVVRAIGACYSYISEEQPVPF
                     GLNERILQATLGTVVPHEVKAPWTSRAASWLRLWLDPIVSPQLASVATMLLVSILVLT
                     NTVSADGSISGVYNAGVQLAERTSGQSNSEVREVTDDLKLLVEPEEQKPAAPAAPAKD
                     TTDQQKEQKPNTKSGSTRKNR"
     gene            688..1323
                     /locus_tag="VIJ87_00085"
     CDS             688..1323
                     /locus_tag="VIJ87_00085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442886.1"
                     /translation="MAGVELLRHHGTPSHIVRRKSSPFVATLLSFVPGLGAAYNGQTS
                     KAIVHFAIFASFFQMAVLTQAAIAFFVLGVLGTWLFAAVDACRTAQLMRAGLSPDAEE
                     DVIARRLYGNPFAWGTTLIIIGTMFLLHTLLGVQLPIKGLLPVALVALGAYMLFDYLR
                     RGKASDRIIRFDSRRPPPSVVASKSTETATFRTGETTQFARRDPLPFERRS"
     gene            1343..1561
                     /locus_tag="VIJ87_00090"
     CDS             1343..1561
                     /locus_tag="VIJ87_00090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442887.1"
                     /translation="MLCFVKAFGRLGSVIALILLVVALLRQLVTLVSFLIVVIKIAVV
                     VIFVAVLVLIVLAIIRDRSRKRREVEDL"
     gene            1862..2716
                     /locus_tag="VIJ87_00095"
     CDS             1862..2716
                     /locus_tag="VIJ87_00095"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEY5442888.1"
                     /translation="MAKDDRFYAFIIAHTSSSRARVQRIRVERKVVTISCVLGIIIVA
                     GLGFGIYGLTQQAAHFQTEMENQQLRAENDRQRYELAKLNNRVEKVEDTSRKLAEKSG
                     VIQNDIDTNGSGGPEIPLDEMGLATLAAKMSKLEDDMQAYEAVLRKRGYTPTIWPVDG
                     KLEGGFGGRRNPFGGPGYEFHTGQDIEAPLGAPVVAGASGKISFVGWQNGYGQLVVVD
                     HEGGLTTRYGHLSHIDVDAGQQVSRGQLVGKVGSTGRSTGPHLHYEVRINDAPVNPLE
                     YLLMSTKK"
BASE COUNT          676 a          692 c          777 g          742 t
ORIGIN      
        1 acccgcacat ctctatcaca gatgggaaag gcatgcggcg ctttgtgatc gctgcaccga
       61 attgcccggt gaagtcgtac gcgcaatcgg cgcttgctac tcgtacattt ctgaagaaca
      121 acccgtacct ttcggcttga acgaaagaat actgcaagca accttgggta cagtcgttcc
      181 tcatgaagtg aaggcacctt ggacatcgcg tgctgcatcg tggttaaggt tgtggctcga
      241 tccgattgtt tcgccccaac tcgctagcgt agcgacaatg ttattggttt cgattctggt
      301 gctgacgaac acggtttcag ctgacggatc gatcagcggt gtttataacg ccggtgtaca
      361 acttgctgaa cgtacaagcg ggcagtcaaa cagcgaagtg cgagaagtca cggatgatct
      421 aaaactgttg gtagagcccg aagagcagaa accggcagcg cctgcggcac cagccaagga
      481 cacaacagat cagcaaaaag aacagaagcc aaacacgaaa tcgggaagca ctcgtaagaa
      541 tcgctgagga gtaatgttta agaaatgatg tactgtggct accatgcaaa gaatccagcg
      601 gtggttcagt gcaatcagtg cgcccgttgg ttgtgtccgg cttgtgatca tcgtgtcagg
      661 gggtttccgt tttgccagga ctgcattgtg gctggcgttg aactacttcg acatcatggc
      721 actccatcgc acatagtcag acgtaagagt tcgccatttg tagcgacgct tctatcgttc
      781 gtgcctggtc taggcgccgc ttacaacggt caaacttcca aagcgatagt gcacttcgcg
      841 atctttgcca gcttctttca gatggctgtg ttaactcaag ccgccatcgc cttctttgtt
      901 ttgggcgtgc tgggaacctg gctctttgct gcggtagatg cttgtcgaac cgcgcaattg
      961 atgcgagctg gcctttcgcc tgatgctgaa gaagatgtaa tcgcccgacg gctgtatgga
     1021 aacccattcg cgtggggcac gacgttgata atcattggaa cgatgttcct gctgcacaca
     1081 ttgcttggag tgcagttgcc gattaaggga ctgttgccgg tcgcgttagt agcactgggt
     1141 gcctacatgt tgtttgatta cctgcgccga ggtaaagcat cggatcgaat cattcgtttc
     1201 gattcccgtc ggccaccgcc gtcggtagtt gcgtcgaagt cgactgaaac ggcgactttt
     1261 cgaaccggtg aaactacgca gtttgcgcgt cgcgatccgc ttccctttga aagaagatcc
     1321 tgaggaattc acggagtaat ttatgttgtg tttcgtaaaa gcttttggac gacttggtag
     1381 cgtaatcgca ttgatacttc tggtcgttgc gttgttgcgt cagctcgtta ccttggtcag
     1441 ttttctcatt gttgtgatca agatagccgt ggtcgtgatc tttgtcgcgg tgttagttct
     1501 aattgtgttg gcaataatcc gcgatcgctc acggaaacga cgcgaagtcg aagatctcta
     1561 agctcaactc tgccgacaag tcattctgag gccctgagta cgttgttgtt ctcagggcct
     1621 ttctgttttc acaagttgca acccccaagt ccgctatgat agggtcaggg ctcttgcagc
     1681 accgtccgga tgggtttcac cttggagggt ccttgaggtt ttcaattcat ccgctgcaat
     1741 tcttcaagta ggttcaataa gaacatttag gttcaacgca aatcgctttt tggcgagttg
     1801 tgtcttttgg ttgctgacgc agcctcgatt ttttccgcgc agcaaaaagg agcacgccaa
     1861 gatggcaaaa gacgaccgat tctacgcctt cataattgcc cacacttcca gttcacgagc
     1921 tcgagtccag cgcatacgtg tcgagagaaa agtcgtaacg atctcttgtg tgctgggaat
     1981 cattattgtt gctggtttgg ggtttggtat ttatggattg acccagcagg ctgcccattt
     2041 tcaaacggaa atggagaatc aacagctaag ggccgagaac gatcgacagc ggtatgaact
     2101 cgcgaagcta aacaatcgcg tcgagaaggt cgaggatacc tcccgaaaac tcgccgagaa
     2161 atcgggcgtc atccagaatg acatcgacac caacggatcc ggtggaccgg agataccact
     2221 cgatgaaatg ggactggcta cgttggcagc aaagatgagt aagcttgagg atgacatgca
     2281 agcgtacgaa gccgtcctgc gtaagcgagg ctacacacct acgatttggc ctgttgatgg
     2341 aaagctcgaa ggcggatttg gtggtcgacg aaatcccttt ggtggccctg gatacgagtt
     2401 tcacacaggt caggatatcg aagccccgct gggcgctccg gttgttgctg gagccagtgg
     2461 caaaatttca ttcgtaggct ggcaaaatgg gtacggccaa ctggtggtcg tcgaccacga
     2521 aggtggtctt acaacccgct atggccattt atcacatatc gatgttgatg ccggtcaaca
     2581 ggtgtccaga ggccaattag taggaaaggt tggctccacc ggacgctcaa ccggacccca
     2641 tcttcactat gaagttcgta tcaacgatgc cccggtaaat ccccttgaat atttgttaat
     2701 gagtacgaaa aaatagaggc tggaatgggc ggttgattgg aacttttata cctgcaaggc
     2761 ccgtaagctc agtaggcctt agatttaacc agcttttttc attgacagcc ccatttgctt
     2821 tcgcttagta tgcgccgtcg tttttgatgc agggtcggag ttatctcagt tccccgcata
     2881 ctaaaga
//
LOCUS       DATCGC010000008         1023 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_33424, whole genome shotgun sequence.
ACCESSION   DATCGC010000008 DATCGC010000000
VERSION     DATCGC010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1023
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33424"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1023)
                     /locus_tag="VIJ87_00100"
     CDS             complement(<1..>1023)
                     /locus_tag="VIJ87_00100"
                     /inference="COORDINATES: protein motif:HMM:NF015140.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007154 - cell communication [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Calx-beta domain-containing protein"
                     /protein_id="HEY5442889.1"
                     /translation="FDIPSQTAGLQFALSGSAPTDLEVVPGSPQSIAISQNQVVSVYD
                     DGVKRPSVTDFNSRSGPIEFASPTTLYGYNNGDSGNDFHKLSLDASGIHLVQSKKNLL
                     NGGDISFANGLVYSTFGRVLDPETQNLVGSFKTTNTNFALGSTLVVDPALNRIFFAGN
                     NGGGIQILAYELNTFLPVGGIVIQNVGSSPPTRMLRWGSNGLAIRSSDGQVVLIQSKL
                     IANTPVPTGVRFSATQLSTSESVGNFNLTISRNGDLSSSTSVDFATSDGTATAGTDYT
                     ATSGTITFAPGQATRTVVIPILNDNVFENASETFTVNLSNPTNGALITGPPVTVTISD
                     SQFRPS"
BASE COUNT          271 a          239 c          267 g          246 t
ORIGIN      
        1 tggatggcct gaactgacta tcagagattg tgacggttac gggtgggcca gtgatcaaag
       61 cgccatttgt aggattgctc aaattgactg tgaaagtctc cgaagcgttt tcaaagacat
      121 tgtcgttgag aatcggaatg acgacagttc tcgtcgcttg accgggagca aacgtaatcg
      181 ttccggacgt cgcagtgtag tcagtgccgg ccgtagcagt gccatcgctg gtggcaaagt
      241 cgacggacgt agacgatgaa agatcgccat tacgactgat tgttagattg aaattcccaa
      301 cgctttcaga cgttgatagc tgcgttgctg agaaacgtac tccagtgggc accggtgtat
      361 ttgcgatcag tttcgattga atcaatacga cttgaccgtc ggaacttctg attgccagcc
      421 cgttggagcc ccaacgaagc atccttgtcg gaggagatga tccaacgttt tgaatgacga
      481 taccaccaac aggcaagaac gtatttagtt catatgccaa aatctgaatg ccaccaccat
      541 tattgccagc aaagaaaatc cggttcagcg ccggatcaac gacaagagta gatccaagcg
      601 caaagttcgt gttggtggtc ttaaaagatc ccaccaggtt ttgagtttct ggatctaaaa
      661 cacgaccaaa tgtcgagtac acaagtccgt ttgcgaaact tatgtcgcca ccattgagca
      721 agttcttctt tgattgcacc aagtgaatac ccgatgcgtc gagactgagc ttgtgaaagt
      781 cgtttccgga gtctccgttg ttgtacccgt acagtgtcgt cgggctcgca aattcaattg
      841 gcccggaacg agaattgaaa tcagttaccg aaggacgctt aactccgtcg tcgtaaacag
      901 agacgacctg gttttgtgag atcgcaattg actgcggact gccaggcaca acctcgagat
      961 cagttggcgc gctgcccgaa agagcaaact gtagcccggc ggtttgcgaa ggaatgtcaa
     1021 aac
//
LOCUS       DATCGC010000009         1048 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_33448, whole genome shotgun sequence.
ACCESSION   DATCGC010000009 DATCGC010000000
VERSION     DATCGC010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1048)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1048)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1048
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33448"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..573
                     /gene="lexA"
                     /locus_tag="VIJ87_00105"
     CDS             <1..573
                     /gene="lexA"
                     /locus_tag="VIJ87_00105"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: protein motif:HMM:TIGR00498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor LexA"
                     /protein_id="HEY5442890.1"
                     /translation="MESNQEPPTMAEIGRQFQMRSSASVHGILSALEREGLIKRIPNV
                     SRGIELVEQTTDNEEGEIPLLGIVAAGQPIEAVLSHDTVPVPRDMQGRGRTFALRVRG
                     DSMIEENIQDGDIIIVASQKTADNGQVVVALIDGNYATVKKFYREPDFIRLEPANPQF
                     KPIFVKTPERIQIQGVVRGLIRKYDQTAIA"
     gene            577..864
                     /locus_tag="VIJ87_00110"
     CDS             577..864
                     /locus_tag="VIJ87_00110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442891.1"
                     /translation="MMIPSGQSEVEFLGFALSDCTVRLNQTEAKYLIVVHRTALELAV
                     PNHFGVEVGGYWLMADQIEQLRKLPSYYSADEAVLVRKAIEAYLAAQLENT"
BASE COUNT          290 a          232 c          281 g          245 t
ORIGIN      
        1 atggagtcga atcaggaacc accgacaatg gcggaaatcg gtcgtcagtt tcagatgagg
       61 tcgtcggcaa gtgtgcacgg gattctttca gccctggaac gggaaggatt aatcaaacga
      121 attcccaacg tcagtcgtgg aatcgaactg gttgagcaaa cgaccgacaa cgaagagggc
      181 gaaattcctt tgcttgggat tgttgccgcc ggtcagccga tcgaagcagt tctaagtcac
      241 gacactgttc ccgtccctag agacatgcag ggccgtggaa gaacattcgc cttgcgtgtg
      301 cgcggcgatt cgatgattga ggaaaacatt caggatggcg acatcattat cgttgcctca
      361 caaaagactg ctgacaatgg tcaggtggta gtggcattga tcgatggaaa ctatgcgacg
      421 gtgaagaagt tttatcgtga accagatttc attcgacttg agccggcgaa cccacagttc
      481 aaacccatct ttgttaagac accggaacgg attcagattc agggtgtagt tcggggcctg
      541 attcgcaaat acgatcaaac tgcgattgcg tgagttgtga tgattccgtc aggacaaagt
      601 gaagtggagt ttcttggttt tgcattaagc gattgcactg tcagactaaa tcagacagaa
      661 gcaaaatatt tgatagtcgt ccatcgcaca gcattagagc tagccgtgcc aaatcatttc
      721 ggagttgagg tcggcgggta ttggttaatg gcagatcaga tcgagcaact aaggaaactg
      781 ccttcatact actcagcaga cgaggccgta ctcgttcgga aagcaataga agcttatctc
      841 gcggcacaac tggagaatac ttagttatgc cttaaagcaa ggaaggagta gttcatgagc
      901 aaaccagaaa ttcccaatat gagaacctgg ccacgcaatt tgagcacgtt gcaaggcggc
      961 ggcctatcta ctttacagga cggtggcatg tccaccttac aatacggcgg catgtcgact
     1021 ctacagtatg gaggaatgtc cactcttc
//
LOCUS       DATCGC010000010         1041 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_366404, whole genome shotgun sequence.
ACCESSION   DATCGC010000010 DATCGC010000000
VERSION     DATCGC010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1041)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1041)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1041
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_366404"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            65..>1041
                     /locus_tag="VIJ87_00115"
     CDS             65..>1041
                     /locus_tag="VIJ87_00115"
                     /inference="COORDINATES: protein motif:HMM:NF027224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BNR repeat-containing protein"
                     /protein_id="HEY5442892.1"
                     /translation="MKRSLLTGLMLLLFTSFSPSTSAQSSKPKLIPIAKGWAKNQINA
                     VIFRHNSIVSHDNTQYVAFYDDAGKVILAKRRLGSTDWDTHTTQYTGDTKDAHKSISI
                     AVDGAGYLHMVWNQHDSKLEYCRSVKPGSLDLTPTVSMLNDKENRVTYPEFYNLPGGD
                     LLFLYRDGSSGRGNLVLNRYDLKSRKWVRLQDKLIDGEDTRSAYWQATVDQKGAIHIS
                     WVWRETPDVLSNHDICYAKSNDGGKTWMKSTGEKYQMPITAASAEYVIRIPQRSELIN
                     QTSMTADAFGRPYIVSYWRSATDNVPQYNLVYSDGRSWQTSQVTRRTQS"
BASE COUNT          280 a          262 c          254 g          245 t
ORIGIN      
        1 aagacatcgc tggccgtact ataaacatgc cactcctacc ggagtgaaga ctggttccct
       61 accgatgaag agatcgctgc tgacaggttt aatgctcttg ctgtttactt cgttttcacc
      121 gagcacttca gcccagtctt caaaaccaaa gttaatcccc atcgctaagg gctgggccaa
      181 aaatcaaatc aacgccgtca tctttcgtca caactcgatt gttagtcatg acaacactca
      241 atacgtagcg ttctatgatg acgccggaaa agtaatcctg gcgaagcgca ggcttggctc
      301 gaccgattgg gacactcaca caacgcagta cacgggcgat acaaaggacg cccataagtc
      361 gatcagtatc gcagtggacg gcgctggtta tttacacatg gtatggaacc agcacgattc
      421 gaaacttgaa tactgtcgta gcgtgaagcc tggttcgttg gacctaactc cgacagtttc
      481 aatgctgaac gataaagaaa accgtgtaac ctatcccgaa ttctataatc ttccgggtgg
      541 agacctgctt tttctttatc gcgatggaag ttccggccgc ggaaatctcg tgctgaatcg
      601 ttacgatctc aaaagtcgta agtgggtacg acttcaagac aagttaatcg acggcgaaga
      661 tacgcgtagc gcttactggc aagccacggt agatcagaag ggtgcgatcc atatttcctg
      721 ggtttggcgc gagacacctg acgtcttgag taatcacgac atctgctatg cgaagtctaa
      781 cgacggtgga aagacctgga tgaagtcgac gggagaaaag tatcaaatgc ctatcacggc
      841 cgcttcagct gagtacgtga tacgcattcc tcagcgaagc gaattgatta atcagacttc
      901 aatgacagcc gacgcgtttg gtcgaccgta cattgttagt tactggcgat cagctactga
      961 caatgtccct cagtacaacc ttgtgtacag cgacggcagg tcgtggcaga catcacaggt
     1021 cacccgccgt acacagtcgt t
//
LOCUS       DATCGC010000011         1228 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_66793, whole genome shotgun sequence.
ACCESSION   DATCGC010000011 DATCGC010000000
VERSION     DATCGC010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1228)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1228)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1228
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66793"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            134..1171
                     /gene="purM"
                     /locus_tag="VIJ87_00120"
     CDS             134..1171
                     /gene="purM"
                     /locus_tag="VIJ87_00120"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004641 -
                     phosphoribosylformylglycinamidine cyclo-ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HEY5442893.1"
                     /translation="MTTKPISYADSGVDIDAATRATERIKELARTTFNQRTLSEIGSF
                     GGMFDGAFPHMAQPVLVASADGVGTKLKIAFATGVHNTVGRDLVNHCVNDILVQGARP
                     LFFLDYIATGKLSTDIVASVIEGITDGCRTNGCVLLGGETAEMPGFYQEGEYDIAGFI
                     VGVVDREKIIDGKAIKAGDVLLALPSVGLHTNGYSLARKLFFDVAGYAPDTVLPELQM
                     SVGQALLQAHLSYLRPLDSLLDTGVIKGLAHITGGGLTDNIPRILPEGTAVRIQKRSW
                     PVLPIYELMREIGNVSNAEMYRTFNMGVGMVIVCSPENRDSIKSQLEANGDTCYEIGE
                     VVSGDKSVTIE"
BASE COUNT          293 a          291 c          344 g          300 t
ORIGIN      
        1 aaggagacga cggaagatct ttttatcggt cggacgccgc agaaagatga ttcgtcgagg
       61 tcaggattta ttgcgtacgg agattttgga ccaccgccta aagcggtagt gaagaaggca
      121 gccaaataac agaatgacca ctaaacccat ttcctacgcc gattccggtg tcgatatcga
      181 tgccgcgacg cgcgcgactg agcgcatcaa agaattagca cggaccactt ttaaccagcg
      241 gacgctttcc gaaatcggaa gcttcggcgg aatgttcgac ggggcgtttc cgcacatggc
      301 ccaaccggtg cttgttgcat ctgctgatgg cgtaggaaca aaactcaaga ttgcgtttgc
      361 taccggagtt cacaatacgg ttggccgtga tctcgtcaac cactgtgtga acgacattct
      421 agtccagggt gcccgtccac tcttcttcct cgactatatc gccaccggta agctctcgac
      481 cgacattgtc gcaagtgtca ttgaagggat aactgatggg tgccgaacga atggttgcgt
      541 gttgttaggt ggtgaaaccg ccgagatgcc tggcttctac caggaaggcg agtacgacat
      601 tgctggattc atcgttggcg ttgttgatcg ggaaaagatt atcgatggca aggcgatcaa
      661 agccggagat gttttgttgg cactgccgtc agttggttta cacacgaatg gctactcgct
      721 tgcacgcaaa ctgtttttcg atgtagccgg ctatgctcct gacacggtct tgccggaact
      781 tcagatgtca gtgggccaag cgctgttgca agcgcatctg agttatctac gcccgcttga
      841 ttcgttactc gacaccgggg tgataaaggg actggcccac attactggtg gaggactaac
      901 tgacaacatt cctcgcattc ttccggaagg cacggcggtc aggattcaaa aacgttcctg
      961 gccggttctg ccgatttatg aattgatgcg cgagatcggg aatgtgtcga acgccgagat
     1021 gtaccggacg ttcaatatgg gagtcgggat ggttattgtt tgttcacccg aaaaccgcga
     1081 ctcaatcaag tcacagttag aagctaatgg cgacacctgt tacgagattg gcgaagtagt
     1141 ttctggtgat aaaagcgtaa cgatcgaatg acgtttggca cagactcagt ctgtgttttg
     1201 gagtcgagga cgtctcgatg actccgat
//
LOCUS       DATCGC010000012         1392 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_100052, whole genome shotgun sequence.
ACCESSION   DATCGC010000012 DATCGC010000000
VERSION     DATCGC010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1392)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1392)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1392
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100052"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..628)
                     /locus_tag="VIJ87_00125"
     CDS             complement(<1..628)
                     /locus_tag="VIJ87_00125"
                     /inference="COORDINATES: protein motif:HMM:NF013775.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HEY5442894.1"
                     /translation="MSLVQHAPSFDDAQAATIANDVYGISGVVKELPSERDQNFLFTA
                     DTGERFVLKIANSLEQRALLEAQNEAMRHLQTRVDFCPRVVKTQSGESIAQVSTKTAP
                     HYVRLVTFIPGLPLANVNQSSDVLVDLGKKLGQLTRALSDFDREAFHRDFHWDLANGL
                     NLIREYELLVTDAVLQLQLESCVQRFEKVVVPRLPRLRRSIIHADANDH"
     gene            complement(635..>1392)
                     /locus_tag="VIJ87_00130"
     CDS             complement(635..>1392)
                     /locus_tag="VIJ87_00130"
                     /inference="COORDINATES: protein motif:HMM:NF037660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442895.1"
                     /translation="GNLGRISEAMAVLEDAISKARRNGDLFWFPRMPNCIGWLHREIQ
                     DFEGALKYDQEGLHVGREFHVLEAEANSLINLGIDHTIANKPSETASVFHEARDIFER
                     DKWFRWRYNIRLEAATAEHWLRQGDLTQAAEFTEKLIQMADEFKSRKYLAVGHKLKAD
                     IAIAGNDTETARKEFEVALKVLAEYPAPVVKWKVLAALGQLLKSAGETDEARRASTEA
                     REIVEYCASNVSDDDLRSIFLNSKAVQEVMNGC"
BASE COUNT          332 a          382 c          336 g          342 t
ORIGIN      
        1 tgtggtcgtt agcgtcggcg tgaatgatgc tccggcgaag ccgcggcaac ctgggaacta
       61 cgaccttctc gaaacgctgc acacaactct cgagttgcaa ttgtagaact gcatcagtta
      121 ccagcagctc gtattcacga atcagattga gaccgtttgc gagatcccaa tgaaaatcac
      181 gatgaaaggc ttcccggtcg aagtcggaga gggccctggt taactgtcca agttttttac
      241 cgaggtcaac caagacgtct gaggattggt ttacgttggc cagtggaagc ccgggaataa
      301 acgtaaccag ccggacataa tgaggagcag ttttagttga gacttgggcg atcgactcgc
      361 cagactgcgt tttgacaacg cgaggacaaa agtcgactcg cgtttgcaaa tgacgcatcg
      421 cctcgttttg cgcttcgaga agcgcccgtt gctcaagcga gtttgcaatc ttcagaacaa
      481 accgttcacc cgtgtccgcg gtaaaaagaa aattctgatc gcgttcgctt ggtaactctt
      541 taacgacgcc actaatgccg taaacgtcat ttgcaattgt tgccgcttgt gcgtcatcga
      601 aggaaggcgc gtgttgaacg agggacatta gcttctagca cccgttcatt acttcctgaa
      661 cagccttcga attcaaaaag attgagcgca gatcgtcatc tgagacgttg ctcgcgcagt
      721 actcaactat ttcacgcgcc tctgttgatg cccgccgggc ttcgtcggtc tcaccagcac
      781 ttttcagcag ttggcccaaa gccgcaagca ctttccactt cactactggc gccgggtatt
      841 ccgccagcac cttcaacgca acctcaaact cttttcgcgc cgtctcagtg tcgtttccgg
      901 cgatagcaat atcggctttc aatttgtggc caacagccag gtacttccgc gacttaaatt
      961 catctgccat ttgaattaac ttctcagtga actcagcggc ctgcgtcaga tctccctggc
     1021 gcaaccagtg ttcggctgtc gctgcttcaa ggcgaatgtt gtaacgccag cgaaaccatt
     1081 tatcgcgttc aaaaatatcg cgcgcctcat ggaacactga agcagtctca gacggcttat
     1141 tagcaatcgt gtggtcgata ccgagattga tcagtgagtt tgcttctgct tccaatacgt
     1201 gaaactcccg gccgacatgc aagccttcct gatcgtattt caatgcaccc tcgaagtcct
     1261 ggatttcccg atgcaaccag cctatgcaat taggcattcg tggaaaccag aacaagtcgc
     1321 cattccggcg agccttggag atggcgtctt ccagaaccgc catcgcttca gagatacgac
     1381 cgagatttcc ta
//
LOCUS       DATCGC010000013         1905 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_333094, whole genome shotgun sequence.
ACCESSION   DATCGC010000013 DATCGC010000000
VERSION     DATCGC010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1905)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1905)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1905
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_333094"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..684
                     /gene="ttcA"
                     /locus_tag="VIJ87_00135"
     CDS             <1..684
                     /gene="ttcA"
                     /locus_tag="VIJ87_00135"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF007972.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HEY5442896.1"
                     /translation="FPAEVLPGYLKELGVAFRIVERDTYSIVKRLVPAGKTFCSVCSR
                     LRRGILYNIAVEEGCNKIALGHHADDIITTLLLNLFYVGSLKAMPPKLRSKDGRNTVI
                     RPLAYCNVRDISDYAAWREFPIIPCDLCGSQSNLKRARINRLITELEQEIPNIRSSML
                     TAVGNVAPSQLLDHELFDFKRLGTATGDVEAELDLAVGHTDEDLKSTLVSIGELGQEQ
                     VGKGGLPPL"
     gene            756..1637
                     /locus_tag="VIJ87_00140"
     CDS             756..1637
                     /locus_tag="VIJ87_00140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442897.1"
                     /translation="MTTKGELDFSAFPPGSVTEYTTLVCLACIFDIFTKQFGLAPRSA
                     YSEIKRYSPTIHELTARQAVRPFFDSEEKHPRCPYCNAAKRWHARFDTQAIEGGKTSD
                     TARRALVKTLAKKADQFAVLELKSDRRTAFFDWLDTLRLNLDLSLDGWLLDATRAFLE
                     RREPKTKWGEVFADLRAVRRSARISEGWEREGSRLFLAPPLYNEAVFVQYLVSRSHEH
                     GGRTLEGRLTLHELIHRLRRGGYLSAHGITATDQFEILEKLLDEVAGAGQLKLYYIVD
                     RREFLEKVKSVYASYAS"
BASE COUNT          441 a          477 c          500 g          487 t
ORIGIN      
        1 ttccccgctg aagtcctgcc gggctacttg aaagaactgg gtgttgcctt tcgcattgtc
       61 gaacgcgaca cctattcaat cgtcaaacgt ctggtgccag cgggtaagac cttttgctct
      121 gtttgttccc gtcttcgacg agggattctc tacaacattg ccgtcgaaga aggctgtaat
      181 aagattgccc tgggccatca tgctgacgac atcatcacaa ccctgttgtt gaatctcttc
      241 tacgtcggtt ccctaaaggc gatgccaccg aagttacgtt ctaaagacgg acgcaacacg
      301 gtgattcgac cgctcgctta ctgtaatgtg cgcgacatta gtgattacgc tgcctggcgt
      361 gagtttccga tcatcccttg tgacttgtgt ggctcacagt cgaacctcaa acgtgcgcga
      421 atcaatcgac taatcaccga actcgaacaa gaaattccga atatccggtc gtcgatgttg
      481 acggccgtgg gaaacgtggc cccttcgcag ttgctggatc atgagttgtt tgatttcaag
      541 agactcggaa cggcgactgg ggatgtcgaa gcagaacttg atctggccgt gggccatacg
      601 gatgaagatc tgaaatcgac tttagtatcg atcggagaat tgggtcaaga acaggtcggg
      661 aagggtggtt tgcccccgct ctgatcttga taacaacatc aatatgtccc gacgaggcaa
      721 gcgacccttt cctacttgag cttgagatct agtttatgac cactaaaggt gaactcgact
      781 tcagtgcgtt cccacctggt tcagttacgg agtacacgac tcttgtttgt ctcgcctgca
      841 tattcgacat cttcaccaaa cagtttggcc ttgctccccg ctcagcttat tcagaaatca
      901 aacgctactc gccaaccatc cacgagttaa cagcccgaca ggcagttcgt ccgtttttcg
      961 acagcgaaga gaaacatcca cgttgtccgt actgcaacgc cgcaaagcgt tggcatgctc
     1021 gcttcgatac ccaggcaatc gaaggaggca agacctcgga cacggctcgt cgcgccctgg
     1081 tgaagaccct tgccaagaaa gccgatcagt ttgctgtgct tgaactgaaa tcggatcggc
     1141 gtacagcttt cttcgattgg ttggatacgc tgcgtcttaa ccttgaccta agtttggatg
     1201 gctggttgct agatgcgacc cgggcttttc ttgagcggcg tgagccaaag acaaagtggg
     1261 gtgaagtgtt tgctgacttg cgggctgtcc ggcggtcggc tcgcatatct gaaggatggg
     1321 agcgagaagg ttcgcgacta tttctcgcac cgcctttata caacgaagct gtgtttgttc
     1381 agtatttggt aagtcgctca cacgagcatg gaggacgcac acttgaaggt cggctgactc
     1441 tacacgagtt gattcatcgc ctgcgtcgtg gtggctatct gagcgcacat ggcattacag
     1501 cgaccgatca gtttgagatt ttggagaagt tgctagacga agtagcggga gcgggccaac
     1561 taaaacttta ttacatcgtt gaccggcgtg agtttttgga aaaagtgaaa tcagtttacg
     1621 cgagttatgc cagctaatga tgtccgatat gctttagagc ttgtcgctga ttagcttgag
     1681 agactacctt cgccgaatca gcgacaagac agacgcatat cggacactca cggcgacttg
     1741 tacttatcaa tcaactgctg caatccggct gtcgagttat gccggtaccg atagagcctc
     1801 gtgaggtcgg gaatgacttg ttgtaataaa agctgatatt gctctttgcc cgtcgccagg
     1861 cctgctgcat gggcatacgc gtcaatgata tcgtcgatca tcgtc
//
LOCUS       DATCGC010000014         1189 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_433033, whole genome shotgun sequence.
ACCESSION   DATCGC010000014 DATCGC010000000
VERSION     DATCGC010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1189)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1189)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1189
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_433033"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..190
                     /locus_tag="VIJ87_00145"
     CDS             <1..190
                     /locus_tag="VIJ87_00145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442898.1"
                     /translation="KDWECICLSGLPQELEHTERISRHYDRDHRISFLPQSDLVSQSS
                     DQQTKNGSKGNQNKTTGR"
     gene            249..680
                     /locus_tag="VIJ87_00150"
     CDS             249..680
                     /locus_tag="VIJ87_00150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442899.1"
                     /translation="MSIKANALPQYLGNGDPALKDYYPPWLDNMADDATVEGSMLDGA
                     VQGAEAVRSVVLTIRSLYDRQEHKFAGPYSDNGFLEDYVAEVHGEPIGCVVLVTYNAA
                     GQTQHVVASYRPRSSLLFFSRLLSEKFAGTPIAEHFSARES"
     gene            964..>1189
                     /locus_tag="VIJ87_00155"
     CDS             964..>1189
                     /locus_tag="VIJ87_00155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442900.1"
                     /translation="METTSAPLPGSAPDEMFPVLTPEQQGRVLTHGRLRKAESGETIV
                     EPSKPGIKFFVVVSGRLELQRVSDDREELIA"
BASE COUNT          283 a          323 c          329 g          254 t
ORIGIN      
        1 gaaagattgg gaatgtattt gtttgtccgg tttgccgcag gagttagagc atacagaaag
       61 gatttcgcgg cactacgacc gtgatcatcg cattagtttt ctgcctcagt ctgatcttgt
      121 cagtcagagc tcagaccaac aaaccaagaa cggatcaaaa ggaaaccaaa ataagacaac
      181 cggacgctag ccaaggaacc agcgtatcga gcgcaaacaa agagcccatt cgtcaggagg
      241 aattacttat gtccatcaaa gccaacgcgc tcccccaata tctcggtaac ggcgatcccg
      301 ctctcaaaga ctactacccg ccatggctcg acaacatggc cgacgacgca accgtggagg
      361 gctcgatgtt ggacggcgcc gtgcagggtg cggaagccgt ccggtcagtc gtgctcacta
      421 tccgctcgct gtatgaccgc caggagcaca agttcgctgg cccttacagc gacaacggat
      481 tcctcgagga ctacgtcgct gaggtccacg gcgagcctat cggctgtgtc gtgctggtca
      541 cctataacgc ggcagggcag acccagcacg tcgtagcgag ttaccggcca cgcagctcgc
      601 tgttgttctt ttcccgtctg ctgagtgaga agttcgcagg cacccctatt gccgagcact
      661 tctccgctag ggagtcctga aactggccga agtgatccgc tcgtgatgga ggcaggtgag
      721 gaatcggtga agcgtgttgt gctgacgccc gagttgctct atctcgatgc tggccaattc
      781 gccatgacga gtacgccgag gcgatcatcg agacgttctc gatagagaag gttctcggac
      841 acgagtcctc gaactgagcg actgattcag cagctacttg ccgaaaagaa ttggagtctg
      901 cctccttctc aatctgcttg tcgatttgcg ctaattggtt cgactctaac aactggacca
      961 ctgatggaaa caacttctgc accactgcct ggctcggctc ctgatgaaat gttcccggtg
     1021 cttacaccgg agcaacaagg gcgtgtgctg acgcatggcc gtttaagaaa ggccgagagt
     1081 ggtgaaacga tcgtcgaacc gagtaaacca ggaatcaagt tctttgtggt agtttccggt
     1141 cggctcgaac tgcaacgagt ctcagacgat agagaggagc tgattgccc
//
LOCUS       DATCGC010000015         1389 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_299846, whole genome shotgun sequence.
ACCESSION   DATCGC010000015 DATCGC010000000
VERSION     DATCGC010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1389)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1389)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1389
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299846"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            149..>1389
                     /gene="ettA"
                     /locus_tag="VIJ87_00160"
     CDS             149..>1389
                     /gene="ettA"
                     /locus_tag="VIJ87_00160"
                     /inference="COORDINATES: protein motif:HMM:NF008775.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0045900 - negative regulation of
                     translational elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HEY5442901.1"
                     /translation="MSTEPNKVIYSMVGVSKFYDKKPVLKDIYLSYFYGAKIGVIGLN
                     GSGKSSLLRILAGVDKDFNGETVISPGFTVGYLEQEPLIDDSRTVREVVEEAVQETVD
                     LLKEFDEINTKFGEEMSDDEMSALLERQGEVQEKLDAQDAWDLDSRLEMAMDALRCPP
                     PDTQVKVLSGGERRRVALCRLLLQKPDILLLDEPTNHLDAESVAWLEHHLQSYAGTII
                     AVTHDRYFLDNVAGWILELDRGAGIPWKGNYTSWLEQKQERLRREEKSESERQKTLQR
                     ELEWIRMSPKARHAKGKARINSYEELLREETEKRREDLEIHIPPGPRLGNVVIQAEGV
                     DKGYGQNLLVEDMTFSLPPGGLVGVIGPNGAGKTTLFRMITGQEQPDGGTIRIGETVS
                     LAYVDQSRTLDSNKSIWEEITG"
BASE COUNT          381 a          355 c          365 g          288 t
ORIGIN      
        1 agcgaacagt cgtacgatgg agaagtcgca cgcgcccaaa ccgcgcaggc cgttctgtaa
       61 tcgcacccac cctgttatct gaccaaacaa gaagagtgtt actctaagtg acgccaaatc
      121 ccgttacgca tatattcata ctttttccat gagcacagaa ccaaacaaag tcatctattc
      181 gatggtcggc gtcagcaagt tttacgacaa gaagccggtc cttaaagaca tctacctctc
      241 ctacttttac ggcgccaaga ttggcgtcat cggattgaac ggatcgggca aatcttctct
      301 gctgcgcatt cttgccggcg tcgacaaaga ctttaacggc gagactgtca tttcacccgg
      361 attcacagtt ggctatctcg aacaagaacc actcatcgac gactctcgaa cggtccgtga
      421 agttgttgaa gaagccgtgc aggaaactgt ggatctgttg aaagagttcg atgagatcaa
      481 caccaagttt ggcgaagaaa tgagtgacga tgaaatgtcg gcacttctcg aacgacaagg
      541 tgaagtgcaa gagaaactcg acgcacagga tgcgtgggat ctcgattcgc gcctggagat
      601 ggccatggac gcgttgcgat gtccgccacc agacactcag gtgaaagttc tctctggagg
      661 tgagcgacgc cgggttgctt tgtgtcgtct actactgcaa aagcccgaca ttcttttgct
      721 cgacgaaccc acaaatcacc tcgacgcaga atcggtggcc tggctagaac accacctgca
      781 aagttatgcg ggaacgatca tcgcagtaac acacgaccgc tacttcctcg acaacgttgc
      841 cggctggatc ctcgaactgg atcgtggcgc cggaattccg tggaaaggaa actacacttc
      901 gtggcttgaa cagaagcagg aacgcttgcg ccgcgaagag aaatcggaaa gcgaacgaca
      961 gaagactttg caacgtgaac tcgaatggat tcgcatgtcg ccaaaagccc gacacgctaa
     1021 aggcaaagcg aggatcaact cttacgaaga actgctacgc gaggagaccg agaagcgtcg
     1081 cgaagatttg gagattcata ttccacctgg cccgcgcctt ggcaatgtcg tcatccaggc
     1141 agagggagtt gataagggct acggtcagaa tttgctcgtt gaagacatga cgttctcatt
     1201 gccgccggga ggccttgttg gcgttattgg tccaaacggc gccggcaaaa ctacactgtt
     1261 tcgaatgatc acaggtcagg aacaaccgga cggtggaaca attcgcatag gcgaaacagt
     1321 gtcgctggcg tacgtcgatc aaagcagaac actcgattcc aataaatcga tctgggaaga
     1381 gataactgg
//
LOCUS       DATCGC010000016         1425 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_466326, whole genome shotgun sequence.
ACCESSION   DATCGC010000016 DATCGC010000000
VERSION     DATCGC010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1425)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1425)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1425
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_466326"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(199..864)
                     /locus_tag="VIJ87_00165"
     CDS             complement(199..864)
                     /locus_tag="VIJ87_00165"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamG domain-containing protein"
                     /protein_id="HEY5442902.1"
                     /translation="MKLKAWKCFAVLLIVVVSSFGQKQSKSTTWKVDNVDKIGGQEVT
                     VSGHPQIIEAPGGKAIAFDGVGDSLLLNANPLAGAEAFTLEAVFRPDAGGAKEQRWFH
                     VQEDNSENRVLLETRLVGDEWFLDTYIRSGENNRPLLAENFKHPVGAWYHVALVFDGK
                     EMRHYVDGRLEMSGPLTIKPLAAGKTSIGVRMNRVYWFKGAVQKARFTKRALQPNEFM
                     KKK"
     gene            complement(1037..>1425)
                     /locus_tag="VIJ87_00170"
     CDS             complement(1037..>1425)
                     /locus_tag="VIJ87_00170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442903.1"
                     /translation="GDGFGLYRFNADQPQVRPVVDVVPLRREYERIAAQTKQEARAEY
                     EKRHSHWNADAVNRAGRTTSIEDIIKALDNRGAWLGNCRVLTVVPRSEGINPGTFEII
                     RGYSTSTFVRNMRALIDYVTTTKGTD"
BASE COUNT          310 a          420 c          333 g          362 t
ORIGIN      
        1 gaacttagga cgcctcgccg catcagctcc cagcgcgccc ccgcagagac tcactttgga
       61 ccaactaaag tattttgtat ggcaactcag cgggggcgcg ctcggggtca atgatgtgaa
      121 gcgccctaat ttccgcttgc ccccttccca gcttgttcaa tgcacgtgat cgccccaacc
      181 tttggctatc acctttcctt acttcttctt catgaactcg ttcggctgca gggcacgctt
      241 tgtgaagcgc gctttctgaa ccgcgccctt aaaccagtag acacgattca ttcgcactcc
      301 tatcgatgtc ttgcctgccg ccagtggctt gatcgtcagc ggtcccgaca tctctaacct
      361 tccatcaacg taatgccgca tctccttgcc gtcgaaaact agcgccacgt gataccaggc
      421 accaaccggg tgcttgaagt tttcagccaa gagcggccgg ttgttttcac ccgatcggat
      481 ataggtatca agaaaccatt cgtcacccac caaacgtgtt tcgagcaaaa ctcggttctc
      541 gctgttgtcc tcttgtacgt gaaaccaacg ctgctctttt gcgccacccg catcgggacg
      601 aaaaaccgct tcgagggtaa aggcttcagc acccgcaagc ggattcgcat tcagtaacag
      661 gctatcgcca acaccatcaa atgcgatcgc tttaccgccg ggagcctcga tgatttgcgg
      721 atgtccgctg acagtcacct cttgaccgcc gatcttgtca acgttgtcga ctttccaggt
      781 agttgatttt gattgcttct gtccaaagct gctgacaaca acgatcagca gcacagcaaa
      841 acatttccag gctttaagct tcatagattt tcagttaccg gcacgatcaa tcggtcatgt
      901 cttacttgag agtctctgcg caacctctgt gttctctgcg tctctgcggt gttgattgag
      961 actgccttat taaaccgcag agccgcagag gacgcagagg tttcgcaaag aagaacccgg
     1021 atttggacac aactaatcaa tccgttccct tggtagttgt aacgtagtcg attaacgctc
     1081 tcatgtttct tacaaaggtc gacgttgaat acccgcgaat tatctcaaac gttccaggat
     1141 tgattccctc gcttcgcgga acaacagtta ggacccgaca gttacctaac caggcgccgc
     1201 gattgtccaa cgctttaatg atgtcttcga tcgaagtggt gcggccggcc cgattcaccg
     1261 catccgcgtt ccaatggctg tgacgcttct cgtattctgc acgcgcctct tgcttcgttt
     1321 gtgctgcaat gcgttcgtac tctcggcgaa gggggacaac gtcgacgacc ggcctcactt
     1381 gaggttggtc ggcgttgaag cggtaaagtc caaaaccgtc acctt
//
LOCUS       DATCGC010000017         1392 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_33485, whole genome shotgun sequence.
ACCESSION   DATCGC010000017 DATCGC010000000
VERSION     DATCGC010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1392)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1392)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1392
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33485"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            262..>1392
                     /locus_tag="VIJ87_00175"
     CDS             262..>1392
                     /locus_tag="VIJ87_00175"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR02032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY5442904.1"
                     /translation="MTNFDLLIIGAGPAGSFAAELLAQGGANVALFDGRPPGEPKACG
                     GGVTGKALKTWPHLLNAVGRTINELDLYSPSGKKLHLELDEPFAIYSRLAFDSYLRER
                     ARDAGAKVFNEKISMRKSKRAAAAWTLKSESNAEFTGRILVGADGANSGVGKNLAGPL
                     SASDMEVAFGYRAPLPADGEAPTVVAFLPRWIGYAWAFPRPDHISFGIATTQDAFQHQ
                     PLDDLLWQFMIGYYSESGDTKRKFWANNSDQTQGIRQHLEQTAERYAARIPGLADKTW
                     ETRRVCGEDWALLGDAAGFADPVTGEGIYYALRSAQIFAECYLSESLTDYETRWRTDF
                     GAELRRASQMRRRFYGNFWGAPFTERMIEFARGHKGVKRVLGE"
BASE COUNT          336 a          357 c          373 g          326 t
ORIGIN      
        1 tgcaatgcca gcgaagacta gaaagctatt cgtggacatc gttattgagc cactacaaag
       61 aaatcagatc tggacaatta ggacgaagac attctagcgc ctctagtaga ttgaacaagc
      121 tgggaagggt gtccgatatg ctttagcttg tcgtctgttc agctaagagc gccctgtgca
      181 gatcgctttg gcaagctaaa gcatattgga ctctctctat tatgacttcg acaatccgat
      241 ctcttacact cgcatctatc aatgacgaat tttgatctac tcattatcgg cgcaggtcct
      301 gccggatcgt tcgctgctga actactcgca caaggtggcg caaatgtcgc tttatttgat
      361 gggcgaccac cgggcgagcc gaaggcgtgc ggtggagggg ttactggcaa agctctaaag
      421 acttggccac acctactcaa tgcggtcggt cgaacaatca acgaactcga cctgtactca
      481 ccatcaggca agaaacttca tctggagttg gacgagccat tcgcgatcta ctcgcgactc
      541 gctttcgact cttacttacg cgaaagagca cgtgacgccg gcgcaaaagt cttcaacgaa
      601 aagatctcaa tgcgaaagtc gaaacgagcc gcagccgcgt ggacgctcaa gtccgaatcc
      661 aatgctgaat ttaccggccg aatactagtt ggggctgatg gcgcaaacag tggtgtcgga
      721 aagaatctgg cgggcccgtt gtctgcgtcg gatatggagg tcgcctttgg ttatcgggcc
      781 ccattgccgg cggacggtga agccccgaca gtggttgcgt ttctacctcg ttggattggt
      841 tacgcatggg cttttccacg accggaccat atttcgtttg gcatcgccac aacccaggac
      901 gcgttccagc accaacctct cgacgatctt ctttggcagt tcatgattgg ttattactct
      961 gaatccggtg acaccaaacg aaagttttgg gcgaacaatt cagatcaaac ccagggaata
     1021 agacagcacc ttgagcaaac tgccgaacga tatgcagcac gtattcccgg cctggcagac
     1081 aaaacctggg agactcgcag agtttgtggt gaggattggg ccctgcttgg cgacgccgca
     1141 ggctttgctg atccggtgac aggtgaaggt atctattacg ccttacgctc cgctcaaatt
     1201 ttcgcggagt gttacctgtc tgaatctttg actgactacg agacacgctg gcgaactgac
     1261 ttcggcgcag aattacgacg cgcctcgcaa atgcgtcgac gcttctacgg caacttttgg
     1321 ggcgcgccgt ttacggaaag gatgatcgag tttgcacgag gccataaagg tgtaaagcgt
     1381 gtactcggcg ag
//
LOCUS       DATCGC010000018         1939 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_100089, whole genome shotgun sequence.
ACCESSION   DATCGC010000018 DATCGC010000000
VERSION     DATCGC010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1939)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1939)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1939
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100089"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..645
                     /locus_tag="VIJ87_00180"
     CDS             <1..645
                     /locus_tag="VIJ87_00180"
                     /inference="COORDINATES: protein motif:HMM:NF013279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HEY5442905.1"
                     /translation="VGSVLTYIPILAVVLFLSAIRLRLVIAAVALAVVMIPVSYWVGV
                     KTNLIKNYQQERINVILDPENADRRRIGYHTWQSILTVGEGGLFGSRSSAEHSQSGLK
                     FLPEPHTDFIYAVTAENYGFIGCVLVLLAYMVLLSRLITGARRSSDRSGMLFIMAVVG
                     GFTFQIFINIGMALGISPVIGVPLPLMSAGLASLIATFIAIGFAISVQLRRFVN"
     gene            685..1716
                     /locus_tag="VIJ87_00185"
     CDS             685..1716
                     /locus_tag="VIJ87_00185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442906.1"
                     /translation="MSFPTTQFAFIETPVLIALLGAGASLVLSCVTAYFSYRAKIKES
                     ELSDLNAEKKARRDYEYDARKRLYSECEPLLFELYQLSLGGMKRVGSLARTAREGNLT
                     NDSNSWLADDGYYMLSTIYKLFAPLALVKIIQRRITLVDLSLDSRIKRQYLLANNLYQ
                     TFSSDFKLASLPPPIPYDPDSRSADYAQKVQEKPHIYKRQGLPVGLLDNVVDALIVSD
                     KRSPARCLSFGEFETKYQDKSSDVHKTFASVVGLFLNFHPATRPVLWRILITQLHLNK
                     AILAESEMDFEPHNAPHALIKIPTKDRLGRYNWRSKESTVPDSDLEQPFDVAEKFLNK
                     RLGKMFSEE"
     gene            1752..>1939
                     /locus_tag="VIJ87_00190"
     CDS             1752..>1939
                     /locus_tag="VIJ87_00190"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEY5442907.1"
                     /translation="MSKVIQAAGGLLWRKSDAGKQIALIHRPRYNDWALPKGKLEKGE
                     EWETAALREIEEETGCKA"
BASE COUNT          475 a          492 c          480 g          492 t
ORIGIN      
        1 gtcggttccg tgctcaccta cattccgatc ctcgccgtag tcctgtttct atctgcaatt
       61 cgtttacgtc ttgtgatagc tgctgtggcc cttgctgtcg ttatgattcc ggtttcttac
      121 tgggttggag tcaagacaaa cctcatcaaa aactatcagc aggaacgcat caacgttatc
      181 ctcgatccgg agaacgccga ccgacgtcgt attggttacc acacatggca gtcaattctg
      241 accgtgggcg aaggggggtt gtttgggtcg cgatcatcag ctgaacattc acaaagcgga
      301 ctgaagtttt tgcccgaacc gcacaccgat tttatttacg cggtcaccgc tgaaaactac
      361 ggcttcattg gttgcgtatt ggtgctctta gcctacatgg tcctcctatc gcgcttgata
      421 acaggcgcga ggcgatcttc ggatcggtcc ggcatgctgt tcatcatggc agttgtcggt
      481 ggcttcacgt ttcagatctt catcaacatc ggaatggcat tgggaatttc accggttatt
      541 ggagttccct tgccgttaat gagcgcgggc ctggcgtcgc tcattgcgac ctttatagcg
      601 attggctttg ctattagcgt gcagttgcga cgctttgtga attgaatact tcaaacggtc
      661 tcactgtgac taggaatgcc aacagtgtct ttcccgacca cccaattcgc attcatcgaa
      721 actcccgtac tgatcgcgct gctgggcgca ggcgcttccc tcgtcttgtc gtgtgtcact
      781 gcttacttct cctatcgggc aaaaattaaa gagtcagagc tttcggatct aaacgcggaa
      841 aagaaggctc gccgcgatta cgagtacgat gcgcgaaagc gtctctattc agagtgtgag
      901 ccactgctgt ttgagttgta tcaactatcg ctaggtggaa tgaaacgcgt cggaagcctt
      961 gctagaacag cgcgcgaggg caacctcaca aacgattcga atagctggct agcggatgac
     1021 gggtattaca tgttatccac aatctacaag ctctttgctc cgctcgcgtt ggtcaagatc
     1081 attcaacggc ggattacact tgttgatttg tctcttgact ctagaatcaa gagacagtat
     1141 ttgcttgcga acaatcttta ccaaactttc tcatctgatt ttaagttagc cagcctgcct
     1201 cctccgattc cctacgaccc tgattccaga agcgctgact atgcccagaa ggtccaggag
     1261 aagccacaca tttacaagcg ccaggggtta ccggttggct tactcgataa tgtagtagac
     1321 gctttgattg tttcagataa aagaagcccg gctcgttgtc tcagttttgg tgagtttgag
     1381 acaaagtacc aggacaagtc gtccgacgtt cacaaaacgt tcgcaagcgt cgtcggcctg
     1441 ttcctgaatt ttcatcccgc aacgcgcccg gtcctgtggc gaattcttat cacccaactc
     1501 catctcaaca aggctattct tgcggagagc gaaatggatt ttgaaccgca caatgctccg
     1561 catgcactca tcaaaatacc caccaaagac aggttgggcc gttacaattg gcgctcaaaa
     1621 gaatcgacag tgccagacag cgatctcgaa cagccatttg acgtggcgga aaagtttctc
     1681 aacaagcggc tcggtaaaat gttttcagaa gagtagtatc tctgaacaca gcaagcggca
     1741 gaaaagatca tatgagcaaa gtaattcagg ctgcgggtgg actactctgg cgcaaatccg
     1801 acgccggcaa acaaatcgcg ttgatacatc gaccgcgcta caacgactgg gccttaccga
     1861 aagggaaact tgagaaaggt gaagaatggg aaactgcggc gttgcgcgag attgaagaag
     1921 aaaccggatg caaggccca
//
LOCUS       DATCGC010000019         1147 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_268, whole genome shotgun sequence.
ACCESSION   DATCGC010000019 DATCGC010000000
VERSION     DATCGC010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1147
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_268"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..311
                     /locus_tag="VIJ87_00195"
     CDS             <1..311
                     /locus_tag="VIJ87_00195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442908.1"
                     /translation="EVKGLAVIKGEAQQIKIGVLIDLKLDENSVQSPIASGKPTSMIT
                     RNSGQLKVCSRPVFCRNPSQSYTFRMSPWPEPAIESPPPAARYRLAQLARGGGKWFGI
                     "
     gene            495..764
                     /locus_tag="VIJ87_00200"
     CDS             495..764
                     /locus_tag="VIJ87_00200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442909.1"
                     /translation="MAIIITCCAERGHALTFSDDFVVYVGDRSSPGDFDPYYNQPKIY
                     RQPRYYESTSKKTKGKRVFKTTKVKDQYGNTIYKKTTSHKKKKKH"
     gene            774..1121
                     /locus_tag="VIJ87_00205"
     CDS             774..1121
                     /locus_tag="VIJ87_00205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442910.1"
                     /translation="MKFRVFLFVLLSVANAFASDLDFTLVNQTSRSFEGLYITAPDNK
                     DWDANLLLNGKVLAAAAKIRVRFKNDAKSETWDFNMVDDEGLSVTFKKVDLAGVDTVT
                     LKDVNGKITAEVE"
BASE COUNT          294 a          307 c          282 g          264 t
ORIGIN      
        1 ccgaagtcaa aggcctggcc gtcatcaaag gagaggcgca gcaaattaag attggcgtcc
       61 ttatcgatct gaaattggac gagaattcgg tccaaagtcc gatcgcatcc ggaaaaccca
      121 cctccatgat cacgaggaat agcggccagc ttaaggtttg ttctcgaccg gtgttctgta
      181 ggaatccttc tcagtcatac acgttccgta tgagcccatg gcctgagcct gcgatagagt
      241 caccgccacc tgctgcgcgt tatcgtctcg cgcagctcgc gcgcggaggc gggaaatggt
      301 tcggaatata ggaggagcct caccaactcc gtgtgaccct cttgactctt cccggttgga
      361 tgtctcaaga attgggcaga attcgcggtc gacgatcggc gatcttcgcg cagggctaat
      421 ttccctttga ctccgcgaag cgctcctgct agacgaatgg cgtgactctt cgctccctct
      481 cacagatggt aatcgtggct attattatca cctgttgtgc cgaacgaggc catgctttga
      541 cattctccga cgatttcgtc gtgtatgtgg gtgaccggtc ttctcctggt gacttcgacc
      601 cttactacaa tcagcctaaa atctaccgcc aaccacgcta ttacgaatca acaagcaaga
      661 agaccaaagg caaaagagtg ttcaagacta caaaggtgaa ggaccaatac ggtaacacga
      721 tttacaaaaa gaccacttct cacaagaaga aaaagaaaca ctagtccgca ctcatgaaat
      781 ttcgtgtttt tctcttcgtc ctcctaagcg tcgcaaacgc attcgcgtcc gatctcgact
      841 tcacgctggt gaaccagaca tcccgaagct ttgaaggtct ctatatcacc gcccctgaca
      901 acaaggattg ggacgcaaat ctccttctca acggaaaagt gctggctgct gcggcaaaga
      961 tccgcgtgcg cttcaagaat gacgcaaaat cagaaacctg ggatttcaac atggtggacg
     1021 acgagggact ctcagtaacc tttaagaagg tagatcttgc aggcgttgac acggtcacgt
     1081 tgaaggacgt caacggtaag atcactgcgg aggttgagta ggtcccgaac ttcttcctgg
     1141 ttgaacc
//
LOCUS       DATCGC010000020         3222 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_100095, whole genome shotgun sequence.
ACCESSION   DATCGC010000020 DATCGC010000000
VERSION     DATCGC010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3222)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3222)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3222
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100095"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            162..1280
                     /gene="carA"
                     /locus_tag="VIJ87_00210"
     CDS             162..1280
                     /gene="carA"
                     /locus_tag="VIJ87_00210"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003280874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005951 - carbamoyl-phosphate synthase
                     complex [Evidence IEA];
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HEY5442911.1"
                     /translation="MIKKAPALLALEDGRTFRGRSWAADGEACGEIVFNTSMTGYQEV
                     LTDPSYAGQIVCMTYPLIGNYGVNEADSESSRPWVEGFVVREASRITSNWRAEESLAD
                     YLKRWNIVAIEGIDTRALVRHIRDKGAMRACLSSIDTDEKSLVEKALQSPPMDNRELA
                     SVVTTKEPYEFPAEGEERFHVVCYDYGVKRNSLRELAQLGVRTTVLPAATSATDALAF
                     KPDGIFLSNGPGDPASMNREVEEIKQLLNAKVPLFGICFGHQLLGRAFGGSTFKLVFG
                     HRGGNQPVKEVSGRGVEITSHNHGFAVDAETLPADVEVTHINLNDQCVEGMRHKTLPV
                     ISVQYHPEAAPGPHDAQHHFKRFVALMEKQKTYLGLRA"
     gene            complement(1325..2674)
                     /locus_tag="VIJ87_00215"
     CDS             complement(1325..2674)
                     /locus_tag="VIJ87_00215"
                     /inference="COORDINATES: protein motif:HMM:NF013740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEY5442912.1"
                     /translation="MNKQETKEAATTAARAAAEAVGPPTRVVLRVIFIIIFVAVVLWI
                     VFKLTGVILLLVLSIFFAYLVSPLVDFIRRPRRLGQRELKIPRGISILIAYLLILGAI
                     VFAVLVVLPTLSNQFPEFATQAKGYWKTLGEKSQQLNEYFRSRRMPGPIVDAANNAIP
                     KIIEKISAVASELVTGSLAYLAFLPWLVLIPLLAFFLLKDVDSFRRSALQMLPRGRWR
                     WRGDEFFQDVNSTLAAYTRAQLTACLIIGLLCSLGFTLLGLPGGLVMGLIAGVFEFVP
                     MVGPLLIAVMAALLALLHAGPFNAFLVLLFLGVLRIAQDYFIYPRLIGQGIHLHPLAV
                     IFAILSGAELAGVAGVFLAIPVVAILTVSYRHWMEHRGSEGLADLLEPTSTTAAPVVS
                     GEVIAKQQLPQQTVQHERSVQIHPHHHSEGHPDIDTTPEEMAQQRPDLTTGELKLPE"
     gene            complement(2684..3049)
                     /locus_tag="VIJ87_00220"
     CDS             complement(2684..3049)
                     /locus_tag="VIJ87_00220"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HEY5442913.1"
                     /translation="MTTPDAHEMSPHDRRKFPRYYVFSRLMLAIEDETLRESIGIGEP
                     ADISLGGVRVRNLPACPTVQIGDQLGLLLLDTDDSLSLSGEVVHHGTSDTFGVQFREL
                     TAGQQKAVEDMIGRLHSRL"
BASE COUNT          825 a          816 c          851 g          730 t
ORIGIN      
        1 ggaagattgg tcatctatca ttttctcatt tatcattttt ctcgtgtcgg gaagggacgt
       61 aatagcccga aggttttcaa atgacaaatg agaaatggaa aatgatatat gaccaatgaa
      121 aaaggccaat cactccacca caatcgagag cgtctataaa gatgatcaaa aaagcacccg
      181 cactgctagc cttagaggat ggccgcactt ttcgtggtcg atcctgggct gccgatggag
      241 aggcgtgcgg tgagattgtt ttcaacactt caatgacggg ataccaggaa gtgctcaccg
      301 atccttccta cgctggtcaa atcgtctgca tgacgtatcc cctgattggg aactacggcg
      361 tcaatgaagc cgattcggag tcgtcgcgtc cgtgggtcga aggattcgtt gtgcgcgaag
      421 cgagtcgcat tacgtcaaac tggcgagcgg aggaaagtct cgccgactat ttgaagcgtt
      481 ggaatattgt cgcgattgaa ggtatcgaca cgcgagcact cgtacgccac attcgcgaca
      541 agggggcgat gcgagcttgc ctttcgagta tagatactga tgaaaagagt ttggttgaaa
      601 aggcgctcca atcgccgcca atggacaacc gggagttagc gagtgtcgtt accaccaagg
      661 agccgtacga gtttcccgca gaaggcgaag agcgattcca tgtcgtctgt tacgactacg
      721 gagtgaaacg gaactcgtta cgcgaactcg cacagctggg agttcggacg acggttttgc
      781 ctgcggctac ttcggcaacc gatgcacttg ccttcaagcc tgacggtatc ttcttatcaa
      841 atggcccggg tgatcccgcg tccatgaatc gagaggttga ggagatcaaa caacttctaa
      901 acgccaaggt tccgttgttt ggaatttgtt ttggacacca gttgttgggt cgagcgtttg
      961 gaggatcgac tttcaagctc gtctttggtc accgcggtgg gaatcaaccg gtcaaagaag
     1021 tttcgggtag gggcgttgag attacgtcac acaatcacgg gtttgcggtg gatgccgaaa
     1081 cacttccagc agacgttgag gtgacgcaca tcaatctcaa tgatcaatgc gtggaaggca
     1141 tgcgccataa aactttgccg gtgatttcag ttcagtatca tcctgaagct gcaccaggcc
     1201 ctcacgatgc gcaacatcat ttcaagagat tcgtggcatt gatggagaag cagaagacgt
     1261 acttgggcct tcgggcctag gttttaccct tgggagtggt cttctatagc ccgcttcgcg
     1321 ggctttattc cggcagcttt aattcaccag tggtcaaatc gggacgttgc tgggccatct
     1381 cttccggcgt ggtgtcgatg tctggatgtc cctcactatg gtggtggggg tgaatctgta
     1441 ccgagcgttc atgctgtaca gtctgctgag ggagttgttg tttagcaatt acttctccgc
     1501 ttacgacagg agccgcggtc gttgaggtgg gctctaaaag atctgctagt ccctcactac
     1561 ctcggtgttc catccagtgt cgataactca cggtcaggat ggctaccacg ggaattgcca
     1621 aaaacactcc cgcaacgcca gccagctcag ctcctgagag gatcgcaaaa atcacggcga
     1681 ggggatgaag atggattccc tgtccaatca aacgagggta gatgaagtag tcctgcgcga
     1741 ttctcaaaac tccaagaaac agcaaaacga gaaatgcatt gaacggacct gcatggagaa
     1801 gagccaacag tgcggccatc actgcaatta gtaacggacc aaccatcggg acaaactcaa
     1861 agacgccggc aataagaccc ataaccaagc caccgggtaa accaagcagc gtgaacccca
     1921 aagagcacaa taatccaatg atcaggcagg ccgttagttg tgctctcgta tacgccgcaa
     1981 gcgtcgagtt cacatcctga aagaattcat ctccacgcca acgccagcgt ccccgcggca
     2041 acatttgtag cgctgaacgt cggaagctat ccacatcttt caggagaaag aaggccagta
     2101 aaggaatcaa gaccagccag ggtaagaacg cgaggtaggc aagagaacca gtaacaagct
     2161 cgctcgcaac ggcactgatc ttttcaatta ttttgggtat cgcattattc gcggcatcga
     2221 cgatgggtcc gggcatccgg cgcgaacgaa aatactcatt gagttgctgc gacttctcac
     2281 ccagggtttt ccagtaaccc ttcgcttgag tcgcaaactc aggaaactgg ttactcagag
     2341 tcgggagcac aacgagaact gcgaacacga ttgcccccag gatcaacaga taggcaatta
     2401 agatcgaaat acccctgggt attttgagtt cccgctggcc taagcgtcgc ggtcgccgaa
     2461 tgaagtcgac gagtggtgac accagatacg caaagaagat cgacagtact aagaggagaa
     2521 ttaccccagt cagcttgaag actatccaaa gaacaacagc gacaaagatg atgatgaaaa
     2581 taacgcgcag aaccacgcgt gtcggtgggc cgacagcttc cgcggccgcc cgcgctgcgg
     2641 tcgttgccgc ttctttggtt tcttgtttgt tcaagctgct ttgttaaagg cgcgagtgta
     2701 aacggccgat catatcttca acagctttct gttgccctgc cgttagttct cgaaattgaa
     2761 ctccgaatgt atcggaagtt ccatgatgaa ctacttcgcc acttaaagac agggaatcgt
     2821 cggtatcaag caacaatagt ccgagctgat caccaatctg gacagtcgga caagccggaa
     2881 gatttctcac ccgcacacca ccgagactga tatcggccgg ttcacctatg ccaatcgatt
     2941 ctcgtagtgt ttcatcttcg atggccagca tcagacgtga aaaaacgtag tagcgcggaa
     3001 acttccgccg atcatgtgga gacatctcat gagcatcggg ggttgtcata agttgaagcc
     3061 tcagtgtgtc agatcatcat cgtcttccgc gtctacatcc acctcaccct cttctggtgg
     3121 cggcggcgga gcgacccgcg gtgcggccgg ctcccaaaca agtcccttcc attcctctgt
     3181 ttcacccaat aattgcaagg ctgctaatgg atgacccggg tt
//
LOCUS       DATCGC010000021         1102 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_266622, whole genome shotgun sequence.
ACCESSION   DATCGC010000021 DATCGC010000000
VERSION     DATCGC010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1102)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1102)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1102
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_266622"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(351..764)
                     /locus_tag="VIJ87_00225"
     CDS             complement(351..764)
                     /locus_tag="VIJ87_00225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442914.1"
                     /translation="MTSSAFIGNVFSVRVVEMVPVAVVEIVPVRVVEMVPVAVVEIVP
                     TRVVEIVPVFERAVPVRAKVKINDNIDSLKFRIAVLLVFKRQGLGRLKNTLPWKASFL
                     GRPFQNLRSVFLLSMHVPTAEGESQWALSLTKGVL"
BASE COUNT          298 a          284 c          232 g          288 t
ORIGIN      
        1 gcatccactt tcgtaatccc ctgtttcaag cttttcacga gcgattgcgc agcaagcgag
       61 cgctcgctca ctttcagcca gagatgctgg aagaacgtct tgaaagacat tcatctcgct
      121 ctttacgtac ctgccgctct ctcgtagatt cgttgattgc atacaaagta accattgata
      181 caagcgtata cagaaccctt tgaaatcaca gtcgagaaca atttcgcatg ctttgcttaa
      241 ttatttgtgg cattccgctc gatgtcgtcg cgctgccggt aggatgaata ctaaataatc
      301 aactctggcc agtctttatt gggtgtcatt ctctcgtttc gacagtaccc ttaaagcaca
      361 cctttagtta gacttagagc ccattgagat tccccctcag ctgttggcac gtgcattgat
      421 aatagaaaga ccgaacgtag attttgaaat ggccgaccca agaaactagc tttccacggc
      481 agagtgttct tgagtcgacc gagcccctga cgtttgaaca ccaggagaac agcgatgcga
      541 aacttcaaac tatcaatgtt gtcattgatc ttaaccttgg ccctgactgg aaccgctctc
      601 tcgaaaacgg gtacaatttc aacaactcgg gtaggcacga tctcaacaac ggcgaccggc
      661 accatctcta ctactcgcac cgggactatc tcaacaacgg cgaccgggac catctcaaca
      721 actcgaactg aaaatacatt tccaataaac gctgaactag tcaaaagtct tggtaccgac
      781 gtcgttttct tgctcttaac gatttggtaa gagccaagtc aacttgaacg cttaggtcag
      841 aacgctctac tgtttctatc aaggatcagt caaactggaa gaattcacct ttcttaggcg
      901 cttcctaaac aatgagtggc aaccaatatg ccgcagatag gatttgagat ggtttctaaa
      961 tccaacaccc cgacccttgt ggttgcatcg atacaagaag ggcgtacgag acagaactac
     1021 agcgccccgc tgagaggttt tatctttcca gtgggttgtt gattctcaca accggctatg
     1081 atcggtgcct attagtccaa ga
//
LOCUS       DATCGC010000022         4945 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_466359, whole genome shotgun sequence.
ACCESSION   DATCGC010000022 DATCGC010000000
VERSION     DATCGC010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4945)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4945)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4945
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_466359"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(24..329)
                     /gene="rplW"
                     /locus_tag="VIJ87_00230"
     CDS             complement(24..329)
                     /gene="rplW"
                     /locus_tag="VIJ87_00230"
                     /inference="COORDINATES: protein motif:HMM:NF004363.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HEY5442915.1"
                     /translation="MRTVWDIIKSPVITEKALVAKEETQDKQQLLTFRVDRHATKPEI
                     KSAVETIFQVKVDHVRTINFMGKTARRGRYEGRKPSWKKAYVTLKQGEKPVDYGEAV"
     gene            complement(332..1060)
                     /gene="rplD"
                     /locus_tag="VIJ87_00235"
     CDS             complement(332..1060)
                     /gene="rplD"
                     /locus_tag="VIJ87_00235"
                     /inference="COORDINATES: protein motif:HMM:NF012782.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HEY5442916.1"
                     /translation="MPTVKVHNLKKEEVGEVQLSDAVFGAPLNEPLIHAAVRNFMANA
                     RQGTSATKTRGDVSGSGRKLWKQKGTGRARIASLRSPLWKGGGNVHGPQPRDWSYNMP
                     KKMRQGALRSALSERVREGNVFVVEGWTMDKPKTKDFSTSLGKLGLNGKTLIVDSLEN
                     ENLILSARNVRRAKVVNSFGLNIYDLLYHDHLVLSRTAAAEIDRLLGSRKDGEEVAPV
                     EGAPAEEAPAKPKRARKPKKEEAA"
     gene            complement(1070..1717)
                     /gene="rplC"
                     /locus_tag="VIJ87_00240"
     CDS             complement(1070..1717)
                     /gene="rplC"
                     /locus_tag="VIJ87_00240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016275270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HEY5442917.1"
                     /translation="MNGIIGRKIGMTQIFAPDGTVTPVTVIKAGPCVVVQKKSAAGPD
                     GYDAVQLGLVDENPLKLKNVTKPMRGHFEKTGGGIPPTRILKEFRLSASDDSTNVGDK
                     ILVDQFADGEKVDVIGKSKGRGFAGTIKRHNFNRGPESHGSMNVRAPGSIGASAYPSR
                     VIKGTRSSGHMGDERVTIKGLTVARVDAENNLLMIRGAVPGAFGSVVIVRKVSKK"
     gene            complement(1817..2134)
                     /gene="rpsJ"
                     /locus_tag="VIJ87_00245"
     CDS             complement(1817..2134)
                     /gene="rpsJ"
                     /locus_tag="VIJ87_00245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014268624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HEY5442918.1"
                     /translation="MNEKIRIRLKAYDHRVLDQSTTEIVETAKRTGARVAGPIPLPTV
                     KNKWTVLRSPHVDKKSREQFEIRTHKRLMDILDPTPQTVDALMKLDLPAGVDVEIKAF
                     GRQ"
     gene            complement(2216..3403)
                     /gene="tuf"
                     /locus_tag="VIJ87_00250"
     CDS             complement(2216..3403)
                     /gene="tuf"
                     /locus_tag="VIJ87_00250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003640798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HEY5442919.1"
                     /translation="MSKEKFDRSKPHVNIGTIGHVDHGKTTLTAAITKVLAKNNPKVQ
                     FVAFDQIDKAPEEKARGITIATAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMDG
                     AILVVAATDGPMPQTREHILLARQVGVPAMVVFMNKADAVDDAELLELVELEVRELLS
                     AYEFPGDDIPVIKGSALKALEGDPEWEKTVLELMDAVDSYIPTPERDIEKPFLMPVED
                     IFTIQGRGTVATGRVERGKVKVNENVEIVGIKPTRTTVCTGVEMFKKLLDEGVAGDNV
                     GLLLRGVERKDIERGQVIAKPGSITPHTKFKAEAYVLTKEEGGRHTPFFTGYRPQFYF
                     RTTDVTGVAALPAGVEMVMPGDNVAMEIELIAPIAMEKGLRFAIREGGRTVGAGTVSE
                     VIE"
     gene            complement(3458..3532)
                     /locus_tag="VIJ87_00255"
     tRNA            complement(3458..3532)
                     /locus_tag="VIJ87_00255"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3498..3500),aa:Thr,seq:ggt)
     gene            complement(3556..3631)
                     /locus_tag="VIJ87_00260"
     tRNA            complement(3556..3631)
                     /locus_tag="VIJ87_00260"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3596..3598),aa:Gly,seq:tcc)
     gene            complement(3743..3830)
                     /locus_tag="VIJ87_00265"
     tRNA            complement(3743..3830)
                     /locus_tag="VIJ87_00265"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3794..3796),aa:Tyr,seq:gta)
     gene            complement(3849..3924)
                     /locus_tag="VIJ87_00270"
     tRNA            complement(3849..3924)
                     /locus_tag="VIJ87_00270"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3889..3891),aa:Thr,seq:tgt)
     gene            4194..>4945
                     /locus_tag="VIJ87_00275"
     CDS             4194..>4945
                     /locus_tag="VIJ87_00275"
                     /inference="COORDINATES: protein motif:HMM:NF027852.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlgT C-terminal domain-containing protein"
                     /protein_id="HEY5442920.1"
                     /translation="MSRNPLYIVGCLVVLTLTFTTDSKSQSLSTGNNQIVAQQPASPQ
                     VVVPEGRGNARVAGRTNLYCAGYIKYQRFVSSPEIVGAESEPEQRTFAEGDTVYLNWG
                     AQQGIKQGQRFQIVRPKGDVKGVFREKKGYLGTYVRELGQLEVFKVNEHTSVAQITFS
                     CEMVLLGDLVVPVPYRESPLEKTTAFDRFSDPTGKPVGRLMMARDNREMVSMNDVVYI
                     DLGSEDKIAPGDYLTIFRPLGAGGITTVDAEE"
BASE COUNT         1109 a         1482 c         1148 g         1206 t
ORIGIN      
        1 gcaattggca atcggcaata ccgttagacc gcttcgccgt aatcaaccgg cttctcaccc
       61 tgtttgagcg tgacgtacgc ctttttccag gatggcttgc ggccttcgta gcgaccgcgt
      121 cgagcagtct tgcccatgaa gttaatcgtt ctcacatgat caactttgac ctgaaaaatc
      181 gtctcgaccg ccgacttgat ctcaggcttg gtggcatgtc gatcgactcg gaaggtcaac
      241 agttgctgct tgtcctgagt ctcctctttt gcaaccagcg ccttttccgt gatcaccggc
      301 gacttgatga tgtcccaaac tgttctcatc tttaggccgc ctcctctttc ttaggcttac
      361 gcgctcgctt cggttttgcc ggcgcctctt cagctggagc accttcaacc ggggccactt
      421 cttcaccgtc tttacgcgaa cccaacaacc gatcaatctc cgcagccgcg gttcgcgaca
      481 acaccagatg atcgtgataa agaaggtcgt agatgttcag cccaaaactg ttcaccactt
      541 ttgcccggcg aacattgcga gccgacaaaa tcagattctc gttctcaagt gaatcgacga
      601 ttagggtctt tccattcaaa ccaagcttgc caagtgacgt ggaaaaatcc ttcgtctttg
      661 gcttgtccat cgtccagcct tcaaccacaa atacattgcc ttcgcggacg cgctccgaaa
      721 gtgctgaacg cagggcgccc tgacgcattt tctttggcat gttgtaagac caatcacgtg
      781 gctgcgggcc atgaacatta ccgccgccct tccacaatgg tgaacgaagc gatgcgattc
      841 gagctcggcc agtgcccttc tgcttccaaa gcttacgtcc cgaaccagaa acgtctccgc
      901 gagtcttggt cgccgacgta ccctggcgag cattcgccat gaagtttcta accgcggcgt
      961 gaatcaaggg ctcattcaac ggcgccccaa acacagcatc ggacagctgg acctcgccaa
     1021 cttcttcctt tttcaggttg tgcaccttaa ctgtcggcat aactaactcc tactttttcg
     1081 aaaccttgcg cacgatgacg acgctgccaa aagctccagg caccgctcca cgaatcatca
     1141 gcaaattgtt ttcagcatcg acacgcgcaa cagtcagccc tttaatcgtg acgcgctcat
     1201 cacccatgtg tcccgacgac cgtgtgccct tgataactct ggagggatac gcggatgcgc
     1261 caattgaacc tggcgcacga acgttcatcg aaccgtgcga ctcagggccg cgattgaagt
     1321 tgtgacgctt gatggtgccg gcaaaacctc gacctttcga cttgccaatc acgtcaacct
     1381 tttcaccatc agcaaactgg tccaccagga tcttgtcgcc aacgttggtg ctgtcgtctg
     1441 aagctgaaag gcgaaactcc ttcagaatcc gggtcggagg aattcctccg ccagtctttt
     1501 cgaagtggcc tcgcatcggc ttggtgacgt tcttcagctt caaaggattc tcgtctacta
     1561 aaccaagttg cacggcgtcg tacccatccg gaccagccgc agacttcttc tgcacaacaa
     1621 cacaagggcc agccttgatt acagtcacgg gagttaccgt accgtctggt gcgaagatct
     1681 gcgtcatgcc gatctttctt ccgatgattc cgttaatcat tttcgatttc cgattgccaa
     1741 ttgccgattg ttaagtaatt tgccgcatat cacccgacgc caatcggcaa ttggcaatcg
     1801 gaaatcggca agctctctac tgtctaccga aggctttgat ttcaacgtcc acgcccgccg
     1861 gcagatcaag cttcatcaat gcatcaaccg tctgcggggt cgggtcaaga atgtccatca
     1921 gccgcttgtg tgtgcgaatc tcaaactgtt cgcgtgattt cttatcgacg tgtggtgaac
     1981 gcaggacggt ccacttgttc tttacggtcg gtaacggaat cggacccgca acacgagcac
     2041 cggtacgttt tgccgtttcg acgatttccg tagttgactg atccaacacg cggtgatcgt
     2101 aagctttcag gcgaattctg attttttcgt tcatacgttc ttggcctttg gtttttgttc
     2161 tttggtctta gtcagcgcct cttgcaaagg cccaagacca aagacctaaa acctgctact
     2221 caataacttc cgaaacggtg ccagcaccaa ccgtgcgacc gccttcacga attgcgaagc
     2281 gcagtccctt ctccatcgcg attggcgcaa ttaattcaat ctccatcgcc acgttgtcgc
     2341 caggcatcac catctccact ccggccggca acgccgccac tcccgtcaca tcggtcgtcc
     2401 ggaagtagaa ctgcgggcga tagcccgtaa agaacggcgt gtggcggcca ccttcttctt
     2461 tcgtcaacac atacgcctca gccttgaact tcgtgtgcgg cgttatcgag cccggcttcg
     2521 caattacctg cccgcgctca atgtccttgc gctccacccc acgcagcaac aaccccacgt
     2581 tgtcgccagc caccccttcg tccagtaact tcttgaacat ttccacgccc gtgcagaccg
     2641 tcgtgcgcgt cggcttgatc cccacgatct ccacgttctc gttcaccttc accttgccgc
     2701 gctccacgcg ccccgtggcc accgtgccgc gcccttgaat cgtgaagata tcttccaccg
     2761 gcatcaaaaa cggcttctca atgtcccgct ccggcgtcgg gatgtagctg tccactgcgt
     2821 ccatcaactc cagcactgtc ttctcccatt ccgggtctcc ttccagtgct ttcaacgccg
     2881 atcctttaat cactggaatg tcgtcgccag gaaactcata cgcactcaac aactcgcgca
     2941 cttccagttc caccaactcc agcaactccg catcgtcaac cgcatcagcc ttgttcatga
     3001 acacgaccat ggccggtaca cctacctgcc gcgccaacag aatgtgctcg cgggtttgtg
     3061 gcatcggacc gtcggttgcc gccaccacca gaatggcccc gtccatctgc gccgcacccg
     3121 tgatcatgtt cttcacataa tcggcgtgcc caggacagtc aacgtgcgcg tagtgccgat
     3181 tctttgtctc atactctacg tgcgccgtcg cgatcgtgat cccgcgcgct ttttcttccg
     3241 gcgctttatc aatctgatcg aaggctacaa actgcacttt cggattgttc ttcgccaaca
     3301 ccttcgtgat cgccgccgtc aacgtcgtct tcccgtggtc cacgtgccca atcgtcccga
     3361 tgttcacgtg cggttttgaa cggtcaaatt tttccttcga catttcttcc tggcctctta
     3421 tataggtttc gaaccgtatt attgcgagct gtttccatgg agcccgcgat gagatttgaa
     3481 ctcatgacct cctccttacc aaggaggcgc tctacccctg agctacgcgg gcgcaaatcc
     3541 caatgtcaga aaaactggag cgggcgacga gattcgaact cgcgaccctc agcttggaag
     3601 gctgatgctc taccaactga gctacacccg cccatttcag tgccgattgt cgatttccaa
     3661 ctgccaatta cgaagactaa tcagcctcaa ctgttcaacc ggcaatcccg ccttgtcggg
     3721 atcggaaatc ggcaattccg cttggtgcag ggggtaggat tcgaacctac gtaaggcgtt
     3781 agcctgccgg gtttacagcc cggtgccatt aaccactcga ccacccctgc tctttatcaa
     3841 atgattgctg gagccggcga agggacttga acccccgacc ctctgattac aaatcagatg
     3901 ctctaccaac tgagctacgc cggcccgcta tggctacaaa tagcgcattc cgacaaaatg
     3961 cggatactaa caatcacgtt tcaaaaacgc aagtcgcgct cagtgttgta gataaaacgc
     4021 attcgcttgg ggctttttac cactaactaa acaaagaaat tgacccggat caaggcttag
     4081 aagtaggatc gttttagccc ttcaagttga tcgtcgtgac gacccactca cagggagtca
     4141 cgagaaaagc ccctaatctc aatcgttctc tctaaaatct aaggagatta gatatgtcta
     4201 gaaacccgct ttacatcgtc ggctgtcttg tggtgctgac gctaaccttc accacagatt
     4261 ccaaatctca gtcactgtcg acgggcaaca atcagatcgt cgctcaacag ccggcatctc
     4321 ctcaggttgt cgttcctgaa ggtcgaggca acgcgagggt tgccggaagg acaaaccttt
     4381 attgtgcggg ttatatcaaa tatcaaaggt ttgtgagttc tccagagatc gtgggagcag
     4441 aatcagaacc tgaacaacgc acatttgccg agggagatac tgtttacctt aactggggcg
     4501 ctcaacaggg aataaaacaa ggccagcgat ttcagatcgt gagaccaaag ggtgacgtga
     4561 agggtgtttt tcgggaaaag aaaggttact tgggaaccta cgtccgtgaa cttggtcagt
     4621 tggaagtatt caaggtaaac gagcacactt cggtagcgca gatcacgttt tcgtgcgaaa
     4681 tggttctact cggtgatttg gttgttcctg tgccctatcg cgaatcaccg ctcgaaaaga
     4741 caactgcatt tgaccgtttc agtgatccca ctggaaaacc agtcggcaga ctaatgatgg
     4801 ctcgagataa ccgggagatg gtcagcatga acgacgttgt ctacatagac ctgggatctg
     4861 aagacaaaat cgctcccggc gattacctca ccattttcag accacttgga gccggaggta
     4921 ttacgactgt cgatgctgag gaaga
//
LOCUS       DATCGC010000023         1449 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_233346, whole genome shotgun sequence.
ACCESSION   DATCGC010000023 DATCGC010000000
VERSION     DATCGC010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1449)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1449)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1449
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_233346"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..349
                     /locus_tag="VIJ87_00280"
     CDS             <1..349
                     /locus_tag="VIJ87_00280"
                     /inference="COORDINATES: protein motif:HMM:NF013661.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="peptidoglycan recognition family protein"
                     /protein_id="HEY5442921.1"
                     /translation="VDDHSIYQTLPTNETGEHADYEGPGNRSSIGIEMCVNRGNNLDI
                     TIDRTAQLTAKLMRQYNIPLDHVVPHMHWRMIRYDDGRDLGYKQCPRILLDSGRLGPK
                     WSAFIAKVSSYSR"
     gene            820..1107
                     /locus_tag="VIJ87_00285"
     CDS             820..1107
                     /locus_tag="VIJ87_00285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442922.1"
                     /translation="MKSRLRPPKVCPVCGEDVPPAAVACPECGADHKSGWQDNADLYD
                     GVDLPEDDFNYEEFVKQEFGSCHKPAIKTVWWITALILIATLIAIYFCVPH"
BASE COUNT          354 a          385 c          355 g          355 t
ORIGIN      
        1 tgtggacgat cattccattt accaaaccct gccgactaac gaaaccggag agcatgctga
       61 ttacgaaggc ccgggaaaca ggtcgtccat cggcatcgaa atgtgtgtta accgcggcaa
      121 caatcttgac attactattg atcgcaccgc gcagctcaca gcaaagctga tgcgtcagta
      181 taatatccct ctcgatcatg ttgtaccgca catgcactgg cgcatgatcc gttacgatga
      241 cggtcgcgat ttagggtaca agcaatgccc cagaatcctg ctcgattccg gtcggcttgg
      301 tccgaagtgg agtgcattca tcgccaaagt ctcatcttat tcacgatgaa gtaggcaatc
      361 attaactacg ctcgtaaacg gcccgtcccg aaatccgctc ggtgttttgc cagtggtacc
      421 ctggcttagc ttctttatct cgttaggtgc cgtgctgttt acaaacctca atcaaccaag
      481 aagaaccaca ggatgagcgc agatggcgcg aacctgctct atcgaacacc tcgccgttta
      541 gtcatcacac tttggctagg ttgacgtttt tagttgctcg cgcacggccg agaaattctg
      601 tgggatagac ggagagaagc taaatcaaaa tttgattcgc ctggtacaat ctccacttat
      661 cgaacgcgat catgatttcg tgaatgccat gtctatcaca agtgataccg tcgaaccatt
      721 gcctctcaac gaagggaagg ccagcacatc ccgccatggc ttatctcctg tcatctgatt
      781 tatgttccat aacgaactga aggtgacgaa tgaacaacga tgaagagtag attaaggccg
      841 ccgaaagtat gcccagtgtg cggcgaagat gttcctccgg ccgcggtggc atgtccggag
      901 tgtggagcag accataagtc cggctggcaa gacaatgccg acctatacga tggggtggat
      961 ttgccggagg atgacttcaa ttacgaagag tttgttaaac aggagtttgg atcatgtcac
     1021 aaacccgcca tcaaaacagt ttggtggatc actgcactca tccttatagc tacgcttatc
     1081 gcgatctatt tctgcgttcc tcactgagtt caacgaggtc cataccgcga ttcaagctta
     1141 caagctccgc gatggtgtac gagtacaacg cctttagagc ccattgttgg atgaaggact
     1201 cactctccgc gctcgttccg agtagagcag cagattacaa gaaaagacct gcttcgtcga
     1261 acgtgtgatc ggcgcccttg gatgccgtac aactcagcct gcgctcaccg cgtccacgct
     1321 ttccagcgtt tgcggatcgg cttcgcgtaa tcctctacgt ccattttttt ccactgctta
     1381 acgccgttgc gcatgaggtc ctccgatttt tcgcgggccg atttgaacag cggccagaga
     1441 aatggcagc
//
LOCUS       DATCGC010000024         1052 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_433159, whole genome shotgun sequence.
ACCESSION   DATCGC010000024 DATCGC010000000
VERSION     DATCGC010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1052
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_433159"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..723)
                     /locus_tag="VIJ87_00290"
     rRNA            complement(<1..723)
                     /locus_tag="VIJ87_00290"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            complement(905..980)
                     /locus_tag="VIJ87_00295"
     tRNA            complement(905..980)
                     /locus_tag="VIJ87_00295"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(945..947),aa:Ala,seq:tgc)
BASE COUNT          198 a          319 c          262 g          273 t
ORIGIN      
        1 ctacttacgc gccctattca gactcgcttt cgctccggct ccggggcagc accccttaac
       61 cttgcaacag agattcacta gccggctcat tatgcaaaag gcacgcggtc aggcattccg
      121 gaccgaagtc cggcatagcc ctcccactgc ttgtaggcat acggtttcag gtacttttca
      181 ctcccctcac aggggtgctt ttcacctttc cctcacggta ctggttcact atcggtcgcc
      241 agagagtatt tagccttgcg agatggtcct cgcaggttcc cacgggattc cacgtgtccc
      301 gcggtactca gggtacccgt cggagtcagc agactgtcgt ctaccgggct gtcaccgtct
      361 atggcgggcc gttccagacc cttcgactaa cctgctggtt tgtgactccg tatgacgggc
      421 cctacaaccc cgccgtgcat gcacgacggt ttgggctgtt ccgcgttcgc tcgccgctac
      481 tagcggaatc actgttgttt tcttctcctg agggtactga gatggttcac ttcccctcgt
      541 tgccctccac cggcctatga attcagccag ggatctcccg gtattaccca ggaggggttt
      601 ccccattcgg aaatccccgg gtcaaagctt gtttgcagct caccgaggct tatcgcagct
      661 taccgcgtcc ttcatcgact tctggcgcca aggcattcac cgtacgccct tagtagcttg
      721 accacaagta tgtcgaatcc aatctccaac gaagttgccc tcgttagtga ctgcattcga
      781 tcccttttct tcgaaacact gcgtgtgttt tgaattcgtg gttctgaaaa gaactaccgt
      841 ttgcaggata ttcagttgtc aaagaccttc gaacttcaca cgtcgaagtt caaacttcca
      901 gtcgtggtgg agaataccgg gctcgaaccg gtgacctcct ggttgcaaac caggcgctct
      961 cccagctgag ctaattcccc gtttctgagg tttgtccgtg ctattgagcg tgcgaggtag
     1021 gtaaggaagg caggtatgtc gaccgacgct tt
//
LOCUS       DATCGC010000025         1375 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_166924, whole genome shotgun sequence.
ACCESSION   DATCGC010000025 DATCGC010000000
VERSION     DATCGC010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1375)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1375)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1375
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_166924"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1375
                     /locus_tag="VIJ87_00300"
     CDS             <1..>1375
                     /locus_tag="VIJ87_00300"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5442923.1"
                     /translation="KRGYRFVGVVQEREELTNVNGSTNGAMHSAEAPMASEVSSHAVI
                     PTNKSRTSVAGLAALAGIVFVSIVFGVIYWFRHRNTGEGFAPRSVAVLPFKTIGTNGE
                     DDLLGLGMADAMILKLSRLDQLTVLPTSSVFRFTNRDRDPGAIGKELGVESVLDGTVQ
                     RDGDWVRVTAQLVRLSDNKTVWTGKFDERYKSIFTLQDSISDQISSSLRPQVAGYQKT
                     KSAHPTESTEAYQAYLTGLFFWNRRTRDNLPKAIDYLKRAVSDDPNFAEARAVLADCY
                     YLSLTDEYGSSDPDQALQQARISVAKALELDDSLAEAHTVNAGIKLMERNFDEAGKEF
                     RRALELNPSYAVAHVRYAYFLFSSFKLDDALAHMRRAQELDPVSSVTNGALAGMLYNA
                     RDFDGSIAYSKRSLDLEPSAFAARLNLGEALLQKRMFNEAHEAFDKVCEESPSYCYWE
                     KAYAYAMA"
BASE COUNT          325 a          320 c          379 g          351 t
ORIGIN      
        1 aagcgtggct accggtttgt cggagttgtt caggagcgcg aggaacttac aaatgttaat
       61 ggttctacta acggcgcaat gcacagcgca gaagctccga tggcttctga agtctcatcg
      121 catgcagtaa tcccaactaa caaaagtaga acttccgttg ctgggttggc ggcgttagcg
      181 ggcattgtgt tcgtatcgat cgtgtttgga gttatctatt ggttccgtca tcgaaacacg
      241 ggcgaaggtt ttgcaccacg ttcagtggcc gtgttgccat tcaaaaccat cggtaccaac
      301 ggcgaagatg atttgctcgg gttgggaatg gccgacgcga tgattcttaa acttagccgg
      361 ctcgatcaac ttacggtgtt gcctaccagt tccgtatttc gttttacaaa tcgcgatcga
      421 gatcccgggg cgattggtaa ggaactcggt gtcgaaagcg ttctggatgg aacagtgcaa
      481 cgtgatggcg actgggtgcg agtgacagct caacttgttc gcctaagcga taacaagact
      541 gtttggacgg gcaagtttga cgaacgttat aaaagtatct ttacgttgca agattcgatc
      601 tcagatcaga tctccagttc cttgcgtccg caggttgcag gttaccagaa aacaaagtcg
      661 gcacatccaa cagaaagcac cgaagcgtac caggcctatc ttacgggact gtttttttgg
      721 aatcggcgta cgcgagacaa cttgccgaag gcgattgact atttgaaacg tgctgttagc
      781 gatgatccaa attttgctga ggcccgcgca gttcttgctg attgttatta cctgagtctt
      841 accgatgagt acggcagttc cgatccagac caggcgttgc agcaagcgag gatatctgtt
      901 gccaaggcac ttgagctcga cgactcattg gcggaggctc atacagttaa cgccgggatc
      961 aagctcatgg agaggaattt tgacgaagct ggaaaggagt ttcgtcgagc cctggaattg
     1021 aatccaagtt acgctgtggc tcacgttagg tatgcgtact ttctgttttc ctcgttcaag
     1081 ttggatgacg ctctggccca catgcgacgc gcacaggaac tcgatccggt ttcttcagtt
     1141 acaaacggcg ccctggccgg gatgctctac aacgcgcgtg attttgatgg ttccattgcc
     1201 tactccaaac gatcgttgga cctggaacca tcagcctttg ccgcacgttt gaacctgggc
     1261 gaagccttat tgcagaagcg aatgttcaat gaagcgcacg aggctttcga caaggtctgt
     1321 gaggagtcgc cgagttactg ttactgggaa aaagcctatg cgtatgcaat ggctg
//
LOCUS       DATCGC010000026         1230 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_233383, whole genome shotgun sequence.
ACCESSION   DATCGC010000026 DATCGC010000000
VERSION     DATCGC010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1230)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1230)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1230
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_233383"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1230
                     /locus_tag="VIJ87_00305"
     CDS             <1..>1230
                     /locus_tag="VIJ87_00305"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase C-terminal domain-containing
                     protein"
                     /protein_id="HEY5442924.1"
                     /translation="TFSEGRLDVKQYWDFNFNPSESLREEDYLEELRFLLDESVRLRL
                     ISDVPLGAFLSGGIDSSTIVGLMARHSAQPVKTFSIGFHEDSYNELKYARMTAQKFGT
                     DHHEFFVTPEICSVVDELAWFMDEPFADQATIPNYVVSKLAREHVKVVLSGDGGDELF
                     AGYTRYIVAQNRASFDLIPKTLRQGLGPLSKNLPHGTKGRNYLFNISLDPVSRYLDSV
                     STFTSLNRESLYTRDFRDLVGAEGYVSSLFRDLSARVTTGEPLDRLLYIDSKTYLPGD
                     ILAKVDRTSMAVSLEARAPLLDHKLIEFVGQMPAKLKLSGLESKHLLKKAVADLVPHE
                     ILNRPKQGFGVPIQDWINRQLRSRIRESLTEPRSQQRGYVEPGYINVLLNEHERGRRD
                     HSDGLWALFMLELWHRQF"
BASE COUNT          294 a          290 c          302 g          344 t
ORIGIN      
        1 acgttttcgg aagggcgtct agacgttaag cagtattggg actttaattt caatccttcc
       61 gaatctcttc gagaagaaga ctacttggag gagttacgat ttctactcga cgagtctgtt
      121 cgattacgcc ttatctccga tgttccgctc ggggcttttc tttcaggtgg catcgactcc
      181 agtacgattg ttggtttaat ggctcgccat tcggcccaac cagtcaaaac gttttcgatc
      241 ggttttcatg aagacagtta caacgaactg aaatatgcgc ggatgacagc gcaaaaattt
      301 ggcaccgatc atcatgagtt ttttgtcaca cctgaaattt gtagtgtcgt cgatgaactt
      361 gcctggttta tggacgagcc gtttgcggat caagccacta tcccaaacta cgtagtgtca
      421 aaactggccc gtgagcacgt taaggttgtt ctgtcgggtg atggaggcga tgaacttttt
      481 gcaggttaca cgaggtatat tgtcgcccag aatcgagcgt cttttgactt gatccccaaa
      541 acattgcggc aaggccttgg tcccttaagt aagaacctac ctcacggcac aaagggtcga
      601 aactacctat tcaatatctc tttggatccc gtttcaaggt acctcgatag cgtgtcgacc
      661 tttaccagtc tcaaccgtga atcactctat acccgggact ttcgggactt ggttggtgct
      721 gagggttatg tctcgtcact ctttagagac ctcagcgcga gggtcaccac tggtgagccg
      781 ctcgatcgtc ttctctacat cgatagtaag acctatcttc ctggtgacat tcttgcgaaa
      841 gtggatcgca cgagtatggc cgtgtcactt gaggcaaggg caccactcct tgatcacaag
      901 ctaattgagt ttgttggcca aatgccagct aagctgaaac tgtcaggact tgagtcgaag
      961 catctgctaa aaaaagcagt tgctgatcta gtgcctcacg agattttgaa ccggcccaag
     1021 cagggttttg gtgtgccaat tcaggattgg attaatcggc aattacgatc gcgaattcgc
     1081 gagtcactaa ctgaacctcg ttcgcaacaa cgtggctatg ttgaacctgg ctatatcaac
     1141 gtacttctca atgagcacga acgaggtcgg cgagatcact ctgatggact gtgggcattg
     1201 ttcatgctcg agttatggca tcgtcagttt
//
LOCUS       DATCGC010000027         1435 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_133487, whole genome shotgun sequence.
ACCESSION   DATCGC010000027 DATCGC010000000
VERSION     DATCGC010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1435)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1435)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1435
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_133487"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1104)
                     /locus_tag="VIJ87_00310"
     CDS             complement(<1..1104)
                     /locus_tag="VIJ87_00310"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: protein motif:HMM:NF001770.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004055 - argininosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HEY5442925.1"
                     /translation="MTANKINKIVLAYSGGLDTSVMLRWLKENYHCEVVCYCADVGQG
                     AELTGLEEKAHATGASKLYVEDLREEFVRDYVWTAVKANAVYEGVYLMGTSLARPVIA
                     KKQIEIAQKEGADAVAHGSTGKGNDQVRFELTYYALQPDIKVIAPWREWEYKGRLDLI
                     NYAKEHDIPVTATAEKPYSMDANLMHISYEGGILEDPWAAPPESIFQLTRSPETAKSE
                     AEYLELSFEKGEPVAVNGKKLDPVTLLETLNKLGGEHGIGRVDLVENRFVGMKSRGVY
                     ETPGVTILQTAHRALESITMDREVMHLRDSMGVKFAENVYYGFWFAPEFKLMRKFIDE
                     TQVNVTGDVRLRLFRGNAIVEGRRSPHSLYDENI"
     gene            complement(1229..>1435)
                     /locus_tag="VIJ87_00315"
     CDS             complement(1229..>1435)
                     /locus_tag="VIJ87_00315"
                     /inference="COORDINATES: protein motif:HMM:NF014864.4"
                     /note="regulates arginine biosynthesis when complexed with
                     arginine by binding at site that overlap the promotors of
                     the arginine biosynthesis genes; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine repressor"
                     /protein_id="HEY5442926.1"
                     /translation="LSLDHAGEALVVARTVPGLASAVAVEIDAAALPEIVGTIAGEDT
                     IFIAVTDSKAQRTTIKKVWELFGH"
BASE COUNT          320 a          400 c          337 g          378 t
ORIGIN      
        1 aatgttttcg tcgtaaagcg aatgtggaga gcgtcgaccc tcaacgattg cgttgccacg
       61 gaacaacctc aaacgcacat cgccggttac attcacctgc gtctcgtcga tgaacttgcg
      121 catcagtttg aactcaggcg caaaccagaa accgtagtag acgttttcgg caaacttcac
      181 tcccattgag tcgcgcaggt gcatgacctc tcggtccatc gtgatcgact cgagcgctcg
      241 atgggcggtc tgcaggatcg tgacgccagg agtttcatac acaccacgcg acttcatgcc
      301 tacaaatcgg ttctcgacaa gatccactcg accaatcccg tgttcgccgc ccagtttgtt
      361 tagtgtttcg agcaatgtaa ccgggtcgag ttttttcccg ttcaccgcaa ccggctcgcc
      421 tttttcaaat gacaattcaa gatattcagc ttccgattta gccgtctcag gcgaacgcgt
      481 cagctgaaaa atgctttctg gtggcgccgc ccaaggatct tcgaggatgc cgccttcata
      541 agaaatgtgc attagattgg cgtccatcga gtaaggcttc tcggcggttg ccgttacagg
      601 aatgtcgtgt tctttcgcgt aattgatcag atcgagccga cctttgtatt cccactcacg
      661 ccagggagcg atgactttga tgtcaggttg tagagcgtaa taagtgagtt caaaacgaac
      721 ctgatcattt cctttacctg tcgagccatg ggcaactgcg tcggctcctt ctttttgagc
      781 gatctcgatc tgtttcttcg cgatcacagg tcgggcgagc gatgtgccca tcaagtagac
      841 gccttcgtaa accgcgttcg ctttgacagc ggtccacaca tagtcacgca caaattcttc
      901 acgcaggtct tcgacgtaga gttttgacgc cccggttgcg tgtgcctttt cttccaatcc
      961 ggtaagttcg gcgccctgtc cgacatccgc gcaatagcaa acgacttcgc agtggtagtt
     1021 ttctttcaac cagcgaagca ttactgaggt gtccagtccg cctgaataag ccaatacgat
     1081 cttgttaatc ttgtttgcag tcataatcct cgttatccgt atttagtgct ttgaactttg
     1141 tactttgttc gcaaatccac cgcgccactt cggtggctat gctagtttgc aaacaaagta
     1201 caaagcacaa agcgccaagc tcctcttttc agtgcccaaa caactcccaa accttcttaa
     1261 tcgtcgtcct ttgtgctttc gagtctgtta cggcgatgaa tatcgtgtct tcgcccgcga
     1321 tagtgccgac aatctcgggt agcgcggccg catcaatctc aaccgcgaca gctgaagcaa
     1381 ggcctggcac agtgcgagct actaccaaag cttcgccggc gtggtctaaa ctcaa
//
LOCUS       DATCGC010000028         1352 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_466510, whole genome shotgun sequence.
ACCESSION   DATCGC010000028 DATCGC010000000
VERSION     DATCGC010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1352)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1352)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1352
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_466510"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(210..914)
                     /locus_tag="VIJ87_00320"
     CDS             complement(210..914)
                     /locus_tag="VIJ87_00320"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY5442927.1"
                     /translation="MLPSRQRSSIPLFNQENETSSQENLKVAIIEDVRSLRDGLRMLI
                     DGTDGFSCVGSFRTMEEALEKIEANPPDVVLADIGLPGMSGIDGVRLMKDRNPSLTVL
                     MLTVYEDNERIFDALCAGACGYLVKKTPPARLLDSIREAINGGSPMSPEIARRVVNLF
                     REIQPPERADYTLTPHELRLLKLMVEGHSYKTAAAELGVSLNTVCFHIKQIYEKMQVH
                     SKSEAVVKALRNRLVG"
     gene            complement(961..>1352)
                     /locus_tag="VIJ87_00325"
     CDS             complement(961..>1352)
                     /locus_tag="VIJ87_00325"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY5442928.1"
                     /translation="DVFSANGAELRFAVPLPSRDLKLGPEMRRELYLIFKEAVNNVVR
                     HSSCTSVEITLLISDGILELSVQDNGSGFDPDNDSEGNGLANMRLRAKKVGGVLKINS
                     TPDGTKVDLSAPISKRRFPFPGFGRDI"
BASE COUNT          338 a          343 c          339 g          332 t
ORIGIN      
        1 tgagaagacg tacgcatgaa cggctggggg agggactctt cagacttcaa ctaatggcgt
       61 tgaatagata acgcttcgac gtggcggccg tcaccacatg ttttggtagg tttgtgttga
      121 gcttgaatga tgaccgaggg cagggaaggt gggtcgagag tgaggttaga tggtgatccg
      181 ctaatgcact actcggattg cgttttcaat caaccgacca ggcggttgcg cagcgctttt
      241 acgacagctt cagatttgga atgaacttgc atcttctcgt agatttgttt gatgtgaaag
      301 caaaccgtat tcaaactcac gcccaattcg gctgcggcag tcttgtagct atgaccttcg
      361 accatcagtt ttagaagtcg cagttcgtgt ggcgtgagcg tgtagtcggc acgttccggt
      421 ggctgaatct cgcgaaacaa attcactact cgtcgagcga tctcaggtga cattggcgag
      481 ccgccgttaa tcgcttctcg aatgctgtcc aacagtctag cgggcggagt tttcttaact
      541 agataaccac aggccccagc acaaagtgcg tcgaagattc gttcgttgtc ttcgtagacc
      601 gtaagcatca acaccgtcaa cgacggattt cggtccttca tcaatctcac accgtcaatc
      661 ccactcattc cgggtaaacc aatatcagcc aaaacaacgt ctgggggatt agcttcgatt
      721 ttttcgagcg cctcttccat cgttctaaaa ctgccgacac aactaaagcc gtccgtgccg
      781 tcgataagca ttcgcaggcc gtcgcgtagc gatcgcacat cttcaataat ggcgacctta
      841 agattttctt gagaagacgt ctcgttctcc tgattaaaga gtggaatgga tgatctctgc
      901 cgagatggca gcatagcaag gcaattcagc catggcacca cagagatatg tagtcactca
      961 ctaaatgtcg cgaccaaaac cgggaaacgg aaaacgtcgt ttactaatag gtgccgacag
     1021 atccaccttc gtgccgtctg gagtagagtt gatcttcaga acacctccca ccttcttggc
     1081 acgcaaacgc atgtttgcaa gtccattccc ttcgctgtcg ttgtccggat caaaaccgct
     1141 tccattgtcc tgcactgaca actcaagaat gccatcactg atcagcaaag ttatctcaac
     1201 cgaagtgcag gacgagtggc gaactacgtt attcaccgct tctttgaaaa tgagatagag
     1261 ctcgcgtcgc atctcggggc cgagtttgag gtcgcgactt ggaagaggaa cggcaaagcg
     1321 aagctcagca ccatttgcgc taaagacgtc gc
//
LOCUS       DATCGC010000029         1163 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_33717, whole genome shotgun sequence.
ACCESSION   DATCGC010000029 DATCGC010000000
VERSION     DATCGC010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1163)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1163)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1163
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33717"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..442)
                     /locus_tag="VIJ87_00330"
     CDS             complement(<1..442)
                     /locus_tag="VIJ87_00330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442929.1"
                     /translation="MSFKYSGLLALFATSLGLMVCVGPLIRTEVCATNQAQNAPPKEV
                     AGIPVNYDEALVGTYTLPDPLVLANGKPVRDAKTWFQKRRPEIVSLFEENQYGRSPGR
                     PADMSFDVFDKGTPALEGKAIRRQVTVYFSKDKSGPKMDLLIYLP"
     gene            complement(596..991)
                     /locus_tag="VIJ87_00335"
     CDS             complement(596..991)
                     /locus_tag="VIJ87_00335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442930.1"
                     /translation="MKPNVMLTIASLLSVLFLTFHLAGDIVYGFEPGGLSNLVGAVLI
                     SVVWLYGTLMLSERRSGYIIMLLGSLLAMFVPYVHMRGKGVGGASRLAGTSGHFFFVW
                     TLIAIGVLGLFSAILSARGLWSLPWRRPR"
BASE COUNT          265 a          320 c          315 g          263 t
ORIGIN      
        1 caggcaaata gatcagcaga tccatcttcg ggccgctttt gtcctttgag aaatagactg
       61 tcacctgtcg tcgtatcgcc ttaccttcta acgcgggcgt gcccttgtcg aatacgtcga
      121 agctcatgtc tgctggccga ccagggctgc gcccgtactg gttttcctca aacaagctca
      181 cgatctcagg ccgtcgtttt tgaaaccacg tctttgcatc acgcacgggt ttgccgttag
      241 cgagtacgag cggatcaggc aacgtgtaag tgccaaccag cgcttcatcg tagttgacgg
      301 gaatgccggc aacctctttc ggcggcgcgt tctgagcttg gtttgtggca cagacttcag
      361 tccgtatgag tggcccaaca cagaccatca ggccaagcga agtcgcaaac aacgcaagca
      421 gtccagaata tttgaatgac atcggtccct ccattcccca tttaacgctg aaagcgttga
      481 gtaattccag ccccggttaa cgcttaaagc gttgctcgta tcctttctct tatgctttcg
      541 cataattaat gatttgtccg ctgccggtga tgtttgggcc gtgttcgacg gtggactacc
      601 gcggccgacg ccatggcagg ctccacagtc cgcgcgccga gaggatggcg gagaagagtc
      661 cgagcacacc gatcgcgatc agcgtccaga cgaaaaagaa gtgtccgctc gtaccggcga
      721 gcctgctggc gccgccgaca cccttccccc tcatgtggac gtacgggacg aacatcgcaa
      781 ggagtgatcc aagaagcatg atgatgtacc ccgagcgccg ttcggagagc atcagcgttc
      841 cgtagagcca gacgacggag ataagcacag ctcccaccaa gtttgaaagg cctcccggtt
      901 caaacccgta cacgatgtcg cccgccaggt gaaacgtcaa aaagaggacc gagagaaggg
      961 atgcgatggt cagcatgacg ttaggtttca tttgctacct ttcttttgga tgatgtgtat
     1021 ctcacctacg ggtggaagac gtgagatgtt cccgcgtgga gtggcaacga actcgtcgat
     1081 cgactgaaga caagtcaata gagagaacaa gtaggtagtg ccctagtttg aatttctctg
     1141 tgctacctct gtgccctctg tgt
//
LOCUS       DATCGC010000030         1521 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_300028, whole genome shotgun sequence.
ACCESSION   DATCGC010000030 DATCGC010000000
VERSION     DATCGC010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1521)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1521)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1521
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300028"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..961
                     /locus_tag="VIJ87_00340"
     CDS             <1..961
                     /locus_tag="VIJ87_00340"
                     /inference="COORDINATES: protein motif:HMM:NF012271.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HEY5442931.1"
                     /translation="FASPTAAGFSALCAATRSCVPQSGTTSRLDGIGDRLMFRLAYRN
                     FGDHEAVVGNYSVSSGSVAGVRWFELRNVTAGPVSVFQESTYQPDTTWRWMGSAAMDK
                     DGNLALGYSASSASIFPQLRYAGRLATDPVNTLGQGEGTLFSGTGSQTGTSSRWGDYS
                     ALTVDPIDDCTFWYTNEYYITTTSFSWHTRIGSFRFPTCGSVPTPTPTPTPTPTPTPT
                     PTPTPTPVPNAPSNLSANAVSSSQINLSWTDNSSNETGFKIESCEGNNCSNFVQIAQV
                     GINVTTFSNTGLSRNTRYRYRVRAFNAAGNSAYSNIAMDRTLR"
     gene            complement(1008..>1521)
                     /locus_tag="VIJ87_00345"
     CDS             complement(1008..>1521)
                     /locus_tag="VIJ87_00345"
                     /inference="COORDINATES: protein motif:HMM:NF014626.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA];
                     GO_process: GO:0018142 - protein-DNA covalent
                     cross-linking [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SOS response-associated peptidase"
                     /protein_id="HEY5442932.1"
                     /translation="LIPSWSKEPKAIINARAETLEDRASFSESFQRRRCLILADGFYE
                     WRRAGKAKQPFFFQLKDGRAFAFAGIWDRWRNGETSIKSCAIITTDANELLMPVHDRM
                     PVILREESYELWLNEKVSTSELKKLLEPFPSEDMKSHPVSSQVNYSDIDNEDLVKRVD
                     AEVGTTPSLF"
BASE COUNT          370 a          420 c          372 g          359 t
ORIGIN      
        1 attcgcgagt ccaactgcgg cgggattctc agctctctgt gcggcaactc gtagctgcgt
       61 tccccaatca ggaaccactt ccaggttaga cggaatcggc gaccgcctga tgtttaggtt
      121 ggcctataga aatttcggcg atcacgaagc agtggtggga aactactctg taagttcggg
      181 tagtgttgcc ggagttcgtt ggtttgaact ccggaatgtc acggcaggcc cggttagcgt
      241 attccaggag agcacttacc aacccgacac gacctggcgt tggatgggca gtgcggcaat
      301 ggacaaagac ggaaatctcg cgcttggcta cagtgcttca agcgcctcca tctttccgca
      361 actgcgctac gccggaaggc tcgctactga tcctgtaaat actctcggtc agggtgaagg
      421 aacgctattc tcgggaactg gaagccagac cggcacaagc agtcgctggg gagactacag
      481 tgcgttaacg gtcgacccga ttgatgactg caccttctgg tacacaaacg agtactacat
      541 aaccacgaca agtttcagtt ggcatactcg aatcggttcc ttccgattcc cgacgtgcgg
      601 ttcggttcca actccgacac ccactccgac tccaacgcca acacccactc cgacaccaac
      661 acctacgccg acaccggtgc caaacgctcc atccaacctg agcgctaacg cagtctcaag
      721 tagtcagatt aatttaagct ggactgacaa ctcttcaaac gagactgggt tcaagatcga
      781 gagttgcgag ggcaataatt gttcaaactt cgttcagatt gcccaggtgg gaataaacgt
      841 aaccactttc tcgaacactg gattgtcacg gaatacgagg taccgttatc gagtacgcgc
      901 cttcaatgcg gcgggcaatt cagcatactc gaacattgca atggatagaa cgctgaggtg
      961 agatcaatca gcaagccggg gcgaccaaca aggtggcccc ggctttttca aaacagactc
     1021 ggtgtagttc ctacttccgc atcaactcgc ttcacgagat cctcgttatc gatgtcacta
     1081 tagttaacct ggctgctaac cggatgactt ttcatatctt cgctgggaaa aggctctaac
     1141 aacttcttta actctgacgt tgataccttc tcattaagcc acagttcata cgattcctcg
     1201 cgtagaatga ccggcatgcg atcgtgaacg ggcatcagta gttcatttgc atcagtcgta
     1261 atgatcgcgc acgacttgat cgatgtctca ccattgcgcc aacgatccca gattccggca
     1321 aaagcgaatg ctctcccgtc cttcagctgg aaaaagaagg gctgctttgc cttccctgcc
     1381 ctccgccatt cgtaaaaacc gtctgccagg attagacaac gacgtcgttg gaacgattcg
     1441 ctaaagctag ctctatcttc gagtgtttcc gcgcgtgcat tgatgatggc tttaggctct
     1501 ttgctccagc ttgggatcaa t
//
LOCUS       DATCGC010000031         1597 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_33727, whole genome shotgun sequence.
ACCESSION   DATCGC010000031 DATCGC010000000
VERSION     DATCGC010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1597)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1597
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33727"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..581
                     /locus_tag="VIJ87_00350"
     CDS             <1..581
                     /locus_tag="VIJ87_00350"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY5442933.1"
                     /translation="RASQLILTLKAVLDCPIVSVTWDSGSEVLNALHSGASDCLIRNH
                     LTPAKLEESICAVLDTARNLDQLGQYERWYLGLVENSSDLIFTQDLTGIFSSINRVIE
                     TLTGYQQDEVIGQHIRQIVAPEYADVVWSSHLGMLEDRRPIRRELSILSKSRQRIPVQ
                     MSSHLVYKHGAPVGVQGVMRARLQVVSLRAAV"
     gene            complement(608..>1597)
                     /locus_tag="VIJ87_00355"
     CDS             complement(608..>1597)
                     /locus_tag="VIJ87_00355"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEY5442934.1"
                     /translation="FLNASASEIAFGSNMTTLTFHLSRALSLHYSTGDEIVVTELDHH
                     ANIDPWRRLEKERGVTIRTVRLDTETGQLNLDDLERSVNSKTKVVAIGAASNSLGTIN
                     DIANAIELAHSVGALAFVDAVHYAPHALIDVKELDCDFLGMSAYKFYGPHIGILYGKR
                     DLYQETDFPRLVPAPEYAPENSETGTQNQEGMVGAAAAVDFLASFSSLSPRREQLANV
                     FSETHSRNAHLFERLWNGLSDMPRITLYGPTPDQPRTPTVSFTIEGCPSNEAARQLAT
                     KGLFLSHGDFYAATVVERLGLVEEGLLRAGCSCYTNEEEIERLLEGVKELAHG"
BASE COUNT          371 a          394 c          427 g          405 t
ORIGIN      
        1 agcgagcttc gcaactcatt ctaactctaa aagcagtgct ggattgtcca atagtctcag
       61 tgacatggga ctcaggaagc gaggttttga atgcactgca ttccggagct tccgattgtt
      121 tgattcgaaa ccatctgact ccggcaaaac ttgaagagtc gatctgtgca gttctcgaca
      181 cggcccgcaa cctggatcag ttgggccagt acgaacgttg gtatcttggc ctggtcgaga
      241 acagttccga tttgatcttc actcaagacc tgaccgggat ctttagttca atcaatcggg
      301 tcattgaaac cctgacgggt tatcagcagg acgaggttat cggtcagcac atccggcaga
      361 ttgttgcgcc tgaatatgct gacgtcgtgt ggagtagtca ccttggtatg ttggaagacc
      421 gaagaccgat caggcgtgaa ttgtcgattc tatcgaaaag tcggcagcga ataccggtgc
      481 agatgtccag tcatttggtt tacaagcatg gcgcacccgt cggagttcag ggagtaatgc
      541 gagcacgcct gcaagttgtt tcacttagag cggcggtgtg attatcgtaa acagtcgggt
      601 cccgacttca gccgtgagcc agttctttaa cgccctcaag caaacgttcg atttcttcct
      661 cgttggtgta gcacgagcaa cccgctctca ataagccttc ctcaacgagc ccgagtcgct
      721 caacaaccgt ggcagcgtag aagtcgccat gggagagaaa cagtcctttc gttgccagtt
      781 gtcgagccgc ttcatttgat gggcaaccct cgatggtaaa tgagactgtt ggggtcctgg
      841 gttgatcagg agttggaccg tatagcgtga tgcgtggcat gtcactcaag ccattccaca
      901 gtcgctcgaa gaggtgcgca tttcgtgagt gtgtctcact aaacacgtta gccagttgct
      961 cacgtcgcgg cgagagagaa ctaaacgagg caaggaagtc cactgcggca gcagcgccga
     1021 ccattccttc ctgattttgg gttccggtct cagagttctc gggggcgtat tccggcgcag
     1081 gtactagtcg tgggaagtcg gtttcctggt acaagtcacg ctttccatac aggattccga
     1141 tgtgcggtcc gtaaaactta taagcagaca ttcccagaaa atcgcaatca agttccttga
     1201 cgtcgataag tgcatgcggt gcgtaatgaa ctgcatctac gaaagccagg gctccgacgc
     1261 tgtgtgccag ttcgatggca tttgcgatgt cgttgatggt acccaacgag tttgacgcag
     1321 cgccaatcgc cacaaccttc gtctttgaat ttactgagcg ttcgagatcg tcaagattga
     1381 gttgtccggt ctcagtgtct agcctaactg ttcgtattgt tacgccacgt tccttttcca
     1441 gtcgacgcca cggatcaatg ttcgcgtgat gatcgagttc agttacgact atctcatcgc
     1501 ctgttgagta atgaagactc agagctctcg agaggtgaaa ggtcaacgtc gtcatgtttg
     1561 acccaaaggc gatttcactt gccgaagcat tcaaaaa
//
LOCUS       DATCGC010000032         1181 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_493, whole genome shotgun sequence.
ACCESSION   DATCGC010000032 DATCGC010000000
VERSION     DATCGC010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1181)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1181)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1181
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_493"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..680)
                     /locus_tag="VIJ87_00360"
     CDS             complement(<1..680)
                     /locus_tag="VIJ87_00360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442935.1"
                     /translation="MIEAPFSEQNIRLYLLGELSEQEQVEIEDRAFEDQRVLEQILAV
                     EQDLIDDYVSGDIPEENLHRFQNHFLASAERKKKVTFAKTLAAVANATVLTEGPAPAI
                     EVDAPSWHAKLTAFFTRPVIAYSFAAASLVLFIVGSWLVVDRIRLGSEIAQFRTIQES
                     QTAQNRQLEKDLVDERLRNQELMANRGTPPQQTPTPEIQPESPPEPTTPTSPVVVALS
                     LIPGISRG"
     gene            complement(862..>1181)
                     /locus_tag="VIJ87_00365"
     CDS             complement(862..>1181)
                     /locus_tag="VIJ87_00365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442936.1"
                     /translation="LVLEIIKSLSRQREALGEYQQSYSDVAEVPESESRIECLQKCLQ
                     QLSSDNREFIIQYYQGDKREKIENRRKLGERLGVAINTLRMRAQRLRERLQGCVEECV
                     NAG"
BASE COUNT          292 a          284 c          279 g          326 t
ORIGIN      
        1 ctcccacgag aaatacctgg aatcagtgat aaagcaacta cgactggtga cgttggtgtc
       61 gtcggttctg gtgggctttc gggttgaatt tcaggagttg gagtttgttg gggcggcgtg
      121 ccgcgattcg ccatgagctc ttgattccga agacgttcgt caacaaggtc tttctcaagc
      181 tgacgattct gggccgtctg ggattcttga atggtgcgaa actgggcgat ttcagaacca
      241 agccgaattc tatcgacaac tagccatgag ccaacaataa acagtaccaa tgaggcagcc
      301 gcaaatgagt aagcaatcac cggacgagta aagaacgctg ttaacttagc gtgccatgat
      361 ggagcgtcca cctcaatagc cggcgccggg ccttcagtta aaactgtggc atttgcaacc
      421 gctgccagcg tttttgcgaa ggttactttc tttttccgct ctgctgaggc cagaaagtga
      481 ttttgaaatc tgtgtaggtt ttcttcagga atatctccgc tgacgtaatc gtcgattaaa
      541 tcctgttcga cagccagaat ttgttcaaga actcgctgat cctcgaacgc tcggtcttct
      601 atttcgacct gttcttgttc agaaagttcg ccaagcaaat acaggcgtat gttttgttca
      661 ctaaagggag cttcaatcac gacttaacgg tctccttaat atatgagctg gaaatatcta
      721 tctcccagtc actcagtttt tgttcagaaa gttcgccgag aaaatgccga acttggttag
      781 aactaccgga ggtgaaattg cttcactcat atattagtgg tcggaaacga gtttttatca
      841 catcccgaga catctattta cctagccagc gttaacgcat tcctcaacgc aaccctgcaa
      901 acgttcccgt agccgctggg cccgcattcg caaggtgtta atcgcaacac ctaaacgctc
      961 acctaatttc ctccggtttt caattttctc gcgcttgtcg ccctgataat actgaatgat
     1021 gaactcgcgg ttatcggagg aaagttgctg aagacatttt tgtaaacact cgattcgaga
     1081 ctcggattcg ggtacttcgg ccacgtcgct ataggactgc tggtattcgc cgagtgcctc
     1141 acgttgtctt gagagagact tgataatctc caatacgagc a
//
LOCUS       DATCGC010000033         1500 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_67073, whole genome shotgun sequence.
ACCESSION   DATCGC010000033 DATCGC010000000
VERSION     DATCGC010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1500
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67073"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1058)
                     /locus_tag="VIJ87_00370"
     CDS             complement(<1..1058)
                     /locus_tag="VIJ87_00370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442937.1"
                     /translation="MKDVVSSSRKRRSIRIAQALPFALCALVLVLSSACVLTTETIYT
                     RPVYYSYTCKTVLMDTSSGELRSVNTSRLLTDAPGAAAHSFLSFDFNGDHTRNVADAE
                     LDFRRYLRNNVATSSTFMGRSWCVRPSFTVCADPVNVVWRSDTPPAALPDPELPNCFE
                     SAGPQLEVTAPGLSSDGQLVFPDAAVGSSSTPLVIFTVTNRSSVPLRVNAINFIAGGD
                     TPDFVKSSDSCAPTSAEMITGRGHLLGSGATCTFQMQFLPQHRDGVAECMPSSPNDSC
                     QRRASLSVTGEVDSTRNIVNPVNVRVSGRALGGTISIGPAEICFPTAPALGACTPYQP
                     VRITNTTVGDLTLNSPRLT"
     gene            complement(1140..>1500)
                     /locus_tag="VIJ87_00375"
     CDS             complement(1140..>1500)
                     /locus_tag="VIJ87_00375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442938.1"
                     /translation="TDRLGVSTKADCNFRVVDRTPPVVTPPSSTTIDSTGDGGTTPAA
                     SDALRDFLGHASASDEADSAPKALPPLMNGKEITNSTFFPITTQDQWLTITFRFADKF
                     GNVGSADSYLRVVKPKK"
BASE COUNT          362 a          371 c          431 g          336 t
ORIGIN      
        1 gtcaaacgcg gagaatttag cgtcagatcg cccacagttg tattggtgat acgcactggt
       61 tggtacggtg tgcatgcgcc gagtgccggg gcggttggaa agcagatctc ggcgggtccg
      121 atactgatag tgcctcctaa cgctcgacca gagactcgca cattcaccgg gttgactata
      181 tttctcgttg aatcaacctc accggtgacg gacaacgatg cccgccgctg gcacgaatca
      241 ttcggcgaac tcggcatgca ttcagcaaca ccatcgcgat gctgcggcag aaactgcatt
      301 tgaaaagtgc atgttgcacc acttccgagt aagtgacctc ggcccgtgat catctcagca
      361 cttgtgggtg cgcacgagtc ggaagatttc acgaagtccg gtgtgtcacc acccgcaatg
      421 aagttgattg cgttgacacg taatggcact gaactgcgat tggtaacggt aaagatgacc
      481 aaaggcgtac tactcgatcc aaccgctgcg tcaggaaaca cgagttgacc gtccgagctg
      541 agtccaggag ctgttacctc aagctgtggt cccgcactct cgaaacagtt cggaagttcc
      601 gggtcgggaa gggcagcagg cggtgtatcg cttctccaaa caacgttaac tggatccgcg
      661 caaacggtga aagacggacg gacgcaccat gatcgtccca tgaaggtaga actggtggcg
      721 acgttattgc gcaggtaacg acgaaagtcg agttctgcat cagctacatt acgagtatgg
      781 tcgccgttga aatcgaaact caggaaagag tgcgccgctg cacctggggc atcggttaaa
      841 agccttgaag tgttaacgga gcgaagctct cctgaactcg tgtccatcag gacggtttta
      901 caagtgtagc tgtagtaaac aggcctcgtg taaatggttt cggtggtgag gacgcacgcc
      961 gaggaaagaa cgagtaccaa cgcgcaaagc gcaaatggta atgcttgggc tattcgaatc
     1021 gagcggcgtt ttcgcgatga tgagacgacg tctttcattg tcactcctaa aagggcacag
     1081 actttccgtc tgtggggatt agatttgagg ctgcgtgaat ttcgagcaaa gcagactgac
     1141 tatttcttcg gcttcacaac acgcaggtag gaatcagcgc tgccgacgtt tccaaactta
     1201 tctgcgaagc gaaacgtgat cgtcagccac tggtcttgag ttgttatcgg aaagaaggtt
     1261 gagtttgtga tctctttacc attcatgagt ggtggcaaag ccttgggcgc tgaatcagcc
     1321 tcgtcgctcg cactcgcatg acccaaaaag tctctgagtg cgtcggaggc tgcgggagtt
     1381 gttcccccat cgcccgttga atcgatagtt gtagaagatg gaggtgtcac aaccggtgga
     1441 gtgcgatcga ccacgcggaa gttgcagtca gcctttgtcg atacaccgag ccgatcggtc
//
LOCUS       DATCGC010000034         1111 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_233515, whole genome shotgun sequence.
ACCESSION   DATCGC010000034 DATCGC010000000
VERSION     DATCGC010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1111)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1111)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1111
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_233515"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..511)
                     /locus_tag="VIJ87_00380"
     CDS             complement(<1..511)
                     /locus_tag="VIJ87_00380"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014414.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY5442939.1"
                     /translation="MTNHYTNAGINDLVEFYRTKFVSDEVLDQRYFKALDRFDMRFAR
                     TMWVYDNVRTGSSVLDLGCGAGMLALLKRKDVTLIGVDLSNECALAAKRNGYDNAFNS
                     SLKQLPFPDATFDYVVSLDVLGHVSFDEKDAVLAEIKRVLRPGGVTMHGIECTDKSGR
                     QRLEEKSPEE"
     gene            complement(600..>1111)
                     /locus_tag="VIJ87_00385"
     CDS             complement(600..>1111)
                     /locus_tag="VIJ87_00385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442940.1"
                     /translation="QVNFNAATHHTLIEVIETLTSSEQRLANLQSQFNAEAKTTREQL
                     ELLQRKLDAQGDDLKTQRAELLAEIRTRKDQIEREQATLNQRHSAVLAQVEVLQRTVN
                     EFESRLSQLDHPQRLEDLVNEFRERDERLLDEQRVCFKQLSLELTESQVLQDSRRRAL
                     EARIAKLEE"
BASE COUNT          253 a          282 c          267 g          309 t
ORIGIN      
        1 gctcttccgg actcttctct tccaatcgtt gccgaccact cttatcggtg cattcgattc
       61 cgtgcattgt gacgccgccg ggacgtaaca cgcgtttgat ctcagccagc accgcgtctt
      121 tctcgtcgaa tgaaacgtga cccaatacat caagactgac aacgtaatca aaagtggcat
      181 cgggaaaagg gagttgtttc agacttgaat tgaaggcgtt gtcataccca tttcgctttg
      241 cagcgagcgc gcactcgttt gataagtcga cgccaatcag agtgacatcc tttcgcttca
      301 acaaagcgag cattccagca ccacagccga ggtcgagcac tgaagagccc gttcgcacat
      361 tgtcataaac ccacatggtg cgagcaaagc gcatgtcgaa acgatcgagc gccttgaagt
      421 agcgttgatc cagaacttcg tcagatacaa acttcgtccg atagaactcg acgaggtcgt
      481 tgattccggc gtttgtgtag tgattcgtca taatgatctc agctctcaga cctcaagtct
      541 cagagttgtt acgacgcgca ccctttactt tcagatcaga gatttgagat ctgagatcat
      601 tattcttcaa gtttcgcaat ccgtgcttcc agtgctcgcc gtctactgtc ctgcaaaact
      661 tgcgactcgg ttagctcaag agacaattgt ttgaagcaaa ctcgttgttc atcgagcagg
      721 cgttcgtctc gttcgcgaaa ctcattaaca aggtcttcga ggcgctgggg atgatctaac
      781 tgactaagtc gcgactcgaa ctcatttact gtcctttgta gaacctcaac ctgggccagt
      841 acggcgctgt gacgttgatt gagtgttgct tgctctcgct cgatctgatc ttttcgggtc
      901 ctaatctcag cgagcaactc ggcccgctga gttttcaaat catcgccttg tgcatctagt
      961 ttgcgctgaa gcaattctaa ttgttcacgc gtggtttttg cttcagcatt gaactgactt
     1021 tgtagattcg ccagccgttg ttcggaggat gtaagagttt caatgacctc gataagagtg
     1081 tggtgtgtcg cggcgttgaa gttgacttgc t
//
LOCUS       DATCGC010000035         1687 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_167224, whole genome shotgun sequence.
ACCESSION   DATCGC010000035 DATCGC010000000
VERSION     DATCGC010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1687)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1687)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1687
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_167224"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            130..1605
                     /locus_tag="VIJ87_00390"
     CDS             130..1605
                     /locus_tag="VIJ87_00390"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY5442941.1"
                     /translation="MKRRDFLKQSAAVAAITLPGLMPTRLLTETLQRRGVTKKVVIIG
                     AGLAGLSAGYELTQAGHDVTILEARNRPGGRVLTLREPFADGLYAEAGAMNVFDNHSW
                     TLKYIRLFGLILDRSTSPNLASIAFIRGKRITIKAGQAVVYPLHLSASETNVARRELW
                     DRYVGPVLKDLGDYTAAGWPTSQLMKYDDMTFYEFLRKQGASADAATLLGLGAYGGLG
                     DGVRSVSALVLLREAAHRSGMTSNSYIRGGTDSLPKAFAAKLSDKIRYAAPVVSIEHG
                     APQVRVSFVQAGMRTSISADRVVCAIPFSVLRSIAVSPGFSVEKQRAIKELPYTSVTR
                     TYLQTKRKFWLEEGFTGSATTDLGNTMVFDGAPNQGSDQSRGILESYMVGAIARQTTS
                     MPEPKRIAWVKEIVGKAYPSIHSNFEVGTTKCWDADEWARGGYAWYKPGQMKSLLPYV
                     ARPEGRLHFAGEHASSLFGWMQGALESGNRVAQEINDAEST"
BASE COUNT          403 a          431 c          467 g          386 t
ORIGIN      
        1 ggcaaagttc acgagcaaga gcatttcccg ttcctgccag gctgcttgcg acctatcgtt
       61 cctacccaat tgggtattgg cagcaaggct cagccccatt agaatccgcg cctcgaaagg
      121 aaccccgtca tgaaacgtag agatttccta aaacaaagcg cagccgtggc agccataact
      181 ttgccagggt tgatgccaac gaggcttcta acagaaacac ttcaacggcg cggagtgacc
      241 aaaaaggtgg tcattatcgg cgctggatta gccgggctgt cggcaggtta cgaactaact
      301 caagcggggc acgacgtgac gatccttgaa gcgcgtaacc ggccaggcgg acgagtgttg
      361 accttacgcg aaccttttgc ggatggtctt tacgcagaag ctggggccat gaatgtcttc
      421 gacaaccact cgtggacttt aaagtacata agattgttcg gcctcatcct cgatcgctct
      481 acctcgccca acctggcttc gattgcattt attcggggaa agagaattac gatcaaagcg
      541 ggtcaggccg tcgtgtatcc acttcatctg tcagcttccg aaacaaatgt tgcgcgtcgt
      601 gagctatggg accgctacgt tggtcctgtg ctgaaagatc tcggggacta taccgccgcc
      661 ggatggccta cctcgcaact gatgaagtac gacgatatga ccttctacga gttcttgcgc
      721 aaacaagggg cgtcggccga cgcagcaaca ctcttgggtc tcggcgcata tggtggtttg
      781 ggagatggag ttcggagtgt ctctgccctg gttcttcttc gcgaggctgc tcatcgttct
      841 ggaatgacta gcaactcgta tattcgaggc ggcacggatt cattacccaa ggcgttcgcc
      901 gcaaaacttt cggataaaat tcgatacgcc gcacctgttg tcagtattga acatggtgcg
      961 ccccaggtcc gcgtcagttt tgttcaagct ggaatgcgca caagcatctc cgcagatcga
     1021 gtggtctgcg ccattccgtt ttcagtgtta cgaagtatcg cagtgtctcc cggattctct
     1081 gtcgaaaagc aacgagcaat taaggaactg ccgtacacgt cggtcactcg gacgtatctt
     1141 caaaccaagc gaaagttttg gctcgaagag ggatttacgg gatcggcaac tacggatctt
     1201 ggaaatacga tggtgtttga tggagcacca aaccagggat cagatcagtc gcggggtatt
     1261 ttggagtcgt acatggtcgg agcgatcgct cgtcagacca cctccatgcc tgagcccaag
     1321 cggatagcct gggtgaagga gatagtcggg aaagcttacc caagcattca ttcaaacttt
     1381 gaagtaggca caacgaaatg ctgggatgct gatgaatggg cccgtggagg ttacgcctgg
     1441 tacaagccgg ggcaaatgaa gtcgttgtta ccctacgtcg cacggcctga gggaagacta
     1501 cattttgccg gcgaacatgc ttcatcgctg tttggatgga tgcagggtgc actcgaatca
     1561 ggcaatcgag tcgcacagga aatcaacgat gccgagtcga cctagtgctt aagtcttttc
     1621 agtttcatcg cctcgtgcaa atcggaggga caaacaccca gtggcccagg cgaatcgatg
     1681 agccatt
//
LOCUS       DATCGC010000036         1002 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_133644, whole genome shotgun sequence.
ACCESSION   DATCGC010000036 DATCGC010000000
VERSION     DATCGC010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1002)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1002)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1002
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_133644"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            97..>1002
                     /locus_tag="VIJ87_00395"
     CDS             97..>1002
                     /locus_tag="VIJ87_00395"
                     /inference="COORDINATES: protein motif:HMM:NF014477.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0017013 - protein flavinylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HEY5442942.1"
                     /translation="MAYTRRNFLNLIARSEPRADECWLHVSRTAMACKFEVTLPRSEE
                     TGVVAATEALDEVDRLEAQLSVFRESSEVSYVNSNAASAPVKLSESLYQLFTLCRDLY
                     QETSGAFDITSGPLTRCWGFLRREGQLPADAEIAAALSVVSTNHLELDNEAQTIRFRK
                     SGVEINLGSIGKGYALDHAAMLLATNLKTALLNAGASSMKAIGEGERGDGWLVGLRHP
                     RSKFKRLGVLRLHDCALSTSGNEEQFFDHAGRRFSHIIDPRSGWPAEGVTSVSVVAPT
                     CALSDALATAFFVGGRQLAETYCATH"
BASE COUNT          237 a          244 c          288 g          233 t
ORIGIN      
        1 tggctctaat gaatattgat attgacttga tcgagccaca ggctaccgcg tagtggtact
       61 gacttcgaga cactgaggta gcacagagaa gaaaacatgg cttatacacg tcgtaatttt
      121 ctaaatctca tcgcccggag cgaaccgcgc gctgatgagt gctggttgca cgtgagccgc
      181 acggcgatgg cttgtaagtt cgaagtgact ttacctcgat ccgaagagac tggcgtcgtc
      241 gcagcaaccg aagcacttga cgaggtcgat cgtcttgaag cgcagctctc agtatttcgc
      301 gaaagcagtg aagtcagtta cgtgaattca aatgcggcga gcgctccggt aaaactttct
      361 gaatcgctct accaactctt taccctgtgc cgtgacttgt accaggaaac aagcggtgct
      421 tttgacatta catccgggcc gttgactcgg tgctggggct ttctcagaag ggaaggtcaa
      481 ctgcccgcag atgcagaaat agcggctgcg ctttcggttg tcagcaccaa tcacctggaa
      541 ctggataacg aggcacaaac cattcgcttc aggaagagcg gagttgaaat aaacctggga
      601 agcatcggca aaggctacgc gcttgaccat gctgcgatgc tgttagcaac caaccttaaa
      661 accgccttgc tgaacgctgg agccagcagc atgaaggcaa tcggtgaagg tgagcgtggg
      721 gatgggtggt tggtcggttt gcgacatccc cgttcaaagt tcaaacggct tggagttttg
      781 cgattgcacg actgtgcgct ttcgacgagt ggcaacgagg aacagttttt cgatcacgcg
      841 ggtcgccgtt tcagtcacat cattgaccca agaagtggtt ggccggccga gggtgtaacg
      901 agtgtgagcg tcgtagcacc aacttgtgca ctcagtgatg cgttggctac ggcgttcttt
      961 gtcggtgggc gtcaacttgc tgaaacttat tgcgccacgc ac
//
LOCUS       DATCGC010000037         2437 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_167270, whole genome shotgun sequence.
ACCESSION   DATCGC010000037 DATCGC010000000
VERSION     DATCGC010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2437)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2437)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2437
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_167270"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1129
                     /locus_tag="VIJ87_00400"
     CDS             <1..1129
                     /locus_tag="VIJ87_00400"
                     /inference="COORDINATES: protein motif:HMM:NF024206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEY5442943.1"
                     /translation="DRGANVHVSDKNGDTALILTAGVYEGPIDIVRYLLNKGINVNAQ
                     NKKGATALMIVASKGKQDVLELLITSGADLNLKDAEEATALDYAVENGKTELARFLFK
                     RSAKSKNNYKSEDEMLRSVTNAALLEAAERNKLDSVKSQLAAGADINTRSRSGNTALM
                     LAIEYSYGRLDVTTFLMDNGADLNAVDSDGNTALMIATARNNNEAVVALLAHKAAVHF
                     RNKEGRTALHIASAELHKRDVEALLAIKPAVTASSAGVDVVGVDVNSRDNSGRTPLML
                     AADHDSFVPDEVMELLLAHGAKIDEQDPQGNTSLMIAAKAGGMSGVEYLVSKGAAVNL
                     KNQAGETALKLARKIHENDRVSNAKLVEDRVVATLLRAGAK"
     gene            1534..>2437
                     /locus_tag="VIJ87_00405"
     CDS             1534..>2437
                     /locus_tag="VIJ87_00405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442944.1"
                     /translation="MKRVTILAATVFLLTWSAVAQNRHVPSIDELLTLKTVGAVQISP
                     DAKWIAYTVGYGDFKTDTFVNQIWLVDLTTGRNFQVTRGDKSSSNARWSPDGQWLTFL
                     SNRVDDKNQIFAINPLGGESIQLTKSETAISNFTWTEDGKSIGYLANEPAPPVSKDRK
                     DYMGDFEVVRHEYSFNHIWTFTAMDAFKAPLVGKQRTRKKDFSVESFSFSPDGSEIAF
                     SATTNPDLIQGVTADVYILKLSDDAIRKIVSQAGPDNGPRWSPDGKQIVFASAMGREP
                     SFATNTKLAIVPAEGGTPRSVTDSI"
BASE COUNT          642 a          596 c          663 g          536 t
ORIGIN      
        1 tgaccgcggt gccaatgtgc acgtcagtga caaaaacggc gacactgcat tgatcctgac
       61 ggcgggtgtt tatgaaggcc cgattgatat cgttcgctat cttttaaaca agggaatcaa
      121 tgtcaacgcc cagaacaaga aaggggcgac agcgttgatg attgtcgcaa gcaaaggaaa
      181 gcaagacgtc cttgaactgc tgataacgag tggagccgat ctaaatctga aggacgctga
      241 agaggcgact gccctggact acgcggtcga gaatggtaaa accgaactgg ccaggtttct
      301 tttcaaacga tcagcaaaat ctaagaacaa ctacaagagc gaagatgaaa tgttgcgctc
      361 tgttacgaac gcagcactat tggaggctgc cgaacgcaat aaacttgaca gcgtcaagtc
      421 gcaactcgct gctggagcgg acatcaacac tcgctcgcgt tcagggaaca ctgcgttgat
      481 gttggcaatc gaatacagct acggcaggct ggatgtcacg accttcctga tggacaacgg
      541 agcggatctc aatgccgttg actctgacgg caacacggca ttgatgatcg cgaccgctcg
      601 caataacaac gaggcagttg ttgcgctgtt ggcgcacaag gcggcggttc attttcgaaa
      661 caaggaaggg cgaacggcac ttcacatagc ctcagccgaa ctgcacaaga gagatgttga
      721 agcgctactg gcaatcaagc cagcggtgac ggctagctca gccggggtcg atgtcgtcgg
      781 cgtggacgtt aacagtcgag acaatagcgg gagaacaccg ttaatgcttg cggcggatca
      841 cgacagcttt gttcctgacg aagtcatgga attgttattg gctcacggag cgaagatcga
      901 cgaacaggat ccacagggaa acacgtcgct aatgattgcg gcgaaagctg ggggtatgtc
      961 gggtgttgaa tatctggtaa gcaaaggtgc agcggttaat ctgaagaacc aagccggcga
     1021 aacggcgttg aagttggcgc gaaagattca tgagaacgat cgagtgtcga atgcgaagct
     1081 ggtcgaagat cgagtggtgg cgacgctgtt gagagctggc gcgaaatagt gatcgttttc
     1141 cagatgtcat ttgaggtttt tcagagtcgt ttggctatca tgggattctt ccttatcgct
     1201 tttgcccgtg attatgaact ctggaattgg acctcacctc acgttaccct ttagtaaccc
     1261 ctctagcgca acagtgatcg ctcttctggg accgcaggcg tcctcgcctg caatcgtcgc
     1321 cactcaagtt cgtgacgggc aacggtggca ggcgaggacg cctgcggtcc cagaagagcg
     1381 atcactgttg cgctagaggg gttactgaag ggaaccaacg aacaaagcat tcctagcgtg
     1441 tcgttcgtaa tgtcagataa aatgcgctgc gacatttcaa atccgcaagt ctcagagcaa
     1501 atcatcaatc gtccgatgtt ctggagggaa agcatgaaaa gagtcactat ccttgcagcc
     1561 accgtatttc ttttgacgtg gtcagccgtt gctcaaaacc ggcacgtacc ttcaattgat
     1621 gaactgttga cgctaaaaac ggttggcgcc gttcaaatct cgccggacgc aaaatggatc
     1681 gcttacaccg taggctatgg tgacttcaag acagacacgt ttgtgaatca gatatggtta
     1741 gtcgacctga caactggtcg caattttcaa gtaacgcgag gcgacaagtc atccagtaac
     1801 gcgcgttggt ctcccgatgg ccaatggctc acatttttga gcaatcgcgt tgacgacaag
     1861 aaccaaatct ttgcaattaa tccgctcggt ggtgaatcta ttcaactaac gaagtctgaa
     1921 accgcaatca gtaatttcac ctggacagaa gatggtaaat cgattggcta cctggcaaac
     1981 gaacccgcgc caccagtttc gaaggatcgc aaagactaca tgggtgactt cgaagttgtg
     2041 cgccacgaat actcgttcaa tcacatatgg acatttacgg cgatggacgc gttcaaagcc
     2101 cccctggttg gcaagcagcg caccaggaag aaggacttta gtgtcgagtc gttttcattc
     2161 tcacccgacg gatcggagat cgcgtttagc gcaaccacca atcccgacct gatccaggga
     2221 gtcactgccg atgtctacat cttgaagttg agcgacgacg cgattcgaaa gattgtgtcg
     2281 caggctggac ctgacaacgg cccgcgctgg tcaccagacg gtaaacagat cgtttttgcg
     2341 tcggccatgg gtcgcgaacc ttcatttgca accaatacca aattggccat cgttccagct
     2401 gaaggcggaa cgccacgttc tgttactgac agcatcg
//
LOCUS       DATCGC010000038         1786 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_466667, whole genome shotgun sequence.
ACCESSION   DATCGC010000038 DATCGC010000000
VERSION     DATCGC010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1786)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1786)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1786
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_466667"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            398..742
                     /locus_tag="VIJ87_00410"
     CDS             398..742
                     /locus_tag="VIJ87_00410"
                     /inference="COORDINATES: protein motif:HMM:TIGR03433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEY5442945.1"
                     /translation="MSSKTEIWQGTLALMILKTLDTLGPLHGYGIGRRIEQISGDRLS
                     LNYGTLYPSLLKLEQEGWIVSDWGVSENNRKAKYYKLTRAGRKQLAKEAKEWNQTTAI
                     VARFLEPVEDQS"
     gene            739..>1786
                     /locus_tag="VIJ87_00415"
     CDS             739..>1786
                     /locus_tag="VIJ87_00415"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5442946.1"
                     /translation="MRQLRAWALRFKGMFSKDAGERELADELESHLQLHIDDNIRAGM
                     SPQEAKRVAVMKLGGVEQAKEAYRDRATIPFLESVVQDLRFTLRQLRRNPAFTFTATA
                     MVALGIAASVAIFAFVDAALIKPLPYQNPSRLVFVTETTPEIPRSAISYPDYLDWKKL
                     NRVFDSMDVYSQRGNVVKTATGMEMIDGARVSAGFFHTLGVSPLLGRDFSAGEDLPEA
                     PRTLILSYASWQKRFGSKQEIVGQPITLDETSFVIIGVLPQNFHFAPAENAEFWTTLN
                     PTGGCFTRRSCHFLNGIARLKDSVSKEAALADVVRIAKDLEAQYPDSNRNQGATIAPL
                     SEVIAGDVKPILLLL"
BASE COUNT          465 a          483 c          429 g          409 t
ORIGIN      
        1 cgtagaatag cgagtcggta agtcccatgt caccgaaaaa ccggtaacac actcaagtat
       61 cactgtacag acgcaccaag ccaacgatgc gttaacaagc gctggacttg cgagttacaa
      121 agaatcatta agaatggttc agcatactca ctataagtgc gtacgcctct tgcttggaat
      181 cagtcggcgt caacgcgctc ccagtaaagc tatccacaca atcccctgct ctacctggta
      241 attcgccgcc cttcagcata gagattgctc tagcctactt cacaactcct cctcttgtat
      301 tcccatatga gccgctgtat cctatggcca cgccatagga gaacgctaag tttgatcgtg
      361 tatcgctaat tcaggtcacc caatactcga ggacaatgtg tcaagcaaaa ctgaaatctg
      421 gcaaggaaca cttgccctca tgatcttaaa aacgctcgat actctcgggc cacttcatgg
      481 atacggaatc gggcgtcgta tcgaacagat aagtggcgat cgactctctc tcaattacgg
      541 cacgctctat ccatcgttgc tcaaattgga gcaggagggc tggatcgttt cggattgggg
      601 ggtctctgaa aacaaccgta aggctaagta ttacaaactc acacgcgcag gtcgcaaaca
      661 actggcaaag gaagccaaag agtggaatca gaccacagcg atcgtcgccc ggtttctaga
      721 acctgtggag gatcagtcat gagacaactg cgcgcgtggg ctttgaggtt caaaggcatg
      781 ttttcaaaag acgctggtga acgtgaactc gcagacgaac tcgagagtca tctgcaactg
      841 catatcgacg acaacattcg cgccggcatg tccccccaag aagcgaaaag agtcgcggta
      901 atgaagctag ggggagtcga gcaagcaaag gaggcttacc gcgaccgcgc tacgattccc
      961 ttcctcgaaa gcgttgtgca agatctacgc ttcacactca gacagctccg aagaaatcca
     1021 gcgtttactt ttacagccac ggcgatggtg gcgctcggca tcgccgcaag cgtcgccatc
     1081 tttgctttcg tggatgcagc gctcatcaaa cccctgccct atcagaatcc ttcgcggctt
     1141 gtctttgtaa ccgagacaac cccagagatc cctcgctccg ccatttcata tcctgactat
     1201 ctcgattgga aaaagctcaa cagagttttc gattccatgg acgtctatag tcaacgcgga
     1261 aatgtggtaa agacagccac cggaatggaa atgattgacg gagcccgtgt gagtgcgggt
     1321 tttttccaca cactcggtgt tagtcctttg cttggtcgag atttttctgc aggcgaggat
     1381 ttgccggaag cacctcgcac tttgatccta agctatgcct cctggcagaa gcgctttggc
     1441 agtaaacaag agatcgtcgg ccagccgatc accttggatg agacgtcatt cgtcatcatt
     1501 ggagtacttc cgcaaaactt tcatttcgct cccgccgaga atgctgaatt ctggaccaca
     1561 ctcaatccaa ccggtggttg ctttacgaga cggagttgtc attttttgaa tggcatcgca
     1621 cgtctcaaag acagtgtttc aaaggaagca gccctcgcgg atgtcgtacg catcgctaaa
     1681 gacctcgagg ctcaataccc agactcaaat cggaaccagg gcgcaaccat cgcacctctg
     1741 tcagaagtaa tcgctgggga cgttaagccg attctgttgc tactac
//
LOCUS       DATCGC010000039         1172 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_595, whole genome shotgun sequence.
ACCESSION   DATCGC010000039 DATCGC010000000
VERSION     DATCGC010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1172)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1172
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_595"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            131..>1172
                     /locus_tag="VIJ87_00420"
     CDS             131..>1172
                     /locus_tag="VIJ87_00420"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEY5442947.1"
                     /translation="MPSASIAIVKDGQIVYLKAYGDARLEPRTPATTEMRYSIGSISK
                     QFTATAILLLQEQGKLSLNDKVSKFIPNLTRANEVTVRQLLSHTSGYQDYWPQDYVMP
                     MMLQPVTAEKILDMWARKPLDFDPGTKWQYSNTNYVIAGLIIEKASGMPLLQFLRERV
                     FTPLGMKSVANIDEKALGDTDAVGYLRYGLGPLRQAPKEGPGWLFAAGELAMPAQDLA
                     KWDISIMDRKLMKPESYREMETEMQLKTGIGTRYGLGLSVGMEAGHRAVSHGGEVSGF
                     TAENVVFPDDRVAVVALSNQDAAGAASGIAHGIVPMLFTVDDPTTPAKTEQARKILEG
                     LQKGTIDRSLFTS"
BASE COUNT          303 a          299 c          321 g          249 t
ORIGIN      
        1 ccaaatgcga aaaatccttt ttacctcgat actggtactg gcttgctcga tcttcgcaaa
       61 cgcgcaactg acacaggaaa ccaaggacgc catagataaa ctcgctaacg aaaccctaac
      121 gaaaacaggt gtgccgagtg cctcaattgc gatcgttaaa gacggccaga tcgtctacct
      181 caaagcttat ggcgatgcgc gattggaacc gcgtactccg gcaacaactg aaatgcgtta
      241 cagcatcggc tcgataagta aacagttcac agcgactgcg atcctgttac tccaggagca
      301 aggaaagttg tcacttaatg acaaagtgtc gaagtttatt ccgaacctaa cgcgcgcaaa
      361 tgaggtaaca gttcgtcagc tgctttcgca cacttcggga taccaggact actggccaca
      421 ggattatgtg atgccgatga tgctgcagcc cgttactgca gaaaagatcc tggacatgtg
      481 ggcgcgtaaa cctctggact tcgatccagg aacaaagtgg cagtacagca acacaaacta
      541 cgtcatcgcc gggctgatca ttgagaaggc cagcggaatg ccgctgctcc aattccttcg
      601 cgaacgagtc ttcacgccgt tgggaatgaa aagcgtggcc aacatcgacg agaaggccct
      661 cggcgatacc gacgctgtgg gctatctgcg ttatggcctc gggcctttgc gacaggctcc
      721 gaaagagggc ccaggctggt tgtttgcagc gggtgaactc gcgatgccgg cacaagatct
      781 cgcgaagtgg gacatctcga tcatggatcg gaaactcatg aagcccgagt cgtatcgtga
      841 gatggaaacg gaaatgcaat tgaagactgg tatcggaact cgctacggtc ttggtttgag
      901 cgtaggcatg gaagccggtc accgcgcggt gtcacacggt ggcgaggttt cggggttcac
      961 ggctgagaac gttgtgtttc cagatgatcg agttgcagtt gtcgcactta gtaaccagga
     1021 cgcagcgggc gccgcttctg gtattgctca cggcattgtt cctatgcttt tcactgtcga
     1081 cgatccaacc actccagcga agacagaaca ggcgcgtaag attctggaag gacttcaaaa
     1141 aggaacgatc gatcgatcgc tgttcaccag ta
//
LOCUS       DATCGC010000040         3452 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_433488, whole genome shotgun sequence.
ACCESSION   DATCGC010000040 DATCGC010000000
VERSION     DATCGC010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3452)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3452)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3452
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_433488"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            306..1565
                     /locus_tag="VIJ87_00425"
     CDS             306..1565
                     /locus_tag="VIJ87_00425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442948.1"
                     /translation="MQEFQKLGELIESRWRAQNYNDDRFPEIAAEALAECDLTGKVDP
                     WDIIRWVHSTPNLPRQQDPRGKFGNPPITLFVGPRFYVDVYFWLDGTTSIHQHAFSGA
                     FQVLLGSSVHSRFRFEQEQEINPYFLIGNLSLQSVSLLAKGDTRQILPGHEFIHSLFH
                     LDRPSATITVRSNHSPSDAIQYSYLKPYIAYDPFFEEDSLVKKIQTVSLLLSMKHPEA
                     DRFIEALIHDADFQTTFSILKTSFEFLGNNQLEDLFQIKKSANRFQSLIDRARLRHGK
                     LVDRLPEVFEEQLRQKDIVQRRGAIEGDKHRFFLALLLNVPNRSGVLELIKNKFPDAD
                     PVELAVSWIKELAAIRIFGSHEPNVLGLEGFDASHLVVFEGLLNGLEDEQIVLLTNQK
                     TSLPKSTIVEALALIRALPLFKSIFKK"
     gene            1610..>3452
                     /locus_tag="VIJ87_00430"
     CDS             1610..>3452
                     /locus_tag="VIJ87_00430"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY5442949.1"
                     /translation="MSKTPQILSTKLRTVLSQFPYVPRTFGLVWQVAKGWTVAWIVLL
                     IIQGVLPATTVYLTKLVVDGLVRALRPDSSWADRRSVLILIAILALVLLLIEGVRGIL
                     TWVRTIQSEFLRDHITDLIHEKSTAVDLSFYEFPDYYDHLHRARVEASYRPNALLENL
                     GSLLQNSITLIAVGAILIPLGPWLSLALIVSTIPAFLTVVRYAVGHYRWRQRITPDER
                     RTWYFDWLLTSGDAAAEIRLFGLGRHFQDAYQALRRRLRNERLEMEQRQVLAQLAAGI
                     TSLAIIGASLAWMVWRALQGFVTLGDLALIYAAFNQGQQLMRSLLENVAQIYANTLFL
                     SNLFEFLSQESLIKDPVSGDAIAPEQISQQIEFQNVTFRYPDSERNALDDLNLTIPVG
                     QIVALVGPNGAGKTTLLKLLCRFYDPVGGTIRIDNNDLKRIPLLRLRRLVTAVFQQPV
                     HYNATLSENIEYGDLDNEPGPEKILAAAAAAGVEDILPRLPNGFDSLLGRSFAGGAEL
                     SGGEWQRVALARAFLRQAPIIILDEPTSALDPWAEADWLVRFRKLAAGRTGIVITHRL
                     TTAMHADVIHVMEHGRIVESGTHDQLLALKGRYAESWAQQKREAIDGV"
BASE COUNT          839 a          895 c          868 g          850 t
ORIGIN      
        1 cactcgacgc caatccaaac cgactggtgg cggtggcggt cgcgacgctt ccgagtcgaa
       61 taagctccga acgcacgcta gcaaaaacgg gaattcttgt gtcacgagat acgctttggg
      121 ttcactttcg ctatctttag cagcgtcggc attctgactg attgagtgat cgagacgtgt
      181 gggtcggctt ttctgacatg gacggaggga gcgtcaatca ctcgaaaacg cccacattga
      241 cagtaaggca tgattgctac ctaatcaaaa actgattcta catcagggaa atcaggggag
      301 tctctatgca agagttccaa aagcttggtg agctaataga aagccggtgg cgcgctcaaa
      361 actacaacga tgatcgattt ccggagattg ctgccgaagc gcttgctgag tgtgacctaa
      421 ccggaaaggt tgatccatgg gacatcattc gctgggtgca ctctacccca aacttacctc
      481 gacaacagga tcctcgcggt aagtttggaa acccgccaat cacattgttt gtcggcccca
      541 ggttctacgt ggatgtttac ttctggcttg acggcactac aagcatccat caacacgcat
      601 tttctggagc gtttcaagtc ttgctgggaa gcagtgtaca tagcagattt cggttcgagc
      661 aggaacagga gatcaaccct tactttctaa tcggcaacct ttctctccag tccgtttctc
      721 tgttggccaa aggagataca agacagatcc ttccgggcca tgagttcatt cactcgttgt
      781 tccatctcga caggccctca gccacgatta ctgtgagaag caatcactcg cccagcgatg
      841 ccattcaata ctcatatctg aagccctaca ttgcgtatga tccttttttt gaagaagatt
      901 ccctggtcaa gaaaatccag accgtgtcgc tgttgttaag catgaagcat ccggaggcag
      961 atcgcttcat agaggcgctc attcatgatg ctgattttca aacgaccttc tcaattctta
     1021 aaacaagctt tgagtttctg ggcaacaatc aactggagga tctctttcaa ataaagaaaa
     1081 gcgccaaccg gtttcagtca ctaatcgaca gagcacggtt acgacatggc aagcttgtgg
     1141 atcgactccc tgaagtcttc gaggaacagc tgcgccagaa agatattgtc cagcgacgtg
     1201 gagcaatcga gggggacaag catcgctttt ttcttgccct tctgctgaac gtaccaaaca
     1261 gatcaggggt gcttgagctg atcaagaaca aattcccgga tgccgacccg gtggagcttg
     1321 ctgtttcctg gattaaggaa ctcgcagcta ttcggatctt cggctcacac gagcccaacg
     1381 ttctgggtct cgagggcttt gacgcaagcc acttggttgt gttcgaaggt ctgctaaacg
     1441 gacttgaaga cgaacaaata gttctcctta caaaccagaa aacgtcgctg ccgaaaagca
     1501 cgattgtcga agctctagca ctgatccgag ccttgccgct cttcaagtca atattcaaga
     1561 aatagcgatc gcgattgagg cgagtaagcc attagacgcc tggcattcaa tgagcaagac
     1621 tccacaaatc ctctcaacca aactacgcac tgtgctgagc cagtttccat atgttcctcg
     1681 cacattcggt ttagtgtggc aagtagcaaa aggttggact gtcgcgtgga tcgtcctctt
     1741 aatcattcaa ggcgtcctgc ccgcgactac ggtgtatcta accaagcttg tcgtggatgg
     1801 acttgtaaga gcgctcagac cagatagttc atgggcagac agacgttccg tactgatact
     1861 catcgccatt ctcgcgttgg tgctgctgct gatcgaaggt gtgcgcggga tactcacctg
     1921 ggtacgcacg attcaatcgg agtttctgcg agaccatatc actgacttga ttcatgaaaa
     1981 atcaacagca gtggatttgt ccttctatga gtttcccgat tattacgacc acctacaccg
     2041 cgcacgcgtc gaggcaagct atcgaccgaa cgcgttgctg gaaaatctcg gaagcctatt
     2101 gcaaaacagc attactctga ttgctgtcgg ggcaatcctc atcccgctcg gcccatggct
     2161 gtcgctcgcc ctcattgtca gcactatacc ggcctttctc acagtcgtgc gttatgcggt
     2221 cgggcactat cgatggcgcc aacgaatcac accggatgaa cgacgcacgt ggtacttcga
     2281 ttggttgctt acatccggcg acgccgccgc cgaaatacga ctcttcggtc tgggtcggca
     2341 ttttcaagat gcttatcaag cgctgcgtcg tcgcctgcgc aatgaacggt tagaaatgga
     2401 gcagcgccag gttctggccc aactagccgc cggcattact tcgctcgcga tcataggggc
     2461 ctccctcgct tggatggtgt ggagagcact tcaagggttt gtaaccctgg gcgacctcgc
     2521 attgatctat gcagctttca atcagggtca gcaattaatg cgctcactac tggagaacgt
     2581 ggcccagatt tatgccaata ctctcttttt gagtaacctt ttcgagtttc tctcacagga
     2641 gtctcttatc aaggacccgg tgtcaggtga cgccattgct ccggagcaga ttagccaaca
     2701 aattgaattt caaaacgtga ctttcagata tcccgatagc gaacgcaatg cgcttgacga
     2761 cttgaatctg acaattccag taggtcaaat tgttgccctc gtcggtccga atggtgccgg
     2821 caagacaacc ttgctgaaat tgctttgccg tttctacgat cctgtaggcg gaactattcg
     2881 catcgacaac aatgatctca agaggatccc actattgcgt ttacggcgcc tggtgacggc
     2941 tgtcttccaa caacccgttc attacaacgc aacgctgagc gaaaatattg aatacgggga
     3001 tctcgataat gagcctgggc cagaaaagat tctggctgct gctgcagctg ctggagtcga
     3061 agacattctt ccacggctgc ctaatggctt tgacagtctg ttgggaaggt cattcgctgg
     3121 tggtgccgaa ctaagtggcg gagaatggca acgtgtggcg ttggctcgcg cctttctgcg
     3181 gcaggccccc attatcattc tagatgaacc aaccagcgcg ctcgatccct gggctgaagc
     3241 cgactggctt gtacgctttc gtaagcttgc agctggcagg actggaattg tcattactca
     3301 tcgactgaca acggctatgc atgcggacgt tattcacgtt atggaacacg ggagaattgt
     3361 tgagtcaggc acgcacgatc aattgctcgc attaaaggga cgctacgcag agtcgtgggc
     3421 gcaacagaaa cgtgaggcca ttgacggcgt ta
//
LOCUS       DATCGC010000041         2218 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_300218, whole genome shotgun sequence.
ACCESSION   DATCGC010000041 DATCGC010000000
VERSION     DATCGC010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2218)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2218)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2218
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300218"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2054
                     /locus_tag="VIJ87_00435"
     CDS             <1..2054
                     /locus_tag="VIJ87_00435"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HEY5442950.1"
                     /translation="QMSGYNREELIGHTSLELNIWETPAARTNFINKLRELGSIQNLE
                     SKFRTKKGTVRVLLSSAEQLEIGSQQCLLIASSDITERVDTQQALRESEERFRILADS
                     SPVLIWINGLDGCEFVNRSYLEFVGRSMEQLLGMKWTSVVHPDDLESYLGEYEQSLQK
                     RRQFETQVRLRRADGEYRWFKSIGLPRFTPDGTFLGYVGSSVDVNDLKNAEAVLRESE
                     KRFRNMADTAPVMMWLADDRKGCTYVNKQWLDFTGRGIEEEIGEGWLKGIHPDDYENC
                     LQTFTAHFSERKPFEFEYRLRRHDGQYRWIIDSAKPWVSEEGVFLGYIGSCIDITERK
                     ESEVALQKAHKELHQLKNQLEAENIYLQEELLSDRTFGEIVGQSDAIKYVLFKVTQVA
                     ATDSTVLITGETGTGKELVARAIHSESLRKDRPLIKVNCGALSPTLIESELFGHEKGA
                     FTGASSRKLGRFELANGGTIFLDEIGELAPELQVKLLRVIQEHEFERLGGTKTLQVDV
                     RIIAATNRNLKQEVEAGRFREDLWYRLSVFPITVPPLRQRKEDIPLLVEHFVRRYAKK
                     SGKTITEVSPKAMQILQAHSWPGNVRELGNVIERAAIHTQGGVLKLVDRFEPVLQEEP
                     SGLQTLQELEHDYIVRTLENTGWRIEGQYGAAKILGLNPSTLRTRLQKLGIQRRRANQ
                     A"
BASE COUNT          619 a          502 c          592 g          505 t
ORIGIN      
        1 tacaaatgag cggttataac cgcgaagagc tgatcggtca tacctccctg gaactgaaca
       61 tatgggaaac tcccgcagct aggaccaact tcataaacaa attgagggaa ttgggatcta
      121 ttcaaaattt agagtctaaa tttcgaacga agaaagggac cgttcgagtt ttgctctcgt
      181 cggcggagca attggagatt ggcagtcagc agtgcttgct catcgcttcg agcgacatca
      241 cggaacgcgt ggacacccaa caggctttgc gggagagcga ggaacggttt cgcattctgg
      301 ctgacagttc accggtgctg atttggatca acggtctgga tggctgtgag tttgtgaacc
      361 gaagctatct cgaatttgtg ggtcgctcga tggagcagct actgggaatg aaatggactt
      421 ccgttgtgca ccccgatgat ctcgaatcgt atcttggaga atacgaacag agtcttcaga
      481 agcgcagaca gtttgaaact caagttcgct taaggcgtgc agatggagaa taccgttggt
      541 ttaaatccat aggtttaccg cgttttacac cagacggaac ctttctcgga tacgtgggat
      601 cgtccgtgga cgtgaacgat ctcaaaaacg ctgaggcagt tttgcgtgaa agcgaaaagc
      661 gcttcagaaa tatggctgac acggcacccg tcatgatgtg gctcgcggat gataggaagg
      721 gttgcaccta cgttaataag caatggctcg atttcaccgg acgcggaata gaagaggaaa
      781 tcggtgaggg ctggttaaaa ggaattcatc cagacgatta cgaaaattgt ctccagacat
      841 tcactgcgca cttcagtgaa cgaaaaccgt ttgagtttga atacagactg cggcggcatg
      901 atggccaata ccggtggata attgactcag ccaagccatg ggtttcggag gagggagtat
      961 ttctcggtta tatcggctca tgcatagata tcaccgagag aaaagaatcc gaagtggctt
     1021 tgcagaaggc ccacaaagaa ctgcatcagc tgaaaaacca gttggaagca gagaatatat
     1081 atctccagga agagttgttg tcagaccgta cgtttggaga gatcgttggc cagagtgatg
     1141 cgatcaagta cgtacttttc aaagttacac aggtcgctgc tacagattcc actgttctga
     1201 tcacaggcga gacaggtacc gggaaagagc ttgtcgcgcg agcaattcat agtgaaagcc
     1261 tgcggaagga tcgtcctctt attaaggtca actgtggagc tttgtctccc acactgatcg
     1321 agagtgaatt atttggccat gaaaaggggg cctttacggg tgcaagtagt cgcaagctcg
     1381 gtcgctttga actggcaaac ggaggaacga tttttctcga cgagattgga gagcttgctc
     1441 ctgagttaca ggtgaaactt ctccgcgtga tacaggagca cgagttcgag agattgggcg
     1501 gtactaaaac cctgcaagtt gacgtacgaa tcatcgccgc aaccaatcgt aatctcaaac
     1561 aggaggtcga ggcgggaaga ttccgtgaag acctttggta ccgattgagc gtgtttccca
     1621 taacagttcc gcctttacga cagcggaaag aagacatccc gctcctcgtc gaacattttg
     1681 tccgacgtta cgccaaaaaa tcgggcaaaa cgatcacaga agtttcaccc aaggcgatgc
     1741 aaatactgca agctcattcg tggccgggaa atgtcagaga gttgggcaat gttattgagc
     1801 gggcagccat tcacacgcag ggtggcgtgt tgaagttagt tgatcgtttc gagccggtat
     1861 tgcaggaaga accttctgga ctgcaaacgc ttcaggaact cgagcacgat tacatcgttc
     1921 gaaccttgga aaacaccggt tggcgcatcg agggccaata cggtgcggca aagatcctgg
     1981 ggctcaatcc aagtactctt cgcacgcgac tgcaaaagct cggaatacag cggcgacgtg
     2041 cgaatcaagc ctgaaaatat tcccgtggaa aaccgtaact tcgttgtaat aaagcgaatt
     2101 catcttcacc accacggact aaagcggttc ccgcgaaata tagtggccag ataagaccca
     2161 cacatcaccc ctccacacta taaatatctc taacttgctc ataacaaagg agccactt
//
LOCUS       DATCGC010000042         1118 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_100496, whole genome shotgun sequence.
ACCESSION   DATCGC010000042 DATCGC010000000
VERSION     DATCGC010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1118
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100496"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..675)
                     /locus_tag="VIJ87_00440"
     rRNA            complement(<1..675)
                     /locus_tag="VIJ87_00440"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          245 a          323 c          253 g          297 t
ORIGIN      
        1 ttgctgcaca gagtaagtcg ctgacccatt atacaaaagg tacgccgtca cccttgcggg
       61 ctccgactgt ttgtaggcgt tcggtttcag gtctttttca ctcccctcgt cggggtgctt
      121 ttcacctttc cctcacggta ctggttcact atcggtcgct gaggagtact taggcttgga
      181 aggtggtcct cccatgttca gacaggattg cacgtgtccc gccttactcg tggatacatc
      241 atcgcattac tcgtacgggg ctatcaccct ctaaggccca gctttcctga ctggttccga
      301 ttgtctttga tgtatcactg gcctggtccg cgttcgctcg ccactactaa cggagtctcg
      361 gttgatgtcc tttcctccag gtacttagat gtttcagttc cctgggttcg cttaaaacct
      421 cctatgaatt cagagatttc ataccttcac ttgataactg gaaatccaaa acctcacggc
      481 ttggtctcac acattgctgt atgaacccca agatacgaga tcttggagtt ccagctatcg
      541 aaggtgggtt tccccattcg gaaatccgtg gatcaaagct tcttcgcagc tccccacggc
      601 ttatcgcagc gtagcacgtc cttcatcgcc tctcagcgcc aaggcatcca ccgaacaccc
      661 ttaaggcact tgattgctct cattatcaat gtccacacac tcggcagaat gttgtccgca
      721 caattgcctt gagatcgaaa cctcaaaaca cgcaccctcg acgaatgcta tgtacggccg
      781 gacaatgatt agaaagacca gcttgcttcg taagatcaac ccgatagcga ggcggtcaag
      841 cttcgctaga aagatcattt acaactctct catcttgcga tgagcgagcg ccgaaatgac
      901 ctggagatta cgaatgagat tccgcaaaat tgcttttgca gatcccaaac tcggatcaat
      961 ctcctcttta cgatgtcaga aatcacgcac gtcactatcc atccggacag cgcgtgcgaa
     1021 gtgatgtttc gcggacgata ttctttggat cggtagccgt taggcccgtc tcgagccggc
     1081 ccgtcttcgc tcttcgagct acaacgtggc ggccctcg
//
LOCUS       DATCGC010000043         1123 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_690, whole genome shotgun sequence.
ACCESSION   DATCGC010000043 DATCGC010000000
VERSION     DATCGC010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1123
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_690"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..230)
                     /locus_tag="VIJ87_00445"
     CDS             complement(<1..230)
                     /locus_tag="VIJ87_00445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442951.1"
                     /translation="MTLSSSRHVALRFTLCLVMTLVGFSGVCAQELIKDSAKPVSTSS
                     KPTVNERVRLLESELERQNSKLDQLQKTIAEQ"
     gene            517..933
                     /gene="ndhC"
                     /locus_tag="VIJ87_00450"
     CDS             517..933
                     /gene="ndhC"
                     /locus_tag="VIJ87_00450"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF012717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HEY5442952.1"
                     /translation="MLLQAVASTTNSNIGSPITAYWPVMIFFGVAVIFPVLPLILGRF
                     LRPIKYEKGKMRPYECGIDPTTEAHDRFTVRYYIVAMLFLIFDVETIFLLPWAIIFMG
                     DDFSFTKFALVEMFVFIAILVVGYYYAWRKGALEWA"
BASE COUNT          252 a          246 c          275 g          350 t
ORIGIN      
        1 tgttgttcgg caatggtctt ttggagctgg tccagtttgc tgttttggcg ctcgagttcg
       61 ctctcaagaa ggcggacacg ttcgttgacg gttggcttac ttgaagttga aactggcttt
      121 gcagagtctt taattagttc ctgcgcacaa actccgctga aaccaaccag ggtcattaca
      181 aggcaaaggg taaaacggag ggcgacgtgt ctgctgcttg agagcgtcat ggttttctct
      241 atcctctgag ttcagattgt tgcgggcaga accggtattt atgggacttc tgagcatatg
      301 gccgatgtct taaattaatc ttgctatgaa gttacattga tgtgaactgg tgaaactgtc
      361 ccttgggacg gggctctggt gacttatcgt caccgatgac gttgaactgg agttcgttta
      421 ctgtaagttt ttaaagagtg cgttgacaga aatcttgccc gacgcttact attttgccgt
      481 tcatcaacgt catccgcact tctgcatgtg agaacaatgc ttcttcaagc agtagcttcc
      541 accacaaact caaacattgg cagccccatt acggcctatt ggccggtaat gatctttttt
      601 ggcgtcgccg tgatttttcc agtcttgccg ttaattctgg gccgctttct acggccgatt
      661 aagtacgaaa aaggcaagat gcgaccctat gagtgcggca tcgacccgac tactgaagct
      721 catgatcgct tcactgttcg ttactacatc gtagccatgc tctttttgat tttcgacgtc
      781 gaaacgatct ttttgcttcc ttgggcgata atcttcatgg gtgatgactt ctcgtttacg
      841 aagtttgcgc tcgttgagat gtttgtcttc atagcgatcc tcgttgtggg ctactactac
      901 gcttggcgca aaggtgcgct ggagtgggcg tgaaggtatt gaagattttt gattgccgat
      961 tgcagattgg cgtgtgctgc aaattttcgt ttttgaacct gaacgcttat tgatgcgcta
     1021 gcaaaccaat acaatcttca atctgaaatc tgcaatcttc aatacactat ggctgaacac
     1081 gaagaaggat ttgttctaac cagcgtcgat tcaattatga act
//
LOCUS       DATCGC010000044         1112 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_466742, whole genome shotgun sequence.
ACCESSION   DATCGC010000044 DATCGC010000000
VERSION     DATCGC010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1112)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1112)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1112
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_466742"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            234..>1112
                     /locus_tag="VIJ87_00455"
     CDS             234..>1112
                     /locus_tag="VIJ87_00455"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Clp protease N-terminal domain-containing
                     protein"
                     /protein_id="HEY5442953.1"
                     /translation="MFERYTEKARRVIFFARYEASQFGAPAIEPEHLLLGLMREDKTL
                     TGRFFPRAQVSIESIRKEIEGRTLLRDKISTSVELPLAPETKHVLAYAHEESDRLQHR
                     HIGTEHLLLGLLREERSMAAEILYERGLRLNAVRDEIARQSGADARTSQKKDTPHLVE
                     FSRDLTEDASNDKLDPLIGREAEIERVVQILCRRTKNNPVLIGEPGVGKTAIVEGLAQ
                     RIVRGEVPSFLENKRILSLDLSLIVAGTKYRGQFEERLKQIMRELVENPQYIVFIDEL
                     HTLVGAGSAEGSLDAAN"
BASE COUNT          283 a          257 c          286 g          286 t
ORIGIN      
        1 acaacgatag tctagccagt ctgtgtgatc gagtaatgct actggatgag ggtcgtatta
       61 cgggagtttg atgattctca tctgaaaaaa ccatcgagtt atgtctttat atctaattga
      121 aatcgtacaa agcttctgga gccctctagt gatgggttat aatgccaacg cttgccgggc
      181 taattaaatt tcgccaggcg cgataatcat aggaaccttt tcgacaaaac aagatgttcg
      241 aacgctacac agaaaaagcg cgcagagtca tcttcttcgc gcgttacgaa gcatcacagt
      301 ttggcgctcc ggcaattgag cctgagcatc tcttactggg tttaatgcgg gaagacaaaa
      361 ccttaaccgg ccggtttttt ccgcgggctc aggtctccat tgagtcgatt cgtaaggaga
      421 tagagggccg gactctgtta cgagacaaga tttcgacgtc agtagaactg cccctggcgc
      481 ccgagaccaa gcatgttctc gcttacgccc acgaagagag cgatcgctta caacaccgtc
      541 atatcggtac cgaacatttg cttttggggt tactgcgtga agagcggtca atggccgcgg
      601 agatcttgta tgaacgcgga ctgcgcctca atgctgttcg agatgaaatt gcgagacaat
      661 ccggtgccga tgcgcgaacc tcgcaaaaga aagacacgcc ccaccttgta gagttttctc
      721 gtgatctcac cgaagatgcg tctaacgaca agttagatcc attgattggt cgtgaagctg
      781 agatcgaaag agtcgttcag attctttgtc gacgtaccaa gaataatccc gtcttgattg
      841 gtgagcccgg tgttggcaag accgctatcg tcgaagggct cgctcagcga atcgttcgag
      901 gtgaggttcc ttcttttctt gaaaacaaac gaatactttc actcgacttg tcgctgattg
      961 ttgccggaac taaatatcgg ggtcagtttg aagagcgctt gaaacagatc atgcgcgaac
     1021 tggttgagaa tccgcagtac atcgttttta tcgacgagtt acacacgttg gttggcgctg
     1081 gttcagcaga aggttcactt gatgccgcta at
//
LOCUS       DATCGC010000045         1438 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_67262, whole genome shotgun sequence.
ACCESSION   DATCGC010000045 DATCGC010000000
VERSION     DATCGC010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1438)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1438)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1438
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67262"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..215)
                     /locus_tag="VIJ87_00460"
     CDS             complement(<1..215)
                     /locus_tag="VIJ87_00460"
                     /inference="COORDINATES: protein motif:HMM:NF013315.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442954.1"
                     /translation="MNPLVTTFQRRFARMRRRQKVGRAYDMALEIARILKPGAMVLDV
                     GCGTGYIAHHLSALLRTSVVGLDVATHA"
     gene            218..397
                     /locus_tag="VIJ87_00465"
     CDS             218..397
                     /locus_tag="VIJ87_00465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442955.1"
                     /translation="MRLLWASKVPLCENVLLHFATVYYRGNRATGAKIFRKGIETGEG
                     ELAIEVMRLVWTRSP"
     gene            434..>1438
                     /locus_tag="VIJ87_00470"
     CDS             434..>1438
                     /locus_tag="VIJ87_00470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442956.1"
                     /translation="MAKIIAASLVLTIFVCTMAQRNSRMNSQSTLSSGYWSLEKSQPL
                     IDKTQTIRLSPDLSQLTEGERKAVEKLLAVGRIFQQLYEEQRHQQALTSFHDLTELDK
                     KMGSPAATQNLLTLYRLFQGPIATTLDNQREPFLPVEPVTPGKNMYPRGTTKALLSTP
                     SLRNKDELLAARTVVRVARASDLREDINRLLKYPALQTLHPNLLNSLQGLETLKRSYQ
                     PRNRIPDEEAGYYAVPYSVAYADELMRAFTLLNEAADAVDKDDGEFARYLRNRARDLL
                     SNDYESGDASWVTGRFKNLNAQIGSYETYDDELFGVKTFFAFSLLLTRQQETTALRQA
                     M"
BASE COUNT          377 a          369 c          359 g          333 t
ORIGIN      
        1 gcgtgagtgg ctacatctaa tcccacaacc gacgttcgaa gtagcgcgct tagatggtgg
       61 gcgatgtatc cggtgccgca accaacgtct aacaccatag caccaggctt caatattcgc
      121 gcaatctcaa gcgccatgtc gtaagcgcga cccacttttt gtctacgacg catacgtgca
      181 aatcggcgct ggaatgtggt cacaagagga ttcatctatg cggttacttt gggcaagcaa
      241 ggtaccgctt tgcgagaatg ttttgttgca cttcgcgaca gtgtattacc gaggcaaccg
      301 cgcaactgga gcaaaaatct ttcgcaaagg aattgagaca ggtgagggtg agctcgcaat
      361 agaagtcatg cggctggtct ggacgcgaag tccgtaattc gtcaaaatga aaaaaactca
      421 ttcgaggtaa tgcatggcta aaataatagc ggcgtcgcta gtcctgacaa tatttgtttg
      481 cacgatggcc caacggaact cacgcatgaa ttcgcaaagc acactctcct ctggttattg
      541 gtcgctcgaa aagagtcaac ctctgatcga taagacccaa actatccgcc tatctccaga
      601 tctttctcag ttgactgaag gcgagcgtaa ggctgttgaa aagttgttgg cggtcggtcg
      661 aatattccaa cagctctacg aagagcagcg ccatcaacag gcactcactt cgttccatga
      721 tctgacagag ttagacaaaa agatggggtc acctgccgct acgcaaaacc tgttaacgct
      781 ctatcgcttg ttccagggac cgatcgctac gacgctggat aaccaacgtg aaccctttct
      841 tcccgtcgag ccggttacgc cggggaagaa catgtatcca agaggcacaa ccaaggcgct
      901 gctttcaacg ccatcgctca gaaacaagga cgaactgctt gcggctcgca ccgttgttcg
      961 tgtcgcccgt gccagtgacc tacgcgaaga catcaatcgc ctactcaaat atccggcgct
     1021 ccaaactctt catccgaatc tgctgaatag tcttcaaggg cttgagactc tcaaacgctc
     1081 ttatcagcca cgaaaccgca tacccgatga ggaagccggt tactatgccg tgccttattc
     1141 ggtcgcctat gccgatgagt tgatgagagc ttttacactt ttgaatgaag cggcggatgc
     1201 cgttgataag gacgatgggg agtttgcgag atatctccgc aatcgtgctc gcgatctttt
     1261 gtcgaacgac tatgagtcgg gtgatgcgag ttgggtaact ggaagattca agaatctaaa
     1321 cgcccaaata ggatcgtacg aaacctacga cgacgagttg tttggagtca aaacgttctt
     1381 tgcgttttca ctgttgctga ctcggcaaca ggaaacaacc gcactccggc aagcaatg
//
LOCUS       DATCGC010000046         1077 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_466773, whole genome shotgun sequence.
ACCESSION   DATCGC010000046 DATCGC010000000
VERSION     DATCGC010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1077)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1077)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1077
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_466773"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            62..>1077
                     /locus_tag="VIJ87_00475"
     CDS             62..>1077
                     /locus_tag="VIJ87_00475"
                     /inference="COORDINATES: protein motif:HMM:NF015644.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0182 family protein"
                     /protein_id="HEY5442957.1"
                     /translation="MILCAALAYSLLGLPQRVLKPTVRWSSGAAFRAVCCALALFLVV
                     LSWRTYLARFPFLWDDHQTFAGVTYTEAHYVLPALLMVCIALIVAAVISLVNAFAVRR
                     FRLLVIALSLPLVVYVIGVLLVPSYVQSFIVKPNELDRETPFITHNIEWTRKGFGLDQ
                     IELREFPAEPTVQALDIANNRESFENIRLWDWKALQDTLKQIQAIRTYYDFQDVDVDR
                     YSVLGQMRQTMVAPREINDAKLPESSRNWVNERLIYTHGYGITMNNANGFTPEGLPQF
                     VISNMPVESTAPDIKVTRPEIYFGELTDRDVYVKTKQKEFDYPQGDTNTYTSYEGTGG
                     IKIGG"
BASE COUNT          255 a          291 c          260 g          271 t
ORIGIN      
        1 ctatctgttt tcactacctg tctacgaggc ggttagcaca tggttcttag gagtcagctt
       61 catcatcctc tgcgcggcac tcgcatattc gctattgggc ctaccgcaga gagtattgaa
      121 accaactgtg cggtggtctt ccggtgccgc tttccgagcg gtgtgttgtg cacttgctct
      181 cttccttgtc gtacttagtt ggcgaactta cctggctcgc tttccatttc tttgggacga
      241 ccatcaaaca tttgccgggg tcacttacac ggaagcgcat tatgtcttac cggcgttgtt
      301 gatggtttgc atcgcattga ttgtcgcagc cgtcatttcg ctggtgaatg cattcgcagt
      361 gcgtcgcttt cgattgcttg tcattgcgct ttctctcccc ctcgtcgtct acgtcatcgg
      421 tgtcctattg gtaccgtcct acgttcaaag ctttatagtg aaaccaaatg aacttgatcg
      481 cgaaacacca ttcatcactc acaacatcga atggacgcga aaaggcttcg ggctggatca
      541 gatagagcta cgcgagtttc ccgcagagcc cacggtccag gctctcgaca tcgctaataa
      601 tcgcgagagc tttgaaaaca tccggctctg ggactggaag gctctgcaag acacgctcaa
      661 gcagatacaa gcaattcgca cttactacga ctttcaagat gtcgatgttg accgctactc
      721 cgtattgggt cagatgcggc aaaccatggt ggccccgcgc gaaattaacg acgctaagct
      781 tcctgaatcc tcgcgcaact gggtaaacga aagattgatc tatacacatg gctacggcat
      841 cactatgaac aacgccaacg gcttcacgcc tgaaggcctg ccgcagtttg tgatctcaaa
      901 catgccggtg gaatctactg cacccgacat aaaagtcacg cgacccgaaa tctacttcgg
      961 tgaactcaca gatcgagatg tctacgtaaa gaccaaacag aaggagtttg attacccgca
     1021 aggcgacacg aacacctaca ccagctacga gggaacgggt ggaatcaaga ttggtgg
//
LOCUS       DATCGC010000047         1027 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_267041, whole genome shotgun sequence.
ACCESSION   DATCGC010000047 DATCGC010000000
VERSION     DATCGC010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1027)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1027)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1027
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_267041"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1027)
                     /gene="cimA"
                     /locus_tag="VIJ87_00480"
     CDS             complement(<1..>1027)
                     /gene="cimA"
                     /locus_tag="VIJ87_00480"
                     /inference="COORDINATES: protein motif:HMM:TIGR00977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043714 - (R)-citramalate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citramalate synthase"
                     /protein_id="HEY5442958.1"
                     /translation="NLELIEDSVRYLSARVDTVIYDAEHFFDGYRSNPEYALDTLRAA
                     VAGGAQRIVLCDTNGGSLPDDVAEATRTVAQQISVPLGIHCHNDGELAVANTLAAVTA
                     GVTHIQGTINGYGERCGNANLCSVIPNLELKLGREVVGGARLKHLRETANLVSEMANL
                     SLHSSAAFVGDSAFAHKGGVHVSAVERNPATYEHVAPELIGNRRRVLVSDLSGRGNLL
                     AKARELEIDLDEEQGVLEELKRLEHDGFEFEAAEASFELLVNRLRRRREPYFELVSFR
                     VIDEHLGSEMPMSEATVKIRVGDHMEHSAASGNGPVNALDRALHRALTKFYPSLENVY
                     LVDYKVRV"
BASE COUNT          246 a          311 c          232 g          238 t
ORIGIN      
        1 acactcgaac tttgtaatca accagataaa cgttctctag tgaggggtag aacttcgtta
       61 acgcacgatg tagcgctcgg tccagtgcat tcaccggacc gttcccactc gctgcagagt
      121 gttccatgtg atcgccaacc cgaatcttca ccgtcgcctc actcataggc atttcacttc
      181 caaggtgctc atcaatgacg cgaaagctca cgagttcaaa atatggttcc cgtcgacgtc
      241 gcagtctgtt caccagcaac tcaaagcttg cctcggctgc ttcaaactca aacccatcgt
      301 gttccaaacg tttcaactct tcaagcacac cctgctcttc atcaaggtca atctctaatt
      361 cgcgcgcttt ggccagaagg tttccacgtc ccgacaaatc ggaaaccagt accctgcgtc
      421 gattaccgat caactccggc gcgacgtgtt cataggtagc cgggtttcgc tcaaccgcag
      481 acacatgcac tccgcccttg tgggcaaagg cactgtcgcc aacaaacgca gcactggagt
      541 gcagcgaaag attggccatt tcacttacaa ggtttgcagt ttctctgaga tgtttcaggc
      601 gggcgccccc cacgacttcc ctacccagtt ttagttcaag attcggaatc actgaacaca
      661 ggttggcatt tccgcatcgc tcgccatatc cattaatcgt cccctggata tgtgttaccc
      721 ccgcggttac tgcggccagc gtattagcca ctgcgagttc gccatcgttg tgacagtgaa
      781 ttcccaacgg cacagagatt tgttgagcga cagttcgagt cgcctcagca acgtcgtcgg
      841 gcaaacttcc gccatttgta tcgcacaaca caatcctttg agccccaccc gcaacagccg
      901 cgcggagtgt gtcgagcgca tactcaggat tcgagcgata cccgtcgaag aagtgctcag
      961 cgtcgtaaat gacagtatcg acccgcgcag aaagatagcg aacagaatcc tcgatcagtt
     1021 cgagatt
//
LOCUS       DATCGC010000048         1319 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_33995, whole genome shotgun sequence.
ACCESSION   DATCGC010000048 DATCGC010000000
VERSION     DATCGC010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1319)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1319)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1319
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33995"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(397..801)
                     /locus_tag="VIJ87_00485"
     CDS             complement(397..801)
                     /locus_tag="VIJ87_00485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442959.1"
                     /translation="MSIDFQDITIIANPEQAQVRDGSRRHSKKFPFQLSGAPTPEWVA
                     LFNREWAMRTVSNRAASVHGDILVLECAIEELPLLAENLEVDMTAANQQYRERMLRQK
                     VKEQESGDEGQERERTDDNAAIIDALAKLKER"
     gene            complement(892..1041)
                     /locus_tag="VIJ87_00490"
     CDS             complement(892..1041)
                     /locus_tag="VIJ87_00490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442960.1"
                     /translation="MNKRARKRLKEAIEKKNLERQKTLKEQSSASSQTKERRGFTVKP
                     EKKRG"
BASE COUNT          307 a          345 c          277 g          390 t
ORIGIN      
        1 gtttgcattt ctttaagcca ctcaacaatc cggttccaag tcagaatgct ttgggacgcc
       61 aaaaacacca tcaacaagtt acattcgcac tgccaattgc tttattgagt ggtaacatct
      121 tggtaacgaa gctccccgaa aacagtaatg cctgaagaag ttgacgttaa caacttgccg
      181 cctttccgaa acggctaccc ggaaagctgt gagtgagagc ttttcgcgaa tggccccacc
      241 atcgccacgt ttagtttgcc accgaaaatc tcgcgctacg catgtcgagc gaagcctcgc
      301 cggcgcaata gaacccatca actaacttct aacataggcg ggtgacttca atttattagc
      361 ttagtttatc tgagctaaga ggttggcttt acttcttcat ctttctttaa gcttggccag
      421 agcatcaatt atcgcagcat tatcgtcagt acgctccctc tcctgacctt cgtcacctga
      481 ttcctgttcc tttactttct gacgtaacat tcgctcgcgg tactgttgat tggcggctgt
      541 catgtcaact tctaaattct cggcaagcaa aggcagttct tcaatggcac attctagtac
      601 gaggatgtcc ccatgaacgc tcgccgccct attcgagacc gtcctcattg cccattccct
      661 attgaacagt gccacccact caggggtggg cgcgccagaa agttggaagg gaaatttttt
      721 ggaatgtctt ctggagccat cacgcacctg ggcctgttct gggttggcaa taattgtgat
      781 gtcttggaaa tcgatggaca tcagattctc ctttagctct cacttatcct atctcaacac
      841 cttttgctca tatcgtctct acgctcgctt tcagcgataa ctttcattta attaaccacg
      901 cttcttctca ggcttcactg taaagccacg tcgctcttta gtctgcgaag aggctgaact
      961 ctgctcctta agcgtttttt ggcgctcgag gtttttcttc tctatcgctt ccttcaatct
     1021 ttttcttgct cgtttattca tggcgggatt atacagagta gatccgaaca gttgtacggg
     1081 tggtttcggg gattccttct gagtgactca aattcgttct tcgatccgtg acaagtttaa
     1141 ccattgcctg ggacgaagtt catgagtcgc agcaacataa ggcgacgaaa agcgtgtcgg
     1201 tcttgaatgg aaagagacgc tcaacgcgtc cattaagcgt ccattaacga tcctagagta
     1261 cctctgacta ccttacggtg ctatccatgc cgcaaagttt ctttgaattc ctacaaatc
//
LOCUS       DATCGC010000049         1050 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_233697, whole genome shotgun sequence.
ACCESSION   DATCGC010000049 DATCGC010000000
VERSION     DATCGC010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1050)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1050)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1050
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_233697"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1050
                     /locus_tag="VIJ87_00495"
     CDS             <1..>1050
                     /locus_tag="VIJ87_00495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442961.1"
                     /translation="FWLRGQRVAESTDRNPNRYYWLTGASFGAMIASKYVPHMLAISM
                     SYYWMFQSIPETRWRLGTKRILKFFTVMGIVFLILSPTILLPETWHQMGLFAGSKRIS
                     HDGYEFMGKLYTQRVDDWLNGIPVYFYAVFTWVKLPILTVAGFLIGLPLIFRRKLGDG
                     RYLLIFWLFFWVVFFCFPGGKFTRYYTTMLPAILITAALGIQFAGRWLANWIAKLAWG
                     SGIRHYVPASLAVIAISLSAIDAVQAAPHFRLFTNSLGGGMERAGTYFPHDEFYDASM
                     RDTITEIGRRARPSARVASESPLLASYYAQRENHGDLVCVSLSDPDGLNQLGVGDFVI
                     VARGRRYFSNDQLISS"
BASE COUNT          216 a          267 c          278 g          289 t
ORIGIN      
        1 cttctggtta agaggtcagc gcgtcgccga aagcaccgat cgaaatccca atcgctacta
       61 ctggctgacc ggcgcctctt tcggcgcaat gatcgcttcg aaatacgttc cccacatgct
      121 ggcaatcagc atgtcttact actggatgtt tcagagcatt cctgaaacgc ggtggcggtt
      181 gggcacaaaa cgaatcctca agttctttac ggtgatggga attgtgttct tgattctgag
      241 tccaacaatt ctcctgcctg aaacatggca tcagatggga ctctttgctg gcagcaaacg
      301 aatcagccac gacggctacg agtttatggg caagctctac acgcaacgcg ttgatgattg
      361 gctcaacggc attccggtct acttctacgc ggtgttcacg tgggtcaagt tacccatcct
      421 gacggttgcc ggtttcttaa ttggtctacc acttattttc cggcgcaagc tcggcgatgg
      481 tcgttacttg ttgatcttct ggttattctt ttgggtagtt ttcttctgtt ttccgggtgg
      541 caagttcact cggtactaca caacaatgct gccggcgatt ttgatcactg cagctctggg
      601 aattcagttt gccggacgct ggttggcaaa ctggatcgca aagctcgcct ggggcagcgg
      661 cataagacac tacgtccccg ccagtctggc ggttatagca atcagtttgt ctgcaattga
      721 cgctgtgcaa gctgcgccac attttcgatt gttcacgaac agtctcggcg gcggtatgga
      781 gcgcgctgga acttactttc cacacgatga gttttatgac gccagtatgc gcgacactat
      841 tactgaaatt ggacgtcgtg cacgaccgag cgcacgcgtt gctagtgaga gcccgttgtt
      901 ggcctcgtac tatgctcaac gagagaacca cggagacttg gtctgtgtct cgttgtctga
      961 tccagatggg ttaaatcaac tcggtgtcgg tgatttcgtg attgtggcgc gtggccggcg
     1021 ttatttcagc aacgaccagc tgatttcatc
//
LOCUS       DATCGC010000050         1116 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_333631, whole genome shotgun sequence.
ACCESSION   DATCGC010000050 DATCGC010000000
VERSION     DATCGC010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1116
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_333631"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
BASE COUNT          268 a          278 c          294 g          276 t
ORIGIN      
        1 gccggcgtgc tttcggatat tccgatcgat taatccggca acttgttgct gtagagactc
       61 attttgtagc gtccaaagct cgctgccgca gggagtgcga gcggatgaga agcgcggcga
      121 gcgtcctagg tttgagtttt gacggcggag gttactgcca taggacactc aggcaaccaa
      181 ggttcttact cagttgaata ctggtacatt gccgatacca atgagctgct attgcttgtg
      241 gactggagcg tgagcgaaac gtttgaccaa ctcgatcgcc gtcatgcaat ccgcttcgtt
      301 ccaatacccc tcaccagcac aagcgattac cctgctatta tcaactgcga ctaggtgcca
      361 tcgccactga ccggtgctgt ctttgaacat tacgtactgc ataaccaggg aaaatacgtc
      421 tgcgtcgctt tgaaaatgca cgccggacag ctacgggatt tcgtgttgtg actgcccggc
      481 gattgttccc cccagaacaa tcaatatcct ctaagaaaac gcttgcgagg gcaattgcgt
      541 ttggggactc ggatgtaatt gtaatactta ggtaatgttg tcattcaccg cagcgctcgt
      601 cgaatgtgtt cgaccgccta atgggagtta ctccccctgt gatctgaacg acacgttcta
      661 agccccacgg cttttcttcg attcctgcgg ccactgctga cgttggagca aggctcgaat
      721 ggcgacgaac gagatggtaa acgccaaagt gaagcgcaac cgccgccgca tgtgtgccaa
      781 gatctttcga gtaaccaagc cccttccgct ggaatcggtt tagttctcgg cgaacggaga
      841 gatgagctcg ctcaatgtgc gaagtagtta gggtgcctaa gtctggcgag cattaccgtt
      901 ctattacagt ttaaccatct aaaagaatcc gattgagagt tgcgagcaag ttctcgataa
      961 tagaaatatg taccaagagg agggatccta tggtagtacc ctccagcttg tgcgacagca
     1021 agttcgcaag acggaaggcg tgtttactat tagaagtatt gcgcaatcgc tccacggaca
     1081 cctggttttg tcctctgtag gaagcgctgt aagaag
//
LOCUS       DATCGC010000051         2642 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_333632, whole genome shotgun sequence.
ACCESSION   DATCGC010000051 DATCGC010000000
VERSION     DATCGC010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2642)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2642)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2642
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_333632"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..422)
                     /locus_tag="VIJ87_00500"
     CDS             complement(<1..422)
                     /locus_tag="VIJ87_00500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442962.1"
                     /translation="MLIKPTTDKTLPWVDYSTLSAVNVCPRWGLIHNWHGKHLPSGVE
                     RVLPLEAGRAMHDVFACARLFDLLTAKPELRNNINAYAVRLLTNDMYPERWQQAMRYF
                     DTGEDSETRCMQMALSLLETSGYSDDPRDTRRTQANLE"
     gene            complement(412..579)
                     /locus_tag="VIJ87_00505"
     CDS             complement(412..579)
                     /locus_tag="VIJ87_00505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442963.1"
                     /translation="MTELERLELVLRRVHSDLSTTSRFAVSDELLMLKCIIDELSKMN
                     ADVNRRQTDVD"
     gene            complement(579..794)
                     /locus_tag="VIJ87_00510"
     CDS             complement(579..794)
                     /locus_tag="VIJ87_00510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442964.1"
                     /translation="MSDGFKVYKRKSRIELRPYVFGENLDGVSISAADKKNGSPKLGD
                     WIARNPKDHSDMWLVSAQYFADNYEAD"
     gene            complement(787..1038)
                     /locus_tag="VIJ87_00515"
     CDS             complement(787..1038)
                     /locus_tag="VIJ87_00515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442965.1"
                     /translation="MNYVQRARDVRLLVKEHGVERGLIKAVERLSEDNELLRQELAGV
                     VKTVDVMANIVSDISTVGAKLKDDFAKMQRDFRRGEEHE"
     gene            complement(1051..1383)
                     /locus_tag="VIJ87_00520"
     CDS             complement(1051..1383)
                     /locus_tag="VIJ87_00520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442966.1"
                     /translation="MSRSPPTTEAKARLARLRFKQQTTKRARIDLLLQPLIAAALKGP
                     FVRHLAVNERAGLIQFRFAGRRVQYWVGARKLLVSNAIASTVYIDYQPDQLVRDVAVT
                     NPNCAFNL"
     gene            complement(1346..1786)
                     /locus_tag="VIJ87_00525"
     CDS             complement(1346..1786)
                     /locus_tag="VIJ87_00525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442967.1"
                     /translation="MSNDDNGKVVKLRQPQVNKPVAGVGVGASSSGASVDEAINPKSF
                     MNMSDLEQDMFLQQLRERRMRVVEVLKAAKAAKSQATSIAAKVKLERKIDQLEKQLER
                     TTKALDKLEELVYDVRALTLQHTDTDITRVADNVKITTDNGSKG"
     gene            complement(1792..2235)
                     /locus_tag="VIJ87_00530"
     CDS             complement(1792..2235)
                     /locus_tag="VIJ87_00530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442968.1"
                     /translation="MTSPEKKELPLEARAIQCINTFLAPKTTQDAVDQVAAEFLTANL
                     LRTHAEKRYEAAKRSIAAAHEDKINDVRNRASESMMKSTIMLYGSDWVLNLNANRPAT
                     RCDVDELRTELVRMGISVDVLDEAIAKVTKKSTPALVISVTPVAG"
     gene            complement(2228..>2642)
                     /locus_tag="VIJ87_00535"
     CDS             complement(2228..>2642)
                     /locus_tag="VIJ87_00535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442969.1"
                     /translation="RHVCDNSWCCNPYHMLIGSQADNVDDMLQRERVGLKHYQIRRIM
                     QALEVGCTATDVCAMMKQGYNLSLDESVVRKIRMRVIYRHIDWPWGDAYANARKRRLA
                     ELRNQRLASDPKSAIISDSQQGATTHGEEKERKDD"
BASE COUNT          590 a          668 c          625 g          759 t
ORIGIN      
        1 ctctcaaggt tagcttgtgt acgacgagtg tcacgtggat cgtcactgta gccgctggtt
       61 tccaacagcg agagtgccat ctgcatacag cgcgtttcac tgtcttcgcc agtgtcgaag
      121 tagcgcatgg cttgctgcca acgctcaggg tacatgtcgt tagtgagtag tcgcactgcg
      181 taggcgttga tgttgttacg cagttcaggt ttagcagtta gcaggtcgaa taggcgagca
      241 caagcgaaca catcatgcat agcacggcca gcttcaagtg gtagtacacg ctcgacacca
      301 ctaggcaagt gcttgccgtg ccagttgtga attagccccc acctcggaca tacgttcaca
      361 gcagacaatg tagagtaatc aacccaaggc agtgttttgt ctgtagtagg tttaatcaac
      421 atcagtttgc ctcctgttaa cgtctgcatt catcttcgac aattcgtcaa tgatgcactt
      481 caacatcaac aactcatcag agacagcgaa gcgtgaagtt gtgcttaggt cgctgtgcac
      541 gcgacggagt actaattcga ggcgttctaa ttctgtcatt agtctgcctc atagttgtca
      601 gcgaagtact gcgcgcttac tagccacatg tcgctgtgat ccttgggatt gcgagctatc
      661 caatcgccta gcttgggtga gccgttcttc ttgtcggctg ctgatatgct aacaccatct
      721 aagttctcac cgaacacgta tggacgcagt tctatgcgtg acttgcgctt gtatactttg
      781 aagccatcac tcatgttcct ctccccttcg gaagtctcgt tgcatcttag cgaagtcgtc
      841 tttcagctta gcacctacag tagatatgtc agacacgatg ttagccatca catcgactgt
      901 cttcaccacg ccagctagct cttgacgtag tagttcatta tcctcactca gcctttctac
      961 ggctttaatc aagccacgtt ctactccgtg ttctttcaca agcagacgca catcacgtgc
     1021 tctctgtaca tagttcacca cattaacctc ctacaagttg aaagcgcagt taggattagt
     1081 cacagccaca tcgcgtacta gctgatcggg ctggtagtct atatacactg tagaagctat
     1141 cgcgttgctg actaacagct tacgtgcacc tacccaatac tgcacacgac gaccagcgaa
     1201 gcggaattga attagaccag cacgttcgtt gactgcaaga tgacgcacga atgggccttt
     1261 aagtgctgca gctattagag gctgcagcaa taggtcaata cgtgcacgct tggtggtttg
     1321 ttgtttgaag cggaggcgag ctagtctagc ctttgcttcc gttgtcggtg gtgatcttga
     1381 cattatctgc gacccttgta atgtctgtat cggtgtgttg gagagtaagt gcacgcacat
     1441 cgtatacaag ttcttcgagc ttatcgagcg ccttggtggt gcgttcaagt tgtttctcca
     1501 actgatctat cttgcgttct agcttgacct tggcagctat tgaagttgct tgagacttag
     1561 cagctttagc tgctttgagt acttcaacca cgcgcatgcg acgttcgcgt agctgctgta
     1621 ggaacatgtc ttgctctagg tcagacatgt tcatgaatga cttaggattg atagcttcat
     1681 caacactagc gccactgcta cttgcgccaa cgccaacgcc agccacaggc ttgttgacct
     1741 gaggctggcg cagcttgacg actttgccgt tgtcgtcatt ggacatgtgt attaccccgc
     1801 aacgggagtg acagagatta ctaacgctgg cgtagacttc tttgttactt tggcgattgc
     1861 ttcgtctagc acatcaacgc ttattcccat tcttactaac tctgttcgta gctcatcaac
     1921 gtcgcaacgt gtagcaggac ggttagcatt caggttcaac acccaatcac tgccgtagag
     1981 catgatagtt gacttcatca tgctctcact agcacgatta cgcacatcat tgatcttgtc
     2041 ttcgtgcgct gcagctatag aacgcttagc agcttcgtag cgcttctcag catgtgtgcg
     2101 gagtaggtta gcagtcaaga actcagcagc tacttggtcc actgcatctt gagtagtctt
     2161 cggtgctagg aatgtgttta tacattgtat agcacgtgct tcgagtggta gttctttctt
     2221 ctcaggacta gtcatcttta cgttcctttt cttcgccatg tgttgtagct ccttgttgac
     2281 tatcacttat tatagcagat ttaggatcag atgcaagtcg ttgatttctt aactctgcca
     2341 atctacgctt gcgcgcgttg gcataagcat caccccacgg ccagtcaatg tgcctgtaga
     2401 tcacacgcat acggattttg cgcaccacgc tttcgtctag tgatagattg tagccttgtt
     2461 tcatcattgc acatacgtca gtagcagtgc aaccgacctc tagtgcttgc atgatgcgac
     2521 ggatttggta gtgcttcaga cctacgcgct cgcgttgcaa catgtcgtct acgttgtcag
     2581 cttgtgagcc tatcaacatg tgatatgggt tgcagcacca cgaattgtcg cacacatggc
     2641 gg
//
LOCUS       DATCGC010000052         1092 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_200545, whole genome shotgun sequence.
ACCESSION   DATCGC010000052 DATCGC010000000
VERSION     DATCGC010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1092
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200545"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1092)
                     /locus_tag="VIJ87_00540"
     CDS             complement(<1..>1092)
                     /locus_tag="VIJ87_00540"
                     /inference="COORDINATES: protein motif:HMM:NF014774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEY5442970.1"
                     /translation="IDFQTTERFGVNALADFTWKDLLDLDSCTECGRCTAVCPANAVG
                     KELSPRDIIIGLRDRMHQNAFDSKAAIINAETATSPNALWQCTTCAACMEACPVFIEQ
                     MPKIVDMRRFLVMEEADFPESMQQAVMSLEKRGHPFSGTNATRMDWAEGLNVKHINDA
                     KDAEVLLWVGCGGALIERNQKVTRSTAILLEKAGVDFAIMGRDEKCSGDPARRIGNEF
                     LFETLAKDNVANLAKSNVKKVITACPHCFNTFKNEYPQYGGSYEVYHHSEFLAQLVDQ
                     GKLRPVSNSSSKVAFHDPCYLGRQNGVYDAPRQLVQISSSNSVELQRNREKSFCCGGG
                     GGMSFIDEPADKRVNQERAREVVETGADVL"
BASE COUNT          230 a          298 c          280 g          284 t
ORIGIN      
        1 agcacgtctg ctcctgtttc gaccacttcg cgagcgcgtt cctggttcac tcgtttgtcc
       61 gcaggctcgt cgataaagct cattccgccg ccaccgccac agcaaaaact cttctcgcga
      121 ttcctttgta gctcaacgga attgcttgaa ctgatttgga ctagctggcg tggcgcatcg
      181 tacacgccgt tctgtcgacc caagtaacac gggtcatgaa acgccacttt gctcgaactg
      241 tttgagacag gcctgagttt tccctggtca acaagctgcg ctagaaattc actgtggtga
      301 tagacctcat aactgccacc gtactgcggg tactcatttt tgaaggtgtt gaagcaatgc
      361 gggcaagccg ttattacttt cttgacgtta ctctttgcga ggttcgcaac gttgtctttt
      421 gccagggtct cgaatagaaa ctcgttaccg atccgtcgcg ctggatcgcc tgaacatttc
      481 tcatcacgtc ccatgatcgc gaagtcgaca ccagcttttt cgagaaggat tgcagttgac
      541 cgagtcactt tctgattgcg ttcgatcaaa gcaccaccgc agcccaccca gagaagaacc
      601 tcggcgtctt tcgcgtcgtt gatgtgtttg acgttcagtc cttctgccca atccattcgc
      661 gttgcgtttg tgccgctgaa gggatggccg cgcttctcta acgacatgac tgcttgctgc
      721 atcgactctg gaaagtcagc ctcttccatt accaggaagc gacgcatgtc gacgatcttg
      781 ggcatctgtt cgatgaagac cggacaagct tccatgcagg ccgcacaagt tgtgcattgc
      841 cagagggcgt taggtgaagt ggcagtttca gcgttaatga ttgcggcttt cgaatcgaat
      901 gcgttctggt gcatccgatc gcgaaggccg atgatgatgt cgcgcggaga tagttctttc
      961 ccgacggcat tcgcagggca cacggctgtg caacgtccgc actcggtgca ggagtccaga
     1021 tcgagcaaat ctttccaggt gaaatccgcg agagcattca caccgaaacg ttcagttgtc
     1081 tgaaagtcta tt
//
LOCUS       DATCGC010000053         2249 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_100595, whole genome shotgun sequence.
ACCESSION   DATCGC010000053 DATCGC010000000
VERSION     DATCGC010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2249)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2249)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2249
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100595"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..806
                     /locus_tag="VIJ87_00545"
     CDS             <1..806
                     /locus_tag="VIJ87_00545"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY5442971.1"
                     /translation="GAFMNSALATRSLMDAFLERGEPKRFVNVSSFAVYSNLSLKRGA
                     LLDETCPLEDAPQERFDAYGFGKLKQEHIVREYGNKHNLPYVILRPGYVFGPGKRELN
                     GRVAINTFGFLIQVGGSHLLPLTFVDNCAEAIVLAGLTAGIDGEVFNVVDDELLSGRQ
                     FLKLYKAKLERSSVRIPYVAAYGLCFLWEKYAKCSNGQLPAVFNRRRCAAEWKGNRYS
                     NQRLHQRLDWKPRVPMKEAMEAFLAQFDTNGEDRDQMSEVGSQLSAVRG"
     gene            1132..>2249
                     /locus_tag="VIJ87_00550"
     CDS             1132..>2249
                     /locus_tag="VIJ87_00550"
                     /inference="COORDINATES: protein motif:HMM:NF013567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEY5442972.1"
                     /translation="MLRIAIIGCGKVADQHVQAIHRIPDCKIVAVCDRELLMAKQLGE
                     RFGISACFPDLRELLHAASPDVVHITTPPQSHYSLAKQCLESGSHVYLEKPFTITADQ
                     AESLIHLAEGQGLRITVGHNYQFTLEMMEMRRLISEGYLGGRPIHLESYWSYDLGGSM
                     YAGAFLGSHAHWLHGLPGQLFHNIISHGIAKLAEFLDDDVPLIVATAHRSPQLSHSGG
                     SDLMDELRVLLRDKHETTALFCFSTQFRPALNRLRIYGPRNSLMVDILTGTLIRSPGA
                     SYKSYLTYFIPPLKNAREYFRNLRLNVTNFIRQRLYQDFGMKELIERFYNSIRTGGPP
                     AIPYREIILTARIMDEVFAQIYPEHASPTLAAVGLNTKV"
BASE COUNT          543 a          555 c          600 g          551 t
ORIGIN      
        1 ccggcgcatt catgaattcg gcgttggcta cccgcagtct gatggatgca ttcctcgagc
       61 ggggtgagcc aaaacgattc gtcaacgtca gttcgtttgc cgtttattcg aacctaagtt
      121 taaaacgtgg cgctctcctc gatgaaactt gcccattaga agatgcccct caggaacgat
      181 ttgacgctta tggttttggc aaactcaagc aggaacatat cgtcagggag tatggcaaca
      241 agcataatct gccttacgtc attctccgcc cgggatacgt atttgggcca ggcaagcgcg
      301 aactaaacgg tcgtgtcgca atcaatacgt ttgggtttct gatccaggta ggtggatcac
      361 atcttctgcc actgacattt gtcgataact gtgcggaggc tattgtgctc gctggtctga
      421 cggccgggat cgacggagag gtttttaatg ttgtagatga cgaactcctc agcggcagac
      481 aatttctgaa gctgtacaag gctaaactcg aacgatcttc agtgcgtatc ccctatgtcg
      541 ctgcatatgg gctctgtttc ctctgggaaa aatacgctaa gtgttcgaat gggcagctcc
      601 cagccgtttt taatcgtcgc cgctgcgcgg cagaatggaa agggaaccgc tactccaacc
      661 agaggcttca ccaacggtta gactggaagc cgagggtgcc gatgaaagaa gcgatggagg
      721 cgttcctcgc ccagttcgat acgaacggcg aggacagaga tcagatgtca gaggtcggaa
      781 gtcagctgtc agctgtcaga ggctgaagta aaagatagct atgcagatca aatcagcaaa
      841 ggatctaatc gtatatcaga agccgtacgc acttgcgatg gaaactttcg aggcgagtag
      901 gagatttccg gcggaagaga ggtatttcct tacggatcaa attcggcgtt cctcgaggtc
      961 tgtttgtaca aatattcgag aggcttgggc gaaacggaga tatgaagcgc actttttaag
     1021 taagttgacg gacgcggatg gtgaaaacgg cgaaactgaa acctggcttg attttgcctc
     1081 cgactccgag tcgtctgatc tctgacttcc gacctctgac ctctgaaagc tatgctccgt
     1141 atagcgataa tcggttgcgg gaaggttgcc gaccagcatg ttcaggccat tcatcgcatt
     1201 ccggactgca agattgtggc agtttgcgat cgggaactgc tgatggcaaa acaattaggg
     1261 gagcgcttcg gaatttccgc atgttttccc gatttgagag aactactaca cgctgcctct
     1321 ccagatgtcg ttcatattac gaccccgcca cagagccatt attcgcttgc caaacagtgc
     1381 ctcgaatcgg gaagccatgt ttatctggaa aaacctttca cgatcacggc cgatcaggcg
     1441 gaatcgttga tccacttggc tgaaggtcaa gggttaagaa taaccgtcgg ccacaattac
     1501 cagttcactc tcgagatgat ggagatgcgt cggctgatat cggagggcta tcttggcggc
     1561 aggccgattc atctcgaaag ctactggtcg tacgatttgg gaggctcaat gtatgctggg
     1621 gccttcctcg ggagccacgc tcattggtta catgggttac cgggacagtt gtttcacaac
     1681 atcatcagcc acggaattgc caagctggct gaattccttg acgacgatgt tccgctgatt
     1741 gtggccacgg cacatcgaag tccgcagctc agccacagtg gcgggtccga tttgatggac
     1801 gaactgagag tgctcctccg ggacaaacac gagaccacag cactgttttg cttttccact
     1861 cagttcaggc cggccttgaa ccgactccga atttacggcc cgcgtaactc gctaatggtg
     1921 gacattctga ctggtactct gatcaggagc ccaggggcgt cgtataagag ctatctgacc
     1981 tattttattc caccgttgaa gaacgctcgc gaatacttta gaaacctgag gctgaacgtc
     2041 accaatttca tccgtcagcg gctttatcaa gactttggaa tgaaggaact aattgaacgc
     2101 ttttataaca gtatccgcac ggggggtccg ccagccattc cttatcggga gatcatttta
     2161 accgctcgaa tcatggacga ggttttcgcc cagatctatc ccgagcatgc ttcaccgacg
     2221 ctcgctgccg ttggtctgaa tacgaaggt
//
LOCUS       DATCGC010000054         1692 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_200570, whole genome shotgun sequence.
ACCESSION   DATCGC010000054 DATCGC010000000
VERSION     DATCGC010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1692)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1692)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1692
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200570"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1615)
                     /locus_tag="VIJ87_00555"
     CDS             complement(<1..1615)
                     /locus_tag="VIJ87_00555"
                     /inference="COORDINATES: protein motif:HMM:NF012956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HEY5442973.1"
                     /translation="MKRIFLSALIGVGLLTLIFPLSGSEAARPPFDYPLVCRGGGDLK
                     PGAAEGAGNLGFEFKRGTKPAGEELKEGSCSWTDRGMYDAEPNRVSQHVEEVVGAPKP
                     FWYEELRSSDKYWTFMVSNNGRGQLIATSARPGGAPTTITTFIPPAEGLRTFYVNHEW
                     HNDRVNCENPFAFKLRVDDAPAGQVLVGYVNDYYAGSGPFPCEWNSKVDYRGTTWFDL
                     SEIFDKPSLQIVENATLKFKTVDGSVAAYDDQRRPITRVCEDRLSVANADSLKGFSDR
                     VSNYSGDVHFPASDPIATIKGCPPAGCSIDVTEVVNKWITGKIGYGFVIVGENEDWLD
                     KLIPHDKSVCQTRYTDFSLTVSYRPGLLAITTAPPKTPGVPGPGGLGQSLDIRKNVAL
                     ASNLATAKASSTSAPYSPAKAIDGEHQGLNWLSGGGWQGAGPTNNDWLQVDFKGRKTI
                     DEIDVYMVQDNFASPVEPDVSMPTFTKYGLTNFRVQFLTQFGEWRDVPALGNPVIGNT
                     NVLKRLTVPRGLFTQSIRIQVSDTPDKWCR"
BASE COUNT          379 a          470 c          415 g          428 t
ORIGIN      
        1 tgcggcacca tttgtcagga gtgtcgctca cttgtatccg aatgctttga gtaaatagac
       61 cgcggggcac ggttaaccgt ttcaacacgt tcgtattacc gatgaccgga ttcccgagtg
      121 ccggaacgtc cctccactcc ccgaactgtg tcaagaactg caccctaaag ttagtcaagc
      181 catacttggt aaacgttggc atcgagacgt ctggctcgac tggactagca aaattgtcct
      241 gcaccatgta gacatcgatc tcatcgatag ttttgcgtcc cttaaaatcg acctgcaacc
      301 aatcattgtt agttggaccg gcgccctgcc agccgccgcc gcttaaccaa ttaagacctt
      361 gatgttcgcc atcgatggcc ttggcgggag aatagggagc actggtcgat gaagccttcg
      421 ctgtagccaa gttagaagcg agggcaacgt tttttctaat gtccagagac tgacccagac
      481 cgcctggtcc ggggactcca ggtgtttttg gtggggctgt tgtaatagca aggagtcctg
      541 gcctgtaact cacggttaag ctgaaatcgg tgtagcgagt ctggcagacg cttttatcat
      601 gtggaatcag tttgtctaac caatcttcat tctcacctac gatcacaaag ccgtacccta
      661 tttttcctgt gatccatttg ttgaccactt ctgtaacatc aatgctgcaa cccgccggtg
      721 gacatccctt aatggttgcg atggggtcac tggcgggaaa atgaacatca ccagagtagt
      781 tgcttacccg gtcggagaag cccttcaacg aatccgcgtt ggcgaccgat aggcggtctt
      841 cgcacactct ggtgatcggt ctcctttgat catcataggc agcaacactt ccgtctactg
      901 tcttaaactt aagcgtggcg ttctcgacta tctggagtga aggcttgtcg aatatttcgc
      961 tcaggtcaaa ccacgtcgtg ccgcgataat cgactttgga attccattcg caggggaaag
     1021 gaccgctgcc tgcgtagtag tcgtttacgt atcccaccag aacctggcct gctggcgcat
     1081 catccaccct tagtttgaag gcaaacgggt tttcgcaatt cactctatcg ttgtgccact
     1141 catggttcac atagaaggtc ctcaagccct ccgcgggtgg tatgaaggta gtgattgtcg
     1201 tgggggctcc ccctggccgg gcgctcgtcg caatcaactg acccctccca ttatttgaaa
     1261 ccatgaaggt ccagtattta tccgaagaac gaagctcctc ataccagaac ggttttgggg
     1321 cgccgactac ttcttcgacg tgctgggaga cccggtttgg ttcggcatca tacatgccac
     1381 gatccgtcca tgaacacgac ccttctttca attcctcacc cgccggcttc gttccccgtt
     1441 tgaattcgaa acctaaattt cctgcacctt ccgcagcacc tggtttcaaa tcccctccgc
     1501 ctcggcagac gagtggataa tcaaacggcg gtcgcgccgc ttcgcttcct gagagtggaa
     1561 agatcaaggt cagcaaaccg acaccaatca acgctgataa gaaaatcctc ttcatctcta
     1621 ttctccttct cggtcaaggc agttgcggaa gagcgggcgg ttcttgtcga aggctctcag
     1681 gtgatcaacg ac
//
LOCUS       DATCGC010000055         1332 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_366942, whole genome shotgun sequence.
ACCESSION   DATCGC010000055 DATCGC010000000
VERSION     DATCGC010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1332)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1332)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1332
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_366942"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1332
                     /locus_tag="VIJ87_00560"
     rRNA            <1..>1332
                     /locus_tag="VIJ87_00560"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          366 a          305 c          394 g          267 t
ORIGIN      
        1 tgatctaccc ttggccagga tgaaaccgca gtaacatgcg gtggaggtcc gaaccagtgt
       61 tggttgaaaa cagcttggat gagctgaggg taggggtgaa aggctaatca aattccgtta
      121 tagcccgttc tccccgaaat agctttaggg ctagcgtcat gcgaattgct tcggcggtag
      181 agcactgaat ggactagggg ccttaccagg ttactgaatc caatcaaact ccgaatgccg
      241 aagacaaata catggcagtc agacagtggg ggctaagcct cattgtcgag agggaaagag
      301 cccagaccgc cagctaaggc ccctaaatcg atcctaagtg gtaaaggacg tgaagatgcc
      361 gagacagcca ggaggttggc ttagaagcag ccatccttta aagaaagcgt aacagctcac
      421 tggtcaagcg tctttgcacc gataattcaa cggggctcaa ggatcgtgcc gaagctgcgg
      481 atctcatggt cttcggatca tgatttggta ggagagcatt ctgttcggct gtgaagtccg
      541 attgaaaaga cggatggagc gtacagaaga gaccctgccg gcataagtag cgataaggga
      601 ggtgagaacc ctccccgccg aaagtctaag gtttcctgag caaggttaat ccgctcaggg
      661 ttagtcggtc cctaagtcga ggtcgaaagg cgtagacgat gggaaacagg ccaacattcc
      721 tgtaccagca ctggtcgtta tcacgatggg gtgacgcagt aagctatctc agccaaatcc
      781 tatggctatg gaaggtggaa ccttttaggc ggttcgtgca ggcaaatccg cacgggcatt
      841 aacgctgagg agggagtccg gagtcgtaag actcataagc aggcgatgcc acgctgccga
      901 gaaaaacctc taaggagaac ttgtggtgac cgtaccgcaa accgacacag gtagacgagg
      961 attgaatgtc caaaggcgct tgagagaata cacgttcagg aactcggcaa attaactccg
     1021 taacttcggg agaaggagtg cctccgcaag ggggccgcag tgaaatgcga agggcgactg
     1081 tttaacaaaa acacaggtct ctgctaagtc gaaaacgacg tataggggct gacacctgcc
     1141 cggtgccgga aggttaaagg gagcggttag ctggagcaat ccggcaaagc tgcgaactga
     1201 agccccggtg aacggcggcc gtaactataa cggtcctaag gtagcgaaat tccttgtcgg
     1261 gtaagttccg acctgcacga atggtgtaac gatccttcga ctgtcttaac gtgtaactca
     1321 gcgaatttgt ag
//
LOCUS       DATCGC010000056         1001 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_34057, whole genome shotgun sequence.
ACCESSION   DATCGC010000056 DATCGC010000000
VERSION     DATCGC010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1001
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34057"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            73..636
                     /locus_tag="VIJ87_00565"
     CDS             73..636
                     /locus_tag="VIJ87_00565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442974.1"
                     /translation="MKPGTNLLRFITPAALALTIALSPGIMPGQGADSEQVSDLLAQA
                     KRHAVLLEDDAASLDAFTRSKLHWESHSLKLQEMRDHVNQLGKVDKQLTELRPQGSHW
                     QQKAIDEIHPLLMEMASQLTRTINHLNDNPSKIRMRAYADYVHANYEIATKTAEMIAD
                     YLAYDKAMSLAESSEARLNLPDSKINN"
BASE COUNT          269 a          250 c          248 g          234 t
ORIGIN      
        1 cttcgactgg caatttaaat gctcgtactt gaagcgtgca ttgcgaaatg caatcacaaa
       61 gaaggaggaa cgatgaaacc gggaacgaac ctactacgat ttattacccc cgctgcgctg
      121 gctttgacaa ttgccttgag cccgggcatc atgccgggac aaggtgcaga ctcagagcag
      181 gtttcagacc ttcttgcgca ggcaaagaga cacgccgtct tgctagagga tgatgccgca
      241 tctcttgatg catttactcg ctcaaaattg cactgggagt cacattcctt gaaactccaa
      301 gaaatgcgag atcacgttaa tcagctggga aaggtagata agcagctcac agaacttcgc
      361 ccacaaggat ctcactggca acaaaaggca atagatgaga tccacccgct cttgatggaa
      421 atggcgagtc aacttacccg tacaatcaat catttgaacg acaatccatc caagattcgt
      481 atgcgagcat acgcggatta cgtccatgcc aactatgaga tcgctacgaa aactgcggag
      541 atgatcgcgg attatcttgc ttacgacaag gcaatgtcgc ttgcagaatc ttcagaggcg
      601 aggctcaatc tgcctgacag caagatcaat aattagggca tggtattgac tcgcaatgac
      661 gattgagatg acagctggtc gcctttttgg tggcggaaat tccctcccct gaacttattt
      721 cacggccacc tggccgtttc ccggagctgg cagcgtgttg ccctgcgcag ctctgggcta
      781 tgttgcacaa gactctcgtg cgtgccacat ctcacgccgt gtaacgacta ccaacagcag
      841 ctcctctacg aattggataa agcaggaatg tctgagttgg caggcaagta tcttcccgcg
      901 tcggatttcc agacggtaga taatcttctg ttggaactgt tgccggaatt ttatttcgcg
      961 tttcgatctg gaaaaacagg ggaaaacgtc aagactgggc a
//
LOCUS       DATCGC010000057         2096 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_755, whole genome shotgun sequence.
ACCESSION   DATCGC010000057 DATCGC010000000
VERSION     DATCGC010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_755"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..520)
                     /locus_tag="VIJ87_00570"
     CDS             complement(<1..520)
                     /locus_tag="VIJ87_00570"
                     /inference="COORDINATES: protein motif:HMM:NF012509.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442975.1"
                     /translation="MIIESSAPPRVDLAGGTIDIWPLYLFHPGATTVNFALTLHARCR
                     IETRDDGRIVLESRDRKVAFETDLSAIEDLLLEERLELISKLVHFFKPTTGFHLIADS
                     AAPAGAGLGGSSALAIACIGALNRLVGNRYDVRKFVTIAANVESTVIRVPAGFQDYYP
                     PLYGSVSSIHFRP"
     gene            complement(694..1428)
                     /locus_tag="VIJ87_00575"
     CDS             complement(694..1428)
                     /locus_tag="VIJ87_00575"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEY5442976.1"
                     /translation="MHSLDFLYELIRQYGVYAVFILVMVEGDITLLLAGVLAHSDFFY
                     PYSFARVLIWGTLGGCASDNLAYLAGRGFCETVREFRFYRAAQPRLERLTNKFGPLSI
                     FLSKYIYGLRWASCVFYGVGRMPYARFLLVSLGSCFLWVFILAGAGYFFSGAVMGLIG
                     DFQRLGKVLLVIVIVGIVGFYLTERFWLSKKVEQVNPERLQEFEHAATEKLQDLRQEF
                     HEHIPFKPQRRSEQKKVAGKSDGDGD"
     gene            complement(1508..1975)
                     /locus_tag="VIJ87_00580"
     CDS             complement(1508..1975)
                     /locus_tag="VIJ87_00580"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEY5442977.1"
                     /translation="MDIHSILLPTDFSECGNYALSYAASLARTFKASIICLNVIEPIV
                     PTVGYSGMAEPLPIADIAEQLEDSAERELPKLAECDECSGLNVEELVVHGEAASEIVR
                     VAKERSVDLIVIASHGRTGLGRILFGSTAEAVVRHAPCPVLVVKPPQLAEGEE"
BASE COUNT          571 a          531 c          529 g          465 t
ORIGIN      
        1 caggccggaa atgaatagac gaaactgagc catatagcgg tgggtaatag tcttgaaatc
       61 cagcagggac ccgaatcacc gttgattcaa cattcgctgc gatagtcaca aactttcgca
      121 cgtcataacg attgcccacg agacggttca aagcgccaat acaggcgatc gcgagggcag
      181 atgatccacc taaccctgct ccagccggcg cagcactgtc ggcgatcaaa tgaaatccgg
      241 ttgtgggttt aaagaaatga accagttttg agattagttc gagtcgttct tccaacaaca
      301 gatcttcgat tgccgataga tcagtttcaa aagcaacttt tcgatcgcgt gattcaagaa
      361 cgatccggcc gtcatcacgc gtttcgattc gacaacgcgc atgcaatgtc agagcgaagt
      421 tgacggtagt tgctcccgga tggaagagat aaaggggcca gatatcaatc gtgccacctg
      481 caaggtcgac acgtgggggt gctgaagatt ctatgatcat tgccgtaaga gttgaattgc
      541 tgagtccttt gttctgaatt ttgttcttgg ttctttgtgc tttgtctgtc gctgctaagc
      601 tctaacgaaa tgcggagcgt acaaagtacc aagaactaag cacaaagctc aaagatgcaa
      661 tcggccattg gcaatcggca atcggaaatg gcttcaatct ccgtcgccat cactcttgcc
      721 cgcaactttc ttttgttcgc tgcgccgctg aggcttgaag ggaatgtgtt cgtgaaattc
      781 ctggcggaga tcctgcagtt tctcagtggc agcgtgctca aattcctgga gacgttcagg
      841 gttcacttgc tcaactttct tcgataacca gaaacgctcg gtcagataga acccgactat
      901 gccgacaatg acaatgacca acaacacttt gccgagacgt tggaagtcgc cgatcaaacc
      961 catgaccgca ccgctgaaga agtagccggc tcccgccaaa atgaacaccc acaaaaagca
     1021 gctgcccagc gatacgagaa ggaatctggc atagggcatt cttccaacgc cataaaaaac
     1081 gcaagacgcc caacgaagac cgtagatgta tttggaaagg aaaattgaca gcgggccgaa
     1141 cttgtttgtg agtctttcga gtcggggttg agccgcgcgg tagaagcgaa actcgcggac
     1201 tgtttcacag aaaccccgac cagccaggta agccaggttg tcgctggcac atcctcctag
     1261 cgtcccccaa atcagcactc gcgcaaaact gtacggatag aagaagtcgc tatgcgccag
     1321 tactcccgcc agaagaaggg tgatgtctcc ctctaccatg acgagaataa aaaccgcgta
     1381 caccccgtat tgacgaatca gttcgtagag aaaatcaaga ctatgcatta attatctgag
     1441 taagaaagta aatgggtcag tcagtattac ggcggctgac agaataaact ggaggactct
     1501 ctgttgacta ctcttcgcct tctgctagtt gcggtggctt gacgaccagt acaggacatg
     1561 gcgcatgtcg cacgacagct tcggcagttg agccgaaaag aattcgcccc aggccagtgc
     1621 gtccgtggga agcaatgaca atcaggtcga cggagcgctc tttagccact cgaacaattt
     1681 ccgaagcagc ttcaccgtga acaaccagtt cctcaacatt caaaccggag cattcatcgc
     1741 attcggcgag cttcggcagt tcgcgttcgg ctgaatcctc gagctgttca gcgatatctg
     1801 caataggcag cggctctgcc atcccggagt agccaaccgt cggaacgata ggctcgatga
     1861 cgtttaagca gatgatcgaa gccttgaaag ttcgcgccag cgaagcagcg taggaaagag
     1921 catagtttcc acactcgctg aaatcggtgg gtaaaagtat tgagtgaata tccataatgg
     1981 aaaaacgtac ctggttttgt gcttaggtct ttgcctggtt ctccttagcg ccaagaaccg
     2041 ggacggcaac cttacaagca caagatcaaa gtactaagcc cgactgtggc cgaatt
//
LOCUS       DATCGC010000058         1941 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_400308, whole genome shotgun sequence.
ACCESSION   DATCGC010000058 DATCGC010000000
VERSION     DATCGC010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1941)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1941)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1941
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_400308"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1941
                     /locus_tag="VIJ87_00585"
     CDS             <1..>1941
                     /locus_tag="VIJ87_00585"
                     /inference="COORDINATES: protein motif:HMM:NF019350.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HEY5442978.1"
                     /translation="NNGLARLRVGNQPELTVAEGLASNLVLASFEDREGSLWIGTEAG
                     GLNLLRDKKFTTLTTRQGLASDLIKSVYQDKSGAVWIGTSGSGLSVLRDGKIKNFTTK
                     DGLVSNVVLSLYGDDKGTMWIGTPDGLNKFAGGTFETFTVAEGLSSDLIRSIYVDSEG
                     VVWVGTRNGLNRIKNGEFTIFTTHDGLPSDFIGAIFEDSNHTLWVGTRAGLSEFKAGK
                     FTNYTSKDGLSSEVITSLHEDSAHNIWIGTNDGGLNRLQNGRITSYTTRNGLLDNVIY
                     RILEDAQHNLWFSSPRGISKVGLSELNDFADGKLQYLNPTTYGTSDGMLTRECSGGGY
                     PAGWRGSDGKLWFSTIKGIAMIDPGNTQFNREVPPVAIEQIRIDDQPLTANGNVQFSP
                     ATTRLEFYYTALSFVAPDKVKFKYKLEGFDPDWIDAGTKRTASYTNLRPGTYTFRVIA
                     ANNDGVWNHEGAAFQFYLQPHFYQTYWFYALLILLLAFLVWQAYQLRVRRMKAQFDAV
                     LVERTRIAREIHDNLAQELLGISVQLEVVARTMPPGAEVAKSHLDRVRLLIRHGIAEA
                     RRYVWDLRSQALDNSDLPTALKETAQRLTAERNVEAQVQVGGVFRQLPRPVEDNLLRI
                     AQEAINNALAHANPEHVVVNLT"
BASE COUNT          486 a          439 c          542 g          474 t
ORIGIN      
        1 aaacaatggc ctggcgagat taagggttgg caatcagccg gagttgactg ttgctgaggg
       61 actagcgagc aatcttgtcc tggcctcgtt tgaagatcgc gaagggagct tatggatagg
      121 caccgaggct ggcggcctga atctgttacg cgacaaaaag tttactacgc ttacgactcg
      181 tcagggcctg gcaagtgatc tgatcaaatc tgtctaccag gacaagtctg gtgctgtttg
      241 gattggaact agtggctctg gattgagtgt cctgagggac ggaaagatta agaacttcac
      301 gacaaaagac ggtttagtga gcaacgtggt gctttcgttg tatggcgacg acaagggaac
      361 gatgtggatt ggcacgcctg atggtctgaa taagtttgcg ggcggaactt ttgaaacatt
      421 caccgtcgct gaaggtctct cgagtgatct cattcgctca atctatgtcg acagcgaggg
      481 tgttgtttgg gtcgggacgc gtaatggact gaatcgaatc aagaacggcg agtttacgat
      541 ctttactaca cacgacggtt tgccaagcga ttttatcgga gcgatctttg aagactccaa
      601 ccatactttg tgggtcggaa ctcgggcggg cctgagtgaa ttcaaggccg gaaagtttac
      661 caactacact tcgaaggacg gactgtcgag tgaagtgatt acttctcttc acgaagattc
      721 cgcgcataac atttggatcg gcacaaacga cggtggtcta aatcggcttc agaatggacg
      781 gataacttcg tatacaacgc ggaacggcct actggataac gtcatctata ggatcctcga
      841 agatgcgcaa cacaatcttt ggtttagttc accaagaggc atctcaaaag ttggtctcag
      901 cgagttgaat gattttgcag atggcaagct ccaatacctg aacccgacta cgtatggaac
      961 gtccgacgga atgctgacgc gtgaatgtag cggtggaggc tatccggctg gttggagagg
     1021 cagcgacggc aaactgtggt tctcgaccat caaaggcatt gcgatgattg acccagggaa
     1081 cacgcagttc aaccgtgaag ttccgccggt tgcgattgaa cagattcgaa ttgacgatca
     1141 accgttgacc gcgaacggca atgtgcaatt ttcacccgcg acaacgcggc tggagtttta
     1201 ttacaccgcc ttgagtttcg tagcgcccga caaagtaaag ttcaaataca agctggaagg
     1261 atttgatcca gattggattg atgctggaac caagcgaact gcgtcgtata caaatctccg
     1321 gcccggcacg tacacgtttc gagtgattgc ggcaaacaac gacggtgttt ggaaccatga
     1381 gggggcagcc tttcagttct atcttcaacc gcacttctat caaacgtact ggttctatgc
     1441 tcttctgata ttgttgcttg catttctggt ttggcaggcc taccagttac gcgtcagaag
     1501 aatgaaggcg cagtttgacg ccgtgctggt agaaagaact cgcatagcgc gagagattca
     1561 cgacaacctg gcgcaggagt tactcggtat ttcagttcaa ctcgaagtcg tcgcgcgtac
     1621 tatgccgcca ggtgccgaag tcgcgaagag tcatttggac cgggtgcgac tgttgattcg
     1681 gcatggaatt gccgaagcgc ggcgctacgt ttgggatttg cgatcacagg cgctcgataa
     1741 ctctgatttg ccaactgcat tgaaggaaac tgcacagcgg ttaacggcgg agcgtaacgt
     1801 cgaggctcaa gtacaggtcg gcggtgtttt cagacaatta cctcgtccgg ttgaagacaa
     1861 cttgttgcgt attgcccagg aagcgattaa caatgcttta gcccatgcaa atccggaaca
     1921 cgttgtcgtt aatctcactt t
//
LOCUS       DATCGC010000059         1423 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_300407, whole genome shotgun sequence.
ACCESSION   DATCGC010000059 DATCGC010000000
VERSION     DATCGC010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1423)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1423)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1423
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300407"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(29..481)
                     /locus_tag="VIJ87_00590"
     CDS             complement(29..481)
                     /locus_tag="VIJ87_00590"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY5442979.1"
                     /translation="MIKLASAGDAQTLTQIALDAKRHWGYPEHWIKHWESDLTISAEF
                     ITSNHVYVAEDEGEIRGFYALCLVDEKAELEHLWVRPSHIGTGIGKELFLDAMERAAK
                     LNVSEVELSADPNAAGFYKRMGASQVGEIDSEIDGEPRKIPRMKIDVR"
     gene            complement(500..1120)
                     /locus_tag="VIJ87_00595"
     CDS             complement(500..1120)
                     /locus_tag="VIJ87_00595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442980.1"
                     /translation="MKFVIVLALMLVPAVATRAQSVSPSPIVSPQLSVLKFSWNKERV
                     GWERDPFSGPVENFDEMRVRARNEKRISDAKKGGNSAEVDRAARDARSDDALISEIHR
                     NTPARYGFVYKTSVQNTGPKSIRTIDWDYVFFDVQTQAELGRRQFTSDETIGPGKSKE
                     LKFFIASPPTRTISVNALNKTERDNLGEAVVIVRIEYADGSIWQHP"
BASE COUNT          322 a          383 c          356 g          362 t
ORIGIN      
        1 ggatactgac tgaacgacaa actgaagttt atcggacatc aatcttcatc cggggaattt
       61 tgcgcggttc cccgtcaatc tcagagtcga tttcaccaac ctggctggcg cccattcgtt
      121 tgtagaagcc ggctgcgttc ggatcagccg ataattcaac ttcactaaca ttcaattttg
      181 ccgcgcgttc cattgcgtcg aggaaaagct cttttccaat tccggtacca atgtgggaag
      241 gtctcaccca caggtgctcc aactcggcct tctcatccac caggcacaac gcataaaacc
      301 ctcgaatctc gccctcgtct tctgcaacat aaacatgatt gctggtaata aactcagccg
      361 agatcgtaag gtccgactcc cagtgtttga tccaatgttc gggatagccc caatgacgtt
      421 ttgcgtcgag cgcgatctgg gtcagagttt gagcgtcgcc tgcagatgcc agctttatca
      481 taatcggatt gtagaagaat tacggatgtt gccagatcga accatcggca tactcgattc
      541 ggacgatcac tacggcttca cccaggttgt ctcgttcagt cttgttcaga gcattgacgc
      601 taatcgtcct ggttggtgga ctggcaataa agaacttgag ttcctttgat ttacccgggc
      661 caatcgtttc gtcactggtg aattgccgtc gaccgagttc agcctgagtt tgtacatcga
      721 agaaaacgta gtcccagtcg atagtcctga tcgattttgg tccggtgttt tgtacggacg
      781 ttttgtaaac aaagccataa cgcgctggag tgtttcgatg gatttcggaa attagagcat
      841 cgtcgctacg agcgtcgcgt gcggccctat cgacttcagc gctgttgcca cccttttttg
      901 catcggaaat tcgcttttcg tttcgcgccc gaacccgcat ctcgtcaaag ttttcaacgg
      961 ggccactaaa aggatcacgc tcccacccaa cgcgttcctt attccagctg aacttgagaa
     1021 ctgacagttg aggagacacg atcggagaag gagaaactga ttgcgccctg gtcgcaacgg
     1081 ctggcaccag catcaatgcg agcacgataa cgaacttcac ggttggctcc ttcctgtggt
     1141 tgaacggagc atactacacg gtttgaggtt agaaaaagtt ttcaggctgg gaaggacggt
     1201 cgcctctgtg gattgaacaa gctgggaagg ggcagcggaa actcggacgc ctcacaaatg
     1261 tgatcccgag cgtgccccgc tgagttccca ttcaaatcga cgaggggttc aaagtggatc
     1321 agcggcggcg cgctcggtgt cgcaagtgtc agccgtccaa ttttccgctt gccacccttc
     1381 ccagcttgtt cgattcacag cagcgctttc cccttccctg ctt
//
LOCUS       DATCGC010000060         1648 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_233838, whole genome shotgun sequence.
ACCESSION   DATCGC010000060 DATCGC010000000
VERSION     DATCGC010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1648)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1648)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1648
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_233838"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..832)
                     /locus_tag="VIJ87_00600"
     CDS             complement(<1..832)
                     /locus_tag="VIJ87_00600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442981.1"
                     /translation="MKQTIALLLVALTSIVAHSQNRQEPGKSIGSVTVQGNLIVMELN
                     EGAFGKANMFDLTRRTLRFTPEGTGYRAENLAFQWDADFGKEASEPQQSFTSFSFPYS
                     GKTWNSFSVGINGSISFGPPGNAAGGGGGQRGGGVSIERFAQLQDAARTLINTAPAIC
                     VFFKPRMSGKRYVKELADRVVITWDITEPYGNIQDFTWTPTVNRFQTVLHKDGTIEMS
                     YDQLAAKDAIIGLYPLVTGSSEKLVSTLTDDEQVDVPAHLDLKSVKVSIVDGLFLKVT
                     F"
     gene            959..1273
                     /locus_tag="VIJ87_00605"
     CDS             959..1273
                     /locus_tag="VIJ87_00605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442982.1"
                     /translation="MKPKVTMVWLIGFLEAYLETGKTFPVYKIMQNVNTVSRLVEKHE
                     RCSFRQSAINAATLKKLAPRRGTSYNVVAHSVNRTENLVSVRINQESRPPTLAVPHLR
                     NL"
     gene            1291..>1648
                     /locus_tag="VIJ87_00610"
     CDS             1291..>1648
                     /locus_tag="VIJ87_00610"
                     /inference="COORDINATES: protein motif:HMM:NF019334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEY5442983.1"
                     /translation="MQLTPGSRLGPYEIRHWIGAGGMGEVYYARDTRLGRYVGLKILL
                     PELTANEERLRRFEQEARATSALNHPNILTIFEIGHEKDVHFISTEFVEGVTLRLCMA
                     EEQLTLSTTLDIAIQIA"
BASE COUNT          423 a          422 c          402 g          401 t
ORIGIN      
        1 caaaagtgac cttcaagaaa agtccatcga caatcgagac tttgacactt ttgagatcga
       61 gatgagcggg aacatccacc tgctcgtcat cagtaagagt cgaaaccagc ttttcagatg
      121 agcccgttac caatgggtac agcccgataa ttgcgtcctt cgccgccaac tgatcgtacg
      181 acatctcaat cgttccatct ttgtgtagga cggtttggaa gcgattgact gttggcgtcc
      241 aggtgaagtc ctgaatattg ccgtacggtt cagtgatgtc ccaggtaatc acaacacgat
      301 cagccaactc tttcacatat cgcttgcctg acatgcgagg tttgaaaaag acgcagattg
      361 ccggtgccgt gttgatgagg gtacgcgcgg cgtcttgcaa ttgggcaaac ctttcgatgg
      421 aaactcctcc accacgttga ccaccgccac caccagccgc gttcccggga ggaccaaagc
      481 taattgagcc gttgattcct acggagaagg agttccaggt cttgcctgaa tacgggaatg
      541 aaaaactagt gaacgactgt tgtggctcgc tcgcttcttt gccaaaatcc gcatcccact
      601 gaaacgccag gttctcagct cgatagccag tgccttcagg agtgaatcgc agcgtacgcc
      661 gtgtgagatc gaacatgttg gctttaccga aagcgccttc gttgagctcc atcacgatca
      721 aattaccctg aacggtgacg gatccgatgg acttccccgg ttcctgtcga ttctggctat
      781 gagcaacaat ggaggtaaga gcgacgagta agagtgcgat cgtttgtttc atctgatgtc
      841 cttatgtgag tgaaccgact acgtcaaacc gcttatcgtt gcaggtttga atgattaccg
      901 cattgggacc acttaatgca acgcgcatca tcaatttaca ccgaaggttg ttatctgctt
      961 gaagccgaaa gtgacgatgg tttggttgat tggatttctt gaggcgtacc ttgaaacggg
     1021 aaaaactttt ccggtttaca aaataatgca gaacgtaaac acggtgagtc ggttggttga
     1081 gaaacatgaa cgatgctctt ttcgacaatc agcgatcaac gccgccactc tcaaaaagct
     1141 ggccccgagg cgtggaacct cttacaatgt cgttgctcat tccgtaaata gaaccgagaa
     1201 cctcgtatcg gttcggatta accaggaatc acgacctcct actctcgcgg ttccgcattt
     1261 gcgaaacctt tgacaatccc accgaacctt atgcagttaa ctccaggcag tcgacttggt
     1321 ccatatgaaa ttcgccactg gatcggcgca ggcggaatgg gggaagtgta ctacgctcga
     1381 gacacaaggc tcggtcgtta tgtcgggctc aaaatattac ttccggaatt aaccgccaat
     1441 gaggaacgct tacgacgttt tgaacaggaa gcccgcgcaa cctctgcgct taatcatccc
     1501 aacatcctca ctattttcga aatcggccac gaaaaagatg tccactttat aagcacggaa
     1561 ttcgttgagg gcgtcacgct tcgactgtgt atggccgagg agcagcttac gctcagcaca
     1621 acccttgaca ttgctataca gatcgctg
//
LOCUS       DATCGC010000061         1509 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_233849, whole genome shotgun sequence.
ACCESSION   DATCGC010000061 DATCGC010000000
VERSION     DATCGC010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1509
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_233849"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..201)
                     /locus_tag="VIJ87_00615"
     CDS             complement(<1..201)
                     /locus_tag="VIJ87_00615"
                     /inference="COORDINATES: protein motif:HMM:NF014896.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442984.1"
                     /translation="MSFSKRKPLEAHRNDCQYQIGGRSISDPYRWMEDDSTELRTWVL
                     AQHEYTMAQLSSLPVRENIRRRL"
     gene            700..>1509
                     /locus_tag="VIJ87_00620"
     CDS             700..>1509
                     /locus_tag="VIJ87_00620"
                     /inference="COORDINATES: protein motif:HMM:NF013586.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016805 - dipeptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HEY5442985.1"
                     /translation="MPRSKMRIDHQVPITSPEMFSSPYRDIPIDKDDPRGLEPLIPLE
                     SVGVAFESYYAKTDGKNPPFGRSIDGARPDIWLRKSLAEKLARVNQRLQPFEAEVFVL
                     DGHRTVACQQGLWDFFYARAKRLNPDGTSQEHRTYAMQYIVDPVDFDENDSRTWPAHT
                     NGGAVDLTLRDSETKELLNMGANFEEDIDANVGDYFERQLVAGLIDESDVRLQNRRLL
                     NWAMTEEGLLNETAKVFWHYDWGNQIYVRASRAFLHEPPKAAWYGYIAHPEE"
BASE COUNT          384 a          392 c          393 g          340 t
ORIGIN      
        1 caaacgccgc cggatgtttt cccgaaccgg aagagacgag agttgggcca tcgtgtactc
       61 gtgctgcgcg agtacccatg ttcgcaactc tgtagagtca tcttccatcc agcgataagg
      121 gtcgctgatc gagcgtccgc ctatctggta ctggcagtcg ttccgatgtg cctcaagtgg
      181 ttttcgtttc gagaatgaca ttactcaact gagcgaatac ccggatggaa agccaacggc
      241 tttccctcag gagttgaata gcaaagtcga aataccaccc acggcagtgg gtggatgctt
      301 caagtccaac ctacaagcgt gttgaaacaa aggccaatcc catcgacgga agtcggtgga
      361 tgggttcaag tccagcctag caaaacattc taacctcata tgctttttgt taggttcgcg
      421 gcaagctctt tcggtcaggg tagaacgtga accatccacc gactgccgtc ggtggtatga
      481 cctttcaaac tgtggtgctc ggttagcttg gacttgaacg atccacccac taccgtgggt
      541 gggattttga agtttctgtg gctaggcctc agcgagaaac agacaactat tagtttgcac
      601 gcagccaatg agaaacctag aatgaccgcc gtcacctcgt tattgtaatt tactcaaacc
      661 gagtggttat ccaccaactg ccccatcaat ggaggcctca tgccccgaag caagatgcgc
      721 attgatcatc aagtccccat cacctcgccc gaaatgtttt ccagcccgta cagggatatt
      781 ccgattgata aggatgaccc acgcggactc gagccgctga tccctttgga gtctgttggt
      841 gttgcgttcg aaagttacta cgcgaagaca gacggaaaga acccgccgtt tggtagatcg
      901 atcgacggcg ctcgaccaga catttggctg cggaaatcgc tggccgaaaa acttgctcgc
      961 gtcaaccagc gactccaacc gtttgaggca gaagtgttcg tgctcgatgg tcatcggaca
     1021 gtcgcgtgtc agcagggtct gtgggacttc ttttacgcaa gagccaaacg gctaaacccc
     1081 gacggcacct ctcaagaaca ccgcacctat gcgatgcagt acatagtcga tcctgtggac
     1141 ttcgatgaaa acgattccag gacctggccg gcgcatacaa atggtggtgc agttgatctg
     1201 acattgcgag attccgaaac caaagaactc ctcaacatgg gagcgaactt tgaagaggat
     1261 attgatgcga acgtcggtga ctattttgaa cgacaactag tagctgggct cattgacgaa
     1321 agtgatgtca gactacagaa ccggcgactg ttgaattggg ccatgactga agagggacta
     1381 cttaacgaaa cagcaaaggt cttctggcac tacgactggg gcaaccagat ttacgtgaga
     1441 gcaagtcgag ccttcctgca cgaacctcct aaagccgcct ggtatggtta cattgctcac
     1501 ccagaggag
//
LOCUS       DATCGC010000062         1715 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_300431, whole genome shotgun sequence.
ACCESSION   DATCGC010000062 DATCGC010000000
VERSION     DATCGC010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1715)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1715)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1715
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300431"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(134..1630)
                     /locus_tag="VIJ87_00625"
     CDS             complement(134..1630)
                     /locus_tag="VIJ87_00625"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HEY5442986.1"
                     /translation="MRNIKNQKFVIALMLVALVSSMAFGQGGMAPQAPSTKGTVVKGK
                     APVNKTVLRVKLPKAEEASLPNGLRVILLHDAKVPTFNMQIVVLTGGLADRADYHGLA
                     SFTAALLREGTTKRSSKEIAEQTDALGTTLAANSGLSSLTSTVTTSGLVENIDQTLDI
                     FADVVRNPSFPQSEVDKYRARTLSQLQFQRSIPQFLALEAFNKAIYGTHPAALVIPPV
                     DSLKKLSSKDLAEFHSTYYRPNNAILAVVGDVTMKDLMPKVQKAFGDWQKADIPAVTI
                     PQAPDPASSMIYLVDRPGSVQTVLQLGTLGIERTSPDYFAVLLADRVLGGGPSGRLFL
                     NLREDKGYTYGAYSNFGSSKYRGTWTASSEVRTEVTDGAMKEFKYELTRLGTEKVSVD
                     ELENAKRAIIGGFALSLEQPGSLLQNIITQKLYNLPADYWDTYPQKVSAITADDVQRV
                     AQKYIDMKHLQVVAVGDASKTREILSKYGTVQVYDAEGKQIGSPSDNR"
BASE COUNT          368 a          459 c          447 g          441 t
ORIGIN      
        1 caggcgagga cgcctgcggt cccagaagag cacgtccgat attccgattg gattactaaa
       61 gtggtcggtg ccaatgaaca aagcccaggg aattggatcc ctgggcttcg ttgttgtcgg
      121 tcttgacccc ggtctaccta ttgtccgatg gactaccgat ctgtttaccc tcggcgtcgt
      181 agacttgcac cgtcccgtac ttactcagga tctcgcgtgt ctttgaggcg tcgccaactg
      241 ccaccacttg aaggtgcttc atgtcgatgt acttttgtgc gactcgctgc acatcgtcag
      301 ccgtaattgc cgaaaccttc tgtggataag tatcccaata atcggcaggc aggttgtaga
      361 gcttctgcgt aatgatgttc tgcaacagcg agccaggctg ttcgagcgac aacgcaaagc
      421 ctccgataat cgctcgcttc gcattttcga gttcgtcgac tgagaccttc tcggttccca
      481 accgggttag ctcatacttg aattccttca tagcaccgtc agtaacttca gtcctgactt
      541 ctgaactggc agtccaggta ccacgatact ttgagctacc aaaattgcta taggcgccgt
      601 aggtgtaccc tttgtcctcg cgtaagttca ggaacaaacg tcctgatggt ccgccgccca
      661 atacacggtc cgccaacaac acggcaaagt aatccggact tgtacgttca atgccgagtg
      721 tacctagctg taaaaccgtc tggactgagc cagggcgatc caccaaatag atcattgagc
      781 ttgccgggtc cggcgcttga ggaatggtta ccgcggggat gtccgccttt tgccaatcgc
      841 caaatgcttt ttggaccttc ggcatcaaat ctttcatcgt tacgtcgcca acaactgcca
      901 ggattgcatt gttgggacgg taataggttg aatgaaactc agccagatcc ttactcgaaa
      961 gtttcttaag tgaatctacc ggaggaatca cgagggctgc gggatgggtt ccgtagattg
     1021 ctttgttgaa tgcttccagg gcaaggaact gcgggatcga tcgctgaaac tgaagttgac
     1081 tcagcgttcg cgccctgtat ttgtcgactt cggattgcgg gaacgaaggg ttccgaacta
     1141 cgtcggcaaa gatatccaac gtctgatcga tgttctcgac aagacctgaa gtcgtaacgg
     1201 tacttgtcaa cgacgaaaga cccgagttgg cagccagcgt cgttccgagc gcgtcggtct
     1261 gttctgcgat ttctttgctg gaacgcttcg ttgtgccttc gcgtaataag gcggcagtga
     1321 aacttgctaa gccgtggtag tccgctcgat cagccaggcc gccagtcaag acgacgatct
     1381 gcatgttgaa agtgggcacc ttggcgtcgt gaagcaagat cacgcgcaga ccattgggca
     1441 acgacgcttc ctcggccttc ggtaacttca ctcgcaagac cgtcttgtta accggcgctt
     1501 tgccttttac tactgtgccc tttgtgctgg gagcctgcgg tgccatgcct ccttggccga
     1561 aagccatcga cgacaccagc gcaaccagca tcagcgcaat tacaaacttt tggttcttga
     1621 tatttctcat tttcttgcct ccttactggc ctgatgtccc ggttgtgggc cgtgctttgg
     1681 ctttgggaat agtaacgacg acggttcgat ttgta
//
LOCUS       DATCGC010000063         1079 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_466963, whole genome shotgun sequence.
ACCESSION   DATCGC010000063 DATCGC010000000
VERSION     DATCGC010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1079)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1079)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1079
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_466963"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..555)
                     /locus_tag="VIJ87_00630"
     CDS             complement(<1..555)
                     /locus_tag="VIJ87_00630"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HEY5442987.1"
                     /translation="MTFVLLLLVLFLQLLPLLFTQQPKSGKSQTVAVQVADEMSLLES
                     GHATKLRAAPRNSELKIVSYNIRWRSGDDLKELIRLLREDVEIGSPSVVALQEVDRQK
                     KRSGKTNTAKQLAEELGLYYAWAAPPSVKGVEEEETGVALLSPYPLFDVRRIVLPHEG
                     PGHRRRVALGACVKLDNVDLRIYSA"
     gene            complement(564..>1079)
                     /locus_tag="VIJ87_00635"
     CDS             complement(564..>1079)
                     /locus_tag="VIJ87_00635"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY5442988.1"
                     /translation="SRTKPLRIFGPHGLVALLNAINDANNYRLLTQPFAIELREVGSD
                     TSFEILPGISATTMKTPHTKESLALHLKEQTPETFVYTSDTGFTEELFSFGKQVDLLL
                     MECSFRRNKPIHTHLELADAMQVAVECAPKKLVLAHLYPEWDGLDIAGLGKSFWPGCI
                     VEAIDGLVIKV"
BASE COUNT          263 a          272 c          259 g          285 t
ORIGIN      
        1 cgccgaataa attcgcaggt cgacgttgtc gagcttcacg caggcgccaa gagctactcg
       61 acgccggtgt cctggtccct catgcggtag aacgattcga cgaacatcaa acagcgggta
      121 gggactcaag agcgctactc cagtttcttc ttcctcaacg cctttgaccg atggcggcgc
      181 cgcccaggcg taataaagtc ccaattcctc ggccaactgc tttgcggtgt tcgttttccc
      241 actacgtttc ttttgtcgat cgacttcctg tagggcaaca actgaagggc ttcctatctc
      301 aacatcctca cgcagcaacc taatcagttc tttgagatcg tcgccgctcc gccagcgaat
      361 gttgtaggaa acgatcttca actcggagtt tcgcggtgca gctcggagtt ttgttgcgtg
      421 gccagactct aatagcgaca tttcgtcagc gacttgaaca gcgactgttt gagatttgcc
      481 agactttggt tgctgtgtga aaagcagcgg tagtaactgg agaaaaagaa ctaacagaag
      541 tagtacgaaa gtcatatttc cctctagacc ttgattacca aaccgtcaat tgcttcgacg
      601 atacaacctg gccaaaacga ttttcccagg ccggcaatat ctagtccatc ccattcggga
      661 tagagatgcg ccagtacgag tttctttggc gcgcactcaa cagcgacctg cattgcatct
      721 gcgagttcca ggtgtgtgtg aataggtttg tttctcctga aagaacattc catcaaaagc
      781 aagtcaacct gtttcccaaa gctaaaaagt tcctctgtaa atcctgtgtc acttgtgtaa
      841 acaaatgtct cgggcgtttg ttctttcaaa tgaagtgcca ggctctcctt ggtgtgtggc
      901 gttttcattg tggtggctga gatgcccggc agaatttcaa aggaagtatc cgaacctact
      961 tctcttaact caatcgcgaa gggctgagtt aacaaacgat aattgttcgc gtcgttaatt
     1021 gcattgagca gagcgaccag gccgtgaggg ccaaaaatac gcagaggttt tgttctact
//
LOCUS       DATCGC010000064         1752 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_367135, whole genome shotgun sequence.
ACCESSION   DATCGC010000064 DATCGC010000000
VERSION     DATCGC010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1752)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1752)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1752
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_367135"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..464)
                     /locus_tag="VIJ87_00640"
     CDS             complement(<1..464)
                     /locus_tag="VIJ87_00640"
                     /inference="COORDINATES: protein motif:HMM:NF020039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HEY5442989.1"
                     /translation="MYPGNSLRNTLLRVTILASLLTPFAVWLLSQPPHSLAQSTSVLN
                     FESPHVHPLALTPDGTRLLAVNSPNGTLSVFHLSSGAPKLIAEIPVGLEPVSVALRNN
                     NEAWVANWLSDSISVVDLATGSVVRTVDVGDEPTDIIFAGSTREMAFVCVSGG"
     gene            834..>1752
                     /locus_tag="VIJ87_00645"
     CDS             834..>1752
                     /locus_tag="VIJ87_00645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442990.1"
                     /translation="MRFVLATLIIAIAAAATFGQSPPTLRIVTESPNLPSELFYGDIK
                     VKPLRLRPGTNTPITINDPDFFVSQQYVDFLSRFPDQSGFNFWNGEITGCGANAACIE
                     LKRINVSGAFFLSIEFRETGYLVYKMYEAGFGNLAGKPVPVRRENFMPDTRTIGNGVV
                     VGATGWEGILNANKNAFALAFVQRPAFQTAFPAGMTAQAFVDQLDTNAGNPLSSSDKS
                     NLVAILGATPDDATKRSQVLRQVAENSNLDSRDFNKAFVLMQYFGYLRRNPDEGNDTN
                     FDGYNFWLGKLNQFNGNFVQAEMVKAFIVS"
BASE COUNT          440 a          451 c          451 g          410 t
ORIGIN      
        1 ccaccggaga cgcaaacaaa agccatctcg cgtgtggaac cggcaaagat aatgtcggtt
       61 ggttcatcac caacgtcgac ggtgcgaacc acgctgcctg ttgccaggtc aaccacacta
      121 atggaatctg acagccagtt ggcaacccag gcctcgttgt tattcctcaa agcaacgcta
      181 actggttcca aacccaccgg aatttcggca atcaattttg gcgcgccgct cgaaagatga
      241 aacaccgaaa gggttccgtt tggagaattg accgccaaca gacgagtgcc atctggtgtt
      301 agggcaagag gatggacatg cgggctttca aagttcagga cgctcgtgct ttgagctaat
      361 gaatgtggcg gctgactcag caaccacacg gcaaacggcg ttagtaagga agcaagtatc
      421 gtcaccctga ggagggtatt ccgcaaggaa ttgccggggt acatcgcaac tactccttgg
      481 ttaagcctga atttggaatc gacacgcccg cagcggataa gttgggagac gcgcggatga
      541 agaaatctgc acccttagta catggagttt gggactgtgt caatgccatt tttgtacggc
      601 actttgttct atttactatc cagagagggc gttctttcct ggttgaccga gacttagacg
      661 cagcaggagt aaaattggcc aaaatattcg aataaaacgt cgttgacact ggtgtgatga
      721 gcgggctaaa ctccaaaagt gccctcgtgg atgtcttaaa tgcagccgcg atcaaattag
      781 gaaggccgcc tcactctcgg gtattctttc cgtagtctgc aaggagctac aagatgagat
      841 tcgttttagc aacgctaatt atcgcgatcg ctgctgctgc cacattcggc cagtcgccgc
      901 cgacccttcg tattgtgacg gagagtccga accttccttc cgagctgttt tacggagaca
      961 tcaaggttaa gccgctgcgc cttcgaccgg gcaccaacac tccaatcacc atcaacgatc
     1021 ccgacttctt cgtcagccaa cagtacgtcg acttcctcag ccgtttccca gaccagagtg
     1081 gattcaactt ctggaatggt gaaatcaccg gttgcggagc aaatgccgcc tgcattgagc
     1141 tcaagcgcat caacgtatcc ggagcatttt tcttgtcgat tgaatttaga gaaaccggct
     1201 atttggttta caagatgtac gaggccggct tcggtaatct tgctggcaaa cccgttcccg
     1261 ttcgtcgtga aaacttcatg cctgacacgc gaacgattgg taacggcgtg gttgttggag
     1321 caacaggttg ggaaggcatc cttaacgcaa acaagaatgc tttcgcgttg gcttttgtgc
     1381 agcgtccggc tttccagact gcgtttccag caggcatgac agcccaggca tttgtcgacc
     1441 agctcgacac gaatgctgga aatcctttgt catccagtga taaatctaat ctcgtggcaa
     1501 ttcttggcgc aactccagac gacgccacga agcgctcgca agtgcttcgg caagttgccg
     1561 agaactcaaa tctggatagt cgcgacttca acaaagcatt tgtgctgatg cagtatttcg
     1621 gctacctgcg aaggaaccca gacgaaggta acgacaccaa cttcgatggc tacaacttct
     1681 ggctgggcaa actgaatcag ttcaacggaa acttcgtgca ggccgagatg gttaaggctt
     1741 tcatcgtgtc ag
//
LOCUS       DATCGC010000065         1647 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_367156, whole genome shotgun sequence.
ACCESSION   DATCGC010000065 DATCGC010000000
VERSION     DATCGC010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1647)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1647)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1647
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_367156"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1647)
                     /locus_tag="VIJ87_00650"
     CDS             complement(<1..>1647)
                     /locus_tag="VIJ87_00650"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5442991.1"
                     /translation="DRLVGIYTSDYSSGAYGGSSFPDFVDLRKQASAFNDLAAYDGTS
                     LNLSGVATPERLRVGLVTSNYFQVLGVGPHLGRTLRAEDDAAGAPRTVVLSHAFWQTH
                     FGSDASIVGRALTLGDKPYTVVGVMAESFRGLRVGSLPDVWLRMEEDQDEGSRGNRGI
                     GITGRLRDEASLKQAQTEVSAIANRLAQSYPETNLGTLAAPKAPRPMVAVTEERITPE
                     AKQNVRAVTTLLFVVVGLVLLIACANVANLLLARASSRRREIAIRLALGASRWRLIRQ
                     LLLESILLALVGGVAALIVTFWTAGLIPKFFPANEANGLDLTVDWRVLTFTLFVSLLT
                     GVLFGLAPALQATKPALVATLKDDKGSSATRLTRFGLRGLLVTAQIALSLLLLISAGL
                     FLRSLRNAVVYDPGFDNHNLLFASLATGQKLSKPQLAAFYDELSANLKAEPGVRSVGL
                     SGIVPLSGGERRNILIEGYQPRPNEDTELNTNVVGVNYFDAMGIPLVQGREFNSGDRE
                     GAPGVVMVNQEFAERYFPGDKATGKRVRTDSEGPYLEIVGV"
BASE COUNT          408 a          459 c          432 g          348 t
ORIGIN      
        1 acaccgacga tctcaaggta ggggccttcc gaatccgtgc gaactcgttt cccggtagcc
       61 ttgtcgcctg gaaaataccg ttcagcgaat tcttgattga ccatgacgac tccaggtgca
      121 ccttcccgat cacctgaatt gaactcacga ccctgaacaa gcggaattcc catcgcgtcg
      181 aagtagttca ccccgacaac atttgtattc agctcggtgt cttcattggg acgcggttga
      241 tagccttcta tgaggatatt gcgacgttca ccaccgctga gtgggacgat gccgctcaaa
      301 cctacagagc gcacccctgg ttcagccttt agatttgctg acaactcatc atagaaagcc
      361 gcgagctgtg gctttgagag tttttgtccg gttgcgagtg aagcgaacag gagattgtga
      421 ttatcaaacc ccgggtcgta gacgaccgca tttctcaggc tacgaagaaa cagacccgca
      481 ctaattagga gcaacaacga caacgcgatt tgtgcggtaa ctagtaagcc gcgaagtcca
      541 aagcgagtga gtcgtgttgc agagctaccc ttgtcgtctt ttagagtcgc gaccagagcg
      601 ggctttgtgg cctgaagcgc gggagcgagt ccgaacaaca cacccgtgag gagtgaaaca
      661 aacagggtaa acgtgagtac gcgccagtct accgtaaggt cgagaccgtt tgcttcgttt
      721 gccggaaaga attttggaat caggccagca gtccaaaacg tcacgattaa tgctgcaacg
      781 ccgccaacca acgcgagcag aatgctctcc agtaacaact gacgaatcaa tctccatcgg
      841 ctcgcaccta acgccagccg aatggctatc tcacgtcgac gagacgaagc acgagcaagc
      901 aaaagattcg cgacgtttgc gcacgcgatt agcaagacaa gtccgacgac aacaaacaac
      961 aacgtggtga ctgctcgaac attttgcttg gcttctggag tgatcctttc ttcagtaacg
     1021 gcgaccattg gtcgcggcgc tttcggggcc gcaagggtgc ccaggttggt ttccggatac
     1081 gactgcgcaa gacggttagc aatcgcgcta acttcggtct gagcctgctt gagtgaagct
     1141 tcgtcacgca gcctgccggt aattccgatt ccgcgattgc ctcgcgaccc ctcgtcttga
     1201 tcttcctcca tgcgaagcca gacatctggt agtgaaccga ctcttagtcc gcgaaaactt
     1261 tctgccataa cgccaacaac tgtgtaaggc ttatcgccga gggtcagagc acgaccaaca
     1321 atcgatgcat cgcttccaaa atgcgtctgc cagaaagcat gactgaggac gacagtccgc
     1381 ggcgcgcctg ccgcatcgtc ttctgcgcgg agtgttcggc ccaggtgagg accgacacca
     1441 agaacctgga aatagttcga cgtaaccagg cccactctga gtctttccgg tgtagcaact
     1501 cctgacaaat tcagcgaagt gccgtcgtaa gcagcgagat cgttaaaagc ggatgcttgc
     1561 ttgcgaaggt cgacgaagtc cggaaaagac gaaccaccgt atgctccgct gctgtagtcg
     1621 ctggtgtaga tgcccaccaa acgatcc
//
LOCUS       DATCGC010000066         1185 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_34246, whole genome shotgun sequence.
ACCESSION   DATCGC010000066 DATCGC010000000
VERSION     DATCGC010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1185)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1185)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1185
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34246"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            174..1001
                     /locus_tag="VIJ87_00655"
     CDS             174..1001
                     /locus_tag="VIJ87_00655"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005743 - mitochondrial inner membrane
                     [Evidence IEA];
                     GO_component: GO:0035632 - mitochondrial prohibitin
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prohibitin family protein"
                     /protein_id="HEY5442992.1"
                     /translation="MIAGLLLTTACGTTIQPGQRGLFWRPFSEGLSNQPLKDGFYWAA
                     PWNDVYRYDVRWQSHTEDIDALSADDLQVSIKAAIILRPISEELYFLNQEVGPDYYTR
                     IVKPQFMAAVRSVVSGYNMVTVPERSTEIASKVRAVVVENLKGRHLEVQNVALSDVDF
                     PQIVLRAIEQKQAKEQEKEQKEFELTIALKDAEIARSRAKGEGDAIRIRAEGEAEGLR
                     IRAIGQAQAQETITKTLTPSYLQYKLYDSPNSKLVILPEHMKTPVIINSGESSMSGR"
BASE COUNT          284 a          298 c          337 g          266 t
ORIGIN      
        1 gcagttctac gaggaagagg cacgcgaaca ggagcgcctt gctgatctgc acctagaact
       61 gggcaggggt cggtctcccc atcagccggc acaaaaatga gttcattcat ctgccacgct
      121 tgaagtggcc gaaccgggag gtagctatga cacgaggaat cttgacgaat cttgtgatcg
      181 caggactgct gctgaccacc gcctgtggca ccacgatcca accgggccaa cgggggttgt
      241 tctggcgtcc attttcggaa ggactgtcta accaaccact caaggatgga ttttactggg
      301 ctgcgccctg gaatgacgtc taccgctatg atgttcggtg gcagagccac acagaggata
      361 ttgatgcatt gagcgcggat gatctccagg tttccattaa ggccgccatc attcttcggc
      421 ctatttcgga agagctgtat tttctgaatc aagaggtggg acctgattac tatacccgga
      481 tcgtcaaacc gcagtttatg gcagcagtgc gcagtgtggt ttccggctat aacatggtga
      541 cggtgccgga aaggagcact gaaattgcga gcaaggtccg tgctgtcgtg gtcgaaaatc
      601 tcaaaggccg tcacttggag gtccagaatg tcgctttgtc agatgtcgat tttcctcaaa
      661 ttgtcttgcg agcgattgag cagaaacagg caaaagaaca ggaaaaggaa caaaaagagt
      721 ttgagttgac catcgccctc aaggatgctg agatcgctcg ctcacgggcg aaaggcgagg
      781 gggatgcgat caggattcgg gccgaaggtg aggcagaggg acttcgtatc cgggctatcg
      841 gacaggccca ggcccaggag accattacaa agactctgac accgtcctat ctacagtata
      901 aattgtatga cagcccgaac tccaagctgg tcatcttacc ggaacacatg aagacacctg
      961 tcatcatcaa ttccggtgag tcgtccatgt caggccgttg agaccccgtt cacgaaggtc
     1021 cggagagtca actcaggttg gtcgatggta ccgctcgcaa gtagttggtc taaagtgatg
     1081 attggtcacc tgccaccctg tggcaaacgt ttccgccttc tgtgcggcaa tcaaacgatc
     1141 gccatgtcgc acggactggc ccgtttcctg ttgttggttt gcctg
//
LOCUS       DATCGC010000067         1835 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_900, whole genome shotgun sequence.
ACCESSION   DATCGC010000067 DATCGC010000000
VERSION     DATCGC010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1835)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1835)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1835
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_900"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(174..425)
                     /locus_tag="VIJ87_00660"
     CDS             complement(174..425)
                     /locus_tag="VIJ87_00660"
                     /inference="COORDINATES: protein motif:HMM:NF016231.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF465 domain-containing protein"
                     /protein_id="HEY5442993.1"
                     /translation="MTEMDIATTDTLREELINRDPEFRELAREHHKYEERLSELSSLA
                     YPSDEEQLEETTLKKKKLALKDQMYSIMVQYQKVHSLSH"
     gene            complement(545..1048)
                     /gene="rimI"
                     /locus_tag="VIJ87_00665"
     CDS             complement(545..1048)
                     /gene="rimI"
                     /locus_tag="VIJ87_00665"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: protein motif:HMM:TIGR01575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008999 -
                     peptide-alanine-alpha-N-acetyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HEY5442994.1"
                     /translation="MSIVEENVTAKTGEILIGRMSEHDLLEVVEIEEQSGLSRWGWAA
                     YYSELQSGNRNLMLIAVPTKSPLIEHRRIAGYIVARETAGELHINNVAVREAYRRRGI
                     GIGLLGRVVSEARKLNVTTAFLEVRSGNIAAQALYERCGFKAIARRANYYSDPREDAV
                     VMSLILK"
     gene            complement(1048..1785)
                     /gene="tsaB"
                     /locus_tag="VIJ87_00670"
     CDS             complement(1048..1785)
                     /gene="tsaB"
                     /locus_tag="VIJ87_00670"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: protein motif:HMM:TIGR03725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HEY5442995.1"
                     /translation="MTVDPLILSVETATLAGSICISRARKVLGSDCGDATTSHSNTLL
                     ADIDRLLVKLDLTVRDVDVFAVASGPGSFTGLRIGLATVKALAATLNRNCLGIPTLEA
                     IAHSAGKSEKTVALLPAGRGELFAQMFSMSVEGVVQALDEPTHLSPSRMVERYFQMDG
                     ICWTGEGARVHSNLIIEAAERGGHEIIATSSDSSSPKSWRFAEPALNLAEHVALLATM
                     RLTTAADLSANALRAIYVRPSDAELKF"
BASE COUNT          486 a          501 c          381 g          467 t
ORIGIN      
        1 ccaaatgcac ctgccacaat agccagcagc aaaggcacta gaatgaacgg aatgctttct
       61 cgaacaatgc tcaaaacgaa tctacgatcg attgggtcct tgcaaaaagg ggacgtgtgt
      121 tgattccacg tccccaaaaa cttccggcat ttgagatact gcctcagccc gaactaatga
      181 ctcaaactgt gtactttctg atattgaacc ataattgaat acatctgatc tttgagagct
      241 aatttctttt tcttgagcgt agtttcctct aattgttcct catcacttgg ataggccagc
      301 gatgagagtt cactaagacg ttcttcgtat ttatgatgtt ccctggctag ttctctaaat
      361 tctggatccc gatttatcaa ctcttccctc aaagtatccg tggttgcaat gtccatttcg
      421 gtcatgtctc ctttcagacg atgaagtggc gggacgattt ggaggcgaaa gcttggcagc
      481 cttcctggga tttgttcgca cgcaaaaatg ttagcccaac atctttacca aatcaagctg
      541 gcatttactt caaaatcaga ctcatcacaa ccgcatcttc cctcggatca gaatagtagt
      601 ttgctcgccg cgcaattgcc ttgaaaccgc agcgctcata gagcgcctga gctgcgatgt
      661 ttccgctccg aacctctaaa aatgcagtcg ttacattgag tttacgagcc tcagaaacta
      721 cacgtccaag caatcctatt ccaattcctc gacgacgata cgcctcacgc actgcgacgt
      781 tattaatgtg gagttctccg gccgtttccc ttgcgacgat gtaaccggca attcttcggt
      841 gctcaattag cggcgatttt gttggaaccg caatcagcat taggttgcga tttccgcttt
      901 gtaactcaga gtagtaagca gcccaacccc atcgactcaa ccccgactgc tcctcgattt
      961 caacaacctc caggagatca tgttctgaca ttcgaccgat taaaatttca ccagtcttcg
     1021 cagtcacatt ttcttcgacg atagacatta gaactttaac tctgcatcag aaggtcgaac
     1081 atagatggct ctcaacgcgt tggcgctgag gtcagcagcc gtggtcaacc gcatggtcgc
     1141 caataatgca acgtgctcgg ccaaattcaa agctggttcg gcaaaccgcc aggactttgg
     1201 tgaagaactg tcactcgacg tggcaattat ttcgtgccct cctctttcgg ctgcttcaat
     1261 aatcaagttt gaatgaacac gtgcgccttc acctgtccaa cagatcccgt ccatctggaa
     1321 gtatcgttca accatcctcg aaggcgatag atgcgttggc tcatccaagg cctggaccac
     1381 accttcgacg gacatagaaa acatttgagc aaataattct ccgcgtccgg ccggcaacaa
     1441 ggcgacagtc ttttcagact taccagctga atgcgcgatg gcttcaagcg ttgggatacc
     1501 caggcaatta cgatttagcg tggccgctaa tgctttgacg gtcgcaagac caattcgaag
     1561 tccagtaaaa cttcctggcc ctgaagccac tgcaaaaacg tccacgtcac gaactgtaag
     1621 atcaagcttg accagcaacc gatcaatatc agccagtagc gtgttcgaat gggaagtcgt
     1681 cgcatcccca caatcacttc ccaaaacttt tcgcgcccga gaaatacaaa tactgcccgc
     1741 gagggtagcc gtctcaacac ttagaatcaa aggatccacg gtcactactt catctcttcg
     1801 atcgaaaagc tatccagcca tataacgcca aaaac
//
LOCUS       DATCGC010000068         2204 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_929, whole genome shotgun sequence.
ACCESSION   DATCGC010000068 DATCGC010000000
VERSION     DATCGC010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2204
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_929"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..633
                     /locus_tag="VIJ87_00675"
     CDS             <1..633
                     /locus_tag="VIJ87_00675"
                     /inference="COORDINATES: protein motif:HMM:NF014680.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HEY5442996.1"
                     /translation="DEEIRAARLKDHARLVRTHVTMLSRKSYWESVQPTPEFVLLFLP
                     GETFYSAALENDPKLIEDGISQRVIIATPTTLIALLKAVSYGWRQEQMADNAQEISKL
                     GKDLYDRLRVFTNHFSDIGKNLDRALESYNRGVGSLEGRVLRTARKLKETGAIAGEDI
                     ESPEPIDKATRVLALDEGGLFPDLVAEPEELDEPDEELPLLRSQTAGTDS"
     gene            775..>2204
                     /locus_tag="VIJ87_00680"
     CDS             775..>2204
                     /locus_tag="VIJ87_00680"
                     /inference="COORDINATES: protein motif:HMM:NF045064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442997.1"
                     /translation="MNQILLGPLLGNNRANLIERCAQLVAANQSHKFLYLAASHPLLE
                     VVTEGILDGTKNRGVWGELPVYLFRGFVRRVLMSAVDSEGKGLTPRLPIDREELPLKR
                     SLISQILARLKEQGKLKAIAPLAGREGCVNTFATLIGEIQRAAKTPDEVSAIIATRSE
                     DFPPRSDSTISQIEFDKEVALIYSTYCGLLQQHSLTENDADQVRALAVLRGEVDNARV
                     QLPWLNDVELLILDGFFDFTPIQGEILRELIPRVPETLVNLNYDPYNPEIFAPFRETV
                     DQLGGISKFETKQTTEALKTAGALSLLRTNLFNPLLSDNLQLVVDSPLDAQDSNTQPV
                     ENSLTDDVDKLKFIEHPLSDKLQLVVDSPDQTAQDAEHTDDSLNSDDDKLKHIGQSEI
                     RYFECGDRDTEIRMIAKEVKRLVLLENYKLTDIALVVRQRDAYSKTIARVMREESVPC
                     KLESRVDVVDVPATRAALKLLELLEQP"
BASE COUNT          552 a          607 c          534 g          511 t
ORIGIN      
        1 gatgaagaga ttcgggcagc caggctaaaa gaccacgcac gcctcgttcg tacgcatgtg
       61 acgatgctca gtcgaaaatc ttattgggag tcagttcaac cgacccccga atttgttctc
      121 ttattcctgc ccggcgagac gttctacagc gcagcgctag aaaacgatcc gaagttgatc
      181 gaagacggga taagtcaacg tgtaatcatc gccaccccca caactctgat cgcgttgtta
      241 aaggcagtct cctacggttg gcgccaggaa cagatggccg acaacgctca ggagatcagt
      301 aagctcggga aggatctcta cgatcgactc cgcgttttca caaatcattt ttcagacatt
      361 ggaaagaatc tggatcgcgc cctcgagtct tacaaccgcg gggttggttc tctcgaagga
      421 cgagtattga gaactgctcg caagctcaag gagaccgggg ccattgctgg cgaagacatc
      481 gagtccccag aacccattga taaagcaacg cgggtacttg cactcgatga aggtggcctg
      541 tttcccgatc tcgttgctga acctgaagag ctcgacgaac ctgacgaaga attaccgttg
      601 ctgcgatcac aaactgcagg aaccgatagt taactagtgt ccgatatgct ttagcttgtc
      661 gctgtccgga gatagtgtct tttttctgat cggcgtttat ctgtgcttat ctgtggccta
      721 caactgttcc acgtcaacga caagctaaag cttatcggac attagcaatt ggcaatgaat
      781 caaatcctcc tcggaccgct tctcgggaac aatcgagcaa acctcatcga gcgctgcgct
      841 caactcgtcg ccgctaacca gtctcacaag tttctctacc tcgccgcgtc tcatccactc
      901 ctcgaagtag ttacggaagg aatcctggat ggaactaaga atcgtggtgt ttggggtgaa
      961 cttcctgtct atctgtttcg cgggtttgta cgacgcgtgt tgatgtcagc agtcgatagc
     1021 gaaggaaagg ggttaacgcc gcgtttgccg atcgatcgtg aagagcttcc gctcaagcgc
     1081 agtttgattt cgcagatcct cgctcggcta aaggaacaag gaaaactcaa agccattgct
     1141 cctctcgcag gacgcgaagg gtgtgtgaac acctttgcaa cgttgattgg tgagattcag
     1201 cgagcagcca aaacgcctga tgaagtctcg gcaatcatcg ccacccgcag tgaagacttt
     1261 ccgccacgat ctgattcgac aatctcccaa atcgaattcg acaaagaggt cgcgcttatc
     1321 tactcgacct actgcggact tcttcagcag cacagcctga cggaaaacga tgccgatcaa
     1381 gtgcgcgcgc ttgccgtgct acgcggtgaa gtggataacg cgcgcgtcca actgccgtgg
     1441 ctaaatgacg ttgagcttct cattctggat ggcttctttg acttcacacc aattcagggt
     1501 gagattttgc gagagcttat tccgagggtc cccgaaacgc tcgttaacct gaattacgac
     1561 ccctacaatc cggagatttt cgcgccgttc cgcgagaccg tcgatcaact cggaggtatt
     1621 tcaaaattcg aaacgaaaca aactaccgag gccctgaaga ccgccggcgc cctctcattg
     1681 ctgcggacaa atctgttcaa ccctctgttg tccgataacc ttcagcttgt cgttgactct
     1741 cctttggacg ctcaagattc aaacacccaa ccagtcgaga actcgcttac tgatgacgtc
     1801 gacaaactaa agtttatcga acatccgttg tccgataagc ttcagcttgt cgttgactcc
     1861 cccgaccaaa ctgcccaaga cgctgaacac actgacgatt cgctcaatag cgacgacgac
     1921 aagctaaagc atatcggaca atccgagatc cggtacttcg aatgtggcga tcgcgatact
     1981 gaaatccgca tgatcgccaa ggaagtaaaa cgcctcgttc tactcgagaa ctacaagctt
     2041 accgacatcg cactcgtcgt tcgccaacgc gatgcttact caaaaacaat cgcccgcgtg
     2101 atgcgcgagg agtccgttcc ttgcaaactc gaatcgcgag ttgacgtagt cgatgttcct
     2161 gcaactcgtg ctgcactgaa gctgcttgaa ttgctcgaac aacc
//
LOCUS       DATCGC010000069         1501 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_200820, whole genome shotgun sequence.
ACCESSION   DATCGC010000069 DATCGC010000000
VERSION     DATCGC010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1501)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1501)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1501
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200820"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..429)
                     /locus_tag="VIJ87_00685"
     CDS             complement(<1..429)
                     /locus_tag="VIJ87_00685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5442998.1"
                     /translation="MKIFLSLALLLLFLPQLSAQTPSTSALWQVNSFDISVNVQQAER
                     ALNVTATLSATNIGGAAGRTFTVKLNSKAKVSSVSVNGAAATFRPGTEPRGDLFKAEV
                     SLPNAANPGANATLVVNYTLPVESNSGLAAISPVGTAFLPL"
     gene            complement(478..1317)
                     /gene="kdsA"
                     /locus_tag="VIJ87_00690"
     CDS             complement(478..1317)
                     /gene="kdsA"
                     /locus_tag="VIJ87_00690"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: protein motif:HMM:NF003543.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008676 - 3-deoxy-8-phosphooctulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HEY5442999.1"
                     /translation="METPIKTKAFSVGNATFGDGRLTVIAGPCVVETAEHTLMMAREC
                     SSRAKEAGLDFVFKASFDKANRSSIKSFRGLGMEAGLEVLQQVKRELGVPVLTDVHDV
                     SQVDRVAEVVDVLQIPAFLCRQTDLIVAAVKSGKVVNVKKGQFLAPQDAKNIVDKARE
                     AGGERLLLTERGATFGYNNLVVDMRSFPIMRGFGVPVVFDVTHSLQLPGGLGDATGGQ
                     SEFIEFLARAGVACRVDAVFMEVHDCPEKALSDGPNALPLDRMQPLLNILRDIHKLVS
                     PAS"
BASE COUNT          378 a          399 c          384 g          340 t
ORIGIN      
        1 aagcggaagg aacgcagtac caaccggact gatcgcggcc aagccgctat tgctctcaac
       61 cggcagcgtg taattcacga ccagcgtggc attggcgcct ggattggctg cattcggcag
      121 ggagacttct gccttgaaca aatcacctcg aggttctgtg cctggacgaa atgttgcagc
      181 tgcgccattc accgagaccg agctgacctt agcttttgaa tttagtttta cggtgaaggt
      241 tcgtcccgct gcgccaccga tgtttgttgc cgaaagcgtc gcagtaacgt tgagcgcgcg
      301 ttcagcttgt tgcacgttaa ctgagatatc gaacgagttg acctgccaga gcgctgacgt
      361 cgatggagtc tgcgctgaaa gctgggggag aaacaaaaga agtaacgcta acgaaagaaa
      421 gatcttcata gtggactcaa aagcagaaca ggtgatttga aaacaaggct gaaagaatca
      481 acttgctgga cttactaact tatgaatgtc gcgcagtata ttcaagagcg gctgcattcg
      541 atctagaggc aacgcattcg gcccatcgga gagcgctttc tccggacaat catgaacttc
      601 catgaacact gcatcaacac ggcacgcaac tccggcacgc gccaggaatt cgatgaattc
      661 ggattggccg ccagttgcat cgcccaagcc cccgggtaac tgaagtgaat gtgtaacatc
      721 aaaaaccacc ggaacgccaa agccgcgcat gattggaaac gatcgcatat cgacgaccag
      781 attgttatag ccaaaagttg cgccacgttc ggtcaaaagt aacctttcgc cgccggcctc
      841 acgcgccttg tcgacgatgt tcttcgcatc ctgaggtgcc aggaactggc ccttcttaac
      901 attgacaacc ttgccggatt ttacagccgc cacaattaga tcagtttgtc gacacaagaa
      961 tgcgggtatc tgtaagacgt cgactacttc agcgacacga tcaacctggg agacatcgtg
     1021 cacatccgtg agcacaggca cgccaagttc tcgcttcact tgttgaagca cttcgagacc
     1081 agcttccatt cccaggccgc gaaagctttt tatcgacgaa cgattggcct tgtcgaacga
     1141 cgctttaaat acaaaatcca atcccgcttc tttcgctcgg gaggagcatt cccgcgccat
     1201 catcaacgtg tgctccgcgg tctcaaccac gcaagggcca gcaatgaccg ttaggcggcc
     1261 atctccaaat gtagcgttac cgactgaaaa agctttggtc ttgatcggag tttccattat
     1321 ttcgtcaatc tgcaattcaa aacggtttct tgagtatacg cttcaccctg tcaacaaatg
     1381 aattgccctt cttcttctcc ggtgtcggcg atgccttcgg ttttgctgat ggactaggtg
     1441 acggcgaagg agtaggcaaa ggtgatggtg acatcgaggg cgacgccagt ggtgaggcgc
     1501 c
//
LOCUS       DATCGC010000070         1511 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_433924, whole genome shotgun sequence.
ACCESSION   DATCGC010000070 DATCGC010000000
VERSION     DATCGC010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_433924"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..456
                     /locus_tag="VIJ87_00695"
     CDS             <1..456
                     /locus_tag="VIJ87_00695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443000.1"
                     /translation="TSKVVPPKPVAVSSAPVIASKPTAQPAPPVISPSVTQQGTNGAA
                     SEPQQTTGKYQPGAVNEQTAQRLARLLVSEIKLYHKSKTEGEDVGDVNIYDMLKEPID
                     KSRQHYKQRMGKTAIETMPDYFHGELVRSLCGGDASRLGPNYQPLNKTA"
     gene            complement(467..1267)
                     /locus_tag="VIJ87_00700"
     CDS             complement(467..1267)
                     /locus_tag="VIJ87_00700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443001.1"
                     /translation="MHTPTIGIVLKRILWCLVLSWPSLTSVRAAEPLQLKTASSHPIQ
                     YYLSLPDGWTATKKWPVVVVIESADREFQNAADAFAQARKTRPFILVTPLVVTNGGAG
                     YRSVPTYKYTAEVWSRIQNGGEFKFDMDGISAIMQDVAKLYGGEEKYFITGFEAGGHT
                     VWGILFNNPEVVRGASLVCPNYLGRWVEEPKISAAPERVSLPIRNFVGTKDEFCQPGN
                     PIHTQMQKAMSLADSHGYKNVSLERIDGKGHERLADEVLTYFSSLLQH"
BASE COUNT          397 a          395 c          357 g          362 t
ORIGIN      
        1 acgagtaaag tggtcccgcc caaacctgtc gcagtttcat ctgctccagt tatagcgagc
       61 aaaccaacgg cacaaccagc tccgccagtt atttcaccaa gcgtcaccca gcagggaacc
      121 aacggtgctg catctgagcc gcaacagaca actggtaagt atcaaccggg agcggttaac
      181 gagcagactg ctcaaagact cgcgcgactg cttgtctcag aaattaagct ctaccataag
      241 agcaagaccg aaggtgaaga tgtgggcgac gtgaatatct acgacatgct aaaggagccg
      301 atcgataaat cgcgccagca ctataaacaa cggatgggaa aaaccgcgat cgaaacgatg
      361 cccgactact ttcatggaga actagtacgt tcactttgcg gcggcgatgc atcccgcctt
      421 ggcccaaatt atcagccttt gaacaaaact gcttaagttc atcggctcaa tgctgcaaca
      481 gcgacgaaaa gtaagttagc acctcatctg caaggcgttc gtgccccttc ccatctattc
      541 gttcaagcga aacgttcttg tagccgtgcg aatccgctaa gctcatagcc ttttgcatct
      601 gtgtgtggat cggattaccc ggctgacaga attcatcttt tgtcccgaca aagttccgaa
      661 tcggaagact gactcgctcc ggagcggccg atatctttgg ttcctcaacc catctaccaa
      721 ggtagttcgg acaaaccaac gacgcacccc gcacaacttc gggattatta aagagaattc
      781 cccatacggt gtggccaccg gcttcgaaac cggtaatgaa atacttttct tcaccgccat
      841 atagcttcgc tacatcctgc ataatcgcgc taatcccatc catatcgaac ttgaattcgc
      901 ctccgttctg aatccggctc catacctcag cggtgtactt gtaggttggg acacttcgat
      961 atccagcacc tccattggtc actactaacg gggtaacaag tatgaaaggt cgagtttttc
     1021 gtgcttgagc aaaggcatcg gcggcgtttt gaaattctcg gtctgcgctt tcgataacca
     1081 ctactacggg ccacttcttc gtcgcggtcc aaccgtccgg tagcgagaga tagtattgaa
     1141 tcgggtgact ggacgcagtt ttcagttgga gtggttcagc cgcgcgaaca gacgtcaaag
     1201 acggccagct caataccagg caccacagga tgcgtttgag tactatgccg atagtgggtg
     1261 tgtgcatgaa aatgttctca ttttgagttt cttaagtacg aggttcttgc tgacacaata
     1321 ttagctttcc atgaaaaggt ccaaaatccc accaactccg gagacggtgt aaagactcga
     1381 gtgggccatc gggtttcgtt cgtgttagtt cgtgtagttt cgtggatcgt tcttttgtgg
     1441 gtactaatag tccgatccac ggaaatcgaa cgaactaaca caaaatagga agcaaacagt
     1501 aacccgagtt t
//
LOCUS       DATCGC010000071         1886 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_300553, whole genome shotgun sequence.
ACCESSION   DATCGC010000071 DATCGC010000000
VERSION     DATCGC010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1886)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1886)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1886
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300553"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..226)
                     /locus_tag="VIJ87_00705"
     CDS             complement(<1..226)
                     /locus_tag="VIJ87_00705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443002.1"
                     /translation="MRLYDCLIVKKEKFLATTKTCYAAERENVLISHLLYDSNDRNPA
                     LINALEGEKIRKAPRTPVREPYDASKLTLIC"
     gene            266..1519
                     /locus_tag="VIJ87_00710"
     CDS             266..1519
                     /locus_tag="VIJ87_00710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443003.1"
                     /translation="MRALFFAAAIGLAGLITVSAGISSEAAALQQTPDPGIQAKGAIG
                     EVKSIDAASKLVTIKTDAGSVVMVLYTDRTTYKKTAPGETSLNNATDITVADVGEGDR
                     IYARGTVAEDRKSISALQIIVMSKGDIAKKQEAERIEWRRRGILGVVTALKPDGNEIT
                     ISSRTMAGTQAVIIPVSDKTEMRRYAPDSIKFSDAKPSTFAELKVGDQLRALGDRTPD
                     GTHFTPQKVVTGSFRTVAGVVTAVDAATGEIKINDLEKKHPLTIVVKSDAVLRKFPPA
                     SEMGMMMGGFNRGAGGGAPPAGGGAPAGGQPAGGQGQGTRGPGAGPGGPGGPGGGRGG
                     GFNINDMLERLPTISVADVKVGDTIIVSSTQGVDPTRLTAISLVSGADTLLTMLAPRP
                     QPGQATPNPAAGLGGGGISFGIGLP"
     gene            1600..>1886
                     /locus_tag="VIJ87_00715"
     CDS             1600..>1886
                     /locus_tag="VIJ87_00715"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY5443004.1"
                     /translation="MPSSPKVFNMNYARLPLRFALSVCLTVVLAMAAYGQARSSLRGL
                     ITDELGAAIVGANVTLTDATGAQKKTTTNAEGVYTFTGLSAGKYAITAAAPG"
BASE COUNT          449 a          456 c          545 g          436 t
ORIGIN      
        1 tacaaatcag ggtcaacttt gaggcatcat atggttcccg gacgggcgtt cggggggctt
       61 tgcgaatttt ctcgccttcg agggcgttaa taagtgcagg gttcctgtcg ttgctgtcgt
      121 agagcaaatg gctaatcaga acattctcgc gttctgctgc gtaacaggtt ttggtagtag
      181 ccagaaattt ttccttcttt acgatcaagc agtcataaag ccgcaacttg cggtgttcac
      241 ttaacaggac agaaaggacg agtagatgag ggcgctcttt tttgcagcgg cgataggact
      301 ggccggtctc ataacagtta gtgcaggtat ttcatcagaa gcagcagcgt tacaacagac
      361 gccggatcct ggcattcaag ccaaaggcgc gattggtgaa gttaagtcaa tcgatgcagc
      421 ctcaaaatta gtcactatca agacggacgc agggtcggta gtaatggttc tctatactga
      481 caggactacc tataagaaaa cggcccccgg tgaaacatcg ctgaacaacg cgactgacat
      541 caccgtcgct gatgttggcg agggcgatcg catctatgct cgcggaacgg ttgccgagga
      601 tcgtaaatca atctcagctc ttcaaatcat cgtgatgtcg aagggcgaca tagcgaagaa
      661 gcaagaggct gaacgaatcg aatggcgtcg ccgcggaatc cttggtgttg tcacggcgtt
      721 gaagcccgac ggtaatgaga tcactatttc gagccgcacg atggcgggga ctcaagctgt
      781 gatcattcca gttagtgaca agactgagat gcgccgttac gcgcccgact cgatcaagtt
      841 cagtgatgcg aagccgagca cttttgctga actgaaagtt ggcgatcaac ttcgcgctct
      901 tggtgatcgg acaccagacg gaactcactt cacaccgcaa aaagttgtaa ctggaagttt
      961 tcgtactgta gcgggagttg tgactgcggt cgatgcggca actggcgaga tcaagatcaa
     1021 cgaccttgag aagaagcatc cgctgaccat tgtggttaag agtgatgctg tcctgcgtaa
     1081 gtttccacct gcttccgaga tgggaatgat gatgggtggt tttaatcgtg gtgcaggtgg
     1141 tggagctcct cctgctggag gcggagcgcc tgcgggtggc caacctgctg gtggccaggg
     1201 acaaggaaca agggggccag gagcaggtcc aggcggcccg ggtggtcctg ggggtggacg
     1261 cggtggagga ttcaacatca acgacatgct cgaacggcta ccaacaattt ctgtcgctga
     1321 tgttaaggtc ggcgacacaa tcatcgtttc cagtacgcag ggcgttgatc caactcgcct
     1381 gaccgcgatt tcactagttt caggcgcaga tactctcttg acgatgcttg cacccaggcc
     1441 ccagccagga caggcaacac ctaatccagc agctggtctg ggaggcggtg gaatctcatt
     1501 cggaattgga ttgccatagt ctgaagcgtc aaagctttac ggacgtctga tgttttgtcg
     1561 caggcgtccg agcttcgatt aaccatgtat aagggcgtca tgccctcttc cccaaaggtc
     1621 ttcaacatga actatgcccg acttcccctg cgttttgctc tttctgtttg tttgacggtg
     1681 gtccttgcta tggcggcgta tggccaggca agaagttccc taagaggttt aataactgac
     1741 gaacttggtg cggcaatcgt cggcgcaaat gtcactctta cggatgctac aggggctcag
     1801 aagaagacaa cgacaaacgc agaaggcgtt tacacgttca ccggcttgag cgcagggaag
     1861 tatgcgatca cagccgcggc tccagg
//
LOCUS       DATCGC010000072         1438 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_234035, whole genome shotgun sequence.
ACCESSION   DATCGC010000072 DATCGC010000000
VERSION     DATCGC010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1438)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1438)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1438
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_234035"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..484)
                     /locus_tag="VIJ87_00720"
     CDS             complement(<1..484)
                     /locus_tag="VIJ87_00720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443005.1"
                     /translation="MSLSRFAFVLVLISAVSMIHSIDVKGQETNIKNLIQDLRSHRWE
                     GPSMVAMPLQWDLNLTEPMRKILEIGTPTQQELIDNINDPAIKDQVIILLGGIGDEHS
                     ISPIIKAMIQKKSLKSTPNSERINLAANIALTNITVADVIWHYGGGIVQVEPSKDSKE
                     R"
     gene            complement(578..>1438)
                     /locus_tag="VIJ87_00725"
     CDS             complement(578..>1438)
                     /locus_tag="VIJ87_00725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443006.1"
                     /translation="KAVVKNDTGNVTVTITPATPAPNITLTLSTRSGTGAAQFTSNNS
                     TSMTITQTTNVEIKGLTESSTRDNIRIEAKDGQGKKLDDEDFSVLWVTISIRTSGSIS
                     SDNNAKSVIGQVQGNSSPTLGPTRHTGSIAAVGQFWGNAVELVGTVAPKNFDEKIMLD
                     RQRLAANYFFGANNSLETGNSGGAKVDTSNVILRDDDPKPNGKIYDYDAPGLGNLPAS
                     VAVGTTRRQRINFHEFAMWNGKKASDDFSWFARISIVKTAGTDALSTDVPGDNVAGQG
                     STPLTWNLQP"
BASE COUNT          317 a          367 c          349 g          405 t
ORIGIN      
        1 agcgctcttt tgaatctttg gatggttcaa cctgtacgat accgccaccg taatgccaga
       61 tgacatctgc aaccgtgata ttggttaaag caatatttgc tgccaagtta attcgttcgg
      121 agtttggagt cgacttgaga cttttcttct ggatcattgc cttgataatt gggctgatag
      181 agtgttcgtc gccgatacct cccaaaagaa tgatgacctg atccttgatc gccggatcgt
      241 tgatgttgtc gatcaactct tgttgcgtcg gagttccaat ctccagaatc ttgcgcattg
      301 gctcggtcag attcagatcc cactgaagcg gcatcgccac catggaaggc ccctcccatc
      361 gatgactgcg caagtcttgt atcaagtttt tgatgttagt ttcctggccc ttcacgtcaa
      421 tactgtgaat cattgaaact gctgatatca gaacaagaac gaaggcaaat ctactgagac
      481 tcattgatgt aacccttctg tgagaaaggc gcaggtcttt cgattggctg aaagacctgc
      541 gcatccgtat tacttcattc agaaattcca gaaacaatca gggttgcaag ttccacgtca
      601 gtggtgtgga accttgccct gccacattgt ctcccggaac gtcggtactg agtgcgtctg
      661 ttccggcagt cttcacgatt gagatgcgag cgaaccagga gaagtcgtcc gacgctttct
      721 tgccgttcca catggcgaac tcatggaagt ttatgcgttg ccgacgagtt gtcccgaccg
      781 ccacgctcgc aggcagatta cccaggccag gcgcgtcgta atcgtagatc ttaccgttag
      841 gcttcgggtc gtcgtcacgc aagatgacgt tcgatgtatc gacctttgca cctccgctat
      901 tccctgtttc cagcgaattg ttagcaccga aaaagtaatt ggctgccagg cgctgtcgat
      961 ccagcatgat cttctcgtcg aagttctttg gcgctaccgt tcccactaac tcaacggcgt
     1021 taccccagaa ctgcccaact gcggcgatcg accctgtatg ccgagtaggt ccaagcgttg
     1081 gcgaactatt gccttgcact tgtcctataa ccgattttgc attgttgtca gaagagatgc
     1141 ttccgctggt cctaattgag atagtcaccc aaagcacgct gaaatcttca tcgtccagtt
     1201 tcttgccctg accatctttg gcttcgatgc gtatgttgtc acgcgtacta ctttcggtaa
     1261 gacctttgat ctcgacgtta gtagtttgag tgatagtcat actggtcgag ttattagacg
     1321 tgaactgtgc cgcaccggtt ccgctacgcg tcgacaacgt cagggtgata ttaggtgctg
     1381 gagttgccgg ggtaatcgtt acagttacat tgccggtgtc attcttaacg acagcttt
//
LOCUS       DATCGC010000073         1032 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_200867, whole genome shotgun sequence.
ACCESSION   DATCGC010000073 DATCGC010000000
VERSION     DATCGC010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1032
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200867"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..211
                     /locus_tag="VIJ87_00730"
     CDS             <1..211
                     /locus_tag="VIJ87_00730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443007.1"
                     /translation="EKHNSDEARNHYNYALVYGALGDKDKAFAEMERMRIGPFRLAAM
                     KFDPQFDPLRDDPRFKDYLKKHGVE"
     gene            372..>1032
                     /locus_tag="VIJ87_00735"
     CDS             372..>1032
                     /locus_tag="VIJ87_00735"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEY5443008.1"
                     /translation="MTDSNKRSLEFLSLSLVLGMVAAVSALLFFAWLSSEVLEGETQH
                     FDAVTRDFVHQFASPTLTATMRGISFAGSSLFLTTASIAMFLWFMSRHWRRDAWLFGI
                     TVMGAGILNTTLKLTFRRPRPVPFFNLLPPESFSFPSGHSLASFCFFGALAVIFSARI
                     RNRSIHILVWTVASVVVFLIGLSRIYLGVHYTTDVLAGFTAALIWVMVVRFVELRITR
                     FR"
BASE COUNT          231 a          250 c          259 g          292 t
ORIGIN      
        1 cgaaaagcac aattcggacg aggcgcgaaa tcactacaac tatgcattag tttatggagc
       61 gctgggtgat aaagataaag ccttcgccga gatggaacga atgaggatag gacctttcag
      121 acttgctgca atgaagtttg atccgcagtt tgatccgcta cgtgatgatc cgcgattcaa
      181 ggattatttg aagaagcacg gagttgagta ggaggaaaag atttattgga catcggtcat
      241 tttccatttc tcattttcca ttttttcgac ccactgaggc gtcctaattg ccaggacaaa
      301 tggaaaatga gaaatggaaa atgaccaatg ataaatagac ctctttccta agactggtat
      361 cattcccgca agtgactgac tctaacaaac gctcgctaga gtttctcagc ctttcactcg
      421 tgctcggcat ggtcgccgca gtcagcgcgc ttctattctt cgcctggctc agcagcgagg
      481 tgcttgaagg tgagacacaa cacttcgacg ccgtcactcg cgactttgtt catcagtttg
      541 cctcgccgac tttgactgca actatgcgcg gaatctcgtt cgccggatcg agtctgtttc
      601 tcaccacggc ctcgatagcg atgtttcttt ggttcatgtc tcgacactgg cgtcgcgatg
      661 catggctatt cggaatcacc gtgatgggtg cgggaatctt gaatacaacg ctcaagctga
      721 cattccggcg tcccaggcct gttccgttct ttaacctgct tcctcccgaa tcgttcagtt
      781 tccccagcgg tcattcactg gcgagtttct gtttctttgg cgccttagcg gtgatcttct
      841 cggctcgaat caggaatcgc agtattcaca ttctggtgtg gacggtcgca tctgtagtgg
      901 tctttttgat cggactgtcg cgtatctatc tgggtgttca ttacacgacc gatgtgctcg
      961 caggattcac agcggctctg atctgggtga tggttgtgag attcgttgaa ctaagaatca
     1021 cgaggtttcg at
//
LOCUS       DATCGC010000074         1155 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_267369, whole genome shotgun sequence.
ACCESSION   DATCGC010000074 DATCGC010000000
VERSION     DATCGC010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1155)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1155)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1155
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_267369"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..331)
                     /locus_tag="VIJ87_00740"
     CDS             complement(<1..331)
                     /locus_tag="VIJ87_00740"
                     /inference="COORDINATES: protein motif:HMM:NF014307.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)(+) transhydrogenase (Re/Si-specific)
                     subunit beta"
                     /protein_id="HEY5443009.1"
                     /translation="MQTYFIELSYLLASILFILGLKGLSHPETAKRGMHLAEFGMLMA
                     IIGTLVHHEIITYTWILAGLAIGSVVGLAMGLWVPMTAMPQRTALSHAFGAFAAALVG
                     ISEFYKHG"
     gene            complement(509..805)
                     /locus_tag="VIJ87_00745"
     CDS             complement(509..805)
                     /locus_tag="VIJ87_00745"
                     /inference="COORDINATES: protein motif:HMM:NF024179.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P) transhydrogenase subunit alpha"
                     /protein_id="HEY5443010.1"
                     /translation="MSSETLISALYVFALAAFLGYQVISRVPPLLHTPLMSATNAISG
                     ISLVGSIVTAGAHYNTVSTVLGFVAVVCSTTNVVGGFVITDRMLRMFKKKELKK"
     gene            complement(852..>1155)
                     /locus_tag="VIJ87_00750"
     CDS             complement(852..>1155)
                     /locus_tag="VIJ87_00750"
                     /inference="COORDINATES: protein motif:HMM:NF013430.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443011.1"
                     /translation="RGAMVIDLAGATGGNCALTKADETVERNGVTIIAPTNLAATVPV
                     HASQLYSRNITAFLTPMIKDGQLTIDMNDDVVGPSCVTHQGEVVNKRVAALLSSND"
BASE COUNT          295 a          275 c          306 g          279 t
ORIGIN      
        1 cgccgtgttt gtaaaattct gatatgccga ctagcgctgc agcgaaggcg ccaaacgcat
       61 gtgagagcgc ggtgcgttgc ggcatcgcgg tcattggtac ccacaaaccc atcgcgagtc
      121 cgaccacaga gccgatcgcg agacctgcga gtatccacgt gtaagtgatg atctcgtggt
      181 ggaccagcgt gccgatgatg gccatcaaca tgccaaactc ggcgagatgc ataccgcgtt
      241 tggcggtttc gggatggctt aaccccttca atccgagaat gaagaggatt gaagcgagca
      301 ggtagctgag ttctatgaag taggtttgca ctggcgctgg taacttgtta acgagaaagt
      361 aggaaagtca ttgttcatat atcattttcc atttatcagt tggccatttg aagagctccg
      421 atcgacatcg agtcggagga gttggcggaa ggtctttttc aaaatgataa atggaaaatg
      481 gcaaatgata tatgaccaat aagttctttc acttcttaag ttccttcttt ttaaacatcc
      541 gcagcattcg atcagtaata acgaatccac caactacgtt tgtggtagag cagacgactg
      601 cgacaaaacc caggactgtg ctgactgtgt tgtagtgagc accggcagtt acgattgaac
      661 cgaccaaaga gataccggaa atggcatttg tcgctgacat caatggagtg tgcagcaacg
      721 gtggcacccg cgagataacc tggtagccaa gaaacgcagc cagcgcgaaa acgtaaagtg
      781 cggagatcag agtttctgaa gacatttact tcgctccgtt aaatcgtcgt ttcatttcgc
      841 agaagaggaa ttcagtcatt gcttgaaaga agagccgcga cgcgcttgtt cacaacttca
      901 ccctggtgcg ttacgcatga cgggccaaca acatcgtcgt tcatatcgat cgtcaactgc
      961 ccgtccttga tcattggcgt caagaacgcg gtgatgttac gcgagtacag ttggcttgcg
     1021 tgaactggaa cggtggcggc gagatttgtt ggcgcaatga tcgtcacgcc gttgcgttca
     1081 actgtttcgt ccgcttttgt cagcgcacag tttccgccag ttgctccagc gagatcgata
     1141 accatcgcac cacgc
//
LOCUS       DATCGC010000075         1142 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_34364, whole genome shotgun sequence.
ACCESSION   DATCGC010000075 DATCGC010000000
VERSION     DATCGC010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1142
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34364"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1142
                     /locus_tag="VIJ87_00755"
     CDS             <1..>1142
                     /locus_tag="VIJ87_00755"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HEY5443012.1"
                     /translation="IIGDSSDKFSNDKIGRVKNILVVDDGGNVRDSVVADYNPRERED
                     NTTRYVQFKDVPLPPLRRAAPFPDEEEPLPAWMPQSSEVDFGEAGAFYFPVQTDKGRR
                     FIIVELGSSNTFTNLLERQASRSAFYTLMLLLATTLVTGFFVWRFTRPIKELSIAARK
                     VAGGDFEVRVSSERTDEMGTLASAFNEMTAQLDRARELETQLHQAEKGAVVGRLAAAI
                     AHEIRNPLNYINLTLDHLRSSFAPLDETKRQTFVKLTDQLKAKVARINRHITDFLKYS
                     RPSTLELREMDIRVVAEDAMRIVEARAEESGIETSIQQEGTLPTIMADGDSLRSVFTN
                     LVVNALEAMNGEGGKVSIKLSKSDPNSVKVEVTDSGCGISAKDISK"
BASE COUNT          297 a          295 c          295 g          255 t
ORIGIN      
        1 aatcatcgga gactcctcgg ataagttctc aaacgacaaa attggcagag ttaagaacat
       61 tctcgtcgtc gacgacgggg gtaatgttcg ggatagcgtt gtagctgatt acaacccgcg
      121 cgagcgcgaa gacaatacga cccgttatgt acaatttaag gatgtgccgc ttcccccact
      181 gcgtcgagcg gcgcccttcc ccgatgaaga ggaaccatta ccagcgtgga tgccgcaatc
      241 gagtgaggtc gatttcggcg aagcgggagc gttttacttt ccggttcaga cggacaaggg
      301 ccgccgattc attattgtcg aacttggctc gtccaacacc ttcacaaact tgcttgaacg
      361 acaggcgtcg cgttccgcgt tctacacgct aatgctcctg ctcgcgacaa cacttgtcac
      421 gggcttcttt gtctggaggt ttacgcgacc aatcaaagag ctctcaatcg ctgcccgcaa
      481 ggttgcgggt ggcgacttcg aagttcgggt ttcaagtgag cgaaccgacg agatgggaac
      541 actcgcttcg gcgtttaatg aaatgaccgc tcaactggat cgcgcgcgtg agttagagac
      601 tcaactgcac caggcggaga aaggcgctgt tgtcgggcga ctcgccgcag cgatcgctca
      661 cgagattcgc aatcctctta attacatcaa tctgacactc gatcatcttc gttcgtcttt
      721 tgctccactc gacgaaacaa aacgtcagac gttcgtcaaa cttaccgatc aactcaaggc
      781 caaagtcgcc cgcatcaatc gtcacatcac agactttcta aagtattcga gaccttcaac
      841 cctcgagctt cgggaaatgg acattcgagt tgtcgcagaa gatgcaatgc gcatcgttga
      901 agctcgtgca gaagagagcg gcattgagac aagcattcag caggaaggaa cactgccaac
      961 aatcatggct gatggcgatt cgctccgctc agttttcacg aatcttgtag tgaatgcctt
     1021 agaagcaatg aacggtgaag gcgggaaagt ttcaatcaaa ctgtcgaaga gcgatccaaa
     1081 ctctgttaag gtggaagtca ccgacagcgg atgtgggatt agcgcaaaag acatttcaaa
     1141 ag
//
LOCUS       DATCGC010000076         1170 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_300619, whole genome shotgun sequence.
ACCESSION   DATCGC010000076 DATCGC010000000
VERSION     DATCGC010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1170)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1170
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300619"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..472)
                     /locus_tag="VIJ87_00760"
     CDS             complement(<1..472)
                     /locus_tag="VIJ87_00760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443013.1"
                     /translation="MPYYQKLGEVPKKHHIWFHRNGAGPGYKNEGIYYEHVVTTEGFN
                     EAFSIMYHLRPPTRVRNVKLLKCEELKKAADSPLRHHHLRTANLPRRGDLYSGRVPIL
                     FNQDMTAWRCRPEKEYGQFQYYKNGGADEIIFVFKGGGTIESVFGQQRYRAEDYI"
     gene            complement(514..>1170)
                     /gene="hppD"
                     /locus_tag="VIJ87_00765"
     CDS             complement(514..>1170)
                     /gene="hppD"
                     /locus_tag="VIJ87_00765"
                     /EC_number="1.13.11.27"
                     /inference="COORDINATES: protein motif:HMM:TIGR01263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003868 - 4-hydroxyphenylpyruvate
                     dioxygenase activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006572 - tyrosine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylpyruvate dioxygenase"
                     /protein_id="HEY5443014.1"
                     /translation="FMPGYRKWESSYNPADTGLLYVDHCVGNVGWNQMNPWVKFYEDV
                     MGFRNILSFDDKDISTEYSALMSKVMSNGNGYVKFPINEPAEGKKKSQVEEYLDFYDG
                     EGVQHVAIATNDIVKTVTELQKRGLAFLNIPSTYYETVLDRVGHIDEDLEPLQRLGIL
                     VDRDDEGYLLQIFTKPVEDRPTLFFEIIQRKGAKSFGKGNFKALFEALEREQEARGNL
                     "
BASE COUNT          267 a          304 c          284 g          315 t
ORIGIN      
        1 cgatgtaatc ttcagcgcga tatcgctgct ggccaaaaac ggactcgatc gtcccaccgc
       61 ctttgaaaac gaagatgatt tcgtcggcgc cgccgttttt atagtactga aactgtccgt
      121 attccttctc aggacggcag cgccacgcgg tcatgtcctg attaaagaga atcggaacgc
      181 ggccactata gagatcgccg cgacgcggaa ggtttgcggt gcgcagatga tgatggcgaa
      241 gcggactgtc agcagctttc ttcagctctt cgcatttgag tagcttgaca ttgcgtacac
      301 gcgtgggcgg tcgaaggtga tacatgatgg agaaggcttc attgaatcct tcggtggtaa
      361 caacgtgctc gtaatagatg ccttcgttct tataaccggg gccagcacca ttgcggtgaa
      421 accagatgtg atgttttttc ggaacttctc cgagcttctg ataatacggc atacctaatc
      481 ctccttaagt cgagaaaaat cgtaagttct caattataga ttccctcgcg cctcctgttc
      541 gcgttccaac gcttcgaaca aggccttgaa attccccttg ccgaagctct tcgcgccttt
      601 gcgctgaata atttcgaaaa acaaggttgg ccgatcttcc accggcttgg taaatatttg
      661 aagtaagtaa ccttcgtcgt ctcgatcaac tagaattccg agtctttgca ggggctccag
      721 atcttcgtcg atgtgcccta ctctatccag aacggtctcg tagtaggtgg acgggatatt
      781 taaaaacgcc agaccgcgct tttgcaattc cgtcacggtc ttaactatat cgttggtcgc
      841 aattgcgacg tgctggacgc cttcgccatc gtagaagtca agatattcct cgacctgcga
      901 tttctttttc ccttcggccg gttcgttaat tggaaacttc acgtaaccat taccgttact
      961 catgaccttg ctcattagag ccgagtattc ggttgagata tccttgtcgt cgaagctcaa
     1021 aatgttgcgg aagcccatca catcttcgta aaacttgacc caggggttca tctggttcca
     1081 gccgacgttg ccgacgcaat gatcgacata gaggagcccg gtgtccgccg gattgtagct
     1141 gctctcccat ttgcgatagc ccggcatgaa
//
LOCUS       DATCGC010000077         1602 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_34388, whole genome shotgun sequence.
ACCESSION   DATCGC010000077 DATCGC010000000
VERSION     DATCGC010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1602
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34388"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..908
                     /locus_tag="VIJ87_00770"
     CDS             <1..908
                     /locus_tag="VIJ87_00770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443015.1"
                     /translation="FRRIYAFVHNPLRSEPASTALEVVKDETRDGETRMHLRRKISGR
                     KKSEFQQTEYWIVLSRDPKRNGVQRYEGPVTEPGHEKEPLHCVATYQRVTDKTIQPPG
                     NTAASPSEHSAPSSSPAASSSAESALESSNSSLSANGGAKETTVSLLGGKLKLDVPSD
                     FSRDDDDPKNPKTLAKFTGPDGAWGEVLRGTHGLTPDKLEGYLKMRVAEYSKGFNWLP
                     KDSHLQWLKKDIVTIDGRKWADWRYVPMLKGTKDYSHSPVYTRFLTTSYKGQLLEITF
                     TSNLNTAPELKQEIDRIMDSVHLEE"
     gene            950..1501
                     /locus_tag="VIJ87_00775"
     CDS             950..1501
                     /locus_tag="VIJ87_00775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443016.1"
                     /translation="MLTKHKALILGLLTVITSSVVAAGDDPEELIRALYKAHRPWEHK
                     ELNIRSRAVLSKYFSPELTTLFLKNAQVERDCPKGDLCGLEFDPILGSQDFDDHLDFK
                     LHITEATPPQTGRFEARFKLFNEQKPEQEQVLIFQLVQLKNGWRIDDITYTKHNTTLK
                     AVITAILKEAEDLKPKSKNTTNK"
BASE COUNT          434 a          430 c          399 g          339 t
ORIGIN      
        1 cgtttagacg catttacgct ttcgtacata accctcttcg ttccgagcct gcatcgaccg
       61 cccttgaagt cgttaaggat gaaacacggg atggcgaaac gcggatgcat cttcgccgca
      121 aaatctctgg caggaaaaag agcgagtttc agcagacgga atattggatt gtcctgagcc
      181 gggatcccaa acgcaatggc gtgcagcgct acgaaggccc ggtgacggaa ccgggtcacg
      241 agaaagaacc attgcactgc gtggccactt atcagcgcgt gaccgacaaa acgatccaac
      301 cgccggggaa caccgccgct tcgccatcgg agcacagtgc accatcatct tcgcctgctg
      361 cgtcatcgag tgcagagtcg gccttggaat cgagcaatag cagcctctcc gcaaatggcg
      421 gagcgaagga aacaacagtt agtctcctgg ggggcaagct gaagctggac gtgccatcgg
      481 atttctcgcg cgatgatgac gatcccaaga atccaaagac actggctaaa ttcacgggcc
      541 ccgatggagc atggggagaa gtcttgcgcg ggacgcatgg tctgaccccc gacaagctcg
      601 agggttatct caagatgcgc gtggccgaat acagcaaagg cttcaactgg ctaccgaagg
      661 attcgcacct tcaatggctg aagaaagaca tcgtaaccat cgatggccgc aagtgggcgg
      721 attggcgtta tgtcccgatg ctaaaaggaa ccaaggatta ctcccacagc cccgtttaca
      781 cgcgttttct aaccacttct tacaaaggcc agctgttgga gattaccttt acctccaacc
      841 tgaacacagc acctgagtta aagcaggaga tagatcgcat catggactcg gtgcatctcg
      901 aggaatgaga gacaccaatg tcactaaagt acactaattt cagaatctga tgctcacgaa
      961 gcacaaggca cttattctcg gattgctcac ggtcattaca tcatctgtgg ttgcagctgg
     1021 agacgaccca gaggaactga ttcgcgccct ttacaaggct caccggcctt gggagcacaa
     1081 ggaactcaac atccgcagtc gcgctgtgct gtcgaaatat ttcagtcccg aactaaccac
     1141 gttattccta aagaatgcgc aggtggaacg agactgtccc aagggcgatc tttgtggact
     1201 tgagttcgac ccgatccttg gatctcagga cttcgacgac cacctcgact ttaagcttca
     1261 catcactgaa gcaacgccgc cgcaaactgg ccgattcgaa gcacgtttca aattatttaa
     1321 cgaacagaag ccggagcaag agcaagtgct cattttccaa cttgttcagt tgaaaaacgg
     1381 atggcgcatt gacgacatca cttataccaa gcataacacc acacttaagg cagtgattac
     1441 agcgattctt aaggaagcgg aggatctcaa accgaagtca aagaacacca ctaacaaatg
     1501 actagatcgt ttttcatctt cgtcgccata gcaaccttgc ttttactacc aggtcgtgtt
     1561 tgggcatgtg cttgttgcgc ccatccaggt gaataccaaa tg
//
LOCUS       DATCGC010000078         2684 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_400581, whole genome shotgun sequence.
ACCESSION   DATCGC010000078 DATCGC010000000
VERSION     DATCGC010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2684)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2684)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2684
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_400581"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            395..1917
                     /locus_tag="VIJ87_00780"
     rRNA            395..1917
                     /locus_tag="VIJ87_00780"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            2049..2125
                     /locus_tag="VIJ87_00785"
     tRNA            2049..2125
                     /locus_tag="VIJ87_00785"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2083..2085,aa:Ile,seq:gat)
     gene            2141..2217
                     /locus_tag="VIJ87_00790"
     tRNA            2141..2217
                     /locus_tag="VIJ87_00790"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2175..2177,aa:Met,seq:cat)
     gene            2227..2302
                     /locus_tag="VIJ87_00795"
     tRNA            2227..2302
                     /locus_tag="VIJ87_00795"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2260..2262,aa:Ala,seq:tgc)
     gene            2492..>2684
                     /locus_tag="VIJ87_00800"
     rRNA            2492..>2684
                     /locus_tag="VIJ87_00800"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          748 a          577 c          721 g          638 t
ORIGIN      
        1 gatcagccga atgttgccaa ctctgatgtg ccaactgact ataccgacat cgccactgag
       61 gccgtgaagt ctatacggga gcgcatcaat atccgctggt cgaaatcctt ttaagatttt
      121 gttcgtgtcg gcttgacaaa atgtcggcca ccatacagaa tcataaattg cttccaagca
      181 cagttcttaa cggttctgaa aaaaagataa aagctttgct tgttagcttg acatcctaaa
      241 gtgcttctgt ataatcagga gtttcgctta tagaaaaagc gaatgcaaaa aaaaggttga
      301 tatttgaaaa ctagatatgc gtgtccatgt gttaattcgt ataacaaaaa gtccaattaa
      361 ggcttcggcc tgattggcat ccatgaacta ggaaatcaac gagagtttga tcctggctca
      421 gaatcaacgc tggcggcgtg cctcagacat gcaagtcgaa cgattaaact ttccttcggg
      481 aaagatataa agtggcgcac gggtgagtaa cacgtaagta atctaccttc gagtggggaa
      541 taacgtccgg aaacggacgc taataccgca taatgcagcg gcatcgaaag atgacagttg
      601 ttaaaggagc aattcgcttg aagaggagct tgcggcagat tagctagttg gtaaggtaat
      661 ggcttaccaa ggcttcgatc tgtatccggt ctaagaggac ggtcggacac actgacactg
      721 aataacgggt cagactccta cgggaggcag cagtcgggaa ttttgggcaa tgggcgaaag
      781 cctgacccag caacgccgcg tgaaggatga agtatttcgg tatgtaaact tcgaaagaat
      841 aggaagaatt aatgacggta ctatttataa ggtccggcta actacgtgcc agcagccgcg
      901 gtaatacgta gggaccaagc gttgttcgga tttactgggc gtaaagggcg cgtaggcggc
      961 atgacaagtc acttgtgaaa tctccgggct taactcggaa cggtcaagtg atactgtcgc
     1021 gctagagtgc ggaaggggca atcagaattc ttggtgtagc ggtgaaatgc gtagatatca
     1081 agaggaatac ctgaggtgaa gacgggttgc taggccgaca ctgacgctga agcgcgaaag
     1141 ccaggggagc aaacgggatt agataccccg gtagtcctgg ccttaaacga tgaatacttg
     1201 gtgtctggag tctctatagc tccgggtgcc gtcgctaacg tttttagtat tccgcctggg
     1261 gagtacgcac gcaagtgtga aactcaaagg aattgacggg gacccgcaca agcggtggag
     1321 catgtggttt aattcgacgc aacgcgaaga accttacctg gactagaatg tgagggaagg
     1381 tcggttaatg ccgtccgtcc gggaaaccgg acccaaaaca aggtgctgca tggctgtcgt
     1441 cagctcgtgt cgtgagatgt tgggttaagt cccgcaacga gcgcaaccct tatcaacagt
     1501 tgccatcatt aagttgggaa ctctgttgag actgccgttg ataaaacgga ggaaggtggg
     1561 gatgatgtca agtcatcatg gcctttatgt tcagggctac acacgtgcta caatggccgg
     1621 tacaaaacgt cgcaatcccg caagggggag ctaatcgcta aaaccggtct cagttcggat
     1681 tgaagtctgc aactcgactt catgaagttg gaatcgctag taatcgcaaa tcagcatgtt
     1741 gcggtgaata cgttcccggg tcttgtacac accgcccgtc acatcacgaa agtaggttgt
     1801 actagaagtg gccgggccaa cccgcaaggg aggcaggtta ccacggtatg atttatgatt
     1861 ggggtgaagt cgtaacaagg tagctgtagg agaacctgtg gctggatcac ctccttaaac
     1921 atacgacact tggcattcgt tctaacaaga tcaaatgtca gaccgacata tctagttttc
     1981 agatatcaaa tacgatattg atctttaaca tcgggccttt gagcccgttt ttaaacaaga
     2041 aagctcacgg gcctgtagct cagttggtta gagcgcacgc ctgataagcg tgaggtcggt
     2101 agttcgagtc tacccaggcc caccacttat catggtttat cgcggggtgg agcagtccgg
     2161 tagctcgttg ggctcataac ccaaaggtcg caggttcaaa tcctgtcccc gcaaccaact
     2221 ttctttgggg atgtagctca gctgggagag cacctgattt gcattcaggg ggtcgcaggt
     2281 tcgattcctg tcatctccac cagtttttcc ggaacttctt taagcagccg aaatggttga
     2341 aatggaagtt ctgatcatga acttcggatc ttgatctttg acaactgaat acattgtaga
     2401 aaatctacaa gttgcaaaaa aattgtaagt taaacaagta tcgatcagat aacttgcgag
     2461 taggcgtatt ttgcttgcga acaagtttta tggtcaagct actaagggca tgcggtgaat
     2521 gccttggcac ttaaagacga tgaaggacgt gaaaagctgc gataagcgac ggtgaggagc
     2581 acatatccac tgacccgtcg atttccgaat gggggaaccc tataaacgac tgcctgaatt
     2641 catagggcag aacgagccaa cccagggaag tgaaccatct cagt
//
LOCUS       DATCGC010000079         1268 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_234145, whole genome shotgun sequence.
ACCESSION   DATCGC010000079 DATCGC010000000
VERSION     DATCGC010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1268)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1268)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1268
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_234145"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(56..>1268)
                     /locus_tag="VIJ87_00805"
     CDS             complement(56..>1268)
                     /locus_tag="VIJ87_00805"
                     /EC_number="1.5.5.1"
                     /inference="COORDINATES: protein motif:HMM:NF017038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004174 -
                     electron-transferring-flavoprotein dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="electron transfer flavoprotein-ubiquinone
                     oxidoreductase"
                     /protein_id="HEY5443017.1"
                     /translation="TGDKGIDKEGKRKANFEPGVDLKAKVTVLGEGPRGSLTKQLVQR
                     LGLDEGREPQVYSIGVKELWELPDNRYPAGRVTHTLGFPSDSQTYGGGWIYGMQNNIV
                     NIGYVTGLDYKDPLLDPHAEFQRYKTHPFIAKLLEGGKMIRYGAKTIAAGGYFAMPRT
                     YGDGFLLVGDCAGFLNSQRLKGIHSAIKSGMLAAEAIFDALLAGDFSAKQLESYETIV
                     NDSWIIPELKKVRNFHAGFKHGRWIGMVNTGLQFFTGGRAWGLFDRDKAKPGHEDMKK
                     LSAYGYRGDKIEQRYKDLRFDGKLTFNKVTDVYHAAVGHDEDQPAHLHVLDTNICSTR
                     CAEEYANPCQRFCPAAVYEMVDDGASGKRRLQINFSNCVHCKTCDIMDPYQIINWVTP
                     EGGGGPDYKGM"
BASE COUNT          272 a          360 c          309 g          327 t
ORIGIN      
        1 gccccaggct ttatgctgtc gctcgcttcg cgagctttgc tcacgcttcg cgggcttaca
       61 tgcctttgta gtctggcccg ccaccgccct cgggcgtcac ccagttgata atctggtaag
      121 ggtccatgat gtcgcaggtc ttgcagtgaa cgcagtttga gaagtttatc tgtaaccgac
      181 gcttgccgct cgcaccatcg tcaaccattt cataaacagc agccggacaa aaccgttggc
      241 aggggttcgc gtattcttct gcgcaacgcg tcgaacagat gtttgtgtcg agcacatgta
      301 agtgcgcagg ctggtcttca tcatggccta cggccgcatg atagacgtca gtgactttgt
      361 tgaaggtgag cttaccgtcg aaacgcaaat ccttgtaacg ctgttcgatc ttgtcgccac
      421 gataaccgta agccgaaagc ttcttcatgt cttcatggcc gggtttggct ttgtcacgat
      481 caaagagccc ccatgctcga ccgcccgtga agaactgcag accggtgttc accattccaa
      541 tccaacgacc gtgtttgaat ccagcgtgaa agttcctgac ctttttcaac tcgggaataa
      601 tccaactatc gttaacgatc gtttcatagc tctcgagttg tttcgctgaa aaatcgccag
      661 ctaacagcgc atcgaagatt gcttctgccg caagcatgcc gcttttgatc gcagagtgaa
      721 ttcccttcag gcgttgagag ttcaagaacc cggcacaatc gccaaccagg agaaaaccat
      781 ccccataagt tctgggcatc gcaaagtatc cgcctgccgc aatggtcttg gccccgtacc
      841 ggatcatctt tccgccctcg agtagttttg cgatgaaagg atgggtctta tagcgttgga
      901 actctgcgtg tggatcgagc agaggatctt tgtagtccag tcccgtcaca tagccaatgt
      961 tgacgatgtt gttttgcatt ccgtagatcc agccaccgcc ataagtctgc gagtctgacg
     1021 gaaaaccgag cgtgtgcgtg acgcggccgg ctggatagcg attatccggc aattcccaaa
     1081 gttccttgac accgatgcta tagacctgtg gctcgcgtcc ttcatcaaga ccgagacgtt
     1141 gcaccagttg ctttgttaat gacccacgtg gcccttcacc caacacagtc accttagcct
     1201 tcagatctac acccggttcg aaattagctt tgcgcttccc ttctttgtcg atccccttgt
     1261 cgcctgtg
//
LOCUS       DATCGC010000080         1199 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_300629, whole genome shotgun sequence.
ACCESSION   DATCGC010000080 DATCGC010000000
VERSION     DATCGC010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1199)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1199)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1199
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300629"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            165..722
                     /locus_tag="VIJ87_00810"
     CDS             165..722
                     /locus_tag="VIJ87_00810"
                     /inference="COORDINATES: protein motif:HMM:NF025173.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Spy/CpxP family protein refolding chaperone"
                     /protein_id="HEY5443018.1"
                     /translation="MRSIVRQILPICALLVLTTLTVFAQSPQDSQTNASPPGAGPDIL
                     EQLRLTPDQAQKIRQIQRQTREERASIGDRLRESNRALEDALYAPTLDEALIEQRIQA
                     VAAAQSAQLRMRIQTEMRIRRILNPDQLAVWSDLRLKAGDVIRNRQDSGRPIRPGAEG
                     LRPNQRNGIAPLDPRRNAPIRNPRP"
     gene            1005..>1199
                     /locus_tag="VIJ87_00815"
     CDS             1005..>1199
                     /locus_tag="VIJ87_00815"
                     /inference="COORDINATES: protein motif:HMM:NF014460.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5443019.1"
                     /translation="MNFATRALLELQETTLLATRAVAGIFKRPRYIAETIEQMDAIGV
                     GSLTIIILTGFFTGGVLTVQT"
BASE COUNT          293 a          347 c          287 g          272 t
ORIGIN      
        1 ccagtggtta atcccaacag ggcgacgcag tgggcaaccc atcgttcatt gtcaaaatcc
       61 gagcgacaac aattagccgc cgatcttcgg ttgcttacaa ctcgcgagga agacagtctt
      121 aatcttcttg gagatcgcat caatcaggag ttctagaggt aaacatgaga tcaattgtca
      181 gacaaatact ccccatctgc gcgttgctcg tcttaacaac gctaacagtc tttgcccagt
      241 ctccccagga ctctcaaacc aatgcgtcac cgccgggcgc cggaccggat atccttgaac
      301 agctccgttt gactccagat caggcccaga agatccgcca aatccaaagg caaacacgcg
      361 aagagcgggc ttccatcggt gatcgcttac gtgaatctaa tcgagctctc gaagacgcgc
      421 tttatgcgcc aacgcttgat gaagctttga tcgaacaacg aatccaggca gtcgccgctg
      481 cacaaagcgc tcagctacgc atgcgaattc aaactgaaat gcggattcga aggattttga
      541 acccggatca gctcgcggtc tggagtgatc tgcgtcttaa ggcgggagac gtgatccgta
      601 atcgccagga cagcgggcga ccgatacgcc cgggtgctga gggtttgcgg cctaatcagc
      661 gtaatggaat cgcgccactt gatcctcgtc gtaatgcgcc aatcagaaac cctcgtccat
      721 agcgataaaa tcatctccgt agctttggcc gatcagtcgt gactggtcgg ctcttttcgt
      781 ttgttccaga ctgctcatct tcacataacg ccgacactta ccgcttgacg cctcatgcac
      841 aatttgagca tcataggccg ctcttatcca aagtagtaga ccttaactgg tctcggcgtt
      901 ggccccgaca gacagcatat tagccaggca tccttgttca ctttcgccgc cgtcaagcta
      961 cttaacgctc tgccgcagtc gaatttagct tcaacacgct cccaatgaac tttgctacgc
     1021 gggccctgct ggaactgcaa gagacaacat tgctagccac gcgggcagtc gctggtattt
     1081 tcaaacggcc ccggtacatt gcggaaacca tcgaacagat ggacgcaata ggtgtcggct
     1141 cactgaccat cattatcctc acgggattct ttactggggg cgtcttaacc gtccaaact
//
LOCUS       DATCGC010000081         1023 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_34404, whole genome shotgun sequence.
ACCESSION   DATCGC010000081 DATCGC010000000
VERSION     DATCGC010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1023
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34404"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            286..>1023
                     /locus_tag="VIJ87_00820"
     CDS             286..>1023
                     /locus_tag="VIJ87_00820"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEY5443020.1"
                     /translation="MGPFLSPRVPPICPGNHLQTVVPTRKWPSRGWFRLAYRSILFLL
                     LMRSRLFARQTLSANSIIEFQASTPWALYKWYFLVAIGVFLIQAFLIVWLLISWLRRR
                     TSEMGVDDTEHHRLGEVVSSAPGIVCETQIDPSTGELKATFVSDYVEKMLGYTSSEWL
                     STPDFVLKIVHQLDRERIASEFKAIALHPEEKKLRFRCLTNEGSTRWVEAHLVPKLDP
                     NGKTVGFRGVTLDVTEQQLSEEAHRRNE"
BASE COUNT          238 a          254 c          267 g          264 t
ORIGIN      
        1 tgacggcgat catcaaacgc gcggtagccg cggcctcgac aaaacggcct ggtcagtgac
       61 atgggctagt tcagtcgggt tcgcggtccg cgcttttaat caaagttttg tgagctggat
      121 tagaagaaat tccaaggatg aggagctaat caaaagggca acggtggtat gatatttttc
      181 aattagtcag tcggagacac ctcgatcacc ctcctgagtc gggcgtcttt ttaggacggg
      241 ctgaaggatg cccaaaggca atttagaaac atcgagagtt ttatcatggg accctttctt
      301 tctccccggg tgcctcccat ttgtcccggc aatcatcttc aaactgtcgt tcccacaagg
      361 aagtggccat cccgtggttg gtttcgtctc gcttatcgct caatcctgtt cctgcttttg
      421 atgcgttcgc gtttgtttgc ccggcaaact ctttccgcca actcaataat agaattccaa
      481 gcctcgacgc cttgggctct gtacaagtgg tatttcctcg tcgcaattgg ggttttctta
      541 attcaagcat ttctaattgt gtggttactg atcagttggc tccgacgacg gacgtctgaa
      601 atgggggtcg acgatactga gcaccaccga ctgggtgaag ttgtctccag cgctcctgga
      661 attgtatgtg aaactcaaat cgatccatcg actggtgaac tcaaggccac cttcgttagc
      721 gattacgtcg aaaagatgtt gggttacaca tctagtgaat ggttgtcgac gcccgacttc
      781 gtgctcaaga tcgtccacca actcgatcga gagaggattg cttctgagtt taaagccatt
      841 gcgctacacc ctgaagagaa aaagctgcgc ttccgttgtc tgactaacga aggatcgaca
      901 cggtgggtcg aagcacacct ggtcccaaaa cttgatccga acggaaagac tgttggcttc
      961 cgcggcgtta cgctggatgt gactgagcaa cagctctcgg aggaggcgca caggcgaaac
     1021 gaa
//
LOCUS       DATCGC010000082         1320 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_67634, whole genome shotgun sequence.
ACCESSION   DATCGC010000082 DATCGC010000000
VERSION     DATCGC010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1320
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67634"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1320)
                     /locus_tag="VIJ87_00825"
     CDS             complement(<1..>1320)
                     /locus_tag="VIJ87_00825"
                     /inference="COORDINATES: protein motif:HMM:NF013124.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043531 - ADP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NB-ARC domain-containing protein"
                     /protein_id="HEY5443021.1"
                     /translation="GGCGKTRLALKVAESLTGKFADGIWFVDLSPLTETSRVVSAVAQ
                     VLGLREEANKDLGEIISTHIADKKILLVLDNCEHLRSSCAGLVDGLLDACPELHILAT
                     SREALNVQGERVVHLPPLAVPDPKSTLDLESAKGADAIKLFVERAQSVRSGFELTSAN
                     FESVAEICRRLDGIPLAIELAAARVKILSLEQTLAKLDDRFKLLFSRTMLPRHQTLRA
                     VIEWSYDQLSTDERRLLRALSVFAGGWTLALASTVVGNLDEFEMLELHSQLVDKSIVV
                     VGSDQSATQRYWLLETVRQFLLEKLIESGEEEGAREAHLNTMLALAERAYKERITNEE
                     RFTAELEGESDNMRVALECARTLDAEKYLDLVGALAWFWIIKTHLVEGRDHLKAALEL
                     SAVEPSRSSRARALWGAAQMFALQGETSEARAWVDEARSMSRDLGDT"
BASE COUNT          302 a          385 c          322 g          311 t
ORIGIN      
        1 gagtgtcgcc caagtctcgc gacatactgc gcgcttcgtc gacccaggcg cgcgcttctg
       61 atgtttcgcc ttgcagggcg aacatctgtg ccgcacccca aagtgctcgc gctcgggagg
      121 aacgcgacgg ttcgactgca gataattcga gcgcagcctt caaatggtcg cgtccttcaa
      181 caagatgggt tttgatgatc cagaaccagg caagagcgcc aaccaaatcc agatattttt
      241 cggcgtcaag ggtccgtgca cattcgagag caactcgcat gttgtcgctc tctccttcca
      301 gttcagcagt aaaacgctct tcatttgtta ttcgctcctt gtacgcgcgc tcggctagcg
      361 caagcatagt gttcaaatgc gcctcacgcg caccctcctc ttccccactt tcaataagct
      421 tctcgagtaa aaactgccgc accgtttcaa gaagccagta gcgctgcgtt gcactttgat
      481 cactcccgac aacgacgatc gatttgtcta ccagttggga gtgaagctca agcatttcga
      541 attcgtccaa attcccaacg acggttgagg ccaaagcgag agtccaaccg cctgcgaaca
      601 ctgacaaagc tcgcaacaat cgtcgctcgt cagttgagag ttggtcgtaa ctccactcga
      661 ttactgctcg aagagtttga tgtcgcggca gcattgtgcg actgaaaagt aatttgaagc
      721 ggtcgtcgag cttcgcgaga gtctgttcga gcgatagtat cttcacgcgc gctgctgcca
      781 actcgatcgc cagcggaatg ccatcaagcc ttctacagat ttcggcgact gactcgaaat
      841 tagcgctcgt taactcaaat ccgctgcgca cgctctgagc ccgttccacg aagagcttaa
      901 tcgcatcagc acctttcgca ctctcgaggt ccaaagtgga tttcggatcg ggaaccgcga
      961 gcggaggcag gtgcacgact ctttcgcctt gcacgttcaa agcctctcga ctcgtcgcta
     1021 atatgtgaag ttcaggacac gcatcgagta ggccatcaac taaccctgcg cacgaagaac
     1081 gcaggtgctc gcagttgtcg agaaccagta ggatcttttt gtcggcaatg tgagtgctaa
     1141 ttatttctcc aagatccttg ttagcttcct cgcgcaatcc aagaacctgg gccaccgcac
     1201 taacgactct gctcgtttcc gttaggggcg agagatcgac aaaccaaatg ccgtcggcaa
     1261 actttcctgt gagactttct gctactttga gtgcgagcct tgtcttacca caaccgccca
//
LOCUS       DATCGC010000083         1245 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_234155, whole genome shotgun sequence.
ACCESSION   DATCGC010000083 DATCGC010000000
VERSION     DATCGC010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1245)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1245)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1245
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_234155"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(142..>1245)
                     /locus_tag="VIJ87_00830"
     CDS             complement(142..>1245)
                     /locus_tag="VIJ87_00830"
                     /inference="COORDINATES: protein motif:HMM:NF019229.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRTAC1 family protein"
                     /protein_id="HEY5443022.1"
                     /translation="PESFEYAQNGGRKYLFHNLGNGSFEEVSQKLGIDTHRWALATIA
                     ADLRGTGHPDLFIANDYGISELYFNDGKQFREVGKQAGVGFSPKSGMNATVGDVLNTG
                     RYSIYVSNISEEGVLIQGNNLWMPKEGTSGDSLQYDNLARDMDVEIGGWSFGAQFGDL
                     NNDGNLDLYLVNGYVSADRAKNYWYDFSKITGGNSAIISDAANWPAMEGRSLSGYQQK
                     RVWLNDGSGKFVNVATAVGAGDIYDGRSVALVDLWNRGVLDVVVANQKGPLLVYKNTV
                     APDNKWIDFELEGSSSNRSAIGAQVKVFWNGKQQVQTVMGGSGFCAQNERRLHFGLGK
                     NPQVQKVEIRWPSGRSQTIDNPIVGQVNKVKES"
BASE COUNT          275 a          362 c          282 g          326 t
ORIGIN      
        1 ccgtttgtgg attcaattcc tttccgagcg actgttgtat aggttggtct tgaatcatct
       61 ccaaactgcc gtttggcgga ttgttcttcc tttcagtggt tcctgacttt gccagaggct
      121 ctaaaacata tcggacatta cttagctttc cttcactttg tttacctgac ctactatcgg
      181 attgtcgatc gtctgcgacc gacccgaggg ccaacggatt tctaccttct gcacctgcgg
      241 attttttcca agtccaaagt gcaaacgcct ttcgttctgc gcgcagaacc cgctgccgcc
      301 catcaccgtc tgcacttgct gtttgccgtt ccagaaaact ttcacctgtg cgccaatcgc
      361 actgcggtta ctcgagctac cctcgagttc gaagtcaatc cacttgttgt cgggcgcgac
      421 tgtgttcttg taaacaagca gcgggccttt ctgattcgct accacaacgt cgagcacgcc
      481 gcgattccac aaatcaacca gcgcgaccga gcgtccgtcg taaatatcgc cagcgccaac
      541 tgcagtcgcg acattcacaa acttacccga gccgtcatta agccacacac gtttttgttg
      601 ataaccagat aagctgcgac cttccatcgc gggccagttg gcagcgtcgg aaatgattgc
      661 actgttgccc ccggtgatct tagaaaaatc gtaccagtag ttcttcgctc gatcggccga
      721 gacatatcca ttgaccaggt agagatcgag attgccgtcg ttgttgagat cgccaaactg
      781 tgcgccaaaa ctccagccac cgatctcgac atccatatcc cgtgcgagat tgtcgtactg
      841 caaagaatct cccgaggtgc cttccttcgg catccaaaga ttgtttccct ggatcagcac
      901 gccctcttcg gaaatgtttg aaacatagat cgaatacctg ccagtgttca gcacatcacc
      961 aacggtcgca ttcattccgc tcttcggcga aaatccaacg ccggcttgtt tgccaacttc
     1021 gcgaaattgt ttcccgtcgt tgaagtagag ctcagagatg ccgtagtcgt ttgcgataaa
     1081 gagatccggg tgaccggtgc cgcgcaagtc cgctgcgatt gtcgctaacg cccagcgatg
     1141 tgtatcgata ccaagtttct gactgacttc ttcaaacgaa ccgtttccga gattgtgaaa
     1201 gagatacttg cgaccaccat tttgcgcgta ctcgaaactc tccgg
//
LOCUS       DATCGC010000084         1292 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_267478, whole genome shotgun sequence.
ACCESSION   DATCGC010000084 DATCGC010000000
VERSION     DATCGC010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1292)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1292)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1292
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_267478"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1292)
                     /locus_tag="VIJ87_00835"
     CDS             complement(<1..>1292)
                     /locus_tag="VIJ87_00835"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY5443023.1"
                     /translation="HYMTTIYAAHWVLPISNSPIENGAVAVEGTHIVAVGNRNIVTQE
                     YPSATIQDFGHAAIIPGLINAHTHLELTAMRGYLEDEESDFFAWLRKLTVARLERMTP
                     DDIRVSATWGACEAARAGITSVGDASDSALMSMLALKDVGLRGIVFQESFGPDPSLAT
                     DNFKSLKTKVAQLREVANELVRVGVSPHAPYTVCGPQLELIADYSLTEKLPLMMHAAE
                     SAAEESLLREGCGLFADGLAKRNIEWVAPRVSTIQYLKQRGILETQTLLAHCIRVDEQ
                     DVETLVESKATVAHCPKSNAKLGHGRAPFARFLERRLDVGLGSDSVASNNTCDILEEA
                     RFAALIARSDAMVSATEVLATATMGGSRCLGLAGEIGQLTKGSHADLAIVSLAGTHQQ
                     PSYDPTASLIFSSSGRDVVMTVVAGREVFREGRVVNVD"
BASE COUNT          304 a          367 c          316 g          305 t
ORIGIN      
        1 tcatccacat taacaactcg accctcgcga aagacttccc tgccagcaac gactgtcata
       61 acaacatcac gtcctgacga tgagaagatc aacgaggcag ttggatcata gcttggctgt
      121 tggtgtgtgc cggctaatga aacgatcgct agatccgcgt gggacccttt tgttagctgc
      181 ccaatctcac ctgcaagtcc aagacaccga gaaccaccca ttgttgctgt tgccagaact
      241 tcagtggcac ttaccatcgc atcggagcgc gctatcaacg cagcgaaacg tgcttcttct
      301 aaaatgtcac aggtattgtt actcgcaact gaatcgcttc ccaatccgac atcgagcctg
      361 cgctcaagaa atcgcgcaaa tggcgctcga ccatgtccta gcttcgcatt cgacttcgga
      421 caatgcgcaa ccgtcgcctt cgactcaacc aacgtttcga cgtcttgctc atcgacgcgg
      481 atgcaatgcg caagcagcgt ctgcgtttcg agaatcccgc gctgtttcaa atactgaatt
      541 gtcgacactc tcggcgccac ccattcaatg tttcgttttg ccagtccgtc cgcaaataag
      601 ccacagcctt cacgaagtaa tgattcctcc gcggcagact cagccgcgtg catcatgagc
      661 ggcaactttt ccgtgagcga ataatcagca atcaattcca gctggggtcc gcaaacggtg
      721 tacggcgcat gaggcgacac cccgactctt actagttcgt tagcgacttc gcgcagttga
      781 gcgaccttgg tttttagtga tttgaagttg tcagttgcaa gactcggatc cggtccaaac
      841 gattcctgaa aaacaattcc gcgcaagccc acatctttca acgccagcat actcatcaac
      901 gccgagtcgc tggcatcgcc aacggaagta atcccggctc gtgccgcttc gcatgcaccc
      961 catgtcgcag agacacgaat gtcatcaggc gtcattcgtt caagacgcgc gactgttagc
     1021 ttgcgcagcc aggcaaagaa atccgattct tcgtcttcga gataaccacg cattgccgtg
     1081 agttcaagat gcgtgtgcgc gttgattagt ccggggatga tcgctgcatg gccaaaatcc
     1141 tggatggttg cggaagggta ttcttgagta acgatgtttc gattgccgac ggcgacgatg
     1201 tgtgttcctt caaccgcaac tgccccattt tcgattgggg agttggaaat gggtaagacc
     1261 cagtgtgcgg cgtagatcgt cgtcatgtag tg
//
LOCUS       DATCGC010000085         1356 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_1068, whole genome shotgun sequence.
ACCESSION   DATCGC010000085 DATCGC010000000
VERSION     DATCGC010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1356)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1356)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1356
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1068"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..856)
                     /locus_tag="VIJ87_00840"
     CDS             complement(<1..856)
                     /locus_tag="VIJ87_00840"
                     /inference="COORDINATES: protein motif:HMM:NF024039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEY5443024.1"
                     /translation="MMNAFTIQVKAVKKIVDFAAASGVRAEDLYEAVEFDPRLLNDPD
                     NRIPFRLVVNLYEKAAQLSGDDNFGLHVGLSAKLNAFDVLGYAVLNSATLGEACARAV
                     RYHSIWTDGATFELDSTKQFVTLTYNYLDGSITSHRQDTEMTLAMVAALCLNLTEGKW
                     SAIKIQFTHREPRDTTEHRQLFRCPITYEAPTNSLCFATAYLSLPMAQADPVLCSVLD
                     RHAENLLSRFPPRNSIVDQSRSIIGHELRGGDPSLERVAAQLGLSARTLQRKLHEQHT
                     SHNELVDHL"
     gene            940..>1356
                     /locus_tag="VIJ87_00845"
     CDS             940..>1356
                     /locus_tag="VIJ87_00845"
                     /inference="COORDINATES: protein motif:HMM:NF014215.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HEY5443025.1"
                     /translation="MATRTALSCLIALLLSFSFNSKQGINSNPGVNLLLSTLPAGRDP
                     QRYKNYVEPRFSNVEPRSLYLPMRDGVKIAIQVVLPRDLAAGEKIPAILNMTRYWRAR
                     QDSQPEKFFPSHGYATVFVDARGTGASFGVWKAPFSQ"
BASE COUNT          327 a          337 c          343 g          349 t
ORIGIN      
        1 gcaaatgatc caccaactcg ttgtgggaag tatgttgctc gtgcaacttt cgctgcaacg
       61 tgcgtgcact caaacctaac tgggctgcaa cacgttccag tgaagggtca ccacctcgca
      121 attcgtgtcc tatgatgctt cgagactgat cgactatcga attacgcggt ggaaagcgtg
      181 aaagcaggtt ctcagcgtgt ctatcgagta cggagcacaa tactggatcc gcttgggcca
      241 tcggcaacga caaataggcg gtagcgaaac aaagcgagtt ggttggcgct tcgtaagtta
      301 tgggacagcg gaatagttgt cgatgttcgg tagtgtcacg aggctcccta tgtgtgaact
      361 gaatcttaat tgccgaccat ttcccttccg ttaggttaag acagagagcg gccaccatgg
      421 caagcgtcat ctccgtgtcc tgccggtgag aagtaatcga tccatcgaga tagttatagg
      481 tcagcgtgac aaattgtttt gtggagtcta gttcgaaggt tgcaccatca gtccagatcg
      541 agtgataacg aacagctcga gcacaggctt ctccgagtgt cgcgctattt agtactgcat
      601 agccaagaac gtcgaacgca ttcagctttg cgcttaaccc aacatgcagt ccaaagttat
      661 cgtcaccact gagttgtgcg gccttttcgt aaagatttac aacaagacga aaagggattc
      721 ggttgtccgg atcgtttagt aggcgcggat cgaactctac agcttcatac aaatcttccg
      781 ctcttacgcc cgaagcagcg gcaaagtcca ctatcttttt taccgctttc acttgaatgg
      841 taaaggcgtt catcattgta tgttcagtta acactcgacg gcacaaggcg tcaatttctt
      901 gtcgcccaga gtcaacggga ttcgcttaaa atatagcgta tggccacaag aacagctctc
      961 tcttgtctaa tagctctgtt actttcattc tcattcaatt cgaaacaggg catcaattcg
     1021 aacccaggcg tcaaccttct tctttcgacg ttgccggccg gtcgtgatcc gcaacgttac
     1081 aagaactatg ttgagccacg cttctctaac gttgagccgc gttcgcttta tttgccgatg
     1141 cgtgacgggg taaagatcgc tattcaggtg gtgctgccga gagacctggc tgcaggcgag
     1201 aaaatcccgg ccatactaaa catgacgcga tactggcgag cgcgacaaga ctcacagcct
     1261 gagaaattct ttccgtcgca tggttacgca actgtttttg ttgacgcgcg cggtactggt
     1321 gcgtcgttcg gtgtttggaa ggcgcctttc agccag
//
LOCUS       DATCGC010000086         1620 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_467184, whole genome shotgun sequence.
ACCESSION   DATCGC010000086 DATCGC010000000
VERSION     DATCGC010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1620
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_467184"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..372
                     /locus_tag="VIJ87_00850"
                     /pseudo
     CDS             1..372
                     /locus_tag="VIJ87_00850"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ester cyclase"
     gene            369..914
                     /locus_tag="VIJ87_00855"
     CDS             369..914
                     /locus_tag="VIJ87_00855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443026.1"
                     /translation="MRRTIHWSMVAGLVLICLAVCITSTSITVLEPEVRARELATSLC
                     AKEEKVVFSCTLKNAKVVSLCSSAKLSKTEGYLQYRFGGSGKIDLEYPKEHEAAQKAF
                     KYSHYFRAQVDLTEISFTIDGYVYTVFDNFNGEEKPAISEEGISVTPTGNKKAVTHIC
                     RGRAKVDFSDISETLPNESSP"
     gene            complement(924..1604)
                     /locus_tag="VIJ87_00860"
     CDS             complement(924..1604)
                     /locus_tag="VIJ87_00860"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY5443027.1"
                     /translation="MNPLVTTFQRRFARMRRRQKVGRAYDMALEIARILKPGAVVLDV
                     GCGTGYIAHHLSALLGTSVVGLDITTHASSYIDYRRFNGRHFPVADQSFDAVLLCYVL
                     HHAQDARLLLDEARRVLRDGGVSIIYEDNPACWWDKAICWTHNLQWQRRTGHCTFQLE
                     DGWERMFAVAGFRVVKRRQLSRWRNIGHPVSRNFFVLNADPNTGSSTPADIQEPLAGY
                     AREIPARA"
BASE COUNT          419 a          392 c          426 g          383 t
ORIGIN      
        1 gtatggaaca aggggaacac cgaagccatc gctgagatgt tgaccgacaa caccgtgatt
       61 cacgggctgg ctgataccag cggcgtggaa atcacagggc ccgacgcatt cagagaattt
      121 cacaaacagt ttcgggcagc atttggaggt ctcgaggtaa ctgttgaaga caccattgcc
      181 gaaggagaca aggtcgtcgc tcgttgttgt gttcgaggaa aacacagtgg cgattcactt
      241 ggattcgctc ccacctaggc agacgttgaa tttacgggaa tggcgattgt cagagtaagc
      301 aacggaaaaa tagttgaggc ttggaacaac ttcgacttca tgaaaatgag caggcagctt
      361 ggcgttttat gagaaggaca attcactgga gcatggtggc ggggctcgtt ctgatttgtt
      421 tggcagtttg tattacgtca acttcaatca ctgttttgga acccgaggtg cgagctcgtg
      481 agctggcgac ttctctttgc gccaaggaag agaaagtggt ctttagttgc acgctaaaga
      541 acgccaaggt ggtttctcta tgttcctcag cgaagctcag caagactgaa ggatacctac
      601 agtatcgctt tggcggatcc ggcaagatcg atcttgagta tccgaaagaa catgaagcgg
      661 ctcaaaaggc atttaagtat agtcactact ttcgagccca ggttgatctc actgaaataa
      721 gttttacgat tgatgggtat gtctacaccg tcttcgacaa cttcaacggc gaagagaagc
      781 ctgcgatctc tgaagaagga attagtgtaa cgcctaccgg taacaaaaag gccgtcaccc
      841 atatttgccg aggccgcgcg aaagtcgact tcagcgacat atcggaaaca ctacccaatg
      901 aatcttcgcc ctaagggctg agatcacgcc ctcgctggta tttctcgagc gtagccggcc
      961 aggggttctt gaatgtctgc cggggttgaa gaacccgtgt tgggatctgc atttaagaca
     1021 aagaaattgc gcgagacagg atgcccgatg tttctccaac gcgagagctg ccgccgtttc
     1081 acgaccctga aacccgctac agcaaacatt ctttcccaac catcttcgag ttgaaatgta
     1141 cagtgacccg ttcgtcgctg ccattgaagg ttgtgagtcc aacagatcgc cttgtcccac
     1201 cagcaagcag ggttgtcttc ataaataatc gacacgccac cgtctcgtaa tacccgtcgt
     1261 gcttcgtcta acagtagtcg tgcgtcctga gcgtgatgaa ggacgtagca caataacacc
     1321 gcatcaaaac tttgatcggc aactggaaag tggcggccgt taaatcgtcg gtagtcgatg
     1381 tagctgcttg cgtgagtggt tatatctaat ccgacaaccg acgttccaag tagcgcgctt
     1441 aaatggtggg cgatgtatcc ggtgccgcaa ccaacgtcta acaccacagc accaggcttc
     1501 aatattcgcg caatctcaag tgccatgtcg taagcgcgac ccactttttg tcgacgacgc
     1561 atgcgtgcaa atcggcgctg gaatgtggtc acaagaggat tcatctatgc ggttactttg
//
LOCUS       DATCGC010000087         1559 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_434052, whole genome shotgun sequence.
ACCESSION   DATCGC010000087 DATCGC010000000
VERSION     DATCGC010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1559
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_434052"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..724
                     /locus_tag="VIJ87_00865"
     CDS             <1..724
                     /locus_tag="VIJ87_00865"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF013206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HEY5443028.1"
                     /translation="SDFVKVPVAGLIDKAYAAKLRSNISTERASTSAEVRAGRPAGYE
                     SEETTHFTVVDAEGNAVANTYTLNNSYGSAAVAKGTGMLLNDEMDDFAAKPGTPNMYG
                     LIQGERNAVAPRKRPLSAMTPTIVLRKDGSFWFTVGSPGGPTIINTVLCVITNVIDFD
                     MNIQQAIDAPRIHHQWLPDELVGEPLGLSGDTQKALASRGHALAKQRTLGDAEGIMIE
                     EKTGVRLGATDPRRSDGAAIGY"
     gene            complement(766..1083)
                     /locus_tag="VIJ87_00870"
     CDS             complement(766..1083)
                     /locus_tag="VIJ87_00870"
                     /inference="COORDINATES: protein motif:HMM:NF037832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5615 family PIN-like protein"
                     /protein_id="HEY5443029.1"
                     /translation="MIRISHGVFRQLADIYPDSVHVAEVGLANSPDLSVWQYARENGY
                     ALVSKDSDFQQWSLLHGAPPKFIWLRVGNCTRARIESILRKHSVAIHTFDLDDSKSHL
                     MVP"
     gene            complement(1080..1319)
                     /locus_tag="VIJ87_00875"
     CDS             complement(1080..1319)
                     /locus_tag="VIJ87_00875"
                     /inference="COORDINATES: protein motif:HMM:NF016167.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF433 domain-containing protein"
                     /protein_id="HEY5443030.1"
                     /translation="MDYSKIIRIEPGKRGGKPNIRGTRMTVTDVLEYLAGGMTEEEIL
                     ADFPDLTSEDIKSCLAFAADRARKLATLPEHETAI"
     gene            complement(1375..>1559)
                     /locus_tag="VIJ87_00880"
     CDS             complement(1375..>1559)
                     /locus_tag="VIJ87_00880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443031.1"
                     /translation="FRKRLRGVCQTTLGNGSHQVETASRSIVFVARDYVSWASLEAQP
                     AVNAGEKFLFFVGKGV"
BASE COUNT          376 a          409 c          417 g          357 t
ORIGIN      
        1 ttctgatttc gtaaaagttc ccgttgccgg attgatcgac aaggcatatg ccgcaaaact
       61 tcgttcgaat atcagcactg agcgcgcgtc gacgagtgcc gaggttcgcg ccggtcgacc
      121 agccgggtat gaatcagaag agaccaccca ctttactgta gtcgatgcgg aaggaaacgc
      181 tgttgccaat acctacacgc tcaataactc gtacggctcg gccgcagtcg caaaaggcac
      241 cggaatgctg ttgaacgatg aaatggacga cttcgccgcg aagccaggta caccgaacat
      301 gtacggcctg atccagggtg aacgcaatgc ggtcgctcct cgaaagcgtc cgctgtcagc
      361 aatgactccg acgattgtcc tacgtaagga tgggagtttt tggtttactg ttgggagtcc
      421 cggtggaccg acaattatta acaccgtgct gtgtgtcatc acgaacgtca tcgacttcga
      481 tatgaacatc cagcaagcga tcgatgcacc acgcattcat caccagtggt tgccggatga
      541 gctggttggt gagccgctag gtctctccgg cgacactcaa aaagcattgg cgtcgcgtgg
      601 ccatgcgctc gccaagcaaa gaactcttgg cgatgctgag gggatcatga ttgaggagaa
      661 gacgggagtg cggttgggtg cgacggatcc cagacggagc gacggcgctg cgattggata
      721 ttgaccttta agttgatcaa gagacctgga ggagtccaac gtgaatcacg gcaccatcag
      781 gtgtgacttg gaatcatcaa gatcaaaagt gtgtatggca acggaatgct ttcgcagaat
      841 actctcgatc ctcgccctgg tgcagtttcc gactcgcagc cagatgaact tcggcggagc
      901 accgtgtagc agactccact gctgaaagtc agagtccttg gaaacaagtg cgtaaccatt
      961 ttcccttgcg tattgccaca cggagaggtc tggagaattg gcgagcccca cttcggcgac
     1021 gtgtacactg tctggataga tatcagccag ttggcggaag actccgtgag agattctgat
     1081 caaatagcag tttcatgctc tggcagcgtg gctagtttgc gcgctctgtc agcagcaaat
     1141 gccaaacacg atttgatatc ttcagatgtg aggtcgggaa aatctgcgag gatttcttcc
     1201 tcggtcattc ccccggcaag atattcgagc acgtcagtga ccgtcatcct cgttccgcgg
     1261 atattgggtt ttccaccccg cttccccggt tcaattcgaa tgatcttgct ataatccatg
     1321 actgaataat aacaaaacca attcatcttg cataagtgaa cccgcctcgt gatctcagac
     1381 acctttgccc acgaagaaca gaaacttctc gcctgcattc actgcgggct gtgcctcgag
     1441 gcttgcccaa cttacgtaat cacgggcgac gaaaacgatg gacctcgagg ccgtctctac
     1501 ctgatgcgag ccgtttccga gggtcgtttg gcaaacacct cggagtcttt ttctaaaca
//
LOCUS       DATCGC010000088         1343 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_234191, whole genome shotgun sequence.
ACCESSION   DATCGC010000088 DATCGC010000000
VERSION     DATCGC010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1343)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1343)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1343
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_234191"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..293)
                     /locus_tag="VIJ87_00885"
     CDS             complement(<1..293)
                     /locus_tag="VIJ87_00885"
                     /inference="COORDINATES: protein motif:HMM:NF012974.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DnaB-like helicase N-terminal domain-containing
                     protein"
                     /protein_id="HEY5443032.1"
                     /translation="MASPDPIRDQPFERALPNSAEAERAILGAILLDNGLISQAIEQL
                     KPEDFYVPSHRRIFVAMIALFEHGSEINSILIGEELRKENSLDSVGGFTFITNL"
     gene            complement(590..1129)
                     /gene="rplI"
                     /locus_tag="VIJ87_00890"
     CDS             complement(590..1129)
                     /gene="rplI"
                     /locus_tag="VIJ87_00890"
                     /inference="COORDINATES: protein motif:HMM:TIGR00158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HEY5443033.1"
                     /translation="MAHTKVLLREDVDDLGARGEIVRVRAGYARNYLLPRNLAVEAST
                     GNVKGIEAERAALLKKEAKERSTAEAQSQKMSSLVLEFKRKSGEQGALYGSVTSMDVA
                     EALKEKGYEIDRHRIHLREPLKRLGEYSVPVRLHREVTIDLQVKVQPEGEVIVGHLSP
                     EEEANLAKASETEETESSE"
     gene            complement(1147..>1343)
                     /gene="rpsR"
                     /locus_tag="VIJ87_00895"
     CDS             complement(1147..>1343)
                     /gene="rpsR"
                     /locus_tag="VIJ87_00895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016292916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HEY5443034.1"
                     /translation="VCRFCIDKVDLIDFKDVRLLLNYLPERGKILPRRISGNCATHQR
                     MLAEAIKRARNIALLPYTTD"
BASE COUNT          314 a          354 c          312 g          363 t
ORIGIN      
        1 aggttagtaa taaaagtgaa acctcccact gagtccaaag agttttcttt tcttagttcc
       61 tcaccgataa gaatcgagtt gatctcagaa ccgtgttcaa agagcgcaat catcgccacg
      121 aaaattcgac gatgcgaagg cacgtaaaag tcttctggtt tcagctgctc gattgcctgg
      181 ctgattaacc cgttgtcgag aaggattgca ccgaggattg cgcgttcagc ttcagcgcta
      241 tttggtagcg ctcgttcgaa cggttggtcg cgaattggat caggagaagc cataaagaat
      301 ttcaaatttc agattgcaga tttcagattg actcgtcgct ataaccgaca ccctttagtg
      361 acgcccatcg ccgtaaccac aacgctcttc cgggaccgca ggcgtcctcg cctgcttact
      421 cggcaaaacg gttccctaat accaatattt gaactgacga attttcgttt cgcaatggga
      481 ctgcggggat gacactgaaa gcattggata caaaataacg ctgcatgttt gctaattagc
      541 acgcagcgtt atctcaagca atgaaattag ggttttatct gaattcgaat tattcagaac
      601 tctctgtttc ttccgtttcg cttgcctttg ccaggttcgc ttcttcctcc ggactcaagt
      661 gcccaacaat gacttcacct tccggctgaa ccttgacctg caaatcaatc gtgacttcac
      721 gatgcaaacg tacgggcacg ctgtattcgc ccaggcgttt caacggctcg cgcagatgaa
      781 ttcggtggcg atcaatctca tagccctttt ctttgagagc ctccgcaacg tccatggaag
      841 taaccgaacc atagagtgcg ccttgttcgc cggacttgcg cttaaactca aggacgagcg
      901 aactcatctt ttgagactga gcttctgccg ttgaacgttc cttggcctct ttcttcagta
      961 gggcagctcg ttcggcttca attcctttga cgtttcccgt ggaggcttcc acggcgagat
     1021 tgcgaggcaa cagataattg cgagcatatc cagctcgcac tcgaactatt tcgccgcgcg
     1081 ctcccaagtc gtccacatct tcgcgcaaaa gtactttagt gtgtgccatt agctttctcc
     1141 tttcccttag tccgtggtgt acggtagcag cgcgatgttg cgtgctcgct tgattgcttc
     1201 cgccagcata cgctggtgcg tagcacaatt gcccgagatg cgtctcggca agatctttcc
     1261 acgttcggga aggtagttca ggagtaacct gacgtctttg aaatcgatga gatccacttt
     1321 gtcgatacaa aaccgacaaa cgc
//
LOCUS       DATCGC010000089         1455 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_1101, whole genome shotgun sequence.
ACCESSION   DATCGC010000089 DATCGC010000000
VERSION     DATCGC010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1455)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1455)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1455
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1101"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(159..>1455)
                     /locus_tag="VIJ87_00900"
     CDS             complement(159..>1455)
                     /locus_tag="VIJ87_00900"
                     /inference="COORDINATES: protein motif:HMM:NF012652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CpaF family protein"
                     /protein_id="HEY5443035.1"
                     /translation="PGANSSAQDGNAQKFQEMKARLHRALINRMDLTKLGTLAPEQAN
                     AEVTRLAESVLAQEGLPLSALERERLVKDVQHELFGLGPLEPLLADPTVSDILVNSHS
                     TIYVERRGKLEWTNVAFKDDEHLMRVIERIVSSVGRRIDESSPMVDARLKDGSRVNAI
                     IPPLAIDGPILSIRRFGAEPLKMSKLIEHKALTKDIADMLQMCVNARLNVLISGGTGA
                     GKTTLLNALSAFIPETERIVTIEDSAELQLQQPHVVRLETRPPNIEGKGEVTQRDLVK
                     NALRMRPDRIVIGEVRGGEAIDMLQAMNTGHDGSLTTIHANTPRDALSRVETMIQMTG
                     MRLSGQAMRQQIASALDLVLQVARMSDGSRRVTSISEITGMEGDIITMQEIFMYERSG
                     VDQQGVVLGRFRPTGVRPRFAEKLKACGMQLPRVFFEEI"
BASE COUNT          331 a          386 c          382 g          356 t
ORIGIN      
        1 ttccacgtct tccgtgtgtg atgagtgaag cagagcgtcg gcaagccttt tttgtaggcg
       61 agcacgcttt gcatcagaac cttgcgtggc caggagaaaa gcgcccaaca cgagaaacag
      121 agcgaacaag aatactagga atggtatgag catgtgcgtt agatctcctc gaagaacaca
      181 cgtggcagtt gcataccaca ggctttcaat ttctcggcaa aacgcggtcg aacaccagtg
      241 ggccggaagc ggccgagtac cactccttgc tggtccaccc cactgcgttc gtacatgaaa
      301 atctcctgca tcgtgatgat gtcgccttcc attccggtta tttcggagat tgaggtaact
      361 cgacgcgatc catcggacat acgtgcgact tgcaacacca aatcaagcgc cgaagcaatc
      421 tgttggcgca ttgcctggcc agacaaacgc attcccgtca tctgaatcat cgtttcaacg
      481 cgggatagag cgtcgcgcgg tgtgttggcg tggattgtgg ttaaacttcc atcgtgacca
      541 gtgttcatag cctgcaacat atcgatggct tcaccgccac ggacttcacc tattacgatt
      601 cggtcgggtc gcatacggag ggcgttcttt accaggtcgc gttgagttac ttcgccctta
      661 ccttcgatat ttggtggtct cgtttcgagc cggaccacgt gcggctgttg tagttgcaat
      721 tcggccgaat cttcaatagt aacgatgcgc tcagtttctg ggatgaaagc agacagagcg
      781 ttgagtaagg tggttttgcc ggcgccagta cccccggata tcagcacatt gagtcgcgcg
      841 ttcacgcaca tctgcagcat atccgcgatg tctttggtga gcgctttatg ctcgatgagc
      901 ttgctcattt tgagcggttc agctccaaat cggcggattg agagaatcgg cccatcaata
      961 gcgagcggcg gaatgatcgc attgacacgg gagccatctt tgagacgggc atcgaccatt
     1021 ggcgaagact cgtctatgcg tcggcccacg gaggacacga ttcgctcgat gactcgcatc
     1081 aggtgctcgt catccttaaa agctacattg gtccattcga gtttgcctct acgctccaca
     1141 taaatcgtac tatgcgaatt tacgagaatg tccgagactg ttggatcagc aagcaacggc
     1201 tcgagcggtc cgaggccaaa gagttcgtgc tgaacatctt taactaaacg ctcacgttcc
     1261 aaagctgaaa gcggtagtcc ctcctgagca agcacactct ctgctaatcg tgtaacttca
     1321 gcatttgcct gctctggcgc tagagtgccc agcttagtca aatccattcg gttaatgaga
     1381 gcccgatgca gccgagcttt catttcctgg aacttttgag cgttgccatc ctgcgcagat
     1441 gaattcgccc ctggg
//
LOCUS       DATCGC010000090         2306 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_334042, whole genome shotgun sequence.
ACCESSION   DATCGC010000090 DATCGC010000000
VERSION     DATCGC010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2306)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2306)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2306
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334042"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..381
                     /locus_tag="VIJ87_00905"
     CDS             <1..381
                     /locus_tag="VIJ87_00905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443036.1"
                     /translation="RNGVTADFPLSDMRPSCRGDHTGRSWVSERQAKEALTKVPQTAV
                     CGYFKSSLLDQANLLGEVVPVPILSGKGWTLTIHKLPFGGFLQEPLKHIGQRQSAMGN
                     RQSAMPCGSLIRISTQEHQRCPTF"
     gene            366..689
                     /locus_tag="VIJ87_00910"
     CDS             366..689
                     /locus_tag="VIJ87_00910"
                     /inference="COORDINATES: protein motif:HMM:NF012417.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEY5443037.1"
                     /translation="MSYFLNWRDFEGSKPEKFFKSTLWQGEHVMIGLNCLEPNQTQPV
                     HAHAGADKFYFVLGGTGSFTVGEEVRTVEAGSVVIAPAGIPHGVTNSGAERLSLLVAI
                     APGIK"
     gene            686..2176
                     /locus_tag="VIJ87_00915"
     CDS             686..2176
                     /locus_tag="VIJ87_00915"
                     /inference="COORDINATES: protein motif:HMM:NF012503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016830 - carbon-carbon lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-dependent decarboxylase"
                     /protein_id="HEY5443038.1"
                     /translation="MSTNQLRTKSALDVSPEALNEISEQATRLVFDYFQHITERGVVA
                     KNHAGKTKSEINAQLELEGVPLEKLIDECQTMFDLSRHNGHPRFFGYVASPSTPIGAY
                     ADLIASALNANITCWRSGPAGTEIEKMVVAWLGSLIGYHDHAHGLLTSGGSMANLIAL
                     LVANRRKAGNDVARVGLWNSGPPMTVYASDEVHMSIAKAADILGFGRDQVRGVKCDDR
                     LRIDVRHLRERITDDLAAGLRPFCVVASAGTTNTGAVDPLKDVAAVAREFDLWFHVDG
                     AYGAPGVLDPRKKDLFAGLGLADSVSLDPHKWLYVPVDAGCLLFRDEATAKAAFNTDE
                     ADYIKVHGLVDDETFAYWDYGVELSRRFRALKVWLTLRYYGIRRIAEAISGDIALAEY
                     FGEVVEHADDFELLAPVELSICCFRYVPPSLKRADRPSADVDAELNRLNERILAAIQK
                     GGRAYVSNATVNGRFALRACITNFRTTKADIDETIEVIREAAHDTL"
BASE COUNT          539 a          548 c          664 g          555 t
ORIGIN      
        1 agaaatggag taactgctga tttcccgttg tccgatatgc gtccgtcttg tcgcggcgat
       61 cacactgggc gctcttgggt gagtgagcga caagctaaag aggctcttac aaaagtccca
      121 caaacggcag tttgtgggta cttcaagtcc agcctattag accaagcaaa cctacttgga
      181 gaagttgtcc cagtgcctat tctgtccggc aaaggttgga ctttaacaat ccacaaactg
      241 ccgtttggag gatttttgca agagcctcta aagcatatcg gacagcggca atcggcaatg
      301 ggcaatcggc aatcggcaat gccttgtggt agtttgattc gcatctcaac tcaggaacac
      361 caacgatgtc ctactttcta aactggcgcg actttgaagg ctccaagccg gaaaagtttt
      421 tcaaatcgac gttatggcag ggtgagcatg tgatgatcgg gctcaattgt ctcgagccaa
      481 atcagacgca acctgttcac gctcacgctg gcgctgacaa gttctatttc gtacttggtg
      541 gaacgggtag cttcacagtc ggcgaggaag ttagaactgt cgaagcaggt tcagtggtca
      601 ttgcgcctgc tggaattcca cacggcgtca ccaatagcgg cgctgaacga ctttcattgc
      661 tagttgcgat cgctcccgga atcaaatgag cacgaatcag ctgcgcacca aatcagcgct
      721 cgatgtttct ccggaagcgt tgaacgagat ttccgagcag gccacaaggt tagttttcga
      781 ctatttccag cacatcaccg agcgcggtgt ggtagcgaag aaccacgccg gcaaaacgaa
      841 aagcgaaatc aatgcacagc tggagttgga aggagtgccg ctcgaaaagc tgatcgacga
      901 atgtcaaaca atgttcgatc taagccggca caacggccat ccacgattct tcggttacgt
      961 cgcttctcct tcgacgccaa tcggtgcgta tgcagatcta attgcttcag cgctgaatgc
     1021 aaacatcact tgttggcgtt ccggacctgc tggtaccgag attgaaaaga tggtcgttgc
     1081 gtggttgggt tcgttgattg gctatcacga ccatgcgcat ggactgctga cgagtggtgg
     1141 gtcgatggcg aaccttattg cgttgcttgt tgccaatcgg agaaaagccg gaaatgacgt
     1201 ggcccgcgtt gggttgtgga actcaggtcc gccaatgact gtctacgcgt ccgacgaggt
     1261 tcacatgtcc atcgcaaagg ctgctgacat cttgggattc gggcgcgatc aggtgcgcgg
     1321 agtgaagtgc gatgatcgac tccggattga tgtgcgtcac ttgcgagaac gaatcactga
     1381 cgacctggcg gccgggttgc gaccgttttg cgttgtcgca agcgcgggta caactaacac
     1441 tggagcagtt gatccgctca aagacgtagc ggctgtggcg cgcgaattcg atctttggtt
     1501 tcacgtggat ggcgcatatg gtgcgccagg tgttttagat ccgcgaaaga aggatttgtt
     1561 tgcagggctc ggcctggccg attcagtttc actcgatccg cataagtggt tatatgtgcc
     1621 ggttgatgcc ggttgtcttt tgttccgtga tgaggcgact gctaaagcgg cattcaacac
     1681 tgatgaagct gactacatca aggtacatgg gttggtcgac gacgaaacgt ttgcctattg
     1741 ggactacgga gttgagttgt cacgaaggtt tcgtgcgctg aaagtatggt taacgttgcg
     1801 ttattacggc attcggagaa ttgcggaggc gattagtgga gacattgctt tggcggaata
     1861 cttcggggaa gttgttgagc acgccgacga ttttgaattg ttagcacccg tggaattgag
     1921 tatctgctgt tttcgatatg tgccgccaag tttaaagcgg gccgacagac caagcgctga
     1981 tgtggatgcg gaactaaatc gattgaacga acgcatcctg gccgcgatcc agaaaggcgg
     2041 gcgggcttat gtttcgaacg cgacagtgaa tggtcgattt gcattacgtg catgcataac
     2101 gaatttccga acgactaagg cggacatcga tgagacgata gaagttatcc gagaagcagc
     2161 tcacgatacc ctttagtagc tactcgcgct cgagtgatcg ctcttctggg accgcaggcg
     2221 tcctcgcctg cactcgttgc cacagagtcg accttagctg gatagcaggc gaggacgcct
     2281 gcggtcccag aagagcgcgc ccatta
//
LOCUS       DATCGC010000091         1824 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_67702, whole genome shotgun sequence.
ACCESSION   DATCGC010000091 DATCGC010000000
VERSION     DATCGC010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1824)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1824)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1824
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67702"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            369..1220
                     /locus_tag="VIJ87_00920"
     CDS             369..1220
                     /locus_tag="VIJ87_00920"
                     /inference="COORDINATES: protein motif:HMM:NF024091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5443039.1"
                     /translation="MFILLRLELEKLFRAKSFYLSFTVLVAFVALMLWGFYTYAARKT
                     GGKAVEQFKYTYESKQYFNGLTFALYSVLFSFTLLLPIFVSMSAGSQIASEARSGTLR
                     MICTRPISRASLILSKFLVSAFHAGLLLTFFIVLNLVVGLIFVGWGNLELYPGPLNLV
                     DAPGKIMRDEALMRFAYAALSGTWALLVIVSLALLCSVVFDSPAQAVVMTIAVYLALY
                     IVGRVEFFDQLRPYFFTTDMDFWRDVFKPDIPWQSLWHYACVCGAYTIGLLLTTLFIF
                     ERKDIVT"
     gene            1237..>1824
                     /locus_tag="VIJ87_00925"
     CDS             1237..>1824
                     /locus_tag="VIJ87_00925"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HEY5443040.1"
                     /translation="MLLVLFCLMIVGAVHFAEPREPEQRSSSAEDIHSLRLLTWNIGY
                     AELEDDTRAHDKDLPAVAELILRQEPDAVALQELTGNAQLKVLLGLLNGKYRGAVAQQ
                     GNGDRFEAVLVKDIEAKFIPIAAGGRYALGASFQPGSDKHEILLLSAHADAFNAAQRR
                     IYTEALIDWAQSRAQSSEVFIAGDFNFELKAANQTN"
BASE COUNT          403 a          462 c          452 g          507 t
ORIGIN      
        1 agcgtgtgat ctccaacgcg cgctttacaa gtctcgtgac gttcttcaat ctgaactcac
       61 ttccctctaa ctgagtgtgc tcgcaccacc cagctcgcgg ttaccgcagc gacctcgcct
      121 tgttctgcta aagaagaaat cttccttact gataagacaa acgagacctg tccagatcga
      181 catcctctca gaaattgttc ttccggttac ggagccccgc aaatactcct gactagctgg
      241 tctgtgaagc gacaaatata cgggttacgg ccgcaatgat ccctgtggca agccccgttg
      301 tcatcctagt ctcatgcgct aatatggcga acaacagtcg acgtgcacac gttaaagtta
      361 agtggaatat gtttatcctg ctaagactag aactcgaaaa gttgtttcgt gcgaagagct
      421 tttatctttc attcacggtg ctggttgcgt ttgtggcgct gatgctctgg gggttctaca
      481 cctatgccgc tcgaaagaca ggtggtaaag ccgttgagca gttcaaatac acctacgaat
      541 ccaagcaata cttcaacgga ctaactttcg ccctctactc ggttcttttc tcttttacct
      601 tgttacttcc aattttcgtg tccatgagcg ccggttcaca gatcgcgagt gaagcgcgct
      661 cgggcacgct gcgaatgatt tgtacgcgtc cgatctcccg cgcctcgctg atcctttcga
      721 agtttctggt aagtgccttt cacgcgggtc tcctattgac gttcttcatt gttttgaatt
      781 tggttgtcgg cctgatattc gttggttggg gcaacctcga gctttatcct ggtccgctta
      841 atctcgtcga tgcgcccgga aagattatgc gcgatgaggc acttatgcgg tttgcctacg
      901 ccgcactgtc aggcacctgg gcccttctag ttatcgtttc tttagcactg ctttgttcag
      961 tggtgttcga ttcgccggca caggcagtcg tcatgaccat cgcggtgtat ttggctctct
     1021 atatcgttgg ccgagtagag ttcttcgacc agctgcggcc ctactttttc accaccgaca
     1081 tggacttctg gcgtgacgtg ttcaagccgg atattccttg gcaaagtctg tggcattacg
     1141 cctgtgtctg cggtgcttat acgatcggct tattgttaac cacgctgttt atcttcgagc
     1201 ggaaggacat tgtgacgtga aatgtggctg aaggtcgtgt tactcgtcct cttctgtcta
     1261 atgattgtgg gtgcggtcca ctttgcagag ccgcgtgaac ccgaacaacg aagttcatcg
     1321 gccgaggata tacattcgct tcgtctgctc acctggaaca tcggctatgc cgaacttgag
     1381 gatgatacac gcgcgcatga caaagatttg ccggcagtag cggaattgat cttacgccag
     1441 gagcctgatg cagtagccct tcaggagtta actggcaacg cacaattgaa agtattgctc
     1501 ggtttgttga acggaaaata tcgaggcgca gtcgcgcaac aaggaaatgg agatcgcttc
     1561 gaagcggtac tggttaaaga tattgaagcg aaatttattc ccatagctgc gggtggtcgt
     1621 tacgctcttg gagcttcatt tcaacctggc agcgataaac acgaaatact tcttttgagc
     1681 gcacacgccg atgcgttcaa tgctgctcag cgaaggatat acactgaagc gctaatagat
     1741 tgggctcaaa gtcgagcgca atcgtctgag gttttcatcg ctggcgattt taactttgaa
     1801 ctaaaagccg ccaaccagac aaat
//
LOCUS       DATCGC010000092         1873 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_34505, whole genome shotgun sequence.
ACCESSION   DATCGC010000092 DATCGC010000000
VERSION     DATCGC010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1873)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1873)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1873
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34505"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..416
                     /gene="ccsA"
                     /locus_tag="VIJ87_00930"
     CDS             <1..416
                     /gene="ccsA"
                     /locus_tag="VIJ87_00930"
                     /inference="COORDINATES: protein motif:HMM:NF013725.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HEY5443041.1"
                     /translation="SLVTGAFWGKPTWGTWWVWDARMTSTLILLFLYIGFISLQSSID
                     DPRRADRAGAVLALVGVINVPIIYFSVQWWNTLHQGATIRILQKPTIHGSMLWAMLIM
                     LAACWLYSVAVVLIRVRCIIVEREQNANRFVEATV"
     gene            413..592
                     /gene="ccmD"
                     /locus_tag="VIJ87_00935"
     CDS             413..592
                     /gene="ccmD"
                     /locus_tag="VIJ87_00935"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0015886 - heme transport [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmD"
                     /protein_id="HEY5443042.1"
                     /translation="MNWPDLSMGGYGFYVWGSYLFALLAIVWELVTLSYRRKSREQEK
                     AAPEVLRGTTNETTS"
     gene            576..1034
                     /gene="ccmE"
                     /locus_tag="VIJ87_00940"
     CDS             576..1034
                     /gene="ccmE"
                     /locus_tag="VIJ87_00940"
                     /inference="COORDINATES: protein motif:HMM:NF009731.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017003 - protein-heme linkage [Evidence
                     IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HEY5443043.1"
                     /translation="MKRRHKRITFILVGLAGLGIATYFVASAFRNNLVFFFSPTQVAA
                     KEAPINRTFRVGGLVQDGTLQRDKDGLTVRFTVTDTVANVPVVYKGILPDLFKEGRGC
                     VAQGRIGADGVFQADQVLAKHDENYMPPEAGQAIDKAKHAKKAAETVVDN"
     gene            1159..>1873
                     /gene="ccsA"
                     /locus_tag="VIJ87_00945"
     CDS             1159..>1873
                     /gene="ccsA"
                     /locus_tag="VIJ87_00945"
                     /inference="COORDINATES: protein motif:HMM:NF013725.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HEY5443044.1"
                     /translation="MVPEIGQFALIIALLLALTQATLPLLGASRGNHTWIALAAPAGQ
                     AQFIFLAIAFSCLAYSFITNDFSVLNVATNSNSQLPLHYRLAATWGSHEGSLLLWTLM
                     LGLWTVAVSLFSRHLPEEMVARVLSVMGIVSFGFLLFMLLTSNPFTRLLPAPPDGRDL
                     NPLLQDPAMVAHPPMLYMGYVGFSVAFAFAISALISGRLDATWARWSRPWTTVAWMFL
                     TCGIALGSFWAYYELGWGGW"
BASE COUNT          396 a          481 c          489 g          507 t
ORIGIN      
        1 tgtcgctcgt aaccggagct ttttggggaa aaccaacctg gggaacgtgg tgggtctggg
       61 acgcacgaat gacctccaca ctgatcctgc tttttctata catcggattc atttcactgc
      121 aatcgtctat tgatgaccct cggcgcgcgg accgcgccgg tgctgtcctc gcgctggtcg
      181 gtgtcatcaa cgttccgatc atttatttct ccgtgcagtg gtggaacacg cttcaccagg
      241 gtgctaccat ccgcattctc cagaaaccaa cgattcacgg ctcgatgctt tgggcaatgt
      301 tgataatgct tgccgcgtgt tggctctact cggtggccgt ggtgcttata cgtgttcgat
      361 gcataattgt tgagcgtgaa caaaacgcaa accgcttcgt ggaggcgact gtatgaactg
      421 gccggatctc tcaatgggtg gatatggctt ctatgtttgg ggctcgtacc tgtttgccct
      481 gctcgctata gtttgggagt tggtaacttt gagttatcgt aggaagtcgc gagaacaaga
      541 gaaagccgcc ccggaagtct tacgagggac tactaatgaa acgacgtcat aaacgcatca
      601 cctttatttt ggtcggtctt gccgggttag ggattgccac gtatttcgtc gccagcgcat
      661 ttcgcaacaa cctcgttttc ttttttagtc ctacccaggt agcggcaaag gaggccccaa
      721 tcaacagaac cttccgggtt ggcggtttag ttcaggatgg cacattgcaa cgagacaaag
      781 acgggctcac agtgcgcttt acagtgacgg atactgttgc caacgtccca gttgtttaca
      841 aaggtattct ccccgatctc tttaaggaag gtcgcggctg tgtagctcaa ggacggattg
      901 gagcggatgg agtcttccag gccgatcaag tcttagcaaa acacgatgag aattacatgc
      961 cgcctgaagc gggccaagcg atcgacaagg caaagcatgc gaaaaaagca gctgagactg
     1021 tcgttgataa ttaacttccc ggagtgcggc gcaagatgtc cgataaactt tagtttgtcg
     1081 ttgactctga atcgcacacc tgcaaatgac gacaaactaa agtttatcgg acattcgttg
     1141 tcgaaaaccc aataaccaat ggttcctgaa atcgggcagt ttgccttaat cattgcactc
     1201 ttgcttgcac taacgcaggc gacccttcct cttcttggtg cttcccgtgg caaccacaca
     1261 tggatcgcac ttgctgctcc agccgggcag gctcaattca tctttcttgc gatcgcgttt
     1321 agctgtttag cctactcgtt cattacgaac gatttttcag ttcttaacgt cgcaacaaat
     1381 tcaaatagtc aactccctct ccattatcgt ctcgctgcga cctggggatc tcacgaagga
     1441 tcactactgc tgtggacgtt gatgctcggg ttgtggactg ttgcagtgtc gctgttcagt
     1501 cgtcacttgc ccgaagagat ggttgcacga gttttgagtg tgatgggcat tgtgagcttt
     1561 ggctttttgc ttttcatgtt gctcacctcc aacccattca cgcgactctt gcctgccccg
     1621 cctgatggac gtgacctcaa tccgctgctt caggatccgg cgatggtcgc tcatccaccg
     1681 atgctctaca tggggtatgt aggattttca gttgctttcg cttttgcgat ctcagcgctg
     1741 attagcgggc gcctcgacgc aacctgggca cgttggtcac gaccatggac aaccgtcgcc
     1801 tggatgtttc tgacctgcgg cattgcactc ggaagtttct gggcgtacta cgaactcggt
     1861 tggggaggct ggt
//
LOCUS       DATCGC010000093         1404 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_1168, whole genome shotgun sequence.
ACCESSION   DATCGC010000093 DATCGC010000000
VERSION     DATCGC010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1404)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1404)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1404
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1168"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(96..359)
                     /locus_tag="VIJ87_00950"
     CDS             complement(96..359)
                     /locus_tag="VIJ87_00950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443045.1"
                     /translation="MNHLADLPAEENDKLKFIGHRTSATSKVMWDKKRQLAWILGGLI
                     IGTYISYSDSLDENGKFVLSFFIFMESLVLIIMAVLFWLYSRR"
     gene            complement(412..>1404)
                     /locus_tag="VIJ87_00955"
     CDS             complement(412..>1404)
                     /locus_tag="VIJ87_00955"
                     /inference="COORDINATES: protein motif:HMM:NF025617.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4350 domain-containing protein"
                     /protein_id="HEY5443046.1"
                     /translation="TESLRLSAKEAAEPHNHKELINMAFYTNKVLVCVFVAVSCSSPI
                     RAQHLADLNFKVDVANPAFTKNAPRVMFDEAHNNFHTLSGRYKPFADLLMNDGYRPVV
                     NRQPFTKKSLDSFKLLVIANPLGDDFDEADADKPAFSEDELAAVREWVKGGGALLLVA
                     DPGPFAKSASGLAKQFAVEMQASVTEDPANSAEEFRANMIVYSRDNHHLGEHPITAGR
                     DAAEKLNRVVVFAGQSLKGPADSVAFLQLADSAHDVTSGADGTASSVVSAKGLSQGLA
                     LKLGNGRVVVLGEADMLSALLGNPPTNEPIGMNYPGIDNKQLTLNIMHWLSGKI"
BASE COUNT          349 a          391 c          326 g          338 t
ORIGIN      
        1 cccagcttgt tcgacacatt gaggcgtcct tcgccaccct tcccagctta ttcaagcgcc
       61 taaacaaccc tagtcctgtt gccaacttgt tcgcattacc gtcgcgagta cagccaaaac
      121 aacaccgcca taattatcag caccagcgac tccatgaaga tgaagaagct gagaacaaac
      181 ttgccattct catcgagtga gtctgaataa gagatatagg tgccaataat cagcccaccc
      241 agtatccacg ccagttgtcg cttcttatcc cacatgactt ttgacgttgc agatgtccga
      301 tgtccgataa actttagttt gtcgttctct tcagcaggga gatctgcaag gtggttcaca
      361 acgacaaact aaagtttatc ggacatcaga cgtctgaaat ctgaaatcgt tttagatttt
      421 gcccgacagc cagtgcatga tgttcagagt gagctgctta ttgtcgatgc cgggatagtt
      481 cattccgatt ggttcgtttg ttggcgggtt ccctagtagc gctgacagca tgtcggcttc
      541 accgagcacc acaactcttc cattgcccag cttgagtgcc aatccctgtg agagaccttt
      601 agcagagacg acggacgagg ccgtgccatc tgcacccgaa gtgacgtcgt gagccgagtc
      661 agccaactgt agaaacgcaa cactatccgc cgggcctttc aacgactgtc ccgcaaacac
      721 aaccactcga ttgagtttct cagcggcatc acgcccagcc gtgatcggat gctcacccaa
      781 gtggtgattg tcgcgcgagt aaacaatcat gttagctctg aactcctcgg cgctattcgc
      841 gggatcctcc gtcacacttg cctgcatctc gaccgcaaac tgtttagcca acccgctggc
      901 tgacttagca aagggccccg gatcagcaac taacaacaac gcaccaccgc ccttcaccca
      961 ttcacgaaca gctgctaact cgtcttcgct aaatgccggc ttgtcggcgt cggcttcatc
     1021 aaaatcgtcg ccaaggggat tcgcaatgac gagcagctta aaactatcca acgacttctt
     1081 tgtgaaaggc tgacgattta cgacgggccg atagccatcg ttcatcaaca gatcggcaaa
     1141 cggtttgtat cgaccactca atgtgtgaaa gttgttgtgc gcttcatcaa acatcacgcg
     1201 cggtgcgttt ttagtgaacg cgggattggc gacgtcgact ttaaaattta aatcggccag
     1261 atgctgagcg cgaatcgggc tggaacaaga gacggcgaca aaaacacaga cgagtacctt
     1321 attggtgtaa aaggccatat tgattagttc tttgtgatta tgcggctctg ccgcctcctt
     1381 tgcggaaagc ctcaggcttt ccgt
//
LOCUS       DATCGC010000094         1052 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_400719, whole genome shotgun sequence.
ACCESSION   DATCGC010000094 DATCGC010000000
VERSION     DATCGC010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1052
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_400719"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1052
                     /locus_tag="VIJ87_00960"
     CDS             <1..>1052
                     /locus_tag="VIJ87_00960"
                     /inference="COORDINATES: protein motif:HMM:NF014850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 2 TIM barrel-domain
                     containing protein"
                     /protein_id="HEY5443047.1"
                     /translation="LVAPHVYDLGPLSPGRHRLTIRVDNSLLMPYRPDAHSVSDSLGG
                     SWNGIVGKIQLEDTGRVWIDDVHVFPNLSKNTMLIRVKIGNLTGLSGQATMTAVWPDI
                     GIVPVNWEEKGGSAEIEVPIRLDAPRWDEFQPKKLPLRLWLKGTTVDESKELTVGLRD
                     FHAEGNQFILNGRPVNFRGTHSGGDFPLTGYPPTDVKSWLALFEICKKWGLNHMRFHS
                     WCPPEAAFEAADQIGFYLQPEPGMWNEISPGTPMEKMLYEETDRMIRAYGNHPSFMLM
                     SASNEPKGKWQESLSKWVEHYRKQDPRRLYANGTGHTERELQNITEGTDYLAVQRINQ
                     LMLRRESAWFGGDFGE"
BASE COUNT          264 a          279 c          277 g          232 t
ORIGIN      
        1 gtcttgtagc accacacgtc tatgatcttg gtccactctc gccaggtcgt catcgcctca
       61 cgattcgcgt cgacaatagt ctgctaatgc cttaccgacc cgatgctcat agcgtttctg
      121 attcactcgg cggaagttgg aacggcattg tcggaaagat tcaactcgaa gatacaggac
      181 gcgtctggat cgacgatgtc cacgtattcc ctaacctctc gaaaaacacc atgctgatca
      241 gggtgaagat cggcaatctc actggtctca gcggacaagc aacgatgacc gccgtctggc
      301 ccgacatcgg catcgttcca gtaaattggg aggagaaggg cggcagcgct gaaatcgaag
      361 ttccgatccg gcttgatgca cctaggtggg acgagttcca gcctaaaaag ctgcctctaa
      421 gattgtggct aaaaggcacg acagtcgacg agtctaaaga gttgaccgtg ggcctgcgcg
      481 attttcatgc tgaaggaaat cagttcatcc ttaacggcag accagttaat tttcgtggca
      541 cacacagcgg tggcgatttt ccgctgaccg gttatccacc cactgatgtc aaatcctggt
      601 tggcgctatt tgagatctgc aaaaagtggg gtctcaacca catgcgcttc cattcgtggt
      661 gcccccctga agcggcattc gaagccgccg accaaattgg attctacttg cagcccgaac
      721 ccgggatgtg gaacgagatc agtcccggca ctccgatgga gaagatgctt tatgaagaaa
      781 ccgatcgaat gattcgggct tacggcaatc atccgtcttt catgctcatg tcagcgagta
      841 atgaaccgaa gggcaaatgg caagagtcgt tgtcgaaatg ggtcgagcat tatcgcaaac
      901 aagatccgcg tcgcctctat gcaaacggca cgggccacac ggaacgcgag cttcagaaca
      961 tcactgaagg tacagactac ctggccgtcc aacgaatcaa tcaacttatg ttgcgacgcg
     1021 aatcagcctg gttcggcggt gactttggag ag
//
LOCUS       DATCGC010000095         1084 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_34550, whole genome shotgun sequence.
ACCESSION   DATCGC010000095 DATCGC010000000
VERSION     DATCGC010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1084
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34550"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            220..>1084
                     /locus_tag="VIJ87_00965"
     CDS             220..>1084
                     /locus_tag="VIJ87_00965"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEY5443048.1"
                     /translation="MTNVALSTMFGATPPAGYESLYFDRNAREVRGGIRKYLGWRTPD
                     KIPSSYMDNLDYQEPLAFEFLIYVAPERVWRTDMRRFQERFRAAPQSRDYFAFLKGTD
                     GLLHAQGPERLNVALETLDKILNEIRAFCGNETEIVLFSDHGMNLEENQRVDLATHLR
                     RKNFIVKGGLKNGGRAISIPAFGLCSYAAAYCGSEDVIEEAATALTEVPGVDFVVYRD
                     QESVVVNGINGTARIERNDKGEYRYVIATGDPLDLRAIINRTNSAGRLDIPSFVSSSS
                     WFEITNSHRYPN"
BASE COUNT          255 a          275 c          288 g          266 t
ORIGIN      
        1 cgcagcaatt cgcgctaaga gaagtcgagc aatagtcggt cagacaagag caaacggaac
       61 aatatggaat ctcgcgggca tggtccggga aagtctcgtc ctcgccgact actgctctgc
      121 cttgacggtg tcccgcacaa attgatcgtg tcggcaaagc accgaggctt attcgatgct
      181 tttggaacgc cgactcgtct tctttctcct ttccccacca tgaccaacgt cgccttgtca
      241 acgatgtttg gcgccactcc tcctgccggc tacgagagtc tttactttga ccgtaatgca
      301 agagaagtgc ggggcgggat tcgcaaatat cttgggtggc ggacgcccga caaaattccc
      361 tcctcttaca tggacaacct cgactatcag gaacccctcg cgtttgagtt tttgatttat
      421 gtagcgcctg agagagtgtg gcgtactgac atgcgacgct ttcaagaacg ctttcgagcc
      481 gcgcctcagt cgcgcgatta ctttgcgttt ctgaaaggga ccgatggcct tcttcacgct
      541 caaggtcctg aacgcctcaa cgttgccctg gaaacactcg acaaaatcct aaatgaaatt
      601 cgcgcctttt gtggtaacga gacagagatc gttttgttct cagatcacgg aatgaacctt
      661 gaggagaacc agcgagtcga tctggcaaca catcttcgcc gtaagaactt catagttaaa
      721 ggcgggttga agaatggtgg gcgagcgatc tcaattcctg cgttcgggtt gtgtagctat
      781 gccgctgctt attgtgggtc ggaggacgtg atagaggagg cggcgacggc gttaactgaa
      841 gtgccgggcg tggactttgt tgtttaccgc gatcaggaga gtgtggtggt aaacggaatt
      901 aacggcactg cacgcattga gcgaaacgac aaaggtgagt acagatatgt gatagctacc
      961 ggcgatcctt tagatcttcg agctatcatt aaccgcacca attcggccgg aagactggat
     1021 atccccagct ttgtttcgtc ttcatcatgg ttcgagatca caaactctca ccgttaccca
     1081 aatg
//
LOCUS       DATCGC010000096         1023 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_467277, whole genome shotgun sequence.
ACCESSION   DATCGC010000096 DATCGC010000000
VERSION     DATCGC010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1023
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_467277"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..847)
                     /gene="sbnB"
                     /locus_tag="VIJ87_00970"
     CDS             complement(<1..847)
                     /gene="sbnB"
                     /locus_tag="VIJ87_00970"
                     /inference="COORDINATES: protein motif:HMM:TIGR03944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diaminopropionate biosynthesis protein SbnB"
                     /protein_id="HEY5443049.1"
                     /translation="MAAAPTFYVVPGSTVKSIIDDNRDQVFDAVENAYRLHSSGDAVN
                     PHSNFLRYPNKPNARIIALPAHLGGKVQKSGIKWISSFPENRATNLARASAVLILNDA
                     ATGYPLACLEASLISATRTAASAALAAEHVSPNPFEGSLCVIGTGVIARTTIEWLLFR
                     KWKFRKISLYDLDRKEAEHLSNWLRDQYNIQAEIRDRLEDAVCDSSLVLLTTTASEPY
                     LSDEKLFAHAPTVLHLSLRDICVNVILKSQNIVDDVDHCLKANTSLHLTEMASGNKDH
                     VAGSLV"
BASE COUNT          245 a          246 c          266 g          266 t
ORIGIN      
        1 ccaccaaact tcccgctacg tggtccttat ttcccgacgc catttctgtc agatgaagtg
       61 atgtgtttgc cttcaggcaa tggtctacat cgtcgacaat gttttgcgat ttgagaatca
      121 cattcacaca aatatcgcgt agtgagagat ggaggacagt tggggcatgg gcgaaaagct
      181 tttcatcgct aaggtaaggt tctgatgcgg tggtggtcag aagtaccaaa gaagagtcgc
      241 aaacagcgtc ttccaaacgg tctcgaatct cagcctgaat gttgtactga tcgcgtagcc
      301 aattgcttag gtgctcagcc tctttgcggt ccaggtcata caaactgatc ttacgaaact
      361 tccattttcg aaatagaagc cactcgatgg ttgttcgggc aatgactccg gttccgatca
      421 cgcagagaga tccctcaaag ggattggggg aaacatgctc tgctgccaat gcggccgagg
      481 cggcggtgcg cgtagcactg atcagtgatg cctcaagaca tgccagggga taacctgtcg
      541 ctgcgtcgtt taagatcaag actgccgacg ctcgggctaa gttggtggcc ctgttttccg
      601 ggaaacttga tatccattta atgccactct tttggacctt gccgcccaga tgagctggga
      661 gcgcaattat tcgagcgttg ggcttgtttg gatatcggag aaagttgctg tgtggattaa
      721 cagcatctcc cgaggagtga agacgatagg cgttttctac ggcatcgaaa acttgatctc
      781 tattgtcgtc aattatgctc ttaactgtag aaccgggcac aacgtagaac gttggagcgg
      841 ccgccataac ctgttctcct atccaacgag tgcgagttcg gtgatttctt cctggacaac
      901 aacgctctca gaatctgctg ttttataaac agtgtccaag tacctttcac cgagatccgg
      961 agagatggcg actatggttt ccccgaaact gaactctgga gctaacctcc gtattgcagc
     1021 cag
//
LOCUS       DATCGC010000097         1123 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_1191, whole genome shotgun sequence.
ACCESSION   DATCGC010000097 DATCGC010000000
VERSION     DATCGC010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1123
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1191"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1101)
                     /locus_tag="VIJ87_00975"
     rRNA            complement(<1..1101)
                     /locus_tag="VIJ87_00975"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          231 a          358 c          247 g          287 t
ORIGIN      
        1 taacccaaca tttcacaaca cgagctgacg acagccatgc agcacctctc actacattcc
       61 cttgcgggca ccccgtcgat taaaacaggt tcgtaggagt tcaagcctag gtaaggttct
      121 gcgcgttgct tcgaattaaa ccacatgctc caccgcttgt gcgggccccc gtcaattcct
      181 ttgagtttca gccttgcggc cgtactcccc aggcggagtg cttaatgcgt ttactgcagc
      241 actaaagggc ggaaaccctc taacacttag cactcatcgt ttacggcgtg gactaccagg
      301 gtatctaatc ctgtttgctc cccacgcttt cgcgcctcag tgtcagttac aggccaaaga
      361 gtcgccttcg ccactggtgt tcctccacat ctctacgcat ttcaccgcta cacgtggaat
      421 tccactcttc tctcctgcac tcaagtcccc cagtttccaa tgaccctcca cggttgagcc
      481 gtgggctttc acatcagact taagaaaccg cctgcgcgcg ctttacgccc aataattccg
      541 gataacgctt gccacctacg tattaccgcg gctgctggca cgtagttagc cgtggctttc
      601 tggttaggta ccgtcaaggt acgagcagtt actctcgtac ttgttcttcc ctaacaacag
      661 agttttacga cccgaaagcc ttcatcactc acgcggcgtt gctccatcag actttcgtcc
      721 attgtggaag attccctact gctgcctccc gtaggagtct gggccgtgtc tcagtcccag
      781 tgtggccgat caccctctca ggtcggctac gcatcgtcgc cttggtgagc cgttacctca
      841 ccaactagct aatgcgccgc gggtccatct gtaagtgata gccgaaacca tctttccatc
      901 ttccctcatg cgagaaaaga aactatccgg tattagctcc ggtttcccga agttatccca
      961 gtcttatagg caggttgccc acgtgttact cacccgtccg ccgctaatct cagggagcaa
     1021 gctcccgtcg attcgctcga cttgcatgta ttaggcacgc cgccagcgtt cgtcctgagc
     1081 caggatcaaa ctctccgaag aaatgtttga cttgctcatt tgc
//
LOCUS       DATCGC010000098         1421 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_367438, whole genome shotgun sequence.
ACCESSION   DATCGC010000098 DATCGC010000000
VERSION     DATCGC010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1421)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1421)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1421
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_367438"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(34..1122)
                     /locus_tag="VIJ87_00980"
     CDS             complement(34..1122)
                     /locus_tag="VIJ87_00980"
                     /inference="COORDINATES: protein motif:HMM:NF024827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DmsE family decaheme c-type cytochrome"
                     /protein_id="HEY5443050.1"
                     /translation="MEDSKPSESSAVLLPIVPFAWLLGDFTVAKYLKLVVLLVVLCPL
                     LWLSSGSFSGNATATSADPPQGAKPLDDQYVGTETCKACHEDQFNNFLHTSHAKLGDL
                     GSWKGKVTGCEACHGPGKAHAEEGDPKKIISFKNKGSKLISETCLTCHAGREEHNNFR
                     RGEHWRNDVGCTDCHSSHAPAGGRNTPGSITFVGKSNAEKPGFSTIHLLKVGEPQLCL
                     SCHNEVKPDFNKPFHHKVLEGMIKCSDCHNPHGGFELKQARLATGADAGCVKCHADKQ
                     GPFTYEHAPLKTEGCSACHTPHGSSNPRLLRFTQVNQLCLTCHSVAHGVGADEPAGPQ
                     HNQNAQYANCTACHVKIHGSRTSPVFFR"
     gene            1166..>1421
                     /locus_tag="VIJ87_00985"
     CDS             1166..>1421
                     /locus_tag="VIJ87_00985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443051.1"
                     /translation="MTKITYGEQKALSKGGKCLSFSRRRLEILLRMCKESWGSVTKYW
                     GLKVTKENAFRYLDDIRRAGLLNIAAKTGATALTNGRTVLS"
BASE COUNT          338 a          352 c          389 g          342 t
ORIGIN      
        1 accagtccat gaaagagttc ccgtaatgca aagctacctg aagaagaccg ggcttgtgcg
       61 cgatccgtga atcttgacgt ggcaagccgt gcaattcgca tattgcgcat tctgattgtg
      121 ttgtggccca gcaggttcat cggctcccac gccgtgagcg acactgtgac aggtcaaaca
      181 aagctgattg acctgtgtaa atctgagcaa gcggggattc gaggatccat gcggcgtatg
      241 acatgcagag cagccctcag tcttcaacgg agcgtgttcg tacgtgaaag gcccctgctt
      301 gtcggcgtgg cacttaacgc accctgcgtc ggctccagtc gcaagtctgg cctgcttcaa
      361 ctcaaaaccg ccgtgtggat tgtggcagtc actgcatttg atcattcctt caaggacttt
      421 gtgatggaac ggcttgttga agtcaggttt gacctcgttg tgacagctga ggcagagctg
      481 cggctcaccg accttcaata aatggatggt tgaaaagccc ggcttctcgg cattcgattt
      541 accaacaaaa gtaattgagc ctggagtatt ccttccgccg gcaggcgcgt gtgaagagtg
      601 gcagtccgtg cagccgacgt cgttgcgcca gtgttcgccc cggcggaaat tgttgtgctc
      661 ttccctgccg gcgtggcaag tcaaacaagt ttcggaaatc aatttcgaac ccttgttttt
      721 gaaggagata atctttttcg gatccccttc ctctgcgtgg gccttacctg gtccgtggca
      781 cgcttcacag cccgttacct tgcccttcca ggaacccagg tcaccgagct tcgcgtggga
      841 agtgtgaagg aagttgttga actggtcctc gtggcaggct ttgcaggtct cagttccgac
      901 atattgatcg tcgagcggct tggccccttg tggagggtcg gcgcttgttg cggtcgcgtt
      961 gccggaaaag gaacccgaac tgagccacaa caaagggcac agaacgacca aaagcactac
     1021 aagtttgagg tacttcgcca ccgtgaagtc tcctaataac caagcaaacg ggactatagg
     1081 taacaagaca gctgaagatt cactaggctt agaatcttcc atgaaacggc tccttgaata
     1141 ctgtcacttt tgctaggtgg ttgccgtgac caagatcaca tatggcgaac aaaaagcact
     1201 ttcaaaaggt ggcaagtgtt taagttttag tcgccggcgt ttggaaatac ttctgcggat
     1261 gtgcaaagag tcatggggat cagtgacaaa gtattggggt ttgaaggtaa caaaggaaaa
     1321 cgctttccga tacctcgatg atattcgcag ggctggactt ctaaatattg cggcaaaaac
     1381 aggggccaca gcattaacaa acggacggac cgttctgtct t
//
LOCUS       DATCGC010000099         1304 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_67764, whole genome shotgun sequence.
ACCESSION   DATCGC010000099 DATCGC010000000
VERSION     DATCGC010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1304)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1304)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1304
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67764"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..455)
                     /locus_tag="VIJ87_00990"
     CDS             complement(<1..455)
                     /locus_tag="VIJ87_00990"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY5443052.1"
                     /translation="MTAPIVQVRDVSKRFSRDGFEVIALDHVDLELEEGDFFALMGPS
                     GSGKSTLLNLLAGIDRVTEGQVVVMGTELARLNESQLATWRNAHIGYIFQTFNLVPVL
                     TAFENVELPLLLTKLSKAERKKNVETALELVGLTDRMHHQPKQLSGGQE"
     gene            complement(474..>1304)
                     /locus_tag="VIJ87_00995"
     CDS             complement(474..>1304)
                     /locus_tag="VIJ87_00995"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEY5443053.1"
                     /translation="YQRSLTLFRAGVTSKAELDHALAERDTKASLVEAAKQASSMTEV
                     GPRTEEIRAAQAQVQQMKAALDYANTQLAATEIKAPVAGTVLERIVERGEMVSPSAFG
                     GSGARTSVVDLADLTDLQIELDISQSDFSRLKMEQRAEIVPDAFPNLRYNGFIAEIAP
                     EANRAKSTVQIKVKVDNPNAQLRPEMNARVNFLSDKPAPNQTQAIARVLVPKLAVVKK
                     DGASFVFVVKNNKVEQRTIRIGDEQGDAYFVLDGLSGNESVATSGVEKLRDGDRVKIQ
                     "
BASE COUNT          272 a          363 c          327 g          342 t
ORIGIN      
        1 tgttcttgtc cgccagatag ttgtttaggt tgatgatgca tgcgatcagt cagcccgacg
       61 agttcgagcg cggtttcgac atttttcttt cgttcggctt tgctgagctt ggttaggagc
      121 agcggtagtt cgacattctc aaatgccgtc agcaccggca ccaggttgaa cgtctgaaag
      181 atgtagccaa tatgcgcatt gcgccaggtt gccagctgac tctcattcag cctggccaac
      241 tcagttccca tcaccacgac ctggccttcg gttacccgat caattccggc gagcaaattg
      301 agcagcgttg atttgcccga gccgcttggt cccatcagcg caaagaagtc gccttcctcg
      361 agttcgagat caacgtgatc gagggcgatg acttcaaatc catcgcgtga aaatcgctta
      421 cttacatcgc gaacttgaac tatcggtgcg gtcatagctt ctactctctc tgtttattgg
      481 atcttcacgc gatctccgtc gcgcaacttc tcaactcccg aagtcgccac ggattcgttg
      541 ccacttaatc cgtccaacac aaaataggcg tcgccctgct catcacctat tcggattgtc
      601 cgttgctcca ccttgttgtt tttgacaacg aagacaaacg aggcgccgtc ctttttcacc
      661 accgccagct taggcaccag tacacgggcg attgcctgcg tctgattcgg tgcaggcttg
      721 tcagaaagaa aattgacacg cgcgttcatc tcaggtcgta actgtgcatt gggattatca
      781 accttgacct tgatctgaac agtcgacttc gctctgtttg cttccggagc aatctcggcg
      841 ataaagccgt tgtagcgaag attcggaaaa gcgtccggaa cgatctctgc tcgttgctcc
      901 atcttcagac gtgaaaagtc tgactggctg atgtccagtt cgatttgcag atcggtcaga
      961 tcggcgagat caacgactga tgtacgcgct cccgagccac caaatgcaga tggactcacc
     1021 atttcaccgc gttcgacaat gcgctccaga actgtacctg caaccggcgc tttgatttca
     1081 gttgccgcga gttgagtgtt tgcatagtcg agggcagctt tcatctgctg cacttgtgcc
     1141 tgtgctgcgc gaatctcttc agtacgcggg ccaacctcgg tcattgagct cgcctgcttc
     1201 gccgcttcaa cgagtgaagc ttttgtatcg cgttccgcga gcgcgtgatc gagttccgct
     1261 ttggaagtga cacctgcgcg aaagagcgtc agtgagcgtt gata
//
LOCUS       DATCGC010000100         1146 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_234339, whole genome shotgun sequence.
ACCESSION   DATCGC010000100 DATCGC010000000
VERSION     DATCGC010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1146)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1146)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1146
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_234339"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            292..978
                     /locus_tag="VIJ87_01000"
     CDS             292..978
                     /locus_tag="VIJ87_01000"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY5443054.1"
                     /translation="MSNKSESPTVALSVGPGERISIAVIEDHREFRDYLTALLTGTEG
                     FDCTGGFRSIEEALPKINSHVPDVILLDIGLPGMNGIEGIKLFKEKYPEILLLTLTIH
                     DDDERIFDALCAGASGYLLKKTQPAQLVECVKEAANGGAPMSPEVARRVVKLFREIRP
                     PKRADYNLTPHEVRILKLLVEGHNYKTAAAKLDVAPTTINFHLQNIYQKLQVHSKTEA
                     VAKALRNRLI"
BASE COUNT          284 a          300 c          296 g          266 t
ORIGIN      
        1 ccaggcttta cgccagcgtc cgcttcgcgg actcaagctc gcttactgat tcgtcaagta
       61 tatgattacc ctaaagagcc tctcgtttaa gtcaggatcc cggcggaaga agagggtttg
      121 gaattcagaa caggttggga agggcggttt acccccgctg gcccaattaa gagctacatc
      181 gaggttgctt tagccaggcc agcgggggta aacgacgctt cctaacctgt tctgtttttg
      241 cattaacctc taaggattga atctgaactg ttccaacgcg agaacggcat catgtcaaat
      301 aagagcgaat ccccgacagt cgctttgtca gtcggccccg gcgaacgcat cagcatcgcg
      361 gtcatcgaag atcaccgcga gtttcgcgac tatctgaccg ccttgcttac cggcacagag
      421 ggcttcgact gtacgggtgg ctttcgctcg atcgaagagg ccttaccgaa aataaacagt
      481 cacgttcctg acgtgatcct tctggacatt ggtttgccgg gaatgaacgg catcgagggc
      541 atcaagctat tcaaggaaaa gtatcctgag attttgctgc ttaccctgac gattcacgat
      601 gacgatgaac gtattttcga tgcgctttgc gctggcgcat caggctattt actgaagaag
      661 acgcaaccgg cgcagttggt tgagtgtgtg aaagaagcgg ccaatggagg tgctccgatg
      721 tcacccgagg tcgcccgccg cgtcgtcaaa ttgttccgcg aaattcgtcc gccgaaacgc
      781 gccgactaca acctgactcc gcacgaagta agaattctga agctgttagt ggaaggtcat
      841 aactacaaga ctgctgcggc gaaactggat gtggcgccca ccacgatcaa tttccatctg
      901 caaaacatct atcaaaaact ccaggtgcat tcgaagactg aggccgtcgc caaagctctc
      961 cgcaaccggc tgatctgaac caactgcgga ttcgaacttc ctgtgaacct tcacggtgac
     1021 atacctgtgg cctgccttta ccattcgcgg gccttttcct ccgagagaat taatgactag
     1081 caagaaaggt ttggaggaat gtcatgtcga attattcaag ggctattcag aagtctcgac
     1141 aaacgg
//
LOCUS       DATCGC010000101         1414 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_34572, whole genome shotgun sequence.
ACCESSION   DATCGC010000101 DATCGC010000000
VERSION     DATCGC010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1414)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1414)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1414
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34572"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1054
                     /locus_tag="VIJ87_01005"
     CDS             <1..1054
                     /locus_tag="VIJ87_01005"
                     /inference="COORDINATES: protein motif:HMM:NF019229.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CRTAC1 family protein"
                     /protein_id="HEY5443055.1"
                     /translation="GRSVAWGDYDSDGHLDLLLGNLKTDLVLLKNNGDGTFPDITVQA
                     GLGGLKYNECAFADYNNDGFPDILCTNSQAQRPLKDILLKNNGDGTFTNASNQAHIRR
                     LVNGRAIAWGDYDNDGDLDLFISRGTDISFKQTLYRNNGDGTFTEVTDQAGLGSISNN
                     RAAAWGDFDNDGYLDLYVVNSGTDPEGKGPNYLYRNNQDGTFTDVASSAGVEDLVMSR
                     GRGAAWGDYDNDGFLDLFVTNGEDGTLFIEGPQILYHNEGNGNSWLKIKLVGTASNRQ
                     GLGAKVTVQIGQTIQYREANGAEGHFLSQGAGPLHFGLGQATVVDQITVNWPSGSNQI
                     LSNIPANQEVSVIEGQ"
     gene            1094..>1414
                     /locus_tag="VIJ87_01010"
     CDS             1094..>1414
                     /locus_tag="VIJ87_01010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443056.1"
                     /translation="MKIRTYAATVWVIAQVVVAHFTFGQVLTHGPVVGGVTDSTANVF
                     VRTDQAATVEIHYGTDPNLSTYSTSQAFDTDLASDFTKIVPLADLMAETTYYLDVAVN
                     AVPQM"
BASE COUNT          354 a          334 c          396 g          330 t
ORIGIN      
        1 agggagaagc gtggcctggg gcgactatga cagtgatgga catctcgacc ttttgctcgg
       61 gaaccttaaa accgacttgg ttctccttaa gaacaacggc gacgggacct tccctgatat
      121 aacggtgcaa gctggtcttg ggggtctgaa gtataacgaa tgcgcctttg ccgattataa
      181 taacgacggg ttcccagata ttctctgcac gaatagtcag gcgcagcgtc ccttaaagga
      241 tatcctcctc aagaacaatg gagacgggac atttacgaac gcttctaacc aggctcatat
      301 tcgccgtctg gtcaacggcc gggccatcgc ttggggagac tatgataacg acggcgactt
      361 ggatctcttt atctcaagag ggacggacat ttcctttaag caaactcttt atcggaataa
      421 tggagacggg acatttacgg aagtgaccga tcaggctggt ttagggagta tcagcaataa
      481 tcgggcggcg gcatggggag acttcgataa tgacggttac ctggacctat atgtggtcaa
      541 ttccgggact gatcccgagg gaaaaggccc gaattatctt tacaggaata atcaagatgg
      601 gaccttcacc gatgtggcga gcagcgcagg tgttgaggac ttggtaatga gtcgaggccg
      661 tggggctgcc tggggggact acgataatga cgggttcctt gatctcttcg tcaccaacgg
      721 tgaggatggc actctattca tagagggtcc ccagattctc taccataatg agggaaatgg
      781 taatagctgg cttaagatca agctggtggg aacagcgagt aaccgacaag ggttaggagc
      841 caaggtcacg gtccaaattg gtcagacgat tcaataccgg gaagcgaatg gagctgaggg
      901 acatttcctc tcccaggggg ccgggccgct tcattttgga ttgggtcagg ccacagtcgt
      961 tgatcagatt acagttaact ggccaagtgg ttcaaaccag attttaagca atattccagc
     1021 aaatcaggag gtcagtgtca tcgagggtca gtaatcaaaa ggagtatttc atgatctcga
     1081 gcggactagc gttgtgaaga tccgaactta tgccgctacc gtttgggtca ttgcccaagt
     1141 cgtggtagct cactttacgt tcggccaagt gctcacgcat gggccggtgg tgggaggcgt
     1201 cactgattcg accgcgaatg tgtttgttcg aaccgaccag gcagccactg tcgaaattca
     1261 ctatgggact gatccaaatc tctcaaccta ctcgacctcg caagccttcg ataccgatct
     1321 cgcaagcgac tttaccaaaa tcgttcccct cgccgacctg atggcggaaa cgacttatta
     1381 cctggacgtg gcggtcaacg ctgtgcccca aatg
//
LOCUS       DATCGC010000102         1095 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_201055, whole genome shotgun sequence.
ACCESSION   DATCGC010000102 DATCGC010000000
VERSION     DATCGC010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1095
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201055"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1034)
                     /locus_tag="VIJ87_01015"
     CDS             complement(<1..1034)
                     /locus_tag="VIJ87_01015"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY5443057.1"
                     /translation="MPEVPRPDEVVPAEPQDIDTLKTDTNLVIVPVIASDRAGSYIGD
                     LAKEEFEIVEDGVKQEIAFFAQVSVPFHVVLMLDTSASTEDKLNQIKNAAFAFVQQLQ
                     NVDRVKVISFDDQVRDLNEFTSDRNTLKDAINKTRPGQGTKVYDAMTLALNSLRTIKG
                     RRAIVIFTDGVDWHSDESTYKGTLRWLDEEGVIVYPIRYDTRAATERIAREQSNEISP
                     TTLPTTDVLRAPPRGTTPTTFPSDNPIPTSGSSKTGPLGLPSAEEIMRRRREQQRDQD
                     PNRNPNPGSSPNEIPNPPSTSRLPSDPPIGTPGTIHRSPRPNDSISAMLDMAYSTADA
                     YLRALADKSGG"
BASE COUNT          224 a          282 c          301 g          288 t
ORIGIN      
        1 ccaccggatt tgtctgcgag cgcccttaga taagcatcgg ccgttgaata agccatgtcg
       61 agcattgcgc tgatcgaatc attaggtcgc ggtgagcggt gaattgtacc gggagtgcca
      121 atcgggggat cagaaggcaa tcggctcgtg gatggtggat tgggaatctc attaggtgac
      181 gaaccaggat tcggatttcg attcggatcc tggtccctct gctgttccct ccgccgacgc
      241 atgatctctt ccgctgacgg gagacctaag ggtcccgttt tcgagctacc cgaggtcggt
      301 atgggattgt cgctgggaaa agtcgttgga gttgttcctc tcggtggtgc tcgtaacacg
      361 tcggtggttg gcagtgtcgt cggacttatt tcattagatt gctcacgcgc aattcgttcg
      421 gtcgcagcac gagtatcgta acggattgga tatacaatca cgccctcttc atcaagccac
      481 cgcagggttc ccttatacgt cgattcatcg ctatgccagt caactccatc ggtgaaaatc
      541 acaattgccc tgcgcccctt gatggtgcgt agtgaattca aagccaatgt cattgcatcg
      601 tagactttgg ttccctgccc aggcctggtt ttgttgatag cgtctttgag agtgtttcgg
      661 tcgctcgtga actcgttgag gtcgcgaacc tgatcgtcaa acgaaattac cttcacgcga
      721 tctacatttt gtagttgctg cacaaaggca aacgccgcgt ttttaatttg gttcagcttg
      781 tcttcggtgc tggcgcttgt gtcgagcatc agcacaacat ggaaaggaac tgacacctgc
      841 gcgaaaaacg cgatctcctg tttgacgcca tcctccacga tctcgaactc ctcctttgcc
      901 aaatcaccta tatatgatcc tgcgcggtca gaagcgatga ctggaacgat gaccagattc
      961 gtgtcagtct tcagtgtgtc gatatcctgc ggctcggctg gcacgacttc gtcaggccgt
     1021 gggacttctg gcatcggcgt cgcgcgaggc tttggacgcg gcggtctcgt ttgcgcaaaa
     1081 gcagtaagac acaag
//
LOCUS       DATCGC010000103         2074 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_267635, whole genome shotgun sequence.
ACCESSION   DATCGC010000103 DATCGC010000000
VERSION     DATCGC010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2074)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2074)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2074
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_267635"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..975)
                     /locus_tag="VIJ87_01020"
     CDS             complement(<1..975)
                     /locus_tag="VIJ87_01020"
                     /inference="COORDINATES: protein motif:HMM:NF024704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YARHG domain-containing protein"
                     /protein_id="HEY5443058.1"
                     /translation="MNFSPRRFSCGVLLLFLIATASFTSKAQDGMDAWKDFDFARTAI
                     KPAQIQPLYLEDLKLLRGLVFGRHGRIFKDAEIKAYLEAQSWFKPNPDFNNSMLNNTE
                     RRSLDLIRIAEASKHDTIQPGDMRYWVDRPITPKKLGKHSGAEWKVLIAEVEAIHGKK
                     FVDDPWLQQYFDERYWYSANEKYDSKKLTANERKNLETLGGAQKRQRNVALLPGDMEL
                     FERKTIPESMLAGLSLHELRLLRNEVYARHGRLFKAEWLQQYFYEQPWYVPDENFKDE
                     ELSGSDKLNVETIVRYEGKIHEGLSTTPVSRALLDGLFLEDAMQMRQEI"
     gene            complement(1097..>2074)
                     /gene="dnaJ"
                     /locus_tag="VIJ87_01025"
     CDS             complement(1097..>2074)
                     /gene="dnaJ"
                     /locus_tag="VIJ87_01025"
                     /inference="COORDINATES: protein motif:HMM:NF008035.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HEY5443059.1"
                     /translation="KEAAEAYSVLQDSEQRRRYDRFGHAGVSSSAGAGNWGAPGFGGI
                     EDILGDLFGFGDVFGGARSGSRRTAAQRGADLRYDLEISLEDAANGMTAQLRIPRLEG
                     CETCKGSGAASGTQPETCHTCGGTGQVRYQQGFFSVARTCSACRGAGRVIKSPCKDCR
                     GVGRVEREKQMEVKIPAGVETGSRLRVQGEGEGGTQGGPAGDLYVVIHVAEHEQFERQ
                     GSNLYEAVPITFAQAALGAELMVKTLDSEEKLKIPMGTQTGTVFRLKGKGMPQLGGRG
                     KGDLFVSVSVVTPTSLTREQRKLLEQLAEVETKDLEDKGLVDKVRDIFG"
BASE COUNT          455 a          613 c          483 g          523 t
ORIGIN      
        1 aatctcctgg cgcatttgca tggcatcttc gagaaacagt ccatcaagta gggcccgcga
       61 cactggcgta gtgctcaatc cctcgtgaat ctttccttcg tacctgacaa ttgtttcgac
      121 gttgagttta tcgcttcccg acaactcctc gtctttgaag ttctcgtctg gcacatacca
      181 cggttgctcg tagaaatact gttgcaacca ctcagcttta aagagccgac catgtcgcgc
      241 gtaaacttcg ttgcgcaaaa gtctcagctc gtgaagactc aaacccgcga gcatcgactc
      301 agggattgtc ttccgctcaa acagttccat gtcccctggt aacagggcga cgtttcgctg
      361 tcgcttctgg gcgccaccga gtgtttccag gttcttgcgc tcatttgccg tcaacttctt
      421 cgagtcgtac ttctcatttg cggaatacca gtatcgttcg tcaaagtatt gttgcagcca
      481 cggatcatca acgaacttct ttccatgaat tgcttcgact tcggcaatca ggactttcca
      541 ttcggccccg ctgtgtttgc ccaacttctt tggtgtaatt ggacgatcaa cccagtaacg
      601 catatcaccg ggctgaatcg tgtcgtgctt actcgcctca gctatgcgga tcagatcgag
      661 acttcgacgc tcagtgttat tgagcattga gttgttgaaa tcagggttgg gtttgaacca
      721 cgactgggct tcgaggtagg cctttatttc agcatctttg aagatgcgcc catgtcttcc
      781 aaagactaac ccgcggagaa gcttaaggtc ttccagatag agtggttgaa tttgcgcggg
      841 cttgatggcg gtcctggcga agtcaaaatc cttccaggca tccatcccgt cttgagcctt
      901 gctcgtgaaa gaagccgtcg ctatcaagaa gagaagcaag acgccgcaac tgaatcgtcg
      961 gggactaaaa ttcatgcgat cctcactttc ggccttcgta cttagtgctt agtactttgt
     1021 gctttgtacg tgcagcctta gctcgcttaa gagttggcga actaagtacc aagctcaaaa
     1081 cacaaagctc aatgctttat ccaaatatat cccgaacctt gtcgaccaaa cctttgtctt
     1141 caagatcctt ggtttccacc tcagccaact gttcaagcaa ctttcgctgt tcacgagtaa
     1201 gcgaggttgg cgttacgaca ctgactgaca cgaagagatc acctttgccg cggccaccca
     1261 actgcggcat gcctttgcct ttcaatcgga agactgtgcc agtctgcgta cccatcggaa
     1321 tctttaactt ctcttcacta tcgagcgtct tgaccatcaa ctcggcaccg agagccgctt
     1381 gcgcaaacgt gatcggaaca gcttcataga ggttgctacc ttgtcgctca aactgctcgt
     1441 gctcggcaac gtggataacc acgtacagat ccccggcggg tccgccctgc gttcctcctt
     1501 cgccctcgcc ctgcactcgc aaacgcgaac cagtctcaac tcccgcagga atctttacct
     1561 ccatttgttt ctcgcgctcg actcgtccga caccacgaca gtctttgcac ggtgacttaa
     1621 tcacgcgccc agccccgcga cacgcactgc aagttctggc taccgagaag aaaccttgtt
     1681 gataacgaac ctgcccggtt cctccacagg tatggcaggt ctcgggttga gtgccactcg
     1741 cggctcccga acccttacaa gtttcgcaac cttcgagacg cggaatgcgc agttgtgctg
     1801 tcattccgtt tgcggcgtct tcgagagaga tctcgaggtc gtagcgaagg tcggcgccgc
     1861 gctgggctgc ggttctccgg gaacctgaac gcgcgccacc aaaaacatcg ccaaagccga
     1921 acaaatcacc gaggatatct tcaattccac caaacccagg tgcgccccag tttcccgcgc
     1981 cagcactgct tgaaactccc gcatgaccaa accggtcata acgacgtcgt tgttcggagt
     2041 cctgcaaaac gctgtaggct tccgcagctt cttt
//
LOCUS       DATCGC010000104         1358 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_267652, whole genome shotgun sequence.
ACCESSION   DATCGC010000104 DATCGC010000000
VERSION     DATCGC010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1358)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1358)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1358
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_267652"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            163..>1358
                     /locus_tag="VIJ87_01030"
     rRNA            163..>1358
                     /locus_tag="VIJ87_01030"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          360 a          294 c          418 g          286 t
ORIGIN      
        1 cggcgtccgc cggagcgatc gtaagcaaaa attgaattgt gcgttacacg tcagatcttt
       61 gatgcaaaac ttacaagatc ggacaaaccc tgttcacggc aacgtgagca ggaattgaaa
      121 ggtcagattt tgccttggct atagcagcct tggcacaaac ttttcacgga gagtttgatt
      181 ctggctcaga acgaacgctg gcggcgtgga taagacatgc aagtcgaacg ggatttcatt
      241 tgtagcaata cacgtgaagt tcagtggcgc aagggtgcgt aacacgtggg caatctgccg
      301 agaagtgggg gatagctcgc cgaaaggcga attaataccg catgtggtca gcgaagacat
      361 cttcgcgaaa ccaaagccgg ggcaacctgg cgcttcttga tgagcccgcg gcctatcagc
      421 tagttggtga ggtaacggct caccaaggct aagacgggta gctggtctga gaggacgacc
      481 agcctcactg gaactgagac acggtccaga cacctacggg tggcagcagt cgagaatttt
      541 tctcaatggg cgaaagcctg aaggagcgac gccgcgtggg ggatgaaggg tttcgatccg
      601 taaacccctg tcatttgtga acaatggtta ttatttaaaa gatgatgact tgatagtaat
      661 gaaagaggaa gggacggcta actctgtgcc agcagccgcg gtaatacaga ggtcccgagc
      721 gttgttcgga ttcactgggc gtaaagggtg cgtaggtggc atagaaagtt tgatgtgaaa
      781 gctcagggct taaccctgaa atggcattga atactgctgt gctggaggtt tggagggggg
      841 actggaattc ttggtgtagc agtgaaatgc gtagatatca agaggaacac cagtggcgaa
      901 ggcgagtccc tggacaacac ctgacactga ggcacgaaag ctaggggagc aaacaggatt
      961 agataccctg gtagtcctag ccctaaacgg tgcacgtttg ctgtaaaagg aatcgacccc
     1021 ttttgtggcg aagctaacgc gataaacgtg ccgcctggga agtacggtcg caagattaaa
     1081 actcaaagaa attgacgggg gcctgcacaa gcggtggagt atgtggctta attcgatgca
     1141 acgcgaagaa ccttacctgg ccttgacatg catgtggtag aaccatgaaa gtgggacgat
     1201 cccgcaaggg aagcttgcac aggtgctgca tggctgtcgt cagctcgtgt cgtgagatgt
     1261 tgggttaagt cccgcaacga gcgcaacccc tgtgtcctgt tgccagcgcg taatggcggg
     1321 aactctggac agactgccta gttcaactgg gaggaagg
//
LOCUS       DATCGC010000105         1432 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_201064, whole genome shotgun sequence.
ACCESSION   DATCGC010000105 DATCGC010000000
VERSION     DATCGC010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1432)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1432)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1432
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201064"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..622
                     /locus_tag="VIJ87_01035"
     CDS             <1..622
                     /locus_tag="VIJ87_01035"
                     /inference="COORDINATES: protein motif:HMM:NF019339.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5443060.1"
                     /translation="DHPSLDERIRYLSAYLGARADRVTHQMELNRERAAYFQTMESVM
                     HHDLQLSIGAGRFHAAVLDAQRLVDFRPSSENLFWLAEAYRTLGPRSPQLTEKELTNS
                     AKKDAAKNREKRTLEEEERLLFETPAGKENWQRHQQKAEELYLRALNAENPVPTAHRG
                     LGMLYEKLGRTNDAASEYEKYIELAPTANDRERIKRRLETLRRTPN"
     gene            619..1335
                     /locus_tag="VIJ87_01040"
     CDS             619..1335
                     /locus_tag="VIJ87_01040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443061.1"
                     /translation="MRLISSVRLRAVIPALILAVAMLLLTGLIAPIHAQFLHPKIKSK
                     ETTIRSVVVLPAKVNVVRDSMKGPEGMAAESDDLSTRVEKMIAEVLSKQKNITTVASP
                     TAGQTDSQPNYNVADFQTKFDDLLPKIMKKRSDVKKGRFSMGDEVLNLNLEKDTDAIV
                     FIRGEGKKLTEGKTAFIMLVGGVPAYLKLQIGIVDARSGDVLLYTDPFFGGDPTTAVD
                     RLRKALEEGFKKLPAAQVAR"
BASE COUNT          389 a          347 c          382 g          314 t
ORIGIN      
        1 cgaccatcct tcacttgatg agcgaattag gtatctgagt gcgtatctcg gcgcgcgggc
       61 cgacagagtg acgcatcaga tggagttgaa tcgagagcgc gcagcttact tccagaccat
      121 ggaatcggta atgcaccacg atcttcaatt gtcgattggc gctggacgtt ttcatgcagc
      181 ggttcttgac gcgcaacggc tggtggattt tcgtcccagt tcggaaaacc tgttttggtt
      241 ggcagaggcc tatcgaactc ttgggcctcg ttcccctcag ctaacggaaa aagaactgac
      301 aaacagcgcc aagaaagatg ctgcgaagaa tcgtgagaaa cgcacgctgg aagaagaaga
      361 gcgtctactg tttgagacgc cggcgggtaa agagaattgg cagaggcacc aacaaaaggc
      421 cgaagaattg tacctgcgcg cattaaacgc tgagaaccca gtgcctaccg cacatcgtgg
      481 gttgggaatg ctttatgaaa agctcggacg aacaaacgat gccgcctccg aatatgagaa
      541 gtacattgag ttggcaccca cagcaaacga tcgcgaacga attaagagac gtcttgaaac
      601 gttaaggaga accccaaatt gaggcttatc agttccgtca ggttgcgagc agtaatccca
      661 gcattaatct tggcagtcgc aatgttgctg ctcacaggtc tcattgcccc aatccacgcg
      721 cagtttcttc atcctaagat caagtcgaaa gaaaccacga ttcgctccgt tgttgttctc
      781 cctgcgaaag tgaatgtggt ccgcgacagc atgaagggtc cagaaggaat ggcagctgag
      841 tctgacgacc tgagcacgcg cgtagaaaag atgattgctg aagtcctgtc gaaacagaaa
      901 aacattacca cggtagcctc accgactgcg ggccagaccg attctcaacc gaactacaat
      961 gtcgccgatt ttcaaaccaa gtttgatgat ctgctaccca agatcatgaa aaagcggagc
     1021 gacgttaaga agggccgctt ctcaatgggc gacgaggtgc tcaacctgaa cctggagaag
     1081 gatactgatg cgattgtctt cattcgtggc gaagggaaga aactgactga agggaaaact
     1141 gcttttatca tgttagttgg cggagttccc gcttatctga aattacagat cgggatagtg
     1201 gatgccagaa gtggagacgt tctgttgtac acagatccct ttttcggcgg cgatccaaca
     1261 acggcagtcg atcgattgcg gaaggccctg gaagagggtt tcaagaaact gcctgcagcc
     1321 caggtagcgc gctgattcct tcacccaata aaacaattac gggcagtaag tgaactaatc
     1381 acctactgcc cgttttcggt tcttcaaccg gggtatcgcc tgcgatgcgt ta
//
LOCUS       DATCGC010000106         2141 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_400801, whole genome shotgun sequence.
ACCESSION   DATCGC010000106 DATCGC010000000
VERSION     DATCGC010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2141)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2141)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2141
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_400801"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2141
                     /locus_tag="VIJ87_01045"
     CDS             <1..>2141
                     /locus_tag="VIJ87_01045"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HEY5443062.1"
                     /translation="VGFFVLFKQGGRAPYVLHFASLCLAAFVFHFYTPTGSYRALDLG
                     IAFLRNAALILFAPLFLHFCTLYPTRQQLFSTRRWRALWLYIPAFLLIAMAVPLFLRD
                     ELAKVIPVVHRIPVTESLLSFFYTAGIVHFVVALVASAALLIRTYFTARATIVRQQVK
                     WVVWGTVLAVAPFTFLYAVVYLFGAPTDRWLTDVAVLPLALIPFAFGYSVLRYRLMDV
                     ELVVRRVFVYALTTLAIALLIGVVVYTGGLYAFGSDQTFTSGEITLRVVIAVLAMAAI
                     VMVAAPVKNLLQVQVDRLFYGERYDLRNSLMDFGRTLSATTALDPLLDSLVRRLQEVM
                     NVGRIAIFIEDKQAPSGYSIARSTGLSNEVIVPPDFREMIRVKSAEYGIVRVDDLDLT
                     AGASGVVKRALHYFVPCVVRGRMVAVIGLGRSVDGALLSSEDVEILRTVSGYVAVAIE
                     NSLLYQDQQERAGELKLLKEFNESIIESINVGLLAVDLDGRVTRLNSALEHILDLRRD
                     SAVGKRVENLFSEDFAETLIQVLGKDGWQLKEIRNIYKLHTATRGNRSLVLNIALAPL
                     QDAQGQTGALVVLEDVTTRIGLEEQLQQREKLSSIGLLAAGVAHEVNTPLTGVSSYTQ
                     MLLGMLSENDPKHALLQKVRTQAERATNIVNNLLNFSRTGNATEFAELDISRVLDDTL
                     QLLEPQLRRSQIEIVRSYDPETPGVFGNAGK"
BASE COUNT          437 a          547 c          572 g          585 t
ORIGIN      
        1 gtcggtttct ttgtcctctt caaacagggt ggacgcgcgc cgtacgtttt acacttcgcc
       61 tcgctttgtc ttgcggcctt cgtgtttcac ttctatacgc cgactgggag ctacagagct
      121 ctcgacttgg gaattgcatt cttaaggaat gcagcgctca tcttattcgc gccactcttc
      181 ctccacttct gcacgttgta tccgacgcgt cagcagttgt tctctactcg ccgttggcga
      241 gctctctggc tatacattcc agcgttccta ttgattgcaa tggcagtccc gctcttcctc
      301 cgggacgagt tggcgaaagt aatcccagta gtacaccgta taccagtcac tgaatcgctg
      361 ctctcgttct tctacactgc ggggatagtg catttcgttg tcgctctggt agcaagcgcg
      421 gcgctgttga ttcgaaccta cttcacagct cgtgcaacga ttgtcaggca acaagtgaag
      481 tgggttgttt ggggtacggt tctcgctgtt gcgccattca cgtttctata cgccgtcgtc
      541 tacttgtttg gtgctccaac ggaccgttgg ctgacagatg tcgcggtcct tccgctagct
      601 ttgattccat ttgccttcgg ttactcggtt cttcgctatc gcttgatgga cgttgagctg
      661 gtagtacgac gtgtgtttgt ttatgcgctc actacgctgg cgatcgcttt gctgatcggc
      721 gtcgttgttt acaccggcgg gctctatgca tttggatctg atcagacgtt cacttcaggc
      781 gaaataactt tgcgagtcgt aattgcagtg ctagctatgg ctgcgattgt gatggtcgca
      841 gcgccagtca agaacttgct tcaggtgcag gtggaccggc tgttttatgg cgaacgttac
      901 gacctacgaa acagcctgat ggactttggc cgaacacttt ctgccacgac cgcgcttgac
      961 cccctccttg attcactcgt gcgacgcttg caagaagtga tgaacgtcgg tcgtatcgcg
     1021 atctttatcg aagacaagca agccccgtct ggttattcaa tcgcgcgctc aacaggtctt
     1081 tcgaatgaag taattgtccc gcctgatttc cgcgagatga ttcgtgtgaa atcagctgaa
     1141 tacggaatcg ttcgggttga cgatcttgat ctgaccgctg gtgcgtcggg agtagttaag
     1201 cgagcgctcc actactttgt tccgtgtgtt gttcgtggac gtatggttgc cgtgatcgga
     1261 cttggtcgtt cggttgatgg agcgttgctt tcgtccgaag acgttgaaat cctgcgaaca
     1321 gtttcaggct atgtagcggt cgcaatcgag aatagtttgc tctaccagga tcaacaggaa
     1381 cgcgctggag aattgaaact actcaaagag ttcaatgagt cgatcattga gtcaatcaac
     1441 gtcggcttgc tggccgttga tctggatggg cgagttactc gcctgaattc ggcactcgaa
     1501 cacatactcg atcttcgacg tgattccgcg gttggtaaac gcgtcgagaa tctattctct
     1561 gaagatttcg ctgagacgct gattcaggtt ctgggtaagg acggttggca gcttaaagag
     1621 attcggaata tctacaagct acacacagcg acacgtggta accggtcact ggtgctgaat
     1681 attgcattgg cgcctttgca ggacgcgcaa ggacaaaccg gcgcgctggt cgtgcttgaa
     1741 gacgttacaa ctcgcatcgg tctcgaagaa cagctccagc aacgtgagaa actgtcgtca
     1801 atcggtctgc tcgcggcggg cgtggcccac gaagtgaata ctccgttgac tggcgtttcg
     1861 tcttacacgc aaatgcttct tggcatgttg tctgaaaacg atcccaagca tgctttgcta
     1921 cagaaagtca gaacacaggc ggagcgtgcc acaaacatcg tcaacaacct gcttaacttt
     1981 tcgcgcacgg gtaacgctac cgagtttgct gaactcgaca tttcgcgcgt gcttgacgat
     2041 acgcttcagt tgctcgagcc acagttacgt cgcagtcaga tagaaatcgt gaggtcgtac
     2101 gaccccgaaa cacctggcgt gttcgggaat gccggcaagt t
//
LOCUS       DATCGC010000107         1051 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_434167, whole genome shotgun sequence.
ACCESSION   DATCGC010000107 DATCGC010000000
VERSION     DATCGC010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1051)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1051)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1051
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_434167"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(28..582)
                     /locus_tag="VIJ87_01050"
     CDS             complement(28..582)
                     /locus_tag="VIJ87_01050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443063.1"
                     /translation="MNEETKQLGEAYRQWKDAEKSKNVARDKFFRAVTEELEQEIPPQ
                     VVERVEASDDEQALRIAQRRFVRHRVVDVARVSDTEYDVILEEDASLRPYSYINRDDG
                     TVYRRIISEGTPILDDEALRDESPELWEAITEEVVERKLKPLDKLTPEETEALRPYIA
                     MPKPQVKLGAPRKATQEELDGAEE"
     gene            complement(575..895)
                     /locus_tag="VIJ87_01055"
     CDS             complement(575..895)
                     /locus_tag="VIJ87_01055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443064.1"
                     /translation="MTQIVARQQCRSLDGWYPYKAQSSADEDAHYVVHVNPWANRSEQ
                     HVCECKGYQYRGRCRHQKEAHLDHCGWNEVDSEIQQTPEEAKNRICPECGGPTHYAMW
                     EVDE"
BASE COUNT          235 a          307 c          229 g          280 t
ORIGIN      
        1 cttccacaag tgataccagc aacgaactta ctcttctgct ccatctagtt cctcttgcgt
       61 agcctttcgg ggggcaccta actttacctg tggcttgggc atggctatgt agggccgcaa
      121 cgcctctgtt tcctcagggg ttagcttatc caagggtttg agtttccttt caaccacttc
      181 ctcagtgata gcctcccaaa gctcgggtga ctcatcgcgt aatgcctcat catcaagaat
      241 cggcgttccc tcagatatga tgcgtcggta tactgttcca tcatcccggt taatataaga
      301 atacggacgg aggcttgcat cttcctctag gataacgtcg tattccgtat cactaacgcg
      361 agccacatca acaacgcggt gacgaacaaa ccgacgctga gcaatacgta acgcctgctc
      421 atcatcgctg gcttcgacgc gctcaaccac ctgtggcgga atctcctgct ccaattcctc
      481 agtgaccgcc cggaagaact tgtctctagc cacgttctta gatttctcag catctttcca
      541 ctgacggtac gcctcaccta gttgtttagt ctcttcattc atctacttcc cacattgcat
      601 agtgggttgg accaccacac tcaggacaga tacgattctt tgcttcctca ggagtctgtt
      661 gaatctcact atccacttca ttccagccgc aatgatctag gtgagcttcc ttttgatgcc
      721 gacagcggcc acgatactgg taacccttac attcacatac atgttgttca ctacgattag
      781 cccaagggtt cacatggaca acgtaatgtg cgtcctcatc ggctgaggac tgagccttgt
      841 aaggatacca gccgtcaagt gagcggcact gttggcgagc aacgatttgg gtcatccgtt
      901 catgatttca aacgcccagg tccaaggaaa tgttgcctag aacgagcaag acccgccgat
      961 tagagcgggc ctcgcacgtt tactcgcctg cgcgctgggt tacttaccct caggtacgtc
     1021 ctctatagct ccaagacgtt catttaccct a
//
LOCUS       DATCGC010000108         1882 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_300807, whole genome shotgun sequence.
ACCESSION   DATCGC010000108 DATCGC010000000
VERSION     DATCGC010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1882)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1882)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1882
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300807"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..253
                     /locus_tag="VIJ87_01060"
     CDS             <1..253
                     /locus_tag="VIJ87_01060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443065.1"
                     /translation="RIPLPEILQLAWELTTDRLIIEWIDAKEAMFHLLARGNDHLYEY
                     LTRDLFEKVSLKYFYLERREMLNDGSRCLYEMRRRDQIA"
     gene            complement(974..>1882)
                     /locus_tag="VIJ87_01065"
     CDS             complement(974..>1882)
                     /locus_tag="VIJ87_01065"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEY5443066.1"
                     /translation="VIFDPNGAAIPGATVTLINSETRQIVSVVSDGEGSYEFNGIEVG
                     TYSLKIEARGFATSQVSMITLNANDNNRVDQTLSIASINEVVEITAPEQVMMGGAMVA
                     MPEEPLVKAALSDNLEAVKENLLKFEANIRDKVTDWTALECAVRNGNREMVQVLLASK
                     ADVNARDRSGQTVLMMIGEDVTSDLVWDLLNAGAKINLRDHDGDTALIEAATVNNTEA
                     LRTLLDAGAKVSLANNNGETSLMKAASEGLVNNMRILVQAGADVNQRDKRGKTALTYA
                     KENDHPAAVRLLTSFGALEFAPKEEP"
BASE COUNT          439 a          492 c          447 g          504 t
ORIGIN      
        1 acggatcccg ttgccggaga ttttgcagtt ggcctgggaa ctaacaacgg atcgtctgat
       61 tatcgaatgg atcgatgcaa aagaggcaat gtttcatcta ttggctagag gcaacgacca
      121 tctgtatgaa tacctcacga gagacttgtt cgaaaaagtt agcctcaaat acttctacct
      181 tgaacgacgc gaaatgctta acgatggatc ccgctgtctt tacgaaatga ggaggcgaga
      241 ccaaattgcc tgaggccctg cgagataccc tactcgctgg tctcgcttgc gaatctttgc
      301 ttcctttcac cctggctaat tctactcaat cctaatgctt aacgggagac cggatcaccg
      361 tatcccattt ctattgaagt tggcggatca gaaagcacgg ttagactgta atggtctatt
      421 caatactgtt ctgacccgcg aactgctgtt gaaattgcta aaggtgagat gaaaacacct
      481 tctgaggtgg cggagtggat cgagcggaat tcacccttgg gcgagagttc tcttacggtc
      541 aacgcaccct aaaactcaaa agctaaaaat ttccaccgca ctcatcgtga ccgcaatcac
      601 aatcaagttc aattgttttg cctgcacctt cacatgacgc actacaatat ttgccgtcag
      661 gttgtggtgg acaggtacac acagggttct tgcactgttt cggttcgtca gccattggga
      721 gcctcctaag ttttctaaga ctgagtgaat agagtagcac aagagtttag gatttcggat
      781 tgcggaaccg gctgattgac ttattgggct tatgaagtca gtaccactcc gcggtagcgt
      841 gtggcttgtt ctttcaatca aaaacgcacc agcctgagcc acacgctacc gcattgtggt
      901 actgacttca tgacactgcc tctgcaagtc agtcgacatc agagcagccg agactaccca
      961 agaagtcaaa cggttacggt tcttcttttg gtgcgaactc aagcgcgcca aatgaagtca
     1021 acaatcgcac tgctgctgga tgatcatttt ctttcgcata cgtcagcgcg gtcttccccc
     1081 gcttgtcacg ttgattaacg tcggcgccgg cctggacaag aatccgcatg ttgttgacca
     1141 ggccttcgga ggcggctttc atgagtgaag tttcgccatt gttgttggcg agactcactt
     1201 tggctccagc gtccaggagt gttcgcagcg cctcagtgtt gtttacagtt gcagcctcta
     1261 ttagcgcggt atcgccatcg tggtcacgta agtttatttt tgcgccggcg tttagaagat
     1321 cccaaacgag atcactcgta acgtcttcac cgatcatcat caatacggtt tgcccacttc
     1381 tatcccgggc atttacatct gcctttgagg caagcaggac ttgaaccatc tcacgatttc
     1441 cgttacgtac cgcgcactcg agcgcggtcc aatcagtaac cttatcgcga atgttagcct
     1501 cgaatttcag tagattctcc ttgacggctt caagattgtc agacagggcg gcttttacga
     1561 ggggctcttc gggcatcgct accatcgcgc cgcccatcat cacttgctcg ggagcggtga
     1621 tttccaccac ctcgttaatg ctcgcaatgc tcaaggtttg gtccactcga ttgttgtcgt
     1681 ttgcattgag tgtgatcatc gaaacctggc tggttgcgaa tccacgtgct tctatcttca
     1741 aactgtaggt gccaacttca attccgttga actcgtaact tccttcgcca tccgacacca
     1801 cactcacaat ttgtcgggtc tctgaattga tcaacgtgac ggtagccccc ggaatcgcgg
     1861 cgccattggg atcaaagatc ac
//
LOCUS       DATCGC010000109         1147 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_1361, whole genome shotgun sequence.
ACCESSION   DATCGC010000109 DATCGC010000000
VERSION     DATCGC010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1147
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1361"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            130..867
                     /locus_tag="VIJ87_01070"
     CDS             130..867
                     /locus_tag="VIJ87_01070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443067.1"
                     /translation="MKILIGVFVVLVTFSSAAYAQKKPWTEWTKKDVDKTLNDSAWGQ
                     TQSEGGQSQQPQSTSAVTATTAARREDSNLGAAGRVESGEVKPSTQVKYHVRFLSAKP
                     VRAAFARNLLLAQTQPNEALTGQLQSFIDRDFNDYIVVSVGIEVSDQKLAMPLMRVFT
                     GATTEALQKNVYLERKDGKKLFLMEYRAPTEDGMGAKFVFQRVVDGQPFLSESDSVHF
                     VAQFNEKMKLNTKYKLSEMLYDGKLEY"
     gene            895..>1147
                     /locus_tag="VIJ87_01075"
     CDS             895..>1147
                     /locus_tag="VIJ87_01075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443068.1"
                     /translation="MKTLLSLSLILAVAVVSAFGQDKNWLQWSKADAEKILNHSGWSQ
                     TQSETDTSEMVYSPTSRGTSSIGRFENGRTTGDQQSINNN"
BASE COUNT          321 a          267 c          293 g          266 t
ORIGIN      
        1 cggccgatca tggttccgac aggttctcta cgttcaatga gtatacctgc gacgcgactg
       61 cctgagtctt tggatccagg aagttcaaaa cctaatacca cattttagtt cgtgctaagg
      121 agcccatcga tgaagatatt aataggtgtg tttgtggttc tcgtgacttt tagtagcgca
      181 gcatacgcac agaagaaacc ctggactgaa tggacgaaga aagatgtaga caaaacactg
      241 aatgactctg cttggggaca aactcagtct gaaggcgggc agtctcaaca accgcaaagt
      301 acttcggccg ttactgccac gaccgcagcc aggcgcgaag attcaaacct tggcgccgcc
      361 ggtcgagttg aatcaggcga agtcaaaccc tccacgcaag tcaaatatca cgttcgcttc
      421 ctatcggcga aaccggtgcg agcggcattt gcgcgaaatt tgttgttggc gcaaacccag
      481 ccaaacgagg ctttgaccgg acagctgcag tctttcatcg accgagactt caacgactat
      541 atcgtggtct cggtaggaat tgaggtgagc gatcagaaat tggcgatgcc attaatgcgt
      601 gtgtttaccg gagctactac cgaggcgctt caaaagaatg tctatcttga gcgcaaagac
      661 ggaaagaaac ttttcctgat ggaataccgg gccccaactg aggacggcat gggtgcaaaa
      721 tttgtatttc aacgtgttgt ggacggccag ccatttctca gcgagagcga cagcgttcac
      781 ttcgtggcgc agtttaacga gaagatgaag ttgaatacga aatacaaatt gtccgagatg
      841 ctctacgacg gaaagctcga gtactagtta ccaaatcgat cgtcaatatt tgaaatgaaa
      901 accctgcttt ctctaagttt gatactggcg gttgctgtag taagtgcgtt cggtcaagac
      961 aagaactggc ttcagtggtc aaaagctgac gccgagaaaa tactgaatca ttcgggctgg
     1021 tctcaaactc aatctgaaac tgacacctcg gaaatggtct attcgccgac gtctagggga
     1081 acatcttcga tcgggcgctt tgagaatgga agaacaaccg gtgatcagca atcgatcaat
     1141 aacaacc
//
LOCUS       DATCGC010000110         1069 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_300812, whole genome shotgun sequence.
ACCESSION   DATCGC010000110 DATCGC010000000
VERSION     DATCGC010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1069)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1069)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1069
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300812"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            295..>1069
                     /locus_tag="VIJ87_01080"
     CDS             295..>1069
                     /locus_tag="VIJ87_01080"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HEY5443069.1"
                     /translation="MKKKALITGITGQDGSYLAEHLLSLGYEVHGLVRRVALEAPETR
                     VGRIAHLLEQVTLHAASLESYPSVFHVISQHDFDECYHLAAQSFVAESFADGFSTMNT
                     NINGTHYVLAALRELRPNCRFYFAGSSEMFGNVNEVPQRETTLLQPRSPYGISKVAGF
                     HLTRNYREAYGLFGVSGILFNHESPRRGFEFVSRKTTSTVARIKLGLASELRIGNLDA
                     KRDWGHAIDYVRAMHLMMQQPKADDFVIATGETHSVRELC"
BASE COUNT          268 a          267 c          257 g          277 t
ORIGIN      
        1 gaagcccctt aatcccgcaa gcaggcctgt ttgggaagtt cagtttacaa attcaattaa
       61 acattaagcc ttatcgattc caagatgtgc tctgactacc acttagttgc ttgtcgcact
      121 tcctcggaag ctttcttttg agttcatcgt ctaaaaacct tcgagtcaag tgtcgtccag
      181 ccacgcggca ccagtccaga gggtaatagg tcaacatttc gcttttatgc cccaatgcgg
      241 tttaatgtgc ggccaattgc tagcagcgtt tcgaatccct aactggagag ttttgtgaag
      301 aagaaggcgt tgattactgg aattaccggg caggatggaa gctaccttgc cgaacactta
      361 ctgagcttgg gctatgaagt tcatgggcta gtccgtaggg tcgctttaga ggctcccgag
      421 actcgcgttg ggcgaattgc tcaccttctt gaacaagtta ctcttcacgc agctagtctg
      481 gagagttatc cgagtgtttt ccacgtaatt agccaacatg attttgacga gtgttatcac
      541 cttgcagccc aaagtttcgt cgccgagagc tttgccgatg gcttctcgac aatgaacaca
      601 aacataaatg gtactcacta cgttctcgca gctctacgcg aactaaggcc aaactgtcgt
      661 ttctactttg ctggttccag cgaaatgttc ggtaacgtga atgaagtgcc acagcgggaa
      721 accaccttgc ttcagcctcg cagcccttac ggcatcagca aagttgcggg cttccatctc
      781 accagaaatt accgcgaggc ttatggcctg ttcggagtca gtggaattct cttcaaccac
      841 gaaagtccac gacgaggctt tgaattcgtc agccgcaaaa cgacgagcac agttgctcga
      901 atcaaacttg gtctggcttc agagttgagg attggaaatc tcgacgccaa acgagattgg
      961 ggtcacgcaa tcgactacgt cagagcgatg catttgatga tgcaacaacc aaaagcagac
     1021 gacttcgtaa ttgctaccgg cgagacccat agtgttcgcg aactttgtg
//
LOCUS       DATCGC010000111         1482 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_201120, whole genome shotgun sequence.
ACCESSION   DATCGC010000111 DATCGC010000000
VERSION     DATCGC010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1482)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1482)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1482
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201120"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..744
                     /locus_tag="VIJ87_01085"
     CDS             <1..744
                     /locus_tag="VIJ87_01085"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY5443070.1"
                     /translation="EGSDPKLKAEAVVYSAHYDAYGVGADDRIYHGAADNGLGVAEML
                     AVAETMAKMETKPRRSIIFIALTGEEYGGYGSTYWVAHPTWKLKQVAADLNLDGMGTE
                     VYGPVKVLVGFGAEHSSLGSMLTDVATANGIKVIPDPMPEEKSFYRSDHYFFVKRGIP
                     GLMWMGAPEGDSKLWIDRLKQWEKTDYHQPSDTVRPEWNWDGPKTIAVVGLVMGLRVA
                     NEETMPSWLPNSIFNRERGTDKPAPPEPD"
     gene            1192..>1482
                     /locus_tag="VIJ87_01090"
     CDS             1192..>1482
                     /locus_tag="VIJ87_01090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443071.1"
                     /translation="MRPITKTIFMSLLALVVSATMAETTSAQFGASSASIRELVSRIQ
                     TDTSTLRSSVQNASDRGNYRVSDLNQLIATFDAATVQLDRRLSTRRATAVDAR"
BASE COUNT          381 a          357 c          399 g          345 t
ORIGIN      
        1 gaaggttctg atccaaaact caaagctgaa gcagttgtct actccgctca ctatgatgct
       61 tatggagttg gcgcagacga tcgcatctat cacggtgccg cagacaacgg acttggcgta
      121 gccgagatgt tggcagttgc ggagactatg gcgaagatgg agacaaagcc acgccgatcg
      181 atcatcttca tagcactaac tggagaggaa tatggcggct acggctcaac ttactgggtt
      241 gcgcatccga cctggaaact caaacaagtc gccgctgatt tgaatcttga tggaatgggt
      301 accgaagtct atgggccggt aaaagtcctc gtcggatttg gggccgaaca ttcatccctg
      361 ggttcgatgt taactgacgt cgccacggcg aacgggatca aggtgattcc cgatccaatg
      421 cctgaagaga agtcgtttta tcgttcggat cactatttct ttgtgaagcg cggaatcccc
      481 ggacttatgt ggatgggtgc tcctgaaggt gactcgaagc tttggatcga tcgtctgaag
      541 cagtgggaga aaacagacta tcaccaacct tccgacactg ttagacctga gtggaactgg
      601 gatggtccaa agacgatcgc tgtggtcggt ttggtgatgg ggttgcgagt cgccaatgaa
      661 gaaacgatgc cgtcgtggtt acccaattca atctttaatc gcgagcgcgg cactgacaag
      721 ccggcgcctc ctgagccaga ctgaaagtcc gatatgcttt agcttgtcgt tgagaagaag
      781 agagtcggcc acagataaac gcggatggag cagatgagat cctgtttatc tgatggccga
      841 tgtgttttcc cacttcgact agctgaagca cggatataca caccgtaaaa gcttcacacg
      901 ctaatttctt cacccctttt ccgtggttct aaagcggcgc aagacgattg caatactctt
      961 gtcctgaaat tcaggggtgg agtaaagcat gattatctcc ccggtggacc aactcaaaac
     1021 cgtacgactt agaagaggtt tttgtctgaa cgtgattcag cgttcggtca gcatgcagct
     1081 cctccccatc cggcaaactc ctcgaaaaaa cacacccaag acacaggatc agttactggc
     1141 acacagtttg aaggtgttat cagcggggaa gactgaggag ggaagaaaat tatgagacca
     1201 attacgaaaa caatttttat gagcctgctg gccctggttg tttcagcgac gatggctgaa
     1261 acaacgtcgg cccagtttgg ggccagcagc gcttcaatta gagagctcgt tagtcgaatt
     1321 caaacagaca cgagtacctt gcgaagttcc gtacaaaatg cttcggatcg cggcaactac
     1381 cgggtcagcg atctcaatca actaatcgct acattcgatg cggcaactgt ccagctcgat
     1441 agacggctca gtactcgccg ggcgactgct gtggatgcgc gt
//
LOCUS       DATCGC010000112         1511 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_367521, whole genome shotgun sequence.
ACCESSION   DATCGC010000112 DATCGC010000000
VERSION     DATCGC010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_367521"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(47..673)
                     /locus_tag="VIJ87_01095"
     CDS             complement(47..673)
                     /locus_tag="VIJ87_01095"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEY5443072.1"
                     /translation="MTNTEVFPIWQSTVGTKSKTEPVPLSDHALAISAAKGDMQAFEL
                     LYERHNRRVYSLCLRMTQNPVEAEDLAQEAFIQLFRKIGSFRGESAFTTWLHRLTVNQ
                     CLMHFRKRSVKLERTTEEGETPVQIVRGTENPNAMPVLDRIALDNALKQLPPGYRTVF
                     VLHDVEGHEHEEIAKILGVAVGTSKSQLHKARMKLRGILKSKRKFNKN"
     gene            complement(886..>1511)
                     /locus_tag="VIJ87_01100"
     CDS             complement(886..>1511)
                     /locus_tag="VIJ87_01100"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HEY5443073.1"
                     /translation="IVQVEGRGDSQGQLVADKIRFNESDMRASITTDTRVGPVEANQE
                     RIAGQIDELYAVAAEARSEAANANERISSLDDYDLQASTAVTFRVNSAVLSPEAKRQL
                     DEFAAKTTNAKAFMIEVAGHTDSTGGEAKNFRLSQERAESVVQYLAVAHKISLRRFVT
                     PMGYGKTEAVADNSTAEGRAQNRRVEVKMLLNRGMTQQPRATSAAKP"
BASE COUNT          333 a          418 c          370 g          390 t
ORIGIN      
        1 ctcagattgg cccggcgttc tggcactttg ttcagttgtc aattacctag ttcttattga
       61 actttctctt cgacttcaaa attccacgca gcttcattct cgctttgtgt aattgggatt
      121 tcgaggtacc cacagcaaca cccaggatct tagcgatctc ctcatgttca tgaccttcca
      181 catcatggag cacaaacacg gttcgatagc ctggcggcag ttgcttcaat gcgttgtcca
      241 gcgcgatgcg gtctaggacc ggcatcgcat ttggattctc agtgccgcgc acaatctgca
      301 cgggtgtttc cccctcttcg gtcgtgcgct cgagcttcac acttcgttta cggaagtgca
      361 tcaggcactg attcactgta aggcgatgga gccaggtcgt gaatgccgac tcacctcgga
      421 aactgccaat ctttcgaaag agttggataa acgcttcctg ggcgagatcc tctgcttcga
      481 ccggattctg ggtcatgcgc agacacaatg aatacacacg acgattatga cgctcgtata
      541 acaattcgaa ggcttgcata tcacccttgg ctgccgaaat tgccagcgca tggtctgaaa
      601 gtggtacagg ttctgtcttg cttttagtgc cgaccgtgct ttgccaaatt gggaagactt
      661 cagtgtttgt cataccaaca ctatcagcaa tctcggggcc acaagagccg ccaaaaaaaa
      721 cttcgacaaa aaccagaacc tttgaggctg tttgaaggtg ggagaacgga aagcgggtct
      781 gcagtgcgga aatcgtgtat tcggccagac ccgttcaaag aagcgaagca aaacaaagtt
      841 tttctaactt cgcctctttt gaacgttctg acactgttcc caaaactagg gttttgccgc
      901 tgacgtcgcg cgcggttgct gggtcatccc gcgattaagc aacatcttca cttcaacacg
      961 gcgattctga gctctacctt cggcagtcga gttgtctgcg acagcctcag tcttgccata
     1021 ccccatcggc gtgacgaaac gtcttagcga aatcttgtgg gcgacagcca ggtattggac
     1081 gactgattcg gctctctctt gactcaggcg aaagttcttc gcttcacctc cagtcgaatc
     1141 agtatggcca gcgacctcaa tcatgaaggc cttagcgttt gtagtcttcg cggcgaattc
     1201 gtccagctga cgtttggctt caggcgaaag caccgcgcta ttaactctaa aagttacagc
     1261 cgttgacgcc tgcaggtcgt agtcgtcaag cgatgagatt cgctcgttcg cgttcgcggc
     1321 ctccgaacgc gcctctgccg caaccgcgta gagttcatca atctgtccgg cgattctttc
     1381 ttgattcgct tccaccgggc ctacgcgcgt atccgtcgtg attgaggcac gcatgtcgga
     1441 ctcgttgaag cgaatcttat ctgcgaccag ctgaccctga ctgtcgccac gtccttcaac
     1501 ttgaacgatc a
//
LOCUS       DATCGC010000113         1317 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_1395, whole genome shotgun sequence.
ACCESSION   DATCGC010000113 DATCGC010000000
VERSION     DATCGC010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1317)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1317)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1317
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1395"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..531)
                     /locus_tag="VIJ87_01105"
     CDS             complement(<1..531)
                     /locus_tag="VIJ87_01105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HEY5443074.1"
                     /translation="MKSILCLMCMFVFCAFFIATPTASAQVQSSATLTWQDNSGNEQG
                     FGIEMLSPTDADFTEVATVGANITEFSLSLSGNYGDVFCFRVYAFNAEGDSPDSNIAC
                     KTLPDAPSLPAVTPPTTPTDLHATLVSAAVVRLAWDDVQDESQYLLERRLDNTTELQI
                     ILAKDQTSFTDHDVEKN"
     gene            1080..>1317
                     /locus_tag="VIJ87_01110"
     CDS             1080..>1317
                     /locus_tag="VIJ87_01110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443075.1"
                     /translation="MTRAKAARDSFMPIVANVMLFGTITVLETFENYVCFTRIQSLLD
                     RYADCSGTRMSGLSMANPSPTRDHDSELSQKLRER"
BASE COUNT          355 a          294 c          333 g          335 t
ORIGIN      
        1 atttttttcc acgtcgtgat ctgtaaaact cgtttgatct ttcgctagta taatctgcaa
       61 ctcggttgtg ttgtcgagcc gacgttcaag aagatactgg ctttcgtcct gaacatcatc
      121 ccacgcaagg cggactactg ccgcggaaac gagggttgcg tgcagatcag tgggagttgt
      181 cggtggagtc actgccggca gtgatggcgc gtcaggaaga gttttgcagg cgatgttgct
      241 gtctggagag tcgccttcgg cattgaacgc gtagacgcga aaacaaaaca catcaccgta
      301 atttccgctg aggctcaggc tgaattccgt tatattggcg ccgaccgttg ctacctccgt
      361 aaaatcagca tcggtcggcg acagcatctc gatcccaaaa ccttgctcat ttccggaatt
      421 gtcttgccac gtcaaagttg cagaagactg cacttgcgct gaggccgttg gcgttgcaat
      481 gaaaaaggcg cagaacacaa acatacacat caagcagaga atgcttttca tgaatcgtcc
      541 ccagtcgcat tgacaaattt cttcgcaccg gactgcaagg tgtgtaccat ttgagtagct
      601 gcaatacctt tcctgcgact tccgtcaaga aaaaactaat ctcttcaacc gtctgaacgt
      661 ttcgaagaat ttgaaataat tttgggaaaa tcattcggta ttgccgctgg ctgaaaaacg
      721 taggccaaag aatgcaatgc gattgaaggt aataacaggc agtggttaaa cggattctgt
      781 agaagactga gagcagaggt gatctggccg ccgaaagata ttacttcgtt gggtaataat
      841 taccgctaca gtcaatgatt gccaagttct tacaacaaac accacctcga ctgcgctata
      901 gttcggctct gttgatgatt agtaaagatt aggtcgtggc caagggaaat tcctggtttg
      961 aggtagctgg tagaggcggt gaggaatcct cggataagtt tatcgaataa tcgagagcag
     1021 gaggcgcttt cggtataatt tactggagat ctccgttatt ctacgagcga cattccacat
     1081 tgacacgagc aaaagcggcg cgtgacagtt ttatgccgat tgtggcaaac gtgatgctgt
     1141 ttggaaccat taccgtgttg gaaacatttg aaaattatgt gtgtttcacc cggatccaat
     1201 cactcctcga tcggtatgca gattgctcgg gaacacggat gtcaggttta agcatggcga
     1261 atccgagccc tacaagagat cacgattcag aactcagtca aaaactccga gaaaggc
//
LOCUS       DATCGC010000114         1408 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_34687, whole genome shotgun sequence.
ACCESSION   DATCGC010000114 DATCGC010000000
VERSION     DATCGC010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1408)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1408)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1408
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34687"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1363)
                     /locus_tag="VIJ87_01115"
     CDS             complement(<1..1363)
                     /locus_tag="VIJ87_01115"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5443076.1"
                     /translation="MSVWLIKLLTSFKPSVPLPLNIEFHTDWRVLSFTLLLSILTGVL
                     FGLVPALQASKNELVPALKNSQDEFNNSRKILSLRNALVIGQVTLSILVLVGAGLFLR
                     SLNRARAINPGFDAEHVLTLSFNTSAQGYDAVKAAQFYQQLTGRVRALPGVQNVSVAQ
                     SAPLSYFYAPAFSSPVVIEGREPAAGEDLPVIGNNTISPAFFQTLGISLLNGRDFTDQ
                     DREGSPRVVIVNETLARTFFPNENPIGRRLRVTRRGNQATTSEIVGVVRDSKYLSLGE
                     GPTPYLFVPYLQNPQPAMSMQVRTSGNPKDAIAVVRREVEALDPNLPPFNVMLLTENI
                     DISLFPARLGALLLGVFGLLALSIATIGIYGVISYGVSERTREMGIRMALGARAVDVL
                     RLVISQGMWLAVIGVALGSASALLSTRVIKSYLYDVSTADPLTFGGIAFLLIGVALLA
                     CYIP"
BASE COUNT          381 a          384 c          351 g          292 t
ORIGIN      
        1 cggggatata gcaagccaac aaagctacgc caatcaacag aaatgctatg ccgccaaacg
       61 tcaatggatc ggctgtgctt acatcgtaga gataactctt aatcacccga gtcgataaca
      121 atgccgatgc agatcctagt gcgaccccaa tcaccgcaag ccacatcccc tgcgaaatca
      181 ccaagcgaag aacatcgacc gcgcgcgcgc caagtgccat tctgattccc atctcacgcg
      241 tgcgttcgct gactccataa ctgatcacgc catagattcc gatagttgca atcgatagcg
      301 cgagcaaacc aaatacgccc agcaagagtg cacctaatcg cgccgggaaa agtgaaatat
      361 caatattttc agtgagcaac atcacgttga aaggtggaag gttcggatcg agtgcctcga
      421 cttcgcgacg cacgaccgca atcgcatcct taggatttcc actggtgcgc acttgcatgg
      481 acatcgcagg ttgtggattc tggaggtagg gtacaaacag atacggagtt ggaccttcac
      541 ccaacgacaa atacttgctg tctctcacaa cgccaacgat ctcactagtg gtggcttgat
      601 tgccgcgccg cgtcactcga agtcgtcgac cgattggatt ctcgtttggg aaaaaggtgc
      661 gcgccaaagt ctcattgacg atcaccactc gcggggaacc ttcacggtct tgatccgtaa
      721 agtcgcgacc gttcaacagt gaaatcccaa gcgtctgaaa gaacgctgga ctgatcgtgt
      781 tattgcctat gactggtaga tcctcgccgg ctgccggctc ccggccttcg ataacaaccg
      841 gcgacgagaa tgcgggtgca tagaaatagc taagcggggc cgactgggca acgctaacgt
      901 tttgcacacc cggtaaggct cgcacacgtc cagtcagttg ctgataaaac tgcgcggctt
      961 ttacagcatc gtaaccttgc gcagatgtat tgaacgacag cgtaagtaca tgctctgcgt
     1021 cgaaaccggg attgatcgct cgcgcgcggt tcagactcct caaaaacaat cccgcaccga
     1081 ccaacacaag gatcgagagt gtcacttggc caatcaccag cgcgttacgc aaactcaaaa
     1141 tctttcgact gttattgaat tcgtcctgac tgttcttgag cgccggcacg agttcatttt
     1201 ttgaagcctg gagtgcgggc acaagtccga aaagaactcc ggtaagaatt gagagaagaa
     1261 gcgtgaaact cagcactcgc caatccgtgt gaaactcaat attgagtggc aacggaactg
     1321 agggtttgaa cgaggtgagt agtttgataa gccaaacact caacagcaat ccagctaagc
     1381 cgccgaggca agccagcagg atgctttc
//
LOCUS       DATCGC010000115         2294 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_101230, whole genome shotgun sequence.
ACCESSION   DATCGC010000115 DATCGC010000000
VERSION     DATCGC010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2294)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2294)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2294
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101230"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..435)
                     /locus_tag="VIJ87_01120"
     CDS             complement(<1..435)
                     /locus_tag="VIJ87_01120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443077.1"
                     /translation="MKRCPQCHFIYPNEDEICDFDQAPLVDTAESEIAAITNTPERPA
                     LADLATTHSRRFESQKNRRTLPIAVALGLVLGLVVFGVYFAAHRQMTPQRVAEQANIK
                     PAQPPVQLPSPSPAQTLETEPTPENNAKVSNANAKTTAAHSAR"
     gene            573..1130
                     /locus_tag="VIJ87_01125"
     CDS             573..1130
                     /locus_tag="VIJ87_01125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443078.1"
                     /translation="MKSVKRASIYLLLAITLLGCSFLKKPAAKQEVQPTTKAEPTAQS
                     QPNQPPTVQGDLQVGQASGSYTAKGEVVELKYAYAGHGERFGNESIVILLTDKPIPPD
                     AISEEIKSQTLLQSEQLRGLEYVIDKDGMWVRFHPSQYQESSSNKLKDYSVDGNIVRG
                     TDDGGGNLSDGKYGRTVKFVAAFVN"
     gene            complement(1191..1766)
                     /locus_tag="VIJ87_01130"
     CDS             complement(1191..1766)
                     /locus_tag="VIJ87_01130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443079.1"
                     /translation="MKRCPQCEFIYEDDQSLCDMDGFLLVFDSQVLPKPKTPRKGSAT
                     TQWKSRVVTAMAALILATVLFLVYYVSTNQQPEAGTYPATVVTGTQPSSNASKSTSDS
                     PVNDAQPASNTIETKTPVSAPTPADASTKDNKVKSVPVTGAKEGKESTLKPKAKSTQK
                     TQSAAQAQNNDSKIGSLLKKTGKILKKPFKL"
     gene            complement(1958..>2294)
                     /locus_tag="VIJ87_01135"
     CDS             complement(1958..>2294)
                     /locus_tag="VIJ87_01135"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY5443080.1"
                     /translation="IRQVINHVNDGERVFLSRAFWFARGFKDALPGFDQDICVDAAGA
                     NAVSWTSLKDEFTNIRLSTLSFFENLPDTAWTQTGIASDYPFTVNGLAYIIAGHVAHH
                     RNVIAERYL"
BASE COUNT          519 a          537 c          642 g          596 t
ORIGIN      
        1 gcgagccgag tgcgccgcag tcgttttggc attagcgttt gataccttgg cgttgttttc
       61 aggggtaggt tccgtctcga gtgtttgagc cggcgaggga gaaggcagtt gaactggagg
      121 ttgagcgggt ttgatgtttg cttgttcggc cactcgttga ggagtcatct gccgatgcgc
      181 tgcaaagtaa actccaaaga ctacgagacc aagcactagc ccgagcgcta ccgcgattgg
      241 taaggttcga cggttcttct gactttcaaa tctccttgag tgagttgtcg ctaaatcggc
      301 taaggctgga cgctcaggag tatttgtaat cgcggcgatc tcagattcgg cggtgtcaac
      361 cagcggtgcc tgatcgaaat cgcagatttc gtcttcattc gggtaaatga aatggcattg
      421 ggggcagcgt ttcataaaac tattatgcct caggggtggg atttcagatt gttgaattct
      481 gctcaagaat gctttgttac gacaccactc gacgttctgt tgtaggattc ctcccgtgag
      541 tttgaatcaa cgttccgata ggagttctca gaatgaaatc ggtaaagcgt gcatcaatct
      601 atctattgtt ggccataacc ctcttagggt gttccttcct aaagaagccg gccgcgaagc
      661 aagaagttca gccgacaaca aaagcggagc cgacagcaca gagtcaacct aatcagccgc
      721 caactgttca gggtgacttg caagtcggac aggcgagcgg cagctatacg gccaaggggg
      781 aagtagttga gttgaagtat gcatatgccg gacacggtga acgctttggc aatgaatcaa
      841 tcgtgatcct attgacggat aagccaattc ctccagatgc cattagtgaa gagatcaaat
      901 cgcaaacgct gttacagagc gaacagcttc gaggccttga gtacgtgatt gataaggatg
      961 gtatgtgggt ccgattccac ccaagtcagt atcaggaaag ctccagcaac aagctgaagg
     1021 actactcagt ggatggcaac atcgtgcgcg gaacagacga cggtggtgga aatttgtccg
     1081 atgggaagta tggtcgtacg gtgaagtttg ttgctgcgtt cgtcaattaa atacatcccc
     1141 tttggtgatg cccaggctcc gccgtacacg agggcctcac tgaggtcacg ttaaagctta
     1201 aatggtttct tcaggatctt gccggtcttc tttagcagcg agccaatctt cgaatcatta
     1261 ttctgcgcct gagccgcgct ttgcgtcttt tgagtagact ttgccttggg ctttagggtc
     1321 gactctttgc cttctttcgc accggtaacc ggcacggact tcaccttgtt atcctttgtt
     1381 gaggcgtccg caggtgttgg tgctgacacg ggagtttttg tctcgatcgt atttgacgcg
     1441 ggctgagcat cgtttacggg cgaatcactt gttgacttac ttgcgtttga cgacggttga
     1501 gtgcctgtca caaccgtagc tgggtaagtc ccggcctccg gttgttggtt tgtcgacacg
     1561 taataaacca aaaagagaac ggtcgccagg ataagcgcgg ccattgcggt aacgacgcga
     1621 cttttccact gagttgtcgc cgaacccttg cgcggagtct tgggtttggg aagtacttgt
     1681 gagtcaaaaa caagcagaaa tccgtccata tcacacagac tctggtcgtc ctcatagatg
     1741 aactcacact gcgggcatct tttcatcgcg accctcctgg aagtcgagac gttgtttcgt
     1801 tggggcctgc ggaggtgaaa gtctgagtga gaataccgca gggctttaga gtaacacgga
     1861 tgcctgtcct tgcgttgggg aaattaggtt ttttgagtct tggggcgcga cttttcgcga
     1921 cctggcggca tttcccatcg ttttgggtgc ggttttctca aagatagcgt tcggctatga
     1981 cgttccgatg atgggcgaca tgccccgcaa taatgtaagc aagtccattt accgtaaacg
     2041 gatagtcgct ggcaatacca gtctgggtcc acgcggtgtc cgggagattt tcgaaaaacg
     2101 acaatgttga gaggcggatg tttgtaaatt cgtccttcaa acttgtccaa gagactgcgt
     2161 tcgcgcctgc cgcgtcgacg caaatgtcct ggtcgaaccc gggaagggcg tctttgaacc
     2221 ctcgggcgaa ccagaaggcc cgactcaaaa acactcgttc accgtcgttc acatgattga
     2281 ttacctgtcg aatc
//
LOCUS       DATCGC010000116         1183 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_167994, whole genome shotgun sequence.
ACCESSION   DATCGC010000116 DATCGC010000000
VERSION     DATCGC010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1183)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1183)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1183
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_167994"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..325)
                     /locus_tag="VIJ87_01140"
     CDS             complement(<1..325)
                     /locus_tag="VIJ87_01140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443081.1"
                     /translation="MPTTKHELLDWLMDVPEDAEIGTDGAGLALLAILGTNVHLLEVG
                     HIPNADELYAEAINQAMMERLRRIDAAGGETETAVIIVTFHGYISGIPSLFSTDFNTA
                     FIFKNK"
     gene            complement(456..752)
                     /locus_tag="VIJ87_01145"
     CDS             complement(456..752)
                     /locus_tag="VIJ87_01145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443082.1"
                     /translation="MKNVFSLRKRSFLSPVSTGFTSHIFAEVESSNEGEYRWGHNMLT
                     IADCRRRVQIEFFLGTKRERRRSLTKINLLIAILTRFRDALTKEIALIEKAKAK"
     gene            complement(903..>1183)
                     /locus_tag="VIJ87_01150"
     CDS             complement(903..>1183)
                     /locus_tag="VIJ87_01150"
                     /inference="COORDINATES: protein motif:HMM:NF015734.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PASTA domain-containing protein"
                     /protein_id="HEY5443083.1"
                     /translation="IALLGLSIDVQRERRSRPAQTKVPAIKGLTYEDAERKLHAVNLN
                     IRLLATRHDPAVQPGLIIDQTPAPGEEVIVGYSVGVTINKKDLAGPGP"
BASE COUNT          274 a          283 c          304 g          322 t
ORIGIN      
        1 ctttattctt gaatataaac gccgtattga agtctgtaga gaacaggctc gggatgcctg
       61 atatgtaacc gtgaaatgtc actattatta cggctgtctc cgtttctcca cctgctgcat
      121 caatccgccg tagtcgttcc atcattgcct gattgatcgc ctcagcatag agttcgtccg
      181 cattgggaat gtgaccgacc tctaacaggt gaacgttggt gccaagaatt gccagcaaag
      241 ctagtccagc tccgtcagtt cctatttcgg catcttctgg tacatccatt aaccaatcga
      301 gcagttcatg tttagtcgtt ggcattagtt gcctctttct tctcgtgcag agttgactcg
      361 agtaagtgtt gatttcgccg gccaactcac ttccactcgt caactgaata tgagtggctt
      421 acctgcaagc tggcccgcga ttgttttcca ggaacctatt tggcttttgc tttttcgatt
      481 aacgcgatct ctttggtgag cgcgtcacga aagcgcgtga gaatggcaat gagcaagttg
      541 attttggtaa gggatcggcg gcgttctcgc ttagtgccca aaaagaattc aatctggact
      601 cggcgccggc aatcggcgat ggtaagcatg ttgtgtcccc acctgtattc gccttcgttg
      661 gaggattcaa cttcagcgaa gatatgcgac gtaaagccgg ttgagacggg tgacaggaat
      721 gaacgcttgc gaagagagaa aacatttttc atgttagcaa cctcggagga ataaatacgt
      781 gaaaacctcc gtgtctctgg acaaagcgat tgcagtgtcg cgccaattga gagacaagga
      841 ggttggatac gctaagaacg cagcgcgtgt ggcttatttg gtccaatgca tgagctttga
      901 gtctatggac cagggccagc gagatccttt ttgttaatcg tgactccaac tgagtagccg
      961 acaatcactt cctctccagg tgcaggagtt tggtcaataa tcaatccggg ctgaacggcc
     1021 ggatcgtgac gtgtcgccaa caggcgaatg ttcaagttaa cggcgtgaag cttcctctcg
     1081 gcgtcttcat aggtcagtcc tttgattgct ggcaccttgg tttgagctgg tctagaccga
     1141 cgctcacgtt ggacgtcaat actcaggccc aacagcgcaa ttg
//
LOCUS       DATCGC010000117         1242 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_334322, whole genome shotgun sequence.
ACCESSION   DATCGC010000117 DATCGC010000000
VERSION     DATCGC010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1242)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1242)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1242
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334322"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1048
                     /locus_tag="VIJ87_01155"
     CDS             <1..1048
                     /locus_tag="VIJ87_01155"
                     /inference="COORDINATES: protein motif:HMM:NF025930.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443084.1"
                     /translation="ESDADAIRKVLGKKNNEDWQAVKNGEGEWQDKGFFDLARRVMDE
                     GSAQVIWNRLEEFAKYSFNKSHSIAYATIAFRTLYAKYYAPTEFIMACIRTNNEDAAL
                     YVAEGRRIGVPVLPPDIRKSGAEVGVTDGAIYYGLANVKGVGLSSARYLSQLVKTHSC
                     FTPADVETALEVEDAAWRKRKEAHQANNVTAFRERSPRSQCRSNIIEALERVGAFDNY
                     KERTVSLAEQQAAETELLGIVLSDNTQEALDRNSDLVEECDDYQEFIDSISAGARAKL
                     AGIVSNIRPTQTKATGSDMAIVTIEMGQDNIEFAVFPRQWESYKFLWKERTAGIFNLK
                     KSDRGTFFEDGIKL"
BASE COUNT          365 a          272 c          320 g          285 t
ORIGIN      
        1 tgagtctgat gctgatgcga tccgtaaggt actaggcaag aagaataatg aggattggca
       61 agcggtcaag aatggtgaag gggagtggca agataagggc tttttcgatc ttgctcgccg
      121 tgttatggat gagggttctg cgcaggttat atggaaccgc cttgaggaat tcgctaagta
      181 cagcttcaac aagtcgcact ccatcgctta tgcaacgatt gcgtttcgta cgctctatgc
      241 gaagtattac gcgccaacag aattcatcat ggcatgtata cgaaccaata acgaagatgc
      301 agctttatac gtggctgagg gacgacgcat cggagtgcca gtattgcctc cggatattag
      361 aaaatccggt gctgaggttg gcgttaccga tggagctatc tactatggac tcgcaaacgt
      421 taagggtgtg ggcctatcat ctgcacggta tctctcccaa cttgtcaaaa cacattcatg
      481 ctttacgccc gccgacgttg aaacggcgtt agaggtagaa gatgcggcgt ggcgaaagag
      541 aaaagaggct catcaggcta ataatgtcac agccttccgc gagcgctcac cccgtagcca
      601 gtgtcgatcc aatatcattg aggcccttga gagagttggg gcctttgaca attacaaaga
      661 aagaactgta tctctggctg aacagcaagc cgccgagact gaactcttgg gcattgttct
      721 tagcgacaac actcaggaag cgctagatag aaactccgat ctggtagaag aatgtgacga
      781 ttaccaggag tttattgatt ctatctcagc gggtgcgcgt gctaaactag caggtatagt
      841 ttcaaatatt cgtccaactc aaacgaaggc gactggctct gacatggcta tcgtcaccat
      901 cgaaatgggg caggacaaca ttgagttcgc tgtattccca cgtcaatggg agtcctacaa
      961 gtttttatgg aaggaacgaa ccgctggaat attcaacctt aagaagtcgg acagaggaac
     1021 cttctttgag gacggaatca aactctaaac tgcatcgagc agtccgagcg caacagaagg
     1081 ccaagctaca aacttacatg gccttaatgg aacaacgtct acctatcccc gctgacttaa
     1141 gaagggacgt agaagagaaa atacctgtaa ccagaaagta tctaagagat tggctaacgt
     1201 atacgacata gcaaagaaat acgagaagaa atatgggcat ca
//
LOCUS       DATCGC010000118         1140 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_434322, whole genome shotgun sequence.
ACCESSION   DATCGC010000118 DATCGC010000000
VERSION     DATCGC010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1140)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1140)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1140
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_434322"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1079
                     /locus_tag="VIJ87_01160"
     CDS             <1..1079
                     /locus_tag="VIJ87_01160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443085.1"
                     /translation="RAQLTERKDTLADSVNSLQQDIQESARAMGAGQGQQRAARQMKD
                     AADALARDRVADRIREGKQNLNGSQQGQQGQGSDERAIERSLNNVSERLQAAEQSARG
                     SNGSSAEENLDRTRQLADSLDSLRRRLDENAARRNGKQNGQQGNQQQNGQQGQQQGQQ
                     SSQQGQQGQQGERGQQGQNGQQGQQGQEGKGQGQQQGRQQSGQNQGGQQQAGGSQNGG
                     QSFGDRQRMNGAPQWGPMGGDWGDNRQLPSEVRERLREAQDLRREFGGTTTGAARQLD
                     DVIDKLKQLADGHMEGDAATAALLKADVVEPLRQLELELSKQIQAQSGRTNLRLRDEG
                     AAPEKYRKAVEEYYRKLSGAKQRQ"
BASE COUNT          340 a          263 c          356 g          181 t
ORIGIN      
        1 cacgcgcaca gttaaccgaa cggaaggata cgctggcaga tagcgtgaat agtttgcagc
       61 aggacatcca ggagtcggca cgtgcgatgg gtgcgggaca gggtcaacaa cgcgccgcac
      121 gtcaaatgaa ggatgcggct gatgcactcg cgcgtgatcg agttgcggat cgaattcgtg
      181 aaggcaagca aaatctcaac ggctctcaac aaggtcaaca gggccaggga tcagacgagc
      241 gagcaattga acgaagcttg aataatgttt cagagcgact ccaggctgcc gaacaaagcg
      301 ctcgcggatc aaacggttcg agtgccgagg agaatcttga tcgcaccagg cagcttgccg
      361 acagtctcga ttcgctgaga cgtcgacttg acgagaatgc cgctcgacga aacggaaaac
      421 aaaacggaca acaaggtaat caacagcaaa acgggcaaca gggacaacaa caaggtcagc
      481 agtcgtcgca gcagggtcag caaggtcaac agggcgaacg cgggcaacaa ggacaaaatg
      541 gacagcaggg acaacaagga caagaaggaa aaggtcaggg tcaacaacag ggccgccaac
      601 agtcaggcca aaaccaaggt ggacaacagc aggctggtgg ttcgcaaaac ggtgggcaat
      661 cattcggtga tcgacaacga atgaatggag caccgcaatg gggaccgatg ggcggcgact
      721 ggggagacaa tcgtcaactt ccctctgagg ttcgtgaacg gctccgagag gcccaggatc
      781 tacgacgtga atttggtggg acaaccactg gagcagcccg acaactcgac gacgtaatcg
      841 acaaattgaa acaactcgcc gatggtcaca tggaaggtga tgcagcgacg gcagcgttgc
      901 tgaaggcaga tgtcgtcgag cccttgcgac aacttgaatt ggagttgagc aagcagattc
      961 aagcgcaaag tggacgaaca aatctgcggc tacgagacga aggcgccgct cctgagaagt
     1021 atcgcaaggc agttgaggag tattaccgga aattgtcagg agcgaaacag agacaatagg
     1081 ggtgttaggt gtcaggtgtc aggtgttagg ttttggactt tggactttgg actttggact
//
LOCUS       DATCGC010000119         1030 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_267866, whole genome shotgun sequence.
ACCESSION   DATCGC010000119 DATCGC010000000
VERSION     DATCGC010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1030
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_267866"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..225)
                     /locus_tag="VIJ87_01165"
     CDS             complement(<1..225)
                     /locus_tag="VIJ87_01165"
                     /inference="COORDINATES: protein motif:HMM:NF037181.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443086.1"
                     /translation="MKKPETIYACQSCGHQSRKWLGKCPECGEWNSLVEERAQPSKKG
                     SARTSFSLREVTAVPYTDIEPQDDVRVSSGV"
     gene            complement(413..769)
                     /locus_tag="VIJ87_01170"
     CDS             complement(413..769)
                     /locus_tag="VIJ87_01170"
                     /inference="COORDINATES: protein motif:HMM:NF015893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase family protein"
                     /protein_id="HEY5443087.1"
                     /translation="MSETITVYEKPTCTKCREMDKFLRERGVDFSKVNYYIEPLTKKK
                     LTELVRKMNISPRELLRKSEPVYRELGIATGKFSDAQLISLMVEHPDLMQRPIIERGE
                     RAVLGRPTENVEELLK"
BASE COUNT          238 a          275 c          222 g          295 t
ORIGIN      
        1 cacaccggat gacacgcgca cgtcgtcttg cggttcgata tccgtatacg gaaccgcggt
       61 cacctcgcga agactgaaac tggttcgcgc acttcccttc ttggacggct gtgcgcgttc
      121 ctctacgagt gagttccact caccgcattc cggacacttg cccaaccact ttctggactg
      181 atgcccacaa ctctgacagg cgtaaattgt ttctggtttt ttcaaatgaa ttggtctttg
      241 gttttcgttc tttggtcttg tcctctgtgt cctctgcgtc tccgtgacct ctgagtttaa
      301 aaacctgcgt ccaaaaaagt aacgcagagg tcacagagac gcagaggaca cagagacacc
      361 tgtcgagtta tttcgaaggc ccaaggccaa atgccaaaga ccaaagaccg atttatttga
      421 gtaactcttc tacgttctca gtgggccttc ccaacacagc acgctcacca cgttcaataa
      481 tagggcgctg catcagatct ggatgctcaa ccatcaaaga gatcaactgt gcatcgctaa
      541 attttccggt cgctattcca agctctcgat agaccggctc actcttacgc aacagttccc
      601 tcgggctaat attcatcttg cgcaccaact ccgttagttt cttttttgtt aatggctcga
      661 tgtagtaatt cacttttgag aaatcgacgc cgcgctcacg cagaaacttg tccatctcgc
      721 gacacttggt gcatgttggt ttttcgtaaa ctgttattgt ttcagacata gttatttcga
      781 tttttgagct ttgtactttt aacgctaccg cgtgagttac gatatcccag acaaagcaca
      841 aagttccaag tacaaagctc gacctattct tacggaaata ttcctctaac gctcgttgct
      901 tctacaacgc gacctaccgc gagtatatac gcaccggtgc gcatatcggt gttgtacttc
      961 tcggccgtgc tatggacggc gttgaaggct gtagtgattg tcgattccag cgtgtcatta
     1021 atctgacgtt
//
LOCUS       DATCGC010000120         1102 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_467516, whole genome shotgun sequence.
ACCESSION   DATCGC010000120 DATCGC010000000
VERSION     DATCGC010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1102)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1102)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1102
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_467516"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..747)
                     /locus_tag="VIJ87_01175"
     CDS             complement(<1..747)
                     /locus_tag="VIJ87_01175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443088.1"
                     /translation="MKFTMISIKKYLPLVLALFGLIAIAAAPREAVGSLPADPALYST
                     DWRTTGPPGGDVRGLVVDPTNPDRFYFGTLDGQIYTSADAGKQWQLLYNFGKPRLFVD
                     HIIVDPRNPRVLYVGAHRHKEPGGFFKSTDGGTTFRESPELKNEAIHSLAQSESDPGT
                     LIAGTFNGIFRSDNSGDTWQQLPTSNVQNLFHIESLAIDPRTANIIYAGTWYLPFKST
                     DGGQNWRSIKTGIIDDSDIFAIDIDPRDPNH"
BASE COUNT          276 a          264 c          282 g          280 t
ORIGIN      
        1 gtggttagga tcgcgcggat cgatatcgat ggcaaagatg tcggaatcat cgatgattcc
       61 agtctttatc gatctccagt tttggccgcc atctgtcgac ttaaatggca aataccacgt
      121 cccggcgtaa ataatattgg cggttctggg atcgattgct aaggactcga tatggaaaag
      181 gttctgaacg ttagacgtag gcagttgctg ccacgtgtcc ccggaattgt cagatcggaa
      241 aatgccattg aacgtgcctg caatgagagt gcctgggtct gattcagatt gtgccaatga
      301 atgaatcgct tcattcttta actccggact ctcgcggaaa gttgttccac catcagtcga
      361 cttaaagaag ccccctggtt ccttgtgacg atgagcacca acatagagaa cacgaggatt
      421 tcttggatcg acaatgatgt gatctacgaa caggcgtggt ttaccgaagt tgtagagaag
      481 ctgccactgc ttgccggcat cagcagacgt ataaatctga ccgtcgagag taccaaagta
      541 gaaacgatcc gggtttgtgg gatctacaac gagaccacgc acatctcctc ctgggggtcc
      601 ggtcgtccgc cagtctgttg agtagagagc aggatctgcg ggcaaactac caaccgcttc
      661 ccgcggagct gctgcaatcg cgataagccc gaataaagcc aatactaggg ggaggtattt
      721 cttaatacta atcatcgtga atttcatcca gaaggtttta actctatcag gagcgcctgc
      781 gctcaccacc ttttcagttt attacaattt gcttgctttg tgttcaaaag cttacgcaat
      841 cgcgactagg atgcttaaga attaatcgca agttgtactt tcaaaggtct tggcgtcccg
      901 ggagggcgat aaaaaaaata acgggcgatg cttcgaaaag aaagcatcgc ccgctgttgt
      961 tgaggtttgg caaacgccaa gcctattagt tgttattcgt cgtcacctcg accacgacgt
     1021 cgttttggag ctgctttctt gcactccgga caaggcgaca cgacacctgg ttcgctagca
     1081 gccggtgctg ttgcaccgct cg
//
LOCUS       DATCGC010000121         1429 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_134534, whole genome shotgun sequence.
ACCESSION   DATCGC010000121 DATCGC010000000
VERSION     DATCGC010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1429)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1429)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1429
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_134534"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..152
                     /gene="tuf"
                     /locus_tag="VIJ87_01180"
     CDS             <1..152
                     /gene="tuf"
                     /locus_tag="VIJ87_01180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003640798.1"
                     /note="EF-Tu; promotes GTP-dependent binding of
                     aminoacyl-tRNA to the A-site of ribosomes during protein
                     biosynthesis; when the tRNA anticodon matches the mRNA
                     codon, GTP hydrolysis results; the inactive EF-Tu-GDP
                     leaves the ribosome and release of GDP is promoted by
                     elongation factor Ts; many prokaryotes have two copies of
                     the gene encoding EF-Tu; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HEY5443089.1"
                     /translation="AGVEMVMPGDNVAMEIELIAPIAMEKGLRFAIREGGRTVGAGTV
                     SEVIE"
     gene            243..395
                     /gene="rpmG"
                     /locus_tag="VIJ87_01185"
     CDS             243..395
                     /gene="rpmG"
                     /locus_tag="VIJ87_01185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002628232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEY5443090.1"
                     /translation="MPRDNIVLQCTDCKSRNYVTTKNKKTTPDRLEFSKFCRRCRKHT
                     DHKETK"
     gene            484..559
                     /locus_tag="VIJ87_01190"
     tRNA            484..559
                     /locus_tag="VIJ87_01190"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:518..520,aa:Trp,seq:cca)
     gene            600..938
                     /gene="secE"
                     /locus_tag="VIJ87_01195"
     CDS             600..938
                     /gene="secE"
                     /locus_tag="VIJ87_01195"
                     /inference="COORDINATES: protein motif:HMM:TIGR00964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HEY5443091.1"
                     /translation="MAETDNPDVPIVAPRAAQFGEGPEGKAARRERGQSGQPSGPSRM
                     IQYLHDVRAEMKRVSWPSLNEVKNTTIITLIAVIFFAVYLFAVDQGLSRLIIGLDWLI
                     EKIARFLGLA"
     gene            952..>1429
                     /gene="nusG"
                     /locus_tag="VIJ87_01200"
     CDS             952..>1429
                     /gene="nusG"
                     /locus_tag="VIJ87_01200"
                     /inference="COORDINATES: protein motif:HMM:TIGR00922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HEY5443092.1"
                     /translation="MQQWFILHTYSGHEKKVRDSLKARIRDTDLQSEINEVLVPTETV
                     VEMRGNKRIESSRMFYPGYVLVQIECDERGHIPDNVFHLIKSTPKVTGFVGGHNPTPL
                     TPQEVDQIVHNVTEAAEKPKPKFSYAAGETVRIKSGPFQSFTGKVEEVNEDKSTLKV"
BASE COUNT          380 a          319 c          403 g          327 t
ORIGIN      
        1 cggccggagt ggagatggtg atgcctggcg acaacgtggc gatggagatt gaattaattg
       61 cgccaatcgc gatggagaag ggactgcgct tcgcaattcg tgaaggtggt cgcacggttg
      121 gtgctggcac cgtttcggaa gttattgagt aaaggcattg tcgattgcca attaccgatg
      181 gccaattgct ggcccggtga aaacaaattg gccatcggca atcggaaatt ggaaataaga
      241 aaatgccgcg agacaacata gtacttcagt gtaccgactg taagagccgc aactacgtta
      301 cgaccaagaa taagaagacc acgcctgacc ggcttgagtt tagtaagttt tgtcgccgtt
      361 gccgcaagca cactgatcac aaagagacca agtgaaacca ttgcagatct aagatttcag
      421 atttcagatt caagaacagt tttagcaatc tgcaatcggc aatcaacaat ctgaaatcac
      481 tagaggggta tagtgtcaac ggttagcacg tcggtctcca aaaccgaaag tccgggttcg
      541 aatcctggta cccctgccac attgaattga gaacgcggca aagagaagtg caaagaacta
      601 tggctgaaac agataatcca gacgtcccaa ttgttgcgcc tcgcgccgct cagttcggtg
      661 agggccccga aggcaaggcc gcgcgtcgcg agcgcgggca aagcgggcag ccgtctgggc
      721 cgagccgcat gattcagtac ttgcatgatg ttcgcgcaga aatgaagcgc gtgtcctggc
      781 cttctctgaa tgaagtgaag aacacgacca ttatcacttt gattgctgtc atattcttcg
      841 ctgtttactt gttcgcggtt gaccaggggt tgtcgcgatt gattattggg cttgattggt
      901 taattgagaa gattgctcgg tttttagggt tggcctgaga ggaagaccta gatgcagcag
      961 tggttcatac tacatacgta ctccgggcac gaaaaaaagg tgcgcgacag tttaaaggcg
     1021 cgcattcgag acaccgatct gcagagtgaa atcaatgagg tgttggttcc gaccgagacc
     1081 gttgttgaaa tgcgtggcaa caagcggatc gagtcgtcgc gtatgttcta tcccggttac
     1141 gtgctggttc aaatcgagtg cgacgaacgc ggtcacatac cggacaacgt gtttcatctg
     1201 attaagtcga ctccaaaagt aacggggttc gttggcggtc ataacccgac gcctttgacg
     1261 cctcaggaag ttgaccagat tgttcataat gtgacggaag ctgcggagaa gccaaaaccg
     1321 aagttctcgt acgcggccgg cgaaacggtt cgcatcaaat cgggtccatt tcagagtttt
     1381 acaggcaagg ttgaagaggt taacgaagat aagtcgacct tgaaggtca
//
LOCUS       DATCGC010000122         1750 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_300999, whole genome shotgun sequence.
ACCESSION   DATCGC010000122 DATCGC010000000
VERSION     DATCGC010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1750)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1750)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1750
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300999"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(259..1650)
                     /locus_tag="VIJ87_01205"
     CDS             complement(259..1650)
                     /locus_tag="VIJ87_01205"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY5443093.1"
                     /translation="MKIHFLGAAGDVTGSAYHLVTKDANVLVDCGFFQGRKEEKAKNR
                     RKEQIEGGKLDAVVLTHGHLDHIGRLPLLTRNGYTGPIFATKPTIELATIVLKDSLGL
                     QSSDLKRENKKRAKAQLPPLETLFEETDVRNLGPLVNLVKYNQRFQVAPGIEGRLVDA
                     GHVIGSASVELTVSENGHKKIVVFSGDLGPRGAPLLNDPVPFEKADVVIMESTYGDRN
                     HRSLHETAVEGRKIIAKAIENKAKILVPVFAIGRTQLLLYLLAGAFHRKMLPQFPIYI
                     DSPMAIEATSIYRKNNELFDAEALAMVESGELRRQLSCVYPCAKAADSKALNDVEGPC
                     LIMAGNGMCNGGRIAHHLRHNLPIPETAVLIVGFQSHGSVGRRLVDGAKKVKLWGEEI
                     PVRASIHTMGGFSAHADQSNLLDWFSVVAPSKPRTIITHGEDRAREALSERIYSSFGL
                     TAERPALGDVIEI"
BASE COUNT          399 a          471 c          417 g          463 t
ORIGIN      
        1 tactcgataa cgatctcgct tcgccggttg cagacgtgtc agattattaa caacatccca
       61 aaggcccagc accgaatcaa cgagcacttt tttgacggcc tcttcatcgg caagactaac
      121 ggcgttgttt cgttgtgtta catcggttgt agtcatcatt gcgctcctct ttggagtgcg
      181 gcgccttgtc gccgcttttt acttgcacgt aacgcaaacc taaatcagaa agcggcgaca
      241 aggcgccgca ctccagattc aaatctcgat cacatctccg agtgccggac gttcagctgt
      301 caatccaaaa cttgaataga ttcgttctga cagtgcttcg cgagcacggt cttcaccgtg
      361 agtgataatc gtgcgcggtt tcgagggagc gacgacacta aaccagtcga gtaagttgct
      421 ctgatcagca tgggcactga agccacccat ggtatgtatt gacgcgcgca ccggtatctc
      481 ctctccccat aacttaacct tcttcgcgcc atcgaccagt cttcgaccaa cgctgccgtg
      541 cgactggaac ccaacgatca gcacggcagt ctccggtatt ggcaggttat gacgcagatg
      601 atgggcgatg cgtcccccgt tacacattcc gttgccagcc ataatcaggc acggtccttc
      661 gacgtcgttg agcgcctttg agtccgctgc ctttgcgcac ggataaacgc aggaaagttg
      721 tcgtctaagc tcaccggatt cgaccattgc cagtgcctca gcatcgaaga gctcattgtt
      781 ttttctataa atgctcgtgg cctcaatggc cattggactg tcgatgtaga ttggaaattg
      841 tggcagcatc ttcctgtgga aagctccggc caacaaatag aggagcagtt gagttcgtcc
      901 gatagcaaac accggtacta agatcttggc tttattctcg attgccttgg caattatctt
      961 tcttccctct actgcggttt catgtaacga tcggtgattt cgatctccat acgtggattc
     1021 catgatcaca acgtcggctt tttcaaacgg cactggatca ttcagcagtg gtgcaccgcg
     1081 tggcccaagg tcgcctgaaa agacgacgat tttcttgtga ccattctccg agacggttag
     1141 ctcaacgctg gctgaaccga tgacgtgccc cgcatcaacc agtcgacctt caattcctgg
     1201 agcaacctga aaacgctggt tgtatttcac gagattgacc aacggcccta gattacggac
     1261 gtcagtctct tcgaatagag tttccagtgg gggtaactgc gcttttgccc gtttcttgtt
     1321 ttcgcgtttt agatccgacg attgcagacc gagagaatcc tttagaacaa tggttgccag
     1381 ttcgattgtc ggcttagttg caaaaattgg cccggtatat ccatttcgag taagcaaagg
     1441 taaacggcca atgtgatcca ggtgcccgtg tgtaaggaca acggcatcca gttttccacc
     1501 ttcaatctgt tccttgcgtc gattctttgc tttttcttct ttgcgcccct ggaaaaaacc
     1561 acaatcaacg agaacgttcg cgtctttcgt aacaagatgg tacgcggatc cagttacatc
     1621 gccggctgcg ccaagaaaat gtatcttcat cgatactcct aagccgttca ccattgcgag
     1681 gtgacgtatc tctcaaggct ttcgccgtaa gggttagcta gctttcgtga tttaagaacg
     1741 gccagcgcca
//
LOCUS       DATCGC010000123         1108 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_467531, whole genome shotgun sequence.
ACCESSION   DATCGC010000123 DATCGC010000000
VERSION     DATCGC010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1108)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1108
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_467531"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..729)
                     /locus_tag="VIJ87_01210"
     CDS             complement(<1..729)
                     /locus_tag="VIJ87_01210"
                     /inference="COORDINATES: protein motif:HMM:NF024870.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY5443094.1"
                     /translation="MPTMDSVNFDSLYCMFKGEPGTRKSTQALSFPGPQFWFSWDRKM
                     NGIYLPMKKWGVDPKSVTYEDFDNWNKPKQMLEKFQADCPYRTLVFDSLTSMADMTLR
                     QTLQMKYGMQRKSGASAGKLIAGIAVNEIEDYNAESAALQELIALTKDINAFHKVNII
                     LIAHVVQAEYRNTTNNTTHISRTIVTAGKKVAPKIPAYCGEVYHFNIDKGFVEGGEGK
                     YTLLTEHTGDDFARSALGLPNKIEF"
     gene            complement(732..896)
                     /locus_tag="VIJ87_01215"
     CDS             complement(732..896)
                     /locus_tag="VIJ87_01215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443095.1"
                     /translation="MKTVAELLADLADLPLNAPVRVVYEVLIQEETSYERCEIHAVRQ
                     EGYEVIISLE"
     gene            complement(896..>1108)
                     /locus_tag="VIJ87_01220"
     CDS             complement(896..>1108)
                     /locus_tag="VIJ87_01220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443096.1"
                     /translation="QSEILPYYAYKYIQFSESGYWPPNYTHCDNVYGQCQFKNVCEAD
                     RGMREEVLRTDFMIGPVWDPTNKDVE"
BASE COUNT          274 a          290 c          235 g          309 t
ORIGIN      
        1 gaactcaatc ttgttgggga gacctaatgc ggacctcgca aagtcatctc ccgtatgctc
       61 ggtgagtagc gtgtatttac cttcacctcc ttctacgaat cccttgtcaa tattaaagtg
      121 atacacctct ccacaatagg caggtatctt gggggcaact ttcttcccag ccgtaacaat
      181 tgtacgagag atgtgagttg tgttgttggt ggtattgcgg tattccgctt gaaccacatg
      241 cgcaatgaga atgatattaa ctttgtggaa agcgttaatg tccttcgtaa gcgcaatgag
      301 ttcctgtaga gccgccgact cagcattgta atcctcaatc tcattgactg caattcctgc
      361 aatcaacttg cctgcactag cacccgactt acgttgcata ccatatttca tctgcaacgt
      421 ctgcctgagt gtcatgtccg ccatgctggt cagactgtca aatacgagag tgcgataagg
      481 acagtcagcc tgaaacttct ccaacatttg tttcggctta ttccagttat cgaagtcctc
      541 gtatgtcacg gacttagggt ccacacccca cttcttcatg ggcagataga tgccgttcat
      601 cttcctgtcc caactgaacc agaattgtgg tccagggaat gatagagcct gagttgattt
      661 acgagtcccc ggctcaccct tgaacatgca gtagagtgaa tcgaagttca cactatccat
      721 tgtcggcata gttactccag tgagataatg acttcgtagc cttcttgccg aacagcatga
      781 atctcacacc gttcgtatga tgtttcttcc tgaatcagca cctcatacac cacacgcaca
      841 ggcgcattca gtggaaggtc agctaagtcc gctaacaact ctgctacagt tttcattatt
      901 ccacatcctt attagttggg tcccacacag ggccaatcat gaagtcagtc ctcaacactt
      961 cctccctcat acctctgtca gcttcgcaca cattcttgaa ctgacactga ccatacacgt
     1021 tgtcacagtg cgtgtagtta ggaggccagt atccagactc cgagaactgg atgtacttgt
     1081 atgcgtagta cggaaggatt tcagactg
//
LOCUS       DATCGC010000124         1211 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_467544, whole genome shotgun sequence.
ACCESSION   DATCGC010000124 DATCGC010000000
VERSION     DATCGC010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1211)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1211)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1211
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_467544"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(300..692)
                     /locus_tag="VIJ87_01225"
     CDS             complement(300..692)
                     /locus_tag="VIJ87_01225"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY5443097.1"
                     /translation="MSKYKPDGWHSVTPRLFADDVPGLVEFLKQAFKAEGDAHIEPCQ
                     LRIGDSLVMVSGTGVRDVMPAFLYLYIENIDDTYQRAITAGAESLEAPQDMPYGDRRA
                     MIKDPGGHTWQIATHNEEAFQAFLKARS"
     gene            complement(699..989)
                     /locus_tag="VIJ87_01230"
     CDS             complement(699..989)
                     /locus_tag="VIJ87_01230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443098.1"
                     /translation="MNKPIWNFEQEPSNEPIDETAINLRAYFDAIPDEKLKQYSPEWS
                     DEQTIDWDNNFRDDGNLMLLCCERDVEVNEYRVVLEKCIDYRNRVRAAKITE"
BASE COUNT          268 a          311 c          294 g          338 t
ORIGIN      
        1 gagtctcttg caaaagtttg aaatcgtcac gttcgaagcc agagtgcggg ctccctctca
       61 ttctccccaa gcttcagctt ggggttaatc cccgcccttt accaatacca aggaaccgtt
      121 tcaacggttt tgcgcggtgt gccaaatgaa tcgccaatga aactttggcg gggagcttgg
      181 ttggttcgaa actcgtaaac cgttaaaacg gttcctcaaa attgggctct accgtaaccc
      241 caggctgaag cctggggaga atgagactgt ttacaagagg ctctgaagca tatcggacat
      301 taggagcggg cttttagaaa cgcttgaaac gcttcttcat tgtgcgttgc gatttgccag
      361 gtgtgtccgc cgggatcttt gatcatcgcg cggcgatcgc catagggcat atcctgcggc
      421 gcctcgagtg attcagctcc cgctgttatg gctcgttggt acgtgtcgtc aatattctcg
      481 atatacaagt aaagaaacgc aggcatgaca tcgcgaacac cggtaccgct caccataacc
      541 agcgaatcgc caatcctgag ctgacaaggc tctatgtgag cgtcgccctc ggccttgaaa
      601 gcttgcttca ggaattcgac aaggcccggc acgtcatcgg caaacaatct gggcgtcacg
      661 ctgtgccaac cgtctggttt gtatttactc attcgtcttt actccgttat ctttgcagca
      721 cgaacgcgat tgcggtagtc aatgcatttc tcaagtacta cccggtattc attcacctcg
      781 acatcgcgtt cgcaacacag caacatcaaa ttgccatcgt cacgaaaatt gttatcccaa
      841 tcgatcgttt gctcgtcgct ccattccggc gagtactgct tgagcttttc gtctggaatc
      901 gcgtcgaagt aagcgcgtaa gttgattgct gtttcgtcga ttggttcgtt tgagggttcc
      961 tgctcaaagt tccagatagg tttgttcatc ggcttggtca ttctatggtg tgagcctaac
     1021 gctaccgcgt cgtggtaatg acttcaatcc ttcgctgaga tgtttacgaa acttgacgag
     1081 taccggtgtc aatgctagtt taccgaccgt tcggtagctt cgctggcaat tgtatctcga
     1141 tccgtttctc cgcttcaatt tgatagttaa tagaggagat tcctaccatg aaactacttt
     1201 cagtcctgtt g
//
LOCUS       DATCGC010000125         2012 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_201301, whole genome shotgun sequence.
ACCESSION   DATCGC010000125 DATCGC010000000
VERSION     DATCGC010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2012)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2012)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2012
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201301"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(143..658)
                     /locus_tag="VIJ87_01235"
     CDS             complement(143..658)
                     /locus_tag="VIJ87_01235"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HEY5443099.1"
                     /translation="MQIVLQSCVVRSWDWRDCDDIVRHANNRNVWINLRDRFPHPYKK
                     KDAQTWLDIVVGARPENNFAIAVNDKAVGGIGFSVQTDVGHRSAEIGYWLGEEYWGRG
                     IVTQALVAVSEYAFSHHDICRLYAHVFEWNPASVRVLEKASYVFEGRLKKSVTKDGKT
                     IDQLIYARTID"
     gene            complement(678..>2012)
                     /gene="larA"
                     /locus_tag="VIJ87_01240"
     CDS             complement(678..>2012)
                     /gene="larA"
                     /locus_tag="VIJ87_01240"
                     /inference="COORDINATES: protein motif:HMM:NF033504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050043 - lactate racemase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent lactate racemase"
                     /protein_id="HEY5443100.1"
                     /translation="RTSRRFTLSKGHWSSLGCDSLSMSEVKLGYGQKSLHFDFDPDRF
                     SVLGVDAAAETPLTDVEIGLAFDSPISAPSLDDLISSNDSVLLVVSDATRATASAQIV
                     NLLVRRLIQAGVSPANLSIIFATGIHRPVSEQEKADLLTPFILQRVRTLTHDAYDPTN
                     LTSLGSTERGVPVEVNRALIQFSKVILIGGIGFHYFAGFTGGRKSICPGLASAKTIEA
                     SHMLALDFEKGGRKSGVGTGLLDGNAVHEECERVARLVGPSFGVNTIVDEQGRAVGVY
                     CGDWQLAHREGCAVYLRNHSVKIHAKRDLVVASCGGFPHDINLIQAHKALDMASHACR
                     DGGSIILLAECRDGLGRADFMKWFESADSNALEKRLQDEYEVNGQTAWSLLTKAERYR
                     VYLVSNLPAEDVKRMRMIPAERLEAAIEREAGTGNGFIMPRGAGTLPRLTSV"
BASE COUNT          502 a          569 c          464 g          477 t
ORIGIN      
        1 atcgaaacag tgcgattaat gctagaactc ggtcaagcga tggtcaagtt cctactcgtt
       61 gggccactga cttgatttga aattgtctcg gcgtatgctc gacgttctct gcgtctctgt
      121 ggcgatcgct gaggctgtgc cgtcaatcga tcgtcctcgc gtaaatcaac tgatcgattg
      181 tctttccgtc tttcgtgaca ctcttcttca aacgaccctc aaacacataa ctagcttttt
      241 cgagaacgcg aaccgacgcc ggattccact caaagacgtg agcatacaat ctgcaaatat
      301 catgatgcga aaacgcatac tccgaaactg cgactaaggc ttgggtgaca atcccacgcc
      361 cccaatactc ttcaccgagc caatatccga tctcggcgga ccggtgcccg acatctgtct
      421 gaacggagaa tccgatcccg cccacagctt tgtcatttac cgcaatagca aagttgtttt
      481 cgggtcttgc gccaacaaca atgtcgagcc atgtttgcgc atctttcttt ttgtaagggt
      541 gcgggaacct gtcccgaagg ttgatccaaa cgttgcggtt gtttgcatga cgaacgatgt
      601 cgtcgcagtc acgccagtcc caacttcgta ccacgcacga ttgtagaact atctgcatcg
      661 attgaaatcg cgccaattta gactgaagtt aatctcggta gcgtccctgc tccgcgaggc
      721 atgataaagc cgtttccagt acctgcttct ctctcgatag cagcttcaag tctctccgcc
      781 ggaatcatcc tcatgcgttt cacatcctca gccgggagat tcgaaactaa gtaaactcga
      841 taccgttccg ccttagtcaa taatgaccac gcggtttgac cgttaacttc atactcatcc
      901 tgtaagcgct tctccagagc attagaatcc gcgctctcaa accacttcat gaaatcggcg
      961 cgtcccaaac catctcgaca ttcggccaac aaaatgatcg atccaccgtc tctgcatgcg
     1021 tgagacgcca tgtccagcgc tttgtgcgct tgaatcagat tgatgtcgtg aggaaacccg
     1081 ccgcaactcg caacgacgag atctctcttt gcgtgaatct taacggaatg gttcctcagg
     1141 taaaccgcac aaccctcacg atgagcaagt tgccaatcgc cacaataaac cccgacggca
     1201 cgcccctgct cgtcaacaat cgtgttcacc ccgaacgacg ggccaaccaa cctggcgact
     1261 cgttcacatt cttcgtgcac tgcgttgcca tcaagtaacc ccgtgccgac accggatttg
     1321 cgtccgcctt tttcaaaatc aagcgcgagc atatggctgg cttcgattgt tttcgcagag
     1381 gccaatcctg gacaaataga ctttcgacca ccggtgaacc ccgcaaagta atgaaatcca
     1441 atgccgccga taaggattac tttcgagaac tggatcagag ccctgtttac ttcgacagga
     1501 actccgcgtt ccgttgagcc aagcgacgtc aaattcgtgg gatcataagc gtcgtgagta
     1561 agcgttcgga ctcgctgaag aatgaaaggc gttaacaaat ccgctttctc ttgttcgctg
     1621 acaggccggt gaattccagt ggcaaatatg atcgacaggt ttgcgggtga gactcctgcc
     1681 tgaatcaggc gtcgaaccaa taggtttacg atctgcgcac tggctgtggc tcgcgtcgcg
     1741 tccgaaacca ccaggaggac cgaatcgttt gaactaatca aatcgtcgag cgagggagcg
     1801 ctaattggcg aatcgaaggc tagcccgatt tcgacatcag tcagtggcgt ctcggcagca
     1861 gcatcaacac cgagtacgga gaatctgtcg ggatcgaaat cgaagtgaag tgatttctgt
     1921 ccgtaaccaa gtttaacttc actcatagac aaagagtcac aacccaaact ggaccagtgc
     1981 cctttcgata acgtgaaacg acgcgaagtc cg
//
LOCUS       DATCGC010000126         2248 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_467554, whole genome shotgun sequence.
ACCESSION   DATCGC010000126 DATCGC010000000
VERSION     DATCGC010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2248)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2248)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2248
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_467554"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1406)
                     /gene="pnp"
                     /locus_tag="VIJ87_01245"
     CDS             complement(<1..1406)
                     /gene="pnp"
                     /locus_tag="VIJ87_01245"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: protein motif:HMM:NF008805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004654 - polyribonucleotide
                     nucleotidyltransferase activity [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HEY5443101.1"
                     /translation="MSEKKYLKESIKLGDKELTVETGRVAKQADGSVVIRYGDTMLLV
                     AAVGAPSVREGIDFFPLTVEYRESNYAAGRIPGNYFRREGRPNEKEVLTSRLIDRPCR
                     PLFAEGYKNETQVIASVISADPDNNPDVIAITGASCALYLSDIPFLNPIAGVRIGLIE
                     GRYIVNPTYDEVRESRLNLIVAGTEEAIVMVEAGASEISEEIMVEALMLAHKEINRLC
                     RWQKELYKALEIQKREVVSSSLDEEMLREITEKYTDRLRAALDTTNQEKRASYAAVDA
                     LKKEVVESYPDDLPEKRVMAKHIFDHLKENVFRDDILNQRRRPDGRRFSEIRAISCEV
                     GWLPRVHGSALFTRGETQALVSTTLGTKEDEQFIDDLEKGEVKRKFLLHYNFPQYSVG
                     EVGRFGSSSRREIGHGALARRALETVLPDDADFPYTVRIVSDITESNGSSSMATVCGG
                     TLSMMDAGVPLKAPVAGVA"
     gene            complement(1737..2006)
                     /gene="rpsO"
                     /locus_tag="VIJ87_01250"
     CDS             complement(1737..2006)
                     /gene="rpsO"
                     /locus_tag="VIJ87_01250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011275926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HEY5443102.1"
                     /translation="MALAKETKEQIVSDFRTHEADTGSPQVQVALLSNRINGLTEHFK
                     THKKDNHSRRGLLKMVQQRRSLLDYLKRTDIERYHEVVNRLGLRR"
BASE COUNT          499 a          615 c          581 g          553 t
ORIGIN      
        1 gcgacacccg ctaccggcgc ctttaacgga acacccgcat ccatcatcga taaggttcca
       61 ccacaaacgg tggccattga agacgaacca ttcgactctg tgatgtccga aacgattcgg
      121 accgtgtaag gaaagtcagc atcatcaggt aacaccgtct caagtgctct gcgagccagc
      181 gcgccgtggc cgatttcacg ccggctggac gaaccgaagc gccctacctc acccaccgag
      241 tactggggga agttgtagtg gaggagaaac ttacgcttca cttcgccttt ctcaaggtca
      301 tcaatgaact gttcgtcttc tttggtgccc aaggtcgtgg atacgagtgc ctgggtttca
      361 ccacgcgtaa acaaggccga accgtggacg cgtggtagcc aacccacttc acagctaatc
      421 gcacggattt cggagaacct tctgccatcc ggacgacgtc gttgattcag aatgtcgtcg
      481 cgaaatacgt tctctttgag gtggtcgaag atgtgcttcg ccattactcg tttttctggc
      541 agatcatcgg gatacgactc gacaacttct ttctttaacg cgtcgactgc cgcgtagctg
      601 gctcgctttt cctggttcgt agtgtcgaga gcagcgcgca gacgatcagt gtatttctca
      661 gtgatctcgc gcaacatttc ctcgtcgaga cttgacgaca cgacttctct cttctggatc
      721 tcgagtgcct tgtaaagttc cttctgccaa cggcagaggc ggttaatctc tttgtgagcc
      781 agcatcagcg cttcaaccat gatctcctcg gagatctcgc tcgcgcctgc ttcgaccatc
      841 acgattgctt cttcagtacc cgccacgatc aggttcaagc gcgactcacg aacttcgtcg
      901 taagttgggt tgacgatgta acggccctca atcaacccga ttctcacacc ggcgatagga
      961 ttgaggaacg gaatatccga caaatacagc gcacacgacg caccggtaat ggcaattaca
     1021 tcggggttgt tgtctggatc tgctgaaatt acgctggcga taacctgggt ttcgttctta
     1081 tagccttcgg caaagagtgg acggcaggga cgatcgatga ggcggctggt caggacttcc
     1141 ttttcattcg ggcgaccctc gcgcctaaag tagttaccgg gaatacgtcc cgcggcgtag
     1201 tttgattcac ggtattcgac cgtgagcggg aaaaaatcaa tcccttcgcg aacggaaggt
     1261 gcgccaacag cggcaacgag gagcattgtg tctccatacc gaattaccac tgagccgtcg
     1321 gcttgttttg caacacgacc ggtttcgacg gtcaactcct tgtcaccaag tttgattgat
     1381 tctttaagat atttcttttc tgacatgttc ttcgtctcct taggacgtag gcacctgaaa
     1441 caaaatcagg tcgcgggcgt ctcatccgcc acgcagttgg gctaatcttt gagattgttt
     1501 gcaccacgcc aacgtgaggc gggtagtctg agctggggca aaagaagagg cggcacgagc
     1561 ccataaccgt gactcatgcc gcctatttgc tcgaagctag ggccttgcgc gtctgcttgt
     1621 ttccagtcaa tcgccgtcac gttcggcact gccacaagct cttcgatgga cgcgggcttt
     1681 actaatctag agattcgaag atctctcgct ttggtcaaaa actgagttga cccctgctaa
     1741 cgtcgcaggc ccagacgatt cactacctcg tggtagcgct caatatccgt gcgtttcaag
     1801 taatccagca aacttctgcg ctgttggacc attttcagca gtccacgccg cgaatgattg
     1861 tccttcttat gggttttgaa atgctctgtc agcccgttaa ttctgttgct caacaaggcg
     1921 acttgtactt gtggggagcc tgtatccgcc tcgtgagtac ggaagtcaga cactatctgt
     1981 tctttggttt cttttgctaa tgccacttgc ttaaatggtc ctcctcgacc gcagtaaaac
     2041 cgttaaagac ggcaaccgct aaacttaaaa agcttcagca atttaacatg caggtaaggc
     2101 actgtccagt tggcagcgga gaaccaggag gaggagcagg ggcaggggca gggcaggagc
     2161 agcaaacacg catctgccgg tgattggtga ctttggagcg gctctgccgc attcccgtgc
     2221 ggaaagcctc cggctttccg accgtcga
//
LOCUS       DATCGC010000127         1056 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_234880, whole genome shotgun sequence.
ACCESSION   DATCGC010000127 DATCGC010000000
VERSION     DATCGC010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1056
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_234880"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..741
                     /gene="lpxA"
                     /locus_tag="VIJ87_01255"
     CDS             <1..741
                     /gene="lpxA"
                     /locus_tag="VIJ87_01255"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: protein motif:HMM:NF003657.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008780 -
                     acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine
                     O-acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HEY5443103.1"
                     /translation="IGPFAVIEQDVEIGDDCEVGAHAIIKSFTRLGARNRVFEHAVIG
                     GEPQDVKFKGETSFLHIGDDNLIREFCTLHRASGEGEFTKIGSRNFFMVGIHVAHNCE
                     VGDDNIFANGVALAGHIVVEDHVFLSNNVGAHQFVRFGRYAMVGGKSKIVQDVLPFFT
                     TDGNPPCVRGLNSIGLRRANFSTESRQALKEAYKLLFRSTLPLPEALTSMDLLSDENV
                     SHLTAFIRGSRRGFTRARKQHHVNSDLE"
     gene            748..>1056
                     /locus_tag="VIJ87_01260"
     CDS             748..>1056
                     /locus_tag="VIJ87_01260"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEY5443104.1"
                     /translation="MMRAMRQKVVAFCALLVIVPGATICLASTQGTANTQARDPGVSD
                     TSIVIGTVVPMKGSLASMGGVVKAVITSYFDDLNSKGGINGRRVEIKFVETGDTPAGT
                     K"
BASE COUNT          258 a          249 c          288 g          261 t
ORIGIN      
        1 attgggcctt ttgccgtaat cgagcaggat gtcgagattg gtgacgattg tgaggttggt
       61 gcccacgcaa ttatcaaaag cttcactcgc ctgggtgccc gtaatcgagt ctttgaacac
      121 gccgtgatcg gcggtgagcc ccaggacgtc aaattcaaag gtgagacgag ctttcttcac
      181 atcggcgacg acaacttgat tcgagagttc tgcaccttgc accgcgcgag cggcgaaggc
      241 gagtttacga agatcggctc acgtaatttc ttcatggtgg gaatccacgt cgctcacaac
      301 tgtgaagtcg gcgacgacaa catctttgcc aacggtgtag cgctggccgg acacatagtt
      361 gttgaagatc acgtcttcct ctcaaacaat gttggggcac atcagttcgt tcgatttggc
      421 cgttacgcca tggttggcgg caaatcgaag atcgttcaag atgtgttgcc tttctttact
      481 actgatggaa atccgccgtg cgtgcgaggg ctaaactcta taggtctgag acgcgccaac
      541 ttttcgaccg agagtcgaca ggcattaaaa gaggcttaca aattactatt caggtcgaca
      601 cttcctttgc cagaagccct gacttccatg gacttacttt cggatgaaaa cgtttcccac
      661 ttaactgcct ttatacgtgg ttcaagaaga ggctttacgc gcgcacgcaa gcaacatcat
      721 gtcaattcag acctggagta aagctgaatg atgagggcca tgcgacagaa ggtggttgcg
      781 ttttgtgcgt tgcttgtaat cgttcctggc gcgacgattt gcttagcctc gactcaggga
      841 acggcaaaca cgcaagcgcg tgatcctggg gtcagcgata cttcgattgt gatcggtacc
      901 gtcgtaccaa tgaaaggatc gttagccagc atgggcgggg tggtaaaggc tgttatcact
      961 tcctacttcg atgatctaaa cagcaaaggt gggatcaacg gtcgacgagt tgaaataaag
     1021 tttgttgaga caggtgacac acctgcggga acgaaa
//
LOCUS       DATCGC010000128         1305 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_134627, whole genome shotgun sequence.
ACCESSION   DATCGC010000128 DATCGC010000000
VERSION     DATCGC010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1305)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1305)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1305
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_134627"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..396
                     /locus_tag="VIJ87_01265"
     CDS             <1..396
                     /locus_tag="VIJ87_01265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443105.1"
                     /translation="RAQACGFSVNTFYVVEDTGKQISDVKIEPVSSVSYTRYFREHFN
                     QVTKIFRDKNLEAYVVLHGLCGAHRGVVLKFSAPGFETTEQEVEMPLGFRGYVLNIKK
                     KGSKEQASISAISCEEEQSRCVKKLARDY"
     gene            398..814
                     /gene="ndk"
                     /locus_tag="VIJ87_01270"
     CDS             398..814
                     /gene="ndk"
                     /locus_tag="VIJ87_01270"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002640621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HEY5443106.1"
                     /translation="MSNLTFGIVKPDAVRAGNTGSIIQRIIDNGFKIRGLKLIHMTQT
                     EAEGFYAVHRERPFFGGLTEFMSSAPCVVMALEKEGAVKAWRDLMGATDPAKADEGTL
                     RKEFGGSLGENAVHGSDSDENAAIEIAYFFSQLELV"
     gene            998..>1305
                     /locus_tag="VIJ87_01275"
     CDS             998..>1305
                     /locus_tag="VIJ87_01275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4190 domain-containing protein"
                     /protein_id="HEY5443107.1"
                     /translation="MSEQPTWHAQDPNAPGNWRSPDPNAPGAWVPPEQRQPVKPAWQP
                     PPPPVTFPRNQPSQGLAVASMVLGILGLFVGMFCLGPVPGIAALVLGLVALSQIKSAP
                     "
BASE COUNT          328 a          307 c          356 g          314 t
ORIGIN      
        1 agggcacagg cgtgtggctt ttcggtgaat acattctatg tggtcgagga taccggcaaa
       61 cagatcagcg atgtgaagat tgaaccggta agttccgttt cttatacgcg gtactttcga
      121 gaacacttta atcaagtgac gaagatcttc agagataaga atcttgaagc gtatgttgtt
      181 ctccatggtt tatgcggagc acacaggggt gttgtattaa agttctcagc gccaggcttt
      241 gagaccactg aacaggaagt ggaaatgcct cttggctttc gaggatatgt tctaaatatt
      301 aaaaagaagg gtagtaaaga acaggccagc atttcagcga tttcatgtga agaggaacaa
      361 agtcgctgtg taaagaagct ggctcgtgac tattgaaatg agcaacttaa ctttcggaat
      421 tgtaaaaccc gacgcggtac gcgcgggcaa cactggatcg atcattcaga gaattatcga
      481 caacggtttt aagatccgcg gactaaaatt aattcacatg acgcaaactg aagctgaagg
      541 cttctacgct gttcatcgtg agcgtccatt ctttggtgga ctcaccgagt ttatgtcgag
      601 cgctccatgt gtggtgatgg ctctcgaaaa agaaggcgcc gttaaagcat ggcgagatct
      661 catgggagcg actgacccag cgaaagctga cgaaggtact ttgcgtaaag aattcggtgg
      721 ctccttaggc gagaatgcgg ttcatggttc cgactcggac gagaacgccg cgatcgaaat
      781 cgcttacttc ttcagtcaac tggaattggt ctaacgaatc ttcggcgagg cccctgtcac
      841 acgacagccg atgaaatatt gtccccaatg tcaaaagcag tacaccgaga ggtggatcac
      901 attctgctcg gacgacggcg cgatcttgat tgatacggga ttttcgccga gttcaacgcc
      961 tccgcctgga ggtcaaaggc caccatacgc gccgcctatg tcggaacagc cgacctggca
     1021 cgctcaggat ccaaatgcgc caggtaattg gcgttctcca gatccaaatg cacctggtgc
     1081 gtgggttccg ccagaacagc gccaaccggt aaaaccggca tggcagccgc cacctccacc
     1141 agtaacgttt ccccggaacc agccaagtca ggggcttgct gttgcttcaa tggttcttgg
     1201 gattctcggt ttgtttgtgg gaatgttttg cctgggacca gtcccgggta tcgccgcact
     1261 ggtgcttggt cttgttgcgc tgtctcagat taagagcgcg ccgga
//
LOCUS       DATCGC010000129         1048 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_467611, whole genome shotgun sequence.
ACCESSION   DATCGC010000129 DATCGC010000000
VERSION     DATCGC010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1048)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1048)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1048
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_467611"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..289)
                     /locus_tag="VIJ87_01280"
     CDS             complement(<1..289)
                     /locus_tag="VIJ87_01280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443108.1"
                     /translation="MKKATKTKWVKALRSGDYRQGKSVLKRSTKSLGEQYCCLGVLCE
                     VAGLTAHKVNTEWYYAESRVQLPYELRTELGINSSEQNHLIGMNDEGNNFNT"
     gene            complement(273..434)
                     /locus_tag="VIJ87_01285"
     CDS             complement(273..434)
                     /locus_tag="VIJ87_01285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443109.1"
                     /translation="MPLYVVMSFGGMLLLVIVVVGILALITFGEHARYDLKVPQNTLY
                     ERQHSEESN"
     gene            complement(434..826)
                     /locus_tag="VIJ87_01290"
     CDS             complement(434..826)
                     /locus_tag="VIJ87_01290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443110.1"
                     /translation="MEDTLKDAWADALTSGLYKQSRAAMNRGGGFCCLGVLCEVAMEL
                     GYPVVKTEVEDMDDVFEYRLAGEPYGDMDALTTGLMETFDISTDQQNKFIGLNDGEVV
                     VNPETNFYESVAPVDFAGIAERLDEVLD"
BASE COUNT          234 a          299 c          253 g          262 t
ORIGIN      
        1 tggtgttaaa gttgttgccc tcgtcgttca taccgataag gtggttctgc tccgacgagt
       61 taatgccgag ttcggtacgc agttcgtagg gcaattggac ccggctttcg gcgtaatacc
      121 actcagtatt taccttgtgg gccgtcaggc ccgctacctc acagagcaca ccgaggcaac
      181 aatactgctc gcccaggctt ttggtactac gctttagcac gctcttgccc tgacgatagt
      241 cacccgagcg cagagccttg acccacttgg tcttagttgc tttcttcact gtgctgcctt
      301 tcgtacaggg tgttttgggg aacttttagg tcgtaccggg cgtgctcacc aaaagtgatg
      361 agcgccagga tgccgaccac cacgataacc agcagcagca tcccgccaaa ggacataacc
      421 acataaagtg gcatcagtcc agtacctcgt ccaatcgctc ggcaatgcca gcaaagtcca
      481 cgggagcgac gctctcatag aagttggtct ccgggttaac cacaacctca ccgtcattaa
      541 gaccaatgaa cttgttttgc tggtcggtgg aaatgtcgaa ggtttccatc aaacccgtgg
      601 tcaaggcgtc catgtcgccg taaggctcac cggcaagccg gtactcgaaa acatcatcca
      661 tgtcttcgac ctcagtcttt acgacagggt aacccagttc catggctacc tcgcacagta
      721 cgcctaggca acaaaagccg ccgccacggt tcatggcagc acggctctgc ttatacaggc
      781 cgctggtcag ggcgtcggcc catgcatcct taagtgtgtc ttccattaca atcctaactt
      841 gtcgagcagg ccttgttggt ctgcgatggt ccacattaca cgaagttgct ctacgttgtc
      901 aagacctatc tcggcgcaaa tttgctccaa tgtcatggac gtattgagga acaggtggtg
      961 gcttctcttt aactgttcaa tgctgttgtc atcaaacctc actgtattcc tccaatcgag
     1021 ccagtaggtc tacggtttct actctaaa
//
LOCUS       DATCGC010000130         1085 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_201429, whole genome shotgun sequence.
ACCESSION   DATCGC010000130 DATCGC010000000
VERSION     DATCGC010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1085)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1085)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1085
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201429"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..530)
                     /locus_tag="VIJ87_01295"
     CDS             complement(<1..530)
                     /locus_tag="VIJ87_01295"
                     /inference="COORDINATES: protein motif:HMM:NF014808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M17 family peptidase N-terminal
                     domain-containing protein"
                     /protein_id="HEY5443111.1"
                     /translation="MQVEASRGPIEELDVQALAVAVFKNEKPDDGFLKKLDELSGGLV
                     RSALDAEEFSGKEGETAYFHLVGNNSLKARRLLLVGVGDASDYKNAQVSQMAGTAVRS
                     LRSKKAKTIAVAPRASGDVFETTATAVQGAYISLFDPDKYRTVDKEEKTIDRLVVAVE
                     GAEEDALQRGVNVGRIV"
     gene            complement(576..1037)
                     /gene="smpB"
                     /locus_tag="VIJ87_01300"
     CDS             complement(576..1037)
                     /gene="smpB"
                     /locus_tag="VIJ87_01300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003564285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HEY5443112.1"
                     /translation="MAREEKVLAANRAAFHNYHISDKYEAGLVLTGTEVKSAMEGRVQ
                     LKEAYISVREGEAWLFNAHISPYSHGNRENHDPLRTRKLLLHKREISRLDEATAKQGM
                     TLVPTQLYLKNGRIKVEVGIARGKKLYDKREAELKRTVERETRAQLKERNR"
BASE COUNT          227 a          316 c          249 g          293 t
ORIGIN      
        1 actatccgcc ccacattcac accacgctgc aacgcatctt cttccgcacc ctcgaccgcc
       61 accactaaac gatcgatcgt cttttcctct ttatcgacag ttcgatactt atccggatcg
      121 aagagggaaa tgtaagcgcc ctggacagcc gtcgccgttg tttcgaacac atcaccggaa
      181 gcccgcggcg ctacagcaat cgtcttcgcc ttcttgctgc gcaaagaacg aacggcggtt
      241 cccgccatct gcgagacctg tgcattcttg tagtcgcttg catcacctac acccacgaga
      301 agcaggcgac gtgctttcaa actgttattt ccgacgagat gaaaataagc ggtctcgcct
      361 tctttaccgc tgaactcttc ggcatcgagc gccgaccgca cgagtccacc ggaaagttcg
      421 tcgagcttct tcaggaaacc gtcatcgggt ttctcgtttt tgaaaacggc gactgctaag
      481 gcttgcacat caagctcttc aattgggccc cggctggctt caacttgcat gtgagtaggt
      541 tctcctgggt gttggaaatt agaactaaga attaatcaac gattgcgttc cttcaactgg
      601 gcacgcgttt ctctttccac tgttcgcttt aattcggcct ctctcttgtc gtacaacttc
      661 ttaccgcgcg caattcccac ctcgactttt atgcgaccgt tttttaggta gagctgcgtg
      721 ggaacgagag tcattccctg tttggctgtg gcttcgtcca gtcgggatat ttcacgtttg
      781 tgaagcagca gcttgcgagt cctcagtgga tcgtggttct cgcggttgcc atgagaatac
      841 ggcgaaatgt gtgcattgaa caaccacgcc tcgccttcgc gcactgaaat atacgcttct
      901 ttcagttgca cgcgaccttc catggcactc ttgacctcag tgcccgtcaa tacgagtccg
      961 gcttcgtatt tatccgaaat atgataattg tgaaaggccg cacgattagc cgccaacact
     1021 ttttcttctc ttgccatgca ggctaagggc tactgcccta cgttcttcaa gtcgagtacg
     1081 tcgtg
//
LOCUS       DATCGC010000131         1926 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_68212, whole genome shotgun sequence.
ACCESSION   DATCGC010000131 DATCGC010000000
VERSION     DATCGC010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1926)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1926)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1926
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68212"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..847)
                     /locus_tag="VIJ87_01305"
     CDS             complement(<1..847)
                     /locus_tag="VIJ87_01305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443113.1"
                     /translation="MRFISLKWTGALLIVLATAFSGFAQKNAASDVIMVLPFENTSNR
                     AEYNWVGESFADALAELLNKPGLIVVTSDERELAYQHLHLPETVIPSRATAIKLARQA
                     KASLIVIGSYSVVTPPATDAKNANKDKTSLEAFVQVTARVIKVNEGRTLGEVINGGWA
                     TRQFDYGAPLTTLQDIHGRLAYQILYQRDKALPYSQNQIVQEATKIPQRAFEAYVKAV
                     QLPLNEVLRENYLKNAIRFYADASSDAVYTQAAFELGRTYMARGNWKDATEYFSKLQK
                     KDPHYA"
     gene            complement(1120..>1926)
                     /locus_tag="VIJ87_01310"
     CDS             complement(1120..>1926)
                     /locus_tag="VIJ87_01310"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEY5443114.1"
                     /translation="VENNEFTIHYQPIVALKTGRLAGFEALVRWNHPRLGIVSPADFV
                     PVAEETGLIVPIGQWVLEEACKKVREWQINSPGHRALSLSVNLSARQVAQPDLLERIK
                     GALTESTLQPHHLKLEITESVVMGNAEAAAQMFKQLRSLGVQLSIDDFGTGYSSLSYL
                     HRFPLNYLKIDRSFVMRMTTDNDNAIVKTIATLAQNLGMEVIAEGIETEEQYQRLKEL
                     GCEYGQGFLFSRPVDADSASRLLVKDSQRDLALDIKTIDSDAVVAALYPM"
BASE COUNT          454 a          483 c          492 g          497 t
ORIGIN      
        1 cagcgtagtg cggatccttt ttctgtaact tcgagaagta ttcagttgcg tccttccagt
       61 tgcctcgagc catgtatgtt cgtcccaact caaacgcggc ctgggtatac acggcgtcac
      121 tggatgcgtc tgcgtaaaag cgaattgcat tctttagata gttttcgcgg agcacttcgt
      181 taagaggaag ctgaaccgct ttgacataag cttcaaatgc tctctgcgga atcttcgtgg
      241 cttcctggac gatttgattt tgtgaatacg gcaaggcttt gtcgcgctga taaagaatct
      301 gataggcgag ccggccgtga atatcctgga gtgttgtaag cggagcgccg tagtcaaact
      361 gtcgggtcgc ccaaccaccg ttaattactt caccgagagt gcgaccttcg ttaactttga
      421 tgactcgagc tgttacctga acgaacgcct cgagtgatgt tttgtctttg ttagcgttct
      481 tcgcgtctgt ggccggaggt gtaacgactg aataactgcc aatcacaatc aacgaggctt
      541 tggcctggcg cgctaacttg atggcggtgg cacgcgacgg aataacagtc tcaggaaggt
      601 gcaaatgttg atatgccagt tcgcgttcgt cgcttgtgac aacgatcaag ccgggcttat
      661 ttaacaattc ggccagggcg tcggcaaagc tctccccgac ccagttgtat tcagctcggt
      721 tcgaagtatt ctcaaacggc aataccatga tgacgtcgct ggcagcgttc ttttgcgcga
      781 agccggaaaa agccgtcgcc agaacaatga gcagagcacc cgtccactta agactaataa
      841 atctcatcaa aacgaaaaac tcctaacaaa aattaacatc cggatccgcg gctatgatgc
      901 gttgcgacgg attcgtggtt gcgccagtgg agcggatcca cggcttcgtc aaaacaccct
      961 tggaggggtt aactttaaca gattaagctg ggatttctta aacccagagg aattaagccg
     1021 cagctacacg cagataaacg ccgatcagaa aggcagaatc cttttgaagg gacttctttc
     1081 taatcggcgt ttttcttcgt gtagctgcgg ctaaaaaact cacatcggat acaacgcagc
     1141 gacaactgcg tcgctgtcga ttgttttaat gtctaaggcg aggtctcgtt gcgagtcttt
     1201 aactagcaat cgggaggcgc tgtcggcgtc gaccgggcga gaaaatagga acccctggcc
     1261 atactcacag cctaattcct tgagtcgttg atactgctcc tccgtttcaa tgccttccgc
     1321 gattacttcc atgccgaggt tctgagccag tgtggcaatt gtcttaacaa tcgcattgtc
     1381 gttgtcggtg gtcatcctca tgacgaatga gcggtcgatt ttcaagtagt tcaaggggaa
     1441 gcgatgcaga tagctcaacg aggagtagcc agtcccgaag tcgtcgatgc ttaactgaac
     1501 acctagtgac cgcagttgtt tgaacatctg ggctgcggcc tcggcatttc ccatcacaac
     1561 actttcggtg atttccaatt tcaaatggtg gggttgaagt gtgctctcgg ttagtgcgcc
     1621 cttaattctc tccagcagat caggttgagc aacctggcgg gccgagaggt tgacactcag
     1681 actcagcgct cggtgtccag gtgaattgat ctgccactca cgcaccttct tgcacgcttc
     1741 ttccaaaacc cattggccga taggaactat tagccctgtc tcttcagcta ccggaacaaa
     1801 gtcagccggc gatacgattc ctagtcgtgg atgattccag cgaacgagtg cttcaaaccc
     1861 tgccaatcgt ccagttttca gggcgacgat cggttggtaa tgaattgtga actcgttgtt
     1921 ttccac
//
LOCUS       DATCGC010000132         2344 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_134734, whole genome shotgun sequence.
ACCESSION   DATCGC010000132 DATCGC010000000
VERSION     DATCGC010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2344)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2344)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2344
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_134734"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..829)
                     /locus_tag="VIJ87_01315"
     CDS             complement(<1..829)
                     /locus_tag="VIJ87_01315"
                     /inference="COORDINATES: protein motif:HMM:NF018190.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate binding family 9 domain-containing
                     protein"
                     /protein_id="HEY5443115.1"
                     /translation="MKAAWLITVLIGLCVCSANSQTPSGSASPTVSESPEKLAEKAKG
                     TPVASAANAVKVGKAAASSLPPEKSNPVKLALFAKPPVIDGKLDDEVWASAPVLKDFY
                     QIQPGDNVIPENRTEVMLGYDTRFIYIAFHCYDDPSKVRANVLKRDNIFDDDYVGILF
                     DTFNDQRRAYEFDFNPLGIQADGIWTEGLNEDFSLDLVMESKGMVTNDGYIIEVAIPF
                     KSLRYVAGKDKVWGVHFWRRTKRLNNSLDMWIPMDRDKGSWLAQAGHITGLDGISTER
                     "
     gene            complement(1029..>2344)
                     /locus_tag="VIJ87_01320"
     CDS             complement(1029..>2344)
                     /locus_tag="VIJ87_01320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443116.1"
                     /translation="LVIPSDSNASVRAGTVHGGITNDFGLLVKHGEYVGHSLDGQIGN
                     GGARIKLGNVNGGIMLNHAQDGRQLSPATSLALDQEKDKEKDKDKNKGKDKDDYKVMG
                     EEISRQVEQATATVAAIDASQAAKVNSAKMTRDLQREAQRQVDSAIRDAQREMERAQL
                     EIQRETARQVREIRVTRVRGTGSGSGSGAGSGSGNGAGWNGRGVSAQETKTFTVNGAP
                     RVNVSTFDGSVVVNGWDKSEVMYTATKRGDDDEGLRQVNIQTEQDGAGVSIIATSNDQ
                     RSGSAQLEVWVPRKATLHVSSDDGSLKLNGVSGDITLRTGDGSIEVNDGGGALQLNTG
                     DGHIHVIKFDGQLDARTGDGSIQLDGSFNALSARTGDGGISLTVPSSSNFTVETNADN
                     EVTNEGLTLSEDIAPSRRVKRWRVGNGGKVFVLHTGDGNIVLRSR"
BASE COUNT          519 a          669 c          567 g          589 t
ORIGIN      
        1 ttcgctcagt cgagattccg tccaatccgg taatgtgtcc ggcctgagct aaccaactcc
       61 ccttgtctcg atccatcggg atccacatgt cgagcgagtt attcaagcgt tttgtgcgac
      121 gccaaaaatg cacgccccaa actttgtctt taccggcaac atagcgaagt gacttgaacg
      181 gaatcgcaac ctcgatgatg taaccgtcgt tagtcaccat tcccttcgat tccatcacga
      241 gatccaaact gaaatcttcg ttcaaacctt cagtccaaat accgtcggcc tgaattccga
      301 gcgggttaaa atcaaactca tacgctcgtc gctggtcgtt aaaggtatcg aagaggatac
      361 cgacgtaatc gtcgtcgaaa atgttgtcgc gcttgagaac gtttgcacgg accttggaag
      421 gatcgtcata acagtgaaag gcgatataga taaagcgcgt gtcgtaaccg agcatcactt
      481 ccgtgcggtt ttctggaatc acattgtcgc cgggttgaat ctgatagaaa tctttcaata
      541 ccggagcact ggcccacact tcgtcgtcga gttttccatc gatgaccggg ggcttggcga
      601 aaagggccaa cttcaccggg tttgattttt ctggaggtag agaactagcc gcagccttgc
      661 ccacttttac agcgttggcc gccgaagcca ctggagtgcc cttggctttt tcagcaagtt
      721 tttctggtga ttcactaacg gtgggagaag cgctaccgga cggtgtctga gaattggcgc
      781 tgcaaacaca caatcctatc aacacagtga tgagccaagc cgctttcata aaaacgttcc
      841 tcgtgccgca gtttgaaacg attgctactt gcagtttcga agctgctcga aagcttcccg
      901 ctcattggac gtcggccgtc caaagaatct tccagagcgc gcgtgattgc gagtgacaca
      961 gacctcagtc tgtattccta atcgtaggtg aactaaatgc gaatgacaca gagtgaagtg
     1021 ctgcttactt accgcgaacg gagcacaata tttccgtcgc ctgtgtgaag aacaaacacc
     1081 ttgccgccgt taccaacgcg ccagcgtttg acacgtcgcg atggagcgat gtcttcgctg
     1141 agagttaatc cctcattagt cacttcgtta tcagcgttag tctctactgt aaagttcgaa
     1201 ctagaaggta ccgttagaga aatgccacca tcaccggtcc tggctgacag agcgttaaag
     1261 ctgccatcaa gttgaatcga gccatcgccc gttctggcat caagctgtcc atcaaactta
     1321 ataacgtgga tgtggccgtc gccggtattc aactgaagtg cgccgccgcc atcgttgacc
     1381 tcgatcgaac catctccagt tcgcaacgtg atgtcacccg agactccgtt gagcttgagg
     1441 ctgccatcat ctgaggagac gtgcagcgtt gcctttcggg gcacccaaac ttccagttgc
     1501 gcgctgccgc tacgctggtc attgctcgtc gcgatgatgg agacgccggc accgtcttgt
     1561 tcggtctgaa tattgacctg ccgcaaaccc tcgtcgtcat cgccacgctt tgtcgctgtg
     1621 tacatcactt ccgatttatc ccagccattg accacaaccg atccgtcaaa agtagagacg
     1681 ttaactcgcg gcgctccgtt aaccgtaaaa gtttttgttt cctgggcaga aacaccccta
     1741 ccattccaac cagccccatt tccggaccca gaacccgcac ccgagcctga acctgagccg
     1801 gttcctcgca cgcgtgttac gcggatctca cgaacctgtc gtgccgtttc gcgttgaatt
     1861 tcaagctgtg ctcgttccat ttcacgttgt gcatcacgta tcgcagaatc cacctggcgc
     1921 tgggcttcac gctggaggtc acgagtcatc ttcgccgaat tcaccttggc tgcttgtgac
     1981 gcgtctatcg cggccacagt ggcagtagcc tgttcgactt gccgcgagat ctcctcaccc
     2041 atcaccttgt agtcgtcctt gtccttgccc ttattcttgt ccttgtcttt ctccttgtcc
     2101 ttctcttgat caagcgcgag cgaagttgca ggactgagct ggcggccatc ctgtgcgtgg
     2161 ttaagcatga tgccgccgtt tacatttccc aacttgatgc gagcaccgcc atttcctatt
     2221 tgcccgtcta gactgtgacc aacatattca ccgtgcttga cgagcagacc gaaatcattg
     2281 gtgatgccgc catgaaccgt tcccgctcgg actgacgcgt tggagtctga aggaatgacc
     2341 aggg
//
LOCUS       DATCGC010000133         1250 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_268066, whole genome shotgun sequence.
ACCESSION   DATCGC010000133 DATCGC010000000
VERSION     DATCGC010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1250
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_268066"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..197)
                     /locus_tag="VIJ87_01325"
     CDS             complement(<1..197)
                     /locus_tag="VIJ87_01325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443117.1"
                     /translation="MKTQLPLLLLLSVLLAGASQANSNRIQVGYCAKLSEIDAAKAAG
                     FDYIELSTSEIVALSDSDFDKL"
     gene            429..1229
                     /locus_tag="VIJ87_01330"
     CDS             429..1229
                     /locus_tag="VIJ87_01330"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEY5443118.1"
                     /translation="MSSAPIEKQYALETFERNSLLRQLIILEPDFLLPRLQVANLDVN
                     ETIYRDGGPIDFVYFPVDSVVSSLGTLHDGTTVEIAMLGKESMVGMSALLGTNFNQYW
                     TRMTLGGRLVRVDTNDLQTIFNRNKIVEHTILKSYVNLVTQISQRAVCNARHSVPERF
                     CSWLLMTHDRLGDKELRLTQELIATRLGTRRAGITVAAHELSERNALEYKRGVLHIQD
                     RSLVEQGTCECYSVLKLTAETSVPQTVEFQSRPTIVPLFDQTALVTRW"
BASE COUNT          307 a          322 c          297 g          324 t
ORIGIN      
        1 agcttatcga aatccgaatc agagagagcc acgatctctg atgtgctcag ctcgatgtag
       61 tcaaatccag cagccttcgc ggcgtcaatc tcgctcagct tcgcgcagta cccaacttga
      121 atccggtttg agtttgcttg cgacgcgcca gcaagcaata cgctgaggag caagagtaaa
      181 ggtaattggg ttttcatttt gagtctcaga gacgcgcttt acttcctttt tcgagaattg
      241 ggtcatccca ggcaaaaagt gatctcagac taactctctc agggccattg gggaaactcc
      301 ctatcgaggt tcagcgatac tcctagtttc gtgagaaatt cggtcgtgag aaactcggag
      361 cccaattcgg cttccttcaa ctgactaccg tggcctccca cagtttccaa ctgaaaggat
      421 ctggtatttt gagctccgca ccaattgaga aacagtacgc acttgaaact tttgagcgaa
      481 acagtcttct tcgtcagctc ataattctcg aacccgactt ccttttaccg cgtctccagg
      541 tcgctaatct tgatgtcaat gaaactatct accgcgatgg tgggcccatt gatttcgttt
      601 acttccctgt cgactcagtc gtctcttcac ttggtacgtt gcacgatggc actaccgttg
      661 agattgctat gctcggtaaa gagtccatgg taggaatgtc agccctactg ggtaccaact
      721 tcaaccagta ctggacacgc atgactctgg gaggccgtct tgttcgagtc gatacaaacg
      781 atctccagac catcttcaat aggaacaaga tcgtcgagca tacaattctg aaaagctacg
      841 ttaacctcgt aactcagatc tcgcagcgtg cggtatgcaa tgctcggcac agtgtcccgg
      901 aacgtttttg ttcctggttg ttaatgactc acgatcgact tggcgacaag gagttgagac
      961 tcacgcagga gttgattgct actcgattgg gaactcgtag agcagggatt acagtggctg
     1021 cgcacgagtt gtccgaaaga aatgcgcttg agtacaagcg gggtgtgctt cacatccaag
     1081 atcggtcgct tgtcgaacaa ggaacgtgtg agtgttactc tgttctaaag ctgacggccg
     1141 aaacatctgt accacaaact gtcgaatttc aaagtcgtcc caccatcgtc cctctattcg
     1201 atcaaacagc tctcgtgacc agatggtaga gcgacgcctc ctgaccacgt
//
LOCUS       DATCGC010000134         2371 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_434566, whole genome shotgun sequence.
ACCESSION   DATCGC010000134 DATCGC010000000
VERSION     DATCGC010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2371)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2371)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2371
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_434566"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2371
                     /locus_tag="VIJ87_01335"
     CDS             <1..>2371
                     /locus_tag="VIJ87_01335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443119.1"
                     /translation="VLVRTVQLNAVTLGVHALLWTVLRRRWLQALESRGREVESLLFL
                     EVSVVAALTLSVIVPTVFMLIFQSVLGTATLTAGDSFGWFTLIVTALTVVVIQRSRSR
                     RVSPLVLTAMLLSVVCTTAFGLRDVDKALIVLNSGTTFVACLMFASSWLPKLYKDQKV
                     LSLFSLDDQWSTQALKLSAIVGGVATFLTFRIVPIIRAPGALRTIIPFFVLSALAAAL
                     SFRTLKRRYLYLAGILCNLAVTNWWLAYAPRNTVAFRVFFEVNIIAACLAGVLWLLFE
                     LRARRLRGAPHRAALSFHNVVVVSACALWVLMITLRFAFPITDSRELQLPGLTWVAFA
                     STIVLMIAVLWDRHAKYATAGLYFLGLIGAAIGLVQLDLSNQNQTWFVVMFLACYALA
                     TSLLWNQRAKLIALAERVGVVPRIEANATGLAWLSVVTVAAVFTTGVIVYWIDLSFES
                     FAFRVSAAMAVGAQAFTFGLLAEGEWKERWQRASIATFLVGTVLLGWSCLTPNVNATW
                     LNRSVILMLEAFTFTAFYGLALDRIRSAKAEWAQSMRACVAPLLGAGIVSLLFCLGTE
                     ISYQLHFGEVRVHPVALIAIGITLVSSVVISVFFALSPNHDPLALSERGRMKYVYGAE
                     LMLTLLFMHIRLTMPWLFHGFFEDYWPLVLMAIAFLGVVASESLRRRELLVLAKPIER
                     TGAFLPLLPVVGFWMATSQVDYSSLLFIVGGLYGLLSVLRRSFVFGALAAVAGNAGLW
                     YVLQRTSDYQFLQHPQLWLIPVALSVLLAAYLNEDKLEEDQLAGIRYCSL"
BASE COUNT          429 a          570 c          660 g          712 t
ORIGIN      
        1 gtgttagtta gaaccgtaca actgaatgcg gtcactcttg gtgtccatgc tctgttgtgg
       61 acagttcttc gtaggcgctg gctccaggcg ttggagagtc gtgggcggga agtagagtca
      121 ctgcttttcc tcgaggtgag tgtggtagct gccctcaccc tctctgtcat tgtgccgaca
      181 gtattcatgc tgatcttcca gagtgtctta ggtacagcaa cgctaaccgc tggagattcg
      241 tttggttggt ttacgctgat agtgaccgct cttaccgttg tagtcataca acgatcgcgg
      301 tccaggcgag tctcaccact tgtcctaact gcaatgctct tgtcggttgt ttgtacaact
      361 gcatttggcc tcagagatgt cgacaaagct ctaatcgttt tgaactcagg tacaaccttt
      421 gttgcatgtc tgatgtttgc gagttcctgg ctgccgaaac tttataagga ccagaaagtg
      481 ctgtcgcttt tcagtctcga cgaccagtgg tcgacgcaag cgttgaagtt gagcgcaatc
      541 gtcggtggtg tggcaacatt tctcacattt cgaattgttc cgattatccg tgcgccaggt
      601 gcattgcgaa cgataattcc gttctttgtc ttgtcggcgt tggctgccgc actttctttt
      661 agaacgctca aacgtcgcta cctctaccta gcgggcattc tctgcaatct tgccgtcacg
      721 aattggtggc ttgcatacgc accccgaaac acagtggcgt tcagagtctt tttcgaagtc
      781 aacatcattg ccgcctgtct ggcaggagtg ctctggttgc tgtttgaact tcgcgccaga
      841 cgccttcgag gagcacccca tcgtgcagcc ttgtcgtttc acaatgtggt tgtcgtttct
      901 gcgtgtgccc tatgggtact aatgatcaca ctgcgcttcg cctttccgat aactgattcg
      961 agggagttgc agcttcccgg tctgacatgg gtcgcttttg cctcaacaat agttctgatg
     1021 atcgccgtgt tgtgggatcg tcatgcgaag tacgcgaccg cgggtcttta cttccttgga
     1081 ctcatcggcg cagcgatcgg tttggtgcag ttagatcttt caaatcagaa tcagacctgg
     1141 ttcgttgtca tgttccttgc ttgctatgca cttgcgacaa gtttgctatg gaaccagcga
     1201 gccaaactca tcgcccttgc cgaacgcgtg ggagtcgtcc cgcgaattga agcgaatgca
     1261 actgggctcg catggttgtc tgtggtgacc gtggcagcgg ttttcactac gggcgtgatt
     1321 gtctactgga ttgatttgag ttttgagagc tttgcgtttc gggtttcggc ggcaatggcg
     1381 gttggagcac aggcatttac ttttggtttg ctggcagaag gtgaatggaa agagcgatgg
     1441 caacgagctt caatcgcgac cttcctggtt gggaccgtcc ttctcggatg gtcctgtctt
     1501 actccgaatg ttaatgcgac ctggttgaac agaagtgtga tcctaatgtt ggaggcgttc
     1561 accttcacag ctttttatgg cctggctctc gacagaattc gttctgctaa agctgaatgg
     1621 gcccaatcga tgagggcgtg tgtggcgccg ctgctgggcg ccggaattgt tagcctgctc
     1681 ttctgtttgg gaactgagat ttcttaccag ctacatttcg gtgaagtacg cgtgcatcct
     1741 gtggctttga tcgcgattgg gattacgctc gtgtcttcag tggtcatttc agtgttcttt
     1801 gcactatcac cgaatcacga tccactcgct ttgagtgaac gtggtcgcat gaagtatgtc
     1861 tatggggcgg agctgatgtt gaccctcctg ttcatgcaca ttcgactaac gatgccatgg
     1921 ttgttccacg ggtttttcga agactactgg ccgctggtgt tgatggctat tgcatttctc
     1981 ggcgtggtcg ctagtgagtc gttgcgccgt cgcgagctat tggtgttggc gaaaccgatc
     2041 gaacgcactg gagcgtttct gcctttgctt ccagttgtgg gtttttggat ggcaacttcc
     2101 caggtcgact attcgtcgtt gctgtttatc gttggtgggc tttacggact gttgagtgtg
     2161 ttgcgacggt cattcgtgtt cggcgcgttg gcggctgttg caggtaatgc tggcctttgg
     2221 tacgtacttc aacgcacgtc ggattatcaa ttccttcagc acccgcaact gtggctgatc
     2281 ccggttgcgc tttcggtatt gctggcagct tatctgaacg aagacaagct cgaagaagat
     2341 caactggctg gaattcgtta ctgttcactc g
//
LOCUS       DATCGC010000135         1599 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_168335, whole genome shotgun sequence.
ACCESSION   DATCGC010000135 DATCGC010000000
VERSION     DATCGC010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1599)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1599)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1599
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168335"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..314)
                     /locus_tag="VIJ87_01340"
     CDS             complement(<1..314)
                     /locus_tag="VIJ87_01340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443120.1"
                     /translation="MCPPLPMTPERFQLISQIYHEALECDHTERVAFLEQQCGRDREL
                     RREVESLLSGGKSAEALLLSQAMNEAVKRLTDETPRSLVGQTLDHYQVLSLSGSGGMG
                     EV"
     gene            complement(710..>1599)
                     /locus_tag="VIJ87_01345"
     CDS             complement(710..>1599)
                     /locus_tag="VIJ87_01345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443121.1"
                     /translation="RLHRYDESMAVLDRAFKQYKLDSEHLHTWVYNIAFIRGDSASMK
                     HEVEAMGEKPNEYIAIDWETNSSAFNGQWKLVQNFSRRSIEMASQSKAKEVAAQYAAE
                     QALRAAVFGHCAEAKSAAAQALSFEHNQVSLTRSGLALALCNEVNETQPLVADLNKEY
                     PTFTQVNGIWLPPTRAALELDHGNAAQAVIELEGASRYEAAGEFWPHYVRGLANLKLS
                     KGAEAAVEFQKILDHRGYAPMSPLFPLAQLGLARAAIFQNDTPKARKAYEDFFALWKD
                     ADPDIPVLIEAKKEYEKIK"
BASE COUNT          377 a          427 c          379 g          416 t
ORIGIN      
        1 tatacttctc ccatacctcc cgagccgctc aatgacaaaa cctgataatg atcgagcgtt
       61 tgccccacga gcgaacgggg cgtttcgtcg gtcagccttt tgactgcctc gttcattgcc
      121 tgcgacagca acaaggcttc agcgctcttc ccgcctgaca gtaacgactc aacttcccgg
      181 cgtaactctc gatctcgacc acactgctgt tcaagaaatg cgacacgttc cgtatgatcg
      241 cattccagtg cttcgtggta aatctgggag ataagttgaa atctctcagg cgtcatagga
      301 aggggtggac acaccgatag ttccgctggt atccaatcaa actaagtttt tctcagcaga
      361 aaattacgct tggtcgtcta gccctgaacg tcaacgaact ttctgggcgc cgttgacgca
      421 agggcttggt tagagcgtag aaaacttagc ataggtctct attggtttca cgtcaggaga
      481 aagaattttg cggcgattaa accgaaatta tgggaagaca gccaacggcg gattcaagcg
      541 gaagatcgcg tttgtgtgcg aatagtgggc tagcggcttt gctttgtcga agatacacat
      601 tgctgacttt gtgtccgata tatgctttca ctcgtagtga aagacacttc ttaatgccca
      661 acaaactttt gagcttgcat ctcacaacaa gacatactcg tatcggacat catttaatct
      721 tttcgtattc cttctttgct tcgatcagaa ctggaatgtc tgggtcggca tctttccaca
      781 acgcgaagaa gtcttcgtat gccttgcggg cctttggagt atcgttttgg aagatagcag
      841 cacgtgctaa tccgagttgc gccagcggaa acagcggtga catcggtgca tacccacgat
      901 ggtccagtat cttctgaaac tcaactgcgg cctctgcccc tttgctgagt ttcaaattag
      961 ccagaccacg cacataatgc ggccagaatt ctccagcggc ttcgtaacga ctcgcaccct
     1021 ccaactcaat aacagcctgc gcagcgttac cgtgatccag ttccagcgcc gcacgcgtgg
     1081 gaggcagcca aatgccgtta acctgtgtga acgtgggata ctctttattc agatcagcca
     1141 cgagtggctg tgtttcattg acttcattac acagcgcgag tgccagccca ctacgcgtta
     1201 gcgacacttg attatgttcg aatgagagcg cctgtgctgc cgccgacttc gcttccgcgc
     1261 aatgaccgaa aaccgcggca cgaagcgcct gttcagccgc atactgtgct gcgacctctt
     1321 ttgctttgct ttgtgaggcc atttcaattg agcgacgtga aaaattctgg accaacttcc
     1381 actgaccatt gaaggccgat gagttggtct cccaatctat cgctatgtat tcatttggct
     1441 tttcacccat cgcttccact tcgtgcttca tcgacgccga gtcgccgcga atgaatgcaa
     1501 tattgtaaac ccaggtgtgg agatgttcgc tgtcaagctt gtattgctta aacgctcgat
     1561 caagaaccgc catcgattca tcgtaacgat ggagccgca
//
LOCUS       DATCGC010000136         2659 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_268105, whole genome shotgun sequence.
ACCESSION   DATCGC010000136 DATCGC010000000
VERSION     DATCGC010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2659)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2659)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2659
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_268105"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            144..1370
                     /locus_tag="VIJ87_01350"
     CDS             144..1370
                     /locus_tag="VIJ87_01350"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family transcriptional regulator"
                     /protein_id="HEY5443122.1"
                     /translation="MRKINTRDFTVATRTTSREINRRIVLNVIREHQPISRADLARHL
                     NITRGVVSTLVQELIAQGVIYEGATGEAARGRKPTFLHIRTGDRLAIAVDVRFTKTYL
                     MLCDFSGRQLALEAHDTIFDVPEFIKDLSTRIRRILKTHGAKATCEGIGVVIPGMVDQ
                     RTGLILNAPALGWRGVEIRDKLAAATRLPVQIENSGRACALAQLWLGRDEATGPNSFV
                     FISVSDGLGVGMVVNGELVRGHDHIAGEFGHIPLSLDGPRCMCGSSGCWEAYISNLAT
                     LSRYFGWNLFKLSPNSLRDAGNSSFTVLDLVARARAGDAKALGAIQATARFLGLGLGS
                     IVNTVNPDCIYMAGEITTAWDLMEDTVRQALAERTLTESAARTPLRLSTTQESPRLSG
                     AAALIAAPSFAAPRVA"
     gene            1496..>2659
                     /locus_tag="VIJ87_01355"
     CDS             1496..>2659
                     /locus_tag="VIJ87_01355"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HEY5443123.1"
                     /translation="MLRLSMIGFRKIHFGVLAVLLAMPLAVAAQVTTATIVGTVSDPS
                     TATVPGAQVTARNVDTGLTRTATSGDGGAYRLEFLPVGNYAVEVTASGFKKSYLNGIL
                     LQVNDTVRVDVVLTVGAVNETVTISETATPEVNTSTPEIGRTIQSAEIAALPLVERNV
                     YTLLDLTPGVQSNNNGVAAASTGTSSLILGFPEQRTLINGGTDGGTGSVNYYLDGGNN
                     MTGLRNTGNILPNPDAIQEFRVQTNSYNAEYGRFASGVINVLTKSGTNQFHGSLFEYL
                     RNTVFNANDWGSQLAKAPFHRNQFGGTLGGPIKSDKTFFFFSYSGLRQSTSSFLSGAI
                     VPTALERIGNFTASATKPTDPATNAPFVCNGVTNVICPNRLDPVAVKIINNYIP"
BASE COUNT          619 a          707 c          685 g          648 t
ORIGIN      
        1 catctccgtg actttaggtc ctaacccact atgatctatc gaaccctgaa aattgagaat
       61 gtcagccgga tcggcaaaaa actcttgaca gatatcgcgt cccctaatat gttcctactc
      121 cgaacaatat cgttcgaatt caaatgcgca aaatcaatac tcgagatttc acggtggcca
      181 cgcgaactac ctcgcgcgag attaataggc gcattgtgct caacgtaatt cgggaacatc
      241 aaccaatctc ccgtgccgat ctggctcgtc acctgaacat taccaggggc gtcgtcagca
      301 cgctggtgca ggaattaatt gcgcaaggcg tcatttacga aggtgcgact ggcgaagctg
      361 cccggggccg aaagccaact tttctgcata ttagaacagg cgatcggttg gcgattgcgg
      421 tcgatgtacg gttcactaaa acctacctga tgctatgcga tttctctggc aggcaactcg
      481 cacttgaagc ccacgacacc atattcgacg tgccggagtt tattaaggat ctgtcgacca
      541 ggattcgaag aatcctcaaa acacacggtg ctaaggccac ttgcgaagga attggcgtcg
      601 ttattcctgg catggtcgac caacgaacag gcttgatttt gaacgcgccg gccctcggat
      661 ggcgcggtgt agaaatcaga gacaagttgg ctgcggccac ccgactgcca gtccaaatag
      721 agaattccgg aagagcttgc gcgctcgctc aattgtggtt agggcgtgac gaggcgaccg
      781 gtccaaatag ctttgtcttt atcagcgtgt cggatggttt aggcgttggc atggttgtaa
      841 acggcgagtt ggttcgcggg catgatcata tcgctggaga attcggacat attccgctga
      901 gtcttgatgg accccgctgt atgtgcgggt catcaggttg ctgggaagct tacatttcta
      961 atctcgctac gctctcgcgc tattttgggt ggaatttgtt caaactcagt ccaaacagtc
     1021 tacgcgatgc cggaaatagt tcctttactg ttctggatct ggtagcccgt gctcgtgccg
     1081 gcgatgcgaa ggcgcttggt gcgattcagg caaccgcccg ttttcttgga ctcggactgg
     1141 gttcaatcgt taacactgtg aatcccgatt gcatttacat ggcgggtgag atcactaccg
     1201 catgggacct gatggaagac accgtacgcc aggcgcttgc cgagcgtact ttgactgaga
     1261 gtgccgcgcg aacaccactt cgcttgagta caacgcagga gtcgccacga ctcagtggcg
     1321 cggccgcact cattgccgca ccaagttttg ctgccccgcg agttgcctag actcaaagac
     1381 tggttaagca aaactattca aggggaaaca caaagattag atggcaacta aggcgtcgtt
     1441 gaagcgacgt ggacgttgtt gcagattttc aaatcgttat ttggagggta ctgacatgtt
     1501 acgtctaagt atgattgggt ttcgtaaaat ccattttggg gtgcttgcag tcttacttgc
     1561 catgcccttg gcagttgctg cacaagtcac aaccgcaact attgtcggta ccgtctcaga
     1621 ccccagtacc gccactgtgc ctggcgctca ggttactgcc cgcaatgtcg atactggcct
     1681 gactcgcact gcgacctcag gcgatggtgg cgcctaccga cttgaatttc tcccggtagg
     1741 aaattacgcc gtcgaagtca ccgcttctgg ttttaagaaa tcgtatctga acggaatcct
     1801 gttgcaagtc aatgacacgg ttcgtgtgga tgtcgttctt acggtcggtg ctgttaatga
     1861 gaccgtgacg atctcggaga ccgctactcc tgaagttaat acgagtactc cggagatcgg
     1921 ccgcactatt cagtcggcag agatcgctgc gttgccatta gtcgagcgca acgtttatac
     1981 actcctcgat ctcacgccag gcgtgcagtc caacaacaac ggcgtcgctg cggcctcgac
     2041 cggaacgagt tcactcattc tcggttttcc tgaacagcga acgctcatca acggcggcac
     2101 cgacggcgga acgggttcag ttaactacta cctcgatggc ggcaataaca tgaccggcct
     2161 gcgaaatacc ggaaacatcc ttcccaatcc ggacgccatc caggaattcc gtgttcagac
     2221 aaatagttac aatgcggagt acggtcgctt tgccagtggc gtcatcaacg tgttgacgaa
     2281 atcaggcacg aaccagtttc atggctcact ctttgaatat ctgcgcaaca ctgtcttcaa
     2341 tgcaaatgac tggggttcgc agttagccaa ggcgcctttt catcgcaacc agtttggcgg
     2401 cactcttggc ggaccgatca aaagcgataa gacattcttc ttcttctcct attccggtct
     2461 acgtcaatca accagttcgt ttttgagtgg cgcgattgtt cctaccgcgt tggaacgtat
     2521 cggcaacttc acagcgtcgg cgacgaagcc aaccgatccg gcgactaacg ctccgttcgt
     2581 ttgcaacgga gtcacaaacg taatctgtcc caaccgtctc gatccggtgg ccgttaaaat
     2641 cattaacaac tacattccg
//
LOCUS       DATCGC010000137         1194 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_235166, whole genome shotgun sequence.
ACCESSION   DATCGC010000137 DATCGC010000000
VERSION     DATCGC010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1194)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1194)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1194
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235166"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(193..>1194)
                     /locus_tag="VIJ87_01360"
     CDS             complement(193..>1194)
                     /locus_tag="VIJ87_01360"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEY5443124.1"
                     /translation="TSQIAQAEAQVIQANSQVLQAQAQLAQMHAQQVKTQLDADRNTR
                     LVESGVVSRQEYDNAVQANLAAKAQVNAAEAGVETARAQIAQAKAQVNTAKAAVAAAK
                     GQLENAKAEVNTAIFNLGLTKIVAPIDGIAGIAQAQIGNLVSPTSATLTTVSTVDPVK
                     VYFTLPEQEYMKFTKRSLIDAQPGASVTPLQLELILGDGTIYPHKGTFLLADRQVDQK
                     TGAIRLAGIFPNPGNMLRPGQYGRVRAMTSTKDDALLVPQRAVTELQGTYQVAVVGTD
                     NKVSIRPVKVSDRSGSMWIVEEGLKPGDAIVAEGTLKIRPGMVVDPKPFTGNAEQAK"
BASE COUNT          237 a          310 c          325 g          322 t
ORIGIN      
        1 tcgatcgtga ttgcgtcagc gccggtgtag ttggttgaga caatgatctg tgggggtaag
       61 atctcaggaa acagtgccag cggcagacct gacatgctga ttagcccgcc gatgatagtg
      121 accagggcga taaccatagc cacaattggt cgccttataa aaaagttgga aatcatttcc
      181 ccactccaaa agttacttgg cttgctcggc gttacccgta aaaggttttg gatctacaac
      241 catgccgggt ctgatcttga gggtgccttc ggcgacgatg gcgtcacctg gcttcagacc
      301 ttcctcaacg atccacatcg atccactgcg atcgctaacc ttgaccggac gaatgcttac
      361 cttattgtca gtaccaacta ctgcgacctg ataagttccc tgtaactcag taacggcgcg
      421 ctgtggaacc aacaaagcat cgtcctttgt tgatgtcatg gctcgcacgc gaccgtattg
      481 gccgggccgc agcatattgc ctggattggg gaagatgcct gccaggcgaa tcgcaccagt
      541 tttttgatca acttgacgat cagcgagtaa gaaggtccct ttatgcggat agatcgtgcc
      601 atcaccgagg atcaattcga gctgaagggg tgtcacgctg gcgccaggtt gtgcgtcgat
      661 cagactgcgt tttgtaaact tcatgtattc ctgttcgggc agcgtgaagt aaaccttcac
      721 cggatcgact gtcgaaacgg tggttagcgt tgcgctcgtc ggactcacga ggttgccaat
      781 ctgtgcttgt gcaataccgg cgataccatc gattggagct acgatctttg ttagtcccaa
      841 gttgaagatt gctgtgttga cctcagcctt tgcgttttca agttggcctt tggcggcggc
      901 gactgccgct ttagctgtgt tgacctgtgc ttttgcctgc gctatttgtg cccgtgcagt
      961 ttcgacacca gcttccgccg cgtttacttg tgctttggcc gcaaggttag cttgaacggc
     1021 gttgtcatat tcctgtctcg atacaacccc gctctcgacg agccgcgtat tgcggtcggc
     1081 gtcaagctgc gtcttgacct gctgcgcatg catctgtgcg agttgagcct gagcctgtag
     1141 gacctgactg tttgcttgta tgacctgcgc ctctgcttga gctatctgtg aggt
//
LOCUS       DATCGC010000138         1248 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_101661, whole genome shotgun sequence.
ACCESSION   DATCGC010000138 DATCGC010000000
VERSION     DATCGC010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1248)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1248)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1248
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101661"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            344..>1248
                     /locus_tag="VIJ87_01365"
     CDS             344..>1248
                     /locus_tag="VIJ87_01365"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase family protein"
                     /protein_id="HEY5443125.1"
                     /translation="MALGTAESIIDLIGHTPLLHLARFAPPPLASVYAKIEWLNPGGS
                     VKDRAALGMILDAERKGLLRPGATIIEPTAGNTGIGLALVGIAKGYRVVLCVPRGFAV
                     EKMKLIEVLGGEIEYVPQESGMKGAIERCHELAEQIEGSFVPQQFENTANPCFHELTT
                     AAEIIEQLEGQIDAVVIGAGTSGTFVGVSRAVRKVNPNVLCVLVEPEGSIYGGGPPGP
                     KKIEGIGQKDFIPPIYDASLTDEVMMVMDDDVCASLKRLARCEGLLGGWSSGAAATAA
                     YKIAERLGPGKRVITVFPDSGERYQ"
BASE COUNT          328 a          284 c          336 g          300 t
ORIGIN      
        1 agaaggaaga tgttcaggag tctttctggt ctctgatgaa gtttgttttt gaatatgagt
       61 atgactccca cggaaattgg atcaaaagaa cgactaccat cttcaataag tcgaaaactt
      121 ttaacgacga ctcgactgag agtaagtcgg ttacaaaacg tgtgatcaag tattactaga
      181 cccgctcagc attctatttt tttcgtggaa agtaccgcac agttcttaac gcaaaaacta
      241 acggacatta acgtttggat tgaaccgttt gacaccccta agtgctcggg ctaccatcca
      301 ccccgatcaa attcgctttg aaagtgaaac tcccttcggg ttaatggctc tcggaacagc
      361 agaaagcatt atcgacctaa tcggtcacac tcctcttctc cacctcgctc gttttgctcc
      421 accgccactc gcaagtgtct acgccaaaat tgaatggctc aatccaggtg gctctgtaaa
      481 agatcgggcc gcactcggca tgattctcga cgctgaacga aaagggctcc tgcgtcccgg
      541 tgcgacaatt atcgaaccaa ccgccggcaa cactgggatt ggattagcac tcgtcggcat
      601 cgcgaagggt taccgggtag tcttgtgcgt accgcgcggg tttgccgttg aaaagatgaa
      661 gctgatagag gtattgggcg gcgaaatcga atacgtgcct caggagtcgg gtatgaaggg
      721 cgcgattgaa cgatgtcacg agctggccga acagatcgaa ggaagttttg tcccacagca
      781 gtttgagaat accgcaaacc cgtgctttca tgagttgact actgcggctg aaataattga
      841 gcagcttgag ggtcagattg atgctgtggt gattggcgct ggaacatcgg gaacatttgt
      901 cggagtctcg cgtgcggtca ggaaagttaa tccaaacgtt ctttgtgtgc tggtagaacc
      961 cgaaggttcg atttacggag gcggcccgcc aggtcccaag aagatcgagg gtatcggcca
     1021 aaaggatttt attcctccaa tctacgatgc ttcactgaca gatgaagtga tgatggtgat
     1081 ggacgacgac gtttgtgcat cactaaagcg actagcacgg tgtgaaggat tgcttggcgg
     1141 ttggtcctca ggtgcggcag caactgcggc gtacaagatt gcggaaagac tagggccagg
     1201 gaaaagagtt attacagtct tccctgacag cggagagaga tatcaaag
//
LOCUS       DATCGC010000139         1141 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_2101, whole genome shotgun sequence.
ACCESSION   DATCGC010000139 DATCGC010000000
VERSION     DATCGC010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1141)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1141)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1141
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2101"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1141
                     /locus_tag="VIJ87_01370"
     CDS             <1..>1141
                     /locus_tag="VIJ87_01370"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HEY5443126.1"
                     /translation="KSIESTYGAGNLQQLRWPTSNIADTPQQALARMFMLAGAQYVDP
                     EFSWKYATAPAGIGFVKGRGLGPQYEGDLLVGASRTTLLNGFLFRFKFTANRQHFAFT
                     DSRLEDRVADNVDKFDQTESESLVIGRDFGVATDIETAPNGNVYVVSLSNGAVYEIKS
                     KPAMLFTATLTGAQETPANNSTGTGTATLLLSPDETTARVSLNFSGLSSAQTAAHIHG
                     PAAVGVPVPILFPLPNGQVNDFQIALSPGQATDLKNGLWYANVHSNNFINGEIRGQFS
                     STPSTSSVQLSATQYVVNEGQGSVTLTVTRLGNTSGAASVDYATSDTAGSNPCSSVTG
                     AASSRCDYLIAVGTLTFNAGESSKSIAIPLVDDGFAEGSENFTITL"
BASE COUNT          284 a          291 c          303 g          263 t
ORIGIN      
        1 tcaaatcgat cgagtcgact tacggagcag ggaatttgca gcaattacgt tggccgacga
       61 gcaatatcgc agacactccg caacaggcgc tcgcccgtat gttcatgttg gcaggagctc
      121 aatacgtcga tcccgaattt agttggaagt atgcaacggc acccgcagga atcggcttcg
      181 tcaaaggacg cgggcttgga ccgcagtatg aaggcgactt acttgtaggc gcttcacgta
      241 cgacgctcct gaatggtttc ctcttccggt ttaagttcac tgcgaatcgg caacactttg
      301 ccttcacaga ttctcggctt gaagatcgag ttgctgacaa cgtagacaag tttgaccaga
      361 cggaaagcga gagcctcgta attggtcgcg atttcggagt cgcaacggac atcgaaactg
      421 cgccaaacgg aaatgtctat gttgtctcgt tatcaaatgg cgcggtttat gaaatcaagt
      481 cgaagccggc aatgcttttc accgcgacac tcaccggcgc gcaggaaaca ccggcgaaca
      541 attcaaccgg aactggaacg gcaacgcttc tgttgagtcc ggatgaaaca acggcaaggg
      601 tgtcgctcaa ctttagcggt ctttcaagcg cgcaaactgc cgcgcacatc catggcccgg
      661 cagcagtcgg cgtacccgtt ccgattttat tcccattacc aaatgggcaa gtaaacgact
      721 tccagattgc gctatcgccc ggtcaggcga ctgacctaaa gaatggtttg tggtatgcca
      781 atgtccattc aaacaatttc attaacggtg aaattcgcgg acagtttagt tcgactcctt
      841 ccacgagcag tgtgcagttg agcgctactc agtacgtcgt taatgaaggc caaggctcgg
      901 taactctgac agtaacgaga ctgggcaata cttcaggtgc ggcgagtgtt gactacgcta
      961 ccagcgatac ggccggttcg aatccatgca gcagcgttac cggagccgca tcgtctcgct
     1021 gtgattacct gattgcagta ggaacgttga cattcaatgc cggtgaaagc agtaagtcga
     1081 tcgcgattcc gctggttgac gatggctttg cggaaggaag tgagaatttc actatcactc
     1141 t
//
LOCUS       DATCGC010000140         2123 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_301259, whole genome shotgun sequence.
ACCESSION   DATCGC010000140 DATCGC010000000
VERSION     DATCGC010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2123
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_301259"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..778
                     /locus_tag="VIJ87_01375"
     CDS             <1..778
                     /locus_tag="VIJ87_01375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443127.1"
                     /translation="PYYQGPRKNTSFGNILEIRDSVSTKYHALVLQANRRLTNGLQFQ
                     SSYTLSRAQDNGGAQSSATFTPGFSALFDPLDPSGDDGLSPFDRRHKFVASVVYNTDF
                     KSLDGASKAILNGWTISPIVNMFSGFRYTAVTNGFSLPTAVFGQTPAGGVNGSNGSLR
                     FGLTPNNAFHSPSIKYVDLRVSRRFTIKENAKIEVLAEGFNIFNRTQVTGVNNRMYVV
                     STSGTSVNATFDPTFGTPSDLSNGFFFRERQVQLADRFEF"
     gene            1073..>2123
                     /locus_tag="VIJ87_01380"
     CDS             1073..>2123
                     /locus_tag="VIJ87_01380"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HEY5443128.1"
                     /translation="MSKIVKLSFAFLMALALSSITMAQSTTTGAVGGVVTNPNKEVVP
                     GASVSVKNGETGKEDTATTDDSGRFKVANLRPGPYSVTVNSTGFSVLTQENVVVEVGR
                     ETSLEIALTVGAVTGTVDVTAEAPVINTTQQDFSSNINQTSINELPINGRRWSNFALL
                     TPGAVPDGTFGLISFRGISGLLNNNTIDGGDNNQAFFAEERGRTRISYSISQAAIKEF
                     QVNTSSYSAEYGRSAGGVVNAVTKSGGNEFHGSAFYYQRNNKWGARNPRSFVTQNVGG
                     VFTPVAFKPEDVRHQFGGTIGGPIVKDKAFFFFSYDEQRRNFPGVATYTALDFLNKAD
                     VCALTAARGAVVTTKT"
BASE COUNT          498 a          548 c          527 g          550 t
ORIGIN      
        1 tccgtactat caaggtccca gaaaaaacac cagcttcggc aacattctcg agattcgtga
       61 cagcgtttcc accaagtatc atgcgttggt attgcaggcg aatcgtcggc tcacaaatgg
      121 tctgcagttt cagagcagct acacgttgtc ccgggcacag gacaatggtg gagcacagag
      181 ttcggcgacc tttactcctg gtttttcagc tctcttcgat ccgcttgatc cgtcgggaga
      241 cgatggcttg tctcctttcg atcgccggca taaattcgtc gccagtgttg tctacaatac
      301 cgacttcaag agccttgatg gagccagcaa ggcgattctg aatggctgga cgatctcacc
      361 aatcgtcaac atgttttctg gattccgcta tacggccgtc actaacggct ttagtcttcc
      421 tacagctgtt ttcggccaga cgcctgcggg tggcgtcaac ggttcgaacg gttcgcttcg
      481 gtttgggcta actccaaaca acgcgttcca ttcgccctca atcaagtacg tcgatctacg
      541 cgtctcgcgc cgctttacga taaaggagaa tgcgaagatt gaagtgctgg cggagggatt
      601 caatatcttc aatcgcactc aggtcaccgg ggtaaataac cgaatgtatg tagtctcgac
      661 gtctggtacc agcgtcaacg ctactttcga ccccacattc ggtacgccaa gtgatctgtc
      721 gaatggcttt ttcttccgcg agcggcaggt acagcttgcg gatagatttg agttctagtt
      781 ttcctggttt tccaggacaa gtaactgcag cgggtgtgct tctcacggag tacacccgcc
      841 cttttttgtc ctgagaaaac tgcatcatta actcgctcga aacatgaacc ttaaatctga
      901 gtaaattaat cggtttgtca ggcaaatcgc cttgcgtaac cttcgtaagc gtggtagaaa
      961 cccacctaac tatcgctaat tcagagttgc aagaatcaac attttataag ggtgtctgcg
     1021 tctcgttgta ggcgctttca acgttaactc aatccctaag gagttcccca gtatgtcgaa
     1081 aattgtgaag ctttcttttg cgttcctgat ggcgctcgcg ttgagctcta tcaccatggc
     1141 gcaatcaacg accacgggcg cggttggcgg cgtggttaca aatccaaata aggaagttgt
     1201 tcccggtgcc tcagttagtg tcaagaacgg cgagaccggt aaagaagata cggcgacaac
     1261 tgacgattca ggtcgcttca aagttgcaaa cctcagaccc ggaccttatt ccgttactgt
     1321 taattcgacc ggcttcagtg tacttactca agagaatgtt gtggttgaag ttggtcgtga
     1381 aacgagtctt gagatcgccc tgaccgttgg cgctgtgacc ggcaccgttg atgtgacggc
     1441 agaagctccc gtgatcaata ccacgcaaca ggacttctcc agcaacatca atcaaacgtc
     1501 aattaacgaa ttgccgatca atggtcgccg ctggtccaat ttcgcgctgc ttacgccggg
     1561 cgcagtgccc gatggcacgt tcggcttgat tagcttccgc ggtatttctg gtctcctcaa
     1621 taacaataca atcgacggtg gtgataacaa tcaggcattc ttcgctgagg aacgtggccg
     1681 cacgcgtatc agctattcaa tcagccaggc tgccatcaag gaattccagg ttaacacttc
     1741 aagttactct gctgagtatg gtcgttccgc tggcggcgtt gttaacgcag tcaccaagag
     1801 tggtggcaac gagttccatg gcagtgcctt ctattatcaa cgcaataaca agtggggcgc
     1861 gcgaaatccg cgcagcttcg tcacgcaaaa cgttggtggt gttttcacgc cagtagcttt
     1921 caaaccagaa gatgttcgcc atcaatttgg tggcacgatt ggaggtccaa tcgtcaagga
     1981 caaagcgttc ttcttcttta gctatgacga gcaacgacga aacttcccag gtgtcgcaac
     2041 ttacacggct ttggattttc tcaataaggc tgacgtttgc gctttgaccg ctgcacgtgg
     2101 tgccgttgtg acaaccaaga ctc
//
LOCUS       DATCGC010000141         1362 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_235258, whole genome shotgun sequence.
ACCESSION   DATCGC010000141 DATCGC010000000
VERSION     DATCGC010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1362)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1362)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1362
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235258"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1362
                     /locus_tag="VIJ87_01385"
     CDS             <1..>1362
                     /locus_tag="VIJ87_01385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443129.1"
                     /translation="PFARFEDPRLGAKISSALFGGLAVLLCYWLLMRYRIRYVLVWLV
                     ALLACSAPFLFRLNMTKAPPFAIIYLVIAIHFLFQKRYWPLLPLAFLFTETYDVFVLL
                     IIAAVIWAAVIGWTERRIEWRPLLWISLGVVAGLVINPYFPQNLHLMYEHARIKITAS
                     DFNTKVGGEWYPYDSWEFLGNSLVACVSMVVGYVALEPAERKRGHYPLFFALFSTVLL
                     ILILRWRRIAEYWPPFAVMFAAFSLQPWLEGTRSTLGRLPKDIMDELEPFLDRDSIVS
                     SASYSSFKETLKIIAVSVVALVLSVALFFNLRATVKEIGQSETHTYYKLGAEWMKEHV
                     PQGHIIFNTDWDDFPRLFYYDSNHRYVSGLDPSYLYDKSPELSQLYERITLGKEDDPG
                     PLIRDRFGATYVFSNNAHDDFFTKARASGWFEIAYEDEQCTIMRIRDEKLSPMQQQEN
                     YPAD"
BASE COUNT          289 a          347 c          350 g          376 t
ORIGIN      
        1 ccgtttgcgc gctttgaaga tccgcgactt ggcgccaaga tttcgtcggc gctgttcggt
       61 ggccttgccg tcttattgtg ctactggcta cttatgcgtt atcgcattcg ctatgtgttg
      121 gtctggctgg ttgccttgtt ggcttgttca gctccgttcc ttttccggct aaacatgacc
      181 aaggccccac cattcgcaat catctacctg gtgattgcca ttcatttcct gtttcaaaag
      241 cgatattggc cactactccc gctcgccttt ttgttcacag agacttacga cgtctttgtg
      301 ctgttgatta ttgccgctgt gatttgggct gctgtgattg gatggaccga acgccgaatc
      361 gaatggcggc cattgttgtg gatcagcctg ggggttgttg cgggactcgt catcaatcct
      421 tacttccccc aaaaccttca tctgatgtac gaacacgcgc ggatcaaaat caccgcatca
      481 gacttcaaca caaaggtcgg tggcgagtgg tacccctacg actcctggga attcctgggt
      541 aattcactgg tggcctgcgt gtcgatggtg gttggatatg tcgcgttgga gcctgccgaa
      601 cgaaagcgcg gacattatcc gctcttcttt gcgcttttct ctacagtgtt gctaatcctg
      661 attttacggt ggcggagaat tgcagagtat tggcctccgt tcgcagtcat gtttgcagcg
      721 ttctctttgc agccatggct cgagggaacg cgctcgacgc tgggacgctt accaaaagac
      781 ataatggacg agcttgagcc gtttctagat cgtgacagta ttgtcagtag cgcttcttac
      841 tcgagcttca aagaaaccct caagatcatt gctgtctcag tcgtagcctt ggtgctgagt
      901 gttgcgctct tctttaactt aagagcgacg gtgaaagaga tcgggcaaag tgagacgcac
      961 acctattaca aactcggcgc ggaatggatg aaggaacacg tgccgcaagg tcatatcatc
     1021 ttcaacactg actgggacga cttcccgcgt ttgttctatt acgactcaaa tcatcgttac
     1081 gtctctgggc tcgatccgag ttatctctat gacaagagcc ccgaattgtc gcaactctac
     1141 gaacgcatca cacttggtaa agaagacgat ccgggccctc tgattcgtga tcgctttggc
     1201 gcgacgtatg tcttttcgaa taatgctcat gacgactttt tcacaaaggc gcgggcgagt
     1261 ggttggttcg agatagccta tgaggatgag caatgcacga tcatgcggat ccgcgatgag
     1321 aaactttcac ccatgcagca acaggaaaac tacccagctg at
//
LOCUS       DATCGC010000142         2843 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_334843, whole genome shotgun sequence.
ACCESSION   DATCGC010000142 DATCGC010000000
VERSION     DATCGC010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2843)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2843)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2843
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334843"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..399)
                     /locus_tag="VIJ87_01390"
     CDS             complement(<1..399)
                     /locus_tag="VIJ87_01390"
                     /inference="COORDINATES: protein motif:HMM:NF018899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="POTRA domain-containing protein"
                     /protein_id="HEY5443130.1"
                     /translation="MPRLGPRILFLACCCLCPFDGSAQSRGPKVIERVVVMGYRRLSE
                     RDIRTHIRMRPGKLFTYELGRRDLDRILATGLFDTKQTRVFGESGVRGGVEVVFEVVE
                     MPLISKVTFKGLSSSEEIEIVEGLRANGIDL"
     gene            968..1171
                     /locus_tag="VIJ87_01395"
     CDS             968..1171
                     /locus_tag="VIJ87_01395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443131.1"
                     /translation="MWKIIFASILFIVGIFEIVLALHGGLREVLMQSSPVRSKRAEPV
                     VILLAGISALVMGIGILLYELVL"
     gene            1433..1924
                     /locus_tag="VIJ87_01400"
     CDS             1433..1924
                     /locus_tag="VIJ87_01400"
                     /inference="COORDINATES: protein motif:HMM:NF033587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS6 family transposase"
                     /protein_id="HEY5443132.1"
                     /translation="MSKEAIRQLVRPTARMRTDFLYHRRRFPAEIISHCVWLYFRFTL
                     SFRDVEEMLAMRGVVLTHETVREWCLKFGQTYANNLRRRTPRPGERWHLDEVFLKING
                     RIHYLWRAVDQDGDVLDILVQSNRDKKAAKKFFRKLLTIVNQNPLIRKVCRNVFTEID
                     ITR"
     gene            2231..>2843
                     /locus_tag="VIJ87_01405"
     CDS             2231..>2843
                     /locus_tag="VIJ87_01405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443133.1"
                     /translation="MVYVDPELNVLLAQKAYFEAHPSEGTLGISPDTQFYIALRFTGD
                     LDALIQAGFTLGNSVGNIAYGVTDLAGLEALAKHPQVEHIEKQRKAQLQLDDSIPDMH
                     VNEVWTRSGDNFTGYNGKDVIVGIIDTGIDIRHHAFRRADGSSRIAAIWDQTLTAQGG
                     ETTPSAITQPTIATSPTPLAYGVEYARGQITDTIQNSSPTVPVR"
BASE COUNT          697 a          744 c          685 g          717 t
ORIGIN      
        1 cagatcgatt ccgtttgctc gcaagccctc tacaatttcg atttcttcac ttgaactcaa
       61 gcccttgaaa gtcacttttg aaatcaaggg catttcaacg acctcgaaaa ctacttccac
      121 accacctcgc acaccgcttt ctccaaaaac tctagtttgc tttgtgtcga aaagtcctgt
      181 agccagaatt cgatctagat cgcgtcgccc taactcatac gtaaataatt tgcccgggcg
      241 cattcgtatg tgcgtccgta tgtcacgctc cgataaccgg cgatagccca tcaccaccac
      301 ccgctcaata acctttggtc cacgcgactg cgcgcttcca tcgaaaggac acaggcaaca
      361 acatgctaag aacaaaatgc gtgggccaag cctgggcatt attttgatac taataacttt
      421 ctttgctatt cgacgccatt caaaaggcga gcaccgaatg ttgcgctcga gcggatcgcc
      481 tacgcaacta cgtcaaccac ttatgatgaa gcatctcgcc gaacaaaaaa caagcttcaa
      541 ctcatcgcga accggagtaa cgaaaagcgt gactggtgtt ggcggattcg ccgttttggt
      601 tcccgggtaa ccttgaccga gagatccaat agtaatatca gtcagttagt tggcgttgtc
      661 tcgatcgaat gagagcgatc ggccgccaag ataggtgagt ctcgttgttg ctccagccgt
      721 ttaacgtgcg tgccagggtc agaggcaatg cgattctccg gcgctcagta tgcttgatga
      781 tcgaacctcc ccaaagattc gatcaactcg gaagatcgca atctagccaa tggatgccgc
      841 cgagcacacc cgtcgcggtt actaatgcgg ttggtagtaa tgaagctgtc aactgctgaa
      901 tccgttgacg ccaccctcgc cgacgatcgg cgaaggaatt ggagccttgt agtagaattc
      961 tattgcaatg tggaaaatta tttttgcctc tattcttttt atcgtcggca tttttgagat
     1021 tgtcctggcc ctccacggag gtctgcgaga agtgctgatg cagtcaagtc ctgtgcgttc
     1081 taaacgcgct gaaccggttg tgatcttatt agctggaatc tctgcgttag tcatgggaat
     1141 aggcattctc ttgtatgaat tagtcttgta aggttgaaga ccaaggtcgc aattgaccaa
     1201 tgctgatatt gcggataata gtgggcctaa tactattggg tggcgcggct tgggccgtgg
     1261 tcaagaccta taaagggcgt ggcaaatcgt catgggttat tctcatgttc tccctctttc
     1321 tcacggctct ggggttctat ttggttattc gcgctggcgc cgagtttctg cgggatttca
     1381 ggataggctc agaatggatt aagtaaaatc gctggaggta ttgtcagggt aattgtctaa
     1441 agaggcgatc cggcagttgg tgcggcctac tgcaaggatg cgcaccgact ttctttatca
     1501 tcgtcgtcgc ttccctgccg aaatcatcag tcattgtgtt tggttgtact ttcgcttcac
     1561 cttgagcttc cgcgatgttg aagaaatgct ggcgatgcgt ggcgtggtcc tcactcatga
     1621 aaccgtcaga gaatggtgcc tcaagttcgg tcagacctac gctaacaatc tgcgccgaag
     1681 aactccgcgg ccaggcgaac ggtggcatct cgacgaagtg tttctcaaga tcaatggacg
     1741 cattcactac ttgtggcgcg cggttgatca ggatggagat gttttggaca tcctggtcca
     1801 aagcaatagg gataagaaag ccgccaagaa gttcttccgc aagctattaa ctatagtcaa
     1861 ccagaatccc ctgatccgta aagtttgccg aaatgttttt actgaaattg acattaccag
     1921 gtgaggggca gcactgtata aatctggatg tataaatctg gatctgtata aatctggatc
     1981 ttgacatcgc tcagcctcgc atctatattg ctgccgttta caaacgctaa accaaactcg
     2041 ctggtccccc cgaccacttc ctcgcgtcgt cagcgattca ttcctttaaa ccgcagcgtc
     2101 ctgtttacgg cctcggctgt ttcaaaaatg cgcgaatcta gtcttacaac ccaaggttcg
     2161 cccctttcga cccgtcagta gccgatctcc cgacatcggt taaccgaccg caaccgtcgg
     2221 tgcaagtcac atggtatacg tagacccaga gttgaatgta ctgctggcgc agaaagcata
     2281 cttcgaggct catccttccg aaggaacact cggtatcagt cctgataccc aattctatat
     2341 tgcattgaga tttaccggag acctagacgc gcttattcaa gccgggttca ctcttggaaa
     2401 ctctgtcgga aatatcgcct acggggtaac cgacctcgcc ggacttgagg ctctcgccaa
     2461 acatcctcag gtggagcaca tcgaaaaaca gagaaaagca caactacaac tcgatgacag
     2521 catacctgac atgcatgtca acgaggtttg gactcgttct ggcgataatt ttaccggcta
     2581 taacggaaaa gacgtgatcg taggcatcat cgacaccggg atcgatatca ggcatcacgc
     2641 ctttcgaagg gccgacggat cgtcgcgcat tgcggctatc tgggaccaga cgctcacagc
     2701 ccaaggtggg gaaacaaccc cctcagctat cactcagcct acgatcgcga catcgccgac
     2761 accgctcgct tacggcgttg aatatgcgcg tggtcagatt accgacacca ttcaaaattc
     2821 gagccctacg gtacctgtgc gcc
//
LOCUS       DATCGC010000143         1128 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_201595, whole genome shotgun sequence.
ACCESSION   DATCGC010000143 DATCGC010000000
VERSION     DATCGC010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1128)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1128
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201595"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..446)
                     /locus_tag="VIJ87_01410"
     CDS             complement(<1..446)
                     /locus_tag="VIJ87_01410"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S1C family serine protease"
                     /protein_id="HEY5443134.1"
                     /translation="MKLRSPVSTVLNTFVLACLLPNILCVTSVFSASLRYTNPINGNR
                     IDTENADFLTQDLLPELVRRIKPSAVAIETFDSHNEKLSRGSGFFIENDRIVTNRHVI
                     EGAYRAEIHSSTGTVYPVRGVLAVDAEGDIAVLKIDSPTTYVRPLPL"
     gene            complement(487..996)
                     /locus_tag="VIJ87_01415"
     CDS             complement(487..996)
                     /locus_tag="VIJ87_01415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443135.1"
                     /translation="MNDGIESIIQIVALLFFLGLMLVPFAAFFVYVFYQNSKRKRIRA
                     RAQTAYGHMIGTQIALAVRYCSEPRFRSWFKIFPWEGTGLLVPSKGVITFVGEKLNGT
                     PLNIQFGRESATVIWLGKCPWPNGAVSWFAIDTQGSKHYFTSETGAFVFGSDKSTKEA
                     YDQSQTSFA"
BASE COUNT          292 a          263 c          298 g          275 t
ORIGIN      
        1 agcggcaaag gtctaacgta ggttgttggc gagtcgattt taagtacggc gatatcacct
       61 tcagcatcga cagcgagaac acccctcacc ggatagacgg tgccggtcga tgagtgaatc
      121 tccgcacgat atgctccttc aatgacatgc cggttggtaa caatccggtc attctcgatg
      181 aagaaaccac tgcctcgaga taacttctcg ttgtgtgagt cgaatgtttc gatggcaacg
      241 gcggatggct taattcgtcg gactagttcg ggaagaagat cctgagttag gaagtccgca
      301 ttttcagtgt ctatgcggtt accattaatc ggatttgtgt accgcagaga cgcggagaac
      361 acagaggtca cgcagagaat gtttggaaga agacaggcta agacaaaggt atttaagaca
      421 gtagagaccg gggaacgtaa cttcatggaa ttcgagtata gcaatagttt caactgtctc
      481 taggtgctag gcgaagcttg tttgcgattg atcatacgcc tctttagtgg acttgtctga
      541 gccaaaaacg aaagcgccgg tttcggaagt gaaatagtgt ttgctgcctt gtgtatcaat
      601 tgcaaaccag gacaccgctc catttggcca tgggcatttg cccaaccaga ttaccgtcgc
      661 actttcgcga ccaaactgaa tgttgagcgg agtgccattg agtttctcac cgacaaacgt
      721 gatcacccct ttcgaaggta ctaataaccc agtgccttcc cagggaaaga ttttgaacca
      781 ggatctaaag cgaggttctg agcaataacg aacagccagg gcgatctggg tgccgatcat
      841 atgtccgtac gcagtttgcg cacgtgcacg gatccgcttt cgtttgctgt tttgataaaa
      901 gacgtaaaca aagaacgcag cgaatggcac cagcatcagt ccgagaaaga aaaggagagc
      961 gactatctgg atgattgatt caataccatc gttcatgttg ggctagtgct tccttcctag
     1021 cgataccctt tagtgacgcc ttgccagtaa tgggcgcgct cttctgggac cgcaggcgtc
     1081 ctcgcctgca cttgtcgcca cagaaacgtc ctgagttgag ctggcagg
//
LOCUS       DATCGC010000144         2186 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_467802, whole genome shotgun sequence.
ACCESSION   DATCGC010000144 DATCGC010000000
VERSION     DATCGC010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2186)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2186)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2186
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_467802"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..479)
                     /locus_tag="VIJ87_01420"
     CDS             complement(<1..479)
                     /locus_tag="VIJ87_01420"
                     /inference="COORDINATES: protein motif:HMM:NF019334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEY5443136.1"
                     /translation="MLRCPTCGKDYPSEVQFCPEDQTALQADATIIGEGVTDPLIGHT
                     LDGKYQIEERLGIGGMGTVYRARHLLIDRAVAVKVLNQRLVDDDASRVRFQREAKAAG
                     RLHHLNAVAVTDFGQSSEGYVYIVMELLEGRTLREILAKEAPLETARAVSLMLQVASA
                     "
     gene            complement(809..>2186)
                     /locus_tag="VIJ87_01425"
     CDS             complement(809..>2186)
                     /locus_tag="VIJ87_01425"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: protein motif:HMM:NF003792.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HEY5443137.1"
                     /translation="GKTIQVIPHITNEIKEAVRKVAEKDKPDVVLVEIGGTVGDIESL
                     PFLEAIRQMGNEEGTGNALFIHVTLVPYIAAAGELKTKPTQHSVRDLREIGIAPDILL
                     CRSEKPLSRELRGKIALFCNVKESAVISAQDVDTIYDVPLAFHEQGLDSLIVSALGLE
                     QRAPQVDLSEWRNLVSTIREPSGGETSIAIVGKYVELEDSYKSLREALTHGGVANNLR
                     VDVKWIESEELLDDDNFEARLREFDAILVPGGFGKRGIAGMIRAIYHARKTRTPYFGI
                     CLGMQTACIEFARNVCDLKDADSTEFDLETPHPVIFKLRDLVGVEELGGTMRLGAWPC
                     RLAPGSLVSEIYGGAEEISERHRHRYEFNPEYRQALEKEGLVFSGVSPDGKFVEMIEL
                     PRDVHPWFVAGQFHPEYKSKPLSAHPLFASFVKAAHENRLQSETSMEKNGEVDLIVHE
                     RLSATSGD"
BASE COUNT          525 a          620 c          521 g          520 t
ORIGIN      
        1 gccgaagcga cttgcagcat caacgagacg gcgcgcgcgg tttcgagtgg tgcttccttc
       61 gcgaggatct ctcgaagcgt tcgcccttcg agcaactcca tcacgatgta gacatagcct
      121 tccgacgatt ggccaaaatc agttaccgcg acggcattga gatggtgcaa ccgtcccgcg
      181 gcttttgcct cgcgctggaa acgaactcgg gaagcatcgt catcaacgag acgttgattt
      241 aggactttga cagcaacagc gcgatcgatc agcaagtgcc gagcgcggta gacggttccc
      301 atcccaccga ttccgaggcg ctcttcgatt tggtatttgc cgtcaagcgt gtgaccaatt
      361 agcggatcgg tgacaccttc gccaatgata gttgcgtctg cttgtaatgc ggtttgatcc
      421 tccggacaaa actgaacttc agaggggtag tcttttccac atgttgggca acggagcatc
      481 aggtaactgt ttgttcgttg ggagtaaggg tctgaaggat tatggcttaa aaccgtcttt
      541 gatgcacttg gccatcgcta atcatttcgg acccaggacg agggcgaaga tcaaagcaag
      601 acaaagacat accgtcagga agatagcaca ggtcaaagca acgactctgc gcatgctcac
      661 gtgaaagtct tgttcttctt gtcggtttag ttgaaatggt ttgagtcgcc agtcacgtgg
      721 cattcggctt ctgacttttg caattgcgag ataccagcac ccggcggtga ttagtattaa
      781 gagtaaccaa agcacagaat cgtgaccgtc agtctccgct cgtcgcgctc aaccgttcat
      841 gcacaatcaa atcaacctcg ccattctttt ccatcgacgt ttcggactga agtcgatttt
      901 cgtgtgcggc cttaacaaac gaggcaaata gtggatgtgc acttaaaggt tttgacttgt
      961 actccggatg aaactgaccc gctacaaacc acggatgcac gtcacgcggc aattcaatca
     1021 tctcgacaaa cttcccgtca ggcgataccc cgctaaatac cagcccttct ttttccagcg
     1081 cctgccggta ttcgggattg aactcataac ggtggcgatg acgctcgctg atctcttctg
     1141 cgccaccata gatctcactc accagtgagc ccggcgcgag ccggcaaggc cacgctccca
     1201 aacgcatagt gccacccagt tcttccacac cgactaaatc acgcaactta aagatcaccg
     1261 gatgcggtgt ctcaagatca aactcggtcg aatcggcatc cttcagatca caaacattgc
     1321 gcgcaaattc aatgcaagcg gtttgcattc ccaaacaaat tccaaagtac ggcgtgcgtg
     1381 tcttacgtgc gtgatagatt gcgcgaatca ttccggcgat tccgcgcttt ccaaagccgc
     1441 ccggtaccag gatcgcgtca aactcacgaa gccgtgcttc aaagttatcg tcgtccaaaa
     1501 gctcttcgga ttcgatccac ttcacatcga cccgcagatt gttcgctacg ccgccatgcg
     1561 tcagcgcttc tcgcaaagac ttgtacgagt cttccaactc cacatactta ccgacaatcg
     1621 ctatcgaagt ttcaccacct gaaggttctc gaatagttga aaccaggttg cgccactcgg
     1681 agagatccac ttgcggcgct cgttgctcca agcccagtgc cgacacaatc aaactatcca
     1741 aaccctgctc gtgaaatgcc aggggcacgt cgtaaatcgt atctacgtcc tgcgcactaa
     1801 tgaccgccga ctctttcacg ttgcagaaca acgcaatttt tccccgcaac tcacgcgaca
     1861 gcggcttctc ggatcgacaa aggagaatgt caggagcaat accaatctcg cgaaggtcgc
     1921 gaacggagtg ttgagttggt tttgttttca actcgcccgc tgcggcaatg taaggaacaa
     1981 gcgtgacgtg gatgaacagc gcgttgccag ttccctcttc attccccatt tgcctgatcg
     2041 cttcgaggaa cggaagcgat tcgatgtcgc caactgttcc gccgatctcc acaagaacca
     2101 cgtcgggttt gtctttctcc gctacttttc gaacagcctc tttgatctcg ttagtaatat
     2161 gcggaataac ctgaatcgtc tttccc
//
LOCUS       DATCGC010000145         1418 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_268215, whole genome shotgun sequence.
ACCESSION   DATCGC010000145 DATCGC010000000
VERSION     DATCGC010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1418)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1418)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1418
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_268215"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..507
                     /locus_tag="VIJ87_01430"
     CDS             <1..507
                     /locus_tag="VIJ87_01430"
                     /inference="COORDINATES: protein motif:HMM:NF015862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme-binding protein"
                     /protein_id="HEY5443138.1"
                     /translation="RLRAAGFGSYVDRALADGLRLDGSVAFTDRANGFLHRPFFPDGI
                     DNTAAGPFSTPISEWSPFNDGLQLDIIKTNLVSVITPPFGPLFTCTSIPGLANGIQIF
                     PGSVPLYKNGVLVGAIGISGDGVDQDDLIGAAGANGFSPAPAIRSDQVFVRGVRLPFL
                     KFPRSPNL"
     gene            525..1331
                     /locus_tag="VIJ87_01435"
     CDS             525..1331
                     /locus_tag="VIJ87_01435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443139.1"
                     /translation="MTRRSTRLSIAAASQLLLLTLVFSFTPSTSSQTQSSSTRPTGVL
                     RLRVRVKIDEATKGLSRKRFYLIKGTLEQNTPVLDAAKERGVTSRDCFYSKIGASQAL
                     IDWLRAGDCESIYCREVDQEFINGPKAVPEFASAYAAGQKEFGTGDVGRKWLSTNLSA
                     ELRDGFYQQRRTALQLLIKQAEALSGAQVLSVMTDRNGTAYFTDLEPGTYVLTNLLAT
                     EIGQSAASWNCEVQIKPGDIATEKPYQVSNRKDKNVKCVAVEKPLPACVK"
BASE COUNT          336 a          358 c          376 g          348 t
ORIGIN      
        1 agattgcgtg ctgccggttt tggctcctat gtagatcgtg cgctcgccga cggcttgcgc
       61 ctggacggtt ccgttgcttt caccgaccgc gctaacggct ttttgcatcg accgttcttt
      121 ccggatggca ttgacaacac cgctgccgga cctttcagta caccgattag cgaatggagt
      181 ccgttcaatg acggtctaca gttggacatc atcaagacaa accttgtctc cgtcataacg
      241 cctccatttg gaccgctctt tacgtgcact tcaatacctg gtctggccaa cggtatccag
      301 atttttccgg gcagtgttcc tttgtataag aacggtgttt tggttggagc gatcgggatt
      361 agcggcgatg gagtcgatca ggacgacctg attggagcag cgggagcaaa tggtttttcg
      421 ccggcgccgg ctattcgatc agaccaggtt tttgttcgcg gtgtgcgtct accattctta
      481 aagtttccgc gcagtccaaa tctttagtga acagttcaac cgacatgacc agaagaagca
      541 cgcgactgag catcgccgcc gctagtcaac ttctccttct tacgctcgtc ttctccttta
      601 ccccttcgac cagttcacag acccaatcaa gttcgacacg acctactggc gtcctgcgtt
      661 tgcgtgtcag agtaaaaatt gacgaagcca caaaaggtct gtcccgcaaa aggttctatc
      721 tgatcaaagg aacactcgaa caaaacacgc ctgtgcttga tgcggcaaag gagcgaggcg
      781 ttaccagtcg agactgtttc tattcgaaga ttggtgcgag ccaggcgctg attgattggt
      841 taagagctgg cgattgcgaa tcgatctact gtcgggaagt cgatcaagaa ttcatcaacg
      901 gcccaaaggc cgttccggag tttgcaagcg cttatgcagc aggacaaaaa gagttcggga
      961 ctggagatgt cggtagaaag tggttgagta cgaacctgtc agctgagcta cgtgacggct
     1021 tctatcaaca acgacgaacg gcactccagt tacttatcaa gcaagctgaa gcgttgtcag
     1081 gcgcgcaggt gttgtcagtt atgacggatc ggaacggcac ggcgtacttt acggatcttg
     1141 agccgggcac ttacgtgtta acgaacctgc tcgcaactga gatcggacaa tcagcagcaa
     1201 gctggaattg tgaagtacaa atcaagcctg gcgacatagc caccgaaaaa ccttatcaag
     1261 tgtcgaacag gaaagacaaa aacgttaagt gtgttgcggt cgagaagccc ttgccggcgt
     1321 gcgtgaaatg aactgtcttt acatcttctc tgtgcgttct ctgcgtctct gcggtggaat
     1381 cagtcgcttc gatgttttac cgccgagacg gagagaac
//
LOCUS       DATCGC010000146         1333 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_101719, whole genome shotgun sequence.
ACCESSION   DATCGC010000146 DATCGC010000000
VERSION     DATCGC010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1333)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1333)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1333
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101719"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..469)
                     /locus_tag="VIJ87_01440"
     CDS             complement(<1..469)
                     /locus_tag="VIJ87_01440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443140.1"
                     /translation="MIKHLITLIAFLILFTVLDHVADVASQIPASTLRASDSSNKPPD
                     EDGFIQRWLILEPLNTNGLTDTAVQAAVKKEYFADQLNVVPRDGDKVNVDGAELTWHA
                     LDTTNYNVNLFHFARAYSKKTSDVLFWAVTVINSPREMRDVRLAIGSNASSVWW"
     gene            complement(493..>1333)
                     /locus_tag="VIJ87_01445"
     CDS             complement(493..>1333)
                     /locus_tag="VIJ87_01445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443141.1"
                     /translation="AGPFLDNMGTDMLRGGGKLFVGSSGRLIGPGHFGLFDFGDGIQR
                     FSLHYEADLDKGGASILDVRPLLWKDNWPVAGERFVGGTYQIESLRTGTSLELAVEGF
                     PVGGRPVRRGPPPGSPGAPLSAPTGGGAPPIGGGVFAGTGKPIPTQEVTEVSKKWPEG
                     NVDVRMGNYMCQAQQKWTIEPISGSAYLGSPYFKITIAGTDRTLTATDDAELVAMPIF
                     TGRPEQLWRFDELADGSWRIMPKAIPSLKQSLALSAVGSSFATFASFDSRSEKQRWLL
                     KTP"
BASE COUNT          314 a          364 c          351 g          304 t
ORIGIN      
        1 cccaccacac tgacgaggcg ttagagccga ttgccagtcg cacatcacgc atttcgcgcg
       61 gggagttaat gacggtcaca gcccagaaca gaacatcgga ggtcttcttg ctgtaagctc
      121 gggcgaagtg aaaaaggttg acgttgtagt tggtagtatc caaagcatgc cacgtaagtt
      181 cagcaccatc gacgttcact ttgtcgccgt cacgaggaac aacgttcaac tggtccgcga
      241 aatattcttt cttgactgct gcttgcactg ccgtgtcagt tagtccattc gtgttaagcg
      301 gttccaggat gagccagcgc tgaatgaacc cgtcctcatc gggtggtttg ttcgacgagt
      361 cggaagccct caacgtggaa gcaggaatct gagacgcgac atccgcaaca tggtcgagta
      421 cggtaaacag aattagaaac gcaatcagtg ttatgaggtg cttaatcata agtttcggcg
      481 attacagttt gattatggtg ttttaagaag ccatcgctgt ttctcgctac gtgagtcaaa
      541 actggcaaac gtcgcgaaac tactgccaac cgccgagagc gcgagcgact gtttcaagct
      601 tggtatcgcc ttcggcatga ttcgccaact gccatcagca agttcgtcga accgccaaag
      661 ttgttcaggt ctccccgtga agattggcat cgcgaccagc tctgcgtcat cggtagcagt
      721 caatgtacgg tccgttccgg cgatcgtgat tttgaaatac ggcgaaccga ggtaggcgga
      781 accagagatt ggctcgattg tccacttctg ctgagcctgg cacatgtagt tacccattcg
      841 tacgtctaca ttaccctcag gccatttttt cgaaacctct gtgacttctt gtgttgggat
      901 aggtttgcct gtacctgcga agacgccacc accgatggga ggcgctccgc caccggtggg
      961 cgcgctcaaa ggcgcaccgg gagatcctgg tggtggccca cgtctcaccg gcctcccacc
     1021 cacggggaat ccttccaccg caagctcaag agaagtgccc gtgcgcaaag attcgatctg
     1081 ataggtgcct cccacaaacc tttcaccggc gacgggccaa ttgtctttcc aaagcagtgg
     1141 gcgaacatcg agtatgcttg ctccaccctt atcaagatca gcttcgtagt gaagtgaaaa
     1201 tctctgaatg ccgtcaccaa aatcgaaaag gccgaagtgc cctggaccaa tcaaacgtcc
     1261 ggatgaccca acgaaaagct tgcctccgcc gcggagcatg tcggtgccca tgttgtcgag
     1321 aaatggtcct gca
//
LOCUS       DATCGC010000147         2678 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_235318, whole genome shotgun sequence.
ACCESSION   DATCGC010000147 DATCGC010000000
VERSION     DATCGC010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2678)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2678)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2678
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235318"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2083
                     /locus_tag="VIJ87_01450"
     CDS             <1..2083
                     /locus_tag="VIJ87_01450"
                     /inference="COORDINATES: protein motif:HMM:NF014433.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ArsA family ATPase"
                     /protein_id="HEY5443142.1"
                     /translation="GVTSKRRTSPRRSLPISLSTSRYIFFGGKGGVGKTTAASATALF
                     LLKHARDREQILLFSTDPAHSLSDSLTKRIGSRLVEVSRNRSARLFAFEMDSRAALED
                     FRKQHGKVLAEIAERGTLLDESDINELLGLSLPGLDEVMALFELSELDRSATYSRIVI
                     DTAPSGHTTRLLRLPEVFKRMVTALDRMADKHRYMVAHFARRRVALDEVDLFLRDITE
                     RIERVKRLLYQSDETNFVLVSIPEALSVQETKRYFESLRSEGVAVTDLVVNRVEETHG
                     DCTFCRARVASQRPWLKELKKSFKGIRQHEVPLQENEVRGVDSLLLFGRQIWEDTSST
                     GSARVASKQRSLPKTKPAVTSKFAFGERRIWIFGGKGGVGKTTAAAAYALLIAKTHSK
                     QKVLLFSSDPAHSLSDSFDEQIGPLKKGIGGVRNLDAMEIDPGQWFEVLKQRYRSWTD
                     ELFGSLASGSSLEIKFDREAMRELVELTPPGIDEIAALGAISDLLDENQYHSIVLDTA
                     PTGHLIRFLELPQIALSWVRTFIKLLLKYQHIVHANQVAEELIELSKRIKRVLALLTD
                     STLCEFVGVAIPERMSLEETIDLRDALQRLSVPMRKLLVNGIVPTEGAATCHFCNSRR
                     GGQDLVLKSFRKQFGGSVELFVAPQQNQDIRGVDLLLKHIQAWHLFGETRKTGQGKLR
                     KSSVAVKNVDK"
     gene            2118..>2678
                     /locus_tag="VIJ87_01455"
     CDS             2118..>2678
                     /locus_tag="VIJ87_01455"
                     /inference="COORDINATES: protein motif:HMM:NF018129.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GvpL/GvpF family gas vesicle protein"
                     /protein_id="HEY5443143.1"
                     /translation="MESSKPNSRETPNRTDGTGYYVYCIADSLAAQEIVQGPVPNAIE
                     ENVALELITRNSLTAVVSVVPLSEFGEDALESRLADATWTAIHAMRHEQVVEHFASRT
                     SVVPLRFGTIYLDSAGIEQMLGENEKKLSEIVERLRGRVEWGVNIYCNRQTLMDNITN
                     LSPRLRQMREEAKAASPGQAYLLQKKI"
BASE COUNT          681 a          625 c          723 g          649 t
ORIGIN      
        1 aggcgtgacc tcaaagagac gcacgtctcc tcgccgaagc cttccaatca gtctttcaac
       61 atctcgttac attttctttg gcggtaaggg aggagttggc aagacaacgg ccgcctccgc
      121 aaccgcgctc ttcctgctca aacacgcaag agaccgcgag cagatcctgc tcttttctac
      181 tgatcccgca cattcactct cagacagtct aaccaaacgc atcggcagtc ggctggttga
      241 agtaagtcgt aatcgcagcg ctcgattgtt tgcgtttgaa atggattcca gagccgcgct
      301 ggaagacttt cgcaaacagc acggcaaggt attagccgag atagctgaac gcggaacgct
      361 gttggatgag tctgacatca acgaactctt aggcctttcc ttgccggggc tcgatgaggt
      421 aatggcgtta tttgaactca gtgaacttga tcgatctgct acctactccc gcatcgtgat
      481 tgatactgcc ccgtctggcc acacgactcg actacttcgt ttaccggaag tcttcaagcg
      541 catggtgact gctctcgatc gcatggcgga taagcatcgg tacatggtcg cgcactttgc
      601 tcgccggcgc gttgctttag atgaagttga tctttttctt cgtgatatca ctgagcgcat
      661 cgagcgagta aaacgtctgc tttaccagtc tgacgagaca aactttgttt tagtttcaat
      721 tcctgaagcc ttgagtgtgc aggaaacgaa gcgctacttt gagtctttgc ggtcagaagg
      781 tgtcgcggta acggatctcg tcgttaacag ggttgaggaa acgcatggtg attgcacgtt
      841 ttgtcgggct cgtgttgcta gtcagcgtcc ctggttgaag gaattgaaaa agagcttcaa
      901 agggatccgt caacacgaag tgccattaca agagaacgaa gttcgtgggg tcgattcact
      961 tctattgttt ggccgacaga tttgggaaga cacaagttca acaggctcgg caagagtagc
     1021 ttcaaagcaa aggtctctgc cgaaaactaa gccagcggta acaagtaagt ttgcctttgg
     1081 tgaacgacgc atctggatct tcgggggcaa aggaggagtc ggcaaaacga ccgcggctgc
     1141 tgcttacgcg ctcttgatag cgaagacaca ttcgaagcag aaagtattgc tattctcgtc
     1201 agaccctgcc cactctcttt cagacagttt tgatgaacag attgggccgc tcaaaaaagg
     1261 aatcggcgga gttcgcaatc ttgacgcaat ggagatcgat cccggtcagt ggtttgaagt
     1321 tttgaaacaa cggtatcgat cctggaccga tgagttattt ggttcattgg caagcgggtc
     1381 gagtttggaa attaagtttg accgtgaggc aatgcgggag ttagtggaac tgacgccacc
     1441 gggcattgac gagatcgctg cgctaggtgc gatcagtgat ctcttagacg agaatcagta
     1501 tcactcgatt gtgctagata ctgcgccaac cgggcacctg attcgttttc tcgagttacc
     1561 acaaatcgcg ttgtcgtggg tgcgaacctt tatcaagctg ctgctcaaat accagcacat
     1621 cgttcacgcg aaccaggtcg cggaagagtt gattgaatta tcgaagagaa tcaagcgtgt
     1681 acttgcattg ttgaccgatt cgacgctttg tgaatttgtc ggagtcgcca ttcctgagcg
     1741 gatgagtttg gaagagacca tcgatctgcg cgacgcgctg caacgactat cggtaccaat
     1801 gcgtaagttg ctagtgaacg gaattgtccc gacagaagga gctgccactt gtcacttttg
     1861 caattcaaga agaggagggc aggatctggt attgaagagt tttcgcaaac agtttggcgg
     1921 ctcagttgag ttgtttgttg cgcctcaaca aaaccaagac atccgaggtg ttgacttgtt
     1981 actgaaacac atccaagcgt ggcacctgtt cggcgagacc cgaaagacag ggcaagggaa
     2041 gttgcggaaa agctcagtcg cagtaaagaa tgtcgataag taaccagact aaacgatagc
     2101 ttcgtcagag tgattgaatg gaaagtagta agcctaactc acgagaaact cctaaccgta
     2161 cagacggcac cggttattac gtctactgta ttgccgacag cttggcggcg caggaaatcg
     2221 ttcaaggacc agttccgaac gcgattgagg aaaatgtggc actcgaactt atcactcgaa
     2281 actcgctgac agccgtagtg agcgtggttc ctttatcaga atttggagag gacgccttgg
     2341 agtcgcgcct agctgacgcc acttggactg ccattcatgc catgcgacac gagcaagttg
     2401 tcgaacactt tgccagtcgg acaagtgttg ttcctctccg cttcggaacg atttatctgg
     2461 atagtgccgg catcgagcaa atgcttggtg agaatgagaa gaagctgagc gagattgtcg
     2521 aacggctcag aggacgagtg gaatggggtg taaatatcta ttgcaatcgc caaacgttaa
     2581 tggacaacat cacgaactta agtcctcgtt tgcgtcagat gcgagaagaa gcgaaagcgg
     2641 cttctcccgg gcaggcgtat ctactccaga aaaagatc
//
LOCUS       DATCGC010000148         1301 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_401371, whole genome shotgun sequence.
ACCESSION   DATCGC010000148 DATCGC010000000
VERSION     DATCGC010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1301)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1301)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1301
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_401371"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(206..514)
                     /locus_tag="VIJ87_01460"
     CDS             complement(206..514)
                     /locus_tag="VIJ87_01460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443144.1"
                     /translation="MTPSITSPITEHSNSIVNVRNSFLPDVTPHKHLVSSVRTDDDWE
                     ILIYTQGAVFEACFFRWAEHHEHAVGSPVEALNRYVEQRISILRSRQLKTEGWREETN
                     "
     gene            complement(520..>1301)
                     /locus_tag="VIJ87_01465"
     CDS             complement(520..>1301)
                     /locus_tag="VIJ87_01465"
                     /inference="COORDINATES: protein motif:HMM:NF015722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="formylglycine-generating enzyme family protein"
                     /protein_id="HEY5443145.1"
                     /translation="FSRFVEETGYVTSAERVPKTEDYPGARPELLIPASVVFHKPAFK
                     VDLRNHYFWWSYVPNACWRRPKGPGSSLKGLSKHPVVHIAYEDAEAYASWAGKQLPTE
                     AEWEFAARGGLEGAEFSWGSEFTPEGKYMANTWQGEFPSDNTTDDGFDWTAPVGSFPA
                     NGYGLFDTIGNVWEWTTDWYQEHGKITDTCCGNVNPRGGELEQSFDPSTPQIRIPRKV
                     MKGGSFLCAPNYCRRYRPAARMAQPVDTSTCHLGFRCIIKD"
BASE COUNT          319 a          344 c          307 g          331 t
ORIGIN      
        1 cgaaactgag ttgggtttct tcggctttga acaaaaactt caatatccca acccacggca
       61 gagaatgtgt caaactaaac tactatcagt tctgttcgtg tgatttcgtg gatgtcttaa
      121 ccctgagatc aaccgatcca caaaatcaca ctaaccaaaa ctagaaaagc cccaagcaaa
      181 ttcgagtttt gaggattgtt caagtctaat tcgtctcctc gcgccacccc tcagtcttta
      241 attgcctgga tctaagaatc gagattctct gttcgacata gcgattgagt gcttcaactg
      301 gagaaccgac agcatgctcg tgatgttcgg cccaccgaaa gaaacacgct tcaaagactg
      361 ctccctgtgt gtaaatgaga atctcccagt cgtcatcggt tcgcactgac gacaccaggt
      421 gcttgtgagg agtaacgtcg ggcaggaacg agttccgtac gttcacgatt gagttggaat
      481 gttccgtaat tggggatgtg atgcttgggg tcatgattct tagtccttga tgatgcagcg
      541 aaaacccaaa tggcaagtag atgtgtcgac tggctgtgcc attcgggcag ccggtcgata
      601 tcgccgacag taatttggcg cacacagaaa cgagccgccc ttcataacct tgcgtgggat
      661 tcgaatctgc ggggtgctcg gatcgaagct ctgctcaagt tctcctccgc ggggattgac
      721 attgccgcag caggtatctg ttatctttcc atgttcctga taccaatcgg tcgtccactc
      781 ccaaacatta ccgatcgtgt cgaagagacc gtatccattt gcaggaaacg atccgactgg
      841 cgctgtccaa tcaaatccgt catccgttgt gttatccgaa ggaaactcac cctgccaggt
      901 gtttgccatg tactttcctt caggagtgaa ttcggagccc caactaaact cagctccttc
      961 caaccctcca cgggcggcaa actcccactc cgcttcggtt ggcaactgct ttcccgccca
     1021 tgacgcatac gcttccgcat cttcgtaggc gatatgaaca actggatgtt tggatagtcc
     1081 cttcagtgaa gaacctggac ctttaggtcg acgccagcat gcgtttggaa cgtagctcca
     1141 ccagaagtag tgattcctca gatcaacttt gaatgcaggt ttgtggaaga cgactgaagc
     1201 cggaatgagt aactcaggcc tcgcaccagg gtaatcttct gtctttggca cgcgttcagc
     1261 tgaagtaacg tatcccgtct cttctacgaa gcgactaaac t
//
LOCUS       DATCGC010000149         1035 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_134938, whole genome shotgun sequence.
ACCESSION   DATCGC010000149 DATCGC010000000
VERSION     DATCGC010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1035
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_134938"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..465
                     /locus_tag="VIJ87_01470"
     CDS             <1..465
                     /locus_tag="VIJ87_01470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443146.1"
                     /translation="TPNDPELLKNMAELRSRMQDMPGATDLYRAAVRHNACLLSASLG
                     LGAVLQAQGRETEATEVLRRAAACPSSSSYMAYQVGLALEQQGLKRDALQIWEDVLKQ
                     THNAPVNEQAIRNTIQQRAAQLRVQLTAQNPGVNAVPISSGIQSSVLPSEAH"
     gene            687..>1035
                     /locus_tag="VIJ87_01475"
     CDS             687..>1035
                     /locus_tag="VIJ87_01475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443147.1"
                     /translation="MSSLRDFGAVLCDLDGVITKTAALHAAAWKRLFDEYLMKLAART
                     GSPWTPFRLIEDYSLYVDGKLRQDGVKGFLESRGLALPLGSPDDLADKDTVIGLASKK
                     DEYFDTALREGGVI"
BASE COUNT          245 a          275 c          291 g          224 t
ORIGIN      
        1 actccgaacg atcccgaact gttgaaaaat atggctgaac tcaggtctcg catgcaagac
       61 atgccaggtg caacggacct gtaccgagca gccgttcgcc acaacgcctg tttgctgagt
      121 gcgtctttgg ggctgggcgc agttctacag gcacaagggc gggagactga agcaacggag
      181 gtcctgagac gtgcggcggc ctgtccctca tcctcgtcct atatggccta tcaagtaggc
      241 ctcgcgctgg agcaacaggg attgaaacgc gatgcgcttc agatatggga agatgttctc
      301 aagcaaaccc ataatgcccc cgtcaacgag caggcgattc gcaatacgat tcaacaacga
      361 gccgcccaac ttcgagtgca actcacggcg cagaaccctg gggtcaacgc cgtaccaatt
      421 tcctcgggca tccaatcctc tgtgctgccc agtgaggccc attaacagca cacttccaca
      481 acgtggattg gggtctccaa gcatttccat taacagaaga cagaagccag acgttccctg
      541 atccaggcct gggtagctcg tatcacctag gaaggcgcct gattcctggt tgaggatact
      601 gggctattcc ctagcattga gccatcgcag gccggagtag acttcatctg cctctgtgat
      661 tgcggaccaa catctgagag actcgcatga gcagtctgag agattttgga gcggtcttat
      721 gtgacttgga tggagtcatc acgaaaactg ccgcgttaca tgctgcagcc tggaagcgat
      781 tatttgatga atatctgatg aaactggcgg cccgcacggg atctccctgg acaccatttc
      841 gtcttataga ggattattcg ttgtatgtcg atggcaaatt gcgacaggac ggcgtgaagg
      901 gatttctcga gtcgcggggc ctggctcttc cgttggggtc accagacgat ctcgcggaca
      961 aggacacggt tattggattg gccagcaaga aggacgaata ctttgacaca gccttacggg
     1021 agggcggcgt aatcg
//
LOCUS       DATCGC010000150         1143 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_368064, whole genome shotgun sequence.
ACCESSION   DATCGC010000150 DATCGC010000000
VERSION     DATCGC010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1143
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_368064"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..403)
                     /locus_tag="VIJ87_01480"
     CDS             complement(<1..403)
                     /locus_tag="VIJ87_01480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443148.1"
                     /translation="MTNKIDPQIEFPKVEKMLCSLAWKVAQACPVTFEESRSEAYLAF
                     MLACQTYDSRRGSKFSSWCYFKVWTSLRSWITKRTRDPLICTEMNDELTGFAPEQRSE
                     IMDMIGGLSEDAQEIISLLLETPAEILEVGRI"
     gene            490..>1143
                     /locus_tag="VIJ87_01485"
     CDS             490..>1143
                     /locus_tag="VIJ87_01485"
                     /inference="COORDINATES: protein motif:HMM:NF024867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006302 - double-strand break repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY5443149.1"
                     /translation="MKLESIKLNNFQVHKDLEVKFSPSITTIKGKTDAGKSAVLRALR
                     WVCLNDTAGVDFIKEGTKRAIVTLTVVHEPAPLVRLEEVIVRSKNVDGATNTYALDGK
                     EFKAFGQGVPPDIAKTLALNEINFQGQHDAPFWFAETAGEVSRKLNAVIDLSIIDTTL
                     ANIGAEVRRSQERKSLCEERLKEAKTQLEELAPQRERIEEFHNVKVKQTTLKAVAEDY
                     "
BASE COUNT          298 a          282 c          295 g          268 t
ORIGIN      
        1 caatccgccc cacttccaga atctccgccg gggtctccag caggagactg attatctctt
       61 gagcgtcttc cgacaagcca ccaatcatat ccataatctc gctacgttgc tccggcgcga
      121 atccagtcaa ctcgtcgttc atctccgtgc agattagcgg gtctctcgtc cgcttcgtta
      181 tccagctgcg caagctcgtc cagaccttaa agtagcacca ggaagagaac ttagaaccgc
      241 ggcggctatc gtaagtttga caagcgagca tgaaggccag ataagcctcg ctccgcgact
      301 cttcgaaagt tactggacaa gcttgcgcga ctttccacgc cagactgcag agcatttttt
      361 ccactttggg aaattcaatt tgcgggtcga ttttatttgt catttgtcgt tggttagaaa
      421 gtatatcttt cttatataga cgtccagttt tattttgccc aagttttgag acgtagagat
      481 aatacgcacg tgaaactaga gtcgattaaa ctaaacaatt tccaagtgca caaagacttg
      541 gaagtaaagt tttctccgtc catcactaca attaagggca agactgacgc cggcaagagt
      601 gcagtcctgc gggcgttgcg ttgggtctgc ttaaatgaca cggcaggggt ggacttcatt
      661 aaggagggga ccaaacgggc tatcgttacg ctgactgtcg ttcacgagcc ggctccgtta
      721 gtccggttgg aagaagtgat agtccgcagc aagaacgtcg acggagcgac taatacgtat
      781 gcactggacg ggaaggaatt caaagcgttc gggcaaggcg tccctccgga catcgccaaa
      841 accctagctc taaacgaaat caatttccag gggcagcacg acgctccgtt ctggtttgct
      901 gagaccgctg gagaagtatc gcgcaagctg aacgcggtaa ttgacttgtc gattatcgat
      961 acgacgctgg ctaatatcgg agctgaagtc cggcggtcgc aagagcggaa gtctttgtgc
     1021 gaagagcgat tgaaagaagc gaagacgcaa ctggaagagc tcgccccgca gcgggaacgg
     1081 attgaggaat ttcacaatgt taaagtcaaa caaactacgc ttaaagccgt tgctgaagat
     1141 tac
//
LOCUS       DATCGC010000151         1377 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_101792, whole genome shotgun sequence.
ACCESSION   DATCGC010000151 DATCGC010000000
VERSION     DATCGC010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1377)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1377)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1377
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101792"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..198)
                     /locus_tag="VIJ87_01490"
     CDS             complement(<1..198)
                     /locus_tag="VIJ87_01490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443150.1"
                     /translation="MFEQLFCVATRAVGDLGAGEHARQLFDTTTPVESCGDHLRSILD
                     DFLLHGEMAIGEPGDLWLVSDA"
     gene            294..1220
                     /locus_tag="VIJ87_01495"
     CDS             294..1220
                     /locus_tag="VIJ87_01495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443151.1"
                     /translation="MSQPSENESPTVFLRVYSKPDGKTFLLFESANQEVEINAPITRE
                     NIEEARRRLIVQTRNAFELEREQLEGNDEASATPQQQANRQIRNALEPRPKSYLEKLK
                     QGSLSVHQALIALMAIWVMVAVFYKGVELSQEHLPEKLHFVVLALYLFGIALCIYLMA
                     TDKKRRKENDRIRYWFGPRGMLVLPCLTLVSAAAVFASITLSLHRRGLVALQECAGRP
                     VSSGSLTDFYMWHFMKLVPLVKINELLKLNEPLCYSQKRIGLFILIFQTLVVIPSINT
                     VLYYWKNRHILSAPPYDYRYEAGWEPVDKKTD"
BASE COUNT          354 a          366 c          341 g          316 t
ORIGIN      
        1 tgcgtcactc accaaccaca gatcgccagg ttcgccgata gccatctcac cgtgcaaaag
       61 gaagtcatca agaatcgaac gcaggtgatc gccacaagac tcgaccggag tggtcgtatc
      121 gaagagctgg cgcgcatgct caccggcgcc gagatcaccg acagcgcgcg tcgccacgca
      181 aaagagttgc tcaaacattg aatcgaagca gctggtaatc tcgaatcagc aacgaatcct
      241 cgctcgctta catccagctt caagcctgaa gcacttaaga caggagttcg cccatgtccc
      301 aaccttccga aaacgaatct cccacagttt tcttgcgcgt gtactcaaag ccggacggaa
      361 agacgtttct tctctttgaa tccgcaaatc aggaagtcga gatcaatgct ccaataacca
      421 gggagaatat cgaggaagcc aggcgtcggc tgattgtgca aacgagaaat gcatttgaac
      481 tcgaaaggga acagttggag ggaaatgatg aagcctccgc cacaccgcaa caacaagcaa
      541 atcgacagat cagaaatgct ctagagccaa ggcccaagtc ttatcttgaa aagctcaagc
      601 agggttcctt atcagtgcac caggcgttaa tcgccctgat ggccatttgg gtcatggttg
      661 ctgtgttcta caaaggagtg gaactatcgc aggaacacct tccggaaaaa ctgcattttg
      721 tagtcctggc actctacctc ttcggcatcg cgctttgtat ttacttaatg gcgaccgata
      781 aaaagcgtcg caaggaaaat gatcggatcc gatattggtt tggtccacgc ggcatgctgg
      841 tgctgccgtg tttgactctc gtcagtgcag cagcggtgtt tgcctcgatc acgctctcat
      901 tgcaccggcg cggactcgtg gccctccagg agtgcgccgg ccgtcctgta tcgtcgggct
      961 ctctaacgga tttctacatg tggcatttta tgaaactcgt gccgctggta aagatcaacg
     1021 aattgctaaa actgaatgaa ccgctctgct attcgcaaaa gagaatcggt ttattcattc
     1081 tgatcttcca gactttggta gtgattccca gcatcaatac ggtgctctac tactggaaga
     1141 accgtcatat tctgtcggcc ccgccttatg attatcgcta cgaggcaggc tgggaacccg
     1201 tcgacaagaa gactgattaa ggcaaggttc caataccacc aacggcagtt ggtggatggt
     1261 tcaagtccaa cctacagggc ctgactcact gaatctaatc gctttgcgcg gagcaaccgc
     1321 tgactggatc gccttcaact ttgcgataac gggattttcc tagctgttag gttggcc
//
LOCUS       DATCGC010000152         1547 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_268316, whole genome shotgun sequence.
ACCESSION   DATCGC010000152 DATCGC010000000
VERSION     DATCGC010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1547)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1547)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1547
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_268316"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            150..>1547
                     /locus_tag="VIJ87_01500"
     CDS             150..>1547
                     /locus_tag="VIJ87_01500"
                     /inference="COORDINATES: protein motif:HMM:NF013736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEY5443152.1"
                     /translation="MAHLKITDASGRQWQFNFVPQAICTIGRAPDNAVVLDDPRASRY
                     HAHIKNNDNGSFTMVDGAVINGQLRRSANKVFINGDAQFEQQLKNGDRVTIGASTLRF
                     EQPPEERTTDVRYDDKPLGHTQLLISANDVMSTVLRSKDEISAAMPQRDKMLETLQRK
                     ANILTALYEMSKTLGSVFDLNAIFDKATDVIFRSTPADRVVALLAESGHSGDLEDVKL
                     TPIAMRARDNKLEAHARRLSIGRTITRKVMKDRVALLSQDAASDEQFAGVDSIVSQGV
                     RSTICAPLVADTRVHGALYADRLDPFAAFKPDDLELISAVAAQTAIAVENARAHERLA
                     REEVARANYSRFLPEYVVKQMLENPDSFKLGGVNQTITILFADIRGFTRISEHAPPEK
                     IVGLLNRYFSAMTDIIFAHGGTLDKYLGDGLMALFGAPTATPEDASNALNAAVAMQRR
                     VLSINQELREEGFPEI"
BASE COUNT          388 a          406 c          411 g          342 t
ORIGIN      
        1 ccgagaggta aagaccaaag acctgagtcc gagaccgctt tctcaaatgg caactgaaaa
       61 atgtcaaatg agatatgagc aatgattttt tcgttctcac atgatccagt tgtcagtctc
      121 aagcgcctac tgttaggatc aattccagca tggctcacct gaaaatcacc gatgcaagtg
      181 gccgtcaatg gcagttcaat tttgttcctc aagccatttg cacgatcggc cgcgccccag
      241 ataacgcagt ggtcctggat gacccgcggg cttcgcggta tcacgcgcac attaagaata
      301 acgacaacgg ttcattcacg atggtcgacg gagccgtgat taacggccag ttgcgcagga
      361 gtgcaaacaa ggtcttcatc aacggcgatg cccagtttga gcagcaactg aagaacggcg
      421 atcgcgtaac catcggagcc agtacgctcc gtttcgaaca gcctcctgag gaacgtacta
      481 ctgacgttcg ttacgacgac aagccactcg gtcacactca actactaatc tcagcaaacg
      541 acgtgatgag caccgtcctt cgctcaaagg acgaaatctc tgctgcgatg ccgcaacggg
      601 acaagatgct cgaaacgttg cagcgcaaag caaacattct gaccgcgctt tacgagatga
      661 gtaagacgct tgggtcggtg tttgacctga acgccatttt tgataaagcc accgacgtca
      721 tttttagatc gacacctgct gatcgcgtgg ttgcgttgct tgccgaatca ggtcacagcg
      781 gcgacctcga agacgtaaag ctgacaccca tagcaatgcg agcccgcgac aacaaactcg
      841 aagctcacgc gcgaaggttg tcaattggta gaacaatcac acgcaaagta atgaaggatc
      901 gagttgccct gctttcgcag gacgctgcgt cagacgaaca gttcgctggc gtggattcaa
      961 tcgtatcgca gggtgtgcgt tcgacaattt gtgcgccgct ggtagcggat acgcgggtac
     1021 acggtgcgct ctatgcggat cgactcgacc cgtttgctgc gttcaagccg gacgacctcg
     1081 aactgatcag cgctgtcgct gcacagactg ctattgcggt cgaaaatgca cgggcccacg
     1141 aacgattggc gcgcgaagaa gtcgcgcggg ctaactacag tcgattcctt cctgagtacg
     1201 tggtgaagca gatgctggag aatccggatt cattcaaact aggtggagtg aatcaaacga
     1261 tcacgatcct gtttgctgac attcgtggat ttacacgcat ttccgaacac gcaccacctg
     1321 agaaaattgt cggcttgctt aatcgatact tctcggcgat gacggacatt atttttgcgc
     1381 atggcggtac gcttgataag tatcttggtg acggattgat ggccctgttt ggcgctccaa
     1441 ccgcaactcc cgaagacgcg tcgaatgcgc taaatgccgc ggtcgctatg cagcgtcgag
     1501 ttctgagtat caatcaggaa ctgcgcgagg aagggtttcc ggagatc
//
LOCUS       DATCGC010000153         2334 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_467881, whole genome shotgun sequence.
ACCESSION   DATCGC010000153 DATCGC010000000
VERSION     DATCGC010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2334)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2334)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2334
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_467881"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..252
                     /locus_tag="VIJ87_01505"
     CDS             <1..252
                     /locus_tag="VIJ87_01505"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5443153.1"
                     /translation="ITFYLLGVAHSRASNFPKAIAALETAAKKSPDDVNVYRELGYAY
                     EVTKQYPKALAAYQRGAAVAPGDTDFKESIERVKPFAKP"
     gene            310..570
                     /locus_tag="VIJ87_01510"
     CDS             310..570
                     /locus_tag="VIJ87_01510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443154.1"
                     /translation="MLTPQPSSIAATARAFATYSLVPYLGIVFCPGAVLVGGFGIVRH
                     RAGGSDRKVCYLSVLVGVLVLVIQLLLWWILYKVPIWVKGAP"
     gene            673..1224
                     /locus_tag="VIJ87_01515"
     CDS             673..1224
                     /locus_tag="VIJ87_01515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443155.1"
                     /translation="MKFIGSLLLLGALATGAYAQRPREMEPEGSKITSTIPVPKTVNA
                     KYEGGVFGYTKTMEGTLTLDDENSQLLFKDKKTPKQIHIPYEAVTSAFADTQKRQPAA
                     ATIAGSVPVIFAMPAKFIKTKVRYLTLQYSDPDSNQNGVTSFRLENKEVLNSVLAALA
                     VKTGMTQRGDIYVKKKEVGKLQP"
     gene            complement(1318..1737)
                     /locus_tag="VIJ87_01520"
     CDS             complement(1318..1737)
                     /locus_tag="VIJ87_01520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443156.1"
                     /translation="MIQLGWRVFFFASITMLTILISASHACAQGGGKAEPLRIEFKRG
                     TNSTTINDKVKNQEEAEYVLTAKKGQRLIIKLTSLPYRSSVFDLKAPGDTDLGLEYDA
                     NYNFNKILPVTGDYLITVVRPTSSPGRSSYKLVITIR"
     gene            complement(1803..>2334)
                     /locus_tag="VIJ87_01525"
     CDS             complement(1803..>2334)
                     /locus_tag="VIJ87_01525"
                     /inference="COORDINATES: protein motif:HMM:NF012956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HEY5443157.1"
                     /translation="LYYSSVGRGASLLLNLPIDRRGKIHDNDVGSLLGFRKLLDDTFT
                     NDLTRGARVVVNDPTGRDARFTPANILDGSRSTYWLASDGATQQEITIDFGHATTFNV
                     IRLREFLPLGQRVEAFALDEWRENGWRQFSSGTSIGNCRIVKSERITTTKVRLRITAA
                     AAVPAIAEVGIFVEPK"
BASE COUNT          593 a          574 c          573 g          594 t
ORIGIN      
        1 attacttttt atttgcttgg agttgcgcat tcgcgggctt cgaattttcc gaaggcgatt
       61 gctgcgttgg aaacagccgc aaaaaaatct ccagacgatg tgaatgttta ccgggaactc
      121 ggttacgcat atgaagtgac caaacaatac ccaaaagcgc tagctgccta tcagcgcggc
      181 gcggcagtcg ctccgggtga tacagatttc aaggagtcga ttgaaagagt taagcccttt
      241 gcgaagccat aggactaagc ttggtgctta gtacttggtc tttgttagag tattcgatta
      301 gataaagcag tgctcactcc ccaaccaagc agcattgcag caacggcgcg agcttttgca
      361 acctattcct tagttcccta tctcggtata gtgttttgtc ctggagcggt gttggttgga
      421 ggcttcggta tcgttcgtca tcgggccggc ggaagcgata gaaaggtttg ttaccttagc
      481 gtcctggtgg gagttctcgt tctggttatt cagttgttgc tctggtggat tctttacaag
      541 gtgccgattt gggtaaaggg tgcgccttaa gaatcttctt tagttaagac aacctcaaat
      601 cggtttagta gcgtctgtta gttatccggc tcgcctcaaa tattcgtttt ttagcatcaa
      661 ggagatttcg aaatgaaatt tattgggagt ttgctcctcc tgggagcgct agcgacgggt
      721 gcctatgcac aacgtccacg ggaaatggaa cccgaagggt caaagataac ttcaacgatt
      781 ccagtcccaa aaactgtcaa cgcaaaatat gaaggcggag tgtttggtta cacgaagaca
      841 atggaaggca cgctcacgct cgacgacgaa aacagtcaac tgcttttcaa agacaaaaag
      901 acaccaaagc agatccacat tccttacgaa gctgttacgt cggcgtttgc tgatactcag
      961 aaacgacaac ccgcggcagc gaccatcgcg ggcagtgtgc ccgtaatttt tgcaatgcct
     1021 gcaaagttca tcaaaacaaa agttcgctat ttgaccttgc aatatagcga tcctgattcg
     1081 aaccaaaacg gcgtcaccag tttcaggctg gagaacaagg aagtgctcaa ctcagtactg
     1141 gctgctctcg cggtaaagac cgggatgacg caacgtggcg acatctacgt gaagaaaaag
     1201 gaagtcggca aactacagcc ataggtgtgg cacagactta agtctgtgaa gatccaattc
     1261 gcgaatctca acagaagagg tgggccactg ttcacctctt ttgcttttta gtaactctca
     1321 cctaatcgtt atcaccaact tgtagcttga tcttcctggc gagctagttg gtcgaacaac
     1381 agtgatgagg taatcacccg ttacgggaag aatcttgttg aagttgtagt tagcatcgta
     1441 ctcaagaccc agatcagtgt cgcctggcgc ttttagatca aagaccgaag atcgatacgg
     1501 caacgaggtt agcttgatga tgagtcgctg ccctttcttc gcggtcaaaa cgtactccgc
     1561 ttcttcctgg ttcttaacct tgtcgttgat cgtcgtgctg tttgtgccgc gcttgaattc
     1621 aatgcggagt ggctcagctt taccgccgcc ttgagcgcag gcgtgagacg cggaaatcaa
     1681 gatcgtgagc atcgtaatgg acgcgaagaa aaagactctc cacccaagtt ggatcacgtt
     1741 ggttctcctt caaatagttt tccctttact caaaagagca actgggacgt cctcgctact
     1801 gttcacttcg gctcaacaaa tatacccact tctgcaatcg ccggtaccgc agcagcggca
     1861 gtgattctca accgtacctt agttgtcgta attcgctcag acttcacgat tcgacaattc
     1921 ccgatgctcg ttccagaact aaactgacgc catccattct cccgccattc atcgagggca
     1981 aaagcctcta cacgttggcc caacggcaaa aactcgcgca accgaatcac attgaaagtt
     2041 gtcgcgtgtc cgaaatcgat cgttatttcc tgctgggtag caccatcgct agcgagccaa
     2101 taagtcgaac gtgaaccatc cagaatgttc gctggcgtaa atcgcgcgtc tcttccggtt
     2161 ggatcgttga cgacaacccg cgcgccgcga gtaaggtcgt tggtgaatgt gtcgtccaac
     2221 aatttccgga atcccaatag cgatcccacg tcgttgtcat gaatctttcc gcgccggtca
     2281 atcggaagat tgagtagcaa tgaagctcca cgccctactg aggagtagta gaga
//
LOCUS       DATCGC010000154         1211 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_101826, whole genome shotgun sequence.
ACCESSION   DATCGC010000154 DATCGC010000000
VERSION     DATCGC010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1211)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1211)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1211
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101826"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..214
                     /locus_tag="VIJ87_01530"
     CDS             <1..214
                     /locus_tag="VIJ87_01530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443158.1"
                     /translation="IRNLQMEKERFQIAYVGGVFRAAGEMILKPLRVEVAKAAPRAYF
                     EPPHFSPAVAAARMARERINHVALAV"
     gene            229..1149
                     /gene="murQ"
                     /locus_tag="VIJ87_01535"
     CDS             229..1149
                     /gene="murQ"
                     /locus_tag="VIJ87_01535"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: protein motif:HMM:NF003915.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016835 - carbon-oxygen lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009254 - peptidoglycan turnover [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HEY5443159.1"
                     /translation="MNTDNGDSLPITEQENPRSQNLSSLSSVEIVALMNEEDALVATA
                     VQRVLKDVAIAVDEIVVRLSAGGRLFYIGTGTSGRLGVLDASECPPTFGVSTELVQGV
                     IAGGFDACYRAVEASEDDAEAGSGDLEKRGFTGGDVLVGIAASGRTPYTIGAISYARR
                     LGAFTVGLTCVPDSPITATAELCIVPVVGPEVVTGSSRLKAGTAQKMVLNMLSTATMV
                     RLGYVSGNRMSNMQAKNIKLRERALRILMKETGLGTVEAEDALEASGTNLSVALVMVK
                     GSSSREKATEVLRQTSGKVEDAVALLKKQT"
BASE COUNT          280 a          278 c          362 g          291 t
ORIGIN      
        1 aattcgaaac ctgcagatgg agaaggaacg ttttcaaatt gcctatgtgg gtggagtgtt
       61 tcgggcagcc ggcgagatga ttctcaaacc tctccgtgtt gaagtcgcca aggctgctcc
      121 tcgtgcatat tttgagccac cacatttctc tcccgccgtg gctgccgcta gaatggcccg
      181 cgaacgcatc aaccacgttg ctcttgcggt ctaagcctgg cgattcagat gaacactgac
      241 aacggcgatt cattaccaat taccgaacaa gagaatccgc gctcacagaa tctcagctca
      301 ctttcctcag ttgaaatcgt tgctttgatg aacgaggaag atgcgttggt agcaactgct
      361 gtccaacgtg ttcttaaaga cgtcgccata gctgttgatg agatagttgt gagactgagt
      421 gcaggaggtc gacttttcta tattggcacc ggaacatctg gtcgtctcgg agtgctcgat
      481 gcgtctgagt gtccaccgac attcggggtc tcgactgaat tagtgcaggg tgtgattgct
      541 ggtgggttcg acgcttgtta ccgcgcggtt gaagcgtctg aagacgatgc tgaggcaggt
      601 tcgggcgatc ttgagaagcg ggggttcacc gggggagatg tgctggttgg aattgcagcg
      661 tcaggtagaa cgccgtacac cattggcgcg atctcttacg cacgccgact gggcgccttt
      721 actgttgggt taacctgtgt acctgattcg ccgattaccg cgacggccga actttgtatc
      781 gttccagtgg ttggtccgga ggtggttact ggatccagca gattgaaggc cgggacagcc
      841 cagaagatgg tcctcaacat gctatcgacg gcgacgatgg ttcgactcgg ttacgttagc
      901 ggcaatcgca tgtcgaacat gcaggctaag aacatcaagt tgcgtgaacg agcgttgcga
      961 attttgatga aggaaactgg gctcggaaca gttgaggcgg aggacgcgct ggaagcatct
     1021 ggaacgaatc tcagtgttgc attagtgatg gttaagggca gcagttctcg ggaaaaagct
     1081 accgaggtgc tgagacagac gagcggcaaa gttgaagacg ctgttgcatt gttaaagaaa
     1141 cagacttaga gacctgtcac agaagaacag gttgggaagg gtggtttacc cccgcctgtc
     1201 ccatttcaaa t
//
LOCUS       DATCGC010000155         1961 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_201764, whole genome shotgun sequence.
ACCESSION   DATCGC010000155 DATCGC010000000
VERSION     DATCGC010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1961)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1961)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1961
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201764"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..240
                     /locus_tag="VIJ87_01540"
     CDS             <1..240
                     /locus_tag="VIJ87_01540"
                     /inference="COORDINATES: protein motif:HMM:NF013213.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEY5443160.1"
                     /translation="VTFKKAEELREVARVVPTDRLLIETDCPFLAPIPYRGRRNEPAH
                     VVEVARCLAQVLGLHLNEIAQTTSHNFSECFHLLA"
     gene            362..859
                     /locus_tag="VIJ87_01545"
     CDS             362..859
                     /locus_tag="VIJ87_01545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011551594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HEY5443161.1"
                     /translation="MAQQNSFDIVSQIDLAEVNNALNQTVKEVRQRFDFKGSHADVVL
                     EKHELVLSAEDETKLKNMNDILQQKLVRRGVPLKALDYGKVEPAAGSTVRQRVAIQEG
                     IPQEKAKEVVRFIKDSKAKVQASIQGDVVRVTGKDRDTLQDIIAKLKEKDFGIHMQFT
                     NYRSN"
     gene            881..1903
                     /locus_tag="VIJ87_01550"
     CDS             881..1903
                     /locus_tag="VIJ87_01550"
                     /inference="COORDINATES: protein motif:HMM:NF012568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEY5443162.1"
                     /translation="MTLSGHTLTLEEEAKISARRIFSLIANELQQVEIEFERQARSNV
                     QVIDYLGEYLRASGGKRVRPALTILSNYAVGGDGARYNSIRMATVMEFLHTATLVHDD
                     IIDHADTRRNRPTVNALYGNETAVLMGDWLYMSAFETSLAERSLPVLDILTRVTRKMT
                     EGELLQLTLLGKAEITEEQYLDVLERKTAFLFSACCEIGGILGGATDTQQTALRDYGL
                     SLGTAFQLIDDLLDFTSSDDVLGKAAGADLLGGKVTLPLIYLIESDPSTADLVRSVLR
                     AGDYGPGSRESLSEAISRTGALARARRVADSYAEKAQAALDCLPESAYADSLRTIPSY
                     VLDRDR"
BASE COUNT          507 a          507 c          506 g          441 t
ORIGIN      
        1 gtcaccttca agaaagctga agaactccgg gaagtcgcga gagttgtacc taccgaccgc
       61 ttactcattg agacggattg tccgtttctt gcgccgatcc cctaccgcgg tcggagaaat
      121 gagccggcac atgtagttga agtagcacgt tgcctcgcgc aagtgctcgg acttcacctt
      181 aacgagattg ctcaaactac ctcacacaat ttttctgaat gcttccacct ccttgcttag
      241 ttaaactcgt cgagtgcttt gcgaaaccaa gtagtatccg cccaagcgac aagtttcaca
      301 tgctgacgca atgatgttat tctgcccgta aatcaacttc taaataaaaa cctaatcaca
      361 tatggcccag cagaattcat tcgacatcgt ttcccaaatt gatcttgccg aagttaacaa
      421 cgcgcttaac caaactgtta aggaagtccg ccagaggttt gacttcaagg gaagtcacgc
      481 cgatgtagtt ttagaaaagc atgagcttgt tttgtcagcc gaagatgaaa cgaaactcaa
      541 gaacatgaac gatatcctcc agcagaaact ggtgcggcgc ggggttcctt tgaaggcgtt
      601 ggactatggc aaggtcgagc ctgcggccgg cagcacggtg cgacagcgag ttgcgattca
      661 agagggcatt ccgcaagaga aagccaagga agttgtgagg ttcatcaaag acagcaaggc
      721 gaaagtccag gcctcgattc agggtgacgt ggttcgtgta actggaaagg atcgagacac
      781 gctccaggac atcatcgcca aactgaaaga aaaagacttc gggattcaca tgcagttcac
      841 aaactatcga tcaaactgaa gcggagcggc gaatcttaga atgactttgt caggtcacac
      901 attgacactg gaagaagaag cgaagatatc ggcacgccga atctttagtt tgatcgcaaa
      961 cgagcttcag caggttgaga tcgagtttga acggcaagcg cgctcgaatg ttcaggtaat
     1021 cgactacctc ggtgagtatc tacgcgcatc cggaggcaaa cgagtacgac ccgccctgac
     1081 gatcctttcc aactacgcgg ttggcggcga cggtgcgcgg tacaactcca tccgcatggc
     1141 cactgtgatg gaatttcttc acacagccac gctcgtgcac gacgacataa tcgaccacgc
     1201 cgacacgcgt cgaaatcgcc ccacggttaa cgccctctac ggaaacgaaa ctgctgtact
     1261 gatgggcgat tggctgtaca tgtcggcttt tgaaacgagc ttggcagagc gctcgctacc
     1321 tgttctcgac atactgactc gtgtcactcg gaagatgacc gaaggtgaat tgcttcaatt
     1381 gaccttgctt gggaaagctg agattactga agagcaatac ctcgacgtgt tggaacgaaa
     1441 gacggctttc ttgtttagtg cttgttgtga gattggtgga attctgggcg gtgcaacaga
     1501 cactcaacaa acggcgttgc gtgattatgg tttaagcctc gggacagcgt tccaactcat
     1561 tgacgacctg cttgacttca cctccagcga cgacgttctc ggaaaagccg cgggagccga
     1621 cctactggga ggaaaggtta cgctaccctt gatttactta atcgagtcag acccgtcgac
     1681 tgcagattta gtgcgatccg tgctccgcgc tggcgactac ggtccaggct caagggagtc
     1741 gctttcagaa gcaatttcaa gaactggagc acttgctcgg gctcggagag tcgctgacag
     1801 ctacgctgag aaggcccagg ccgcgctcga ctgtctgcct gagtctgcct acgcagattc
     1861 acttcggaca attccttcct acgtgttgga ccgcgaccgc tgatcgaccg ccaaagctca
     1921 agactattgt gcaaatcggc aatcccctct agaattcgca t
//
LOCUS       DATCGC010000156         1605 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_268397, whole genome shotgun sequence.
ACCESSION   DATCGC010000156 DATCGC010000000
VERSION     DATCGC010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1605)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1605)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1605
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_268397"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            291..>1605
                     /locus_tag="VIJ87_01555"
     CDS             291..>1605
                     /locus_tag="VIJ87_01555"
                     /inference="COORDINATES: protein motif:HMM:NF021391.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2092 domain-containing protein"
                     /protein_id="HEY5443163.1"
                     /translation="MRTNCFVIFIALLLMASSVSAQETEISRLKTQTITLSRKVSQEG
                     KAYPASWTLVEGNQKRSYSIVYGGLSLGGDSQWLQLTASPNGGMGWLTDLGELHWTEV
                     DQMPALFLKPIPQGITISNFGGETIVLPQGFIVKAVAGHIYAVHIEDDRTEYRAIFRV
                     ESIDSGVECKLSWKRIPSKWALGTAVDPLAKQSKAKENLPKILFSYSGPPAKEILTKV
                     ASVYSSCRSYSDEGVISTAGVGSSEPHFRTTFSRPDTLGFELWQGTKNPWVIWKKGDE
                     IKNWKPDGTVGRSSSFDNALVQMAFNSRGGSLLIPPLLLPSLFRISDAFTLIEDPRVT
                     GEDKVDGLESYRIRGTLSGQQIELWIDKTDYLIRKVVSTATLGNQQLESTIKYKPKLN
                     SDIPSESLTFKPPTGTVSSDPENSMPLKAQPLIPPSVAPRLRSRAF"
BASE COUNT          417 a          412 c          411 g          365 t
ORIGIN      
        1 atcagaatcc aacaagggag acaggcacat tcatcctctt cggatcttac tcgcccgccg
       61 aaagcgacac gatggaacag cttgctcgca ctggcgggga agccacggca tattacgctt
      121 tggcgctttg gagaagtctt caagttgaag agctgcaaaa acaattgaat cgcggctaac
      181 actctcttgc agcggacgcc ccggtgagct gacgttgccc ggtatcatca aatgggtgta
      241 tgaatgggta acaagagtct accggcgcag tttccaaagg aatgaagaaa atgagaacga
      301 actgttttgt cattttcatc gctctactgt tgatggctag cagcgtcagt gcccaggaaa
      361 cggagattag tcgactcaag actcagacaa tcaccctaag tcgaaaagtg tctcaggagg
      421 gtaaagccta tcccgcatcc tggactctgg tggagggcaa ccagaaacgt agctactcga
      481 tcgtgtatgg tggactttca cttggtggag acagtcaatg gttgcagctt accgcgtcgc
      541 ctaacggcgg aatgggctgg ctcacggatc tgggcgaact gcactggaca gaagtggatc
      601 aaatgcccgc cttgtttctt aagcctattc ctcaggggat caccatatcg aattttggag
      661 gagagacaat cgtccttccc caaggcttca tagttaaggc cgtcgctggc catatctatg
      721 cggtgcacat tgaggatgac cgaacagaat accgcgccat ttttcgcgtc gagtcaattg
      781 attcaggtgt cgagtgtaaa ctgagttgga aacgcattcc ctcaaagtgg gcgcttggga
      841 ctgccgtcga cccgctggcc aaacaatcca aagcaaaaga aaacctccca aaaatacttt
      901 tttcctattc agggccgccg gctaaggaaa tactcacaaa ggtagcttca gtctactcca
      961 gctgccgcag ctactccgat gaaggtgtca ttagtacagc aggagttggg tcctcggagc
     1021 cacactttcg cacaacgttt tcccggcccg acacccttgg ctttgagttg tggcagggca
     1081 ccaagaatcc ctgggtcatc tggaaaaaag gagacgagat caagaactgg aagcctgacg
     1141 gtacagttgg cagatcgtcc tcattcgaca acgcgctggt gcaaatggcg ttcaattccc
     1201 gtggcggctc gcttctgatt ccgccgttgc ttcttcccag cctcttccgg ataagtgatg
     1261 cctttacctt gatcgaggat cccagggtga cgggcgaaga taaggtagat ggacttgagt
     1321 catacagaat tagaggtacg ttatcgggac agcaaatcga attgtggatc gataaaacgg
     1381 actatctaat tcgtaaggtt gtcagtacag caactctcgg aaaccaacag cttgaatcaa
     1441 ccatcaagta caagcccaag ctcaattctg atattccgtc tgaaagcctt actttcaagc
     1501 cgccaacagg cacagtcagt tcagacccag aaaactcgat gccgctgaaa gcgcaaccgc
     1561 tgattcctcc ttcagtggct ccgcgtttgc gctcgcgagc attcg
//
LOCUS       DATCGC010000157         1280 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_68567, whole genome shotgun sequence.
ACCESSION   DATCGC010000157 DATCGC010000000
VERSION     DATCGC010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1280)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1280)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1280
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68567"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1172
                     /locus_tag="VIJ87_01560"
     CDS             <1..1172
                     /locus_tag="VIJ87_01560"
                     /EC_number="2.7.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008776 - acetate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006085 - acetyl-CoA biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HEY5443164.1"
                     /translation="SNNADQRLARGNIERIGGEAILSLQAASGEKQLSTAPLRDTRAA
                     VELILRWACSDQGPAQVQSVADIHAVGHRVVHGGEHFKHSVKIDDTVLRAIEDCIELA
                     PLHNPTNIKGIQAAREVFGSGLPQVAVFDTAFHQTLPEHAYLYAIPYQLYRRYRIRRY
                     GFHGTSHRYVAYRYRQLQQLSREETNVITIHLGNGCSIAGIRGGDSQDTSMGLTPLEG
                     LVMGTRSGDIDPAIIDFISVKEGLSSREVETLLNKQSGLLGISGLTNDMRELLAEEKE
                     NNDRRAHLAIEVFCYRVRKYIGAFLAGTGGADAVIFTGGIGENSPEIRARICNGLEWI
                     GLTIEADRNSQAEKGFEGKISTDDSRLAAYVIPTDEELLIARDTVRCVKGVTQRF"
BASE COUNT          298 a          322 c          358 g          302 t
ORIGIN      
        1 tctcgaacaa tgccgaccaa cgacttgcac gcggcaatat tgaacgcatt ggtggcgagg
       61 cgatcctgtc cctccaggca gcctcaggtg aaaagcagtt atcgaccgcc ccgctgcgag
      121 atactcgtgc cgctgttgaa ctgatacttc gttgggcttg ttcggaccag ggaccagccc
      181 aggttcagag cgttgctgat attcatgcag ttggccatcg cgttgtccac ggtggcgagc
      241 acttcaaaca ctccgtaaag atcgacgata ctgtgcttcg cgcaatcgag gactgcatcg
      301 agcttgcgcc tcttcacaat cccactaaca tcaagggcat tcaagcggca cgcgaagtct
      361 ttgggagcgg ccttccccag gtggccgtct tcgacacagc gttccaccaa acattgccgg
      421 agcacgctta tctttacgcg atcccttacc agctttatcg tcgatatcgc atccgccgtt
      481 acggctttca tggtacatcg caccgctacg tcgcttatcg ctataggcag ttacaacagc
      541 tctctcgcga agaaacgaat gtgattacga ttcaccttgg taatggctgc tcaatagccg
      601 gaatacgagg cggtgattct caagacacct cgatgggcct gactccactc gaggggctcg
      661 tgatggggac gcgttcaggt gacatcgatc cggcaatcat cgacttcatc agtgtgaagg
      721 aaggtttgtc gtcgcgtgaa gttgagacgt tattgaacaa gcagtcgggt ctactgggta
      781 tctcggggtt gacgaacgac atgcgcgagt tgttggcgga agagaaagag aacaacgatc
      841 gacgagcgca cttggctatc gaagtgtttt gctatcgcgt tcggaaatac attggtgcgt
      901 ttctcgcggg aacgggtgga gccgacgccg ttattttcac tggtggcatc ggcgagaact
      961 ctccggagat tcgtgcgcga atttgtaatg gcctggaatg gatcggactg acgattgaag
     1021 ccgatcgaaa ttctcaagct gagaaggggt tcgaaggaaa gatcagtact gacgacagcc
     1081 ggttggctgc ctatgtgatt ccaacggatg aagagttgtt aatcgcgcgc gacacagtgc
     1141 ggtgtgtgaa gggcgtaact cagcgatttt gaatgtcgac aattaatgtc cgacgcactg
     1201 taggaacctt taatgtccga cgaactttag tttgtcgttt cgatggctac cgagattctt
     1261 aaagacagcc agcgacaaac
//
LOCUS       DATCGC010000158         1339 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_201865, whole genome shotgun sequence.
ACCESSION   DATCGC010000158 DATCGC010000000
VERSION     DATCGC010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1339)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1339)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1339
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201865"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(75..>1339)
                     /locus_tag="VIJ87_01565"
     CDS             complement(75..>1339)
                     /locus_tag="VIJ87_01565"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CHAT domain-containing protein"
                     /protein_id="HEY5443165.1"
                     /translation="GEDQSYAFLVSSMSLKTFELPKRDEVEKASRRVYDLVTASERVV
                     PNETLEQRNTRLAQADSDYPAAALALSQMLLGPLVTELKSKRLLLVGEGVLQYVPFAA
                     LPEPDTEFRVSSSGFRVQNAKSQNPNSKLETRDSKPLIASHEIINLPSASVLGILREE
                     TKNRPRATKMVAVFADPVFGPQDPRINSIGEKRAVDNSTSEQAGDVKRSAEESGLNGF
                     ARLRFSREEAEQIMQLVPRNSSLEAVDFAANRTAATSADVKNYRIVHFATHGLINSRH
                     ADLSGIVLSLVDREGKPENGFLRLYDIYNMNLSAELVVLSACQTALGKDIKGEGLVGL
                     TRAFMYAGASRIVASLWRTEDRATALLMKRFYQAMLGNGMSPAAALRKAQLSMWQDKR
                     WRHPRNWAAFTIQGEWKGECYDGRTSRG"
BASE COUNT          304 a          374 c          314 g          347 t
ORIGIN      
        1 atcgaaaagg agggttggaa acgcgaccga ttcagattac ggagttttga ttttctgtgt
       61 aatccatcaa taagtcagcc cctcgatgtg cgtccatcgt aacactctcc cttccactca
      121 ccctggattg taaacgctgc ccaattccgc ggatgtctcc acctcttgtc ttgccacatg
      181 ctcagttgcg ctttcctcaa cgcagccgcc ggactcatgc cattacccaa cattgcttga
      241 tagaatcgct tcatcagtaa agccgtcgcg cgatcctctg ttcgccataa gctcgccaca
      301 atccttgacg cccccgcgta catgaaagcg cgagtcaatc cgaccaggcc ttcgcccttg
      361 atatccttgc caagagccgt ttgacacgct gaaaggacca ccagttcagc tgagagattc
      421 atattgtaaa tatcgtagag tctcaagaaa ccgttttctg gtttgccttc ccggtctacc
      481 agcgacagga ctatccctga aagatcagca tgacggctgt ttatcagccc atgcgttgcg
      541 aagtgtacga tgcggtaatt cttaacgtcg gcactcgtcg cggccgttct atttgcagca
      601 aaatcgacgg cttccaaact gctgttccgg gggacgagct gcattatctg ctcagcttcc
      661 tctcgactaa aacgcagtct ggcaaaacca ttgaggcccg attcctcagc cgacctttta
      721 acgtcacctg cttgttccga tgttgaatta tcgacagccc gcttctcacc tatggaatta
      781 attcttggat cttgcggacc aaagaccggg tccgcgaata ccgcgaccat cttcgtcgca
      841 cgtggccgat ttttcgtttc ctctcgtaga attcccagta ccgacgccga aggaagattg
      901 atgatttcgt gactggcgat caagggtttc gagtcacggg tttcgagttt cgagtttggg
      961 ttctgagatt tagcgttttg aactcgaaac ccggaacttg aaactcgaaa ctccgtgtct
     1021 ggttctggca acgccgcaaa gggaacgtat tgcaggacgc cttcgcctac cagtaagagt
     1081 cgtttacttt ttagttcagt caccagcgga cccaataaca tctggctcag tgctaaagct
     1141 gccgcaggat agtcgctgtc agcctgagca agtcgcgtgt ttctctgttc gagtgtctcg
     1201 tttggaacaa cgcgttctga ggcggttact agatcgtaaa cgcggcgaga cgccttttcg
     1261 acctcatcac gcttcggcag ttcaaacgtc ttgagagaca tcgaagaaac gagaaacgcg
     1321 taactctggt cttcgccaa
//
LOCUS       DATCGC010000159         1485 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_135146, whole genome shotgun sequence.
ACCESSION   DATCGC010000159 DATCGC010000000
VERSION     DATCGC010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1485)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1485)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1485
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_135146"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            428..>1485
                     /locus_tag="VIJ87_01570"
     CDS             428..>1485
                     /locus_tag="VIJ87_01570"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY5443166.1"
                     /translation="MAETDTDAADQYDASISQQKLNESLPGLWARYRKLPRNVFAISL
                     VSLLNDASSEIIYPLLPILLTSVLGASPRAIGIIEGAAESVSSLIKLLAGYLSDRFGK
                     RKILVVSGYALAALARPFLAFATSWQQVLAIRLTDRVGKGVRSAPRDAMIADAVAIEQ
                     RGIAFGFHRAMDHGGAVIGPLLGFVLVLFFVTNQNAPTRIEFTWVLMLAAVPAIAAVL
                     VSIFFMRESTLLAPRETEVKKLSLRGFDSNFKRFLLILALFTLSNSTDSFLILRARNI
                     GVSIKGSLLLWSAHHCMKVLSSLWGGDLSDRLGRKRLIVSGWILYAAVYAGFAFVSNQ
                     YSIWVLFLIYGIYFGLAEG"
BASE COUNT          320 a          397 c          379 g          389 t
ORIGIN      
        1 cgttcagaaa catcaaagtc ttccacgagc atgtaaccaa catcatcctc gaggacttcg
       61 ttgccgcatg tgatccgctg aaggttgaga ttgaaggcga ctttcatgtc cggggaaaca
      121 ttaagacggt ggtgcgggcg agctatgaaa ggaaagtagg cagcaggcag cagcagtagg
      181 cagggttttt gccaataacg tttcgcatgg actctacact agcctattca atcgctgcgg
      241 gcctcggtct tgtcttcctt tttctgttcg caaaattcgc tttaagatgg tttattcgaa
      301 tcgtagttgt cggcatcatt ttggcagtcc tcggaggtgc gacctgggta tggctcaact
      361 attcatccag tcgacccgaa acaaaaccac gccccacgtc gacgcgaagt agtggccggc
      421 aataatcatg gcggaaaccg acaccgatgc tgccgatcaa tacgacgcat ctataagcca
      481 gcaaaaactc aatgaaagcc tgcccggctt gtgggcccgc tatcgcaaac tcccgcgcaa
      541 tgtcttcgcc atcagtctcg tcagcctgct gaacgacgct tcgagcgaaa taatctatcc
      601 gctgcttccc atccttctga cgtctgttct cggggcatct cccagggcga tcggaataat
      661 cgaaggcgcg gctgaatctg tatcgagctt gataaagctt ctggctggat acctcagcga
      721 tcgtttcggc aaaaggaaga tcctggttgt ctccggctac gctcttgcag ctctggcgag
      781 accatttctg gcctttgcta ccagttggca acaagtcctc gccattcgac taaccgatcg
      841 cgttggcaaa ggtgttcgaa gtgcaccacg cgatgcgatg atcgctgatg ccgttgcgat
      901 cgaacaacgt ggtatcgctt ttggattcca tcgcgcaatg gatcacggcg gcgccgttat
      961 cggcccactt ctcggttttg tgttggtgct cttcttcgtg acaaatcaaa acgcgccaac
     1021 tcgaatcgag ttcacctggg ttctgatgct cgctgctgtg ccggctatcg cggcggttct
     1081 cgtgtcgata ttcttcatgc gcgagtcgac attgctagcg ccacgagaaa ctgaggtcaa
     1141 aaaactctcg cttcgtggtt tcgatagcaa cttcaaacga ttccttttga ttctcgcact
     1201 cttcacgctt tcaaactcta cggacagctt tctgattctg cgtgcgcgaa acattggagt
     1261 gtcgatcaaa ggctcgctcc tactctggtc agctcaccac tgtatgaagg ttttgagttc
     1321 actgtggggt ggcgatctat cggatcgact cggtcgcaaa cgactgatcg tgtcaggctg
     1381 gatcctctac gccgccgttt acgcgggctt tgcctttgtg tccaatcagt attcgatttg
     1441 ggtactattt ctcatttacg ggatctactt cggattagcg gaagg
//
LOCUS       DATCGC010000160         2116 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_168700, whole genome shotgun sequence.
ACCESSION   DATCGC010000160 DATCGC010000000
VERSION     DATCGC010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2116
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168700"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..539)
                     /locus_tag="VIJ87_01575"
     CDS             complement(<1..539)
                     /locus_tag="VIJ87_01575"
                     /inference="COORDINATES: protein motif:HMM:NF025034.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartyl protease family protein"
                     /protein_id="HEY5443167.1"
                     /translation="MSKAKLALTLGTLIVLTTGWAAPLLGAAHSYALEQSRDPLAQAT
                     ALSPIRFREDKSAGLLVNGWLNGAGPFTFAIDTGAGASLVTRRVVSAAGLSVSKSKRE
                     LVGGLTTAPISSNEETRGAQISLGTTTNEVPGRPTLAVVSNLPGAIDGIFDPTDLFGA
                     LAFSIDLPNHQLLAFDPRS"
     gene            complement(557..1093)
                     /locus_tag="VIJ87_01580"
     CDS             complement(557..1093)
                     /locus_tag="VIJ87_01580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443168.1"
                     /translation="MIMTNKLLPVALIAALIGGSVGALVMHKSEPAAAETVAQTTPAA
                     NAAQPADSEVVPAEFNTAAEQTAYKSGFADGYNAAAVAENRVGGVSNSRSRVVTRNVV
                     SSSAGPRRVYYDYGQPKGRSFWSKHRDKLTVAMGTGAGAAIGALVGGKKGAAIGALSG
                     AGGSALYTYKLRNRNRNY"
     gene            complement(1419..>2116)
                     /locus_tag="VIJ87_01585"
     CDS             complement(1419..>2116)
                     /locus_tag="VIJ87_01585"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY5443169.1"
                     /translation="RLNSFADGEAADARARLQDLVKQGAQKVVIDMRDTAGGSLTEAV
                     AVANLFIKDGMLAQTVGREGKPLKTFPADPKAVLFSGPVVALIDSGTAGAAEVVASAL
                     IERNRGQVVGEKSFGAGTEQQLFTLRGGDGLLLTTVKWANSSGKTFLGEDRAHSGVAP
                     SVEVKGQEVADGVDPDDLTGNDDDAASKPEPGNEKRDATTPPQPKPATEDIQLKKALE
                     LLRDKPAQTTKAA"
BASE COUNT          512 a          589 c          523 g          492 t
ORIGIN      
        1 ttactacgag gatcgaaagc aagtagttga tgattcggta aatcaataga gaaggctaat
       61 gcgccaaaca gatcggttgg atcaaagata ccgtcaatcg cacccggaag gttcgacact
      121 actgccagag tgggtctacc aggtacttcg ttcgtagtag tccccagtga tatctgggca
      181 ccacgcgttt cctcattgga tgagataggc gctgtggtta gtcctccaac aagttcacgt
      241 ttggactttg aaacactgag accagctgcc gatacaactc ttctggttac caacgacgca
      301 cccgcaccag tgtcgatggc aaatgtgaaa ggaccggctc cgttaagcca tccgttcacc
      361 agtaagccgg cgcttttatc ttcgcgaaaa cgaatgggcg acaacgccgt tgcttgtgcc
      421 aacggatctc tgctttgttc aagggcataa gaatgggcag cccccaaaag tggagctgcc
      481 catccggttg ttagaacaat gagagtacct agagttaggg caagtttcgc tttgctcaac
      541 acccttacct cgtcgattag tagtttcgat tacggttgcg cagcttgtac gtgtagagtg
      601 cggaaccacc agcaccactc aacgcaccaa tcgcagcgcc cttcttgcca ccaaccaacg
      661 caccaattgc tgcaccggca cccgtaccca ttgctacggt gagcttatct ctatgcttac
      721 tccaaaagct tcggccctta ggttgtccgt agtcgtagta aacacgacgt gggccagcgc
      781 tactgctaac cacattccgg gtaacaacgc gcgaacgaga attgcttact ccaccgactc
      841 ggttttcggc gacggccgca gcgttgtaac catcagcaaa gcctgatttg taagctgttt
      901 gctcggcagc agtattaaat tctgccggta ccacttcact atcggccggc tgagctgcgt
      961 tagcagctgg tgtagtttgt gccacggttt cagccgcagc gggttcactc ttgtgcatta
     1021 ccagcgcgcc aacagatccg ccaatcaaag ccgcaatcaa agccactggt agaagtttgt
     1081 ttgtcataat catcgctctg cttctccttg caaagttcta agttctctca accacaaagg
     1141 aagactgcaa gagccattcc cacttcggcc gaggatcacg cttgttgagc agttcggccg
     1201 aaacattagc aaaaatccgt tcggaagtgt cggatgcaag aaatttgcaa gttaaagcga
     1261 attgtcctgc agcataggcg ggcgatgagg tacccgatat ggaaccgacg atacggggag
     1321 aagacaccaa atgcgttatc gatcagtaca ggcgatcaaa agaaaaaccg ggaaaagcga
     1381 actcttcccg gttatccagc aaaactattc aactaacctt aggcagcttt ggtcgtttgg
     1441 gcaggcttgt cgcgcaacaa ttccaaagct ttcttcaact gtatgtcctc agtagcaggt
     1501 tttggctgcg gaggtgttgt tgcgtcgcgc ttttcattgc ctggttcagg tttagaagcc
     1561 gcgtcgtcat cgttgcccgt caggtcatcc gggtcaactc cgtcggcgac ttcctgtcct
     1621 ttcacctcaa cggatggcgc aacccccgag tgggcgcgat cttcacctaa gaaagtctta
     1681 ccacttgagt ttgcccattt cacggttgtc aaaagcagcc cgtcgccacc acgtaatgtg
     1741 aacagctgct gttctgttcc agcaccaaag ctcttttcgc cgacaacctg gccgcgattt
     1801 cgttcgatga gggcagacgc gacgacttca gccgcacccg cggtaccaga atcaatcaga
     1861 gcgacaacag ggccggagaa caacacggcc ttaggatcag ccggaaaagt cttaagaggt
     1921 ttcccttctc gaccaactgt ctgcgcaagc atgccatctt taataaacag gttggccacg
     1981 gcgactgctt cagttaatga accgcccgca gtgtctcgca tgtcgatcac gaccttctga
     2041 gcgccctgct taactaaatc ctgaaggcgt gcccgcgcgt cggcggcttc accatcggcg
     2101 aaactgttga gccgca
//
LOCUS       DATCGC010000161         2492 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_235766, whole genome shotgun sequence.
ACCESSION   DATCGC010000161 DATCGC010000000
VERSION     DATCGC010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2492)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2492)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2492
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235766"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(42..2060)
                     /gene="ligA"
                     /locus_tag="VIJ87_01590"
     CDS             complement(42..2060)
                     /gene="ligA"
                     /locus_tag="VIJ87_01590"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF005932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003911 - DNA ligase (NAD+) activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HEY5443170.1"
                     /translation="MAVAKSPANEIEKLRNEIRRHEDLYYVLDSPEISDREYDQLLEK
                     LQQLEQDHPELVTPDSPTQRVGGRPAEGFAEVVHRLPMLSLDNSYNIEELRAFDERCQ
                     KLADGRPLEYVAELKIDGLSLSLQYVNNVLARGVTRGDGRIGEEVTQNARTIRSVPLR
                     VKSEAKAIDGEIEVRGEVFIPLDVFQKTNAEREEQGEPRFANPRNAAAGAIRQLDSKL
                     VARRKLDMFAYDLLVNGRKPFATHWESLNWLAAAGFRVNPNKELCKSIDQVIDFANEK
                     EKLRDELGYEIDGLVVKANSTALQDDFGATAKAPRWAIAYKYPARQASTQVLSIVVQV
                     GRTGALTPVANLEPVFLAGTTVSRATLHNEDEIKRLGLKIGDWVMIEKSGEIIPKVLN
                     VIKSKRTGKEKAFKPPTHCPVCGGEISRVEGEVVARCVAADCAAQLMGRLLHFASRRA
                     MRIEGLGEVLVVQLVEAKLVKDVGDLYSLTLEQVSGLPRMAKKSATNLLEQIEASKSR
                     DLGQLIYALGLRHVGERTAGILAHHFGSLEKLAKATTEELDDIPEIGLTVAQSVRDWF
                     DDDGNRELCDRLRGVGVKTELEKTSANELDERFAGKQFVLTGKMEGFTRDEARALIEA
                     RGGRVNSSVSKKTDYVIAGEEAGSKLDKATELGVTVMDEAGFKKLMSD"
     gene            complement(2064..>2492)
                     /locus_tag="VIJ87_01595"
     CDS             complement(2064..>2492)
                     /locus_tag="VIJ87_01595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443171.1"
                     /translation="EHLDVRGFKDIEIIELGSAPLAKSSAKSPVARAVISASKEIYNT
                     APLIYPMDPSSGPVGAVCGVGQPPTPVASFGTSYSGSNPHGPDENIRIDDFLLSIKLI
                     GRVIHKLAEGKNKPNTHSSISDDQKPTAPLPKLKHSERKE"
BASE COUNT          546 a          736 c          578 g          632 t
ORIGIN      
        1 aatctttgtt tcttcagagc ttcctgaagt ctgtgcctca tctagtcgga catcaacttt
       61 ttaaaccccg cttcatccat cacggttacg cctagttcag ttgccttgtc caacttcgat
      121 cccgcttctt cgccggcaat cacgtagtca gtcttcttgc tcacagacga attaacacgg
      181 ccgccacgtg cttcaatcaa cgcacgtgct tcgtcacgag taaaaccttc catcttcccg
      241 gtcagtacaa attgcttacc ggcgaagcgc tcatccaact cattcgcgct cgttttttcg
      301 agttccgtct ttaccccgac tcctcgcagc ctatcacaga gctcacggtt gccatcatca
      361 tcaaaccaat cacgaacgct ctgagccacc gtcaatccga tctcaggtat gtcgtccaac
      421 tcttccgttg ttgcctttgc cagcttctcc aaagagccaa agtggtgcgc gagaatccct
      481 gctgttcgtt ctcctacgtg acgcagccca agcgcgtaga tcagttgtcc gagatcgcgt
      541 gacttgctag cctcgatctg ttccaacaga ttcgtcgccg acttcttcgc cattcgcgga
      601 agacccgaaa cctgttcaag cgtcagtgaa taaaggtcgc cgacgtcctt cactaacttc
      661 gcttcaacga gttgaactac cagtacttca ccgagcccct cgatacgcat cgcgcgtcgc
      721 gacgcaaaat ggagcaggcg acccatcaac tgcgcagcgc aatcggcagc gacacaacga
      781 gcaacaactt cgccttcgac tctcgaaatc tcgccaccgc aaaccgggca atgagtggga
      841 ggcttgaatg ccttttcctt gccggttcgt ttcgacttga tgacattcag caccttggga
      901 atgatttcgc cgctcttctc aatcattacc cagtcgccaa tcttgagtcc caacctcttg
      961 atctcgtctt cattgtgaag cgtcgccctt gagaccgtgg tacctgcaag aaaaacgggt
     1021 tcgagattcg ccaccggcgt taaagcaccg gtccgcccaa cctgaactac gatagacaga
     1081 acctgggtgg aagcttgtcg agctggatac ttgtaggcga tggcccaacg aggtgctttt
     1141 gcagtcgcgc cgaaatcgtc ctggagagca gttgagttcg ccttaacgac gaggccatcg
     1201 atctcgtatc cgagttcatc acgaagtttt tctttctcgt tcgcaaaatc gattacctga
     1261 tcgatcgact tgcaaagctc cttgtttgga ttcacccgaa acccggctgc ggccaaccaa
     1321 ttcaacgact cccaatgcgt agcaaatggt ttgcggccgt tcaccagcag gtcgtaagca
     1381 aacatatcca acttacgtcg cgccaccagc ttggaatcca gctgtcgaat tgcgcccgcc
     1441 gccgcatttc gtggattcgc gaaacgaggc tcaccttgtt cttctcgctc cgcattcgtc
     1501 ttctgaaaca catccagcgg aatgaagact tcgccacgca cctcaatctc accgtcaatc
     1561 gcctttgctt cagacttcac gcgcaatgga acactgcgaa tcgtgcgtgc attctgtgtc
     1621 acttcctcgc caatgcgacc gtctccccga gtaacgcccc tggccagcac gttattcaca
     1681 tattgcagcg ataacgaaag cccatcgatc ttcagctcag caacgtattc gagtggacga
     1741 ccgtcagcta acttctgaca gcgttcgtcg aaagcacgta gttcttcaat gttgtagctg
     1801 ttatcgagcg acaacatggg aagccgatga acaacttcgg caaagccctc cgctggacgg
     1861 ccaccaactc tttgcgttgg gctatcgggc gtgaccagtt ccggatggtc ttgttcgagc
     1921 tgttggagtt tttcgagaag ttgatcgtat tcgcgatcgg agatttcagg tgagtccaag
     1981 acgtagtaaa ggtcttcgtg tcggcggatc tcgttcctta gtttctcgat ctcatttgcg
     2041 ggtgacttgg cgacggccaa acgttattcc ttcctttcgg agtgtttgag cttgggaagc
     2101 ggcgcggtcg gtttctggtc atcgctaatc gatgaatggg tgttcggctt gttctttcct
     2161 tcagctaatt tgtgaatcac tcgcccgatt aacttgatgc tcaaaagaaa atcgtcgatg
     2221 cgaatgtttt catccggccc atgtggattc gatccggaat agcttgtacc aaaggacgct
     2281 acgggcgtcg gcggttgacc aactccacaa accgctccca cgggaccgct cgatggatcc
     2341 atcgggtaaa tgagtggggc agtgttgtaa atttccttgg acgcactgat caccgcccgc
     2401 gcgaccggag acttagccga agacttcgcc agtggcgcac ttcccaattc aataatttcg
     2461 atgtctttga atccacgcac atccaaatgt tc
//
LOCUS       DATCGC010000162         1596 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_301605, whole genome shotgun sequence.
ACCESSION   DATCGC010000162 DATCGC010000000
VERSION     DATCGC010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1596)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1596)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1596
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_301605"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1503
                     /locus_tag="VIJ87_01600"
     CDS             <1..1503
                     /locus_tag="VIJ87_01600"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAT domain-containing protein"
                     /protein_id="HEY5443172.1"
                     /translation="DKAEQQLRLSGNDTEAQATTIQKDLDALTTEYEQVQTQIRQSSP
                     KYAALTKPVSLGLQEIQSGLLDQDTVLLEYALGEDKSYVFLVSSTSLKTFELPSRGTI
                     EKAARSVYDLVTASDRVVPNETLEQRNKRLDQADSDYPASAAELSQMLLAPLGSELKN
                     KRLLIVGEGILQYVPFGALPEPDTESRVSSSEFRVQNATSQNSTSKPETRNSAPSNPN
                     SKLETQNSKPLIASHEVITLPSASVLGVLRSEAKDRPRATKTIAVFADPVFGAQDPRI
                     GSISKNRPAENPELEQAGDVKRSAEESGLNGFPRLRFSRQEAEQIMRLVPRNNSLEAL
                     DFVANKSTATSADLKQYRIVHFATHGLINSRHADLSGIVLSLVDQEGKPQNGFLRLYD
                     IYNMNLSSDLVVLSACQTALGKDIKGEGLVGLTRAFMYAGASRIVASLWRTEDRATAV
                     LMNRFYEGLLANNGMSPAAALRKAQLSMWQDKRWKQPRYWAAFTLQGEWK"
BASE COUNT          444 a          399 c          407 g          346 t
ORIGIN      
        1 gacaaagcag aacagcaact gcgcctcagc ggtaacgaca ccgaagcaca agcgacgacc
       61 atccagaaag acttggacgc actcactaca gaatacgagc aggtccaaac tcaaattcgg
      121 caaagcagtc ccaagtacgc ggctcttact aaacctgttt cgttgggcct ccaggagatt
      181 cagtctggct tgctcgatca agatacagtc ctgcttgaat acgcacttgg cgaagacaag
      241 agttatgtat ttctcgtctc atcgacatct ctgaagactt tcgaattacc gtcacgtggg
      301 accatcgaaa aggcggctcg cagtgtttac gatctagtga cggcttcaga tcgcgtcgta
      361 cccaacgaga cactggagca gagaaacaaa cgacttgatc aggccgatag cgactatcct
      421 gcatcagccg ccgaactgag tcagatgtta ttagcaccgc tcggttctga actgaagaac
      481 aagcgactcc ttatcgtagg cgagggcatt ttgcaatatg ttccgtttgg cgcgttgcca
      541 gaaccagaca cggagtctcg agtttcgagt tccgagtttc gagttcaaaa cgcgacatcc
      601 cagaattcaa cctcgaaacc tgaaactcga aactcggcac cttcgaatcc aaactcgaaa
      661 cttgaaaccc aaaactcgaa accattgatc gccagtcacg aagtcatcac tcttccttca
      721 gcgtctgtgc ttggagttct acgaagcgaa gcgaaggatc ggccacgtgc gaccaagaca
      781 atcgcggtgt ttgccgatcc agtgtttgga gcacaagacc caaggatcgg ttctataagt
      841 aagaaccggc ctgcagaaaa tccagagttg gagcaagcgg gcgatgtcaa aagatctgcc
      901 gaggagtcgg gtcttaatgg ttttcccagg ttgcgtttta gtcgacagga agctgagcag
      961 ataatgcggc tcgttccccg gaacaatagt cttgaagctc tcgacttcgt agcaaataaa
     1021 tcgacggcaa cgagtgcaga cttgaagcag taccgcatcg tacactttgc gacgcatggt
     1081 ctaattaata gccgtcatgc tgacctttca ggaatagtgc tgtcacttgt agaccaggaa
     1141 ggtaaaccgc aaaacggttt cttgagactc tacgatattt acaacatgaa tctgtcgtcc
     1201 gacctggttg tcctttcagc ctgtcaaaca gcgcttggga aagatataaa gggagaaggt
     1261 ctggttgggc tgactcgcgc tttcatgtac gccggggcgt cacgaattgt ggcgagtcta
     1321 tggagaacag aagatcgtgc cactgctgtg ctgatgaacc ggttctatga aggcctgctg
     1381 gcaaacaacg gaatgagtcc ggctgccgcg ctaaggaaag cgcaactgag catgtggcag
     1441 gataagaggt ggaaacaacc acgatactgg gcagcgttta ctttacaagg tgagtggaaa
     1501 tgagcttgct acaatggaag cacacgagaa cgctgactta ttaatggcca acgcagaaaa
     1561 tccgccctcg agcacgtccg caaaatggac tcttac
//
LOCUS       DATCGC010000163         2220 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_401634, whole genome shotgun sequence.
ACCESSION   DATCGC010000163 DATCGC010000000
VERSION     DATCGC010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2220)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2220)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2220
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_401634"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..355
                     /locus_tag="VIJ87_01605"
     CDS             <1..355
                     /locus_tag="VIJ87_01605"
                     /inference="COORDINATES: protein motif:HMM:NF022142.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2490 domain-containing protein"
                     /protein_id="HEY5443173.1"
                     /translation="LFFQNNKTTSQPRFRDRVAVEIPLAKGDKAWTPKTFYTVADVEP
                     FWRLDDGFLEKVRVRGTIGYIVKKRFAVEFIYHAEFAGSKGEPKKFVGNLFRVNFKFL
                     FARGKGIFPRIDIDD"
     gene            complement(521..1057)
                     /locus_tag="VIJ87_01610"
     CDS             complement(521..1057)
                     /locus_tag="VIJ87_01610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443174.1"
                     /translation="MTINIPARAIPIFICMVLALSIPYSTAVGQQHGETQVRIAPDIR
                     AIPSAGLQYELPNGWKAENQENGNVFLTFEEGAANVTFVFDENYAGVVEGMKGGLKEQ
                     LTEIKFDGAVKEDTHNGMKHISESGTGMMKGVKIIWSIDVLKATKHVTILTFGVEEVL
                     QKHVDEYSKFISSLKKSN"
     gene            complement(1310..>2220)
                     /locus_tag="VIJ87_01615"
     CDS             complement(1310..>2220)
                     /locus_tag="VIJ87_01615"
                     /inference="COORDINATES: protein motif:HMM:NF012739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HEY5443175.1"
                     /translation="HTWLPDNVHTAPEVAEVIAKLPWWAVQSLLYIIVTFILVAFAWT
                     SLARVDVVAVANGIVIPQGNIKPIQPASSGVVQNVFVKEGDRVGVGDALIQLDAAEMR
                     TRLFKLRQELEVDQSQLRLMMVNRPISDTLEQRNRIARLQTDISAAEKMLRHTTITSP
                     AKGIITTLNVRGPGEVIQQGQTVAMIAPSDVPLVVEALLADKDIAFVQKGLPAKLKFE
                     AFPFQDYGVVEGTVIDVSPDATNKDSVNYYKVTIAPSKTWISTGGKDVMLRPGLSVSA
                     EIITDRRTVVSLLLEPVRRFKSEIAH"
BASE COUNT          503 a          571 c          562 g          584 t
ORIGIN      
        1 gctttttttc cagaacaaca aaacgacatc ccagccgcga tttcgcgatc gcgtcgccgt
       61 agagatcccg ctcgcaaagg gtgacaaagc gtggacacct aaaaccttct atacggtcgc
      121 tgatgtagag ccgttctggc ggctcgacga cgggttcctg gaaaaggtca gggtgcgtgg
      181 caccattggt tatatagtca aaaaaaggtt tgctgttgag ttcatttacc acgccgagtt
      241 tgcgggctcg aaaggcgagc ctaaaaaatt tgtcggcaac ctatttcgtg tgaatttcaa
      301 gttcttgttc gctagaggga aaggcatttt ccccaggatc gatattgatg attaggaaga
      361 gggcggacgg ccacatttaa ggcgcagctg aaacgggaga ggaccaccag atgacagcga
      421 ccaagaaatg ggccaggtgc atcgatggaa acaatttctg ttacgcaatc aagaacaatc
      481 cgaaaatcac tcaatccacc gcatccgctc cctgagaggc ttaattgctt ttcttcaggc
      541 tgctgatgaa cttcgagtac tcgtcgacgt gcttctgcag cacttcttcc acgccaaaag
      601 tgagaatggt gacgtgcttg gtggctttga ggacgtcgat gctccagatg atcttcacgc
      661 ctttcatcat acccgtgccg ctctcgctga tgtgtttcat accgttgtga gtgtcctcct
      721 taacggcgcc gtcaaacttg atttccgtga gttgttcctt gaggccacct ttcatgcctt
      781 caaccacccc agcgtaattt tcgtcaaaca caaaagtaac gttggcggcg ccttcctcga
      841 atgtaaggaa gacgttgccg ttctcctggt tttcggcctt ccagccgttg ggaagttcgt
      901 actgcagacc ggcggacggg atggcgcgaa tgtccggcgc aatacgcacc tgagtctcgc
      961 cgtgctgctg accgaccgca gttgagtagg ggatcgagag tgccaatacc atacagatga
     1021 atatcggtat agcgcgcgct ggtatgttta tggtcatggg gtttgcgtcc ttctagccag
     1081 gatcgatcgc tgccgcggag gccgttattt ccaaggctat ttgtcttggt ctcctgacag
     1141 cagattggtg gtgcgttcag tgacacttgg tgggaagttg agtgcttgct gatttcattc
     1201 agctcaactc actgttttct cagatcgaat cttagcatag acgcatccat agagagggtg
     1261 gcaataagat tctgtactat cgtcatcgct tccctgctga gatcattagt caatgtgcga
     1321 tttcgctttt gaatctacga actggttcaa gcagcagact tacaactgtt cttcggtcgg
     1381 taattatttc tgcactcacc gagagtccgg gccgaagcat gacatcttta cctccagtcg
     1441 agatccatgt cttactcggc gcaattgtta ccttgtaata attgacgctg tctttgttgg
     1501 tagcatccgg tgaaacatca atcactgtcc cttcaacaac tccatagtcc tggaatggaa
     1561 atgcctcaaa cttcagtttt gctggcagac ctttttggac gaaagcgata tctttgtctg
     1621 caagtagcgc ttcaactacc agaggcacgt cacttggcgc gatcatcgct acagtttggc
     1681 cctgctgtat aacttccccg ggacctcgga cattgagcgt tgtgataatc ccctttgccg
     1741 gcgaggtaat cgttgtgtgc cgtagcatct tctcggcagc actaatgtca gtttgcaagc
     1801 gcgcgatgcg attccgttgt tccagcgtgt cgctgattgg tcggttgacc atcatcagcc
     1861 gtaactgaga ttgatccact tccaactctt gtcgcagttt gaacaggcgc gtccgcatct
     1921 cagcggcgtc taactggatc agtgcgtcac cgactcccac tcgatcacct tccttgacga
     1981 atacattctg cacgacgccc gaacttgcgg gctgaatagg cttgatgttg ccctgcggga
     2041 tgacgatacc gtttgctacg gcaaccacat caaccctggc aaggcttgtc catgcaaaag
     2101 ccacaaggat gaaagtaacg atgatataga ggagactttg aaccgcccac cagggcagtt
     2161 ttgcgatcac ctctgctact tcaggagctg tgtgaacgtt atccggcagc cacgtatgat
//
LOCUS       DATCGC010000164         1963 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_468141, whole genome shotgun sequence.
ACCESSION   DATCGC010000164 DATCGC010000000
VERSION     DATCGC010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1963)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1963)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1963
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_468141"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            96..>1963
                     /locus_tag="VIJ87_01620"
     CDS             96..>1963
                     /locus_tag="VIJ87_01620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443176.1"
                     /translation="MLFTKNPEAEFTSEDKADEPRQRTLEKLVNVLAAKKTSPGLNLK
                     RKVKRNIVSTTLTNVGWFECGYTLREQSSEAALEEVKKLSAELEQAKSQKDIKECEGK
                     LLALEETIDMLTPSGPWVKVRRPDQVIVDPTATDLDLSGTCNWVMIEDLMYTSLLRAK
                     YGRKKPNSDEWESVFSPTNVIKAGVSPDQGERGQTDNFQLFSYSTSEYAKYGYSDQRS
                     FLAAQMTKVCYVWDKVTRRVELYNCNDWCYPLWVWDDPYSLDQFFSVVPMEFHTDPIT
                     MYAKGEVTYYLDQQDDINIINNEWSKVRRFAAGKVAYDKNALKSADVLESLISGTLDS
                     NTIGLDLPEGKKLGDVLGPLLPPSADAIKFFDKKPVLEAIDRLSGVTSVQRGVEYKTN
                     TTNRAIESYESQTQTRADEKMDAIEDSVGTVLWLVAQMCLQFMEKEEVATLLGDEMAS
                     TWEKMDANSIRTTFTPRVVGGSTLKPTSRAKKEQALQISQIIGQFTRATPIAAVVALK
                     VLATAFDNAVISQTDWELIYKGIIKETSGPAPGEEQAQQQDAQGKEAMMQRMHERAMA
                     AQGGQQGAPQGAGGGQGGGGSQGASGPQIDDIASIVQEVARLIDGLPPELKQHLGV"
BASE COUNT          586 a          475 c          502 g          400 t
ORIGIN      
        1 gaactgagga agatagtaca gccggtaaac ccctccaagg tacgtttgac agcactgaga
       61 acttggtatt tgcgaacgtc agcgctctcg ttcctatgct attcactaaa aacccggagg
      121 ccgagtttac tagtgaagac aaagcagatg aaccacgcca gcgcacactt gagaagctag
      181 tcaacgtact cgccgctaag aaaacatctc ccggcctcaa cctcaaacgc aaggtcaagc
      241 gcaacatcgt cagcactaca ctcaccaatg taggctggtt cgagtgtggt tacacactac
      301 gtgagcagag cagtgaggca gcactagagg aagtcaagaa actcagtgct gagctagagc
      361 aagccaagtc gcagaaggac attaaggagt gcgaaggcaa gctgctagcg ttggaagaaa
      421 ccattgacat gctcacacct agtggtccgt gggtgaaagt acgccgtcca gaccaagtaa
      481 tagtcgatcc aacagctacc gacttagacc ttagtggcac atgtaattgg gtcatgattg
      541 aagacttgat gtacacatca ctactgcgcg ccaagtacgg acgcaagaag cctaacagcg
      601 atgagtggga gagcgtgttc tcacctacta atgtcatcaa ggcaggagta agtccagatc
      661 aaggcgaacg tggtcagaca gacaacttcc agctattcag ctacagcact agtgagtatg
      721 ccaagtacgg ctacagcgac caacgcagct tcctcgcagc acagatgaca aaggtgtgct
      781 atgtatggga taaggtcaca agacgagttg aactatacaa ctgcaatgac tggtgctatc
      841 ctctgtgggt atgggatgat ccttattcac ttgaccagtt ctttagtgtg gtgccaatgg
      901 agttccacac tgatccaatc actatgtacg cgaagggcga agttacctac tatctagatc
      961 aacaggatga cataaacatc atcaacaatg agtggtctaa agtacgtcgc ttcgctgcag
     1021 gtaaggtagc atatgacaag aacgcactca agagcgcaga cgtactcgaa agtcttatct
     1081 ctggcacact cgatagtaat acaatcggct tggatttgcc agagggcaag aagctcggtg
     1141 atgtactcgg cccattacta ccacctagtg ccgacgccat caaattcttt gacaagaagc
     1201 ctgttcttga ggccattgac cgcctctccg gtgtcaccag cgtccaacgt ggtgtcgagt
     1261 acaagacaaa caccaccaac agagcaatag agagctacga gagccaaaca cagacacgcg
     1321 ctgatgagaa gatggacgct attgaagaca gcgtaggcac agttctgtgg ctagtagcac
     1381 aaatgtgctt gcaattcatg gaaaaagagg aagttgctac actactcggt gatgaaatgg
     1441 cgtcaacttg ggagaagatg gatgcaaatt caattcggac gacattcacg cctcgtgttg
     1501 tgggcggtag cactctcaaa cctacttcta gggcgaaaaa ggagcaagca ctgcaaattt
     1561 cgcagatcat cggtcaattc actcgtgcga cacccattgc agcggtagtt gctctcaagg
     1621 ttctagcaac agcattcgat aatgctgtca taagtcagac agattgggag ctaatctaca
     1681 aaggcatcat caaagagaca agtggacctg ctcccggtga agaacaagca caacaacagg
     1741 acgcgcaagg taaagaggcc atgatgcaac gtatgcacga acgtgctatg gctgcacaag
     1801 gtggacaaca aggcgctccg caaggtgctg gtggtggtca aggcggcggt ggcagtcaag
     1861 gtgctagtgg accacagatt gacgacattg catcaatcgt acaggaggta gctcgcctaa
     1921 tcgacggtct accgcctgaa ctgaaacaac atctcggcgt aca
//
LOCUS       DATCGC010000165         2343 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_235853, whole genome shotgun sequence.
ACCESSION   DATCGC010000165 DATCGC010000000
VERSION     DATCGC010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2343)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2343)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2343
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235853"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1183)
                     /locus_tag="VIJ87_01625"
     CDS             complement(<1..1183)
                     /locus_tag="VIJ87_01625"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5443177.1"
                     /translation="MLQDVRYAIRMLLKNSGFTAVVVLTLALGIGANAALFSIVNGVL
                     LNPLPFPNPDQLVTIHQSKPNFETGAVPYPNFLDLQSQNQTFSSMAISRPTGFSLMGL
                     GEPERVRGRFVSADYFSVLGLKPELGRFFTSEDDKSGGAPVVIISAQLWARKFASSPD
                     VLRQSMTLDDKSYSIVGVIPASFDLVQRDVFVPLGQWGTPALKNRGAALGLHGIGRLK
                     PGVTIDQAEADLDRIMASLAVTYPETNKNNSAKLVGLKTSLVGDIETTLWTLLGAVGF
                     VLLIACVNVSNLMLARSTGRAREFAIRTALGAARSRLLRQSLIESMLLAFVGGAVGLT
                     LAAWGTKAALAALPTALPRSSEIHLDGRVLVFTLAVSMLTGILAGLAPALKASRGHFN
                     QT"
     gene            complement(1272..>2343)
                     /locus_tag="VIJ87_01630"
     CDS             complement(1272..>2343)
                     /locus_tag="VIJ87_01630"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY5443178.1"
                     /translation="FESNQVLTARISPSGTNFKTDADYIAFYQRVIEKVSALPGVRDT
                     GAINTLPLSKGPTIGFRVEGRPITTPDKWPIVNFRNVTPNYFRAMSIPVLQGRAFNEH
                     DNANAPLTMIVNQALAEQNFPNESAIGKRITFGGTDSNQQPIWFEIVGVTANVRSLEL
                     REEPMAELYFSTLQDPFASMTLVVRSSVEPESVAGPIRQAVAEVDRTVPVSSVETMEH
                     IVSTSVTQPRFNLFLLGLFSVVALLLSAAGIYGVTSYTVAQRTHELGIRLALGAQVGD
                     VLRMILGQGMAVIMIGVVLGLGASFGLLRLMKSLLFGVSETDPLTYVSITLVLVMVAL
                     LACYIPARRATKVDPLEALRYE"
BASE COUNT          596 a          634 c          598 g          515 t
ORIGIN      
        1 acgtttgatt gaaatgtccg cgcgaagctt ttaaggctgg tgcgaggcct gcgagaattc
       61 cggtaagcat cgagacggcc agtgtgaaaa ccaggacgcg tccatccaaa tgaatctctg
      121 aagatctcgg caatgcagtc ggcaacgcag cgagcgcagc cttggttccc caggcggcga
      181 gagtcaatcc aaccgcacca ccaacgaaag cgagcaacat gctttcaatg agcgactgtc
      241 gaagcaatcg cgatcgcgcc gcgcccaacg ctgttcgaat cgcgaactcg cgcgcccttc
      301 cggtagatcg cgcaagcatc agattactga cgttgacgca cgcaatcagc aacacaaacc
      361 caacggctcc gagcaacgtc cataaggtcg tttcgatgtc ccccacgaga gacgttttca
      421 ggccaaccaa cttggcactg ttgttcttat tagtttccgg ataagtaaca gccaggcttg
      481 ccatgatgcg atccagatca gcctcggctt gatcgatcgt cacaccaggt ttgagtcgac
      541 caattccatg aagacccaga gctgcaccgc gattttttaa ggcgggagtt ccccattgac
      601 caagcggaac aaatacatcg cgttgaacga gatcgaagct tgccggaatc accccaacga
      661 tcgagtagct cttgtcgtcg agagtcatgc tctggcgaag cacatcaggc gatgaagcga
      721 actttcgtgc ccacaactgg gcactaatga tcactacagg cgcaccgccg ctcttgtcgt
      781 cttcactcgt gaaaaagcga ccgagttcgg gtttgagtcc aagcactgaa aagtagtccg
      841 cggatacgaa tcgacctcta acacgttccg gctcgcccaa tcccatcaaa ctgaatcccg
      901 ttggtcgact aatcgccatc gaagagaatg tttggttctg actctgtaga tcgaggaagt
      961 tcggatacgg aaccgcaccc gtttcgaaat ttggtttgct ttgatggata gtgacgagtt
     1021 gatctggatt tgggaaaggc aaaggattga gcagcacgcc gtttacaatt gagaacagcg
     1081 cggcgttggc accaataccg agtgcaagag tcaacacaac cacggcggtg aaaccggagt
     1141 tcttcagcaa cattctgatg gcgtagcgaa cgtcttgaag catgtttgcg tgtggcacag
     1201 acttcagtct gtggctcctc ctttgcacca ggattcaact atcaacaaac acagactgaa
     1261 gtctgtgcca cttactcgta gcgaagcgcc tccaacggat ctacttttgt tgcgcggcgt
     1321 gctgggatgt agcacgcaag caacgcaacc atcaccaaaa ccaaagtgat gctgacgtac
     1381 gtcagcggat ctgtctcact aactccaaac aacaaactct tcatcaaccg cagcagtcca
     1441 aatgacgcac ctaaaccaag cacgacgcca atcatgatca ctgccattcc ctgcccgagg
     1501 atcattcgca ggacgtcgcc cacttgtgcc ccgagcgcga gacgaatgcc aagctcatgc
     1561 gttctttgag caaccgtgta agaagtgact ccatagatcc ctgccgccga cagcaacaag
     1621 gcaacgacgc tgaagagacc caacaaaaac agattgaagc gtggttgagt gaccgaggtg
     1681 ctaacgatgt gttccatcgt ctcgacgctt gaaacaggaa cggtccgatc aacttccgca
     1741 actgcctggc gtattggccc ggcgacgctt tcaggttcga cacttgatct aacgacaagc
     1801 gtcatactcg caaacggatc ttgaagagtt gagaaataga gttcagccat tggctcttcg
     1861 cgcaattcca gactgcgtac gttggccgtc acgccaacga tttcgaacca gattggctgt
     1921 tggttgctgt cagtgccgcc aaaggtgatg cgcttcccta tcgcactttc atttggaaag
     1981 ttctgttcgg cgagtgcctg attcacgatc atcgtcaaag gcgcgttggc attgtcgtgc
     2041 tcattaaagg cccgaccctg aagaactgga atactcatcg cgcggaagta gttcggagtg
     2101 acgttgcgaa aattaactat cggccatttg tcaggagtcg taattggtcg accctcaact
     2161 ctgaaaccaa ttgtcgggcc tttgctcaag gggagcgtgt tgatggcgcc cgtgtcgcgc
     2221 acacctggaa gagcactgac tttctcgatc acgcgttgat agaaagcgat gtagtcggca
     2281 tcggttttga agtttgtacc cgatggtgaa attcgggcag taagtacttg atttgattcg
     2341 aag
//
LOCUS       DATCGC010000166         3393 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_301683, whole genome shotgun sequence.
ACCESSION   DATCGC010000166 DATCGC010000000
VERSION     DATCGC010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3393)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3393)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3393
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_301683"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2732)
                     /locus_tag="VIJ87_01635"
     CDS             complement(<1..2732)
                     /locus_tag="VIJ87_01635"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY5443179.1"
                     /translation="MKSVSSRLVFLFLFTLLSFFQVPAQDLDTATIKGLVQDQNGGVI
                     PGAAVEVTLLKTHSKRNAITDAAGRYRVIQLEPGSYSVRISSSGFAAVDLKDVSTIAG
                     QTLQLDTVLAPATVNAETVVVSTNDAPTIDTHRTVVGTTLTTRETQLLPLASRSVFDL
                     IFTLPGVTEEPLSTRDLAEDRNSSPNNTPEEAGVFALAGAPAYSNNLTIDGLDNNDDR
                     AARERFQPPLEAVEEVQVITNQFSAEYGRASGGRVNLRTRSGSTDFRGRALYFFRDEA
                     LDANTFKNNSLGLSRLPFQEHVGGFTFSGPIKLPRRNRNSAFFAGYELNRILDSALID
                     TLVPVDQHKAFSLPSPTNLSERRLEDVSDPALAAEVAPFVSSISTPSTTTSVTARVDH
                     QFNEMHNLALVYQRGRLTNLRGFGGGNRLAEALQGRTRNSDAISASDNLVLSARVVSQ
                     ARFQVSRLAPRFSTRTDKPVVLIALNDPIVTGTLVAGSSTSGSSDRRESRFQFQNILS
                     LVEGNHSMKFGVDVHRVNSEFIDLTDTTGTYNFASAGDFLASTPSRFRQTFQTDSSQR
                     NNYLGFFIQDEWQLHPQLLLSYGLRYERESIIHDLNNFGPRISLAYNPGSSNTLVLRF
                     GGGIFYNRALLRTIDDFTLGKQQLFFDTNALRDSQTGKLLTTAQRRDFMARHLRFPDT
                     LKSDSDLVKSFGVLNTNFSRRLDLKLRIPQSYQVNFGVERDLGRGYSVETNFTLTRGI
                     HLWREFNANAPRLPAGYSNFASFLASRDFPNFVNASNGTRPIYDATAAGELVRFAFQP
                     STSNPNSISRVMEFGVPVSIFNLTSPTSSTAIATALAALNNLRPDPSRAEVEQLISAG
                     NSFYRGLTLELRRRYVVNDNGFAFSFRAGYTLSKLIDDGVVNTSDALTPGDFRA"
     gene            complement(3003..>3393)
                     /locus_tag="VIJ87_01640"
     CDS             complement(3003..>3393)
                     /locus_tag="VIJ87_01640"
                     /inference="COORDINATES: protein motif:HMM:NF024979.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEY5443180.1"
                     /translation="SRKPKTYTISAVAEQYGIHPQTLRLYEREGLLKPSRSEGNTRLY
                     TDPDLERLELILSLTRDLGVNLAGVEIILNMREKMDAMQHEFERFFQYLQTHAEELTN
                     FDAPPEGTSESLVPLTRSAALRRRASR"
BASE COUNT          816 a          769 c          987 g          821 t
ORIGIN      
        1 tccgcacgaa agtctccagg cgtcaaagca tctgaagtat tcaccactcc gtcgtctatc
       61 aactttgaca acgtgtagcc tgcacgaaac gagaacgcaa agccgttatc gttgaccacg
      121 taccgtcgac gcagttccaa cgtgagaccg cgatagaaac tgttaccagc tgaaatcagt
      181 tgctcgactt cggctcgtga aggatccggt ctgaggttat tgagtgcagc gagcgcggtt
      241 gcgattgcgg tcgacgaagt tggactggtg aggttgaaaa tggaaaccgg aacaccaaac
      301 tccatgactc ggctaatgct gttgggattt gatgttgagg gttggaacgc gaatctaact
      361 aactcgccgg ccgccgtcgc gtcatagatc gggcgagttc cgttcgaagc gttaacgaaa
      421 tttggaaaat ctcgagaggc caggaacgac gcaaaatttg aatagcccgc aggaagtcga
      481 ggagcattgg cgttgaattc acgccataag tgtattccgc gtgtcagtgt gaagttggtt
      541 tcaactgaat aacctcggcc caagtcacgc tccacaccaa agttaacttg atagctttga
      601 ggaattcgca gtttgagatc gagacgacgc gagaagtttg tgttgagaac accaaagctc
      661 tttacgagat cagaatctga tttcagcgtg tcaggaaagc gaaggtgcct ggccataaag
      721 tctcttcgtt gggcggtcgt aagcaacttg ccagtttgcg agtcgcgcaa tgcattcgta
      781 tcgaagaaga gttgttgttt accaagtgtg aagtcgtcga tagtgcgcag cagcgcccgg
      841 ttgtagaaaa tccctccacc gaatctcaag accagtgtgt ttgacgatcc agggttgtaa
      901 gccagcgaga tgcgcgggcc gaagttattc aagtcatgaa taatcgattc gcgttcgtac
      961 cgaagcccgt agcttagaag tagctgagga tggagttgcc actcgtcttg aatgaagaac
     1021 ccgaggtagt tatttcgttg tgaagagtct gtctgaaaag tctgacgaaa gcgcgagggc
     1081 gtactcgcaa ggaaatcacc ggcgctggca aagttgtagg tgccagttgt gtcagtcaga
     1141 tcgatgaatt ctgaattgac ccggtgaaca tcaacgccga acttcatcga gtggttgcct
     1201 tcaaccaacg agagtatgtt ttgaaactga aagcgcgact cgcgtcgatc acttgagcct
     1261 gaggtggatg accctgcgac aagcgttccg gtaacaattg gatcgttcag cgcaatcagg
     1321 accactggtt tgtcagttcg tgttgagaaa cgaggcgcta gccgcgaaac ttggaagcga
     1381 gcctgactta cgactcgggc cgagagaacg aggttgtcag aggctgaaat cgcgtctgag
     1441 tttcgtgttc ttccttgtag tgcttccgcc aggcgattgc ctccgccaaa cccacgtaga
     1501 tttgtaagtc tcccgcgttg ataaacaagc gcaaggttgt gcatttcgtt gaactgatga
     1561 tcgactcgcg cggtgacact tgtcgtagtc gagggcgtac taattgaaga gacgaacggt
     1621 gcgacttcag cagcgagagc tgggtcgctg acatcttcca gtcgacgctc agaaagattg
     1681 gtcggtgagg gcagagaaaa tgctttgtgc tgatcgacag gcactaatgt gtcaatgaga
     1741 gcgctatcga gaattcggtt gagttcgtaa ccagcaaaga aggcagagtt ccggtttctt
     1801 cgagggagtt ttattggacc gctgaaggta aagccaccga cgtgttcctg aaaaggcaag
     1861 cgagacagac cgagtgaatt gtttttgaaa gtattggcgt caagcgcttc gtcgcgaaag
     1921 aaatagagtg ctcgaccacg aaagtctgtt gagccacttc gcgtccggag gttcacacgt
     1981 ccgcctgatg cgcgtccgta ctcagctgaa aactggtttg tgatcacctg tacttcctcg
     2041 acggcttcga gcggtggttg aaagcgttcg cgagcagcgc ggtcgtcatt gttgtcgagc
     2101 ccatcgatcg tcaggttgtt tgagtaggca ggtgcgccgg ccaacgcgaa gacgcctgct
     2161 tcctcaggcg tgttgtttgg agacgaattg cgatcttcgg caaggtcacg agttgagagt
     2221 ggttcctcag ttacgccggg aagggtgaag atgagatcga aaacggatcg actcgcaagt
     2281 ggcaagagtt gcgtctcgcg ggtcgtgagc gttgtgccaa ctacggtgcg atgcgtgtcg
     2341 atggtgggcg cgtcattcgt cgaaactacg actgtttcgg cgttgactgt tgcgggcgcg
     2401 agtacggtat cgagttgaag agtttggcct gcgattgtcg acacgtcttt cagatcgaca
     2461 gcagcaaagc cacttgagct gattctgact gagtagcttc caggttcaag ttgaatcact
     2521 cggtatcgac cggcggcatc ggtgattgca ttgcgcttgg agtgagtctt caggagtgtg
     2581 acttcaactg cggcacccgg gatcacgccg ccgttttgat cttgcacaag gcctttgatg
     2641 gttgcggtgt cgagatcctg agcgggtacc tgaaagaagg acaagagagt aaagagaaac
     2701 aaaaacacga gtcgtgagga aacgcttttc atgaggatac tcctgcggct tacttcatga
     2761 ggttgccgct caattcgaac aaatgtttgg ttcttagctc cgcaggaatg gtgagttaag
     2821 cgaagctgtt tgcgtgcgcg actctagcac ttcatgaaac cgcaaacaag gtcttttagc
     2881 cacagatcga cgcagataat cacagataag aaaaaggagt gcacttggtt gttcatctga
     2941 ttatcagaac agaaattctt tcggctctga tctgtctacg tttgtgaaaa tctgtggctg
     3001 atctagcgcg aagctcggcg ccggagggcg gcgctgcggg ttaagggaac gagcgattcg
     3061 ctggtgcctt caggtggcgc gtcgaagttg gtgagttctt cggcgtgtgt ttgtaagtat
     3121 tggaagaagc gttcaaactc atgctgcatc gcatccatct tctcacgcat gttcaagatg
     3181 atttcgacgc cagcgaggtt aacgccaagg tcgcgagtta aggaaaggat caactcaagt
     3241 cgttctaaat cagggtcggt gtaaagacgg gtgttacctt ccgaacgcga aggcttcaac
     3301 agtccttccc tttcatagag tcttagcgtc tgcggatgaa tgccatactg ctccgcaacg
     3361 gcgctgatgg tgtaggtttt tggcttcctg ctc
//
LOCUS       DATCGC010000167         1163 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_434987, whole genome shotgun sequence.
ACCESSION   DATCGC010000167 DATCGC010000000
VERSION     DATCGC010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1163)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1163)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1163
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_434987"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..198
                     /locus_tag="VIJ87_01645"
     CDS             <1..198
                     /locus_tag="VIJ87_01645"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY5443181.1"
                     /translation="IPTESKDRVWEKFYRVVREGQEKDEESTGLGLSFVREVVEQHGG
                     SVALDSEEGRGSKFSFTLPRL"
     gene            complement(322..735)
                     /locus_tag="VIJ87_01650"
     CDS             complement(322..735)
                     /locus_tag="VIJ87_01650"
                     /inference="COORDINATES: protein motif:HMM:NF013052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SET domain-containing protein-lysine
                     N-methyltransferase"
                     /protein_id="HEY5443182.1"
                     /translation="MKLQLASGLTIKPSSIHGKGCFATKDFKRRHKIAEYAGEKISNA
                     EAKRRAHRKTLRICWVNNRWSLDGSRGGNGTHYINHSCTPNAFMQILYDHILFIALRD
                     IEPGEEITIDYETTLHPDDKRCICGAPSCRGTINK"
     gene            complement(868..>1163)
                     /locus_tag="VIJ87_01655"
     CDS             complement(868..>1163)
                     /locus_tag="VIJ87_01655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443183.1"
                     /translation="VVDAGTTPSQLAQRDLDQKLRFLPGFLEGKQETFNGRLDGVTVS
                     YEFTRTGKVMLGRTYYLQSDNRTIYALRFTGLKDKLSRIRNQTDQIARTFKLK"
BASE COUNT          294 a          269 c          282 g          318 t
ORIGIN      
        1 attccaacgg agtcgaaaga ccgagtctgg gaaaagttct atcgagttgt aagagagggt
       61 caggagaaag acgaagagtc caccggactc ggtttatctt ttgttcgtga agttgtcgaa
      121 caacatggcg gtagtgtagc tctggattcg gaagaaggac gcgggtcgaa atttagtttt
      181 actttaccaa ggctgtgaga aagtgatctc cgaaagtaat ctcagatctc agatttaaga
      241 tctcagatcg gagcctctga atttactaaa tccgcctaga tgaacgagtc tgagatctta
      301 gatttgagat ctgagatcgt cttacttatt tatcgttcct ctacaactgg gcgcaccaca
      361 gatgcagcgt ttgtcatccg ggtgaagtgt cgtctcgtaa tcaattgtta tctcctcgcc
      421 gggctcaatg tctctcaatg caataaacag aatgtggtca tagaggatct gcatgaaagc
      481 gtttggagtg caggaatgat tgatatagtg cgtgccattt ccaccacgac tgccgtccag
      541 gctccagcga ttgtttaccc agcaaatccg gagtgtcttc ctatgagccc gtcgcttcgc
      601 ctcggcattt gagatcttct cgcctgcata ctcagcgatc ttgtgtctcc gcttgaaatc
      661 cttagtcgca aaacatccct taccatgaat gctcgaaggc ttaatcgtga ggccggaagc
      721 taattgaagt ttcatttaaa tcggtctttg gtctttggcc ttggtcttag aagatcaact
      781 gaagaagcgc agtgtagcac cgcaaaaaag atttggccgc ccgaattaac cggcgaccaa
      841 acaattgaac cagttcatcg cagctgatca cttgagctta aatgttctcg cgatttgatc
      901 cgtttgattg cgaatgcgac ttagtttgtc tttgagacct gtgaaccgca acgcatagat
      961 tgtgcggttg tcgctctgga gataataggt tctaccgagc atcaccttgc ctgtgcgcgt
     1021 gaactcatac gacacggtca caccatcgag tcggccgttg aaagtttctt gcttcccttc
     1081 aagaaaacca gggaggaatc tcaacttttg atccaagtct cgctgagcaa gctgcgaagg
     1141 cgtcgttccg gcatcaacaa ctt
//
LOCUS       DATCGC010000168         3073 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_135290, whole genome shotgun sequence.
ACCESSION   DATCGC010000168 DATCGC010000000
VERSION     DATCGC010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3073)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3073)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3073
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_135290"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..894
                     /locus_tag="VIJ87_01660"
     CDS             <1..894
                     /locus_tag="VIJ87_01660"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY5443184.1"
                     /translation="HVAEIFLRDGQLILTQKGRNGYRDNSYESRNNAPDMTPLVILVN
                     ENTASASEIVAGAMQDHDRALIVGQTSFGKGLVQSIIPLEYGSGLTLTSAKYYTPSGR
                     LIQRDYSNGGFYDYYTHGGVNGANPKEQSKPSGPEKRTDTGRAVYGGGGISPDESVEP
                     KTINLSQRRLLSPTFAFARELVNGRVRGFESSRIANGIDYRHDLRPEEFKVSDSLYKA
                     FRDFVLSDPAFKVTPALLDKNRSFAEVQLRFNIVTAAYGRVTGDRVFIMQDDPQVAKA
                     LDVVPKARDLALGTKQSKAQQ"
     gene            1229..1654
                     /locus_tag="VIJ87_01665"
     CDS             1229..1654
                     /locus_tag="VIJ87_01665"
                     /inference="COORDINATES: protein motif:HMM:NF024252.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEY5443185.1"
                     /translation="MSRPVRALVNTEELGRAIRRRREELGLSLRDAANETAVSASTLS
                     RIENGTGKPDADNIARLTSWLDVPMERILSGRHHSQADAAKAVIYYPQEPTPEIVEAH
                     LRADRNLTPETAAALSELFRVAYNQFSRTDAEKTSKKRR"
     gene            1691..2284
                     /locus_tag="VIJ87_01670"
     CDS             1691..2284
                     /locus_tag="VIJ87_01670"
                     /inference="COORDINATES: protein motif:HMM:NF017885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ImmA/IrrE family metallo-endopeptidase"
                     /protein_id="HEY5443186.1"
                     /translation="MLASDLPPGDKWRKFELRALGLRDFACVRTDQPLNPFDLARFAN
                     LIVLSFDQVQGLSAAAREHLLGPAVEKWSGGACSLPNGMKLVILNPTHGRSRTNATLM
                     EEICHVFLGHEPNRLSIVTRDARGKVMSRDYRKADEEEAYGVGAAALVPYASLKRLLA
                     KGKASSEIASRFRVSRELVEYRMKVTRLWREYKSSAR"
     gene            2410..>3073
                     /locus_tag="VIJ87_01675"
     CDS             2410..>3073
                     /locus_tag="VIJ87_01675"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEY5443187.1"
                     /translation="MTEQLKDAPAQGLTTIDKLRMLLDITSKISRSLDLQEVLNLVMD
                     TLDSVIPYDAAGIFVVQCTDKELVAQGEEPCTFKAEAVRGYDIDELQDLHLKLGEGFI
                     GSVAVSGEPVISHDVRTDPVYVNARDRTRSEMVAPIISNDEVIGVFDLESDELNAYSD
                     DDLEVLMLLASQVAIIIEKVMLHEQLIEKKRLEGQLEVARQVQLELLPASDPVLEGFD
                     ISA"
BASE COUNT          785 a          734 c          836 g          718 t
ORIGIN      
        1 catgttgctg agatcttctt gcgggacggt caattgattc tgactcaaaa aggtaggaac
       61 ggttatcgag ataactctta tgagtcgaga aacaacgcgc cggatatgac gccattagtc
      121 atcctggtta atgaaaacac agcctcagcc tctgaaatcg ttgccggcgc gatgcaagat
      181 cacgatcgag cgctaatcgt cggccaaacc agtttcggta aaggactcgt acaaagcatt
      241 attccgctgg agtatggatc gggtttgact ctgacttcag cgaagtacta cacgccatca
      301 ggtcgactaa tccaacgcga ttactcgaac ggcggttttt atgactacta cactcacggt
      361 ggagtgaacg gcgcaaatcc gaaagaacag tcaaagccga gcggtcccga aaaacgaacg
      421 gacaccggtc gtgccgtgta tggcggcggc ggcatctcgc cggatgaaag cgtcgagcct
      481 aagaccataa acctgagcca gcggcgactg ttgagtccga cgttcgcgtt tgctcgcgaa
      541 ttggtgaatg gcagagtgcg tggctttgag tccagtcgta tagccaatgg aattgactat
      601 cgccacgact tgcgccctga agagtttaag gtttcggatt cgctctacaa ggcattcagg
      661 gattttgtgt tgagcgatcc cgcgttcaaa gttacacctg cgctgttgga taagaatcgg
      721 agttttgcgg aagtccaact gcgtttcaat atcgtgactg cggcttatgg acgcgtaact
      781 ggtgaccgag tgtttatcat gcaggatgat cctcaggtcg caaaggctct agatgtggtg
      841 ccaaaagctc gtgacctcgc attgggtacc aagcaatcga aagcacagca gtaaagctca
      901 tcacaagcaa ctggattaag gccgcgacgt tgttcgcggc tttttccttg tatgagcctc
      961 ggtcaaaagc aagtcaatac tacaacgctc caacgtatgg ctttggttgc ggctgtgccg
     1021 ctctcccgtg cggaaagcct ctggctttcc gtaactgata tcttggcaac gcggctatgc
     1081 cgccgagaca aagtctcaaa aacctatgga cccatgacgg aaagcggcag agccgcatac
     1141 gagaacctac ccgctgtttc aggtgtagca cacagtcttg cgtctaaaac ctccagtgtg
     1201 ttaagtttca atatggagga cgtagacaat gagtagacca gttagagctc tcgtgaatac
     1261 agaagagttg gggcgcgcaa ttcgacgccg gcgcgaagag ttgggtctta gtctgcgcga
     1321 cgcagcaaat gagacagcgg tctcggcttc tactttgtca cgaatcgaaa acggaacggg
     1381 caaacccgac gcagataaca tcgcaagact tacgtcctgg cttgatgtgc caatggagcg
     1441 aatcttgagc gggcgtcatc attcacaggc ggacgctgcc aaggcggtta tttactatcc
     1501 tcaggaaccc actcccgaaa ttgttgaggc tcaccttcgt gccgatcgaa atctaacacc
     1561 tgagactgct gcggctctct cggaattatt tcgcgtcgct tacaatcaat ttagtcggac
     1621 cgacgctgag aagacctcga aaaagcgtcg ctagatcagt tctcgcaccc tagttcgcta
     1681 tacttcccta gtgcttgcca gcgatttacc tccaggtgac aagtggcgaa agtttgaact
     1741 cagggctctc ggcctgcgcg acttcgcatg tgttagaacg gatcaaccgc tgaatccgtt
     1801 tgacctggca cggtttgcta atctgattgt cctaagtttt gatcaggtcc aagggcttag
     1861 tgccgcagcc cgcgagcacc tgcttggccc ggccgtggaa aagtggtcgg gaggggcatg
     1921 ctcgttaccc aatggcatga agctcgttat tctcaaccca acccatggaa gatcgcggac
     1981 gaatgcgacg ctgatggaag agatttgtca cgtcttcctc ggtcacgagc caaaccgctt
     2041 atcgatagtg accagggatg ctcgcggtaa agtaatgtcg cgggattatc gaaaggcgga
     2101 tgaagaagaa gcatacggcg taggagcagc ggccttagtg ccatacgctt cgctaaagag
     2161 actgttagca aaaggaaaag cctcgagtga gattgcgtct cgttttagag ttagccgtga
     2221 acttgttgag tatcgaatga aggtgacgcg cttatggaga gagtacaaat caagtgcgag
     2281 atagttaatg ctgtaacgtt agtgattgaa aatctagaga agttttcgtg aggcagcgac
     2341 aaactgaagt ttatcggaca taattatgtc ccggcccgtt gggcttgcct aagagcttta
     2401 ccgaacccca tgaccgaaca actaaaagac gcccctgcgc aaggtctgac cacgatcgac
     2461 aagttgcgca tgctgctgga tatcaccagc aaaattagtc gctcacttga ccttcaggaa
     2521 gtcttgaatc tggtgatgga cacactcgat tcggtgattc cttacgacgc ggcgggaatt
     2581 tttgtagtcc aatgcacaga caaggaatta gtcgcccagg gcgaagaacc ctgtacgttt
     2641 aaggccgaag ccgtaagagg gtacgacatc gacgaactac aagatctgca tctgaagtta
     2701 ggagaaggct ttatcggaag tgtggcggtc agtggagagc ccgtgatctc gcatgatgtc
     2761 cggactgatc cggtttacgt taatgctcga gatcgcacgc gctctgagat ggtagcgcca
     2821 attatttcaa acgatgaggt aattggtgtt ttcgatcttg aaagcgatga actaaatgct
     2881 tattcggacg atgaccttga ggtcttgatg ttattagcat cacaagtcgc gatcatcatc
     2941 gagaaagtga tgctgcacga gcagttgatt gaaaagaagc gactcgaggg acagttggag
     3001 gtggcgcgtc aggttcaact cgaactactt ccagcaagcg atcctgtgct tgagggattt
     3061 gacatcagtg cct
//
LOCUS       DATCGC010000169         1165 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_368414, whole genome shotgun sequence.
ACCESSION   DATCGC010000169 DATCGC010000000
VERSION     DATCGC010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1165)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1165)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1165
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_368414"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..583
                     /locus_tag="VIJ87_01680"
     CDS             <1..583
                     /locus_tag="VIJ87_01680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443188.1"
                     /translation="KAAPRCEINVSADGVYKKDSVVPKGRGIAAPRPLVPRTLVQQEV
                     CPDPKSPCNSAAKEFAPYQLSFQLPGKLTKGRTYTSLPFYAVLLKTYDAESCDADDHT
                     ESIERERLKIQLAYPHNKLFASYSCPNLDAVDYSFSGKMDSTGERALIMTFIAVYAGK
                     TQAEGSNFLQYVRTVYPNATLKQMTASYEILDQ"
     gene            828..>1165
                     /gene="lepB"
                     /locus_tag="VIJ87_01685"
     CDS             828..>1165
                     /gene="lepB"
                     /locus_tag="VIJ87_01685"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: protein motif:HMM:NF021981.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEY5443189.1"
                     /translation="MFGIRRRKPPPFGGVHIDDDKDIQVHRPDASSRDDLWSEARLLL
                     RDLIFALMIAALVVVFIVQPVKVEGTSMLPRLHDGERIFVNKLIYYDEYRWAPKLDRG
                     DIVVFWFPDDP"
BASE COUNT          286 a          303 c          294 g          282 t
ORIGIN      
        1 gaaggctgca ccccgttgcg agatcaatgt ctcggccgat ggtgtctata agaaggacag
       61 tgtggttccg aagggacgtg gcattgcagc ccctcgcccg ttagtaccgc gaaccctcgt
      121 acaacaagaa gtttgtccgg atccaaagtc tccctgtaac tcggcagcga aagaattcgc
      181 tccttatcag ctgtcgtttc agttgccagg aaagttgacc aaaggacgaa cttacacgtc
      241 acttccgttc tacgcagttc tgctaaaaac ttacgacgca gagtcttgcg acgccgatga
      301 tcataccgag agcatcgaaa gggagcggtt gaagattcag ctcgcctatc cgcacaacaa
      361 actctttgcc tcttacagtt gtcccaacct tgatgccgtt gattacagct tttcggggaa
      421 aatggattcc accggcgaac gcgcgctcat catgacgttc atcgcagttt acgcaggaaa
      481 gactcaagcg gaaggaagta actttttgca gtacgtccga actgtgtatc cgaatgcgac
      541 tctcaaacag atgaccgcga gctacgagat cctcgatcag tagaacgacc ttaccgcgaa
      601 gcggtaaatc cttccgctcc ttcggaggca agcgcaaacg cggatggcca aggattagac
      661 taagcaatca cgataatttc ggggaattgt cttttggctt tgatctgaat catccgccct
      721 catctgcgac aaattctctt ggtttgacaa gcgagagtac gaaagctaac ctcaaaatcg
      781 accgagcagc ttgtgcccag cggtttgcca gatctctgtt gatccctatg tttggaatac
      841 gaagacgcaa gccaccaccg tttggtggcg tgcatatcga cgacgacaaa gacatccagg
      901 tacatcgacc ggatgcctca tcgcgcgacg acctgtggtc ggaagctcgc ttgctgcttc
      961 gcgatttaat cttcgcgctc atgattgcgg ctttggtggt cgtctttatc gtgcaaccgg
     1021 tgaaagtgga aggtacgtcg atgttgccgc gtctgcatga tggcgaaaga atctttgtaa
     1081 acaaacttat ttactacgac gagtatcgtt gggctcccaa actggatcgc ggtgatatcg
     1141 tcgtgttctg gtttccagac gatcc
//
LOCUS       DATCGC010000170         1678 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_68793, whole genome shotgun sequence.
ACCESSION   DATCGC010000170 DATCGC010000000
VERSION     DATCGC010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1678)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1678)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1678
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68793"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..847
                     /locus_tag="VIJ87_01690"
     CDS             <1..847
                     /locus_tag="VIJ87_01690"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding
                     protein/permease"
                     /protein_id="HEY5443190.1"
                     /translation="DAMKAEVDKAIERIIVDGTLEKILRKWKLWNDAQVEFQTSVKTK
                     TPPAVALEMTNSSFNWGGAFWRLTQAALVTVLIALGSMIIAVVLGLPLAVGQWNGPRW
                     LRILCTIYVEFFRGTPVLVQLLFLYFGLPVIGIAMPGWLTALVGLGLNYAAYESQVYC
                     AALDAIPKGQWEASYSLGMSPLLAFRRIILPQAFRIALPPMTNDFVSLFKDTSVAFAI
                     SVWELATAYRELANASGQFLLLGLTVSLFYLAMSLPMAQVARLLEQRLSSRGIERSDE
                     AEVAA"
     gene            844..1584
                     /locus_tag="VIJ87_01695"
     CDS             844..1584
                     /locus_tag="VIJ87_01695"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEY5443191.1"
                     /translation="MIQVTNLRKRFGDNEVLKGINFEVAPQTILGIIGASGSGKTTLL
                     RCLNGLETISDGSVTCSDVQLESGLSTAEYKRRVRALRLKVGTVFQHFYLFPHLSVVG
                     NIIEAPVHVLKTAKKSAETEAFELLESVGMKHAARRYPESLSGGEQQRVAIARALAMH
                     PALLLLDEPTSALDPRRIASLRGLLRGFAEKGHTMIIISHSIGFLGGVSDSLLYMEGG
                     LVVEHGPTDQVLNSPKDPRVKEFISQAE"
BASE COUNT          393 a          425 c          466 g          394 t
ORIGIN      
        1 cgacgcgatg aaagcagagg tcgataaagc tatcgaacgg atcatcgttg atggcacgct
       61 cgaaaagatc ttaaggaagt ggaaactgtg gaacgacgct caggttgaat ttcaaacttc
      121 ggtaaagacc aagacgccgc cggcagtcgc gcttgaaatg acaaactcct cgttcaattg
      181 gggtggcgct ttttggcgac tgactcaagc ggcattggtg acggtcctca tcgcactcgg
      241 ctcaatgatc attgctgtag tgttgggatt gccactcgcc gtcgggcagt ggaacggacc
      301 gcgctggcta cgaatacttt gcaccatcta cgttgaattc tttcgcggca cgccggtatt
      361 ggtacaactg ctctttctgt actttggctt gccggttatc ggcattgcca tgccgggctg
      421 gctgacagcg ctggtcggac tcggtcttaa ctatgcggct tatgagtcgc aggtctattg
      481 tgcggcgctc gacgcaattc cgaaaggaca atgggaagct tcttattctc tcggcatgag
      541 tccgctactc gctttcaggc ggattatttt gccgcaggct tttcgcatcg cgctgccacc
      601 aatgacgaac gattttgtgt cgctgttcaa agacacctcg gttgccttcg ccatttcagt
      661 ctgggagctg gcaactgcgt atcgcgaact ggcgaacgcg tcgggccaat tccttttact
      721 cggcctcacc gtttcactgt tctatctcgc aatgagtttg ccaatggcgc aagtcgcacg
      781 tcttttagag caacgactca gcagtcgagg cattgaacga tccgatgaag cggaggtggc
      841 ggcatgattc aagtcacaaa cctacgcaaa cgattcggcg acaacgaagt tttgaaaggg
      901 atcaactttg aagtcgcgcc acaaacgata ctaggaatca tcggagcatc gggaagcggc
      961 aagaccacac tcctgcgctg tctcaacggg ttggagacaa tcagcgatgg ttcagtcacg
     1021 tgctcggatg ttcaacttga atcagggctc tcaactgccg aatacaagcg acgagtgaga
     1081 gcgctgcgac tcaaagtagg aactgtgttt cagcatttct acttgttccc tcacctttca
     1141 gtcgtgggaa acattatcga agcacctgtg cacgtgttga aaacggccaa aaagagtgcg
     1201 gagactgagg cgtttgaatt gttggaatca gttgggatga aacacgccgc ccgtcgatat
     1261 cccgaatcac tctcaggcgg cgagcagcag cgtgttgcga tcgctcgagc attagcgatg
     1321 cacccagcgt tgttgttact cgacgaaccg accagtgcac tcgatccacg gcgcattgca
     1381 agcctacgcg gacttctacg cggattcgcg gagaaaggcc acacgatgat catcatctcc
     1441 cactcaatag gttttctcgg aggagtgtcg gacagcttgc tttatatgga aggtggcctg
     1501 gtggtcgagc acgggccaac ggatcaagta ctcaactcgc cgaaagatcc gcgtgtgaag
     1561 gaatttattt cgcaggcaga gtgagtggag tggggtggca atgaggtcag taccataacg
     1621 cggtagcgta tggcttgtgc gtattcagac tccgagatca aacacaagcc atacgcta
//
LOCUS       DATCGC010000171         1247 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_102210, whole genome shotgun sequence.
ACCESSION   DATCGC010000171 DATCGC010000000
VERSION     DATCGC010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1247)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1247)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1247
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102210"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..819)
                     /gene="prmC"
                     /locus_tag="VIJ87_01700"
     CDS             complement(<1..819)
                     /gene="prmC"
                     /locus_tag="VIJ87_01700"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: protein motif:HMM:TIGR00536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0018364 - peptidyl-glutamine methylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HEY5443192.1"
                     /translation="MFNRHLLPEMGEGLVDSIHLFGYRYRRHYRLSCMNSKAVNTPSI
                     AQAILEASQILRKTGIPEPRREAGSLLAHVIDKDRTFLISHAEDHLAIEEFQRFSNWI
                     RRRALGEPLQYITGRQDFYGREFIVTPAVLIPRPETELLVESALELTGEASHICDVGT
                     GSGCIAVTLLCERTDASCVALDVSEAALKIAKQNALDNGVNNRLRFIVSDCFESLPAD
                     LEPFDLIVSNPPYISADVIPDLQREVKDHEPIVALSPGSDGLAIIRRLIDESPAF"
     gene            946..>1247
                     /locus_tag="VIJ87_01705"
     CDS             946..>1247
                     /locus_tag="VIJ87_01705"
                     /inference="COORDINATES: protein motif:HMM:NF039183.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5658 family protein"
                     /protein_id="HEY5443193.1"
                     /translation="MGTLSKSLLLFSLNWLDAQLTLVWIKANVATEGNALMARVLEHG
                     EIPFIGVKLLIGAFAAYILYRCAHLPIAKHGMTLVLTIYCGLMLVHAATGCAALGWR"
BASE COUNT          290 a          321 c          315 g          321 t
ORIGIN      
        1 aaacgctggc gactcatcaa tcaagcgccg aatgatggcg agcccgtcag agcctggact
       61 caacgcaacg attggttcgt ggtcttttac ttcgcgctga agatccggaa ttacatctgc
      121 ggagatgtag ggcgggtttg aaacgatcag gtcgaaaggc tccaagtctg ccggcagcga
      181 ttcgaagcaa tctgaaacaa tgaatctcaa ccgattattc actccgttgt cgagtgcatt
      241 ctgttttgcg atcttcagtg ccgcttccga cacgtcgagg gccacgcaag aagcgtccgt
      301 ccgttcgcac aacaacgtca ctgctatgca ccctgaacct gtccccacgt cacaaatgtg
      361 tgaggcttca ccagtcaatt ccaacgctga ctctacaagc aattctgttt caggacgggg
      421 aatcaaaact gccggagtaa ctatgaactc tcgaccatag aagtcttgcc gtccggtgat
      481 gtactggagc ggttcgccca gtgctcttcg ccgaatccag ttgctaaacc tttgaaactc
      541 ttcgatagcg aggtgatctt cagcgtgact gatcagaaag gttcgatcct tatcgatcac
      601 gtgagcgaga agagatccag cttcacgacg cggctcagga attccagtct tccgcagtat
      661 ctgcgacgct tcaagtatcg cttgcgcgat ggaaggtgtg ttgacagctt ttgagttcat
      721 acaactgagc ctataatggc gccgataacg ataaccgaat agatgaatcg aatcgactaa
      781 accttccccc atttccggaa gcaggtgtcg attgaacata tctctaagat acttagaacg
      841 agtctcgttc ctcccgtgaa cgtcatgaac ctccgaacat cagttcgggg gttctggcgt
      901 tattaggggc cagagtttaa caacgttggc agaggggtga tcatcgtggg aacgctatcc
      961 aagagtttat tgttattttc gttgaactgg cttgacgctc aattgactct cgtttggatc
     1021 aaggcgaacg tcgccactga aggcaacgcc ctgatggctc gcgttctcga acatggcgaa
     1081 attcccttta tcggcgtgaa gctcctcatc ggcgcgtttg ctgcttacat cctttatcgt
     1141 tgcgctcatt tgccaattgc caaacatggt atgacgctgg tgctcactat ctactgtggt
     1201 ttgatgttag ttcacgctgc gactggttgt gccgcgctcg gttggcg
//
LOCUS       DATCGC010000172         2628 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_435139, whole genome shotgun sequence.
ACCESSION   DATCGC010000172 DATCGC010000000
VERSION     DATCGC010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2628)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2628)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2628
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_435139"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2223)
                     /locus_tag="VIJ87_01710"
     CDS             complement(<1..2223)
                     /locus_tag="VIJ87_01710"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY5443194.1"
                     /translation="MVSKKIGLFFPLMAVAVGLLLSATALGQSTATVQGTVTDSKGSV
                     VPSATVVVKNKATSAERTAQTDADGNYQVAALPVGIYTIEVRANGFKTQLADQVSIQV
                     AQTIVQNFQMDVGAISEQVLVTSDVPVIETATTSVGTVINQRTVQEIPLNGRHFVDLG
                     LLIPGSVTPPQNGFLTAPLRGQGSFGLNTAGGREDTVNFMINGINLNDMVQNQITFQP
                     SINTVQEFKADNSTFSAEYGRNSGAIVNIATRSGANDYHGEFFEFFRNDALDARNFFE
                     RTTQPAPFKRNQFGFNVGGPVNLPHFGQGGPIFGYEGKNKTFFFFSYEGTRQRQGLTI
                     SGVTVPTEAQRAAVTDPVIKNLLPLIPHANVGASGFAGSATAPVNIDQWTTDISHTLG
                     ANDRLHGYYAIQRDQRGEPTLQGNTVPGFGDTRTSRRQIFTFNETHTFGSNVVNEARF
                     GFNRIHILFDPNAHLNPLDFGIKNGVTTDLGLPQMAVTGTALNLGGPSGFPQGRSDTT
                     YVVSDTLNYLRGNHSLKFGGELRRFYNNNTTKDTGTFAFANMAAFLAGTANTFNVTLG
                     DVSTAIAQGALGVFVQDNYKLRSNLTLELGFRWDYLMSPTERFNRFVDYVPEINSLVQ
                     VNNGIAPVYHTNWKNFHPRVGFSWDPFKDGKTSIRAAYAILADQPVTNLVSPNGSNPP
                     FATAVALPANTTTQLSNATSVAVPGATVSPTSSDPEFDNAYIQSWNLNVQREVGHGFG
                     V"
BASE COUNT          655 a          672 c          678 g          623 t
ORIGIN      
        1 cactccgaac ccatgtccta cttctcgctg cacattcaag ttccacgatt gaatgtacgc
       61 gttgtcgaat tctggatctg acgaagtcgg tgacacggtt gcccccggca ctgcgacaga
      121 cgtcgcgttt gaaagctgcg tcgtagtgtt cgctggcaag gcaaccgccg tcgcaaatgg
      181 cggattacta ccgttcggac taactagatt cgttacaggc tggtcagcca ggatggcgta
      241 tgcagcacgt atcgaagtct tcccatcctt gaaaggatcc cacgagaaac ctactcgtgg
      301 atgaaagttc ttccagtttg tatggtagac cggagcaatc ccgttgttca cttgaacgag
      361 cgaattgatc tcgggaacat agtcgacaaa gcgattgaat ctttccgtcg gcgacatcaa
      421 gtagtcccaa cgaaatccaa gttccaaagt tagattcgat cgcaacttgt agttgtcttg
      481 cacaaacact ccgagagcgc cttgagcaat tgcggtggac acgtctccca aagtcacgtt
      541 gaaagtgttc gctgttccag caagaaacgc cgccatgttt gcgaatgcaa acgtgccggt
      601 atctttggtg gtgttgttgt tgtagaaccg gcgaagttca ccgccaaact tgagcgagtg
      661 attgccgcgc aggtagttca gcgtgtcaga aacaacgtaa gtcgtgtccg aacgaccctg
      721 gggaaaaccg gagggaccgc caaggttcag ggcggtacca gtcacggcca tctggggcaa
      781 accaagatct gttgtgacac cgttcttgat cccgaagtcg agcggattca aatgagcgtt
      841 gggatcgaac aagatgtgga ttcgattgaa cccaaatcgt gcttcgttga ctacattaga
      901 tccgaaggtg tgtgtttcat taaaggtaaa gatttgacgt cgcgaagtgc gcgtgtcgcc
      961 aaaacccgga acggtattgc cctggagagt gggttcacca cgttggtcac gttggatcgc
     1021 atagtaaccg tgtaggcgat cgttagcgcc gagcgtatga ctaatatcag ttgtccactg
     1081 atcgatattt accggcgcag ttgctgaacc ggcaaagccg ctggcaccaa cattcgcgtg
     1141 tggaataagc ggcaagaggt ttttgatcac aggatccgtc accgctgcac gttgagcctc
     1201 ggtgggaact gtcactccgg agatcgtcag cccttgtcgt tgacgtgttc cctcataact
     1261 gaaaaagaag aacgtcttgt tctttccctc gtagccgaag attggtccgc cttggccgaa
     1321 gtggggaagg tttacaggtc caccaacatt gaaaccaaac tgatttcgtt tgaagggggc
     1381 cggttgagtt gtccgctcaa agaagttcct cgcgtccagg gcatcgttcc ggaaaaactc
     1441 aaagaactcg ccgtgataat cgttcgcccc tgaacgcgtg gcgatgttca cgattgcacc
     1501 tgagttccga ccatattcag cgctaaaagt ggagttgtca gccttgaact cctgaactgt
     1561 attgatggat ggctgaaacg taatctggtt ctgaaccatg tcgttaaggt tgattccatt
     1621 aatcatgaaa ttaaccgtat cctcacgacc gcccgccgtg ttcaagccaa acgatccttg
     1681 tccgcgaaga ggcgcggtta agaagccatt ctgaggcgga gtaacagaac ctgggatcaa
     1741 cagaccgagg tcaacaaagt gacgcccgtt aagcggaatt tcctgaacag ttctttgatt
     1801 gattacggtg ccaacggaag tggttgctgt ttcaataact ggcacatccg aagttactaa
     1861 aacctgttcg gagatcgccc ccacgtccat ctgaaaattc tgaactatgg tttgcgcaac
     1921 ctgaatcgat acctggtcgg ccaactgcgt cttgaacccg ttggcgcgca cctcaattgt
     1981 gtagatccca actggtaatg ccgctacctg ataattcccg tcggcgtcgg tttgtgcggt
     2041 gcgttccgcc gacgtcgctt tgtttttcac caccacggtg gcgctcggca ctacagaacc
     2101 tttcgaatca gtgacggtac cttgcaccgt cgccgttgat tgccccagcg ctgtagcgct
     2161 taaaagcaga ccgaccgcca cggccatcaa cgggaagaag agtccgatct ttttgctaac
     2221 cataagacta acctcctaaa cattaccggc ggtcaaacac actgcgaccc caaccaggat
     2281 tacgaatacg cgcttccaag tttgtgtact tgatgaggcg agcattgcca cgttcgagcc
     2341 tcaggatatg ccgacagtcg ttacgttgtt ttgggggagc taaaagggcg gtagcaaaaa
     2401 aggggccgtt aactccccct taaacggcga ggatttgcta acaaaactta tggctcagag
     2461 tccgatatct cagccattga tccaaaaaca acaagctgat ccgaaaacga caaaaacaga
     2521 tcttagattg cgtcaccatc gccgcaggaa ttcacgcaaa tccctgtaca tttctgcgaa
     2581 ggactctgca caaaacagga tggcctggta gtgagttgga tcgtagtc
//
LOCUS       DATCGC010000173         1476 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_35775, whole genome shotgun sequence.
ACCESSION   DATCGC010000173 DATCGC010000000
VERSION     DATCGC010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1476)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1476)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1476
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35775"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..255)
                     /locus_tag="VIJ87_01715"
     CDS             complement(<1..255)
                     /locus_tag="VIJ87_01715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443195.1"
                     /translation="MCGIVGYVGNKQVVPLIIDGLRKLEYRGYDSAGIAVVNDGHDLE
                     IRRAEGKLRNLEETIRLSPIDGTYGIGHTRWATHGRPTEEN"
     gene            complement(276..>1476)
                     /gene="glmU"
                     /locus_tag="VIJ87_01720"
     CDS             complement(276..>1476)
                     /gene="glmU"
                     /locus_tag="VIJ87_01720"
                     /EC_number="2.3.1.157"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: protein motif:HMM:TIGR01173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003977 - UDP-N-acetylglucosamine
                     diphosphorylase activity [Evidence IEA];
                     GO_function: GO:0019134 - glucosamine-1-phosphate
                     N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HEY5443196.1"
                     /translation="EVEKVVRDDIGELARFAVQAQQRGTGDAVESARGLLENSDSLLV
                     LLSGDVPMIRAETLRKLVEHHQSTNSDCSILSVRLENPTGYGRVIRNEQNSFVRIVEQ
                     KDASDEERQIKEINSGIYCFDTRKLFEALKSVKPANHQGEYYLTDVPEILLSEGGVVT
                     CFVHHDSREVSGINTRAELAEFENLLRRNTIRGLMVDAGVTFIDPSHSYISPEAKLGR
                     DCVIYPDVSIEGKSVIGEGCLIRSGARITNSILGDNVTVKDHSLIVDSEVGSNCSVGP
                     FAHLRMNAKLEDKATVGNFVEVKKSKIGRGTKAMHLTYLGDATIGENTNIGAGTVTCN
                     YDGVRKHETIIEDNVKIGSDTMLVAPVRVGARSVTGAGSVVTKDVPPDSLVAGVPATV
                     KKSTKQS"
BASE COUNT          334 a          398 c          348 g          396 t
ORIGIN      
        1 gttttcttcg gtgggacgac catgagtggc ccaacgagtg tggccgattc cataagtgcc
       61 atcgatcggg ctcagtcgta tcgtctcttc aagattacgc agcttgccct cagcacgccg
      121 aatttcgaga tcgtgtccat cattcacgac cgcgatgccg gctgaatcgt agccgcgata
      181 ctcgagcttc cgtaggccgt cgatgatcag cggaacgacc tgtttgtttc cgacataccc
      241 gactattcca cacatgccag ttgattagct cccactcagg actgttttgt actcttctta
      301 actgttgcag gaacgccggc gactaatgaa tccggcggaa catcttttgt gacgactgaa
      361 ccagcgccgg tgactgacct tgctccaacc cgcaccggcg cgaccaacat cgtatccgac
      421 ccgatcttaa cattgtcttc gatgatcgtt tcatgcttgc gtacgccatc gtagttgcac
      481 gttacagttc ccgcgccgat gtttgtgttt tcaccgattg tcgcgtcgcc aaggtaagtc
      541 aaatgcattg ccttggtgcc gcgtccaatt tttgatttct ttacctcgac aaagttgccg
      601 accgtagctt tatcttcgag tttcgcattc atgcggagat gtgcgaaagg acccacggaa
      661 cagttcgatc cgacttctga atcaacgatg agggaatgat cttttaccgt cacgttgtcg
      721 ccgagtattg aatttgtgat gcgagcaccg gaacgtatca aacatccttc gccaataacc
      781 gatttacctt cgatcgatac gtctggataa atcacacaat cgcgtccaag cttggcttca
      841 gggctaatgt atgaatgtga cgggtcgata aaggttacgc ctgcgtcgac cattaatccg
      901 cgaattgtgt tgcgacgaag caggttttca aactcagcga gctccgctct ggtattgatt
      961 ccagaaactt cgcgggaatc atggtgaaca aaacaagtaa cgacgccacc ctctgataac
     1021 aggatctccg gaacgtctgt taagtagtac tcaccttggt gatttgcagg cttcactgac
     1081 ttcagtgcct cgaaaagttt ccgagtatca aagcaataga tgccggagtt aatctccttg
     1141 atttgtcgct cttcgtcact ggcgtccttt tgctcaacaa ttcgcacaaa agagttctgc
     1201 tcgtttcgga ttaccctgcc atagccagtg ggattctcca gtcgtacgct cagtatcgaa
     1261 caatcggagt ttgttgattg gtggtgctcg acgagttttc tgagcgtttc cgcgcgaatc
     1321 atcggcacat cacctgacag gagcaccaaa agcgaatccg agttttcaag taagcctcgc
     1381 gcagattcga ctgcgtctcc ggtacctcgc tgttgggcct gaacggcaaa ccgtgcaagt
     1441 tcgcctatat cgtctcgaac aaccttttca acttct
//
LOCUS       DATCGC010000174         1459 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_202209, whole genome shotgun sequence.
ACCESSION   DATCGC010000174 DATCGC010000000
VERSION     DATCGC010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1459)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1459)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1459
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_202209"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1459)
                     /locus_tag="VIJ87_01725"
     CDS             complement(<1..>1459)
                     /locus_tag="VIJ87_01725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443197.1"
                     /translation="DQLLEQLDALKSQFGTANARKINALLRRLARLRIDDVDSLVRFH
                     ELLLFVRAYPHNASVVQQTEKLLRDIPDRVEHLRELDVDVSALEHPEVSGIAGLSVTD
                     TFTFPIVSWLAQLKPAALSFYWEWFEDENRIGEMWPTFLPLLEEDAFVEAHIPFREWL
                     RNARGRQTEVRWLIGRFRRLRLTETEQAQLYNSQKLYLEWRYSYRESRTGLRVPIKRI
                     FFHEDPLIPRRDVRLEEEFNRPTPPTRKLSLSKGTLALDVARNASTVRYRELYGFTNG
                     DPRSVYQMSLGRGVELVVFTLPPEKRLPLRAYHSAMIYKNGVPIGYFEGLSLFERMES
                     GFNLYYTFRDGETAWLYARILAVMKHLAGVTAFTLDPYQIGFDNEEGIESGAFWFYRK
                     LGFRSMSGEIHKLTKNEEEKIAKRKNYRTTATTLRKLAAAPMILELDDSKKGDWDHFQ
                     LRQMGFAVQRLMAEKFSGDAERMREGAVRTISSLLG"
BASE COUNT          354 a          382 c          376 g          347 t
ORIGIN      
        1 ccccaagagg ctcgaaatcg ttcttacggc cccttcacgc attcgctctg catctccact
       61 gaacttctcc gccatcaggc gctgaaccgc gaaccccatc tggcgcagtt gaaaatgatc
      121 ccaatcaccc ttcttagaat cgtccagttc cagaatcatc ggagccgcgg cgagcttgcg
      181 taatgtcgta gccgtcgttc gatagttctt gcgcttcgcg atcttttctt cttcgttctt
      241 tgtaagtttg tgaatttcac cgctcatcga tcgaaagccg agcttgcgat agaaccagaa
      301 agcccctgat tcaattcctt cttcgttatc gaaacctatt tgataaggat cgagcgtaaa
      361 ggcagtcacg cccgcgagat gtttcataac cgcaagaatg cgcgcataga gccaggcagt
      421 ttcaccgtca cgaaaggtgt agtagagatt gaatccactc tccatgcgtt cgaaaagcga
      481 aagcccttca aagtaaccaa tcgggacccc gttcttgtag atcattgcag agtgataggc
      541 gcgaagcggt aagcgttttt caggaggcaa tgtaaacacg accagctcaa cgcctctacc
      601 gagagacatt tgatagaccg atcgaggatc gccattggtg aatccgtaga gttcgcgata
      661 acggaccgtc gaggcgttac gagcgacgtc gagtgcgagg gtcccttttg agagtgaaag
      721 ttttcgagta gggggcgtgg gtcgattgaa ttcctcttca agtcgaacat cacgacgcgg
      781 aattaacgga tcctcgtgga aaaatatcct tttgatcggc acgcgaagtc cagttcgcga
      841 ttcgcgataa gagtaacgcc actccaggta aagtttttgt gagttgtaga gttgcgcctg
      901 ctcagtttcc gtcagtctca atcttctgaa gcgtccgatc agccaacgga cttccgtctg
      961 acgtcctctt gcgttacgca accactctcg aaaagggatg tgagcttcga caaacgcatc
     1021 ttcctcgaga agcggcagaa atgttggcca catctctcca atccggtttt catcctcgaa
     1081 ccattcccaa tagaacgaaa gcgctgcggg cttcagttgc gccaaccaac taacgatcgg
     1141 aaaggtaaag gtgtcagtta cggataggcc cgcgataccc gacacttcgg ggtgctcaag
     1201 tgcagagaca tccacgtcga gttcgcggag atgctccacg cgatcaggga tatcacgcaa
     1261 cagcttctcg gtttgctgca caacggatgc gttatgcgga taggcgcgga cgaagaggag
     1321 aagttcgtga aagcgaacta acgagtcgac gtcatcgatt ctcagtcgcg cgagccgacg
     1381 caatagcgcg ttaatcttgc gagcgtttgc ggttccaaat tggctcttga gtgcgtcgag
     1441 ttgttcgagt aactggtcg
//
LOCUS       DATCGC010000175         1633 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_335420, whole genome shotgun sequence.
ACCESSION   DATCGC010000175 DATCGC010000000
VERSION     DATCGC010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1633)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1633)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1633
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_335420"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..341)
                     /locus_tag="VIJ87_01730"
     CDS             complement(<1..341)
                     /locus_tag="VIJ87_01730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443198.1"
                     /translation="MTRENLLFAIIGILFGFIVGFIFASTMSQKNAMSAATVGAGSSQ
                     SLPADHPPVGSQDAVNDPAKIREQVTSSIAKAKNEPQNFDAQMQAAELYYQIQRYDQA
                     IEFLLKANQLKP"
     gene            complement(368..1342)
                     /gene="ccmI"
                     /locus_tag="VIJ87_01735"
     CDS             complement(368..1342)
                     /gene="ccmI"
                     /locus_tag="VIJ87_01735"
                     /inference="COORDINATES: protein motif:HMM:TIGR03142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome biogenesis protein CcmI"
                     /protein_id="HEY5443199.1"
                     /translation="MILFWLICAGLLVIALAFLLPTLFERSKTSQEGSEAERKQANIA
                     VYRDQLAELKLDLQNGIVSQEQFDQDTEEIERRVLEDISTSRKDSKATSTNNRTTAYT
                     TEEIKRRALEGLSTSRKDSKTTSTNNRATAYTVALAIPLIAVVFYMKVGSPQAISSAA
                     TVAPESAPMMGGAGQRTQAQIEANVQKLADKLKANPSDPAGWVMLARSYNSMQRYGEA
                     TGAYAKATELSPNDADLWAEYAFATAMAGDRKLEGKATELINQALKVDPENAKALQLS
                     GTAAFEAKDYKKAIEIWQKVLSRVPAGSDVAQAITERINEAKTLSGSK"
     gene            complement(1339..>1633)
                     /locus_tag="VIJ87_01740"
     CDS             complement(1339..>1633)
                     /locus_tag="VIJ87_01740"
                     /inference="COORDINATES: protein motif:HMM:NF015853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome c-type biogenesis protein"
                     /protein_id="HEY5443200.1"
                     /translation="EDLRREIREQIKAGKSDKEIISFLTARYGQFILYRPQVTPTTYL
                     LWFGPFIILIAGFFILFRYIRQRRDAIVAEPLTSEERRLAGELLSAKSGKEAL"
BASE COUNT          336 a          403 c          435 g          459 t
ORIGIN      
        1 ggcttgagtt gattggcctt caagaggaat tcgattgcct ggtcatagcg ctggatttga
       61 tagtagagtt ccgccgcttg catctgagcg tcaaagtttt gaggctcgtt cttagccttt
      121 gcaatcgatg aggttacttg ctcgcgaatt tttgccggat cattgactgc gtcttgcgag
      181 ccaaccggag gatgatcagc gggaagtgac tgtgatgaac cggcgcccac ggttgcagca
      241 gacattgcat tcttctgact catcgtactg gcgaagatga atccgacgat gaatccaaac
      301 aggattccga tgattgcgaa aagtagattc tctctggtca ttagttactc aagtaggtcg
      361 ttaatgttca cttgctgcca gacaatgtct tggcttcgtt tattcgttct gtaatcgcct
      421 gggctacgtc tgagcccgct ggaactctgc taaggacttt ctgccagatc tcaatcgcct
      481 ttttgtaatc tttggcttcg aaagcagcgg tccctgatag ttgcaacgcc ttagcatttt
      541 ccgggtcaac tttgagcgcc tggttgatca attcggttgc tttaccttcg agtttacgat
      601 caccagccat tgcagtggca aatgcatatt cggcccaaag gtcggcgtca ttcggactga
      661 gttcggtggc ctttgcataa gcgccggtag cttcaccgta tcgttgcatc gagttgtaag
      721 aacgtgccag cattacccag cctgcggggt cagaagggtt cgctttcagt ttgtcagcca
      781 gcttttgaac attggcttcg atctgcgctt gcgtgcgttg gccggcgcca cccatcatcg
      841 gagccgactc gggcgctaca gttgcagcgc tggagatcgc ttggggcgat cccaccttca
      901 tatagaagac gacggcgatc agtggaatgg cgagcgccac tgtgtaggcg gtggcccgat
      961 tgttcgttga ggttgtcttc gagtcctttc ggctggtgct taacccttcc aacgcgcgtc
     1021 gtttaatttc ttccgtcgtg taggcggtgg ttcgattgtt tgttgaggtt gccttggagt
     1081 cctttcggct ggtgcttatg tcttccaata ctcgtcgttc aatctcttcc gtgtcttgat
     1141 caaactgctc ctggctaaca ataccgttct gcaagtctag ttttagttct gccaattgat
     1201 cgcgatagac ggcgatgttt gcctgtttcc gctcggcttc ggaaccctcc tgcgaagtct
     1261 tgcttcgctc gaacagtgtc ggtaacaaga aggcgagcgc gatgacaagg aggccggcgc
     1321 aaatcaacca gaagagaatc atagcgcctc ctttcctgat ttggcggaga gcaactcccc
     1381 tgcgagacgc cgctcttcac ttgttaatgg ttcagctacg attgcatctc gtcgttggcg
     1441 aatgtaccgg aagagtataa agaaacccgc gatcaggata atgaagggtc caaaccaaag
     1501 caggtacgtt gtgggagtca cttgcggacg ataaaggatg aactgaccat aacgtgctgt
     1561 caaaaacgag atgatttcct tgtcactctt accggctttg atctgttcgc gtatttcgcg
     1621 acgcaaatct tca
//
LOCUS       DATCGC010000176         1297 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_3134, whole genome shotgun sequence.
ACCESSION   DATCGC010000176 DATCGC010000000
VERSION     DATCGC010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1297)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1297)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1297
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3134"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1297
                     /locus_tag="VIJ87_01745"
     CDS             <1..>1297
                     /locus_tag="VIJ87_01745"
                     /inference="COORDINATES: protein motif:HMM:NF013444.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443201.1"
                     /translation="EEVLAIKPDMVFLWDEAWYAYNRFSPFHRMRSAMGACEALREKY
                     ATEAYRAEYNEFKKKHGKIDPKNEKQLLNTHLLPDPDAVKIRVYATTSTHKSLSCFRQ
                     GSYIMVNDDCWESTEASFKEAFFAHTSTSPNLQLIASLDVARRQAELEGYELVGRSIE
                     LSLILRREVNKHPLISKYFRIATNAQMVPAEHRASGFEDFHADGVSWKTIYDAWATDE
                     FVLDPTRITLLCGSAGFDGTQFKGLLASKFDIQLNKTSRNSVLLQTNINNTRSDIAYL
                     IKVLADISRELDRRLSTDNEEKAAFDARVKSLVTDVPDLPNFSRFHDAFREDPRGKTN
                     EGDMRTPFFLAYDAENCTHVRLNSKEIDDMVKNGQAVSAKFVIPYPPGFPIMVPGQVI
                     TKETIDFMRKLDVKEIHGYQAALGLELIKPEKLGASRRKN"
BASE COUNT          315 a          382 c          338 g          262 t
ORIGIN      
        1 ggaagaggtg ctcgcgatca aaccagacat ggtcttcctc tgggacgagg cctggtatgc
       61 ctacaaccgt ttctcgcctt tccaccgcat gcgttcggcc atgggtgctt gcgaagccct
      121 gcgcgagaag tatgccaccg aagcataccg cgctgagtat aacgaattca agaagaagca
      181 cggtaaaatt gacccaaaga atgagaagca actactcaac acgcatctgt tgcccgatcc
      241 ggatgcggta aagattcgag tctatgcgac gacctcgacc cacaagtcgc tctcctgctt
      301 ccgtcagggg tcctacatca tggtgaacga cgattgctgg gagagcacgg aggcgtcatt
      361 caaagaggcg ttctttgccc acaccagcac ctcacccaat ctccagttga tcgcatcact
      421 cgacgtggcc cgccgacaag cagaactcga agggtatgag ctggtgggcc gttcgatcga
      481 gctttccctg atcctacgcc gtgaggtgaa caaacatccg ctcatctcca agtacttccg
      541 catcgcgacc aacgcccaga tggtgcccgc cgagcaccgt gccagcggat tcgaagactt
      601 ccatgcggat ggtgtgagct ggaaaaccat ctatgacgcc tgggcgaccg acgagtttgt
      661 tttggatccc actcgtatca ctctgttgtg cggttccgcc gggtttgatg gcacccagtt
      721 caaggggttg ctggcaagta agttcgacat ccagctcaac aagacctcac gcaacagcgt
      781 tcttcttcag actaacatca ataacacccg cagtgacatt gcctacctga tcaaggttct
      841 cgcggatatc tcgcgcgaat tggatcgcag gctctccact gataacgagg agaaggcggc
      901 gtttgacgcc cgcgtaaaga gcctggttac cgacgttccc gatcttccca acttcagccg
      961 cttccatgac gccttccgcg aagatccccg cggcaagaca aacgaagggg acatgcgcac
     1021 acctttcttc ctcgcctatg acgcggagaa ctgcacgcat gtgaggctca acagcaagga
     1081 aatcgatgac atggtcaaaa acggccaggc tgtctcggca aaatttgtta tcccttatcc
     1141 cccgggcttc ccgatcatgg tgccgggcca ggtcattacg aaggagacca tcgacttcat
     1201 gcgcaagctc gatgtgaagg aaatccacgg ctaccaggca gccttgggcc tggaactgat
     1261 caagccggaa aagcttggcg ctagcagaag aaaaaac
//
LOCUS       DATCGC010000177         1489 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_135525, whole genome shotgun sequence.
ACCESSION   DATCGC010000177 DATCGC010000000
VERSION     DATCGC010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1489)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1489)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1489
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_135525"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1489)
                     /locus_tag="VIJ87_01750"
     CDS             complement(<1..>1489)
                     /locus_tag="VIJ87_01750"
                     /inference="COORDINATES: protein motif:HMM:NF019334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat-containing protein
                     kinase family protein"
                     /protein_id="HEY5443202.1"
                     /translation="FTPEYASPEQLRGLPITTTSDVYALGVVLYELLSGHRPFSLASR
                     SAEEIARMITTSEPLKPSVVITRHEAMPHADDGHHSLTPEGISQTREGNIDKLRRRLV
                     GDLDNILLKALRKEPERRYASVQDLSADLQRHLTGLPVLAREDTFAYRAGKFIQRNKA
                     SVAAAAVVAITLISATIVTTWQATVAKRERAKAERHFKEVRNLTNSFLFDFHDSIADL
                     NGATQAREMVVKKAQEYLSTLAQEAGDDRELLWELSTAYLKLGDVQGRPGFSRTGDTA
                     GALKSYEQSLDIRRRLVTLEPNNTEYQLGLAVTLSRFGPINQVLGNPSVSAERMRESM
                     EIADRLLPQSHDLTTFQAAFRAPAFLGDALSELGNYDEALAMYQKSLSIADRMKNESL
                     PPKEVTLRFIVALERLGFVYGIKGQWQKAVDADQDMLTRTEELLAMDPTSLDYQRDKA
                     TALDHVGDSFRGVKNYPKALEYGQRGLAMYEDILRKDPQNARTKK"
BASE COUNT          328 a          394 c          392 g          375 t
ORIGIN      
        1 tctttctttg tccgcgcatt ttgtggatcc ttccggagaa tatcttcgta catcgccaga
       61 ccgcgctggc cgtattccag agccttagga taattcttaa caccgcgaaa cgaatcgcca
      121 acatgatcca gggccgttgc cttgtctcgc tgatagtcaa gactcgtcgg atccatcgca
      181 agcaattctt ctgtcctggt cagcatgtcc tgatctgcgt caaccgcctt ttgccattga
      241 cccttgatgc cataaacaaa gccgagccgt tctaaggcga cgataaaacg aagggtgacc
      301 tcttttgggg gaagcgattc atttttcatg cggtccgcga tggacaaaga tttttgatac
      361 atcgccagcg cttcgtcata gttgcctaac tctgacaacg cgtcaccgag aaaagcaggg
      421 gctctgaaag cagcttgaaa ggttgtcagg tcatgcgatt gcggcaagag cctgtccgct
      481 atttccattg actcccgcat gcgttcagcg gagacgctcg ggttaccaag cacctgattg
      541 attggaccaa agcgcgaaag agtaacagca agaccgagtt gatactccgt attattcggc
      601 tcaagcgtta caaggcgtcg tcgaatatcg agtgattgtt cgtaagactt taacgcgcct
      661 gccgtgtcgc ccgtgcgcga aaagcctggg cgtccctgca catcgccgag ttttaaatat
      721 gcggtcgaaa gttcccagag caattcacga tcatcacccg cctcttgcgc cagagtgctt
      781 agatactcct gcgctttctt aacaaccatc tcccgggcct gagttgcgcc gttcaaatcg
      841 gcgatcgagt cgtgaaagtc gaacagaaaa gagtttgtga ggttacgcac ttccttaaag
      901 tgtcgttccg cttttgcccg ttctcgtttt gctacggtgg cttgccaggt ggtcactatg
      961 gttgcgctga tcagagtgat tgctaccacg gcagccgcag caacgctggc cttatttctt
     1021 tgaatgaact tgccggctcg ataagcaaac gtatcttcgc gtgccaggac tggtaatcca
     1081 gttaggtggc gttgaagatc agctgacaaa tcctgcacgg acgcgtaacg gcgttcaggt
     1141 tctttccgca aagcctttaa gaggatgtta tctagatcac ccacaagacg gcggcggagt
     1201 ttatcgatgt ttccttctcg agtttggctg attccttccg gagttaggga gtgatgtccg
     1261 tcgtcggcgt gaggcatcgc ttcatgtcgc gtgataacga cactgggctt gagtggctcg
     1321 gaggtcgtta tcatccgcgc aatctcttcg gctgagcggc tggcaagact gaacgggcga
     1381 tggccactca acaactcgta caggacaacg cctaacgcat agacgtcact ggtcgttgtt
     1441 atcggcaagc cgcgcaactg ttccgggctc gcgtactcgg gagtgaaca
//
LOCUS       DATCGC010000178         1506 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_236160, whole genome shotgun sequence.
ACCESSION   DATCGC010000178 DATCGC010000000
VERSION     DATCGC010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1506
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236160"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..264)
                     /locus_tag="VIJ87_01755"
     CDS             complement(<1..264)
                     /locus_tag="VIJ87_01755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443203.1"
                     /translation="MKTPTRKFGNKNRQGDRTGVLRRPRSETTFDQSDLWIAFGLAIS
                     TLALYAQVVSHQFINFDDDLYIWNNPTVSSGVTLKGIAWAFTSF"
     gene            complement(301..>1506)
                     /locus_tag="VIJ87_01760"
     CDS             complement(301..>1506)
                     /locus_tag="VIJ87_01760"
                     /inference="COORDINATES: protein motif:HMM:NF024299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5443204.1"
                     /translation="TFESGRVDSSRRISIKKLIIEKVPFAVVAVGWSILTFALQKEAG
                     IVGQQGIGFRIANAFVSYAVYFFDSFWPQNLAVLYPYPLTLPWGQLAAAVVSLFLVSG
                     LCFLRRKTSPHLVAGWLWYLGMLVPVIGIIQVGAQARADRYTYLPQIGLWFALSWELV
                     VLTKAWPFRHRLLSISAAAVLVVLSACTWNQTKVWRSSESLWRHTLAVTSDNFVAHYN
                     LGHVLGQQRKYDEAILHFNEVLRMSPDFFDALLNMGITLFEQGKLDEAITYYRRALGV
                     QPQSSKAHMQLALALVQQGKNDEALQEFRKAAELGPEDPNVRTNLGLMLARQGKLSEA
                     TSQLEEALKLNPNNAEAHNNLGLVFLMAKEPEKSIPHFTTALRLKPELTVAQDNLKRA
                     QKQIDGRSK"
BASE COUNT          395 a          398 c          360 g          353 t
ORIGIN      
        1 aaaactcgtg aatgcccaag ctattccctt gagcgttaca ccgctgctca ccgtcgggtt
       61 attccagatg tagagatcgt catcaaagtt gatgaactgg tgactaacca cttgagcgta
      121 aagagcgaga gtagagatag ctaaaccgaa cgcgatccaa agatcgcttt gatcaaaagt
      181 cgtttccgaa cgcggtcgcc taagcactcc cgttctatcg ccctgccgat tcttgtttcc
      241 gaacttacga gtcggcgttt tcatctgctg ggcgtcccaa ccatatcact aaaacgagcc
      301 tcactttgac cgcccatcaa tctgcttctg cgctcgtttc aagttgtcct gcgccacggt
      361 aagttccggt ttcaagcgca acgccgtagt aaagtgcgga atacttttct caggctcctt
      421 cgccatcagg aaaacgaggc ctagattgtt gtgtgcttct gcgttgttag gattgagctt
      481 caacgcctct tcaagttgtg aggttgcctc tgaaagtttg ccttggcgcg ctaacatcag
      541 cccaaggttt gtgcgaacat tgggatcctc tgggccaagt tctgcggctt tgcgaaattc
      601 ctgcagcgct tcatcattct tcccttgctg cacaagcgcc aaggcgagct gcatatgggc
      661 cttggaggat tgcggttgaa caccaagagc tcggcgatag taggtaatcg cctcgtccag
      721 cttgccttgt tcgaagagag taatccccat gttgaggagt gcgtcaaaga agtcgggact
      781 cattcgtaag acttcgttaa aatggaggat ggcctcgtca tacttgcgtt gctgtccgag
      841 gacgtgaccg agattgtaat gcgcgacaaa attgtccgaa gtcacggcga gcgtgtgtct
      901 ccagagtgat tcgctgcttc gccagacctt agtttgattc caagtacagg cactgagtac
      961 aactaagacg gcagctgcag aaatcgacaa gagccgatga cgaaaaggcc atgctttagt
     1021 tagaacaaca agctcccaac tcagcgcaaa ccagagacca atttgcggaa ggtaggtata
     1081 acggtctgcg cgcgcctgcg ctccaacctg aattatacca atcaccggca ctaacattcc
     1141 caaataccac aaccaaccgg ctactagatg aggtgaagtt tttctcctga gaaaacacaa
     1201 acctgaaacg agaaaaagcg ataccactgc tgccgccaac tgtccccagg gcagagttaa
     1261 cgggtacgga tacaaaaccg cgagattctg cggccaaaaa gaatcgaaga agtaaactgc
     1321 gtaactaaca aatgcattgg cgattcgaaa accgattcct tgttgaccta caattccggc
     1381 ctctttctgg agagcaaagg tgagaatact ccagcctaca gcgacgaccg cgaaaggaac
     1441 cttctcgatg atcagcttct taatgctaat cctacggctc gaatcaaccc tccccgattc
     1501 aaacgt
//
LOCUS       DATCGC010000179         1094 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_102349, whole genome shotgun sequence.
ACCESSION   DATCGC010000179 DATCGC010000000
VERSION     DATCGC010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1094)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1094)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1094
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102349"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(199..>1094)
                     /locus_tag="VIJ87_01765"
     CDS             complement(199..>1094)
                     /locus_tag="VIJ87_01765"
                     /inference="COORDINATES: protein motif:HMM:NF016817.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="succinylglutamate desuccinylase/aspartoacylase
                     family protein"
                     /protein_id="HEY5443205.1"
                     /translation="LSIPVAVFHGAKPGPVLALVSGAHGTEYASIVALEKVIGLLNPA
                     EMSGTVIVVPLINIPSFEQKVPHVNPVDRKSMNRFYPGKMDGTQTERASFLITKQVVE
                     QCDHLIDLHGGDLDESLRPYGYWTKTGIEKQDEVSREMLMAFGLDHIIISTDRPKDPQ
                     ASRYLENTATTRGKPSITVEAGYAGTVETDDVNALVNGCLSVMRYLKLLPGAPTAIEH
                     PVWIEKVLTVTSEQTGMFYPLVKRGTWVEQGMKLGYVTDYLGKVIFEARAPVSGVVLY
                     VCSVPSMTKSATIANIGVVVR"
BASE COUNT          258 a          316 c          268 g          252 t
ORIGIN      
        1 gtagctagcc tggcaacaac gggcgccctc ttctgggacc gcaggagtcc tcgcctgctt
       61 gcaacgttac aagcttttgc aaggttagta gcctcccgcg cacgttagca ggcgaggacg
      121 cctgcggtcc cagaagaggg cgcccgttat tgccaggcta gctactaaag gtaatcgata
      181 aaagactgag gaccactctc accgcaccac cacgcctatg ttcgcaatcg tcgcgctctt
      241 cgtcatcgac ggcactgaac aaacatacag cacaacacct gacacgggcg cgcgtgcttc
      301 aaagattact ttgccgagat aatccgttac gtacccaagc ttcatcccct gttccaccca
      361 tgtgccacgc tttaccaatg gatagaacat tccagtttgt tcactggtca ccgttaacac
      421 tttttcaatc caaacaggat gctcaatcgc agttggcgcg ccgggcagta gtttcagata
      481 gcgcatcacg ctcagacatc cgttcaccaa agcgttgacg tcgtcggttt cgacagtacc
      541 tgcgtaacct gcttcaaccg taattgaggg tttgcctcgc gtggtcgcag tgttttccaa
      601 ataacgcgaa gcctgcgggt ctttcggccg gtcagttgaa atgatgatgt gatcaagtcc
      661 aaacgccatc aacatctcgc gtgatacttc gtcctgcttt tcgatcccgg tctttgtcca
      721 ataaccatag ggacgaagac tctcgtcgag atcacctccg tgaagatcga tcaagtgatc
      781 acactgttcg acgacctgtt tagtgatcaa gaaagaggcg cgctctgttt gtgtaccgtc
      841 catcttgccg ggatagaagc ggttcatact cttgcgatca accggattga cgtggggcac
      901 cttctgctca aacgaaggaa tattgatcag tggaacaacg atcacggttc ccgacatctc
      961 ggctggattc aaaaggccga tgactttttc gagcgccaca atcgacgcgt actcggttcc
     1021 gtgcgctccc gagacgagcg ccaaaaccgg acccggcttt gcgccgtgaa agactgcgac
     1081 gggaatactc aaac
//
LOCUS       DATCGC010000180         2812 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_135559, whole genome shotgun sequence.
ACCESSION   DATCGC010000180 DATCGC010000000
VERSION     DATCGC010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2812)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2812)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2812
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_135559"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..887)
                     /gene="ligD"
                     /locus_tag="VIJ87_01770"
     CDS             complement(<1..887)
                     /gene="ligD"
                     /locus_tag="VIJ87_01770"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR02778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-homologous end-joining DNA ligase"
                     /protein_id="HEY5443206.1"
                     /translation="MSSKKVPTREYHPATVTRSEDPGRKQTSKIPSIKLPKNKVNVEV
                     EVNGRVVKLTNLDKLFWPKLGITKRDLIQYYINIAPVLLPHLKDRAMVMKRYPNGAGE
                     DFFFMKRAPSPRPAWIEICAIEHSSGNIIDFPMIQDLASLMWVINLGCIDLNQWYARC
                     DDVDRPDYLHFDLDPVPGASFETVVEAALFLKTAFDALKIPSYPKTTGSKGIHIYIPI
                     EYGPTQKQVWTFAKQFSHAVAGEAPDLLTAIYQVSKRPKGRVLVDYNQNAWGRTLASV
                     YSVRPKDRPTVSTPVRWSEL"
     gene            complement(1014..1259)
                     /locus_tag="VIJ87_01775"
     CDS             complement(1014..1259)
                     /locus_tag="VIJ87_01775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443207.1"
                     /translation="MARGWESKAVADQIEEGNQPRGPQAPEITPEERQKKERLASLLL
                     SRSRLLDQLERATQPAHRNMLLNGLKAIEKEIEEEGR"
     gene            complement(1262..2557)
                     /locus_tag="VIJ87_01780"
     CDS             complement(1262..2557)
                     /locus_tag="VIJ87_01780"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: protein motif:HMM:NF002772.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008878 - glucose-1-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0005978 - glycogen biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase"
                     /protein_id="HEY5443208.1"
                     /translation="MPASPKLLAVILGGGAGNRLFPLTQQRSKPAVPLGGKYRLVDIA
                     LSNCINSDILRTFVLTQYNSASLNRHIAQTYRFSHFSNGFVEILAAEQTPESPQWFQG
                     TADAVRQVLPHIRDWGIDTLLILSGDHLYHMDYRDFLTQHYNSNADVTVSVIPCEAKA
                     ASEFGLLKTDESGRIIEFKEKPKGEELLSMQVDTSKLGLDATEAARRPFLASMGIYVF
                     KYESLERLLEQDCNWVDFGREIIPAAIKAGHVQAHMFDGYWEDIGTIGAFFRANLDLT
                     SKIPKFNLFNAEAPVYTRARYLPPSKIEDTQVDDSIVGDGCIINGAKITNCVVGLRSR
                     ISKGVQIDSSYIMGADYYQTLEDMRKDLQSGVPRVGIGEGSVIRRAIIDKNARIGTNT
                     RLLNDAGVVEADSDDKSYYIRDGIIIVPKNAIIKDGTVI"
BASE COUNT          665 a          712 c          702 g          733 t
ORIGIN      
        1 agttcactcc acctcacggg cgtcgaaaca gtcggacgat cttttggccg aaccgagtag
       61 actgaagcca gcgttcttcc ccacgcgttc tggttgtagt cgactagcac ccttcccttt
      121 ggacgtttcg acacttgata aatggcagta agaaggtcgg gtgcttcacc ggcgaccgcg
      181 tgcgagaact gctttgcaaa agtccatacc tgtttttgag tcgggccata ctcgattgga
      241 atgtagatat ggattccttt cgagccagtc gtctttggat agctcggaat cttcaaggca
      301 tcaaacgcag tcttcaaaaa caaagcggct tcgacaaccg tttcgaaaga agctcccggc
      361 accggatcga gatcaaagtg caaataatct ggccgatcaa cgtcatcaca tctcgcgtac
      421 cattggttta gatcaatgca cccaagattg attacccaca tcaacgacgc gagatcttga
      481 atcatcggaa agtcgataat gttccctgac gaatgttcaa tggcgcagat ttcaatccag
      541 gcgggtcgag gtgagggagc gcgcttcatg aagaagaagt cttcccctgc cccgttcgga
      601 taacgcttca tcaccatcgc gcgatctttg aggtgaggta aaagtacagg tgcgatgttg
      661 atgtaatact gaattagatc ccgcttggtg ataccgagct ttggccagaa caacttgtcg
      721 agattggtaa gtttgacgac gcgaccatta acctcaacct caacgttaac tttgttcttg
      781 ggtagcttga tcgatggaat ctttgaggtc tgcttccgtc cggggtcctc gcttcgagta
      841 actgtcgcag ggtgatattc acgggtcgga accttcttgg aggacattta gttaaagtat
      901 gactttagcg aattggccga cgccgcttga tagttaaagt gaactgctaa gcaatagcga
      961 ggaaggtttc gggtgttggg tatcaggtgt caggcttacc cgacccccaa cagctaccgt
     1021 ccttcttctt caatctcttt ctcgatcgcc ttcaatccat tcagcaacat atttcggtga
     1081 gccggctgag ttgctcgctc aagttgatcg agcaatcttg accgggacag cagaagtgaa
     1141 gccaagcgtt ccttcttctg tcgttcttct ggcgtgatct ctggagcctg tggcccccgg
     1201 ggctggttcc cttcctcgat ctgatcggct actgctttgc tttcccaacc tcgagccata
     1261 actaaatcac ggtgccatcc ttgatgattg cattctttgg aacgatgata atgccgtcgc
     1321 gtatgtagta cgacttatca tcgctatcag cctcaactac cccagcatca ttcagcaagc
     1381 gcgtgttagt tccgatgcga gcattcttgt cgataatagc ccgtctgatg acgctcccct
     1441 cgccgattcc tactcgcgga actccactct gaagatcctt tcgcatatct tctaaagttt
     1501 ggtagtaatc ggcacccatg atgtaagacg aatcgatctg cacgcccttc gagatgcgac
     1561 ttcgtaaacc tacgacgcag ttcgtgatct ttgcaccgtt aatgatgcag ccgtcaccca
     1621 cgattgagtc gtcaacctgt gtgtcttcaa ttttcgaggg cggcaagtaa cgcgcacgcg
     1681 tatagacagg cgcctcagcg ttgaagagat tgaacttcgg aatcttgctt gtgaggtcga
     1741 ggttggcccg gaagaaagcc ccgattgttc cgatgtcttc ccagtaacca tcaaacatgt
     1801 gagcttgcac gtggcccgct tttatagcag caggaataat ctcacgtcca aagtcaaccc
     1861 aattgcagtc ctgctccagc aaacgttcaa gactctcgta cttgaaaacg tagatcccca
     1921 tcgaagccag gaaaggtctt cgtgctgcct cggtcgcatc cagaccgagc ttagaagtgt
     1981 cgacctgcat tgataacaac tcttcgccct ttggtttttc tttgaactca atgatccgtc
     2041 cactctcgtc ggtcttcaac agtccgaact cactggcggc ttttgcctca catggaatta
     2101 cggaaacagt gacgtcggcg tttgagttgt aatgctgcgt aagaaagtcg cgataatcca
     2161 tgtgatagag atgatcgccg gagagaatga gcagggtatc gattccccag tctctaatgt
     2221 gtggcaacac ttgtcttact gcatccgccg tcccttgaaa ccattgagga ctctcaggag
     2281 tttgctcagc ggcaaggatt tcgacaaagc catttgagaa gtgcgagaag cgatacgttt
     2341 gcgcaatgtg ccggttgaga gaggcggagt tgtattgagt aagaacgaac gtacgcagaa
     2401 tgtcggagtt gatgcagtta gaaagcgcta tatcaaccaa ccggtatttg ccgccgagag
     2461 gaacagctgg tttggatctt tgttgagtta gcggaaacaa tctgtttccc gctcctccac
     2521 cgagaatcac agccaacagt tttggactcg caggcatagg gcgtcaccgg actttgattt
     2581 gggattgcga gtgaagaata gtcggaaagc tacgcgcctg ccaagatgca tcagcggcag
     2641 gagatgttca aatttgaaat gctccgcgta gtctctgcgt tctctgcgac tctgcggtgg
     2701 gtggcgtgcg cctcttttca ccgccgagtt taactgcacg ttcgacaagc aagtagttaa
     2761 tgaaactttg gaatagttac gcctctttgg aatagttacg ccgctttgga ac
//
LOCUS       DATCGC010000181         2243 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_435277, whole genome shotgun sequence.
ACCESSION   DATCGC010000181 DATCGC010000000
VERSION     DATCGC010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2243)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2243)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2243
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_435277"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1075)
                     /gene="zwf"
                     /locus_tag="VIJ87_01785"
     CDS             complement(<1..1075)
                     /gene="zwf"
                     /locus_tag="VIJ87_01785"
                     /inference="COORDINATES: protein motif:HMM:TIGR00871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004345 - glucose-6-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HEY5443209.1"
                     /translation="MSTNPTQFEPISLPKADPCVIVIFGATGDLTRRKLMPALFRLTC
                     EGCLDEVHILCVGRSQISDEEFRKTVREGLNQSNKVEQCSDENWELFTKRIYYHTGEI
                     DNDDTYTAIASRLEELATQGASRNCLFYFATPPTLATTIVEGLGKAGLAKRDQGWSRI
                     VIEKPFGHDLESAKKLNAEIAAVFQEDQVYRIDHYLGKDTVQNILVFRFGNAMFEPIW
                     NRNYVDFVEITAAEGLGVGSRAGYYEGVGALRDMVANHLLQLLTLTAMEPPVAFDADS
                     VREEKVQVLRSIRRLKPEEVAVRTVRAQYNSGTIDGEQVKSYKDEDKVDHNSTTETYS
                     AIEFHVSNWRWSGVPFYVRTGKRL"
     gene            complement(1129..2139)
                     /gene="gnd"
                     /locus_tag="VIJ87_01790"
     CDS             complement(1129..2139)
                     /gene="gnd"
                     /locus_tag="VIJ87_01790"
                     /inference="COORDINATES: protein motif:HMM:TIGR00872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004616 - phosphogluconate dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="decarboxylating 6-phosphogluconate
                     dehydrogenase"
                     /protein_id="HEY5443210.1"
                     /translation="MELGMVGLGRMGANMVRRLLKGEHQCVVYDRSAEAVQAMVNEGA
                     VGAASLAEFIAKMQTPRAIWLMIPAALVDSTLEELSSLVSADDIIIDGGNSYYIDDIR
                     RSQELKTKNIHYVDVGTSGGVWGLERGYCQMIGGEAEVVTHLDPIFKTLAPGRATVPP
                     TKGRSDEGTAQEGYLHCGPAGAGHFVKMVHNGIEYGLMAAYAEGLNVLHHANVGQLDH
                     EKDAETTPLRYPDHYQYDFNLADITELWRRGSVVASWLLDLTAIALAEQPKLEDFSGR
                     VSDSGEGRWTIAAAIEEGVPVPVLSAALFQRFSSRGEADFANKILSAMRLQFGGHSEK
                     KH"
BASE COUNT          481 a          592 c          583 g          587 t
ORIGIN      
        1 cgagtcgttt ccccgtgcga acgtaaaatg ggacaccact ccaccgccag tttgagacgt
       61 gaaactcaat cgccgaatat gtctcggttg ttgagttgtg gtcgactttg tcctcgtctt
      121 tgtacgactt cacctgctcg ccatcgatcg tgcctgagtt gtactgtgcg cggacggtgc
      181 ggaccgcaac ttcctccggc ttcaaacgtc gaatcgagcg caacacttgg accttttctt
      241 ctcgtaccga atccgcgtcg aacgcaaccg gtggttccat ggccgtaagg gttagtagct
      301 gaagcaggtg attggcgacc atgtcgcgta acgcgccgac gccttcgtaa tagccggcgc
      361 gagatccaac accgagtcct tctgcggcag tgatttcgac gaaatcaacg tagttccgat
      421 tccagatcgg ttcgaacatc gcatttccaa aacggaacac gaggatgttc tgaacagtgt
      481 ctttgccgag gtagtgatcg attcggtaga cctgatcttc ctgaaacact gcagcgatct
      541 cggcgttgag tttcttcgca gattcgagat catggccgaa cggcttttcg atgacaatgc
      601 gactccatcc ctgatcgcgt ttggcaagcc cggctttgcc tagaccttcg acaatcgtgg
      661 ttgcaagggt tggcggcgtg gcgaagtaaa acaaacaatt ccggctcgca ccttgtgtag
      721 caagttcttc aagtcgtgaa gctattgcgg tgtaggtgtc gtcgttgtct atttccccgg
      781 tgtggtaata gattcgtttg gtaaatagtt cccagttttc gtcactgcac tgttcgactt
      841 tgttcgattg gttcaagcct tctcgaactg ttttgcggaa ttcttcgtct gagatttgac
      901 tgcgaccgac gcagagaatg tgtacttcgt cgaggcatcc ttcgcacgtg agccgaaaca
      961 acgcaggcat gagtttgcga cgcgttaagt cgccggttgc tccgaagatc acgatgacgc
     1021 acggatcagc tttgggaagt gagattggtt cgaattgggt tgggtttgtc gacaaagcgg
     1081 tgtttcctgt tggtaattgc aggtttcaaa tttcaaataa cgcaattctt aatgtttctt
     1141 ctcgctgtgt ccgccaaact gtagcctcat tgctgacagt atcttgtttg caaagtcagc
     1201 ttcgcctcga gaactaaatc tttggaacag agctgcactc aaaacaggaa ccggcacccc
     1261 ctcttcgatc gctgccgcaa tcgtccaacg accttcgcct gaatctgaga cgcgcccgga
     1321 aaagtcttct aacttcggtt gctcagccaa cgcgatcgcg gtgagatcaa gtaaccacga
     1381 cgcgactaca ctgccacgcc gccaaagttc tgttatgtct gcgaggttaa agtcgtattg
     1441 gtaatggtcc ggataacgga gcggcgtggt ttctgcatct ttttcatggt cgagttgccc
     1501 aacgttcgca tgatgcagga cgtttaagcc ttcggcgtag gcggccatca atccgtactc
     1561 aatgccgttg tgaaccatct ttacaaaatg gcccgcgccg gcaggtccac agtgcaggta
     1621 accttcctgt gcagttcctt cgtcgcttcg tcctttggtt ggcgggacgg tggcgcgacc
     1681 tggagcgagc gttttgaaga tcggatcgag atgagtgacg acctcagctt caccgccgat
     1741 catctgacag tagccacgtt ccaatcccca gacaccgcca cttgtgccaa catcgacata
     1801 atgaatgttc ttggttttga gttcttgaga gcgacggatg tcgtcgatgt aataagagtt
     1861 tccgccgtcg atgatgatgt cgtcagcgct aacaagactc gagagttctt ccagcgtgga
     1921 atcgacaagt gcggcgggta tcattagcca gattgctcgc ggcgtctgca tcttcgcgat
     1981 gaactcagcg agcgacgccg caccgactgc gccttcgttt accatagcct gaacggcctc
     2041 agcactgcga tcgtaaacaa cgcactggtg ttctcctttt aacaagcgcc gcaccatgtt
     2101 ggcccccatg cgtcccagac ctaccattcc gagttccatt cagtcgctcc ttaatattga
     2161 attgtgttgg cattgtaact tgagcttggc aagtaagcac tcagccgcag atttgcgttg
     2221 tccgataagc ttcagagggt aat
//
LOCUS       DATCGC010000182         1320 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_236210, whole genome shotgun sequence.
ACCESSION   DATCGC010000182 DATCGC010000000
VERSION     DATCGC010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1320
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236210"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            19..>1320
                     /locus_tag="VIJ87_01795"
     CDS             19..>1320
                     /locus_tag="VIJ87_01795"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY5443211.1"
                     /translation="MFSDQFRRGESEKGKLAGVKGSKLISGLSDVAWKAFQSVNQRLP
                     EGESIRPNWAPGPLLKSYERSAPPLGFPRETDSLCPTCVKEVRNAVISGEVQLETLMN
                     EHPGEIKAQIVEENGQVVMRKTCPKHGEFVDVMATDPAFLERIESLFFGRDFKAAEDS
                     HIHRHGTSNIKFGRGAVLTVDLTNRCNMMCNPCFMDANQVGYVHEPTYEDTKAILDRA
                     VSFKPKRQIIILFSGGEPTLSPYYLEAVAYAKKVGFYRILAATNGIRFAEDIEFCKAA
                     KEAGQHGVYLQFDGVSEEKNKHRGVGNLFDVKLRAIENLASVGIKVTLVTTIVNTINN
                     DGIGQIVEFAAKNIDKVQTIAFQPVSFTGRDEDVADDVRIKQRYTLAGMTSDLRDQTG
                     GNLQPLRDWFPLSSYSAFTSVMDMLQGADAPWGWSSCNCHPN"
BASE COUNT          335 a          330 c          351 g          304 t
ORIGIN      
        1 ccaagaggag acagaacttt gtttagcgac cagtttcgaa gaggtgaatc agaaaagggc
       61 aagctcgccg gggtgaaagg ttccaagctg atctcgggtc tttcggatgt agcgtggaaa
      121 gcttttcagt cagttaacca gcgacttccg gaaggtgaat cgattcgccc caactgggct
      181 cccggaccgc ttctcaaatc ctacgaacgc agtgcaccgc cgctgggttt tccgcgtgag
      241 actgacagtc tgtgtccaac ctgtgtaaaa gaagttcgca atgccgtcat cagtggtgag
      301 gtgcaactcg agaccttgat gaacgaacat ccgggtgaaa tcaaggccca gatcgttgaa
      361 gagaacggtc aagtcgtgat gcgaaaaact tgcccgaagc atggtgagtt tgtggatgtg
      421 atggcgactg accctgcgtt tctggaaaga attgagtcac tctttttcgg tcgtgacttc
      481 aaagcagctg aagacagcca catccatcga cacggaactt cgaacataaa gtttgggcgc
      541 ggcgccgtgt tgacggttga cttaaccaac cgctgcaaca tgatgtgcaa tccttgcttc
      601 atggatgcga accaggttgg ttatgttcac gaaccaacat acgaagacac aaaagcgatc
      661 cttgatcgcg ctgtgtcatt caagccaaag cgccagatca tcatcctctt ctccggcggt
      721 gagccaactc tgtcaccgta ttacctcgaa gcggtcgcgt atgcgaagaa ggttggcttc
      781 tacagaatcc ttgcagcgac aaatggaatt cgcttcgcag aagacattga gttttgcaaa
      841 gcagctaagg aagctggaca gcacggtgtt tacctgcagt ttgacggggt cagcgaagag
      901 aagaacaaac atcgcggcgt cggcaacttg tttgacgtaa agcttcgcgc aattgagaac
      961 cttgccagtg ttggaatcaa agtcacgctc gtcaccacga tcgtcaatac catcaacaac
     1021 gatggcatcg gtcaaatcgt cgagtttgcg gcgaagaaca tcgataaagt tcagacaatc
     1081 gcgttccaac cagtttcatt tactggtcgt gatgaagacg tggctgacga cgttcgcatc
     1141 aaacagcgtt acacccttgc cgggatgacc agcgacctgc gcgatcaaac tggcggcaac
     1201 ctgcaaccgc ttcgtgattg gtttccactc tcgtcgtatt cagccttcac tagtgtgatg
     1261 gacatgttgc agggcgctga tgctccctgg ggttggtcgt cgtgtaattg ccatcccaac
//
LOCUS       DATCGC010000183         1116 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_368702, whole genome shotgun sequence.
ACCESSION   DATCGC010000183 DATCGC010000000
VERSION     DATCGC010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1116
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_368702"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(83..>1116)
                     /locus_tag="VIJ87_01800"
     CDS             complement(83..>1116)
                     /locus_tag="VIJ87_01800"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY5443212.1"
                     /translation="VNIDLRRDQVKTYGVSEARILSLLRNAYSQNYLYLIKKPEDQYQ
                     VILEIEDEARSNPEDLARLYIRSDDGKRLVPLGELVTWNTTLGPQTVNHLNQFTSVTL
                     FFNLKPGVALGDATNFITKSAAEIVPPGVRAELVGEAQTFSRTVTSLTFLMALAVFVM
                     YVILAILYESYVHPLTVLSTLPTALVGGLLTLIIFGQEASLYAFVGMFMLMGIVKKNG
                     IMIVDFARQRVDAGESAEQAIHDASMDRFRPILMTTLAAVFGALPIALGFGADGASRR
                     PLGLVVVGGLVISQFITLYITPVIYLYLEQFQENVLDRTAFFRSRKAKVEEPEAEPSH
                     VQGDMAGGD"
BASE COUNT          287 a          303 c          279 g          247 t
ORIGIN      
        1 ctgaatttgg agaatcgcta tctcgagtca agagccacac gctaccgcgc agtggtactg
       61 acttcgtggc cactggattg agctaatcac cacccgccat gtcaccttga acgtgagatg
      121 gctcagcttc gggttcctcg actttcgctt tgcgcgaacg gaagaaggcc gtgcgatcga
      181 gcacgttctc ctgaaactgc tcgaggtata gataaatcac tggagtgatg tagagcgtga
      241 tgaattgtga aattacgagg ccgccgacaa caaccaatcc aagtggacgg cgtgaagcgc
      301 catcggcgcc aaagccaaga gcgattggta aagcgccaaa cacggccgcc agcgtcgtca
      361 tgagtatcgg tcgaaaacga tccatgctcg catcgtgaat cgcctgctcc gcactctcgc
      421 ccgcatcgac tcgttgacgc gcgaagtcga caatcatgat gccattcttc ttgacgatac
      481 ccatcagcat gaacatgccg acaaacgcat acagcgaagc ttcctgacca aagataatca
      541 aagtcagcaa gccaccaacc agggcagtcg gcagtgtcga cagaaccgtt aacggatgca
      601 cgtaactctc gtaaaggatc gccaggatca cgtacatcac aaacacagcg agcgccatca
      661 gaaaggtcag acttgtgacc gtacgtgaaa acgtttgcgc ttcaccgact aactccgcgc
      721 gaacgccagg tggaacaatc tccgctgctg acttggtgat gaagtttgtc gcatcgccca
      781 acgcaacgcc tggcttcaaa ttgaagaaca gcgtcacact cgtaaactgg ttcaggtgat
      841 tcacagtttg tggtccaagc gtggtgttcc acgtcacgag ttctccaagc ggtaccagtc
      901 gctttccgtc gtcggatcta atgtagagac gagcaagatc ttcaggattc gagcgagctt
      961 catcttcgat ctccaggatc acttgatact gatcttccgg tttcttgatg aggtacagat
     1021 agttttgtga gtacgcattt ctcaatagcg ataggattcg tgcttcagaa acgccgtaag
     1081 tcttcacctg atcccggcgc agatcgatgt ttacat
//
LOCUS       DATCGC010000184         1899 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_335549, whole genome shotgun sequence.
ACCESSION   DATCGC010000184 DATCGC010000000
VERSION     DATCGC010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1899)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1899)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1899
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_335549"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            101..475
                     /locus_tag="VIJ87_01805"
     CDS             101..475
                     /locus_tag="VIJ87_01805"
                     /inference="COORDINATES: protein motif:HMM:NF020397.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1801 domain-containing protein"
                     /protein_id="HEY5443213.1"
                     /translation="MKAIAPRTIDEYLASVSDEQRAALEKLRKTIRSAAPKAEECISY
                     QLPTFKQNGMLVCFGAWRDHCSFYPGAKPIEAHKDELKNFELSKGTIRFKTNKPIPAT
                     LIRKIVKERIADNELRAKKKKR"
     gene            472..1203
                     /locus_tag="VIJ87_01810"
     CDS             472..1203
                     /locus_tag="VIJ87_01810"
                     /inference="COORDINATES: protein motif:HMM:NF020296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA alkylation repair protein"
                     /protein_id="HEY5443214.1"
                     /translation="MTKPVQKQESISIDAQVDAVVQALKRLSSKSTRDGMLRFGIPND
                     NALGVPVGKMQKLAKELGPNHELAEALWQKGIYETRMMAALLDEPERVTPAQMDRWCK
                     DFDNWGIVDTVCFKLFDQTPHAWKKVDQWAGRKPEFQKRASFALLACLGVHDKQATNE
                     QFIRCLPLIEEAATDERNFVKKGVSWALRVIGRRNVELNKACTALARQLAGSTNPTAR
                     SLGKEALREFEGVVVKRKMKKEQTS"
     gene            1215..1766
                     /locus_tag="VIJ87_01815"
     CDS             1215..1766
                     /locus_tag="VIJ87_01815"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HEY5443215.1"
                     /translation="MRFLLFVSSLVVGLISFGAQAQPQETKVRDLIVTRTFDVPVERV
                     WKAWSDGESVMRWWGPNGFSSPVARMDFREGGSSLVCMRSPDGHDMYNTWTYKSIVPL
                     ERLEFVLDWADKDGNRIDPASIGLPPSMPRNVRHVITFKKLATNKTEMTVTEFGYTSE
                     QHFELSKAGLIECLDKMAAIFAR"
BASE COUNT          537 a          454 c          491 g          417 t
ORIGIN      
        1 gggcgattct cgaaatttaa caaagccaca cgctaccgcg tcgtggtact gacttcatcg
       61 ccactgcgaa ctaatagtca acaaccagtg gaatcatgtc atgaaagcca tagcaccacg
      121 aacaatcgac gaatatcttg catcggtaag cgacgagcag cgcgcggccc tggagaaact
      181 tcgtaagact atccgatctg cggcacccaa agcagaagaa tgcatcagct atcaactacc
      241 aacttttaag caaaacggaa tgttggtgtg ctttggggcg tggcgggatc attgctcgtt
      301 ttaccctggc gcaaagccga tcgaagcgca caaagatgaa ctgaagaact ttgaactcag
      361 caaaggaacg attcgcttca agaccaacaa gcccatcccc gcaacgctga tccgcaagat
      421 cgttaaggag cggattgccg acaatgagtt aagagcgaaa aagaagaaga gatgacgaag
      481 cctgtgcaaa aacaagagag catttcaatc gatgctcagg ttgatgccgt ggttcaggca
      541 ctcaagcgtc tgagcagcaa aagtactcgc gacggcatgc ttcgctttgg cattccaaat
      601 gacaacgcgc tcggtgttcc agttggaaaa atgcaaaaac tggcaaaaga gcttggtcct
      661 aatcacgaac tcgctgaagc gctctggcaa aaaggtattt acgagacgcg gatgatggcg
      721 gcgctgcttg atgaacctga acgagtaaca ccagctcaaa tggatcgttg gtgcaaagac
      781 tttgacaact ggggcatcgt cgacaccgtt tgcttcaagt tgtttgatca aacaccacat
      841 gcctggaaga aagtggatca atgggccggg cgcaaaccag aatttcaaaa gcgcgcttcc
      901 tttgcattgt tggcgtgtct cggtgtccac gacaaacaag cgactaacga acaattcatt
      961 cgctgtttgc cactgattga agaagccgca accgatgaac gcaactttgt aaagaagggt
     1021 gtcagttggg cgttgcgagt gattggacga cgcaatgtcg agctcaacaa ggcatgcacg
     1081 gcacttgcgc gacagcttgc cgggtcgaca aatccgacgg ctcggtcgct gggtaaagaa
     1141 gcactaaggg agtttgaggg cgtcgtcgtc aaacgcaaaa tgaagaagga acagacgagt
     1201 taaggaaggt agacatgcga ttcctgttat tcgtttcaag tttagttgtg ggtctcattt
     1261 cgtttggcgc gcaagcacaa ccgcaagaaa ccaaggttag agatctcatt gtcacacgca
     1321 ccttcgatgt accggttgag cgcgtttgga aagcctggag tgatggtgaa agtgtaatgc
     1381 gttggtgggg ccccaacggc tttagctcgc ctgttgccag aatggatttt cgtgaaggcg
     1441 gttcatcgct tgtttgtatg cgatctccag acggccacga catgtacaac acctggacct
     1501 acaaaagcat tgtgccgctg gaacgactcg agtttgttct ggactgggcc gacaaagatg
     1561 ggaatcggat cgatcccgcg agcattggac ttcccccaag catgccccgc aacgttcgcc
     1621 acgttattac tttcaaaaaa ctcgctacga acaaaacgga aatgacggta accgagtttg
     1681 gttacacgtc ggagcaacac ttcgaattgt cgaaagctgg gctaattgaa tgtctcgaca
     1741 agatggctgc gatctttgca aggtaatcac ttctattcac accacgaaac gagagcaatc
     1801 atgacgcaaa acattacgcc cttcctatgg tttgacgata acgccgatga agcagtcaat
     1861 ttctatcttt caattttcaa agacagccgg cttctggat
//
LOCUS       DATCGC010000185         1039 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_69042, whole genome shotgun sequence.
ACCESSION   DATCGC010000185 DATCGC010000000
VERSION     DATCGC010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1039)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1039)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1039
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69042"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..722
                     /gene="blaOXA"
                     /locus_tag="VIJ87_01820"
     CDS             <1..722
                     /gene="blaOXA"
                     /locus_tag="VIJ87_01820"
                     /EC_number="3.5.2.6"
                     /inference="COORDINATES: protein motif:HMM:NF012161.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008800 - beta-lactamase activity
                     [Evidence IEA];
                     GO_process: GO:0030655 - beta-lactam antibiotic catabolic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="class D beta-lactamase"
                     /protein_id="HEY5443216.1"
                     /translation="DAPELGKYFEEMNVVGTFVLFDVAGDKMIVWNKARAEQRITPAS
                     TFKIANSLIGLDVGAVKNVDEVLPYGGKPQWIKEWERDMGLREAIKMSNVAIYQELAR
                     RIGIERMRAGVKKLGYGNMEIGNVVDRFWLDGPLAISAIEQTEFLHRLVKGSLPITPE
                     AVRAVKEITLLEKTDAYELHGKTGWLVGSTSPQIGWWVGWVERNERIFPFALNIDMKS
                     DADAAKRIPLGRNCLKALGKL"
     gene            761..>1039
                     /locus_tag="VIJ87_01825"
     CDS             761..>1039
                     /locus_tag="VIJ87_01825"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY5443217.1"
                     /translation="MKLSVQGISKLYPGKVWGLKNFTLEVGSGILGLLGPNGAGKSTL
                     MRILATITKPNSGMVTWNEIDILRSPNRLRAVLGYLPQDFGVYPNLNAI"
BASE COUNT          265 a          232 c          302 g          240 t
ORIGIN      
        1 aagacgcccc ggagttggga aaatacttcg aagagatgaa tgtcgtcgga acattcgttc
       61 tctttgacgt cgcaggcgat aaaatgattg tttggaacaa ggcgcgtgcc gagcaacgca
      121 ttacaccggc ttcgacgttt aagattgcaa attcgctcat tggtttggac gtgggcgcgg
      181 tcaagaacgt tgatgaagtg ctgccttacg gtggtaaacc gcaatggatt aaagaatggg
      241 aacgtgacat gggtctgcgc gaggcaatca agatgtcaaa cgttgcaatt taccaggagc
      301 tcgcgagacg gattgggatc gaacgaatgc gtgcgggtgt aaagaaactt ggctacggaa
      361 acatggagat tggcaatgta gtcgatcgat tctggcttga tggtccgctt gctatttcag
      421 caattgagca aacagagttt cttcatcgac tggtgaaggg atcgctcccg atcacgcccg
      481 aagcggtgcg cgcggtaaag gagatcacac ttctggaaaa aaccgacgct tacgagttgc
      541 atggcaaaac tggatggctc gttggttcca catctccgca gattggctgg tgggtgggct
      601 gggtcgaacg caacgagagg atcttcccgt ttgcgctaaa catcgacatg aagagtgacg
      661 cagatgccgc aaaacgcatc ccgcttggac ggaattgtct gaaagctctg ggcaagctct
      721 agatcgtacc gaaaatttta cgccgtcgga agcgctggaa atgaaactat ctgtccaagg
      781 gatcagcaag ctttaccccg ggaaggtttg gggcctgaag aacttcaccc ttgaagtggg
      841 ttcagggatt cttggtttgc tcggaccgaa tggcgcgggc aaatcgacgc tgatgcgcat
      901 ccttgcgacg atcacgaaac cgaattctgg gatggtgacg tggaatgaaa tagacatcct
      961 tagatcaccc aaccgtttgc gagcggtgct tggttatctc ccgcaggatt ttggcgttta
     1021 tccaaacctc aacgcaatt
//
LOCUS       DATCGC010000186         1004 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_402078, whole genome shotgun sequence.
ACCESSION   DATCGC010000186 DATCGC010000000
VERSION     DATCGC010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1004)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1004
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_402078"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..917
                     /locus_tag="VIJ87_01830"
     CDS             <1..917
                     /locus_tag="VIJ87_01830"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY5443218.1"
                     /translation="LTEIATNEPWKKAADLLEVVRKSHSPVSEEVTCETTGKTWALTM
                     YLINEFGSVGQRAIFVAQDITKRTELEASLRQSEMMSLLGSLVAGVAHEVRNPLFGIS
                     SILDAFETRFADRTEYLRYTNVLRDEIGRLTVLMEELLEYGKPFRGELYLVSIDEMVS
                     RSIRACLPAAEVGHVTLVSDVEENLPKVRIDRRRLSKVFVNLIENAIQHSPNGSTVTI
                     QARQLSEGKQDWVECAIRDNGKGILEQDLPKIFEPFFSKRRGGTGLGLAIAQRIMEEH
                     EGKLIAGNNPDGGACMMARFPVALEGDQ"
BASE COUNT          257 a          234 c          273 g          240 t
ORIGIN      
        1 gtctcactga gatcgccacc aacgaacctt ggaagaaagc cgcggatcta cttgaagttg
       61 tgcgcaaaag tcattcgccg gtttcggaag aagttacgtg cgagacaacg ggtaagacat
      121 gggcgctgac gatgtacctt atcaacgaat tcggctcagt gggccagcga gcaatctttg
      181 ttgctcaaga catcactaag cgaaccgaat tggaggcttc actgcggcaa agcgagatga
      241 tgtcgttgct cggctcactg gtcgccggcg tcgcgcacga agttagaaac ccgctctttg
      301 ggatttcatc aattcttgat gcgtttgaaa ccaggtttgc tgaccggacc gagtatttgc
      361 ggtatacaaa tgtcttgcgt gacgaaattg gccggctgac ggttttgatg gaagagcttc
      421 ttgaatacgg caaaccattt cgaggtgaac tctatttagt ttcgatcgat gagatggttt
      481 ctcgatctat tcgcgcttgc cttcccgctg ccgaagttgg ccatgtcacc ctggtaagtg
      541 acgttgaaga aaacttgcca aaggtccgca ttgatcggcg ccgactctca aaagtcttcg
      601 tgaatctcat cgagaacgcc atccaacatt cgccaaacgg aagtaccgtc actattcagg
      661 cccgacagct ctcagagggt aaacaggatt gggttgagtg cgccatacga gataatggaa
      721 aaggtattct ggagcaagat cttcccaaga tcttcgagcc tttcttctcc aaacgtcgag
      781 gcggtaccgg cctcgggctt gccatagctc aaagaatcat ggaagaacac gaaggaaaac
      841 tcattgccgg caataatccg gatggcggag cttgtatgat ggcgagattc ccagtggccc
      901 tcgagggaga tcaatagatg ggcagaaaca aggttttggt ggttgacgat gaaccaggtg
      961 tacgttttgg aattcgcgac ttcctagagc aacagggtta tgaa
//
LOCUS       DATCGC010000187         1254 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_435366, whole genome shotgun sequence.
ACCESSION   DATCGC010000187 DATCGC010000000
VERSION     DATCGC010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1254)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1254)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1254
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_435366"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..706
                     /locus_tag="VIJ87_01835"
     CDS             <1..706
                     /locus_tag="VIJ87_01835"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY5443219.1"
                     /translation="FQNEDPIGKRVRWASDPGMRWMTIVGVVGDVKHFGLDLPELPAF
                     YTPYTQIAAWKRWMSVAARTQGDPASMSQAIKQEIWKVDSQLPVTRLQTMSDVAAESF
                     AARRFNMSLLTLFASLALVLASIGIYGVMSYAVTQRTPEIGIRMALGASTMDVLKLVI
                     RNGMTLVLIGVALGLVGAFALTRLMVTLLFGVTPTDAVTMTAVSAVLIGVALLACFIP
                     ARRATKVDPLVALRYE"
     gene            811..>1254
                     /locus_tag="VIJ87_01840"
     CDS             811..>1254
                     /locus_tag="VIJ87_01840"
                     /inference="COORDINATES: protein motif:HMM:NF016176.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HEY5443220.1"
                     /translation="MHAQPQSDSKSVWRLDPDHSSVEFSIKKLLFFTVTGRFTDLDGS
                     IVLDEKSVHRSSVEASVAARSVNTRNQQRDRQLRLAAFLDATTFPQIRFQSTEVMPGK
                     DRDMLRIKGALTIKDTSKEVVLDVTEVDRSRAPNGEEVIYYVAETA"
BASE COUNT          285 a          299 c          369 g          301 t
ORIGIN      
        1 tttccaaaat gaagatccga ttggcaagcg cgttcgttgg gccagcgatc ccgggatgcg
       61 ttggatgacg attgtgggtg ttgtgggtga cgtcaagcac tttggcctgg acctaccgga
      121 gttgccggcg ttctacacac cctatacaca aattgccgcc tggaaacgtt ggatgtctgt
      181 tgcggcccgg acgcagggtg atccggcgag catgtcgcaa gcaatcaaac aggagatctg
      241 gaaagtcgat tcgcaactac ccgtgacacg tcttcagacc atgagtgatg tcgcggcgga
      301 gtcctttgcc gcccgtcgtt tcaatatgtc gttactgacg ttgtttgcga gtctggcttt
      361 ggtactcgca tcaatcggca tttacggggt gatgtcatac gcagtaactc agcgcactcc
      421 ggagatcgga atacgaatgg cgctcggcgc aagcacgatg gacgtgctga agctggtaat
      481 ccgaaacgga atgacgcttg ttctcatcgg cgttgcactg ggtttggttg gagcttttgc
      541 gttgacccgg ttgatggtga ctttgttatt cggtgtaaca ccaactgatg cggtgacgat
      601 gactgcggta tcggcagttt tgattggagt tgcattactc gcttgtttta tccccgcgcg
      661 acgagcgaca aaggtcgatc cgttagtggc gctgagatac gagtgagtgg cacagacttc
      721 agtctgtgtc agcaaaggct agaactcctc ttgagcttga aagtactcgt taagttaaga
      781 acacagactg aagtctgtgc caccaagttt atgcatgcgc aaccacagag tgacagcaag
      841 agtgtttggc ggctcgatcc tgatcattcc agtgtggagt tcagcatcaa gaagctgctc
      901 tttttcaccg tgaccgggcg cttcaccgat ctcgatggtt ccattgtcct cgatgagaaa
      961 tcggtgcacc gctcgtctgt agaagcgagc gtcgccgcca ggagtgttaa cacgcgaaac
     1021 caacagcgtg accgtcagtt gagattggcg gcatttctgg atgccacaac ctttccgcag
     1081 attcgatttc agagcacgga agtgatgccg ggcaaggacc gcgacatgct gaggatcaag
     1141 ggggctttga cgatcaaaga cacgagcaag gaagtggtgc ttgatgtcac tgaagtagat
     1201 cgcagtcgag cgcccaatgg agaggaagtc atttactacg tagccgagac agca
//
LOCUS       DATCGC010000188         2867 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_268979, whole genome shotgun sequence.
ACCESSION   DATCGC010000188 DATCGC010000000
VERSION     DATCGC010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2867
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_268979"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..434
                     /locus_tag="VIJ87_01845"
     CDS             <1..434
                     /locus_tag="VIJ87_01845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443221.1"
                     /translation="QLTGITFEEFKKNIGLFKTPSGVFFVNPNLLNLTIPTTGPSAGK
                     TTASVLKPGLMAAPAPGTFGDFPVNSLSGPSYFNLDLSFTKRIPITERVKFEIKGTAI
                     NILNHPNFIYGNTNFDSTSFGRITSQRGGSRSMNIIGQLRF"
     gene            568..1569
                     /locus_tag="VIJ87_01850"
     CDS             568..1569
                     /locus_tag="VIJ87_01850"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5443222.1"
                     /translation="MLVPRLLSVLFALCFVIPVRAQMIPPGPSDTGLGGVNTISGTVL
                     LGGARIERHVSVRLQTMTRGDRVVVTDDYGNFAFRGLGSGDYTIVIDKEKEFKPFTQV
                     VSVIQPRGMPPQTYTLSIRLELKPRTETTGVLNAELANVPKPALVHYFAAIEKSKLDD
                     HTAAIEELKLAIKEYPSFMQAFNELGVQYLRLNQLEDADGAFQAALKITPDALVPLVN
                     RGIANVMMKRYGEAVPILRKALVKNDQSAVGHYFLGQALANLGLFNDAEKDLQAALKL
                     GGEEMKEAHRLLAIIYVSRGAKKQAADELDAYLKLAPDTPDADKLRDKIKELRESNE"
     gene            1689..2762
                     /locus_tag="VIJ87_01855"
     CDS             1689..2762
                     /locus_tag="VIJ87_01855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443223.1"
                     /translation="MSDSTVRQLSLAPLGAGDLIDRAVRLYRRHLFILIRTAAPPVIV
                     AALGGILVSIGFRQAVSVSETSEVLFYIGLLLVGVVIAFGGHLFTLVVMGGSTRNLVA
                     HLLHNDPVSAKATYQAVRARFGGLVVASLIVLMWIGFSSGTAVVIWYTIVAFVAFGAL
                     LLSNVAPIWLCVIIGVIGGAAATVVLLWLFFLIAGRVAYVPQVMLVEGRGVFEAFSRS
                     FTIAGGNVRRLMAMTLFTTFATYSAMMILLVPLGWYGYLNGINPMISAQWPAWYQISY
                     SVLVTLSSILLAPVWMLGLSLLYVDERVRHEGYDIELLAAQQLGEMPEQSVASPFGPA
                     LSKPVRNRLPPPPMSSGRVLNLR"
BASE COUNT          673 a          709 c          719 g          766 t
ORIGIN      
        1 ctcagctcac cggtattacc ttcgaggagt ttaagaagaa cattggcctg ttcaagacac
       61 cgagtggagt gttctttgtt aacccgaatc tcctcaatct aaccattccg acaaccggtc
      121 cgtcagctgg caagactacc gcttcggtac tcaagccagg cctgatggcg gctccggcgc
      181 ccggcacgtt cggcgatttt ccagtaaaca gtctgagcgg tccgagttac ttcaaccttg
      241 acttgagctt cactaagaga atcccaatca cggaacgagt caagtttgag atcaagggca
      301 ccgcgatcaa tatcctaaac catcccaatt tcatctacgg gaatacgaac tttgactcga
      361 catcctttgg tcgtattacc agtcagcgag gtggatcacg ctcgatgaac attatcggac
      421 aactaagatt ctagtccgac gaagttgata actgatggat ctgcctccga ggttcgatcc
      481 aatttctggg gcgttgtcgg agatatcgac aacgcccttt tgttttcaac actgagacct
      541 gctgtcccgg cgtttgaggt aaacacgatg ttagtgccac gactactgtc cgtacttttt
      601 gccttgtgct ttgtcattcc agttcgcgct caaatgattc cgccaggacc aagcgatacc
      661 ggtctgggag gagtgaacac aattagcggg acagtccttt taggtggggc gcgaattgag
      721 cggcatgttt ctgtgcgtct acaaacaatg acaaggggcg atcgtgtagt agtgaccgat
      781 gactacggaa acttcgcctt tcggggtctt ggttccggtg actacacaat tgttatcgat
      841 aaagaaaagg aatttaaacc attcacccag gttgtcagtg tcattcaacc tcgaggaatg
      901 cctccgcaaa cctacacttt gagcattcga ctggagttga agccacgaac tgagacgaca
      961 ggtgttctaa acgcggagtt ggcgaatgta ccaaagcctg ctttggttca ttactttgct
     1021 gccattgaaa aatccaaatt agatgaccat acagcagcca tcgaggaatt gaagctggca
     1081 ataaaggagt atccatcttt tatgcaggcg ttcaacgagc tcggggttca gtatctaaga
     1141 ctgaatcaat tggaggatgc cgacggggcg ttccaggctg cacttaaaat cactcccgat
     1201 gcactcgtcc ctcttgtcaa ccgtggcatt gcaaatgtca tgatgaaacg atatggcgag
     1261 gccgtaccaa tacttcgaaa agccttagtc aaaaatgatc agtcagcagt agggcattat
     1321 tttctgggcc aggccctggc gaatctcggt ttgttcaatg atgcagaaaa agatcttcaa
     1381 gccgcgctga aacttggagg ggaagaaatg aaggaagcac accgactact ggcgatcatt
     1441 tacgtctcca ggggagccaa aaaacaagcg gcggacgagt tagatgccta cctgaaattg
     1501 gcaccggata ccccggacgc cgacaaatta agggataaga tcaaagagct aagagaatcg
     1561 aatgaatgac acgaccaagc gcttcctata agacatgcgc gtccaaactc ctcacgaatc
     1621 atcctcacga atcatccctg tgataacatc acttatcttc aagatcatcc ccttgaagaa
     1681 ctcaatcaat gtctgattca actgtaagac agttgtcact ggctcctctc ggcgcaggcg
     1741 atctcatcga tcgcgctgtt cgtctctatc gtcgacacct atttatcctg atacgcaccg
     1801 cggcaccgcc agttatcgtt gctgcgcttg gcggaattct ggtcagcatc ggttttcgtc
     1861 aggctgtctc ggtctcagaa acatcggaag ttttgtttta catcggtcta ttactcgtcg
     1921 gagttgtaat tgcctttggt ggccacttgt tcacactcgt agtgatgggt ggttctacac
     1981 gtaacctcgt tgcgcattta ctacataacg acccagtctc tgcaaaggcc acctaccagg
     2041 ctgtgcgagc acgtttcggc gggttggttg ttgcctcgtt gattgtcctg atgtggattg
     2101 gattttcctc aggaactgcg gttgtcattt ggtacacgat cgtggcattc gtcgcgtttg
     2161 gcgcactctt gctgagcaac gtcgctccta tctggttatg cgtcatcatt ggggttattg
     2221 gtggtgcggc agcaacggta gtcctactgt ggttgttctt tcttattgcc ggccgggtgg
     2281 cttacgttcc gcaagtgatg ctggtggaag gcaggggagt ttttgaagcg tttagtagga
     2341 gctttacgat agcgggcggc aacgtgcgac gcttgatggc aatgacgcta ttcacgacct
     2401 ttgcaactta ctcggcgatg atgattctcc tcgtgcccct gggttggtat ggatatctca
     2461 acggtatcaa tccaatgatc tctgctcaat ggccagcctg gtatcagatt tcatatagcg
     2521 tgctggtgac tttaagctcc atccttttgg ctcctgtttg gatgctcggt ctttctctac
     2581 tctatgttga cgagcgagtc agacatgaag gttacgatat tgagttgctc gctgctcaac
     2641 agcttggtga gatgccggaa cagtcggtgg cttcaccttt tggtccggca ctctcaaaac
     2701 cagtccgaaa caggttgcca ccacctccaa tgtcgtcagg cagggtgttg aatctccgtt
     2761 gattggtaaa tgacgatacg tcaattgttc acctctagta accgtgtgcg agtagtgtcg
     2821 ggtctcgcac tccttgcggt tctcttgttt gcattccagt ccacggc
//
LOCUS       DATCGC010000189         1285 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_69079, whole genome shotgun sequence.
ACCESSION   DATCGC010000189 DATCGC010000000
VERSION     DATCGC010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1285)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1285)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1285
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69079"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..704)
                     /locus_tag="VIJ87_01860"
     CDS             complement(<1..704)
                     /locus_tag="VIJ87_01860"
                     /inference="COORDINATES: protein motif:HMM:NF024923.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-binding protein"
                     /protein_id="HEY5443224.1"
                     /translation="MALTRKKKIIIAVSVVALLAIVVIVSVFASRKEEPEVVTIKLEN
                     RPELKQTVTASGEVRPIRYIKLTSEVPGRIEEIYVSAGDQVIKGKPLVRIDPTQLQSN
                     QEAQWAATQASINDVQNARNAVNSAQQALIVAEASVAAARQQVVALQTSVDRAQVDVN
                     TAQRELKRYTELIEAGVSSRSEYDAARDRFDTAKIALETARANLESQKIAVKEATERA
                     NQQRIQVKEAQTSIKSS"
BASE COUNT          292 a          313 c          325 g          355 t
ORIGIN      
        1 gaggacttga tactggtttg tgcttccttg acttggatgc gttgctgatt ggcgcgttcg
       61 gttgcttcct taacggcaat cttctgagac tctaggtttg ccctggcagt ctcgagtgca
      121 atttttgcgg tgtcgaatcg gtcgcgagca gcgtcgtatt cagaccgcga cgaaacgcct
      181 gcttcaatca gttcggtata gcgcttcaat tcgcgctgag cagtgtttac gtctacctgc
      241 gcacggtcga cactggtttg caacgcgacg acttgttgac gcgcagctgc gactgacgct
      301 tcagcaacaa ttagggcctg ctgagcgcta ttgacggcat tccgagcatt ctggacgtcg
      361 ttgattgaag cttgagtagc agcccattga gcttcctggt tcgattggag ttgtgtcgga
      421 tcgatgcgaa ctagtggttt acctttaatt acctgatcgc cggcactgac atatatctct
      481 tcgatgcgtc cgggaacttc gcttgttagt ttgatatagc ggatgggtcg cacttcaccg
      541 gatgcggtca ctgtttgttt cagttcgggt ctgttctcca gtttgatagt tacaacctca
      601 ggctcttctt tacggctggc gaacacactg acgattacaa cgatggccaa cagagctacc
      661 acagataccg cgataatgat tttcttcttc cgagtcaatg ccatgttttc ttccttcgat
      721 ccaggggctt aaattcttgt tttgaaacga ggtaatagtt tttgttggga aaccggtacg
      781 ctcgaagtag cttctacgtc aaaagttatc aaactgtttc aattaacagc aaacagtgtc
      841 gaggctgagg cgtgcctact tcgagcctca ctcctcttga gatttcgtag ggaattccca
      901 agcagaagac cacccaggga ttcgaagcta aaagtcgtcc caaggtttct tacagattgc
      961 cagccgcgac tgagatggtc aaatgctccg tctaatagac gatctgatgt ggccaaatat
     1021 caacagaacc tgcatcaaat aggcatggcg ttggcgcact aattcgtttc gcgctaaaat
     1081 gacttgcttt cgaacgctcg acttccattt atcaaccccc aatcgagaag aaagggcgcc
     1141 cgagactaat tgccgatgat tacctgtgac cggtgtaaaa ctgagaactt agatggctcg
     1201 caatattgtg acgagtgtgg tgcccccctc aggcctagcg gtcaccatgg gatcggccaa
     1261 aagcttcata ataatggcgg tggac
//
LOCUS       DATCGC010000190         2091 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_236308, whole genome shotgun sequence.
ACCESSION   DATCGC010000190 DATCGC010000000
VERSION     DATCGC010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2091)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2091)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2091
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236308"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            129..1454
                     /locus_tag="VIJ87_01865"
     CDS             129..1454
                     /locus_tag="VIJ87_01865"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY5443225.1"
                     /translation="MASDTPRPGAFILRALAHKNYRLFFAGQSISLIGTWMTRIATAW
                     LVYRLTGSALLLGVVGFAGQIPSFLLGPLAGVLVDRWNRQRLLVITQVLAMFQSLALA
                     LLTMTGLIKMWHVIVLSVLQGLINSFDMPARQAFVVEMVEKREDLANAIALNSSMVNA
                     ARLLGPSIGGVVIAAAGEGWCFMIDAVSYIAVIASLLAMTITARVIQPTKDANVFQQL
                     REGWSYATHFAPIRNVLLLLALVSLVGMPYTVLMPVFANDVLHGGPNTLGLLMAASGV
                     GALVGALFLAARKTVLGLGKFIPLMAGAFGAGLIAFSFTRVLWLSLALMVVTGLGFMV
                     QMAVSNTVLQTIVDEDKRGRVMSFYTMAFMGTAPFGSLLAGSVADRIGTPHTLLCGGI
                     GCILGALWFATTLSDLRRDVRPIYERIGILPEVATGIQHSTELSVPPES"
     gene            complement(1629..>2091)
                     /locus_tag="VIJ87_01870"
     CDS             complement(1629..>2091)
                     /locus_tag="VIJ87_01870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443226.1"
                     /translation="HRYDELKNYRSADQDYSSKLGDRDLYQRYYRLAFESGYDTENPS
                     SNSRNRDRDNNDRGRDDRGNDHRGRDWGRYGTYGGSSELRQTALNAGYNAGIKEGRND
                     GKKHHQRSYGDFGSYQKATDDYSSKLGDKELYRRYYREGFENGYEDGLRGN"
BASE COUNT          406 a          568 c          560 g          557 t
ORIGIN      
        1 ctcaaccttc gtaggggtgg gcactccgtg gccacccctc ttctattcgt ttccttaccc
       61 gcctcggaac actttcctta cactaacgcc ccacaaaaca aaaacacccg ctgcaagcta
      121 gctctgcaat ggcatcggac acaccgagac cgggcgcttt cattctgcga gcgcttgctc
      181 acaaaaacta ccgcctcttc ttcgctggcc aaagcatttc gcttattggc acctggatga
      241 ctcggattgc cacggcctgg ctggtctatc gcctgaccgg ctcagctctg ctactcggtg
      301 tagttggttt cgccgggcag ataccatcat ttctgctcgg ccctcttgcg ggcgtgctcg
      361 tcgatcgctg gaaccgtcag cgtttgctcg taatcaccca ggtccttgcc atgtttcaat
      421 cactggcgct ggcgcttttg accatgaccg gcctaatcaa gatgtggcat gtgatcgtcc
      481 taagcgttct tcaagggctg atcaattctt tcgacatgcc cgcccgacaa gcgttcgttg
      541 ttgagatggt cgagaaacgc gaagacctcg cgaacgcgat cgcgctcaac tcctccatgg
      601 tcaatgctgc gcggttgctg ggtccatcga tcggcggagt tgtaattgcg gcagccggtg
      661 aaggctggtg cttcatgatc gacgcggtga gctacatcgc cgtgatcgct tcgctgctag
      721 ccatgaccat cacggcgagg gttattcagc caacaaagga cgcgaacgtc tttcagcaac
      781 ttcgggaagg gtggagttat gcgactcatt tcgcaccaat tcgcaatgta ctgttactgc
      841 ttgccttggt gagtctggtt ggcatgcctt acacggttct gatgcctgtc tttgcgaacg
      901 atgtgttaca cggcggtcct aatacgttag gtctattgat ggctgcgtca ggtgttggcg
      961 cgctggtagg tgcgctgttc ttagcggcgc gcaagacagt gttgggactt ggtaagttta
     1021 tcccgctaat ggctggagct tttggcgccg gactcatcgc gttttcattc actagagtat
     1081 tgtggttgtc gctcgctttg atggtagtaa ccggacttgg tttcatggtg caaatggctg
     1141 tcagtaacac cgtgctgcaa acgattgtgg atgaagacaa gcgtgggcgc gtgatgagtt
     1201 tctacacgat ggcttttatg ggaaccgcgc cgttcggcag cttgctggcg ggaagcgtcg
     1261 ctgatcgcat cggtactcca cacacgctgc tctgcggcgg catcggctgt attctcggtg
     1321 cgctttggtt tgcgacaacg ctttcagatc tgcgtcgcga tgttcgacca atctacgaga
     1381 ggattggaat acttccagaa gttgcgaccg gcattcagca ctcgactgag ttgagcgtcc
     1441 caccggaatc gtgaggatta aggttgtggc gaacccgcgg gggtaaaccg cccttcactt
     1501 gttcttgttc ttgcgcaatg cttgattcgg agtgatatta gaccgatgat cagaacaagt
     1561 aaggaagggc ggtttatgcc cgccgcttag tattactttt gctcaaatga gaagtgcctg
     1621 gtgaatcttt agttcccgcg aagcccatcc tcgtaaccat tctcaaaacc ttcgcggtaa
     1681 tacctccgat acaactcttt gtctccgagc tttgagctgt agtcgtcagt ggccttctga
     1741 tacgacccga agtcaccgta gcttctttga tgatgtttct tcccatcgtt gcgaccttcc
     1801 ttaatgccag cgttataacc agcattcagt gcggtctgtc gaagttcaga tgaaccacca
     1861 taggttccat agcggcccca atcgcgtccc cgatgatcgt ttccccgatc gtcgcgtcca
     1921 cgatcgttgt tatcgcgatc gcggtttctt gaattcgagg acggattctc ggtgtcgtac
     1981 ccactctcaa acgcgaggcg gtaatagcgt tggtagagat cacgatcgcc cagcttggaa
     2041 ctgtaatcct gatcggcgct gcgataattc ttcaactcgt cgtaccgatg g
//
LOCUS       DATCGC010000191         1282 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_202459, whole genome shotgun sequence.
ACCESSION   DATCGC010000191 DATCGC010000000
VERSION     DATCGC010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1282)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1282)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1282
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_202459"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            291..>1282
                     /locus_tag="VIJ87_01875"
     rRNA            291..>1282
                     /locus_tag="VIJ87_01875"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          335 a          303 c          390 g          254 t
ORIGIN      
        1 cataacccga aggtcatagg ttcaaatcct atccccgcta ccagcctgaa ggataggttc
       61 aggagtcgaa cggcgcgtcc gttcggttcc cctaagccag gtggttgcag aagtcacgca
      121 accatacctt cttagaaacg ctctttaaca atatacagcc gataagtgtg ggcacttggc
      181 ttcagggtgc cgcgcaagtc ttcggactcg ctcggaatct cggtacattg aagtttgaag
      241 tgctcgcgca gcgtatatat acgtcaagcg agtgatactt tgcagtgatt aaactgaaga
      301 gtttgatcct ggctcagatt gaacgctggc ggcatgcctt acacatgcaa gtcgaacgcg
      361 aaaagggggc aacccctgag tagagtggcg aacgggtgag taatacatcg gaacgtgtcc
      421 agtagcgggg gataacctct cgaaagagag gctaataccg catacgacct acgggtgaaa
      481 gagggggatc gcaagacctc tcactattgg agcggccgat gtcggattag ctagttggtg
      541 gggtaaaagc ctaccaaggc gacgatccgt agctggtctg agaggacgac cagccacact
      601 ggaactgaga cacggtccag actcctacgg gaggcagtag tggggaattt tggacaatgg
      661 gcgcaagcct gatccagcca tgccgcgtga gtgaagaagg ccttcgggtt gtaaagctct
      721 ttcggcgggg acgaaaaggt gcgtgataac accgcgcatc catgacggta cccgcagaag
      781 aagcaccggc taactacgtg ccagcagccg cggtaatacg tagggtgcag gcgttaatcg
      841 gaattactgg gcgtaaagcg tgcgcaggcg gctccttaag tcagatgtga aatccccggg
      901 cttaacctgg gaactgcgtt tgaaactggg agacttgagt gtggcagagg ggggtggaat
      961 tccacgtgta gcagtgaaat gcgtagagat gtggaggaac accgatggcg aaggcagccc
     1021 cctgggctaa cactgacgct catgcacgaa agcgtgggga gcaaacagga ttagataccc
     1081 tggtagtcca cgccctaaac tatgtcaact ggttgtcggg gaagcaattc cttggtaacg
     1141 aagctaacgc gtgaagttga ccgcctgggg agtacggccg caaggttaaa actcaaagga
     1201 attgacgggg acccgcacaa gcggtggatg atgtggatta attcgatgca acgcgaacaa
     1261 ccttacctac ccttgacatg tc
//
LOCUS       DATCGC010000192         1933 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_368747, whole genome shotgun sequence.
ACCESSION   DATCGC010000192 DATCGC010000000
VERSION     DATCGC010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1933)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1933)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1933
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_368747"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1100
                     /locus_tag="VIJ87_01880"
     CDS             <1..1100
                     /locus_tag="VIJ87_01880"
                     /inference="COORDINATES: protein motif:HMM:NF014069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEY5443227.1"
                     /translation="SERYSIKPDDRIAARAAALLHDVGHGSFSHVMEKVLNFHHEQWT
                     VQVMLSEQTEIGQLLRSYSAELPEKVASIIEGKFQPSALAQLVSSQLDVDRMDYLLRD
                     SLMTGAKYGIYDLEWIINALAIDEAADRIYVEARGLYAVEEYLQARYYMFRQVYFHRT
                     LRSAEAVLRSIIRRALNLHENGFDVWHAPGTAFAKILRREPLTITEHLQVDDSDFVFH
                     VKQWQHSPDAILKNLSDRFIHRRLFKAIDLDMPASEKDEFLDAAREAVRRAGFDPDYY
                     FIEDRASDVPYYSYYAAERAEPKTHIYVESGYAHPGILEISEVSNVVKGLQHGYELHR
                     VCFPAEVKDEVYEIYHRRGLRSEGVKAGVEH"
     gene            1154..>1933
                     /locus_tag="VIJ87_01885"
     CDS             1154..>1933
                     /locus_tag="VIJ87_01885"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEY5443228.1"
                     /translation="MFRLFFIFLCLLLLTSYVQAQETQHSIKLGILDFGTTPLGKRAA
                     DKLRAGFRSVSNVQILDPDLSLTAARGVGYSGSLNMTVSDARDLGNAMDSEFFIIGDA
                     QTLRRSSSQVVEYYESYSSILVISSRSGQLVLWDRLSAESDKPNSAEENLSKALSAKE
                     LIERCLKAIDKALSDEKNQRAIVLDTKAPLVEEAPEDDNAAEAQGLRLPRPFRRLRPA
                     YPESAARAEIEATVDVLVDVGADGEVGQIQVARWAGFGLDET"
BASE COUNT          494 a          484 c          494 g          461 t
ORIGIN      
        1 tcagcgagcg ctactcgatc aaacctgacg atcgaatagc tgcgcgcgcc gccgcgttac
       61 ttcatgacgt aggacacggc tcgttctcgc acgtaatgga aaaggttctc aacttccatc
      121 acgaacaatg gaccgtacaa gtaatgctga gtgagcagac tgagattgga caactgttgc
      181 gctcatactc tgccgagttg ccggaaaaag tcgcttcgat aatcgaaggt aagtttcagc
      241 cttccgctct ggcgcaacta gtctcgtcac aactagacgt ggaccgaatg gattatctac
      301 ttcgggattc cctgatgacc ggcgcgaagt atggcatcta cgatctcgaa tggatcataa
      361 atgcattggc gatcgatgaa gcggctgatc gaatctatgt tgaagctcgt gggctttatg
      421 cggttgaaga atatcttcaa gctcgctact acatgtttcg gcaagtctac tttcaccgca
      481 cgctgcgatc ggccgaagca gtgttgcgct ccattattag acgagcgttg aacctgcatg
      541 aaaacggctt tgatgtttgg catgcacccg ggacagcgtt tgccaagatt ctgcgacgag
      601 aaccgctaac gatcactgaa catcttcaag tcgatgattc tgactttgtc tttcacgtaa
      661 agcagtggca acactcacca gatgcgatac tgaaaaacct tagtgatcgg tttatccacc
      721 gaagactctt caaagcgatt gatctggaca tgcccgcttc ggaaaaagat gagttcctgg
      781 acgccgcgcg agaggctgtt cgcagggccg gattcgatcc tgactactac ttcatcgaag
      841 atagggccag cgacgttccc tactacagct actacgccgc ggaacgcgct gaacctaaga
      901 ctcatattta tgttgagagt ggttacgctc atccggggat cctggagatc agcgaggtga
      961 gtaatgttgt aaaaggtcta caacacggct atgaactaca tcgcgtttgc ttcccggcag
     1021 aagtaaaaga tgaggtgtat gaaatctatc accgcagagg attgagaagt gaaggtgtga
     1081 aagctggcgt ggagcactga cgtcgtgtaa cacaggacaa caccgggttc cctcttcact
     1141 aaacaaggca agcatgttcc gtctgttttt cattttcttg tgcctgttgc tcctaacctc
     1201 atacgtacag gcacaagaga cacagcattc aattaagctg ggcatccttg atttcggtac
     1261 tacccctctc ggcaaacgcg cagcagataa actacgcgcc ggttttcgtt ctgtttcaaa
     1321 tgttcaaata ctagatccgg atctcagttt gacggccgca cgtggagtcg gatattcagg
     1381 ctccttaaac atgacagtct ctgacgctag agatctcggc aatgcgatgg attccgagtt
     1441 ctttattatt ggagacgcac aaacgctccg tcgttcctcc tcgcaggtcg ttgaatatta
     1501 cgaatcgtat tcctcaatat tggtaatcag ctcgcgatct ggtcaactcg tactctggga
     1561 tcgactcagt gcagagtccg acaaaccaaa cagcgctgaa gagaatctca gtaaagcctt
     1621 gtcggccaaa gaactgatcg agcgctgcct gaaggccatc gataaggcgc taagcgacga
     1681 gaagaatcaa cgggcaatcg ttctggatac aaaagctccc ctcgttgaag aggctcctga
     1741 agatgacaac gcagctgaag cacagggtct tcggttgcct cgaccctttc gccggctcag
     1801 accggcgtac ccggaaagcg ccgctcgcgc agagattgaa gctactgtag atgtactagt
     1861 cgacgttggt gcagatggag aagttggcca gatccaggtt gcgcgttggg caggctttgg
     1921 actagacgaa aca
//
LOCUS       DATCGC010000193         1093 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_402143, whole genome shotgun sequence.
ACCESSION   DATCGC010000193 DATCGC010000000
VERSION     DATCGC010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1093)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1093)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1093
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_402143"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(419..1027)
                     /locus_tag="VIJ87_01890"
     CDS             complement(419..1027)
                     /locus_tag="VIJ87_01890"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEY5443229.1"
                     /translation="MRNNTGSNSTVPRFLVCLIVLVVSVFVMFGSGATSQKQSGIPPP
                     KTQEKLPDKDFTRSPEKPHDPSAFFFSFDQLDYYYRVPGEFTHRLTGDQYGFESLSFI
                     ISETHPGGGPGLHIHDVEEAHVLLEGTAEYRIGDKTFTVQAPYVAKVPAGVAHTFINA
                     GSKNFNLIAVFPSKHPSTTRVGPNPLVPAGQKREEPQTGPIP"
BASE COUNT          272 a          248 c          305 g          268 t
ORIGIN      
        1 tgtttgatat ttgcgctgcg gcaggaatgg atccggcaag caggacactg caaaccagga
       61 tcagagttat gcaactgtgt agcgacgcca tcattgggcg ggcataataa tcggagcaaa
      121 tgatgggagc aatgagctcg cggaaagtat tggtaggcat ctcttcggca ggttaggatc
      181 gcgccctcca ccaatgaagt actgggcctt catcagctac agccatgccg actctgcttc
      241 atcgagcact ggaaacatat cgtttgccac gtgattcaca tagaagacgc gggtgtcatc
      301 taatcctaca aactgtataa gtccacacca cgaacaataa ttctgatcgg tttatccagt
      361 tttggcagca gagggtagtg cgagcaaagt gagaaaagcg tttagtttta gagttaagct
      421 acggaattgg accagtttgc ggctcctctc gtttctgacc agcggggact agggggtttg
      481 ggccaacccg cgttgtgctg ggatgcttcg acggaaacac cgcgatcaag ttgaaattct
      541 tgctgccggc attgatgaag gtgtgtgcga cgccagctgg caccttcgcc acgtaaggtg
      601 cttgaaccgt aaacgttttg tcgccgatgc gatattctgc cgtcccctcg agtaatacat
      661 gcgcttcctc aacatcatgt atatgaaggc ctggcccacc acccggatga gtctcggaga
      721 tgatgaaaga aagcgactcg aatccatatt ggtcaccagt tagccgatgt gtgaactcgc
      781 cgggaacgcg gtagtagtag tcgagctgat caaaactgaa aaagaaagcg gatggatcgt
      841 gaggcttttc cggtgagcgg gtgaagtctt tgtccggtaa cttctcttgt gttttgggtg
      901 gaggaatgcc gctctgcttc tgcgaagtag cgccacttcc aaacatgacg aagactgaaa
      961 ctacgaggac gattaggcag acgagaaatc tcgggactgt cgagttcgag ccggtattgt
     1021 ttctcattga tgaagagtag cttatatgtg cccttgacga taggtatctt ctaatcgagt
     1081 ggacgatctg atc
//
LOCUS       DATCGC010000194         1097 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_3416, whole genome shotgun sequence.
ACCESSION   DATCGC010000194 DATCGC010000000
VERSION     DATCGC010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1097
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3416"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..636)
                     /locus_tag="VIJ87_01895"
     CDS             complement(<1..636)
                     /locus_tag="VIJ87_01895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443230.1"
                     /translation="MRVPFRRELPILLMLLFAFTARSATAQCTQKLTDLPPAPELLGF
                     RLGMTKDQIKAHLPQAAFGHTDPFGISKTTINPYFDPTIDKAKFPDVRSISLDLLDDH
                     LTSLWIGFDSGFRVQVIEDFAKLVSTSLKLPEAWTAGRGRGLQMKCADFHLIVSTIAG
                     GPSLRVLDIGAEDVVAARRQAKEERDSAVEAGTSEESELVADKQAKVYYLPS"
     gene            complement(869..>1097)
                     /locus_tag="VIJ87_01900"
     CDS             complement(869..>1097)
                     /locus_tag="VIJ87_01900"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5443231.1"
                     /translation="PDLIIMDMEMPQLDGLSATRRIRQQAKHSHVPIVAVSAYGADQF
                     RALALEAGCDEYVSTPFEPKALEGIIRELMH"
BASE COUNT          288 a          255 c          279 g          275 t
ORIGIN      
        1 actcgggagg taatacacct tggcttgttt gtcagcgaca agttcggatt cttcggaagt
       61 tcctgcttca acagctgaat cacgttcttc ttttgcttgg cgtcgggctg cgacgacatc
      121 ttccgctcca atatcgagaa cacgcaaact aggtccaccg gcaatcgtgg aaactatcaa
      181 atgaaaatca gcgcatttca tctgtagtcc tctgcctcgt ccggcggtcc aggcttccgg
      241 aagttttagt gaggttgaga cgagctttgc aaagtcttcg attacttgaa ccctgaaacc
      301 actgtcgaaa ccaatccaaa gcgaggtcag gtgatcgtca agaagatcca acgatatgct
      361 gcgcacatct ggaaattttg ccttatcaat tgtgggatcg aaataaggat tgattgttgt
      421 ctttgaaatg ccgaaggggt cggtgtgccc aaacgcagct tgaggcaagt gtgccttaat
      481 ctggtccttt gtcattccga gacggaaacc gagtagttca ggagccggag gcaggtccgt
      541 tagtttctgt gtgcattgag cggttgcact acgagccgta aacgcaaaca acagcataag
      601 cagaattggc aattctcgac gaaagggaac gcgcatctga ttgagtttcc gtgtatcgcg
      661 ggccgtactg gcgggccctt agtaagagga gttcgagcga aacttaggtg aaagagaaaa
      721 gactgtcaag agatgtccga tatgctttag atgcccgata tgctttagct tgtcgaaatc
      781 ttcaagtagc gctacctcga tggcacgaca agctaaagca tatcggacat ctaaagcata
      841 tcgaacatct aaagcatatc ggacatgttc aatgcatcaa ctctctgatg attccttcaa
      901 gtgctttagg ttcaaacgga gtggaaacat attcatcgca accggcttct aaggccaatg
      961 cacgaaactg atcagcgcca taggccgaga ctgccacgat gggaacatgg gagtgttttg
     1021 cttgttgtcg aattcgacgt gtcgccgaca gcccatcgag ctgcggcatc tccatatcca
     1081 taatgatcaa gtcgggt
//
LOCUS       DATCGC010000195         1336 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_402201, whole genome shotgun sequence.
ACCESSION   DATCGC010000195 DATCGC010000000
VERSION     DATCGC010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1336)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1336)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1336
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_402201"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            142..984
                     /gene="pstA"
                     /locus_tag="VIJ87_01905"
     CDS             142..984
                     /gene="pstA"
                     /locus_tag="VIJ87_01905"
                     /inference="COORDINATES: protein motif:HMM:TIGR00974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HEY5443232.1"
                     /translation="MVHLGKADRRRRLTSAVMTSLTAGCTLLAVGLLLVILSYIAWQG
                     IGSLSFTFLVDSPRPVGEGGGIGNAILGSLVLLGLSSAVGLPLGISVGIYLSEIGKGR
                     FVGVVRFIVDTLTGIPSIVTGVFIYAILVLPMKHFSAFAGGIALALIMVPIVARTTEE
                     MLKLVPHSLREGALALGAPQWRVTLGVILPAAASGIATGAMLAIARVSGETAPLLFTA
                     FGSRFFSYYMDRPIASLTVQIYNYAISPYDEWHAQAWAATLVLMTLILGINIIVRFLT
                     RKRF"
     gene            987..>1336
                     /locus_tag="VIJ87_01910"
     CDS             987..>1336
                     /locus_tag="VIJ87_01910"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY5443233.1"
                     /translation="MSGVAMTKMPVQTAAPKIEVRQRMEPTATSENEAARAKVAVRDL
                     NFFYGRSHALHDISIEIPERIVMAFIGPSGCGKSTFLRTLNRMNDVIPATRVEGQVLI
                     DDSDIYATGTDVVD"
BASE COUNT          287 a          320 c          363 g          366 t
ORIGIN      
        1 agcgacacaa gatctctacc tcagcgcttt ggtggaactc ggattaattc ttttcctcgt
       61 tacgttcatt gttaacggca tcgcgcgaat tctggtttgg aacgtgactc gaaaaactgg
      121 cggcgtgagt agggcggctt aatggttcat ctcggaaaag cagatcgaag gcgtcgtctg
      181 acaagtgccg tcatgacgag tttgaccgcg ggctgtactt tgttggcagt tggactcttg
      241 ctcgtcattc tttcctacat cgcctggcaa ggaattggtt cattgagttt cacgttctta
      301 gtagatagtc ctcgccccgt tggtgaaggc ggagggattg gcaacgcgat tcttggttca
      361 ctcgtgttgc tcggactttc ctccgccgtt ggtttgccac tagggatttc agttgggatc
      421 tacctttccg aaatcggcaa ggggaggttt gtcggagtgg ttcgcttcat agttgacacg
      481 ctcaccggca ttccgtcgat tgttactgga gtattcatct acgcaatttt agttttgccg
      541 atgaagcact tctcagcctt tgcgggtggc atcgcgttgg ctttaatcat ggttccgatt
      601 gttgctcgaa caactgaaga gatgctcaag ctggtgcctc acagtttgcg tgaaggtgcg
      661 ctggctctcg gtgcgccgca gtggcgtgtg acgctaggcg taatcttacc tgcggcagct
      721 tcaggtattg ccactggcgc gatgctcgcc atcgcaagag tgtccggtga gaccgcacca
      781 ctattgttta cagcttttgg gagtaggttt tttagttact acatggatag gccaatcgca
      841 tcgctcaccg ttcagattta taactatgca atttcgccat acgacgagtg gcacgctcag
      901 gcgtgggcag caacacttgt cctgatgacc ctaattcttg gaatcaatat catcgtccga
      961 tttctaacac gtaagaggtt ttagctatgt ccggggtcgc gatgaccaaa atgccagtgc
     1021 aaacagcagc accaaaaatc gaagttcgac agcgaatgga gccgacggcc acttctgaaa
     1081 acgaagcggc aagggcaaag gtggcagtgc gcgacctcaa cttcttttat ggtcgttcac
     1141 acgcacttca cgatatttcg attgagatac cggagcggat agtcatggcc ttcatcgggc
     1201 catcgggttg cggtaaatcg actttcttgc gcacgctgaa tcgaatgaac gatgtgattc
     1261 cagcaacgcg cgtagaaggc caggtcttga ttgacgatag tgatatctac gccactggta
     1321 ctgacgtcgt tgactt
//
LOCUS       DATCGC010000196         1177 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_69176, whole genome shotgun sequence.
ACCESSION   DATCGC010000196 DATCGC010000000
VERSION     DATCGC010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1177)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1177)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1177
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69176"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..455)
                     /locus_tag="VIJ87_01915"
     CDS             complement(<1..455)
                     /locus_tag="VIJ87_01915"
                     /inference="COORDINATES: protein motif:HMM:NF023036.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-binding protein"
                     /protein_id="HEY5443234.1"
                     /translation="MKKLMGRLSGTDFGLWLFVTKTIAKTRAVQQQTEFCAKFVLIAL
                     LLVSVGATSCRKPNPADEKRFDLKGKVVAVERDKHLVTISHEAVKDFMPGMTMPFMLP
                     DEATLGYLATGDDITATLVVNGGQSWLENVTITRQSTDPSATTGITEAK"
     gene            complement(452..>1177)
                     /locus_tag="VIJ87_01920"
     CDS             complement(452..>1177)
                     /locus_tag="VIJ87_01920"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEY5443235.1"
                     /translation="LGLYDEALPEIFSARAANAKSATATNTQTTSFSDEGYSLAVYSL
                     RGGLANRAVRFGEQYWKTVPADYVIEVAPRDLVELLYPAPFRNSLLKHAPPRNVDPRF
                     ALAIIRQESRYQVDVKSVSAARGMMQFIPATANDIAAQLKLKDFIQDDLYFADTAVLF
                     GSQYLANLFQQFPNQPQAVAGSYNGGADNLARWIARSRANEADRYVPEIGFSQTKDYV
                     YKVMANYWNYQRLYDEQLQPLTK"
BASE COUNT          274 a          297 c          308 g          298 t
ORIGIN      
        1 tcctttgcct cagtgattcc ggttgtagcc gatgggtcag tgctctgtcg cgtgatggtg
       61 acgttttcca gccatgactg accgccgtta acaaccagcg tcgcagtaat atcgtcaccg
      121 gttgccagat atcccagggt cgcttcgtcg ggaagcatga atggcattgt catcccgggc
      181 atgaagtctt tgacagcctc atgcgaaatc gtaacgagat gcttgtcgcg ttcgaccgcg
      241 actactttgc ctttgagatc gaaacgcttc tcgtcagccg ggttaggttt gcggcaggaa
      301 gtggctccga cggaaacaag taacaaggcg atgagcacga acttggcaca gaattcagtt
      361 tgttgctgta cagctcgtgt cttcgcgatg gttttcgtaa caaacagcca cagaccgaag
      421 tctgtgccac tcagtcttcc catgagtttt ttcatttagt taaaggttgt aattgctcgt
      481 cgtagagtcg ttgatagttc caatagttgg ccatcacctt gtacacgtaa tcttttgttt
      541 gtgagaagcc tatttcgggg acgtagcgat cagcctcatt tgctcgagac cgtgcgatcc
      601 aacgggcaag attatccgca ccgccgttgt aggaaccagc gactgcctgc ggttgatttg
      661 gaaactgttg gaacaagttc gcgagatact gcgagccaaa aagcactgcg gtatctgcaa
      721 agtacagatc atcctgaatg aaatccttta gtttcagctg ggcagcaatg tcatttgcgg
      781 tagctggaat gaactgcatc atgccgcgag ccgcagaaac ggacttaacg tcaacctggt
      841 aacgcgattc ctgcctgatg atcgcgagcg cgaaacgtgg atcgacattt ctcggcggag
      901 cgtgcttcaa cagggagttt cgaaatggcg ccggatatag cagttcaact aaatcccgag
      961 gcgcaacctc aatcacgtaa tcagccggca ctgtcttcca atactgttcg ccaaagcgca
     1021 ccgcacgatt tgccagacca ccacgcagcg aatagacggc aagcgagtaa ccctcatctg
     1081 agaatgatgt tgtttgagtg ttcgttgcag ttgccgactt cgcgtttgct gctcgagcgc
     1141 taaatatttc cggcagtgct tcgtcgtaaa gtcccag
//
LOCUS       DATCGC010000197         1406 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_236422, whole genome shotgun sequence.
ACCESSION   DATCGC010000197 DATCGC010000000
VERSION     DATCGC010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1406)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1406)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1406
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236422"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            46..627
                     /gene="pyrR"
                     /locus_tag="VIJ87_01925"
     CDS             46..627
                     /gene="pyrR"
                     /locus_tag="VIJ87_01925"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: protein motif:HMM:NF003549.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HEY5443236.1"
                     /translation="MVVSAHMDFVEKARIMDGPRINRALARLSSEIVEENHGAGDLFL
                     VGIRRRGVPLAERMADKIADLEGSRPPVGVLDITLYRDDLSTVGAKPVVNRTELPGDI
                     ESRNIVLIDDVLYTGRTIRAALDQLIDFGRPRRVQLAVLIDRGKEHRELPIQADYIGK
                     LVPTKKSEIIKVMLQDFDEEEGVVIVERPSETA"
     gene            781..>1406
                     /locus_tag="VIJ87_01930"
     CDS             781..>1406
                     /locus_tag="VIJ87_01930"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HEY5443237.1"
                     /translation="MQSAFNRRHLLGIRELSAGEINYLLDTAETFRDVSKREIKKVPA
                     LRGRTVINLFFEPSTRTRTSFEIAAKRLSADAVNVSVSTSSVSKGETLLDTARNLEAM
                     SPDCIVIRHSMAGAPQHLARMCNAPIVNAGDGSHEHPTQALLDSLTIRQFKGKIEGLK
                     VAILGDILHSRVARSNVYLLTKLGANVSVSGPGTLVPKEFAELVDDGLR"
BASE COUNT          348 a          356 c          361 g          341 t
ORIGIN      
        1 ataaattaaa aatacagctt gtgccttttg tgcctttttg cggctatggt agtatccgcg
       61 cacatggatt ttgtcgagaa agcccgcatc atggatggcc cgcgcatcaa tcgcgcatta
      121 gccagactct catcagaaat agtcgaagaa aatcatggag cgggcgatct gtttctcgtt
      181 ggaatccgac gtcgcggagt accacttgca gaacgcatgg ctgataagat cgctgatctt
      241 gaaggttcgc gaccaccagt cggtgttctc gacataactc tctatcgcga tgatctctcg
      301 acggttggag cgaaaccagt cgtcaacaga actgagctgc cgggagatat cgagagtcga
      361 aacatcgtac tgattgacga tgttctatac accggccgaa ctattcgcgc agcactcgat
      421 cagttgatcg acttcggacg tcctcggcgt gtacagcttg cggttcttat cgaccgcggt
      481 aaagaacatc gcgaactccc aatccaggcc gactacattg gcaaacttgt gccaacgaag
      541 aaaagcgaga ttatcaaagt catgctccag gactttgacg aagaagaagg agtggtaatc
      601 gtcgagcgac cgtctgagac ggcgtaacgt gaagcggcca gtttggccgc tttttttatg
      661 ttcgatatgc tttagcttgt cgaggacgtc gaggggcaga gcaacgattt ccacttaaca
      721 agatgcgggc ttggctttgg cgagacaacg acaagctaaa gcttatcgaa cattcaaaag
      781 atgcaatcag ccttcaatcg tcgacaccta ctcggtattc gtgaactgag tgccggtgaa
      841 atcaattatc tgctcgatac cgcagaaacc tttcgcgatg tttcaaaacg cgagataaaa
      901 aaggttccgg ctctgcgcgg tcgcacggtc atcaatcttt tcttcgagcc ctcgacgcgc
      961 acacgcactt cctttgagat tgctgccaaa cgcctgtcgg ctgatgctgt gaacgtcagt
     1021 gtctcaactt cgagtgtaag caagggcgaa acactgctcg acactgcgcg caatcttgaa
     1081 gcgatgtccc cggattgcat tgtcattcga cattctatgg ccggtgcgcc ccagcacctc
     1141 gctcgaatgt gtaatgcacc gatagtgaat gccggcgatg gctcccatga acaccctacg
     1201 caggctttgc tcgattcgtt aactattcgc cagttcaaag gaaaaattga aggtctgaag
     1261 gttgcgatcc ttggagacat tcttcactcg cgagttgctc gctccaatgt ttacctgtta
     1321 acgaagctcg gcgcgaatgt cagtgttagt gggccgggaa cattagtccc gaaggaattc
     1381 gccgaactcg ttgatgacgg cttgcg
//
LOCUS       DATCGC010000198         1452 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_169358, whole genome shotgun sequence.
ACCESSION   DATCGC010000198 DATCGC010000000
VERSION     DATCGC010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1452)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1452)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1452
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_169358"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..280)
                     /locus_tag="VIJ87_01935"
     CDS             complement(<1..280)
                     /locus_tag="VIJ87_01935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HEY5443238.1"
                     /translation="MKQPGVLLVLITFVVGVSFVVGSEQYKNGTMQTTTLTGLNETSS
                     LGDPDGVGMLKFTVKADEGKFCYDLNVSTISDPTSATLNVGVRGISGAV"
     gene            complement(561..>1452)
                     /locus_tag="VIJ87_01940"
     CDS             complement(561..>1452)
                     /locus_tag="VIJ87_01940"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HEY5443239.1"
                     /translation="LAVSPIIIPTTNQTVEWTAGEVTNTFNPFEVISKDGFTMQLEVR
                     VVFRVKPEDAPFMVAKIGGIERLIQNVMHPLIDSIFRNQASESSAMAYLQNRHEEQER
                     AEARVRAHLLKYHVDVVNVLICHIHLPEELMKTQTEKILAEQRQNMYNAQREAEEKRI
                     QLEKTKAHADNQKDLMQATVGVEIAGKRAEQRKSEGEGEAHYILQTGRAEAEKVRLMG
                     EAQGVAYHEQVNALGAQGVSLIETLKVIGEKGVRITPDVMATGGNGDGGGGIGTLLLL
                     NLFREKLNLPGANGEKAITK"
BASE COUNT          313 a          388 c          361 g          390 t
ORIGIN      
        1 agaccgcgcc actaatgcct ctgacgccga catttagggt tgcgcttgtt gggtccgaaa
       61 tggttgagac attcaggtcg tagcagaact taccctcgtc agccttcacc gtaaacttca
      121 gcatgccgac gccatcggga tcgccaagac tgctggtctc gtttaaacca gtcagtgtgg
      181 ttgtttgcat ggttccgttt ttgtattgct cagaccccac aacgaaacta acgccgacga
      241 caaatgtgat cagaaccagt agaactcccg gttgtttcat aatggattaa gctccaagga
      301 ggagtgaagg gcttagcagc aagggaattt ttgagacggt ggattatcct cgatttcgtt
      361 ggatttgggt cttgtgaatt attgtttttt gtttcacggg tacccttgga gtgcggtggg
      421 cctggcaccg ctttggtaaa gtgcgactaa gcaacacatg agtttcgctt gaccaaagcg
      481 gtgccaggcc accgcactcc atggaaaaaa aaaagaggcg gacaaaactg cccgcctccg
      541 tcctttagga tccttgccgt ttatttagtg atcgccttct caccattagc acccggcaag
      601 tttaacttct cgcgaaacaa gttcagcagc agcagtgttc ctattccacc gccgccgtct
      661 ccattgccac ccgtagccat cacgtctggt gtgatgcgga cacctttttc accgatcact
      721 ttcagtgttt cgattagcga gacaccttga gcacctagtg cgttgacctg ttcgtggtaa
      781 gcaacaccct gggcctcacc catcaagcga accttctcgg cttcagcgcg accggtttgc
      841 agaatgtagt gggcctcgcc ctcaccttca gatttgcgct gttctgcacg tttgccggca
      901 atctcaacac cgaccgttgc ctgcatcaag tctttctggt tgtcggcgtg tgccttcgtc
      961 ttctcgagct gaatacgttt ctcttctgct tcacgctgag cgttgtacat gttttgtcgt
     1021 tgctcggcga gaatcttttc ggtttgtgtc ttcatcaact cttcaggaag atgaatgtgg
     1081 cagataagca cgttgaccac gtctacgtga tacttcaaca ggtgcgcgcg aacacgagct
     1141 tcggcacgtt cctgttcctc gtgtcgattc tgcaagtacg ccatcgcaga cgactcggaa
     1201 gcctggttgc ggaagatcga gtctatcaac ggatgcatga cgttttggat caaacgttcg
     1261 atgccaccga tcttagcgac catgaagggc gcatcttctg gcttaactcg gaagacgacg
     1321 cgaacttcca gttgcatcgt gaaaccgtct ttggaaatca cctcgaacgg attgaacgtg
     1381 ttagttactt cgcccgccgt ccattccaca gtctggttcg tcgttggaat aatgatcggc
     1441 gacacagcaa gt
//
LOCUS       DATCGC010000199         1087 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_202613, whole genome shotgun sequence.
ACCESSION   DATCGC010000199 DATCGC010000000
VERSION     DATCGC010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1087
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_202613"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..482)
                     /locus_tag="VIJ87_01945"
     CDS             complement(<1..482)
                     /locus_tag="VIJ87_01945"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY5443240.1"
                     /translation="MIDDDIKELQTNLAQTPNELAQLVQSFPLTNLTIKPAPDEFSVL
                     ENICHLRDIEIEGYTVRIRRILNEDRPFLYDLDGTRLAIERDYNRQSVSEALLSFSQA
                     RRHNLAVLGEVTESEFEREGELEGVGEITLRKLLETMWEHDGGHLDELRRSLRLAHAQ
                     S"
     gene            complement(579..>1087)
                     /locus_tag="VIJ87_01950"
     CDS             complement(579..>1087)
                     /locus_tag="VIJ87_01950"
                     /inference="COORDINATES: protein motif:HMM:NF025210.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HEY5443241.1"
                     /translation="HGVRAITAIPNVSMITIGGRGIVGVVGVAAKTFQAVASVRANVL
                     LISQSSSENDICLIVESSDAPATLKALRSAFAADLVHHDVEHISVNSDIAIVAVVGEK
                     MRGTPGIAGRTFSALGRGNINIIAIAQGSSEYNVSFVVEAGAMKEAMRAVHDEFALHV
                     ALTSAGVA"
BASE COUNT          285 a          301 c          237 g          264 t
ORIGIN      
        1 gactgggcgt gcgctaatcg taggctgcgt cgcaattcat ccagatgacc accatcatgt
       61 tcccacattg tctctagaag ttttcgcagt gtgatttcac caacaccttc cagttcacct
      121 tcgcgctcaa actcactttc agttacctca cccagaactg caaggttgtg acgacgcgcc
      181 tgagagaacg acaacaacgc ttcactcaca ctttgccgat tgtaatcgcg ttcaatagcg
      241 agcctggttc catcaagatc atatagaaag ggacgatcct cgttgagtat gcggcgaatt
      301 ctgacggtgt aaccttcgat ctcaatgtcg cgaaggtggc aaatgttctc gagcactgaa
      361 aactcatcag gcgccggttt aattgtgaga ttggttagag ggaaactctg caccagttga
      421 gcgagctcgt taggtgtctg agccaggttt gtctgtagct ccttgatatc gtcgtcgatc
      481 atacaagcgt tgccctcacc taatccaaat gaccaactga taaatgtcaa atgatatatg
      541 gaaaactatt tctttttccg cggtcgagtc tttcttactt aagccacacc ggctgaagtc
      601 agtgccacat gcagtgcaaa ctcatcatgc acggcgcgca tcgcttcctt catcgcgcca
      661 gcttcaacca caaacgatac gttgtactca gacgagcctt gtgcaatcgc aataatgttg
      721 atgttgcctc taccaagagc gctgaatgtg cgaccggcaa tccccggggt accacgcatt
      781 ttttcgccaa ccacggccac aatcgcgata tccgaattca ccgaaatatg ttcgacgtca
      841 tgatgcacaa ggtccgcagc aaaagctgaa cgcaaagcct tcagagtcgc cggtgcgtcg
      901 ctcgattcga caatcaaaca gatatcattt tctgacgacg attgagagat cagcaaaaca
      961 tttgcacgaa cactcgccac cgcttgaaag gtcttagccg caactccgac aacacccaca
     1021 atacctcgac caccaatggt aatcatgctg acgttcggaa tcgctgtgat cgcacgaaca
     1081 ccatgtt
//
LOCUS       DATCGC010000200         1046 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_335732, whole genome shotgun sequence.
ACCESSION   DATCGC010000200 DATCGC010000000
VERSION     DATCGC010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1046
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_335732"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            113..>1046
                     /locus_tag="VIJ87_01955"
     rRNA            113..>1046
                     /locus_tag="VIJ87_01955"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          262 a          236 c          319 g          229 t
ORIGIN      
        1 tgatgcatgt tcattcgtat ccattacgtt tgatagtgca ggtatcggct ccttgaagct
       61 catgcctctc aggtcagcga tcctcggatc gtgcctggtt ggtatgtgac acaaacttga
      121 gagtttgatc ctggctcaga acgaacgctg gcggcatgcc taacacatgc aagtcgaacg
      181 agaccttcgg gtctagtggc gcacgggtgc gtaacgcgtg ggaacctgcc tttaggttcg
      241 gaataactca gagaaatttg agctaatacc gaataatgtc ttcggaccaa agatttatcg
      301 cctttagatg ggcccgcgtt ggattagcta gttggtgggg taaaggccta ccaaggcgac
      361 gatccatagc tggtcttaga ggatgatcag ccacactggg actgagacac ggcccagact
      421 cctacgggag gcagcagtgg ggaatcttgg acaatgggcg aaagcctgat ccagccatgc
      481 cgcgtgagtg atgaaggccc tagggttgta aagctctttc accggagaag ataatgacgg
      541 tatccggaga agaagccccg gctaacttcg tgccagcagc cgcggtaata cgaagggggc
      601 tagcgttgtt cggaattact gggcgtaaag cgcacgtagg cggacattta agtcaggggt
      661 gaaatcccag agctcaactc tggaactgcc tctaatactg ggtatctcga gtccggaaga
      721 ggtgagtgga attccgagtg tagaggtgaa attcgtagat attcggagga acaccagtgg
      781 cgaaggcggc tcactggtcc ggtactgacg ctgaggtgcg aaagcgtggg gagcaaacag
      841 gattagatac cctggtagtc cacgccgtaa acgatggaag ctagccgttg gtaagtttac
      901 ttatcggtgg cgcagctaac gcattaagct tcccgcctgg ggagtacggt cgcaagatta
      961 aaactcaaag gaattgacgg gggcccgcac aagcggtgga gcatgtggtt taattcgaag
     1021 caacgcgcag aaccttacca gcgttt
//
LOCUS       DATCGC010000201         1139 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_302218, whole genome shotgun sequence.
ACCESSION   DATCGC010000201 DATCGC010000000
VERSION     DATCGC010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1139)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1139)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1139
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_302218"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            268..>1139
                     /locus_tag="VIJ87_01960"
     CDS             268..>1139
                     /locus_tag="VIJ87_01960"
                     /inference="COORDINATES: protein motif:HMM:NF028519.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY5443242.1"
                     /translation="MNTVRPSLRKGLLHLGVLLALLAMSSVALAQAGSSSVRGIINDL
                     QGRPVSGATVSLINEQKNFSRTQTTNDNGSYVFTAVPPGTYRVEVESTGFKKSSISEV
                     QALVDTPTNIDIQLEVGNVSETVSVTAGGDAPINTTDATIGNTFESRRITELPLNAGN
                     VVGLLSLQPGVTRTGFVNGGRSDQANITLDGVDVNEQQTGLDVVTNQAFSSVLRVMRE
                     SVQEFRVVTTNANADTGRSSGAQVSLVTKSGTNNWHGSLFEYHRNTVTTANDFFNNKA
                     GRFVATDPQVLSGTA"
BASE COUNT          281 a          304 c          285 g          269 t
ORIGIN      
        1 cgaaaacata aagggtcgcg tcgactcaaa tggatttctc tacattttag tggagtcgtg
       61 taactgatca cgcgtgaata cgaacacgca aaatttcaca ctcgactgac caccgctgga
      121 atagtttgtg caagtcctcc atcgaactgt agggttcgtc cagatccact caacacgagc
      181 ccgcggttca aaagctctac acccaaacaa ctatacaaaa acttggacgt ctccccgacg
      241 cacaaccacc ttccatcgga ggactcaatg aatactgtta gaccatcttt aagaaagggg
      301 cttttgcacc tgggcgtgct tctcgcgttg ctcgcgatgt cgagtgttgc cttagcgcaa
      361 gcaggttctt cgtctgtacg aggaatcatc aacgatcttc aaggtcggcc cgtttccggt
      421 gccacggttt ctcttatcaa cgaacagaag aatttcagtc gcactcagac gaccaatgac
      481 aacggcagtt atgtgttcac tgcagttccg ccgggcactt atcgagttga ggtcgaatcg
      541 actggtttta agaagtcttc gatttcagaa gtgcaggccc tcgttgatac tcctacaaac
      601 atcgacattc aacttgaggt cggaaacgtt tccgagaccg ttagtgtgac ggcgggtggc
      661 gacgccccaa ttaacactac cgatgcgacc attggtaata cgtttgaatc gcgacgtatt
      721 actgagctgc cgcttaatgc cggaaacgtc gtcggacttc tttcgcttca accgggtgtt
      781 acgcgcacgg gttttgtgaa tggcggaaga tcagaccagg cgaacatcac gcttgatggc
      841 gtcgacgtga atgaacaaca gactggcctt gacgtcgtta ccaatcaggc cttctcgagt
      901 gtgcttcgtg tgatgcgcga gtcagtgcag gagtttcgcg tggtaacaac caacgccaat
      961 gccgatactg gccgctcgtc aggcgcacag gtttcgctcg tgaccaagtc gggcacaaac
     1021 aactggcacg gttcgttgtt tgaataccat cgaaacacgg tgacaaccgc caacgatttc
     1081 ttcaacaaca aagccggccg gtttgtcgcg acagaccctc aggtgctgag tggcactgc
//
LOCUS       DATCGC010000202         2967 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_135871, whole genome shotgun sequence.
ACCESSION   DATCGC010000202 DATCGC010000000
VERSION     DATCGC010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2967)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2967)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2967
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_135871"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..210
                     /locus_tag="VIJ87_01965"
     CDS             <1..210
                     /locus_tag="VIJ87_01965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443243.1"
                     /translation="PNDPANRDRAEYEQWLADGGVPDPYTPPEPTPPHASQEATVLYD
                     HENRLRSLEGQPPLALADFINKKMT"
     gene            207..407
                     /locus_tag="VIJ87_01970"
     CDS             207..407
                     /locus_tag="VIJ87_01970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443244.1"
                     /translation="MILTLIMLTQLDGSPIWVESTAVQAIRPAVHSHCHNPHGAAIRL
                     SGIGLCVKETPERVREKLREGR"
     gene            410..835
                     /locus_tag="VIJ87_01975"
     CDS             410..835
                     /locus_tag="VIJ87_01975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443245.1"
                     /translation="MLLELHGNVSWFGGPMDEGVSPDEPLAFIYDVEDAPFLFLTHQP
                     PNTTGLARRLNPRVHYIACRWDYDVTPREMLLTQTALVRAPKTGVILRAFPADWGPHK
                     DTGRVADISSGLMKELMIETDDEVHVIFPYTYNRNEGVA"
     gene            835..1164
                     /locus_tag="VIJ87_01980"
     CDS             835..1164
                     /locus_tag="VIJ87_01980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443246.1"
                     /translation="MAQVPVSMQVIIYPRDKSIDPYPATIVGYAWITGLQVGGGPMPG
                     GRPGDAHPEHPIVLPPIEEPPPVEETGVGITITVKKAPESGGWGVNTDEGWYYAPGAG
                     QAGPKRR"
     gene            1171..1305
                     /locus_tag="VIJ87_01985"
     CDS             1171..1305
                     /locus_tag="VIJ87_01985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443247.1"
                     /translation="MPLKKSTSKAAFKSNIRAERKAGKPQKQAVAIAYSVKRKAARSK
                     "
     gene            1307..1525
                     /locus_tag="VIJ87_01990"
     CDS             1307..1525
                     /locus_tag="VIJ87_01990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443248.1"
                     /translation="MIGTIIGLIFVLIILGAIWWGAQQLLALISLGEPFNTIIRVLMG
                     IITVIIVIWVLIVLLGIAGINVNMPRIS"
     gene            1530..2090
                     /locus_tag="VIJ87_01995"
     CDS             1530..2090
                     /locus_tag="VIJ87_01995"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY5443249.1"
                     /translation="MKVELLNTPQQGVDIEKLAQLHHDEFGGSRQFNVLAVARAVWQC
                     VRDPERKYLNAWIGYDNADRPVGYIVGTIRPSLYSLSDIAQQEMWFVVPEHRSGLIAA
                     MLLWHFEKWAASKGVEHIYTQVEHDEKPEIVERIIAIMNRLGYKKQGYIAVKHIKQKG
                     NEDDRTTHSGVGVAQREEVERQRATR"
     gene            2017..>2967
                     /locus_tag="VIJ87_02000"
     CDS             2017..>2967
                     /locus_tag="VIJ87_02000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443250.1"
                     /translation="MIAPHIAAWALRKEKKLNDNELHADAGNATDIPNSARRKPKKVD
                     ERVLQTKGGGGYVPPPQPSPMEQAQARDWEAAQEFERQQRQEATARDIAAQQKAAADA
                     AWMSSKNAAYTGALSGGTNRLNAMGISSGDPYGVYDQFTNRINTANQSLQTGADYSTA
                     FNPSILDEILGTARTGQRNKYTSAFNQQVSPYYAEDTFGATSDDAILGSILDQQYSDA
                     MADLDAAKGRGQASQAVYDRALRDLGTAKYTANTDLQNIGRGVRESDINAVNQRRQAA
                     LDAASNWDFGTTYDPTGEANRLRSYAGERQQGLEGELRGAV"
BASE COUNT          809 a          715 c          783 g          660 t
ORIGIN      
        1 cccaacgatc cagccaaccg tgatcgtgct gagtacgagc aatggctcgc agacggcggt
       61 gtgcccgatc cttacacgcc acctgaacca acgccaccgc acgcatcaca ggaagcgacg
      121 gtgctgtacg accatgagaa ccgtttgcgc tcgctggaag gacaaccgcc gctagcactt
      181 gcagacttca ttaacaaaaa gatgacatga tactcacact catcatgctc acacaactcg
      241 acggctcgcc gatctgggtc gagagtacag cagtgcaagc aatcaggcca gcagtgcact
      301 cacactgcca caatccgcat ggcgctgcta ttcgtttaag tggtataggc ttgtgtgtaa
      361 aagagacacc tgagcgagtt cgtgagaagt tgcgagaggg gcgttagtta tgttgttaga
      421 actacatggc aatgttagct ggttcggtgg acctatggat gaaggcgtca gtcctgatga
      481 accactcgca ttcatatacg atgtagaaga cgcgccgttc ttgttcttaa cacaccaacc
      541 gcctaacacc acaggtctag ctcgtaggct caacccacgt gtgcactaca tcgcttgtcg
      601 atgggactac gatgtaacac ctcgtgagat gttgttgaca caaacagcac tagtacgcgc
      661 acctaagact ggcgtcatac tacgtgcgtt ccctgctgat tggggaccac acaaagacac
      721 aggcagagta gccgacataa gttcggggct gatgaaggag ttgatgatag aaactgacga
      781 cgaagtacac gtgatcttcc cttataccta caacagaaat gaaggagttg cataatggct
      841 caagtacctg tctcaatgca agttatcatc tacccacgtg acaagagcat cgacccatat
      901 ccagcaacga tagttggcta tgcgtggatc actggtcttc aagttggtgg tggtccaatg
      961 ccgggaggtc gtcccggtga tgcacaccct gagcatccta tcgtacttcc tcctattgaa
     1021 gaaccacctc ctgttgaaga aacaggtgtt ggtatcacta tcactgtcaa gaaggcacct
     1081 gagagtggtg gttggggcgt taacactgac gaaggttggt actacgcacc cggtgcaggt
     1141 caagcgggac cgaaaaggag gtgagagtag atgccgttga agaaatcaac gagtaaagct
     1201 gcgttcaagt cgaatatacg tgctgagcgc aaagctggca agccgcagaa gcaagctgtt
     1261 gctattgcct acagtgtgaa gcgcaaagca gcaaggagta agtaacatga tcggtactat
     1321 cataggactg atcttcgtac tcattatcct cggcgcgata tggtggggag cgcagcagtt
     1381 gttagctctc atatcattag gcgaaccgtt caacactatc atccgtgtgt tgatgggcat
     1441 tatcacggta atcatcgtga tatgggtact gatagtgttg cttggtattg ctggtataaa
     1501 cgtcaacatg ccaaggataa gttgacgccg tgaaagtaga actactaaac acaccacagc
     1561 aaggtgtgga cattgagaag ctagcgcaac tgcatcacga cgagttcggc ggcagtcgtc
     1621 aattcaacgt gcttgcagtt gcgcgcgctg tttggcaatg tgtacgcgat ccagagagga
     1681 agtacctcaa tgcgtggatc ggttacgaca acgcggatcg tcctgtgggc tatattgttg
     1741 gtactattcg cccttctctt tatagcctta gcgatatagc gcaacaggag atgtggtttg
     1801 ttgtacctga gcatcgcagc ggtttgatag ctgcaatgct actgtggcat ttcgagaagt
     1861 gggctgctag caaaggcgtt gaacacatct acacgcaagt cgaacacgat gagaagcctg
     1921 aaatagtcga acgcattatc gccatcatga atagattagg ttataagaag caaggctaca
     1981 tcgctgtgaa acacatcaag cagaaaggta acgaagatga tcgcaccaca catagcggcg
     2041 tgggcgttgc gcaaagagaa gaagttgaac gacaacgagc tacacgctga cgctggcaac
     2101 gctactgaca ttcctaacag cgcacgtagg aagcctaaga aggttgacga gcgcgtgttg
     2161 cagactaaag gtggcggtgg ttatgttcca cctccgcagc cttcacctat ggagcaagcg
     2221 caagctcgtg attgggaagc tgctcaagag tttgaacgac aacagagaca agaagctaca
     2281 gcgcgcgata tagctgcaca acaaaaggca gccgcagatg ccgcgtggat gagcagtaag
     2341 aatgcagcct atactggtgc gctgtcaggt ggcactaaca gacttaatgc aatgggcatt
     2401 tcgtctggcg atccctacgg tgtatacgat caattcacca accgcatcaa cactgctaat
     2461 caatcgctgc aaactggtgc tgattactcg actgcattca atcctagcat ccttgatgag
     2521 atactaggta cagcgcgtac tggtcaacgt aacaagtaca ccagtgcatt caatcagcaa
     2581 gtctctccgt actatgctga agacaccttc ggcgcaacta gcgatgatgc catcttaggt
     2641 agcatactcg atcaacaata cagcgatgca atggctgatc tagatgcagc taaaggtcgt
     2701 ggtcaggcta gtcaagctgt ttatgaccgt gcactgcgcg accttggcac tgctaagtac
     2761 actgctaata cagacttgca gaatatcggt cgtggtgttc gtgagagcga cattaatgca
     2821 gtcaaccaac gtcgccaagc agcgcttgat gctgctagta attgggactt cggcactaca
     2881 tacgacccaa ctggtgaagc taatcgtctg cgtagctacg ctggtgagcg acaacaaggg
     2941 cttgaaggtg aactgcgtgg tgcagtg
//
LOCUS       DATCGC010000203         1356 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_435545, whole genome shotgun sequence.
ACCESSION   DATCGC010000203 DATCGC010000000
VERSION     DATCGC010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1356)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1356)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1356
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_435545"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..469
                     /locus_tag="VIJ87_02005"
     CDS             <1..469
                     /locus_tag="VIJ87_02005"
                     /inference="COORDINATES: protein motif:HMM:NF012700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443251.1"
                     /translation="NTVLALAGAPVRARRLRISPLQIGASIRIQDSLQAGASKFYAEI
                     TRLRQIVDLTKSDLPVLFLLDEILHGTNSHDRKIGAEGVVRGLVNRGAIGLVTTHDLA
                     LTQIVEQLNSRAANVHFEDHLEDGKMTFDYLLRPGVLLKSNALELMRSVGLDI"
     gene            complement(681..>1356)
                     /locus_tag="VIJ87_02010"
     CDS             complement(681..>1356)
                     /locus_tag="VIJ87_02010"
                     /inference="COORDINATES: protein motif:HMM:NF015679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HEY5443252.1"
                     /translation="KRKHSSPSRQLTRSETKAAEQRLSEMGYSTGRVDGSIDGTTRSG
                     LIVFQKWEGRKVTGRLTRDEFEAIMSAEAPQPKDSGYKHVEVNVDRQVLLLTDNEGKV
                     QRILPVSTGSNKRYHEKRMSGLAYTPRGRFRIYAKISGWRKSPLGLLYYPNYFSDGLA
                     IHGNPSVPNLPESHGCVRIPMSSAIAIYKQLRVGTIVLIYDNESFVSAKDWAEADKQK
                     DALSVK"
BASE COUNT          294 a          352 c          372 g          338 t
ORIGIN      
        1 gaacacggtg ctggctctgg ctggagcccc ggttcgcgcg cggcgtttga gaatatcgcc
       61 gttacagata ggggcttcga ttcgcatcca ggattctttg caggcaggcg cttcaaagtt
      121 ctatgcagag atcacccggc taagacaaat tgttgacctg acgaagagtg acctgccagt
      181 gctctttcta ctcgacgaaa ttctgcacgg cactaattca cacgaccgga agatcggtgc
      241 cgaaggagtc gtgcgcggac tcgtcaatcg aggtgcgatt ggcctggtaa ccacgcacga
      301 ccttgctttg actcaaatcg tcgagcaatt gaattccaga gctgcgaatg tgcacttcga
      361 agatcacctt gaagacggaa agatgacttt tgactatctt ctccgtcccg gagtgttgct
      421 gaagagcaac gcgttggagt tgatgcggag tgtggggttg gacatctaag cctaaattcc
      481 actcacggca gtgggtggat tgtttcaagt cctacctaca aggcgagtac ttaaagattt
      541 tcagcgcagc gcgcggagaa cgaggcgggg cgttaagggg aaagcatcgt tccgcaggtt
      601 ggacttgcac catccaccaa ctgccgtcgg tgggattccg caagagccag tcacctccgg
      661 attggtggtt gggtttgaac ttatttgacg ctcagggcgt ccttttgctt gtcggcctcg
      721 gcccagtctt tcgcggagac gaatgactca ttgtcatata tcagcacgat tgttcccacg
      781 cgcaactgtt tgtaaatcgc aattgctgag gacatgggaa tgcgaacgca accgtgactc
      841 tccggcagat tgggaacaga agggttcccg tgaatggcca gtccatcgct gaagtagttg
      901 ggatagtaga gcagaccgag tggtgacttt cgccagccgg aaatcttcgc atagatccgg
      961 aaccgacctc gtggagtgta agccagacca ctcatgcgtt tttcgtggta tcgcttgttg
     1021 ctgccggtcg aaacgggaag gattctctgc accttgcctt cgttatcagt taacaagagt
     1081 acctggcgat cgacattcac ctcgacgtgt ttgtatcctg aatcttttgg ctgcggtgct
     1141 tcagcactca tgattgcttc aaactcgtcg cgagtaagac gtcccgtgac tttgcgccct
     1201 tcccacttct gaaaaacgat caacccactc ctcgttgtgc catcgatcga tccgtccact
     1261 cgtccagtgc tgtaacccat ctccgagaga cgttgttcag cagcctttgt ctcggatcga
     1321 gttaactgtc ggctcggcga agagtgcttc cgcttt
//
LOCUS       DATCGC010000204         2268 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_169392, whole genome shotgun sequence.
ACCESSION   DATCGC010000204 DATCGC010000000
VERSION     DATCGC010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2268)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2268)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2268
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_169392"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..226)
                     /locus_tag="VIJ87_02015"
     CDS             complement(<1..226)
                     /locus_tag="VIJ87_02015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443253.1"
                     /translation="MFVATGTLFHPKPDVLRIPKPYHLGAPRLGTPQLFRIHAVTSII
                     QLLANDGGDRLRQEPERSSRCMPGYLMQLVK"
     gene            369..>2268
                     /locus_tag="VIJ87_02020"
     CDS             369..>2268
                     /locus_tag="VIJ87_02020"
                     /inference="COORDINATES: protein motif:HMM:NF013106.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase domain-containing protein"
                     /protein_id="HEY5443254.1"
                     /translation="MASKYSPKAIINTPPEERRTLLSRFWLPSVILLALAAGGLTGII
                     AAYELNYSPAATEVAALATYRPSVVTRVYADDGETVIGEFALEKRIPLKYEDIPPQLK
                     NAILAVEDVRFYDHIGIDPIRIVGAGWKTLTTDKVEGGSTLTQQLTKNLFLSKEQTLT
                     RKVNEWILALQIERYYTKNQIMELYVNHMFLGANAYGMEAGAETYFGKQAKDLTLGEA
                     AMLAGVPKAPSEYSPTANPVKAKERRDLVLELMAKNGFVSQAEADAAKAKPIQLADTA
                     YYQSSNKSSPFDYPVEAIRQELEDKYTTRVAQGGLSVYTTINVEAQKRAYDVIRAGLR
                     NYDKTHSGWRSSYTPIPTASNNADGLPTQQELTSYKHPDWYGNDYEPGRHLMGLIMKV
                     DRVRNEATVRFGNFTSTLTVADMGWGHRQPKDEFKNGYLGEFEIKEVDEKNRRLKVEL
                     SQVPAVQGAMMTLNAKNGEIVTMVGGYDFYTNKFNNAIQAYRQTGSCFKPFIYTAAVE
                     WGMTPDTTVSGAPISIGDWQPHNYDGSSGCADLPMKTALAKSMNIPAVHLLQTVGIQT
                     GAQMVRRFGIKVPMSPYLPSALGATEVPLDQMVSAYSAFPNKGIRVEPHMIRKVLDRD
                     GGPLEEWEH"
BASE COUNT          583 a          574 c          598 g          513 t
ORIGIN      
        1 ttttaacgag ctgcataagg tagcccggca tgcatcgcga cgatcgttca ggttcctgtc
       61 gaagcctgtc gcccccatca tttgcgagca attggattat agacgttacc gcgtgaattc
      121 ggaaaagctg cggtgttcca agcctcggtg cgcccaagtg gtacggcttg ggaatgcgta
      181 aaacatcagg ttttggatgg aaaagcgtcc ccgttgcaac aaacatacag gccaaattct
      241 atttcgcgct tttagggcgg ctcggtttac taagctataa tttgggcgcg aaagatttgg
      301 ctgtggctag ccacgttgcc gccgggattc ctattcgggc aagttaggtt tgggggaaaa
      361 cgaaatctat ggcttctaaa tactctccaa aagcaattat caatacgcct cctgaagaac
      421 gacgaactct gctcagccgt ttctggctgc cttcagtaat tctgttggca cttgctgccg
      481 gaggtttgac cgggatcatt gcagcttacg agttgaacta ttcgccggcg gcgactgaag
      541 tggcagcctt ggctacatac agacctagtg ttgtgactcg tgtctatgcg gacgacggcg
      601 aaaccgtcat tggcgagttt gcactcgaga agagaatccc actcaagtac gaggacatcc
      661 ctccacaact taagaacgcc attctcgcgg ttgaagacgt acgcttctac gatcacatcg
      721 gaatcgatcc catccgcatc gtcggtgcag gttggaaaac tcttacgact gacaaagtcg
      781 aaggtggttc aactctaacg cagcagctaa ccaagaatct gtttctctca aaagagcaaa
      841 ctctaactcg caaggtgaac gagtggatcc tcgcgcttca gatagaacgc tactacacca
      901 agaaccagat catggagttg tacgtcaatc acatgtttct tggtgcgaac gcctatggga
      961 tggaagcggg agcagagacg tacttcggta aacaagcaaa agacctgact cttggtgaag
     1021 cggcaatgtt ggccggcgtt cccaaggcac caagtgagta ttcaccaact gcaaatcctg
     1081 tcaaagctaa agagcgccgc gatctagtgt tggaattgat ggcgaagaat gggttcgtca
     1141 gccaggccga agctgatgct gccaaagcga aaccgatcca actcgcggat acggcctact
     1201 atcaatcgtc aaacaaatca tcgccgtttg actacccggt cgaagccatt cgtcaggagc
     1261 ttgaagacaa gtacaccact cgagttgcgc aaggcggcct gtcggtttac acgacaatca
     1321 atgtggaagc tcagaagcgt gcctatgacg tcattcgcgc tggacttcgg aattacgaca
     1381 agacccacag cggttggcgc tcgagttaca cgccgattcc gactgcgtcg aacaatgcgg
     1441 atggtctacc aactcagcaa gagctgacca gttacaagca ccccgactgg tacggcaacg
     1501 attacgaacc tggtcgtcac ttgatgggat tgatcatgaa ggtcgaccgc gttcgcaacg
     1561 aagcaacggt gcgctttggc aacttcacct caacacttac tgtggccgat atgggttggg
     1621 gtcatcgtca gccgaaggat gaattcaaga acggttacct tggcgagttt gagattaagg
     1681 aagtcgatga gaagaatcgt cgattgaaag ttgagctatc gcaagttccc gctgtacagg
     1741 gagcgatgat gactctcaac gccaagaacg gtgagattgt aacgatggtt ggtgggtacg
     1801 acttctacac aaataaattc aacaacgcca tccaggctta tcgtcaaaca ggttcgtgct
     1861 tcaaaccatt tatctacacc gccgccgttg agtggggtat gactcccgat acaaccgtca
     1921 gcggcgcacc gatcagcatc ggcgactggc agccacacaa ctacgatggc tcaagtggct
     1981 gcgctgatct gccaatgaag acggcactcg cgaagtcgat gaatatcccg gctgttcact
     2041 tgttgcagac ggtcggcatt caaaccggcg cacagatggt tcgtcgtttt ggaatcaaag
     2101 tcccgatgtc gccatattta ccgtcagcat taggtgcgac cgaagtccca ctcgatcaga
     2161 tggtgtcggc ctattcggct tttccgaata aaggtattcg agtcgagcca cacatgattc
     2221 gcaaagtgct ggaccgtgat ggtggtccgc tcgaggagtg ggaacaca
//
LOCUS       DATCGC010000205         1510 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_335763, whole genome shotgun sequence.
ACCESSION   DATCGC010000205 DATCGC010000000
VERSION     DATCGC010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1510)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1510)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1510
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_335763"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1480
                     /gene="gpmI"
                     /locus_tag="VIJ87_02025"
     CDS             <1..1480
                     /gene="gpmI"
                     /locus_tag="VIJ87_02025"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR01307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046537 -
                     2,3-bisphosphoglycerate-independent phosphoglycerate
                     mutase activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HEY5443255.1"
                     /translation="NAIVLAATPYYDELVAKYPQTLLEAHGSRVGLPAGVMGNSEVGH
                     LNIGSGRVVRMDVSLVDHEIGTGEFFRNQALTKAMEGAKKRGTALHLMGLLSDGQVHS
                     SLTHLYALLQMAKSHDLRRVYVHCFLDGRDTPPASSSTYLAALQRKMVELGCGQIASI
                     VGRYYAMDRDKRWDRTQRAYDLLVRGVGERTVDPLEALAQSYQQGITDEFVEPHLIVR
                     QSGEPVATIQNDDAVIFFNFRPDRARQITRALAVPDFAEFPIPDRPRVDYVCFTTYDS
                     TLPLAVAFPPRHHRNVLAEVFGALGTSNYRMAETEKYAHVTYFFNGGVEQEYPCEKRL
                     LVPSPKVATYDLQPEMSAFGVTDKVLRGIDERETDVFVINFANPDMIGHTGKLDKTIE
                     ACQYVDTCLGWITKSIRQHKGITLITADHGNAEQMIDRLTGSPHTAHTTNPVPFHLVD
                     EGSIGMKLREGGALEDVAPTMLGLLGLEQPAEMTGKDLRLEG"
BASE COUNT          352 a          400 c          403 g          355 t
ORIGIN      
        1 aaacgcgatc gttcttgcag caactcctta ttacgacgag ttggttgcga agtatccaca
       61 gactctactt gaagcgcatg gttcacgtgt tggtttaccc gcaggcgtga tgggcaactc
      121 ggaagttggt catctaaaca ttggatcggg tcgcgtggtt cgcatggatg tttctctcgt
      181 cgatcacgaa atcggaaccg gcgaattctt ccgcaaccag gctttgacga aggcgatgga
      241 aggcgcaaag aaaagaggca ccgcgcttca cttaatgggt ctcctctctg atggtcaggt
      301 tcactcttcg cttactcatc tgtacgccct gctgcagatg gccaagagtc acgacttgcg
      361 gcgcgtgtat gttcattgtt tccttgatgg gcgcgacact cctcctgcgt catcaagtac
      421 ttatcttgcg gcgcttcaac gaaagatggt tgagctgggg tgcggtcaga tcgccagcat
      481 agttggtcgc tattacgcga tggaccgcga caagcgctgg gaccggacgc agcgtgctta
      541 cgatctactc gtgcgcggag ttggtgaacg aaccgtggat ccacttgagg ccctggcgca
      601 gtcgtatcaa caaggcatca ccgatgagtt tgttgagcca catctgatcg tccgtcaaag
      661 cggtgagccg gtggcgacga tacaaaacga cgacgctgta atcttcttca acttccggcc
      721 cgatcgcgct cgtcagataa cccgtgccct ggcagtgccg gacttcgcgg agtttcctat
      781 tccggatcga ccgcgtgtcg actatgtgtg ctttacaacc tacgacagca ccttaccgtt
      841 agctgttgcc tttccacctc gacatcatcg caatgtgctt gcagaagttt ttggtgcgct
      901 cggcaccagt aactatcgaa tggctgaaac tgaaaagtac gcacacgtca cttacttttt
      961 taacggcggc gtcgaacagg aatacccctg cgagaagcgc ttgttggtgc cctcgcctaa
     1021 agtcgcaacc tacgatttac aacctgagat gtctgcgttc ggcgttacag acaaagtgct
     1081 tcgaggaatt gacgaacgcg agaccgacgt gttcgtgatc aactttgcca acccggacat
     1141 gattggccac acaggtaaac tcgacaaaac gattgaagct tgccagtacg tcgacacttg
     1201 tctgggttgg atcacgaaaa gcattcgaca gcacaagggg attacgttga tcaccgctga
     1261 ccacggaaac gccgaacaga tgatcgaccg tctaaccggt agcccacaca ccgcacacac
     1321 cacgaatccg gttccctttc acttggtaga cgaaggttca atcggaatga agcttcgcga
     1381 aggtggggca ctcgaagatg tcgcgccgac gatgcttggc ttgcttggat tggaacagcc
     1441 tgctgaaatg acggggaaag atcttcgctt agaaggctaa cagaaaggca tcatttatca
     1501 ttggccattt
//
LOCUS       DATCGC010000206         1518 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_435562, whole genome shotgun sequence.
ACCESSION   DATCGC010000206 DATCGC010000000
VERSION     DATCGC010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_435562"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(693..836)
                     /locus_tag="VIJ87_02030"
     CDS             complement(693..836)
                     /locus_tag="VIJ87_02030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443256.1"
                     /translation="MTSLNPGKRQITSGQLDHDTGDKVKVFIVFDFDFTDSQARIDRA
                     DRE"
     gene            1267..>1518
                     /locus_tag="VIJ87_02035"
     CDS             1267..>1518
                     /locus_tag="VIJ87_02035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443257.1"
                     /translation="MKLQKRILLIIAAIVATLGVSNAQVKQNISEEKLTDLLGRIDVS
                     TEHFVKSADKAMDKAGYDGSPREDELNTILKNLKSSTNAL"
BASE COUNT          408 a          379 c          355 g          376 t
ORIGIN      
        1 cgagtcgtct tcatcccgca accctatgat ggcgcggtat ggataaccac caagattctt
       61 agctcctcca taatatgcga cgtcatattt ctttatctct ttcaatgcca tccagaaatc
      121 tccggtatgc tcataattct caattcagat cgtcatcaac agacttatct ccagacgttg
      181 gcggttatct tgaaactagc agacgattgc gtgaagcgta cctgttaaaa gttctaggac
      241 gatgatcaga tctaaacaag cactcaactc tgtcgatttt ttacgattgg tcgagcagag
      301 cgattacccc tacgatgcag gaaaggcagg aagcccaaaa aagccgacac gttcaacctc
      361 tagtgtaggc gggggtagtc ttgctgtgcc ctgtcaaaaa taccagtctc tcctggttca
      421 cgcgttcgat gataactgga gtggaccatg ttttctttcc gtgctcccct ttctaatcct
      481 cgctagaggg cgcacttcag gatggtaatt ttcagattca acctaaagca ctgatcacca
      541 tatgtcgcgg aacccgcgaa atacggcgac ggtcactcga gctttgctcg catcgtcgcg
      601 atacccagaa agtagtttaa cttcttctta gccacgcgct tatctatcgc cttccatcat
      661 taggattctt ctggccccga atttgaaagc acttattccc gatcagcacg atcaattcga
      721 gcttgtgagt cggtgaagtc gaagtcgaaa acgataaaaa ctttcacctt gtcaccggtg
      781 tcatgatcaa gttggccgct agtgatttgg cgcttacccg gattcagcga agtcattaat
      841 ggagagcttc cctaatgaat aacaacacca ttcccgaacc aattttgcat tgtgaacgag
      901 accttaacca accggttgat gagctacggt ctagtgcttc tccaatttgg tcagcaaata
      961 caacggagaa gcaactgatc tggtcgtcac acaaaccggg tgagtgggag atccttgttt
     1021 acaagcaaac cgagttttgg gaagcgtgct tttttcgctg gcccctacat cacgaacatg
     1081 caaccggatc ttcattcgat tcggtgaagc aaagagctga gcagcgaata cgtaccctcg
     1141 aagccggtcg cctaaggggg acccggtggc agggaacaat tcattagtgt tagcccttca
     1201 ggctttgtga aaaaaagaac cctggctgcc acgccccgac ggcagacctt aactaaggag
     1261 agcgagatga aattacagaa aaggatcttg ttaatcatag cggcgatcgt ggccaccctc
     1321 ggggtatcga acgctcaagt gaaacagaat atttcggaag aaaagctgac cgaccttctg
     1381 ggtcgcattg atgtgagcac agagcatttc gtcaagagtg cggacaaggc gatggacaag
     1441 gctggttatg atggctcacc cagggaggat gagctcaata ccatcctaaa gaaccttaag
     1501 agctcaacca atgcgttg
//
LOCUS       DATCGC010000207         1587 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_69315, whole genome shotgun sequence.
ACCESSION   DATCGC010000207 DATCGC010000000
VERSION     DATCGC010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1587)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1587)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1587
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69315"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1399)
                     /gene="hutH"
                     /locus_tag="VIJ87_02040"
     CDS             complement(<1..1399)
                     /gene="hutH"
                     /locus_tag="VIJ87_02040"
                     /EC_number="4.3.1.3"
                     /inference="COORDINATES: protein motif:HMM:NF006871.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004397 - histidine ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ammonia-lyase"
                     /protein_id="HEY5443258.1"
                     /translation="MIYLSGQPLSLKQIADVAYGREDVSLSDQARVRVNDARSVVEGI
                     VAEGRTVYGVNTGFGKLSDVSIKSSELRDLQLNLVRSHACGLGKPLSEAEARAMVLLR
                     ANVLAAGFSGARPLVIDTLIAMLDGGVTPVIPEKGSVGASGDLAPLAHLASTAIGEGE
                     AFYKGERIASAVALERAQIEPLRLEVKEGLALLNGTQAMGAVGGLALYRAERLVRLAD
                     VAGAMTLESLRGTPVAFDQRIHTARPHAGQLAVASHLRDLLQDSEIRKSHLNNDPRVQ
                     DAYSLRCMPQVHGAVRNALLHARETLEIESGSATDNPLVFADTGEVLSGGNFHGAPVA
                     LVLDYAAIAVTDLMSITERRIDRLVNPDSNEGLPPFLTSQPGISSGFMMLQVSAVALL
                     NEAKVLAHPASVDNVPTDGGKEDHVSMGMTSATKLRSIVDIAEMATAIELLTAAQALD
                     FRVPLKPGKGVRQAHE"
BASE COUNT          383 a          465 c          397 g          342 t
ORIGIN      
        1 tttcatgggc ttgcctgacg ccttttcccg gtttgagcgg aacgcgaaaa tcgagggctt
       61 gcgcggcggt cagtaactca atcgcggtgg ccatctcagc gatgtcgaca atggaccgca
      121 actttgttgc tgaagtcatt cccatcgaga catggtcttc cttgccgccg tcagtcggaa
      181 cgttgtcgac acttgccgga tgcgccaaca ccttggcctc attcaacaaa gccacagcag
      241 agacctgcaa catcatgaag cctgaagaga ttccgggctg ggacgtaagg aacggcggta
      301 gaccttcatt cgaatccggg tttacgagtc gatctatcct gcgttcggtg atactcatca
      361 aatcagtcac agcgatggcc gcgtagtcga gaacaagcgc gaccggggca ccatgaaaat
      421 tcccacctga caggacttca ccagtgtcag caaaaaccaa cgggttgtcg gttgcgcttc
      481 cactttcaat ttcgagagtc tcacgcgcgt gcagcaaagc attacgcacg gcaccgtgaa
      541 cttgcggcat gcagcgcaaa ctataagcat cctgcacacg tggatcatta ttcagatgag
      601 acttccgaat ttcactgtct tgaagtaagt cgcgcaagtg tgacgcaact gccagttgac
      661 cagcatgtgg acgcgccgtg tggatacgct gatcaaatgc gactggagtt ccgcgcagtg
      721 attcgagagt catcgcccca gcgacatccg caagtcgaac taacctttcg gcgcgataca
      781 gggccaaccc gcccacggca cccatcgcct gcgtaccatt aagtagggcg agaccctctt
      841 tgacttccaa acgaagcggc tcaatttgtg ctctttcgag tgcgactgca ctcgctatcc
      901 gttcgccttt atagaacgcc tcgccttcgc caattgccgt ggacgctaag tgtgcaagcg
      961 gggccaggtc accactagcg cctaccgatc ccttctcagg aattactgga gtgacaccac
     1021 cgtcaagcat tgcgatcagc gtgtcgataa ccaacggacg cgcgccactg aaaccagctg
     1081 ctaacacatt agctcgcaac aacaccatgg cccgggcctc ggcttctgag agaggtttac
     1141 cgagcccgca cgcatgacta cgcaccaggt taagttgcaa gtcgcgcaac tctgacgact
     1201 taatgctaac gtccgagagc ttgccaaagc cggtattgac accgtagacc gttcgccctt
     1261 cagcaacgat tccttccacg acgctgcgcg catcattcac tcgaacacga gcttggtccg
     1321 acagagaaac gtcctctcga ccataagcta cgtctgcgat ttgtttgagg gatagcggtt
     1381 gtccgctgag atagatcatt gccgatttcc gagtgccaat tgccgatttg tgctattcac
     1441 gatatacgcg ttaacgcaga ttaagaccta accgctcata agacatcggc tcaatcgctg
     1501 aaaatccatg tcttgaaagt ctggggggtt aacgacaagc taaccggaca atctgaaatc
     1561 ggcaatcggc aatgacctac ccgcccc
//
LOCUS       DATCGC010000208         2317 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_69361, whole genome shotgun sequence.
ACCESSION   DATCGC010000208 DATCGC010000000
VERSION     DATCGC010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2317)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2317)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2317
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69361"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..560
                     /locus_tag="VIJ87_02045"
     CDS             <1..560
                     /locus_tag="VIJ87_02045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443259.1"
                     /translation="SLSILALLLFQGVISSSDKLPPYENQEAYEVYSAILPSEWLLRT
                     GAKTVFIQNETKGFGMCLRPENEWQERVGPAISDYVRSNAKPSLLQRRIKVEVPYQLI
                     IADELRSTNSTAGWEAFFQRYPDSRGWIELSAVGFNVNKTVAVVYMGHHCGPLCGGGG
                     FHVLEKKDGKWVALNWMGSSCGWAA"
     gene            667..1065
                     /locus_tag="VIJ87_02050"
     CDS             667..1065
                     /locus_tag="VIJ87_02050"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY5443260.1"
                     /translation="MTPVEISGISPFFIVNHVPSSLAFYRDQLGFEITFQGPDPDDIF
                     FGIVRRDGAQILMKEVGVAPVPNYTRDIGKGMARWDAFVSVPDPDALAAEFASRNVEF
                     FEPLRDTYDGLRGFELKDADGYLLFFGRTR"
     gene            1072..1653
                     /locus_tag="VIJ87_02055"
     CDS             1072..1653
                     /locus_tag="VIJ87_02055"
                     /inference="COORDINATES: protein motif:HMM:NF037206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcxB family protein"
                     /protein_id="HEY5443261.1"
                     /translation="MSEPVTLIFTHREKEYIAAVRLFYARAYHTRFLIVIFSIVLSFG
                     LVLLLMNVDFLLGAVPIVVGLILLVINVYVYFVAPSQYFRRNAKFQEEYDLRFSEDGL
                     LFRSKNMESKLEWSFYSRIWETQKYYFLFYDKDLFTLIPKRVFTSERQEWAFQDLLRR
                     KVDANFETPRPLPKERREFQAEQTPPQSPPDWR"
     gene            1780..2163
                     /locus_tag="VIJ87_02060"
     CDS             1780..2163
                     /locus_tag="VIJ87_02060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443262.1"
                     /translation="MEFLLQIFLEFLLQVVGGVITDVVLHALSRFIRSSRTLNALVTL
                     IMYLGLGLFVGWLSILIFPKAFVRSSNLHGLSLLITPALAGFTMSALGWIRLRQRKTL
                     IRLETFSCGFVFAFGMALIRLLFTA"
BASE COUNT          533 a          528 c          603 g          653 t
ORIGIN      
        1 catcattatc aatcttagct ttgttgttat ttcaaggtgt tatcagtagt agcgacaagc
       61 tacctccgta tgagaaccag gaggcatatg aggtttattc agctattctt ccatcggaat
      121 ggcttttgag gacaggtgct aaaacggtgt tcattcaaaa cgagacgaag ggttttggaa
      181 tgtgcttgcg cccggagaac gaatggcagg agagagttgg gccagcaatt tctgattacg
      241 tcagatcgaa tgcaaaaccg tcactgcttc agcgaagaat taaagtcgaa gttccatatc
      301 aactgatcat cgctgatgaa ttgaggtcca caaattcaac agctggctgg gaagcgtttt
      361 ttcagcgtta tccagattca cgtggttgga ttgaactatc ggccgtaggg ttcaacgtca
      421 ataagacggt ggcagtggtc tacatgggcc atcactgtgg cccgctttgt ggcggcggcg
      481 gttttcatgt cctcgagaaa aaagatggaa agtgggtcgc cctcaactgg atgggatcaa
      541 gctgcggatg ggcggcgtga tcaggctcat ataaggaatg gcgggagagt tagatcgtct
      601 ttattaagtt gcgtatgcga gcctgctcaa gcccgaacgt tcggcggaaa gcaaggagca
      661 gtacacatga caccagttga gatttcaggt atctcaccct tttttatagt gaaccacgta
      721 ccgtcatcgc ttgcgtttta ccgagaccag cttggatttg agatcacttt ccagggccct
      781 gatcctgatg acatcttctt cggcatcgtt cgcagggacg gggcgcagat cctaatgaaa
      841 gaagttggcg tcgcaccggt gccgaactac acacgcgaca tcgggaaagg tatggcccgt
      901 tgggacgcat tcgtgagcgt tcccgatcct gacgcactgg ccgccgaatt tgcttcgcgc
      961 aatgtcgagt tcttcgaacc actgagagat acgtatgacg gtttgcgtgg tttcgagctc
     1021 aaggacgccg acggctacct cttgtttttc ggtcgtactc ggtgattaag gatgtcagaa
     1081 ccggtaaccc taatctttac gcatcgtgag aaggaatata ttgcggcggt acgcttattt
     1141 tacgctcgtg catatcacac acgatttctc atcgttattt tcagcatcgt tctttctttt
     1201 ggcctggttc tattattgat gaatgtggac ttcctgctag gcgccgtccc tatagtcgtt
     1261 ggccttatcc ttctggtcat taacgtctat gtctattttg tcgctccctc tcagtatttt
     1321 aggcgtaatg ccaagtttca agaggagtac gatctgagat tctccgaaga cggcttattg
     1381 ttccgctcaa agaatatgga atcaaaacta gagtggagct tctattccag gatttgggag
     1441 acgcagaaat actatttttt gttttacgac aaagatttat ttacgttgat acccaaaaga
     1501 gtctttacga gtgagcgcca agaatgggcc ttccaagatc tattgagacg gaaagtagat
     1561 gctaatttcg agacaccgag accgttaccg aaagagaggc gcgagtttca ggctgagcaa
     1621 acaccgccac agagtccccc tgattggcgg taacagatca agtccacgct gcagcggaca
     1681 agctagattc ttgttgagtt gcggcggcga gccggtcttg tgagttatgg gactatcgtt
     1741 ggaaattaca ttcgcaaaaa aagcttctaa cgttggatca tggaatttct cctccagatc
     1801 tttttagagt tcctcctcca ggtcgtcggc ggagttatca ctgacgtagt tctccacgcc
     1861 ttatcacgtt ttatccgatc tagtcggact ctaaatgcgc ttgtaacact catcatgtat
     1921 ttggggcttg gtttgtttgt cggctggctc agcattttga tttttcctaa agccttcgtc
     1981 cgcagttcga atctgcatgg tcttagcctt ctgatcacgc ccgcattggc tggtttcacg
     2041 atgtctgccc tcggttggat tcgactacga cagagaaaga cgttgattcg tctcgagacc
     2101 ttttcatgcg gttttgtttt tgcttttggg atggctctga tcaggctatt gttcacggcg
     2161 taatcgggag gttgaggaaa ggaactggta ttcgatgtcg caagctgtaa tcgctcgccg
     2221 cggactcgcc gtgagcggcc tctacacacc cgggagttta accactctcg gtttcggtag
     2281 acattcaggc gcgtcagtcc aacggttgat cgcgtcg
//
LOCUS       DATCGC010000209         1920 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_69362, whole genome shotgun sequence.
ACCESSION   DATCGC010000209 DATCGC010000000
VERSION     DATCGC010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1920)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1920)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1920
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69362"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..253
                     /locus_tag="VIJ87_02065"
     CDS             <1..253
                     /locus_tag="VIJ87_02065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443263.1"
                     /translation="GVFLVGTFLRRVSQPPALIGMIASICAMLYVFFATKIAWTWYVL
                     LGSLITFIVAWLASFAFTPAPASMRDELAPAGASGSDEL"
     gene            243..>1920
                     /locus_tag="VIJ87_02070"
     CDS             243..>1920
                     /locus_tag="VIJ87_02070"
                     /inference="COORDINATES: protein motif:HMM:NF013126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HEY5443264.1"
                     /translation="MSFRSATKILHRVRQSVPQRGSVWLAQTLTRTSSASHTLPRRGT
                     DCMTPRNIHQMRRVTRSLSTALIAVLCLSMFVTGHAQQKIAPYNREPSSSALKWANKE
                     LDRMSLEEKIGQLISVGINATFLNQDSDAYRSLKHQIEDNHVGGLILFRGPVYESVIL
                     VNRMQQLAKYPLLISADLEAGAGMRFDDTINFPWNMAVAATGNPDYARRQGEVTAREA
                     RALGVQHVFAPVVDVNNNAANPVINVRSYGEDPADVARFAAAFTQGAQGAGVIATAKH
                     FPGHGDTAVDSHRGLPEINVARDRLNSVELVPFQSAINAGVGAVMVGHIALPQIDSAT
                     VKPLPKAVKGKPIDTDEAGEVVDEKATMPATMSPVMGAILRNDLKFQGMIVTDALSMS
                     GLTIYFTQDEAAVRALEAGADMLLKPGDVDAAFRGVLEAVKKGRLTEKRIEESARKIM
                     AAKYDLGLVKERLTPIETIDRTVSSREAAALATEIAEHAITLVRDENKLVPLAALKPD
                     AKVLNIAITNGDDRTTVATPFVSRLAKSGRKVETIALDDRSSDQEVQKTIE"
BASE COUNT          464 a          483 c          534 g          439 t
ORIGIN      
        1 tggtgtattt cttgttggca ctttccttcg gcgtgtaagc cagccaccgg cgctcatcgg
       61 gatgatcgcc agcatctgcg caatgttgta cgtatttttt gcgacgaaga ttgcatggac
      121 ctggtatgtg ctgctcggca gtttgataac gttcattgtg gcgtggctgg cgagttttgc
      181 ttttactcca gcaccggcat cgatgaggga tgaactcgca cccgctggag cgtcaggatc
      241 cgatgagctt tagaagtgcg acaaagattt tgcatcgtgt caggcagtca gtaccacaac
      301 gcggtagcgt gtggctcgca caaaccctaa cccgtacttc cagtgcgagc cacacgctac
      361 cgcgtcgtgg tactgactgc atgacaccga ggaatattca tcagatgcgt cgagttacac
      421 gttctctttc aacggccttg atagcagtgt tgtgtttgtc gatgttcgtg accgggcacg
      481 cacaacagaa gattgctcct tacaaccggg aaccctcatc ttccgcgttg aagtgggcta
      541 acaaagaact cgaccgaatg tccttggaag agaaaatcgg ccaactcatt tccgtcggca
      601 tcaatgctac ttttctaaac caggacagcg atgcttatcg aagtctgaaa catcaaatcg
      661 aagacaacca cgttggcggc ctcatcttat ttcgcggacc agtttatgaa tcagtgattt
      721 tggtaaaccg aatgcagcag ctcgcgaaat atccgcttct gatttcagca gacctggaag
      781 ccggcgcagg tatgcggttt gacgacacga tcaacttccc ctggaacatg gccgtggccg
      841 ccacgggaaa tccggactat gcacgtcgac agggagaggt aacggcgcgc gaagcaagag
      901 cacttggtgt gcaacatgtc tttgcgccgg ttgttgatgt caacaacaac gccgcgaatc
      961 cggtcatcaa cgtccggtcc tatggtgaag atccggcaga tgtagctcgt tttgccgcgg
     1021 cgtttaccca gggtgcgcaa ggtgctggcg tgattgccac agccaaacat tttcctggac
     1081 atggcgacac tgccgttgac tctcatcgcg gcttgccaga gatcaatgtc gctcgcgatc
     1141 gacttaactc tgtagaactg gttccgtttc agtcggcgat caatgccgga gttggcgctg
     1201 tgatggttgg ccacatagct ttaccgcaaa tcgattctgc gacagttaag ccattgccaa
     1261 aagcggtcaa aggaaaacca atcgacaccg acgaggccgg tgaagttgtt gatgaaaagg
     1321 cgaccatgcc cgccacaatg tcgccggtga tgggcgccat cttgcgaaac gatctcaagt
     1381 tccagggaat gattgttact gatgcgctaa gcatgagtgg actcacgatc tactttactc
     1441 aggatgaagc cgcggttcgt gcgctcgaag caggtgctga catgttactg aagccgggcg
     1501 acgttgacgc cgcgtttcgt ggcgtgcttg aggctgtaaa gaaaggacgt cttacagaga
     1561 aaaggattga agagtcggcc cggaagatca tggcggctaa gtatgacctg ggtttagtga
     1621 aggaacggct gacaccgatc gagaccattg atcgaacagt ttcgagcagg gaagctgcag
     1681 ctctcgcaac cgaaatcgct gagcacgcaa tcacacttgt gcgcgacgag aacaagctag
     1741 tgcctttagc ggccttaaag cctgatgcaa aagttctaaa cattgcgatc acgaatggcg
     1801 acgatcggac aacggtcgca acgccgtttg tttcgagact cgcaaagtcc gggcgcaagg
     1861 ttgagacaat cgcgttggat gaccgatcgt ctgatcagga agtacaaaag acgatcgagt
//
LOCUS       DATCGC010000210         1170 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_435709, whole genome shotgun sequence.
ACCESSION   DATCGC010000210 DATCGC010000000
VERSION     DATCGC010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1170)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1170
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_435709"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(118..999)
                     /locus_tag="VIJ87_02075"
     CDS             complement(118..999)
                     /locus_tag="VIJ87_02075"
                     /inference="COORDINATES: protein motif:HMM:NF013247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HEY5443265.1"
                     /translation="MHALIYLNKTMVEATKARVAPVSSAMLYGRGVFTTLAIYDSQPF
                     LWSKHWQRLAAHAEKIDVDLAGCTEKNVGEGLGKLVAVNQVKQGRARVILLGRTGRES
                     WKTKKSGDKKTDLLIMTGDVHKVPASGLSLAVSPYRITTSSPTSGVKSLNYLDRILSR
                     DEARSRDFDEAVVLNERGEIVSATTANIFWTKSGTVHTPSLATGAIAGVTRECVMEIA
                     EKHFIPLVEGVYEMNDLTDADEIFLTSSVIGVTPITTFDFRRYAIDSGSALSIIRDAF
                     AKLVGTGAVGRSSRQEQ"
BASE COUNT          285 a          325 c          278 g          282 t
ORIGIN      
        1 aggaaggtgc cgaaagcatc aacaattgag ctttcaaatt agcgcatttg agtggcttta
       61 gggaagcgtc agagacacta ggcagaaagc aggagcagta ggcagggcgc tacctgccta
      121 ctgctcctgc ctactgctcc tgcctactgc ccctgtccct accagcttcg caaaagcatc
      181 tcttattatc gacaacgcac ttcccgaatc gatcgcgtag cggcgaaagt caaacgttgt
      241 gatcggcgtc actccaatta cggacgacgt cagaaagatc tcatcggcat cagtgagatc
      301 attcatctcg taaacacctt caaccaaagg aatgaagtgc ttctcagcga tttccatcac
      361 gcactcgcgc gtaacgcctg caatagcacc ggtcgccagg cttggagtgt gtactgttcc
      421 actctttgtc cagaagatat ttgcggttgt cgctgacacg atttcaccac gctcgtttag
      481 caccaccgcc tcgtcaaagt cacgactccg cgcttcgtcc ctcgacagaa ttcgatcgag
      541 gtagttcaaa ctcttgacac cagacgttgg cgaagaagtg gtaatgcgat aaggcgagac
      601 cgccagggac aatccactgg ccgggacctt gtggacatcg ccagtcatga tcagaagatc
      661 agtcttcttg tcgcccgatt tttttgtttt ccaactctct cgaccggttc gccccaaaag
      721 gatcacacgc gcgcgaccct gcttcacctg atttacggcg accaactttc ccaacccctc
      781 gccaacattc ttctcagtgc aaccggcgag atcgacgtca attttttctg cgtgagcggc
      841 aagccgttgc cagtgttttg accacaggaa tggttgagaa tcgtagatgg ccagcgtggt
      901 gaaaacgccg cgaccataaa gcattgctga agaaaccggc gccactcggg ccttggtcgc
      961 ttcaaccatc gtcttgttga ggtagatgag cgcgtgcaca agcatgtggc acagacttca
     1021 gtctgtgtga gctacaataa ttgcgggtta actgtctcgg tcggaatcat tggtcatata
     1081 tcatttgaca tttatcagtt ggttatttga aatccgctct taccctgact cacaaagaca
     1141 gctcggtctt cgtcaatcga ccaaatgaaa
//
LOCUS       DATCGC010000211         1796 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_136026, whole genome shotgun sequence.
ACCESSION   DATCGC010000211 DATCGC010000000
VERSION     DATCGC010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1796)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1796)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1796
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136026"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            82..285
                     /gene="rpmI"
                     /locus_tag="VIJ87_02080"
     CDS             82..285
                     /gene="rpmI"
                     /locus_tag="VIJ87_02080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HEY5443266.1"
                     /translation="MPKLKTHKGAAKRVRLTATGKIKRGHSHARHILTKKTNKRKRQL
                     DIDGLVAKADHDRVMSMLPYGRD"
     gene            402..782
                     /gene="rplT"
                     /locus_tag="VIJ87_02085"
     CDS             402..782
                     /gene="rplT"
                     /locus_tag="VIJ87_02085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002639666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HEY5443267.1"
                     /translation="MPRAKRGNKRLERRKKILKLAKGYRGTKSKLYRSAKESVERGLN
                     FAYTGRKLKKRDFRSLWIVRIGAAARLNGLNYSQLMHGLKLAGSELDRKVLADLAVHQ
                     PESFASVVAQAKSALESEQQNKAA"
     gene            799..1479
                     /locus_tag="VIJ87_02090"
     CDS             799..1479
                     /locus_tag="VIJ87_02090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443268.1"
                     /translation="MKQTHKLVVASIAVLMFLVTAAYGQGDTLSGKYEGTAKSAGSPD
                     AQIALELKNENGKISGHATHGPATLEISEGTLADGKLTIKFAGAAKDGVLTLKVEGDK
                     LTGEWVDGSHKMTVELKKAAVAVAAATPVNLSGQWDAVADAQGQPFPFLLTLKVDGET
                     VSGSSSSQLGDSNIKSGTWKEGKLYFQLEGSNGVITMSATVVDGKLAGEFDFAGQLQG
                     KWVAVKKN"
     gene            1492..>1796
                     /locus_tag="VIJ87_02095"
     CDS             1492..>1796
                     /locus_tag="VIJ87_02095"
                     /inference="COORDINATES: protein motif:HMM:NF014909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443269.1"
                     /translation="MTDSEKEQTPSQQVEAASKAFEQEFERFVRFTDDANGVAGLSLE
                     GAIAEERALGEIRTRHLGKKSVLAGVKKLIGKVPAEERSGFGQLVQSAETEVVSKLNL
                     "
BASE COUNT          511 a          386 c          527 g          372 t
ORIGIN      
        1 agggcaaggc tgcgaagtcg ttgaagacga gaatctgcaa tctaaagtta aatctgaaat
       61 agatgataag gaagaataat tatgcctaaa ctaaagacac ataagggcgc agcgaagagg
      121 gtgcgactga cggctactgg caagatcaag cgtggccatt cgcacgcacg acacattctt
      181 accaagaaga ccaacaagcg gaagcgacag ctcgacatcg atgggttggt ggcaaaggca
      241 gatcacgatc gggtgatgtc gatgttgcct tacggtcggg actaattgaa ataataatgt
      301 ccgataagct ttagcttgtc gcgccgatta gacaagctgc agcgacgaca agctaaagct
      361 tatcggacat cgcatcggct ctaagaagaa aggggatcaa aatgcccaga gcaaaacgtg
      421 gtaataagcg acttgagaga cgtaagaaaa tattaaagct ggcgaaaggc tatcgaggaa
      481 cgaagtccaa gctctatcga tcagccaaag agtctgtgga gcgcgggttg aatttcgcct
      541 acacaggccg caagttgaag aagcgtgatt ttagaagcct ctggatcgta cgcatcggcg
      601 cggccgctcg cttgaatggt ttgaactatt cacagctaat gcatggtttg aagctggccg
      661 gcagcgaact tgatcgaaag gtgttggcgg acttggcagt tcatcaaccg gaatcttttg
      721 ctagcgttgt ggcgcaggca aagagtgctt tggaaagtga acagcaaaac aaagctgcgt
      781 agccagaagg agtcgcaagt gaaacagaca cataaactag tagtcgcatc aatcgctgtc
      841 ttgatgtttt tggtgacagc ggcttatggc cagggcgaca cgctttctgg caagtatgaa
      901 ggtacagcga aaagcgccgg ctcacccgac gcgcagattg cgctcgaatt gaagaatgag
      961 aatggcaaga tctccggtca cgccacgcac gggccagcta ctttagaaat ctctgaaggc
     1021 acactggctg acggcaagtt aacgatcaag tttgccggtg ccgccaagga tggagtacta
     1081 accttaaaag ttgagggcga caagcttacc ggtgagtggg tggatggaag tcataaaatg
     1141 accgtcgaac ttaagaaagc ggcagttgcc gtggccgctg cgactccggt taacttaagc
     1201 ggtcaatggg atgccgtggc cgacgcgcag gggcagccgt ttccgttttt gctgaccctc
     1261 aaagttgatg gtgaaacagt cagcggcagt agtagttcac agctcggtga ctcaaacatc
     1321 aaaagtggca catggaaaga gggcaagctc tattttcagc tggaaggttc aaacggcgtg
     1381 atcaccatga gcgcaaccgt cgttgacggt aagctggctg gcgagtttga ttttgccgga
     1441 cagttgcaag ggaagtgggt tgcagtcaag aagaactagc ggaattcttt gatgaccgat
     1501 agcgaaaaag aacaaacccc atctcagcaa gttgaagcag caagcaaagc gttcgagcaa
     1561 gagttcgaac gctttgtacg ctttactgac gatgcgaatg gggtagccgg cttaagtctt
     1621 gaaggagcca tcgctgaaga gcgcgcgctg ggcgagattc gtactcgaca tttgggcaag
     1681 aagagtgtgc tggcgggcgt caagaagctg atcggtaaag ttccggctga agagcgttca
     1741 ggatttggac aactagtcca gtctgccgag actgaggttg tcagcaagct caatct
//
LOCUS       DATCGC010000212         1602 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_236623, whole genome shotgun sequence.
ACCESSION   DATCGC010000212 DATCGC010000000
VERSION     DATCGC010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1602
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236623"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(113..1033)
                     /gene="xerC"
                     /locus_tag="VIJ87_02100"
     CDS             complement(113..1033)
                     /gene="xerC"
                     /locus_tag="VIJ87_02100"
                     /inference="COORDINATES: protein motif:HMM:NF001399.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009009 - site-specific recombinase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HEY5443270.1"
                     /translation="MEQLIEQFLEHLRYERNVSAHTLRNYASDLEQFLNHLSPADPKS
                     GKRKLPEVKDVDHLTIREWLAVLHSDQKKKSSIARKLAALRTFFQFLVREGLLESNPA
                     KLVSTPRQEKKLPKHLSIEEAIRFIETPDQNTDLGKRDRAMLELMYATGIRVAELTTL
                     NLADIDFRNQLIRVTGKRRKQRIVPFGDPAREAIKSYLEVRDNFLFNSPVSKRDDEAV
                     FLNYQGTRITTRSVGRMVEKYIKICAGMHAISPHALRHSFATHLLDSGADLRDIQELL
                     GHARLSTTQVYTHVSMEKLVEVYDKAHPKA"
     gene            complement(1202..>1602)
                     /locus_tag="VIJ87_02105"
     CDS             complement(1202..>1602)
                     /locus_tag="VIJ87_02105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443271.1"
                     /translation="VSDGIETTSRNSEFELVVQHALADDCQIYVVQTGLYEGANLRAL
                     AAERRMEQLTEQTGGAVYLPKSIPDLDLAFDQIAADLSQQYVLSYYPVPEHRDGRMHM
                     IDLKIKARNDVRLRSRKGYYVPKPAASADW"
BASE COUNT          401 a          394 c          393 g          414 t
ORIGIN      
        1 ttcccaccgc gcgctacgac gcgcaatgcc aagcgctaat tgaaagcgct aacggcgatg
       61 atgaactccc gaccttgtaa caatcatttt ccagatctca tttggaaaat gttcaggctt
      121 ttgggtgtgc cttgtcgtaa acctcaacta acttttccat cgacacgtga gtgtagacct
      181 gagtcgtaga gagcctggcg tggcccaaca gctcttgaat gtcgcgcagg tcggcgccgc
      241 tgtcgagcaa atgggtggca aacgaatgtc taagagcatg aggactgatg gcatgcatgc
      301 ctgcgcaaat ctttatgtac ttttcgacca tgcggccgac cgaacgagta gtgattcgcg
      361 ttccctggta attcagaaag actgcctcgt catcgcgctt tgaaactggt gaattgaaga
      421 ggaaattatc acgaacttca aggtaactct tgatcgcctc tcgagccgga tcgccgaaag
      481 gaacgatccg ctgtttacga cgtttaccag ttactctaat taactggtta cgaaagtcga
      541 tatcggccaa attcagcgta gtcaactctg ctacacgaat accggtcgca tacatcaact
      601 ccaacatggc gcgatctcgt ttacccaaat ccgtattctg atccggtgtt tcaataaatc
      661 gaatcgcttc ctcgattgat agatgctttg ggagtttctt ttcctgacgt ggagtggaaa
      721 caagcttcgc aggattactt tcaagcaatc cttcgcgcac caaaaattga aagaacgttc
      781 tcaacgccgc caatttgcgc gctatcgacg atttcttctt ctgatcggag tgaagcacag
      841 caagccattc ccgaatggtg aggtggtcga catccttaac ctcgggcagc ttcctttttc
      901 cagacttcgg atcagcaggc gagagatggt tgagaaactg ttcgagatca ctggcgtagt
      961 tgcgtaacgt gtgcgcgctg acgttacgtt cgtaacgcaa gtgttcgagg aattgctcga
     1021 tcagttgctc cataaaagtt gatgttcgat atgctttagc ttgtagcctt ggttagataa
     1081 gtagctgcag atcagataag agtaatcgct cattcaggtc tcttagtcat atccaattga
     1141 cctatatgaa tctgcagtga aagttactga cgagaacgac aagctaaagc atatcggaca
     1201 attaccagtc ggcgctggcc gccggtttcg gaacataata gccctttcgt gagcgcagtc
     1261 gaacatcatt tcgagctttg attttcagat cgatcatatg cattcgaccg tcacgatgct
     1321 cagggaccgg gtagtagctc aggacgtatt gctgcgacag gtcggcggct atttgatcaa
     1381 aggcgagatc tagatcagga atacttttcg gtagatagac cgcgccgcca gtctgttcgg
     1441 tgagttgctc catccgtcgc tcagcagcca gggcgcgcaa gttggcaccc tcgtagagtc
     1501 cagtctgtac cacgtagatc tggcaatcat cagccagggc atgttgcacg accaattcga
     1561 attcactatt gcgacttgta gtctcaatac cgtcagaaac ga
//
LOCUS       DATCGC010000213         1511 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_269320, whole genome shotgun sequence.
ACCESSION   DATCGC010000213 DATCGC010000000
VERSION     DATCGC010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269320"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            350..>1511
                     /locus_tag="VIJ87_02110"
     CDS             350..>1511
                     /locus_tag="VIJ87_02110"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEY5443272.1"
                     /translation="MEPTSIAKLPLPPGPKGHPILGVMREFNNDSLGFITRCRKFGDV
                     VRSRFLYVHAYFLYNADDIEALLTTKAKSFRKAGSLRSPFFARLVGNGLVTSEGDFWR
                     RQRRLAQPAFHRQRISTYGEVMVDYAQRAIDKWRPGEEIDISKDMTRLTLEIVVKTLF
                     NADVSNDADHVGAMLSEVVKPFASQATLKWILDNRLPTPGHRRYFKAVSEIDRIVFRI
                     ISDRRASKSDEGDLLSMLLQAQDDDGSQMNDAQLRDEVMTLFLAGHETTALALSWSWY
                     LLATHPEAEAKFHAEIDEVLQGRVPTVDDLRKLTYTEMIAKEAMRLYPPAYAVGREAL
                     EDTEIGGFRVPKGSQVFAFQWVTHRDERYFERPDKFEPERWTPERSERLPKYA"
BASE COUNT          383 a          363 c          393 g          372 t
ORIGIN      
        1 cgcgaaatgg gttacgttta cgcgattatt ggcgcagctg ggccagtgcg tttctaccaa
       61 gagacagtcg gcgcgatcgt gattccggat agcgaaccgg ggatttatat ggatttgctg
      121 agacgtgact agctttgcgc aaaactcggg aatccccacg cacagcattg aatgtgatta
      181 ctggtttttg ttcgtgatag ttcgtgtaat ttcgtggatc ggacttatta cgtaccacca
      241 aagaacgatc cacgcgcatt acacgaacta acactaacca agccccatgg aacactcgag
      301 tttttgacag agtctaggta gttggtggat tgttcaacgc acgatgtcta tggagccaac
      361 ctcaatcgca aagcttcctc tgcctccggg accaaagggt catcccattc tcggagtaat
      421 gcgtgagttc aataacgatt ctcttggctt cataactcgc tgtcgtaaat tcggcgacgt
      481 cgtccgttca aggtttctct atgtccacgc ttactttctt tataacgccg atgacatcga
      541 ggcactctta accaccaagg caaagagctt tcgaaaagcc ggctcgctcc gttctccttt
      601 ctttgcccgg ctggttggaa atggattggt aacaagtgaa ggcgatttct ggcgccgaca
      661 aagacgactt gcgcagcctg catttcatcg acaaaggatc agtacctacg gcgaagtaat
      721 ggttgattac gctcaacggg caatcgacaa atggcgaccc ggtgaggaga tcgacatttc
      781 aaaagacatg acgcgattga cgctcgaaat cgtcgtcaag actctcttta atgccgacgt
      841 ttctaatgat gcggatcacg ttggagcaat gctctcggaa gttgtaaagc cgttcgcttc
      901 gcaagcaacg ttgaaatgga tccttgataa tcgcttgcca acgccaggcc atcgtcgcta
      961 cttcaaggct gtgtcggaga ttgatcgaat cgtgtttcgg ataatatctg accgccgcgc
     1021 aagcaagtct gatgaaggcg acctactgtc gatgttgcta caagcacaag acgacgatgg
     1081 tagtcagatg aatgacgcac aactccgcga cgaggtcatg actcttttcc ttgcgggcca
     1141 cgaaacaaca gcattggcgc tttcgtggag ttggtattta ctcgcaaccc atcctgaagc
     1201 ggaggcgaaa tttcatgctg agattgatga agtcttgcaa ggtcgagtgc ctacagtcga
     1261 tgacctgcga aagctgacct atacggagat gattgctaaa gaagcgatga gactttatcc
     1321 acctgcttac gcagttggac gagaagcact ggaggacacc gagattggcg ggtttcgagt
     1381 accgaaagga agccaggtgt ttgcgtttca atgggtgact caccgggatg agcgttactt
     1441 tgaaagaccg gataagtttg aaccggaacg ttggacaccc gaacggtctg agcgtctgcc
     1501 aaaatacgcc t
//
LOCUS       DATCGC010000214         1197 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_236675, whole genome shotgun sequence.
ACCESSION   DATCGC010000214 DATCGC010000000
VERSION     DATCGC010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1197)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1197)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1197
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236675"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..184)
                     /locus_tag="VIJ87_02115"
     CDS             complement(<1..184)
                     /locus_tag="VIJ87_02115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443273.1"
                     /translation="MQQPRILLADNNPEVLSRLAEILTPRYDLVGSVANGCDLVSETV
                     RTDPDVVVLDFALPLKD"
     gene            complement(205..>1197)
                     /locus_tag="VIJ87_02120"
     CDS             complement(205..>1197)
                     /locus_tag="VIJ87_02120"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5443274.1"
                     /translation="PDLVQVDENTWRLGTSSKYQISTEGRRNPQGIRLDFEAQPKAFN
                     LEDCAAGERMSDQQRHRILLVDNEPMLRETWTMVLGELGYEVATATDAFDALAQLRRT
                     VPDLIISDLNMPRMSGFEFLKIMCVRFPKIPLIGLSGVYDSNDHFPDRLMVDAIYPKG
                     RCQPTELGRIVTDLLRATPARENSTASQPVPAQMPVFRNGPGRRVSCIELTCTECLRH
                     FSVEFEQEIRTGEQEIVYCTSCAAPVHYTIRFSLAVMLQRVFEAKKAVREGAPLFARM
                     GSAKSRNVGIATRSLLRNFPLFVHMGKPSSTSTSKNDSSKGGRSAINSSQTVRM"
BASE COUNT          288 a          299 c          319 g          291 t
ORIGIN      
        1 catctttcag aggcagagcg aaatcgagaa caacaacatc gggatcggtt cgaactgttt
       61 ccgaaacaag atcacagcca ttcgcaaccg atcctactaa atcgtatcgc ggggtcagaa
      121 tctcagccag gcgggaaagc acttcgggat tattgtccgc gagcaagatc cggggttgct
      181 gcatttgtaa atctcccctg ttgatcacat tctgacggtc tgagaggagt taatggcact
      241 ccgcccgcct ttggaactgt cattcttgct agttgaagtt gacgagggtt tgcccatatg
      301 gacgaacaac ggaaagttgc gaagaagcga acgagtggca attccgacgt ttctagactt
      361 tgcacttccc attcgagcaa acaatggtgc accttcgcga acggctttct ttgcctcgaa
      421 tactctttgc agcattactg caagcgaaaa gcggatggtg taatgaacgg gagccgcgca
      481 agaggtgcaa tagacgattt cttgttctcc cgtccgaatc tcttgctcga actcaactga
      541 aaagtgtcgg aggcattccg tgcaggtgag ctcgatgcaa gatactcgcc ggccaggtcc
      601 gtttctgaag accggcattt gagccggaac cggctgactc gcagttgaat tctctcgagc
      661 gggtgttgcg cgaagcaaat cagtgactat tcgtccgagt tctgtgggct ggcatcgccc
      721 tttgggatag atggcatcga ccatcaagcg gtctggaaag tgatcattgg aatcgtacac
      781 accgctcagc ccgatcagag ggatcttggg aaatcggacg cacatgattt taagaaattc
      841 gaatcccgac attcgcggca tgttgagatc tgaaatgatg agatccggaa cagtgcgcct
      901 gagttgcgcg agcgcatcga atgcatcggt cgcagttgca acctcgtaac cgagttcgcc
      961 caggaccatg gtccaggttt cacgcaacat cggctcattg tcgacaagaa gaattctgtg
     1021 cctttgctgg tcgctcattc tttcacccgc ggcgcagtct tcgagattga atgcttttgg
     1081 ctgagcttca aaatcaagac gaatcccttg gggattgcgc cgaccttcag tgctgatttg
     1141 gtatttcgag gaagtgccaa gtcgccaggt attttcatcc acctgcacta aatcggg
//
LOCUS       DATCGC010000215         1454 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_102847, whole genome shotgun sequence.
ACCESSION   DATCGC010000215 DATCGC010000000
VERSION     DATCGC010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1454)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1454)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1454
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102847"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..639
                     /locus_tag="VIJ87_02125"
     CDS             <1..639
                     /locus_tag="VIJ87_02125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443275.1"
                     /translation="ALDWRHLTFGLLCTWIVGVGRYWDNPRVGLLQHLGVGSVIYVFV
                     LSLFLWLIVWPLRPKDWGYFRVLTFISLVSPPAILYAIPVEKWDLDAANSINSLFLLI
                     VALWRVALLVFFLRRSGELDPLSIIVATFLPLTMIVIGLSMLNLEQAVFNFMGGLRDR
                     TPNDSAFGIVMLLSLISFLLFIPLVIGYAVMVAVNTAHARQQRLLKELDDNH"
     gene            626..1309
                     /locus_tag="VIJ87_02130"
     CDS             626..1309
                     /locus_tag="VIJ87_02130"
                     /inference="COORDINATES: protein motif:HMM:NF014305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443276.1"
                     /translation="MTTTEDLTLSARINLYYDLRSSATTSAPLLIALHGYGASKRYMM
                     REAQLMAPDGFAIASLQGFHQHMREPKEKGGPLRFSFGWLTNFRPEESVAIHHKALLD
                     LIDKLVGDGIADPARIFLLGFSQSCALNYRFAFSHPDRLRGIIGICGGIPGDWETSES
                     YRETTADVFHLTGTRDEFYTPGRVSDYEQQLGTRARSVTFKNYDAAHEIVQEMRDDVK
                     QWLTERSNG"
BASE COUNT          304 a          383 c          360 g          407 t
ORIGIN      
        1 gccctggatt ggcgacatct taccttcggg ttgctgtgta cttggatagt tggcgtcgga
       61 cgttactggg ataaccctcg ggtaggtcta ctgcaacacc tgggtgttgg ctcagtaatc
      121 tacgtctttg ttctttcctt atttctatgg ctgattgtct ggccgcttcg tcctaaagac
      181 tggggttact ttcgcgtctt aactttcatc tcactagttt caccacctgc cattctttac
      241 gccatccccg tcgagaagtg ggaccttgac gccgcaaatt ctatcaactc gttgttcctg
      301 cttatcgtcg cgctttggag agttgcgctt ctagttttct tcctgcgtcg ttcaggtgaa
      361 ttggatcctc tatcaataat cgtcgcaacg ttcctaccgc ttaccatgat cgtcattggg
      421 ctgagcatgt tgaatctcga acaggccgtg ttcaatttca tgggtggttt acgcgatcga
      481 acacccaacg attcggcttt tggaatagtc atgcttctct cactcatttc tttcctgttg
      541 ttcatcccgc tcgttattgg ttacgcggtg atggtcgcag tcaacacggc acacgcccga
      601 caacaaagac tcttaaagga actagatgac aaccactgaa gatctaacac tatcagctcg
      661 cataaatctc tattacgact tgcgttcttc tgcgaccaca tcagctccat tgctaatcgc
      721 attgcacggc tacggcgcga gcaaacgcta catgatgcgt gaggctcagt tgatggctcc
      781 agatggtttc gccatcgctt cattgcaagg gtttcatcaa cacatgcggg aaccgaagga
      841 gaaaggtggc ccgctgaggt ttagctttgg ctggctgaca aactttcggc ccgaggagtc
      901 agtcgcgatt catcacaaag cattgctgga tctaatcgac aaacttgtcg gcgatggaat
      961 cgcagatccc gcgcgcatct ttctgcttgg gttctcgcaa tcgtgcgccc tcaattaccg
     1021 atttgctttt agtcatcctg atcggctacg cgggatcatc ggaatctgtg gcggcattcc
     1081 tggcgattgg gaaactagcg agagttaccg agagacgacg gctgatgtct ttcacctaac
     1141 gggcactcgg gatgagtttt atacgccggg ccgcgtttcg gattacgagc aacaattagg
     1201 aacgcgagca cgttcagtga cgtttaagaa ctatgacgcc gcgcacgaga ttgttcagga
     1261 gatgcgcgac gacgttaagc agtggttgac tgaacgctcc aatggttaag actcgccaac
     1321 ttggacttac cttagccatc tgtcttgtgt gccttgttgc ggggtgtcgt tcgaaatcgc
     1381 ataccggaag ttcccggggc gccgtccccg cgcatccagt tttcaaacct ttacctccga
     1441 attcgtcctc aaag
//
LOCUS       DATCGC010000216         1103 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_136112, whole genome shotgun sequence.
ACCESSION   DATCGC010000216 DATCGC010000000
VERSION     DATCGC010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1103)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1103)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1103
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136112"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..185
                     /locus_tag="VIJ87_02135"
     CDS             <1..185
                     /locus_tag="VIJ87_02135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443277.1"
                     /translation="VVSRKGKPRKSRFASAPFLAPCLIHRQPHRSTGMYIFQPFFDFL
                     AEHRAISQEGILDVLL"
     gene            complement(199..393)
                     /locus_tag="VIJ87_02140"
     CDS             complement(199..393)
                     /locus_tag="VIJ87_02140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443278.1"
                     /translation="MERLIPEIEQLFRAKERRRARLAAMPFPEKVRAVVQMQKMVAPL
                     LRGRGLQVRIWEMKSIDDTH"
     gene            complement(381..878)
                     /locus_tag="VIJ87_02145"
     CDS             complement(381..878)
                     /locus_tag="VIJ87_02145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443279.1"
                     /translation="MERTLQVLNELERDGVLSRYAIGGAMGATFYIEPLLTFDLDVIV
                     LLPETKGGLLTLTPLYEVLRAKGYAEEGECVVIEGVPVQFLPAYNALLEEALREALGM
                     PYQATSTRVLRVEHLVAICVQTGRAKDRERVRILREQATLDDEYLAAVLRRHQLEGRW
                     KEWSD"
BASE COUNT          232 a          321 c          287 g          263 t
ORIGIN      
        1 ctgtggtttc gcggaaagga aagcctcgta agtcacgctt tgcgagcgcg ccttttcttg
       61 cgccttgcct catacacaga cagccgcatc gttcgaccgg catgtacatc tttcagccct
      121 tctttgattt tcttgcggag caccgggcta taagccagga aggcatcctc gatgtcctcc
      181 tctgatacag gtacaacgtt agtgtgtgtc atcgatcgac ttcatctccc atatccgcac
      241 ctgcagacct ctgccgcgca acagtggagc taccattttc tgcatctgga cgaccgcccg
      301 taccttctca ggaaatggca tggctgccag ccgggcccgg cgccgttcct tcgcgcgaaa
      361 gagttgttca atctcaggga tcaatcgctc cattctttcc atcgcccttc cagttgatgc
      421 cggcgaagaa ccgcggcgag atactcatca tccagggtgg cctgctctcg tagaatccgc
      481 actcgctcac gatccttggc tcgaccggtt tggacacaaa ttgccaccaa gtgttcgacc
      541 cgaagaacac gcgtagaggt tgcctggtag ggcatcccaa gcgcttctcg caaagcctct
      601 tccaagagcg cgttatatgc tggcaggaac tgcaccggca ccccttcgat caccacgcat
      661 tcaccctctt ctgcgtaccc cttggcgcgc agcacctcgt agagcggggt cagtgtcaat
      721 agtccacctt ttgtctccgg cagcagcacg atgacgtcca gatcgaacgt cagaaggggt
      781 tcgatgtaaa aggtcgctcc catcgcaccg ccgatggcat agcgactcaa aacgccatct
      841 cgctctagtt cgttcaggac ttggagtgtt cgctccatag gctcagacga cgcgatctta
      901 ccttgtttca gcgctgaaag aaacggtgcc gatatattca gttgagtaag cagagtttga
      961 gtaggcgcgg ggcctcttga tcgagaagga ttttcacgca gtcttgtgta gtttgagaag
     1021 ggtgctcttg gagaattcca gcacttgaac cgcttgctcg cgcgtgacgg taggaaagtt
     1081 gttgagaaat tcatcgaggg aga
//
LOCUS       DATCGC010000217         1250 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_102871, whole genome shotgun sequence.
ACCESSION   DATCGC010000217 DATCGC010000000
VERSION     DATCGC010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1250
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102871"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..396)
                     /locus_tag="VIJ87_02150"
     CDS             complement(<1..396)
                     /locus_tag="VIJ87_02150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443280.1"
                     /translation="MEPSRFDALRAELLYQTGQHALASRLSRQLLRESLPVRLTARVA
                     YIAAMVDFETGHFESSLEHIRQAVSTADRSGDAIVLATTQLGLLRLVADADTAIVPLL
                     RDVRRTIASTGDPHLMIALRLHFARVEASR"
     gene            complement(503..>1250)
                     /locus_tag="VIJ87_02155"
     CDS             complement(503..>1250)
                     /locus_tag="VIJ87_02155"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEY5443281.1"
                     /translation="IPLGQRLTGWVGAHKQSIRNSDPVLDLGDVARSVTPRLRSCLSA
                     PLVIGQSLVGVLSLYSHGQQAFSEDHQRIVEVIARQISPSLQGITQRRKARGLEAVAL
                     AVKEREAPYIDDCNFGVCVIVVTIAAQESDQSPSVDNTENAISKCLRHHLRATDICFR
                     YKRDQYVIIHRPIESGDGELLVRRLRIAIEELSLELRPERRLRGHVTLANMPDVSDSL
                     DELVLAAKRDADQEVARKTNHVGKSPESIH"
BASE COUNT          282 a          352 c          336 g          280 t
ORIGIN      
        1 ccgagacgcc tcgacgcgcg caaaatgaag gcggagtgca atcatcaagt gtggatcgcc
       61 ggtgctcgcg atagtgcgac ggacatcacg caacaaagga acgattgccg tatccgcatc
      121 cgccacaagg cgcagaagac ccagttgggt tgtcgccaga actattgcgt cgccacttcg
      181 atccgccgtc gaaaccgctt gccggatgtg ctcgaggcta ctttcaaagt gtcccgtttc
      241 gaagtccacc atggccgcaa tgtacgcaac ccttgccgtc aagcggacgg gcaacgactc
      301 tcgcaatagt tgtctgctga ggcgagaggc gagtgcgtgc tgaccggttt ggtatagcaa
      361 ctcggctcgt agtgcgtcga aacgggaagg ctccaatggc cgaatcgtcc tcgtcccgtc
      421 atcaagaagt gacaatgctc tactaaaatg cccggcccgg acctcagact cgacaagcgg
      481 taaggcggac tgcaagggca cctcagtgaa tggattccgg cgacttacca acatggttgg
      541 ttttacgggc gacctcttgg tcagcgtccc gtttggcagc tagtactaac tcgtcgagtg
      601 aatcgctgac atctggcatg ttggccaatg tgacgtggcc cctcaatctt ctttcaggcc
      661 tcaactcgag agacagctcc tctattgcta ttctgagacg ccgcaccagc agttcgccgt
      721 cgccagactc gatgggccga tgaatgatca cgtactgatc gcgcttgtag cggaaacaga
      781 tatctgtagc tcgaagatga tgtctaagac acttacttat tgcgttctcc gtattatcca
      841 ccgatggcga ttggtcactc tcctgtgcag cgattgtgac aactatcaca catacaccga
      901 agttgcagtc gtcaatataa ggcgcttctc gttccttgac cgctaacgcc acagcctcca
      961 agcctcgggc tttgcggcgc tgagttattc cctgcagtga cggagaaatc tgtctagcaa
     1021 ttacttctac gatccgctga tgatcttcgc tgaatgcctg ctgaccatgt gaatacaggg
     1081 acaagacccc gacgagcgac tgaccaatca cgagaggcgc gctgaggcaa cttcggagtc
     1141 ttggtgttac ggaccgcgcg acatctccca gatcaagtac tggatcggag ttacggatgc
     1201 tttgtttgtg tgcaccgacc cagccagtta ggcgttgtcc cagaggaatt
//
LOCUS       DATCGC010000218         2143 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_102883, whole genome shotgun sequence.
ACCESSION   DATCGC010000218 DATCGC010000000
VERSION     DATCGC010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2143
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102883"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..769
                     /locus_tag="VIJ87_02160"
     CDS             <1..769
                     /locus_tag="VIJ87_02160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443282.1"
                     /translation="ANMFQTIERQGGGGGGFLSDHPSPKDRYARINQEAQFLRVTNPV
                     RDTREFARVQERLRGYPRAQSMSEIARSGQRNPTEGSSGGDYPNNAPSGRVEYPSTRY
                     QNYQILNGNVQVSVPNNWQQVGDSNSVWFAPNGAYGQYNGQAVFTHGVNFGVTQANDR
                     NLQRATDEFVSSLTQNGGNLRVTGNYQQTRLSGRTAIWTSLINTNEATGRPENIRLIT
                     TQLGNNQLFYMIAVAPQNDRNFETAFQAVSNSVRINY"
     gene            complement(851..1669)
                     /gene="mazG"
                     /locus_tag="VIJ87_02165"
     CDS             complement(851..1669)
                     /gene="mazG"
                     /locus_tag="VIJ87_02165"
                     /EC_number="3.6.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF007113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase"
                     /protein_id="HEY5443283.1"
                     /translation="MSATFNDLVALMARLRSPTGCPWDREQTYATLAPMMLEEAYEAF
                     EAVEEAQAGRPSELRDELGDLLFQIVFYAQVATERGEFTIDDVAEAIHTKMVRRHPHV
                     FGEVKADDSATVLLNWEAMKAEERRAAGKSDNAKTSLLDGVSSKAPALMEAHQLSTKA
                     ARVGFDWRNVDEIFDKLQEEIEELRVAIHTHREAEDEATHTRVREELGDLLFAATNIA
                     RHMQVEPESALKLTNRKFRKRFNYIEEKLRERNQPFDQTSIDDLESLWQEAKTK"
     gene            complement(1799..>2143)
                     /locus_tag="VIJ87_02170"
     CDS             complement(1799..>2143)
                     /locus_tag="VIJ87_02170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443284.1"
                     /translation="NGGAPSEGGGYPDQGQGRSGRITWKGRVDDNVRIVFRGGRADLE
                     TVGGTPYYDSQPNFLNPLPNRRVTVTLNVKKGRGQVFIEEQPSRENEYAVVIRIRDTK
                     SGADSYEFELSW"
BASE COUNT          484 a          566 c          541 g          552 t
ORIGIN      
        1 ggccaacatg tttcagacga ttgagcggca aggtggcggt ggcggtgggt ttttgagcga
       61 tcacccgagt ccaaaggatc gctacgcacg tatcaaccag gaagctcaat ttcttcgcgt
      121 tacaaatccg gtgcgcgaca cacgtgagtt cgctcgagtt caggaacgac tacgcggtta
      181 tccacgcgcc caatcgatgt cggaaatcgc gcgtagtggt caacgtaatc cgacggaagg
      241 atcatccggc ggagactatc caaacaatgc accgagtgga cgagttgagt atccatcaac
      301 ccgttatcag aattaccaaa tcctcaatgg caacgttcag gtgagcgtgc cgaataattg
      361 gcagcaggtt ggtgattcga attcagtgtg gtttgcccca aacggcgcct acggtcaata
      421 caatgggcag gcagtattca cgcacggagt gaactttggc gtcacccaag ctaacgatcg
      481 caacctgcaa cgagctaccg atgagtttgt cagtagtctc acccagaacg gcggtaacct
      541 tcgtgtgacg ggcaactatc aacagacaag actcagcgga agaactgcca tctggacttc
      601 attgattaat accaatgagg ctaccggtcg gccggagaac attcgactga tcacgacgca
      661 gcttggcaac aatcagctgt tttatatgat tgccgttgct ccgcagaatg accgcaactt
      721 tgagactgcg tttcaggctg tttcgaattc agtgaggatc aattactgaa aaatggtctt
      781 gggtctttag cctcaggtct tggtaacgct cccgggggtt tctggaaagg ctaaagacca
      841 aagccaattt ctatttagtt ttagcttcct gccacaatga ctcaagatca tcgattgatg
      901 tttgatcgaa tggttgattg cgttcgcgca acttttcttc gatgtagtta aatcgctttc
      961 ggaattttct gttcgtcaac ttcaacgctg attctggttc gacctgcata tgcctggcga
     1021 tgtttgttgc cgcaaacaat agatcgccca gctcttctcg tacgcgtgtg tgagtagctt
     1081 cgtcctcggc ttcccggtga gtgtgaatag caacgcgtag ttcctcgatc tcctcttgta
     1141 gcttatcgaa tatctcgtcg acgtttcgcc agtcgaaacc gacgcgagca gcttttgtgg
     1201 aaagttgatg cgcttccatt aaggcaggtg ctttcgagga aactccgtcg agtaacgagg
     1261 tcttagcgtt gtcgcttttt ccggcggcac gtcgctcctc agctttcatt gcttcccagt
     1321 tgagtagcac cgttgctgaa tcatccgcct tcacttcgcc aaacacatgc ggatgacgtc
     1381 gaaccatctt ggtgtggatt gcctcagcaa cgtcatcgat agtgaattcg ccacgttccg
     1441 tcgctacctg ggcgtagaag acgatctgaa acagtagatc accaagttca tctcgcaatt
     1501 cagatggacg acccgcttgc gcttcctcga ctgcttcaaa agcctcgtag gcctcctcaa
     1561 gcatcatcgg agcgagcgtg gcgtacgttt gttcacgatc ccatgggcaa cccgttggtg
     1621 accgaaggcg ggccattagc gcgactagat cgttgaatgt agcggacata ggtgaattac
     1681 ttccgatttc cgattgccaa ttgccgaatg gtttcgagct agaggcttgg tttcacctta
     1741 ggagacaatt ccgcgtcggt caaatcggaa atcgcaatgg gcacctggca atactccttt
     1801 accagctcag ctcaaactcg taactatccg ccccgctctt cgtgtctctg atgcggatga
     1861 cgactgcata ctcgttttca cgtgaaggtt gttcctcgat gaaaacctga ccgcgacctt
     1921 tttttacgtt caacgtcaca gtgacacgtc ggtttggaag cggattgagg aagttcggct
     1981 gactgtcgta gtagggagtg ccgccaacgg tctcaagatc agctctgcca ccacgaaata
     2041 ctatccgaac gttgtcgtcc actcgtcctt tccaggtgat tcttccgctc cgtccttgtc
     2101 cctggtcggg atatccacca ccttcgctcg gcgccccgcc gtt
//
LOCUS       DATCGC010000219         1118 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_102933, whole genome shotgun sequence.
ACCESSION   DATCGC010000219 DATCGC010000000
VERSION     DATCGC010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1118
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102933"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            356..622
                     /gene="rpsT"
                     /locus_tag="VIJ87_02175"
     CDS             356..622
                     /gene="rpsT"
                     /locus_tag="VIJ87_02175"
                     /inference="COORDINATES: protein motif:HMM:TIGR00029.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HEY5443285.1"
                     /translation="MPNHKSAEKRVRQSEKRRDINRGHRTKVRTYIKKLRSALDAGDK
                     QQLDQILPETISVIDKSIQKGVMHANAAARYKSRLTAQANQVGK"
     gene            823..>1118
                     /locus_tag="VIJ87_02180"
     CDS             823..>1118
                     /locus_tag="VIJ87_02180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443286.1"
                     /translation="MPVEQKDRRPMAVYQNEAQIADVVQGFESCTTDKGAFKHQDHLT
                     VAVWYLQDSNIQEATARLRTALLHFVDHHQVDRAKYNETITVLWLELVAGQLEKL"
BASE COUNT          291 a          254 c          300 g          273 t
ORIGIN      
        1 tctcctttag acaggtgagc aaccggggct ttgagttatt aggaaatcga agcggagatg
       61 tttgcataga ttgcgaaatt gacgctacta cagtggtcgc ttgagtgtca ataattgagt
      121 aggttttgat gtgttgcctg aatgtagccg ccgttcattc ttctcggcaa ttaacagaga
      181 gaccaagatt ggacagacca aaactcggaa cttagcggtt gccgtagggt tgggtcgcct
      241 tgacactcca gttttcggca cctatactcc gtcacttgcg ttaaggctcg aatcgctttc
      301 tgagcctctc aaagcgaaat tgttactgag tttttgaagt ttttggagag agttaatgcc
      361 taatcacaag tcagctgaga agcgcgtccg acagagcgag aagcgtcgtg atatcaatcg
      421 tggtcatcgt acaaaggtcc gcacgtacat caagaagctc cgcagtgccc tggatgccgg
      481 cgacaagcag caactcgatc agatattgcc agagactatt tctgttatcg ataagtcgat
      541 tcagaagggt gtgatgcacg caaatgctgc tgcacgctat aagtcgcgat tgacggcaca
      601 ggcgaatcaa gtcggcaagt aagacaaaaa gcaaatttca acaattgcga ggtgggtcga
      661 ttgcgatcca cctcgttttt tgtgtgctgc ggtgaagata gccggtagcc cgggtagatc
      721 tctctgtccc ctgcgtctcc gcgccctctg cgtttggata ggcgccgacc atcagtttaa
      781 cgcagaggtc acagagacgc agagaacacg gagaaataga atatgccagt agagcaaaaa
      841 gacaggaggc ccatggccgt ttaccaaaat gaagcgcaga ttgctgatgt cgttcagggc
      901 tttgaatcct gtacgaccga caagggtgca ttcaagcatc aggatcatct aaccgttgct
      961 gtttggtatt tgcaggactc caacatccag gaagcaactg cgaggttacg aacagcgttg
     1021 ctgcactttg tcgatcatca tcaggttgac cgggcaaagt acaacgagac cattactgtg
     1081 ttgtggcttg aactcgttgc gggccagctc gagaaact
//
LOCUS       DATCGC010000220         1089 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_4125, whole genome shotgun sequence.
ACCESSION   DATCGC010000220 DATCGC010000000
VERSION     DATCGC010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1089)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1089)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1089
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4125"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..250
                     /locus_tag="VIJ87_02185"
     CDS             <1..250
                     /locus_tag="VIJ87_02185"
                     /inference="COORDINATES: protein motif:HMM:NF014647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="BMP family ABC transporter substrate-binding
                     protein"
                     /protein_id="HEY5443287.1"
                     /translation="PGFVLTSMVKRVDNAVYNIVQEVFNHRFSPGLHVFGLDKDGVGY
                     AMDDNNKSLVSPESIQLAEEAKKKIIAGQIKVTDAMFQ"
     gene            327..743
                     /locus_tag="VIJ87_02190"
     CDS             327..743
                     /locus_tag="VIJ87_02190"
                     /inference="COORDINATES: protein motif:HMM:TIGR02436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four helix bundle protein"
                     /protein_id="HEY5443288.1"
                     /translation="MAQTNFEKLRVYQLAEQLADLIWQIVNKWEYFPKITVGKQMVTA
                     ADGVGSNIAEGSGRGSYLDNRRFVKIARGSLYETKNWLRRSFRRQLISDEDVKKLKPI
                     MDQLLPSLNAYYRSIDKAVQNERTKYQAQSTKHKKQ"
     gene            753..>1089
                     /locus_tag="VIJ87_02195"
     CDS             753..>1089
                     /locus_tag="VIJ87_02195"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY5443289.1"
                     /translation="MLELRNISKRFGAVQANDNVSIVVKPGTIHAIVGENGAGKSTAM
                     RIAYGFYTPDSGEIYVDGQVHEIKSPHDAIAVGIGMVHQHFMLVEPMTVAENIVLGSE
                     PGSAFALDLK"
BASE COUNT          288 a          250 c          285 g          266 t
ORIGIN      
        1 accaggcttc gtcctcacga gcatggtgaa gcgtgttgat aacgctgtct acaacatcgt
       61 ccaggaagtg ttcaatcatc gcttctctcc cggactgcac gtctttggtt tggacaagga
      121 cggcgttggt tatgcgatgg atgacaataa caagagcctc gtttctccag aatcgatcca
      181 actcgcggag gaagcgaaga agaagattat tgcagggcag attaaggtga cggatgcgat
      241 gttccaataa aacgtggaac ttagtacttt gtgcttagta cttggttcct aattttttgt
      301 ttccttctac tcacgaggaa cctcacatgg cacagactaa ttttgaaaag cttcgcgttt
      361 atcagcttgc tgaacagctg gcagatttga tttggcagat cgtgaataag tgggagtact
      421 tccccaaaat tacagttggc aagcagatgg ttactgcagc tgacggagtt ggctccaaca
      481 ttgctgaagg tagtggtagg ggaagctacc tagacaatcg tcgtttcgtg aagatcgctc
      541 gtggctctct gtatgagacg aagaactggt tgcgtcgatc atttagacga caacttatat
      601 ccgatgagga cgtcaaaaag ctcaagccaa ttatggatca actcttaccg agcctgaacg
      661 cctactatcg ctcgattgac aaagccgttc agaacgagcg aacaaagtac caagcacaaa
      721 gtaccaagca caaaaaacag taacccgact tcatgctcga actccgcaac atctccaaac
      781 gcttcggcgc tgtccaggca aacgacaacg tgagtattgt cgtaaagcct gggacgattc
      841 atgcgattgt tggggagaac ggcgcgggga agtcgacggc gatgcgcatc gcttacgggt
      901 tttatacgcc tgacagtggt gagatttatg tcgatggtca ggtgcacgag atcaagtcgc
      961 ctcacgacgc aatagcggtt ggcatcggaa tggttcatca gcacttcatg ctcgttgagc
     1021 caatgacggt tgcggaaaac attgtcctcg gatctgagcc gggtagtgcg ttcgcgctcg
     1081 atctcaaag
//
LOCUS       DATCGC010000221         2375 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_269522, whole genome shotgun sequence.
ACCESSION   DATCGC010000221 DATCGC010000000
VERSION     DATCGC010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2375)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2375)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2375
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269522"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1507)
                     /locus_tag="VIJ87_02200"
     CDS             complement(<1..1507)
                     /locus_tag="VIJ87_02200"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY5443290.1"
                     /translation="MKATKLSLLLFLLTFLVTPTLAQTTGSISGEVKDEKQAVITSAT
                     VTVRNVKTNETRTTQTDSDGRYRLSGISVGDYEVSVEATGFAKYVQSGITLVLNQPAT
                     IDVTMKAGGVSEVVNIVENASILNTTNAEVGTRFDERRLAELPLATNRNVYNVALSAP
                     GVSQLGPNQVGFAAGINYSANGGRVRSNNFMIDGQDNNDFGVAGAAIPLNNPDVIQEV
                     RLVTNQMTAEFGRNSSSVFNAITKRGGNGFHGSGFWFHNDNALNACSNLDKNAGFCNA
                     SATDPGKTHAPFRIENQAGGTIGGPVLKNKLFFFGSVQRWWDRQLGAGVTIVGVPTEA
                     GRQIIQAQAGSRPQVAALLSFLPAAQTPTGQNVTFNIGANQFVVPVGSLTGTTNFNFN
                     DWQSSMRLDGNLSDKHQIYGRYIFQDSDTIGTGQASPPGNTQNQIARTQGFNLTMASV
                     FSPTWVNEARFAYLRNASSTTSNNPASETIPSIEVNQLGLTGFNAAASRTAI"
     gene            1796..>2375
                     /locus_tag="VIJ87_02205"
     CDS             1796..>2375
                     /locus_tag="VIJ87_02205"
                     /inference="COORDINATES: protein motif:HMM:NF012607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY5443291.1"
                     /translation="MQNLLKTESIVFLERHTFNVPFRRPQFDHEWVEYGETEVVGLVP
                     RLANATIAICNKVAMRGESLSQLPHLKLIAVAATGVDNVDLEFCRSKGINVCNTRGYA
                     VDSLPEHALMLMLALRRNLVGYRDDVRGGQWHEASQFCLLGRPIADLKAATIGIIGYG
                     TLGQSMARLARAIGMDVLIAERKGAIVAREGRT"
BASE COUNT          544 a          565 c          652 g          614 t
ORIGIN      
        1 cgattgccgt tcgacttgcc gcggcattaa agcctgtgag gccaagttga ttgacttcaa
       61 ttgatgggat tgtttcagaa gcgggattgt tcgaggttgt agaagaagca tttcgcaggt
      121 atgcgaagcg cgcttcattg acccaggttg ggctaaatac gctcgccatc gtcaggttga
      181 agccctgggt tcgcgcaatt tggttctggg tatttcccgg ggggctggct tgtcccgtcc
      241 cgatagtgtc ggaatcctga aagatgtaac gcccatagat ctggtgctta tcgctcagat
      301 tgccatcgag acgcatggaa gattgccaat cgttgaagtt gaagtttgtt gtgcccgtga
      361 gtgaaccgac gggaactaca aattgattgg ccccgatatt gaaggttacg ttctgaccgg
      421 tcggtgtttg cgcagcggga agaaaactca ggagcgctgc cacctgcgga cgactgccgg
      481 cttgtgcctg gataatttgt cgacctgctt cagttggaac tcccacgatg gtaacgccgg
      541 cgccaagttg acgatcccac caccgctgca cggagccgaa gaagaaaagc ttgttcttca
      601 gaacgggccc accaatcgtg ccgcctgcct ggttttcaat ccgaaaagga gcatgagtct
      661 ttccgggatc tgtggctgag gcgttacaga aaccagcgtt cttatcgaga ttgctacaag
      721 cgttcaacgc gttgtcgtta tggaaccaga agccggatcc gtgaaatccg ttgccgcctc
      781 gcttggtaat cgcgttgaaa actgaactcg agtttcgtcc aaactccgcg gtcatttggt
      841 tagtcactag ccgtacttcc tgaataacgt caggattatt gagcggaatc gcagcacccg
      901 cgactccaaa atcattattg tcctgaccat caatcatgaa gttatttgaa cggacgcgcc
      961 caccatttgc ggaatagtta attccggcgg caaacccgac ctggtttggt ccgagttgac
     1021 tgactcccgg tgctgacaag gcaacgttgt aaacatttcg atttgttgca agcggaagtt
     1081 ccgcgagacg tcgttcgtca aaacgcgtcc caacttcggc gtttgttgta tttagaattg
     1141 aggcattctc gacgatgttt accacttcgg agaccccgcc tgctttcatc gtaacgtcga
     1201 tggttgcggg ttggtttaaa acgagggtga tacccgactg cacgtattta gcaaagccag
     1261 ttgcttcgac actgacttcg taatcgccca ccgaaattcc acttagacga taacgcccgt
     1321 cactgtctgt ttgagtggtt cgcgtttcat ttgttttcac gtttctcacg gtgaccgtgg
     1381 cactagtgat gacggcttgc ttctcgtctt tcacttcgcc ggagatggag ccggtcgttt
     1441 gagctaacgt tggtgtaacc aaaaacgtga gtaggaaaag caaaagcgag agcttggttg
     1501 ccttcataag ttgtctcctc tgtgctcgcg gcccgtgaga gggcgcatca atagggtcgg
     1561 gattgtggtt aatccacggg tttgtcgggg gatgacttaa gagttgaaca agcaaccaac
     1621 attccaactc tacgggtggg cggtcactaa aatctaagta actaggtaat cagggattat
     1681 cggaaatggt tccacctcga tggatcgaat tccacaattg tgaacgagct gcttgttcaa
     1741 atctttgaat tcatccatcc tcttggaaac tacagagccg tccctgtcca taaacatgca
     1801 gaacctacta aaaacggaat cgatagtttt ccttgagcgc cacaccttca acgtcccatt
     1861 tcgaaggccg caatttgatc atgaatgggt tgagtatggt gaaaccgagg tggttgggct
     1921 cgttcccaga ttggcaaatg caacgattgc gatctgcaac aaggtcgcga tgcgtgggga
     1981 aagtttgtct cagcttccac atctaaaact aatcgcggtt gctgccacag gcgtcgacaa
     2041 tgttgatctc gagttctgtc gaagcaaggg aatcaatgtt tgtaatactc gtggttacgc
     2101 agtcgattcg ttgccggagc acgcgttgat gttgatgttg gcgctgcggc gaaacttagt
     2161 tggctatcgc gacgacgtga ggggtggtca gtggcacgaa gcaagtcagt tctgcttgtt
     2221 gggtcgtcca attgctgact tgaaagcggc gacgatcggc atcattggtt atggaaccct
     2281 gggccagtca atggccagac ttgcgcgcgc tatcggaatg gatgtgctga tcgcggaacg
     2341 taaaggcgcg attgtcgctc gtgaaggtcg gacta
//
LOCUS       DATCGC010000222         1437 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_36799, whole genome shotgun sequence.
ACCESSION   DATCGC010000222 DATCGC010000000
VERSION     DATCGC010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1437)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1437)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1437
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36799"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..713
                     /locus_tag="VIJ87_02210"
     CDS             <1..713
                     /locus_tag="VIJ87_02210"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEY5443292.1"
                     /translation="GGNHKTLRDVQTNEPIRSAVRMTTNEEYRNLLRCSLIVTGSCVL
                     AVVICYFWVDRSVALFVYNHHINRIEVFRWLTYPPPEVQNWSALVVTFLVVRRAWGPF
                     LPWQRVLLVACISLIVADDFRISLGDVFGRYWPETWTHDNPSLIGTGTYGFHPFQRGD
                     DVGSFPSGHACRIFGFAGVWMIAMPGTRVIAMVLSIPMLLSLVAMNYHFVSDVIAGSV
                     LGALIATYAVHLARLKMA"
     gene            781..>1437
                     /locus_tag="VIJ87_02215"
     CDS             781..>1437
                     /locus_tag="VIJ87_02215"
                     /inference="COORDINATES: protein motif:HMM:NF012774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HEY5443293.1"
                     /translation="MFSRFGVIAVIVVAVLGASAVHVAARDGSKDWVVVENCRLITNP
                     ANDGDSFHVSAGPKEYLFRLYLVDAPETDARNPTRLIEQGKYFGITVPQAIEVGQAAK
                     EFIQEKLSQPFTVFTHMSDAMGQSRLERFYAFVETKEGDLGEQLVRNGLARSYGFKAA
                     PPGLTSSRIEVEKLQQFEDEAKRDKIGAWGVNTGRLNAHAQTQSAFSSFVADGKIQSR
                     S"
BASE COUNT          321 a          347 c          403 g          366 t
ORIGIN      
        1 atggaggaaa tcacaaaacg ctacgagacg ttcaaactaa tgagccaatt cgaagtgccg
       61 tcagaatgac gacgaacgag gagtatcgca atctcttgcg atgcagcttg atcgtaacgg
      121 gctcgtgcgt tctcgcagtg gtgatctgtt acttttgggt tgatcgcagc gtggccctct
      181 ttgtttacaa ccatcacatc aacaggatcg aagtctttcg ctggctcacg tacccgccgc
      241 cggaagtgca gaactggtca gccctggtgg tgacattctt ggttgttagg cgcgcgtggg
      301 gaccattttt gccgtggcag agggtattgc tcgtcgcctg tatcagcttg atcgttgccg
      361 acgatttccg catctcgtta ggcgatgttt tcggtcgtta ctggccggag acctggacgc
      421 atgacaatcc ctcgctgatc ggcacaggaa catatggatt tcatcccttt cagcgaggcg
      481 acgacgtcgg cagctttcca tcaggtcacg catgcagaat cttcggattc gcaggggtat
      541 ggatgattgc aatgcccggc actcgagtca tagcgatggt tctttctatt cctatgctcc
      601 tgagccttgt ggcgatgaac tatcactttg tgagtgacgt catcgccggc agcgtgttag
      661 gcgcgctaat cgccacatat gccgtgcatt tggcacggct aaaaatggct tgagcgaacg
      721 ttgttagctg ttcaagatca tgagccaatt caaggtgacc gtttgatctt tcggttttcg
      781 atgttctcgc gattcggtgt aatcgcggtc attgtcgttg ctgttcttgg ggcttcagct
      841 gtccatgttg ccgcccgcga cggatctaaa gattgggttg ttgtggagaa ttgccgtctc
      901 atcacaaacc cagccaacga cggcgacagc tttcatgtga gtgccggtcc gaaggaatac
      961 ctttttcggc tgtatttggt ggatgctcct gaaacggatg cgcggaatcc cacacgcctc
     1021 attgaacagg ggaaatactt cggaattact gtgccgcagg ccatcgaagt aggtcaggcg
     1081 gcgaaagagt ttatacaaga gaaactgtcc cagccgttca cagtcttcac gcatatgtcc
     1141 gatgcgatgg gtcagagcag attggaacgt ttttacgctt tcgttgagac caaagaaggt
     1201 gatttgggtg agcagctggt acgcaacggt ctagctcgat cttacggctt caaagcggct
     1261 ccgccgggac taacgagttc gcgaatcgaa gtagaaaagc ttcagcaatt cgaggacgaa
     1321 gcaaaacgag acaagatcgg agcttggggc gtcaacacgg ggcgattgaa tgcgcatgca
     1381 caaacgcaat cagctttcag ttcttttgtt gccgatggaa agattcagtc acgctcg
//
LOCUS       DATCGC010000223         1030 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_402645, whole genome shotgun sequence.
ACCESSION   DATCGC010000223 DATCGC010000000
VERSION     DATCGC010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1030
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_402645"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(126..>1030)
                     /locus_tag="VIJ87_02220"
     CDS             complement(126..>1030)
                     /locus_tag="VIJ87_02220"
                     /inference="COORDINATES: protein motif:HMM:NF012321.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY5443294.1"
                     /translation="EVSQPSGAKGRVRSTDKDVPSPPADKSSKSTPQWDDEFSNQPHS
                     RKPYSQSRRARGIKASTAQPRGRYSRAVETKNGPARIAIDATLRALASRSKASTDFVR
                     YKLLKHKEGTLFIFAIDTSGSMAANRIARAKASILKLLRQSYLNRDHVAVVSFHGTEA
                     SVALPPSRSILRARRVLDSLRMGGSTPLSAGLACTINLIHRFRDIHRETTVLLFTDGH
                     ANVALSKQGKQHRALRQSAIENEISRLSLALQQTRSSVVVVDVQREFESSQESRRLAE
                     ILRAKFVKLGVAPRSTSSLDVLTR"
BASE COUNT          226 a          275 c          263 g          266 t
ORIGIN      
        1 aatcagacgt tgctcgattt ccaacaactc ttcgtagagt tgcaacactc gagcgtcttg
       61 atttgctgac ttggcgtcgt caatcatggg ttcggatact tccagagaga gaaagagatt
      121 tggatttatc gcgttaagac atccaagctg gatgtgcttc gcggcgctac acctaactta
      181 acaaactttg cgcgcagtat ttccgccaac cgcctggact cctgactcga ctcaaattcg
      241 cgctggacat ctacaacaac cacgctcgat cgagtttgct gtaacgcgag acttagtcga
      301 ctaatttcgt tttcgatcgc ggactggcgc aaagctcggt gttgctttcc ttgtttgctg
      361 agtgccacgt tagcgtggcc atcggtaaaa agcagaaccg ttgtctcgcg atgaatgtcg
      421 cgaaatcgat gtatcaagtt gatcgtgcaa gccaacccag ctgacagtgg cgtgcttcca
      481 cccatcctta atgaatcaag cacacgtctc gcgcgcaaga tgctgcgcga tggtggcagc
      541 gccaccgagg cctcagtgcc gtgaaacgaa acgaccgcaa catgatctcg attgaggtat
      601 gactgtctca acagcttaag tatcgacgcc tttgcgcgag cgatgcggtt cgccgccata
      661 ctgccggaag tgtcaattgc aaatatgaat aacgtgccct ctttatgttt gagtagttta
      721 taacgaacaa aatctgtcga ggccttgctt ctacttgcca gggcccgaag cgttgcatca
      781 atggcaattc tggccggtcc attcttagtt tcgactgcgc gactataacg gcctcgcggc
      841 tgcgctgtgg aagcttttat gccccgagct cgcctgctct gcgagtaggg ttttcgcgaa
      901 tgaggctgat tactaaactc gtcgtcccac tgtggagttg atttgctgct cttatcagcg
      961 ggcggcgatg gcacatcctt gtctgtactt cgcactcggc ccttagcgcc agaaggctgg
     1021 ctcacttcgg
//
LOCUS       DATCGC010000224         1158 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_469143, whole genome shotgun sequence.
ACCESSION   DATCGC010000224 DATCGC010000000
VERSION     DATCGC010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1158)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1158)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1158
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_469143"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..268)
                     /locus_tag="VIJ87_02225"
     CDS             complement(<1..268)
                     /locus_tag="VIJ87_02225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443295.1"
                     /translation="MRFRISSIGASAVLVLTILAWSPTFTNGLVLAQTINKTSVQVRL
                     QVHKGFKGDPETWSWTPVINFRVNGPFSPGGALSVEYTLPGKTWK"
     gene            complement(293..658)
                     /locus_tag="VIJ87_02230"
     CDS             complement(293..658)
                     /locus_tag="VIJ87_02230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443296.1"
                     /translation="MALLEPSTVPGLDKSLFELLITLGSILITGAVVTVGSVIGLIRA
                     IRRRRRGDRSSAAVVLAAIATAIALVWLSYWVRYDLHEKSNPINALFGINAALCLLPL
                     SWFVAAICANRERPDELVS"
     gene            complement(711..>1158)
                     /locus_tag="VIJ87_02235"
     CDS             complement(711..>1158)
                     /locus_tag="VIJ87_02235"
                     /inference="COORDINATES: protein motif:HMM:NF024275.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443297.1"
                     /translation="KMKTQNSSISVFVTLALWLGLILGCSNLHKAMNEKRAEREGPGI
                     TISAEDLSNAYHANEADADKLYQGKLVIVRGTVGTVSIPAGGVGRPAIVLMDGNQKPI
                     VNCFGFAVDARDAIEKLKTGQKVTVKGKCMGKVATDEPSLEDCVLQ"
BASE COUNT          290 a          332 c          274 g          262 t
ORIGIN      
        1 acttccatgt tttcccgggc aaagtgtact cgacagatag cgcgccgccg ggactgaatg
       61 gaccattgac ccgaaaattg atcaccggcg tccaactcca agtctccggg tcacctttaa
      121 accctttatg aacttgcagc ctgacctgaa ccgaagtctt attgattgtc tgggccaaca
      181 ctaatccatt ggtaaaagtt ggggaccagg caagaatggt cagaaccaaa accgccgatg
      241 ctccaattga actgattcgg aatctcattt acgttcctcc tgttgaagtt gttcatgaca
      301 ccaactcgtc gggtcgctcg cggttcgcac aaattgcggc gacgaaccac gacaacggca
      361 acaaacacag tgcagcgtta attccaaaga gcgcattgat cggattcgat ttctcgtgaa
      421 ggtcatagcg cacccagtac gagagccaca ccagagcgat cgcggtcgca attgcggcga
      481 ggacgactgc agccgaagaa cgatccccac gccgccgccg ccgaatcgcg cgaatcagac
      541 ctatgactga gccgaccgtc acgaccgcac cggtaattag aatcgagccc agagttatca
      601 acagctcgaa aagtgactta tcaagaccgg gaacggtgga tggttccagt aaagccaacg
      661 ctactccaat tagatgtgac gcgcgcattt gccgataact tgagtccgcc tcattgaagt
      721 acacaatcct cgagcgaagg ctcgtcggtc gccaccttgc ccatgcactt tccttttacg
      781 gtgaccttct gcccagtctt aagtttctca atcgcatccc gcgcgtcgac cgcaaaacca
      841 aaacaattaa cgatcggttt ctgatttcca tccatcagaa cgatggctgg tcggcccacg
      901 cctccggcgg gaatgctgac cgttcctacg gttccgcgaa ctatcacaag ttttccctga
      961 tacaacttgt ctgcgtcagc ctcatttgcg tgataggcat tggacaagtc ctcagctgag
     1021 atggttatcc ccggaccttc tcgctcagca cgcttctcgt tcatagcttt gtggagattt
     1081 gagcagccga gaatcagccc aagccagagc gcgagagtaa cgaaaacgga aatgctgcta
     1141 ttttgagttt tcattttt
//
LOCUS       DATCGC010000225         1053 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_302575, whole genome shotgun sequence.
ACCESSION   DATCGC010000225 DATCGC010000000
VERSION     DATCGC010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1053
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_302575"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1053)
                     /locus_tag="VIJ87_02240"
     CDS             complement(<1..>1053)
                     /locus_tag="VIJ87_02240"
                     /inference="COORDINATES: protein motif:HMM:NF012618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HEY5443298.1"
                     /translation="GNQVATGGLNSPTVIWNARTGKQQLKLKGRTNQAYKISFSADGN
                     RLFSGGRTFWDLRTGRGLRILSQPNDQMIGFPSPDGLKLVVAEPNTRILSVFETQTAR
                     QVNRLEAKVEGVVQSVSFSRDSSIMAATYSPAKRVSSPDQFLNSGSQIKIWDVGSGRE
                     LNTFTLQARCVDAIFSPDARFIATLDVAGNISLWDSGSGKKLRDITDHNGKATAIAFS
                     EDSTKIAIGSFLSDGTSNSPGEVAIWDLKTNRTSGVLRGSQRGITNVAFTTDGQWIAA
                     SATDNTIQIWDVTSQRPLSSLKGHTANINSIAFSPNSRLLASAGDDGSTFLWDTKTGD
                     HLLTLISLDDGGEWITV"
BASE COUNT          246 a          258 c          270 g          279 t
ORIGIN      
        1 acagtgatcc attcgccgcc atcatccagt gagatcagtg taagcaaatg gtcgccggtt
       61 tttgtgtccc aaagaaaagt agatccatcg tctccggcgg aagcgaggag acgcgagttt
      121 ggactaaagg caatcgaatt gatattagcg gtgtgtccct taagagatga cagtggtcgt
      181 tgagaagtta cgtcccagat ttgaatcgtg ttgtccgttg cgcttgctgc tatccattga
      241 ccatcagttg taaaagcgac attggtgatg cctcgctgac tgcctcttaa aactccgctg
      301 gtacggtttg ttttcaaatc ccaaatcgct acttctcctg gtgagttcga agtgccgtca
      361 gagaggaaac taccgatcgc aatctttgtg ctgtcttcac taaaagcgat cgcagtggct
      421 ttaccgttat gatcggtaat atcgcgtagc tttttaccgg agccgctatc ccaaagcgaa
      481 atgttgccgg caacgtcaag tgtggcgata aaccgagcgt cagggctgaa aatcgcatcg
      541 acgcatctgg cttggagcgt gaacgtattg agttcgcgac cagagcctac gtcccagatc
      601 tttatctgac tcccagagtt caagaattga tccggacttg agactcgttt agccggagaa
      661 tacgtcgctg ccataatgct gctatcgcga ctgaagctga cactttggac cactccctca
      721 accttggcct caagcctgtt cacttgacgt gctgtttggg tttcaaaaac gctaagtatt
      781 ctggtgtttg gttcagctac gacaagttta agtccatcgg gagaagggaa accgatcatc
      841 tggtcgtttg gttggctgag tattcgtaat ccgcgacccg tacgcagatc ccagaaggta
      901 cgacctcctg aaaataaacg gttcccatcg gcactaaacg agatcttgta cgcctgatta
      961 gttcggccct tgagctttag ttgttgctta ccggtcctgg cgttccagat aacggttggg
     1021 gaattcaacc cgccggtggc gacctgattg ccg
//
LOCUS       DATCGC010000226         1515 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_136302, whole genome shotgun sequence.
ACCESSION   DATCGC010000226 DATCGC010000000
VERSION     DATCGC010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1515)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1515)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1515
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136302"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..635
                     /locus_tag="VIJ87_02245"
     CDS             <1..635
                     /locus_tag="VIJ87_02245"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEY5443299.1"
                     /translation="PKADLTEPAQTKEKRVSQPDKLANLPALATGYHIPAQSSPDFPA
                     MALLVQILQGDDSSRWYQRLVKEKELTLDLTGGLNYFGNEFDYTGPMIMTTRTTFKPG
                     HTVDEVLKEMDAVTAEIVAKGITDKELADAKVRYKSNFYSQLESSFGKAHLLSVLALF
                     RDDPNQINSLLTPFENVTAAQVKAAAAKYLVASNRTVIERVPEAKSQSGQ"
     gene            690..>1515
                     /locus_tag="VIJ87_02250"
     CDS             690..>1515
                     /locus_tag="VIJ87_02250"
                     /inference="COORDINATES: protein motif:HMM:NF012879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HEY5443300.1"
                     /translation="MKLLLAAILLSISTLPIVAQQKTPPPPGPARPLNLPKFTEKKLA
                     NGLTVILAPLPNVPKVSAILTFRSATNGTDRTNHPGIAQIAAGLVNEGTDTRTSKQIK
                     EELRSIGGTLGLGSDPDQTTMTATALSEFSSRLFELMSDVTQHASFPETELKLAQENT
                     IQQIRAGRANPGFLVNERFQKAVFGDHPYGFVVPDEKSISTLTRDDLKSFVTKYYIPN
                     AAHLIVVGDIEPDKTLAEIEKAFGSWKSGTVPADENPPLPVRDKRQIYFVNRPGSVQ"
BASE COUNT          408 a          393 c          371 g          343 t
ORIGIN      
        1 cacccaaggc tgatttgact gaacccgcgc aaacgaaaga aaaacgggtt tcccaacctg
       61 acaaactagc caatcttccc gcactggcaa ctggctacca cattcccgcg caaagctcgc
      121 cggactttcc agcgatggcg ctacttgtac aaattctcca gggtgacgac agctcgcgtt
      181 ggtatcagcg gctcgtgaaa gagaaagaac tgacgcttga tctaaccggc ggtcttaact
      241 acttcggaaa cgaatttgac tacaccggcc cgatgatcat gacgaccaga acgactttca
      301 agccgggcca cactgttgac gaagttctca aagagatgga tgccgtcacc gcggaaattg
      361 tcgcgaaagg gattactgac aaagagcttg cggatgcaaa agtcagatac aaatcaaact
      421 tctacagcca actcgaatcg agttttggca aagctcattt gctgtctgtc ttggctctct
      481 tcagggacga tcccaatcag atcaattccc tgttgacgcc gtttgagaac gtcactgccg
      541 cccaggtaaa agctgcggct gcgaagtatc tcgttgcgag caatcgcacg gttatcgagc
      601 gcgttcctga ggcgaagtct caaagcggcc aatagcaaat tatttcgagt gtctctggtg
      661 agtaatcagc gactatgaaa ggtactcaaa tgaaactcct acttgcagca attcttttat
      721 cgatttcgac actccccatt gtcgcgcaac aaaaaactcc gccaccacct ggtccggcga
      781 gacctttgaa tctgccaaaa ttcactgaaa agaaactcgc caatggacta acggtaattc
      841 tggcgccgtt gcctaacgtg cctaaagtgt ccgcgattct tactttccga tcagcaacta
      901 acggaacgga tcgaacaaat catccgggga ttgctcaaat cgcggccggg ctcgtaaatg
      961 aaggaacaga cacacgcacg agtaaacaga tcaaggaaga gcttcgttca atcggcggca
     1021 ctctgggact cggcagcgat ccggatcaaa cgacgatgac tgcaaccgcg ttgtctgagt
     1081 tttcaagtcg cctgttcgaa ctgatgagcg atgtaactca gcatgcgtcg ttccccgaaa
     1141 cggagttgaa gctggcccag gaaaacacta ttcagcagat tcgcgccgga cgcgcaaatc
     1201 ctggatttct cgtcaatgag cgttttcaga aagcagtgtt tggggatcat ccatacgggt
     1261 ttgtggttcc cgatgaaaag tcgatcagta ccttgactcg tgatgatctg aaatcgttcg
     1321 tcacgaagta ttacattccg aatgctgctc acctgattgt ggtcggagat attgaaccgg
     1381 acaaaacgct ggctgaaatt gaaaaagcgt ttggtagttg gaagagcggt acagttccag
     1441 ccgacgagaa tcctccgttg cctgttcgcg acaagcgcca gatctatttc gtgaatcgac
     1501 caggctcggt tcagt
//
LOCUS       DATCGC010000227         1071 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_369300, whole genome shotgun sequence.
ACCESSION   DATCGC010000227 DATCGC010000000
VERSION     DATCGC010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1071)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1071)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1071
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_369300"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..673)
                     /locus_tag="VIJ87_02255"
     CDS             complement(<1..673)
                     /locus_tag="VIJ87_02255"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY5443301.1"
                     /translation="MDGLSPNSDLSHYRIVSKLGAGGMGEVYLAQDTKLDRKVALKIL
                     TADAASNRDRIERFIREAKSAAALSHPNIAQIFEIGEHDGTYYIAMEYIDGVTLREKI
                     HRERTELRKLLRYLQHVAEGLSKAHSSGIVHRDLKPDNIMITRDEHAKVLDFGLAKLT
                     ERRRDAATERRGEEDPTIALSPRRPVSPPLSTPGLIMGTVGYMSPEQAQGKINEIDQR
                     SDIFSF"
BASE COUNT          246 a          273 c          280 g          272 t
ORIGIN      
        1 cgaacgaaaa gatgtcagag cgctgatcga tttcatttat ctttccctgg gcttgctcgg
       61 gagacatgta accgacagtg cccatgatga gaccgggagt cgacaaaggc ggggacaccg
      121 ggcgacgggg tgatagtgcg attgtcggat cctcttcacc ccgtctctcc gtcgccgcgt
      181 ctctccgtct ttcagtaagc ttagccaacc caaagtccaa caccttcgca tgctcgtctc
      241 gcgtgatcat gatgttgtca ggtttcaggt cgcgatgaac tatcccggag gagtgcgcct
      301 ttgagaggcc ttcggcaacg tgctgcaagt agcgtaacaa cttcctgagt tcagttctct
      361 cgcggtggat cttttcgcgc agcgtcacgc catcgatgta ctccatcgcg atgtagtacg
      421 tcccgtcgtg ttcaccaatc tcgaagatct gggcaatgtt cggatgactc agtgcggctg
      481 ctgattttgc ttcgcgaata aaccgctcta ttcgatctct gttagaggcg gcatcggcag
      541 tgagaatctt tagggcgact ttgcgatcca gtttggtgtc ttgggcaaga tagacctcac
      601 ccattccgcc agctccgagt ttggagacaa ttcgatagtg cgagagatca gagttagggg
      661 aaagtccgtc cacttagctg ggtcttagtc cgaagggagt ctggagcttg atagatgatg
      721 acgctatctc ttggctgtca tttaagcaca ggaagggctt tgcacaaaaa ggtaagtccc
      781 tgcttgtcga ttcccttcag taacgtcact gaagggtatc gaggttccgg acaaaaaact
      841 tttctattga cgtagtcgtc tcagagcgta tataacctat tggttatgaa acctattggt
      901 tatacgcaat gactagtaca caacaattga acgcgacatt cttagcgctc gccgatccaa
      961 caaggcgggc aatcctggct catctggcca atggtgaggc gtctgtcaat gaactggcgc
     1021 aaccacacgc catgagtcaa ccagcaattt ccaagcacct gaagattctc g
//
LOCUS       DATCGC010000228         1186 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_469182, whole genome shotgun sequence.
ACCESSION   DATCGC010000228 DATCGC010000000
VERSION     DATCGC010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1186)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1186)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1186
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_469182"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..361
                     /locus_tag="VIJ87_02260"
     CDS             <1..361
                     /locus_tag="VIJ87_02260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443302.1"
                     /translation="HRSQQEQHHQYQKRCPQSHKRRCGRRLQTPSRPYIDEVAENADE
                     EDDENQQNDTRAHVKTKPPVGKNGLLMSEQKPYKLVHWLVPDIIHTDPVRDSETPDYS
                     PVSSRDKLGGCLAREEK"
     gene            651..>1186
                     /locus_tag="VIJ87_02265"
     CDS             651..>1186
                     /locus_tag="VIJ87_02265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443303.1"
                     /translation="MTNRHAKWALVLVLLIVIVLTGFIAEISSSARKNASDEPASQGR
                     PITPAGKLLPDLTTRQTAVGALPVDFVRSPDNLGPDRGGRYLIAVNSGYGIQFSSEGN
                     KGQQSLGVIDLNATGVPAVIQNIYFPSPQSVNVGVAFSQKPNDDGSYQFYVSGGFENK
                     IWIFRYLPKNQIPITPASP"
BASE COUNT          308 a          306 c          315 g          257 t
ORIGIN      
        1 ccacaggtct cagcaggagc agcaccatca gtatcagaag cgctgccctc aaagccacaa
       61 gcgacgctgt ggtcgtcgtc ttcagacgcc atcgaggcct tatatagatg aagtagctga
      121 aaacgccgac gaggaggacg acgagaacca acaaaatgac acccgggcgc acgtcaaaac
      181 caaaccgccc gttggtaaaa acggcctgct catgtccgaa caaaaaccgt acaagttggt
      241 tcattggttg gtgcccgaca ttatacacac cgacccggta cgggattccg aaacgccaga
      301 ttattctcct gttagtagcc gcgacaaact aggcggttgt ttggctcggg aggaaaagtg
      361 acgagggtac gaagaaatgg aggacgtgac gaagaatgag gggaggttgg tcttgggtag
      421 cccggtgcag tagcccgact gtcaaggagg gcttggctta cgaggtcgcg tctcgatgga
      481 gtgagccctc cttgacagtc gggctactgc accgggctac tcaacccact aaggtcccag
      541 aagagccgac cttttttgtt aaccaggatt ttggtttcta attccaaggt gagtgctaca
      601 ctcccgtccg aaaaatcaga cacatccaat aagacggacg gttaccacaa atgacaaaca
      661 gacacgccaa gtgggcgctt gttcttgtac tgctcattgt tattgttctc actgggttca
      721 tcgccgagat ctcttcatcg gcgcgcaaga acgcgtcgga cgagccagcg agtcaaggcc
      781 gcccgataac tcccgcagga aaactcctcc cggacttaac cacaagacaa actgcagtcg
      841 gagcgcttcc ggtggacttt gtacgaagtc cggataactt gggtcccgat cgaggtggcc
      901 gatacttgat tgcggtcaat agtggatacg gaattcagtt tagtagtgaa gggaacaagg
      961 ggcagcaatc gctcggcgtc attgacttaa acgcgactgg agtaccggcc gttattcaga
     1021 atatttactt tccctcgccg cagagcgtca acgtgggtgt cgctttttca cagaagccaa
     1081 acgacgatgg ctcatatcag ttttacgttt cgggagggtt tgaaaacaag atttggatct
     1141 tccggtactt acccaaaaat cagattccaa ttactcctgc ttctcc
//
LOCUS       DATCGC010000229         1677 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_103073, whole genome shotgun sequence.
ACCESSION   DATCGC010000229 DATCGC010000000
VERSION     DATCGC010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1677)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1677)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1677
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103073"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..77
                     /locus_tag="VIJ87_02270"
     tRNA            1..77
                     /locus_tag="VIJ87_02270"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:35..37,aa:Ile,seq:gat)
     gene            97..173
                     /locus_tag="VIJ87_02275"
     tRNA            97..173
                     /locus_tag="VIJ87_02275"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:131..133,aa:Ala,seq:tgc)
     gene            453..>1677
                     /locus_tag="VIJ87_02280"
     rRNA            453..>1677
                     /locus_tag="VIJ87_02280"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          497 a          337 c          455 g          388 t
ORIGIN      
        1 gggcgattag ctcagctggt tagagcgcgt cactgataat gacgaggtcg gaggttcgag
       61 tccctcatcg cccaccatac gagatcagcc acttatgggg acatagctca gttggctaga
      121 gcacctgctt tgcaagcagg gggtccaggg ttcgagtccc tgtgtctcca ccagaggtaa
      181 tagtgtagca attttatcag cactttttgc tttacaaccc ctgtggaaac tgatatcatg
      241 aaacagctgc ttgagtttag acaagaggcc ataagatagc ttccagtgta aactcaagat
      301 caaggcacca aacgtgggct tccttgagtt tgtaacttaa aaatttagta gatattgaga
      361 aaagcaaatt tttaacaaac ggcatgttgt tggtgaatac caataactag tcaattgcac
      421 aagaagtaaa ctttcgagtt tgcttcgaaa cataaaaagt tacacaagcg cacacaaagg
      481 atgccttgac gtaagatacc gatgaaggac gtgcatggct gcgataagct tcggggagct
      541 agtcaacgac gcgttgaacc gaagatttcc gaatggggaa acccggctag agttatgtct
      601 agtcacacct atctgaacac ataggatagg gtgtaggtaa ccgcctgaac tgaaacatct
      661 tagtagggcg aggaagagaa aataaacaat gattccggta gtagtggcga gcgaatccgg
      721 aagagcccaa actttttagg tttttgtctg ctagtttact aggagacaaa taagttggta
      781 gacgaatatc taaagagggt tgtgacatta caaacaaccg gtacggagcc ctggatttat
      841 ccagaattcc gtattggaag cagaggctac cattactctg cataaggtta gaaattagcg
      901 aggcgagcag aacagtttgg aaagactggc catagacagt gaaagcctgg tatgcaaagt
      961 gtcgctaacc ttatatttgt tttgtcgagt agatcgggac acgtgaaacc ctgattgaag
     1021 ctggggggtc caccctccaa ggctaaatat atcttacgat cgatagagaa caagtaccgt
     1081 gagggaaagg ttaaaagaac cccggaaggg gagtgaaata gaacctgaaa ttgtgtgcgt
     1141 acaaggagtc ggagccggct tgtccggtga cggcgtgctt tttgtagaac gatccagcga
     1201 gttatttgca tgcgcaagcc taagtcatct gacggaggcg tagtgaaagc aagcctgaat
     1261 agggcgctta gtgcatgtga atagacccga aaccaggtga cctaaccatg ggcaggctga
     1321 agcgcaggta aaactgtgtg gagggccgaa ccgtagcgaa ttgcaacacg cccggatgac
     1381 ctgtggttag cggtgaaatg ccaatcgaac ctggagatag ctggttctcc tcgaaatagc
     1441 tttagggcta gcgttgtacg gtagctggta ggggtagagc tctgttttgg actgggggtc
     1501 gcaagattac ccacccttga taaactacga atactacatg cggaactacg gcagttagaa
     1561 cggcggggct aagctcgtcg ctcgaaaggg aaacagccca gaccatcatc taaggtccct
     1621 aaatacatac taagtgggaa acgaggtgag atttcttaaa caataaggat gttggct
//
LOCUS       DATCGC010000230         1190 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_169801, whole genome shotgun sequence.
ACCESSION   DATCGC010000230 DATCGC010000000
VERSION     DATCGC010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1190)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1190)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1190
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_169801"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            179..>1190
                     /locus_tag="VIJ87_02285"
     rRNA            179..>1190
                     /locus_tag="VIJ87_02285"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          303 a          283 c          378 g          226 t
ORIGIN      
        1 gaacagggga gcgcatcagg cacactgttg ggtcctgagg gatcgagtaa tcattcctct
       61 acgggccatc cccctcctcg aactgcccgg ccgctctgcg gccaggcaag cgggacgtca
      121 ggggtggcac cgcccgtatc ttgagaacta cacagtggac gcgagcatct ttgtagcaag
      181 acaagctact aagggcacat ggtggatgcc ttggcaccaa gagccgatga aggacgtagg
      241 agcctgcgat aagccccggg aagttggcaa ccgagctgtg atccggggat ttccgaatgg
      301 ggaaacccag ctggagtcat gtccagttac ctctgcctga acacataggg cagttggagg
      361 gaacgtgggg aagtgaaaca tctcagtacc cacaggaaga gaaaacaaaa gtgattccga
      421 gagtagtggc gagcgaaatc ggaagaggcc aaactcaagc agtgtgatag ccggcaggcg
      481 ttgctgtttg agggttgtgg ggccgcttgg ttggttctgc cgaaccgaca cagagtaaga
      541 aatcattgat gaagtcgaag cggactggaa agtcccggcg tagagggtga tacccccgta
      601 cacgtaagtc aatgactctg aagcgtcacc ccaagtaaca cggaacccct gaaattccgt
      661 gtgaatctgg cgggaccacc cgttaagcct aaatactcct tggtgaccga tagcggacaa
      721 gtaccgtgag ggaaaggtga aaagtacccc tggcggggag tgaaatagta cctgaaacca
      781 tgtgcctaca atccgttgga gcgaagactt cggtctttgt gacagcgtgc cttttgaaga
      841 atgagcctgc gagtttgcgt tgtgtggcga ggttaacccg tgtggggaag ccgtagcgaa
      901 agcgagtccg aatagggcgc ctgagtggca cgatcaagac ccgaagcgaa gtgatctatc
      961 catgggcagg ttgaagcgcg ggtaagaccg cgtggaggac cgaacccacc agggttgaaa
     1021 acctggggga tgacctgtgg ataggggtga aaggccaatc aaacttcgtg atagctggtt
     1081 ctccccgaaa tgcatttagg tgcagcgttg cgtgtttctt gccggaggta gagctactgg
     1141 atggcctagg gggcctacaa gcttaccgaa gtcagccaaa ctccgaatgc
//
LOCUS       DATCGC010000231         1106 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_69693, whole genome shotgun sequence.
ACCESSION   DATCGC010000231 DATCGC010000000
VERSION     DATCGC010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1106)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1106)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1106
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69693"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..762
                     /locus_tag="VIJ87_02290"
     CDS             <1..762
                     /locus_tag="VIJ87_02290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443304.1"
                     /translation="SSSLLGQPPPTSRDLKPAKASPAATTQQIQDQLKKLKEALDNLT
                     KAGIKAEPKAIDPSKPAEEISVKPSDFIIKLPDNINNTVAATKMLLLFLEQFGLIDPR
                     EAAVQPNLNPPGQPSIPSRCYLDPNCSQCFADATAKLKKARGLLETQYVIYKQTELKA
                     GRIIEMADAAASLSPYGKLLWNVQKDNPKEPMNQAREKFYATYDSNLVKLLNMVNEGL
                     IAIGDCERVNYGEQDWHNRFGMPYYLFVRERYTRK"
     gene            complement(872..>1106)
                     /locus_tag="VIJ87_02295"
     CDS             complement(872..>1106)
                     /locus_tag="VIJ87_02295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443305.1"
                     /translation="EFISEVVFNHDEIKLTPEDLRLSGKFQATFKTKLWLPYQDRVTL
                     IERQRQLLTGANSKTDAGTEQYECSRTRTGLSR"
BASE COUNT          295 a          275 c          253 g          283 t
ORIGIN      
        1 agttcttcgc ttcttggtca gccaccgcct acttcgcgcg atttaaaacc agctaaagct
       61 tctccagcag ctacaactca acaaattcag gaccagctca agaagttaaa agaagcgctc
      121 gacaatctga ctaaggccgg catcaaggca gagccaaaag cgattgatcc cagcaaacca
      181 gccgaagaga tctccgtgaa gccgagtgat ttcatcataa agcttccgga caatatcaat
      241 aacacggttg cagccacgaa gatgttgctg ctcttcctgg aacaattcgg gctgattgat
      301 ccgcgcgaag cggcagtgca acccaatctc aatcctcctg gccagccatc tattccttca
      361 cgttgttatc tcgatccgaa ttgcagtcaa tgcttcgctg atgccactgc caagcttaag
      421 aaagcgcgtg gtcttttaga aacacaatat gtaatctaca agcagaccga actgaaggcg
      481 ggacgaatca tcgaaatggc ggacgctgct gccagtctca gtccatacgg aaagttgtta
      541 tggaacgtcc aaaaggacaa tccgaaagaa ccgatgaatc aagctcggga aaaattctac
      601 gccacctatg acagtaattt ggttaagttg ctcaacatgg tcaacgaagg gttgattgcc
      661 attggagatt gtgagcgcgt caactacggt gaacaggatt ggcacaatcg ctttggcatg
      721 ccttattacc tgttcgtaag agaacgctat acgcggaagt agttgcagcc aaagggtgga
      781 ccagattgtt tttatgggat gtatggttcc gtcgttaaca ttttgttcga cgattaaatt
      841 tcacacagaa gcacttcccc ggtctccacc gttacctcga caaacccgtc ctggttcgcg
      901 agcattcgta ttgctcggtt cccgcatctg tcttagaatt cgcgcctgta agtagttgtc
      961 tttgtcgttc tattagcgtc accctgtctt ggtagggcaa ccatagtttc gtcttgaagg
     1021 ttgcttgaaa ttttcctgaa agccgcaaat cctcaggcgt tagcttgatt tcatcatggt
     1081 tgaagacaac ctcgcttatg aattcg
//
LOCUS       DATCGC010000232         1614 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_402761, whole genome shotgun sequence.
ACCESSION   DATCGC010000232 DATCGC010000000
VERSION     DATCGC010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1614)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1614)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1614
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_402761"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..655
                     /locus_tag="VIJ87_02300"
     CDS             <1..655
                     /locus_tag="VIJ87_02300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443306.1"
                     /translation="TWIEGYDYGQAQPSCYGLAFVTPEQHVVLCDGFYQKEMSIDQQV
                     SAIRRIRADWSAELDDMHKINADPSIFGRRTVNKRTVGKTIADMFKDDDIRMRRGNND
                     VANGIIKVGSYLNINHRLLHPIRRVAGSPRLLVNAKLDWWTDEIAGYFWQQSTSGERI
                     DKPTDRNDHAMDMTKYLLSEMPDIGKYAIPANERVPSWMLWQEKDRSAENPRAHRYG"
     gene            648..839
                     /locus_tag="VIJ87_02305"
     CDS             648..839
                     /locus_tag="VIJ87_02305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443307.1"
                     /translation="MANTKSTKRELFDMAAEVRGETEKALRLYDGKTTAWVPKSQVED
                     NNDGTFTMPMWLATDKGFV"
     gene            839..>1614
                     /locus_tag="VIJ87_02310"
     CDS             839..>1614
                     /locus_tag="VIJ87_02310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443308.1"
                     /translation="MADDYGNPPPAEPASDYNTYEGVTADPNAVVDDQPMYRVIGESK
                     IPVSKHRGPLWRSRYDQGKSAMSKNTDAWSEAYRYYRHDHTRTNAPSRTEEDSTAGKP
                     LQGTFDSTENLVFANVSALVPMLFTKNPEAEFTSEDKADEPKQRTLEKLVNVLAAKKT
                     SPGLNLKRKVKRNIVSTTLTNVGWFECGYTLREQSSEAALEEVKKLSAELEQAKSQKD
                     IKECEGKLLALEETIDMLTPSGPWVKVRRPDQVIVDPTAT"
BASE COUNT          472 a          392 c          417 g          333 t
ORIGIN      
        1 cacgtggata gaaggctacg actatggtca agcgcagcct agttgctacg gtcttgcatt
       61 cgttactccc gaacagcacg tggtgttgtg tgatggcttc taccaaaagg aaatgtcaat
      121 cgaccaacaa gttagtgcta tacggcgtat acgtgccgat tggagtgctg aacttgacga
      181 catgcacaag atcaacgctg atcccagtat attcggtcgt cgaaccgtca acaagcgtac
      241 agtaggaaag acgatagctg acatgttcaa agacgacgac atacgcatgc gtcgtggaaa
      301 caacgatgta gccaatggga ttattaaggt cggaagctat cttaacatta atcatcgctt
      361 gcttcatcct attcgccgtg tggctggctc cccgcgcttg ctcgttaacg caaagctcga
      421 ttggtggaca gacgagattg caggatactt ctggcagcag tctactagtg gcgagcgtat
      481 agacaaacca acagatcgca acgatcatgc gatggacatg actaagtact tactcagtga
      541 gatgccagat ataggcaagt acgcaatccc tgcgaatgag cgtgtacctt cgtggatgct
      601 gtggcaagag aaagaccgca gcgctgagaa cccaagagca catcgctatg gctaatacaa
      661 agtcaactaa gcgtgaactg ttcgacatgg ctgcagaagt acgtggcgag acagagaaag
      721 cactacgctt gtacgatggt aagacaactg cgtgggtgcc aaagtcgcaa gttgaagaca
      781 acaacgatgg cacattcaca atgcctatgt ggcttgctac tgacaaaggg tttgtctaat
      841 ggctgacgac tacggcaatc ctccacccgc ggaacctgct tccgactaca acacctatga
      901 aggtgtcaca gccgatccta atgctgtagt agatgaccag cctatgtatc gtgtcatagg
      961 tgaaagcaag atacctgtct ctaaacaccg tggcccgttg tggcgttcgc gctacgatca
     1021 gggcaagtct gcaatgagca agaacacaga tgcgtggtcg gaggcgtata ggtactacag
     1081 acatgaccat acccgtacta atgctccatc acgaactgag gaagatagta cagccggtaa
     1141 acccctccaa ggtacgtttg acagcactga gaacttggta tttgcgaacg tcagcgctct
     1201 cgttcctatg ttattcacta aaaacccgga agccgagttt acgagtgaag acaaagcaga
     1261 cgagccgaag cagcgcactc tagagaagct agtcaacgta ctagctgcta agaagacctc
     1321 accgggattg aacctcaagc gcaaggtcaa gcgcaacatc gttagcacta cactcaccaa
     1381 cgtaggctgg ttcgagtgtg gttacacact acgcgagcag agcagcgaag cagcactaga
     1441 ggaagtcaag aaactcagtg ctgagctaga gcaagccaag tcgcagaagg acattaaaga
     1501 gtgcgaaggc aagctgctag cgttggaaga aaccattgac atgctcacac ctagtggtcc
     1561 gtgggtgaaa gtacgccgtc cagaccaagt aatagtcgat ccaacagcta ccga
//
LOCUS       DATCGC010000233         1000 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_169932, whole genome shotgun sequence.
ACCESSION   DATCGC010000233 DATCGC010000000
VERSION     DATCGC010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1000
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_169932"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..952)
                     /locus_tag="VIJ87_02315"
     CDS             complement(<1..952)
                     /locus_tag="VIJ87_02315"
                     /inference="COORDINATES: protein motif:HMM:NF012239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEY5443309.1"
                     /translation="MEVERSMRVLDGLIALFSAVDGVEPQSETVWRQANRYKVPRIGF
                     VNKMDRSGADFLMVVKQVREMLGAKAVPLQLPIGAEDDFKGVVDLITMKGVIWDMATE
                     GMTFEEIPVPADMLEEAEYWRSQLIEAVAEYDDKLMEKFFDDPKTITEAEVHEAIRKA
                     TLDLSIVPMMCGSSFKNKGVQTALDAVCRYLPSPVDLEDTIGTDPDTGEQITRKPDPK
                     EPFAALAFKIMTDPFVGRLAFFRCYSGHLDAGSYVKNIRSGKNERISRIMKMFANKQN
                     PIDFIEAGDIGAAVGFKEIKTGDTLCHEDHPITLENMFIPE"
BASE COUNT          247 a          256 c          214 g          283 t
ORIGIN      
        1 gctcaggaat gaacatgttc tccaaagtga tcgggtgatc ttcatggcaa agtgtatcac
       61 cagttttgat ctccttgaaa ccaacagccg caccaatatc accggcttcg atgaaatcga
      121 tagggttctg tttgttggcg aacatcttca tgatacggct gatacgctca ttctttccac
      181 tccttatatt cttcacataa gaccctgcat ctaaatgacc gctgtaacac ctgaagaatg
      241 caagacgacc gacaaaagga tcggtcatga tcttgaaagc cagggccgca aatggttctt
      301 taggatccgg cttgcgggtg atctgttcac ctgtatcggg atcggtacct atggtatctt
      361 caagatccac gggtgaagga aggtaacggc agaccgcgtc gagtgctgtc tgcacgcctt
      421 tatttttgaa tgaagatccg cacatcattg gcacgatgct caggtcgagc gttgctttcc
      481 tgattgcttc atgcacttct gcttctgtga ttgtttttgg atcatcaaag aatttctcca
      541 tcagtttgtc gtcatactca gcaacagctt caatcagctg gctcctccaa tattctgctt
      601 cttccagcat gtctgccgga acaggaattt cttcgaaggt cattccttct gtagccatat
      661 cccaaatcac gcctttcatg gtgatcaggt caaccacacc tttgaaatcg tcttcagctc
      721 cgattggcaa ttgcaatgga actgctttcg ctccaagcat ttccctgacc tgcttaacta
      781 ccattaaaaa gtcggcaccg gaacggtcca tcttattcac aaacccgata cggggaactt
      841 tgtaacggtt tgcctgtctc caaacggttt cactttgcgg ttccacgcca tcaaccgcgc
      901 tgaaaagagc gataagaccg tccagaacgc gcattgagcg ttcgacttcc acggtaaagt
      961 ctacgtgacc gggtgtatca attatattga aatagtattt
//
LOCUS       DATCGC010000234         1020 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_237059, whole genome shotgun sequence.
ACCESSION   DATCGC010000234 DATCGC010000000
VERSION     DATCGC010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1020)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1020
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_237059"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(16..246)
                     /locus_tag="VIJ87_02320"
     CDS             complement(16..246)
                     /locus_tag="VIJ87_02320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443310.1"
                     /translation="MDMFGRVGLVEIPILIAPDQKAWLDRMIKEGKIAIPPGGTLEKG
                     SLYSMFIRMLLHNAMEEQKRQEALDAEDEDDE"
     gene            387..932
                     /locus_tag="VIJ87_02325"
     CDS             387..932
                     /locus_tag="VIJ87_02325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443311.1"
                     /translation="MRSNEGKISYGWLLAVVSILWMTCPTSVFAAKHLTKKDEAGSSV
                     HRASAAVPSESNALTTRISTRKVRGISTIRQRSFPRIVRRSTDSAGRSKREQTLDASR
                     IRVIDGETFSYGGESIRVQGVTAPLALEQGGKEARQQLEDLLQQGRVTMIPKGSDRLG
                     TRVAEIRVDHRNVADLINWSR"
BASE COUNT          243 a          262 c          281 g          234 t
ORIGIN      
        1 cggatacatt gacgcctact cgtcgtcttc atcctcggca tctaacgctt cctggcgctt
       61 ctgttcctcc atcgcattgt gcagcagcat ccggatgaac atggagtaca gggacccctt
      121 ttcgagcgtc ccaccaggag gaattgcgat cttgccttcc ttaatcatgc gatccagcca
      181 agctttttga tccggcgcga tgaggatggg gatttcgact aacccgactc gtccaaacat
      241 atccataaaa atactccttc ctgaaacgtt ggccatttca gcatgcgctt ttggaggttg
      301 tcaaccgacg cgcatgggac ttgcaatctt gtcgctgcaa gtgactgacg atggtcgacg
      361 tttggtgaac aaagggaggg gaaggcatga gaagcaatga agggaagatt tcgtatggat
      421 ggctattggc cgtcgtgtcg atactgtgga tgacctgccc gacttccgtc tttgcggcca
      481 agcacctgac gaagaaggat gaagcggggt ccagcgtcca tcgagcgtcg gcggccgttc
      541 cgagtgaatc caacgccctc acgactcgga tcagtacgcg caaagttcga ggcatcagca
      601 caatcaggca acgtagtttc ccacgcatag taaggcgttc cactgattcg gctgggaggt
      661 cgaagcggga acaaacactc gatgcgtccc gtatcagggt cattgacgga gaaacgtttt
      721 cctatggagg agagagcatc cgtgtccaag gggtcactgc gccattggct cttgagcagg
      781 gaggaaaaga ggcccggcaa cagcttgagg acttgttgca gcaaggccga gtcaccatga
      841 ttcctaaagg ctccgaccga ttaggtactc gagtcgcgga aattcgggtg gatcatcgca
      901 atgtggcgga cctaatcaac tggtcccgat agctctgaca tgatcacgta gtagtttgcc
      961 tgatagccaa gtgccgaatc atctcctata atattttcaa ctcaaggaag agttctgtca
//
LOCUS       DATCGC010000235         1051 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_402856, whole genome shotgun sequence.
ACCESSION   DATCGC010000235 DATCGC010000000
VERSION     DATCGC010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1051)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1051)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1051
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_402856"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1049
                     /locus_tag="VIJ87_02330"
     CDS             <1..1049
                     /locus_tag="VIJ87_02330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443312.1"
                     /translation="RDGIIIERDTERQDPESYKVERRGQFAEIIDAFLRPEMVDRAYQ
                     GVPMRDGSTVSLRTNWSYPSFKFQYKAHLDPSSTTAGFGFALGHVEELEDTQGQLREH
                     VVFDIVKRWQPEQFPDRVIDWEVVLDEVVKYINIFQPYEVTFDQFQSGAPISFLNTYL
                     RKNNMGNIRVYEKTATSQYNWNRAEVFRTALYQGLVHIPNDTSDAEWSNRELKHLQQV
                     NTAGRFPRVDRQEIGPVTTKDMADCLMEVTEALIGNVIAKQARNSLGELSPAFGAEGG
                     YQIGGRNDQAMSTFYNGVAKKPSLNTFREQKKNADPLGRPSQRVREQLDSLTASRSGS
                     WNTRSRRGRPGRGY"
BASE COUNT          272 a          244 c          284 g          251 t
ORIGIN      
        1 accgcgatgg tattataatt gagcgtgaca ctgagcgcca ggatcctgag tcgtacaagg
       61 tagagcgccg tggtcagttc gcagaaatta ttgacgcctt cctccgtcct gaaatggtgg
      121 accgtgcgta ccagggcgtg ccaatgcggg atggcagtac cgtcagcctc cgtaccaact
      181 ggtcttaccc atcattcaag ttccagtaca aggcgcacct tgatccgtcg tctacgactg
      241 cggggttcgg atttgcgctc ggccacgtcg aagaattaga ggacacgcaa ggccaactgc
      301 gcgagcatgt agtctttgac attgtgaagc gctggcagcc agagcaattc cccgaccggg
      361 ttattgattg ggaggttgta cttgatgagg tcgtaaagta tatcaatatc ttccaaccat
      421 atgaggtaac ctttgaccag ttccaatccg gtgccccaat ctccttcctc aatacgtacc
      481 ttaggaagaa taacatgggc aatatccgtg tgtatgaaaa gaccgctacg tcacagtaca
      541 attggaatag ggctgaagta ttccgaacag cattatacca aggtctggta catataccga
      601 atgatactag tgatgctgaa tggtctaatc gtgagcttaa gcatcttcaa caggtgaaca
      661 cagccggtag gttccctcgc gttgaccgtc aggagattgg tcctgttact acaaaggaca
      721 tggctgattg tctgatggaa gtgacggaag cattgatcgg taatgtcatt gctaagcagg
      781 ccaggaattc attgggtgaa ttgtccccag cgttcggtgc tgagggtggt taccaaattg
      841 gggggcgcaa tgaccaggcc atgtctacct tctataatgg tgtggctaag aagccttcat
      901 tgaatacctt ccgtgaacaa aagaaaaatg cagacccact cggtaggccg tcacaaaggg
      961 taagggaaca gcttgatagt cttacggcat cacgttcagg cagttggaat acccgtagta
     1021 gacgtggcag gccaggccga ggttactaag g
//
LOCUS       DATCGC010000236         1543 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_402858, whole genome shotgun sequence.
ACCESSION   DATCGC010000236 DATCGC010000000
VERSION     DATCGC010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1543
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_402858"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            244..1356
                     /locus_tag="VIJ87_02335"
     CDS             244..1356
                     /locus_tag="VIJ87_02335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443313.1"
                     /translation="MSVPRLLAIALLISAESLAISHSVSAQKDNRELEIAARFAPVFY
                     QALGDKPRNDYITNFDFDGDWRGDNNWNNAGNTDFPLKAYIYYSVSETSTHYFIHYGV
                     FHPRDYKGGEKKGAILSELIREGAKASGQYDPTGLADEAALAHENDMEGALIVVKKNG
                     STLNGARVVFVEALHHNTFGHYETGEGSSIVKLEDQRPILYIEPRGHGIEAFTGDKKQ
                     VANKDFLRYVFDGRAVDPTKEDTVCRDLETKSCDKSVGYDLVSLSTLWAKAKGETNSM
                     FGVTFDYGEIKLSTSLNGNGSTEKTIKLGKVGCAFLGSVGGVNMARPPWGWFDREERD
                     VPLGQWFFDPATTVKRDFKLDASFSTSYVRLPFWAK"
BASE COUNT          404 a          409 c          403 g          327 t
ORIGIN      
        1 cgtaaatggt ctaacaaggt ttgaggcttt gcctcggcgg catagccgcg ttactaagat
       61 cccggcaacg gaaagccaga ggctttccgc acggagagcg gcacagccgc gtatgtggcg
      121 cccgttagta accgaagcca cacgctaccg cgcggtgtgg tactgacctc attatcgtga
      181 atacgctaac agcagacgag gtccaccttc ccaacctgaa aattgatctc caaggatttg
      241 aaaatgagtg tcccccgact ccttgccatc gcgctcctaa tctccgccga atcgctcgca
      301 atctcgcact cagtctcggc ccaaaaggac aatcgtgagc ttgaaatcgc cgcgcgtttc
      361 gcaccggtct tctaccaggc tctcggcgat aagcctcgca acgactacat cacaaacttc
      421 gatttcgacg gcgactggcg aggcgacaac aattggaata acgccggcaa cacagacttc
      481 ccactgaagg cctacatcta ctattccgtt tccgaaacat ctacgcacta tttcattcac
      541 tacggagttt ttcatccacg cgattacaag ggtggcgaga agaaaggcgc gatactgagc
      601 gaactgattc gcgaaggcgc aaaagccagt ggccagtatg atccgaccgg cctcgctgat
      661 gaagccgctc tggcccacga gaatgatatg gaaggcgcac tcatagtggt aaagaagaac
      721 ggaagcacac tgaacggagc gcgcgttgtg tttgtcgagg ctttgcacca caacactttt
      781 ggccactacg aaactggcga gggttcgtcg atagtcaaac tcgaagatca aagacccatt
      841 ctttacatcg aaccaagggg ccatggcata gaggctttta ctggcgacaa gaagcaggtc
      901 gcgaacaaag actttctgcg atacgtcttc gatggccgag cagttgatcc tacaaaagaa
      961 gacacagtgt gccgggatct tgaaacgaaa tcgtgcgaca aatcggtggg ctatgatttg
     1021 gtttcgcttt ccacactgtg ggcgaaagca aaaggtgaaa cgaattcgat gtttggggtg
     1081 actttcgatt acggcgagat caaattatca acgagtctta atggcaacgg cagcacggag
     1141 aagacaatta aactcggcaa ggtgggatgc gcgttccttg gatccgttgg cggagtaaac
     1201 atggcccggc ctccgtgggg ctggtttgat cgagaagaac gcgacgttcc cttgggccaa
     1261 tggttcttcg atccggcaac tactgtcaaa cgagacttca aattggacgc aagtttttcg
     1321 acgtcgtacg tgaggcttcc gttctgggcg aaatgattct ctgtcctacc gagccgcaac
     1381 caaatgacca cgaagtcagt accatgacgc ggtagcgtgt ggctcttgat cggagattcg
     1441 cgaaattcag tgagccacac gctaccgcgc cgtggtaccg acttcattgc tacaccgagg
     1501 aagcacagaa aagaagttcc aacaacttgt cctcaacact gaa
//
LOCUS       DATCGC010000237         1364 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_4679, whole genome shotgun sequence.
ACCESSION   DATCGC010000237 DATCGC010000000
VERSION     DATCGC010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1364)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1364)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1364
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4679"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..512
                     /locus_tag="VIJ87_02340"
     CDS             <1..512
                     /locus_tag="VIJ87_02340"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0030638 - polyketide metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HEY5443314.1"
                     /translation="LSERWDEHVKYEFATRNTDHTLETMVADSYVNHVPVMTGGVGHD
                     ELREFYSKRFIPQMPSDTAMTPVSRTIGVDRVVDEMVFEFTHTIKMDWMLPGVEPTGK
                     HVKVALVVIVHFRDGKLAHEHIYWDQASVLAQLGMIDATKLPVAGVESAEKVLDPGRK
                     SNDLMADTL"
     gene            590..>1364
                     /locus_tag="VIJ87_02345"
     CDS             590..>1364
                     /locus_tag="VIJ87_02345"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEY5443315.1"
                     /translation="MENKPPPTPPTAALRRDLGTVEAYAVLIGILIGAGIFQVTSTAW
                     AMTGPSVILGYAVLTPAILATSIPYAAYLSTPLGREPGGEYLHISRTLGGFRLAYVGS
                     WLKIISYIGAGAYLANALAGYVIALISDHLKPFHLPIALAFMVLFYLIHVIGILWFGR
                     MQVIMSALKLLALMVLILPGLFVLKGANYTPFITHGWQGFGASLLPLFFAYAGFESLA
                     QTAGEVKDSTKRLPKILLIGISITAVIYVLTSVVSFGVLP"
BASE COUNT          303 a          351 c          348 g          362 t
ORIGIN      
        1 cgttgtctga acgctgggat gaacacgtta aatacgagtt cgcgacccgc aacactgacc
       61 acacacttga aacgatggtt gctgattctt atgtgaacca cgtgccggtg atgactggcg
      121 gtgttggtca tgacgaactg cgtgagttct attcgaaacg cttcattcca caaatgccgt
      181 ccgacacggc gatgacgccc gtatcgcgca cgattggtgt cgatcgcgtt gttgatgaga
      241 tggtgtttga gtttacgcac acgatcaaaa tggattggat gttgccggga gttgaaccaa
      301 ctggaaagca tgtgaaggtc gcgctcgtcg tgattgttca cttccgcgac ggcaagctcg
      361 cgcatgaaca tatttactgg gaccaggctt cggtgctcgc acaactggga atgatcgatg
      421 ctacgaagtt accagtcgca ggcgttgaaa gcgcagagaa ggttctcgat cctggccgga
      481 agtctaatga cttaatggcc gacacccttt agtagctact aaagggtatc ggatcaagat
      541 cacttcaaac ttgaatcgcc aatgacaact gagaaatgtc aaatgacata tggaaaataa
      601 acctccccca actcctccaa ccgctgccct tcgtcgcgat ctcggcacgg ttgaggcata
      661 tgcagtccta atcggcatac tcatcggcgc cggcattttt caggtgacca gcaccgcgtg
      721 ggcgatgact ggaccaagcg tgattcttgg ttacgctgtt ttgactccgg caattctcgc
      781 tacttcgatt ccatacgctg cctatctctc gactccgctc ggtcgcgagc caggcggtga
      841 gtatctgcac atctcacgaa ctctgggtgg atttcgtctc gcgtacgttg gctcgtggct
      901 aaagatcatt tcctacatcg gcgctggagc atacctggct aatgcgctcg ctggttatgt
      961 gatcgctttg attagcgacc acctcaaacc atttcacctg ccgatcgcac tcgcgttcat
     1021 ggttctgttt tatctcatcc acgtgatcgg gattctgtgg tttggaagaa tgcaagtgat
     1081 catgtctgca ttaaagttgt tggcattgat ggttctgatc ctgcctggtc tcttcgttct
     1141 gaaaggcgct aactacacac cattcatcac gcacggctgg caaggatttg gcgccagtct
     1201 tttgccgttg ttctttgctt acgcaggatt cgaatcgctc gcgcaaactg ccggtgaagt
     1261 gaaagacagc acaaaacgtc tgccgaaaat acttctcatc ggcatcagca ttaccgccgt
     1321 gatctacgtg cttacttcag ttgtgtcgtt tggagttttg cctg
//
LOCUS       DATCGC010000238         1959 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_269818, whole genome shotgun sequence.
ACCESSION   DATCGC010000238 DATCGC010000000
VERSION     DATCGC010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1959)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1959)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1959
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269818"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..296)
                     /locus_tag="VIJ87_02350"
     CDS             complement(<1..296)
                     /locus_tag="VIJ87_02350"
                     /inference="COORDINATES: protein motif:HMM:NF014077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HEY5443316.1"
                     /translation="MTRILVTNDDGIHSDGLHKLETALKELGDVYVVAPASEMSGASH
                     SLTLARPLRIRQLDNRHWAIDGTPTDCVTLALNKILFPDELPDICVSGINHGGNL"
     gene            complement(445..648)
                     /gene="rpsU"
                     /locus_tag="VIJ87_02355"
     CDS             complement(445..648)
                     /gene="rpsU"
                     /locus_tag="VIJ87_02355"
                     /inference="COORDINATES: protein motif:HMM:TIGR00030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HEY5443317.1"
                     /translation="MAIVTVNSGESIESALRRFKRKVMTEEIIKDAKKHAFFIPPGQK
                     AKLKSALARKRNKKKGRMRIPRD"
     gene            complement(874..>1959)
                     /locus_tag="VIJ87_02360"
     CDS             complement(874..>1959)
                     /locus_tag="VIJ87_02360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443318.1"
                     /translation="NDQVGSIIRFALDNPKKIAFLSFQPVSFTGRDEEITEHRRLQQR
                     YTLSHLAHDVKNQVGITEPTRDWFPLSLMGAFADFADLVHGPQAEWGQVSCGCHPNCG
                     VGTAVMIDKENKEMRPVPEFLNIPGLVKDMQKITDAARGKWMSNLMMGLTLLKHYNPY
                     NSPSQFTLYELFKKFDKSFGLTGKDYGRVSGDRSVQDIEKRRSDRWNFLFIAGMWFQD
                     LFNYDFRRTEMCIIPYGTQEGEISFCAYNTGIGWRNIIENMHQNATVAKWYQEHGRHE
                     IFAGGKDVELTDKAHGMILNEVDLARPNKPQMEGPKTAHEEAVMMRKMYQEMVLNKQL
                     DIKAADKPVQIKGIGRKKEEPAEAVLV"
BASE COUNT          461 a          501 c          482 g          515 t
ORIGIN      
        1 agattgccgc cgtgattgat tccagaaaca caaatatctg gaagctcatc gggaaaaaga
       61 attttgttta aagccaatgt aacgcaatcg gttggagtgc catcgatagc ccagtgacga
      121 ttgtcgagtt gccggatgcg tagcggacgc gcgagcgtaa ggctatgcga ggctccactc
      181 atttctgacg ccggcgcaac cacgtagacg tcgcccaatt ccttaagggc tgtctctagt
      241 ttatggagcc cgtctgaatg aatgccgtca tcgtttgtga ccaggattct cgtcatatgg
      301 gattgcatcg agaggactcg acttaacaca ctacagtttc gatggcctcg ctcaaactca
      361 ggagcgtcca cttctcgacc ggttttttga aacggctggt gagatgagaa cgcggcctga
      421 gccgcgttcg gttgggagca ggaattagtc gcgcggaatt cgcatgcgac ctttcttctt
      481 attacgtttg cgggcgagtg cagatttcaa cttcgccttt tgacccggtg ggataaagaa
      541 cgcgtgcttt ttcgcgtctt tgataatttc ctcggtcatg actttgcgct tgaaacgacg
      601 caacgcgctc tcgatcgatt cacccgaatt tacagtaact atagccattc tctctatgct
      661 ttccttctca aataggtctg ttgaagttat ttaacacggc aagaacacgg ttggtcaagc
      721 ggaggcattg aagattgcag atttcagatt gaaattgtcc gaattcctgc tggttaatct
      781 gcaatctgca atttgaaatc tgcaatgacc tgacaagata aaccccgcga aacaagactc
      841 tgctcgcggg gtttacctag aaaccttcca aaactaaacc aacacggcct cggcgggctc
      901 ttctttcttg cgtccgatgc ccttgatttg aaccggcttg tcggcagctt tgatgtccaa
      961 ctgcttattg agcaccatct cctggtacat cttacgcatc atgacagcct cttcgtgagc
     1021 tgtctttgga ccttccattt gcggcttgtt tggacgggca aggtcgactt cgttcaagat
     1081 catcccgtgg gccttgtccg tcaattcgac gtccttgccg ccggcgaaaa tctcatgacg
     1141 accatgctcc tgataccact tagcaacagt agcgttctgg tgcatgttct cgatgatgtt
     1201 tctccaaccg attcccgtgt tgtaagcaca gaaggagatt tcgccttcct gtgtaccgta
     1261 cgggatgatg cacatttcag tgcgacggaa gtcatagttg aagagatcct ggaaccacat
     1321 gccagcgatg aaaaggaaat tccaacgatc agagcgccgc ttttcaatgt cctgcacact
     1381 acgatcgcca ctgactcttc catagtcctt gccagtcaaa ccaaatgact tgtcaaactt
     1441 cttgaagagc tcgtacagag tgaattgcga tggcgagttg tatgggttgt agtgcttcaa
     1501 gagcgtcagg cccatcatga ggttcgacat ccacttgcca cgtgctgcgt ccgtaatctt
     1561 ctgcatgtct ttgacaagac ccggaatatt caagaactcc ggcactggac gcatctcttt
     1621 gttttccttg tcgatcatca ctgcggttcc gacaccacaa ttcgggtgac aaccacatga
     1681 aacctggccc cactcggctt gaggtccgtg tacaagatca gcaaagtctg cgaaagctcc
     1741 catcagtgat agcgggaacc aatcgcgagt tggttcagtg ataccaacct gattcttgac
     1801 gtcgtgcgcc aggtgcgaaa gtgtatatcg ctgctggaga cggcgatgct cggtaatctc
     1861 ttcgtcgcga ccagtgaacg acactggctg gaacgacagg aaagcaatct ttttgggatt
     1921 gtcgagcgcg aaacgaatga ttgaaccaac ctggtcgtt
//
LOCUS       DATCGC010000239         1530 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_237191, whole genome shotgun sequence.
ACCESSION   DATCGC010000239 DATCGC010000000
VERSION     DATCGC010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1530
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_237191"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            265..>1530
                     /locus_tag="VIJ87_02365"
     CDS             265..>1530
                     /locus_tag="VIJ87_02365"
                     /inference="COORDINATES: protein motif:HMM:NF012787.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-like domain-containing protein"
                     /protein_id="HEY5443319.1"
                     /translation="MPIQEKARVRAPEITGGRGWLNTDKPLSIAALRGKFILLDFWTY
                     GCINCIHIIPDLKKLEAKYPNQLVVIGVHSAKFKNEKETENIRRIILRYEIEHPVYND
                     ADFNVWQSYGVRAWPTQVLIDPAGYVVGNASGEGNYDVIDNAIAQLLPEFRKRGELNE
                     QPLSLVLERAKVGDLPLAFPGKIVADPNTDRLFIADSNHNRLVVTKLDGSLIETIGAG
                     DAGAVDGPYDKASFYRPQGMALSGDFLYVADTENHLIRRVNLKSRNVETIAGTGKQTM
                     EYFKQGPARSVALSSPWDLQLVGETLYIAMAGPHQIWKLDLDKNEISTFAGSGREARL
                     DGPLLDAGFAQPSGLATDGKNLYVADSESNIIRAIDLSDGQVRTLVGGDLFEFGDVDA
                     TGNDVRLQHPLGLVSFGNKLLIADTYNHKI"
BASE COUNT          385 a          397 c          399 g          349 t
ORIGIN      
        1 caggcgtcct cgcctgcctt agttgccact gagtaacctg ggacataacg acggcaggcg
       61 aggacgcctg cgatcccaga agagcgctcg cttgaagata agagcgccac taaggtaccg
      121 gtgacagagg aggcaaggct attgacgaaa tccagcgatg actacaaacg atccggcacg
      181 atctccttag tattaatagc cctttcgatg attctcgcgt gttctccact gggagcacag
      241 tctataccca agcgaggctt gctaatgcca attcaagaaa aagcgcgcgt gcgtgcgcca
      301 gaaataaccg gcggccgggg ttggttgaat acggacaaac cattatcgat tgccgcgttg
      361 cgaggaaagt ttattctcct cgacttttgg acttatggct gcatcaactg cattcacata
      421 attcccgatt tgaaaaagct cgaagctaaa taccctaacc aactcgttgt aatcggggtt
      481 cattcagcaa agttcaagaa cgaaaaggaa accgaaaaca ttcggcgcat catcctgcgt
      541 tacgagatcg agcatcctgt ttacaacgat gcggatttca atgtctggca aagttacggc
      601 gtacgcgcct ggcccaccca ggtcttgatc gatccggcgg gttacgtcgt cggcaatgca
      661 tcaggcgagg gaaattacga tgtaatcgac aacgccattg cccaacttct acccgagttt
      721 cgtaaacgcg gtgagttgaa cgaacaacca ctctctctcg tcctggagcg cgccaaggtt
      781 ggggatcttc cgctggcgtt ccccggaaag attgtcgcag acccgaatac cgatcgcctg
      841 ttcatcgctg attcgaatca caaccgtctg gtagttacaa aacttgatgg gtcattgatc
      901 gagacaattg gcgccggcga tgcgggagcc gttgatggcc cttacgacaa agcaagtttc
      961 tacagaccgc agggcatggc tttgtcgggc gactttctct acgttgccga taccgaaaac
     1021 catctgatac gtcgcgtcaa cctgaagagc cggaatgtcg aaaccatcgc cggcacgggc
     1081 aagcaaacga tggagtattt caaacagggt cccgcacgat ccgttgcttt gagttcacca
     1141 tgggatctgc aactggttgg cgaaacactc tatatcgcga tggctggccc acatcaaatt
     1201 tggaagttgg atctcgacaa gaatgaaatt tcgacttttg ccggttcggg tcgtgaagcc
     1261 cgtttggatg gcccacttct cgatgcgggc tttgctcaac cttctggcct ggcgaccgac
     1321 ggcaagaatc tttacgttgc cgatagcgag tcgaacatta tcagggcaat agatctcagc
     1381 gatggacaag tgagaaccct cgtaggcggc gacctgtttg agtttggtga cgttgacgca
     1441 acgggaaatg atgttcgact ccagcatcca ttgggcctgg tgtcgtttgg caacaaatta
     1501 ctaattgccg atacctacaa tcacaagatc
//
LOCUS       DATCGC010000240         2430 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_4819, whole genome shotgun sequence.
ACCESSION   DATCGC010000240 DATCGC010000000
VERSION     DATCGC010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2430)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2430)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2430
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4819"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1009
                     /locus_tag="VIJ87_02370"
     CDS             <1..1009
                     /locus_tag="VIJ87_02370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443320.1"
                     /translation="VVYVPAFRDALNIAALIASTKYVDKAYSRTQIADEVTLVDIANQ
                     KFHYPEGYFALANQEPGEQSLVGSSASDPFAPKIISRAESQKDLVPEASPSPSPAASP
                     STSPSATASPSTLAEANPSASASASPDDKNKKLTPEESQKKLEETAAENNLVIPDETE
                     LNKQVLKDFAKYANDLKEQGKLDLNKPFEVVIEAELDSNGKLKNPRFTKKAGDENLVD
                     VFARMVAALNDSGFLIYLKPISNDNPNATIKFTFKQGETEVLASVESEASSTTSARVL
                     AKALNAALVFGAGSRAGKDEEILMRNTNVTPDGKKILVNFSMPRQGVVDIIKKQLEPG
                     V"
     gene            1143..>2430
                     /locus_tag="VIJ87_02375"
     CDS             1143..>2430
                     /locus_tag="VIJ87_02375"
                     /inference="COORDINATES: protein motif:HMM:NF019156.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443321.1"
                     /translation="MSFDKFLTKIFGSNNQRFLKSIQPIVDQINLLEPSLKALSDDEL
                     RARTAAFKERVQQVVGDTKDKEERKRLEREALDEILPEAFATVREASVRTTGMRHFDV
                     QLIGGIVLHRGMIAEMRTGEGKTLVSTLPAYLNALTGRGGVHVVTVNDYLASRDAEWM
                     GQIHRFLGLEVGCIQNDMDDFERQAAYAADITYGTNNEFGFDYLRDNMKFDLATCVQR
                     GHYFAVVDEVDSILIDEARTPLIISGPSDEATDKYKNADAIIPHLKRGEDVEGKKTGE
                     YVVDEKAHTAVLTEEGVDKAERLLGVGNLYDPSNMELLHCVEQALKAHTLYKLDHQYV
                     VQDGEVIIVDDFTGRLMKGRRWSDGLHQAVEAKEGVVIEKENQTLATITLQNYFRLYE
                     KLSGMTGTAETEAAEFHSTYKLDVIVIPTHMPMVRTD"
BASE COUNT          668 a          583 c          644 g          535 t
ORIGIN      
        1 agttgtctac gttcctgcgt tccgcgatgc gcttaatatc gccgcactga ttgccagtac
       61 aaagtacgta gacaaagcgt acagtcgtac tcaaattgcc gacgaagtta ctttggtcga
      121 tattgccaac cagaagtttc attacccgga agggtacttc gcgttggcga atcaggagcc
      181 tggcgagcaa tcgctggtag gcagttctgc ttcagatcca tttgctccaa aaatcatttc
      241 gcgagctgag tctcaaaagg atttagtgcc ggaagcgagt ccgtcaccga gtccggctgc
      301 gtcgccttca acttcaccga gtgcaacggc atcgccttca actttagctg aggccaatcc
      361 gtcggcgtcg gcgtctgcgt ctcctgacga caagaacaag aaactaacac ccgaagagtc
      421 gcaaaagaaa ctggaagaaa ctgccgcgga gaacaatctt gtaataccgg atgagactga
      481 actcaacaag caggttctga aagactttgc caagtatgca aatgatctga aggagcaggg
      541 taagctggat ctgaataagc cgtttgaagt tgtaatcgag gccgaactgg attcaaacgg
      601 caagctaaag aatccccgct tcacgaaaaa ggctggtgat gaaaatctcg ttgacgtgtt
      661 tgcccgaatg gttgcggctc tgaacgatag tgggtttctg atttatctaa agccgattag
      721 caacgacaat ccgaacgcaa cgatcaagtt cacgttcaag cagggtgaaa ccgaagtgct
      781 ggcttcagtt gaatcggaag cttcgtcaac aacaagtgct cgggtgttgg caaaagcatt
      841 gaacgcggcg cttgtgttcg gtgcaggttc gagagccggt aaggacgaag aaattctgat
      901 gagaaatacg aatgtgacac ccgacggaaa gaaaatattg gtgaatttct ccatgccgcg
      961 ccagggtgtc gtcgatataa tcaagaaaca gttggagcct ggagtctagc gtgggtccaa
     1021 ttcggactac ctgccaagtc gcttgcttgc tcgcctaaag ccagtcaact aaaatccaaa
     1081 cttgtcgaaa gtggattgat attcacagtt agcaaccaat tgcgtggagc acagtattag
     1141 acatgagttt cgataaattc ctgacgaaga tatttggcag caacaatcaa cgtttcttga
     1201 agtctattca gccgattgtc gaccagatca acttgcttga gccgtcgctc aaagcgcttt
     1261 cagatgatga actgcgggcg cgtaccgcgg cttttaagga gcgggtgcag caggtcgtag
     1321 gcgacacaaa agacaaagag gaacgaaagc gcctggaacg agaggccctc gatgaaatcc
     1381 ttccggaagc atttgcgaca gtgcgtgaag cgagcgtgcg aacaaccggg atgcgtcact
     1441 tcgatgtcca gctcatcgga ggaattgttc ttcaccgcgg aatgatcgct gagatgcgca
     1501 cgggcgaagg caagacgctg gtgtcaactt tgcccgcgta tttgaatgca ctgactggtc
     1561 gtggcggcgt ccacgtcgta accgtgaacg actacctcgc ttcccgcgac gctgaatgga
     1621 tgggtcaaat tcaccgtttc ctcgggcttg aagtcggttg tattcaaaac gacatggacg
     1681 acttcgagcg acaagctgcg tacgcagccg acatcaccta cggaacaaac aacgagtttg
     1741 gcttcgacta cttgcgcgac aatatgaagt ttgaccttgc tacctgcgtg caacgtggtc
     1801 actacttcgc ggtggtagat gaagttgatt cgatcctgat cgacgaagcg cgaacaccgc
     1861 tgatcatttc cggaccttca gacgaagcaa ccgacaagta caaaaacgcc gacgcgatca
     1921 ttccgcactt gaagcgcggc gaggatgttg aaggtaaaaa gacgggcgaa tacgttgtcg
     1981 atgaaaaagc gcatacggct gtgctgactg aagaaggcgt tgataaagca gaacgtctat
     2041 taggcgttgg caatctttac gatccttcaa acatggaatt gcttcactgc gtggaacaag
     2101 cgttgaaagc acacacgctt tacaaacttg atcaccagta tgtggttcaa gacggcgaag
     2161 taatcatcgt cgacgacttt accggacgct tgatgaaagg gcgtcgttgg tctgacggtc
     2221 tgcaccaggc agttgaagcc aaggaaggcg tcgtgattga gaaagaaaat cagacgctcg
     2281 ccacaatcac gctgcaaaac tatttccgcc tctacgaaaa actgtcggga atgaccggta
     2341 ctgcggaaac agaggcggct gaattccact cgacttacaa actcgacgtc atagtgatcc
     2401 cgacacacat gccaatggtt cgtaccgact
//
LOCUS       DATCGC010000241         1308 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_302896, whole genome shotgun sequence.
ACCESSION   DATCGC010000241 DATCGC010000000
VERSION     DATCGC010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1308)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1308)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1308
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_302896"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..807
                     /locus_tag="VIJ87_02380"
     CDS             <1..807
                     /locus_tag="VIJ87_02380"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEY5443322.1"
                     /translation="IEFIEGSVADLQLMNRALEGAEVVFHEAAIPSVPRSVENPTQTH
                     IASVDGTFNLLLAAREQKVRRIVYAASSSAYGDQPTLPKVEDMSPDPLSPYAVAKLVG
                     EYYCQVFTRVYGLETVSLRYFNVFGPRQDPGSQYSGVVSRFISSLCSNESPVIFGDGE
                     QSRDFTFIDNVVSANLKAATSSQGAGKVLNVAIGERITLNELLAELKDLIGKPDVKVD
                     YREARVGDVRHSLADISRAREFLGFEPTVGLREGLQRTIDWWKTSRYATA"
     gene            complement(804..>1308)
                     /locus_tag="VIJ87_02385"
     CDS             complement(804..>1308)
                     /locus_tag="VIJ87_02385"
                     /EC_number="5.3.1.23"
                     /inference="COORDINATES: protein motif:HMM:TIGR00524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="S-methyl-5-thioribose-1-phosphate isomerase"
                     /protein_id="HEY5443323.1"
                     /translation="ADETRPFLQGLRLTAWELAKDNIPVTVITDNMAGHVMKSGKVDV
                     VVVGADRIAANGDTANKIGTYMVAVLAKEHGIPFYVAAPMTTLDLTLSTGAEIPIEER
                     DRREITHIKDYQLAPDGIDVHNPAFDVTPNQLITAIITDRGVARAPFVESLKSLAEIK
                     EVKEAAG"
BASE COUNT          301 a          326 c          329 g          352 t
ORIGIN      
        1 attgagttta ttgaaggcag tgttgcagac cttcaattaa tgaatcgtgc cctggaaggt
       61 gccgaagtcg tttttcatga agcagcgatt ccgtccgtgc ctcgttcggt ggagaacccc
      121 actcaaacac acatagcgtc cgttgacggt actttcaact tgttgcttgc agctcgtgaa
      181 caaaaggtac gtcgcattgt ttatgccgct tccagttcag cttatggaga tcagccgaca
      241 ctacccaagg ttgaggatat gtcgcccgat cctttatcgc catatgcggt ggcaaaactt
      301 gtcggcgaat attattgcca ggtcttcact cgagtttatg gactcgaaac ggtctcgctt
      361 cgttacttca atgtctttgg tcccaggcag gatccaggtt cgcaatactc gggtgtggta
      421 tcgcggttta ttagttctct ctgttcgaac gaaagtcctg tgatctttgg cgacggtgag
      481 cagtcgagag acttcacatt tatcgacaac gttgtttccg ctaacctgaa ggctgccact
      541 tcgagtcaag gtgcagggaa agtcctgaac gtcgcaattg gtgagcgaat tacgctcaat
      601 gagctgttgg ctgaactaaa agacttgatt ggaaagccgg acgtaaaagt tgactatcgc
      661 gaggcacgag tcggtgatgt tcggcacagt ctcgccgata tatcacgagc tcgcgagttc
      721 ctcggtttcg aaccgactgt aggcttacga gaaggactgc aacgaacaat cgactggtgg
      781 aaaaccagtc gttacgcaac tgcctagccc gcagcttctt tcacttcttt aatctccgca
      841 aggcttttca agctttctac aaacggagct ctcgcgacac ctcgatcggt aataatcgca
      901 gtgatcaact gattgggcgt tacatcaaac gctggattgt gcacatcgat gccatccggc
      961 gcgagttgat aatccttgat gtgggtgatt tctctgcggt cacgttcttc aattgggatc
     1021 tccgcgccag tggaaagagt aaggtccaac gttgtcatcg gggccgccac gtaaaaagga
     1081 attccgtgtt cctttgccag caccgcaacc atataggtgc caatcttgtt agcggtgtcg
     1141 ccgtttgcag cgatgcgatc cgcacctact actacaacat caacctttcc gctcttcatc
     1201 acgtgaccgg ccatgttatc agtgattaca gtgaccggaa tattgtcctt cgcaagttcc
     1261 caggcggtta gtcgtagacc ttggagaaat ggtcttgttt catcagcg
//
LOCUS       DATCGC010000242         1222 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_4845, whole genome shotgun sequence.
ACCESSION   DATCGC010000242 DATCGC010000000
VERSION     DATCGC010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1222)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1222)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1222
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4845"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..449)
                     /locus_tag="VIJ87_02390"
     CDS             complement(<1..449)
                     /locus_tag="VIJ87_02390"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY5443324.1"
                     /translation="MIGKTISHYRIVKELGSGGMGIVYLAEDTLLGRHVAVKTLTTSR
                     ENQQFKMRFLREARAVSALSHQHIAHIYDYGETDDGPYIVMELIKGSTLGDLINSGSL
                     TIPRSIEIVKQVASALSEAHRKGIIHRDIKPSNIAINESGEVKVLDFG"
     gene            complement(504..>1222)
                     /locus_tag="VIJ87_02395"
     CDS             complement(504..>1222)
                     /locus_tag="VIJ87_02395"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5443325.1"
                     /translation="LDESLAEAHTSLAFVRYRYFWDWEEAEQHFKRAIELKSDYATAH
                     QWYSAFLAASGRHEEAIAEARRAHELEPFSLTIYADLVRHLYYARRYDEAIAECQKLI
                     ATDQKFARGHVELGQVFEQKGMNSEAVAEFQKALALSENAVAAMTGLGHAFALSGKRA
                     EALDVIKKLEEMSKKNYVSPYQSAVIYAGLGDKTQALAWLQRARDERFNWIPFIKVDP
                     LFDNLRSDPQFDSLVQNIKP"
BASE COUNT          277 a          317 c          302 g          326 t
ORIGIN      
        1 ccaaagtcga gcaccttaac ttcgccactc tcattgatcg caatgtttga tggcttgata
       61 tcgcgatgga taattccttt gcgatgagct tcgcttagag ctgatgcgac ttgtttgaca
      121 atttctatgg agcgcggaat cgttaaagat ccggaattga tcagatcacc gagagttgac
      181 cctttaatca attccatgac gatgtaaggt ccatcatccg tttcaccgta atcgtaaatg
      241 tgagcgatgt gctggtgaga aagtgctgat actgcgcgcg cctcgcgcag aaaacgcatt
      301 ttgaactgct ggttctctcg cgaggttgtg agtgttttga ctgcgacgtg acggcccagc
      361 agcgtatcct ccgcgaggta gacaatgccc attccgcctg agccaagctc tttaacgata
      421 cgatagtgcg aaattgtttt gccgatcatc ggttggactt gaaaacatcc acccactgcc
      481 gcgggtggga tttcgacttc ccatcaaggc tttatgtttt gcactagcga gtcgaattgc
      541 ggatccgatc tcaagttatc gaacaaagga tcgaccttga tgaaaggaat ccagttgaat
      601 cgttcatcac gcgctcgttg caaccaggcg agtgcttgag tcttatcacc gagccccgcg
      661 tagatcactg ctgattgata gggtgagaca tagttcttct ttgacatctc ttccagcttt
      721 ttgatcacat ccaatgcctc ggctcgcttt cccgaaagcg cgaaggcgtg acccagtcca
      781 gtcatagctg ctaccgcgtt ttcagatagc gcaagcgcct tttgaaattc ggcgaccgct
      841 tccgagttca tgcctttctg ctcgaaaacc tgacccaact cgacgtgtcc ccgggcgaac
      901 ttctggtccg ttgcgatcaa cttttgacat tcggcaatcg cttcgtcgta gcggcgtgcg
      961 taatagagat gtcgcaccag gtccgcgtag atcgttaacg aaaagggttc cagttcatgt
     1021 gcgcgccgcg cttcagcaat ggcttcttca tgtcgaccag aagctgccag aaaagcggag
     1081 taccattgat gtgctgtggc atagtctgac tttagttcaa tcgctcgttt gaagtgttgc
     1141 tcagcctctt cccaatccca gaagtagcga tacctgacaa acgcgagtga cgtgtgtgct
     1201 tcagccaacg actcatccag tt
//
LOCUS       DATCGC010000243         1743 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_302923, whole genome shotgun sequence.
ACCESSION   DATCGC010000243 DATCGC010000000
VERSION     DATCGC010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1743)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1743)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1743
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_302923"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1336)
                     /locus_tag="VIJ87_02400"
     CDS             complement(<1..1336)
                     /locus_tag="VIJ87_02400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443326.1"
                     /translation="MSRITDPRLNENETEEQKRLNQACETGIPWKKWGPYLSERQWGT
                     VREDYSKDGNAWDYFTHDQARSRAYRWGEDGLAGISDDKQQLCFAVALWNGRDPILKE
                     RLFGLTNSEGNHGEDVKEYYFYVDSTPTHSYMKYLYKYPHAEFPYKDLIETNRRRSRE
                     DFEYELLDTGVFEEDRYFDVFVEYAKADPEDVLIRITVHNRGPEAATIHLLPTLWFRN
                     TWSSGDTTKPVLGMVKEGAIVASHPVLGERTLSCDATPELLFTENESNLLRLWGQPNP
                     SPYVKDAFHNCVISGDHDAVDPSHTGTKAAAHYVLDVPAKDSKVVRLRLSEKAPADPF
                     ATFDTTFDVRLKDANDFYDRITPASLSEDERRVHRQALAGMLWSKQYYYFDLDRWLEE
                     HGSHPLKGTGKATCRNAEWFHMLNNDIISMPDKWEYPWYAAWDLAFHTICLSL"
     gene            complement(1401..>1743)
                     /locus_tag="VIJ87_02405"
     CDS             complement(1401..>1743)
                     /locus_tag="VIJ87_02405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443327.1"
                     /translation="KSVRDSAFHGGDWTLCARSGWPDNSTFQNLVAWSWQSGNDKHYL
                     IVVNLSDHYSQARVQLSWPELRDSTWSLTDSLSGFNCVRDGNEMLSSGLYVELGPWGY
                     HLLRCEVNTHN"
BASE COUNT          376 a          471 c          456 g          440 t
ORIGIN      
        1 ccagtgacag gcaaatcgtg tgaaatgcca ggtcccatgc ggcataccag gggtactccc
       61 acttgtccgg catcgaaatg atgtcgttgt tgagcatgtg gaaccactct gcattgcgac
      121 acgttgcctt gccagttccc ttaaggggat gagaaccatg ctcctcgagc cagcggtcca
      181 gatcgaagta gtagtactgt ttgctccaca acattcctgc tagtgcctgg cggtgaacgc
      241 ggcgctcgtc ctcgctcaac gacgctggag tgatccgatc atagaaatcg tttgcgtcct
      301 tcagtcgaac gtcaaacgtc gtgtcaaagg ttgcgaaggg atcggccgga gctttttcgc
      361 tcaggcgcaa acgcacaacc ttactgtcct tggctggcac atccaaaacg taatgggcgg
      421 cggccttggt accggtatgc gacggatcca ctgcatcatg atcgcccgag atcacgcagt
      481 tatggaaggc gtccttaaca taaggtgagg gattcggttg cccccagagt cgtaacagat
      541 tggattcatt ctcagtgaat agaagttccg gtgttgcatc gcaagagagc gttctctcac
      601 cgaggacagg gtgcgaggca acaatcgccc cttccttaac catgcccaac acaggtttgg
      661 ttgtatctcc agacgaccat gtgttgcgga accagagtgt gggtagcaag tgaattgtcg
      721 cggcttccgg tccacgattg tgcactgtga tccggatcag aacgtcttcg ggatccgcct
      781 tggcatattc aacgaagacg tcgaaatacc ggtcttcttc aaatacaccc gtatccagga
      841 gctcgtattc gaagtcttcg cgtgatcggc ggcggttcgt ctcgatcagg tctttatatg
      901 ggaactccgc gtgaggatac ttgtacagat acttcatgta ggagtgagtt ggggtgctgt
      961 ctacatagaa gtagtattcc tttacatctt cgccgtgatt accctcgctg tttgtcaagc
     1021 caaaaaggcg ctccttgagg atgggatcgc ggccattcca aagagcgacc gcgaagcaaa
     1081 gttgctgctt atcgtcgctt atgccggcga gaccgtcttc tccccaccga taagcccgcg
     1141 atcgtgcctg atcatgagtg aagtagtccc aggcattccc atctttgctg taatcctcac
     1201 gaactgtgcc ccactgcctt tcgctgagat atggtcccca tttcttccag ggaatgcctg
     1261 tctcgcatgc ttgattaagg cgtttctgtt cctctgtttc attttcattc agccgaggat
     1321 cggtaattcg gctcatcgct cgtctctcct tttggctgga agttggttgc ggattctgtt
     1381 tcaaaccagc cgtcgcgggg tcagttatgg gtgttcactt cgcaccgaag caggtgatac
     1441 ccccaagggc ctagctccac atacagcccg gatgacagca tttcatttcc gtctctcacg
     1501 caattgaaac cggatagcga gtcggttagc gaccatgtgc tatcgcgcaa ttcgggccat
     1561 gagagttgca cccgggcctg actgtagtga tcgctcagat ttacaacgat caggtaatgt
     1621 ttgtcgttac cgctctgcca gctccaagcc accaggtttt gaaacgtcga attatcgggc
     1681 cagccagatc ttgcacacaa ggtccagtca ccgccgtgaa atgcggaatc gcgaacactc
     1741 ttt
//
LOCUS       DATCGC010000244         1203 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_37228, whole genome shotgun sequence.
ACCESSION   DATCGC010000244 DATCGC010000000
VERSION     DATCGC010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1203)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1203)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1203
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37228"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            23..>1203
                     /locus_tag="VIJ87_02410"
     rRNA            23..>1203
                     /locus_tag="VIJ87_02410"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          327 a          274 c          376 g          226 t
ORIGIN      
        1 gatttgcgag cgagcgaaga cacactcaat tacgaaggac cttaagcgga gggctcggaa
       61 tgtgtgacgg cgtgcctttt gcataatgat ccggcgactt acggttgaca gcaaggttaa
      121 gccgttctgc ggcggagccg aagcgaaagc gagtctgaaa tgggcgtcaa gtccagggcg
      181 gtagacgcga aaccacgtga actacgcatg gccaggttga agtgggggta acaccccatg
      241 gaggaccgaa cccactagtg ttgaaaaact aagggatgag ctgtgtggag gattgaaagt
      301 atcatcaaac gtggagatag ctcgttctct ccgaaataac tttagggtta ccgtcgccaa
      361 gtcatccatg ggggtagagc gactgaattc gaacgggggc ctacccggct acccgtcgga
      421 accaaactcc gaataccatg tattagcagt ggcagataga ctgtggggga taagcttcat
      481 agtcgagagg ggaacaaccc agatcgcctg ctaaggtccc taaatcacgc tcagtgcgaa
      541 aggaagttgg attcctgaga cagccaggat gttggcttag aagcagccac catttcaaaa
      601 gtgcgtaata gcttactggt cgaggagtcc tgcgccgata atgaacggga ctaagcgtga
      661 taccgaagca gcggattgcg taagcaatgg taggagagcg ttgccacagc ggtgaagcga
      721 tacgaataac gagtcgtgga gcggtggcaa gtgattatgt cggaacgagt aacgataaaa
      781 cgggtgagaa tcccgttcgc cgaaagccta aggtttcctg gggaaggtaa atccgcccag
      841 ggttagtcgg accctaagac gaggccgtaa ggcgtagtcg atggacggca ggttaatatt
      901 cctgcaccag tctcattgac aatccggatg acgcatcacg gcaaggcgag ccccctgtga
      961 gatgggggtc ccgcaagggc gaggacactt acgattccga agtcctcgga agcacggtca
     1021 agaaaagccc tggggaggtt gaaacagacc gcccgtacta aaactgacac aggtaggcga
     1081 ggagagtatc ctaaggcgct cgagagaact gcggttaagg aactaggcaa tttttccccg
     1141 taacttcggg ataaggggac cctcctcctt cgggagaggg cgcaggaagt gagtctggcg
     1201 act
//
LOCUS       DATCGC010000245         2796 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_469483, whole genome shotgun sequence.
ACCESSION   DATCGC010000245 DATCGC010000000
VERSION     DATCGC010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2796)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2796)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2796
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_469483"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..118
                     /locus_tag="VIJ87_02415"
     rRNA            <1..118
                     /locus_tag="VIJ87_02415"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            342..418
                     /locus_tag="VIJ87_02420"
     tRNA            342..418
                     /locus_tag="VIJ87_02420"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:376..378,aa:Ile,seq:gat)
     gene            446..521
                     /locus_tag="VIJ87_02425"
     tRNA            446..521
                     /locus_tag="VIJ87_02425"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:479..481,aa:Ala,seq:tgc)
     gene            896..>2796
                     /locus_tag="VIJ87_02430"
     rRNA            896..>2796
                     /locus_tag="VIJ87_02430"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          698 a          676 c          843 g          579 t
ORIGIN      
        1 tttacctgaa gacggtgcgc taaccgcaag gaggcagccg gccacggtag ggtcagcgac
       61 tggggtgaag tcgtaacaag gtagccgtag gggaacctgc ggctggatca cctcctttct
      121 aaggatgatc cttcagagcc agaagcatcc gcttctctct atcggatttc ttaggaacac
      181 atcggggccg atcagttcag gctgatttgg tcctttggcg ggatttcgcc gtctacgttt
      241 ctctttcttc tcggacgagc ccacgctatt cccaaggtcg ttggagcatc cttttgtgcc
      301 cccggtcatt cgggatatcg cgggcaacga gcgtgtgctc tgggcctgta gctcagttgg
      361 ttagagcgcg cgcttgataa gcgtgaggtc ggaagttcaa atcttcccag gcccaccaat
      421 tcccgcttcg ctggtgccgc aatgcggggc catagctcag ttgggagagc gcctgctttg
      481 caagcaggag gtcgtcggtt cgattccgtc tggctccacc agcggtcaat caattccgac
      541 tctccagctg ctcgtccgtg aaaacatatt cgcgcatgca atgcgtcgcg ttctcgcgtc
      601 gtttgcatgc gcgtgttgtc tgacatcgtg aagaggagat cgttccgagc gaacgtgtga
      661 cggcgataag ccgccaaacg ttccgcgcgc tcctacagat gcattacgtg gtgatgagcc
      721 gcgtgatgcc tcaagtcggc gaagcttgac cgcctcgtcg tcggttcgat cttgaagcaa
      781 actggtcttt aataatcagt gcctggctga acggatcggc gcatcaacgc aaatgttggt
      841 gcgaactgcc gttcggatca cacgccgagt gtgagtgggc attgttaatg agagcgatca
      901 agtgtcgtaa gggcgtttgg cgaatgcctt ggcgctgaga ggcgatgaag gacgtactac
      961 gctgcgataa gccgcgagga gctgcgaaga agctttgatc cgcggatttc cgaatgggga
     1021 aacccacctt cgataacgga attctgacgt tcgtgttcgc aagaatgcgg gcgttggatt
     1081 tccgttatca aaagaaggaa taagactcct gaatcaaata gggggtttta agctaacccg
     1141 gagaactgaa acatctcagt acccggagga aaggacatca accgagactc cgctagtagt
     1201 ggcgagcgaa agcggactag gccagtggta atccagagac aaccggaagc gtttggaaca
     1261 acgcgcctta gtgggtgaca gccccgtacg ggtaacgcga aggattatcc ttgagtaagg
     1321 cgggacacgt gtaatcctgt ctgaacatgg ggggaccacc ctccaagcct aagtactcct
     1381 cagcgaccga tagtgaacaa gtaccgtgag ggaaaggtga aaagcacccc gacgagggga
     1441 gtgaaagaga cctgaaaccg aacgcctaca aacagacgga gcccaagatt cgttctgggt
     1501 gacgtcgtac cttttgtata atgggccagc gacttaattt gacgagcaag cttaagccga
     1561 taggcgtagg cgcagcgaaa gcgagtctga atagggcgat caagttcgtc ggattagacc
     1621 cgaaacctag tgatctagcc atggtcaggt tgaaggtggg gtaacaccta ctggaggacc
     1681 gaaccggtgt ctgttgaaaa agcctcggat gaactgtggc taggggtgaa aggccaacca
     1741 aactgggaaa tagctggttt tccgcgaaag atatttaggt atcgcctcga gcgaatgctt
     1801 tggggggtag agcactggat aggctagggg gactcaccgt cttaccaaac ctaaccaaac
     1861 tccgaatacc caaaagcact actcgggagt cacacggtgg gtgctaacgt ccatcgtgga
     1921 gagggaaaca accctgacca acagctaagg cccccaattc gtggctaagt gtgaaaggat
     1981 gtgggaatcc cataacaacc aggaggttgg cttagaagca gccatccttt aaagaaagcg
     2041 taacagctca ctggtctaaa caaggattcc tgcgccgaaa atgtaacggg gctcaagcca
     2101 cgagccgaag ctttgggtgt gcacgcaagt gcatgcggta gcggaacgtt ccgtaagcct
     2161 gcgaagggag acccgtgagg gctcctggag gtatcggaag tgcgaatgct ggcacgagta
     2221 acgacaaaca gagtgaaaga ctctgtcgcc gaaagtccaa gggttcctgc gtaaagttaa
     2281 tctgcgcagg gttagccggt ccctaaggcg aggccgaaag gcgtagtcga tgggaatgca
     2341 gtcaatattc tgcagccagt gggtagtgac gaattccgta tgttgttctc tcttattgga
     2401 ttgagagggc tgcgaaggag ttccaggaaa tagctcccac atagaccgta ccctaaaccg
     2461 acacaggtgg actggtagag aataccaagg cgcttgagcg aactatgttg aaggaactcg
     2521 gcaatttacc tccgtaactt cgggataagg aggacctctc ggtgggcaac catcaagggg
     2581 tggcacagac cagggggtgg cgactgttta acaaaaacac agggctctgc gaactcggaa
     2641 gaggacgtat agggtctgac gcctgcccgg tgccggaagg ttaagaggag gggtgcaagc
     2701 cttgaatcga agccccggta aacggcggcc gtaactataa cggtcctaag gtagcgaaat
     2761 tccttgtcgg gtaagttccg acctgcacga atggcg
//
LOCUS       DATCGC010000246         1197 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_103386, whole genome shotgun sequence.
ACCESSION   DATCGC010000246 DATCGC010000000
VERSION     DATCGC010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1197)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1197)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1197
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103386"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            159..1013
                     /locus_tag="VIJ87_02435"
     CDS             159..1013
                     /locus_tag="VIJ87_02435"
                     /inference="COORDINATES: protein motif:HMM:NF013252.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443328.1"
                     /translation="MSLDGSFPEWFVPMAATLTQERFTGADWIFERKFDGIRLLAFKN
                     GEDVQLFSRTHHQQNIPSVAQSIAKLPHRQLILDGEITWGRGSVTYHVFDVLWIDGRS
                     LMSVPLDERRGVLAELSLVSPLERVTALDHKTPWELAQQEGWEGVIAKRRDSVYEHRR
                     AKSWLKMKCELRHEFVVGGFTDPQGKRVGLGALLVGHYEGGEFCFAGKIGTGFDTRLL
                     LELRAKLEELEIAKSPFTKAVGLPRLRVHWVKPEIVVQVGFIEWTGHGKLGHPRLLEV
                     KDHPQITP"
BASE COUNT          279 a          280 c          330 g          308 t
ORIGIN      
        1 taaaccgccc ttccttactt gttctgaata aaagcgagga ccatacctca caggctgaag
       61 tctgtggcac ttgcttacta cttttatgct cgctaatctg ccggtgagat tttgaacgct
      121 acccctgtta gcaaagatag aaacatccta gagcatatat gagtttagac ggctccttcc
      181 ccgaatggtt tgtgccgatg gcggcaacgt tgacacagga acgcttcacc ggcgccgact
      241 ggatcttcga gcggaagttt gatgggatca gattgctcgc cttcaagaat ggtgaagacg
      301 tccaactctt ctcgcgtact catcaccagc agaatattcc ttcagtagct caatcaatcg
      361 cgaagcttcc acatagacaa ctgattctgg acggtgaaat tacctggggc cgaggctcag
      421 tcacttatca cgtgtttgat gtgttgtgga tcgacggtcg cagtctgatg tcggttcctc
      481 ttgatgaacg gcgcggcgtg ctggctgagc tgtccctggt gtctccgctt gaacgtgtca
      541 ctgctctaga ccacaaaact ccatgggaac tcgctcaaca agaagggtgg gaaggcgtca
      601 tcgcaaagcg acgtgattcg gtttacgaac atcgtcgcgc caaaagttgg ttgaagatga
      661 aatgcgaact gcgccacgag tttgtcgtgg gtggtttcac agatccgcag ggtaaacgtg
      721 ttggtctggg tgcgttatta gttggtcact acgaaggcgg cgagttttgt ttcgccggaa
      781 agattggaac tggattcgac acgaggttgt tgcttgaact gcgggcgaaa ctggaagaac
      841 ttgaaatagc aaagtcgcct ttcaccaaag ctgttgggct acctcgctta cgtgttcact
      901 gggttaagcc tgagatcgta gttcaggtag gtttcattga atggaccggt catgggaagt
      961 tgggacaccc gcggttgctg gaagtgaaag atcatccgca gattacgcca tagtggcgat
     1021 gaagtcagta ccacagcgcg gtagcgtgtg gctctggact ggtaaagcga ttctcgacat
     1081 tcagagagcc acacgctacc gcgctgtggt actgactcga caaagcagat ttgtttgcgg
     1141 ctctgcgtag tgtgcaaatg atcatgatct cgcatccgga taagattctt tttcctg
//
LOCUS       DATCGC010000247         1337 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_302960, whole genome shotgun sequence.
ACCESSION   DATCGC010000247 DATCGC010000000
VERSION     DATCGC010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1337)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1337)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1337
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_302960"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1337)
                     /locus_tag="VIJ87_02440"
     CDS             complement(<1..>1337)
                     /locus_tag="VIJ87_02440"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEY5443329.1"
                     /translation="HASGIVHRDIKPENVMLRSDGYVKVLDFGLAKLMPSHDERLADP
                     SLSTALNLNTDPAAIVGTVNYMSPEQLRGMKVDGRADIWSLGVVLYEMIARCSPFARL
                     TKSDVIASILREEPPLLATYSNIPTELQRIVAKALRKEREERYQLAKDLMIDLKEVRQ
                     DLELDSKQGRTRSSDARHTAEGPAETDSQKTLALTRKIETAKPTSGVQYFFEEIRHHR
                     TGATILMVVLLLSLVVGLAVWLGGRGSSSKPNTFAVPNVIEVNTTSNVREVAISPDGK
                     YIAIVAEDAGKQSIKIQQPYDASESPAIVEGAEYRGVVFSRDGYSVYYLARDEKGSAL
                     YQVSTLGGAARKLLSSVDTPIALSPDGRDLAFVRRDKEGTVLIAARADGSSERKVAFP
                     PDQFDFSTLQINSGPAWSPDGKVIVCPIKSKGDPMYMEVVAARVDDGSVKTIG"
BASE COUNT          302 a          377 c          329 g          329 t
ORIGIN      
        1 atccgatcgt cttaaccgaa ccatcatcga ctcgtgcggc gactacttcc atatacatcg
       61 gatcgccctt gctctttatc ggacagacaa tcacctttcc atcaggagac caggctggac
      121 cactattaat ttgcaaagta ctaaagtcga attgatctgg agggaaggcc accttgcgct
      181 ctgaactacc atccgccctt gctgcaatca gaactgttcc ttctttgtcc cgacgcacaa
      241 atgccaagtc tcttccatca ggcgaaagtg caattggcgt atcgacacta ctcagaagct
      301 ttctcgcagc accgcctaac gtcgaaacct ggtacagcgc cgagcccttt tcatccctgg
      361 caaggtagta aacagaataa ccatctcgag aaaaaaccac tccccggtat tcagcgccct
      421 ctacgatcgc tggcgattca ctggcatcgt aaggctgctg gattttgatg ctctgcttac
      481 ccgcgtcctc ggccacaatt gcgatgtact tgccatctgg tgaaatcgct acttctctga
      541 cattgctggt tgtgtttact tcgatgacgt tggggactgc gaaggtattt ggcttagagg
      601 aggagcccct tccgcctaac caaactgcca gaccgaccac gagtgacaga agcagcacaa
      661 ccatcaggat agttgcgccc gtccggtggt gtcggatctc ttcaaagaaa tattgaacgc
      721 cggaagttgg ttttgccgtt tcaattttcc tcgttaaggc cagcgttttc tgcgagtcgg
      781 tctcggctgg cccctcggcc gtatgtctgg catccgagct acgagtccgg ccttgcttgg
      841 agtcgagttc taaatcctgc ctgacctctt tgagatcgat cattaggtct ttggccaact
      901 gatagcgttc ttctctctcc tttcgcagcg ctttggcgac gatccgctgc agctcagtcg
      961 gaatatttga gtaggtggcg agcagaggtg gttcctcacg caaaatcgac gcaataacat
     1021 cactcttcgt caaccgggcg aaaggagaac accgggcaat catttcgtag agcacgacac
     1081 caaggctcca tatatcggca cgcccgtcga ccttcatgcc ccgcagttgc tccggtgaca
     1141 tgtaattgac cgttcctacg atcgcggcgg gatcagtatt cagattgagg gccgtcgaca
     1201 aactaggatc ggcaagtcgt tcatcgtgcg agggcattag cttggcgagg ccaaagtcga
     1261 gcactttgac gtatccatcc gaacgcagca tgacgttctc aggtttgatg tcacgatgga
     1321 caatgccaga cgcgtgg
//
LOCUS       DATCGC010000248         1077 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_302961, whole genome shotgun sequence.
ACCESSION   DATCGC010000248 DATCGC010000000
VERSION     DATCGC010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1077)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1077)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1077
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_302961"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1025)
                     /locus_tag="VIJ87_02445"
     CDS             complement(<1..1025)
                     /locus_tag="VIJ87_02445"
                     /inference="COORDINATES: protein motif:HMM:NF019298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443330.1"
                     /translation="MSSFLPNVIVARALKDVSTASVKASNNLQSKVTKGLDRLYLFQH
                     QDGGWGWWKDDKTDPFMTAYVVDGLQLASGAGYPVRTYALQHGRRKIIELLDSGKTEQ
                     NKSIDLEDKAYLVYALVTSKETDPKYLNELYSRRSQLQPYGKALTALALSTSGELVKA
                     RELAADLEKTAIQNDFDAHWESRRRPMLDFVVQNDVEATANGIRAISQLTPQSPLLPK
                     LVRWLVANRSRGYYWETTKDTAFAIFGLSDFLKVSKELQPDYSLEVYLNGEKVIEKRV
                     TASEAAAGQTFTLERKGQSAGNANSVRVVKKGRGALYFGSTLDYFTSEEKIAGKGNAE
                     LSLTREY"
BASE COUNT          227 a          310 c          264 g          276 t
ORIGIN      
        1 aaatactctc gcgtgagcga taattcggca tttcccttcc ccgcaatctt ttcctcagac
       61 gtgaagtaat cgagggttga accaaaatag agagctcccc ggcctttctt tactactctg
      121 actgaatttg catttccggc agattggcct tttcgttcaa gagtgaaggt ttgtccggct
      181 gcggcctctg aagccgtcac gcgcttctcg attactttct cgccgttgag atacacctcg
      241 agcgaataat ccggctgcaa ctccttgctg accttcagaa agtcactcaa gccaaagatc
      301 gcgaacgccg tgtccttggt agtctcccag tagtagcctc gcgatcgatt cgcaacaagc
      361 cacctcacca gctttggcag caacggactc tgaggcgtca gctgcgatat ggcgcggata
      421 ccatttgcag ttgcttcgac atcgttttgc acaacgaaat cgagcatcgg cctgcgcctg
      481 gattcccagt gggcatcgaa atcattctgg attgccgttt tttccagatc ggcagcaagc
      541 tcgcgcgcct tcaccaactc tccagacgtg ctcagcgcga gtgcggtcag ggccttgcca
      601 tagggctgaa gctggctgcg ccttgagtag agttcattga ggtacttcgg atctgtctct
      661 ttgctcgtga caagggcgta aacaagatat gctttgtctt cgagatcaat ggacttattc
      721 tgttccgtct ttccgctatc cagcagctca atgatctttc tccggccgtg ctgcagcgca
      781 taggtcctta ccggataacc tgccccactt gccagctgca acccatcgac cacgtaggcg
      841 gtcatgaagg gatcagtctt gtcgtctttc caccatcccc agcccccgtc ctgatgttgg
      901 aagagataca agcgatcgag cccctttgtg accttacttt gcagattgtt tgaggctttg
      961 acagaagcag tgctcacatc tttgagcgcc cgcgcaacga tcacgtttgg caggaagctc
     1021 gacatggtct gctcagtgca gccgtatgga aagctcgtca gataatccag agcgcca
//
LOCUS       DATCGC010000249         1916 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_403005, whole genome shotgun sequence.
ACCESSION   DATCGC010000249 DATCGC010000000
VERSION     DATCGC010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1916)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1916)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1916
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_403005"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(84..728)
                     /gene="ribA"
                     /locus_tag="VIJ87_02450"
     CDS             complement(84..728)
                     /gene="ribA"
                     /locus_tag="VIJ87_02450"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: protein motif:HMM:NF001591.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003935 - GTP cyclohydrolase II activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HEY5443331.1"
                     /translation="MEQTAIKSCCDEVATGSVERVAVADLPTEWGNFQIAGYRSLISE
                     EEYVVLFKGDMKRDVPTLVRIHSQCLTGDVFGSTKCDCGEQLHTTLQMIQQEGRGAIV
                     YQQQEGRGIGILNKIRAYALQDQGADTVEANVRLGLAVDLRDYRQCAEILFDLGLCKV
                     KVISNNPLKLQALEEAGLEIVERVSIEVDSAENAAGYLRTKKEKMGHLLDLKRD"
     gene            954..>1916
                     /locus_tag="VIJ87_02455"
     CDS             954..>1916
                     /locus_tag="VIJ87_02455"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HEY5443332.1"
                     /translation="MTSERDENDSVTTQLHTDSQIINFPQLERRPVLVSIRGELLATP
                     IPLERDSVTIGRALDADIRLNDSRASRLHAQIVADKTDGSNCARFRVIDLGSTNGTLV
                     NGQVIREAVLNDGDKILVGDHLFRFEMLDEIDQEFQQQIHRLIGHDELTGLLTSKSFF
                     TELRREAARAEEENQPFCVLMMDLDHFKQVNDSYGHMVGSRTLQDIGVIIKAALRSGD
                     VAARFGGEEFAAFLLDADYAQALVAAERVRHAIESHLFSSANLTSGNVDHGFHITISI
                     GIAAFPDDARDVIQLVEMADSALYRAKRSGRNTICAYRPSLAATE"
BASE COUNT          469 a          507 c          457 g          483 t
ORIGIN      
        1 taaacagtaa tcaacggatc ttgattagac gaagaggccg ccacttggcg gcctcttcag
       61 ttttgttcgc ttcaaattga gattcagtct cgtttaagat ccagaagatg tcccatcttc
      121 tctttcttcg tgcgcaggta gccagctgca ttctccgctg aatcaacttc gattgatacc
      181 cgctcaacaa tctctagtcc cgcttcctcc agtgcctgaa gttttaatgg attgtttgaa
      241 attactttta ccttgcacag cccgagatca aaaagaattt cggcacactg acgatagtct
      301 cgcagatcca ccgccaaacc caaccggaca tttgcttcca cagtatcagc accctggtcc
      361 tggagagcat aggcacgaat cttgtttaga atgccaatcc ctcgtccttc ttgttgctgg
      421 tacacaattg ctccgcgtcc ctcttgctga atcatttgca gcgttgtgtg aagctgctct
      481 ccacagtcgc acttggtaga gccaaaaacg tcgccggtca gacattgaga gtgaatgcgt
      541 acaagcgttg gaacgtcccg tttcatatca cccttaaaca agacgacgta ttcctcttcg
      601 ctaatcaagg atctataccc ggcgatctga aagttgcccc attcagtcgg aagatcggcg
      661 accgcaactc gttctactga acctgtagcc acttcgtcgc aacaagattt gattgctgtt
      721 tgctccaact taaataactc ccttatgccc aaaagcttta tcggtcaaag tcgagaggcc
      781 tgattataaa agtatcggac gaagggtcac aagtcacggt cctatacaaa cccgcaagat
      841 caggtcctcc agagatgttt cttgctgcac tctgatcggc gagctaagat acttcctacg
      901 taattgcctt tgaatcgaaa gaagcaattc taagcaatct cgagagcccc aaaatgacga
      961 gcgaacgcga cgaaaacgac tcggtcacta cccaactgca cactgattcg cagattatca
     1021 attttccaca gttggaacgt cgaccagtgc tggtttcaat caggggcgag ctcttagcta
     1081 cgccaatacc gctagaacga gactccgtca ctattgggcg ggcactcgat gcagatattc
     1141 gcctgaacga ctcaagggca tcccgcttgc acgctcaaat cgtcgccgac aagactgacg
     1201 gctcgaactg tgccagattc cgtgtcatag atcttggttc gaccaacggt accctggtca
     1261 atggtcaagt cattcgagag gccgtgttga acgacggcga caagatactc gtcggtgatc
     1321 atttgtttcg tttcgaaatg ctcgatgaga ttgatcagga gtttcaacaa cagatccatc
     1381 gactcatcgg gcacgatgag ttgacgggct tactcacgag caagtcgttc tttacagagc
     1441 tgaggcgtga ggcggcgcgc gcagaagagg aaaaccaacc gttttgcgtt ttgatgatgg
     1501 acctggatca cttcaaacaa gttaatgata gttatggtca catggtgggg agccggactc
     1561 ttcaagacat aggagtaatc atcaaggcgg cgttgcgctc cggtgatgtg gccgctcgat
     1621 tcggtggtga agagtttgct gctttcctgc tggacgccga ctatgcgcag gctctcgtgg
     1681 ctgctgagcg tgtccgacac gccattgagt cacatttgtt ctcatccgca aatctgacgt
     1741 caggcaacgt tgaccatggt ttccatatca ccataagtat tggtatcgcc gctttccctg
     1801 acgacgccag ggatgtcatt cagctcgtcg agatggccga ttctgctctg taccgcgcga
     1861 agagaagcgg gcggaatact atctgcgcgt atcgaccttc attggccgcc actgag
//
LOCUS       DATCGC010000250         1168 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_436264, whole genome shotgun sequence.
ACCESSION   DATCGC010000250 DATCGC010000000
VERSION     DATCGC010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1168)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1168)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1168
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_436264"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..228
                     /locus_tag="VIJ87_02460"
     CDS             <1..228
                     /locus_tag="VIJ87_02460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443333.1"
                     /translation="LADLQQLQTQRYVSPYTVAAIYTGLGDQEQAFNWLEKAVEERDI
                     WLMNLKVDPVFAKLRSNRKFTDLLARIRLRP"
     gene            368..>1168
                     /locus_tag="VIJ87_02465"
     CDS             368..>1168
                     /locus_tag="VIJ87_02465"
                     /inference="COORDINATES: protein motif:HMM:NF013706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEY5443334.1"
                     /translation="MKLYRTNAGAVIQDGSNAFLYRTDWDKLINSRELLNSLRSLVDS
                     GTLPIADENFTAQLLAPIGNQEVWAAGVTYYRSRTARMAESHDAGADNFYDRVYSAER
                     PELFFKATAHRVAGPGQTVRIRRDSRWNVPEPELALVITSDGKIVGYTIGNDMSSRDI
                     EGENPLYLPQAKVYDRSCALGPCILVAEKPPEASTEIKLQIAREGKPAFEGTTTLAQL
                     KRTPETLVEFLYRDNSFPEGCFLLTGTGIVPGDDFTLQSGDEIRITIDS"
BASE COUNT          298 a          287 c          300 g          283 t
ORIGIN      
        1 ctggcggacc ttcagcagtt gcagactcaa cgttacgtct cgccctatac cgtggcagca
       61 atctacaccg gactgggtga tcaggagcaa gcgttcaact ggttggagaa agccgttgaa
      121 gaacgcgaca tctggctaat gaacctcaag gtcgatccag tttttgcgaa gctccgttca
      181 aaccgaaagt tcaccgacct gctcgcgcga atccgcctgc gaccgtaaga agcttagcca
      241 cagatttttc agataaacac agatttcaga aggcagtaag tagttattgg ccaaagcgta
      301 attgaactgc ctttattcct aatctgtggt catctgttcg atttgtggct cttgaggaaa
      361 ccaacaattg aaactctatc gaaccaatgc cggcgccgtt attcaagacg gtagcaacgc
      421 ttttctctac agaaccgatt gggacaaact catcaattct cgtgaactct taaattcact
      481 gaggtcattg gtcgattcgg gtaccttgcc gattgctgat gagaacttca cggctcaatt
      541 gcttgctccg atcggcaacc aggaagtgtg ggctgcggga gtaacttact accgcagtcg
      601 taccgcacga atggccgagt ctcacgacgc aggagcggat aacttctatg atcgagttta
      661 ttctgcggaa cgtcctgagc tgtttttcaa ggcgactgcg catcgagtag ccggcccggg
      721 acaaacagtt cgcattagac gcgactcacg ctggaacgtt cctgaacccg aactcgctct
      781 ggtgattacg agtgatggaa agattgttgg ctacacaatc gggaacgata tgagttcgcg
      841 agatatcgaa ggcgagaatc cgctctatct tccgcaggcc aaggtttatg atcgaagttg
      901 tgcgctgggc ccctgcatat tggtagcaga gaaacctccg gaagcctcaa ccgaaattaa
      961 gttgcagatt gcaagagagg ggaagccggc gtttgaagga accacgacgt tggcacaact
     1021 aaagagaact cctgaaacgc ttgtagagtt tctctatcgc gacaattcgt ttccggaagg
     1081 ttgttttctt ttgactggaa ctggcatcgt cccgggagat gatttcacgt tgcaatccgg
     1141 tgatgagata cgcatcacca tcgactcg
//
LOCUS       DATCGC010000251         2398 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_136725, whole genome shotgun sequence.
ACCESSION   DATCGC010000251 DATCGC010000000
VERSION     DATCGC010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2398)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2398)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2398
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136725"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(189..1406)
                     /locus_tag="VIJ87_02470"
     CDS             complement(189..1406)
                     /locus_tag="VIJ87_02470"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEY5443335.1"
                     /translation="MKALIPTRLRSIDALRGIAALGVVFYHAVDKTNNVVPSGLLKYP
                     VRLLQYASSFGYIGVFLFFVISGFCIHLQWARAQASGQQSQIEFGAFWKRRLRRLYPP
                     YVITLVLFFTITALSVGLNVTRFFIYDTVLHLLMLHNLDPRTCYSINGVFWTLAIEEQ
                     LYLAYFLLLFLRRRWGWGPTLVLCLVARAGWMIFSHVVWLKTGIGVPVPEAAASHWFT
                     WALGAIAVEAWFGLVKLPKWTSNLTLGAVLIVAASALSNLLPGISKDTIWHDFSWFVM
                     HPMWGIGFFIVVNRTVLAEDGWLRNFRLPSVISLFATLGVFSYSIYLTHELTIMQSWR
                     WTLPNLWQIQNVFVITIPATILFAWVFFWFCERPFMIRKVTRVEHGPEPNRESHPTIP
                     PLNVAIESQAVSD"
     gene            complement(1497..>2398)
                     /locus_tag="VIJ87_02475"
     CDS             complement(1497..>2398)
                     /locus_tag="VIJ87_02475"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY5443336.1"
                     /translation="AKSDANVLIVGESGTGKELIANAIHYQSLRQKKPFIKVNCAALP
                     KELIESELFGHTKGAFTGAHADKEGLVQHAAGGSLLLDEIAEMPVELQPKLLRVLQER
                     SYRKIGSEKTYAVDFRLICSTNRPPADAIRDGLLRDDLFYRISTITIHVPPLRERNED
                     IQLLTEHFLQMYAQKYERQITSVSQAAYQRLFGHAWPGNVRELQNVIERAVLLAKDTK
                     IEPIDLPFDNGTLPEGSPVNSDWDFPPNMTLEDIEKLVIERTLQRTNGNKQAAANLLG
                     IYRPRLYSKIRKYNIDVNARASA"
BASE COUNT          616 a          598 c          621 g          563 t
ORIGIN      
        1 aagctgaagc ttggggagaa tgagaggggg cgcactctgg ctgcgaacgt gacgactcca
       61 gacttttgca agagacgctt cagctagtcg ttgccgttgg tagctgagtc actcgcattc
      121 agagccacac gctaccgcga agtggtattg actccaatgc cactccaaaa ctcgggttgt
      181 accggagtct aatcagaaac agcttgagac tcgatggcta cattcagggg cggaattgtt
      241 ggatggcttt cgcgatttgg ttcgggaccg tgttcgactc gagtcacctt ccgaatcatg
      301 aacggtctct cacagaacca gaagaatacc catgcgaata ggattgtcgc aggaatcgtg
      361 atcacgaaaa cgttttggat ctgccagagg tttggcagtg tccaacgcca ggattgcatg
      421 atcgtcaact cgtgcgtcag gtagattgaa taagaaaaca ctcccagtgt cgcaaagagt
      481 gagatcacag acggtaatct aaagtttcgc agccatccgt cttcggcgag cactgtccga
      541 tttacaacaa taaagaaacc gatcccccac atcggatgca ttacaaacca actgaaatcg
      601 tgccagattg tgtctttcga gattccaggc aacaggttgg agagtgcgga cgctgcaacg
      661 attagcacgg ctcccaatgt caggttgctc gtccacttcg gtagttttac cagtccaaac
      721 cacgcttcaa ccgcgatagc gccgagcgcc cacgtgaacc agtgcgacgc ggccgcctcc
      781 ggaaccggaa ctccaatccc cgtcttgagc caaacaacgt gactaaaaat catccagccc
      841 gctctagcca ccaaacaaag aaccagcgtc ggtccccagc cccaacgtct tctcagaaac
      901 agcaacagga agtaggcaag atagagttgt tcttcaatcg ctaaggtcca aaagacgccg
      961 ttgatgctgt agcaagttct tggatcaagg ttgtgcagca tcaacaggtg gagaaccgtg
     1021 tcgtagataa aaaagcgagt gacgttgagg ccgacggaca aagccgtaat cgtgaagaag
     1081 agaacaaggg taattacata aggtgggtat agcctgcgca gccgtctctt ccagaaggcg
     1141 ccaaactcaa tttgggattg ttgtccgcta gcttgagcgc gagcccactg aagatgaatg
     1201 cagaagccgg agattacgaa gaacaggaaa acgccgatat aaccaaatga gctcgcgtac
     1261 tgaagtagtc gaacgggata tttcaacagg ccgctcggca ccacattgtt cgtcttgtcg
     1321 accgcatggt agaaaacgac accgagcgcc gcaattccgc gtagcgcatc gatgcttctc
     1381 aaacgcgttg ggattagtgc tttcatccaa cgagggcaac tacccgaata ctcgtcaaaa
     1441 agaaagtggc ccgaaaaata aagggccact acttttgaac gacgtcaccc aggacatcaa
     1501 gctgacgccc gtgcgttgac gtcgatgttg tatttccgaa tcttgctgta gaggcgtggg
     1561 cggtagatgc ccaacagatt tgcggcagcc tgcttgttgc cgttggttcg ttgcagcgtc
     1621 cgctcgataa ccagtttttc gatgtcttcc aaagtcatgt ttggcgggaa gtcccaatca
     1681 ctgttcactg gagagccttc gggaagggtg ccattgtcga acggcaggtc aatgggttca
     1741 atcttagtat ccttcgcaag caagactgct cgttcgatta cattttgtag ttctcgtaca
     1801 ttgccgggcc aagcgtgtcc aaagagacgt tggtacgccg cctgggagac gctggttatt
     1861 tggcgctcat atttctgtgc gtacatctga aggaaatgct ccgtcaagag ttggatatct
     1921 tcgtttcgtt cgcgtagtgg cggaacatgt atcgtgatcg tggatatgcg ataaaagaga
     1981 tcgtcacgca ataatccatc acgaatagca tctgccggcg gacgattcgt cgaacagatc
     2041 agtcgaaaat cgacggcgta ggtcttttct gaaccgatct ttcggtaact acgttcttga
     2101 agcacgcgca atagctttgg ctgcagttcg accggcattt ccgcaatttc atcaaggagc
     2161 agcgagccgc ccgctgcgtg ttggaccaat ccctctttat ctgcatgagc gccagtaaac
     2221 gcacctttcg tatgtccaaa caattctgac tcgataagtt ctttcggtag agcagcgcag
     2281 tttactttga tgaatggttt cttttgccgg agagattgat agtgaattgc attggcgatc
     2341 agttctttgc cggtacctga ttctccgaca attagaacgt ttgcatctga ctttgcaa
//
LOCUS       DATCGC010000252         1548 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_403037, whole genome shotgun sequence.
ACCESSION   DATCGC010000252 DATCGC010000000
VERSION     DATCGC010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1548)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1548)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1548
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_403037"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1233)
                     /locus_tag="VIJ87_02480"
     CDS             complement(<1..1233)
                     /locus_tag="VIJ87_02480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443337.1"
                     /translation="MKQAFWFLCALTMSVFAGGALYSVEAQAVSPTPDPFAVQLTSAP
                     ASSFLTFGNDMTANGRFVVFTSDADVATEKSPTRNNADGNREIFLADYAQRRIFQITN
                     TKNVLNPVVAPSPTPTPSPTPTPSPTPSPQPTPEDLSLVKIHIINNGPAISMAPTLVS
                     GQRVFTIVFSSNAPNPGNFDGTEGTLATDGNTELWMFRLPAVSDVNLTLGTDLPFQDL
                     AAGTFTQITNTPASRLPTPGSTSVAPFFADDNREAAINDNGLVIAFISTRDLVPGGNN
                     ECPRPVPTPTPSPLPSPVPGGNPELFFYNVVSGTIIQGTNTKDAVCGIGLITQTNPSL
                     SANGSVVSFFSTSNLGGSNSDGNGEVLMANFSGSALSNIRQVTKTSDPTSPSVNLLSP
                     GRRLSRDGAYIAFESRATD"
     gene            1449..>1548
                     /locus_tag="VIJ87_02485"
     CDS             1449..>1548
                     /locus_tag="VIJ87_02485"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HEY5443338.1"
                     /translation="MTKKALITGITGQDGSYLAEYLLSLGYEVHGIV"
BASE COUNT          394 a          365 c          432 g          357 t
ORIGIN      
        1 atcagtggcc cgtgattcaa aagcgatata cgctccgtct cgacttaagc gacgaccggg
       61 acttagcaga ttaacgctcg gcgaagttgg atcgctcgtc ttcgtcacct gtctgatatt
      121 cgacagagca gaaccgctaa agttcgccat caaaacttcg ccattcccgt cgctgttact
      181 gccccctaaa tttgaggtgg aaaaaaacga cactacggat ccgttggcag agagggaggg
      241 gttcgtttga gtgatcaacc cgataccaca aacagcatct tttgtgttcg ttccctgaat
      301 aatggtgcct gacacaacat tgtagaagaa cagttcaggg tttccaccgg ggactgggct
      361 tggaagcgga cttggagttg gagtcggtac tggtctcgga cattcattgt ttccacctgg
      421 cacaagatcg cgggtcgaaa taaaagcaat gacgagtccg ttgtcgttaa tcgcggcctc
      481 tcgattgtcg tcggcaaaaa acggagcaac gctcgtggaa cccggagtcg gaaggcgact
      541 ggccggcgta tttgtaatct gggtaaaagt gccggcagct aaatcctgaa atggaagatc
      601 ggttccaagc gtcaggttca catcagaaac agccgggagt cgaaacatcc acaactcggt
      661 attgccatcg gtcgcaagtg ttccttcggt gccatcgaag ttgccgggat ttggagcatt
      721 cgaactgaaa acaatcgtaa aaacacgctg acccgaaacc agagtcggag ccatcgagat
      781 cgccggtcca ttgttgatga tatgaatctt aaccagactc aaatcttccg gagttggttg
      841 tggacttggg gtcggagacg gcgtgggtgt cggactcggc gtcggagtag ggcttggagc
      901 cacaactgga ttgagaacgt tcttggtatt cgtgatctgg aaaattcgtc gctgggcgta
      961 gtctgcaaga aagatttcgc gattgccgtc tgcgttgttg cgagttggag acttttcagt
     1021 ggcgacatca gcgtcagacg tgaacacaac gaagcgaccg ttcgctgtca tgtcgttccc
     1081 gaatgtaaga aaagaactag ctggcgccga agttagctga actgcgaaag gatccggtgt
     1141 tggactgact gcttgagcct ctaccgaata gagtgcgccg ccagcgaaca cagacatggt
     1201 aagagcgcac agaaaccaga aagcttgctt cacgaattcc tccgaaataa agacgcagat
     1261 acgagcggat tagatgccct cggggagctg agcagctcgc gggtgaaagt attgtcgcac
     1321 cagcgattaa agaacggcca ttttaagcag aaggtcactt ttaccgcaag cagagctact
     1381 tagtgctgtg catcattgtg ttaagctgcc cctgccatcg ttcaatttca tctcataaag
     1441 gctgacgagt gacgaagaag gcgcttatta ctggtatcac cgggcaggac ggcagttatc
     1501 ttgcagaata ccttttgagc ctgggttatg aggtccacgg aatcgttc
//
LOCUS       DATCGC010000253         1503 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_70042, whole genome shotgun sequence.
ACCESSION   DATCGC010000253 DATCGC010000000
VERSION     DATCGC010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1503
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70042"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1503
                     /locus_tag="VIJ87_02490"
     CDS             <1..>1503
                     /locus_tag="VIJ87_02490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY5443339.1"
                     /translation="LAVSYNFDHSKNTNQTFDVATYGNSANGIEGPSKINVINVNLFT
                     TLSPSKVNEAHFSYSRELRPRSTVQSNVPADTGIGFSPSFRFGFPFFLQPNVDELLWR
                     THAKDNFSWISGNHTVKFGGEWIHTLNDQTFRGFFTGRYLFDSATGFLRYASPQAAGG
                     FGPSVLECFNGAGAFTGWRTQALGETCPAGSSAGGPLLLYLQNGISTGISGVPPPGKN
                     IAKNDDYGLFVQDSWRATPYLTLNYGLRWEAQILPDPVIPPTQTAYASLLNNPNFPSD
                     GTLHSPKKEFQPRVGFAWDLSKQGTSVLRASYGIFYGRQNMLSQVGSLTDNGAQQFGV
                     TCATSFAFTCFGASTRPPTWPNIVPVSPGGGIPFGASVRVFSKDYANPRIYTANVQFE
                     HQLATDFTVYFDFTHSQGVHLTRFININRTGSFAATPLFPTLGDIFVTSAVGKSNYNG
                     FTVGVRKRLSKRYQFEANYVLSKDKDDDSNERDPFTDRSFNPFNLALDYSV"
BASE COUNT          363 a          421 c          338 g          381 t
ORIGIN      
        1 ctagccgtct cgtacaactt cgaccactca aaaaacacaa atcaaacgtt tgacgtcgcg
       61 acctatggca actccgcgaa tggcattgaa ggcccatcaa agatcaatgt cattaacgtc
      121 aacctgttca ccacattgtc accttcaaaa gtaaacgaag cacacttctc ttactcccgc
      181 gaactccggc cacgaagtac agtgcagtcc aacgttccgg ccgacacagg cattggcttc
      241 tcgcccagtt tccgtttcgg ttttccgttt ttcttgcagc cgaacgttga tgaattgttg
      301 tggcgcacac acgccaagga taacttctcg tggatttcgg gtaaccacac cgtcaaattt
      361 gggggtgaat ggattcacac tctgaatgat caaacattca ggggattttt cactggacgc
      421 tatctcttcg actcggcgac cggcttcctg cgttatgcat caccacaggc agcgggcggg
      481 ttcggtccat cagttcttga gtgcttcaac ggtgcgggtg cgtttacagg ctggagaacc
      541 caggccctcg gcgaaacctg cccggcagga tcaagcgcag gtggtccgct cctactctat
      601 ttacagaatg gcatttcaac aggcatttcg ggtgttccac ctccaggaaa gaacattgca
      661 aagaatgatg actacggatt gttcgtacaa gattcgtggc gcgctactcc ttacttaacc
      721 ctcaactatg gtttacgttg ggaagcgcaa attcttcctg atccagtgat ccctccgacc
      781 caaacagctt atgcctcgct acttaacaat ccaaactttc cttcggatgg cacgttacat
      841 agccctaaga aagagtttca accgcgtgtg ggcttcgcat gggatctctc aaagcaagga
      901 acgtcagttc tacgggcgag ttacgggatc ttctacggcc gccaaaacat gctttcgcag
      961 gttggttctc taactgacaa tggcgcacag cagtttggtg tcacttgtgc cacctcattc
     1021 gcatttactt gttttggagc atcaacacgg cctccaacat ggcccaacat agtgccggta
     1081 tcgcctggag gcggtattcc attcggcgcg tctgtacgtg tcttcagtaa ggactatgcg
     1141 aatcctcgca tctacaccgc caatgtccag ttcgaacatc agctggctac tgacttcact
     1201 gtgtattttg attttactca ctcacagggt gtccatctga ctcgcttcat caacatcaac
     1261 cggactggtt ccttcgcagc aacaccactg ttcccaacct tgggagacat attcgtaacg
     1321 agcgcagtgg gcaagtcaaa ctacaatggg tttacagtag gtgtgagaaa acgcctcagt
     1381 aagcggtatc agtttgaagc caactacgtt ctctccaaag acaaggacga tgactcaaac
     1441 gaacgcgacc cgttcactga tcgttccttc aatccgttca atctcgctct cgactactcg
     1501 gtt
//
LOCUS       DATCGC010000254         1263 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_436287, whole genome shotgun sequence.
ACCESSION   DATCGC010000254 DATCGC010000000
VERSION     DATCGC010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1263)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1263
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_436287"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..728)
                     /locus_tag="VIJ87_02495"
     CDS             complement(<1..728)
                     /locus_tag="VIJ87_02495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443340.1"
                     /translation="MDSKPHSIPLVLKAFSVASGLLVLASAVLAQDAVRPSLAGEAAA
                     EARRQSIEQIPYNLLLGPVRFRFSITTGVEYNDNINLAERNKQDDIIFRPQFNINAIW
                     PVTQLNTLRLDLGMGYSFYVNHPENDTNGVLISPGSQLAFDIFVQDFRINIHDRFSLQ
                     QDPTDEIQLSNVVDYGRFENTFGVSVLWDLNKAVLTFGYDHYTYISTTDTFSYLDRNA
                     EILSFSAYFALTSSTGAGLETSAV"
BASE COUNT          306 a          311 c          364 g          282 t
ORIGIN      
        1 taaacggccg aagtctcgag tcccgctcca gtcgaagagg tcagggcaaa gtaggcgcta
       61 aagctgagga tttccgcatt acggtcgaga tacgaaaagg tgtcggttgt tgagatataa
      121 gtgtagtggt catagccaaa agtcagcact gccttattta agtcccagag aacagaaaca
      181 ccgaaagtat tctcaaagcg gccgtaatcg acgacgttgc tcaattggat ttcgtcagtt
      241 ggatcctgtt gtagcgagaa gcgatcgtga atgttgatcc ggaagtcttg gacgaagata
      301 tcaaacgcca actgtgagcc tggcgaaatg agaacgccgt tggtatcgtt ctccggatga
      361 ttgacgtaga agctataacc cattccgaga tcaagtcgga gtgtgtttag ctgtgtgacc
      421 ggccagatcg cgttgatgtt aaactgtggc ctgaagatga tgtcatcctg cttgttcctc
      481 tccgccaggt tgatgttgtc gttatattca accccggttg tgatactgaa ccggaaacga
      541 accggaccaa ggagaaggtt gtaaggaatc tgctcgatcg attgacgccg cgcttcagcg
      601 gcagcttccc cggcgagtga cggccgcact gcgtcttgcg caagaactgc cgaggccagg
      661 acaaggagtc cagacgcgac agaaaatgcc ttcaagacga ggggaatcga gtggggtttg
      721 gaatccatag ggaccggccg atctaggttt agcaggtgca gtaccaatcg aaggaggagt
      781 ttggcgcggc cgttcgaggc gacgacattg cacggtcgcg cgcggaaaaa tccgagagcc
      841 actcctgcaa aagatcctga ttttatgtgt ttgttttagt tggccgtttc ttacaggaat
      901 gccacgatct gggcaagaca aatcttgccc gccacgaagg gggttccctc cgattcgcgg
      961 gcaaatgttg atcgagcggg cccggcttct ttcacgcgaa aagcgcattc gaaaactggc
     1021 gcagttcaag ctgtgtccgc aagtatgcag gcctctcacc cgcagacgaa cctatgttcc
     1081 tctgtgctgg ccttttgcct cgcgttgatc gtgagctcgt caatgccagc tcatggggaa
     1141 ccggctcgtc tcgcgagcgc gccagctccg cacagtcaac gtcaggtaaa caacgtcgga
     1201 cgggctcaac cgcgggcgat taatctgagg gtgaacaatg aaaagatccg cttcaatttg
     1261 cca
//
LOCUS       DATCGC010000255         1467 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_336540, whole genome shotgun sequence.
ACCESSION   DATCGC010000255 DATCGC010000000
VERSION     DATCGC010000255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1467)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1467)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1467
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_336540"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            78..153
                     /locus_tag="VIJ87_02500"
     tRNA            78..153
                     /locus_tag="VIJ87_02500"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:111..113,aa:Ala,seq:tgc)
     gene            376..>1467
                     /locus_tag="VIJ87_02505"
     rRNA            376..>1467
                     /locus_tag="VIJ87_02505"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          379 a          344 c          444 g          300 t
ORIGIN      
        1 acatccgaat cgttcggtcg catcatcacc tgacgttcct tccttcgcgc gacagctaag
       61 cacacacagt tcaatacggg gaattagctc agctgggaga gcgcctggtt tgcaaccagg
      121 aggtcaccgg ttcgagcccg gtattctcca ccaagtttga tgagcgccgc gagcaatcgc
      181 agccttgtca cgctgaagcg cgcgagtgcg tcagcggatc tttgacaact gaatatcctg
      241 taaacggtag ttcttttcga acacgttcta agaacgtcta aacaacgttc gttaggaacg
      301 cagtgtgaga agagatcgag ctgacgttgc tgtgagttcg caaagctcat agtcacgtga
      361 gttcgagaca cttgtggtca agctactaag ggcgtacggt gaatgccttg gcgctagaag
      421 tcgatgaagg acgcggtaag ctgcgataag ccccggtgag ctgcaaacaa gctttgaccc
      481 ggggatttcc gaatggggaa accccttctg ggtaatacca ggagatcctc agctgaatac
      541 ataggctgtg gaaggcaacg gagggaagtg aaccatctca gtacctccag gaagagaaaa
      601 caatagtgat tccgctagta gcggcgagcg aacgcggaag agcccaaacc gtcgtgcatg
      661 cacggcgggg ttgtagggcc cgtcacacgg agttacaaac cggttagata gtcgaaaggc
      721 ttggaatggc ctgccataga cggtgacagc ccggtaagcg aaattacgtt ggctccgacg
      781 ggtaccctga gtaccgcggg acacgtgaaa tcccgtggga atctacgagg accatctcgt
      841 aaggctaaat actctctagc gaccgatagt gaaccagtac cgtgagggaa aggtgaaaag
      901 cacccctgtg aggggagtga aacagttcct gaaaccgtat gcctacaagc agtgggaggg
      961 ctatgccgca cttcggtgtg gaatgcctga ccgcgtgcct tttgcataat gagccggcta
     1021 gttattctca gtggcgaggt taagcgtaag cgagccgcag cgaaagcgag tccgaaatgg
     1081 gcgttcagtc attgggatta gacgcgaagc gaggtgatct atccttggcc aggatgaagt
     1141 acgggtaaca ccgtatggag gtccgaacca gtgttggttg aaaacagctt ggatgagctg
     1201 agggtaggag tgaaaggcca atcaaacttc gtgattgccc gttctcctcg aaatgccttt
     1261 aggggcagcc tcgggaggtc ggcgctggtg gtagagaact gaatggacta aggggcttac
     1321 cagcttactg aatccaatca aactgcgaat gccagcgaca cgtatcccgg gagtgagacg
     1381 gtgggggcta agcttcatcg tcgaaaggaa aacagtccag actaccggct aaggtcccta
     1441 agtgtgtgct aagtggtaaa ggatctg
//
LOCUS       DATCGC010000256         1517 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_136834, whole genome shotgun sequence.
ACCESSION   DATCGC010000256 DATCGC010000000
VERSION     DATCGC010000256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1517
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136834"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            248..>1517
                     /locus_tag="VIJ87_02510"
     CDS             248..>1517
                     /locus_tag="VIJ87_02510"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5443341.1"
                     /translation="MAFEKAKVLKAAEKFLSQGKINAAIKEYRQIVDNDSDDLTTLNM
                     LGDLYARAGKGEDAVKCFERIAEHYRSQEFNLKAIAMYKKIERLKARDPIIAHKLAEL
                     YATQGLVVDARAQYLIVADSFTRTGDNKKALDTLHKIADLDPNNTEIRLKLAEGYLKE
                     SMRREAANAFIQAANRLQHIAAHDRALEAFTKALHLFPDELDALRGMLEAHIVRGTAD
                     EAAEVLETVVQDRETDAELVSMLARAYLEAEDPEGAERATSMLMAQDAGNYLQFLPVA
                     RLYLELGKIDDSIRILASIIERMLAGREEKELLEIVNGVLERNPDHIDALRMLIRIHW
                     WQRDMDALRSSLERLAESAEAAEFIDDERYALTQLVRLAPDEQRYLDRLNLLGGLQDE
                     TSEDFSSQPEPAEVPQFETFVASEQEDSESD"
BASE COUNT          399 a          355 c          401 g          362 t
ORIGIN      
        1 gatgttcttc aggtctgaaa taagtggctt tggttaccaa acgtcgtcta aacattcgtt
       61 ggaagcatgg cctcggcgta aaaaaatagg tgcgttgaca ccctttattt acgcgtgtta
      121 gcgtatctct tggctgtgtc atgaagcgtg taaaaggaat tttgacaagc acctacatta
      181 agtaaagctt gttctgttgc ccgccgctac gataaacgcc gacccttgat ggtacataat
      241 atccctgatg gcgttcgaaa aagctaaggt cttaaaagcc gctgagaaat tcctgtcaca
      301 gggaaagatc aacgcagcaa tcaaagagta tcgtcagatc gttgacaacg attctgatga
      361 tctcacgact ttgaatatgc tgggcgatct gtacgcgcgc gccggcaaag gcgaagacgc
      421 ggttaagtgt tttgaacgca ttgccgaaca ctaccgctcg caggagttca atctaaaagc
      481 gattgcgatg tacaagaaga tcgagcgtct taaagcgcgc gatccaataa ttgcccacaa
      541 gttggcggaa ctatacgcga ctcagggctt ggtggtggat gctcgtgcgc agtacctgat
      601 agtagctgat tcgtttactc gtactggcga taataaaaag gcgctcgata ctcttcacaa
      661 gatcgccgac ctcgatccaa acaatactga aattcgacta aagctggcag aaggctattt
      721 gaaggaaagc atgcgccgcg aagctgctaa tgcttttatc caggcagcga atcgactcca
      781 gcacattgcc gcacacgaca gagcgcttga agcattcacc aaggccttgc atttgtttcc
      841 ggatgagctg gatgccctgc gcggaatgct cgaggctcac attgtccggg gtacagcaga
      901 cgaagcagca gaagttctgg aaacagtagt tcaggacagg gagactgatg ctgaactagt
      961 ttcgatgttg gcccgtgctt atctggaagc ggaagatccg gaaggtgccg agcgtgccac
     1021 tagcatgttg atggcccagg atgctggtaa ctacctacag tttcttccag tcgctcgtct
     1081 ctatctggaa ctaggcaaga ttgacgattc gatccgaatc ctggcctcca tcattgaacg
     1141 catgctagcg ggtcgcgagg aaaaggaact gctcgagatc gtcaacggtg tgctcgaacg
     1201 aaacccggat catattgacg cgctaagaat gttaattcgc atccattggt ggcaacgcga
     1261 tatggatgca ttgcgttctt cgttggagcg attagccgaa tcagctgaag ccgctgaatt
     1321 catcgacgac gagcgatatg cccttacaca attagtgcgt ctagcacccg atgaacagcg
     1381 ctacctggat cgattaaatc ttctcggcgg tttgcaggat gaaacgtcgg aagacttttc
     1441 gtcgcaacct gaacccgctg aggtaccgca gtttgaaacg tttgtggcaa gtgagcagga
     1501 agattcggag tctgatg
//
LOCUS       DATCGC010000257         1055 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_203517, whole genome shotgun sequence.
ACCESSION   DATCGC010000257 DATCGC010000000
VERSION     DATCGC010000257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1055)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1055)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1055
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_203517"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..400
                     /locus_tag="VIJ87_02515"
     CDS             <1..400
                     /locus_tag="VIJ87_02515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443342.1"
                     /translation="CEDGDLTSAGSEPPSQLQAFATLFGNLGPKWGVDYTLGRRLFRM
                     VLAANFSQPRIVFNQPIFATGENKRLLELSVAEAGPSFVAAGLITSEELQQTLDEMRR
                     LAEDDTVLALMPRMSQVWARKLAVSSLIAA"
     gene            complement(860..>1055)
                     /locus_tag="VIJ87_02520"
     CDS             complement(860..>1055)
                     /locus_tag="VIJ87_02520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443343.1"
                     /translation="KKLKVLNPSIALLKKLDDAGLLEAYILISIPDQGIIKDHPAYLK
                     DNRDKLRRYVTEYVINGGGN"
BASE COUNT          256 a          248 c          279 g          272 t
ORIGIN      
        1 ttgcgaagat ggtgacctga cttcggcagg cagtgagcct ccttcgcagt tacaagcctt
       61 cgcgacactc tttggcaacc ttgggccaaa atggggagtg gattacacat tgggacgcag
      121 gctattccga atggttctgg cggcaaattt ttcgcaaccg cgaatcgtat ttaaccaacc
      181 aattttcgcg acaggtgaga acaagcgatt gctggagtta tctgttgctg aagcgggacc
      241 atcatttgtt gccgccggtt taatcacaag tgaggagctg cagcaaaccc tggacgagat
      301 gcgtcggctc gctgaagatg acacggtgct cgcactaatg ccgagaatga gccaggtatg
      361 ggcacggaag ttagctgtct cgtccttaat tgctgcttga gtctgttggt tgttaggaca
      421 cagactgagg gaagctctga ttaagtctct taaccgcgaa gcggttgcga cctgatcaga
      481 ctttcctctg tgtcacttat tctcaacgaa tacgtgaggt gaaccccacg gtgccgatgt
      541 taaaggggaa gtcgcgctga gaagtaccgg cgttacgaag ttgggaccaa gcaagatgtc
      601 taataaatag aaaagaccac cgactccatg acggtggtct tttcaattag caacccgagg
      661 tcagggtctc tttgccttcc ttatcccaaa tctgattatg ttggttgttg ctggagcagc
      721 cggggcgtca cctcccagcg ctttgccaag gcccgaggtg aggagtacga ccagcacaaa
      781 cgacaggttc gtcgttggct ttagaaacta aaacttaatt gcttgaaccg tttgtccctt
      841 caacaacgtg tgggcaacgt tagttaccgc cgccgttgat cacgtattca gtgacataac
      901 gccgtagctt gtcgcggttg tcttttagat acgcagggtg atccttgata atcccctgat
      961 caggaattga tataagaatg taagcctcca gcagacctgc gtcgtcaagc tttttcagga
     1021 gagcaatcga tgggttcaaa acttttaatt tctta
//
LOCUS       DATCGC010000258         1038 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_270025, whole genome shotgun sequence.
ACCESSION   DATCGC010000258 DATCGC010000000
VERSION     DATCGC010000258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1038
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270025"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..752)
                     /locus_tag="VIJ87_02525"
     CDS             complement(<1..752)
                     /locus_tag="VIJ87_02525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443344.1"
                     /translation="MNKQSEGASSQNSRRRQKWVGRDMLMLKIIIVLVAICISLVYSV
                     ERGRAQRSDNPNGGPKEQQFDRQISDNAKQMIEQGKQIFRYDTFGDEVYWSGKLKLHN
                     AIQGSKFGGVGPGVSPKTALAVGLKVDVDALPADLVEKLKRGAVNLDDPATTLALISL
                     NSVLGVKGTFNRDGSLRAVGLSCAVCHSTVDDAFAPGIGHRLDGWPNQDLNVGAIVSL
                     APDLSALTDLLQVDEATVKQVLASWGPGKFDA"
     gene            complement(852..>1038)
                     /locus_tag="VIJ87_02530"
     CDS             complement(852..>1038)
                     /locus_tag="VIJ87_02530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443345.1"
                     /translation="LRDLGLRRVRLISNNPEKLQALAQMGLDLVERVSLSIPPTDAAK
                     DYLRTKKEKLGHFLELV"
BASE COUNT          235 a          308 c          241 g          254 t
ORIGIN      
        1 tcagcgtcga actttcctgg tccccaactg gcaagtacct gctttaccgt cgcttcatca
       61 acttgcaaca ggtcggtcaa agcgctcaga tcgggagcga gcgacacgat agcgccaacg
      121 tttagatcct gattgggcca accatcgagc cggtgtccaa taccaggagc aaaagcatcg
      181 tcaactgtag agtgacagac ggcacaactc agacccaccg ccctcagact cccatcccta
      241 ttgaaggttc ccttcacccc caggactgaa ttgagactaa taagcgcgag cgtcgttgcg
      301 ggatcgtcca aattcactgc gcccctcttg agcttttcaa cgaggtccgc tggcaacgca
      361 tccacatcga ctttcaaccc taccgccagc gcggttttcg gactgacgcc agggccaact
      421 ccgccgaact tgctgccttg aattgcgtta tgaagtttga gcttaccact ccaataaact
      481 tcatcaccga atgtgtcgta acggaagatt tgcttccctt gctcaatcat ctgtttagcg
      541 ttatcgctaa tctgacgatc gaattgttgc tccttcggtc cgccatttgg attatccgag
      601 cgttgagcgc ggccccgttc aactgaatag acaagtgaaa tgcagatggc gaccaacaca
      661 atgatgatct tcaacatcag catgtctctt ccaacccatt tttgccttcg gcgcgaattc
      721 tgacttgatg cgccctcgct ttgcttattc ataactccac gtccttaagt gttcaggtca
      781 agacacgctt gggggcttgt cgggttgcgt cagtgaatcg agaattgcaa tggccgattg
      841 cccggccgca ttcaaacaag ctctaagaaa tggcccagct tttccttctt ggtgcgcagg
      901 taatctttcg ccgcatctgt cggtgggatc gacagtgaca ctcgctcaac cagatcgagt
      961 cccatttgcg ccagcgcctg cagcttctct ggattgttcg aaattaaccg cactcgacgc
     1021 aggcccaggt cgcgcaag
//
LOCUS       DATCGC010000259         1573 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_136884, whole genome shotgun sequence.
ACCESSION   DATCGC010000259 DATCGC010000000
VERSION     DATCGC010000259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1573
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136884"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1519)
                     /locus_tag="VIJ87_02535"
     CDS             complement(<1..1519)
                     /locus_tag="VIJ87_02535"
                     /inference="COORDINATES: protein motif:HMM:NF013123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DPP IV N-terminal domain-containing protein"
                     /protein_id="HEY5443346.1"
                     /translation="MELSWDGSENNFYALGSIAWSPDSKSIAAYRVRPGYHRKIQYIQ
                     SSPTDQLQPKYSTIEYAKPGDTLDIEQPVLFQLATRQANVVDNSLFPNAYEISNPVWR
                     KDSRAFTFEYNQRGHQVFRVVEVNATTGKARALLSEEAKTFFCYSGKKYRYDVQDGKE
                     IIWMSERDGWNHLYLIDPETGKVKNQITKGNWVVRGVEKVDEQTRQVWFRASGMYRGK
                     DPYFNHYYRINFDGTGLTPLTDGDANHVVTFSSDMKYYVDTASRIDLPPIAQLKSTSD
                     GKLIQEVEKADIQDLIKAGWRAPEVFTSLARDGKTDIWGIIIRPTNFNPSKKYPVIEY
                     IYAGPQDSFVPKSFSAYYAMQAQAELGFIVVQVDGMGTSNRSKAFHDVAWKNLGDAGF
                     PDRILWHKAIAAKYPYYDISRVGVYGHSAGGQNALGALLFHPEFYKACVSSCGCHDNR
                     MDKIWWNEQWMGWPLGTEYANSSNVDNAWRLQGDLLLSVGEMDQNVDPASTMQVVN"
BASE COUNT          355 a          397 c          395 g          426 t
ORIGIN      
        1 cgttcacgac ctgcatggtc gaagctggat cgacattctg atccatttcc cccactgata
       61 acaggaggtc gccctgtagt ctccatgcat tgtcgacgtt cgacgagttt gcatactcgg
      121 tgccgagcgg ccaacccatc cattgctcat tccaccagat tttgtccatt cgattgtcgt
      181 gacaaccaca cgacgaaacg caggctttgt aaaactccgg atggaagagg agcgccccga
      241 gtgcattttg accgccagcg gaatggccat agaccccgac gcgactgatg tcgtagtagg
      301 gatacttagc ggcaatcgct ttgtgccaca aaatgcgatc gggaaaacct gcatcaccaa
      361 gattcttcca cgccacatca tggaaagcct tggagcgatt cgacgttccc attccgtcga
      421 cttgaaccac gatgaaacct agttctgcct gtgcctgcat tgcgtagtaa gcactaaacg
      481 acttgggaac gaatgaatcc tgcggacccg catagatgta ctcgatcacc ggatacttct
      541 tcgacggatt gaaattggtt gggcgaataa tgattcccca aatatcagtt ttgccgtcgc
      601 gcgccagtga cgtgaatact tcgggcgcac gccaacccgc tttgatcagg tcctggatgt
      661 cggccttttc aacttcctgg atgagctttc catcggacgt actttttagt tgagcaattg
      721 gagggagatc tattcgcgat gcggtgtcga cgtagtactt catgtcgctt gaaaatgtga
      781 cgacgtgatt tgcgtctccg tcagtgagtg gcgtcagacc agtaccatcg aaattgattc
      841 gatagtagtg gttgaagtac ggatctttgc ccctgtacat cccgctcgcg cgaaaccaaa
      901 cctggcgcgt ttgttcatca actttctcaa ctccacgtac gacccagttg ccttttgtga
      961 tctggttctt aactttgcca gtctcgggat caatcagata gagatggttc cagccatcac
     1021 gttccgacat ccagataatt tcttttccgt cctgtacgtc gtagcgatat ttcttaccgg
     1081 agtagcaaaa gaacgtcttc gcttcttcac tcagcagagc ccgtgccttt cccgttgtcg
     1141 cgttgacctc tacgacgcga aaaacctggt ggccgcgctg gttgtactca aacgtgaagg
     1201 cgcggctatc tttgcgccag acgggattag agatttcata agcgttcggg aagagactgt
     1261 tgtcgactac gttcgcttgt cttgttgcta gttgaaaaag tactggttgc tcgatgtcga
     1321 gggtgtcgcc gggttttgcg tattcaatcg ttgaatattt tggttgaagt tgatcagtcg
     1381 gcgacgattg aatgtattgg atcttccgat ggtaaccagg gcgaactctg taagcggcga
     1441 ttgacttgga gtcgggagac caggcaatgg agcctaaagc gtagaaattg ttttccgatc
     1501 catcccaact cagttccacg tcctcttttt tgtccttcga acggataaag agattgtagt
     1561 tcttgatata ggc
//
LOCUS       DATCGC010000260         1210 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_403189, whole genome shotgun sequence.
ACCESSION   DATCGC010000260 DATCGC010000000
VERSION     DATCGC010000260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1210)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1210)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1210
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_403189"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..451
                     /locus_tag="VIJ87_02540"
     CDS             <1..451
                     /locus_tag="VIJ87_02540"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF024675.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HEY5443347.1"
                     /translation="ETMVRVRYSETDKMGIVYYANYLVWFEIGRTDYCRARGFSYRDM
                     EENDNSFLVVAEAYCRYKAPAYYDDELIIRTHITELRKRSLRFGYEIIRPSDDTIVAE
                     GETGHVVTDSAGRVRSFPDGYIQRLLSPPVLKSTSSGEVVPTQIAPE"
     gene            813..>1210
                     /locus_tag="VIJ87_02545"
     CDS             813..>1210
                     /locus_tag="VIJ87_02545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443348.1"
                     /translation="MTTQVRPFRLKGVSSCNRILAQPVSSFNLDEILNHKAALPTASP
                     AHQRTLQEQKISSIYKEIVMRSFMITLVVAAFLLCFATITAAQTPSSAISLYKHGTSK
                     LNKNDLDGAIQDFTKAIELSSRFGPAKADKG"
BASE COUNT          306 a          339 c          278 g          287 t
ORIGIN      
        1 cgaaacgatg gtccgtgtcc gttactccga aacggacaag atgggcatcg tctattatgc
       61 caattacctg gtctggttcg aaatagggag aacggattac tgccgggctc gcggcttttc
      121 gtacagggac atggaagaaa acgacaactc gtttctggtg gtcgctgaag cttattgccg
      181 atacaaggcg cctgcgtatt acgacgatga gctgatcatt cgtacgcaca tcaccgaatt
      241 gcggaaacga tccctgcgat ttggctacga aatcattcga ccttcggacg atacgatcgt
      301 cgctgaagga gaaacaggtc acgttgttac cgactcagcc ggacgcgtca ggtcatttcc
      361 ggatggttac attcagcgac tgctgtcacc acctgttctc aaatcaacat cttcaggcga
      421 agtagtaccc acccagatcg ccccagagta aagttcccta gtcaagtatc atcgtgattc
      481 agaacagggg cgaagcgact gctctgcgct ttcgtggaca cctccgttga aagcagtcac
      541 ttcgctcctg ttctgacttc cgcggtgaat ccaaatgccg aattccgtac gcacctacca
      601 atacttcgga cactcatttc ttcttgtcac aacccaacac accgcggtgt tcagtctgta
      661 gagaccactc cccatttcat tgtaactttt ttaaaagttg agcgtttaca gattagtcag
      721 taatagaaac cgcctggccc gcgggaagcc catcgaaaac agcgtgctca aattaagagc
      781 ctcgccgcta cttgcgatag caacgaggct cgatgacaac acaagttcga cccttccggc
      841 tcaaaggtgt atcgtcgtgt aaccgcatct tagcgcagcc ggtgtcgagc ttcaacctcg
      901 acgagatttt aaatcacaaa gctgcgcttc caaccgcatc cccggcccat cagcgcactt
      961 tgcaggagca aaagatctcg tcgatctaca aggagatcgt catgcgctcg ttcatgatca
     1021 cgttagttgt cgctgcgttt ctactttgct tcgccacgat taccgccgcc cagactccct
     1081 ctagtgccat cagtctttat aagcacggta cttcgaaact aaacaaaaac gatctggatg
     1141 gcgcaatcca ggatttcact aaagccatcg aactcagttc gcgtttcgga ccagcgaaag
     1201 ccgataaagg
//
LOCUS       DATCGC010000261         1276 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_403190, whole genome shotgun sequence.
ACCESSION   DATCGC010000261 DATCGC010000000
VERSION     DATCGC010000261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1276)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1276)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1276
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_403190"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..845)
                     /locus_tag="VIJ87_02550"
     CDS             complement(<1..845)
                     /locus_tag="VIJ87_02550"
                     /inference="COORDINATES: protein motif:HMM:NF013694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046873 - metal ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEY5443349.1"
                     /translation="MDIFVYRNGSDTVEEHHEVGVIPDLLKDENLIFWVDFESPTDVD
                     DHVLLDVFKFHPLTVEDCRATRHHPKVEEFPDYLYFIVHAIRKDASPDRFNTVELDGF
                     LGRNYVVTYHHEPFSSVDKVKQSIRVSPVTCQRGAPYILHFIIDNIVDEYLPVMDDFD
                     ERINALEDDIFSLGRANKEILEEILGLKRSLLRVKRISSKQLEVLYRMSHGQFDLISG
                     PVLPFFRDIFDHLVRVTDLAESYRDLISGSLEAYLSVVSNRLNEIMKVLTIFSAVMLP
                     LTFIAG"
     gene            1050..>1276
                     /locus_tag="VIJ87_02555"
     CDS             1050..>1276
                     /locus_tag="VIJ87_02555"
                     /inference="COORDINATES: protein motif:HMM:NF012607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443350.1"
                     /translation="MKILVADDVSESGLQPLRAAGLNVEKRTGLTKPELIEALKDCEG
                     LIVRSETKVTAEILEGAGTLRVIGRAGVGVD"
BASE COUNT          337 a          311 c          328 g          300 t
ORIGIN      
        1 cccgcgatga acgttaacgg cagcatgacc gctgagaaga tcgtcagcac tttcatgatc
       61 tcattcaaac gatttgagac cacggacaaa tacgcttcca acgatccact gatcaagtct
      121 cgataactct ccgctaaatc tgtcactctc accaggtggt cgaagatatc gcgaaagaac
      181 ggcagtactg gtccgctgat caggtcaaac tgaccatgac tcattcggta caacacttcg
      241 agttgctttg aggagattcg tttgactctg agcaggctcc tcttcagccc gagtatctct
      301 tcgaggattt ccttgttagc gcgtccaagc gaaaagatgt cgtcctcaag tgcgttgatc
      361 cgctcgtcga agtcgtccat caccggtaag tactcatcga cgatgttgtc gataatgaag
      421 tgcaggatgt acggcgcacc acgctgacaa gtaaccgggc tcacgcgtat tgactgcttg
      481 accttgtcga cgctggaaaa aggctcgtgg tgataagtaa ctacatagtt tcgcccgagg
      541 aagccatcca gttcgacggt attgaaacga tcaggactcg cgtctttacg aatagcgtga
      601 acgataaaat agagataatc ggggaactct tctaccttcg gatggtgacg agtggcgcgg
      661 caatcctcaa cagtcagcgg gtgaaactta aacacgtcga gcagcacgtg atcgtcaaca
      721 tcggttgggc tctcaaagtc gacccagaag atgaggtttt catctttcag aagatcagga
      781 atgacaccga cctcgtgatg ttcttccaca gtgtcgctgc cattgcgata aacgaaaatg
      841 tccatcaggg ttcctctctg aaagctacgc tcgctcgacc agttatggtc agactgttac
      901 catacgggac ttttactggc aagactttga gttaaggagt cagttcacaa cgcggtagcg
      961 tgtggcccgg ctcaggcatt gtctctcaat aattacagca tcagccacac gctaccgcgt
     1021 tgtggtactg acctcgatac aaaggaacca tgaaaatact tgttgcagat gacgttagtg
     1081 aaagtggatt gcaaccactg cgtgcagcgg ggttgaatgt tgaaaaacga actggactca
     1141 cgaaacctga gttgattgaa gcgctcaagg attgcgaagg cttgatcgtt cgtagtgaaa
     1201 caaaggttac ggccgaaata ctggaaggcg ccggcacctt gcgagtaatt ggtcgggcag
     1261 gagtcggcgt cgacaa
//
LOCUS       DATCGC010000262         1751 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_436419, whole genome shotgun sequence.
ACCESSION   DATCGC010000262 DATCGC010000000
VERSION     DATCGC010000262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1751
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_436419"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1614
                     /locus_tag="VIJ87_02560"
     CDS             <1..1614
                     /locus_tag="VIJ87_02560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443351.1"
                     /translation="NSKLPRSVAEVLKEHVELELESIDRMYLNVFVPRLQIVEGALRF
                     IKQQRGSKVLSTSAVEPMTRGFIRAIEQFAEGNEIPVVHFEKGQRKDDIATQRRSEFQ
                     KPEGVVFIGKAQEKSRVYRTEKRHNPKTNKSYAWVIKSTAMVNQYYFYCVDEDFGPFF
                     IKFCSYFPYNAKLCLNGHEYAKRQLEREGIAYQALDNGVLSCEDPKRLQEICDGLSAT
                     KIDRLLRKWLRQLPHPFPPKDRRAGYRYQISILQIELSLTQVLDRPVSGRIFFEEVIR
                     ENLDIGRPKQVQLIFDRWVTKSTPGSFRTRVITDGVIPSLHIDYKGTRVKQYHKEGQA
                     LRTETTINNTRDFYIGKRLKNLPALRQIGFQANRRLLQTQTISHDCILAEETFQQLNR
                     PRIVDDQRASALRFADPTVQALWNALLTFDLLPAGFSNRDLRLNLSGLLGRSVDHFTQ
                     GRMTYQLRRLRLHGLIARIPKTHRYRLTSFGLRVALFCTRTYNRILRPGLGQLTAVST
                     RSVPQPLRRSFNNVELQIQHWIHREGLAA"
BASE COUNT          416 a          517 c          404 g          414 t
ORIGIN      
        1 aactccaaat taccacggag cgtggccgaa gtcttgaagg agcacgtgga gttggaactc
       61 gaatccatcg atcggatgta tctgaatgtt ttcgttcctc gtttgcagat tgtcgaaggc
      121 gcgctgcggt tcatcaagca acaacgcggt tcgaaagtgt tatccacgtc tgctgtggag
      181 ccgatgactc gcggatttat ccgtgctatc gaacagtttg ccgaggggaa cgaaattcct
      241 gtcgtgcatt tcgaaaaagg acaacggaaa gacgacattg caacccagag gaggtctgaa
      301 ttccagaagc ccgaaggagt cgtcttcatc ggcaaagctc aggagaagag ccgggtttac
      361 cgcactgaaa aacgccacaa tccgaaaacc aacaagagct acgcatgggt catcaagtcc
      421 acggcaatgg tgaaccaata ctacttctac tgcgtggacg aagactttgg ccctttcttc
      481 atcaagttct gctcctactt cccctacaac gccaagctct gtctcaatgg ccacgagtac
      541 gcgaaacgac aactcgaacg agagggtatt gcttaccaag ccttagacaa tggcgttctt
      601 tcctgtgaag atccaaagcg cctccaggaa atctgcgatg gtttgtcggc tacgaagatc
      661 gacaggcttt tgcgcaaatg gcttcggcaa ctgccccatc cctttccccc taaggatcgt
      721 cgagcgggct accgctatca aatctccatc cttcaaatcg aactgtctct aacccaggtt
      781 ctcgaccggc ccgtcagcgg caggattttc ttcgaagagg tgattcgcga aaatctcgat
      841 atcggacgcc ccaagcaagt tcaattgatt ttcgatcgtt gggtcaccaa gagcaccccg
      901 ggatcatttc ggacgcgggt catcaccgat ggcgtgattc cctcactgca catcgattac
      961 aaaggcactc gcgttaagca gtatcacaag gaaggtcaag ccctgcgcac cgagaccacc
     1021 atcaacaata cccgggattt ctacattggc aagagattga aaaatctacc cgctctgcga
     1081 cagattggct ttcaggccaa tcgacgcctc cttcagacgc agacgatcag tcacgattgc
     1141 atcctcgccg aggaaacgtt tcaacaactg aaccgcccac gaatcgtgga cgatcaacgc
     1201 gcctccgcat tgcgtttcgc cgatcccacc gtacaggctc tctggaatgc tctactgact
     1261 tttgatcttc tcccggcagg tttctccaac cgcgacctcc ggctcaatct ctctggtctg
     1321 ctcggacgat ctgtcgatca ctttactcaa ggccgaatga cctatcagct ccgtcgcctt
     1381 cgcctccacg gattgatcgc ccgcattccc aaaactcacc gttaccggct tacgtccttc
     1441 ggcttgcgcg ttgctctgtt ttgtacccga acttacaatc ggattctgcg gcctggcctc
     1501 ggacaactta ctgctgtatc gactcgatcc gtaccccagc ctctgcgtcg cagctttaat
     1561 aacgttgaac tccaaatcca acactggatt caccgagagg gattggctgc atgaaacttg
     1621 actcatttac atcaactttt cttcctcaag ggatctagct gtgcttttca tccatctcat
     1681 tacgacaatc gcccgactcg caggtcccgg cggcgcacgt tctgtggtcg ccgaatctgt
     1741 tctggtcaag c
//
LOCUS       DATCGC010000263         1132 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_136972, whole genome shotgun sequence.
ACCESSION   DATCGC010000263 DATCGC010000000
VERSION     DATCGC010000263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1132)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1132)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1132
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136972"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..666)
                     /locus_tag="VIJ87_02565"
     CDS             complement(<1..666)
                     /locus_tag="VIJ87_02565"
                     /inference="COORDINATES: protein motif:HMM:NF015042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase-related protein"
                     /protein_id="HEY5443352.1"
                     /translation="MKIAVAMSGGVDSSAAAAILKEQGHELVGFTMQLWDQRRGINVD
                     ENGDPLPSRCCSLDDVYDARRVAEELGFPFYVLNLERDFERDVVQPFVTSYLNGETPI
                     PCVSCNSRLKFASLDRLAVSLGCVKVATGHYARVEFDPAANRHKLFRGQNHQKDQSYF
                     LWELTQEQLSRAMFPLGEMSKPEARDAARNHGLAVAEKKESQEICFVPDGDYAGFIDR
                     YLEA"
     gene            882..>1132
                     /locus_tag="VIJ87_02570"
     CDS             882..>1132
                     /locus_tag="VIJ87_02570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018286761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY5443353.1"
                     /translation="MPESAIQEYRVANEPYYLPVGREIELFEAAHSARLPVILKGPTG
                     CGKTRFVEHMAWRLERPLITVACHEDLSSTDLVGRFLLE"
BASE COUNT          274 a          317 c          282 g          259 t
ORIGIN      
        1 ggcttcgagg tagcgatcaa tgaatccagc gtagtcaccg tcaggaacaa agcaaatctc
       61 ctgcgactcc ttcttttcag ccacggccag accatgattg cgtgcagcat cgcgtgcttc
      121 aggcttcgac atctccccca aaggaaacat cgcgcgtgac aactgttctt gcgtgagttc
      181 ccaaagaaag tacgactgat ctttttggtg attctgaccg cggaacagct tgtggcgatt
      241 cgccgctgga tcaaactcta cacgcgcgta atgacccgtc gcgaccttta cacaacccag
      301 gctaaccgcg agtcgatcga gtgaagcaaa cttcaaacga ctgttacatg agacacacgg
      361 aattggagtt tcaccattca ggtaactggt aacaaatggc tggactacat cgcgttcgaa
      421 atcgcgctcg agattgagca cgtagaatgg aaaaccgagc tcttcagcaa ctcgtcgtgc
      481 gtcatagacg tcgtcaagtg aacaacaacg cgacggaagc ggatcaccgt tttcgtcaac
      541 gttaatacct cgacgttggt cccagagctg cattgtgaag ccaacgagct catgaccctg
      601 ttctttaaga attgctgcgg ctgcggatga atccacaccg ccactcattg ctacagctat
      661 tttcatttag taaatcgtac tcaggtgcag tagtgcttag atcaattgtg cgcaccgtct
      721 ggtcgggtag agccctcctt gacagtcggg ctactgcacc gggctactgc accggagtac
      781 tgcaccgggc tagtgcgcct catacactcc acctcaatcg gcaattggaa atcggcaatc
      841 cccttgctaa gatgcccgtc cgtttagaaa actaacctct tatgcctgaa agcgcaattc
      901 aagagtaccg ggtagccaac gaaccctatt acctgccagt cggacgcgag attgagctgt
      961 ttgaagccgc tcactccgcc cgtttgccgg tgattcttaa gggtccaaca gggtgcggca
     1021 agacacgttt cgtcgaacac atggcgtggc gtctcgaacg gcccttgatc acggtcgcgt
     1081 gtcacgaaga cctgtcgtca accgatctgg tcgggcgttt tctgctcgaa ag
//
LOCUS       DATCGC010000264         1438 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_5337, whole genome shotgun sequence.
ACCESSION   DATCGC010000264 DATCGC010000000
VERSION     DATCGC010000264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1438)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1438)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1438
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5337"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..552)
                     /locus_tag="VIJ87_02575"
     CDS             complement(<1..552)
                     /locus_tag="VIJ87_02575"
                     /inference="COORDINATES: protein motif:HMM:NF027338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate-binding family 9-like protein"
                     /protein_id="HEY5443354.1"
                     /translation="MRNKILIVALIGMFGLTGKPQTPTPVYNVTRTSEPIKIDGNLND
                     TAWNKALPVGDFVNNLDGSQSSYKTEARVLYDDNFIYFAFRCVDENIWATMKRRDQHL
                     WDEEVVEVFLQGDPNQPGYIELEVNPLGTLLDLYMLAPRKPLHYESWNSEKLRWAVKV
                     KGTVDGKPGDAEWTCEIALPVEDV"
     gene            complement(685..1236)
                     /locus_tag="VIJ87_02580"
     CDS             complement(685..1236)
                     /locus_tag="VIJ87_02580"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEY5443355.1"
                     /translation="MTKMKGLWSVGETLQRYKNAWIEVNEDQVVRPDGEPEIFATVTM
                     RPGVSVLALDDKGMVYLTSEYRYAVERDSVEVVSGGIEPDEQPLTAARRELLEELGIE
                     AAEWTELGTVDPFTSAIFSPATLYLARQLKMGEPSPECTEIISVIKVDFTEAVRMVMA
                     SEITHGPSCVLILKTYLRLSRDL"
BASE COUNT          368 a          391 c          319 g          360 t
ORIGIN      
        1 aacatcttca acgggaagag cgatttcgca ggtccattca gcatcacctg gcttcccatc
       61 aacggtccct ttcactttca ccgcccaacg caacttttca ctgttccaac tttcgtagtg
      121 cagaggcttt ctgggggcga gcatgtagag gtccagcaaa gtgccaaggg gattgacttc
      181 gagttcgata tagccaggtt gattaggatc accctgaaga aagacctcca caacctcttc
      241 gtcccaaagg tgctggtcgc gacgtttcat ggttgcccaa atgttttcat caacacagcg
      301 gaaggcaaag taaataaagt tgtcatcgta gagcactctc gcttcggtct tgtacgagct
      361 ttgagaaccg tctaagttat tcacaaaatc gccaacgggt aatgctttgt tccaagcggt
      421 gtcattgaga ttgccatcga tcttgatcgg ttcggatgtt cgtgtaacgt tataaaccgg
      481 cgtcggcgtc tgaggttttc cagtcaagcc gaacataccg atcaaagcaa caataagaat
      541 tttgtttcgc atacagctgc ttaaatgagg aagagcaata caactggcaa caacgattgc
      601 ctactaccgc gaagcggttg agtgttacgc gacctcttgc aagcctgttg ttgcacttcc
      661 ctgtcgaatc cgcacatgtt cactttagag atcgcgactc agccgcaaat acgtcttcag
      721 gatcagaaca caacttggcc catgagtaat ctcgcttgcc attaccattc gcaccgcctc
      781 tgtaaagtca accttaatca cgctaatgat ttcagtgcat tcaggtgaag gttcccccat
      841 ctttaattgg cgtgccaggt acaaagtggc gggtgaaaaa attgcggaag tgaatggatc
      901 aactgttccc aactccgtcc attcagctgc ttcgataccg agttcttcta gcaattcccg
      961 gcgtgcggca gtcaatggtt gttcgtcagg ttcaataccc ccactgacga cctcaacact
     1021 gtcgcgttcg actgcgtacc gatactcgct cgtcaaatac accattccct tatcgtccag
     1081 cgccagcacg gacacaccgg gccgcatcgt cactgtcgca aaaatctccg gctcgccgtc
     1141 aggtcttaca acttggtctt cgttgacttc aatccaggcg ttcttatatc gctgtaatgt
     1201 ttctccaacc gaccagaggc ctttcatctt tgtcatgcac accaccttcc acctgcattt
     1261 cgaaatggcc atgcttcgtg tgccatgacc agatgaaaaa gcaaatcaca ccgaggccaa
     1321 gggtcccatc cccaaaagta tgatgggcct atcggtagtt gcgaaaataa ataccaaacc
     1381 cgcaagcgca accaaattcg gaaatcgggt gaagccaaat gagataaggt tgggccat
//
LOCUS       DATCGC010000265         1167 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_336727, whole genome shotgun sequence.
ACCESSION   DATCGC010000265 DATCGC010000000
VERSION     DATCGC010000265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1167)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1167)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1167
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_336727"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..650)
                     /locus_tag="VIJ87_02585"
     CDS             complement(<1..650)
                     /locus_tag="VIJ87_02585"
                     /inference="COORDINATES: protein motif:HMM:NF013123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DPP IV N-terminal domain-containing protein"
                     /protein_id="HEY5443356.1"
                     /translation="MKHKILLIPVFLLLLVPVLAQQVDPSLLTVDSIFTYRTKSLGPV
                     AWQENGSGYLALEPSAAKKDAVDIVRYDALGGERTVKVSAEKLTPTGEQPLTVEEFAL
                     ASDEQKVLIFTNSARVWRSNTRGDYWVLDLKAGTLRKLGGSDAKPSSLMFAKFSPDGE
                     RVAYVRENNIYVENLSGDSKITQLTNDGARYIVNGTFDWVYEEELFCRDGFRWSPD"
     gene            complement(810..>1167)
                     /locus_tag="VIJ87_02590"
     CDS             complement(810..>1167)
                     /locus_tag="VIJ87_02590"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5443357.1"
                     /translation="EDDEDSRKLISTMLKQHGAEVTAVGSAADAISVFLEKTPDVLVS
                     DIGMPEQDGYELIQKIRALPLGQGRVPAIALTGYATRKDRERSLTAGYHSHLAKPIEQ
                     TELVAAIAGLLRSLSD"
BASE COUNT          299 a          300 c          289 g          279 t
ORIGIN      
        1 ctgtcgggac tccagcgaaa accgtcacga cagaacaact cttcttcgta aacccaatca
       61 aaggtcccat tgacgatgta ccgagcgcca tcatttgtca gttgagtaat ctttgaatcg
      121 ccggaaagat tctcgacgta gatattgttc tcacgcacgt atgcgacgcg ttcgccgtca
      181 ggtgagaact tggcaaacat caaactggaa ggctttgcat cggagccacc aagcttgcga
      241 agtgttcccg cctttaagtc gagtacccag taatcacccc tggtgttact ccgccaaacc
      301 cgcgccgaat tagtaaagat gagtaccttt tgttcgtcac tagcgagggc aaattcctca
      361 acggtcaatg gctgctcacc ggtcggagta agcttttcag cagaaacttt gactgttcgc
      421 tcaccaccga gcgcatcgta acggacgatg tcgacagcgt cctttttcgc ggctgatggt
      481 tcaagcgcaa gatatccgct tccattttcc tgccaggcaa ccgggcccag cgatttagtt
      541 cgataagtaa agatcgagtc taccgtcaac aacgaagggt cgacttgttg agccagaacg
      601 gggacaagga gaagtaagaa aactgggata agcagaattt tgtgtttcat gttttgttgt
      661 accgcggaga tgaattggga gcgaaaagga ttctacagtg gtggggaaga aaatagaaat
      721 tgaggatttg gtcttgagtc tttggtctta gaactttgga ttcccgccat cacaatcgaa
      781 cacccgatac ccgacacccc aagaccaact caatctgaaa gcgaacgaag cagacccgcg
      841 attgctgcaa ccagttcggt ctgctcgatc ggtttggcga ggtgggaatg gtaaccggcg
      901 gtcagtgaac gttcgcgatc tttacgtgtt gcataccccg tcaaagcaat cgccggaacg
      961 cggccttgcc ccagtggcaa tgctcgaatt ttttgaatca attcataacc gtcctgctcg
     1021 ggcatgccga tatcagaaac gagcacatcc ggcgtctttt caagaaatac gctgatagcg
     1081 tcagcagctg agccaacggc agtgacctcc gcaccatgtt gcttcaacat agtgctgatt
     1141 agtttcctcg agtcctcatc atcttcg
//
LOCUS       DATCGC010000266         2524 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_270167, whole genome shotgun sequence.
ACCESSION   DATCGC010000266 DATCGC010000000
VERSION     DATCGC010000266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2524
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270167"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..976
                     /locus_tag="VIJ87_02595"
     CDS             <1..976
                     /locus_tag="VIJ87_02595"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEY5443358.1"
                     /translation="FLGSHLVRQLIEEGAKDIRVMSTSVPDWLVDLGVETFEGSITNS
                     EDTKRAVEGIRDIYHLAGKVSRERADSREMYNIHVEGTRLLCDAAKAAGAKNIVLAST
                     SGTIAVTKDGDLIPDETYPPPLEIVSRWPYYASKAYQEMAALERFSGKGLRLVIMNPS
                     LLLGPGDDRLSSTKVVLDFMAKKIGAVPTGGVSFVDARDAAASFRSAMKKGRHGERYL
                     LGAVNWTFNKFFGRLERLTKISAPRFALPSRLAITGAQVVDAFFKQWELTSPVEPGAV
                     EMAQYFWYLNCSKAARELSFKPRDPAETLQDTVSYLRENFLGGNAFGK"
     gene            1139..>2524
                     /locus_tag="VIJ87_02600"
     CDS             1139..>2524
                     /locus_tag="VIJ87_02600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443359.1"
                     /translation="MLLRLLCLMVFLVVAGHAQTQTQNNQTTLQQGIPIERTMGANES
                     HSYSINLSDEQYLQFAVDQRGVDVIVRVFSPTGKSLGDFDTPNGAQGPENVSIVALTS
                     GLYRIVVSPLDSNNVSEPGKYEIKILEIRDATEQELKVGKNEDVRKAKGLALLNDIID
                     SIPEIHQPRTRIKVKMQSATLLWSIDEKKAIKLLSEAVTDARDYFLTIKPSDPSYDES
                     SVWAQQIRFEAVQTLALYDPEAALNLFRSTRRPVDTEVGRGNGQNEQQFELTLASQIA
                     RRNPQRAFELAEESLKEGISGSLPFAISSLQRSNPELAATLAKDVTAKLLEQKLLENS
                     SAAEVAMNLIRNFQNRAEKDRRALSAPFLSLEDFRALVRKAVNEALSASISDGNFSID
                     EKRIMVMNGNTTSFVVPNPVKSVAIRANMVGELLSSIKEAVGSDLDSIVPGGNAAVDK
                     RLLELRGPERRL"
BASE COUNT          645 a          653 c          646 g          580 t
ORIGIN      
        1 attcctcggc tcacatcttg ttcgtcagct tatcgaagag ggcgccaagg acattcgggt
       61 catgtcgact tcggttcccg attggctcgt tgaccttggt gttgaaacct ttgagggttc
      121 gataacaaat tcagaagaca ctaaacgggc agtcgaaggc attcgcgaca tctaccatct
      181 tgccggcaag gtttcacggg aacgcgcaga ttcgcgcgag atgtacaaca tccatgtcga
      241 gggaacgcgc ttgctttgtg acgccgcgaa ggccgccggt gcaaagaaca tcgtattggc
      301 atcgacgagc ggcactatcg ctgtcaccaa agacggagat ctcattcccg acgaaactta
      361 tccaccgcca cttgaaattg tttcgcgttg gccctactac gccagcaagg cctatcagga
      421 gatggcagcg ttggaacgat tcagtggcaa aggcctcaga ctggtaatca tgaatcccag
      481 tctcttgctt ggacccggcg atgatcgact gagttctacc aaagttgtac tcgacttcat
      541 ggccaaaaag attggtgccg tcccaaccgg cggagtcagt tttgttgatg cccgtgatgc
      601 ggccgctagt tttcgctcag caatgaaaaa aggtcgtcat ggtgagcgct atctacttgg
      661 cgcagtgaac tggaccttca acaaattctt cggacgcctt gagcgtctga ctaaaatctc
      721 cgctccccga ttcgcgctcc cttcacggct ggccattacg ggcgctcaag tagtcgacgc
      781 ttttttcaaa caatgggaac ttacctcgcc ggtggaacca ggcgccgtgg agatggctca
      841 gtacttctgg tacctcaact gctccaaagc cgctcgcgaa ctaagcttca aacctcgtga
      901 tccggccgaa actcttcaag acacggttag ctacttacgt gagaatttcc ttggcgggaa
      961 cgccttcggg aagtaagcta cctttgttct ctccggctaa ccaacctaaa gcgatctgcc
     1021 aggcatctct aacgaagtct tgaaaacttt ggaaccttgc gtctcgttac tagtgattag
     1081 taaaacgtag aagtgttttc acttggtctg gaggttctgt atgcggtgtt cccgatcaat
     1141 gttgctccgc cttctctgcc tgatggtttt cctggtcgtc gctggccacg cacagaccca
     1201 gacacaaaac aatcagacaa ccctgcaaca aggcattcct atcgagcgga cgatgggcgc
     1261 gaacgaatct cacagctact cgattaatct gagcgacgaa caatatcttc agtttgcagt
     1321 cgaccagcgc ggtgtcgatg tcatcgtccg agtgttttca cctacgggca agagtctcgg
     1381 tgacttcgat acacctaacg gagcccaggg tccagagaac gtttccatcg tcgccctaac
     1441 gagcggtctg tatcgaatcg tagtttcacc actcgattcg aacaatgtct ctgagccggg
     1501 caaatatgaa atcaaaatcc ttgagattcg cgatgcaact gaacaggaat tgaaggtcgg
     1561 caaaaacgag gacgtaagaa aagcgaaggg cctggcactt cttaacgaca ttatcgactc
     1621 gattccagag attcatcaac ctagaactcg gatcaaagta aaaatgcaga gcgccacttt
     1681 gctgtggtct attgatgaaa agaaagcaat caaactgttg agcgaagcgg ttaccgacgc
     1741 gagagactat ttcctgacca tcaaacctag cgatccgtct tatgacgaat cgtccgtttg
     1801 ggcgcagcag atccgcttcg aagccgtaca gactctggcg ctttacgatc cagaagctgc
     1861 tttgaatcta tttcgctcaa cccgacgacc ggtggatacg gaggttggtc gagggaacgg
     1921 tcaaaacgaa cagcagtttg agttgacgct cgccagtcaa atcgcgcgcc gcaaccctca
     1981 acgagcattc gagcttgccg aagagagttt gaaagaaggc atttcgggct cgttaccttt
     2041 cgcgattagc agcctgcagc gatcaaatcc ggaacttgca gccacacttg caaaggacgt
     2101 caccgcaaaa cttctagaac agaaactcct cgagaattct agtgcggctg aggttgcgat
     2161 gaatctcatc cggaactttc agaatagagc agaaaaggac cgcagagcat tgtctgcgcc
     2221 attcttatcg ctagaggact ttagagcact tgtgcgaaag gcggtgaacg aagcgctttc
     2281 cgcctcaata agcgacggga acttctcgat cgacgagaaa cgcatcatgg tgatgaatgg
     2341 aaacacgacc tcatttgtag tacctaaccc cgtcaagagc gtcgccataa gggcaaatat
     2401 ggttggggag ttactaagca gtatcaagga ggctgttggc agcgatttgg atagtatcgt
     2461 accgggtggc aatgcagcgg tggacaaaag gcttttagaa ctccgaggcc ctgaaaggcg
     2521 gctg
//
LOCUS       DATCGC010000267         1508 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_469815, whole genome shotgun sequence.
ACCESSION   DATCGC010000267 DATCGC010000000
VERSION     DATCGC010000267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1508)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1508)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1508
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_469815"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..986)
                     /locus_tag="VIJ87_02605"
     CDS             complement(<1..986)
                     /locus_tag="VIJ87_02605"
                     /inference="COORDINATES: protein motif:HMM:NF025851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 95 protein"
                     /protein_id="HEY5443360.1"
                     /translation="MNSFSKEWNSVGAVVVLCLAMAARASTTDDLILWFDTPATQFTQ
                     SLPLGNGRLGATVFGGVAEEQLVLNESSLWSGSPQDADRPDASSYLPEIRRLLLEGNN
                     AEAEKLVYSHFTCKGPGSGRGGGKDVQYGSYQTLGRLKLAFTGEQGEATRYRRELNIA
                     TAVTRVEYEQSGITFSREMFVSAPDQVIVVRLSASRPQSINFEATMDRQELFTVSADG
                     GNSLLMNGQLNNGTDGKGMKYAARLRAINKGGEVSVVNNAIRVKQATEVVLLLSAATD
                     FRGFAGRQTPDAASASAADIEKALRKTYATLLAAHTTDYQRYFDRVSLSLGAP"
BASE COUNT          375 a          435 c          371 g          327 t
ORIGIN      
        1 ggagcgccaa gactgagact gacgcgatca aagtagcgct ggtaatcggt cgtgtgcgcc
       61 gctaaaagtg tcgcgtatgt tttccttagt gccttctcga tgtctgctgc tgaagcggat
      121 gcggcatcag gagtctgacg accggcaaac cccctgaaat cagttgctgc cgagagcaac
      181 aagacaacct cagtcgcctg cttcacacgg atagcattat taacgacgga gacctcgccg
      241 cccttgttga ttgcacgaag gcgcgcggcg tacttcattc ccttgccgtc ggtgccattg
      301 ttcaattggc cgttcatcag gaggctatta cctccatcag ctgaaactgt aaacagctcc
      361 tgacgatcca ttgttgcttc gaagttaatc gactgcggcc gactcgctga caagcgcacg
      421 acgatcacct ggtcaggcgc tgatacaaac atctcgcgag aaaacgtaat tccactctgc
      481 tcatactcaa cgcgagttac agccgttgca atattcaact cgcgccgata acgcgtcgcc
      541 tcaccttgct cgccggtgaa agccaacttc aatcgaccca gagtctgata tgaaccatat
      601 tggacgtcct taccgcctcc acgtcccgag ccggggcctt tgcaggtgaa atgagaatag
      661 acgagcttct ctgcctcggc attattacct tccagcagta agcggcgaat ctctgggaga
      721 tagctcgaag catcaggtcg atccgcgtct tggggtgaac cggaccacaa tgaactctca
      781 ttcagaacaa gctgttcttc cgcaacaccg ccaaagacgg tcgcgcccaa tcggccattg
      841 cccaatggta acgattgagt aaattgtgtg gccggagtat caaaccaaag aataagatca
      901 tcggtggtac tagcacgggc agccatggcc agacacaaga ccaccaccgc gccaacacta
      961 ttccattctt tgctgaaaga gttcatgagt ctggataaag actttccaca aaagtccaaa
     1021 tcccacgcac ggcagtgcgg ggatttgttc aagtccaacc tacaaggacg ctactgagac
     1081 ttttcctaat cccaccaacg gcagttggtg gatggttcag gtccagcctc gacctcaaga
     1141 ccagaagaaa cagttggata cttcgtaaca cttcgaccaa ggttgcagtt tccgttgtcg
     1201 cagcagaccg aaggttggac ttgaacaaat ccaccaactg ccgttggtgg gattcggata
     1261 accttcaaac cgatcccttt agtaggtcgg acctgaacaa tccccgcact gccgtgcgtg
     1321 ggattctcga cttttccgtg caaagccctg gatataaagt tcgagcgctt gcgctgggac
     1381 cacgggagtc ccgcctgcct gttttactca gtaccaccaa atacccggga gcatccatca
     1441 accggaacgt ggtcgtacca caagagcgca gtcaggcgag acgcctgtgg ttccaacaca
     1501 agcgctcg
//
LOCUS       DATCGC010000268         1189 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_70384, whole genome shotgun sequence.
ACCESSION   DATCGC010000268 DATCGC010000000
VERSION     DATCGC010000268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1189)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1189)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1189
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70384"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            271..420
                     /locus_tag="VIJ87_02610"
     CDS             271..420
                     /locus_tag="VIJ87_02610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443361.1"
                     /translation="MDKEARKRIKDAIEKKNQARQKGLKERSSDSAKTKERPGYTVRP
                     EKKRG"
     gene            complement(464..>1189)
                     /locus_tag="VIJ87_02615"
     CDS             complement(464..>1189)
                     /locus_tag="VIJ87_02615"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VCBS repeat-containing protein"
                     /protein_id="HEY5443362.1"
                     /translation="HGLALADMNSDNKLDLVTVNNADNDVSIAFGDGRGAFTIASGSP
                     FSVGPSPYPLAVGDVNGDGQLDIVATATATGPLRAQQLPLSRALTLLLSDGRGGFRSS
                     ILPLRTGEPWFAVISDLNGDRKPDIVATHHELNQLTVMLGDGRGGFVEAGGSPFDLGH
                     QGFHAVVADVNRDGKMDVIAAGGDSLLVMLGDGRGRFAPGPKIPTGRGAWRLDEGDLN
                     GDGKMDFVTSNSESGTVSVLLGR"
BASE COUNT          302 a          336 c          302 g          249 t
ORIGIN      
        1 gtgctttgcc accagcacaa gagctcccca ttgcgtcgct tgaatcaccg cgtgtcacaa
       61 catctgagat tggcttgccc gtaccgagtg tgaccgaaca tacgactggt ttattgagtg
      121 gtaagtagtt cgcaacgccg aaaaccggaa aaagatcatc caatcggcaa aatctgtgga
      181 tgatattctt agcgtccttc caccgcccag atcgtatttt tctcatggac gtttgtcagt
      241 tgtcccagtc agatctgtat aatccccact atggataaag aagcaagaaa gcgaatcaag
      301 gacgcaatcg agaagaaaaa ccaggcgcga caaaagggac ttaaggaacg gagttcagac
      361 tctgcgaaga ccaaagaacg ccccggatat acagtgagac ccgaaaagaa gcgcggctaa
      421 aatgaggcag tagcccgacc ttcagggagg gctccgccta cattcatctt cccagcaaca
      481 cactaacagt gccgctttca ctgttgctcg tgacgaaatc catctttcca tcaccgttaa
      541 ggtcaccctc atcgagtcgc cacgcacctc gccccgtggg tatctttggg ccaggcgcga
      601 atctgcctcg accatcacct aacatcacga gcaagctatc gcctccggca gcgatcacat
      661 ccattttgcc atcgcgattt acgtcggcaa cgactgcatg aaagccttga tgcccgagat
      721 cgaaaggtga gccgccggct tcaacgaatc cacccctgcc gtcgccaagc attacggtca
      781 gctgattgag ttcatgatga gttgccacga tgtcaggttt acgatcgccg ttgaggtcgc
      841 tgataactgc aaaccacggc tcgcctgtgc gtagcggaag tatgctcgaa cgaaaacctc
      901 cccgtccgtc agacaagagc agcgtcaacg ctcgactcag cggcagttgt tgcgcgcgta
      961 atgggcctgt tgcagtggca gtggcgacga tatcaagctg gccgtcgcca ttgacgtcgc
     1021 cgacagcaag tggataaggg cttggaccaa ccgagaatgg cgagcccgat gcaattgtga
     1081 aggcgccacg cccatcgccg aaagcgatcg acacatcatt gtctgcatta ttgacagtga
     1141 cgaggtcgag tttgttgtca ctgttcatgt ccgctagagc cagtccatg
//
LOCUS       DATCGC010000269         1392 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_203736, whole genome shotgun sequence.
ACCESSION   DATCGC010000269 DATCGC010000000
VERSION     DATCGC010000269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1392)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1392)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1392
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_203736"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1169..>1392
                     /locus_tag="VIJ87_02620"
     CDS             1169..>1392
                     /locus_tag="VIJ87_02620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443363.1"
                     /translation="MRRHSLRTWVVSLIVVGVTGCSHFDTGTGNDSMSGLLNEMKAVP
                     RIVASAPAKTDDRNGDQEIVRLKGLLDQQR"
BASE COUNT          382 a          359 c          332 g          319 t
ORIGIN      
        1 cccccctctc tccacagagt ccctcctaga atctcaggca actataatca gaatacaccg
       61 acgtgtccaa cgggcgagtc cactgtcgac tacattcgtc tacgtaacgc ggacaggagg
      121 gcaaagcgaa cgcgagacac gccgttgcgt gtcaggcact ggttagtcga gaggcattgc
      181 ccactcgatc tgaaagagac tggaacgcac tcggcaggca ggttggcaga acggcctaac
      241 taaatcgaat acgacaccac tcgcaccgcc acttcgtcgc actctttggc gacgaatgac
      301 gcttactatg gtggcgtacc gcctgcaaag gcaggccaca gagcggacat tttgttttta
      361 ttgcctcttc gccgtttaca gcttctggct tttctcgatc atcgtcttcc atgtcggggg
      421 taacctaaat gataagagca taaatagccc gtcctaaaac atcactctaa tataaatcca
      481 gttagccaat ctcattagaa gagtttagca tgaaacttat gaccgccaac tttagagttg
      541 gctcaccagc attttgggta gaagtcgttt atccatgtat ttttgtaatg cagggattaa
      601 tatttgcgta cttcatctag atccatgtgt tcacaaagga ccagcgggtt atttgcttct
      661 catcctcacc ggttgcgcgg cgtcaaaaaa aggcgcgccg gatcaccgac aatcagagac
      721 ttcctcccga agcagataaa ggtctccgac caaagcgtcg gcatcaggac agcttcttgg
      781 aatgctacct atcaaggaaa acatattact cttcgggcga gtacagcgag aagagtcagt
      841 agcaaatggc gcttgcggca actagccaat cacatggatc aatcggcttc agcagcgaat
      901 gcattgcttt ggtcgccata gaagacagag agcaaggaac gagactagga caatcccctg
      961 agcctccacc gctagtgatc gccgacgcga tacaggattc aagacttgac cccataacgg
     1021 tgtgtgaaca gcctcacgtt cgtttccaaa aatactaagt gactggtaca acctgttagt
     1081 tttgacagtt cccgcctagg cagcgcctat ataacatcta taacatcctg acgttacctg
     1141 atccatagga ataaaaaggg aagattctat gagacggcac agccttcgga catgggttgt
     1201 atctctgata gtcgtaggag tcactggatg cagtcacttt gatacaggaa ccggcaatga
     1261 ctcgatgagt ggcctgttga acgaaatgaa ggctgtccca cgcattgttg catccgcccc
     1321 ggcgaaaact gatgaccgaa atggcgacca ggagatagtc agactcaagg gacttctcga
     1381 tcagcaaagg at
//
LOCUS       DATCGC010000270         1177 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_237588, whole genome shotgun sequence.
ACCESSION   DATCGC010000270 DATCGC010000000
VERSION     DATCGC010000270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1177)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1177)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1177
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_237588"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..558
                     /locus_tag="VIJ87_02625"
     CDS             <1..558
                     /locus_tag="VIJ87_02625"
                     /inference="COORDINATES: protein motif:HMM:NF012575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske (2Fe-2S) protein"
                     /protein_id="HEY5443364.1"
                     /translation="SSGSDKRIKNLDTRSVHGNGQLNNDGNESSEITRRTFCNELLLT
                     STGLVLAAKSVVANSPSPPDSVLAYPPMKIEGAEKLMPGSSLYFYYPTRNDPAVLICL
                     SEGEYAALSRKCSHAGCSVEFDGGKCLKCPCHLGQFDARLGYVMYGPPKRPLDQIVLQ
                     MRAGGQVWATGKSIGNNDERFARNA"
     gene            612..1124
                     /locus_tag="VIJ87_02630"
     CDS             612..1124
                     /locus_tag="VIJ87_02630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443365.1"
                     /translation="MRHSESKFQSRVVKISYLAVCCVLLLGGITNARSQTAKSRVVKF
                     RAEEIQQPIYREYRGVQLNMTMEEARAKLGNATFKSDELDFYVFSANEAAQIAYNAAH
                     KVVTISVDYTNGIGAPEPQTIGCVGLLQRSDGSKYQMIEYKAEGLWVSYNKSAGTVPV
                     VTVTLQTLSK"
BASE COUNT          330 a          267 c          320 g          260 t
ORIGIN      
        1 tcatcgggat ccgacaagcg aataaagaac ttggacactc gatcggttca cggaaacggt
       61 cagctgaaca atgatggtaa tgaatcatca gaaataaccc gccgcacgtt ttgcaatgag
      121 ctcttgttga cgtcgactgg actagttctg gcagctaaga gcgtcgtggc aaatagccca
      181 agtcctccgg attccgtact cgcttatcct ccaatgaaga tcgaaggagc ggaaaagttg
      241 atgccgggct cgagtctgta tttctactac ccgacacgaa acgatccggc ggtattgatt
      301 tgtctaagtg aaggtgagta tgccgcgctc agcagaaagt gctctcacgc cggatgttcg
      361 gtggaattcg atggaggaaa atgcctcaaa tgtccttgtc atttgggaca gtttgatgcg
      421 cggcttggat acgtaatgta tgggccaccg aaaaggcctc ttgatcaaat tgtgctgcaa
      481 atgcgagcgg gtggccaagt ttgggccacc ggcaaaagta ttggaaacaa tgatgaaagg
      541 tttgcacgaa acgcttagca gcgaactgat caagaactgc ggtggtcacc tatcttcgag
      601 gagataagaa aatgcgacac agtgaaagca aattccaatc gcgagtagtg aaaatctctt
      661 accttgccgt ttgttgtgtg ctgcttctgg gtgggataac aaatgcaaga agccaaacag
      721 caaagagcag agtcgtaaag tttcgtgcag aagagataca gcaaccgatc taccgagagt
      781 atcggggcgt ccaactcaat atgacgatgg aggaagcccg agccaaactt ggcaacgcga
      841 ctttcaaaag cgacgagctc gacttctatg tgttctcggc taatgaagcc gcgcagattg
      901 cgtacaacgc cgcgcacaaa gttgtaacca tctcagttga ttacaccaat ggcattggcg
      961 cgcccgaacc tcagacgatc ggttgcgttg gacttctgca aagatcagat ggctcgaagt
     1021 accaaatgat tgaatacaag gcggagggct tatgggtgtc ttacaacaag agcgccggaa
     1081 ccgtgccggt ggtgacggtt acgcttcaga ccttaagtaa ataggacggg aacctcctca
     1141 aacaatattc acgtcggaat gtgcccgagt cgagtgg
//
LOCUS       DATCGC010000271         2792 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_5432, whole genome shotgun sequence.
ACCESSION   DATCGC010000271 DATCGC010000000
VERSION     DATCGC010000271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2792
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5432"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..653
                     /locus_tag="VIJ87_02635"
     CDS             <1..653
                     /locus_tag="VIJ87_02635"
                     /inference="COORDINATES: protein motif:HMM:NF016736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HEY5443366.1"
                     /translation="RNGIEWNMNATTGKGAINVGDLGRTGPLISGFPQYTPIEVSNYI
                     YDKNIVDLQAALEAAKQVTTDILVHRARERYFKLDITVMYSSGSNPSAVNAAVKTAVD
                     NFFDSQYFGNVIQLSDILQAIHAVSGVDNVRWSSDTPGNTETTAPRIVETEREGAPRT
                     GSQYVINNDFFLKDDEMPRLATLNTEADIDGQVARVWSAVPGILIRTRAQNTWTSS"
     gene            653..2494
                     /locus_tag="VIJ87_02640"
     CDS             653..2494
                     /locus_tag="VIJ87_02640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443367.1"
                     /translation="MAVSGVPTYSEVVKQNYLIEPLTGAKDVFHYIENFPYEIYTKSA
                     DSHLYKFMRVLLGDAGVNWLRKNQLDARIALEEMGLDAFDLDSFFGNPFAFGRIADEI
                     YDVDYTGLITRDQDEQIKSQNARYRNRALDYINGARAGNTPMGMKLVAKAGLGHDVEI
                     VENYKYLFDTHSDDPLGVKYLGKTKSTEEMIVLPRREIGQSEEQTISFTIDPDFPISG
                     SFTLVYNSLDSANYPYTYDDGTGPVTTSSIPVTATSDQIRLALEAIPTIGAGNVEVTG
                     GPGPVLPWKVRFVRSLADRDVPELKSGSESLITPNGTPSFLKVTTSVGGREAIDEIVN
                     ISPKSLWNLQGAVDRIRSQTTIMTVGSSPGLRERNNWSDAYSSSEYTEVVRFVSGNPR
                     VIWPAPNAIYWVEQEVEKEAPRIAKDYQYHYTGWHNISQAVTSSNPLNANRVLADYDE
                     PLFITSATQTQNGAVNSFVNGVYPQDYTKLPGVPPIRYIGDQEWISVAQQDDEWIVID
                     FEQVSATNYLSFEIGRKPVTVNVYFDASDGGDESIWIPVTPVEPYSNYIAGNDLDNNG
                     WQTTTLTFTDSLGAIPFTRGLRLEIIRRESYTGPIEVRNLRAARNIG"
     gene            2497..>2792
                     /locus_tag="VIJ87_02645"
     CDS             2497..>2792
                     /locus_tag="VIJ87_02645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443368.1"
                     /translation="MAFTVKDWKDAPETTTPLSAAAMEDLETRLATYTDGSLTRNNTF
                     TGTADTSQAIMRVQGAPSTHLLIVNRTGAAPSNGNVLLVTGNDYSNVGPMDTTFG"
BASE COUNT          732 a          696 c          694 g          670 t
ORIGIN      
        1 ctcgtaacgg catcgagtgg aatatgaatg ccacgaccgg caagggcgcg atcaacgtag
       61 gagatttggg gaggactggt ccgctcattt ctgggttccc gcagtatacc ccgattgaag
      121 tctctaatta tatttacgac aagaacatcg tggacctaca ggctgccttg gaagccgcta
      181 agcaggtcac cacagacatt ctagtccacc gtgctaggga gcgctacttc aaactagata
      241 tcacggtcat gtatagctct ggctctaacc catcagcggt gaacgctgct gtcaagaccg
      301 ctgtagataa cttctttgac agtcagtatt tcggcaacgt aattcagttg tcagatatcc
      361 tacaggctat ccatgctgtg tcaggcgtag acaatgttcg ttggtcctca gacactcccg
      421 gtaacactga gactaccgcc ccgcgtatcg tagaaacaga gcgcgaaggc gctccacgta
      481 ctggttcaca gtatgttatc aataacgact tcttcctcaa ggatgacgaa atgcctcgtt
      541 tggctacgct caatactgag gcagacattg acggtcaggt agcgcgtgtg tggagcgccg
      601 taccgggcat cctcatcagg actcgcgctc agaacacatg gactagctcg taatggctgt
      661 aagtggtgtt cctacataca gcgaggtagt aaagcaaaat tacctcatcg agcctcttac
      721 gggggccaaa gatgttttcc attacatcga gaacttcccg tacgagattt ataccaaaag
      781 cgcagactcg catctgtaca agttcatgcg agtgctgctg ggtgacgccg gggtcaattg
      841 gctacgtaag aatcagctag acgcccgcat tgcgctagag gaaatgggtc tggacgcctt
      901 cgatctggac tcattctttg gtaacccgtt tgcattcggg cgcatcgctg atgaaattta
      961 cgatgtagat tatactggtc taataacaag ggaccaagac gagcagatca agtcacagaa
     1021 cgctcgttat cgtaaccggg cgcttgacta tatcaatggg gcgagggctg gcaatacccc
     1081 gatgggtatg aagttggtcg ccaaggctgg ccttgggcac gacgtagaga ttgtagagaa
     1141 ctacaagtat ctctttgaca ctcactctga tgatccgcta ggtgtaaagt atctaggcaa
     1201 gaccaaatct acagaggaaa tgatagtcct cccgcgccgt gagattggac agtcagagga
     1261 acagaccatt tccttcacca tagatcctga tttccccatc agtggtagct tcacattagt
     1321 ctacaatagt ctagactctg ctaactatcc atacacatat gacgatggta cgggtccagt
     1381 caccacgtcc tcaattccag tcaccgccac tagcgatcaa attcgtttag cattagaagc
     1441 catcccaact atcggtgctg gaaatgtgga agtcaccggt ggtcctggcc ctgtcctccc
     1501 ttggaaagta agattcgtta ggagcctagc ggatagggac gtgccagagc ttaagtcggg
     1561 gtctgagtct ttgattacgc ccaatggtac cccgtccttt cttaaggtga cgacaagcgt
     1621 aggaggccga gaggctattg acgagattgt caacatttca cctaagagcc tgtggaatct
     1681 acaaggcgct gttgaccgta tcaggtcaca gacgaccatt atgacagtgg gtagctctcc
     1741 cggtttgagg gagcgtaata actggtctga cgcttactca tcctctgagt atacagaggt
     1801 tgtccgcttc gtatctggca acccgcgagt catctggcct gcaccaaatg ccatctattg
     1861 ggttgagcag gaggtggaaa aggaagcgcc tcgtatcgct aaagactacc aataccatta
     1921 cacaggctgg cataacatca gccaagccgt tacttcgtct aatccactca atgccaaccg
     1981 tgttctggca gattatgatg agcctctgtt tatcacgtca gccacacaga cacaaaatgg
     2041 agccgtcaac agtttcgtca acggcgttta tccacaggac tacaccaagc taccgggcgt
     2101 gccaccgatt cgatacattg gcgatcaaga gtggatatct gtggctcagc aggatgacga
     2161 atggatcgtt atagactttg agcaagtcag tgcaaccaac tatttgagtt ttgagattgg
     2221 tcgtaagcca gtcacggtaa acgtgtactt tgatgccagt gatggaggcg atgaatcaat
     2281 ttggatacca gtcactccgg tggagccata tagcaactat atcgctggta acgacctaga
     2341 taataatggc tggcaaacca ctacgctaac attcacagac agcttaggag ctatcccctt
     2401 tacccgtggc ttacgattgg agattatccg tcgagaaagt tatacgggtc ctattgaggt
     2461 acgaaactta cgagcagccc ggaatattgg ataactatgg catttacagt taaagattgg
     2521 aaagacgctc ccgagactac cacacccctc tcagcggcag cgatggagga tttagagact
     2581 cgtctagcta catacacaga cggtagtctc acacgaaaca ataccttcac gggtactgcc
     2641 gataccagtc aagcgattat gcgagtgcaa ggcgctccta gtacccatct gcttatcgtc
     2701 aatcgtacgg gggctgcacc gtctaacgga aacgttctgc ttgtcacggg taacgattat
     2761 tctaacgtag gcccaatgga taccaccttt gg
//
LOCUS       DATCGC010000272         1099 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_103761, whole genome shotgun sequence.
ACCESSION   DATCGC010000272 DATCGC010000000
VERSION     DATCGC010000272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1099)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1099)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1099
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103761"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..897)
                     /locus_tag="VIJ87_02650"
     CDS             complement(<1..897)
                     /locus_tag="VIJ87_02650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443369.1"
                     /translation="MLFFQVLLLTGYSYVLATTAWIGVRKQTVLHISLLLLSLLYLPL
                     TFGNAGSISQRHNPELWLFAYLLIAIGLPIFLISTTSPLLQKWFTRTSDVSANDPYFL
                     FAVSNAGSLLALLSYPLILEPSLSLSTQKQIWVVSYVVFLVLTLGCVVALWKSSRREE
                     AETSPEVKGQESSIPLKQRLYWILLAFIPSSLMFGVTSYITTEIAPTPLLWTIPLALY
                     LVTFVLAFAGKNLLPERFTSMALCGLALLLTLVLAANATEPTTAIVLLHLSFFFVAAT
                     ICHHKLAGNRPPAKHLADFYLCV"
BASE COUNT          319 a          257 c          302 g          221 t
ORIGIN      
        1 cacgcacagg tagaaatcgg cgagatgttt cgcaggtggt ctattgccgg ccaacttgtg
       61 gtgacagatc gtcgccgcaa cgaagaagaa actcaggtgt agtagcacga tagccgtcgt
      121 cggttccgtt gcgtttgccg ccagcaccaa cgtaagcagc agtgctaatc cacaaagcgc
      181 catacttgtg aatctttcgg gaagtaaatt ctttcctgcg aacgccagga cgaatgtcac
      241 caggtagagg gccaacggaa tggtccatag cagaggtgtc ggggcgattt cagtggtgat
      301 gtaactcgtt acaccaaaca ttaagcttga aggaataaag gctaaaagaa tccaatacaa
      361 acgctgctta agtggaatgg aagactcctg gcccttcacc tcaggagaag tttcagcttc
      421 ctcccgtcgt gacgacttcc atagcgcaac cacacacccc agggtcaaaa ctagaaacac
      481 gacatagctc acaacccaga tttgcttttg agtagacagg ctaagactgg gttccagaat
      541 caatgggtag ctgagtaaag ccaaaagact cccggcatta ctaacagcaa acaagaagta
      601 cgggtcgttt gccgagacat cactcgtgcg cgtgaaccat ttctgtaata acgggctggt
      661 agttgaaatc agaaagatcg gtaagccgat cgcaattagc aggtaagcga acagccagag
      721 ttcgggattg tgtcgttgag aaatggaacc agcatttcca aaggtgaggg gcaagtaaag
      781 caatgaaagt agaagtaggc tgatgtgcag aactgtttgc ttgcgaactc ctatccacgc
      841 agttgtcgcg agaacgtagg aatatccggt caacagcagc acctggaaaa agagcatgca
      901 ggtggtccat accgacggcg tcccaccgag ccggggtaaa agcacctttg cgactatgag
      961 ctgcacccag aacagcagga gtgcactgag gaacattgtc gcgccaaaca acaaaactat
     1021 tggccgggag cgtagcgagg cgttacctga tgatgcgggc ggtgtatttg cggagggaag
     1081 gctcatgtat cacggaatg
//
LOCUS       DATCGC010000273         1245 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_370021, whole genome shotgun sequence.
ACCESSION   DATCGC010000273 DATCGC010000000
VERSION     DATCGC010000273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1245)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1245)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1245
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_370021"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            205..1173
                     /locus_tag="VIJ87_02655"
     CDS             205..1173
                     /locus_tag="VIJ87_02655"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone oxidoreductase"
                     /protein_id="HEY5443370.1"
                     /translation="MKAIQVSHTGGPEVLTLVDVPVPTPKPNEALVEIKASGVNFIDV
                     YFREGRYPTPLPFINGQEAAGIVTEVGSEVSDLKPGDRVAYTSSLGSYAEFAAVPAAR
                     LVKIPAELSFEQAAAAMLQGMTAHYLLNGSYKLASGETALIHAAAGGVGLLLVQMAKR
                     IGARVIATAGTEEKAQLAREAGADECIVYTQADFEAETKRLTDGKGVHVVYDGVGKAT
                     FDKDLEVLRPRGYLVLFGGSSGAVPPFDLIKLSQKGSLFITRPTLAHYTATREELELR
                     AGEVLGAIAKGELKLRIHKSYALAEAAQAHRDLEGRKTTGKLLLVP"
BASE COUNT          301 a          307 c          351 g          286 t
ORIGIN      
        1 attcgggtta cttagtggcg acgtcggcag gcgaggaagc ctgcccacgt ttggaattcg
       61 ggttacttag tggcgacgtc ggcaggcgag gaagcctgcg gtcccagaag agcgcgcccg
      121 ttagtgcagt gttactacta aagggccacg tcaaaactgg agaatctgag atctgaaatc
      181 tgagttttga gatagtattt gctcatgaaa gcaattcaag tcagccacac cggtgggcca
      241 gaggtgctaa ccttagtcga cgttcccgtt ccaactccaa aacctaacga ggcgctggtt
      301 gagatcaaag cttcgggcgt caacttcatt gacgtctact ttcgggaggg cagatatccg
      361 acgccgttac catttattaa tggacaggaa gcggctggca ttgtcacaga agttggttca
      421 gaagtttctg atctcaaacc tggagaccgg gtcgcttaca cgagttccct cggtagctac
      481 gccgagtttg cggcagtgcc cgcggcgcgt ctggtaaaga tccctgctga attgagtttt
      541 gaacaagccg cagctgcgat gttgcaggga atgacggcgc actatctgtt gaatggcagt
      601 tataaacttg cctccggtga aacagcgttg attcatgcgg cagctggtgg cgtcggatta
      661 cttcttgtac agatggccaa gaggatcggc gctcgcgtga ttgccacggc cgggactgaa
      721 gagaaagcgc aactcgcacg cgaagctggc gccgacgaat gcatcgtcta tacgcaggca
      781 gattttgaag cagaaacaaa acgattaacg gacggcaagg gcgtgcacgt tgtttacgat
      841 ggtgttggca aagcaacgtt tgataaagat ctcgaagtac ttcgaccacg tggatacctg
      901 gtgttgtttg gcggctcgag tggcgcagtt ccgccgtttg atttgatcaa gctttcccag
      961 aagggatcac tcttcatcac gcgcccaaca cttgctcact acacggctac tcgtgaagaa
     1021 ctcgaattgc gcgctggaga agttctcggt gctatcgcta aaggtgagct gaaactgcgt
     1081 attcacaaat cctatgcgct cgctgaagcg gcacaagccc atcgcgatct cgaaggcaga
     1141 aaaacgaccg gaaagttgtt gctggttccg tagtgggcct accaatcaga acaagtgcgg
     1201 caagacacct tccccacttg ttcttttcta aaggctcgct aacac
//
LOCUS       DATCGC010000274         2807 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_137090, whole genome shotgun sequence.
ACCESSION   DATCGC010000274 DATCGC010000000
VERSION     DATCGC010000274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2807)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2807)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2807
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137090"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1057)
                     /locus_tag="VIJ87_02660"
     CDS             complement(<1..1057)
                     /locus_tag="VIJ87_02660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443371.1"
                     /translation="MFELRPHQDEAVAKMHNGCILCGGVGVGKSHTAVAYYLKNEAPK
                     PVLVITTAKKRDKGDWQDLWAEVGMHKDPELTMGAVVIVDSWENITKYKELSGAFVIF
                     DEQRLVGTGAWVKTFYKIAAANRWIMLSATPGDNWLDYVPVFRANGFIKNITQFKEDH
                     VVQRWTGRYYKVIGYRQVPKLVRWRNSLLVDMPYDRHTTRHTHEVAVEYDKDLVRKLV
                     KDRWHVYENRPLTDASELFRVMRRVVYSDASRIQAIRKLLNSHPKLIVFYNFNFELEI
                     LRTLADDLSSSQQPRTILDSETSALIESPTRSDMDSENTFGDAATATRSTENGRSPIT
                     SVLSAEQQTTSNSDDWTY"
     gene            complement(1057..1188)
                     /locus_tag="VIJ87_02665"
     CDS             complement(1057..1188)
                     /locus_tag="VIJ87_02665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443372.1"
                     /translation="MDWEKIREVLIHVLEEKGGNIYWTSEDIADAQIAALKEQESFE"
     gene            complement(1197..1382)
                     /locus_tag="VIJ87_02670"
     CDS             complement(1197..1382)
                     /locus_tag="VIJ87_02670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443373.1"
                     /translation="MTVKELLDLFKDATEYDLQATVVFADSERGYQVATDVRMGEVTK
                     HEAEYYLDEGTHIAEIF"
     gene            complement(1385..1612)
                     /locus_tag="VIJ87_02675"
     CDS             complement(1385..1612)
                     /locus_tag="VIJ87_02675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443374.1"
                     /translation="MKYLLISCGCAECNFGGNPLIEAELFDTLEDAKSNSWIKNREWK
                     EHPQGGWYLSSGQGDDWIIEVPDIFVLIKKE"
     gene            complement(1625..1984)
                     /locus_tag="VIJ87_02680"
     CDS             complement(1625..1984)
                     /locus_tag="VIJ87_02680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443375.1"
                     /translation="MREIISWEGEEKLKGIFIEKDALTWDDKGIPVVWNYEMDRLPMG
                     RATDIRREPDGSITAEITLTDTEDAVHAGPLLVTGDVGCAMWAHEIVKTVKDGVDHVS
                     HGKIKAVGVVFRYQLAW"
     gene            complement(2174..2356)
                     /locus_tag="VIJ87_02685"
     CDS             complement(2174..2356)
                     /locus_tag="VIJ87_02685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443376.1"
                     /translation="MTKPPPIQICTREDHPARRHGHYGYGGRYWCADLRSPLLSEENL
                     GVIRNGYIVLFEKKES"
     gene            complement(2359..2541)
                     /locus_tag="VIJ87_02690"
     CDS             complement(2359..2541)
                     /locus_tag="VIJ87_02690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443377.1"
                     /translation="MTDEPLLGGPGSQPATLEEKREFRALCRRLPLLTQSELDRMQRI
                     EWGLTAKEYNILKFGE"
     gene            complement(2538..>2807)
                     /locus_tag="VIJ87_02695"
     CDS             complement(2538..>2807)
                     /locus_tag="VIJ87_02695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443378.1"
                     /translation="YVLVLEPIFTTQREIVLEGEYKQYETAPSIDKKWSDSKLVDVCN
                     KCGMDDAEIVIVGDTTGNKCKWCAELDNINYHLKYNGVRRFRKAA"
BASE COUNT          630 a          770 c          624 g          783 t
ORIGIN      
        1 tgtacgtcca gtcgtcgctg ttcgatgttg tttgctgttc cgcagacagg acagatgtga
       61 tcggactgcg tccattctcg gtggagcgtg tcgcagtggc tgcatcgcca aaggtgttct
      121 ctgaatccat atccgaacgc gttgggctct cgatcaaggc tgaggtttcg gaatcgagga
      181 ttgtgcgcgg ttgttgactc gatgataagt cgtccgccag tgtcctcagg atctccagct
      241 cgaagttgaa gttgtagaac acaatcagtt tcgggtgaga gttcaacaat ttccgaattg
      301 cttggattct tgatgcatcg gaatagacaa ccctcctcat cacacgaaag agttccgaag
      361 cgtccgtcag ggggcgattc tcgtaaacat gccatctgtc tttcaccagc tttcttacta
      421 agtctttgtc atactcaacg gcgacttcgt gagtatgacg agttgtgtgc ctgtcgtaag
      481 gcatgtcgac aagcagcgaa ttgcgccaac ggactagctt cggaacctgt cggtaaccaa
      541 tgaccttgta gtagcgacca gtccagcgct gaacgacgtg atcttccttg aactgcgtaa
      601 tgttcttgat gaatccattc gcacggaaga ccggaacata gtcaagccag ttgtcaccag
      661 gcgtggcact gagcataatc catcggttag ctgcggcaat cttatagaac gtcttgaccc
      721 atgctccggt tccaaccagt ctctgttcgt cgaagatgac aaatgcaccc gagagctcct
      781 tgtacttggt gatgttttcc catgaatcca caatcacgac agcacccatg gtgagctcag
      841 gatctttgtg catcccgact tctgcccaca gatcctgcca gtcgcccttg tcacgcttct
      901 tggctgtagt gatgacaagg acgggctttg gtgcttcgtt cttcaggtag tacgcgacag
      961 ccgtatggct cttaccaacg cccacacctc cgcagaggat gcagccgttg tgcattttgg
     1021 ccaccgcctc atcttggtgc ggtcgtagct cgaacactat tcgaatgact cctgttcctt
     1081 gagagctgct atctgagcgt cagcgatatc ttcgcttgtc cagtagatgt ttccgccttt
     1141 ctcttcgagc acatgaatca agacttctcg aatcttttcc cagtccatct cactccttag
     1201 aagatctcag cgatgtgtgt tccctcatcg aggtagtact cggcctcatg tttggtaacc
     1261 tcacccattc gaacatccgt agctacttga taccctcgtt cgctatcagc gaataccacc
     1321 gtagcctgaa ggtcgtattc agttgcgtct ttgaaaaggt caagaagctc ttttactgtc
     1381 atagctactc tttcttgatc aacacaaata tgtcaggtac ttcgatgatc cagtcatcgc
     1441 cctgtcccga acttagatac caaccgcctt gcggatgttc tttccactca cgatttttga
     1501 tccatgaatt actcttggcg tcttccagag tgtcaaagag ttcggcttca atgagtggat
     1561 tgcccccgaa attgcattcc gcacatccac acgatatcaa caggtatttc atgtttgctc
     1621 cttatcacca agcaagttgg tatctaaaga caacaccaac cgccttgatc tttccgtggc
     1681 tgacatgatc tactccgtct ttgactgttt tcacaatttc gtgggcccac atagcacaac
     1741 ccacgtcacc cgtaacaagc agtggaccag cgtgcactgc gtcttcggta tctgtcaatg
     1801 tgatttcggc agtgatgctt ccgtcgggct cgcgtcgaat atctgttgca cggcccatcg
     1861 gcaaccgatc catctcatag ttccagacaa caggaatgcc tttgtcatcc catgtcaatg
     1921 cgtccttctc gatgaagatg cccttgagtt tctcttcgcc ttcccagctg atgatctctc
     1981 tcatagttgc tcctttctca aaacccgctt cttcttgtac tttttaaaga gccagacgcc
     2041 tacatcccca cagccgcctc cgatgacccc accgatgaat gagatccata caggactcac
     2101 acgattctcc ctactacgaa tccgatgatc atacagaccc atccgaatgc cacgatttga
     2161 atctcgagtt tggtcatgat tccttcttct cgaatagaac gatgtagccg tttctgatta
     2221 cacccaggtt ctcttcgctc aacagaggag aacgaagatc ggcgcaccag taacgacctc
     2281 cgtacccgta gtgaccgtga cgtcgagccg gatgatcttc gcgagtacag atctggatag
     2341 gcggtggttt tgtcatgatt actctccaaa cttcagaatg ttgtactctt tcgcagtgag
     2401 tccccactcg attcgttgca tacgatcgag ttcactctga gtgagaagag gaagccgtcg
     2461 acacaatgct cgaaactctc tcttctcttc gagagttgca ggctgggatc cgggcccacc
     2521 cagtaaaggt tcgtcagtca tgctgccttc ctgaatcgtc gaacgccgtt gtacttcaaa
     2581 tggtagttga tgttgtctag ctcagcacac cacttgcatt tgttacctgt ggtatctccg
     2641 acaatcacaa tttcagcatc gtccatacca cacttgttac agacatctac aagctttgag
     2701 tcactccact tcttgtcgat tgacggtgct gtctcgtatt gcttgtactc accttcgagg
     2761 acgatttctc tttgtgtagt aaagataggt tcaagaacga gaacata
//
LOCUS       DATCGC010000275         1256 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_436626, whole genome shotgun sequence.
ACCESSION   DATCGC010000275 DATCGC010000000
VERSION     DATCGC010000275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1256)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1256)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1256
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_436626"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1109)
                     /locus_tag="VIJ87_02700"
     CDS             complement(<1..1109)
                     /locus_tag="VIJ87_02700"
                     /inference="COORDINATES: protein motif:HMM:NF037660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5443379.1"
                     /translation="MGDPRNALVCLTEIRELLKDTGDRAKESSFLNNICVVYENLAEY
                     AKALEACNQSLSIRRALNDERGTAPVLNSMGNLYGNMSQYESALDSYTQSQAIYEKFG
                     NENGQAIEFNNLGWLYAALGDYEKAIEFYKRSLELFRKLGNQFRQGGTLSNIAANYAD
                     LEDFKKALEINLEALKIRIAANDVEGEAVTYNNIAGCYSHLGQKQEALQYYKRAVDIH
                     RTRNPRQLATALRNMGGVYRELGDNQKATECLNEAFEITRRIADPSGEAATLSLLAQV
                     ERDQHKLLDAKRHIEATLASVESLRVSLKDQKLRTSFFASISKYHDLYIDVLMRLHKE
                     NPAGGFDVAALKASENARARSLLESLMEAGAEIGRG"
BASE COUNT          294 a          315 c          290 g          357 t
ORIGIN      
        1 ccacgaccga tttcagcgcc ggcttccatt aaggattcca ggagcgagcg cgcccgcgcg
       61 ttttcacttg cctttaaagc tgcgacgtca aatccacctg cgggattctc tttgtgcagt
      121 cgcattagca catcgatata caagtcatga tacttgctaa tagacgcaaa gaaagacgtt
      181 cgtagtttct gatccttaag actgacacgt aaagattcaa cggaagctag tgtcgcttca
      241 atgtggcgtt tggcatcaag caatttgtgc tggtcacgtt cgacctgggc gagtagtgac
      301 aaggtcgctg cttctccaga aggatcagct atgcgcctgg taatctcaaa cgcctcgttt
      361 aggcactcag ttgctttctg gttgtcacct aattcgcggt agacgcctcc catgtttctt
      421 aaggctgtag caagttgccg gggatttctc gtgcgatgaa tatcaaccgc ccgcttgtaa
      481 tactgaaggg cctcttgttt ctggccgaga tgtgaataac agcctgcgat gttgttgtag
      541 gtgacggctt caccctcgac atcatttgcg gcaattcgga tctttaacgc ctccagatta
      601 atctccaatg ccttcttgaa atcttccagg tcggcatagt tagcggcgat attgctcagc
      661 gtccccccct gacggaattg attgcccagc ttccgaaata gttccagtga acgtttatag
      721 aattcaatcg ccttttcata atctcccaac gcagcatata gccagccaag attattgaac
      781 tcgatagcct ggccattctc gttaccgaac ttttcgtaaa tcgcttgtga ttgagtatac
      841 gaatccaggg cactctcgta ctggctcatg ttcccatata agttacccat actgttgaga
      901 actggggcag tgccacgttc atcgttcaac gcccgcctga ttgaaagcga ttgattgcaa
      961 gcctcaagtg cctttgcgta ctccgcgaga ttttcgtaaa ccacacaaat gttattcagg
     1021 aatgacgatt cctttgcccg gtcgcccgtg tccttgagca actctcgtat ctcagtaaga
     1081 cacacaaggg catttcgtgg atcgcccatg ctttgatatg aaattgcaag aaggttaagc
     1141 gtgataatag taccggtgcg gtcatttatc tgttttcgga tcaatagtga ttgattgtag
     1201 aggtcaactg actttttcct gtcgtcgaat tcataatgag ctcggccgag cgtatc
//
LOCUS       DATCGC010000276         1633 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_137099, whole genome shotgun sequence.
ACCESSION   DATCGC010000276 DATCGC010000000
VERSION     DATCGC010000276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1633)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1633)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1633
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137099"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1240)
                     /locus_tag="VIJ87_02705"
     CDS             complement(<1..1240)
                     /locus_tag="VIJ87_02705"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HEY5443380.1"
                     /translation="MSENTLTITDNRTGKQYQVGIENGTIKAMDLRQIKVSDGDFGLM
                     TYDPAFMNTASCKSRITFIDGEKGILEYRGYPIDQLAEKSTYLEVAYLLLHGELPNES
                     QLQTWTSNITYHTFINENIKTVIDGFHYNAHPMGMFEAMLGALSTFYPDAKDIFNVEC
                     RWKQIHRLIAKVPTIAAFAFRHRIGMQYSYPDNDLTYEGNFLNMMFKTTELKYKPNPV
                     LERALNVLYILHADHEQNCSTNAMRSIGSAQTDPFSALAGAAAALYGPLHGGANEMVL
                     RMLKEIGSVDKVPDYIKRVKAGEFRLMGFGHRVYKNYDPRARIIKQVAYEVFEVTGKD
                     PVLDIALELERIALEDEYFVKRKLYPNVDFYSGIIYQAMRFPVDMFPVMFAIPRTSGW
                     LAQWVELLEDEDQKIARPRQV"
     gene            complement(1449..>1633)
                     /locus_tag="VIJ87_02710"
     CDS             complement(1449..>1633)
                     /locus_tag="VIJ87_02710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443381.1"
                     /translation="ARIRAADSLVKRSTKPSPCVWGEAKEGWTPEANWWYFVVPKKAS
                     RELLDDLQRSGTDFGV"
BASE COUNT          388 a          428 c          406 g          411 t
ORIGIN      
        1 agacctggcg agggcgagcg atcttctgat cttcgtcttc gagtaactca acccactgcg
       61 ccagccagcc cgacgttcgc gggatcgcaa acatcaccgg gaacatgtct accgggaaac
      121 gcatcgcttg atagatgatg ccggaataga aatcaacatt cggatagagc ttgcgcttta
      181 cgaagtactc atcttccaaa gcaattcgct ccaactccaa cgcgatatca aggaccgggt
      241 ccttacccgt cacttcaaac acctcatacg caacttgttt gatgatgcga gctcttgggt
      301 cgtagttctt ataaacacga tgtccgaatc ccatcagtcg aaattcaccg gccttaactc
      361 gcttgatata gtccggcact ttatcaactg agccaatttc tttcagcatg cgcaacacca
      421 tctcgtttgc gccaccatgg agtgggccat acaacgcagc tgccgctcca gccagcgccg
      481 agaacggatc tgtttgagcg ctgccaatgc tgcgcatcgc gttggtactg caattctgtt
      541 cgtgatccgc gtgcagaata tagagaacat ttagagcgcg ttcgagcacc gggttgggtt
      601 tgtacttcaa ctcggtagtc ttaaacatca tgttgagaaa attaccttcg taggtcagat
      661 cgttatccgg atacgagtac tgcattccga tgcgatgcct aaaagcaaac gccgcaatgg
      721 taggaacctt tgcgatcaac ctgtgaatct gtttccagcg acactcgaca ttaaagatgt
      781 ctttagcatc cgggtagaac gtcgacaacg caccgagcat cgcttcaaac atgcccattg
      841 gatgagcgtt gtagtgaaaa ccgtcgatga ccgttttgat gttctcgtta ataaaggtgt
      901 gataagtgat attgctggtc cacgtttgaa gttgagactc gttggggagt tcaccgtgca
      961 ataggagata agcaacttca aggtacgtgc tcttctcagc cagctgatca atgggatagc
     1021 cgcggtattc gagtattcct ttctcgccgt cgatgaacgt aatgcgactc ttgcaggagg
     1081 cggtgttcat gaacgccggg tcgtaagtca tcaggccaaa atcgccgtcc gagactttta
     1141 tctggcgcag gtccatggcc ttgatcgtcc cgttctcaat tcccacctga tactgcttcc
     1201 cggtcctgtt gtcagtaatt gttaaggtgt tttcactcat gagtcttctc ctgaagggta
     1261 ccgacgcgct ggggttgcgt cctgagttca gagattaacg cggggcggaa tggtaatcaa
     1321 acggactgcg acattgggat ttcgtgtcat agatcggttc tcgcaaacga tcaactagac
     1381 caagccgcaa tcccagcgga aatctcgcag gcgaagtgat ctgaattaag gactcattga
     1441 gtgggacgtc acacgccgaa gtctgtgcca ctccgttgca agtcatccag caattctctg
     1501 ctggctttct ttggaacaac gaagtaccac cagttggcct ccggcgtcca accttctttt
     1561 gcttcacccc aaacgcacgg cgaaggtttg gtcgatcgct taaccaggct gtcggctgct
     1621 cgaatgcggg cga
//
LOCUS       DATCGC010000277         1115 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_70476, whole genome shotgun sequence.
ACCESSION   DATCGC010000277 DATCGC010000000
VERSION     DATCGC010000277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1115
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70476"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..732
                     /locus_tag="VIJ87_02715"
     CDS             <1..732
                     /locus_tag="VIJ87_02715"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY5443382.1"
                     /translation="QQQQITFFSDDDSPVSVGVIFDVSGSMSGDKVKRARDALSKFIQ
                     TSHDSDEYFLIAFNSRAQLLLDRTRDGDSVLNKLTFVETKSQTALYDACYLGVEKVQR
                     GTHPKRALLLISDGQDNDSRYTFNELRKLLKESDVVLYAIGILSGNDAGSSLGMEGQG
                     VLDELSGVSGGKAFFPHSAAEMDDIFEQIALELRHQYSIGYKPDQFNNDGKWHRVKVK
                     VTPPRGLPRLFVRSKEGYYATAGTR"
BASE COUNT          265 a          305 c          290 g          255 t
ORIGIN      
        1 caacagcaac agattacttt ctttagcgac gacgactctc cagtttccgt cggcgttatc
       61 tttgacgtct cgggctcgat gagcggcgac aaggtcaaac gcgcccgtga cgccctgagc
      121 aagtttattc aaacgagtca cgactccgac gaatacttcc tgatcgcctt caattcccgg
      181 gcacagctgc tactcgatag aacacgagac ggcgactccg tactcaacaa actcaccttc
      241 gttgagacca agagtcaaac cgctctctac gacgcctgct atctcggagt cgaaaaagtt
      301 caacgaggca cccacccaaa gcgcgcgttg ttattgatta gcgacggcca ggacaacgac
      361 tcacgttaca cgttcaatga attgcgtaag ttgctcaaag agtcggatgt tgtgctctac
      421 gccatcggca tcttgagcgg caatgatgcg ggcagctcgc tcggcatgga aggccagggc
      481 gtgctcgacg aactttccgg agtttctggt gggaaagcct tctttccgca ttccgcagct
      541 gagatggacg acatcttcga acagattgcg ctggaactgc ggcatcaata ctcaatcggc
      601 tataagcccg accagtttaa taacgatggc aagtggcacc gcgtgaaagt gaaagtgacg
      661 ccacctcgtg gccttcctcg attgttcgtt cgctccaaag aaggctacta cgcgacggct
      721 ggaacacgtt aaagtcgaag gttagttccc gacaaccggc aacgcagagt tagttgagag
      781 gcatctttct aacgtgtgcg cttgccgcat tgattgcgac ctgtttgccc cagcacgcga
      841 gcagtgatcg attgatatgt gacccccaaa agcgctccgg tcccaattga cgggttcacg
      901 gagcgtttcc gttagagccg gggcttgggc gaaaatggtt ttcgcagccg attaaggttt
      961 tattcaagag acgcattaat gaaaagattt gcagacaacg aacttttgct tcgccgttca
     1021 gcaatcattt tgctggcagg tctgattatt tcggcgctag tcctgggttc cgctttcgcg
     1081 gccgggcaga accgaccgcg cagcactcaa agcac
//
LOCUS       DATCGC010000278         1456 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_170646, whole genome shotgun sequence.
ACCESSION   DATCGC010000278 DATCGC010000000
VERSION     DATCGC010000278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1456)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1456)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1456
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_170646"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(166..954)
                     /locus_tag="VIJ87_02720"
     CDS             complement(166..954)
                     /locus_tag="VIJ87_02720"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY5443383.1"
                     /translation="MTTDLFCRRVEVVGVNRIVAVAYVFCTSTTAMNVTDWNAIADAY
                     SEINAPQGRAVLGFIREKLTKLQPRRLFDYGGGDGKFALFCAESLSQTEIVTYDPSPK
                     MTSLARSLCADFKQIRVIEAIKEVQSGIFDVVTFNGVWMCLATRETCLDALSATARLL
                     RPNGSLIASVTHPCFRTCKFPNYSTDFSDRDYFNDGTLFNVTICEDTRELHIVDTHWS
                     LTAMISQLNESGFAIKNLYELPQSTSGSSQRDASLWLVIVARKL"
     gene            complement(951..>1456)
                     /locus_tag="VIJ87_02725"
     CDS             complement(951..>1456)
                     /locus_tag="VIJ87_02725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443384.1"
                     /translation="PLPEKGVQAFIARLRPWAEADDGKPVYMFNLIRFFPRMQMFPGA
                     PEFTGTPEQANAHYERGLLWLWLSHASYPTLIGAPQARNLLDMQPERTWENMTVVRYP
                     SRRTFLKLISHPTYARVAGYKFIAAELDLVPVSSGTIIPDLRWLVGAGLIIIFLLLGW
                     LHGTLLG"
BASE COUNT          375 a          367 c          391 g          323 t
ORIGIN      
        1 gacttccaaa gtgaaggtgc ggatgtgaag cgttggaagg ttggagcgtt gaagcgtcga
       61 cgcgttgggg cgttagggcg ttacgtcatt acattgggtt actctcgagc gatactgaag
      121 aaagaaagaa ggaacaggcg aaacgctttc ctttagtcac aggcttcaga gcttccgagc
      181 gacgattacc aaccaaaggc tggcgtcacg ttgacttgat ccgctggtcg actgcggcaa
      241 ctcgtagagg tttttaattg caaatcctga ttcatttaac tgcgaaatca tcgccgtcag
      301 gctccaatga gtatcaacaa tgtgaagctc gcgcgtgtcc tcgcagatcg tgacattgaa
      361 caatgtacca tcattaaaat aatcgcggtc actaaaatcc gtggagtagt tcggaaactt
      421 acaggtgcga aaacatggat gcgtcaccga tgcgatcagg gagccattcg gccgaagaag
      481 cctagcagtc gcggaaagcg cgtctaaaca agtctcgcga gttgcaaggc acatccagac
      541 tccgttaaac gttacgacat caaatattcc ggactgaact tcttttatcg cctcaatgac
      601 gcgaatctgc ttgaaatcgg cacataaaga ccgcgcgaga gatgtcatct ttggcgaagg
      661 gtcatacgta actatttctg tttgcgacaa actctccgcg caaaagaggg caaactttcc
      721 gtcaccaccg ccgtaatcga acaaacgtct cggttgaagc ttcgttagtt tttctcgaat
      781 aaagcccagg acagcgcgtc cttgcggagc gtttatctca gaatatgcat ctgcaatcgc
      841 attccagtca gtgacgttca ttgcggtggt ggacgtacaa aatacgtagg cgaccgcgac
      901 gatacggttc acgccaacga cttcaactcg tcgacaaaac aagtcggtgg tcatcccaac
      961 agcgtgccgt gtagccaccc gagaagcagg aagatgatga ttaagccagc gcctactaac
     1021 cagcgaaggt cggggatgat cgtgccactt gaaaccggca ccaggtccag ctccgcggct
     1081 atgaacttgt aacccgcaac tcgcgcatag gtggggtggg aaatcagttt taaaaatgtg
     1141 cgccggctgg gatagcgcac aacggtcata ttttcccacg ttctctctgg ctgcatgtcg
     1201 agcaggtttc tggcttgagg agctccgatg agcgtcggat aagaagcgtg actcaaccac
     1261 agccatagga gacccctttc atagtgtgcg tttgcctgtt cgggcgttcc tgtgaactcc
     1321 ggcgcgccgg gaaacatctg catccggggg aagaaacgga tgaggttaaa catatagacc
     1381 ggcttgccat cgtccgcctc agcccatggc cggagacggg caatgaacgc ctgaacgcct
     1441 ttctcaggca gtggta
//
LOCUS       DATCGC010000279         1640 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_436686, whole genome shotgun sequence.
ACCESSION   DATCGC010000279 DATCGC010000000
VERSION     DATCGC010000279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1640
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_436686"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..654
                     /locus_tag="VIJ87_02730"
     CDS             <1..654
                     /locus_tag="VIJ87_02730"
                     /inference="COORDINATES: protein motif:HMM:NF016826.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016861 - intramolecular oxidoreductase
                     activity, interconverting aldoses and ketoses [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-deoxy-glucuronate isomerase"
                     /protein_id="HEY5443385.1"
                     /translation="GLICLKGTATVITGDRSFDLEQYDTVYVPRDSDVEVKPGGSGCD
                     LAEVSAPVAKHYPVQFVSYKDVRQNPKLHLIAGEPPTQRDLNVLIGTNVEAGRIMAGV
                     TFSTPGNWTSWPPHEHSKLLEEAYLYIDMPAPSFGVQFVYTDPNDPELVQVVREGDCV
                     LMPQGYHPNVAAPGGQINFLWMMAAITEGDDRQFGVVNVQPEYASGGSGLEAVSDKK"
     gene            666..1055
                     /locus_tag="VIJ87_02735"
     CDS             666..1055
                     /locus_tag="VIJ87_02735"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEY5443386.1"
                     /translation="MSTTSPDDQANGNGHQNGLPQHLNWSTIPVEQVSEGIQRQMFIG
                     NRMMICRFRFKPFLVTPEHDHPHEQMTIVEQGKVRFFVEGKEQIATAGDVLHFPSKCW
                     HGATMMDEEVVLIDIFSPLREDFLSSR"
     gene            1163..>1640
                     /locus_tag="VIJ87_02740"
     CDS             1163..>1640
                     /locus_tag="VIJ87_02740"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY5443387.1"
                     /translation="MILDKFKLTDRVALVTGAATGLGAEIAIGLAEAGAQVACHGNSR
                     SPEETCNKIISAGGVAHPVTGDLSQKETAKQLIDDVLNRFGRIDILVNNAGTIRRSPA
                     VEYSEDDWATVIEVNLSSVFRLSQLAGRSMIDSDRGGKIVNIASLLSFQGGITVPAY"
BASE COUNT          395 a          408 c          441 g          396 t
ORIGIN      
        1 ggtttgatct gcttgaaagg aactgcgact gtcatcacag gagatcgatc atttgatctc
       61 gagcaatacg acactgttta tgtgccgcgc gactctgatg tcgaagttaa gccgggaggt
      121 tcaggttgcg atctcgctga agtttctgca ccggttgcca aacactatcc ggttcagttc
      181 gtgtcctata aagacgtgcg tcagaatcca aagctgcacc tgattgccgg cgaaccaccg
      241 acccagcgag atctcaatgt gctgattgga actaacgttg aagctggacg aatcatggcg
      301 ggggttacgt tctcgacccc tggcaactgg acttcctggc ctcctcatga acactcaaaa
      361 cttttggaag aggcttatct ctacatcgat atgcctgcgc cgtcgttcgg cgtgcagttt
      421 gtttataccg acccgaacga tccggaactt gtgcaggtcg tgcgcgaagg cgactgtgta
      481 ctgatgcctc agggatacca tccgaatgtc gcagcaccgg gcggtcaaat taactttctc
      541 tggatgatgg cggcgatcac ggagggcgac gatcgtcagt ttggcgtcgt aaacgtgcag
      601 ccagagtatg cctccggtgg ttcaggtctt gaagccgtaa gcgacaagaa gtaaagttct
      661 cggccatgtc cacaacttcc ccagacgatc aagcgaacgg aaacggtcat cagaatggtc
      721 tacctcaaca cctgaactgg tcgactatcc cagtcgagca ggtgtctgaa ggtattcaac
      781 ggcagatgtt catcggtaat cgaatgatga tctgtcgctt tcgcttcaag ccatttcttg
      841 taactccgga gcacgatcat ccccacgagc agatgacaat cgtggagcag ggaaaggtcc
      901 gtttctttgt cgaaggtaaa gaacagatcg cgactgcggg cgacgtgctg catttcccgt
      961 cgaagtgttg gcacggcgcc acgatgatgg atgaagaggt tgtgctaatc gatatcttct
     1021 caccgctgcg cgaagatttt ctaagcagcc gttagcaatg tccgatatgc tttagcttgt
     1081 cgtgactttt caagagcgtt actaaaaacc agagacttct aactgattta aacgacaagc
     1141 tgaagcgtat cggacaatca acttgatact cgacaaattc aaacttacag atcgagttgc
     1201 gcttgtgacg ggtgcagcaa cggggctagg cgctgaaatc gcgattggtc tcgccgaagc
     1261 gggtgcgcag gtggcttgtc acggtaacag tcgctcacct gaggaaacgt gtaacaagat
     1321 catttcggct ggcggcgtcg ctcatccagt gacgggcgac ctctcgcaaa aagaaactgc
     1381 caaacaactc atcgacgatg ttctcaatcg gtttggccgg atcgatatac tcgtcaacaa
     1441 cgccggaacg attcgtcgct cgccggcagt cgagtattca gaggacgact gggctacggt
     1501 gattgaagtt aatctttcga gtgtctttcg tctgtcacag cttgccggca gatcgatgat
     1561 tgacagcgac cgtggaggaa agatcgtcaa tattgcttca ttgctttcct ttcaaggtgg
     1621 aatcacggta cccgcgtatg
//
LOCUS       DATCGC010000280         1779 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_270341, whole genome shotgun sequence.
ACCESSION   DATCGC010000280 DATCGC010000000
VERSION     DATCGC010000280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1779)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1779)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1779
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270341"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..580)
                     /locus_tag="VIJ87_02745"
     CDS             complement(<1..580)
                     /locus_tag="VIJ87_02745"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEY5443388.1"
                     /translation="MKAFKAEHPITHFYAFDNFVVDAGKSVLSREGQSVPLTPKAFEI
                     LLVLVRNPGRVLKKEELIEEVWPDAFVDENNLPRNISSLRKALGEGPAEHKYIVTLPG
                     QGYRFVAEVRHLDSPNGAPTRALLESVPLEPTKLEPTITVHEDVVKSEPATRKPRSIS
                     LLVVCACLALALAISGYFLAQRWLHSSQPTTAQ"
     gene            1152..>1779
                     /locus_tag="VIJ87_02750"
     CDS             1152..>1779
                     /locus_tag="VIJ87_02750"
                     /inference="COORDINATES: protein motif:HMM:NF016497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 43 glycosylhydrolase"
                     /protein_id="HEY5443389.1"
                     /translation="MKKILFTTLCLLVTVSLAHDSRVFALDGEIRIHDPSTVIWCNGK
                     FYTYGTGGISLVSDDGWTWRRGPSLPRRGVAPDVIHIGDRYFLYIAANSGPTKADINL
                     LTNKTLDPDSPDYKWEEGGVVASSDGIEDCNAIDPGVLLDPTTGRLWLTYGSYFGYIR
                     LVELDPSSGKRLKPNEKPRNIAINGEASIMIYHEGWYYLLVTHGSCCRG"
BASE COUNT          440 a          445 c          443 g          451 t
ORIGIN      
        1 gttgcgccgt cgtcggttga cttgagtgca accatcgctg cgccagaaag taaccgctga
       61 tcgcgagtgc caaagccaaa caggcgcaga caaccaacaa actgatcgag cgcggctttc
      121 ttgtagctgg ctccgacttg accacatctt catggacagt gattgtaggc tcaagtttcg
      181 ttggctcgag aggaacactt tccaacagag cgcgagtggg tgcgccgttc ggactatcta
      241 ggtgtctgac ctctgcgaca aagcgatacc cttggccagg aagagtgacg atgtatttat
      301 gttctgcagg tccttctccc aatgcctttc gaagagaaga gatgtttcga ggcaagttgt
      361 tctcgtcgac gaaagcgtca ggccagacct cttcaatcaa ttcttccttc tttaaaacgc
      421 gcccaggatt ccgcaccaac accagcagga tttcaaaagc tttcggcgtc agcggtactg
      481 attgtccttc gcgcgacaac acacttttgc ccgcgtcgac aacaaagtta tcgaaggcat
      541 agaaatgcgt tattggatgc tcagccttga aggctttcat aaatcttcag ggattatcaa
      601 ctgcgctcgg tttgctcgtg ccgaagcctg aatcaatccc atgtctgatc aaaccgactc
      661 aaacattcag gaattttcag acaacccaaa agactttcta accaacgatc gacgttaatt
      721 aggcaattag taaaccgcac gctttcgact agtgaggatc tatctacgtc gaactccagt
      781 ggttagattt cattcaactc acttggtagc tacaactgtc cggctcatga aggagtgggg
      841 tctgttctct atcaaggcta tgaagttgac ggctacgagt gtgcaccaga accaaattcg
      901 caaattactt gattagggtc gtttggtgcc tcttttgggt ggccgaattc tactttaagt
      961 agttgaagcg gtaaagcaag tctggtcgtc aagcgaacaa aatggtcaat gtctaaaatt
     1021 aggggaatac ggtggtggat gattgggcta atcatgctca gctctatcat caactacctc
     1081 acccgcagta cccttgcgga cgctgcgcgg tcgaggtctg agtgcgaatt taactggctt
     1141 gcatgactcc catgaaaaag atccttttca caacgctttg cctcttggtg accgttagct
     1201 tggcccacga ctcacgagtc ttcgcgctcg atggtgagat taggattcat gatccatcca
     1261 cagtcatttg gtgcaatggc aagttctaca cttacggtac aggcggtatc tcactagtgt
     1321 cagatgacgg ctggacctgg cggcgtgggc cttcactccc gaggcgcgga gtagctcccg
     1381 acgtgattca catcggagac cgttactttc tatatatcgc tgccaacagc gggccaacga
     1441 aggctgatat caacctgctc acaaacaaaa ctctcgatcc ggattcacct gactacaagt
     1501 gggaagaggg cggtgttgta gcgtcctctg atggaatcga ggattgcaat gcgattgatc
     1561 ctggcgtctt acttgatccg actaccggca ggttgtggct cacatatggt tcgtacttcg
     1621 gttacatcag gctagttgaa cttgatccca gcagcggcaa gcgccttaaa ccaaatgaaa
     1681 agcccaggaa cattgcgatc aacggcgaag cttcaatcat gatttatcac gagggttggt
     1741 attacctctt ggtaacacac ggtagttgtt gtcgcggcg
//
LOCUS       DATCGC010000281         1131 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_170699, whole genome shotgun sequence.
ACCESSION   DATCGC010000281 DATCGC010000000
VERSION     DATCGC010000281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1131)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1131)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1131
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_170699"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1080
                     /locus_tag="VIJ87_02755"
     CDS             <1..1080
                     /locus_tag="VIJ87_02755"
                     /inference="COORDINATES: protein motif:HMM:NF013625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding protein"
                     /protein_id="HEY5443390.1"
                     /translation="LYLGTNLGVYRSSDRGVSWSPVWAPNSPEPTKKPVVKRGTKAVI
                     RKPVTVQRQTAVSEETVSQVQEALNNAGYHLGIPDGKGGPITIAALKRFQGDRHLPVT
                     GKFDDITLSALGVSKSNQGGNDGDTTDLILADAVNALVHTVDSETQKPGFLAATNTGL
                     FRSFDVGKGWQRLSYGPNQDPRTTCLSTNLREPNTIWAGTPASGILVTHDGGKSWHQV
                     AGIPQDFPVNTIVQDPQRPDYIYVGTKQSFYMSHDGGLSFTRRGGNLPFGDFTSILVN
                     SRNGDEIFTGNAYQTGEIGGGVYRTINGGVTWARIDPKQRRLPSQRIWALAFDSQDQN
                     VLFVGSHSAGVYVVPRTSDNLSSSQ"
BASE COUNT          270 a          277 c          308 g          276 t
ORIGIN      
        1 ctttatctcg gcactaatct tggtgtgtac cgctcttccg atcgaggggt ctcatggtca
       61 cctgtctggg cgccgaactc tcctgaacca accaagaagc cagtcgttaa gaggggcaca
      121 aaggcggtta ttcgaaagcc ggtgacagtg caacgccaaa cagctgtttc ggaagaaacg
      181 gttagtcaag tgcaagaggc gctcaacaac gctggttatc atctgggtat tccggatggc
      241 aaaggtggtc caatcactat cgcagctctg aaacgttttc agggcgatcg acatttaccg
      301 gtcacgggaa agtttgacga tataactttg tcggcgttag gggtgtcaaa gtcaaaccaa
      361 ggcggcaacg atggtgatac aactgatcta atccttgccg atgcggttaa cgcgttggtc
      421 cataccgtcg acagtgaaac acagaagccg ggattcctgg ctgctacaaa cactggactg
      481 tttcgcagct ttgatgtcgg caaggggtgg caacgtcttt cctatgggcc aaatcaagat
      541 cctcgcacga cttgcctctc aacaaatctc cgtgagccga atactatttg ggccggcact
      601 ccggcgtctg ggatattggt gacgcatgat ggagggaaga gttggcacca agtggccggc
      661 atcccgcaag attttccagt gaacactatt gtccaagacc ctcaacgacc ggattatatt
      721 tatgttggca ccaaacagtc gttctacatg tcgcatgatg gcggcctcag ttttacgcga
      781 cgcggaggca atcttccctt tggtgatttc accagcattc tcgtgaattc acgaaacggc
      841 gatgaaatct ttaccggcaa cgcttatcag acaggtgaaa ttggtggtgg tgtgtatcgc
      901 accataaatg gcggcgtcac ctgggcgcgc attgatccca agcaacgacg tttgccgagt
      961 cagcgaatat gggcgttggc attcgactcg caggatcaga atgtgttgtt tgttggctca
     1021 cactcggccg gtgtttacgt tgtaccgaga acttctgaca acctgtcctc cagtcagtaa
     1081 atggtttgag tggtggttaa gcaaagccgt gagagcaatc tcgcggcttt g
//
LOCUS       DATCGC010000282         2525 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_370134, whole genome shotgun sequence.
ACCESSION   DATCGC010000282 DATCGC010000000
VERSION     DATCGC010000282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2525
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_370134"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..231)
                     /locus_tag="VIJ87_02760"
     CDS             complement(<1..231)
                     /locus_tag="VIJ87_02760"
                     /inference="COORDINATES: protein motif:HMM:NF019135.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HEY5443391.1"
                     /translation="MALLFVIIPTSAQQARNQYRADFWTTDEGLPQNSVRSILQTRDG
                     YLWFTTNDGLVRFDGVHFRVFGKGNTPGIVSNR"
     gene            complement(499..2016)
                     /locus_tag="VIJ87_02765"
     CDS             complement(499..2016)
                     /locus_tag="VIJ87_02765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443392.1"
                     /translation="MVWFSFLLALMSLIISGLCLGQKSATKQATSIPKTWDDQAMMSL
                     QLPPADRRVSPKLISSDYYYRMPVRPVYKSYPVYRPDREPRGYFDELKRKEPQIIFDA
                     SKFKSEADWTKAGEMVFDAPIDFESEGTLYSEVRGMDWFTKNNVLVTSEGVMPNMRYV
                     VREKGKVELGFGACAGCHTRVMPDGSVIKGAQGNFPDDRAFGYEQRIREAKAKNKDAI
                     LANLRSFIRRSYGAPWIKDDASARADRMSVSEIASVLEAITPGTCARQGTSPFYPSAI
                     PDLIGLKDRKYLDSTGLVRQHNIGDLMRYAALNQGADQLTLYDQFRPAGELPKPSTRE
                     RYSDEQLYALALYIYSLKPPDNPNKFDALAKQGYEVFMTEACDVCHTPPLYTNNMLTP
                     VAGFKVSKEDRITDDVLNLPIDTDPNLALDTRRGTGYYKIPSLKGLWYRGPFEHNGSV
                     ATLEDWFDPRRLRDDYVPTGFRGYGVTTRAVKGHEFGLSLTPEERKALIAFLKTL"
BASE COUNT          592 a          628 c          661 g          644 t
ORIGIN      
        1 tcggttactt acgatcccgg gcgtgttgcc cttgccgaag acacggaagt gcactccatc
       61 aaagcggacg agtccatcgt tggtcgtgaa ccagagatac ccatcgcgtg tctggagaat
      121 cgagcgcaca gagttttgcg gcagcccttc atcggtggtc caaaagtctg cgcggtactg
      181 atttcgtgct tgctgagcag aggtggggat gattacgaag aggagagcca atagcgccgg
      241 agcgcacgcc cttctgatgg aaaaacttgc agctcgtcgc gaggttatga acatgcagcg
      301 aggctttacg aagattcgcc ggaccgattt ggtgcggctg gcacgttgac gcgttggata
      361 ttagcacggc gcgccgaggt atcactgcga tagagagttc caatagcgag tcgacttgct
      421 tggttggaga tctctggaag ctcaggataa gtttttagcg acctttagga attaacgccg
      481 ataccaattg aaagtccgtc acagtgtttt caagaacgcg atcagcgcct tgcgctcttc
      541 gggtgtgaga ctcaatccaa actcgtgtcc tttgacggcc ctcgtcgtta caccataacc
      601 gcggaaacct gtgggcacgt aatcatctcg cagtcgtcgt ggatcaaacc aatcttctag
      661 cgttgcaacc gatccattgt gctcgaaggg gccacgatac cagagacctt tcaaagaagg
      721 gatcttgtaa taaccggtac ctctgcgagt gtcgagcgcc aggtttggat cagtatcgat
      781 cgggaggttc aggacgtcgt cagttattcg atcttctttg gacactttga agccggccac
      841 cggtgtcagc atgttgtttg tgtaaagcgg cggcgtatga cagacgtcgc aagcttcagt
      901 cataaaaact tcatagcctt gcttagctaa cgcgtcaaac ttgtttggat tgtcaggcgg
      961 tttgagggag tagatgtaga gcgccagcgc gtagagttgt tcatcgctgt agcgctcgcg
     1021 tgtggacggt ttgggcagtt cgcccgctgg acgaaactga tcgtagagag tgagctgatc
     1081 tgcaccctgg tttaatgcgg cgtatcgcat cagatcaccg atattgtgct gacggacgag
     1141 gccagtgctg tcgagatatt tccgatcctt cagaccaatc agatccggta ttgcggacgg
     1201 atagaatgga ctggtgccct gtcgcgcgca tgtgccgggc gtgatcgcct ccagcacgga
     1261 agctatctcg gaaactgaca ttcgatctgc ccgcgcactc gcatcatctt taatccaagg
     1321 agctccgtag ctgcgacgga taaagctgcg taggtttgca aggatcgcat ctttgttttt
     1381 cgcttttgct tcccggattc gctgctcata gccaaaggcc cgatcgtcag ggaaatttcc
     1441 ctgagctccc ttgatgaccg aaccgtctgg catcacacgg gtgtgacagc cggcgcaagc
     1501 accaaacccg agctcgactt tgcctttttc tctcaccaca taccgcatgt taggcatcac
     1561 accttcgctg gttacgagca cattgttctt agtgaaccag tccatcccgc gaacctctga
     1621 atacagtgtg ccttcagact caaaatctat cggtgcgtcg aacaccatct caccggcttt
     1681 ggtccaatca gcttctgact tgaatttcga ggcgtcaaag ataatctgag gttctttgcg
     1741 cttcagttcg tcaaagtagc cgcgtggttc acgatcagga cggtagaccg ggtaactctt
     1801 gtacacagga cgcaccggca tgcggtagta gtagtccgaa gagatgagtt ttggagacac
     1861 gcgtcggtct gcgggcggaa gctgaagaga catcattgcc tggtcgtccc aggttttggg
     1921 aatggatgtc gcctgtttgg ttgcagactt ttgtcccagg cagagaccgg aaatgatcaa
     1981 actcattagc gccagcaaga agctgaacca aaccattttc gacgtcagga aaaggcgtcc
     2041 tagttcactg tgtttctctt tgaacttctg acaagtgttt cccaaggtgg atataccttc
     2101 gtcactgctg cgataagcga gacgcgttaa atcttcctca agaattcgca ggctcggtgt
     2161 gattaaagcg ttggatatta ttatgcggct tgtcgttttt attgggaaca cttttgacgc
     2221 atccaattgt gactaaaaga acccaagatg cgcacttaat gtctactaat aagtcgacga
     2281 ttcagttaga atctcactca taacacgcgc gtacttttac aatggagatc tcgtctggag
     2341 tctagacatg aaatccagat accagaaaat cgcgggcttg acgtaactcg attattagat
     2401 tttttggggc ggttttcact tctcattcct tcaacttttt acggcacgat aattggatca
     2461 aaactacgaa ccacattcgt accaacaaag cctcgattga aatcatcccc caagttttag
     2521 cgacc
//
LOCUS       DATCGC010000283         1039 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_170718, whole genome shotgun sequence.
ACCESSION   DATCGC010000283 DATCGC010000000
VERSION     DATCGC010000283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1039)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1039)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1039
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_170718"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(248..>1039)
                     /locus_tag="VIJ87_02770"
     CDS             complement(248..>1039)
                     /locus_tag="VIJ87_02770"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEY5443393.1"
                     /translation="HKSKRRADGAAAKTINNELTLLGQAFQLAVKEWEWVAENPVQMV
                     SKEKVRNLIERWLTAEEERRLLAASPEWLQEIIVFAANTGLRQSEILNLQWCNVDLFR
                     RTITLLEQKNGGRDTLPVNEKTLNVLKARAKVRSLKTDYVFSNGAGNRMDARDLLRVF
                     YPVMKKADVKRFRFHDLRHTFTTRLVQAGADIYTVQTLGRWKTISMVMRYVHHHPESL
                     RAGIEILDRVPVSVSTVLAQSAGVNPSVETPKLTLLLVGCTLSFQ"
BASE COUNT          222 a          299 c          249 g          269 t
ORIGIN      
        1 gcattcgcga caggtccaca tctgtctcag gctctggctg aactgcatgc ggtacacact
       61 tacactctta cacttcggac agggggggtc ggatcgtggt gtccatgagt aacctaatga
      121 tgagtttcgc atgtcaggca atgataagtc tcggtctctg gcatactgga ccacctccca
      181 tgcctcgcga tgctcacttt tgctctttcc cacgcaggca gctttctccg cattcggggg
      241 caccgcttca ttgaaatgac aaagtacatc caaccaacaa gagagttaat tttggtgtct
      301 caacggaagg gttcacccca gccgattgtg ctaaaactgt gctaacactt accggaacac
      361 gatccaggat ctcgatcccc gcgcgtaaac tttccggatg atgatggaca taccgcatca
      421 ccatcgagat ggttttccat cgtccgagcg tttgcacggt gtagatgtcc gcgcccgctt
      481 gcacgagtcg agtggtaaag gtatggcgca gatcatgaaa ccgaaagcgt ttcacgtctg
      541 ctttcttcat aacaggatag aacacgcgca gtaagtcgcg cgcatccatc cggtttccgg
      601 ccccattgga gaagacataa tccgtcttga gcgatcggac tttcgccctg gctttcagca
      661 cgttgagggt cttctcattc acgggcagtg tatccctgcc tccgttcttt tgttccaaca
      721 gcgtgatcgt ccttcggaac agatccacat tgcaccattg gaggttcaga atctcactct
      781 gtcggagtcc cgtgttggct gcaaagacaa tgatctcttg cagccattcg ggagaagccg
      841 ctaaaagacg ccgctcttcc tctgctgtca gccatcgttc gatcaaatta cgcactttct
      901 cctttgagac catttgcacc gggttctcag ctacccattc ccattccttc accgcgagct
      961 gaaaagcctg gcccaagagc gtgagttcat tgttgattgt cttggctgct gccccgtcag
     1021 ctcgtcgctt cgacttatg
//
LOCUS       DATCGC010000284         1203 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_70656, whole genome shotgun sequence.
ACCESSION   DATCGC010000284 DATCGC010000000
VERSION     DATCGC010000284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1203)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1203)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1203
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70656"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..812)
                     /locus_tag="VIJ87_02775"
     CDS             complement(<1..812)
                     /locus_tag="VIJ87_02775"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY5443394.1"
                     /translation="MEHFDVLIVGAGLSGIGAAAHLRMECPQKSFAILEGRATMGGTW
                     DLFRYPGVRSDSDMFTLGYRFRPWNNPEAIADGPAILKYISETAEEWEVNENIRYNHR
                     VKLASWSDDEAVWTVEVEVGPGKSIVYFTCGFLYLCTGYYDYENGYAPKWPGMELFRG
                     RIVHPQKWTDDIDYTDKRIVVIGSGATAVTLVPALARRAAHVTMLQRSPSYVVSRPSQ
                     DWIANRLRKLLPARTAYAITRWKNVLFGIGFFYLSRKRPSWMKQLIASGVRK"
     gene            complement(857..>1203)
                     /locus_tag="VIJ87_02780"
     CDS             complement(857..>1203)
                     /locus_tag="VIJ87_02780"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEY5443395.1"
                     /translation="PVRLLFGEPELSQLMPLDYSVMEDIPERADLKIEEKPDAQYPSS
                     ALSLDISGDVLLNVTIDESGHVIRATIISNVPPLGPAALEAVHRARFTPVHKNGKPVC
                     ATGVVSYSFRPR"
BASE COUNT          288 a          323 c          317 g          275 t
ORIGIN      
        1 tcctttctta cacctgaggc gatcagttgt ttcatccacg aaggacgctt gcgcgaaagg
       61 tagaagaagc caattccaaa caacacgttc ttccatcgtg ttatggcgta ggctgtccgg
      121 gcgggaagca attttctgag acggtttgcg atccagtctt gtgaaggacg tgagacgaca
      181 tacgatggtg aacgctgaag catcgtaacg tgcgccgcac gtcgcgcaag tgctgggacg
      241 agtgtgactg cggtagcacc actaccaatt acaacgatcc tcttgtcagt gtaatcaata
      301 tcgtcggtcc atttctgtgg atggacgatg cgcccccgga agagttccat tcccggccat
      361 ttgggtgcgt aaccgttctc atagtcgtaa tagccggtgc ataaataaag gaaaccgcaa
      421 gtgaaataaa ctatcgattt gcctggtcct acctcaactt caacggtcca gaccgcttca
      481 tcatcggacc aggaagccag ctttacccga tggttgtacc ggatattttc gttgacttcc
      541 cattcttccg cagtctcact gatgtatttc agaattgcag gaccgtcggc gatggcttcc
      601 gggttgttcc aggggcgaaa gcggtagccg agcgtaaaca tgtcagagtc tgagcggacg
      661 cccgggtagc gaaagaggtc ccacgtccca cccatagttg cgcgtccctc gaggatcgca
      721 aaactctttt gcggacattc catcctcagg tgggccgctg ccccgatccc tgaaagaccc
      781 gctcccacga tcaatacatc aaagtgttcc atgcccagag gtccgcgcag ccgtagctcg
      841 gtggcggcat tagcccttat cggggtcgga atgagtagga gacgacgcca gtagcacaaa
      901 caggcttgcc gtttttatgc acaggagtaa aacgtgcgcg atgaacagct tccaacgcag
      961 caggtccaag cggcggtacg ttgctaatga tcgttgcccg aatcacgtgt cccgactcat
     1021 ctatcgtaac gttcaacaag acgtcgccgg aaatatctag cgacaaagcg gatgaagggt
     1081 actgagcatc aggcttctct tcgattttca aatcagctcg ttcaggtatg tcctccatca
     1141 ccgagtagtc gaggggcatt aattgtgata gctcaggctc tccgaaaaga agacgcaccg
     1201 gct
//
LOCUS       DATCGC010000285         1106 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_436859, whole genome shotgun sequence.
ACCESSION   DATCGC010000285 DATCGC010000000
VERSION     DATCGC010000285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1106)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1106)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1106
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_436859"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..335
                     /locus_tag="VIJ87_02785"
     CDS             <1..335
                     /locus_tag="VIJ87_02785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443396.1"
                     /translation="PLGAYVRLDLPGLLSRPLLQQVVVLLAGIAANLIAAILTDGTRF
                     SLMNYLLAVTNILPLYQQDSWKCGIVVLRDVLQRKSPIVEWTFTIAGSSLSFILFVAL
                     IIRRIKGL"
     gene            740..1018
                     /locus_tag="VIJ87_02790"
     CDS             740..1018
                     /locus_tag="VIJ87_02790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443397.1"
                     /translation="MKSENRKVQMTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVL
                     CVAIAFVSIAMKMVDGLAFRGRTEQEQCGDVETNGNTALRVESTTRLS"
BASE COUNT          251 a          304 c          264 g          287 t
ORIGIN      
        1 tgcctctagg agcctacgtc cgtctcgacc tacccgggct attgagccgg cctttactac
       61 aacaggtcgt tgtcctgctt gccggaatag ctgccaacct gatcgccgcc atcctgacag
      121 acggtacccg ttttagcctt atgaactacc ttctcgcggt taccaacatc ctaccccttt
      181 atcagcagga cagttggaag tgcggcattg ttgtccttcg cgatgttctt cagcgcaaga
      241 gcccaatcgt agaatggacc ttcaccattg cgggcagctc cctcagtttc attcttttcg
      301 ttgcgctcat aatacgccgc ataaagggcc tctagcttca tcctggacgt cgacgctcaa
      361 ccgagcgggg ccgaatgatt gggcctcttc gtgcatcgcg gtgtgtgcga gcaatttccc
      421 acggtaatct gccaggacga ctattgttca gcttcaacct cttcgagtgt ccctgagttg
      481 atcctttgaa cagatgttgt caactccagg ggacaacctg attttcaagc ataacaaagc
      541 attattgttg tccttcctct cccgtcctga ccttagtttg gtttttcttg tacccctcag
      601 gctacaaact cacgccagtt tctcaggaaa acctcaaata cgggatgttc tattcacggc
      661 acaccccttg taatggacca agtgccgggg ctaacccgag tagacagagg cttatcacta
      721 agcaggttgg acaagactta tgaaaagtga aaaccgaaag gttcaaatga cgctgttagg
      781 ggtggtagtc acaacaccat tcctggtcct tgcttcggtg gtcggtgccc atattacttc
      841 gcttgccgac aatgtgaggg ttgacgttct ttgcgtcgca atcgcattcg tcagtatcgc
      901 gatgaagatg gttgatgggc ttgcatttcg aggcagaacc gaacaggaac aatgcggcga
      961 tgttgaaact aacggcaaca ctgctctgcg cgtcgagtcc actaccaggc ttagctgaaa
     1021 aatccaagtt gtccttcccc atcaagctcg gaagcctcgt ggtggaacag ggcgcttaac
     1081 tcttaaccga agtatcaatc ctaagg
//
LOCUS       DATCGC010000286         1432 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_336961, whole genome shotgun sequence.
ACCESSION   DATCGC010000286 DATCGC010000000
VERSION     DATCGC010000286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1432)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1432)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1432
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_336961"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..986)
                     /gene="murC"
                     /locus_tag="VIJ87_02795"
     CDS             complement(<1..986)
                     /gene="murC"
                     /locus_tag="VIJ87_02795"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: protein motif:HMM:TIGR01082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008763 - UDP-N-acetylmuramate-L-alanine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HEY5443398.1"
                     /translation="MFRRIQHVHFVGIGGIGMSGIAEVLVNLGFRVSGSDLKASSVTD
                     RLQRMGVEIFEGHASENVGQPHVVVRSTAVRDDNPEVVEANHRSIPVIPRAEMLAELM
                     RLKPHTVAVAGSHGKTTTTSMVATVLGHAGLDPTMVVGGVVGAFGSNAHLGTSDLMVV
                     EADESDRSFLMLTPTIAVVTNIDREHMDYYHDMDDVRTCFAKFVNSVPFYGSSVLCLD
                     DPNVQAIIPLLERRRMTYGLSAQADVSAHGIRYDSDFGSTFTIWRGTDVVGDVNLRVP
                     GMHNVYNSLAAIAVGFELEVSFEKIAEGLNSFTGAGRRFQAKGEVNGVLVVD"
     gene            complement(1171..>1432)
                     /locus_tag="VIJ87_02800"
     CDS             complement(1171..>1432)
                     /locus_tag="VIJ87_02800"
                     /inference="COORDINATES: protein motif:HMM:NF016027.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY5443399.1"
                     /translation="GKAAVMIPFPLAADDHQRKNAEALVESGAARMILQKDLSGERIA
                     KEIIELAQHPETVNSMEHAIRKLAKGDAAAAAVDIIEELSVR"
BASE COUNT          336 a          410 c          341 g          345 t
ORIGIN      
        1 tcgtcgacga cgagtactcc gttaacttcg cccttcgcct gaaacctacg gcccgcgcca
       61 gtgaagctgt tcagtccctc agcaattttt tcgaatgaca cctccagctc aaatccgact
      121 gcaatagcag cgagcgagtt gtaaacattg tgcattccag gcacgcgtag gttgacgtct
      181 ccaacaacat cggttccgcg ccagatggta aacgtcgaac caaaatcact gtcgtaccga
      241 atgccgtgcg ccgagacgtc agcttgcgcg ctcaagccgt atgtcattct gcgacgttca
      301 agcaaaggga tgattgcctg cacgtttgga tcgtctaaac agagcaccga cgagccataa
      361 aacgggacgg agttcacaaa cttcgcgaag caagttcgaa cgtcgtccat gtcgtggtag
      421 tagtccatgt gctcacgatc gatgttcgtg acgactgcaa tcgtaggggt caacatcagg
      481 aacgatcgat cgctttcgtc agcttcaaca accatcaggt cgctggtgcc aaggtgagca
      541 ttcgaaccaa acgcgccaac aacaccacca acaaccatgg ttggatcgag gcccgcgtgt
      601 cccaacacag tcgccaccat cgaagtagtg gtcgtcttac cgtgtgaacc agcgacggcc
      661 accgtatgtg gtttcaagcg cattaactca gcgagcattt cggctcgcgg aatcactgga
      721 attgaacgat ggttagcttc gacgacttcc gggttgtcgt cccgcacggc cgtcgatcga
      781 acaacgacat gcggttgtcc aacattctcg gaagcgtgtc cttcaaagat ctcgaccccc
      841 atccgctgaa gacgatcagt gacggacgag gctttcaggt ccgagcctga aactcgaaat
      901 ccaaggttga cgagtacttc ggcaattcca gacatgccga tgccgcctat accgacaaag
      961 tgaacgtgtt gaatgcgtcg aaacatgatg ttcggtgctt tgaacttagt acttagtgct
     1021 ttgtcctttt acttagcgcc gccgggcaac gtcggcgttt accaaactcg gcactccccg
     1081 tttgtccgat atgctttagc ttgtcgtcgt ctcaattctc aattctcgtt cagcgatgac
     1141 agatttgttc agtagacgac aaactaaagt ttatcgaaca ctcaactcct caatgatgtc
     1201 gactgcggca gctgctgcat caccttttgc caactttcta attgcatgct ccatcgagtt
     1261 aaccgtctcc ggatgctgtg ccagttcaat gatctctttt gcaatccgtt ctccactcaa
     1321 atccttttgc agaatcattc gcgcggcgcc cgattcaacc agcgcttctg cgttctttcg
     1381 ctggtggtcg tcggcggcca acggaaacgg aatcatcact gctgctttac ca
//
LOCUS       DATCGC010000287         1353 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_37762, whole genome shotgun sequence.
ACCESSION   DATCGC010000287 DATCGC010000000
VERSION     DATCGC010000287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1353)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1353)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1353
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37762"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1353
                     /locus_tag="VIJ87_02805"
     CDS             <1..>1353
                     /locus_tag="VIJ87_02805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="protein ndvB"
                     /protein_id="HEY5443400.1"
                     /translation="FLANQDERIYFGLLGDFADADTQDCPTDSQALAAAQSGIDELNR
                     RHGGNRFHLFHRKRIWNESERRWMGWERKRGKLEEFNRLLRGHHDTTFIVRTADDALL
                     KATRYVITLDSDTQLPRDVARKLIGAAIHPLNRPKIDERVNRVTYGYGILQPRVSISL
                     ESASRSRFVRIFSGNTGIDPYTTAVSDVYQDLFGEGSFTGKGLYDVDAFQTTLDKRVP
                     PNSLLSHDLFESLFARAALTTEIELLDDYPSSYLAYAKRQHRWARGDWQLLRWLFLRI
                     PHADGHKVKNPLPLIAQWKVFDNLRRSLVGPALFVWILASCLLFPGSTLGWSLFVLLT
                     IAFPIYLHVATGLLIHPRGVPWTSHFWSIWGDFRTNSAQIGLALALLPHQAYLMCDAI
                     VRTLYRQFISRKKLLEWVSAAETERSSRNDFVSFLWFMLPAELITLIAVALTIRFRPT
                     "
BASE COUNT          298 a          375 c          342 g          338 t
ORIGIN      
        1 attttctcgc caaccaggac gaaagaatct atttcgggtt actcggcgat tttgctgatg
       61 cggacactca agactgcccc accgactccc aggcgctggc ggccgcgcaa agcggaatcg
      121 acgaactaaa caggcgccac ggcggcaata ggtttcactt gtttcatcgc aaacgtattt
      181 ggaatgaaag tgagcgaagg tggatgggct gggagcggaa gcgaggaaag ctcgaagagt
      241 ttaaccggct tctgcgagga caccacgata cgacgttcat tgtgcgaact gctgatgacg
      301 cgcttctcaa agcaactcgt tacgtgatca cgctcgactc cgatactcaa cttccacgcg
      361 acgttgcgcg taagctgatc ggtgcggcga ttcacccact taaccggccg aagattgacg
      421 agcgggtaaa tcgtgttacc tacggctacg gcattctgca accacgcgtt agcatctcgc
      481 ttgaaagcgc gtctcgttcg cggtttgtca ggattttctc gggcaacacc ggcatcgatc
      541 cttatacgac agctgtctca gacgtttacc aggatctatt tggcgaaggt agtttcactg
      601 gcaaagggct ttacgacgtc gatgcttttc aaactacgct cgataagcgt gtcccaccga
      661 actcactgct cagtcacgat ctctttgagt cgctctttgc acgcgctgct ttgacgactg
      721 aaattgaact ccttgacgac tatccgtcct cttacctggc atatgcaaaa cggcaacatc
      781 gttgggcgcg tggcgattgg cagctcctgc gctggctttt tctaagaatc ccgcacgccg
      841 acggacacaa agtaaagaac ccactaccgc tcatcgcgca gtggaaggtg tttgacaatc
      901 tcagacgcag cctggtgggt cccgctttgt ttgtctggat acttgcatcg tgtcttttgt
      961 ttccaggatc gacattggga tggagcctct ttgttctttt gacgatcgct tttccgatct
     1021 atctccatgt cgcaactgga ttactgattc atccgcgcgg cgttccctgg accagtcatt
     1081 tctggagtat ctggggagac tttcggacaa acagcgcgca gatcggcctg gcactcgcac
     1141 tactcccaca tcaagcatat ctgatgtgcg acgcgatcgt tcgcacgctc tatcgacaat
     1201 tcatctcacg caagaaactt ctcgaatggg tatcggcagc ggaaaccgag cgctcatctc
     1261 gcaatgactt cgtctcgttc ttgtggttca tgcttcccgc tgaactgatc actttgatcg
     1321 cagttgcgct cacgatcaga ttcagaccaa cgg
//
LOCUS       DATCGC010000288         2332 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_37767, whole genome shotgun sequence.
ACCESSION   DATCGC010000288 DATCGC010000000
VERSION     DATCGC010000288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2332)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2332)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2332
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37767"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            13..1992
                     /locus_tag="VIJ87_02810"
     CDS             13..1992
                     /locus_tag="VIJ87_02810"
                     /inference="COORDINATES: protein motif:HMM:NF024977.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY5443401.1"
                     /translation="MIPVKHQGEVIDTLPGEEVEFTIDPTAFHLIMDSLSDLYSNRSL
                     AVIREYSTNAMDSHIMAGITDPIDVTLPSPDDLHPFFRVTDHGVGLTSTELKELYTSF
                     GKSNKRASKDTNGLLGYGCKSALAYTNSFTVTSVKDGQKVYAVITRKDDGRMVLKEVI
                     SRVTDERDGVSVEVPVSNVDEFNRIAYRFYKFWEEGTVTINGGPVENPFINKDNKLGK
                     NLYRNTVDRDSYVVMGNVPYPVNNPASLFPSHDSYVPFVAYVNIGDVEFVPAREALKY
                     TDLTTKTIQTIVDGYITERRNLAEKEVGHAKTKWEALKFSRKWYNLLRVRIPYKGEKI
                     PGELEFEGYEWKTHYRRYPVEQIGKHRHKSHIDLDSDFMVVTGVNSIGSYQKERLKSW
                     ALTKYGPTTGRLPNVVYATSDASWNSEWVDPSLVISWDDLKAQTPPPARVARAAGRIK
                     GSWDLFKPDGSRVYGKPLKKAKYWAHLDEIKQWERRGDWHRITAEFGLDNSVVIVPYN
                     RINTFTKAFPNATHIIQHFKTQVDLDGESMYNGEQKEYFGLDVSQRRVLAKYDETKID
                     DPDFKRLIKISKRTDIVKPDGYDKNLQRASMLGLKFKVLESHTEYTEVEKRYPIIEYG
                     LSGINYGRWARHTEDLYIYINAKYAAIAARKEGNV"
     gene            1985..>2332
                     /locus_tag="VIJ87_02815"
     CDS             1985..>2332
                     /locus_tag="VIJ87_02815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443402.1"
                     /translation="MSEKISFIFNRGDKVDSVVALDPDSDSPLHQADSNHPNWDRIVE
                     LLKNNDKSVFDLFDPIGAAAAKLMVLSERFTYDHGLIRFDGEVRTGPLADHLVRVIKT
                     GTDDYSPIVKFWEL"
BASE COUNT          608 a          592 c          592 g          540 t
ORIGIN      
        1 aaggattaaa ctttgattcc ggtcaagcac cagggcgaag ttattgatac cctacccggc
       61 gaagaggtag agtttacgat tgacccgaca gcgttccatc ttatcatgga ttcactgtcg
      121 gacctttact ccaaccgctc actggcggta atcagagaat atagcacaaa tgctatggac
      181 tcccacatca tggcaggcat tacagaccct attgatgtga cgctgcccag ccccgatgac
      241 ctgcacccat tctttagggt caccgaccac ggtgtcgggc taacctcaac tgagttgaag
      301 gaactttaca cctctttcgg taagtccaat aagcgcgcca gcaaggacac caacggtctg
      361 ctgggttatg gttgtaagtc ggctctggcc tacacaaact cgttcacggt tacctcggtc
      421 aaggacggcc aaaaggttta cgcggtcatc acccgcaagg acgatggtcg catggtcttg
      481 aaggaagtaa tctctcgggt caccgacgag cgcgacgggg tatccgttga ggttccggtt
      541 tcaaacgttg atgagtttaa ccgcatcgcc taccggtttt acaagttctg ggaggaagga
      601 acggtaacca tcaatggtgg tcccgtcgag aatcctttca tcaataagga taacaaactg
      661 ggcaagaacc tttatcgcaa taccgtggac cgcgactctt atgtggttat gggtaatgtt
      721 ccttatccgg tcaacaaccc ggccagccta ttcccgagcc acgactcata tgtgccattt
      781 gttgcctatg tcaacattgg cgacgtagag ttcgttccgg cccgtgaagc gcttaagtac
      841 accgacctga ccacgaagac tattcagact attgtggatg gttacattac tgagcgccgc
      901 aacctggccg agaaggaagt cggtcacgca aagacaaagt gggaggcgtt gaagttctct
      961 cgcaagtggt ataacctgct ccgcgttcgc attccctata agggtgaaaa gattcctggc
     1021 gaattggagt ttgagggcta cgagtggaag acgcactatc gccggtatcc tgtagagcaa
     1081 attggcaagc atcgtcacaa gagtcacatt gacctggact cagactttat ggttgtcacc
     1141 ggagtaaact ctattggctc ttaccaaaag gaacgcctca agtcatgggc gctgaccaag
     1201 tatggaccga ccacaggcag gcttcccaac gtcgtctacg cgacctctga cgcctcgtgg
     1261 aattcagagt gggttgaccc ctcgctggta atttcctggg acgacctaaa ggctcagacg
     1321 ccgccccctg cccgtgtggc tcgtgctgct ggacgcatca aggggtcctg ggacctgttc
     1381 aagcctgacg gcagccgggt atatggaaag ccattaaaga aggctaagta ttgggctcac
     1441 cttgacgaaa tcaagcaatg ggagcgacgc ggtgactggc acagaattac cgctgaattc
     1501 ggccttgaca actccgtggt aattgttccg tataaccgaa tcaatacctt caccaaggca
     1561 tttcccaatg ccacccatat catacaacac ttcaagacac aggttgactt ggacggcgaa
     1621 tccatgtaca atggggagca gaaagaatac ttcggtctag acgtgagtca acgtcgtgtg
     1681 cttgccaagt atgacgaaac caagattgat gacccggact ttaagcgcct aatcaagata
     1741 tccaagagaa cggatattgt caagcctgac gggtatgata agaacctaca gcgagcctcg
     1801 atgttggggc ttaagttcaa ggtactggaa tctcataccg agtataccga ggttgagaag
     1861 cggtatccca tcatagaata cggactcagc ggcattaatt atggccgatg ggctcgtcat
     1921 accgaagacc tttacattta tattaatgca aaatacgctg ccattgcagc aagaaaggaa
     1981 ggaaatgtct gaaaagattt cctttatctt caatcgggga gacaaggttg actctgtagt
     2041 cgctcttgac cctgattcag attcgccgct gcaccaggca gactcaaacc accctaactg
     2101 ggaccggatt gtagaattgc taaagaacaa cgataagtcg gtgttcgacc tgtttgaccc
     2161 aatcggtgca gcagccgcta agttgatggt gctctcagag cgcttcacct atgaccacgg
     2221 acttattcgt ttcgacggag aggttcgtac cggtccgctc gcggaccacc tagtacgagt
     2281 aatcaagact ggcaccgacg actattcgcc aattgtcaag ttctgggaat tg
//
LOCUS       DATCGC010000289         1076 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_237705, whole genome shotgun sequence.
ACCESSION   DATCGC010000289 DATCGC010000000
VERSION     DATCGC010000289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1076)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1076)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1076
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_237705"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..290)
                     /locus_tag="VIJ87_02820"
     CDS             complement(<1..290)
                     /locus_tag="VIJ87_02820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443403.1"
                     /translation="MLVTTLATLPSLDNQTRVLQQQSLIGCEYFRQTEWFAFEAQQPI
                     DRTLILRGRRKSLRKADTKVMIDPHQPTIERAIVKRIQTQTVSRIQAICCVLR"
     gene            634..>1076
                     /locus_tag="VIJ87_02825"
     CDS             634..>1076
                     /locus_tag="VIJ87_02825"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY5443404.1"
                     /translation="MIDVSFTPFPFLTTENYALRNLIPEDAQEIFALRSSDEINKYLA
                     RPKANTLDDARNFITKIINGIAKNESIFWVVTPKSESKFLGSICLWKISREEAKAEIG
                     FELLPENHGKGIMQEVIPRIIQFGFEEMKLQTIEAEVTPRNLKSVR"
BASE COUNT          304 a          232 c          288 g          252 t
ORIGIN      
        1 cgcaagacgc agcaaatcgc ctgaatgcga gaaacggttt gtgtttgaat ccgcttcacg
       61 atcgcgcgtt cgatcgtcgg ttgatgtgga tcgatcatga ctttcgtgtc cgcttttcga
      121 agcgactttc ttctgccgcg aagaatgagc gtgcggtcga ttggttgctg agcttcgaag
      181 gcgaaccact ccgtttgccg aaagtattcg cacccgatca gcgactgttg ttgcaacacg
      241 cgagtttggt tatcgagtga aggtaaagtc gcgagggtag tgacgagcaa gttgggaagc
      301 gagtgagttt caaaatccct caatcactcg ccaaggtgtt gcaacgtcgt cgccctggaa
      361 tagccggccc gcgaggccgc ctcgtcccgg gcggcacgaa agaaggacga aggacttcgg
      421 aagtttgaag taagctgttc tcttagcggt taaatgctgg ctgaagaaaa gaggagtctt
      481 tcaggacgta acggtgattc gtcacgataa gaaaattgat ctgcgggtta ggccggtgga
      541 ggcgcggacg ttgtcaccaa acccaagaaa gtatgaagga agaaggaaga actatgaaga
      601 gaacctgatg ttggaagcat ttatcttgca catatgattg atgtctcttt cacacctttc
      661 ccatttctca caacggagaa ttacgcgctg cggaatctca taccggagga tgcgcaggag
      721 attttcgctc tgcgctccag tgacgagatc aacaaatatc ttgctcgccc gaaggctaat
      781 acgctcgatg atgcacgaaa cttcataacc aaaataataa acggcattgc aaagaacgaa
      841 tcgatatttt gggtagtgac accaaagagt gaatcaaaat ttctcggatc aatttgtctc
      901 tggaaaattt caagagagga agcgaaggcg gaaatcggct ttgagctgct tccggaaaat
      961 cacggcaaag gaatcatgca ggaagtgatt ccaagaatta ttcaatttgg atttgaagaa
     1021 atgaaactac aaaccatcga agctgaagtt accccgcgaa atctgaaatc ggttcg
//
LOCUS       DATCGC010000290         1116 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_170783, whole genome shotgun sequence.
ACCESSION   DATCGC010000290 DATCGC010000000
VERSION     DATCGC010000290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1116
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_170783"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..893)
                     /locus_tag="VIJ87_02830"
     CDS             complement(<1..893)
                     /locus_tag="VIJ87_02830"
                     /inference="COORDINATES: protein motif:HMM:NF021355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-propeller domain-containing protein"
                     /protein_id="HEY5443405.1"
                     /translation="MKIVLLAALSLGLLISGLVACATGPSLQIPPVSGQAVTPVKKTM
                     QAFGSEQELAKYLRKLAEKQKTRARGNAAESAMATPAEAPAAVAKSVDAKSGKDEESV
                     TNVQHAGVDEGGIVKLHGDHLVVLRRGRLFTVAIGDGALRPISMVNAYGPDIDPRSTW
                     YDEMLVSQDTIVVIGYSYERGGTEVGLFQIDDAGQLAYRSTYHLRSNDYYSSRNYASR
                     LIGSKLIFYTPLYFYLNGDDPFQSFPAVRKWHKGATESEFHRIAPATHVYRPQGEFNP
                     DYGMALHTVTTCDLANGGFDC"
BASE COUNT          249 a          281 c          323 g          263 t
ORIGIN      
        1 tggcaatcaa aaccaccatt tgcgagatcg caagtagtga ctgtgtgaag cgccatccca
       61 taatctgggt tgaattcgcc ttgaggtcga tagacgtgag tagcaggtgc gatgcggtga
      121 aactcgcttt ctgttgcgcc cttgtgccac ttgcgaactg cggggaacga ttgaaacgga
      181 tcgtcgccgt taagatagaa atagaggggc gtgtagaaaa tcagtttgct gccgatcaag
      241 cggctcgcgt agttgcgcga tgaatagtaa tcgtttgaac gcagatggta agtcgatcga
      301 taggcgagtt gaccggcgtc atcaatttga aagagaccaa cttcggttcc acctcgttcg
      361 tagctatacc caatcaccac gatcgtgtct tgcgagacaa gcatttcgtc ataccaggtg
      421 ctgcgggggt cgatgtctgg cccatacgcg ttaaccattg agattggccg gagtgcgcca
      481 tcaccgatcg caaccgtgaa gagacggcct cggcgcaaga caactagatg atcaccatga
      541 agtttgacga taccgccttc atcgacgcca gcatgctgaa cgtttgttac tgattcttcg
      601 tccttacctg atttagcatc gacggatttt gcaacggcag cgggagcttc ggctggagtt
      661 gccatggcac tctcggccgc gtttcctctg gctcgtgtct tctgtttctc agcaagcttg
      721 cgaagatact tggcgagttc ctgttccgag ccaaacgcct gcatggtttt ctttacaggc
      781 gtgactgcct gacccgacac cggcggaatt tgaagtgacg gtcctgtagc gcaggcgacg
      841 agacccgaaa tgaggagtcc gagcgagagg gcagcgagca gcacgatttt catgttttag
      901 ttccttctcc gaagacgtcg gtttggcgtt cattgaagga ggaacggagg ttgtggggaa
      961 aacttgcgcg gggtgaaaga gtcaggggca ggacgcagga ccaggagcag gagcaggacg
     1021 caggagcagg acgtgtcgta gacctgccac ctgctcctgc ctactgccta ctgcctactg
     1081 cccctatctt ttccactctc gttttagcag gccata
//
LOCUS       DATCGC010000291         2185 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_5762, whole genome shotgun sequence.
ACCESSION   DATCGC010000291 DATCGC010000000
VERSION     DATCGC010000291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2185)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2185)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2185
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5762"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1344)
                     /locus_tag="VIJ87_02835"
     CDS             complement(<1..1344)
                     /locus_tag="VIJ87_02835"
                     /inference="COORDINATES: protein motif:HMM:NF016292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate binding protein"
                     /protein_id="HEY5443406.1"
                     /translation="MVIISDRETPLVRTSHLPDSRFETFQRILRLRGLLPLLLWVIGL
                     AIFFSPASLHAQSSDRTYRLLVLYWDNKDFPGNVKFDESFKAVLQQSPNSRNLEYYPE
                     YMETTRFPGKRQDFFHDYLRQKYEGRSIDVVVATADIPLNFLLQYRADLFPNSPIVFL
                     ATTSRGKETLSAGPGITGIIHQSTYRETLELALKLHQNTKQLFVISGSPERDKRYDTV
                     ARRELSEFTSKVEIIYLTDLPLNELISRTASLPSNSIALYVWQQSVNEQGKLLETFEV
                     LARIAPTASVPIYGMGTGNLGQGIVGGYLQGPDTNGAKLAEITLRILSGTHPQDIGVE
                     GAPKVPMFDWRQLQRWGISEENLPPGSFIGFRVLTFWHQYKWYIAGILTLSLLQTLFI
                     VILLVERSRRRRARRALAQLNAELEERIATRTAALNNKTRELQTFAYSVAHDLKAP"
     gene            complement(1358..>2185)
                     /locus_tag="VIJ87_02840"
     CDS             complement(1358..>2185)
                     /locus_tag="VIJ87_02840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443407.1"
                     /translation="SKGTHLIIRRNLNQPINGVRPYTNLSTTSPILPGTALGNITQVE
                     STGNSSYNAMWLTATQRLSRNLQFNASYTWSKSLDYNSFSSGGIVGQNSYDLRGDRGL
                     SDFDARHRFVMSALYDLPFRGNQFIEGWQLSLIVQSQSGNPINIVTSNSAVNGLTGTL
                     RPDVTGPVAALGKVEGWFDTSVFTPVARFGSLGRNVVIGPTFNNTDFSISKNTRLSEN
                     FRLQFRAEFFDIFNHANFGQPGNLVGSPAFGRITNTRFPTGESGSSRQIQFAIKLIG"
BASE COUNT          546 a          542 c          574 g          523 t
ORIGIN      
        1 cggcgccttg agatcgtggg ccactgagta ggcgaaggtt tgcagttcgc gggtcttgtt
       61 attcaaggcg gcggtacgag tcgcgatacg ctcttcaagt tcagcattga gttgggcgag
      121 tgcccgcctg gcacgacgcc ggcggctcct ttcgaccagg agaataacta tgaataacgt
      181 ttgcaggagc gacagcgtga gaatgccggc aatgtaccac ttatattggt gccagaatgt
      241 aagcactcga aacccaataa agctgcccgg tggcagattc tcttcactaa tgccccaacg
      301 ttgcaactgc ctccaatcga acataggaac cttaggtgcg ccctcgacac caatgtcttg
      361 cggatgcgtt ccactcagga tccgcagagt gatttcagcc agcttagcgc cattggtatc
      421 gggaccctga aggtatccac ctactattcc ttgaccaaga ttcccagttc ccatgccata
      481 gatcggaacc gatgcagtgg gtgcaatccg agcgagcacc tcgaaagttt cgagaagctt
      541 gccttgctca ttcactgatt gttgccagac gtagagggct atagaatttg aaggcaagct
      601 cgccgttcgc gagatcaatt cgttaagagg tagatcggtc agataaatga tttcgacctt
      661 gctggtgaac tcgctgagtt cccgccgcgc cactgtgtcg tatctcttgt cgcgttcagg
      721 cgagccacta ataacgaaaa gttgcttagt attctggtgg agtttaagtg ccaactcaag
      781 agtctctcga taagtactct gatggatgat gcccgtaatg cccggcccag ctgaaagagt
      841 ttccttacct cgcgaagtgg tcgccaaaaa cacaattgga gagttgggga acagatctgc
      901 acgatactga agaaggaaat tgagtggtat atcagccgtt gcgactacca cgtcaatgga
      961 tcgtccttca tatttctgac ggaggtaatc gtggaagaag tcctggcgtt tgcccggaaa
     1021 ccgagtggtc tccatgtatt cagggtaata ctccaggttt cgggagttag gcgattgctg
     1081 aagcaccgcc ttaaaacttt cgtcgaactt cacattgcct ggaaaatcct tgttgtccca
     1141 gtagagcacc agtaggcggt aagtgcggtc gctcgactgt gcatgaagtg aggcagggga
     1201 aaagaaaatc gccaggccta tcacccacag aagtagcgga agtaggcccc gcaatctcag
     1261 aatgcgctgg aacgtctcaa accgactgtc gggtagatga gacgttctga ctaatggcgt
     1321 ctcacgatct gaaataatca ccatccttaa aactcggcta gccgattagc ttaatagcaa
     1381 actggatctg ccgtgacgac ccgctttctc ctgttggaaa gcgagtgttg gtgattcgac
     1441 cgaaggctgg acttccaaca agattaccag gctgaccgaa gttcgcatgg ttaaagatat
     1501 cgaaaaactc cgcccggaac tgtagtcgaa aattttcgct gagccgggtg tttttgctga
     1561 ttgaaaaatc tgtattgttg aaggttggcc caatcacaac gttccgaccg aggctgccaa
     1621 agcgagcgac cggtgtaaat actgacgtat caaaccaccc ttcgactttc ccaagggctg
     1681 cgaccggacc agttacgtcg ggccttaaag tgcccgttag cccgttgact gcactattgc
     1741 tcgtgacgat gttgatggga tttccgcttt gcgactgaac aatcagagac aactgccatc
     1801 cttcgataaa ctggttcccg cggaagggca aatcgtaaag tgcgctcatg acgaagcgat
     1861 gtcgcgcgtc gaaatctgaa agacctcgat ccccacgcaa gtcgtaactg ttttgtccga
     1921 cgattcctcc actgctaaac gagttgtagt cgagtgactt agaccacgtg taagacgcat
     1981 tgaattgaag attgcgactc aaacgctgag tggcagtcaa ccacatcgcg ttgtaactgg
     2041 agttaccagt actttccacc tgcgtaatat tcccgagcgc cgtgccgggc aggataggac
     2101 tagtggtcga caagttggta taaggtcgta ctccgttgat cggctgattc agattacgac
     2161 gaatgattag atgcgtaccc tttga
//
LOCUS       DATCGC010000292         1872 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_104018, whole genome shotgun sequence.
ACCESSION   DATCGC010000292 DATCGC010000000
VERSION     DATCGC010000292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1872)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1872)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1872
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104018"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            147..1232
                     /locus_tag="VIJ87_02845"
     CDS             147..1232
                     /locus_tag="VIJ87_02845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443408.1"
                     /translation="MKSAQTEARLSSLLALGLCVFTLIACSLSKQLLNKKTMFEGTSA
                     KDAGDAFKAKLGGPIKALSLELELNAATLKAQDPKNPEHVDEYKYVKGIVLGPTPVQL
                     NLLERNLKDTLFDLDDINLAATEKLTQTALERAAIEGGKVTKMTIERGLSLAKDMTKS
                     GNVHWAIEIRGTRESATASADAKGTLLGVDLSQTARAANFSTYSADTLRDAGPKIKDA
                     FGGHVRLVELIIYDKYLWFKALSPKDSEITQYKYDINGVTTSALHNIGDNTPIGLRMS
                     RGAKLEDFVFDLNDVKLEMAPELGQKALAKLGLVGGRISLYKISKVPVHFGQKELMTS
                     WDVSCQRDRKSGSVMYDLAGNEVKANQ"
     gene            complement(1339..1755)
                     /locus_tag="VIJ87_02850"
     CDS             complement(1339..1755)
                     /locus_tag="VIJ87_02850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443409.1"
                     /translation="MKATLLRVTSILAVVIALTAVSANAQGVSKRGTFVVPFEFSVGN
                     NVLPAGEYVVSSETQLLRVESKDRKQHVAILPVSTRIDPRSASEVKLKFRRYGDQYYL
                     SQVWLADGIGRDIKRHRTNSDVAQNYSTIELQGRGR"
BASE COUNT          499 a          466 c          468 g          439 t
ORIGIN      
        1 attgttggag gtagggctta gaccgagccg acgctgccgc gtttcggtac tgacttcatc
       61 gccactaaag ttgacttaag caagaagctc cataattgat cagcctcgag ttttcctaca
      121 gtcttttatc ccaactggag gtgcccatga agtcagcaca aacggaagcc cgactatctt
      181 cacttcttgc cttaggactt tgcgtcttta cgctcatcgc ctgcagcctc tcgaaacagc
      241 tgctcaataa gaagactatg tttgaaggca cctcggccaa ggatgcgggc gatgcattca
      301 aggcaaaact cggtggaccg atcaaagcac tcagcctgga actcgagctc aatgctgcaa
      361 cgctgaaggc ccaagatccc aaaaacccgg aacacgtcga cgagtacaaa tatgtgaagg
      421 gaattgtgct gggcccgaca cccgttcaac tgaatcttct tgagcgcaat ttgaaagaca
      481 cgctcttcga tctcgacgac ataaacctcg cggctacgga gaagctcacc caaactgcgc
      541 tggagcgcgc cgcaattgaa ggtggcaaag taactaaaat gacgattgag cgcggcctgt
      601 ctttagccaa agatatgaca aagtccggga acgttcattg ggcgattgaa atcagaggta
      661 cgcgtgaaag cgcgaccgcc tctgcggatg cgaaaggaac cttgcttggt gtcgacttgt
      721 cacaaactgc ccgggccgcc aacttcagta cctactcggc agatacgttg cgcgatgctg
      781 gaccaaagat caaagacgct ttcggcgggc acgtgcgatt agtcgagttg attatttacg
      841 ataagtatct ctggtttaag gctctatctc cgaaagattc cgagattaca cagtacaagt
      901 acgacatcaa tggagtgact accagcgcgc ttcacaacat cggagataac acgccaattg
      961 gtctcagaat gtcgcgcggc gctaagcttg aagactttgt tttcgatctc aatgacgtca
     1021 agttggagat ggcgccggag ttgggtcaga aggcacttgc gaagttgggc ctcgttggcg
     1081 gtcggatcag tctctacaag atctcaaaag ttccggttca ctttggacaa aaggaattga
     1141 tgactagttg ggatgtttca tgtcaacgag atcgcaagtc gggaagtgtg atgtatgacc
     1201 tcgccgggaa tgaagttaaa gcgaaccagt gagttgaagg tcaattagcc acagatagtc
     1261 acagatctcc ttctgacata agaaagagat ccgcccaatc gggcggatct ctgtatcgct
     1321 tgaaattaca atgttgtttt agcgaccgcg tccctgcaat tcaatcgtgc tgtagttctg
     1381 agcgacgtca gaatttgttc ggtgtcgctt gatatcacgt ccgatgccat cagctaacca
     1441 aacctgagac aggtagtatt gatcaccgta gcgcctgaac ttgagcttca cttcactggc
     1501 tgatcgcgga tcgattcgtg tgctcactgg aagaatcgca acgtgctgtt tgcgatcttt
     1561 gctctcaact cgaaggagct gcgtctcgct gctgacaaca tactcaccag caggaagaac
     1621 gttattaccg acgctgaatt caaagggcac cacgaaagtc ccgcgttttg acacgccctg
     1681 tgcgttagcg gaaaccgccg tcaacgcaat gaccaccgct agaatcgaag taactctaag
     1741 taatgtagct ttcatctcaa ccttagcctt tctccagact tcgcagtcag aaacatttct
     1801 gacgcttcaa ataggtaacg cgtaaagcga gacaagattg ggccacatac ggaaaggtta
     1861 atttacggaa ta
//
LOCUS       DATCGC010000293         2633 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_436964, whole genome shotgun sequence.
ACCESSION   DATCGC010000293 DATCGC010000000
VERSION     DATCGC010000293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2633)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2633)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2633
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_436964"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..982
                     /locus_tag="VIJ87_02855"
     CDS             <1..982
                     /locus_tag="VIJ87_02855"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEY5443410.1"
                     /translation="KPNDPAGLRQLTADSIEGIRLRGALAQRLIDHAQPAFALIVFPE
                     THHAGHQMWHTAASDHQLYRGLNLFSAEPLLHQVYQEIDSQIADLAARANNAAIMVFS
                     LHGMKPAIGSPAFLPQLLCARGFSKTVDWNSQSWTERRRFLLSAIKKRTPLPLRHLYY
                     SLTPTETIQRVARPTMLPVYDWGKTRAFSLPTDQYGWIRINLEGREAKGIVPLMRYNE
                     TLEELESMLALLKDRDGQLLVRDVVRTASNEGEALHHKLPDLVVHWNDVAFVPGLRID
                     ETDFEAQQVGIKTGQHALDGFCIIRGDSELPSRTSIRAEEMGSLMSEMLL"
     gene            complement(1095..>2633)
                     /locus_tag="VIJ87_02860"
     CDS             complement(1095..>2633)
                     /locus_tag="VIJ87_02860"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY5443411.1"
                     /translation="RVPLPADNYGNLSAKTGHLLYAVGGAGYYGRQGDRTTSLRIYAL
                     KDRKETTLVEDMRGYTLSDDGSKVLVFQGPGANLYDATPQGERSRKAVSTAGLYVDRV
                     PAEEWNQIFNEVWRRYRDWFYVSNMHGFDWVALREQYKPLLKYVAHRSDLNYVIHEMI
                     AELTIQHAYIDGGDFNIPPRPRSGLPGARFELDKQAGRYRISKIFAGENEEEIYRSPL
                     TEVGVNASVGDYVLAIDGEELKATDDPYRLLRNKADNPVSLTLNKTPTMQGSRTVSYR
                     PLTDESQLVYLDWTNTNREKVSQATNGRVGYLHIPDMGAAGIREFIKWYYPQLRKEAL
                     IVDVRANGGGNVSRMLIERLRRKVLALNYSRTNDEAQTYPDGAFIGPMVALLDGNSAS
                     DGDIFPAMFREAGLGPLIGKRSWGGVVGITNRGQLIDGGSVNVPESGFASKNGEWIIE
                     GYGVDPDIEVDNDPQSVINGKDPQLERAIAEIMNKLKTPTKLPGKPAPPVKTINSSAT
                     SRSN"
BASE COUNT          611 a          688 c          672 g          662 t
ORIGIN      
        1 taagccaaac gatccggccg gtctccgaca gcttactgcc gattcaatag aaggaatcag
       61 actacgcggt gccctggccc aacgcctgat cgatcatgcg caaccggcat tcgcgttgat
      121 tgtctttcca gagactcatc atgccgggca tcaaatgtgg cataccgcgg cttctgatca
      181 tcagttgtat cgaggcctga atttgttttc tgcggaaccg ttgcttcatc aggtgtatca
      241 ggaaatcgat agtcaaatcg ctgacctggc agccagggcg aacaacgctg caatcatggt
      301 attttcactc cacgggatga agcctgcaat aggttcgccg gcttttcttc ctcaacttct
      361 ttgcgcccga ggattttcga aaaccgtcga ctggaattca caatcgtgga ccgagcggcg
      421 aaggtttctc ctctccgcaa taaagaaacg aacccctctt ccacttagac acctttacta
      481 ttcgcttacg ccgacggaaa cgattcaaag ggttgccaga cccacaatgc tacccgtcta
      541 cgattgggga aagacgagag ccttttcgtt gccaacagat caatatggtt ggatacggat
      601 taatttggaa ggacgtgaag caaagggaat tgttccgctc atgcgttaca acgaaacgct
      661 tgaagaactc gaatcgatgc ttgccctact caaggatcgc gacggacaac tacttgtgcg
      721 cgatgtggtc cgcaccgcgt cgaacgaagg cgaagctctg catcataaac tcccggattt
      781 agtagttcat tggaatgacg tagcatttgt tccggggctg agaattgacg agaccgattt
      841 cgaggctcag caggttggaa tcaagaccgg ccagcacgcg cttgatggtt tttgcataat
      901 cagaggtgat tctgagttgc cgtcgcgaac gtcgatcagg gcagaagaga tgggaagcct
      961 gatgagtgag atgttgttat agcattttgt cagactcgga aatcagccac agatgaacac
     1021 ggatgaaacg ggtcagcaat acttactatc agcattatcc gtttcattcg tgttcaagct
     1081 gtgaccgatg gtatctagtt cgatcgactc gtcgcgcttg agttgatcgt ctttactggt
     1141 ggcgctggtt tgccaggcag cttcgtaggc gtcttcagtt tattcatgat ctcggcaatc
     1201 gctcgttcga gttgcgggtc tttgccgttg attactgatt gcggatcgtt atcaacttcg
     1261 atatccggat ccacaccata accctcgata atccattcgc cattcttgct tgcgaaacct
     1321 gactcgggaa cgttaactga accaccgtcg atgagttggc cgcggtttgt tattcccaca
     1381 acaccacccc acgaacgctt tccaattaat ggtcccaggc ctgcttcacg aaacatcgcc
     1441 ggaaagatgt cgccatctga tgctgagttg ccgtcgagta aagcgaccat tggccctatg
     1501 aacgcgccat ctggataggt ttgagcttca tcgtttgtgc gtgagtagtt cagcgcgaga
     1561 accttccggc gcagacgctc tatgagcatt cgcgagacat tgccgccacc gtttgcacgc
     1621 acgtcaacaa tcagtgcttc cttacggagt tgtgggtagt accatttaat gaactcacga
     1681 atgccagcgg cacccatgtc aggaatgtgc aggtaaccca cgcgtccatt tgtcgcctga
     1741 ctgacctttt cccgattggt gtttgtccaa tcgagataga ccagctggct ttcatccgtc
     1801 agcggacgat acgaaacggt tcgcgaaccc tgcatcgtcg gtgtcttgtt gagcgtcagg
     1861 ctgaccggat tgtcagcttt gtttctcaac aagcgataag gatcgtcggt ggctttgagc
     1921 tcttcgccgt cgatcgcaag tacgtaatcg ccgacactcg cattcacacc gacctcagtt
     1981 aaaggtgagc gataaatttc ttcttcattc tcgcccgcga agatcttgga gatgcgataa
     2041 cgtccggctt gtttgtcgag ttcgaaacga gcacctggca aacctgatcg tggacgcggc
     2101 ggaatattaa agtcgccgcc atcgatatag gcgtgctgga tggtcaactc cgcgatcatt
     2161 tcgtgaatca cgtagttgag atctgagcgg tgtgcgacgt acttcagcaa aggtttgtac
     2221 tgttcgcgta gcgctaccca atcaaagccg tgcatgtttg agacatagaa ccaatcacga
     2281 tatcgacgcc aaacctcatt gaatatctgg ttccattctt ccgccggaac gcgatcgaca
     2341 tacagtccgg cagtcgatac ggccttacga ctgcgctcgc cctgtggcgt tgcgtcgtaa
     2401 agattcgcgc caggtccctg gaacaccaat accttcgaac catcgtcgga aagtgtgtaa
     2461 cctcgcatgt cttcgacgag cgtagtttct ttacgatcct tgagagcgta gatgcgtagc
     2521 gacgttgttc gatcaccctg gcgtccgtag taaccagcgc caccaactgc gtaaagcaag
     2581 tgaccagtct tcgctgaaag gttgccgtag ttgtctgccg gaagggggac tcg
//
LOCUS       DATCGC010000294         1410 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_5818, whole genome shotgun sequence.
ACCESSION   DATCGC010000294 DATCGC010000000
VERSION     DATCGC010000294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1410)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1410)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1410
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5818"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            146..712
                     /gene="dcd"
                     /locus_tag="VIJ87_02865"
     CDS             146..712
                     /gene="dcd"
                     /locus_tag="VIJ87_02865"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008829 - dCTP deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0009394 - 2'-deoxyribonucleotide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HEY5443412.1"
                     /translation="MSIKSDKWIRRMAAEYKMIEPFEAGQVKEVDGRRIVSYGTSSYG
                     YDIRCADEFKLFTNINSTIVDPKEFDEKNFVDFKGDSVIIPPNSFALARTVEYFRIPR
                     NVLTVCLGKSTYARCGILVNVTPFEPEWEGYVTLEFSNTTPLPAKIYANEGVAQVIFF
                     ESDEVCETSYKDRGGKYQGQRGVTLPKL"
     gene            718..1152
                     /gene="dut"
                     /locus_tag="VIJ87_02870"
     CDS             718..1152
                     /gene="dut"
                     /locus_tag="VIJ87_02870"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: protein motif:HMM:TIGR00576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004170 - dUTP diphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006226 - dUMP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0046081 - dUTP catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HEY5443413.1"
                     /translation="MSLTPNILHFKCLDPRATLPTRGSSSSAGLDLYSIEDITIGPQK
                     RIVARTGLAVAVPVGFYGRVAPRSGLAVKNGLDVLAGVIDSDYRGEVCCALLNTGDEA
                     INLPQGSRLCQLIIEQIITPAPEWANELDETTRGAGGFGSTG"
BASE COUNT          361 a          360 c          354 g          335 t
ORIGIN      
        1 acaaaggggg cctgtttacc aaagcggtgc caggccaccg caccaagagg agtcgtgcta
       61 ctttgtactt tccacttggc atgtctaaaa tgaccgctcg tttttcaaag ctcaaagttc
      121 aaagcacaaa gttcaaagct tcccgatgag tatcaaatca gacaagtgga ttcggcgcat
      181 ggccgccgag tacaagatga tcgaaccttt tgaggccggt caggtgaaag aagtcgacgg
      241 caggcgcatt gtttcttacg gaacgtcgag ttacggctac gacattcgtt gcgcagacga
      301 attcaaactc ttcaccaaca tcaacagcac aatcgtcgat ccaaaagagt ttgatgagaa
      361 gaactttgtc gacttcaaag gtgactcagt aatcattcca ccaaacagtt tcgcgctcgc
      421 ccggacagtt gaatactttc ggataccgcg aaacgttctc accgtctgtc ttggcaagag
      481 cacttatgct cgttgcggca ttctcgtaaa cgtcactcct ttcgaacctg aatgggaagg
      541 ctacgtcacc cttgagtttt caaacacgac tccactacct gcgaagatct acgcgaacga
      601 aggcgtcgcg caagttatct ttttcgaatc ggatgaggta tgcgagacgt cgtataagga
      661 tcgcggcggc aagtatcaag gtcagcgtgg agtgacgctt ccgaaactct aatctcaatg
      721 tcgcttactc caaacatact tcacttcaaa tgcctcgatc cccgcgccac tcttccaaca
      781 cgagggagtt cttcgtcggc tggcttagat ctctattcga tcgaagacat caccattgga
      841 ccgcagaaaa gaatcgtcgc cagaaccggg cttgcggttg ccgtcccggt tgggttttat
      901 ggccgggtcg ccccgcgctc gggccttgcc gtcaaaaatg gattggacgt tttggcgggt
      961 gtgatagatt ccgattaccg cggcgaagtg tgctgtgcgc ttttgaatac tggtgatgag
     1021 gcgattaatc ttccgcaggg cagccggctc tgtcagctga ttattgaaca gatcattacg
     1081 ccggctccgg aatgggcgaa cgagctcgac gaaacaacga gaggcgctgg cgggtttggt
     1141 tcaactggtt aggtcttgat ttctgtgcta cgtctgtgtt ctctgtgtct ccgtggtgcc
     1201 taatgccgag ccgagttagc cacagataca cagagaacac agagatagca cagagaagta
     1261 caaagcacta agcactaaga tcaagaggtg ctgcagaact cacccttccc cgtaactagt
     1321 aaatctttct aaaaggaatg cagaaaatag tgaataacaa atcctcgcgt ttcagcgcag
     1381 tgcagcaacg tctctcgatc acactgctag
//
LOCUS       DATCGC010000295         1196 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_37831, whole genome shotgun sequence.
ACCESSION   DATCGC010000295 DATCGC010000000
VERSION     DATCGC010000295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1196)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1196)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1196
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37831"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            163..>1196
                     /locus_tag="VIJ87_02875"
     CDS             163..>1196
                     /locus_tag="VIJ87_02875"
                     /inference="COORDINATES: protein motif:HMM:NF019313.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-loop NTPase fold protein"
                     /protein_id="HEY5443414.1"
                     /translation="MEALSRFSFSTEVQAAIRKGRALATTSQSSKRLTTSCLLFGLAE
                     GGRDDADFVKTPEFLFRQLTANGEEGYRNEFISKFPLQDYPSKGKLVYLNSIISQTTS
                     VSPDTIKVFELAEQISKHTYHPHSLAYEMEQVQDSSTDDVEGRIHARHLLAALLTAPE
                     GYGVLKRLSRIVTDIKKLRLEFFEFIKPITPDDDHEAWQQILIEGEVVNTQHEQNTQN
                     VRPAEIPDDIKQPLVAGFMADSWEGRDLLSITPDVNALASLVAAFKVEPPLAIGLFGE
                     WGSGKSHFMRQLKSRVEKLSRAARQSKLPQNQLGYYKNIVQIEFNAWHYIEGNLWASL
                     VDHIFANLRIS"
BASE COUNT          325 a          317 c          282 g          272 t
ORIGIN      
        1 agcccactca ctaccatctc ccaacgtgag caagataagt ttctggatga cttcgctgta
       61 tcggcgattg gtcttatgag tgggccaagc gaatccaaga cctcaagcga atcgtcgact
      121 tcaactgagt cagagagaaa aagttcgtcc agcacagacg ccatggaagc cctctccagg
      181 ttttcattct ccactgaggt ccaggctgcg ataagaaaag gccgggcact ggcaactacc
      241 tcacaaagca gcaaacgcct cacaacttcg tgcttgcttt ttggtctcgc cgagggtggc
      301 agagacgacg cggatttcgt aaagacacca gagtttctgt ttagacaact cacagcaaat
      361 ggcgaagagg gctatcggaa cgaattcatc tcaaaattcc cacttcagga ctacccttca
      421 aaaggcaaac tcgtttatct caactcgatt atctcccaaa caacatcagt ctcacccgat
      481 acgattaagg tatttgagct agcagaacag atttcgaaac acacttatca ccctcattcg
      541 ctcgcctatg agatggagca ggttcaagac agctcaactg atgatgttga aggtcggatt
      601 catgcacgtc atctcctggc tgctcttctg actgcgccag agggttacgg tgtccttaaa
      661 cgactttcaa gaatagtgac tgacatcaag aaactgcgtc ttgagttttt tgagttcatt
      721 aaaccgatta ctcccgatga cgatcatgaa gcttggcagc aaatcctgat cgagggggag
      781 gtagtaaaca cacaacatga gcagaacaca caaaacgtgc gaccggctga aatacccgac
      841 gacatcaagc agccgctcgt cgccggcttc atggccgact cgtgggaagg tcgagatcta
      901 ctaagcatca ctcctgatgt aaacgccctc gcctcgttag tcgcggcctt caaagttgaa
      961 cctccactgg cgatcggact attcggcgaa tggggctctg ggaagagtca cttcatgcgt
     1021 caactgaagt cacgcgtgga aaagttgtcg cgcgcagcgc ggcaatccaa gttgccgcag
     1081 aaccagttgg gttactacaa gaacatcgta caaattgagt tcaacgcttg gcattacatc
     1141 gagggaaatc tctgggccag tctcgtcgat cacatctttg cgaacctgcg catttc
//
LOCUS       DATCGC010000296         1502 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_137351, whole genome shotgun sequence.
ACCESSION   DATCGC010000296 DATCGC010000000
VERSION     DATCGC010000296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1502
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137351"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..494)
                     /locus_tag="VIJ87_02880"
     CDS             complement(<1..494)
                     /locus_tag="VIJ87_02880"
                     /inference="COORDINATES: protein motif:HMM:NF013898.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+ dependent nucleoside transporter N-terminal
                     domain-containing protein"
                     /protein_id="HEY5443415.1"
                     /translation="MVHHAVSVVGFIVFAGVAWLLSTNRRKVRWKTIAAGVALQLVIG
                     LIIFRFPFSHRILLWLNDAVLALLNASKSASVFLFGPLAASPGEQGSVGFILVFQVLP
                     VVIFFAAMTSMLYHLRVLQILVRLFAKVFHRTMRISGAESLSSSANIFLGIESALVVR
                     PYLE"
     gene            769..>1502
                     /locus_tag="VIJ87_02885"
     CDS             769..>1502
                     /locus_tag="VIJ87_02885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443416.1"
                     /translation="MVKNKFDDDVDILFTLPLSEFIGARKALSARLKKEGRGNDAEFV
                     TSLAKPPISAWTVNQLYWDHREEFDELIDAGQRFRKAQTSRNPNKGVDMRDALDARRE
                     ALTQLSDLATTLLIEAGHNPSLETLRRITTTLEAISAYASSTDGPAPGRLTKDVDPPG
                     FESLAGFTASAASTKSAGVSHSQKSSSVAKPQSKATPASKTSQLKEVHQAKIADAKVS
                     LQEAKKLLVDARAAVQRLEKQQEKIDR"
BASE COUNT          418 a          385 c          375 g          324 t
ORIGIN      
        1 ttttcgagat agggtcggac cacaagcgcc gattcaattc cgagaaagat gttagccgag
       61 ctcgagagtg attctgcgcc gcttattctc attgttcggt gaaagacttt ggcaaagaga
      121 cgcacaagaa tttgtagcac gcggaggtga tagagcatcg aggtcatcgc tgcaaagaaa
      181 atcaccacgg gcagaacttg aaacacgagg atgaagccaa cggatccctg ctctccagga
      241 cttgctgcga gtggtccgaa caaaaataca gaggcgctct tagatgcatt tagtaacgcc
      301 agcactgcgt cgttcagcca gagaaggatt cgatgggaaa aagggaagcg aaaaataatt
      361 agaccaatca caagttgtag agcgactccg gcggcgatcg ttttccaccg aacctttctg
      421 cgattagtgg agagtagcca tgcgactccc gcgaagacta tgaaccccac gactgataca
      481 gcgtgatgaa ccatatcctt ccatcctctt ttttgatcta attgaagcgt gacagaacgt
      541 agaagattac acaatcacgt ggcaaaacag tcagtatccc gacacgtcgg gatactgact
      601 gtttttctac gaagtcgcgc agatagaata agaccggatt tcaagattac aagatttaaa
      661 gcgagctgat tcgaattgga agcattgtga aaacctcata cttttcttaa cctacttccc
      721 ctaagttcgg tctaaatctt gtaattctga aatcctgtct actactcaat ggtaaaaaac
      781 aaattcgatg atgacgttga catcttgttc acgcttccgt tatcggaatt catcggcgcg
      841 cgcaaagcac tcagcgctcg actgaagaag gaaggacgcg gcaacgatgc ggaattcgtc
      901 acgtcgcttg ccaagccccc gatctccgcc tggaccgtca atcaactcta ctgggaccat
      961 cgcgaggaat ttgatgagct gatcgacgcg ggtcagcgtt ttcgtaaagc ccagacatcc
     1021 cgtaatccaa acaaaggtgt ggacatgcgc gacgcgctcg acgcccgacg cgaagccctc
     1081 acgcaattgt cagatctcgc gacaacattg ctgattgaag cgggccacaa tccttcgttg
     1141 gaaacgcttc gacgcatcac cactacactc gaagcaatat ctgcgtatgc atcgtcgacg
     1201 gatggtccag ctcctggccg tttgacgaaa gacgtcgatc cacccggttt tgagtcactc
     1261 gccggcttca ccgcaagtgc tgcgtcaacg aaatctgccg gtgtgagtca ttcgcagaag
     1321 tcgtcgagtg ttgccaagcc acagtccaaa gcgacgccgg ccagcaagac aagtcagctc
     1381 aaagaagtgc atcaagcaaa gattgctgac gccaaagtct cactacagga agctaagaag
     1441 ttgttggttg acgcgcgcgc cgcggtgcag cgtcttgaaa agcagcagga gaagatcgac
     1501 cg
//
LOCUS       DATCGC010000297         2303 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_104058, whole genome shotgun sequence.
ACCESSION   DATCGC010000297 DATCGC010000000
VERSION     DATCGC010000297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2303)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2303)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2303
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104058"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2268)
                     /locus_tag="VIJ87_02890"
     CDS             complement(<1..2268)
                     /locus_tag="VIJ87_02890"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY5443417.1"
                     /translation="MLIFRDVTAQRLVERDKANQLLTARLLASIVESSDDAIISKTLA
                     GIIQSWNTGAERIFGFTSDEAVGKHISLIIPPERITEEDQIIASLKAGKRIDHFETER
                     LTKDGRRVFISLTVSPIKDEAGNVVGASKIVRDITAQRRLADRERELLEKAAEANAKF
                     QAFFDQGALFAGIMDLDGTLLEPNLLSCEGCGFSREQVVGKKFWEGPWWTPSPKLVEQ
                     IRTASARAAEGNTYRAEMPYFVGDGSERVADVTIQPIRNESGEVIFLAPTGTDITDRK
                     RAESDREKFVALVETSTDFIGMCDINGIPFFINRAGLGMVGLENLDEARRTPVAEFFF
                     PEDQDRIMNEFFPMVMEKGHGEVEVRFRHFKTGEARWMAYKVLKLVDAEDESIVFATV
                     SQDITGRKHMEDSLLRLTSDLFEADRRKNEFLATLSHELRNPLAPMSNMLGVLKHAEG
                     DSNLINRAHETLERQLAQMVRLVDDLLDLNRITHDRLELRKGEVELSSVIHQAVEAAR
                     PLVETANHKLHITLPDEPIYLNGDPARLTQVFSNLLNNSAKYTQPGGTIWLSATRTEG
                     EVAVTVKDNGAGIPNDKLGSIFDMFTQLDQSSERTQGGLGIGLTLVKRLVEMHNGSIE
                     ARSAGAGQGSEFTVRLPILQKATDRATPSTVSPKDSTSNRRILIVDDNFDSAESLAML
                     LEMTGNNTSMAHDGLAAIEAIKKQRPEVVLLDIGLPKLSGHEVCRLIRQESWGKEIIV
                     IALTGWGQEEDRRKSK"
BASE COUNT          507 a          640 c          562 g          594 t
ORIGIN      
        1 ctttgacttg cgccgatctt cttcctggcc ccatcccgtt agcgcaatca ctatgatctc
       61 tttgccccac gactcttgtc ggataagtcg acagacctca tgcccgctta gcttgggcag
      121 tcctatgtcc agaagcacga cttctggccg ttgcttctta atcgcctcaa tagccgcaag
      181 tccatcatgt gccattgagg tgttgttgcc ggtcatttct aaaagcatgg cgagtgattc
      241 ggcggaatca aagttgtcat caacgatcag gatccgacga ttgcttgtcg aatctttcgg
      301 agagacggtc gaaggcgtcg ctcgatcggt cgctttctga agaatgggaa gacgcactgt
      361 aaactcgctg ccctggccgg cgccagcgct tctcgcttca atcgatccgt tatgcatttc
      421 aactaatcgc ttcaccaacg tcaggccaat tcccagccca ccctgtgtac gttcagacga
      481 ttgatcgagc tgagtaaaca tgtcgaagat actccctaac ttgtcattgg gaatgcctgc
      541 gccattgtct ttgaccgtta ccgcaacctc gccctccgtc cgtgttgcgc tcagccagat
      601 tgttccccca ggttgagtgt acttggcgct gttattgagt agattgctga atacctgggt
      661 gaggcgcgca ggatcaccgt tcaggtaaat gggttcgtca ggcaacgtaa tgtgaagttt
      721 atgattggcg gtctcgacta gtggccgagc tgcttcaaca gcctggtgaa ttacggacga
      781 cagttcaact tcacccttac gcagctcaag ccgatcgtgc gtgattcggt ttaagtcgag
      841 gagatcgtca accaaacgga ccatttgcgc taactggcgc tcgagggttt cgtgtgcgcg
      901 attaataaga ttgctatcac cttctgcatg cttcaaaact cccagcatgt tgctcatcgg
      961 agccagcgga ttcctaagct cgtgagagag cgttgcaagg aactcgtttt tacgccggtc
     1021 ggcttcgaac aagtcggatg tcaaccttag caggctatct tccatatgct ttcgcccagt
     1081 gatgtcctga ctaaccgtgg caaaaacgat cgattcgtcc tcagcatcga ctaacttcaa
     1141 aactttgtag gccatccagc gagcttcacc cgtcttgaaa tgtcgaaacc ggacttccac
     1201 ttctccgtgg cccttctcca tgaccattgg aaagaactcg ttcatgatcc gatcttgatc
     1261 ttccggaaag aagaactccg ctactggcgt tcgccgcgct tcgtcgagat tctccagccc
     1321 gaccattcct aaaccagcgc gattaatgaa aaacggaata ccgttaatgt cgcacatgcc
     1381 gataaagtcg gtactggttt caacgagtgc gacaaacttt tcgcgatcgc tttcagcgcg
     1441 tttgcgatca gtgatgtccg tacccgttgg cgcaaggaag atcacctcgc ctgattcatt
     1501 tcgaatgggc tggattgtca cgtccgcaac gcgctcgctg ccatcgccaa caaagtaggg
     1561 catctctgca cggtaagtat tcccttcagc ggcccgagca gatgcggttc taatttgctc
     1621 aactaatttc ggcgaaggtg tccaccaagg gccttcccag aatttctttc cgacaacctg
     1681 ttccctggaa aagccgcagc cctcgcacga caggaggttc ggttcgagca gggttccgtc
     1741 gagatccata atgccggcaa acaaagctcc ctgatcaaag aaagcctgaa acttcgcatt
     1801 cgcctcggct gccttttcca gtagttctcg ctcacgatcg gcgagtcgtc gttgcgcagt
     1861 aatatcgcga acaatcttcg atgcgccaac gacattgccc gcttcatctt tgatcggcga
     1921 tacagtgaga gaaatgaaga ctcgccggcc gtccttcgtt agtcgttcgg tctcgaagtg
     1981 gtcaattcgt tttccggctt tcagactcgc aataatttgg tcttcttcgg tgatacgttc
     2041 cggcgggatg atgagcgaaa tatgcttgcc tacagcttcg tccgaagtaa aaccgaagat
     2101 gcgctcagcg ccggtgttcc agctttgaat aatacctgcc agggttttac tgatgattgc
     2161 atcatccgaa gattctacga tcgacgcgag cagtcgcgcg gttagcagtt ggtttgcttt
     2221 gtcacgctct acaaggcgct gcgccgtaac gtctctgaag atcagcacgc atccggtaac
     2281 aattcctctc tcattgcgaa tcg
//
LOCUS       DATCGC010000298         1189 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_104077, whole genome shotgun sequence.
ACCESSION   DATCGC010000298 DATCGC010000000
VERSION     DATCGC010000298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1189)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1189)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1189
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104077"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            87..326
                     /locus_tag="VIJ87_02895"
     CDS             87..326
                     /locus_tag="VIJ87_02895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443418.1"
                     /translation="MRRLDSLRYISDLAKAELSRAFVLMQYFGYLRRNPSDLPDGDYT
                     GYEFWLTKLNQFHGDYIAAEMVKAFLNSAEYQARF"
     gene            complement(477..896)
                     /locus_tag="VIJ87_02900"
     CDS             complement(477..896)
                     /locus_tag="VIJ87_02900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443419.1"
                     /translation="MGWLTDIFKDVPLSPELREKLATVEAESDALKTDNVILKDDLRE
                     ARAQILTLEKRLEQFAHHSELDETDALILKEIALTSEPAATYLVTKLNLELSVVELRL
                     EQLTDLDYLSTWSIGGVERYSLEPKGREYLIKKNLIS"
     gene            complement(968..>1189)
                     /locus_tag="VIJ87_02905"
     CDS             complement(968..>1189)
                     /locus_tag="VIJ87_02905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443420.1"
                     /translation="SQIVAAIKHISPELKLITLARFCYMFVNSGKLYPNESFITTDRR
                     FHGLSEATSFRGSAGNVFVAAQSDHANMS"
BASE COUNT          287 a          286 c          304 g          312 t
ORIGIN      
        1 aagcttttct gaattcagct gaataccagg cgcgattcaa atgaatgtac cgcaggctgt
       61 ccagcctgcg gctgctgtaa attaaaatgc gcagactgga cagtctgcgc tacatttctg
      121 acctggccaa agccgaactg agcagggcgt ttgttttgat gcaatacttt ggctacttgc
      181 gaagaaaccc gagcgacctt ccggatggcg actacacggg ctatgagttc tggctcacca
      241 agctgaatca gttccatggt gactatatcg ccgccgaaat ggtaaaagct tttctgaatt
      301 cagccgaata tcaggcgcga ttctgaatgt accgcagcct gtccagcctg cggttgctgt
      361 aaatcaaaac gcgcagactg ggtggtgatg cagttcgatg tccgacaagc tttagcttgt
      421 cgaagcttgg cgacaaactg aagtttgtcg gacatttatt ccaaactgcc gcaagatcag
      481 ctgatcaggt ttttcttaat gagatattcc cggccttttg gttcgagtga gtaacgctcg
      541 acgccgccga tgctccaggt gctgaggtaa tcgagatcgg tgagttgttc caaacgaagt
      601 tcgacaaccg acaattcgag gttaagtttt gttaccagat aggtggcggc gggctcactg
      661 gtgagggcaa tctccttcag gatgagcgcg tcggtttcat ccagctcaga atgatgtgca
      721 aactgctcga gtcgtttttc gagtgtgagt atttgggctc tggcttcgcg caggtcgtct
      781 ttgagaatca cattgtccgt cttcagcgca tcgctctccg cctcaaccgt tgccagtttt
      841 tcgcgaagct cgggtgagag cggaacgtct ttgaagatat cagtcagcca acccatgatt
      901 cagtcttata tgatagtaat tctcgaacca taaacatatg aggatttgac ggtgatgctg
      961 cccaccgtca agacatatta gcatgatcgc tctgggccgc gacgaacacg tttccagcgc
     1021 ttccgcggaa acttgttgcc tcgctcaaac catgaaagcg ccgatccgtt gtgatgaatg
     1081 attcgttcgg gtataacttc cccgaattaa caaacatgta acagaaacgc gctaatgtaa
     1141 tcagctttaa ttccgggctg atatgtttaa tggcagccac gatctgaga
//
LOCUS       DATCGC010000299         1288 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_337077, whole genome shotgun sequence.
ACCESSION   DATCGC010000299 DATCGC010000000
VERSION     DATCGC010000299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1288)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1288)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1288
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_337077"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..369)
                     /locus_tag="VIJ87_02910"
     CDS             complement(<1..369)
                     /locus_tag="VIJ87_02910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443421.1"
                     /translation="MTQSIERRPDHIKFTGRILFLTEDTNLIRQQLEANSDPDAASCL
                     ELELAQRLQNGDLPLMSNISTDEITPGWVCFYYDETLGQYVYVGMREGAVQKDEVKAG
                     NFAVVVSGLSKGCGSSRETAP"
     gene            659..>1288
                     /locus_tag="VIJ87_02915"
     CDS             659..>1288
                     /locus_tag="VIJ87_02915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443422.1"
                     /translation="MRLSLVKLVAGAFLLMSVFTVGSVSVVFGQETDDPVKIEIYTRF
                     YNNRENNKGAAYQAARAYLDKYTKDKDQYVDYLQKWVATYERDERKRMLPGLINEKNF
                     TEAYKVGAKILADEPDYLRAQIDLGYAGYIALSSNNQTYSAEALGHARKAIQAIEAGK
                     VPTEWAPFKGKDDTLAYLNFAVGFLTLKTAPEQAIDAFIKAAQYESEIKK"
BASE COUNT          359 a          316 c          312 g          301 t
ORIGIN      
        1 aggagcggtt tcccgcgacg agccgcaacc tttggagagc cctgacacta cgacagcaaa
       61 gtttccagcc ttcacttcat ctttttggac cgctccctcg cgcataccga cgtagacata
      121 ctggcccagg gtttcgtcgt aataaaaaca aacccaaccc ggcgtaattt catcggttga
      181 aatattgctc attaatggga ggtcaccatt ctgaagccgc tgagctaatt ccaactccag
      241 gcaacttgct gcgtccggat cagaattggc ttcgagttgc tgacggatca ggttggtgtc
      301 ttccgtaaga aacagaatgc gtcctgtgaa tttgatgtgg tcaggtctgc gctcgattga
      361 ttgagtcatg aattcgttaa gattccttga gtttagtggt gctttgactt ggtacctggt
      421 taatccctat gttaaccaaa tgtccctgaa catcgaacaa agtacaaaaa tcaaagcgca
      481 aagtacttag aacgactatt gcacatatcg gactttcggg cttcgctgtg atattttctt
      541 tcaaacgtgc gtaattataa ccgcacgctg ataaaacctt taacgggcaa ccaggcgtct
      601 aagctaacta gccggaagcg aggctaaagt caggaaaggt agcggaggta gggtgactat
      661 gaggttgagt ttggtgaaac ttgtagcggg tgcgttcctg ctgatgtcgg tctttacggt
      721 cggatcagtt tccgttgttt ttgggcaaga gaccgacgat ccagtcaaaa tcgaaatata
      781 cacacgcttc tataacaacc gcgagaacaa caagggagca gcctaccaag ccgctcgtgc
      841 ctatctcgac aagtacacca aagacaaaga ccaatatgtc gactatctac aaaaatgggt
      901 cgccacatac gaacgcgatg agcgcaagcg aatgcttccc ggcctgatca acgaaaagaa
      961 cttcaccgaa gcttacaaag tcggggcaaa aatcctggct gacgaacctg actacttacg
     1021 agctcagatt gatctaggct acgcgggcta catcgccctt tcctccaaca atcaaaccta
     1081 cagtgctgag gccctgggac acgcgcgaaa agcaattcaa gcaatcgagg ccggcaaggt
     1141 tccgactgag tgggcgccgt tcaaaggcaa ggacgataca ctcgcctacc ttaatttcgc
     1201 agttggtttc ttaacgttga aaacggcacc tgagcaggcg attgacgcat ttatcaaagc
     1261 ggcccagtac gaaagtgaga ttaagaaa
//
LOCUS       DATCGC010000300         1694 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_270545, whole genome shotgun sequence.
ACCESSION   DATCGC010000300 DATCGC010000000
VERSION     DATCGC010000300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1694)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1694)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1694
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270545"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1471
                     /locus_tag="VIJ87_02920"
     CDS             <1..1471
                     /locus_tag="VIJ87_02920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443423.1"
                     /translation="RGVGVALATLLVVTLVAGVWYLKFRSSASATTGSIKSIAVLPFE
                     NKSNDADADYLSDGLAESLIFRLSQLPDLKVSPTSSVVPYKGKEKDIAKIAGELGVDS
                     VMTGRLLKRGDNLTITVELVDVKNNKSLWGEQYERKMSDLLTTQREIAMAITEKLKLK
                     LVGNDARMMTKQYTTSNDAYQLYMKGRFHFAKRTKQDLLRSIEFYEQAITLDPKYALA
                     YVGVAESWQVMPSFAYLSPDEAIPQAKKAVAKALELDPDLPEAHTAHGLILATYEWDW
                     VAAEREFKRSFELDPKIALAHFRYAWVELSPQGRHEEAITEMKRAMDLDPLSLIQGAN
                     FAAVYIYARQYDNALDQAMKTYDLDHGFFAAQNWLAHAYNVKGMYPQAIAIAEKSLGT
                     DFEMLPQLGYAYAKLGRRKEAEDLVAAWLAKKTYVSSYWVAVVYAALGEKDKAFAQLE
                     KAYKAHDWFMERVRTDPFLDPLRDDPRLADLIKRVGLAD"
     gene            complement(1446..>1694)
                     /locus_tag="VIJ87_02925"
     CDS             complement(1446..>1694)
                     /locus_tag="VIJ87_02925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443424.1"
                     /translation="QSPGLLQPWDIHAVEINPEGVASFASARSGFAGAQVATPSGLKP
                     KTNHYPGLTPKHVNPGLCDVTASRYRSAIFPNLLTRHA"
BASE COUNT          416 a          422 c          469 g          387 t
ORIGIN      
        1 acgtggcgtc ggtgtcgcat tggcaacttt gctagtcgtg actctggttg ccggtgtctg
       61 gtacttaaag tttcgcagtt cggcctccgc tacaactggc tcaatcaaat ccatcgctgt
      121 cctcccgttc gaaaacaaga gtaacgacgc agatgcagac tatctctctg acggattagc
      181 agagtcgctg attttccgct tgtcccaact tccggatttg aaagtgagtc caaccagttc
      241 ggtcgtgcct tacaaaggaa aagagaagga catcgcaaag atagccggcg aactcggtgt
      301 tgattcagtt atgacgggcc gcctgcttaa acgaggcgac aacctgacca ttacggttga
      361 attggttgac gtgaagaata acaagtcgtt gtggggcgaa cagtacgaac gaaaaatgtc
      421 ggacctcctg acgacgcagc gtgagattgc tatggcgatt accgagaagc taaaactcaa
      481 gcttgtcggt aatgacgcga gaatgatgac caagcagtac acaacgagta atgatgcgta
      541 ccaactttac atgaagggcc gcttccattt tgccaaacgg accaagcagg atctgttgcg
      601 tagtatcgaa ttctatgagc aggcgataac tctcgacccg aaatatgcgc tagcttacgt
      661 aggtgtagct gagtcgtggc aggtaatgcc gtcatttgcc tacctgtcgc ccgacgaggc
      721 gatcccacaa gcaaagaaag cggtagccaa ggcgctcgaa ctcgaccccg atctgccaga
      781 ggctcacacg gcccacggat taatcctcgc tacgtatgaa tgggattggg ttgctgcgga
      841 gcgtgagttc aagcgttcat tcgaactcga cccaaagatc gcgctcgcac attttcgcta
      901 cgcctgggtg gaactgagtc cacaaggtcg ccatgaagag gcaatcaccg agatgaagcg
      961 cgcgatggat ttggatccat tgtccctgat acagggcgcc aactttgccg ctgtctatat
     1021 ttatgctcgg caatacgaca atgcgctcga ccaggcaatg aaaacttacg atctcgatca
     1081 cggctttttc gcggcgcaga attggttggc ccatgcatac aacgtaaagg gaatgtatcc
     1141 gcaagctatc gcgatcgctg aaaagtcgtt gggaactgac tttgaaatgc ttccgcagct
     1201 gggttacgcc tatgcgaagc tgggtcgcag gaaagaagct gaggatctgg tggcggcttg
     1261 gctagcaaaa aaaacatacg tatccagtta ctgggttgcc gtcgtctacg ctgcgttggg
     1321 tgagaaagac aaggcttttg ctcagctgga gaaagcgtac aaggcgcatg actggtttat
     1381 ggagcgagtc agaaccgatc ccttcctcga tccgttgcga gatgatccgc gcctcgctga
     1441 tttgatcaag cgtgtcgggt tagcagatta ggaaagattg ccgatctgta ccgcgaagct
     1501 gttacgtcac aaagcccagg gttgacgtgc tttggcgtca accctgggta atgattcgtt
     1561 ttgggtttca accccgaagg ggttgcgacc tgcgctcccg caaaccctga tcgagcgctc
     1621 gcgaaggacg caaccccttc ggggttgatt tcaaccgcat ggatgtccca gggttgaagc
     1681 aaccctgggc tttg
//
LOCUS       DATCGC010000301         2045 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_303895, whole genome shotgun sequence.
ACCESSION   DATCGC010000301 DATCGC010000000
VERSION     DATCGC010000301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2045)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2045)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2045
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_303895"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2045
                     /locus_tag="VIJ87_02930"
     CDS             <1..>2045
                     /locus_tag="VIJ87_02930"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY5443425.1"
                     /translation="EILPPQIIVSTNYTGADAITIEQSVSTPIEQQMNGVDNMLYMQS
                     INANDGSQQLIVTFGVDTDVNIDQVNVQNRLSQAEPNLPTDVSQFGLTTRKSTGLPML
                     VFSLYSPNKTYDSLFLANYANININDVLYRVPGVGEVRVFGSSDYAMRIWVKPDVLAK
                     LGLGVPDLTKAVQEQSTVNPSGRLGAAPAPAGMEKTYTVRAQGRLQTPEEFGQVVVRE
                     NTDGSVVRLKDVARIELGALNYQQSSRMNGQPSAIVAVFQAPGSNALATANGLQRTMA
                     QLKQRFPADLDYAVVLDTTRAVTEGMKETVTTLLEAMVLVIIVVFLFLQNWRATLIPV
                     IAVPVSLIGTFAVFPLLGFSINTLSLFAFVLAIGLVVDDAIIVVEAVEHHIEEGKSPR
                     DATIQAMKDVGGPVIAIALILSSVFLPVAFMGGIQGRLNNQFAMTIAVSMLISAFNAL
                     TLSPALAALLLRPRKKSKGVVGRFFGGFNRVFDKIMHGYLNWSHALLRKAVIGVVIIG
                     GFTVADAFIGRTMPTGFLPEEDYGYAMLHVQLPPAASLERTDQVMKKVENVLAHTDGV
                     QYYTGIGGFSLLNRISASYQGFFFMSLKPWDERTSRELKAQAILAKINGALATQIPEG
                     MAFAFMPPSIPGLGSAGGFSLWIQDRSGGSVEFLDQNVKAFLAAAHKRPELAGVITQ"
BASE COUNT          486 a          523 c          541 g          495 t
ORIGIN      
        1 cgagatctta cccccacaga tcattgtctc taccaactac accggcgctg acgcaatcac
       61 gatcgagcag tctgtttcca cgccaatcga gcagcaaatg aatggcgtcg acaacatgct
      121 ctacatgcaa tcgatcaacg ctaacgatgg tagccagcag ctgatagtga cgtttggtgt
      181 ggacactgac gtcaacatcg atcaggtgaa cgtgcagaat cgactgtcac aagcggagcc
      241 taatcttcca actgacgtga gccagtttgg tctaacaacc cggaagtcca ccggattgcc
      301 gatgctggtg ttttcgctct actctccaaa caaaacgtac gattcgttgt tccttgcgaa
      361 ctacgcaaac atcaacatca acgatgttct ttaccgggtc cccggtgttg gcgaagtaag
      421 agtgtttggt tcgagcgact acgcaatgcg tatttgggtt aagccggatg tcctggcaaa
      481 actcggcctg ggagtacccg acctgacaaa agcggttcag gaacaaagca ctgttaatcc
      541 ttcgggtcgg ctgggagcag cacctgcacc cgcaggtatg gaaaagacct acacagtccg
      601 ggcccagggg cgactgcaga ctccggaaga atttggacaa gttgtagtac gagagaacac
      661 cgatggttcc gtcgtgcgct tgaaagatgt cgcacgcatt gaattgggcg cactcaatta
      721 tcaacagagt tcgcgcatga atggtcaacc gagtgccatc gtggcggtat ttcaggcgcc
      781 aggatcgaac gcccttgcaa ccgccaacgg gctgcagcgt acgatggccc aactaaagca
      841 acgttttcct gctgacctcg actacgcagt tgtccttgat actacgcgag ctgttaccga
      901 aggcatgaag gagactgtta ccacgttgct ggaagcgatg gttcttgtga tcatcgttgt
      961 gtttctgttt ctgcaaaact ggcgcgctac gctcataccg gtgatcgccg ttccggtatc
     1021 ccttatcggc acctttgccg tctttccact gttgggattc tcgataaaca cgttgtcctt
     1081 gttcgcgttt gtccttgcga taggactggt ggtcgacgac gcaatcatcg ttgtcgaagc
     1141 agtcgagcac cacatcgaag aagggaagtc tccgcgcgat gcaaccatcc aggcaatgaa
     1201 agatgttggt gggcctgtga ttgcgatcgc gctaattctt tcctcagttt ttctaccggt
     1261 cgcgtttatg ggaggaatcc agggtcgtct aaataatcag ttcgcgatga cgatagcagt
     1321 ctcgatgctg atctcagcct tcaacgcact gacgctttca cctgcgttgg ctgcgttgtt
     1381 actaaggccg cgaaagaaat cgaaaggtgt ggtcggtcga ttcttcggtg gcttcaaccg
     1441 agtgttcgac aaaataatgc atggctatct gaactggagt catgcgttgc tgcgaaaagc
     1501 cgtgataggc gttgtgatca ttggtggttt cacagtggca gatgccttca ttgggcggac
     1561 tatgccgaca ggttttcttc ccgaagaaga ctacggctac gcaatgttgc atgttcagct
     1621 tcccccagcc gcatcgctgg aacgaaccga tcaagtcatg aagaaagtag aaaacgttct
     1681 agcccacaca gacggagtgc agtactacac cgggatcggc gggtttagtt tgctgaatcg
     1741 catctcggcc agttaccagg gtttcttctt tatgagtctc aaaccatggg acgaacgtac
     1801 gtcaagggaa ctaaaagcac aggcgattct tgccaagatc aatggagcac tcgccacaca
     1861 aattcccgaa gggatggctt tcgctttcat gccgccatcg attcctggtc tcggtagcgc
     1921 tggaggtttc tcactgtgga tacaagatcg aagtggtggc tcagtagaat ttctcgatca
     1981 gaacgtgaag gcctttcttg ccgccgcgca taaacgtccg gagttagccg gagtgattac
     2041 tcaat
//
LOCUS       DATCGC010000302         3036 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_37919, whole genome shotgun sequence.
ACCESSION   DATCGC010000302 DATCGC010000000
VERSION     DATCGC010000302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3036)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3036)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3036
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37919"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..214)
                     /locus_tag="VIJ87_02935"
     CDS             complement(<1..214)
                     /locus_tag="VIJ87_02935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443426.1"
                     /translation="MTVTKEIEELLRREPKVLWSALKNVESLRRLVEKLPIFSGTIYF
                     LVETQHRKRVEQALDAANARPASAVRF"
     gene            317..2968
                     /locus_tag="VIJ87_02940"
     CDS             317..2968
                     /locus_tag="VIJ87_02940"
                     /inference="COORDINATES: protein motif:HMM:NF014026.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HEY5443427.1"
                     /translation="MKRTRARILIAIVTLMTVNVLYAQNGDKPAYLNHTLPAQQRAED
                     LVRRMTVEEKVTQLVNQSRAIPRLNIPDYDWWSEASHGIATRGTTEFPNPVGLAATFD
                     TDAIHRMAVVIGTEGRIKHVQGMRDGHSDIFEGLDFWAPNINIFRDPRWGRGQETFGE
                     DPFLTARLGVAFVTGMQGDDPKYYRVISTPKHFAVHSGPEPSRHKDDIIVSKHDQLDT
                     YLPAFRATVTEGRAGSVMCAYNSINGQPACANEFLLVDQLRKKWNFQGYVVSDCEAVV
                     NIFRDHHFTKTQPEASALSLQRGMDNECIDFSKVKDDHDYKPYLDAYKQGILKESDID
                     TALIRLFTARIKLGMFDPPELVPYSQIDEKKLDSAEHRAMARDIANKSMVLLKNDGIL
                     PLKKGATKIAVVGPLADQTRYLLGNYTGTPTHTVSVLEGLKAEFPEAQINFVPGTKFL
                     RKDGVAVPSSVFTTAEGQPGLTQEFATGQLFGGKPKVLTTRSATSVELRAGDVPWEAA
                     NKSPLLVQWSGFLTPTETGEFIIGLRFEGGFARVLVDGKQVAQGFGGPGQVESKTGRV
                     RLEQGKKVEIKVNYSLGTGEPKLAQLIWSKYDTKPSADVVEAAKSADVVVAVLGITSE
                     LEGEEMPVDEEGFKGGDRTSLDLPKPEQELLEAVAATGKPVVLVLANGSALSVNWAKQ
                     NVNAIIESWYAGEEGGAAIAETLSGKNNPAGRLPVTFYTGVDQLPPFGEYAMNNRTYR
                     YFKGTPLYPFGYGLSYTTFSYTGLTVPKNPIKAGDPLVVDVTVKNTGNREGDEVAQLY
                     LSFPNVAGAPLRALRAFKRVHLKPGEAQKVRFELKERDLSMVSEAGEPLIAEGQYSIS
                     IGGGQPDTGAPTVVGRFQVKGTKVLPE"
BASE COUNT          766 a          757 c          823 g          690 t
ORIGIN      
        1 ggaatcgaac cgccgacgcc ggccttgcat tcgctgcatc caatgcttgc tctactcttt
       61 ttctgtgctg tgtctccacc aggaaataaa ttgttccgct aaagatcggc agcttctcaa
      121 cgagcctgcg taaactttca acatttttca aggcggacca caagactttt ggctctcttc
      181 ttagtaattc ctctatttct ttagttacag tcatggcgaa ctatcctccg agtgtatgct
      241 gcaatgaacc tgtgctggag agccaatgtg tgactgtgtg accgtcattc gatcatggtt
      301 tccctcaagg agagagatga aaagaaccag agcccgaatt ctgatcgcga ttgttacctt
      361 aatgaccgtg aacgtccttt acgcgcagaa cggggacaaa cccgcatact tgaatcacac
      421 gttacctgcg cagcaacgtg ccgaggacct cgtccgccgc atgactgtgg aagaaaaggt
      481 tacgcaactt gtgaatcagt cgcgcgcgat accgcggctt aatattcccg actacgactg
      541 gtggagcgaa gcctcgcacg gcatcgccac aaggggcacg actgagtttc cgaatccagt
      601 tggattagcc gcgacatttg atacagatgc gattcaccgc atggctgttg taattggcac
      661 ggaagggcga atcaagcacg tgcagggcat gcgcgatggc cacagcgaca tcttcgaggg
      721 actggatttc tgggcaccta acatcaacat ctttcgcgac ccacgctggg gccgcgggca
      781 ggagactttc ggggaagatc cttttctgac ggcgcgattg ggtgtggctt tcgtcactgg
      841 aatgcaggga gatgacccta agtattaccg tgtcatctca actccaaaac acttcgccgt
      901 acatagcgga cctgagccgt cgcgtcacaa ggacgacatc atcgtcagca agcacgatca
      961 gttggacaca taccttccag cctttcgcgc gaccgttaca gaagggcgtg cagggtctgt
     1021 catgtgcgca tacaacagca tcaacggaca accagcgtgt gctaatgaat tcttgctcgt
     1081 agatcagttg cgtaagaagt ggaacttcca gggttacgtc gtttcggatt gcgaagctgt
     1141 cgtcaacatc tttcgcgatc atcacttcac aaaaacacag cctgaagcct ctgccctgtc
     1201 gttgcaacgc ggtatggaca acgagtgcat tgatttctca aaagtaaaag acgaccacga
     1261 ctacaagcca tatctcgatg cgtacaagca aggcattctt aaggagagtg acatagacac
     1321 agcactgatc cgattgttca cagcgcgaat aaaactcgga atgttcgatc cgcctgagtt
     1381 agttccgtat tcacagatcg acgaaaagaa acttgatagt gctgaacatc gtgcgatggc
     1441 gcgcgacatt gcaaacaagt cgatggtgct gctgaagaat gatggcatcc tgccgctaaa
     1501 gaagggcgca accaagatcg ccgtcgttgg accactcgct gatcagacga ggtatctgct
     1561 cggcaactac actggaactc caacgcacac ggtctctgtg ttggaaggac tcaaagcgga
     1621 gtttccggaa gcccagatca actttgttcc gggaacaaag ttccttcgta aggacggagt
     1681 tgcggttccg tcttctgtct ttacaactgc agaagggcag ccggggctca ctcaagaatt
     1741 tgcgacagga cagttgttcg gaggaaagcc caaggtactt acaacacgct cggcgacttc
     1801 ggttgagctg agggccggcg atgtcccttg ggaagcggcg aacaaatctc cattgttagt
     1861 tcagtggagc ggattcctta cgccaactga gacaggcgag ttcattatcg gtttacgttt
     1921 tgaaggtggc ttcgctcgcg tgcttgtgga tggaaagcag gttgcacaag ggtttggtgg
     1981 tccgggccaa gtcgagtcga agactgggcg cgttcgtctt gaacaaggta aaaaggtaga
     2041 gatcaaggtt aattattcgc ttggcactgg cgagccgaaa ctcgcgcagt tgatctggtc
     2101 gaagtatgac acgaagccaa gcgccgatgt ggtcgaagcg gcaaagagcg cagacgtggt
     2161 agtcgcggtg cttggtatca cgagtgaact tgaaggcgaa gagatgcctg ttgatgaaga
     2221 aggcttcaaa ggtggtgacc gaacgagtct cgatctacca aagcctgaac aggagttact
     2281 cgaggcagtg gcagcgactg gaaaacccgt tgtcctggtt cttgcaaatg gaagtgcact
     2341 ctcggtgaac tgggctaagc aaaatgtgaa cgcgatcatc gaatcatggt acgcaggaga
     2401 agagggaggt gcagctatcg cagaaacgct ctccggaaaa aacaatcctg ctggtcgtct
     2461 tcctgtcacg ttctacactg gcgtcgatca gttaccgcca tttggagaat acgccatgaa
     2521 caacaggacg taccgctatt tcaaaggtac gcctttgtat ccgttcggat atggactgag
     2581 ctacacgacg ttctcttaca caggtcttac tgttccaaag aatccgatca aggccggcga
     2641 tccactcgtt gtagatgtaa cggtcaaaaa caccggcaat cgtgaaggag acgaagtagc
     2701 acagctctat ctgagtttcc cgaacgttgc tggagcgccg ctgcgtgcgc tgcgtgcatt
     2761 caagcgcgtt catctcaagc caggagaagc gcagaaagtt cgcttcgaat tgaaagaacg
     2821 cgacctgagt atggtgagtg aggcaggtga accgcttatc gctgaaggac agtattcaat
     2881 ttcgatcggt ggaggacaac ccgatactgg agcaccgact gtagtgggaa ggttccaagt
     2941 caaaggaacg aaggtgcttc ctgagtagtc gtttcactat cagttgcggc gcggctccat
     3001 ctgaacaggc tttgcaatct cctctcattc tccccc
//
LOCUS       DATCGC010000303         1284 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_303915, whole genome shotgun sequence.
ACCESSION   DATCGC010000303 DATCGC010000000
VERSION     DATCGC010000303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1284)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1284)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1284
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_303915"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..230
                     /locus_tag="VIJ87_02945"
     CDS             <1..230
                     /locus_tag="VIJ87_02945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443428.1"
                     /translation="IDAMEQGDQDGMQTFDGVLEKMIRDGILTPEGALPYATNANNLL
                     LKISDLAGAPAPPKATDKPKDEGSMLDMIER"
     gene            290..>1284
                     /locus_tag="VIJ87_02950"
     CDS             290..>1284
                     /locus_tag="VIJ87_02950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443429.1"
                     /translation="MFLNVRRFCFSLVILLGLFLSINSRVGNAQEDDIRIDVPADGRV
                     HVENRYGDVDAEVWDKPYVSVAASVSAPANLTRSPIVIDNKGKFLSVSTLRIPATSVA
                     AIDLKIKIPQTANLEVGTAKGKINLRGLSASALLKSVSGDIDATVNEPFDVNLTARAS
                     KGGISSGFTVKPGATDRLWQVRLGSGGERRTLDAQTETGHLTFSPAASEVTTKSVPEL
                     KGANNSGRAGTPANPNQPDEVAEGDVIRTDSQLVTLNMSVIDRGTNRGLKGLRQTDFH
                     LFEDGEEQPILTFESSSAPFDLVLLMDLSGSTKDVVKLIRAAALRFVEAARPTDR"
BASE COUNT          329 a          310 c          338 g          307 t
ORIGIN      
        1 tgatcgacgc aatggagcag ggcgatcagg acggaatgca aacgtttgat ggcgtgcttg
       61 aaaaaatgat tcgtgatggt atcctgactc ccgaaggtgc gctaccttat gccactaatg
      121 caaacaattt gcttttgaaa ataagtgatt tggctggggc tcctgcgcca ccaaaggcta
      181 ccgacaagcc gaaggacgaa ggctcaatgt tggatatgat cgaacgttag tcccgacacc
      241 catctccccg ggttaccgat cattactacg ctcacattag gtttgttata tgttcttgaa
      301 cgtccgtagg ttttgcttca gcctggtaat tctgctgggg ctttttctct ctattaattc
      361 gcgtgtaggc aatgctcaag aggatgacat tcggatagat gtcccagccg atgggcgtgt
      421 gcatgtggag aaccggtatg gcgacgttga tgctgaagtt tgggacaagc cgtacgtttc
      481 agtggcagcc tctgtatcag cgccagcgaa cttaactcgt tcaccgattg tgatcgacaa
      541 caagggaaaa tttctttcag tctcaactct gcgaattccg gcgacgtcag tagcagcaat
      601 cgacctcaag ataaaaattc cacaaacggc gaatcttgaa gtaggcaccg cgaaagggaa
      661 gataaacctc cggggattgt cggccagcgc actacttaag tcggtctcag gcgacataga
      721 tgcgacggtg aacgaaccgt tcgacgtgaa ccttaccgct cgtgcgagca agggtggcat
      781 aagctccggt ttcactgtga aacctggcgc aacagatcgt ctttggcagg ttcgactagg
      841 aagtgggggt gaacgtcgaa ccctcgacgc tcaaaccgaa accgggcacc taacattttc
      901 tccggcggca agcgaggtta cgaccaaatc ggtaccggaa ctgaagggag caaataattc
      961 ggggcgggct ggcactccgg caaatcccaa ccaacccgac gaagtcgctg agggtgatgt
     1021 tattcgcacg gactctcaac tagtcacact gaacatgagc gttattgatc gaggaacgaa
     1081 tcgtggtcta aaaggccttc gtcaaacaga ctttcatttg tttgaagatg gcgaagaaca
     1141 accaattcta accttcgagt catcgtctgc tccctttgac cttgtgctgt taatggattt
     1201 atctggatcg actaaggatg tcgtcaaact aataagagct gcagcccttc ggtttgtcga
     1261 agcggctcgt ccaactgatc ggat
//
LOCUS       DATCGC010000304         1035 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_237827, whole genome shotgun sequence.
ACCESSION   DATCGC010000304 DATCGC010000000
VERSION     DATCGC010000304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1035
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_237827"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(321..>1035)
                     /locus_tag="VIJ87_02955"
     CDS             complement(321..>1035)
                     /locus_tag="VIJ87_02955"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY5443430.1"
                     /translation="GNGYDTKHFTPPYNPWDQRLCIAPDADFFRSIRDGSVSVVTDHI
                     ETFTEDGLLLKSGAQLDADIIVTATGLQLKLISGMQLLVDGTPVNLSKTLVYKGMMFS
                     DVPNLAFAIGYTNASWTLKCDLTSEYVCRVLNHMDQHGYEVCTPRVNDPDIKEEPVLD
                     FNSGYVLRALPMLPSQGSKMPWRLHQNYMKDLRMLRYGRLDDSMEFKTVGHRQQIPDS
                     RRTDLPKLAGDRESHLSSD"
BASE COUNT          247 a          254 c          286 g          248 t
ORIGIN      
        1 tgtgctttcg ccattgtcat tgcgtgcggc aacaaaaatg acgctggcaa aacatgtcaa
       61 caggcacaca attccgagcg caaacacagt gcggtggatg tttgaggcac gattgatttt
      121 gatcatactc agaaaagaga actaatcggc gagagagttt tgtaaatatc gccgatgggc
      181 ggaagatgac aacgacggac gtgcaagtaa actggtgata aattaaccag cggccgcagg
      241 ggagcgtcgt ccgtagcgcg ctcattttca gcggtgagta tcggaaaagt caatatgcgg
      301 caaggacgat tacgtgtttg tcagtcggaa gatagatgcg attcacgatc gcccgctaat
      361 tttggaagat ctgtccgccg actgtcgggt atttgctgcc tgtgccccac agttttgaac
      421 tccatgctgt cgtccaggcg tccgtaacgc aacatccgga gatccttcat gtagttctgg
      481 tgcaaccgcc agggcatctt cgatccctga cttggcagca tcggcagtgc gcgcaaaacg
      541 tatcctgaat tgaaatcaag gactggttcc tctttgatgt cgggatcgtt cacacgcggc
      601 gtacaaactt catagccgtg ttggtccatg tgattcaaca cccgacacac gtactcggaa
      661 gttagatcgc acttcaaagt ccacgacgca tttgtgtagc cgatggcaaa ggcgagattg
      721 ggtacgtcgc tgaacatcat tcctttatag acgagcgtct tcgataggtt cacgggcgtt
      781 ccgtctacca ggagttgcat accactgatg agtttgagtt gaagcccagt cgccgtcacg
      841 atgatgtcag catcgagttg cgcgcccgac ttcagcaaga gaccgtcttc cgtgaatgtc
      901 tcgatgtgat cggtgaccac tgacacgctg ccgtcgcgta tcgagcggaa gaagtctgcg
      961 tcaggcgcaa tgcacaggcg ctgatcccag ggattgtaag gtggcgtgaa atgctttgtg
     1021 tcgtatccgt ttccg
//
LOCUS       DATCGC010000305         1177 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_37926, whole genome shotgun sequence.
ACCESSION   DATCGC010000305 DATCGC010000000
VERSION     DATCGC010000305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1177)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1177)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1177
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37926"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..754
                     /locus_tag="VIJ87_02960"
     CDS             <1..754
                     /locus_tag="VIJ87_02960"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LamG-like jellyroll fold domain-containing
                     protein"
                     /protein_id="HEY5443431.1"
                     /translation="WSGADMSVRRQGVQRDRAPRTGGGYKARMLGFAPLGYWRLDETS
                     GTTAFDSSGNGRNGTITGSNFLLNQPGAINNTDPGAKSVKLTGSATHILIPTGSWMNV
                     TNHASWVWWMKSGFNANNAGIFSRYQNGGGGVASWLHWFNTASGIDFRIMIGGTAKSV
                     SINWPQLGVWTMLSATFDGTTLRGYVNDNEVGSLAASGNIDTGTGDMSLGSYQAGTWS
                     IQNHFLDEVAFLGSTLKGTDIVDLYNAGVGIR"
     gene            768..>1177
                     /locus_tag="VIJ87_02965"
     CDS             768..>1177
                     /locus_tag="VIJ87_02965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443432.1"
                     /translation="MKKTVDEVLEHHGVKGQKWGVRKAATSGSSSGTASAKASSSESP
                     RAAAGAAKAKQVLVDHAYAKRSAQIAGLSVLGIAAAGLAPGLLPAAVVAAAGGTTVLS
                     AKVALAATVATRAAYVQNYISYAKRAKARVVSVA"
BASE COUNT          277 a          282 c          345 g          273 t
ORIGIN      
        1 ctggagcgga gctgacatga gtgtacgtcg gcagggagtt cagagagatc gggctcctcg
       61 taccggcgga ggctacaagg cgcgaatgct ggggtttgct cctctagggt actggcgtct
      121 tgatgaaacg tctggaacga cggcgttcga ctcatctgga aatggtcgaa acggaaccat
      181 cactgggtcc aactttcttc tgaatcaacc aggtgcaatc aacaacacag atccgggcgc
      241 caaatcagtg aagctaactg gttcagcaac gcatattctc atccctacgg gatcgtggat
      301 gaatgtgacg aaccatgcat cttgggtttg gtggatgaag tccggtttca acgcgaataa
      361 cgcgggcata ttctctcgct atcagaatgg cggaggaggt gttgcttcgt ggttgcattg
      421 gttcaatacg gcgagcggta ttgattttcg aatcatgatt ggtggaacgg caaagtctgt
      481 ttccatcaac tggcctcagc taggtgtatg gaccatgttg tctgctacct tcgatggcac
      541 aacgcttcgt ggctatgtca acgacaacga ggtcggtagt ctcgcggctt cgggcaacat
      601 cgacacagga accggcgaca tgagtcttgg ttcttatcag gccggaacat ggagcatcca
      661 gaaccacttc ctcgatgagg tggctttctt gggttcaaca ctcaagggca cggacatcgt
      721 cgatctctac aatgctggag tcggcattcg ctaggaaagg aggctccatg aagaagactg
      781 tagacgaagt gcttgaacat cacggcgtaa agggtcaaaa gtggggcgtc cggaaagccg
      841 caacgtctgg tagttcttct ggaactgcct cggcaaaggc tagctcttca gaaagtcctc
      901 gagcagctgc tggagcggct aaggcaaagc aggttctggt agatcatgcc tatgcgaaga
      961 gatcggctca aatcgcaggt ctctcagtat tagggatcgc tgccgctggt cttgcaccgg
     1021 gtctacttcc agcagcagta gtagccgcgg ccggaggaac tacggttctt tcggcaaagg
     1081 ttgctttggc agcaactgtc gccactcgag cagcatatgt tcagaactac attagctatg
     1141 caaagcgagc caaggctcgt gtagtttcgg tagctca
//
LOCUS       DATCGC010000306         1632 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_403716, whole genome shotgun sequence.
ACCESSION   DATCGC010000306 DATCGC010000000
VERSION     DATCGC010000306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1632
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_403716"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..682)
                     /locus_tag="VIJ87_02970"
     CDS             complement(<1..682)
                     /locus_tag="VIJ87_02970"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEY5443433.1"
                     /translation="MAVPPALQRTIERLSLITLTRWLIVAAAFHVTLALTFFLIGRFH
                     LLPGLFDANGIGIPFAIDGTTYLYYTKELADGLRTGGPSSWFSLAAPFHCRLYSLTFV
                     FPGCLLGYNTLSAEPLNLIYYLGTLSFLYLLAKELFNRRAGLLAAIIVGLWPSFLLHS
                     TQLIRDSLFCFLMLAFVYLLTILLRRPLSLRWTVVAVILGFVLIVVLWLIRGNWWNLI
                     FAQLVITLV"
     gene            complement(713..1429)
                     /locus_tag="VIJ87_02975"
     CDS             complement(713..1429)
                     /locus_tag="VIJ87_02975"
                     /inference="COORDINATES: protein motif:HMM:NF024183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-TFIIB domain-containing protein"
                     /protein_id="HEY5443434.1"
                     /translation="MEAGTINCPMCGAATSTDAPQCQYCEAQLATVACPSCFAMMFLG
                     SKHCPRCGAAYAREHEVASADRKCPRCRIEMRIVSIGNSKVLECAKCLGLWLDTQSFE
                     KLCADKEQQSAVLGNVSLADRSIQQTKVNYVPCPECSQLMNRANFARCSGVIIDLCKQ
                     HGIWFDRNELSRIVEFIRSGGLEKSRAKEKNALEEERRKLQQEQLALDMQHSGITDLG
                     ERDRVSGIASASGLLKFLLG"
BASE COUNT          445 a          388 c          433 g          366 t
ORIGIN      
        1 aaaccaaagt gatcactagc tgtgcaaaga tcaggttcca ccagtttcca cgaattagcc
       61 acaagaccac gataagtacg aagcccagaa ttacagcgac aacagtccag cgtagggaca
      121 gtggtctgcg taacaagatg gtcagcagat acacgaaggc gagcatcaag aaacagaaaa
      181 gagagtctct gatcagctgc gtcgaatgta gtaggaacga aggccagagg ccaacaatga
      241 ttgcggcgag caaacccgcg cggcggttga atagctcctt cgccagcagg taaagaaaac
      301 taagtgtgcc aaggtagtag attagattta gaggttcggc cgagagggtg ttgtagccaa
      361 gtagacagcc tggaaaaaca aaagtcagtg agtaaagtct gcagtggaaa ggcgccgcca
      421 gcgaaaacca ggaagaaggt ccgccagtcc ttaagccgtc tgcgagctct ttggtgtaat
      481 aaagataagt cgtgccatca attgcaaatg gaatcccgat tccgttggcg tcaaaaaggc
      541 caggcaatag gtggaagcgg ccgattagga agaaagtgag agcgagtgtg acgtgaaagg
      601 ctgccgcaac gattaaccaa cgggttagtg tgatcagtga gagtcgctcg attgtacgtt
      661 gcaatgccgg ggggacagcc actttttgat ttagctccta cctatcggca attcaaccca
      721 acagaaattt caacaagcca ctggcagaag cgataccgga aacacgatct cgttcaccga
      781 ggtccgttat tccagagtgt tgcatgtcca gtgcgagttg ttcctgctga agctttcggc
      841 gttcttcttc gagcgcgttc ttctcttttg ctcgcgactt ctcgagtccg cccgaacgga
      901 taaattcgac gatgcgactc agttcgttgc gatcaaacca gattccatgt tgtttacaga
      961 gatcgatgat aacaccggaa cagcgcgcga agtttgcgcg attcatcagc tgcgagcatt
     1021 cggggcatgg cacatagttg accttggttt gttgtatcga acgatccgcc agggatacgt
     1081 taccgagtac cgcagactgc tgttctttgt cagcacacag tttttcaaac gattgagtat
     1141 ccaaccagag gccaagacat ttcgcgcact cgagcacttt tgaattaccg atagaaacta
     1201 tccgcatctc gattcgacag cgtggacatt tccggtccgc acttgcaact tcgtgttctc
     1261 gtgcatacgc cgctccacag cgcggacaat gtttgcttcc cagaaacatc attgcaaaac
     1321 aggacgggca ggcaacagtc gccagttgcg cttcgcaata ctgacattga ggcgcgtcgg
     1381 ttgaagtggc ggcgccacac attgggcagt tgatcgttcc ggcttccatg tcgagctgga
     1441 ttctagcaga ggtttatcta agcgcgatct gtggatagtt tactggactc cattaatgtc
     1501 gtatgcgatg ctcaagtaga ccaaccgcat tttgaataac ttcgaaaaaa atgagtagcg
     1561 tgctcgatgc cacagtcgac cgagttgagc ctgagtcgga aacggttccg ttaaagggta
     1621 aacaaggact ta
//
LOCUS       DATCGC010000307         1130 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_337162, whole genome shotgun sequence.
ACCESSION   DATCGC010000307 DATCGC010000000
VERSION     DATCGC010000307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1130)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1130)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1130
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_337162"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(66..192)
                     /locus_tag="VIJ87_02980"
                     /pseudo
     CDS             complement(66..192)
                     /locus_tag="VIJ87_02980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011000070.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
     gene            complement(170..1099)
                     /locus_tag="VIJ87_02985"
     CDS             complement(170..1099)
                     /locus_tag="VIJ87_02985"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY5443435.1"
                     /translation="MQDSERLIGGTKGSHIVVRPFAGSPSLAIYVEAEADRRPFFVIP
                     WNNNYLIGTTDNRFEGDLDQVRSELWEVDYLLKETNRVFPKAHLQPADVCYTYSGVRP
                     LPFTAGSDERRITRQHFIREHNKDKKLLSIVGGKLTTYRSLAEECVDMVFRKLDKRSP
                     RCLTAEAGLPGAAELVSLNEVLTPPPFSYAITKRLSHIYGAKVGELVRRCNAQPELAR
                     VFNKAGDAIAAEIVFAFEVEGAVTLADCLLRRTMLGLNPDLAIGDDVSAAEIAKQYLG
                     WRDKRAKDEVAEYRAEIERMRVGRFSGPSNQNR"
BASE COUNT          271 a          292 c          285 g          282 t
ORIGIN      
        1 catccggacg aggtcgaagc tgcccgggcc ttgaagaggc ttcgctgagg tttttcggaa
       61 tacaactagt gttgcgtttc tgaaattctt tgacaaagtc tctctacctt tttgaggatt
      121 gagtcagccg tagcagtcca aatgaagggt attgtactgc tgaacgtagc tatcgatttt
      181 ggttactagg tccactgaat cgaccaacgc gcattcgttc aatttcagct cgatactctg
      241 ccacctcatc tttcgctcgt ttgtctctcc atcccaggta ttgttttgca atctcggcag
      301 ccgatacatc gtctccaatc gcgagatcgg gattcaatcc aagcattgtg cgacgcagaa
      361 gacagtcggc aagcgtcacc gctccttcta cctcaaatgc aaagacgatc tccgcagcga
      421 tcgcatcacc agctttgttg aatacacgag ccaactctgg ttgagcgtta cagcgacgaa
      481 ccaattcacc gactttcgca ccgtaaatgt gcgacaagcg tttagtaatc gcgtaagaaa
      541 atggcggcgg cgttagtact tcgttgagac tcacgagttc ggcggcacca ggtagccccg
      601 cctcagccgt taagcaacga ggagatcgct tatcaagctt acgaaagacc atgtcaacgc
      661 actcctctgc gaggcttcga tacgtcgtca gctttccgcc aacaattgaa agtagcttct
      721 tatctttgtt gtgctctcgg atgaaatgtt gacgggtaat gcggcgctcg tcggagccag
      781 cggtgaacgg caaaggtcga acacctgagt aggtgtaaca aacatcagcg ggttgtaagt
      841 gggctttcgg aaacactcga ttagtttctt tcaacaggta gtcgacttcc caaagttcgc
      901 tgcggacctg atcaaggtca ccttcaaagc gattgtcggt ggttccaatc aggtagttgt
      961 tgttccacgg aatgacgaag aagggacgac gatcagcttc ggcttcgacg tagatggcca
     1021 gcgacggaga tcccgcgaac ggcctaacta cgatatgact acctttggtt ccgccaatga
     1081 gtcgttctga atcctgcacc agagtgtcga cccatgggcc agaagcattg
//
LOCUS       DATCGC010000308         1276 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_370420, whole genome shotgun sequence.
ACCESSION   DATCGC010000308 DATCGC010000000
VERSION     DATCGC010000308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1276)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1276)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1276
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_370420"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(367..1089)
                     /locus_tag="VIJ87_02990"
     CDS             complement(367..1089)
                     /locus_tag="VIJ87_02990"
                     /inference="COORDINATES: protein motif:HMM:NF018484.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chlorite dismutase family protein"
                     /protein_id="HEY5443436.1"
                     /translation="MVTPEQTPASQSPKRQYVNFAFYKIDPAWRRLPESERTKGKQEF
                     IRAIEDYNGKVLVVAYSCIGIRGDCDIMLWRIGYELELFQDMTTKILASGLGQYLSTP
                     YSYLSITKRSVYVDHHTHENQESKRLTVVPGKAKYIFVYPFLKTREWFLLTKAARQGM
                     MDEHIEVGHRFPSVKLNTSYSFGLDDQEWVVAFESDKPEDFLDLVMALRETEGSRYTL
                     RDTPIFTCIRKSLKETLDTLGG"
BASE COUNT          298 a          308 c          341 g          329 t
ORIGIN      
        1 atgttctctc gtcgatgtgg ttcatttggt ttatttcgtt tatttggttc gaagcacaaa
       61 ataactaaac agacaaaaca aaccaaataa accagatgaa ccaaacccac cgtggcttca
      121 caaccaatac aggtaccata cgagagattt ggctgtcaaa acgagggcgc acctgcgctg
      181 ctctgtgtca agatccaagg tttaaatttg gaaggaaggt cctgcgtctt gcttgcagag
      241 tgaggagtct gtctggttgg tctggtttac tggtttatct ggtttgttta gtttgtttag
      301 ttgattaggt ttggtccgaa gcacgaaaca accaaacaaa ccaaagcaac caaacaaacc
      361 agattgtcag ccgccgagcg tgtcgagcgt ttccttgagg ctcttgcgaa tgcaggtgaa
      421 gatcggcgta tcgcgcaacg tatagcgtga accctcggtt tcgcgaagag ccatcacgag
      481 atccaggaag tcttccggct tatcgctctc aaatgccacg acccattcct gatcatccaa
      541 cccgaaggaa taactcgtgt tcagctttac cgaagggaaa cgatggccga cttcgatatg
      601 ctcgtccatc atgccttgcc gcgctgcctt cgtgagcagg aaccattcgc gcgtcttcag
      661 gaacgggtag acgaaaatgt acttggcttt tcccggaacg acggtcagac gtttgctctc
      721 ttgattttcg tgggtgtgat gatccacgta gactgagcgc ttggtgattg agagatacga
      781 gtagggggtg ctcaggtatt gtcccaggcc cgaggccagg atcttcgtgg tcatgtcctg
      841 gaagagttcc agttcgtagc cgatccgcca cagcatgata tcgcagtcgc cccgaatccc
      901 gatgcaggag taggccacga cgagcacctt gccgttgtag tcctcgatcg cgcggataaa
      961 ctcctgcttg cctttggtcc gttcactctc cgggaggcgc cgccaggccg gatcgatttt
     1021 ataaaaagcg aagttcacat attgacgttt aggtgattgg gaagctgggg tctgttcagg
     1081 tgtaaccatc gaaactcctc cgtagtactt cttgagaagg gcggcaactg tgattattcg
     1141 tgcattcctg ccggctcagt agcaggttgg ttttttatca tcctgtcttt gttattgtca
     1201 acctcggaga tatctgagca ggatggtcaa aagggctgtc cagcaaggcc gcggcgtctg
     1261 aagaaggttg aggccg
//
LOCUS       DATCGC010000309         1113 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_204078, whole genome shotgun sequence.
ACCESSION   DATCGC010000309 DATCGC010000000
VERSION     DATCGC010000309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1113)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1113)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1113
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_204078"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..349)
                     /locus_tag="VIJ87_02995"
     CDS             complement(<1..349)
                     /locus_tag="VIJ87_02995"
                     /inference="COORDINATES: protein motif:HMM:NF024751.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEY5443437.1"
                     /translation="MYQRPYDPKHPVVCMDEASKQLLADVFEPLPAKPGHMAKEDSNY
                     ERHGTCNLFVAFEPMCGWRDVTVTDRRTKCDWADYVKQIVDEMYSDAERITLVCDQLN
                     THTLASLYEAFEPQ"
     gene            complement(373..870)
                     /locus_tag="VIJ87_03000"
     CDS             complement(373..870)
                     /locus_tag="VIJ87_03000"
                     /inference="COORDINATES: protein motif:HMM:NF024954.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY5443438.1"
                     /translation="MHPHKYIVQLSDEERNGLQRIVSTGTSPARMIRRAQILLKSDAG
                     WTDEAIVEALGVSEQTVHTVRKQCVQDGVKKTLERKSGRPAGSQVKALDGVAEAHLIA
                     LACSEPPEGHQCWTLRLLAGRMVALEYVEAVSHETVRNVLKKTNSSLGASTSGASRPS
                     TTRRS"
BASE COUNT          228 a          317 c          290 g          278 t
ORIGIN      
        1 cttggggttc aaacgcttca tacagtgatg caagggtgtg cgtgttcaat tggtcacata
       61 ccagggtgat ccgttcagca tctgaataca tttcatccac gatctgcttg acatagtctg
      121 cccaatcaca tttggtgcgt cgatctgtta ccgtcacatc ccgccatccg cacatcggct
      181 caaatgccac aaacaaattg caggtgccat gccgctcgta gttgctgtct tctttggcca
      241 tgtgcccggg cttggccggc aacggctcaa acacatccgc aagcaactgc ttactggctt
      301 catccatgca cacgactgga tgcttgggat cgtaaggacg ttgatacaca tccagcacaa
      361 cctccatctg agctacgaac gccgcgttgt gcttgggcgg gatgcaccag atgtgcttgc
      421 gccaaggctt gagttcgttt ttttcaacac atttctcacg gtctcgtgcg acacagcttc
      481 aacatactcc aatgccacca tccgacctgc gagcagtcgc agcgtccaac actggtgccc
      541 ctcaggcggc tcactgcatg ccagtgcgat cagatgcgct tcagccacgc catccaatgc
      601 tttgacttgg ctgccggcag gtcgtcctga cttgcgttcg agcgtcttct tgacaccgtc
      661 ttgaacacac tgcttgcgta cagtatgaac ggtctgctca ctcacgccta aggcttcaac
      721 gatggcctca tccgtccagc ctgcatctga tttcaataga atctgtgctc gccggatcat
      781 tcgtgccggc gacgtgcctg tgctgacgat tcgctgcaag ccgttgcgtt cttcatcgct
      841 caactgcaca atgtatttgt gagggtgcat gccatctagc ttagctctag ctacgctttt
      901 tgctttgaca aactactagt gggtcatctg gtcatggtgt agtctatgag catgccacga
      961 cagagtcgag agcccatgcg tgaactgaca cgtgaagagc aagcggtgtt gaagcgcatc
     1021 gcgcgaagtc gaacggaagc agcagaagtc gttgggcgcg cgcgaagtct gctggttgtt
     1081 gctgatgggg caggatttgc tgccggtgcg cgg
//
LOCUS       DATCGC010000310         1163 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_304016, whole genome shotgun sequence.
ACCESSION   DATCGC010000310 DATCGC010000000
VERSION     DATCGC010000310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1163)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1163)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1163
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304016"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(181..609)
                     /locus_tag="VIJ87_03005"
     CDS             complement(181..609)
                     /locus_tag="VIJ87_03005"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: protein motif:HMM:NF004064.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004126 - cytidine deaminase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0009972 - cytidine deamination [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HEY5443439.1"
                     /translation="MSEQDFQPLIEEALKARLQSVAPFSGFLVGAAVKTDSGKVFTGC
                     NVESASYGLTVCAERVAIWKALSEGERHFTELAVVADTETLTPPCGTCRQIIWEFARN
                     ATVVFANLNGQSETFHMADLLPRAFDARFLAGAKKTSDKS"
     gene            complement(606..>1163)
                     /gene="udk"
                     /locus_tag="VIJ87_03010"
     CDS             complement(606..>1163)
                     /gene="udk"
                     /locus_tag="VIJ87_03010"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: protein motif:HMM:NF004018.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004849 - uridine kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HEY5443440.1"
                     /translation="SEVVFIQQDSYYRNLKDLPLDYRQVANFDHPDALDNDLLVNHVR
                     RLRAGEPIELPLYDFKTHTRLVETRAVEPKPIVIVEGILIFAEPRLLEQMDIKVFVDT
                     PDDIRFIRRLRRDIAERGRTAESVIEQYIATVRPMHMQFVEPSKRHADVIIPEGGHNL
                     VSIDLLSGKIRERLASSMHSVGGQL"
BASE COUNT          289 a          296 c          281 g          297 t
ORIGIN      
        1 catcggccgg cgatcctcga gtgatacagt tgggcgtgaa gtttgaattc tgaatctgga
       61 actggttgaa gtcagtacca caacgcggta gcgtgtggct tagagttgcg atagacgagt
      121 tagatattgg tttgagccac acgctaccgc gttgtggtac tgacttcatg acacgacaag
      181 ttagctttta tcagaagttt ttttcgcgcc ggccaagaac cgagcgtcaa aagctcgcgg
      241 cagcaaatca gccatatgaa acgtttcgct ctgtccgtta agattcgcaa aaactaccgt
      301 tgcgttacgc gcgaactccc aaattatctg ccggcaggtt ccacatggtg gcgttagcgt
      361 ttctgtgtct gcgacaaccg cgagttcagt gaaatgccgt tcaccttccg ataacgcttt
      421 ccaaatcgcg actcgctcgg cacacacagt tagcccgtaa ctagcactct ccacattgca
      481 gcccgtgaat actttcccac tatctgtctt aactgctgca ccaaccagaa aaccagaaaa
      541 cggtgcgacc gattgaagtc ttgcttttaa agcctcttca attaatggct gaaaatcttg
      601 ttcgctcaaa gttgacctcc aactgaatgc atactactgg ccagccgctc gcgaattttt
      661 ccgctaagta aatcaatgct caccagatta tgaccgcctt caggaatgat aacgtcggca
      721 tgtcgtttcg acggctcgac aaactgcatg tgcatcggcc tgaccgtggc tatgtactgt
      781 tcaatcactg actcggccgt gcgacctcgt tctgcaatat cgcggcgcaa ccgtcgaata
      841 aaacgaatgt catccggtgt atctacaaaa actttgatgt ccatttgttc gagcaagcgc
      901 ggctcggcaa atattagaat cccttcgacg attactatcg gtttcggttc gaccgcgcgc
      961 gtttctacca accgagtatg cgttttgaaa tcgtagagag gcaactcgat aggctcgccg
     1021 gcgcgaaggc gacgcacatg gttcacgagc aaatcgttat cgagggcgtc agggtgatcg
     1081 aaattagcga cttggcgata gtcgagggga aggtctttta gattgcggta atatgagtct
     1141 tgctggataa aaactacttc act
//
LOCUS       DATCGC010000311         2524 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_437226, whole genome shotgun sequence.
ACCESSION   DATCGC010000311 DATCGC010000000
VERSION     DATCGC010000311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2524
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_437226"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..786)
                     /locus_tag="VIJ87_03015"
     CDS             complement(<1..786)
                     /locus_tag="VIJ87_03015"
                     /inference="COORDINATES: protein motif:HMM:NF024772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEY5443441.1"
                     /translation="MFRSPVVRWVSGLVLVVAVLALARFKPWRLVTQRNAQQQTQARA
                     QLKVGFLPVTCHLTCPVTDYATRTSAMTRFESQRFTDFPTVVESIKSGRLDATFMIAP
                     LAMKLREQGVPVKICYLGHRDGSTVIIRKDLPGQSLRDLRGKTFAIPSKYSNQYLVIR
                     KLMDDQGVKPEEIKFVELPPPDMPGALASKAIDAYFVGEPHAAKAELDGSGRVLYHAK
                     DIWPHFISCVLVVTEKLINEHPEVVRDLVRGIAESGEWAETHRL"
     gene            complement(1077..1826)
                     /locus_tag="VIJ87_03020"
     CDS             complement(1077..1826)
                     /locus_tag="VIJ87_03020"
                     /EC_number="7.6.2.14"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY5443442.1"
                     /translation="MSDKPLRVANVSLSFGTVEVFQNLSVEIEHGEFVAVVGPSGCGK
                     TTLLNLFSQFIKPSSGKVVCAARARMVYQHDSLFPWQTVSENIALGLRHLNDNAERTR
                     QLGDMLRLINLEGFENHYPHQLSGGMRQRVELARALIGDSDILLLDEPFSSLDYLTRI
                     RLRNELARMLDKLPRTVVLVTHDIEEAAQLADRIIVLSDRPARICSELRVDLARPREL
                     THPAVVTTVHKILAELGLEQETRQAMMSPTS"
     gene            complement(1816..>2524)
                     /locus_tag="VIJ87_03025"
     CDS             complement(1816..>2524)
                     /locus_tag="VIJ87_03025"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5443443.1"
                     /translation="LVWTVISLSGVFPTSVFPSPMDVARGFLEELRTGRLIDDIVASL
                     FRVTTGFGLAALTGIPVGLWLGNHARARVALLPLINFFRSLSPLAWIPFAILWFGIGD
                     LPTVFLIFMASFFPLVLATVAAVANIPSVYFRVAGDYRFSGTEVLTKVTLPAVAPQVI
                     TSLRVTAGLAWLVVVAAEMIAGRAGLGFAIWDARNGLRMDLLVCGMIVIGVIGIVLDR
                     ILLQLTKIPSVRWGYER"
BASE COUNT          653 a          717 c          616 g          538 t
ORIGIN      
        1 caagcgatgc gtctctgccc attcaccact ctccgcaatt cctcgaacca aatcacgaac
       61 aacttcaggg tgctcattga tcaacttctc ggtgacaacc agaacacatg agatgaaatg
      121 cggccaaata tctttggcgt ggtacaagac acgcccgctg ccatctaact cagccttcgc
      181 cgcatgtggt tcaccaacaa agtacgcatc gattgctttt gaagcgagag ccccgggcat
      241 gtcgggaggt ggcagttcga cgaactttat ctcttccggc ttcaccccct gatcgtccat
      301 aagtttgcga attaccaaat actgattgct gtacttgctt ggaatcgcaa acgtctttcc
      361 gcgcaagtcg cgaagactct ggcccggtag gtctttacga ataatcactg tcgaaccgtc
      421 gcgatggccg agatagcaaa tctttacggg cacaccttgc tcgcgcagtt tcatcgcgag
      481 cggcgcgatc atgaacgtcg cgtccagtcg tccactcttg attgattcaa ctacggttgg
      541 aaagtcggtg aagcgctgcg attcaaaacg cgtcatggcg ctggttcgcg ttgcgtagtc
      601 ggtaactggg cacgtgagat ggcaagtgac aggcaggaag ccaaccttca actgggcgcg
      661 tgcttgtgtt tgctgctggg cgttgcgctg tgtcactaaa cgccagggct taaatcgcgc
      721 gagcgccaac accgcaacca ctaaaaccag tcctgacacc caacgcacaa ccggtgaacg
      781 aaacatattg acctccgcca aatctagctt tttgcctaca agttttcagg ttaggacggt
      841 ggaccctcga caagacttta gaatcctctt acaactctca ttctccccaa gcttcagctt
      901 ggggtctacg atagggcacg attttgaaga accgtttcaa cggtttacga gttttgagcc
      961 acacccgagt cttaatggcg ttcggatcca ttcgcacagt gggtaaaccg ttgaaacggt
     1021 tcccgcagta ctgagcccac cctaacccca agctgaagct tggggagaat gagagctcaa
     1081 cttgttgggg acatcatcgc ctgccttgtc tcttgttcca atcccaactc agccagaatc
     1141 ttgtgcactg tcgtaaccac ggcaggatgc gttagttcac gcggtcttgc gaggtcgacc
     1201 ctcaactcag aacaaattcg cgcgggccta tcggacaaca caatgatgcg atcggcaagc
     1261 tgcgccgcct cctcgatatc atgtgtaacc agaacgacag ttctcggtag cttatccaac
     1321 atgcgcgcca actcgttgcg caatcttatt cgcgttaagt agtccagcga agagaaaggc
     1381 tcatcaagaa gaagaatgtc tgaatcacca atcagtgctc gtgctaattc gacgcgttgg
     1441 cgcatgccgc cggacaactg atgtggatag tggttctcaa agccttccag gtttatcaac
     1501 cgcagcatgt cgccaagttg tcgcgttcgt tctgcgttgt cgttgaggtg tctcaaacca
     1561 agggcaatgt tttcactaac cgtttgccat gggaaaagac tgtcgtgctg ataaaccatc
     1621 cgcgcacgag cagcgcacac aacctttcct gaagatggtt taataaactg cgaaaacaaa
     1681 ttcagcagcg tcgtctttcc acaaccggaa ggaccgacaa cagcaacaaa ttcaccgtgc
     1741 tcaatttcaa ccgaaaggtt ttggaaaact tcgactgtcc caaagctgag cgaaacgttc
     1801 gcgacgcgca ggggtttatc gctcatagcc ccacctcacg cttggtatct tcgtcagctg
     1861 aagaagaatt cgatcaagca cgatcccgat aacgccaatc acaatcatcc cgcaaaccaa
     1921 cagatccatt cttagtccat tgcgagcgtc ccaaatcgca aaccccaagc cagctcgacc
     1981 ggcaatcatt tccgccgcaa ccacgaccag ccatgcgagt ccggccgtca ctcttaatga
     2041 agtaataacc tgtggagcta cggctggcag cgtaactttc gtcaacactt cggtaccact
     2101 gaagcgatag tcgccggcta cgcgaaaata aaccgaggga atatttgcaa cggccgcgac
     2161 cgtcgccaac acaaggggaa agaacgacgc catgaagatc agaaagactg tgggtagatc
     2221 tccaatgccg aaccaaagaa tcgcgaaagg aatccacgcg agcggagaga gactcctgaa
     2281 gaagtttatc aacggcagca aagccactct ggctcgcgca tgattcccta gccagagccc
     2341 gaccggaatg ccggttaggg cggccaaccc gaatcccgtg gtgacgcgga acaatgaggc
     2401 gacgatgtcg tcaatcaacc gcccggtgcg caactcttca aggaatcccc gcgcgacatc
     2461 catcggtgac gggaagacag atgtggggaa aactcctgat agcgagatca cagtccagac
     2521 gagc
//
LOCUS       DATCGC010000312         2030 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_137510, whole genome shotgun sequence.
ACCESSION   DATCGC010000312 DATCGC010000000
VERSION     DATCGC010000312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2030
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137510"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..374)
                     /locus_tag="VIJ87_03030"
     CDS             complement(<1..374)
                     /locus_tag="VIJ87_03030"
                     /inference="COORDINATES: protein motif:HMM:NF024969.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:1901135 - carbohydrate derivative metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HEY5443444.1"
                     /translation="MSYNVDKNPPKLETSTSTRLLANSLQEHLETFQALIGTTLIDIE
                     RSGQLICDTLAGGHKLLVCGNGGSAADAQHLAAELVGRYEKTRRSLPAVALTTDTSAL
                     TAISNDFGYEEVFARQVAGLAQA"
     gene            636..>2030
                     /locus_tag="VIJ87_03035"
     CDS             636..>2030
                     /locus_tag="VIJ87_03035"
                     /inference="COORDINATES: protein motif:HMM:NF017039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443445.1"
                     /translation="MNLSNPTPMLRQYQELKQQHPGTLLFFRLGDFYELFFDDAVVGS
                     RELQITLTARHKESGNPIPMCGVPHHSAANYIARLVRKGYRVAICEQTEEAGKTKKLV
                     RREVVRIVTPGTPIDPQLLEARESVFLAAICSAGETVGAAFLDISTGEFRVTQETGKD
                     SWARIRSDLESFAPRELLFPASLAPLIKSGLSGKVQTSPLPLREESSEVNKFESGPIS
                     ANEYGIASTLTPVEDWQWQKEDCQNLLLEHFKVKTLEGYGLKKKDEAIRAAGACLRYA
                     QETQRASAAHITDLAYFEPQDHLVLDSVTVRNLELVESLAGGSGRSLLQVIDQTVTGM
                     GGRLLRSWLLRPCIKRGEVEARLAAVEDLVSSQRVRDKLRTLLKEVSDLERVLGRISL
                     GSATPRDLCAMLKSLNQVPEIRAVLAGLQSSLLQVLAENTDELPDIRSLIERAISNDP
                     PIKLSDGGAIRDGYS"
BASE COUNT          484 a          535 c          535 g          476 t
ORIGIN      
        1 gcctgggcca aaccagcaac ctgacgcgcg aacacctctt cgtagccaaa gtcgttacta
       61 atcgccgtca gggcggaagt gtccgttgtc aaagcaactg ccggaagcga tcgccgggtt
      121 ttctcatagc gcccaaccaa ctccgctgca aggtgttggg catcagctgc acttccgccg
      181 tttccgcaaa cgaggagttt gtggccgccc gccagtgtgt cgcagatcag ttggccggat
      241 cgctcaatat cgatcagggt ggtcccaatt aaggcttgaa aagtttccag atgctcttgg
      301 agggagttcg ccagcaggcg ggttgaggtc gaagtctcta atttcggcgg attcttgtcc
      361 acgttgtagc tcactgcgcc aaagcaaaaa ggcgccacga atcatcattg gggtcagcgc
      421 cagccctttg ccgctctcag ataagttagg ggtcgaaatt agcataaatc tctccgagtt
      481 aataccgtta gaaactacta gttaaccttc gatactgaat tactattgtc ataaggaacc
      541 tctcgatcag ttttctgctc aacttggaaa ggtccctgga cgcatgctcg acaaacgaaa
      601 gtttatcgga cattattccg agcacttact cacatatgaa tctttcaaat ccaacgccga
      661 tgctgcggca gtatcaggaa ctgaagcagc aacacccggg tacgttattg ttctttcgcc
      721 tgggtgattt ctacgaactc ttctttgacg atgccgttgt cggatctcgt gaacttcaaa
      781 tcaccctgac tgctcgccac aaggaatccg gtaatccgat tccgatgtgt ggcgttccgc
      841 accattcagc cgccaactac atagcgcgcc ttgttcgcaa gggttaccga gtcgccattt
      901 gcgaacaaac cgaagaagcc ggaaagacta aaaaactggt tcgacgcgaa gtagttcgta
      961 tcgtcacgcc cggaacacca atcgatccgc agttgcttga agctcgagag tcagtgtttc
     1021 tcgcggcaat atgtagcgct ggggaaacag ttggcgccgc tttcctggac atctcaaccg
     1081 gggaattccg cgtcacccag gagactggca aagattcatg ggctcgtatt cgttccgatc
     1141 ttgaatcgtt tgcgccccgt gagttgcttt tccctgcttc gcttgctccg ttaatcaaaa
     1201 gcggtctttc cgggaaagtt caaacatcgc cacttcccct gcgggaagag tcttcagaag
     1261 ttaataagtt cgaatcgggc ccgatttccg caaacgagta tggaatcgcc tctacattga
     1321 ccccggtcga ggattggcag tggcaaaagg aagactgcca aaacctcctg cttgagcatt
     1381 tcaaggtcaa aacacttgaa ggctacgggc tgaagaaaaa agacgaggcc attcgcgccg
     1441 ctggagcttg tcttcggtac gcacaagaaa cacagcgcgc ctcagccgca cacatcaccg
     1501 atctcgcata cttcgaacct caggatcacc tcgtgctcga cagtgtgacc gttcgaaatc
     1561 tggagttggt agagtcgctg gcgggtggta gtggacgatc gcttctgcaa gtgatcgatc
     1621 aaacagtgac cgggatgggt ggccgactac tacgatcgtg gttgttgcga ccgtgtatta
     1681 aacgaggtga agttgaggca aggctagcgg ccgtcgagga tctggtgtcg tctcaaagag
     1741 tccgcgacaa actgcgaact ctattgaagg aagtgtccga tctcgagcgt gtacttggtc
     1801 gaatcagtct tggttcagca acgccacgcg atctgtgtgc gatgctcaaa tcgctgaacc
     1861 aggttcccga gatacgagca gtgttagccg gtttgcagtc gtcgctactt caggtgctgg
     1921 ccgagaacac tgacgaactt ccggatatcc gttcactgat tgaacgagcg attagcaatg
     1981 atcccccgat caagttgagc gacgggggag cgattcgcga tggctattca
//
LOCUS       DATCGC010000313         1475 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_470326, whole genome shotgun sequence.
ACCESSION   DATCGC010000313 DATCGC010000000
VERSION     DATCGC010000313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1475)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1475)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1475
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_470326"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..369)
                     /locus_tag="VIJ87_03040"
     CDS             complement(<1..369)
                     /locus_tag="VIJ87_03040"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family A protein"
                     /protein_id="HEY5443446.1"
                     /translation="MQQAPLFSVVIPTRNRAHLLRNALQSVLWQSFDDYELIVSDNCS
                     ADNTADVVREIGGDRVRVVHPDRMLSMPDHWEFALNHARGRFVTYLCDDDAWAPEALA
                     RVSQVLDSSDSKLVVLSAGHY"
     gene            complement(431..1189)
                     /locus_tag="VIJ87_03045"
     CDS             complement(431..1189)
                     /locus_tag="VIJ87_03045"
                     /inference="COORDINATES: protein motif:HMM:NF016850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CmcI family methyltransferase"
                     /protein_id="HEY5443447.1"
                     /translation="MTIDTEQRTMTEESGTESRSLDLYSKEAFEIISNLWVKVGWNEK
                     YSYTFSWLGRPIVQLPEDMIRIQEVIYRIKPDVIIETGVAHGGSLIYYATLCKAFEKG
                     RVVGIDIEIRPHNRNAIEGHELSSYITLVEGSSTAPEVLDHVRSLIKPGESVLVILDS
                     NHTRQHVLDEMRSYCDLVTKGSYLVATDGIMKEFNDVPRGNPEWIWDNPNKAAQEFAA
                     ETPQFLLEQPPWPFNESKLTENVTHWPGAWLRRL"
     gene            complement(1192..>1475)
                     /locus_tag="VIJ87_03050"
     CDS             complement(1192..>1475)
                     /locus_tag="VIJ87_03050"
                     /inference="COORDINATES: protein motif:HMM:NF020073.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443448.1"
                     /translation="TQREKIALWGAGAKGVTFANLIEPRPELIDCIVDLNPLKQGCFV
                     PGSGHPIVAPESLGKRGVTTAFLMNQNYREENQALLEKLNLKVRLIDHL"
BASE COUNT          341 a          387 c          368 g          379 t
ORIGIN      
        1 atagtgacca gcagatagga ccactagttt agagtctgac gaatcaagga cttggctgac
       61 acgtgccaat gcctcaggtg cccatgcgtc gtcgtcgcaa aggtaggtga caaaccgccc
      121 gcgagcatga ttgagagcga actcccaatg gtccggcatg gacagcatgc ggtctgggtg
      181 gaccacgcgc acacgatcac ctccgatttc cctgaccacg tcagcggtgt tgtctgccga
      241 acaattgtcg ctgacgatca gttcatagtc gtcgaagctt tgccacagga cactctgcag
      301 ggcattgcgg agaagatggg cacgattgcg cgttggaatt acgacagaaa aaagtggtgc
      361 ttgctgcatt ttggaatctt aaccttgtag ataatctctt aggctcaatg ttgcttgctc
      421 ggcctagatc ttacagtcgt ctcaaccagg caccaggcca gtgcgtaacg ttctctgtaa
      481 gcttactctc gttgaagggc caaggcggtt gttccagcaa aaattgcggc gtctctgcag
      541 caaactcctg ggctgctttg tttgggttat cccatatcca ttccggattc ccgcgaggca
      601 cgtcgttgaa ctccttcata attccgtcag tcgccacgag gtacgacccc tttgtaacca
      661 ggtcgcagta cgaacgcatt tcatcaagga catgttggcg cgtatggttc gaatcgagga
      721 ttaccagcac gctctcgccg ggtttgatta aggatcgcac gtggtctaat acttctggag
      781 cggtcgaact gccttcgact agagtgatat aagacgaaag ttcatgaccc tcgatcgcgt
      841 ttcgattgtg cggccggatc tcaatatcga taccgactac acgacctttt tcaaacgctt
      901 tacagagcgt cgcatagtag atgagcgagc cgccatgggc cacaccggtt tcaattatga
      961 cgtccggttt aatgcggtat atgacttcct gaatccggat catgtcttcg ggaagctgca
     1021 cgataggccg gcccaaccac gaaaacgtat aagaatactt ttcattccag cccaccttta
     1081 cccagaggtt ggaaatgatc tcaaatgcct ctttgctgta aaggtccagc gaacgacttt
     1141 ctgttccgga ctcctcggtc atcgttcgct gctcagtatc gattgtcact ctcataaatg
     1201 atctattagg cggaccttca gatttagttt ttccaatagc gcctggtttt cttcccgata
     1261 attctgattc attaggaatg ctgtcgtcac gccgcgtttt cccaggcttt caggcgcgac
     1321 gatggggtgc ccggaaccag gcacaaagca gccttgcttt aggggattga ggtcaacgat
     1381 acaatcaatc aattccggac gcggttctat cagatttgcg aaggtaacgc ctttagcacc
     1441 cgctccccag agagcaatct tttctcgctg agtta
//
LOCUS       DATCGC010000314         1311 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_304079, whole genome shotgun sequence.
ACCESSION   DATCGC010000314 DATCGC010000000
VERSION     DATCGC010000314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1311)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1311)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1311
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304079"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(23..301)
                     /locus_tag="VIJ87_03055"
     CDS             complement(23..301)
                     /locus_tag="VIJ87_03055"
                     /inference="COORDINATES: protein motif:HMM:NF017239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PqqD family protein"
                     /protein_id="HEY5443449.1"
                     /translation="MSISFNSTVSISPDVMVRKVGEESVLLDLKTERYLGLDDVSARF
                     WDLLTSGGSIQLAYETLLNEFEVDPERLRKDVDDFVQELSELGLVEQS"
     gene            complement(285..1301)
                     /locus_tag="VIJ87_03060"
     CDS             complement(285..1301)
                     /locus_tag="VIJ87_03060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443450.1"
                     /translation="MSFVLPVESAAEWTNCSTGFDYSLYGLRIRSNVRLTLDDIPMEG
                     NADVELRPGDPERFDAVASKIPPQHSDWIYQQQLSDDWTYLRYEGLFEFLVAPLGNII
                     LYRLISSVHLESFQTYALGRVFSFALVKMGFEPLHAATLVIEGRAVAFLGASTFGKSS
                     LAACFIAAGNQLLTDDTLRLEERDDHYVAFPGPPRLRLLPKIARLYLPNAGSGIVMNP
                     HEKDAKAPKLVFCLSPSQSFDEPVPLAAIYVVAAPRKVHRKQKISITPLSQLHALMNV
                     ISFTHNDELTNPNRLTRQLDAARRLISKVTIRSLAYPRVLASLDDVRNAVLSDLKEPY
                     VNII"
BASE COUNT          348 a          312 c          332 g          319 t
ORIGIN      
        1 ccccagcgaa accgctcatg atttaacttt gctcgactaa accaagctca cttagttcct
       61 ggacaaagtc gtcaacgtct ttgcgaagcc gctcgggatc cacctcaaac tcgttgagca
      121 atgtctcata cgctaactga atagatcccc cactggtaag caggtcccag aagcgcgcag
      181 agacatcgtc gagcccgagg tatcgctccg ttttcaagtc cagcaagacg gattcttcac
      241 cgacttttcg gaccatgacg tcgggcgaga tagaaacagt ggaattaaat gatattgaca
      301 tagggttctt ttagatctga aagcacggca tttctaacat cgtcgagaga tgcaagcact
      361 cgagggtagg caagtgaccg tatcgttact tttgaaatta accgacgagc tgcatcgagc
      421 tggcgagtta ggcgattagg atttgtaagt tcgtcattat gggtaaagct aattacattc
      481 atcaatgcgt gtagttgcga aagcggagtg atagatattt tttgtttgcg atgaactttt
      541 ctcggtgcag caacaacata gattgccgcc aacgggacgg gttcgtcaaa actttgagaa
      601 ggcgagaggc agaagacaag tttcggcgct ttcgcatctt tctcatgtgg gttcatcaca
      661 atgccacttc ctgcatttgg cagatagagt cttgctattt tcggcaacaa tcttaggcga
      721 ggtgggccgg gaaaggcgac gtagtgatcg tcgcgctctt caaggcggag cgtatcgtct
      781 gttagcagtt gattgccagc cgctatgaaa caagccgcca ggctcgattt gccaaatgtg
      841 ctggcgccga gaaatgccac cgcgcgccct tctattacaa gcgtcgctgc atgcaaaggt
      901 tcaaagccca ttttcaccaa tgcgaatgaa aagactcgac cgagtgcata tgtttgaaat
      961 gactccaggt gaaccgaact gattagtcgg taaagaatga tgttccccag gggagccacc
     1021 aaaaactcga agagtccttc atagcgaaga taagtccagt cgtcgcttaa ctgctgttgg
     1081 taaatccaat cggagtgctg gggaggaatt ttcgaagcga ccgcgtcaaa tctctcagga
     1141 tcgcctggac gtagttcaac gtcggcgttt ccttccatgg gaatgtcgtc aagagtcaat
     1201 ctaacgttac tgcggatacg tagaccgtaa agcgaatagt cgaagccggt ggaacaattt
     1261 gtccactctg cggcgctctc gacaggtaat acaaaactca aacccgatca t
//
LOCUS       DATCGC010000315         2973 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_437283, whole genome shotgun sequence.
ACCESSION   DATCGC010000315 DATCGC010000000
VERSION     DATCGC010000315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2973)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2973)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2973
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_437283"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..610)
                     /locus_tag="VIJ87_03065"
     CDS             complement(<1..610)
                     /locus_tag="VIJ87_03065"
                     /inference="COORDINATES: protein motif:HMM:NF012694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEY5443451.1"
                     /translation="MPTYVFKGRNRLNEIVVGERVADNREALRQILRREQVTLTSVKE
                     KGREIGIPKIGGRKKVKAKELSVFTRQFSVMIDAGLPLVQCLEILAQQQDNKYFQQIL
                     LQVRQDVEEGSTLAAAMARHPRVFDQLYSNMVEAGETGGILDIILQRLSTFIEKIVKL
                     KRDIISAMIYPAAVVLLAIAAVAVIMIVVIPQFQNIFLGLLGP"
     gene            complement(635..1816)
                     /locus_tag="VIJ87_03070"
     CDS             complement(635..1816)
                     /locus_tag="VIJ87_03070"
                     /inference="COORDINATES: protein motif:HMM:TIGR01420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus twitching motility protein PilT"
                     /protein_id="HEY5443452.1"
                     /translation="MRLNENVPQISLSELLRKLSELGGSDLHITTGSPPQVRVDGHLR
                     PLEAYRVLTSADTKQLAYSVLTDAQKHRFEENLELDFSFGVKGLSRFRANLFNQRGAV
                     GAVFRAIPYEIKAFEDLGLPQVVKQLCDKPRGLILVTGPTGSGKSTTLAAMIDKINRD
                     RHEHILTIEDPIEFLHNHKGCLINQREVNADTHGFAAALRTALRQDPDVVLVGEMRDL
                     ETIESALRIAETGHLTLATLHTNSASSTINRIIDVFPSDQQAQVRAQLSLVLEGILCQ
                     ALLPRAEGTGRAMALEVMVPNGAIRNLIREDKVHQIYSMMQTGQDKYGMQTFNQALAT
                     LYHNRKISLDTALQRSSNVDELRELIDRGAGLNTGNQGNKQHPSPYAQPRPVGARPTA
                     R"
     gene            complement(1855..2685)
                     /locus_tag="VIJ87_03075"
     CDS             complement(1855..2685)
                     /locus_tag="VIJ87_03075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443453.1"
                     /translation="MLRTIAISLILLLTVGVMLPFANSAHGVRQSAQVGIRQHRRYHS
                     RAWWHRYRARLRKKRAAAALAHRNSLLGQPQNIPVGDLGMNALQTVPTLRETMANPAT
                     VTATTANPAPMSAVTVTTPQINAAKVNTTTAKASDVKATVKSTAAKLPGEMNLSVVAL
                     SRPNPVFLTSREVSKMLGGTNVSELRRIVIDKMIVAGGWVTNDYVREVNGSRVFVVTA
                     HTPKSGNSPEKAWTFYFTEADGRIYGLTTEAPLESADRMSTEAERFINKLQATPQGNN
                     "
     gene            complement(2701..>2973)
                     /locus_tag="VIJ87_03080"
     CDS             complement(2701..>2973)
                     /locus_tag="VIJ87_03080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV-A pilus assembly ATPase PilB"
                     /protein_id="HEY5443454.1"
                     /translation="FTAEEAKTMKTFKGKGCSVCNNTGYKGRIGLYEVLEVTDEIREL
                     ILIGASALELRKKAIDDGMITLRGSGLQKIRSGVTTVEEVVRETVA"
BASE COUNT          669 a          761 c          801 g          742 t
ORIGIN      
        1 cagggccgag tagtccgagg aagatgttct gaaactgcgg aattacgacg atcatgatga
       61 cagcgaccgc ggctatggcg agcaggacca ccgccgccgg atatatcatc gcggagatga
      121 tgtcccgttt cagcttgacg atcttttcga tgaacgttga aagtcgctgc agaatgatgt
      181 cgagaatacc gcccgtctca ccagcctcga ccatgtttga atacaactga tcaaacactc
      241 gcggatgacg agccattgct gctgccaatg tagagccctc ttccacgtct tgtcggacct
      301 gcagcaggat ctgttgaaaa tacttgttgt cctgttgttg ggccaggatc tcaagacact
      361 gaacgagtgg taaacctgcg tcgatcatga ccgaaaactg tcgcgtgaag accgacagtt
      421 ccttagcttt cactttcttc cgcccaccaa tttttgggat accgatttct cgacccttct
      481 ctttgacgga ggtaagcgtg acttgctcgc gtcggaggat ctgacgcaga gcctcgcggt
      541 tgtccgcaac gcgctcgccg acaacgattt catttaatcg attgcggcct ttgaagacat
      601 aggtaggcat agcagtgggc tccagaggtt agatctatct tgccgttggc ctggcgccaa
      661 ccgggcgggg ctgagcatag ggactcgggt gttgtttgtt gccttgatta ccggtgttga
      721 gtccagcacc gcgatcaatc aattcgcgca actcgtcaac gttcgaggaa cgctgtagag
      781 ccgtgtcgag cgaaatcttt cgattgtgat aaagcgtcgc caaagcctgg ttgaaagtct
      841 gcataccgta cttgtcttgg ccggtctgca tcatcgagta aatctggtga actttgtctt
      901 cgcggatcag gtttcggata gcgccgttag gcaccatgac ctcgagcgcc atcgcccgac
      961 cggttccttc agcacgcggt aaaagcgcct ggcaaaggat tccttcgagc accaacgaca
     1021 actgcgctcg aacctgggcc tgctgatcgg aagggaacac atcgatgata cggttgatgg
     1081 tcgacgatgc tgagttcgtg tgcaatgttg ccagggtaag gtgacctgtt tcagcaatac
     1141 gtagcgctga ttcaatcgtt tcaaggtcgc gcatttcgcc gaccaatacg acatcaggat
     1201 cctgacgaag agccgtacgt agtgcagctg caaacccgtg agtgtcagca ttaacctcac
     1261 gctggttgat caagcaacct ttgtgattgt gaagaaactc gatcgggtct tcgatcgtga
     1321 gaatatgttc gtgacgatcg cggttaatct tgtcgatcat tgccgccagg gtggttgatt
     1381 tgcccgaacc ggttggtcca gttacaagaa tcaacccgcg tggtttgtcg catagctgtt
     1441 tgacgacttg cggaaggcca agatcttcaa acgccttgat ctcatacgga atggcacgga
     1501 agaccgcgcc aacagcaccg cgttgattga agaggttggc acgaaagcgg gaaagcccct
     1561 tcacgccaaa cgaaaagtcg agttcgaggt tctcttcaaa cctgtgcttt tgagcgtcag
     1621 ttaagaccga gtaagcaagt tgcttggtat ccgccgacgt caatacgcga taggcttcga
     1681 gaggtcgaag atgtccgtca actcgaacct gaggtggtga cccggttgtg atatggaggt
     1741 ccgaaccgcc gagttcggaa agctttctca gcagttcgga caaagagatt tgcggaacgt
     1801 tttcgttcaa tcgcattcgt gactcctagt ggaaagtgtt ctggtccttt agttctagtt
     1861 gttgccttgc ggggtcgcct gcaacttgtt gatgaaacgc tcggcttccg ttgacatgcg
     1921 atccgcagat tcaagcggag cttcagtcgt gagaccgtag atacgtccgt ccgcttcggt
     1981 gaaatagaag gtccaggctt tttcagggga gttcccgctc ttcggggtat gtgcggtgac
     2041 aacaaaaaca cgcgaaccat tgacttcgcg aacgtagtcg ttggtaaccc agccacctgc
     2101 aacgatcatt ttgtcgatca caattcgacg caactcagat acgttggttc caccgagcat
     2161 cttgcttacc tcacgtgatg tgagaaacac aggatttgga cgactgagag cgacgaccga
     2221 aagattcatt tcgccaggaa gttttgccgc agtgctcttc accgttgctt tgacgtcgct
     2281 ggctttggca gtagtcgtgt tgacctttgc tgcattgatc tgtggtgtag tgacagtgac
     2341 tgcgctcatt ggcgctggat tcgctgtcgt ggcagtcaca gtcgctgggt tagccatcgt
     2401 ctcacgcaaa gttggaacag tttgcaatgc attcatcccc aaatcgccga cggggatgtt
     2461 ttgcggttgg ccaagcaacg aattgcggtg agccaatgca gcggcagcgc gcttcttccg
     2521 tagacgggcg cggtagcgat gccaccaggc acgagagtga taacggcgat gctgtcggat
     2581 tcccacctgg gcactttgac gaacaccgtg tgctgaatta gcgaagggca acatcactcc
     2641 aacggtgaga aggagtatca gggatattgc tattgttctt aacatgtcag ttctcctcga
     2701 ttaggcgact gtttcacgaa cgacctcttc gactgtcgtg actcccgaac gaatcttctg
     2761 gagtcccgaa ccgcgcagag taatcatccc gtcgtcgata gccttttttc tcagttccaa
     2821 tgcggatgca ccgatcaaga tcaactcacg aatctcatcg gtaacttcca acacttcgta
     2881 gaggccaatt cgtcctttgt acccagtgtt attacaaacc gaacaaccct tgcccttgaa
     2941 ggtcttcatc gtctttgctt cttcggctgt gaa
//
LOCUS       DATCGC010000316         2086 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_337228, whole genome shotgun sequence.
ACCESSION   DATCGC010000316 DATCGC010000000
VERSION     DATCGC010000316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2086)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2086)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2086
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_337228"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1154
                     /locus_tag="VIJ87_03085"
     CDS             <1..1154
                     /locus_tag="VIJ87_03085"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0052621 - diguanylate cyclase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sensor domain-containing diguanylate cyclase"
                     /protein_id="HEY5443455.1"
                     /translation="EHPFHAATFANAVRVSMPKATSLHLTLGVTTKLARLLQEQAERE
                     IAVNRIATAIRNSLDLDSLLTTAANEVGRALNVKSCAVQVEGELVGEIKSSYYFRSGP
                     TVDLEEKGELLADVELVRACLPHSPKTWVIDGDDTHDTGVCAQAAVPLNYEGAFVGLI
                     LVESDDASRVWADNELLLLHTVADQLTVAVKQAHMYSQMEAQALTDGLTGCYNRRSFE
                     LQLERELHVATRNRQSLSLIMIDLDNFKHINDRAGHGTGDVALRTVAESLKAELRAVD
                     NAARFGGDEFAIILPQADTDGALLVAERLRKRISETHIPGFGPTTASFGLATFPRHAS
                     SKNLLVVAADRALYESKHSGRNRVSLPAEIDFDEEVYQLHPQEEPVEAI"
     gene            1340..>2086
                     /locus_tag="VIJ87_03090"
     CDS             1340..>2086
                     /locus_tag="VIJ87_03090"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter transmembrane domain-containing
                     protein"
                     /protein_id="HEY5443456.1"
                     /translation="MDDLKKFARYFRPYKLSLISGISCILGSVLFNVYVPLIVGQAID
                     ANWTSVSVSRLTVSALKVLGASVISGIFLFLQRRILIGMSRNIEYDLRKDFYVHLVNQ
                     PLAFFHEHRTGDLMARATNDLAAVRQLAGPMIMYSLQTVFVVVAVLPLMFRINWWLTL
                     LLFVTMPLVSLTVKFFGQQVHTRFEKIQEFFAHITARAQENFTGVRVVRAYAQEDAEI
                     QAFNELNQQYAERNLSLVRIDAMMRPLMQFL"
BASE COUNT          482 a          513 c          537 g          554 t
ORIGIN      
        1 ctgagcatcc attccacgct gctacatttg ccaatgccgt tcgcgtgtcg atgcccaaag
       61 caacatcgtt gcacctgaca cttggggtga caacgaaact tgcacgcttg ctacaggaac
      121 aagctgagcg cgaaattgcc gtcaatcgaa tagctactgc tatcagaaac tcgctcgacc
      181 ttgacagttt actgactacc gcggcgaacg aagttggtcg ggcgctaaac gtgaagagtt
      241 gcgccgttca agttgagggt gaactggttg gcgagatcaa aagcagttat tactttcgtt
      301 cagggccgac agtagacctt gaagagaagg gcgagttact ggccgacgtt gaactagtcc
      361 gcgcctgcct gccacattca ccaaagactt gggtgattga tggtgatgat acgcacgata
      421 ccggagtttg tgctcaagca gctgtgccgt tgaactatga gggcgctttc gttggcttga
      481 tcctggtgga atcagatgat gcttcgcgcg tgtgggccga taatgaattg ctcctgctgc
      541 acacggttgc tgatcagctt acagtcgctg tgaaacaagc acacatgtac tcacagatgg
      601 aggcgcaggc tcttaccgat ggccttaccg gttgttacaa ccgtcgatcg ttcgaactcc
      661 agcttgaaag agaacttcac gttgcgaccc gaaatcgcca gtcactgtcg ttgatcatga
      721 ttgacttgga taactttaaa cacattaacg atcgcgccgg acatgggaca ggagacgttg
      781 ccctgcggac tgttgctgag agcctaaaag ccgagttgcg tgcagtagac aacgccgctc
      841 gttttggtgg tgacgaattt gcaatcatcc taccccaggc cgatacagat ggggctctgc
      901 tggttgccga aagattgcgg aagcgaattt ctgaaactca tatcccgggc tttggtccga
      961 caacggcctc atttggactc gctacttttc ctcgccatgc atcatcaaaa aacttactcg
     1021 tagtggccgc tgaccgcgct ctttatgaat caaagcactc gggacgcaat cgagtaagtt
     1081 taccggccga aattgacttc gatgaagagg tctatcaact ccatccacaa gaggaaccgg
     1141 ttgaagcaat ctagtgcagt tgatcgttag aaggtttttt gtagacagtt ttgcagagcc
     1201 ggtgagtgaa agcttgccgg tttttgtttt tcagcgtgca cttgaggtct ccgtttggaa
     1261 tctgcgtcgt agatcgcgca tgatagccac acactatttc aattgattcg cgcccggggc
     1321 gttgctgtat tttttgtgta tggatgatct aaaaaaattc gcgaggtact ttcgtccata
     1381 caaattgtca ctcatctccg ggatcagctg catcctcggc agtgtgctat tcaacgtcta
     1441 tgttccattg attgtagggc aggcaattga tgcgaattgg acctccgtat ccgtatcacg
     1501 gctcactgtc tcagcgctca aggttttggg cgcaagtgtt attagcggca tcttcctctt
     1561 tcttcaacga cgtattctga tcggcatgtc gcgtaacatc gaatacgact tgcgcaagga
     1621 tttttacgtc catctcgtaa accaaccact agctttcttt catgagcatc gtactggcga
     1681 tttgatggcg cgcgcgacaa atgatcttgc cgcggtcaga caacttgccg ggccaatgat
     1741 catgtattca ctgcaaaccg tttttgtcgt ggtagccgtt ttgccgctga tgtttcgcat
     1801 taactggtgg ttgacgcttc tgttatttgt aacgatgccg ctcgtctcat tgacagtaaa
     1861 gttctttggt caacaagttc acactcgctt tgaaaagatc caggagtttt tcgctcacat
     1921 tactgctcgg gcgcaggaaa actttactgg tgtgcgggtc gttcgtgcat acgcgcagga
     1981 ggacgcagag atacaggcgt tcaatgagct caaccagcag tacgcagagc gaaacctcag
     2041 tctcgtgcgc atcgacgcga tgatgcggcc tctaatgcag tttctc
//
LOCUS       DATCGC010000317         1191 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_470383, whole genome shotgun sequence.
ACCESSION   DATCGC010000317 DATCGC010000000
VERSION     DATCGC010000317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1191
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_470383"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..215
                     /locus_tag="VIJ87_03095"
     CDS             <1..215
                     /locus_tag="VIJ87_03095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443457.1"
                     /translation="FDDLLHDSPANSTALPRLSFAARYARPNFAMVNNLAYYAENACL
                     MVSGHKRDSEVRFFSPPDSGPGLADV"
     gene            complement(281..>1191)
                     /locus_tag="VIJ87_03100"
     CDS             complement(281..>1191)
                     /locus_tag="VIJ87_03100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443458.1"
                     /translation="THVLGDQGVRIETDPFSEFPSSVFDRLCESVSVVCFQINLSVRS
                     RLPLRIRDFTNRLVERGVYVINGLVQDIRKSTLQAHLESIGLPSLRTTSSGPADELLF
                     VKTNLNYGGDLERWLPPEHIAAVGLELLISTDIGGAYYYKTVERGMLQEDIWKDPAIV
                     VEKYITNFEDSFYRVYFSGQQIIIVKAFAPGIIKKLSSDPRDTNFVTDLEHLKTGTDD
                     LSISTALKLDVATFVEKTPVEFGCIDIVHDGHDRHYIVDLNLTPYAGKRVADAFLIDF
                     LRAGITDPTRRKLSGAANSPLAADGS"
BASE COUNT          286 a          308 c          315 g          282 t
ORIGIN      
        1 tgtttgatga cctgcttcat gattccccgg ctaattccac cgcgctccct cgcctgagtt
       61 ttgcggctcg ctacgcccga cctaacttcg ccatggttaa caatctcgcg tactacgcgg
      121 agaatgcgtg cctgatggtg agcggccata aacgagactc tgaggtgcgc ttcttctctc
      181 cgccagatag tgggccaggc ctcgccgacg tttgacccat cagagcgcaa gcacagcgat
      241 cggttcgcct gttgatacgg ggtttttgag tctgaaacga tcaggagcca tcagcagcaa
      301 gcggtgaatt agcagcaccg cttagcttgc gtcgagttgg atctgtaatt cccgcccgca
      361 ggaaatcaat taggaatgca tcagccacgc gctttccagc gtacggagtg aggttaaggt
      421 caacgatgta gtgtctgtcg tggccgtcat gcacgatgtc gatgcatcca aactcaacgg
      481 gagtcttctc gacaaatgtg gcgacatcca gctttaacgc agtactgatc gataggtcgt
      541 ccgtaccagt cttaaggtgt tcgaggtccg tcacgaagtt cgtatcacgc ggatcgctcg
      601 acagtttctt gataatgccc ggagcaaagg ctttgacgat gatgatttgt tgtcccgaga
      661 agtacacgcg gtaaaacgag tcctcgaagt tcgtgatgta cttttcaaca acgatggccg
      721 ggtccttcca gatgtcctcc tgaagcattc cgcgctcaac ggttttgtag tagtaggctc
      781 cgccgatgtc ggttgagatc agaagttcca agccaacggc tgcgatgtgc tctggcggca
      841 accatctttc caaatctcca ccatagttca gatttgtctt cacaaacaga agttcgtcag
      901 cgggaccaga tgatgttgtt ctcagcgagg gaagcccgat ggactcaagg tgagcctgaa
      961 gggttgactt gcggatatcc tggaccaaac cgttgatgac ataaacacct cgttcgacta
     1021 aacgattggt gaagtcgcgg atccgcaacg gcaatcgact acgaactgat aagttgattt
     1081 gaaaacaaac tacggagaca gactcgcata agcgatcgaa taccgaggaa gggaattcgc
     1141 tgaaaggatc cgtctcgatc cgcacgcctt gatcaccaag aacgtgagtt a
//
LOCUS       DATCGC010000318         1695 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_337255, whole genome shotgun sequence.
ACCESSION   DATCGC010000318 DATCGC010000000
VERSION     DATCGC010000318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1695
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_337255"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1345
                     /locus_tag="VIJ87_03105"
     CDS             <1..1345
                     /locus_tag="VIJ87_03105"
                     /inference="COORDINATES: protein motif:HMM:TIGR02601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VPDSG-CTERM sorting domain-containing protein"
                     /protein_id="HEY5443459.1"
                     /translation="YWAFPVVSLGPAVISSHRFQTGDYYENAYLGSDSLLSVASIFNV
                     GGSTSFFNRSTAGSAFIENDVGSTNFFERSTAGTSSISNNDGTVNFFDNSSAGSAGFS
                     SFLGGGIAFFDNSTAGNATMGLLSFEGEAFVRFADSSNAGSATITLRFGTDIAAVSFE
                     DSSRGGTARIRFDGFPGDRAILDISAHDAPGVTIGSIEGEGGDGFLGANNLTVGSNNL
                     STTFPGVIQDGAPFGGGGTGGSLTKIGTGTFILTGANTYTGDTNVNRGVLQVDGSITS
                     NTFVNQSGRLAGTGTVNGNLTNNGRVSPGSAGSPGMLTVTGNYTQAQYATLMIQLAGA
                     NAGEFSVLNILGTANLSGQLKPVLLNGFLPTVGESFTFLQYGAVNGTLFMFNRNIDNL
                     PEHWEVSYFPTFAVLTVAAGNVPVPDQASTLLLLMLGLSALLMCRQHLVCKTDVN"
BASE COUNT          374 a          451 c          445 g          425 t
ORIGIN      
        1 ctactgggct ttcccagtgg taagccttgg accggcagta atctcttcgc atcggttcca
       61 aaccggagat tactatgaaa atgcttatct tggcagcgat tcgctgctct ctgtcgcgtc
      121 aatcttcaac gtgggcggct caacgagctt tttcaacagg tccactgcgg gaagcgcctt
      181 catcgagaac gacgtcggct caacgaactt tttcgagcgc tccactgctg gcacctcgtc
      241 catttccaac aacgatggca cagtaaactt tttcgacaac tccagtgctg gcagcgcggg
      301 cttcagctct ttcttggggg gcggtatagc gttcttcgac aactctactg caggcaacgc
      361 gacgatgggc ctcctttcgt ttgagggtga agcctttgtt cgctttgctg actcttccaa
      421 tgctggcagc gcgactatca ccctgaggtt tggtaccgat atagctgctg tttcttttga
      481 agactcttcg cggggtggca cagcgcgaat tcgctttgat ggctttccag gagaccgcgc
      541 catcctcgac ataagtgccc atgatgctcc cggggtgaca atcgggtcta tcgagggcga
      601 aggaggagat ggctttctag gagctaacaa tctaaccgta ggcagtaaca acttaagcac
      661 gacctttccc ggggtaattc aggacggcgc tccgtttggg gggggaggca ctggcggttc
      721 actgactaag attggcaccg gaacgttcat cctcacagga gccaatacct acactggcga
      781 caccaacgtc aatcgtggcg tgttgcaggt ggatggctct attacaagca atacatttgt
      841 caatcagagt ggtaggctcg caggcacagg gactgtcaat ggcaatctta ccaataacgg
      901 cagggtcagt ccgggaagcg ctggctcacc gggcatgcta accgtcacgg gtaactacac
      961 gcaggcgcaa tatgctactc ttatgatcca acttgcgggc gcgaatgccg gcgagttcag
     1021 cgttcttaac attcttggaa ctgcaaatct aagtggccaa ttgaagccag tccttctcaa
     1081 tggttttctt ccaacggttg gtgaatcgtt tactttttta caatacggag cggtcaacgg
     1141 gacactgttt atgtttaacc gcaacatcga caacttgcct gagcattggg aggtgagcta
     1201 tttcccaacg ttcgccgttt taactgtggc agcgggaaac gttcccgttc ctgatcaagc
     1261 ttcaacattg cttctcctga tgttgggctt gtcagcgttg ctgatgtgcc gacaacactt
     1321 ggtctgtaaa acagacgtga actaagtgtt tcgtgtccgt aaccgtggac ggggacactg
     1381 tcgctccagc agtctttggc acgatgaaag cgaatggtta gcggaactcc atcgggtgaa
     1441 tgcaatgaag atcgtttgcg ctagcagaac ccagtacgca tcgcgcacgc gtatcgatct
     1501 aacgtccaaa aggcggttat gaaactctcc ctgccctcgc gcacgtgcgc gtgcacgcag
     1561 agaggttatc ctcaacccgc ccgctaactc tactaagcca gttgagattg caggctctta
     1621 cctgtctcac tcttagtttc tcacgcgcgc gatctaaccg tcagagtaga catcgcgatg
     1681 ttacctatat ggcgt
//
LOCUS       DATCGC010000319         1400 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_104306, whole genome shotgun sequence.
ACCESSION   DATCGC010000319 DATCGC010000000
VERSION     DATCGC010000319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1400)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1400)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1400
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104306"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            72..>1400
                     /locus_tag="VIJ87_03110"
     CDS             72..>1400
                     /locus_tag="VIJ87_03110"
                     /inference="COORDINATES: protein motif:HMM:NF036483.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443460.1"
                     /translation="MDLDLVIPNPGLSLKEGAIEPWTRPQHEWAMNELKQFCRSEKIS
                     MTTPFVQLSRDEQQAIIEGKDEWAGVRGFFEWMETKKYKLHVRVFLSKYRGYTLCPDC
                     NGGRLRQEARDVKVGGQTLPFVCALSIKEAEAFFTSLELSTEQTAIAERILFEVQRRL
                     RFLVEVGLDYLTLDRLASTLSGGEAQRIQLATNLGSSLVGALYVLDEPSIGLHPRDND
                     RLIRLLKNLRDIGNTVLVVEHDAEMMRAADHILDIGPSAGELGGRVMYEGDFPGLMLD
                     ENSLTARYLRGDAEIKEPKQRRAVHKRQLSIQGASEHNLKSIDVDVPLDMLVCVTGVS
                     GSGKSTLIHDCIYAGMKKQRGEWQGHVGAFQKLEGTQSIDDVILVDQSPIGRTPRSNP
                     VTYIKVYDAIREVFSSTREAQSRGFDPSHFSFNLPGGRCEVCQGDGTVTVE"
BASE COUNT          317 a          354 c          394 g          335 t
ORIGIN      
        1 cgcgtctctt cagcttcaac aacccttacg gcgcatgtcc gacgtgccag ggctttggca
       61 ataccatcgg gttggacctg gatctcgtaa tcccgaaccc gggactgtct ctcaaagaag
      121 gggcgataga gccgtggact aggccgcaac acgagtgggc gatgaacgag ttgaagcagt
      181 tctgtcgttc agaaaagatc tcgatgacca cgccctttgt tcagctctcg cgcgatgaac
      241 agcaggcgat catcgaaggt aaggacgaat gggcgggcgt tcgcgggttc ttcgaatgga
      301 tggaaacaaa gaagtacaag ctccacgttc gtgtgtttct ctcgaagtat cgcgggtaca
      361 cgttgtgtcc cgattgcaac ggtggccgcc taaggcaaga agctcgagac gtgaaagttg
      421 gtggccaaac gttgcctttt gtttgtgcgt tgtcgattaa agaagctgag gcttttttta
      481 cttcactgga attgtcgacc gagcaaactg caattgcgga gcgtattctt ttcgaagttc
      541 aacgtcgcct gcggttcctt gtcgaggttg gacttgatta cctgacactc gatcgacttg
      601 cctcaactct gtcaggaggg gaagctcagc gcatccagtt ggctactaat cttggttcgt
      661 cgttggtggg agcgctctac gtgctcgatg aaccttccat cggtcttcac ccacgcgaca
      721 acgatcgatt gattcgcttg ctgaagaatt tgcgcgacat tggcaacacc gttctcgtgg
      781 tcgagcacga cgccgaaatg atgcgtgcag ctgaccacat cctcgatatc ggtccgtcag
      841 ccggtgaact cggtggacga gtgatgtacg aaggagactt ccccggtctc atgctggatg
      901 aaaactcgtt gacagcccgc tacctacgag gtgatgcaga gatcaaggaa cctaagcaac
      961 gtcgcgcggt tcataaacgt cagctctcga ttcaaggtgc ttccgaacac aatttgaaat
     1021 cgatcgacgt tgacgtgcct ctggacatgc ttgtttgcgt tactggagta agcggatccg
     1081 gaaagtctac tttgattcac gactgcattt atgcgggaat gaagaagcag cgtggtgagt
     1141 ggcagggaca tgtcggcgcg tttcaaaaac ttgaaggcac gcaatcgatc gacgacgtca
     1201 tcctcgtaga tcaatccccg attgggcgca cccctcgttc gaatccggtg acttacataa
     1261 aggtctacga cgccattcgc gaagtgtttt ccagcacgag agaggcgcag tcacgcggct
     1321 ttgatccatc ccacttctcc ttcaatttgc cggggggccg atgtgaagtt tgccagggtg
     1381 acggcacagt aacggttgag
//
LOCUS       DATCGC010000320         1027 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_337262, whole genome shotgun sequence.
ACCESSION   DATCGC010000320 DATCGC010000000
VERSION     DATCGC010000320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1027)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1027)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1027
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_337262"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..807
                     /locus_tag="VIJ87_03115"
     CDS             <1..807
                     /locus_tag="VIJ87_03115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443461.1"
                     /translation="HRNMNNLLGVRETNIAFSSRAASRSFLPPFAAGPIQTFGPWYEG
                     TYDGLVISATRRFARHFTLSGNYAFANETDNQLGITSLPSDSFVGIAPLVTETGTGRT
                     NETSSFVRANGRFVAKAGTFVNGPDLDKGPSDLSVDHTFQLNGLVELPWQFQISGIFR
                     AQSGFHYSRQPLALEDPDGDGTFNAIDHAAGRNFFTSPAFVNLDIRFGKRFNITERVK
                     LEALFEFFNVFNHQNPAAVQAQQNIVNSPFGSLRQVLPGREGQVGLRLEF"
BASE COUNT          245 a          256 c          255 g          271 t
ORIGIN      
        1 catcgcaaca tgaacaacct gcttggtgtg cgtgaaacaa atattgcgtt tagctcacgt
       61 gccgcaagcc gtagcttctt accacccttt gcggctggtc ccatccagac atttgggcca
      121 tggtatgagg gtacgtatga cggactcgtc attagcgcta cgcgacgctt cgcccgtcac
      181 ttcacactca gtggaaacta cgccttcgct aatgaaaccg ataaccagct tggcatcacg
      241 tcattgccgt ccgatagttt tgttgggatc gccccactcg taactgaaac aggtactggc
      301 agaaccaacg agacgagctc atttgttcga gcgaacggca ggtttgtcgc gaaggccggc
      361 acattcgtca acggccccga cctggataaa gggccctcag atctttccgt cgatcataca
      421 tttcagctta acgggttggt ggaactgccc tggcagtttc agattagtgg catatttcgg
      481 gcgcagagtg gttttcacta cagccgtcaa cctctggcac tcgaggatcc agatggagat
      541 ggcactttta acgccattga ccacgcagcc ggccgtaact tttttacaag ccccgctttc
      601 gtcaatctcg acatacgatt tggaaagaga ttcaacatta ccgagcgtgt aaagctcgag
      661 gcgttatttg agtttttcaa tgtgttcaat catcagaacc ctgctgctgt tcaagcacaa
      721 cagaacatcg tgaatagtcc gtttggctcg ttgaggcaag tgcttcccgg acgagaaggc
      781 caagtgggat taagactgga gttctaaatc gtgtttgatg tagagcagtt caaggttgaa
      841 aaaggtttcc gaggaaaggc tttttgccat gtcgactaca tctgcgcctt taggaaactc
      901 gctgtgatgc atcgaaattg agccgaatta tcttgcccca gaaggctatg tttatagcca
      961 tagtattctg atctgcgccg tcgttcggaa tatcgactgt catcggaagt tctgtatagg
     1021 tttttcc
//
LOCUS       DATCGC010000321         1018 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_137590, whole genome shotgun sequence.
ACCESSION   DATCGC010000321 DATCGC010000000
VERSION     DATCGC010000321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1018)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1018)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1018
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137590"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..271)
                     /locus_tag="VIJ87_03120"
     CDS             complement(<1..271)
                     /locus_tag="VIJ87_03120"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="catalyzes the transfer of phosphate between the C1
                     and C5 carbons of pentose; Derived by automated
                     computational analysis using gene prediction method:
                     GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HEY5443462.1"
                     /translation="MTFNRIVLVVLDGAGIGAMPDAPEWGDAGSDTFGHILESRKLHL
                     PNLQRYGLGNIRPLKDLPPLENPIGSYGRCALRSNGKDTTTGHWEM"
     gene            complement(365..>1018)
                     /locus_tag="VIJ87_03125"
     CDS             complement(365..>1018)
                     /locus_tag="VIJ87_03125"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY5443463.1"
                     /translation="IENLGGSNGTPYYDALERVADSIFRQPATDQVRRRAVVALTDGV
                     DSASNSDFSSAKQKLSRAGIACYFIQVNTEDFVEDRLMKDCQDDGRLTLSQRQLQRYR
                     QIFAPHAKPEDYQNFCQMGQFEKMSISRDLYSLARREMNDLALSSGGRSFVATDLSDA
                     RAAFASVAADIGTLYSLGYYPTNKARDGKYRAIQLQVRGLKEKAQIRARAGYYAPKQ"
BASE COUNT          238 a          261 c          268 g          251 t
ORIGIN      
        1 ccatttccca gtgaccggtc gttgtgtcct tgccatttga acgaagcgca caacgtccat
       61 aggaaccgat aggattctca agaggtggta gatctttgag cggtcggata ttccccagac
      121 cgtatcgttg aaggttcggc agatgaagct tgcgcgattc gagaatgtgg ccaaaagtgt
      181 ctgaccctgc atcgccccat tcaggggcgt cgggcattgc gccaataccg gcgccgtcga
      241 gaacaacaag tacgattcgg ttgaatgtca tttggtcttt cgatgtccga taagctttag
      301 cttgtcgtaa gttgcattag gaacgtcttc atagagtcag cgacaagcta aagcttatcg
      361 gacattactg cttcggcgcg tagtatccgg ctctagcacg tatctgggcc ttctctttca
      421 agccgcgcac ttgtagttga atcgcgcgat actttccgtc gcgagctttg tttgtcggat
      481 agtaacccag gctgtaaagc gtgccgatgt cagctgccac gcttgcgaat gcggcgcgag
      541 catcggacag atcagtagcg acaaaacttc gcccaccgga actaagcgcc agatcattca
      601 tctcacgccg ggcaagactg tataggtctc tactgattga catcttttca aactggccca
      661 tctgacagaa gttctgatag tcctcaggct tcgcatgtgg agcgaaaatc tgacggtacc
      721 gctggagctg tcgttgggaa agcgtcaaac gtccatcgtc ctgacagtct ttcatcaagc
      781 gatcttcgac aaagtcttcc gtgttcacct ggatgaaata acaagcgata cctgcgcgcg
      841 aaagcttttg cttagcagaa gagaaatctg aattgctggc tgaatcgacg ccgtcggtaa
      901 gagcgacaac tgcacgacgt ctaacctgat cggtggccgg ttggcgaaag atgctgtcag
      961 caactcgttc aagtgcgtcg tagtagggag tcccgttgct accacccaga ttctcgat
//
LOCUS       DATCGC010000322         1546 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_71138, whole genome shotgun sequence.
ACCESSION   DATCGC010000322 DATCGC010000000
VERSION     DATCGC010000322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1546)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1546)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1546
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_71138"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(163..543)
                     /gene="queD"
                     /locus_tag="VIJ87_03130"
     CDS             complement(163..543)
                     /gene="queD"
                     /locus_tag="VIJ87_03130"
                     /EC_number="4.1.2.50"
                     /inference="COORDINATES: protein motif:HMM:NF013411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HEY5443464.1"
                     /translation="MPGQFEVMIERNFSSAHQLRGYKGKCENLHGHNYKIEIYARGRE
                     LDNVGLLVDFVELKAAADEVVLYLDHRNINELPPFDELQPSAENLAKYVLERVAKRVS
                     DDRVQIYKVRCFETPTSVATYQLD"
     gene            complement(547..>1546)
                     /locus_tag="VIJ87_03135"
     CDS             complement(547..>1546)
                     /locus_tag="VIJ87_03135"
                     /inference="COORDINATES: protein motif:HMM:NF024703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016818 - hydrolase activity, acting on
                     acid anhydrides, in phosphorus-containing anhydrides
                     [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="helicase C-terminal domain-containing protein"
                     /protein_id="HEY5443465.1"
                     /translation="INRVETTLDLIKEKPPEVESIVRRLRQIRFDLEFIVTGSDRKFV
                     YWVERRGRGVFLRASPIDVAGLLQDKLFDEVPTVVLTSATLSSGGNFAFIRDRLGLDT
                     ADDLIAESTFDFESQAILYLPPQMPDPRSREWSDAAAEEVIKILNATDGRAFVLSTSL
                     AGMQSLFENVWAEIDYPCLVQGSAAKGQLLKRFRETPNAVLFATSSFWQGVDVRGDQL
                     SCVIIDKLPFAVPTDPIVAARQRYIEDSGGSSFHEYSVPQAIIALKQGLGRLIRSTTD
                     RGVLAVLDPRLRTKPYGRTFLRSLPQCRVTSQIEDLAAIFQPQVKAAQALTDYAEG"
BASE COUNT          399 a          422 c          368 g          357 t
ORIGIN      
        1 ggcgtttatc aacgggttgc atccgaactt cagactctgt acagcgtctc ttataacccg
       61 gctgataaga actacaacgg taactggcga agtgttgggg tgaaggtcaa gaatggaatt
      121 gcagtggcta gaaccaagcg tgggttttat gcgaagtaac ggtcaatcaa gttggtaagt
      181 cgcaacactc gtcggcgttt cgaaacacct cactttatag atttgcacac ggtcgtcact
      241 cacgcgctta gcaacgcgct ccaaaacata cttggcaaga ttttcagctg acggttgcag
      301 ttcatcgaac ggcggcagct cgttgatgtt tcgatgatcc aaataaagca ctacctcgtc
      361 ggcagcggct ttcaactcaa caaagtcgac taacagtccc acgttatcta gctcgcgtcc
      421 acgagcgtag atttcaatct tgtagttgtg tccatgcaaa ttctcacact tgcctttata
      481 gccgcggagt tggtgcgcgc tcgagaaatt gcgttcgatc attacttcaa attgtcctgg
      541 cataattcac ccctctgcat aatcagtcaa agcctgggca gcctttacct gcggctgaaa
      601 gatcgccgcc agatcctcaa tctgagacgt aacgcggcac tgcggcagac tccttagaaa
      661 cgtgcgaccg tatggttttg ttcttagcct gggatccaaa actgccagga cacctcggtc
      721 agtcgtactt cgaatcaaac gacccaatcc ctgtttcaac gcaattattg cttgaggcac
      781 gctgtactcg tgaaagctgg aaccgccact gtcttcaata taacgctgcc gagcagcgac
      841 gatcggatca gtgggaactg caaacggcaa cttatcgata atgacacagg acaattggtc
      901 accacgcaca tcgacgcctt gccaaaagct cgaggtcgca aacaacaccg catttggtgt
      961 ctcgcgaaag cgtttcagga gctgaccctt cgccgcgcta ccttgcacca gacatggata
     1021 gtcgatctcc gcccaaacgt tttcaaacaa cgactgcatt cccgccaggc tagtcgacaa
     1081 aacaaaagca cgaccgtcag ttgcgttcaa aatcttgatg acttcctccg cagctgcgtc
     1141 ggaccactcg cgtgaacgcg gatccggcat ttgaggaggc aagtaaagaa tcgcctggct
     1201 ctcaaaatcg aatgtcgatt ccgcaatcag gtcgtcagct gtgtcgaggc ccaggcggtc
     1261 tcgaataaat gcgaagttgc caccgctaga aagagttgcc gaagtcagga cgacagttgg
     1321 gacttcatcg aacaacttgt cctgtagtaa tcctgcgaca tcaatcggcg aagctcgcag
     1381 gaaaacgcca cgtcctcgtc gctctaccca gtaaacaaac tttcgatctg aaccggtaac
     1441 aataaactcc aggtcaaaac ggatctgacg cagacgcctc acgatgcttt caacttccgg
     1501 gggcttctcc ttgatgaggt cgagagtcgt ctcaactcgg ttgatt
//
LOCUS       DATCGC010000323         2368 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_71139, whole genome shotgun sequence.
ACCESSION   DATCGC010000323 DATCGC010000000
VERSION     DATCGC010000323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2368)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2368)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2368
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_71139"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2319)
                     /locus_tag="VIJ87_03140"
     CDS             complement(<1..2319)
                     /locus_tag="VIJ87_03140"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY5443466.1"
                     /translation="MRWSYAELVRTARQTARELQSHRIGEGDRVILCGSNSPEWAVAF
                     WACLLVGAVVVPLDRESTADFVSSVQQQTNAKLVVASRDATGVTQLTVPMLPLDELSD
                     VVKSHAAGPIITPNLSAATLAEIIFTSGTTSTPKGVMLTHGNLLANLLPLEHEIEKYL
                     KWERLVHPIRFLNLVPLSHVFGQLMGMFVPQLLGGEVHFHDSLNPAEIVERTRRDRIS
                     VIVLVPRVLESLRQWVERREGPTTFEPVDIHFLRRWWKFRKVHQRFGWKFWAFLSGGA
                     TLEEQTENFWRNLGFAVVQGYGMTETAALISVTHPFKTGHQSIGKLLPGYEVRLADSG
                     EIVVRGPSVSPGYWAKAGNPARVADEWLHTGDVGTIDDSGNLHFKGRTKEVIVTSAGL
                     NIYPEDLEAVLNRQPEVHSSCVIKWAGPRGDEPMAVLIPKTKESNVEHIIERANKSLL
                     EYQRIRRWKVWDAPSFPLTSTHKILKRQIAAEIEAENRDERREQSQSFVVSEAARITG
                     AEISAGNDPSLKLTTDLKLDSLGRVELLSALEDKYQIDIDEAAFTDATTVGDVERIVR
                     GEAAAAASSFQFPYPTWSHHFPVTWIRALLFYTIVLPITLVMTRMRVEGVKHVRNLSE
                     PVLFIANHVTLADHALILVGLPLRWRHRLAIAMEGERLRGWLNPPPGAGLLTRVKTLL
                     QYVLVTTFFQVFPLPRKTGFRRSFAYAAECVERGFSVLVFPEGERAPRGQIKMSKFKT
                     GIGLLAKELGIPVVPVKLDGLYELKRRQQYFAS"
BASE COUNT          555 a          653 c          596 g          564 t
ORIGIN      
        1 cgacgcgaag tactgttgcc ttcgcttgag ttcgtacaga ccatctaact tcacaggcac
       61 gactggaata ccgagttcct tcgctaacaa tccgatccct gttttgaact tactcatctt
      121 tatctgacca cgcggagcgc gttcaccttc aggaaacaca agcacgctaa acccgcgctc
      181 gacacactca gctgcgtaag caaaactgcg gcgaaagcca gtcttgcgcg gtagtggaaa
      241 cacctgaaag aacgttgtca ccagcacgta ctgcaacaac gttttgactc gtgtcagtaa
      301 acctgctcca ggtggaggat tgagccagcc gcgcaaacgc tctccttcca tcgcaatcgc
      361 aaggcgatgg cgccaacgta aaggcaagcc aacgagaatg agtgcgtgat ctgcgagggt
      421 gacgtgattg gcaatgaaga gcaccggttc actaaggttc ctcacatgct tcacaccttc
      481 aacgcgcatt ctggtcatta cgagagtgat cggcagaacg atggtgtaaa agagcagcgc
      541 gcgaatccac gttacaggaa agtggtgtga ccaggttggg taaggaaact ggaaggacga
      601 cgccgctgcg gctgcttcgc ctctaacaat tcgttcgacg tcaccgaccg tcgtggcatc
      661 agtaaatgcc gcctcatcaa tatcgatctg atacttatct tcgagcgcac ttagcagttc
      721 gactcggccc agcgagtcca gtttcagatc ggttgttaac ttcagtgaag ggtcgttgcc
      781 ggctgaaatt tctgctccag ttattcgcgc ggcttcagat acaacaaagc tctgcgactg
      841 ctctcgcctc tcatcacgat tttccgcttc aatctcggcc gcgatctgtc gtttcaggat
      901 cttgtgcgtg gaagtgagag gaaaactcgg agcatcccag actttccagc ggcgaattcg
      961 ctgatactcc aatagactct tgttggcccg ctcaataata tgctccacat ttgattcctt
     1021 agttttcgga atcaacacgg ccatcggttc atcaccgcgt ggaccagccc acttgatcac
     1081 acaacttgaa tgcacttccg gctgacggtt aaggacggct tcgaggtcct caggatagat
     1141 gtttagtccg gcactcgtga cgattacttc tttagttctt cccttgaaat gcagattgcc
     1201 ggaatcgtcg attgttccca cgtcaccggt atgaagccat tcgtcagcga cgcgagccgg
     1261 gttacctgcc tttgcccagt agcctggcga aacacttgga ccacgcacta cgatttcccc
     1321 gctgtccgct agtctcactt cgtaacctgg cagcaacttc ccaatggatt ggtgccctgt
     1381 cttaaacgga tgagtcacag agatcagggc tgcggtttca gtcatgccat agccttgcac
     1441 aacggcaaag ccaaggttcc gccaaaagtt ctcggtttgt tcctcgagag ttgcgcctcc
     1501 cgacagaaag gcccaaaact tccaaccaaa acgctggtgg acttttctaa acttccacca
     1561 acggcgcagg aagtggatgt ctacaggctc gaaagtcgtc ggtccttctc tgcgttccac
     1621 ccactgccgc agagactcga gcacgcgcgg aacgagtaca attacggaga tacgatctct
     1681 gcgtgtgcgt tcgactatct ctgccgggtt tagactgtcg tgaaaatgca cttcgccacc
     1741 gaggagttgc ggcacaaaca ttcccatcaa ctgcccaaag acatggctca gcggcacaag
     1801 gttcaggaag cgaattggat gaactaatcg ttcccatttc aaatattttt cgatttcgtg
     1861 ttccagcggc agaaggtttg cgagcaagtt gccgtgagta agcattacgc ctttgggtgt
     1921 tgaggtcgtg cccgatgtaa aaatgatttc ggcaagcgtt gctgcactta ggtttggtgt
     1981 aattattgga ccagcagcgt gtgacttgac cacatcactg agttcgtcga ggggaagcat
     2041 cggcaccgtt agttgagtga ctcctgttgc atcacgactc gctacgacta gctttgcgtt
     2101 tgtctgttgc tgtactgaag aaacaaagtc ggccgtgctt tccctatcga gtgggacgac
     2161 caccgcgcca accagtaggc atgcccagaa cgctacagcc cattcagggc tattacttcc
     2221 gcagaggatt acgcgatcgc cttcaccgat tcgatgagac tgtaattcgc gagcagtttg
     2281 ccgcgccgtc cgaacgagct ctgcatagga ccaacgcacg gtccgaagtc cgcgtctata
     2341 agcgaacacg gttgctgaat cgcgtttg
//
LOCUS       DATCGC010000324         1119 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_104337, whole genome shotgun sequence.
ACCESSION   DATCGC010000324 DATCGC010000000
VERSION     DATCGC010000324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1119)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1119)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1119
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104337"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..294
                     /locus_tag="VIJ87_03145"
     CDS             <1..294
                     /locus_tag="VIJ87_03145"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY5443467.1"
                     /translation="HSGKSYLDPAVTSQALNKSSPGDLKVAISSSMQLSNRESEVLKL
                     IASGYSNKEIAAQLQISVKTVEAHKANSMKKIGLRSRIDIVKYALLQGWLATN"
     gene            520..960
                     /locus_tag="VIJ87_03150"
     CDS             520..960
                     /locus_tag="VIJ87_03150"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5443468.1"
                     /translation="MGTPETFAESAAAPSIRRVLVVEDHDDTRAMLRTVLEMENLSVL
                     EAVDGEAAYAFAIKECPDLILMDFTLPIQDGLAATRAIRKHRIVGETPIIFLSGRAEP
                     AGRQAAFEAGCNDFLIKPIDLDEVLTTVRRWLSPAWRLENLEEL"
BASE COUNT          293 a          275 c          269 g          282 t
ORIGIN      
        1 cattccggta agagctatct tgatcccgca gtaacatctc aagcattgaa caagtcctcg
       61 cccggagacc tcaaagtagc catttctagt tccatgcagc tcagtaatcg tgaatcagaa
      121 gttctaaaac tgattgcgtc gggctacagc aataaggaaa tcgctgcaca gttacaaatc
      181 agcgtaaaaa ctgtcgaggc acacaaagct aattcaatga aaaagatcgg actgcgaagc
      241 agaatcgata tcgtcaagta cgctttactc caaggatggc tcgcgaccaa ctaaccctca
      301 gcttcacaag cgaaccctcc gctaagatta gggatattcc ctaactttca ttcgtctctt
      361 cctaatagag catctccagg cagcgcagta attttaagtc ctcaaaacta tcaaacgcct
      421 tctgttcgga acgaattgtc cacggcaagt cttgaaatcg tttcgacgcg ggagagcgaa
      481 accctctttt ttagatgaga caattgcttt aggttcccca tgggtactcc cgaaactttt
      541 gccgaaagcg ccgcggcccc ctcaattcgc agggtcttgg tagtggaaga tcacgacgat
      601 actcgggcaa tgcttcgaac agttcttgaa atggagaatc tttcagtact tgaggcggtc
      661 gatggcgagg ctgcctatgc tttcgcgatc aaagagtgtc cggatcttat tcttatggat
      721 tttacgcttc cgattcagga tggtcttgcc gccacgcgcg cgattcgaaa gcaccgcatt
      781 gtaggtgaaa cgccaataat tttcttatct ggcagagcgg aacctgctgg acgtcaagcc
      841 gcgtttgaag ccggctgtaa tgattttctg attaagccaa tcgatctgga cgaggtgcta
      901 acgacagtcc ggcgctggct tagtccggct tggcgcctcg aaaaccttga ggagttatga
      961 gagtggaaac caaattgaat ttgccgaggc tccttggatt gtttgagctt gatgaaaacg
     1021 ggaaagtctt gtactcgagt tttcagtcac cagaaggatc aatgcgtcga caggccgacc
     1081 ttgacggcgt cgacttcttc cgggaaatag cgtctttca
//
LOCUS       DATCGC010000325         1356 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_437404, whole genome shotgun sequence.
ACCESSION   DATCGC010000325 DATCGC010000000
VERSION     DATCGC010000325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1356)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1356)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1356
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_437404"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..481
                     /locus_tag="VIJ87_03155"
     CDS             <1..481
                     /locus_tag="VIJ87_03155"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY5443469.1"
                     /translation="VIGFIYDMVSDRDLAEELTQETFVRAYRGIHGMNAETKLSTWLF
                     GIARNVARESLRARVRANRHVDLEDKSVLDLSDNEPVPVERLLSKELNDLIRRSLATL
                     DEDKRVVFTLKVFHHCSYEEIADITGFSLAKLKSDLHRARAEMRRRIKPYAGVGYEV"
     gene            471..>1356
                     /locus_tag="VIJ87_03160"
     CDS             471..>1356
                     /locus_tag="VIJ87_03160"
                     /inference="COORDINATES: protein motif:HMM:NF024881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HEY5443470.1"
                     /translation="MKCEGCLELLEEYLDGELAEREASEIAAHLITCAECSSIRATLT
                     VEQEMFSRYDRELEVPALLWEQIAEQTVSPLSKPVSQNGFSTLVASWFRVPSFGFSLA
                     TAAALIVIALVIGMEYMRTQKPEPNKMIAETPRPIAAPSPEPKQVPKGDQAEPGNRDF
                     VASNGSSARKQRPIRHSTIDQSDVLSADTGYQDLDDQDTAKHIEQTQNLLRSIRNVEV
                     NDNDQEIDVSYDKAVSRRLLNENIVLRRDAEMKAKFPTKALLSDLEPFLIDIANLPDQ
                     AKPDDVRAIKERVQKTEIV"
BASE COUNT          350 a          309 c          396 g          301 t
ORIGIN      
        1 cgtcatcggt ttcatctacg acatggtcag cgatcgagat ctcgctgagg agttaaccca
       61 ggagactttc gttcgcgcct accgtggcat tcacggaatg aacgcagaga caaagctctc
      121 gacgtggctg tttggcatcg cgagaaatgt cgcccgcgaa tcacttcgag cgcgagtgcg
      181 agcgaacagg catgttgatc ttgaggacaa gtcggtgctg gatttgagcg acaacgagcc
      241 tgtccccgta gagcgattgt tgagtaagga gttaaacgac ttgattcgtc gttcacttgc
      301 gacgctggac gaagacaagc gagtggtgtt cacgctgaaa gtgtttcacc actgcagcta
      361 tgaagagatt gccgacatca ccgggttttc cctggcgaaa ttgaaaagtg atttacatcg
      421 ggcgcgagcc gaaatgcgac ggcgcattaa gccgtacgca ggagttggat atgaagtgtg
      481 aaggttgttt ggagttgttg gaagagtatc tcgacggcga gttggccgag cgcgaagcga
      541 gtgagatcgc ggcgcacctg attacctgtg cggagtgttc atccattagg gcaacgctga
      601 cggtcgagca ggaaatgttt tcgcgttatg accgtgagct tgaagtgccg gcgttgttat
      661 gggagcaaat tgctgagcaa acggtgtcgc ccttatcgaa gcccgtttcg caaaatggtt
      721 tcagtacgct ggtcgccagt tggttcaggg taccttcatt tggattctcg ctagcaactg
      781 cggctgcgtt gattgtgatc gcattggtga ttggcatgga gtacatgcgg actcagaagc
      841 cagaaccaaa caagatgatt gccgaaacgc cgcgtcccat cgctgctcca tcgccagagc
      901 cgaaacaggt gccgaaaggt gatcaggcag aacccggcaa ccgtgacttt gttgcaagca
      961 atggatccag cgcaagaaag caaagaccaa ttagacattc gaccatcgat cagtcagacg
     1021 tcttgtcggc agacactggc tatcaggatc tagatgatca ggacactgct aagcatatcg
     1081 agcaaaccca gaatctattg cgttcgattc gaaacgtgga agtaaacgac aacgaccagg
     1141 agatcgatgt cagttacgac aaggcggtat cgcgacggtt gctaaatgaa aatattgttc
     1201 tgcgccgtga tgcagagatg aaagcaaagt ttccaaccaa ggcgttgctg agtgacttag
     1261 agccgttctt aatcgacatt gcaaatctgc cagatcaagc gaaaccggat gacgtgcggg
     1321 ccatcaagga gcgggtacag aagacagaga ttgttg
//
LOCUS       DATCGC010000326         1393 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_304181, whole genome shotgun sequence.
ACCESSION   DATCGC010000326 DATCGC010000000
VERSION     DATCGC010000326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1393)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1393)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1393
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304181"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1393)
                     /locus_tag="VIJ87_03165"
     CDS             complement(<1..>1393)
                     /locus_tag="VIJ87_03165"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: protein motif:HMM:NF013007.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEY5443471.1"
                     /translation="EDWDGLVALGKEQEREGAHILDVNVDFVGRDGEKDMHELASRLV
                     TNVKIPMMFDSTEWQKMEAGLQHAGGKSILNSTNYEDGVPRFLKVIDLAKEYGASVVI
                     GTIDEEGMARSAEKKFEIAKRAYEQATGEAGLPASDIFFDALALPISTGIEEDRKNAL
                     ATIEGIRKIKNELPGAFTILGVSNVSFGLNPASRVVLNSVFLHDAVEAGLDAAIVNAS
                     KIEPLNRIGEQELKVARQLINDERKFEGDVCTYDPLIEFTKLFEGVKAKTAKKASKGE
                     TVEERLKSHIIDGEKIGLEDELKTALGQYSALEIINNILLEGMKVVGDLFGSGQMQLP
                     FVLQSAEAMKSAVRYLEPFIEKKGGATAKGKMVLATVKGDVHDIGKNLVDIILTNNGY
                     KVFNLGIKQTIDSILDACEEHEADAIGMSGLLVKSTLIMKENLELMNERGIKVPVVLG
                     GAALTRRYVEDDLK"
BASE COUNT          290 a          393 c          320 g          390 t
ORIGIN      
        1 tttgaggtcg tcttctacat aacgtcgggt gagtgcagcc ccgccaagaa caacgggaac
       61 ctttatcccg cgctcattca tcagctcaag gttctccttc attattagcg tcgactttac
      121 gagtaaaccg ctcatgccta tagcgtccgc ctcgtgttcc tcgcacgcgt cgagaatgct
      181 gtcgatcgtc tgcttgattc ccaggttgaa gactttgtag ccattgttgg tcagaatgat
      241 atcgaccagg tttttcccga tgtcgtgaac gtcacctttt actgtagcga gtaccatttt
      301 gcccttggcc gtagcaccgc ctttcttctc aatgaatggc tcaaggtaac gcaccgccga
      361 cttcatcgcc tcagctgact gcaacacaaa tggcaactgc atctgaccgc tgccgaacag
      421 gtcaccaacg accttcatcc cttcgagcag gatgttgttg atgatctcaa gagccgaata
      481 ctgaccgagc gcagtcttca attcatcttc aaggcctatc ttctcgccgt cgatgatgtg
      541 actcttcaaa cgctcctcga ccgtttcacc cttgctggct ttcttcgctg ttttggcttt
      601 gactccttca aatagcttgg tgaactcgat gagtggatca taggtgcaaa cgtcaccttc
      661 aaacttgcgc tcgtcgttga tcaattgacg cgcgaccttg agttcctgtt cgccgatgcg
      721 attcaacggc tcgatcttac tggcgtttac aattgcggca tccagacccg cttcgaccgc
      781 gtcgtgcagg aaaactgaat tcaaaaccac tcgtgaagct gggttgagac cgaacgagac
      841 gttagatact ccaagaatcg taaaagcacc tggcagttca ttcttgatct tgcgaattcc
      901 ctcgatggtt gcgagtgcat tcttgcggtc ctcttcgatt ccggtcgaga tcggcagggc
      961 taacgcgtcg aagaaaatgt cagacgcggg tagtccggct tcaccggtcg cttgttcata
     1021 agcacgtttc gcaatttcga atttcttttc cgcgcttcgc gccatcccct cttcgtcgat
     1081 tgttccgatg acgacgctag cgccgtactc ttttgccagg tcaattactt ttaggaaacg
     1141 tgggacgccg tcttcatagt ttgttgaatt gagaatcgac ttaccacccg cgtgctgcag
     1201 tcccgcttcc attttctgcc actcggtaga atcgaacatc atcggaattt tgacgttagt
     1261 tacgagtctg gaagcaagct cgtgcatatc tttttcgccg tcgcgtccga cgaagtcgac
     1321 gttcacgtca aggatatgag cgccttcgcg ttcttgttcc ttacccagtg cgactagacc
     1381 atcccagtct tca
//
LOCUS       DATCGC010000327         1277 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_6321, whole genome shotgun sequence.
ACCESSION   DATCGC010000327 DATCGC010000000
VERSION     DATCGC010000327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1277)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1277)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1277
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6321"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1277)
                     /locus_tag="VIJ87_03170"
     CDS             complement(<1..>1277)
                     /locus_tag="VIJ87_03170"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HEY5443472.1"
                     /translation="QARLQIAIDVVLVTWLVWYSDVINSPYIALYIVVIAVSSLFLGP
                     RDAVVTSVGSAAAFTTCALVLLQRLPVNFADDSLSQTIQSVGLFDIAFLVVGLLSARL
                     AERQSRSDVRLHEATQSLANLRALHERIVESIRSGLVTTDLQGHIFSFNAAAEEITGH
                     RARDLKGQNASILLGALDDRIAATVKAIETGEVSPRFETDCLTAEGLRLRLGFSMSPL
                     SSEAGDITGMVIAFQDLTQIRALEETSRRQDRLAAIGRMAASIAHEIRNPLAAMRGSI
                     QMLRSEMNSDPSQAELMEIILRESDRLNRIITDFLNYARPRSPVQSRVDVADLLHQTF
                     ALLRHSPEINENQKVVEELPASPLVLDADAGQLKQVFWNLARNALTAMPDGGTLTASV
                     EMNSNSRVRIAFSDTGKGMTPEQVEHLFEPFSS"
BASE COUNT          313 a          352 c          333 g          279 t
ORIGIN      
        1 cgatgaaaac ggctcgaaca agtgctccac ctgttcagga gtcatgcctt tgccagtgtc
       61 actaaacgca atgcgaactc tgctgttgga attcatctcg acgctggctg ttaacgttcc
      121 gccgtctggc atggccgtca aagcattccg tgccagattc cagaacactt gctttaactg
      181 cccggcgtca gcatcaagaa cgagcgggct agccggtaac tcttcaacga ccttctggtt
      241 ctcattaatc tcaggactgt gtctcagcaa cgcgaatgtc tgatgcagca ggtctgcaac
      301 atcaacccgc gactgcaccg gcgacctggg gcgtgcatag ttaagaaagt cggtaatgat
      361 tcggttgagg cgatccgact cacgcaggat gatttccatc agttccgctt gcgacggatc
      421 gctgttcatc tcagagcgca gcatctgaat agaaccgcgc atcgctgcga gtggattacg
      481 tatctcgtgc gcaatcgaag ctgccatgcg gccgatcgcc gccagacgat cctgacgtct
      541 cgatgtttct tcgagcgccc ggatctgcgt cagatcttga aaggcgatca ccattcccgt
      601 gatgtcaccg gcttccgatg acaaaggaga catgctgaaa cccagtcgca atctcaaacc
      661 ctcggcggtc aaacagtcgg tttcaaatcg tgggctgacc tcaccagttt caatggcttt
      721 gaccgtcgcc gcgattctat cgtccagtgc gccaagcaga atggatgcat tctgaccttt
      781 taggtcacgc gcgcgatgac cggtaatctc ttcagccgcg gcgttgaagc tgaagatgtg
      841 gccctggaga tcagtcgtaa ccagtcccga gcgaatcgat tcaactattc gctcgtgaag
      901 cgcgcgaagg tttgcgagtg attgagttgc ttcgtgtaaa cgtacatctg aacgtgattg
      961 tcgttcagca agacgtgcgg ataacaaacc caccaccaga aacgcgatat cgaagaggcc
     1021 gactgattgg attgtttgcg ataacgaatc atcagcaaaa ttgacgggca gccgttgtag
     1081 cagcaccaac gcgcaggttg taaacgccgc cgcactacca actgacgtga caacggcgtc
     1141 tcgtggtcca agaaacagac tcgagactgc gatgacaaca atataaagcg caatgtaagg
     1201 cgagttgatg acgtcggaat accacaccag ccacgtcacc aatacgacat cgatggcgat
     1261 ctgaagtcgc gcctgga
//
LOCUS       DATCGC010000328         1200 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_437520, whole genome shotgun sequence.
ACCESSION   DATCGC010000328 DATCGC010000000
VERSION     DATCGC010000328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1200)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1200)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1200
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_437520"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..690)
                     /locus_tag="VIJ87_03175"
     CDS             complement(<1..690)
                     /locus_tag="VIJ87_03175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443473.1"
                     /translation="MKNQIRVLLQTTIPYNEDDWHIGRFSLLNQCLSLATDEQGNKVF
                     EVTVRNREQNPAGNDAVLSELDKSDFDELWLFAVDVGDGLSVADCQGITRFRQRGGGI
                     LATRDHQDLGSSLCTLGGVGAAHFFHTKQQEPDVSRHERDDQDNRDISWPNYHSGANG
                     DYQALTIVNPAHEIMRNSKNASGVIEYFPAHPHEGAVGVPDGETSARVIATSLSLTTK
                     RSFNLMVAFESS"
     gene            complement(730..1119)
                     /locus_tag="VIJ87_03180"
     CDS             complement(730..1119)
                     /locus_tag="VIJ87_03180"
                     /inference="COORDINATES: protein motif:HMM:NF022963.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3224 domain-containing protein"
                     /protein_id="HEY5443474.1"
                     /translation="MTKHAAGTFEVKLTPEPDASGEAVVGRMSIDKQFQGDISGTSKG
                     VMIMAGTAVPGSAGYVALEKVSASIDGKSGTFYLQHHGIMNRGEGKLSVVVIPDSGTD
                     GLTGLSGTMAIKIEDGKHFYEFEYTIE"
BASE COUNT          266 a          326 c          288 g          320 t
ORIGIN      
        1 tgagctttca aaagccacca tcaagttgaa agatcgtttg gttgttagac tcaggctcgt
       61 tgcgataaca cgagctgacg tttcgccatc gggtactcca accgcgccct cgtgcggatg
      121 tgctggaaaa tactcgatca ctcccgaagc attcttcgag ttgcgcatga tctcatgagc
      181 agggttgacg attgtcagag cctggtagtc gccgttggcg cctgaatgat aattcggcca
      241 tgagatgtct cgattgtcct gatcgtcgcg ctcatgtcgc gacacatcag gctcttgctg
      301 ttttgtatga aagaaatgtg ctgccccaac gccgcccagc gtgcacagcg aagagccaag
      361 atcctgatgg tcgcgcgtcg ccaggattcc gccaccacgt tggcgaaagc gggtgatgcc
      421 ctggcagtcg gccacggaga gtccgtctcc cacatcaacg gcgaagagcc ataactcatc
      481 aaaatcagat ttgtcgagtt cactgagaac cgcgtcgtta cccgcaggat tctgttcgcg
      541 attgcgcacc gttacttcaa aaactttgtt gccttgttcg tctgtcgcca aactcaggca
      601 ctggttgagc aatgagaacc tgcctatgtg ccagtcgtcc tcattgtagg gaatcgttgt
      661 ttgtaacagg acacgtattt gatttttcat ttggaaccgg cagatcaagc ttgagatttg
      721 ggacaaagct tactcgatcg tgtactcaaa ttcgtaaaaa tgctttccgt cttcaatctt
      781 tatggccatc gtaccggaaa gaccggttaa gccatcggtc ccggagtcgg gaatcacaac
      841 aactgacagt ttgccctcgc cgcgattcat gattccgtga tgctgaagat aaaaagtgcc
      901 actcttacca tcgattgaag cgctaacctt ttcgagagcg acataacctg ctgaacctgg
      961 cacagcggtt ccagccatta tcatcacacc tttgctcgtt ccgctgatgt caccttgaaa
     1021 ctgtttgtcg atcgacattc tcccgacaac tgcttctcca gacgcgtctg gctctggagt
     1081 taacttcacc tcaaacgttc ccgctgcgtg tttcgtcatg tgttctccgt tcttgtgttc
     1141 gaaatgtttt agcttgtcgt gtctttccca acgcgcgcca tcagtttctc agcgacaagc
//
LOCUS       DATCGC010000329         2854 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_403929, whole genome shotgun sequence.
ACCESSION   DATCGC010000329 DATCGC010000000
VERSION     DATCGC010000329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2854)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2854)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2854
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_403929"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..974
                     /locus_tag="VIJ87_03185"
     CDS             <1..974
                     /locus_tag="VIJ87_03185"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY5443475.1"
                     /translation="GRLSGFFYRWLTPGLLLGRPRKVKFVHTYHGHIFHSYYGRLKTS
                     VFIAIEKMLAWLVTDRLVVVSQQQGTEICNQFGVGKLEQIRVIPLGLDLEVFDGGSAR
                     RQKLRDELGIDDNTILVGIVGRLTEIKNHEMFLQVVSEFKKIKTSAAAQVRFVIIGDG
                     SLRKDLEELSRNLSLTSDVIFAGERNDPQFFYPALDVVALTSRNEGTPLTLIEAMANN
                     RPVIATRVGGVVDLLGPVVEDGSYKICERGISVPAGDVDAFASGLVALVSDAKLQNKL
                     ATRGFEFVRAKYPKERLLSDIRNLYDELLNPEPKRQPQINHITQTLN"
     gene            1017..2000
                     /locus_tag="VIJ87_03190"
     CDS             1017..2000
                     /locus_tag="VIJ87_03190"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HEY5443476.1"
                     /translation="MRVLITGGAGFIGSHLADAYLERGDEVYVIDDLSTGRIENIQHL
                     KGQPRFHYTIDTVHNHPLTAELVDQCDVVFHLAAAVGVKLIVESPVRTIETNVRGTEV
                     VLSIANKKKKKVLVASTSEVYGLSTDVPFREDGNLVMGATTKGRWSYACSKAIDEFLA
                     LAYWREKKLPTVVVRLFNTVGPRQTGQYGMVIPTFVRQALSGRPITVYGDGKQSRCFG
                     YVGDIVGALIKLMDHKDAVGNVFNIGSNEEISILQLAQRVKELTQSESEIVFVPYDEA
                     YEEGFEDMPRRVPDISKIHNLVGFQPQMSLDGILETVIDYQSGRRSASASD"
     gene            2036..>2854
                     /locus_tag="VIJ87_03195"
     CDS             2036..>2854
                     /locus_tag="VIJ87_03195"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: protein motif:HMM:NF013146.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MraY family glycosyltransferase"
                     /protein_id="HEY5443477.1"
                     /translation="MSTSLRTLLPVASSFLLAMVLTPVVRSFARRYGFVAKPKTDRWH
                     KAPTAMLGGAAIWLSVVLSIQFFVPHTTYSWVILRASTFLFLVGIVDDILHIKPYQKL
                     IGQIMGSAFVVYYGLSLPWTGSALVNMALAIFWLIGITNAINLLDNMDGLASGIAIIA
                     AGFLGLSFVSTGQFMEALTMVAFAGALLGFLVYNSNPASIFMGDCGSMFVGFFLASSA
                     LVNVSGGRSRSLLPVLAVPILVLFIPIFDTTFVTVLRKLSGRAASQGGRDHTSHR"
BASE COUNT          656 a          643 c          802 g          753 t
ORIGIN      
        1 ttgggagatt gtctggcttt ttctaccgtt ggcttacccc agggttgttg ctgggtcgtc
       61 cacgcaaggt gaagttcgtt cacacctatc atggtcacat ctttcatagt tactacggta
      121 gattaaagac aagtgtgttc attgcaatcg agaagatgtt ggcgtggctg gtgacggatc
      181 gattggtagt tgttagtcag caacagggaa ccgagatttg taaccagttt ggtgtcggca
      241 aactcgagca gattagagtc attcctctgg gcctcgattt ggaggttttt gatggcggct
      301 ccgcaagacg gcaaaagctt cgagatgagc ttggaataga cgacaacact attttagtcg
      361 gtatcgtggg acggcttact gagatcaaga accatgaaat gtttctgcaa gtcgtcagtg
      421 aatttaagaa gatcaagacg tcggccgccg cgcaggtacg ttttgttatt attggtgacg
      481 ggtcgctccg gaaagatctg gaggagctga gtcggaatct gagtttgacg agcgacgtaa
      541 ttttcgcagg agagagaaat gatccgcagt tcttttatcc ggcgctcgat gtagttgcgc
      601 taacgtcgcg caatgaggga acgccgttaa cgctgattga agcgatggcg aacaatcgcc
      661 cagtgattgc gacgagggtc ggtggtgtag ttgatttact gggccctgtt gttgaggacg
      721 gaagttataa gatttgtgaa cgagggataa gtgttccggc tggagatgtc gacgctttcg
      781 cttccggact ggttgcgtta gtaagcgatg cgaagcttca aaacaagcta gcgactaggg
      841 gatttgagtt tgtgcgcgca aagtatccga aggaacgact attaagcgat attaggaatt
      901 tgtacgacga gttattaaac cctgaaccca aaaggcaacc acagattaat cacattacac
      961 agacattgaa ttgagcagat ctaatctgtt ggacgagaga gaaggagagt caacatttgc
     1021 gagtactgat cacgggaggc gccggtttca ttggttcaca cctggccgat gcctatctgg
     1081 agcgcggcga cgaagtttac gttatcgacg atttgtctac tggccgaatc gagaatattc
     1141 agcacctcaa aggtcaaccg cgctttcatt acactattga tactgtccac aaccatccat
     1201 tgactgctga gcttgtagat cagtgcgatg ttgtattcca cctggctgcg gctgtcggcg
     1261 tgaagttgat cgttgagagt cccgtgcgaa cgattgaaac aaacgtgcgc ggcacggaag
     1321 tggtcctttc aatagccaac aagaaaaaga aaaaggtttt ggtggcgtca acttcggaag
     1381 tttatggtct gagcacggac gtgccctttc gtgaagatgg caatcttgtg atgggcgcga
     1441 cgaccaaggg ccgttggagt tatgcatgtt caaaggcgat tgatgagttt ttagcgcttg
     1501 cctattggcg tgaaaagaag ttgccgaccg tagttgtcag actcttcaat acagttgggc
     1561 ccaggcagac cgggcagtac gggatggtga tcccgacgtt tgtgcggcag gcattgtccg
     1621 gacgtccgat tacagtctac ggtgacggga aacagagccg ctgttttgga tatgtgggcg
     1681 acattgtcgg ggcgttgatc aaactgatgg atcacaagga tgctgtcggc aacgttttca
     1741 atattggttc caacgaggag atttcgattc tccaactggc ccaacgtgtc aaagagttga
     1801 cgcagtcaga atctgaaata gttttcgttc cttacgacga ggcgtatgag gaaggctttg
     1861 aagatatgcc gcgtcgtgta cctgacattt ccaagataca taacctggtt gggtttcagc
     1921 cgcagatgag tttagacggc atactggaga ccgtaatcga ctatcaaagt ggcaggcggt
     1981 cggcctcagc gagcgattga tactctggtg cttaccgtcc taacctcggt gaaatatgtc
     2041 cactagtctg cgaacacttc ttcccgttgc cagctcattc ctgctggcaa tggttctaac
     2101 gccggtggtc cgaagctttg cccggcgtta cgggttcgta gccaaaccca agacagatcg
     2161 ctggcacaaa gcgccgacgg caatgcttgg cggggccgcg atatggctct ccgttgtcct
     2221 aagcatccag ttctttgttc cacacacaac ctattcatgg gtgatattga gagccagtac
     2281 ttttttgttc ctggttggaa tcgtcgatga catccttcac atcaagccct accaaaaact
     2341 gatcggccag atcatgggat cggcctttgt cgtttactac gggctgagtc ttccgtggac
     2401 cggatcagcg ctggtaaaca tggcgctggc gattttttgg ttgattggca tcaccaacgc
     2461 aataaatctc ctggacaaca tggacggtct tgcgtcgggt atcgcaatca tagcggccgg
     2521 ctttctcgga ctcagttttg tctccaccgg acagtttatg gaagctctga cgatggtcgc
     2581 ctttgccggc gccttgttgg gtttcctcgt ctataactca aaccctgcgt cgattttcat
     2641 gggtgactgc gggtcgatgt ttgtgggatt ttttctggcg agctcggcac tggtcaacgt
     2701 cagtggtggc cgatcacgga gcttgttgcc ggttctggca gtcccgattc ttgttctctt
     2761 cataccaatc tttgacacga cctttgtaac cgtgcttcgc aagctctcag gtcgggcagc
     2821 ctcccaggga ggacgcgatc atacttcgca tcga
//
LOCUS       DATCGC010000330         1414 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_370636, whole genome shotgun sequence.
ACCESSION   DATCGC010000330 DATCGC010000000
VERSION     DATCGC010000330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1414)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1414)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1414
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_370636"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            161..>1414
                     /locus_tag="VIJ87_03200"
     CDS             161..>1414
                     /locus_tag="VIJ87_03200"
                     /inference="COORDINATES: protein motif:HMM:NF033542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEY5443478.1"
                     /translation="MSKQNVELAAFIGLDWADEQHAVCLQGAGESRREISTLDQTPEG
                     LQAWIHQLRARFGGRPVAVAVEQARGSLIYALMHVDFLHLYPVNPQTLAKLRQAFYPS
                     GAKDDPGDAQLLLEVLLNHRDHLRVWVPDDVLTRSIQLLTEGRRKLVGERTALTNQLI
                     AALKMYFPQALDWFGDLHTPRACAFLYRWPSLQQLKTATSSSVRKFYQNQGYRGEDKL
                     KQLIQDIQQALPLTGDEAVLLASTMMVQALVKQIPSLTESIEEYDRKIAALFKSHDDS
                     TLFGSFPGAGPTLAPRLLAVFGSDRSRFEYAAEVQQLSGIAPVTEKSGKACWVHWRFA
                     CSKFLRQSLHEFAGQSILKSAWARAYYQQQRARGSSHQAALRALAFKWIRIIFRCWKD
                     RTPYDEAKYCQSLQLRGSRLASTLKT"
BASE COUNT          305 a          388 c          378 g          343 t
ORIGIN      
        1 gtccacccca ccgcatcaac ggttagagga gactttcgaa cgcgatcggc gccgagagcc
       61 aaacgtatac tcagatgttg tccttcgagg actcgactat aaggtctatg cgcgctctct
      121 gttggtctgg tttaggcgaa aacagtgaag gagttatctt ttgtcgaaac agaatgtcga
      181 actcgccgcg tttataggat tggattgggc cgatgaacaa cacgccgtct gtttgcaagg
      241 cgcaggagaa tcgcgaagag aaatctcgac gctggatcaa acaccggaag gtttgcaggc
      301 ttggattcat cagttacgtg cccgctttgg gggccggcct gttgctgttg ccgtcgaaca
      361 ggcacgtgga agcttgattt acgccctgat gcatgtcgat tttcttcatc tctaccccgt
      421 gaatccgcag actttggcga agctgcggca agcgttttac cccagcgggg ccaaggacga
      481 tccgggcgat gcgcagttgt tgctggaagt gttgttgaat catcgggacc acttgcgtgt
      541 ttgggtccct gatgatgtgc ttactcgcag cattcagtta ctaaccgaag gtcgccgcaa
      601 gctggtgggt gagcggaccg cattaaccaa tcagctcatt gcggcgttga aaatgtactt
      661 cccgcaggct ctggactggt tcggtgattt gcacacccct cgtgcctgcg cctttctcta
      721 tcgatggcct tccctgcaac aactgaaaac tgcgaccagc agttcggttc ggaagtttta
      781 ccaaaaccaa ggttatcgtg gagaagacaa acttaaacag ctgatccaag acatccagca
      841 ggctctaccg ctgactggag atgaagctgt ccttctggcc tctacgatga tggtccaggc
      901 gctggtcaaa cagattccct cgttgaccga gtccatcgag gaatatgacc gcaagatcgc
      961 cgcgctgttt aaatctcatg acgattcgac tctattcggc agtttccctg gcgcggggcc
     1021 cacactcgcc ccacgtctat tagcggtttt cggttccgac cgctctcgtt ttgagtatgc
     1081 ggctgaagtg caacagctct ccggtatcgc tccggttacc gaaaaaagcg gcaaggcctg
     1141 ctgggttcac tggcgtttcg cctgttcgaa gttcttgcgg caaagccttc acgaattcgc
     1201 gggtcaatcc attctgaaat ccgcatgggc tcgtgcctac taccagcagc agcgagctcg
     1261 cggcagctct catcaagccg ctctgcgagc tcttgccttc aagtggatcc gcatcatctt
     1321 caggtgctgg aaagacagaa ccccctacga cgaggctaag tactgccaga gtcttcaatt
     1381 gcgaggctct cgtttggctt caactctcaa aacc
//
LOCUS       DATCGC010000331         1059 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_171249, whole genome shotgun sequence.
ACCESSION   DATCGC010000331 DATCGC010000000
VERSION     DATCGC010000331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1059)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1059)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1059
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171249"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1059)
                     /locus_tag="VIJ87_03205"
     CDS             complement(<1..>1059)
                     /locus_tag="VIJ87_03205"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5443479.1"
                     /translation="KNNLTPIQSIAVMPFVNESGNADVDYLSDGMTETLISSLSQLPN
                     LNVKARSSVFRYKGKDTNPQTIGRELNVQAVLNGRFAQRGDQLSLTLELVDAQTENVL
                     WSEQYNRPQADLVKLQNDIAHDVSSKLRTKLSGADAQKLAKTYTSNPDAYRLYLQGRF
                     YWGKREEKDLKTAIDYFNQAIALDSNYALAYAGLADSYVLLASFNFMPPTDAIPKARG
                     FALKAQSLDESLAEPHTTLGLALFQFDYDFVGAEREYKRAIELNPGYATAHQWYGELL
                     TCSGRFDEAAAELRRALELEPLSLPINWDYGRSLYHARKFDESLAQHKKTIDLDPGFA
                     RARRTLVEVYRVKKDYANA"
BASE COUNT          250 a          286 c          259 g          264 t
ORIGIN      
        1 gcattcgcat agtccttctt tacccgatag acctccacca acgttcgccg agcgcgcgca
       61 aaaccaggat ccagatcgat cgtcttctta tgttgcgcaa gcgactcgtc aaactttcgt
      121 gcgtggtaaa gacttctgcc gtagtcccaa ttgatcggaa gcgaaagcgg ctccaactcc
      181 agggcgcgcc gaagttccgc tgccgcctca tcaaacctgc ccgaacacgt taacaactcg
      241 ccgtaccatt gatgtgcagt ggcatagccc gggttcaact cgatcgcgcg tttgtattcg
      301 cgttcagcgc caacaaaatc ataatcaaac tgaaagagcg ccaagcccag agtcgtgtgc
      361 ggttcagcca ggctctcatc gagggactgc gctttaagag caaagccacg cgcctttggg
      421 atcgcatcgg taggcggcat gaaattgaag ctggccaaca gaacgtacga gtcagcgagg
      481 cctgcatatg ccagcgcgta gttggaatcg agagcaatgg cttgattgaa ataatcaatt
      541 gctgtcttaa gatctttctc ttcgcgtttg ccccaataga accgaccttg cagataaagt
      601 cgatacgcgt ccgggtttga cgtgtaggtc tttgccagct tctgtgcgtc tgcgcctgag
      661 agtttagttc ttagtttgct cgacacgtcg tgagcgatgt cgttttgcag ttttaccagg
      721 tcggcttgag gacggttgta ctgctcactc caaagcacat tctcagtctg cgcatcaacc
      781 aactccaacg ttagagataa ctgatcacca cgctgagcaa aacgtccgtt caagaccgcc
      841 tggacgttca attccctacc aatagtttgc gggttggtat ctttaccttt gtaacgaaac
      901 accgaggatc tggctttaac attcagattg gggagttgcg acaagctgct gattaacgtt
      961 tccgtcatcc catccgagag atagtcaacg tccgcatttc cgctctcgtt aacgaacggc
     1021 atcactgcaa tcgactgaat aggcgtaagg ttgtttttc
//
LOCUS       DATCGC010000332         2066 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_437630, whole genome shotgun sequence.
ACCESSION   DATCGC010000332 DATCGC010000000
VERSION     DATCGC010000332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2066)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2066)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2066
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_437630"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            190..1044
                     /locus_tag="VIJ87_03210"
     CDS             190..1044
                     /locus_tag="VIJ87_03210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443480.1"
                     /translation="MSPDSTTRSTAVMLLTVALCTFNACAALQPTDANGPRSNLPPYP
                     VVVNEPAGSESFTHEWQKLSQRYGLPQDTPAVFDPLLGTLHGLPPNLGSAIFLPKVGG
                     SSVQTEEETRESLRRFIVDWQELIGAEPSQLSLVDRSDETNGTKLARFEQRPFRYPLR
                     GDFGKLDIRFQSDRRVLSIASTCLPNTDRLQAALANLTATVTSDKALTLVKDHPITVT
                     STDGTQRSFSLPATASLEAHQLVAYAITSKDQQAVELHLAWEIDVANGPIKTIYLDAI
                     SEQVIAVM"
     gene            1125..1859
                     /locus_tag="VIJ87_03215"
     CDS             1125..1859
                     /locus_tag="VIJ87_03215"
                     /inference="COORDINATES: protein motif:HMM:NF014045.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HEY5443481.1"
                     /translation="MNNNYDPTNNVSWQLGHRGRVAVFIDGNNLFHAARFHNIDIDYN
                     KLLRVLLGDGRLLRAFFYTGVDVGAERQQGFLLWMRRNGFRVIQKELKTFYDGTRKAN
                     LDVEIAVDMLSLAGRYDTAVLVSGDEDFVYAVNAVAYKGCRVEIAGFRSNTAPKLIDV
                     ADYFIDLGEIADKVRKEVNHGIRYDERDLHDHVPPEYLQAQMQMQEAPSEVFQAAMRV
                     VIEAEMEQEDAEFQAASEFIRVTDDH"
     gene            1865..>2066
                     /locus_tag="VIJ87_03220"
     CDS             1865..>2066
                     /locus_tag="VIJ87_03220"
                     /inference="COORDINATES: protein motif:HMM:NF021486.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2203 family protein"
                     /protein_id="HEY5443482.1"
                     /translation="MKIFTLEEANALLPRVKLIVANIQKCHKTLGKYRTEAKKASEAA
                     EHGGGGIKNGVHYATLVTSLTDE"
BASE COUNT          543 a          509 c          505 g          509 t
ORIGIN      
        1 ctcacacgtg ttggtggatt tgcccgtaaa cactcatcgc agcgtatcat ctgatcaggt
       61 gtgaaaccct gaggctctcg tggcagcact ggcccatcta gcggcaaatg aatggtttcg
      121 ttatctttag gcaatagctc ctccaactgt ttgaattata cgacggggcg aaaactctcg
      181 gggaacataa tgagtcctga ttcaacaaca agatcgacgg cagtgatgct actcacggtt
      241 gccctctgca catttaacgc ttgcgcagcc cttcaaccta cagatgcgaa tgggccgcgc
      301 tcaaacttac cgccttatcc ggtcgtggtt aatgaaccag ctggctccga aagcttcaca
      361 catgagtggc aaaagctctc tcaaagatac ggcctgccgc aagatactcc tgccgtgttt
      421 gatccattac tcggaacact ccacgggctt ccacctaact tgggtagcgc tatctttcta
      481 cctaaagttg gcggtagttc agttcagacc gaagaagaga cccgcgagtc gctgaggcgc
      541 ttcatagttg attggcaaga gttaattggc gcagagccat cgcaactatc actggttgac
      601 agatcggatg agacaaatgg aacaaagtta gctcgcttcg agcagcgacc ttttcgttat
      661 ccgctgcgag gagattttgg gaagctggat attcgttttc aatccgaccg gagagttctc
      721 agtatcgcta gtacttgtct tcccaatacg gatcgactcc aggccgcact tgccaatttg
      781 acggccacag ttacttcgga taaagcacta acactcgtta aagaccaccc gataacggtc
      841 acttcgacag atggaacgca acgttcgttc tcactgccgg cgaccgccag tcttgaggct
      901 catcagctag tcgcatatgc cattacgtcg aaagatcagc aagcggtgga gctccacctg
      961 gcttgggaaa tagatgtcgc taatggccct attaagacta tctatctcga cgctatttca
     1021 gaacaggtca ttgcggttat gtagttttcc tttatgcttg accaacttat ggcaaaacca
     1081 gcattctaga ttattagatc agtgggctac tctttggagt atctatgaac aacaattacg
     1141 acccgaccaa taatgtttcc tggcaattag gtcatcgcgg gagagtcgca gtttttatcg
     1201 atgggaataa tctttttcac gccgcacgtt tccacaatat cgatatcgat tacaacaaac
     1261 tgctgcgagt actactgggt gacggacgat tgcttagagc ttttttctac accggtgttg
     1321 atgttggagc agaacgccaa caaggctttc tcttgtggat gcgtcggaat ggctttcgtg
     1381 tgattcaaaa agaactgaag acgttttatg acggcacaag gaaagccaat ctcgacgttg
     1441 agatagcagt cgacatgctt tcgctagccg gacgctacga cacagcggtg ctggtgtctg
     1501 gcgacgaaga ctttgtctac gccgtgaacg cagtagcgta caaaggttgt cgtgttgaaa
     1561 ttgcaggttt cagatcaaac accgctccca agctgataga tgtggctgac tacttcattg
     1621 accttggcga gattgctgat aaggtccgga aagaggttaa tcacggaatt cgttacgacg
     1681 agcgcgacct ccacgatcac gttcctccag agtatcttca agctcaaatg cagatgcagg
     1741 aagctccttc tgaagttttc caagctgcga tgcgagtcgt gatagaagcc gaaatggaac
     1801 aggaagacgc ggagtttcag gcagcgagcg agttcattcg cgtcactgac gatcattgat
     1861 tgcgatgaaa atcttcactc ttgaagaggc caacgctctt ttaccgaggg tgaaactaat
     1921 cgtggcaaac attcagaaat gccacaaaac cctcggtaaa tatcgaactg aagcgaaaaa
     1981 agcatccgaa gcagccgagc atggcggcgg cggaatcaag aacggtgttc actacgcaac
     2041 cctggttacc tcactaaccg atgaaa
//
LOCUS       DATCGC010000333         1035 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_71379, whole genome shotgun sequence.
ACCESSION   DATCGC010000333 DATCGC010000000
VERSION     DATCGC010000333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1035
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_71379"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..795
                     /locus_tag="VIJ87_03225"
     CDS             <1..795
                     /locus_tag="VIJ87_03225"
                     /inference="COORDINATES: protein motif:HMM:NF013046.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone deacetylase"
                     /protein_id="HEY5443483.1"
                     /translation="EDVRRVHTEDYVSRLCDGTLTDKEIRRLGLPWSESLVTRSFYAV
                     GGTIAAALQSLNDGYSSNLAGGTHHSFPDRGEGFCVLNDVAIAIRTMRSRGLIQRAAI
                     VDCDVHQGNGTATIFAEDTETFTFSMHGANNYPLFKAHSSLDIELPDHTSDAEYLAIL
                     STNLEHVFEHQPEIVFYLAGADPFGGDKLGKLSLTIDGLRSRDTAVLRACYEREVPVT
                     TVMSGGYGKQISDTVEIHCNTIRAVKDVFESHVAAPGTQLERLQTA"
     gene            792..>1035
                     /locus_tag="VIJ87_03230"
     CDS             792..>1035
                     /locus_tag="VIJ87_03230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443484.1"
                     /translation="MRRILKWVFRIALGIVLGVVVYEGVLFLRVYWLRDHNPSSTSLI
                     DTRTTEAQDKSQEPRREQTWVALDKISPNLQRAVLAG"
BASE COUNT          248 a          275 c          270 g          242 t
ORIGIN      
        1 gaggacgttc gacgagtcca tacggaagac tacgtgtcga ggctctgcga tggaactctt
       61 accgacaagg aaattcgacg tcttggattg ccatggtctg aatctctcgt aactcggtcg
      121 ttctatgcag tcggagggac gattgctgcc gctctgcaat cactgaacga tggctacagt
      181 tcgaatctcg ccggcggaac tcaccactca tttccagatc gcggtgaagg cttttgcgta
      241 ttgaatgacg tcgcaattgc aattcgaaca atgcgttcaa gagggctaat tcaacgagcc
      301 gcgatcgttg attgcgacgt acaccagggc aacggcacgg caacaatctt cgccgaagac
      361 accgagacct ttactttctc gatgcacggc gccaacaact atcctctgtt caaagcccat
      421 tcgagccttg atattgagct gccagaccat acgtctgacg cagagtacct ggcgattctc
      481 tcaacgaatc ttgaacatgt tttcgagcac cagcctgaaa tcgtctttta cctcgccgga
      541 gcagatccgt ttggcggaga caaactaggc aaactctctt tgacaattga tggcttgcgt
      601 tcacgtgaca cagcggtctt gcgtgcgtgt tatgaacgcg aggttccagt gactacagtg
      661 atgtcaggcg ggtacggcaa acaaatcagc gacacggtcg agatccattg caatacgatt
      721 cgcgcagtga aggatgtctt cgaatctcac gtcgcagcac ccggaacaca gctggagaga
      781 ttacaaaccg catgaggcgc attcttaagt gggtattcag gattgcactg gggatcgtgc
      841 tcggcgttgt tgtgtacgag ggtgtcctct tccttcgcgt ctactggctt cgcgatcata
      901 atccttcatc gacttcgtta atcgacactc gtaccactga agcccaggac aaaagtcagg
      961 agccgagacg cgaacaaaca tgggtggcgc tcgacaagat ctcgccaaac ctccagcgtg
     1021 ctgttttggc cggcg
//
LOCUS       DATCGC010000334         1161 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_204372, whole genome shotgun sequence.
ACCESSION   DATCGC010000334 DATCGC010000000
VERSION     DATCGC010000334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1161)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1161)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1161
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_204372"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(173..>1161)
                     /locus_tag="VIJ87_03235"
     CDS             complement(173..>1161)
                     /locus_tag="VIJ87_03235"
                     /inference="COORDINATES: protein motif:HMM:NF033564.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ISAs1 family transposase"
                     /protein_id="HEY5443485.1"
                     /translation="WVALRKELLKQALNFERDTVPHPTTYSRILGRAVDVCELQHRVS
                     LFLLSAADAGESAEVNFDGKAMRGTIAKGQTQGLHLLAAYLPDEGIVLMQIEVGSKEN
                     EISAAPRLLKSIDVKGKVVTGDAMFAQRELSRLVVEAGADYLWTVKDNQASLRSDISA
                     LFEIEEGKTKLYIMKNDLRVAETIDKEHGRLEKRRITTSSMLCGRVDWPGLKQVFKIE
                     REVEELSTGKKRNETSYGVTSLTSKKASAERLLEIVRKHWMIENGLHYRRDWTLREDY
                     CRLRVGEAAQAMSVINNLVVGLVLREGFKYLPDARRKYSAQPLEGLKLILRR"
BASE COUNT          257 a          328 c          228 g          348 t
ORIGIN      
        1 atagaatctt tccaattcat ccggtcaatt agtaccgctg gatattacct ttacaacgcg
       61 cttcttaaat tatgccgggc tttaactaca attcagggac tgatgatatt ttcaaatata
      121 gcgccctgtc aagcgttttc ctgcgacact cacggctgta gcaaagtcgg attcatcggc
      181 gcaaaatgag ctttagccct tcaagtggct gagcactata ctttctcctc gcatccggca
      241 ggtatttgaa tccttctctc agcacaagcc ctactaccag gttgttgatc actgacattg
      301 cctgcgccgc ttctcctact ctcaatctgc aatagtcctc ccgcagcgtc cagtctcttc
      361 tatagtgcag cccgttttct atcatccaat gctttctgac tatctccagc aacctctcag
      421 ccgatgcctt cttgctagtc aagcttgtta ccccgtagct tgtctcgttg cgcttcttgc
      481 ctgtcgatag ttcttctact tctcgctcta ttttgaagac ttgcttaagc cccggccaat
      541 caactcgtcc acataacata ctgcttgttg tgattcgtcg cttctcaagg cggccatgct
      601 ctttatctat cgtctcagca accctcaaat cattcttcat tatgtagagc ttggttttgc
      661 cttcctctat ttcaaacagc gcagatatgt ctgagcgcag gctcgcttga ttatctttaa
      721 ctgtccataa gtagtctgcg cctgcctcta ctaccaaccg tgataattcc ctttgagcga
      781 acatcgcgtc accagtcacg actttcccct ttacatctat agatttaagc aatcgcgggg
      841 cggcgcttat ctcgttctct ttagatccca cttcaatctg catcagcacg attccttcat
      901 ccggcaggta ggcggcaagt aaatgtaagc cttgagtctg ccccttagcg atggtgcctc
      961 tcatagcctt gccgtcaaaa ttaacctcgg cagattctcc tgcatcagca gcagaaagca
     1021 agaagaggct gactctgtgt tgaagctcac aaacgtcaac ggctcggcca agtattcgag
     1081 agtaagtcgt agggtgagga actgtgtcgc gctcaaagtt gagagcctgt ttgagaagct
     1141 cttttcttag tgcaacccac t
//
LOCUS       DATCGC010000335         1584 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_6611, whole genome shotgun sequence.
ACCESSION   DATCGC010000335 DATCGC010000000
VERSION     DATCGC010000335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1584
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6611"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(115..1221)
                     /locus_tag="VIJ87_03240"
     CDS             complement(115..1221)
                     /locus_tag="VIJ87_03240"
                     /inference="COORDINATES: protein motif:HMM:NF019113.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 88 protein"
                     /protein_id="HEY5443486.1"
                     /translation="MKTHWLRGLQLVGIKLILLAAAISTYAQVVPPTKPLSKQDIRTA
                     MSRVFAWQVANPVDLNLKNNNLWARAAFYTGIMSAYRATGDKRYLEQAVKWASERHWK
                     LGDRPRHADDQALGQTYLELYLLEKDPEKIASTKATLDAMIADPRPGREDWWWCDALF
                     MAPPVLARLYTATKDEKYLKFLDTMWWDTTDFLFDPTENLYYRDKNYIGKPNAHGKKV
                     FWARGNGWVMAGTVRVLQHLPKNDPSRKRYIELLQKMAASVSKVQGADGLWRPSLLDP
                     LEAPVPETSSSGFFCYALLWGINNGYLDRKTYEPAVKKAWAGLNTAVHEDGKLGWVQP
                     IGAAPASVNFDMNQEYGSGAFLLAGSELLKLKGL"
BASE COUNT          375 a          430 c          386 g          393 t
ORIGIN      
        1 cggacaagct gggaaggtcc gtggtgacat ctacttcagc aacttactca accacagtaa
       61 acacagacgg caccgaggta acacagagat tacagattgc gacactacct catttcacaa
      121 tccctttaac ttcaacagct cactccctgc cagcaggaac gcaccagatc cgtattcctg
      181 attcatgtcg aagttgacgc tggcaggcgc ggcaccaatc ggttgcaccc aacctaattt
      241 gccgtcttca tgaactgcgg tgttgagtcc tgcccaggct ttcttcaccg ctggctcata
      301 agtcttacgg tcgaggtaac cgttattgat tccccaaagg agcgcataac aaaagaatcc
      361 cgaactacta gtctccggca ctggcgcttc tagaggatca aggagacttg gtcgccacag
      421 tccgtcggca ccttgaactt tgctaactga tgcagccatc ttttgaagca attcgatata
      481 acgcttacgc gagggatcgt tcttaggtag gtgttgaagc acgcgtacgg tgccagccat
      541 cacccagcca ttaccacgcg cccaaaaaac tttcttacca tgggcattcg gctttccgat
      601 gtagttcttg tcgcgatagt agagattctc ggttgggtca aaaagaaagt cagtagtgtc
      661 ccaccacatt gtgtccagga acttcaaata cttttcgtct ttggtcgcag tgtagagtcg
      721 ggccaatacc ggcggcgcca tgaacagcgc atcacaccac caccaatcct cacggccggg
      781 tcttggatca gcgatcatcg catccagcgt agccttcgtg ctggcaatct tctccggatc
      841 cttttccaat aagtaaagtt caagatatgt ctgaccgagg gcctgatcat ccgcatgtct
      901 gggtctgtct ccaagtttcc aatgtcgttc gctggcccac ttcacggcct gttccaggta
      961 ccgcttatca ccggttgccc gataggccga cattattcca gtgtagaaag ccgcacgcgc
     1021 ccaaaggttg ttgttcttca gattgaggtc gacgggatta gcaacttgcc atgcaaacac
     1081 tcgcgacatc gctgtgcgaa tgtcttgttt ggagagaggt ttcgtgggag gaacaacttg
     1141 cgcgtacgtt gagattgcag cggcaagcaa aatcagttta atcccgacta attgtagacc
     1201 acggagccag tgtgttttca tgaacgcatt ctatcctcag cttgtttagg ttcaaatcaa
     1261 taaatgttgg cacgatttca gcaataccct ttagtgacgc ctttcgaact aacgagcgcg
     1321 ctcttctggg accgcaggcg tcctcgcctg cttgccacca ctcgagcgcc ttagtgtgag
     1381 agggcaggcg gggacgcctg cggtcccaga agagcattcg ctattaattg ttgcgggtta
     1441 ctaaagggta tcgggtgttt ctcgaccaac tcctaaggca tcggcgacac gattgatgta
     1501 gttgaaccac gatgcaatca gagtgatctg cagaatacct ttgtcgtcaa agccgacttc
     1561 acgtagccgc gcatgatcct ttgg
//
LOCUS       DATCGC010000336         1213 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_104515, whole genome shotgun sequence.
ACCESSION   DATCGC010000336 DATCGC010000000
VERSION     DATCGC010000336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1213)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1213)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1213
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104515"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..774
                     /gene="corA"
                     /locus_tag="VIJ87_03245"
     CDS             <1..774
                     /gene="corA"
                     /locus_tag="VIJ87_03245"
                     /inference="COORDINATES: protein motif:HMM:TIGR00383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015087 - cobalt ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015095 - magnesium ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006824 - cobalt ion transport [Evidence
                     IEA];
                     GO_process: GO:0015693 - magnesium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HEY5443487.1"
                     /translation="PQHSKVDDYGNHVFMVVHGVRYDAEHDEFKTHELNIFLGASYLV
                     TFHTYHSRSIDAAKENIRRHPAVMARGMDFVLHQIVDRVIDNYFPKLEIIESKIDELE
                     TDLIADVRPELLTRIFELRRTVSHLKRIATQEREMLIQISRGDFPFIGEKAQVYFKDV
                     YDHLFRIVEGADTHRDTLNVMIQVYVSMVSNQLNNTMRVLTLIATVMLPLTVITGIYG
                     MNFDFMPELHWKFGYPLILLVMLVVSVLMITYFRRRNWL"
BASE COUNT          288 a          301 c          316 g          308 t
ORIGIN      
        1 ccgcagcact ccaaggtgga tgattacggc aaccacgtgt tcatggtcgt gcatggtgtt
       61 cgctacgatg ccgagcacga cgaattcaag acacatgaat tgaatatctt tcttggagca
      121 tcgtatctcg tcacattcca cacgtatcac tccaggagca ttgatgccgc aaaggaaaac
      181 atccggcgcc atccggccgt gatggctcgt ggaatggact tcgtgctgca tcagatcgtg
      241 gaccgggtca tcgacaacta cttcccgaag ctggaaatca tcgagagcaa gattgacgaa
      301 cttgaaaccg acctcattgc cgacgtccgt ccggaactcc tgacccggat tttcgaactc
      361 cggcgcaccg tctcgcacct gaagcgcatc gcgacgcagg agcgcgaaat gctgatccag
      421 atcagccggg gtgactttcc gttcatcggg gagaaggctc aggtctattt caaggatgtc
      481 tacgatcact tgtttcgcat tgtggaaggg gcagacaccc atcgggacac gctgaacgtc
      541 atgattcagg tgtacgtttc tatggtttca aaccagctca acaacacgat gcgcgtactg
      601 acgttgatcg caacggtgat gctcccgctg acagtgatca ccggcatcta cggaatgaac
      661 ttcgatttca tgcccgagtt gcattggaag ttcggctatc cccttattct cctcgtgatg
      721 cttgttgtga gcgttctcat gatcacttat tttcgacgga ggaattggct ttagcctgaa
      781 ttctgtatgc gtatttcaaa ttttggaatt ttttgaagca gtcgtgtgtt gaagttactg
      841 aaatcaaacg tcgaggtaat tggtctgtat cgtgcttaaa agcaagcgac tcttgtttcg
      901 aagcggcaac ttttccgaac tacatcttgc gttagcgagg tggaggggga gagaaggggg
      961 gagccgcttc gaacagtcgc tgaacaaatg ccggcgcttt cggggggaag cgccggcatt
     1021 ttttttcctc aaacctccga caaagtgaca agattctcag tcgctttaac ccgcacgttt
     1081 tgctaagcta aatcgacttt cgaagttctt atacttcata ggaggcagta tgagtacgac
     1141 tgtgaatggc cccggttctt cattggcggt gtccgagaag ggcgcagagc acaaaatacc
     1201 ctatcccgga att
//
LOCUS       DATCGC010000337         1088 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_171335, whole genome shotgun sequence.
ACCESSION   DATCGC010000337 DATCGC010000000
VERSION     DATCGC010000337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1088)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1088)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1088
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171335"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..910
                     /locus_tag="VIJ87_03250"
     CDS             <1..910
                     /locus_tag="VIJ87_03250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443488.1"
                     /translation="VCLMLVLLSISSSTAQRRSRSPKHETTRGSSASIPLEWAGEIIT
                     GAPCYVEKYQNSLVSEVVRDWRAEAIDLDQDKKPELIVYKRDKCSCLKNTDLCSVSIY
                     NFYGQRLMESRNLFSGLFMTPEISLVPNTTAVSGYFNLELFDKRQRSAQPVAELVYDW
                     HGSYGIKKMLSHSDAFRIVSSVEINLIFDGREEYESNGERLVRYSFSVSDLSASNTGF
                     TSEPLTVSPALPCGPSNSSRTEVDIYDQYGNRLNRLCDVINSDLTDQLWFDLEKDRTP
                     PSWVFFELTDRQTNTVYRSHLVETVQ"
BASE COUNT          307 a          230 c          266 g          285 t
ORIGIN      
        1 cgtgtgttta atgttagtac tgcttagtat ttcaagcagt actgctcaac gacggagtag
       61 aagcccaaag cacgaaacga ccagaggatc ttccgccagc attccgcttg agtgggcagg
      121 cgagattatt actggagcac cttgctatgt agaaaagtat cagaattctc tggtgtcaga
      181 ggtagttcga gactggcgtg ctgaggcaat tgatctagat caggataaga agccggagtt
      241 gatagtttac aagagagata agtgtagctg cttgaaaaat acagatcttt gcagtgtctc
      301 gatctacaac ttttatggac aaagacttat ggagtcaaga aacctattta gcggattgtt
      361 catgacaccc gagattagtc ttgttccaaa cacaacagct gtttcagggt atttcaattt
      421 agaattattt gataagcgtc agcgctctgc ccaacctgtt gcggaacttg tctatgactg
      481 gcacgggtct tatgggatca aaaaaatgct ttctcactcc gacgccttta ggatagtgtc
      541 aagcgttgaa ataaatctca tattcgacgg gcgagaggag tacgaatcaa atggcgagcg
      601 gctcgtgcgt tacagtttta gtgtttcgga tctttctgct tcaaacactg gcttcacgtc
      661 tgagccattg accgtctcgc cagcactgcc ctgtggtcca agcaattcct cacggactga
      721 ggtcgacatt tacgatcagt acggaaatcg gctcaatcgg ctatgtgatg tgatcaacag
      781 cgacttgacc gatcagttat ggtttgattt ggaaaaagat cgcacccctc cgagttgggt
      841 attttttgaa ctaactgata ggcaaacaaa taccgtctat cgatctcatt tagttgaaac
      901 ggttcaatag taagcgaggc aagcgagttg ttgtccggaa ccgcaagacg cagagaaggt
      961 agcacagaga aaagcatcaa aggatctcga gatgagcgag gcagccaagc ggatcttatt
     1021 aatcagcaat tcaactctgc acggcagcag ttatctcgat catgctgaaa acgaaatccg
     1081 cgactttc
//
LOCUS       DATCGC010000338         1192 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_404067, whole genome shotgun sequence.
ACCESSION   DATCGC010000338 DATCGC010000000
VERSION     DATCGC010000338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1192
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_404067"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            116..451
                     /locus_tag="VIJ87_03255"
     CDS             116..451
                     /locus_tag="VIJ87_03255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443489.1"
                     /translation="MLLSDVESEWRSFDEVKRSEIKKHAIAAGTDSNTKDSLYICLGT
                     WLMAGIPGNCRIAETTPGKLYKNLCQYPFASGETVVGTKYQVLLTNTGYKWLKARDVS
                     RAEIKSGAA"
     gene            475..612
                     /locus_tag="VIJ87_03260"
                     /pseudo
     CDS             475..612
                     /locus_tag="VIJ87_03260"
                     /inference="COORDINATES: protein motif:HMM:NF023329.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DM9 repeat-containing protein"
     gene            650..>1192
                     /locus_tag="VIJ87_03265"
     CDS             650..>1192
                     /locus_tag="VIJ87_03265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443490.1"
                     /translation="MDELEQISTRYLLGELSEKEQAAFEERYFRDPQVFNQVLQVESE
                     LVDAYARGRLATETRERFENSYLKHQARRQRVEFAKALTTRIDENEDSRSRVAQTARS
                     TSRVSWWQSLLSFGSERPKLRFSMALVAVLIVLSGAWIVVNNLRRQGQPTQTQAKQEN
                     QEQRQQDQQTPQQTPERQNQE"
BASE COUNT          348 a          261 c          323 g          260 t
ORIGIN      
        1 atgggacgat gatgtatatc tgcagagttt ctggatttgt ttccggcaaa acctacaata
       61 acgcttgcca ttactcggcc gccggacagg agaatgtaat aacgtaaggt acgaagtgct
      121 gctgtcagat gtcgaatctg agtggagatc atttgacgaa gtgaagcgca gtgaaataaa
      181 aaagcacgcg attgctgctg gaacggattc aaacaccaaa gacagcctgt acatttgcct
      241 gggcacatgg ttgatggctg gcatcccagg aaactgtagg attgcagaaa caactccggg
      301 caaactgtac aagaatctat gtcaatatcc gttcgccagc ggagagactg tagtgggcac
      361 caagtatcag gtgctgctga caaacacagg atataagtgg ttaaaagcgc gcgatgtatc
      421 gcgtgctgaa atcaaaagcg gggcggcgta gatgagggga attccaaaaa acctcctatc
      481 tatatttgcc ggaagaagat gaatgatggc gtgcatccag gaaaattttc atatagcaat
      541 aacctctatt acatcccctg gggtggtaag gaatggcact acgcagatgg ctttgaaatt
      601 cttttgctgt aacggtatta gcaggtcgtc aacatagtgg ctctctcaaa tggatgaact
      661 ggaacaaatc tcaacgcgct acctgctcgg agaattgtcc gaaaaggagc aagctgcgtt
      721 tgaagagaga tatttccgcg acccgcaggt ttttaatcaa gtgcttcagg ttgaaagtga
      781 gttggtcgat gcttacgcac gcggccgact agcaaccgag acgcgcgagc ggttcgagaa
      841 ctcttacctg aagcatcaag cccgacgaca gcgtgtcgag ttcgccaaag ctttaactac
      901 caggattgat gagaatgaag attcaaggag tcgagtcgcg caaacggcgc gatcaacttc
      961 gcgagtatcg tggtggcaga gtttgctctc gtttggaagc gagagaccga agttgcgatt
     1021 ctcgatggcg ttagtagccg tgttaatcgt gctttccggc gcctggattg tcgtaaacaa
     1081 cttgcggcga caagggcagc caacgcaaac tcaagctaaa caggagaatc aggagcagcg
     1141 tcagcaagat caacagacgc cgcaacaaac tccagagcgc caaaatcaag aa
//
LOCUS       DATCGC010000339         1810 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_470635, whole genome shotgun sequence.
ACCESSION   DATCGC010000339 DATCGC010000000
VERSION     DATCGC010000339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1810)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1810)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1810
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_470635"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1810)
                     /locus_tag="VIJ87_03270"
     rRNA            complement(<1..>1810)
                     /locus_tag="VIJ87_03270"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          390 a          554 c          407 g          459 t
ORIGIN      
        1 acccttggga cctgctacag ccccaggatg tgatgagccg acatcgaggt gccaaactcc
       61 tccgtcgatg tggactcttg ggaggaataa gcctgttatc cccggagtac cttttatccg
      121 ttgagcgatg gcccttccat acagaaccac cggatcacta tgacctgctt tcgcacctgt
      181 tcgacatgta cgtctcacag ttaagcacgc ttgtgccatt gcactctgtg cgcgatgacc
      241 gaccgcgctg agcgtacctt tgcactcctc cgttactctt tgggaggaga ccgccccagt
      301 caaactaccc accatacatt gttcccagcc cagataatgg gccgaggtta gaactccgaa
      361 attgtcaggg tggtatttca acgtcccctc cacgaaagct agcgcctccg cttcaaaggg
      421 tcccacctat cctacacaaa caagttcaaa gttcagtgta aagctgtagt aaaggttcac
      481 ggggtctttc cgtctttccg cagctacgcc gcatcttcac agcgatttca acttcactga
      541 gtctcgggtc gagacagtgg ggccagcgtt acgcttttcg tgcaggtcgg aacttacccg
      601 acaaggaatt tcgctacctt aggaccgtta tagttacggc cgccgtttac cggggcttcg
      661 atcaggagct tcgccttgcg gctgacccca tcaattaacc ttccggcacc gggcaagcgt
      721 cagaccctat acatccactt tcgtgttcgc agagtcctgt gtttttggta aacagtcgca
      781 gcccccgatt tcgtgcctcc tctaactgct tcgtggagca agtccactaa caaccaaagg
      841 aataccttct cccgaagtta cggtatcaat ttgcagagtt ccttaacccg agttctctca
      901 agcgcctaag cagattgtct gctcacccac cagtgtcggt ttacggtacg gtcagttatc
      961 acctgaagct tagagacttt tcctggaagc gtggcatcag ctaactcggg aaccgaagtt
     1021 ccctcgtgct cggatctctg gataaatgcc ggcggatttt ccaaccgaca atccctacga
     1081 ccttgaacgg tgcatgcacc gcctaaccta gccttctccg tcatcccatc gcagtgatac
     1141 ctggtgcagg aatattgacc tgctttccat cgactacgcc tttcggcctc gccttaggaa
     1201 ccgactcacc ctgcgccgat taacgtggcg caggaaacct tgggttttcg gcgaacgggt
     1261 ttttcacccg ttttaacgtt actcatgtca gcattcgcac ttctcatacc tccagcaaac
     1321 ctcacagttc accttcgcag gcttagagaa cgctccccta ccgcgtacgc gcccgaaggc
     1381 acgcacaccc atagcttcgg tactcggctt gagccccgtt aaatcttccg cgcgagccga
     1441 ctagaccagt gagctattac gctttcttta aaggatggct gcttctaagc caacctcctg
     1501 gctgtctatg ccttctcaca tcgtttacca cttagccgaa atttggggac cttagctgat
     1561 ggtctgggtt atttccctct tcacgatgga cgttagcacc caccgtgtgt ctcccgagta
     1621 ttacttctgg gtattcggag tttgcatgga gttggtagac cgagatggtc cccttctcca
     1681 aacagtgctc taccccccag agtattgact cgaggcacta cctaaatagc tttcggggag
     1741 aaccagctat cgccagcctt gattagcctt tcactcctat ccacacatca tcgacgcact
     1801 attgcaacag
//
LOCUS       DATCGC010000340         1000 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_6723, whole genome shotgun sequence.
ACCESSION   DATCGC010000340 DATCGC010000000
VERSION     DATCGC010000340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1000
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6723"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            438..>1000
                     /locus_tag="VIJ87_03275"
     CDS             438..>1000
                     /locus_tag="VIJ87_03275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443491.1"
                     /translation="MKRIITAVCLVLGLAASAWAQGLRYPLIDWRFVNGGNLPQTQAV
                     YMNEDTISIKVESGDRLSLGPNDMEIVLTSNVSWKKELTALNFCSGRGTTISTHDSNR
                     GPVSMRLHRSNCADTVIMRKEKLFQGMVDVYHFDPFRFWPLWAGKIITINWYQDLVWG
                     SFPPVCNFPCVPTNTVSSAGVLYDTDG"
BASE COUNT          249 a          255 c          250 g          246 t
ORIGIN      
        1 ccgctttggc aaaccgatcg gcgtttcgac cattctgttg gttgacagta gcggcaacca
       61 aatgggcagc gcctctgaat ctcatttgac tctgcaatag agtccgatcg catcaagttt
      121 tcacctcacc gccaaaacac aaataatcta cgagaccagc gtattgatcg atacttggtg
      181 ttgcggcagt gtgtctcaac gcggagcgtg cggggtatcg cgttgaacgc agagcattcg
      241 cgagatgaag gcgatacctt caactcgcct cttgaacctt aagaactaca cttcctgact
      301 aaataagttt attcctcggc tcttccaacg ctttcgatgt gctcaaagga ttcacgtcca
      361 tcctaaagta gggaacgagc cgaaatcatg agtgatcttt tcttcaacgt cgccactatt
      421 ccgtggagga cttaggtatg aagagaataa tcacagcagt atgtttggtt ttggggcttg
      481 cagcgagtgc gtgggcacag ggcctgcgat atccgctaat cgattggcgg ttcgttaacg
      541 gcggaaacct tccacaaact caggctgtct acatgaacga agacacgatc tcgataaaag
      601 ttgagtccgg cgaccgcctc agcctcgggc cgaacgatat ggaaatcgtg cttacttcca
      661 atgttagttg gaaaaaagag ctaacagccc ttaatttctg cagcggcaga ggcacaacga
      721 tctcgaccca tgactcaaat cgagggccgg ttagcatgcg tctccaccgg agcaactgcg
      781 ccgatacggt catcatgcga aaagaaaaac tctttcaggg catggtcgac gtataccact
      841 tcgacccgtt tcggttttgg cctttgtggg ccggaaagat catcaccatc aactggtacc
      901 aggatctagt ttggggtagc tttcctccgg tctgtaactt cccgtgtgtt cctacgaaca
      961 cggtttccag cgcgggagtt ttgtacgaca ctgatggaaa
//
LOCUS       DATCGC010000341         1108 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_337545, whole genome shotgun sequence.
ACCESSION   DATCGC010000341 DATCGC010000000
VERSION     DATCGC010000341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1108)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1108
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_337545"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..615)
                     /locus_tag="VIJ87_03280"
     CDS             complement(<1..615)
                     /locus_tag="VIJ87_03280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443492.1"
                     /translation="MITGRDILYISSIEWDFLWQAHQEIVRRLAAAGNRVLYIENTGV
                     RSPGLKDTKRIASRLSRWLQSLHSGGVRQVAENICVYSPLVLPPFGPTWQRLLNRHVF
                     LRQLRGIVRTLGMKDCLIWTYLPTDTAVDIIRAHRNDRSLVIYYSVADFSYLTPNVKQ
                     LEKSEKELIVLSDLVFATCSELATRLSHNGSSSHLFPPGVDISAF"
     gene            complement(624..>1108)
                     /locus_tag="VIJ87_03285"
     CDS             complement(624..>1108)
                     /locus_tag="VIJ87_03285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443493.1"
                     /translation="KLEWVCGLAEVVRADPELDWEDLLNRAKDAQAIGVVSVGLLLAH
                     DFLEAPIPMNIIRKLRVQSREDVIDQIVSRFFTDSSASFPLAQRIRLHLKLMDSFSEK
                     ARYCLRLGLTTTPVDWEMISLPESALFLYYPLRALRLLKKYGRKSTPITAKDRSVGPV
                     "
BASE COUNT          302 a          271 c          270 g          265 t
ORIGIN      
        1 aaatgctgat atatctacgc cgggtggaaa aaggtgggag gaactgccgt tatgtgaaag
       61 tcgtgttgcc aattcggagc aagtcgcaaa cacaagatcg ctaagaacaa taagctcttt
      121 ctcactcttt tccagctgtt tcacattcgg tgtgagataa gaaaaatctg cgacgctgta
      181 gtagatgacc aaacttcgat cattgcggtg agcgcgaata atgtcgacgg cggtgtctgt
      241 aggcagatac gtccagatca gacaatcttt catgcccaga gtgcgaacga ttcctctaag
      301 ctgacgcagg aaaacatgac gattcaatag acgctgccaa gtcggaccaa acggtggtaa
      361 gacgagcggt gaataaacgc aaatgttctc cgctacctgt cgaacaccac ctgaatgcaa
      421 cgattgcaac caccgggaca accgtgaagc gatacgtttt gtatctttga gtccaggcga
      481 ccttaccccg gtattctcga tatagagaac acgattgcca gccgcagcca aacgtcggac
      541 gatctcctga tgcgcctgcc aaagaaagtc ccattcgata ctcgatatgt agaggatgtc
      601 gcgaccagtg atcatatgtg cggtcagacc ggcccgacgg atctatcctt agcggttatt
      661 ggtgtacttt tccggccata cttcttaagt agcctgagag ctcttaatgg ataataaagg
      721 aacaaagcag attcgggcag cgatatcatc tcccaatcta ctggagtggt tgtcaaaccc
      781 aggcgtagac aatagcgagc cttctcgctg aacgaatcca ttaacttcag gtgcagtctg
      841 attctctgag cgagcgggaa agatgctgaa ctgtcggtaa agaaacgaga gactatttga
      901 tcgatcacgt cttctcgact ttgtactcgc aactttcgaa tgatgttcat tggaattggg
      961 gcttctaaaa agtcatgggc caacagtagg cctactgaaa cgacgccgat tgcttgagcg
     1021 tcttttgcgc ggttgagtaa atcctcccaa tcaagttccg gatctgcgcg cacgacctca
     1081 gccagtccgc atacccactc caactttt
//
LOCUS       DATCGC010000342         1036 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_337560, whole genome shotgun sequence.
ACCESSION   DATCGC010000342 DATCGC010000000
VERSION     DATCGC010000342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1036)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1036)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1036
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_337560"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..519
                     /locus_tag="VIJ87_03290"
     CDS             <1..519
                     /locus_tag="VIJ87_03290"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY5443494.1"
                     /translation="SHPRLHPENVNTIVEEAVRFFTPEVQDRDMVVEQELRADLPLLQ
                     LDREQMKQAFYNVIKNSLEAMRRHGTLRIRTDLDDTYVMVSFVDTGSGMSAENLSHVF
                     EPYFTTKPSGTGLGLLIVRRIVREHGGELSIESSQGKGLTLTIRLPYVDKRIRMLEAG
                     ETQMPLQAAATY"
     gene            complement(537..>1036)
                     /locus_tag="VIJ87_03295"
     CDS             complement(537..>1036)
                     /locus_tag="VIJ87_03295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443495.1"
                     /translation="DPKLESSSGEGSLHVSDGRIDDLPVLEKLAELAQKKSFEHLALN
                     DCSLRVGWKYPRIDIENIAIEERGKFRIEGEMSLDQRRLHGTIRLGLTREYLDWLPNP
                     EEVFSRKEGDYLWTNVRLSGTIDDPGQDLSPRIIELFKQSPGAYLRLLFRQFEAWLKK
                     GFGSD"
BASE COUNT          253 a          278 c          254 g          251 t
ORIGIN      
        1 tcgcatccac ggcttcatcc ggaaaatgtg aacacaattg tcgaggaagc ggtgcgtttt
       61 tttactcctg aagttcaaga ccgcgacatg gtcgtcgaac aagagctgcg cgcggatctg
      121 cctttgcttc aactggatcg tgaacagatg aagcaggcat tttacaacgt gatcaaaaac
      181 agccttgaag ccatgagacg ccatgggacc ctgcgcattc gtaccgatct ggacgacaca
      241 tacgtaatgg tcagtttcgt tgataccggc agtggcatgt ccgcagaaaa cttgagccac
      301 gtattcgaac cctatttcac caccaaaccg tccggtactg gtctaggatt gttaatcgtt
      361 cgtcgcattg tgcgcgaaca cggtggggaa ctctccatcg agagcagcca gggcaaaggg
      421 cttaccctta cgattcgatt accgtacgtt gacaagcgca ttcgaatgtt ggaggcggga
      481 gaaacccaaa tgccactcca agcagccgct acttattgaa tgcgcgcaag atgctatcaa
      541 tcgctgccaa atcccttttt caaccacgct tcgaactgac gaaagaggag ccggagatag
      601 gctccaggcg attgcttgaa cagttcgata atgcgcggac tcaggtcttg ccccgggtca
      661 tcaattgtac cggacagacg cacattggtc cataggtagt cgccttcctt gcgactaaag
      721 acttcttcag gattcggcag ccaatcaaga tattcgcggg taagcccgag tctgatcgtg
      781 ccgtgcaaac gacgctggtc gagcgacatt tctccttcga tccggaattt tccccgttct
      841 tcgatagcaa tgttctcgat gtcaatcctc ggatatttcc atccaaccct gagcgaacaa
      901 tcattcagcg ccaaatgttc gaacgatttt ttctgtgcca gttcggcgag tttttccaga
      961 acgggaaggt catcgattcg tccgtcactg acatgcagcg aaccttcgcc agacgagctt
     1021 tccagtttcg gatctt
//
LOCUS       DATCGC010000343         1186 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_104602, whole genome shotgun sequence.
ACCESSION   DATCGC010000343 DATCGC010000000
VERSION     DATCGC010000343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1186)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1186)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1186
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104602"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1186)
                     /locus_tag="VIJ87_03300"
     CDS             complement(<1..>1186)
                     /locus_tag="VIJ87_03300"
                     /inference="COORDINATES: protein motif:HMM:NF013720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443496.1"
                     /translation="VDNFPLMGEWSGLKGFWVAEAVWITHGCGVARAMAEWIVNGHPT
                     LAVHECDVNRFEAHQLGSRHIEERGAQNYVEVYDLLHPLQPMESPRPIRTTGFYLRQQ
                     ELGGFFLEASGYERPQWYEANAGLLSRYKSPRRDEWSSKFWSPIIGAEALSVRDAVGL
                     FDITTLKRIEVIGKGALEFLERLTTGNLRKKPGSITYCLLLNERAGIMSDITVMRRGE
                     HDFFIGVNSNIDINYLKQSAPDTVHVKDITAGTVGLGLFGPKSRELAQSLTRDNISNE
                     ALGYFKLKNTYLGHVPVMLCRLSYVGELGYEIYTSADFALKLWDTLWQAGKKYGLIAA
                     GRGAFNSMRLEKGYRSYGVDMTSEHNPHEAGLSFAVRKGGGYKGAETFNAINRDTLNK
                     RLV"
BASE COUNT          289 a          329 c          260 g          308 t
ORIGIN      
        1 acaccaggcg cttatttaat gtatcccggt ttattgcatt gaaagtctca gcgcctttat
       61 atcctccacc tttacgcact gcaaaggata gacctgcttc atggggattg tgctcactcg
      121 tcatgtccac tccataactg cgatatcctt tctccaggcg catggagttg aatgctccgc
      181 gcccggctgc aatgagtcca tatttttttc cagcctgcca aagcgtgtcc caaagtttca
      241 gcgcaaagtc ggcgcttgta tatatttcat atcccagttc acccacgtaa gagagcctgc
      301 acagcatcac cggtacatga ccgagataag tattttttag tttgaaatag ccgagtgctt
      361 cgttacttat gttatccctg gtcaaagact gggcaagttc ccgcgactta ggtccgaaaa
      421 gtccgagtcc aactgtcccc gcagttatat cttttacatg caccgtgtca ggtgctgatt
      481 gtttgagata atttatatcg atgttgctgt tcaccccaat gaaaaagtcg tgctccccac
      541 gtcgcataac tgttatgtcg ctcataatgc cagctctttc attgagcaac aaacaatagg
      601 taatcgaacc gggtttcttg cgcagatttc ccgttgtcaa tcgttcgaga aattccaggg
      661 cacctttacc aatgacttca atacgtttca atgtggtgat atcaaacagt ccaacagcat
      721 ccctgaccga aagtgcctca gcacctatga tcggcgacca gaattttgaa ctccactcat
      781 cacgtcgcgg actcttgtaa cgtgagagca agccggcatt ggcttcgtac cattgcggtc
      841 gctcataacc ggaagcctcg aggaagaaac caccgagttc ctgctgacgc aggtagaaac
      901 cagttgttcg aatgggacgt ggcgactcca tcggctgaag cgggtgcaac agatcataca
      961 cttcgacata gttctgcgcg ccgcgttcct caatatgtct tgatcccaac tggtgggctt
     1021 caaaacggtt gacatcgcat tcatgaactg ccagcgtggg atggccattg acgatccact
     1081 ccgccatcgc ccgggccaca ccacaaccat gggtgatcca tacggcttct gcgacccaga
     1141 atcctttcag tcccgaccat tcacccatca gcggaaagtt atcgac
//
LOCUS       DATCGC010000344         1072 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_171397, whole genome shotgun sequence.
ACCESSION   DATCGC010000344 DATCGC010000000
VERSION     DATCGC010000344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1072)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1072)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1072
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171397"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(208..579)
                     /locus_tag="VIJ87_03305"
     CDS             complement(208..579)
                     /locus_tag="VIJ87_03305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443497.1"
                     /translation="MNPTLQRAVTSFYNLIYEAQTFATTMSRIDTAEQEHYAGRIEGL
                     NWVLDRCQELEDMDANLTPSSLQRVLTEVKSDLDHELSVQRREKGRRADGREEALNFV
                     ADYLSSLITATDIESAKTPAA"
     gene            complement(655..>1072)
                     /locus_tag="VIJ87_03310"
     CDS             complement(655..>1072)
                     /locus_tag="VIJ87_03310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443498.1"
                     /translation="PAPLTRARGFSRVVEASAYSSITSWDITGVTSPQPPSIPFAAQA
                     IPFDEFLASGKLPEGYLTSEYIAQQFVERLVHYVLSVPASSYTMAQLGQLLEQINPRA
                     QVLFFKRLKETSPESLKDFAPLYYGFMNEFHSLLFT"
BASE COUNT          265 a          254 c          303 g          250 t
ORIGIN      
        1 ccggagcccc tgagggatct ggtcttggcc gccgagcggc actggaaaat agaccggctg
       61 gtttccgcgg gagacgtgac ataaaagact tttacattga tgcagcagtg accgccccga
      121 ctctcctatc atggtaacac attcagtcat gcgtccaaga ggatcgacgg ttacattgta
      181 cgggaagccc tgctgaagac gagagggtta cgctgccggc gtcttggctg actcaatgtc
      241 cgtagctgtg atcaggctag acaaataatc cgcaacaaaa ttgagagcct cctctcggcc
      301 gtctgcacga cggcccttct ctcgccgttg gaccgataat tcgtgatcga gatcggattt
      361 gacttccgtg agaacccgct ggagggaaga aggggtcaag ttcgcatcca tgtcttcgag
      421 ctcctggcag cgatcaagca cccaatttaa cccttcgatc cgccccgcgt aatgttcctg
      481 ttcagcagtg tcaatccgtg acatcgtggt cgcaaaggtt tgagcttcat aaatgagatt
      541 atagaagctc gtcactgctc gttgtaaagt tggattcatg tcgctccttt agacaaatta
      601 gtcaccaatc gattatacat gagaatgccc cgacgacaag gaaaaaatgt tgggctaggt
      661 gaataggaga gaatgaaact cgttcatgaa gccgtaatag agcggagcga aatccttgag
      721 actctctggg ctcgtttctt taagacgttt aaagaagagg acttgcgctc gagggttgat
      781 ctgttcgagg agctgaccca attgagccat ggtataactg ctagctggaa cgctgaggac
      841 gtagtgtacg aggcgttcga cgaattgctg tgcaatatac tcgctggtaa ggtagccttc
      901 cgggagtttt cctgaagcca gaaactcatc gaaaggtatg gcttgcgcgg cgaaggggat
      961 cgatggtggt tggggagagg tcacgccggt gatatcccag cttgtgatgg aagaataggc
     1021 tgatgcttca acaactctac tgaacccccg agcgcgcgtc aagggtgcag ga
//
LOCUS       DATCGC010000345         3975 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_404145, whole genome shotgun sequence.
ACCESSION   DATCGC010000345 DATCGC010000000
VERSION     DATCGC010000345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3975)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3975)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3975
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_404145"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            436..1284
                     /locus_tag="VIJ87_03315"
     CDS             436..1284
                     /locus_tag="VIJ87_03315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443499.1"
                     /translation="MIRSILFLFLCALPVSAQTIKEQTQRNLMAMTNISATQLVNGDR
                     YRVAMFGNRQVFNRQISFPQQGIKPGDEWYTLLQSSQLWKLSPQGDHYTYSDTCRWTE
                     RRRSLWSADSDWDGLVPCDGEVYVDGPNITRITQRLHPDHRRLVKTAFFDITYEFVEL
                     KDKRLLPTHMTMSAEFRNGRNYSLDIKWIDYKEFGAEVVLKEIDPDESPRPMHNGVNF
                     FNQEIPDNAKSSDDVTPPPDFASPRPSSSDVVSNPSGLRDATTSSESVRSWKTFFKRL
                     VPIRTR"
     gene            complement(1306..2973)
                     /locus_tag="VIJ87_03320"
     CDS             complement(1306..2973)
                     /locus_tag="VIJ87_03320"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY5443500.1"
                     /translation="MPIRRVVALSLILSLLSLPVLGQNGNTDLLARIRKEAMEHSQIM
                     KTMHMLTDVYGPRLTGSPNHKNAAEWAIKQMTAWGLENGHLEPWDFGHPGWLNERLSA
                     HIVSPVKDPLVCEALAWTPGTKGTVTAKAVQVILPERPSQDQLNIFFSGQKSRVKGKI
                     VLVGKQTIVPVNLNPPAKRTSDEQAQQRFGPNARPFAFPTPSPTPTPDPNAPKPLTNA
                     QIAEQVDLFLRDNGAVVRVNDAGREFRQIRAFNNRTFDVDKAVPTVVMSNEDFGRITR
                     ILADGTEVTLEFNIVNKVYPEGTTSYNTVAEIPGSDKADQVIMLGGHLDSWHAATGAT
                     DNAIGCAIMMEAARILKTLGVKPRRTIRVALWSGEEEGLLGSIVYVKEHFGSFEAPKP
                     GYEKFGGYFNIDSGTGRVRGAGVFGPPEGASIMREILAPFKDDGVVGAVASRSRALGG
                     SDNTSFSQAGLPGIGMGQDPIEYNSNTWHTNLDTYERILEDDVKKNAMVVAWSAYQLA
                     TADTLLPRFSNSDMPARPPETAAAQPSTPKAKPAPKKVPISRRRGRR"
     gene            3123..>3975
                     /locus_tag="VIJ87_03325"
     CDS             3123..>3975
                     /locus_tag="VIJ87_03325"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: protein motif:HMM:NF014067.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HEY5443501.1"
                     /translation="MSRAIQTKDSSIEEGLPNSSRVYVEGQQAGVRVPFREITQTPTR
                     NFDGALIENPPVRVYDTSGPWGDPSVNCDVTEGLPALRREWILARADVEEYEGREQKP
                     IDDGYLTFDAANRARVKDVGKLEDFPALCRAPLRANPGACVTQLHYARQGIITPEMEF
                     IAIRENLGRTNQLAQSDDRSSVFHQHKGASFGAAIPQFVTPEFVREEVARGRAIIPAN
                     INHPESEPMIIGRNFLVKINANIGNSAVASSIDEEVDKMRWSIRCGSDTVMDLSTGKN
                     IHETREWI"
BASE COUNT          933 a         1074 c         1019 g          949 t
ORIGIN      
        1 cgctgtttct tagaaaccgg cgacgactaa ttgccatttg cgccttgtat cgcgaaacga
       61 aattccggct ttagagtttc aaccctcaga ctcttttaga gccgccagga ggcggaaaca
      121 cttttctttt aaacacgaca accttcaatc gtttgagggt cactaatcgg attatgaggt
      181 agaaatggct gattaatcaa aattgaaagg accgagcaag atggggtcct attcgtggtg
      241 gcccggtctt tgagggttgc tgcgtcgttc tcagtcacac ggttttgagc taacagccag
      301 gaatacaaag agccgccgtt ctgaaactaa agaagctgct cacggcgcta taggtttcaa
      361 agaagcgggc ttgtcctctg ttggagcaga tgacaagccc ttggtgatca cagctagcac
      421 ttggaggcgc ccaccatgat caggagcatt ctatttctat ttctctgcgc gcttccagtc
      481 tcggctcaaa caatcaagga acagactcaa cgaaatctga tggcgatgac caacatctcg
      541 gccacccagt tggttaacgg agaccgctat cgtgtggcaa tgttcggtaa ccggcaggtc
      601 ttcaatcgcc aaatatcttt tcctcaacag ggcattaaac ccggcgacga gtggtacaca
      661 cttttgcaat catcacagct ttggaaactc agtccccagg gcgaccacta cacctactcg
      721 gatacttgcc gctggactga gcgccgacgt tcactttggt cagctgattc cgactgggac
      781 ggcttggtac cgtgcgatgg tgaagtttac gtcgacggtc cgaacatcac gcgcatcacc
      841 caacgccttc atcccgacca ccggcgacta gtcaaaaccg ctttttttga tatcacctac
      901 gaattcgtcg agctaaaaga caaacgattg ctgccgacgc atatgacgat gtcggccgaa
      961 ttcagaaacg gccggaacta tagcctcgat atcaaatgga tcgattacaa agaatttggc
     1021 gccgaggtcg tattgaaaga aatcgaccct gatgagtctc cgagaccaat gcataatgga
     1081 gtcaacttct tcaatcagga gattccagat aacgctaaat cttctgacga cgtaactccg
     1141 ccacctgatt ttgcgtcgcc caggccttcc tcgtccgacg tagtgagcaa tcccagcggc
     1201 ctacgcgacg cgaccacgag cagcgagtca gtccgctcct ggaagacatt tttcaaacgg
     1261 ttggttccaa ttagaacgcg ttgataaccg tgtctcccct tctcgtcatc tccgcccacg
     1321 tcttctcgaa attggaacct tcttaggcgc tggctttgcc tttggtgtcg agggttgcgc
     1381 ggccgctgtc tcgggtggac gagccggcat gtcggagttg gaaaacctcg gcaatagcgt
     1441 atcagcggtc gcaagttggt aggcagacca cgctaccacc atcgcatttt tctttacatc
     1501 gtcctcgagt atccgctcat acgtatcgag atttgtgtgc caggtgttgc tgttgtactc
     1561 aatcggatcc tgacccattc cgattccggg taaccctgcc tggctaaacg aagtgttgtc
     1621 agatccgcca agtgcgcgac ttcgtgacgc cactgcacca acaactccat cgtctttgaa
     1681 cggcgccagg atctcgcgca tgatgctggc gccttcaggc ggaccaaaaa caccggcgcc
     1741 tcgaacgcgg ccggtgccgg aatcgatgtt gaagtagcca ccaaactttt cataacctgg
     1801 ctttggagct tcaaacgagc cgaaatgctc tttcacgtag acgatcgatc ccagcagtcc
     1861 ttcttcttca ccactccaca atgcaacccg aatcgtgcgc cgcggtttca cgccaagtgt
     1921 tttcagaatt cgcgccgctt ccatcatgat cgcgcacccg atcgcgttgt cagttgcacc
     1981 tgttgctgcg tgccacgaat cgaggtgtcc accaagcatg atgacttggt ctgctttgtc
     2041 tgaacccgga atctcggcga cggtgttgta agaagtggtg ccttccggat agaccttgtt
     2101 gacgatatta aactcgagtg ttacttcggt gccgtcagca aggatgcgcg tgatgcgtcc
     2161 aaagtcttcg ttactcatca ctacagtcgg tacagctttg tcgacgtcga acgtacgatt
     2221 gttgaaagca cgaatttgac gaaactcacg accggcatcg tttaccctta ccaccgcacc
     2281 gttgtcacgc agaaacagat ccacttgctc ggcaatctgt gcgttcgtta atggctttgg
     2341 cgcgttcggg tcaggcgtag gagtcggtga aggagttggg aaagcaaatg gacgcgcgtt
     2401 tgggccgaag cgttgttgcg cttgttcatc gctggtgcgc tttgccggtg ggtttaggtt
     2461 gacgggaacg attgtctgct taccaaccag gacaatcttg cctttaactc gactcttttg
     2521 accggaaaag aaaatgttca actgatcctg cgacggtcgc tcaggcaaaa ttacctggac
     2581 agccttggcc gtaacagttc ctttggtacc aggtgtccac gcgagcgctt cgcaaaccag
     2641 tggatcctta accggcgaaa cgatgtgcgc gctcaatcgt tcattcagcc aacccggatg
     2701 accaaagtcc cacggctcga gatgtccatt ctccaggccc cacgctgtca tttgcttaat
     2761 cgcccattca gcggcgttct tatgatttgg tgaaccagtc aagcgcggac catagacatc
     2821 agtaagcatg tgcatcgtct tcatgatctg cgagtgctcc attgcttcct ttcgaatgcg
     2881 cgcaagcagg tcagtatttc cgttttgacc gaggacgggc agggaaagta gcgacagaat
     2941 tagcgagaga gcaacaactc ttcggatggg catcaatttg tctccgtaga acttcaggtg
     3001 tgatcgcgaa cgctgcgaat tataaccact gccacaaggc ttagccaaag actcacaaag
     3061 tttcatttga aaggtagttt ccgccggttt cgtaatcggt ggattctgtg taatctgtgg
     3121 atatgagcag agctattcaa acaaaagatt cttccatcga ggaaggtctt cctaattcaa
     3181 gtcgcgtgta cgtcgaagga caacaggccg gggttcgagt gccgtttcgc gaaataacac
     3241 aaacaccgac ccgcaacttc gacggcgcac tgatcgaaaa tccacccgtg cgcgtttacg
     3301 acaccagtgg tccgtggggc gacccgtctg tgaactgcga tgttaccgag ggactaccgg
     3361 cgctacgacg ggaatggatt cttgctcgtg ccgatgttga agaatatgag ggccgagaac
     3421 agaaaccgat cgacgacggt tatctaacct tcgacgctgc gaatcgagcc cgagtgaaag
     3481 atgttggcaa gctcgaggat tttcctgcgt tgtgtcgtgc gcctttgcgc gcaaacccgg
     3541 gcgcgtgtgt gacccagttg cactacgctc gccaaggcat catcactccc gagatggagt
     3601 tcatcgcaat ccgcgagaac cttgggcgaa cgaatcaact ggcccagagc gatgatcggt
     3661 cttctgtctt tcatcaacac aaaggagcct ctttcggagc agctatcccg caatttgtaa
     3721 cacctgagtt tgtccgtgaa gaagtcgctc gtggccgcgc tatcattccg gcaaacatca
     3781 accatccaga atcggaaccg atgatcatcg ggcgaaactt cctcgtgaag atcaatgcca
     3841 acatcggcaa ctcggctgtc gcctcgtcga ttgatgaaga ggttgacaag atgcgttggt
     3901 cgattcgctg cggttctgac acggtgatgg atctgtccac gggcaagaac atccacgaga
     3961 cgcgcgagtg gatcg
//
LOCUS       DATCGC010000346         1916 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_304663, whole genome shotgun sequence.
ACCESSION   DATCGC010000346 DATCGC010000000
VERSION     DATCGC010000346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1916)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1916)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1916
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304663"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..317)
                     /locus_tag="VIJ87_03330"
     CDS             complement(<1..317)
                     /locus_tag="VIJ87_03330"
                     /inference="COORDINATES: protein motif:HMM:NF019500.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005267 - potassium channel activity
                     [Evidence IEA];
                     GO_process: GO:0034220 - monoatomic ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium channel family protein"
                     /protein_id="HEY5443502.1"
                     /translation="MGVIAVITAIAFGTVVFHLLEGWSILDSLYVTAQTVTTVGFGDL
                     APRTIRGRAFATVFMMVGVGVVLYALSSAVQSIVQSELLATFGRRRLSRKMSKLRDHF
                     IICG"
     gene            703..>1916
                     /locus_tag="VIJ87_03335"
     CDS             703..>1916
                     /locus_tag="VIJ87_03335"
                     /inference="COORDINATES: protein motif:HMM:NF013106.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase domain-containing protein"
                     /protein_id="HEY5443503.1"
                     /translation="MVSYVEPQQSFGRRVLRRLVSAPVVIPVVFLSAIVFGILVYYWT
                     VFSGRIDNLLKGEVYTRSAGIYAAPKQLRVNETISEEELLAFLKRAGYVEKATQADNA
                     RGRYLMNGLTVDIEPSMTSSVDGQQQFQHVRVQFAKGGKSIASLSDLNGHGSLERASL
                     EPELISSVTGRERAKRKVIGFNDLPSNLVNAITVTEDRSFFEHHGVNFRGILRAAVRR
                     YDSDPNSPIARQGGSSITQQLVKNLLLSPEQTPKRKISEAYMSIILETRLSKEQIFSL
                     YCNQVYMGQQAGFSINGFGEAASAYFNKDVTNLTLPESAFLAAIIRSPNRYNPYHDLQ
                     TATARRNQVLDSMAETGKITQDDANKAKATPLQVAPTKGRIDVSDAPYFADYVQNQLG
                     DMIAGTGTAQHLR"
BASE COUNT          493 a          497 c          480 g          446 t
ORIGIN      
        1 ccgcagatga taaaatggtc tctgagttta ctcattttgc gtgaaagccg gcgacggccg
       61 aaagttgcaa ggagttctga ctggacaatc gattgaacag cactcgagag agcatacaaa
      121 acaactccaa ccccaaccat cataaagacg gtcgcaaatg cacgtcctcg aatagtgcgt
      181 ggcgccagat cgccaaaccc aaccgtcgtc accgtctggg cggtcacata aaggctgtcc
      241 agtatagacc agccctccag caggtgaaat acaacggttc caaacgcaat agctgtgatc
      301 acggctatga cgcccatacg taagcgcgcg cgattattgc tagttcgaag agggttggat
      361 gttagactca taatgccagg gcggtaggtg ctgtcgattt cgaattgcca actgccaatt
      421 gtatttcggc ttagaaccca tttgcattgg caacgaaaat tgacatttgg caatcggaaa
      481 ttggtaatga atcctgaggt cagccacggt agcgaatgag gttatgcctg tcaaacacgg
      541 tttcgagaga actgaacggc taatgttacg taatactcga aagaatcagg agggttagca
      601 cccgacaaga cagtcactgc ccgttccttt atgccagtac gttatccacc aacaaaccaa
      661 gtgtccccag gaaagtccgg tcgtgatcct cgcagctctc gagtggtatc ttacgttgaa
      721 ccgcagcaga gctttgggcg aagagtcttg cgccgacttg ttagtgcccc ggttgtaatt
      781 ccagtcgtat ttctcagtgc gattgtattt ggcatccttg tctattattg gactgtcttt
      841 tccggccgga tcgacaacct tctcaaaggc gaagtctaca ctcgttcggc aggcatctat
      901 gctgctccca aacaactgcg cgttaacgaa acgatttcgg aagaagaact actcgccttc
      961 ttaaaacgcg ccggttacgt cgagaaggcg actcaagctg ataacgctcg tgggcggtac
     1021 ctgatgaatg ggcttaccgt tgacatagaa ccgagtatga catcgagcgt tgatggtcaa
     1081 cagcagtttc agcatgtccg agttcagttt gcaaagggcg gaaaatctat cgcttcgcta
     1141 tctgacctga acggtcacgg atctttggag cgagcctcgc tggaaccgga gctgattagc
     1201 tcagtgaccg gacgcgaacg agccaagcga aaagtcattg ggtttaatga tctaccttcc
     1261 aacctcgtca atgcgatcac tgttactgaa gaccgttcat tcttcgaaca tcatggtgtc
     1321 aacttccgcg gcattttgcg cgctgcggta aggcgctacg acagtgatcc gaattcacct
     1381 attgcccgcc agggtggctc gagtatcact cagcagctgg tgaaaaatct tttgctgtcg
     1441 cctgagcaaa cacccaagcg aaaaatttct gaagcgtata tgtcgatcat cctggagacc
     1501 cgtctctcaa aggagcagat cttttcgctg tattgcaacc aggtttacat gggccagcag
     1561 gcaggttttt cgatcaatgg atttggcgag gccgcgagtg cttacttcaa caaagacgta
     1621 acgaacctga ccttgcccga gtcagctttt ctcgccgcca ttattcgtag tccaaatcgc
     1681 tacaacccgt atcacgatct tcaaacagcg acagcgcgtc gcaaccaggt tctcgattca
     1741 atggcggaga ccggaaagat cacccaggac gacgccaaca aagcgaaggc tacaccgctg
     1801 caagtggccc cgaccaaggg acgaatcgat gtttctgacg cgccgtactt tgccgattac
     1861 gttcagaatc aacttggtga catgattgcc ggtacgggaa cggctcagca ccttcg
//
LOCUS       DATCGC010000347         1415 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_71591, whole genome shotgun sequence.
ACCESSION   DATCGC010000347 DATCGC010000000
VERSION     DATCGC010000347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1415)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1415)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1415
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_71591"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1360
                     /locus_tag="VIJ87_03340"
     CDS             <1..1360
                     /locus_tag="VIJ87_03340"
                     /inference="COORDINATES: protein motif:HMM:NF012784.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000028 - ribosomal small subunit assembly
                     [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HEY5443504.1"
                     /translation="SQIDVVPPKDLQQFVGNTYDFKIVKLNDDRKNVVLSRREVIEQE
                     RSEKRQKFLENVNLGDRVVGTVKNITDFGAFIDLDGMDGLLHVTDITWGRLGHPGELL
                     KVGQQLEVVVLDINKEKERVSLGLKQTQKNPWDQIEERFPAGQRIKGKITNLVPYGAF
                     VEIEEGVEGLIHVSELSWTKRIMRPSDILSVGQEVEAVVLGVNKEEQKISLGLRQLET
                     NPWDEIEKKFTIGRQVKGTIRNMTAYGAFVELEEGIDGMIHVSDLSWTRKINHPSEMF
                     KKGDEVEAVVIDIDKVNQRISLGIKQLADDPWKMIDEKYKIGDLVNGKVTKLASFGAF
                     VQLQDDIDGLVHISQLSEDHVAKVKDILKVGQEVEARVIKVDKVERRIGLSIKAANYS
                     EEQLRKEVESFDTLRPGEDMVGLEKAFAAAEQEEYRPGESKRATKESSDSDDESKNES
                     GK"
BASE COUNT          390 a          330 c          407 g          288 t
ORIGIN      
        1 atcgcaaatc gacgtcgttc cgccaaagga tttgcagcag ttcgtcggta acacctatga
       61 cttcaaaatc gttaagctca atgacgaccg aaagaacgtc gtgctcagcc ggcgcgaggt
      121 gatcgaacag gagcgcagcg aaaagcgcca aaaattcctg gaaaacgtga acctcggcga
      181 tcgtgtagtc ggcaccgtaa aaaacatcac ggatttcggc gcctttattg atctcgacgg
      241 tatggatggt ttgctgcacg tgaccgacat cacgtggggt cggctgggac atccgggcga
      301 gctgttgaaa gtcgggcagc agttggaagt cgttgtgctc gacatcaaca aggaaaagga
      361 gcgcgtttcg ctcggactga agcaaacgca gaagaaccca tgggatcaga tcgaagagcg
      421 tttccccgct ggacagcgaa tcaaaggcaa gatcaccaat cttgtaccct atggcgcttt
      481 tgttgagatc gaggaaggcg ttgagggtct aattcacgtg tcagaacttt cgtggacgaa
      541 acgtatcatg cgtccttccg atatcctcag tgttggccag gaagtcgaag ctgttgttct
      601 gggcgtgaac aaagaggaac aaaaaatttc actcgggctg cgccagctcg agacaaatcc
      661 gtgggatgag atcgagaaga agtttaccat cggcagacag gtcaaaggca cgattcggaa
      721 catgaccgct tatggcgcgt tcgtggaact ggaggaaggc atcgacggca tgatccacgt
      781 ctccgattta agttggaccc gaaaaatcaa tcaccccagc gagatgttta agaaaggcga
      841 tgaagtggaa gctgtggtga tcgacatcga caaagtcaat caacgcatca gtctgggtat
      901 taaacagctg gccgacgatc cttggaaaat gatcgatgag aaatacaaga tcggggacct
      961 cgtcaacggc aaagtaacca agctcgccag ctttggcgcc tttgtgcaat tgcaggacga
     1021 cattgatggg ctcgtgcaca tctcacagtt gagcgaggat cacgtcgcca aagttaagga
     1081 catcctgaaa gttggccagg aagtcgaagc gcgcgtgatt aaagtggaca aggtcgagcg
     1141 ccgcatcggg ctctcgatta aggcggcgaa ttattccgaa gaacaactgc gcaaggaagt
     1201 cgagtcgttt gatacgcttc gtcccggcga agatatggtt ggattggaaa aagctttcgc
     1261 cgcagccgaa caggaagaat atcgccctgg tgaatccaag cgtgccacga aggagtcgag
     1321 cgactcggac gacgaatcga agaacgaatc gggcaaatag ttctcgcttt ttcgtagctg
     1381 ttcagaggta gtcgggccac aaatgcgtgc cccat
//
LOCUS       DATCGC010000348         1810 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_171408, whole genome shotgun sequence.
ACCESSION   DATCGC010000348 DATCGC010000000
VERSION     DATCGC010000348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1810)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1810)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1810
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171408"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1310)
                     /locus_tag="VIJ87_03345"
     rRNA            complement(<1..1310)
                     /locus_tag="VIJ87_03345"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            complement(1688..1763)
                     /locus_tag="VIJ87_03350"
     tRNA            complement(1688..1763)
                     /locus_tag="VIJ87_03350"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1728..1730),aa:Ala,seq:tgc)
BASE COUNT          373 a          537 c          413 g          487 t
ORIGIN      
        1 gcattcgcac ttctgatacc tccaccaccc ctcacgggta tggcttcatc agcttacaga
       61 acgctccgct accgcttgca gcaagctgca aacccaaagc ttcggtgtat ggctttagcc
      121 ccgttacatt ttcggcgcaa agacccttat ttagaccagt gagctgttac gctttcttta
      181 aaggatggct gcttctaagc caacctcctg gttgttttgg gatccctaca tcctttccca
      241 cttagccatg acttggggac cttagctgta ggtcagggtt gtttcccttt tcacgacgga
      301 cgttagcacc cgccgtgtgt ctgccgacta gtactcccag gtattcggag tttggttagg
      361 tttggtaatc cggtgaggac ccctagccca tccagtgctc taccccctgg ggtattcggt
      421 cgacgctcta cctaaataga tttcgcggag aaccagctat ttccgagttt gattggcctt
      481 tcacccctag ccacaagtca tcccgaacta ttgcaacagt tatgggttcg gtcctccagt
      541 aagtgttacc ttaccttcaa cctgctcatg gctagatcac tcggtttcgg gtctaatgcg
      601 acgaactgaa cgccctgttc agactcgctt tcgctgcgcc tacacctatc ggtttaagct
      661 tgctcgtcac actaagtcgc tgacccatta tacaaaaggt acgtggtcac ccaggacgaa
      721 ccttgggctt ccactgtttg taggcaatcg gtttcaggta ctctttcact ccccttgtcg
      781 gggtgctttt cacctttccc tcacggtact agttcgctat cggtcatgca cgagtactta
      841 ggcttggaag gtggtcctcc caatttcaga caggatttca cgtgtcccgc cttactcgag
      901 gacgattgat cgcattacgc gtacggggct gtcacccgct atggccctac tttccagaag
      961 gttccgcttg tctctcaatc gccactggcc tggtccgcgt tcgctcgccg ctactgacgg
     1021 agtctcggtt gatgtccttt cctacgggta cttagatgtt tcagttcccc gcgttcgcca
     1081 ctttacccct attttattca gggtaagtta cctattatcg atacttggaa accacagcag
     1141 caagtcaccc tgctgctctg attttccaag taccttaggt gggtttcccc attcggaaat
     1201 ctacggatca aagggtattc gcacctcccc gtagcttatc gcagcgtatc acgtccttca
     1261 tcgcctgtgc atgccaaggc atccaccaat tgcccttaag acacttgatc gttctcattg
     1321 ccaatgccca cctgcgcaat cccgaaggga ttgtcgcttc agccttcccc ttgcgaggtt
     1381 agcgtccgcg caatctcgaa gagattgtcg cctggaacag atcctgtgca ggatccgatc
     1441 cgatgtcatt ggcacaaaaa gaccagcttc tcgagatcgg ttcgagggcg cggttaggca
     1501 aacccatcat atgcaggaga ttgagcgtct cctgcgacaa atcacgaacc tttcggctca
     1561 tgaagttcga acaaatcttc tctttacgat gtcaaacaga acaggcggag agccaagaag
     1621 ctcgccgcaa acctttttac gaatgacttt ttccttcatc tctactcgac acctcttcca
     1681 gggaagatgg tggagccgga cgggatcgaa ccgacgacat cctgcttgca aagcaggcgc
     1741 tctcccagct gagctacggc cccactcttg aatggatcca cgttcctgga tccgcgcatg
     1801 atggaccgtc
//
LOCUS       DATCGC010000349         1059 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_370943, whole genome shotgun sequence.
ACCESSION   DATCGC010000349 DATCGC010000000
VERSION     DATCGC010000349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1059)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1059)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1059
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_370943"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..788
                     /locus_tag="VIJ87_03355"
     CDS             <1..788
                     /locus_tag="VIJ87_03355"
                     /inference="COORDINATES: protein motif:HMM:NF022188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Rossmann-like and DUF2520 domain-containing
                     protein"
                     /protein_id="HEY5443505.1"
                     /translation="IQAMVSRRLSNTKRAAAFLDVPVHVLAAKELGKLEVSDLIIVST
                     PDDQIASVVESLSRLQRTTTVLHTSGALSSGVLAPLAKRGWNTGSIHPLVSVSDPLIG
                     AARFEGAFWCVEGSPKAMQIGRRLVRDLEGRSFSISDKAKPLYHAAAVMASGNVVALF
                     DIAIDMLSQCGLTRPESKRVLLPLLETTLSNLTKHTPAEALTGTMARGDIATVRRHLS
                     SLKGKRLEEARALYCLLGNKALLLAVENGLDRKVADQIRRELK"
BASE COUNT          260 a          271 c          270 g          258 t
ORIGIN      
        1 caatccaggc aatggttagt cgcaggcttt cgaatacaaa acgggcagcc gcttttttag
       61 acgtcccagt tcatgttctg gccgcaaaag aacttggtaa gctcgaggtt tccgatctga
      121 ttatagtttc aacgccggac gatcagattg cctcggtcgt ggaatcactc tcaagacttc
      181 aaagaaccac aaccgttttg cacacaagtg gcgccctctc ttcaggtgtt ttggccccac
      241 tcgctaaaag gggctggaat actggctcta tccatccgct cgtctcagtt agcgatccat
      301 tgataggtgc ggcgcgcttt gaaggcgcgt tctggtgcgt tgaaggtagc cctaaggcaa
      361 tgcagattgg tcgccgactc gttcgagatc tggagggccg tagcttctcg atcagtgaca
      421 aggcgaagcc gctctaccac gccgcagcag taatggcgtc cggcaacgtc gtcgctttgt
      481 tcgacatagc aatcgacatg ttgagtcaat gtggacttac tcgaccagaa tcgaaacgcg
      541 tcctactccc actcttagaa actacacttt ccaatctgac gaagcacaca ccagctgagg
      601 cattgaccgg caccatggca agaggcgaca tcgcaaccgt tcggcgccac ttaagttcat
      661 tgaaagggaa acgactcgag gaggcgcgag cgctttactg cttgcttggt aacaaggccc
      721 ttctgctggc cgttgaaaat ggtttggatc gcaaagtcgc agatcaaata cgcagagagt
      781 tgaagtgaca gccgaaaaga gggtagtgcc ctagtttgag ttttctctgt gctacctctg
      841 tgccctctgt gtagcaagaa cccaacttct tgttttttta agccaagtat tgacaggagg
      901 aagatccacg aaatcacacg aatcaacacg aaatcaaacc aacacgaaat acagttcgtg
      961 atgtttcgtg tgagttcgtg gatcgtagct tttggttgcg gctgaggccg cgctgtgtct
     1021 ctgtggtgaa atctatctca gcaacttcct caagcacag
//
LOCUS       DATCGC010000350         1047 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_304786, whole genome shotgun sequence.
ACCESSION   DATCGC010000350 DATCGC010000000
VERSION     DATCGC010000350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1047
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304786"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1047)
                     /locus_tag="VIJ87_03360"
     CDS             complement(<1..>1047)
                     /locus_tag="VIJ87_03360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443506.1"
                     /translation="PVHTVYGGAHLFKADSAKRLGSLARRSLDQFAPDFIVFAHALDL
                     PGSSQLPESLAEADDLVSELENEPERLGNDNKPAWLAHTIYERVSEKLKREPVEDFRI
                     DFEDGYGNRPDSEEDGHAEEAATEVAQGIKNGTLPPFIGIRIKPFNEELRARSFRTLD
                     IFVSTLAEKSDAKLPANFVITLPKITIPEQVSTLAALLGRLEKQNGLGEHTLKFEMMI
                     ETTQSIINHRGEINLPLLLGAAEGRCVAAHFGTYDYTAGCNITAAHQHMMHPACDFAK
                     NMMQVAFAGTGIWLSDGATNIMPVAPHRFVEGGSQLNAEEIEENRQVVHRAWKLHYDH
                     IQHSLVTGFYQGWD"
BASE COUNT          223 a          278 c          292 g          254 t
ORIGIN      
        1 aagtcccaac cttgatagaa accggtgacg agcgaatgtt ggatgtggtc gtaatggagc
       61 ttccaggccc gatggactac ttgccgattt tcttcgatct cctctgcatt tagctgcgag
      121 ccaccctcaa caaaccgatg cggcgcaaca ggcatgatgt tagttgcgcc atctgaaagc
      181 cagatgcccg ttcctgcaaa cgcgacctgc atcatattct tcgcgaagtc acaggccgga
      241 tgcatcatgt gttgatgcgc cgcggtaatg ttgcagcctg ctgtgtagtc gtaagtgccg
      301 aagtgcgccg ccacgcaacg tccttcagcg gcgccaagca gcagtggaag attgatttca
      361 ccgcggtgat tgatgatcga ctgcgttgtt tcgatcatca tctcaaattt caaagtatgt
      421 tcccccaagc cattttgctt ttcgagtcga ccaagcaaag cggcaagtgt tgatacctgc
      481 tccggaatag tgatcttggg caaggtgatc acgaagttgg ctggcagctt cgcgtcgctt
      541 ttctcagcaa gcgtggagac aaagatgtcg agtgtgcgga aactgcgcgc gcgtagttct
      601 tcgttgaatg gcttgatgcg gatcccaatg aaaggtggca aggttccgtt cttgatcccc
      661 tgggcaacct cggtggccgc ttcttcggca tggccgtctt cctccgagtc gggccgattc
      721 ccgtaaccat cttcgaaatc gatgcggaag tcttcaacag gttcgcgctt cagtttttca
      781 ctgactcgct catagatcgt gtgggccaac caggccggct tgttgtcgtt tccaagtcgc
      841 tcaggttcat tctcaagttc cgagacgaga tcgtcggcct cggcaagtga ctccggcagt
      901 tggcttgaac cgggtaaatc caacgcgtgc gcaaagacga tgaagtccgg agcaaactgg
      961 tcgagtgaac gacgcgccag cgatcctagc cgtttggctg agtcggcttt gaaaagatga
     1021 gcgccaccgt agaccgtgtg aaccggt
//
LOCUS       DATCGC010000351         1316 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_404281, whole genome shotgun sequence.
ACCESSION   DATCGC010000351 DATCGC010000000
VERSION     DATCGC010000351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1316)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1316)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1316
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_404281"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(221..904)
                     /locus_tag="VIJ87_03365"
     CDS             complement(221..904)
                     /locus_tag="VIJ87_03365"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: protein motif:HMM:NF001453.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004719 - protein-L-isoaspartate
                     (D-aspartate) O-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HEY5443507.1"
                     /translation="MQSANRHQPAALQEYTIPRDRMVARLREHYGIKDLKVLEAMRNV
                     PRHFFVPEALRGRAYGDHALPISANQTISQPYIVAKMTELLELDANARVLEIGAGSGY
                     QTAVLSKVAAQVYSIERIGDLAREAQTRIRQLEIYNATVKCFDGTLGWAAHAPYDGIL
                     VAAGGPTIPEPLITQLKVGGRLVLPVGESRDAQRLMRVVKTEQGRKVEDHGACAFVPL
                     IGQHGWTER"
     gene            complement(1033..>1316)
                     /locus_tag="VIJ87_03370"
     CDS             complement(1033..>1316)
                     /locus_tag="VIJ87_03370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443508.1"
                     /translation="PGEIKGVKVTRLGIKMKYARPVITEHIDPRGKPYFWIGEEYFNR
                     NSAEGTDYHAVELGYVSVTPLKCDMTDHEALTAIETWNYLSDSELLHKD"
BASE COUNT          319 a          337 c          326 g          334 t
ORIGIN      
        1 atcagtaaaa cgacgccgga atatccgagc gcagagatta ccgagacgat gaagtacgac
       61 aggtactcga ttatttttgc gatcatttgg gtttcgaatg tccgatatgc tttagcttgt
      121 cgatgtgatt agaaacttgt cgatgtgatt agaaagaggt cgctttggtt cgatatgctt
      181 ggcggcatcg acaagctaaa gcatatcgaa catcactagt tcatctttcc gtccaaccgt
      241 gctgacctat gagcggaaca aaagcacagg ctccgtggtc ttcaactttt cttccctgct
      301 cggtcttaac gacacgcatt aaccgctgcg catcgcgcga ctcgccgacc gggagtacta
      361 agcgaccacc aaccttcaat tgcgtaatga gaggttcagg tattgttggc ccaccggctg
      421 ccaccagaat tccgtcatag ggagcgtgcg cagcccaccc gagcgtgccg tcgaaacact
      481 tcacggtggc gttgtaaatc tcaagctgtc gaatccttgt ttgggcttca cgcgccagat
      541 cgccaatgcg ttcaatcgaa taaacctgcg ccgcgacttt cgacaacact gcggtttgat
      601 aaccagaacc tgcaccaatc tcgagcacac gagcgttcgc atcgagttcc aacagttccg
      661 tcatcttcgc cacgatgtac ggttgcgaga ttgtttggtt ggcactgatg ggtaacgcgt
      721 ggtcaccata cgcccgtccg cgaagggctt ccggaacaaa gaagtgacgc ggtacgtttc
      781 gcatcgcttc caaaaccttc agatctttaa tgccgtagtg ttcgcgcaga cgagcgacca
      841 ttcgatcccg tgggatggtg tattcctgca aggcggcagg ctgatgtcga tttgcggatt
      901 gcaaggaaag aagtcgacct taggaattga aatttgtact ttgtactttg tgcttagtgt
      961 tttgttcttt gtcgaggaag acatcagcgc tcgagggtca aagaacaaag tacaaagaac
     1021 aaagtactac aatcagtcct tgtgcagcag ttccgagtca ctcaggtaat tccaggtttc
     1081 aatcgccgtg agtgcctcgt gatccgtcat gtcacacttc agcggagtga ccgaaacata
     1141 accaagttcg actgcatgat agtcagtgcc ctcggccgag tttctgttga agtactcttc
     1201 accaatccaa aagtagggtt tgccacgagg atcgatgtgc tcagtgatca ctggtcgcgc
     1261 atacttcatc ttaattccca gacgcgtcac tttcacacct ttgatttcac caggtg
//
LOCUS       DATCGC010000352         1348 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_238522, whole genome shotgun sequence.
ACCESSION   DATCGC010000352 DATCGC010000000
VERSION     DATCGC010000352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1348)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1348)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1348
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_238522"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(5..1249)
                     /locus_tag="VIJ87_03375"
     CDS             complement(5..1249)
                     /locus_tag="VIJ87_03375"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY5443509.1"
                     /translation="MTSFDTALDKSIAIPEPRRWRALTLLSVAILLGMALWFSGSAVV
                     PALTKEWKLTESQVSWISIAVQLGFVVGTFLSAVLNLSDIISARHLCAVAGLAGALTN
                     ACFGLYADHAASAIALRFLTGVCLAGVYPPGMKVMATWFRKRRGMALGVLVGALTLGK
                     ATPYLVNAVGSSSWRTNVLVVSLMAVVGSIVVLLFVEDGPYALPRASFDLKQVAGVFS
                     NRGVRLASFGYFGHMWELYGMWIWIPVMIRASVALSGGDPKFAETGSFLIIGFGAVGC
                     VIAGLLADKVGRTLITSWAMAISGTCCLVVGFLYGGNPYLLFVISAIWGASVVADSAQ
                     FSSCITELGDPQYIGTALTIQMCIGFLITTISIELIPKAVNVLTWRYAFMILAPGPLF
                     GVISMLRLRQLPEAVKIAHGKR"
BASE COUNT          375 a          393 c          320 g          260 t
ORIGIN      
        1 acgtttatct cttcccatgc gcgatcttca cagcctctgg taactgcctc aaacgcaaca
       61 ttgagatcac tccgaacagt ggcccaggcg cgaggatcat gaacgcatag cgccaggtca
      121 aaacattcac cgctttagga atgagttcaa tcgagatcgt agtgattaga aaaccgatac
      181 acatctggat cgttaacgcg gtgccgatgt actgcggatc gccaagctcg gtgatgcacg
      241 aagaaaactg cgccgagtca gccaccacac tcgctcccca gattgctgaa atcacaaaca
      301 gcaggtaggg attaccgccg taaagaaacc ctacgaccaa acaacaggtg ccgctgatcg
      361 ccatggccca ggaagtaatc agtgttcgcc caaccttgtc ggctaacaaa cccgctatca
      421 cgcaacctac tgcaccaaaa ccgatgatca aaaatgaacc agtctcagca aatttaggat
      481 cgcctcccga aagggcaacg ctcgctcgaa tcattaccgg aatccagatc cacatgccgt
      541 acagttccca catgtggccg aagtaaccaa aactggcgag ccgaaccccg cgattgctga
      601 aaacgcccgc cacctgcttc aggtcaaacg atgctcttgg caaagcgtat ggtccgtctt
      661 caacaaataa cagaacaacg atcgacccaa caactgccat cagtgaaaca acgaggacgt
      721 ttgttcgcca acttgaacta ccaaccgcat tgaccaggta tggcgttgcc ttaccgagcg
      781 tcaacgctcc gactaaaacg ccgagcgcca ttccacgtcg tttacgaaac catgtcgcca
      841 tcactttcat gcccggcgga tagacaccag ccaaacagac gcctgtgaga aaacgcaacg
      901 caatcgctga cgctgcatga tccgcgtaga gtccgaagca tgcgttggtt aaagccccgg
      961 caagaccagc tacggcgcag agatggcggg cactaatgat gtctgagaga ttgagtacag
     1021 cacttaggaa tgttccgacc acaaagccaa gctggactgc gatcgagatc caactgactt
     1081 gagactctgt cagcttccat tcctttgtga gggcgggaac aactgcggat ccgctaaacc
     1141 aaagcgccat gccgagcagt atcgctacgg aaagcaatgt tagcgctcgc cagcgtctcg
     1201 gttcgggaat cgcgatactc ttatcgaggg cagtgtcaaa actagtcatg gaagattgtc
     1261 agacactctt ggcaaattat caggttggga aggtggaccc tgtccccgct gatgtccgta
     1321 tggtctcgcc atcactcacg acatccgg
//
LOCUS       DATCGC010000353         1025 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_470823, whole genome shotgun sequence.
ACCESSION   DATCGC010000353 DATCGC010000000
VERSION     DATCGC010000353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1025
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_470823"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..581
                     /locus_tag="VIJ87_03380"
     CDS             <1..581
                     /locus_tag="VIJ87_03380"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEY5443510.1"
                     /translation="TTLRLKLESLKSTITDTTLSSSVDELQEIVKQLDSDVDFLAWQL
                     RPMALDDLGLAAALGNYVKQWAEHFDVDAEFRAGDFKGDRLLPQVETNLYRIVQEALT
                     NCAKHAKCSRAEILLERTDQHVVLIIEDNGVGFDTDAVPQHDSRWGLLGMRERGKLLS
                     GTVEVESSPNQGTTIYVRIPLMNKTDEGSEDE"
     gene            574..>1025
                     /locus_tag="VIJ87_03385"
     CDS             574..>1025
                     /locus_tag="VIJ87_03385"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY5443511.1"
                     /translation="MNKIRILLAEDHVTVREGLKMLIGREPDMEIVGEAADGREAIER
                     ASELRPEIVVMDISMPGLNGLKGTRKLKELYPEIHVIALTRHKESGYVQELLLAGASG
                     YVLKQSSSDELIRAIRAVHSGKSYLDPAVTSQALNKSSPGDLKVAISSS"
BASE COUNT          278 a          214 c          284 g          249 t
ORIGIN      
        1 taaccacgtt gcgtttaaag ctggagtcgt taaagtcaac gatcacggat acgactttaa
       61 gttcgtcggt ggatgagtta caggaaatcg tgaaacaact tgactcggat gttgatttcc
      121 tcgcgtggca actgagacca atggctctcg atgatctggg cctggcggct gcgttgggta
      181 attacgtaaa acagtgggca gaacattttg atgttgatgc agaatttcgc gcaggcgatt
      241 tcaagggcga ccgtttgtta ccgcaagtcg agacgaacct gtatcgaatc gttcaggagg
      301 cgttaactaa ttgcgctaaa catgcgaaat gttcgcgggc ggagatactc cttgaacgaa
      361 ctgatcagca tgtggttttg ataattgagg acaatggagt tggctttgat acggacgctg
      421 tacctcaaca tgattcgaga tgggggctcc tgggtatgcg agaacgtgga aagctgttgt
      481 cgggaaccgt agaggtcgaa tcaagtccga atcagggaac aactatctac gttcgcattc
      541 cgctcatgaa taagacagac gaaggatctg aggatgaata agattcgaat tctactcgca
      601 gaggatcatg tcacggtgcg agaaggtttg aaaatgttga ttggacgcga gcccgacatg
      661 gaaatcgtcg gcgaagccgc tgatgggcgc gaagcaattg aaagagcaag cgaactacgc
      721 cctgaaattg ttgtaatgga catttcgatg ccgggcttga acggactcaa aggtacccgg
      781 aaactaaaag agctgtatcc cgaaattcac gtcattgctt tgacgcggca taaagaaagc
      841 ggatatgtcc aggaactctt gctggccggt gcttccggct atgttctaaa gcaaagttcg
      901 tcagatgagt tgattagagc cattcgcgca gtgcattccg gtaagagcta tcttgatccc
      961 gcagtcacat ctcaagcatt gaacaagtcg tcgcctggag acctcaaagt agccatttct
     1021 agttc
//
LOCUS       DATCGC010000354         1001 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_271247, whole genome shotgun sequence.
ACCESSION   DATCGC010000354 DATCGC010000000
VERSION     DATCGC010000354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1001
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271247"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            477..794
                     /locus_tag="VIJ87_03390"
     CDS             477..794
                     /locus_tag="VIJ87_03390"
                     /inference="COORDINATES: protein motif:HMM:NF015602.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlaG"
                     /protein_id="HEY5443512.1"
                     /translation="MSQEILRPHRRLLAGCLPQPSHPVLPKEKPPVNQVIEKATRKFQ
                     DALLPVNSHLHLEVNAVTHTVTVKVINDQSGEVIRQIPSEELMGLAVSMENGEGLLVN
                     RRI"
BASE COUNT          249 a          273 c          271 g          208 t
ORIGIN      
        1 caaccatagt ctgtcgtagc caatatagga gataccgacg aggccggaca cctaccagca
       61 cgtacgccaa agggtagcgg tcgtcgtgaa accgacgcag acaagtccct cacacatcca
      121 gtactaccgc ttatattccg ataaagaaga catggaacac catcccatca ccgctgtgga
      181 cctgtgttgc aagacctgta gtctcgtacg ggtctctgac ggtctgcatg gttcgaggca
      241 atgtacacat cgatgacttc gcggctgctc tgttcgctaa tacgccgcgt caccgggacg
      301 gcttcctctc ctcctcacgc cttaggtttc tccccattcg cgagcattga tgctcaatgg
      361 gttggaggta gttcagttct tcggggcgga tgccgacacc acagatagca aggtagatat
      421 gtagcttgga taaaggtgat gtatgagcga ccgtgccatc acaaagctca gtgccaatga
      481 gccaagagat tctgaggcca cacaggcgtc ttctggctgg gtgcctgcca cagccaagtc
      541 atcccgtgct gcccaaggag aagcccccgg tcaatcaggt catcgaaaaa gcgacgcgga
      601 aattccagga cgcattgctc cctgtcaatt cgcatctcca ccttgaagtg aacgcagtga
      661 cccataccgt gacggtcaaa gtcatcaatg atcaatcagg agaggtcata cgccaaatcc
      721 cctccgagga gctgatgggg ctcgcggtat caatggagaa tggggaaggc ctgctggtga
      781 atagacgcat ttaactgcga gcatagtcca cagcgttcgt gtgtgagaaa ggccacgtcc
      841 cacctaccaa gatagttttc acttccgcta cacgattcgc gttgtgtttc tgggggcagg
      901 tcgctggatc aggaagaagc gtcaagccat acacgcccga ggaaccacaa ggcagggagg
      961 agcaagtcgg tgcagtcacg aatcattgtg ctggatgatg a
//
LOCUS       DATCGC010000355         1332 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_438171, whole genome shotgun sequence.
ACCESSION   DATCGC010000355 DATCGC010000000
VERSION     DATCGC010000355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1332)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1332)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1332
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_438171"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            435..1160
                     /locus_tag="VIJ87_03395"
     CDS             435..1160
                     /locus_tag="VIJ87_03395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443513.1"
                     /translation="MRAATSPFGAGRLDYNFRIFSITHVLAGDSTPRADSSLVVGNLI
                     ATLSVSPSRNTVLARVESDSVTVTAGSGTSVPISPGELFLFTIDTRTGQVVQTNRQTT
                     PDCGSGISDSSPIYGREVLPNISIPATQAWADTVHTSMCRGGALLTVTRIASYTHLQS
                     PDSVKQLLRLTQFHIAGTGRQWDQKIEVSGEGSSLDTLRLSGFPIRLTQITGRSQVRF
                     VFRTQLRVQEFLQTSTTRIALRS"
BASE COUNT          333 a          357 c          330 g          312 t
ORIGIN      
        1 caactggagc aaggccaaat aggtggcgag ggacagtcct tcccgatcaa gacgccacgg
       61 gtaggctgct agagagcgta ggcgactgcg ctccgagaga aatgactatc cggatgcatc
      121 gaaaggtgtg cccgacagaa cccggcttat aggtcagtta cgccgcagaa atgttccagc
      181 cctctaccct tgttgataaa gtgtagaggg ctgaactcat tcgcacatag gcttcagcag
      241 tacttaaatg ccgacctgga acgccacatt tacgttctct tgctgacaca atgcagtgcc
      301 taacgcgtta ccagatagag attctgattc cggctctttt tttggctgga tgtactacta
      361 ccagaccgtc gccagctcca gaacggccag accctcaagt tcagatgccg attgggggtg
      421 attcttcccc atcagtgaga gcggctacga gtccgtttgg tgcagggcgc ctcgattaca
      481 attttcggat tttctccata acacatgtac tggctggtga ttcaactcct cgagctgact
      541 caagtctcgt cgtaggaaat cttatagcaa cactgtccgt tagcccaagc cgtaatacag
      601 tactcgcacg tgtagagtct gattctgtca cagttactgc aggtagtggg acttcagtac
      661 ctatctcgcc gggtgaacta ttccttttca ctatcgatac ccggactgga caagtcgtgc
      721 aaaccaatcg acaaacaacg cccgattgtg gaagcggcat ctcagatagt tcgcccatct
      781 atgggcgaga ggtgctacca aacatcagca taccagcgac acaggcatgg gcggacacgg
      841 tgcatacatc gatgtgccgt ggtggagcac ttctaacagt cactcgcatt gcgtcatata
      901 cgcatctcca atcacctgat tctgtcaaac agctactacg cttaacccag ttccacattg
      961 ctggaactgg acgccagtgg gatcagaaaa tcgaagtctc tggtgagggt tcatcactgg
     1021 acactctacg cttaagtggt ttcccaatcc gattaacaca aataaccgga cgctcgcaag
     1081 tgcgcttcgt attccggacc cagctccggg tgcaggagtt tctccaaacc tcaacgacgc
     1141 gtatagcgtt acgtagctaa tgaatacgcc taacaagcgc gctccttgct cgagttaatc
     1201 tgtttcgcgg acacttcatt tgctcaagct tcagagcaga ggtatgaaat gacgaaacgg
     1261 aatgagcatg aggagagcat tgcaccacgt gcaactggtc agcccacttg tgcagctggt
     1321 tgaccttgcg ga
//
LOCUS       DATCGC010000356         1487 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_71804, whole genome shotgun sequence.
ACCESSION   DATCGC010000356 DATCGC010000000
VERSION     DATCGC010000356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1487)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1487)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1487
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_71804"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..751
                     /locus_tag="VIJ87_03400"
     CDS             <1..751
                     /locus_tag="VIJ87_03400"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY5443514.1"
                     /translation="GAAIINESLAQRYFQREDPIGKVITHIGANQNDGDPERWQIVGV
                     VSDVHHSSLTKAAAPEIYLPFQQNSWSWGNFLVRTTVPPASLADAFRREIRSTDRSVP
                     ISDVRPLTEAISETVTQPRFYTLLFGLFGGIGLLLTMTGVYSLISYTVAQRTQEIGIR
                     MALGASRQHVVRMILGQGFGLAVIGAILGLAVSFWLTRLLVKLLFEVRPTDLMTFALA
                     TSVLLVAALLASFIPARRATKVDPMIALRIE"
     gene            860..>1487
                     /locus_tag="VIJ87_03405"
     CDS             860..>1487
                     /locus_tag="VIJ87_03405"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5443515.1"
                     /translation="MDNLLSDIRYAIRNLIKRPSFTVIAVVTLALGIGANSCIFSAIN
                     ALLLKPLPIPNQDRVMTIWDKNPSHGWDHNEVTMANYLDLRAQNQSFDPLALYRWWSA
                     NLTGLETPERIQGFLVTGNFFDAIGVKPMMGRGFFEEENQPGKDAVAVITYSLWQRHF
                     GADPNIINKTITLNTISRTIVGVMPPRFNFPKGAEVYAPLALTPELTRN"
BASE COUNT          345 a          379 c          382 g          381 t
ORIGIN      
        1 tggagcagcc atcattaacg agagtttggc ccagcgttat tttcagcgcg aagatccgat
       61 cggcaaggtc atcactcaca ttggcgcaaa tcaaaacgat ggcgatcccg agcgctggca
      121 gattgtcggt gtcgttagcg acgttcatca cagcagtttg actaaagccg ctgctccgga
      181 gatttatctg ccttttcaac agaacagttg gtcctgggga aatttccttg tgcggacgac
      241 cgtgccaccc gccagtttgg ccgacgcttt tcgacgtgaa atcaggtcga cggacaggag
      301 tgtgccgata tcagacgttc gtcccttaac cgaggcgatt tctgaaacag tcactcaacc
      361 tcgtttctac acacttctct tcgggctttt cggcggtatt ggtttgttac tgacaatgac
      421 cggtgtctac agcttgatct cttataccgt cgctcaacga acacaggaaa tcggaatacg
      481 catggccctc ggtgcatcac gtcagcacgt cgtgcggatg attcttggac aagggtttgg
      541 gctagctgtc attggcgcaa ttcttgggtt agcagtctcg ttttggctaa caagacttct
      601 cgtgaagctc ttgtttgaag tgcgaccgac tgacctgatg acgtttgcgc tggctacatc
      661 tgtgctgtta gttgcggcgt tgctagcgag cttcatccca gctcgtagag caacaaaagt
      721 agatccaatg attgcgttgc ggattgagtg agtgtcacag acttcagtct gtggcagcaa
      781 agtttagaac gactcttgag cttgaaagta ctcgttaagg taagaacata gactggattg
      841 tgtagcacca ggagccagta tggataacct cctcagcgac attcgatatg cgatacgcaa
      901 tttgattaag cggcccagct ttaccgtgat cgcagtggtt acgctcgcgc tcggtatcgg
      961 ggccaacagt tgcatcttca gcgcgatcaa tgcgctcctg ctgaaacctc tcccgattcc
     1021 aaatcaggat cgcgtcatga cgatctggga caagaatcca agtcatggct gggaccacaa
     1081 cgaggtaacg atggccaatt acctcgactt gcgcgcgcag aatcagtcgt tcgacccact
     1141 cgcactttat cgttggtgga gtgcgaacct cactggcctc gagactcctg agcgcatcca
     1201 gggatttctt gtaactggaa atttcttcga tgccattggc gtgaagccga tgatgggtcg
     1261 tggtttcttt gaagaagaaa accagcccgg taaggacgct gtcgctgtca ttacctacag
     1321 tctctggcaa cgtcactttg gggccgatcc gaacatcatt aataagacca taaccctgaa
     1381 tacgatttcg agaaccattg ttggcgtgat gccgccacgc ttcaactttc cgaaaggtgc
     1441 tgaagtctat gctcctctcg cattaacgcc agagttaact cgcaatc
//
LOCUS       DATCGC010000357         1036 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_71811, whole genome shotgun sequence.
ACCESSION   DATCGC010000357 DATCGC010000000
VERSION     DATCGC010000357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1036)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1036)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1036
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_71811"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1036
                     /locus_tag="VIJ87_03410"
     CDS             <1..>1036
                     /locus_tag="VIJ87_03410"
                     /inference="COORDINATES: protein motif:HMM:NF028442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyl hydrolase"
                     /protein_id="HEY5443516.1"
                     /translation="VTSSETWTWLHSPSFRATPLDMKAEADIHFLQGINQLIGHGWPY
                     SAPGVEYPGWRFYAAAVFNDKNPWFIAMPDLAKYMQRVSFLMRQGQPANDVALYLPND
                     DGWGHMLPGNPHLIDVLREHVGADLMPAIFEAGYNLDFFDDDSFKQVGRVDNGSLVLG
                     QNKYKVIILPGVEHIPLDTYRKFEEFVRGGGVLIATKSTPKLVPGFKATQQDNDEIAK
                     ISRQLFTDQTAKSQLVTDEKQKLGVTLNKLLPPDIEYSMPATDIGFIHRRTSETDIYF
                     VANTTNAEYKSKVRFRVSGISGEVWNPFDGSVRDAGGESGSSSYALDLNLGPYESRVF
                     IFSKRRLPSS"
BASE COUNT          250 a          275 c          274 g          237 t
ORIGIN      
        1 cagttacgtc gtcggaaacg tggacgtggt tacattcgcc ttcgttccgc gccacgccgc
       61 tcgacatgaa ggccgaagcc gacattcact tcctccaggg aatcaatcag ctaatcggac
      121 acggttggcc ttactcagct ccgggtgtgg agtatccagg ttggcgtttc tacgcagcag
      181 cagttttcaa cgacaagaat ccctggttca ttgcgatgcc cgacctggcg aagtacatgc
      241 agcgtgtcag tttcctgatg cgacagggcc aacctgccaa tgacgtcgcg ctttacttgc
      301 cgaacgatga cggctggggt cacatgctgc cgggcaatcc acatctgatc gacgtgctcc
      361 gtgaacatgt tggcgcggat ctgatgccag caatttttga ggctggctac aatctggatt
      421 ttttcgacga cgattcgttc aagcaagttg gcagagtcga taacggctca ctggtcctcg
      481 gtcagaacaa atacaaagtc atcatcctgc cgggcgtcga acatattccc ctcgacacct
      541 atcggaagtt tgaagagttc gtgcgcggtg gcggagtact gatcgccacg aagtcgacac
      601 caaagttggt gccgggcttc aaagccacgc agcaagataa tgatgagatc gcaaagatct
      661 cccgccaact gtttactgat caaaccgcca agtctcaact ggtaactgac gaaaagcaga
      721 agctgggcgt tacgctcaac aaactcttgc cgccggatat tgagtattcg atgccagcta
      781 ctgatatcgg attcatccat cgcaggacaa gcgaaaccga tatttacttt gtcgcgaaca
      841 ccacgaatgc agagtacaaa tcgaaggtac gctttcgcgt gtcaggtata agcggagaag
      901 tgtggaatcc ttttgatgga agcgttcgag acgccggcgg tgaatcaggt agcagttcgt
      961 acgcgcttga cctaaacctt ggcccgtatg aatcgcgcgt cttcattttc tccaaacgca
     1021 ggttgccgtc gagcga
//
LOCUS       DATCGC010000358         1203 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_337742, whole genome shotgun sequence.
ACCESSION   DATCGC010000358 DATCGC010000000
VERSION     DATCGC010000358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1203)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1203)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1203
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_337742"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            25..>1203
                     /locus_tag="VIJ87_03415"
     CDS             25..>1203
                     /locus_tag="VIJ87_03415"
                     /inference="COORDINATES: protein motif:HMM:TIGR01891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004180 - carboxypeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEY5443517.1"
                     /translation="MRGSLLRIAVIVLLFCSLFVSSSTTIVRNSSAAQDYKTQVVRDV
                     DEMAKQTQVMIDTVFSFGELGFQEFETSKYLTGILEKEGFKIERGIAGIPTAWVATWG
                     SGKPVIALGSDIDCIPQASQKPGVAYHDPLVEGAPGHGEGHNSGLPLHITAAIAVKKQ
                     MERAKLPGTIKIWPGVAEELVAGKAFFVRDGLFKDVDVVLFAHVGNNLQVSWGQAAAT
                     GLVSVEYTFKGESAHAAGAPWLGRSALDAVELMDTGWNFRREHLRIQQRSHYVITNGG
                     DQPNVVPRLASVWYYFRELDYEHIKQMREIGDQMAQGAALMTNTEVSSRVLGCAWPQH
                     FNKTIAEAMYENIKQVGLPQWSDADQTLAKALQKELKMREQGLSTELGKLTGPADEQS
                     I"
BASE COUNT          297 a          315 c          326 g          265 t
ORIGIN      
        1 aaatacaaac ttaaggagcc tcccatgcgc ggatccctgc ttcgcatcgc agttatcgtt
       61 ctgctgtttt gctcgctgtt tgtcagcagt tccaccacca tcgttcgcaa ctcttcggca
      121 gcacaagatt acaagaccca agtcgtccgc gacgtcgatg agatggccaa gcaaacgcag
      181 gtgatgatcg acactgtttt tagctttggc gaactcggct ttcaggagtt tgagacttcg
      241 aagtacctga ccggcatact cgaaaaagaa ggtttcaaga ttgaacgcgg catcgcgggc
      301 attcccacag cctgggttgc aacgtggggc tccggcaaac ccgtcattgc actcggctcc
      361 gacattgatt gcattcctca ggcgtcgcaa aagccaggtg ttgcctatca cgatccttta
      421 gtcgaaggag cgccgggcca tggtgaaggt cacaactccg gtttgccgtt acatatcacc
      481 gcggcaattg cagtcaagaa acaaatggaa cgtgccaaac ttcctggcac gatcaaaatc
      541 tggccaggtg tcgccgaaga attggttgcc ggcaaagctt tcttcgtccg agatggtctc
      601 ttcaaagatg tcgatgtagt tttattcgcg catgtcggca ataacctaca ggtgtcgtgg
      661 ggccaggcag cagcgacagg actcgtttcg gtcgaataca ccttcaaggg tgaaagcgcg
      721 catgcggccg gcgcaccgtg gctcggacgg agcgctctcg atgctgtgga attgatggat
      781 acaggctgga actttcgccg tgaacatcta cgcattcaac aacggtcaca ttatgtaatt
      841 accaacggcg gcgaccaacc taacgtcgta cccaggctcg caagtgtttg gtattacttc
      901 cgcgaactcg attacgagca catcaagcag atgcgtgaga ttggcgacca gatggcgcag
      961 ggtgctgcgt tgatgacgaa caccgaagtc agttcgcgcg tgcttggttg cgcatggcca
     1021 caacatttca acaagactat cgctgaggct atgtacgaaa acattaagca ggtcggactc
     1081 ccacaatgga gtgatgccga ccaaaccctg gccaaggctc ttcagaaaga gttgaagatg
     1141 cgcgagcagg gactaagcac agagctgggt aagttaaccg ggccggctga tgaacaatcg
     1201 att
//
LOCUS       DATCGC010000359         1369 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_438238, whole genome shotgun sequence.
ACCESSION   DATCGC010000359 DATCGC010000000
VERSION     DATCGC010000359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1369)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1369)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1369
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_438238"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            284..>1369
                     /locus_tag="VIJ87_03420"
     CDS             284..>1369
                     /locus_tag="VIJ87_03420"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HEY5443518.1"
                     /translation="MSNERIAELFNVRSHNPSFFSVKESGACCGELLDFCIPVNLHFP
                     PLAMVEAIHRQLPDILRYYPDYADVHAQNIGEMMQLDARTLVPCNGSTEIITRLCQDA
                     RGPIVTSIPTFSRWTDLPGELKVPLHMIQRKRERNFRLEVDEIVERCRTVKAQTLVIS
                     NPNNPTGAWLTLDQIKQLTFALEDLDSIIIDESFLDFSGLESAASFAAIAPNLIVVKS
                     MGKSLGWHGVRLGYAATSPERAKQLRSELPLWNVNGLAAFILKTVTNFKSEYQASFGL
                     VAQDRIYMSEQLASVPSLKLYPSKANFLFAELPQCISGRGLRDRLLRNHAVLVRECSN
                     KIGSSEHYLRLAVQRREAVDVLVRALTL"
BASE COUNT          347 a          346 c          338 g          338 t
ORIGIN      
        1 tgagtaatgt gtagtgtgaa gaggcaggcg aggacgcctg cggtcccaga agagcattcg
       61 cttttgatcg atggggatta ctaaagggta ccgatctaat cgaagcgatt cacagccagc
      121 agcggcagca aacgccccgc aaaagatctt tcctatcttt acgcaagttt cgtctactca
      181 cttcgttcca ctcttaacta aatactctcc tccatttcgc gttgcccaac ccaagtctgg
      241 aagaaaccga cgacttgcta cgtcgaacga atggagtgtg tttatgagta acgaaagaat
      301 cgctgaacta ttcaacgtac gttcgcacaa cccatccttt ttttcggtga aagagagcgg
      361 cgcctgctgc ggcgagctct tagatttttg tatcccggtc aacctgcact tcccaccctt
      421 agctatggtt gaggcgattc accgtcagct cccggacata cttcgatact atcctgacta
      481 tgcagatgtt catgcacaaa acatcggtga aatgatgcaa ctggacgcgc gtacgcttgt
      541 gccatgcaac ggctctactg agatcattac caggctctgc caggatgcgc gtggaccgat
      601 tgtcacttca attccgacat tcagccgctg gactgatttg cctggcgaac taaaagttcc
      661 gctgcacatg attcaacgca agcgtgaacg gaacttccgg ctggaagtcg acgagatagt
      721 ggaaaggtgc cgaaccgtaa aggcgcaaac actggtcatc tcaaatccaa ataacccaac
      781 cggcgcatgg ctcacattgg atcagatcaa gcagctaaca tttgccctgg aagatcttga
      841 ttcgatcatc atcgatgaat cgtttctcga tttttctgga ctcgagagcg ctgcatcttt
      901 cgctgccatc gcaccaaatc tgatcgtcgt gaaaagcatg ggaaagtcac tgggctggca
      961 tggagtaagg cttggttatg cagcgacgag tccagaacgc gctaagcaat tacggtccga
     1021 actaccgttg tggaacgtca acgggctggc tgcattcatc cttaagacag ttacgaattt
     1081 caaatcagag taccaagcga gttttggatt ggttgcacag gatcgtatct acatgtcaga
     1141 gcaactcgcg tcagtacctt cgttgaaatt gtatccttca aaggctaatt ttctatttgc
     1201 agagttgccc caatgtattt ccggccgagg tctgcgcgat cgtttactaa gaaatcatgc
     1261 ggtactcgtt cgcgagtgca gcaataagat cggatcctcc gaacattacc tgcggctcgc
     1321 ggtgcaacgg agagaggcgg tggacgttct agtgagggcg ctaacgtta
//
LOCUS       DATCGC010000360         1522 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_138185, whole genome shotgun sequence.
ACCESSION   DATCGC010000360 DATCGC010000000
VERSION     DATCGC010000360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1522
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_138185"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..677
                     /locus_tag="VIJ87_03425"
     CDS             <1..677
                     /locus_tag="VIJ87_03425"
                     /inference="COORDINATES: protein motif:HMM:NF019982.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY5443519.1"
                     /translation="KLREQPVTTFVKHPVTGKRTEIHLTERMFADAVRVMMYREPSSH
                     EVPFLIEQALAGDFNPFAEAGLRANRGIYSGGSMGLHYCITCNEFVNRIHSEEVESAT
                     RGLFLGSWRVRAQMAACKEWPKTKLPDDFFEPFQLDKPTVLVWGTEDPASAPADGQEE
                     ANAYMPNAIQVLVPGAAHTPENECTRAIRHQPFRTGTTDGLDINCVGKLKPLPFKLPV
                     TEHGAK"
     gene            725..>1522
                     /locus_tag="VIJ87_03430"
     CDS             725..>1522
                     /locus_tag="VIJ87_03430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443520.1"
                     /translation="MNADSLTLKLKIRSVIWKENRIRITKEQTETKVMNKYRFASFRS
                     FGLAVMFQGIVSLTAYAGIKHDYGTYPVPPAPALPAAGGIVIDPTFETRIMRLTDAND
                     GPNCINAYSYWPTFNINSTRLMVHNGIAPLLYQFDPVQFKILSKAVWDTPTPIGGSIG
                     WEDAIWSGSDPDVIYAHDNLGMHLWAYNVATKTYTQVFDLTDQYNRGDYLWQMSKAVT
                     TDNVFAFTRRDARYNVVGYLVWRRDRNQVVYDVTTNQLDEVQLDKSGR"
BASE COUNT          384 a          397 c          393 g          348 t
ORIGIN      
        1 ggaagctacg cgagcaaccg gttacgacct tcgtaaaaca tccggttacc gggaagcgga
       61 cggaaattca cttaactgaa cgcatgttcg ccgacgcggt tcgggtcatg atgtaccgcg
      121 aaccaagtag ccacgaagta ccgttcctga tcgaacaggc actcgctggg gatttcaatc
      181 cttttgctga ggccggcctt cgcgcaaatc gcgggattta ttctggtgga agtatgggac
      241 tgcattactg catcacctgc aacgaattcg tgaaccgaat tcattccgaa gaagttgagt
      301 cggcgactcg aggtctcttc ttgggatcgt ggcgagttcg cgcacaaatg gctgcttgta
      361 aagaatggcc gaaaacaaag ttacccgacg attttttcga gccgtttcag ctcgataagc
      421 caactgtgct cgtctggggt acggaagacc cggcatcagc gccggctgac ggacaggaag
      481 aagcaaacgc ctatatgccg aatgcaatcc aggttcttgt gcccggcgca gcccacactc
      541 cggaaaatga gtgcacccga gcgatcaggc atcagccctt tcgcaccggg acgacggacg
      601 gtttggatat caattgcgta ggcaaattaa agccgttgcc atttaaactt cctgtgaccg
      661 agcacggagc gaagtaactg cctcatttca tgatctttca agcgaatcga tcagcggaaa
      721 tgagatgaac gcagactcct tgaccttgaa actgaaaatt cgatctgtaa tctggaagga
      781 gaaccggatt aggattacca aggaacaaac ggaaaccaag gttatgaata aatatcgctt
      841 cgcgtcattt cgatctttcg gactagcagt catgtttcaa gggatcgtgt cgctgactgc
      901 ttacgcaggg attaaacacg actacggaac ctatcctgtg cctccagctc ctgctttgcc
      961 cgcggcggga gggatagtta tcgatcctac ttttgaaacc agaatcatgc gcctgacgga
     1021 cgccaatgac ggcccaaatt gcatcaatgc ctactcctac tggcctacct tcaacatcaa
     1081 tagtacgcga ctcatggttc ataacgggat cgcgccgctt ctttaccagt tcgatcccgt
     1141 tcaattcaaa atcctgagta aagcggtctg ggacactccc accccgattg gcggatcgat
     1201 tggttgggag gatgcgatct ggagcgggag tgatcccgat gtgatttacg cccacgacaa
     1261 tcttgggatg catctatggg cttacaacgt agctaccaag acctacaccc aggtgttcga
     1321 ccttaccgat caatataatc gtggggatta cctgtggcag atgagcaagg ccgttacaac
     1381 tgacaatgtg ttcgccttta cccgtcgcga tgcgcgctac aatgtcgtcg gttatctcgt
     1441 ctggaggcgt gatcgcaatc aagtcgtcta cgacgtgacc accaatcagc tcgacgaagt
     1501 ccagctcgat aagtccggga ga
//
LOCUS       DATCGC010000361         1557 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_7145, whole genome shotgun sequence.
ACCESSION   DATCGC010000361 DATCGC010000000
VERSION     DATCGC010000361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1557)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1557)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1557
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7145"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(22..1107)
                     /gene="serC"
                     /locus_tag="VIJ87_03435"
     CDS             complement(22..1107)
                     /gene="serC"
                     /locus_tag="VIJ87_03435"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004648 -
                     O-phospho-L-serine:2-oxoglutarate aminotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HEY5443521.1"
                     /translation="MTERIFNFSAGPAILPVPVLEEAQRDMLSLPGVGMSVMEISHRS
                     KTFDAIIQGADSGLRELLGIPNNYQVLFLQGGASLQFSMIPMNFLPSDGTADYIITGS
                     WGKKALKEAKKVAGVNVAATMADGGFTRVPAQDELTLNSQAAYVHLTTNETIEGVEWK
                     HQPEVGDVPLIADASSDILSHQIPVDKYALIYAGAQKNMGPSGVTLVIVRDDLLSRIP
                     DGLHTMLDYRTHVENKSLYNTPNTWGIYIINLVCKWLKEKGGLAAMERENEEKAKLLY
                     TAIDASSFYRGHADADARSIMNVTYRLPSEELEKKFTAEATAQGLDGLKGHRSVGGIR
                     ASIYNAFPREGVEALVSFMKEFERKNG"
     gene            complement(1244..>1557)
                     /locus_tag="VIJ87_03440"
     CDS             complement(1244..>1557)
                     /locus_tag="VIJ87_03440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443522.1"
                     /translation="KAFVLSFSEALSEENRPFGVRVMALCPGVTETNFFEAAQMGRPP
                     MRGVQTAEEVVDTALRGLRRRKGVIVSGWLNRVMVVAERFVPRAVVLRITGKALRQRF
                     E"
BASE COUNT          389 a          453 c          342 g          373 t
ORIGIN      
        1 caagctaaag cttatcggac atcacccatt cttcctttca aattccttca tgaacgaaac
       61 cagcgcctcg actccctcgc gcggaaatgc gttgtagatc gaagcacgga tgccgccaac
      121 tgagcggtga cctttcaatc cgtccaaccc ctgggcagtc gcctccgcgg tgaatttctt
      181 ttcgagttct tcagatggca agcgataggt aacattcata atggaccgag cgtcagcatc
      241 cgcgtggcct cgatagaaac tcgacgcgtc aatggccgta tacagcaact tcgccttctc
      301 ctcgttttcg cgctccatcg cggcgagccc acctttttcc ttcagccatt tgcagacgag
      361 gttgatgatg taaatgcccc acgtgttcgg tgtgttatag agcgatttgt tttccacgtg
      421 ggtacgataa tcgagcatcg tgtgcaaacc atcaggaatg cgcgacaaca aatcatcacg
      481 cacgatcacc agcgtgactc cgcttggtcc catgttcttc tgggcgcctg cgtaaatcaa
      541 tgcgtactta tcaaccggga tctgatgcga aagaatatct gacgatgcat cagcaatcag
      601 cggaacgtcg ccgacttcag gctggtgttt ccattcaaca ccctcgatcg tttcgttagt
      661 tgttaagtga acgtacgcgg cctgcgagtt aagcgtgagt tcgtcctgcg ctggaacacg
      721 cgtaaagcca ccgtcggcca tcgtcgccgc cacgttgaca ccagcaacct tcttcgcttc
      781 cttaagagct ttctttcccc aactcccggt gatgatgtag tcggcagttc catctgaagg
      841 caaaaagttc atcggaatca tcgagaactg aaggctcgcc ccaccttgaa gaaacagaac
      901 ctggtaattg ttcgggatac caagcaactc gcgaagtcct gaatccgcgc cttgaataat
      961 tgcgtcaaat gttttcgaac ggtgactgat ctccatcacc gacataccga cacccggcaa
     1021 actcaacatg tcgcgctgag cttcttcaag aaccgggaca ggtaaaattg ccggaccagc
     1081 actaaagtta aaaattcgtt ccgtcataaa aagggcctcc aaccattttg tacttggtac
     1141 ttggtgcttt gttcgttaat tccaggggta gctaaacttc gagactcaca atgcaacaca
     1201 aaccaagtac taagtccaaa gcactaagct caaagtccag tgctcactca aacctctgtc
     1261 gcaaagcttt cccagtaatc ctcaatacca cagctcgcgg tacaaatcgt tcggcgacca
     1321 ccatcacgcg attgagccac cctgagacaa tcacgccctt tcgacgcctg agtcctctca
     1381 aagcagtgtc gacaacttct tccgctgttt gaactcctcg catcggtgga cgtcccatct
     1441 gcgccgcttc gaaaaaattg gtctcggtta cgccaggaca caacgccatc acgcgtacac
     1501 caaacggtct gttctcttct gataatgctt ctgaaaacga aagcacaaac gctttgg
//
LOCUS       DATCGC010000362         1330 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_271362, whole genome shotgun sequence.
ACCESSION   DATCGC010000362 DATCGC010000000
VERSION     DATCGC010000362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1330)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1330)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1330
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271362"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1330)
                     /locus_tag="VIJ87_03445"
     CDS             complement(<1..>1330)
                     /locus_tag="VIJ87_03445"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5443523.1"
                     /translation="GGSRWRVLRLVLTESLLLGLLGGATGLLFATWIVRWMTSAKPLN
                     TIGFWTQYAQTFDYFSVSFDWSLLTFNFVLALLVGSLFGLAPAWAASRPRLNELLKHE
                     MGSTHAGFRSLRRFTLRGSLIATEIALSLVLLAGAGLLLKSFARISNEKLGFEPKGVI
                     TTSADVSRKPLSFYEQLLDRIRNLPGVDKASLSLVTPLSGTHWGGDLEFEGQEIEGSR
                     NGADFNVVTPEYFETLLIPTLRGRTFTPNDRIGATRVVVVSREFAARYWPGQDPLGKR
                     LKTPYRDSYGSQNSWIEVVGVVDDVKYGGVDETPEPALYLPAWQPLGSTEAVSLGPAS
                     ISIRSSGDQSLLLSAIQREVRELDKSVPMFDSTSMKERAARVTSRYRYTTLFVSLFAL
                     VAVLLSATGTYGVMSFVVAANTRELGIRMALGAQRSEILKLVVGSSLIILV"
BASE COUNT          351 a          387 c          308 g          284 t
ORIGIN      
        1 gacgaggata atcaagctac taccaacaac taacttcaga atctctgagc gttgtgctcc
       61 gagcgccatc cggatcccga gttctcgtgt attggctgca accacaaagg acatcacgcc
      121 gtaagtgcct gtcgccgata acaagaccgc gaccagcgca aacaagctca caaacaaggt
      181 tgtgtaacga tatcttgagg taactcgcgc ggcccgttcc ttcattgagg tgctgtcgaa
      241 catcggaaca ctcttgtcca actcacgcac ctcacgctga atagcactca acaacaacga
      301 ctgatcgccg gaactgcgaa tcgaaatcga tgccggccca agtgaaacag cctcagttga
      361 tcccagcggt tgccaggctg gaagatacag cgcgggttcg ggtgtctcat caacgccacc
      421 gtacttcacg tcgtcgacaa cacccacgac ttctatccag gaattctggc tgccatacga
      481 gtcgcgatat ggagtcttta gtcgtttgcc aagaggatct tgtccgggcc aatatcgagc
      541 agcgaactca cgactcacaa ccaccacacg cgttgctcca atccgatcgt ttggagtgaa
      601 agtccgtccc ctgagcgtcg gaatcaacaa cgtctcgaaa tactcgggtg taacaacatt
      661 gaagtctgca ccattcctgg agccttcaat ctcttgtcct tcgaactcca ggtcgccgcc
      721 ccagtgagtc ccacttaaag gtgtgactag tgagagactg gctttgtcta caccaggcaa
      781 attccttatt cgatcaagta actgttcata gaatgacaat ggtttccggc tcacatcggc
      841 gctggtggta ataacgcctt ttggttcaaa gccgagtttc tcgttcgaga tccttgcgaa
      901 acttttcagc agcaacccag cgcccgcgag taacacgagc gacaacgcga tttccgtggc
      961 gattagactg ccgcgcaacg tgaaccgacg aagtgaacgg aagcccgcat gggtactccc
     1021 catttcatgc ttcaacaatt catttagtct cggtctcgac gccgcccatg ctggcgccaa
     1081 accgaaaagg gatcccacca acagtgctaa tacaaaattg aatgttagga gcgaccaatc
     1141 gaagctcaca gaaaagtaat cgaaggtttg cgcatactgt gtccagaacc cgatcgtatt
     1201 caacggcttt gcgctggtca tccagcgtac tatccacgtt gcaaacaaca atccggtggc
     1261 gcctccaagt aaaccaagca acaggctttc agtgagaact aatcgcagga cacgccaacg
     1321 cgaaccgcct
//
LOCUS       DATCGC010000363         1282 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_438305, whole genome shotgun sequence.
ACCESSION   DATCGC010000363 DATCGC010000000
VERSION     DATCGC010000363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1282)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1282)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1282
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_438305"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..829
                     /locus_tag="VIJ87_03450"
     CDS             <1..829
                     /locus_tag="VIJ87_03450"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY5443524.1"
                     /translation="VSMGEQAAHIGAANLGERIPVPEHTHELGRLAEIFNDLLARLDR
                     SFAEQKRFMADASHELRTPVAVILGESEVALSQPREITEYQESLNIMHDEGRRLTRMV
                     EDLFTLARADSGEYPLVLSDFYLDESVNECVRAVRTLAAKKNLELTYQAPASEIAYRG
                     DEAVISRMFMNVLQNAIKYTPPNGRIDVVLKENCANWELSVSDTGEGIPEPARSQVFE
                     RFFRVDKARSRNGFLNGSGAGLGLSIAKWAAELHGGKIELEKTGATGSTFVVLLPTQ"
     gene            complement(1090..>1282)
                     /locus_tag="VIJ87_03455"
     CDS             complement(1090..>1282)
                     /locus_tag="VIJ87_03455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443525.1"
                     /translation="IPPPLGTLSRCCFAPNSTLYYMTLELRLSKGQLVTPLEQKAEAL
                     LELNKMGRKSEVIEGHLSR"
BASE COUNT          291 a          303 c          376 g          312 t
ORIGIN      
        1 agtttcgatg ggcgaacagg ctgcgcatat tggagccgca aatctgggcg agcggattcc
       61 cgtgcccgaa catactcatg agctgggacg actggctgaa atctttaatg atttgcttgc
      121 gcgactcgac cgttccttcg cggagcagaa acggtttatg gccgacgctt cgcacgagtt
      181 gcgcacaccg gtggcggtga ttctcgggga gtcagaggtt gcgttgtctc agccgcgaga
      241 gattactgaa taccaggagt cgctaaacat catgcacgac gaagggcgtc gtttgacccg
      301 catggttgag gatctattca cgctcgctcg tgccgattcg ggtgagtacc cgcttgtgtt
      361 gtcagatttt tacctggacg aaagtgtcaa cgaatgcgta agagctgttc gcactcttgc
      421 ggcgaagaag aatcttgaat tgacgtatca agcgcctgct tcagagattg cttatcgagg
      481 agatgaagca gtaatcagcc gtatgtttat gaatgtgctt cagaacgcga ttaagtacac
      541 gccacccaat ggacgaattg acgttgtgct caaggagaat tgtgcaaatt gggagctttc
      601 ggtaagcgac accggtgaag gcataccgga gccggcgcgc tcccaagtgt tcgaacgatt
      661 cttccgtgtc gacaaagcga gatcccgaaa cggttttctc aacggcagtg gtgcgggatt
      721 gggattgtcg atcgcgaagt gggctgctga attacacggt ggaaagattg agttggaaaa
      781 gacgggagcg actgggtcaa catttgttgt gctgctgccg actcagtaac cggggctggg
      841 aagggtggaa ggacgtctca gtgggtcgaa caagctggga agggtggcaa gcggaaaata
      901 ggacgccctc aattattgac cccgagcgcg cccccgctga gattcacttg caccagttta
      961 gagtatttga ttggcgactc agcgggggcg cgcttggagt cacagtggtg aggcgtccaa
     1021 tattccgctt gccacccttc ccagcttgtt caatacacag gggtgtcctt gccacccttc
     1081 ccaccttgtt catctactga gatgtccttc gattacctct gacttccttc ccatcttgtt
     1141 caactcgaga agagcttccg ctttttgttc cagaggggtt actaactgtc ccttcgagag
     1201 ccttaattct aacgtcatgt agtacagggt agagttgggc gcaaaacaac atcgagatag
     1261 tgtgcctaat ggaggtggta tg
//
LOCUS       DATCGC010000364         3822 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_438338, whole genome shotgun sequence.
ACCESSION   DATCGC010000364 DATCGC010000000
VERSION     DATCGC010000364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3822)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3822)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3822
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_438338"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1099
                     /locus_tag="VIJ87_03460"
     CDS             <1..1099
                     /locus_tag="VIJ87_03460"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HEY5443526.1"
                     /translation="GKRIYATFAKEGKANVGAFDATTGRETDLTSGNQAVVSVRSVPD
                     ASKFALLISTPTRIGDLYWLDGTSGTPKQLTHVNDELFGKLNLTEPEEIWYTSFDGKK
                     VQTWVQKPPDFDPNKKYPLILNIHGGPHAAYGYIFDHEFQWMAAKGYVVLYPNPRGST
                     SYGQEFGNIIQYHYPGDDYKDLMAGVDEVLKRGYIDDKRLGVTGGSGGGLLTNWTITQ
                     TTRFAAAVSQRDISDWADFWYTADFTLFQPSWFKAPPFEDPEDYKARSPITYITKVQT
                     PLMLILGETDYRTPTGAGGEQMFRALKYRKIPTVMVRFPNETHELSRSGQPWHRIERL
                     QHIVGWFDKWLMGMPKPEYEVSDISTSSGQK"
     gene            1181..1873
                     /locus_tag="VIJ87_03465"
     CDS             1181..1873
                     /locus_tag="VIJ87_03465"
                     /EC_number="5.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047689 - aspartate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid racemase"
                     /protein_id="HEY5443527.1"
                     /translation="MKTLGLIGGIGPESTIEYYRILVARYRERTNGEYPPVIINSINL
                     NRIVEWMTEGEVGKVADYCSKELEKLENAGVDLGALCSNTPHIVFEQIKQRSKIPLVS
                     IVEAAAQNAKTLGLKTVGLFGTRFTMEAPFYPDVFAKAGIKVAIPTADEREFIHLKYM
                     GELLNNNFLTETRAKVLSIVDVMKARNGVEAVVLGGTELPLLLRTDSHNGTLLIDTTR
                     VHVDELIRKLLD"
     gene            1888..3348
                     /locus_tag="VIJ87_03470"
     CDS             1888..3348
                     /locus_tag="VIJ87_03470"
                     /inference="COORDINATES: protein motif:HMM:NF024602.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 140 protein"
                     /protein_id="HEY5443528.1"
                     /translation="MIQATTRFAVLLVVVHFIASLSPNVTAKVPGRLKVSDNHRYLQY
                     DNGQPFFYLGDTAWELIHRLNREEATEYLTDRARKGFTVIQTVAIPPADGLISPNTYG
                     DLPFVDRDPTKPNEAYFQHVDFVVNKAEELGMFVGLLPTWGSYWASGKSIFNPNTARG
                     YGQFLGRRYKDKAIIWILGGDRSIQTDDERAIIDALAAGLESGDGRNHLKTYHPTGPG
                     FSSIKLNGAEWLDFNMFQSSHGAHDHDNGLFVEHDYALNPPKPTLDGEPRYEGMPVGF
                     YFKGTAGIDRFDDYDARQAAYWSVLAGACGHTYGNNNVWQFYSPGAKRETHAGDGVTR
                     PDGALYGEPGGLIGANIPWREAMNHPGALQMGFVRRLMEAIPFKKLVPDNKLILNGTS
                     TGLSKIRAARSSDESFVVVYAPRGESFTLDKSAVKGNRQREFWYDPRYGVSYVFKEQD
                     SAGIQTFTPPTNGRGNDWILVLEDLAAGYPVPGPGK"
     gene            3345..>3822
                     /locus_tag="VIJ87_03475"
     CDS             3345..>3822
                     /locus_tag="VIJ87_03475"
                     /inference="COORDINATES: protein motif:HMM:NF013775.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HEY5443529.1"
                     /translation="MKTKRDLEATIAITNQTLRHVIEKLFPQRQIASASPLPGGLINT
                     NLKIDFHSEHDPVVFRIYRDGDDACRKELALHDLVERKVRVPRILHVESSGFEEVPPF
                     AILEFVEGLTFQQLKRTGELKSIHEAAYSVGETLAAIGTFHFPESGRLVAKDSQLCV"
BASE COUNT         1006 a          992 c          951 g          873 t
ORIGIN      
        1 cggcaaaaga atctatgcca cgtttgccaa agaaggaaaa gcgaatgtgg gcgccttcga
       61 tgcaactact ggtagggaaa cagatctgac atctggtaac caggccgttg tcagtgttcg
      121 ctcagttcca gacgcgtcga agtttgctct tctaatctcg acaccaacgc gtatcggtga
      181 tttgtattgg ttggacggaa cttcaggaac tccgaagcaa ctgacccacg tcaacgatga
      241 actcttcggg aaattgaatc tcacagaacc ggaagagatt tggtatacaa gtttcgacgg
      301 taagaaagta cagacatggg ttcagaaacc acctgacttt gatccaaaca agaagtatcc
      361 gttgatcctt aatatccatg gaggaccaca cgcggcttat ggctacatct tcgatcacga
      421 gttccagtgg atggcggcga agggttatgt agttctttat ccgaatccgc gcggcagcac
      481 tagctacggc caggagtttg gcaacatcat tcaatatcac tacccaggtg acgactacaa
      541 agacttgatg gctggagttg atgaagtctt gaaacgaggc tacatcgacg acaaacgtct
      601 aggcgtaacc ggaggaagcg gcggtggtct tctaaccaac tggacaatca ctcagacgac
      661 gcgttttgcg gcggccgtgt ctcaacgcga catttccgac tgggctgatt tctggtacac
      721 ggctgatttc actctattcc aaccttcatg gttcaaagcg ccgccgtttg aagatccgga
      781 agactacaaa gctcgctcac caatcaccta catcactaaa gtgcagacac cgctcatgct
      841 gatcctcggc gaaacggact atcgcactcc aactggtgct ggaggcgaac aaatgttccg
      901 agcgttgaag tatcgaaaga ttccgacagt gatggttcgt tttccaaatg agactcacga
      961 actatcgcgt tcgggtcaac catggcatcg catcgaacgc ctccaacaca tcgttggctg
     1021 gtttgataag tggctcatgg gaatgccgaa gccggagtac gaggtaagtg atattagtac
     1081 gagcagcggg caaaaatagt aggcagaagg gcaggagcag taggcaggat cagtagcgtg
     1141 ggttctcctg cgcctgctcc tgcttcctgc tcctttcact atgaaaacac ttggtctaat
     1201 cgggggcata ggcccggaat caactattga gtattaccgg atactcgtcg ctcgctatcg
     1261 cgaacggact aacggagaat atccgcctgt cataatcaac agcatcaacc tcaaccgcat
     1321 tgtggaatgg atgactgagg gcgaggttgg taaggtcgcc gactattgct ctaaagagct
     1381 tgagaaactc gaaaacgccg gcgtcgatct cggggcactc tgctccaaca ctccgcacat
     1441 cgtctttgag cagatcaaac aacgatcgaa gatcccgctg gtcagtatcg tcgaagctgc
     1501 agcccaaaac gctaagacgc tcggtttaaa aacagttggc ttatttggca ctcgcttcac
     1561 aatggaagca cccttctatc ccgatgtttt tgccaaagcc gggatcaagg tagcgattcc
     1621 aaccgcagat gagcgcgagt tcatccacct caagtacatg ggtgagcttc tcaacaacaa
     1681 ctttctcact gaaacacgcg ccaaagtact cagcatcgta gacgtaatga aagctcgcaa
     1741 cggagttgaa gcggtagttc tcggtggaac tgaactaccg ctgctactgc gcaccgatag
     1801 tcacaacgga acactcctta tcgacaccac ccgcgtacac gtcgatgagt tgatccgcaa
     1861 gctccttgat tgatcccgga acccgaaatg atccaagcca ccacccgctt tgcagtgctg
     1921 cttgtagtcg tacacttcat tgcaagctta tccccaaacg tcacggcaaa agttccgggc
     1981 cgtcttaagg tttcggacaa tcatcgttat ctgcagtacg ataacggaca gccctttttt
     2041 tatctcggcg atacggcctg ggaactgata caccgactaa accgtgagga agctaccgag
     2101 tacctcacgg atcgcgcgcg caaaggtttt actgttattc aaacagttgc gatccctcca
     2161 gcggatggtc tgatttcacc caatacttac ggcgaccttc cttttgtcga tcgcgatccc
     2221 actaaaccta acgaggcata tttccaacac gtcgatttcg ttgttaacaa agcagaagaa
     2281 ctggggatgt ttgtcgggct tcttcccacg tggggcagtt actgggcatc cggcaaatcg
     2341 atctttaacc caaacactgc acgagggtat ggtcaatttc ttggtcgcag atacaaagac
     2401 aaagcaatca tttggattct cggaggcgat cgatctattc agaccgatga cgagcgagca
     2461 atcattgatg cactggccgc tggactcgaa tccggagacg gtagaaatca tttaaaaact
     2521 tatcacccca ctggacctgg tttctcctca atcaaactca acggcgcaga gtggctcgac
     2581 ttcaacatgt tccagtcatc acatggagca cacgatcacg acaacgggtt attcgtcgaa
     2641 cacgattacg cgcttaatcc accaaagcca accctggatg gcgaaccgcg ttacgaagga
     2701 atgccggtcg gtttctattt caaaggaacc gcaggaatag atcgttttga tgactacgat
     2761 gctcgtcagg ccgcgtactg gtccgtgctc gccggcgcgt gtggtcacac gtatgggaac
     2821 aacaacgtct ggcagttcta cagtccgggc gcaaagagag aaacgcatgc cggtgatgga
     2881 gtaactagac cggacggtgc cttgtacgga gaaccaggag gattgatcgg agcaaacatt
     2941 ccctggcgcg aggcgatgaa tcatcccggc gcattacaaa tgggatttgt gcgtcgacta
     3001 atggaagcta ttccgtttaa gaagttagtt cctgacaaca agctgatcct aaatggcaca
     3061 tcgaccggcc tgtcgaagat tcgagcggcc cgttcaagtg atgagtcatt tgtggtcgtc
     3121 tacgctccac ggggcgaaag ctttacttta gacaaaagtg cggtcaaggg taaccggcaa
     3181 cgcgagtttt ggtatgaccc gcgttatggc gtttcctatg tcttcaaaga acaagacagc
     3241 gccgggatac aaacgttcac cccgccaact aatggtcgag gtaatgattg gatattagtt
     3301 ctcgaagacc tcgccgcggg ctacccggtt cctggcccag gtaaatgaaa acaaagcgcg
     3361 accttgaggc caccattgca ataacaaatc agacgctaag acacgtcatt gaaaaactgt
     3421 ttcctcaaag acagatcgct tctgcatcgc ctctacccgg gggcctcatt aataccaatc
     3481 tgaagatcga tttccattcc gagcacgatc ccgttgtatt tcgtatttat cgtgatggag
     3541 acgacgcatg ccggaaagaa cttgcgcttc atgacctcgt ggagcggaag gtacgagtac
     3601 ccagaatcct tcatgtcgaa tcgagcggct tcgaagaagt tccgccattt gcgattctcg
     3661 aattcgttga gggcctaacg ttccaacaac tgaagcgaac cggcgaactc aaaagtattc
     3721 acgaggccgc ttactctgtt ggtgaaacac ttgctgcaat cggcactttt cactttccag
     3781 agtctggacg actcgtcgcc aaggacagcc agctgtgcgt tg
//
LOCUS       DATCGC010000365         3599 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_470985, whole genome shotgun sequence.
ACCESSION   DATCGC010000365 DATCGC010000000
VERSION     DATCGC010000365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3599)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3599)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3599
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_470985"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..533)
                     /locus_tag="VIJ87_03480"
     CDS             complement(<1..533)
                     /locus_tag="VIJ87_03480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443530.1"
                     /translation="MLARLSLVFAIPGCVSFLMATGSAQTTQYDVLIKNGRIVDGSGR
                     PGYNADIAIKDQRIARIGNLANATAARTIEARGMVVAPGFIDMLGQSETYLLIDPRGM
                     SKVMMGVTTEITGEGESIAPINERQIKEQEDFLKRFNLTIDWRTLDEYFRRLEKQGTG
                     LNLGTFIGATQIREYVVG"
     gene            complement(588..1016)
                     /locus_tag="VIJ87_03485"
     CDS             complement(588..1016)
                     /locus_tag="VIJ87_03485"
                     /inference="COORDINATES: protein motif:HMM:NF016056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol-disulfide oxidoreductase DCC family
                     protein"
                     /protein_id="HEY5443531.1"
                     /translation="MTNPIVLYDGVCGLCNRLVQFLLKRDKHDRLRYAALQSDFAVKV
                     LNRHGLDPKDLDTVHVILNYEETDERVLARSDAILHVVSALGGVWRIAGVGKIVPRPL
                     RDFAYKLVAENRYRMFGKFETCMLPETRHRAKFLDTLKQE"
     gene            complement(1147..>3599)
                     /locus_tag="VIJ87_03490"
     CDS             complement(1147..>3599)
                     /locus_tag="VIJ87_03490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443532.1"
                     /translation="TTDGGNTWHQLTKGLPTFEQGLGRIGIAVAPSDPKRVYVTVDST
                     RGGGIYRSDDAGETFELATGERRVWSRGSDFAEIDVDPTNKDIVYCSAIEIYKSTDGA
                     KTFVGFKGAPGGDDYHTMWINPDNPKIILIAVDQGAVVTVNGGETWSSWYNQPTAQFY
                     HVITDNQFPYWVYGAQQESGSAGVKSRGDNGAISFRDWRTVGVEEYGYVAPDPLNPNL
                     IYGGKATRFDTTTGQVQNVAPELLRSGKYRFLRTAPILFSPVDPHVLYLAGNVLFKTI
                     NGGMSWDVISPDLSREKPEVPESIGVFKRPEMATQPRRGVIYAISPSPKDINTIWAGT
                     DDGLVHVTKDGGKTWRDVTPPGLTSWSKISQIDAGHSDALTAYIAVNRIRLDDQKPHV
                     YRTMDGGATWKEIVNGLPEGPVNTVREDPQRRGLLFAGTELAVFASLDNGDHWQPLRL
                     NMPATSIRDLVVHNDDIVVGTHGRSFWILDDITPLRQLTTQIVNAPSHLFAPQVAYRV
                     KRNVNSDTPLPPEEPVGQNPPDGAIINYYLKENATRSIVLEIFDAKNQLVRRYSSDDK
                     PEPINEKDYAVPAYWYRPPQVLQTKAGLQRFIWDLKYAPPPAFSHGFPISAIYKDTPL
                     YPLGPAVLPGTYTVKLTVNDKVSTQTMTVKMDPRVNSGATALGQQFSLSLEANEGMEQ
                     SYKTVEAIRRLRTQIKSAIDRVGRGPLAEALAALDKKATAIGGPGSAEAGSPGTPGGT
                     IDLRNPNLTTLNGSQASLLENLQSADLAPTVPTVSAAAELQRTLTKLLADWNDLRTKD
                     LEAVNAQLKAANQQLLVP"
BASE COUNT          806 a          956 c          925 g          912 t
ORIGIN      
        1 ccaaccacgt actcgcgaat ttgcgttgcg ccgatgaatg ttccgagatt tagcccggtg
       61 ccttgtttct ccaagcgtcg aaaatattcg tcgagcgttc gccaatcgat cgtcaggttg
      121 aagcgcttca gaaaatcttc ctgttcctta atctgtcgtt cgttaattgg agcaatagac
      181 tcaccttcac cggtgatctc tgttgtgacc cccatcatca ccttgctcat gccacgcgga
      241 tcgatcagca aataggtttc tgattggcca agcatgtcga tgaatcctgg ggcgaccacc
      301 attccgcgag cctctattgt tcttgctgca gtggcgtttg caagattacc gatgcgggcg
      361 atgcgttggt ctttgattgc gatatcggcg ttgtagccag gccgaccaga gccatcgacg
      421 atgcgaccgt ttttgatgag gacgtcgtat tgcgtcgttt gagctgaacc tgttgccatt
      481 agaaaggaga cacagccagg aattgcgaag accaacgaga gccgagcaag catctgatca
      541 ctccgactag aaaatgaaaa gcaactaatt ggttttgaga accctactta ttcttgtttc
      601 aaggtatcca aaaattttgc acggtgtctg gtttcgggaa gcatgcaagt ctcaaacttg
      661 ccgaacattc gataccgatt ctcagctacc aacttgtaag cgaagtcgcg aagaggtcga
      721 ggcacaatct tgccaacgcc agcgattctc caaacacctc caagagcact caccacatgc
      781 agaattgcat ccgacctcgc gagcactcgt tcgtctgttt cctcgtaatt cagaattaca
      841 tgaacggtgt cgagatcttt tggatcgagt ccatgacgat ttagaacctt gacggcgaag
      901 tcgctttgca aagcggcgta gcgcagtcga tcgtgcttgt cccttttgag tagaaactgc
      961 acgagccgat tacacagtcc gcacactccg tcgtaaagaa caatgggatt ggtcacaatg
     1021 agtttagagt agcccttcgt tttttggagt gcggtggccc ggcaccgctt tggtaaattg
     1081 ctcgtctaat tgaaaccaac gatttaccaa agcggtgcca ggccaccgca ctccagggag
     1141 aactgctcaa ggcaccaaca actgttgatt cgcagctttt agttgcgcat tgacagcttc
     1201 cagatccttt gtccgtaaat cattccaatc ggcgagtagt ttcgtaagcg ttcgttgcaa
     1261 ctctgctgcg gccgacaccg ttggcactgt gggcgctaag tcagcactct ggagattctc
     1321 aagcagcgat gcctgacttc cgttcagagt ggttagattt ggatttctca aatcgatggt
     1381 tccacctggc gttccgggcg aaccagcctc agcactaccc ggtccaccaa tcgcagtcgc
     1441 tttcttgtcg agagctgcaa gggcttccgc aagggggcca cgaccaactc gatcaatggc
     1501 agacttgatc tgtgtgcgaa gtcttctgat cgcttcgact gttttataac tctgctccat
     1561 cccctcgttc gcctcgagag aaagactaaa ctgttgaccc aacgcagtcg caccgctatt
     1621 aacacgcggg tccatcttca cagtcattgt ttgcgtcgac accttgtcgt tgaccgttag
     1681 cttcactgtg taggtgcctg gcaacactgc cggcccaagc ggatacagtg gcgtgtcctt
     1741 gtagatggcc gaaatcggaa acccgtgact aaaagcaggt ggcggcgcgt atttcagatc
     1801 ccaaataaaa cgctgaagcc ctgctttcgt ttgcaggact tgcgggggac gataccaata
     1861 cgcaggcaca gcgtagtctt tctcgttgat tggttcaggt ttgtcgtcgc ttgagtaacg
     1921 acgaacgagt tggttctttg cgtcaaagat ttcgagaaca atagaccgcg ttgcattctc
     1981 tttcaggtag taattaatga ttgcgccatc gggtggattt tgaccgaccg gctcctcggg
     2041 aggaagtggc gtgtcgctat tcacattccg tttcactcga taagcaactt gaggcgcaaa
     2101 cagatgtgac ggtgcattga cgatttgggt tgttaactga cgcaaaggtg tgatgtcgtc
     2161 gagtatccaa aacgatctac cgtgagttcc gacaacgata tcgtcgttgt ggacgacgag
     2221 gtcgcgaatt gaagtcgccg gcatatttag ccgcagcggc tgccagtgat caccattgtc
     2281 gagtgacgca aacacggcga gctcagttcc tgcgaacaac agtcctcgac gctgtggatc
     2341 ttctcgaacc gtattgaccg gtccttccgg caacccattc acaatctctt tccatgttgc
     2401 acctccatcc atcgttcgat agacgtgggg cttttgatcg tcaagcctga tccggttgac
     2461 agcgatataa gcggtcaacg cgtctgagtg tccagcgtcg atttgcgaga tcttgctcca
     2521 tgaagtcagc cccggcggag tcacgtcgcg ccaggtcttt ccaccgtctt tagtgacgtg
     2581 aaccaaacca tcgtcggtac cggcccagat cgtgttgatg tcttttggtg aagggctgat
     2641 tgcgtagata actccgcgac gaggttgagt tgccatctct ggtcgcttga agacgccgat
     2701 gctctcggga acctccggct tctctcgcga aaggtcagga ctgataacgt cccaactcat
     2761 tccgccattg attgtcttga agagaacatt gcccgccagg taaagcacat gaggatcgac
     2821 cggcgagaac agaatcggtg ccgtgcgtag aaatctatac ttgccgctgc gcagaagttc
     2881 cggtgcgacg ttttggacct ggcctgttgt tgtatcgaag cgtgtcgctt tgccgccgta
     2941 gatcaaattt ggattcaggg gatcaggagc gacatagcca tactcttcaa cgccgacagt
     3001 tcgccaatct cgaaatgaga tcgcgccatt gtcgccgcga ctctttacgc ctgccgatcc
     3061 actttcctgt tgtgcgccat agacccaata cggaaactgg ttgtcagtaa tgacatgata
     3121 gaactgcgcc gtcggttggt tgtaccagga actccacgtc tcgccaccgt tcactgtgac
     3181 aacggcgccc tgatccacgg caatcaggat gatcttcgga ttgtcgggat tgatccacat
     3241 cgtgtggtaa tcatccccgc cgggcgctcc tttgaagcca acaaaagtct tcgcgccatc
     3301 ggtcgactta tagatctcga tcgctgagca gtagacgatg tctttattag taggatcgac
     3361 atcgatctct gcgaagtcgc tgccacgcga ccaaacgcgt cgttcgccag ttgccagttc
     3421 aaaagtttca ccggcgtcat cggaacgata gatgccgcct ccgcgagtgg agtcgacggt
     3481 tacgtaaact cgtttaggat cgctcggcgc gacggcaatt ccgattcggc caagtccttg
     3541 ttcgaaagtg ggcagtcctt ttgtcagctg gtgccaggta ttaccgccat ccgtagttt
//
LOCUS       DATCGC010000366         1205 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_138243, whole genome shotgun sequence.
ACCESSION   DATCGC010000366 DATCGC010000000
VERSION     DATCGC010000366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1205)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1205)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1205
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_138243"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     regulatory      282..364
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01051"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cyclic di-GMP riboswitch class I; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="cyclic di-GMP"
                     /db_xref="RFAM:RF01051"
     gene            612..>1205
                     /gene="pilM"
                     /locus_tag="VIJ87_03495"
     CDS             612..>1205
                     /gene="pilM"
                     /locus_tag="VIJ87_03495"
                     /inference="COORDINATES: protein motif:HMM:TIGR01175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009297 - pilus assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus assembly protein PilM"
                     /protein_id="HEY5443533.1"
                     /translation="MFKKSMGKKNLVGLDIGSSSVKAVELTKKGSSLQLLNLGFENLQ
                     TDTIVDGQIMELNNVSNVISNIFNEHQIRTPRVAAGVSGHSVIVKNIVLPAMSQEELQ
                     ESFSWHAEEHIPFDIADVNLDYELTSKSSESLQVLMAACKSDKIANVKQAIQLAGKHP
                     VIIDVDAFALQNCYEVNYDPRAGEVVALLNIGASTMNI"
BASE COUNT          323 a          324 c          293 g          265 t
ORIGIN      
        1 ggaatcccag cgaagacagc caaggttaag gcgactcagg ctgactgatt tcgttcaaat
       61 agactctgga actcaagtga gagaattcca gaaaaggctc tcttcaatga ctccggatgc
      121 gaccttaatc actcacacag cgtaagttaa accatgaaaa atagcggttg acattgtttg
      181 gggccgtaat gtactctcac tcaagttgac ggcagtacgt gccgtcttct ggggtgccca
      241 cctggttttc aatagcggac tatcccgcta aatcttttgg agcacgataa aggcacactt
      301 cgcgtgagcg gaggtcgcaa agcctacaga agttggtagt caccaacttg gctgggtttc
      361 cgaatgagct tccatcctgc cgtaccagac ttctctaata gttctctgct gacactcgaa
      421 gggaacaatc ccctgtcggt cggtgtcgcg acctttcatc ttccacaccc ccggacttcc
      481 aaattgaaac agacaactca ctgctccgcc gccaaagtag gtaaaggacg aatgcccaga
      541 gcacgtaaag ctcgtgcccg gcttcgcaaa caaaacaaac tgcgggctca cgttgcgagg
      601 attaactaac tatgttcaag aaaagcatgg gcaaaaagaa ccttgttggt ctcgatattg
      661 gttcaagctc agtcaaggct gtcgagctga ccaaaaaggg atcaagcctg caactcctca
      721 acctgggttt tgagaacctg cagacagaca caattgttga tggccagatc atggagctca
      781 acaacgtctc caacgttatc tccaacatct tcaacgaaca ccagattcgc acacctcggg
      841 ttgcggcagg cgttagcggt cactctgtga tcgttaagaa catcgtcctg ccggctatga
      901 gccaggagga gctacaggag tcgttcagct ggcatgcgga agaacacatt cctttcgata
      961 tcgctgatgt caatttggac tacgaactca cgagcaaatc ttcggagtcg ctccaggttc
     1021 tgatggcggc atgcaagagc gacaagatcg ctaacgtcaa gcaagccatc cagctcgcag
     1081 gcaagcaccc ggtcatcatc gacgtcgatg cgttcgcttt gcagaattgc tacgaagtca
     1141 actatgaccc gcgagccggc gaagttgtcg cactgctcaa catcggcgca tcgacgatga
     1201 acatc
//
LOCUS       DATCGC010000367         1041 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_138250, whole genome shotgun sequence.
ACCESSION   DATCGC010000367 DATCGC010000000
VERSION     DATCGC010000367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1041)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1041)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1041
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_138250"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(71..>1041)
                     /locus_tag="VIJ87_03500"
     CDS             complement(71..>1041)
                     /locus_tag="VIJ87_03500"
                     /inference="COORDINATES: protein motif:HMM:NF013793.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY5443534.1"
                     /translation="REASPALIIGSMRAGAREFLQLPIDPDEFKTVLERTAEFCVSSD
                     DTTNKQGRTVAVFSGKGGAGASFFATNLAAAMRQNTLLMDLNLQAGDVASFLGKDTKY
                     SVVDFVRNLGRLDSSLIGTLISPYSDRLSLLAAPSEAHEAEEIRPEDLTEMLHLVTQR
                     YEYVVMDLPHAFDPITVAALDLADDILVLLTLDIPGIRSAKRALKVFDRLNYPREKIH
                     VVVNRWSKNIDVELQKVQSHLGERFIGFVPNDYRKVMDSINLGRPLVESDPSSKITTE
                     IKRIAALVGGNSHTASPQPRQRSLRSVFGRSNSPESLDLLTNLSEA"
BASE COUNT          268 a          262 c          256 g          255 t
ORIGIN      
        1 atgaatcttt ctcgaagtgc cattggattc ctttaggttc taaacgctca atagcctgtt
       61 ttagccagac ttaagcctcg ctcaggtttg ttaacaggtc cagagattct ggagaattcg
      121 atcgaccaaa aacagatcga agcgacctct gacgaggctg cggggaggca gtgtggctgt
      181 taccgccaac aagggcggcg atccttttga tctctgtagt gatttttgaa gatggatcgc
      241 tttcaactaa cggtcgacca aggttgatcg agtccatcac ttttcggtaa tcatttggta
      301 caaagccgat aaaccgctct cccaaatgcg actgaacctt ctgtaactca acatcaatgt
      361 tcttactcca gcgatttaca accacatgga tcttctcgcg cgggtagttc aaccgatcga
      421 atactttgag agctcgcttc gcactgcgaa tccctggaat atcgagcgtg agcaaaacga
      481 gaatgtcgtc tgccaggtca agcgccgcca cggttatcgg atcaaacgca tgtggcagat
      541 ccataacgac gtactcgtag cgctgggtaa caagatgaag catttcagtg agatcctcag
      601 gtctgatttc ttcagcttca tgagcttccg atggcgcagc aagtagcgaa agtcgatccg
      661 agtaaggaga aatcaaagtg ccaatcaatg agctgtcaag acggccgaga tttcttacaa
      721 aatccacgac agaatatttg gtgtccttac caagaaatga agctacgtcg ccagcttgaa
      781 ggttgagatc cattagcaac gtgttctggc gcatggcagc agcgaggttc gtggcgaaaa
      841 aagacgcccc cgcgccgccc tttcccgaga agaccgcaac cgtacggccc tgcttattcg
      901 tggtgtcgtc ggagctaacg cagaactcgg ccgttctttc gagaacagtt ttgaattcat
      961 caggatcgat tggcagttgc agaaactcac gcgctccagc tctcatgctc ccaatgatta
     1021 atgccggtga tgcttctcga g
//
LOCUS       DATCGC010000368         1309 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_238738, whole genome shotgun sequence.
ACCESSION   DATCGC010000368 DATCGC010000000
VERSION     DATCGC010000368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1309)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1309)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1309
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_238738"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            212..>1309
                     /locus_tag="VIJ87_03505"
     CDS             212..>1309
                     /locus_tag="VIJ87_03505"
                     /inference="COORDINATES: protein motif:HMM:NF016214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HEY5443535.1"
                     /translation="MDNLTHSLVGLAAAKAGLERLSPGATTLCVLAANAPDADVVVGL
                     FSDRWALLQHHRGITHSILGVLILAVLLPLFFYACDFIISKLTRRSVRVKFGGLLLAS
                     VIVSFTHPFLDWTNNYGIRLLLPWNSRWFYGDFVFIVDPFIWLILGSACFLLTTTTRF
                     RRIAWLALGTLLTVLIMLSPRGGNLPHPWLVRCMWLAFLVSLIVLFKNNVGKRFGFRV
                     ALASFVLLGLYWGLLSFAHSRALLKANSEAQALIRPGEAITRLVAMPTLANAFGWDCV
                     FDTNQATYRFKLKLLSQAPVSQTLRYEKPTGQLERALKEVSSDRRTQIFLGFARFPVA
                     QLSGSDCSTQTLVQLADLRYTEPGASRGNFSL"
BASE COUNT          271 a          349 c          327 g          362 t
ORIGIN      
        1 caaaaggatc ggacgacaaa cctctacctg tttcttcagc ggtgcgcgaa gctgccactc
       61 aattacaaaa gctcgacccg gaacgttacg cgaagttgcc acctgaatca ccggtcctgg
      121 gatagtccca ggtttggtta ctgagcatag ctcacggttg agaaccagtt tcccaaacga
      181 acaatgcaca atcgatcaat tcatttgatt gatggataac cttacccact cgctcgtcgg
      241 actagcagcg gccaaggcgg ggttggaaag gttgtcgccc ggagccacca ccttgtgtgt
      301 gctcgctgcg aatgcgcctg acgccgacgt cgtggtggga ctcttcagcg atcgctgggc
      361 acttctacag caccatcgcg gcataacgca ttcaatcttg ggtgtcctca tacttgccgt
      421 ccttcttccc ctgtttttct atgcctgcga tttcattatc tccaaactca caaggcgaag
      481 tgtgcgcgtt aagtttggcg ggctgctctt agcgtcagtt atcgtcagct ttacccatcc
      541 atttctcgat tggacaaaca actacggtat tcgcttgctg ttgccatgga attcaagatg
      601 gttctatggc gattttgtat tcatcgtgga tccgtttatt tggttgatac tgggtagcgc
      661 ttgcttcttg ctgactacca cgactcgttt ccgacgtatc gcctggctcg ctctcggtac
      721 tttgctgacg gtcttaataa tgttgagtcc acggggcgga aaccttccgc atccatggct
      781 tgttcgctgt atgtggttag cattcctggt tagcctgatt gttctcttca aaaacaatgt
      841 gggaaagcga ttcggcttca gagtggccct ggcgtcgttt gtcctgctgg gtctctattg
      901 ggggcttttg agttttgccc actcacgagc gttgttgaaa gccaacagcg aagctcaggc
      961 gctcattcga cctggtgaag caattactcg tctagtagcg atgccgacgc tggcaaatgc
     1021 gtttggctgg gattgtgttt tcgacactaa ccaggcgact taccgattca aattgaaact
     1081 cctgagccaa gcgcccgttt ctcaaacact tcgttatgag aaaccaactg gtcaactgga
     1141 gcgagctctt aaggaagtct cgagtgatcg ccgaacacag atctttctcg ggttcgcgcg
     1201 ctttcctgtt gcacaacttt caggcagtga ttgctctacg cagaccctcg ttcaattggc
     1261 agacttacgt tacactgaac ccggggcctc ccggggaaac ttctcgctt
//
LOCUS       DATCGC010000369         1074 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_72007, whole genome shotgun sequence.
ACCESSION   DATCGC010000369 DATCGC010000000
VERSION     DATCGC010000369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1074)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1074)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1074
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72007"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1074
                     /locus_tag="VIJ87_03510"
     CDS             <1..>1074
                     /locus_tag="VIJ87_03510"
                     /inference="COORDINATES: protein motif:HMM:NF024371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF3857 domain-containing protein"
                     /protein_id="HEY5443536.1"
                     /translation="SQSKIDIPYGNVGGEIKIKDVAARTIKADGSIIELKKEDVFERT
                     IVKVSGLKVKAKSFAMPAVEPGCIIEYRWKEVRVNRDASYVRLQFQRDIPVQHVDYYI
                     KPMAYENLGLATATFHGTAAHFVKDKGGFYKASMSDMPAIVEESRMPPENQVKTWMLI
                     YYTRPQQKDPQKFWSDLGKEYYSATKSLMKPNDEAKAMAASLTADAKTSDEKLQKLFE
                     FCRTKITNTSNDASGITPDDRKKLKENKGPGDTLKHGMGSSGDIDMLFASLATALGFD
                     ARIVLAPDRGDILFDQEIRSFPNPYFLDAANIAVNVEGTWKYFNPGYNYIPFGMLRWQ
                     EEGEQALITDPKEPVWVTTPMSTP"
BASE COUNT          304 a          253 c          285 g          232 t
ORIGIN      
        1 atcgcaaagc aagatcgaca tcccctacgg gaacgtgggt ggtgaaataa agatcaaaga
       61 cgtcgcagcg cgtacgatca aagccgacgg ttcaatcatt gagctgaaaa aggaagacgt
      121 gtttgagcgc acgattgtca aagtgagcgg tctgaaagtg aaagcaaagt cgtttgccat
      181 gccggccgtc gaacctggct gcatcatcga atatcgctgg aaagaagttc gggtgaatcg
      241 cgacgcgagt tatgtccgtc tacagttcca acgcgacatt ccagttcagc atgtcgatta
      301 ctacatcaag ccgatggctt acgagaacct ggggttggcc accgctacgt ttcatggtac
      361 ggccgcccat ttcgtcaaag acaaaggcgg tttttacaaa gcgtcgatga gtgacatgcc
      421 ggcaatcgtg gaagaatcgc gcatgccccc tgagaaccag gtgaagacct ggatgttgat
      481 ttactacaca cgtccccaac aaaaagatcc gcaaaagttt tggtccgacc ttggtaagga
      541 gtactacagt gcgacaaagt cgctgatgaa gcccaacgat gaagctaagg cgatggcggc
      601 gtctctgaca gctgacgcaa aaacttcaga cgagaaactg caaaagctgt ttgagttctg
      661 tcggaccaag atcactaaca ccagcaacga tgcgtcgggc atcacacctg acgatcgtaa
      721 gaagctcaaa gagaataagg ggccgggcga cacgctgaaa catggaatgg gaagctctgg
      781 cgacattgat atgttgtttg cttcattggc aacagcactc ggatttgatg cgcgtattgt
      841 gctcgcgccc gatcgaggtg acatcctgtt tgatcaggag atacgcagtt ttccaaatcc
      901 atattttctt gatgctgcaa acatagcagt caatgtcgaa ggtacctgga agtatttcaa
      961 tcctggttac aactacattc cgtttggcat gttgaggtgg caggaagaag gcgaacaggc
     1021 cctgattaca gatccgaaag aaccggtctg ggttacaaca ccaatgtcga cacc
//
LOCUS       DATCGC010000370         4536 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_104939, whole genome shotgun sequence.
ACCESSION   DATCGC010000370 DATCGC010000000
VERSION     DATCGC010000370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4536
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104939"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            106..1698
                     /gene="rpoN"
                     /locus_tag="VIJ87_03515"
     CDS             106..1698
                     /gene="rpoN"
                     /locus_tag="VIJ87_03515"
                     /inference="COORDINATES: protein motif:HMM:TIGR02395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HEY5443537.1"
                     /translation="MSLKLTTSLSQRLVLTPQLRQRIEMLQMTSLELTDLIQQQLLEN
                     PVLEEVPSQEEVQELAEKVLDHLASSDADSAFEASAPEAGTPGTNGSGDQDVVSSLTG
                     PTEDMADSFVAGEHGEDGSTEESVGEEGSRDAFEEIDFGREFQDYLDPGYKTQEIEYK
                     EDAPTFEQFLTRPPSLADHLEWQLHMSSLDPVLCEAATAVIGNLNADGRLNATNEEIA
                     AMGEWSEEIVEQARQTIMRLDPVGCGARDVKECLLVQLEVLGETDRLASKLIREHLSE
                     LQQHKLPNLSKQIGAEVELLLSELQFIRTLDPYPGRRYSSEEPILISPEIYIEKLDEN
                     DDDYIIYFADDGSPRLRVSQQYQQMLSQGVSNETKSFIREKMRSAVDLLRNIEHRRQT
                     IYKVVESIVARQRDFLDHGVQHIKPMMLKDIAEDIGMHLSTVSRVVNRKYAHTPQGVI
                     ELRRFFTEGMLNEDGEEISTRIIKLKIKKLIEEEDSHNPITDDQVVKILAKDGIKLSR
                     RTVAKYRDQMQIPGSRERRAVV"
     gene            1807..2340
                     /gene="raiA"
                     /locus_tag="VIJ87_03520"
     CDS             1807..2340
                     /gene="raiA"
                     /locus_tag="VIJ87_03520"
                     /inference="COORDINATES: protein motif:HMM:TIGR00741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_component: GO:0022626 - cytosolic ribosome [Evidence
                     IEA];
                     GO_function: GO:0045182 - translation regulator activity
                     [Evidence IEA];
                     GO_process: GO:0009386 - translational attenuation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HEY5443538.1"
                     /translation="MKFEYTGRHVEVSPAIRSHVEGHFKKLDHIFNGTPLRTHVIIEV
                     EKNRQIGEIIVYWREHTITAKDTNADMYMALTRAMSKIEKQAVKLKKKIIDRKQSARS
                     TARVAPEPDGHLEATPRPPRIVAARRYPVKPMTAEEAALRLSDETDQFLVFRDADTSR
                     LGVLYKRKDGNYGLIEP"
     gene            2420..3367
                     /gene="rapZ"
                     /locus_tag="VIJ87_03525"
     CDS             2420..3367
                     /gene="rapZ"
                     /locus_tag="VIJ87_03525"
                     /inference="COORDINATES: protein motif:HMM:NF015620.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HEY5443539.1"
                     /translation="MPRKKTIVPPADKDAAPDIVIITGLSGSGMSSATNAFQDLGYFC
                     VDNLPITMLQPFARLVTTDEDEKGIRRAALVIDIREGGFLAHFEQQLKALRTTGLKVS
                     VLFFEASDDVLQHRFSETRRPHPAERGKGLPSSIGKERAAMAKIRSLADQIIDTSEHT
                     VHTLRSFLLERFSPDRKGAPMRVQVLSFGHKYGNPGDLELLFDVRHLPNPHFVPDLKK
                     LSGHHPRVVKYLRSHEEVSETLKRFTELLTYLLPLYKREGKSYVTVGIGCTGGRHRSV
                     MIANALARTLRRAGFDAHAAHRDVRKVNRSQFRSKLLKV"
     gene            3396..3863
                     /locus_tag="VIJ87_03530"
     CDS             3396..3863
                     /locus_tag="VIJ87_03530"
                     /inference="COORDINATES: protein motif:HMM:NF015567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1902495 - transmembrane transporter
                     complex [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEY5443540.1"
                     /translation="MSNNPQQPSPQAGDVKKVSGVIVTHGHLAGELLAAAEMIIGPVS
                     HIAAVSIGWHDDVDAARDEVQRAITRVSQGRGVLLLTDMFGGTPTNIASMFLDEGTVE
                     VITGVNLPMVIKLATYTGNESLSDLARKICDQGRQGIYLAGALLAPPAKGGAD"
     gene            3865..>4536
                     /locus_tag="VIJ87_03535"
     CDS             3865..>4536
                     /locus_tag="VIJ87_03535"
                     /inference="COORDINATES: protein motif:HMM:NF017346.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008982 -
                     protein-N(PI)-phosphohistidine-sugar phosphotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HEY5443541.1"
                     /translation="MSERTLRVTGRLGLHARAAANLVRVANQFQSTVTLHRLDNSVEA
                     DAKSILSILMLAASRGTNLRIVAVGIDEVTALDAVCDLFARNFDEPQIGERQPIAVQE
                     ELRCKGLGVSEGIVLGRVLRLQDGTRDVYRAEIDGADLERERRRFRAAVRLSRRQLET
                     IKERAEKELGRGHAYIFDAHLLFLEDAKLTRDVEDYIVKERANAEWAAKVVGDRLLSI
                     YMQIND"
BASE COUNT         1190 a         1097 c         1198 g         1051 t
ORIGIN      
        1 aattccggat gtaatgccta cccgcaaacc ttgcctgatc ggttataatc cccttgtgct
       61 ttggcgcaca aattaaacac caatcatgac taaattgatt taaggatgtc tcttaaactt
      121 actaccagcc tctctcaacg actcgttctg acaccgcagt tgcgacagcg gatcgagatg
      181 ctgcaaatga cttcgttgga gttgacggat ctcattcagc agcaattgtt ggagaaccca
      241 gttcttgaag aagtccccag tcaggaagaa gtccaggaat tagccgagaa ggttctcgat
      301 cacctggcaa gctcggatgc ggattctgct tttgaagcct ccgcacctga ggcgggcact
      361 cctggaacaa atggatctgg cgaccaggat gtagtgtcgt cgttgacagg cccgactgag
      421 gacatggctg acagttttgt agccggtgaa catggtgaag atggcagtac agaagagagt
      481 gttggggaag aaggttcgcg cgacgcattt gaagaaatcg atttcggccg tgagtttcaa
      541 gactatctcg accctggata caagacgcag gaaatcgaat acaaagaaga tgctccaacc
      601 ttcgaacaat ttcttacaag gccgccatcg ttagccgatc atctcgagtg gcagttgcac
      661 atgagttctc tggatcctgt gctgtgcgag gcagccacag ctgtgattgg gaatctcaat
      721 gcagatgggc gcctcaatgc gacaaatgaa gaaattgccg cgatgggaga gtggtcggaa
      781 gaaatcgtcg aacaggctcg tcagactatt atgcgattgg atccggttgg ttgcggtgcg
      841 cgtgatgtaa aagaatgcct gctcgtgcaa ttggaagtgc tgggtgaaac tgatcgcctc
      901 gcatcaaaac tcatcaggga acatctttcc gagttacagc aacacaagtt gccaaacttg
      961 tcgaaacaga ttggggcaga agttgaattg ctgctaagcg agttgcagtt tattcgcacc
     1021 ctcgatccat atcctggccg tcgctactcg tcagaagagc ctatccttat cagcccggaa
     1081 atctatatcg agaagctgga tgagaacgac gacgactaca ttatttactt tgccgacgat
     1141 ggaagtccgc gcctccgcgt cagtcagcag tatcaacaga tgttgagcca gggagtaagc
     1201 aacgaaacca agagtttcat tagagagaag atgagatcgg ccgtcgactt gttgagaaat
     1261 atcgaacacc gacgccagac gatttataaa gtggttgagt cgattgtggc ccggcagcgt
     1321 gattttcttg atcacggagt ccaacacatt aagccgatga tgttgaagga cattgccgaa
     1381 gacattggta tgcacttatc aactgtttcg cgagtcgtga atcgaaagta tgcgcacaca
     1441 ccgcaaggcg taattgaact gagaaggttc ttcaccgaag gaatgcttaa cgaagacggc
     1501 gaagagatct caacgcgcat cattaagttg aagatcaaga aacttatcga agaagaagat
     1561 tcgcataatc caataaccga cgatcaagtt gtaaagatac tggctaagga tggaattaaa
     1621 ttgtcgcgta gaaccgtcgc gaagtatcgc gaccaaatgc aaatccccgg ttcgcgcgaa
     1681 cgtcgcgctg ttgtttgagt gtttcaataa cgcgtgaagg gttttaccaa taccattgtt
     1741 gtgctgtaga gccggccccg atacggttac gcattggtat cttttccaac aggagggatt
     1801 tggctaatga aatttgaata cacaggtaga catgttgagg tttcgccggc aatacgtagt
     1861 cacgtcgaag gccacttcaa gaaactcgat cacatcttca atggaactcc actccgcaca
     1921 cacgtaatta ttgaagttga aaagaaccgt cagataggtg aaatcatagt ttactggcgt
     1981 gagcacacga tcaccgctaa agacactaac gctgatatgt acatggccct gactcgggca
     2041 atgtcaaaga ttgaaaagca agcggtcaag cttaagaaga agatcattga tcgaaagcaa
     2101 agcgcacgct caacagcacg agtcgctccc gaaccagatg gtcacctgga agccacgcct
     2161 cgcccgccgc gaatcgtcgc ggctcgacgt tacccggtca aaccgatgac ggctgaggaa
     2221 gctgcgctga gactatctga tgaaacggat cagtttttag tgtttcgaga tgcggatacc
     2281 agccgacttg gagtgctcta caaacgcaaa gacggtaatt acggcctaat cgaaccgtga
     2341 agaattagta atcagaaggc aggagcagta ggcacgcgca aactctactc ctgccttttg
     2401 catctgccta ctgccaaaga tgcctcgcaa gaaaaccatt gttccccccg ctgataaaga
     2461 cgccgcacct gacatcgtta tcataactgg attgagtggc tcgggaatgt cttcggccac
     2521 caatgctttt caggacctgg gatatttctg tgtcgacaat cttcccatca ccatgcttca
     2581 gcctttcgct cggttggtta cgactgacga agatgaaaaa ggaatcagac gcgctgcgtt
     2641 agtgatcgac attcgtgaag gcggattcct cgcccacttt gaacaacagt tgaaagcact
     2701 gcgcacgacg gggttgaaag ttagcgtgct cttctttgaa gcttcagacg atgttctgca
     2761 acaccggttt agtgaaacac gaaggccaca ccccgctgaa cgcggaaagg gattgccctc
     2821 ttcgattgga aaagaacgcg cggcaatggc gaagattcgg tcactggctg atcagatcat
     2881 cgacacgtca gagcatactg tgcatacgct ccgcagtttt ctgctcgaac ggtttagtcc
     2941 ggatcgaaaa ggcgcgccga tgcgcgtcca ggtgctcagc tttggccaca agtacggtaa
     3001 tccaggcgac ctggaattgt tgtttgatgt ccgacacttg ccaaacccac actttgtccc
     3061 tgacctgaaa aagttatccg ggcaccaccc ccgcgtagtg aaatatctac gttctcacga
     3121 agaagtaagt gaaacgctca agcggtttac tgaactactg acttacctgc tacctctcta
     3181 caagcgcgaa gggaagtcgt acgttacagt tggtatagga tgcacaggcg gacgtcatcg
     3241 atccgtgatg atcgctaatg cactagcgcg aactttgcgg cgtgcgggtt ttgatgctca
     3301 tgcagcacat cgggacgtgc gcaaagtaaa ccgatcacag tttcgttcga agctactgaa
     3361 agtgtgatga tggtcattca agactggagg cgaagatgag taacaatcct cagcagccat
     3421 cgccacaagc gggagatgta aagaaagttt caggcgttat tgttacgcat ggacatctgg
     3481 caggcgaact tcttgctgcc gctgaaatga tcatcgggcc tgtttcccac attgccgccg
     3541 tttccatagg ttggcacgac gacgtcgacg cagctcgcga cgaagtacag agggcgatta
     3601 cacgcgtttc tcaaggacga ggcgttttgc ttctcactga catgtttggg ggaacgccta
     3661 ccaatatcgc atccatgttt ctagacgaag gaactgtcga agtgatcacc ggggtgaact
     3721 tgccgatggt gattaagttg gcaacctaca ccggaaacga atcgctctca gacctggcca
     3781 ggaaaatctg tgatcaaggc cgacagggaa tctatctcgc cggagctcta ctcgcccctc
     3841 cggctaaggg cggagctgat tgacgtgtca gagcgtaccc ttcgcgtaac tggtcgtctc
     3901 ggtcttcacg ctcgtgctgc agccaatctg gtcagggtcg ccaatcaatt ccaaagcacc
     3961 gtcactctcc atcgtctcga caattcggtt gaagcggatg ctaagtccat tcttagtatc
     4021 ctgatgttgg cagccagccg cggtaccaat ctgcgcatcg ttgcggttgg tattgatgaa
     4081 gtcactgcgc tcgacgcggt gtgcgatctg tttgcccgga atttcgacga accccaaatc
     4141 ggtgagagac agccgatcgc tgttcaggaa gaacttcggt gtaaggggct gggagtctcg
     4201 gaaggcattg tgcttggtcg agtgcttcgt cttcaggatg gcacacgtga tgtctatcgg
     4261 gccgagatcg acggtgccga tctcgaacgt gaaagacgcc gttttcgagc cgcagtgcga
     4321 ttgtccagac gacagctcga aacgataaag gagcgagccg aaaaggaact gggtcgaggt
     4381 cacgcttaca tttttgatgc tcaccttttg tttctggaag atgccaagtt aacccgcgac
     4441 gtagaggatt acattgttaa ggaacgggct aatgccgagt gggcggcgaa agttgttggc
     4501 gatcgattac tttcgatcta catgcagatt aacgac
//
LOCUS       DATCGC010000371         1063 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_371275, whole genome shotgun sequence.
ACCESSION   DATCGC010000371 DATCGC010000000
VERSION     DATCGC010000371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1063)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1063)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1063
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_371275"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(622..>1063)
                     /locus_tag="VIJ87_03540"
     CDS             complement(622..>1063)
                     /locus_tag="VIJ87_03540"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: protein motif:HMM:NF012699.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HEY5443542.1"
                     /translation="DRFYRWLTRYYYIPLLLVGIVLFSVGGWGVMLWGVFLRLILELH
                     ATWLVNSATHLWGRTRFETGDDSRNSWWVALLTFGEGWHNNHHAYPTSARHGLRWYEI
                     DLNWLGIRALQFLGLAHAIKRVRFNRASSAWQPIMGRIKSERVR"
BASE COUNT          294 a          262 c          248 g          259 t
ORIGIN      
        1 caagacacag attcgcacca acctgacatt caagttagcc tccaaggcct aagcgcgctt
       61 gatggttagt cgacgtctgg cttagtcggg atcacaagtc ggtggttctg gtcgaagtaa
      121 tgcaggtgag caatgaggat gccaaaccta ctgacctcaa tctttcgaaa aagagtggtt
      181 aatccgagag gtcgatagga aataattcag aatcttgttt attttttcca aacttctata
      241 tttcgcaaaa ccgatcggca caagtttcac cctttgccac acttcattgt gcttgcgcct
      301 caaggcttga gtatgcgtcc cgaattatga tcatttaatt ccatttgatc tttgattcag
      361 ctctgtcagg cctcgccatt gccatgtttc aaaggtgcgt gacaatacga aattactatt
      421 cgggctatgg ttgaagaatt agaggcggaa cagcagcgag ttgaattgcg cagcagacgg
      481 aacaagcatt gagagcaaaa gccaagcctt ggtaagaaga gcatcgtaac ggatcttgag
      541 cgcgtccatg aatgttggcg tccaaaacat tccctgttgg aaccagatta tttcagacgg
      601 agtaatttgc cattagcttt gctatctaac acgctcggac ttgatcctgc ccatgatcgg
      661 ttgccaggca gacgaggcgc gattgaagcg aacgcgcttg atggcatggg ccaatccgag
      721 aaattgcaaa gctctgatac ctaaccagtt caaatcaatc tcgtaccaac gaagcccatg
      781 acgcgccgag gtgggataag cgtgatggtt gttgtgccat ccctcaccaa atgttagcag
      841 cgccacccac caactatttc gcgaatcatc accagtttca aatcttgttc tgccccacag
      901 gtgcgtcgct gaattgacga gccacgtggc gtgcaactct aatatcagtc gcaggaaaac
      961 tccccatagc attacgcccc agccgccaac actgaagagc actattccta ccaataaaag
     1021 aggaatgtag taatagcgtg taagccagcg atagaaccga tcg
//
LOCUS       DATCGC010000372         1345 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_204898, whole genome shotgun sequence.
ACCESSION   DATCGC010000372 DATCGC010000000
VERSION     DATCGC010000372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1345)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1345)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1345
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_204898"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..506
                     /locus_tag="VIJ87_03545"
     CDS             <1..506
                     /locus_tag="VIJ87_03545"
                     /inference="COORDINATES: protein motif:HMM:NF019253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1585 domain-containing protein"
                     /protein_id="HEY5443543.1"
                     /translation="WVLENLVGSPPPPPPPDVPNLDEAKLGKTSSMREQLELHRKNAI
                     CASCHSRMDPLGFGLENFDAIGGWRGKDGEFIINASGILPDGRSFSGPQGLKTILKSD
                     PQAFAETLTRKLFIYALGRGLEPSDDGAVKAIVKNVAADNYRFSSVILGIVNSEPFQK
                     RRGATSK"
     gene            503..>1345
                     /locus_tag="VIJ87_03550"
     CDS             503..>1345
                     /locus_tag="VIJ87_03550"
                     /inference="COORDINATES: protein motif:HMM:NF019222.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1552 domain-containing protein"
                     /protein_id="HEY5443544.1"
                     /translation="MIISRKRLARRTFLRGMGTMVAIPFLDAMVPAFARGHALESLTP
                     VRMAFAYVPNGIVMKDWTPKTLGREYEFTRILKPLEALRSDIQILSNLDSNTGNALGD
                     GPGDHARAGASFLTGVHCRKTAGADIRGGVSVDQVAAGKFTGVTRFTSIELGCEDSRT
                     VGDCDSGYSCAYTNSLSWRTPQTPMPPEVNPRAAFERLFGSAEDLSLDPQTRARRVKY
                     RKSILDFVRNDTQNLVKTLGPADKRKMDEYLFSVREVEQRIEIAEKDTRRVTPTIDKP
                     SGIPF"
BASE COUNT          324 a          330 c          366 g          325 t
ORIGIN      
        1 agtgggtgct cgaaaatctt gttggcagtc caccgccccc tccgcctccc gatgttccca
       61 atcttgacga agcaaaactt gggaagacgt cttcgatgcg cgaacagttg gaactccacc
      121 ggaaaaatgc aatttgcgcc tcatgtcatt cgcgcatgga cccattgggg tttggccttg
      181 agaacttcga cgcgattggt ggatggcgtg gcaaggacgg agagttcata attaacgcgt
      241 ctggtatctt gccggatggc agatcattca gtggcccgca gggattgaag acaattctaa
      301 agtcagaccc gcaggcgttt gctgaaacat tgacgcgtaa gttatttatc tatgcgttgg
      361 gtcgagggct cgagcctagc gacgacggag cagtcaaagc aatcgtgaag aatgtagccg
      421 ctgacaatta ccgtttctcg agtgtgatac taggaatcgt gaatagcgaa ccctttcaga
      481 aacgaagagg agccacttct aaatgataat tagccggaag cggttggcga ggcgaacgtt
      541 tttgcgcggt atgggaacca tggttgccat tccgtttctc gacgcaatgg ttcctgcttt
      601 cgctcgcggt catgcattgg aatcactaac tccggtccga atggcttttg cttacgtgcc
      661 taacggcatc gtcatgaaag actggacgcc aaagacttta ggcagagagt acgagttcac
      721 gaggatcctt aagccgctgg aagcgcttcg tagtgacatt cagatactgt cgaacctcga
      781 ctcaaacact ggcaatgccc ttggcgacgg acctggcgat catgctcgcg cgggtgcatc
      841 ttttttgaca ggtgttcatt gtcgcaagac ggccggcgct gacattcgag gcggcgtttc
      901 tgtggaccag gtagctgcgg gcaaatttac cggtgttact cgattcactt ctattgaact
      961 tggctgtgaa gactcacgta ctgtcggcga ttgcgattcc gggtacagct gcgcctatac
     1021 aaatagcctt tcgtggcgta cacctcaaac tcctatgccg cccgaagtga atcctcgtgc
     1081 ggcgttcgag cgactgttcg gttccgctga agatcttagt cttgatcctc aaacgagagc
     1141 cagacgcgtt aagtatcgaa aaagcattct ggatttcgta agaaacgaca cgcagaatct
     1201 ggtcaaaaca ctgggacccg ctgataaacg gaagatggat gagtaccttt tttccgttcg
     1261 ggaagtggaa caacgaatcg agattgcaga gaaagatact cgtcgcgtaa ctccgacaat
     1321 cgacaagccg tcgggtatcc ctttc
//
LOCUS       DATCGC010000373         1189 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_204947, whole genome shotgun sequence.
ACCESSION   DATCGC010000373 DATCGC010000000
VERSION     DATCGC010000373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1189)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1189)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1189
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_204947"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..254)
                     /locus_tag="VIJ87_03555"
     CDS             complement(<1..254)
                     /locus_tag="VIJ87_03555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443545.1"
                     /translation="MDSQADKDLRGANASSTPAQTTPSATPVVQSSPALVESTPDPKV
                     NKMRRWIVWSSVATFLITDFLMFVRFFLPRSILEPSSTFR"
     gene            526..777
                     /locus_tag="VIJ87_03560"
     CDS             526..777
                     /locus_tag="VIJ87_03560"
                     /inference="COORDINATES: protein motif:HMM:NF017574.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin family protein"
                     /protein_id="HEY5443546.1"
                     /translation="MSKAQVIVYSRPGCHLCDEAKEAIRMADCAERFTLEEINIESSR
                     DLLLKYQFDIPVVTLDGVEAFRHRVDSEKFRQLILSGRS"
     gene            complement(755..>1189)
                     /locus_tag="VIJ87_03565"
     CDS             complement(755..>1189)
                     /locus_tag="VIJ87_03565"
                     /EC_number="6.6.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF014563.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobaltochelatase subunit CobN"
                     /protein_id="HEY5443547.1"
                     /translation="APHHGFMSFYTYLTKVLKTDGIVHVGTHGALEFMPGKQIGLSGE
                     CWPDRLIDEVPNFYIYSVNNPSEGSIAKRRSYAELISYLTPPIENAGLYRELASLKDM
                     LTAYRQSSNEDERGKLFESIEELSAKLNFTQVSNSVSSVQTG"
BASE COUNT          300 a          293 c          303 g          293 t
ORIGIN      
        1 atgcgaaacg tgctggacgg ctccaggatg gaacgcggca gaaagaaccg cacgaacatt
       61 aagaagtcgg tgattagaaa cgtggcgact gaggaccaga cgatccagcg tcgcatctta
      121 ttaacttttg gatcaggtgt gctctcgaca agcgccggcg atgattgaac gaccggggtc
      181 gctgacgggg tcgtctgcgc aggcgttgat gaagcattag caccccgcag gtctttgtcg
      241 gcctgactat ccaagtccaa acctccgtct gttgagaatg atgtgcgcta cttccgcagg
      301 tacacttcga cttcgattgc agagtgcaaa ctatacagtt ccccgaataa cagggattac
      361 tctctgcgaa gtaaagcgaa ctatttgctt aaacatgaag agcgccgccc ctgcaaaaaa
      421 caatataatg tggtcggcgg cgacatttat accttgtttc gtaattctct ggcaagaatt
      481 tttcccgaac ggctctcgct tatcatcaat ggggggaaat cttagttgtc taaagctcaa
      541 gtgattgttt actcacgacc tggctgccat ctgtgcgacg aggcgaagga agcaatcagg
      601 atggcagact gtgcggagcg gttcacgctg gaagagatca atattgagag tagtcgagac
      661 ttattgctca agtatcagtt tgatattccg gtcgtaacgc tcgacggagt tgaagctttt
      721 cggcatcggg tcgactcgga aaagtttaga caactcatcc tgtctggacg gagctgacac
      781 tgttgctaac ctgggtgaaa ttcaacttcg cactcaattc ctcgatcgac tcaaataact
      841 tccctcgttc atcttcattc gaagactgcc tgtacgcagt cagcatatcc ttcaagctgg
      901 ccaactcgcg atacagtccg gcgttctcaa tcggtggcgt caaataggaa atcaactcgg
      961 cgtaggatcg tcgcttcgca atcgaacctt ccgatggatt gttgacgctg tagatgtaga
     1021 agtttgggac ttcatcaatc aagcggtcag gccaacattc tccggaaagt ccaatctgct
     1081 ttcctggcat aaactccagg gcaccatgcg tccccacgtg aacaatgccg tctgtcttca
     1141 atacttttgt gaggtacgta taaaacgaca tgaacccgtg gtgcggggc
//
LOCUS       DATCGC010000374         1107 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_404583, whole genome shotgun sequence.
ACCESSION   DATCGC010000374 DATCGC010000000
VERSION     DATCGC010000374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1107)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1107)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1107
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_404583"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..689)
                     /locus_tag="VIJ87_03570"
     CDS             complement(<1..689)
                     /locus_tag="VIJ87_03570"
                     /inference="COORDINATES: protein motif:HMM:TIGR01444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HEY5443548.1"
                     /translation="MGIRRFTRLANNGLSRAASLPVQLLNLHSRARVVEDLSERMLTE
                     IETRSGPIRFYCPSPLLTSRAETLLTKEPDTIKWIDSFTTDAVFWDVGANVGVYSLYA
                     AARSGVSVLSFEPLAANFHVLSRNIQLNNCSDRVTAYCVALSGVTELGMLNIASPKMG
                     SALTQFGKLGEMSPYCEKGTNGSSHGMIGFTVDDFIDQFHPVFPNYIKLDVDGLELSI
                     LQGAKKTLQDSR"
     gene            complement(698..>1107)
                     /locus_tag="VIJ87_03575"
     CDS             complement(698..>1107)
                     /locus_tag="VIJ87_03575"
                     /inference="COORDINATES: protein motif:HMM:NF025877.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Wzt carbohydrate-binding domain-containing
                     protein"
                     /protein_id="HEY5443549.1"
                     /translation="CGSPAVLDILIANTSGRNVHNVRIGIGIDNDMGQRIVVFATHLA
                     DRDFPEVATDISNVEIRIPRLTLTAGRYGFTLFASVNGEIADWIKQAGTFDVESGDFY
                     GTGQTPPQGQGCFVMEHELRIGSSHARESEREF"
BASE COUNT          284 a          290 c          270 g          263 t
ORIGIN      
        1 cgcgaatcct gcagcgtctt ctttgcgccc tggagaatcg acaactccaa gccatcgacg
       61 tcaagcttaa tgtagttagg aaatactgga tgaaattggt cgatgaaatc gtcgaccgta
      121 aaaccgatca tgccatgaga ggaaccgttc gttccttttt cacaataggg ggacatctca
      181 cccaacttgc cgaactgcgt taatgcggat cccatctttg gagaagcaat gttgagcatg
      241 ccgagttcgg ttacacccga caaggcaaca cagtaagcgg ttactcgatc agaacagtta
      301 ttcagttgga tgttgcgaga aaggacgtgg aaatttgccg ccagcggttc aaacgacaaa
      361 acagaaacgc cagatcgggc ggcagcatag agactgtaga ctcccacgtt tgctcccacg
      421 tcccaaaaca cggcgtccgt tgtaaagctg tcaatccact taatcgtgtc cggttctttc
      481 gtcagcaacg tctctgcgcg actcgtgagt aaaggagagg gacagtagaa ccgaatcggc
      541 ccggaacgag tttcaatttc ggtcagcatc cgttcggaaa gatcctcgac aacgcgcgcg
      601 cgcgaatgga gatttagtaa ttgcaccgga agagaagccg ctcggctcag tccattgttt
      661 gctaaccgcg taaaccttct aatacccatc ttgctagtta gaattcccgt tcgctctctc
      721 gcgcatgtga actaccgata cggagctcat gctccattac gaagcagcct tgtccctgtg
      781 gaggtgtttg accggttcca tagaagtcgc cgctttcgac gtcaaatgtt cctgcctgct
      841 taatccaatc agcgatttct ccattcacgc ttgcgaataa agtgaatcca taccgaccag
      901 cagttagtgt caagcgtggt attcgaatct cgacgttgct tatgtcagta gcaacttcgg
      961 gaaaatctcg atcggccaaa tgagtggcaa acaccacgat gcgctggccc atgtcattat
     1021 cgataccaat tccaattcgc acgttatgta cgttgcggcc gcttgtgttt gcaatcagaa
     1081 tgtcgagcac agcaggcgaa ccgcagg
//
LOCUS       DATCGC010000375         1132 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_438672, whole genome shotgun sequence.
ACCESSION   DATCGC010000375 DATCGC010000000
VERSION     DATCGC010000375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1132)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1132)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1132
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_438672"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(72..>1132)
                     /locus_tag="VIJ87_03580"
     CDS             complement(72..>1132)
                     /locus_tag="VIJ87_03580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443550.1"
                     /translation="LSLTSQAVFVMFLRSRPTNQRRILVALTLVNIVFVYTHYFAWLM
                     IAAEYLWIVVKDRRHLRSITLATSIVFLSCLPWIGVIVYVSTQVSYSFLDKISWYYPP
                     GIHSLLLLFRCFQGGFNSTALTLTGSFIVLVIILAALKTSLRSQSEDPKREPNLNPYA
                     LLLWLSVFPIVSSEVVCKIFTWKWEPRYLILVAGSYLLLISASAFSLRNRYLRTLAIL
                     FLVAWSSVAGFTDNLPEVLHGPNGTSFLLAQDLSQREARSVGPISIYGISPYAEQGLR
                     LALNLTGERRFVTRPCSPDVAFTDDYFWLAVTEHDLTAMDRVKKLSSGQLYDLGEPIY
                     RGEYPQRHILIPVQRRMN"
BASE COUNT          346 a          256 c          290 g          240 t
ORIGIN      
        1 aaaagcggag gggtcgactc ggctaatcag caacagccgg ctccggtcga gttatcgcca
       61 tagtaaaacc gtcaattcat tcttcgttgc acggggatta ggatgtgccg ctgaggatac
      121 tcaccgcgat agattggctc acctagatca taaagttgac ctgacgaaag tttcttaact
      181 cggtccatag cagtcaggtc gtgttctgta acggccagcc agaaatagtc gtctgtaaaa
      241 gcaacatcgg gagaacaagg tctggttacg aatcgtcgtt cacccgtaag gttaagggcg
      301 agacggagtc cctgttctgc gtatggtgat atgccgtaaa tgctgatggg acctacgctg
      361 cgagcctctc tttgcgatag atcttgcgcg agcaaaaacg acgtgccatt gggaccatgt
      421 agaacctccg gcagattatc ggtaaaccct gcaacggaac tccaggcgac caggaagagt
      481 attgccagcg ttcgtaagta gcggttgcgt aagctaaaag cagaagcgga aatcaggagt
      541 aagtatgacc cagccactaa gattaaatag cgaggttccc acttccaggt aaaaatcttg
      601 cagacaacct cactcgaaac gatcgggaat acagaaagcc acaaaagcaa agcataagga
      661 tttaaattag gttcacgctt tggatcttcc gattgtgatc gcaaagaggt ttttaaagct
      721 gcgaggatga tgacgagtac aatgaagctc ccggtaagcg tcaaggccgt agaattgaat
      781 ccaccctgaa aacagcgaaa cagcagcagg agactatgaa tgcctggcgg gtagtaccag
      841 ctaatcttat cgagaaaaga ataggatact tgcgtcgaaa catagacgat gactccaatc
      901 cacggcaggc aactaagaaa aacgatcgat gttgccaaag taattgagcg caagtgtcgg
      961 cgatccttga cgactatcca tagatactcg gcagcaatca tgagccacgc gaaataatgc
     1021 gtatagacga acacgatgtt tactagcgtc aacgcaacca atatccgcct ttgatttgtt
     1081 gggcggctac gcagaaacat gacaaacact gcttgcgaag ttagagagag aa
//
LOCUS       DATCGC010000376         3301 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_404627, whole genome shotgun sequence.
ACCESSION   DATCGC010000376 DATCGC010000000
VERSION     DATCGC010000376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3301)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3301)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3301
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_404627"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..926
                     /gene="ccsA"
                     /locus_tag="VIJ87_03585"
     CDS             <1..926
                     /gene="ccsA"
                     /locus_tag="VIJ87_03585"
                     /inference="COORDINATES: protein motif:HMM:NF013725.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HEY5443551.1"
                     /translation="PETQHPKTNALIQFRNTPQHPLECPRRPDRETRNRNFVKSLLLA
                     VLAAYLIAAIHSILAFVNKRRSVQRVAEWSMAAGFILHTAALLADWVIDGHYPLFFLR
                     ETLSFLAWALVAAYALILYRYRAQALGVLAMPLISALTFTAMLTTTGPQDAPAGFSTT
                     WLFPIHTTLLIFAYAAFFIVFMSSVLYLLQERELKLKTFGAIFHRLPSLTTVNQLATH
                     SAVLGLTLLTLGIATGMLWSAARDGRIWHNDPKEIFAVLTWLLYFLLLLYRSSASWRG
                     KNAAWLGVAGFALVLCTFFGTRLLGGYHVFG"
     gene            957..2231
                     /gene="hemA"
                     /locus_tag="VIJ87_03590"
     CDS             957..2231
                     /gene="hemA"
                     /locus_tag="VIJ87_03590"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: protein motif:HMM:TIGR01035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008883 - glutamyl-tRNA reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HEY5443552.1"
                     /translation="MSIVLVGVNHKTAPVEVRELLAFSDEACADGLRRLVDGEVVREG
                     LIVSTCNRVEILSSTTAEQLQNGTERITQFLDSGQSLPPGFLGQHIYSHTDDEAVRHL
                     FRVASSLDSMVVGEPQVLGQVRRAYSLAVEAGTAGRVLNRLVHHTFRVAKRVRSETGI
                     AANAVSISYMAVELGKKIFDSLKGHSVLLIGAGEMAELSAKHLLSAGASRVRIVNRTP
                     EAAQKLANEFNGEAVPFDQLEASLAEADVVICSTSSSEFVITEEMTRKAREKRRNRPM
                     CMIDISVPRNIDPNAGKVPNVFVFDIDDLESVITSNIREREREAERAELIVQSEVMQF
                     QQSLRLMDMGPTIGALRQRFQEIARTELERQRKHLGTLTPEQETALEQLLMSTVNKIS
                     HPVLNQMRRFYEASDTETMQEIAESFGLDEKD"
     gene            2239..3162
                     /gene="hemC"
                     /locus_tag="VIJ87_03595"
     CDS             2239..3162
                     /gene="hemC"
                     /locus_tag="VIJ87_03595"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: protein motif:HMM:TIGR00212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HEY5443553.1"
                     /translation="MNRSLVIGSRGSKLALWQAQQAQALLLATHPGLSVSIEIIKTTG
                     DVKRDPLSIIGGKGVFTKELEDALLDGRIDLAVHSLKDLPTILPEQLSIAAICEREDP
                     RDALVLRENNPIASVLELPANSVVGTSSQRRLAQLKSRRPDLVIKDLRGNVDTRIRKL
                     DEGQYDALILASAGLKRLGQQHRISLAISIDEMLPAVGQGAIAIETRSDNELAVQSIR
                     KLEHHETRLACLAERAFLRTLGGGCQFPIAAHGVVKGQELQLEGLVATPDGSRILRDI
                     LSGSSEQPEELGAALAEKLNEHGAQSLLNEQ"
BASE COUNT          790 a          887 c          848 g          776 t
ORIGIN      
        1 gacctgagac ccaacaccca aagaccaatg ctttaatcca atttcgcaat accccgcagc
       61 atcctttaga atgccctcgc cggcccgatc gcgaaacccg taaccgaaat tttgtgaagt
      121 ccttactcct ggcagtcctg gcggcttatc tgatagccgc gattcattcc atcctggcgt
      181 tcgttaacaa acgtcgctcg gttcaacgtg tggccgaatg gtcgatggct gccggattta
      241 ttttgcacac cgctgccttg ctcgccgact gggtaattga cggtcattat cctttgttct
      301 ttttaagaga aactctttca ttcctggctt gggcccttgt cgctgcgtac gctcttatcc
      361 tttatcgata tcgcgcccag gcattgggtg tcttggctat gccactgatc tcggcattga
      421 cctttacagc aatgctcacc acaactggcc cacaggacgc gccagcagga ttctcaacaa
      481 cgtggttatt tccaatccac acaacattgc tgatcttcgc gtacgctgct ttctttatcg
      541 tcttcatgtc gagcgtcttg tacctgcttc aggaacgcga gctcaaacta aagacattcg
      601 gggcgatctt tcatcgcctg ccatcactaa ccaccgttaa ccaacttgca acccattcgg
      661 ctgtgcttgg cttgaccctg ctaacacttg gcattgcgac aggaatgctt tggtcggcgg
      721 cgcgtgatgg aagaatctgg cacaacgatc caaaagaaat cttcgccgtt cttacctggc
      781 tgctctattt cctacttctg ctctatcgat cgagcgcgag ttggcgagga aagaacgccg
      841 cctggttagg ggtcgcgggg tttgccctcg tgctttgtac gtttttcgga acgcgtctgc
      901 tcggcggtta tcacgtgttt ggataacaca gactgaagtg tgtggcactt agcgatatgt
      961 cgatcgtctt agtcggagta aatcacaaga ccgcacccgt ggaagtgcgc gaattactcg
     1021 cgttttctga cgaggcgtgc gccgatggtt tacgtcgact ggtggacggc gaggttgttc
     1081 gcgagggtct gattgtttcc acctgcaatc gagttgagat actgagctct acaactgctg
     1141 aacaactcca gaacggaacc gagcgcatca cgcagtttct tgatagtggg caaagtcttc
     1201 caccgggatt tctgggacaa cacatctaca gtcacaccga cgacgaagcc gtcagacatc
     1261 tttttcgcgt cgcctcctcg ctcgactcaa tggtcgtcgg cgaaccacag gttcttggtc
     1321 aggttaggcg cgcatactca cttgcagttg aggcgggcac tgcgggtcga gttctcaatc
     1381 ggctggttca tcacaccttc cgcgttgcca aacgagttcg gagtgaaacc ggtatcgctg
     1441 cgaacgcagt atcgatcagc tacatggcag tcgaactcgg caagaagatt tttgattcac
     1501 taaagggaca ctcggtgttg ctcatcggtg cgggagaaat ggctgaacta tctgccaaac
     1561 atctactgag tgccggcgca tctcgcgttc gaatagtgaa caggacaccg gaagcagctc
     1621 aaaaacttgc gaacgaattc aacggcgaag ccgttccctt tgatcagctt gaggcctcac
     1681 ttgctgaagc cgacgtagtg atctgttcga cttcatcgtc cgaattcgtc atcactgaag
     1741 agatgacccg taaagctcgt gagaaacgta gaaaccgtcc gatgtgcatg atcgacatca
     1801 gcgtaccaag aaacatcgat ccgaacgcag gaaaagtccc aaacgtgttc gtgttcgaca
     1861 tcgacgatct ggagtcagtg attacttcca acattcgcga gcgcgaacgc gaggctgagc
     1921 gcgcggagtt aattgtccaa tccgaagtga tgcagtttca gcagtcgtta cggctgatgg
     1981 acatgggacc gactattggc gcgctgcgac aaagatttca ggagattgcc cgcacggaac
     2041 tggagcgaca aagaaagcat ctgggtacac tcacacccga gcaagaaact gcgctcgaac
     2101 agttgctgat gtcgacggtc aacaagatct cgcatccggt ccttaaccaa atgcgccgtt
     2161 tttacgaggc cagtgatacg gagacaatgc aggagattgc cgaatccttt ggtctggacg
     2221 agaaggattg agcgtctcat gaatcgttcc ctggtaatcg gttctcgcgg atctaagctc
     2281 gctctctggc aggcccaaca agcgcaggca ctgctcctgg caacccatcc gggtctttct
     2341 gtaagcatcg aaatcatcaa gacaactggc gacgtgaaac gtgatccgct ttcaataatt
     2401 gggggcaaag gcgttttcac aaaagaactg gaggacgcgc tactcgatgg acgcatcgac
     2461 ctcgcggttc attcactgaa agacctacca accatcctgc ctgaacagct gtcgattgcc
     2521 gcaatttgtg aacgagagga tccgcgcgat gcattggtct tgcgcgagaa taatccgatc
     2581 gcatcggtcc tggagctacc agccaattcg gttgtcggca catcgagtca acgtcgcctt
     2641 gcgcaactca aatcaagacg cccggatctg gtcatcaaag atctacgcgg aaacgtcgac
     2701 acgcgaatcc gaaagttgga cgaggggcag tacgatgcgc tcatactagc ctcagcgggc
     2761 ttaaagcgtc tcgggcagca acacagaatt agcctggcga tttcgattga cgaaatgctg
     2821 ccagccgtag gccagggcgc gatcgcgatc gaaacgcgtt ccgacaacga attggcagtt
     2881 cagtcaattc gaaaactcga acaccacgaa actcgccttg cctgtcttgc agaacgagct
     2941 tttcttcgaa cactaggtgg cggctgtcag tttccgattg ccgcacatgg agtggttaaa
     3001 ggtcaggaac ttcaacttga aggtttggta gcgacgcctg acggatcaag aattctacga
     3061 gatattcttt ctgggtcgtc agagcaacct gaggaactgg gcgcggctct ggcggaaaaa
     3121 ctaaatgagc atggcgcaca gtctctgcta aacgagcagt aagccaatga atcaacaact
     3181 agccggtagg accgttgtta ttacccgcgc tgcctcgcaa gccaatgact tcctcacgat
     3241 tcttgaagaa tacggtgcca aggtaatctg ttgccccact atttagatca aagaacctga
     3301 c
//
LOCUS       DATCGC010000377         2654 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_438721, whole genome shotgun sequence.
ACCESSION   DATCGC010000377 DATCGC010000000
VERSION     DATCGC010000377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2654)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2654)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2654
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_438721"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..860
                     /locus_tag="VIJ87_03600"
     rRNA            <1..860
                     /locus_tag="VIJ87_03600"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            986..1062
                     /locus_tag="VIJ87_03605"
     tRNA            986..1062
                     /locus_tag="VIJ87_03605"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1020..1022,aa:Ile,seq:gat)
     gene            1096..1171
                     /locus_tag="VIJ87_03610"
     tRNA            1096..1171
                     /locus_tag="VIJ87_03610"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1129..1131,aa:Ala,seq:tgc)
     gene            1367..>2654
                     /locus_tag="VIJ87_03615"
     rRNA            1367..>2654
                     /locus_tag="VIJ87_03615"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          719 a          603 c          781 g          551 t
ORIGIN      
        1 gtgtagcggt gaaatgcgta gatatcggaa ggaacatcag tggcgaaagc ggcttcctgg
       61 accagtaccg acgttcaggc acgaaagcgt ggggagcaaa caggattaga taccctggta
      121 gtccacgcca taaacgatga ggactagacg ttggagggtt aagcctttca gtgtcgtagc
      181 taacgcgcta agtcctccgc ctggggagta cggccgcaag gttgaaactc aaaggaattg
      241 acggggaccc gcacaagcgg tggagcatgt ggtttaattc gatgcaacgc gaagaacctt
      301 acctggtctt gacatccatg gaatcccgca gagatgtggg agtgccgtaa ggaaccatga
      361 gacaggtgct gcatggctgt cgtcagctcg tgtcgtgaga tgttgggtta agtcccgcaa
      421 cgagcgcaac ccttgtcctt agttgccatc attaagttgg gaactctaag gagaccgccg
      481 gtgacaaacc ggaggaaggt ggggatgacg tcaagtcatc atggccttta tgaccagggc
      541 tacacacgtg ctacaatggc agatacagag ggaagccaac tcgcgagagg gagctaatcc
      601 cagaaaatct gtcgtagtcc ggattggagt ctgcaactcg actccatgaa gtcggaatcg
      661 ctagtaatcg cagatcagca ttgctgcggt gaatacgttc ccgggtcttg tacacaccgc
      721 ccgtcacacc atggaagtgt attgcaccag aagcaggtag cctgaccgca aggagggcgc
      781 ctaccacggt gtggtccatg actggggtga agtcgtaaca aggtagccgt acgggaacgt
      841 gcggctggat cacctccttt caagagaaaa gtccttcaga cgacaagttg gcgcgagttc
      901 ccaacacaag ttacctgcat caagttgtta ggcggcggcc cggggccttc gtttcaacgg
      961 ctcgagcata tgggctgcag atattgggtc tgtagctcag ttagttagag cgcacccctg
     1021 ataagggtga ggtcgcaggt gcaactcctg ccagacccac caatatctga agaccattca
     1081 tagacggaaa ggcgcggggc catagctcag ctgggagagc gtctggtttg caaccagaag
     1141 gtcaccggtt cgatcccggt tggctccacc atccttcgag caccctaaca acctgcaatc
     1201 aagagtttca ttgcgtcatc caggcgatgc gcatgctctt taacaatccg aaagtttttt
     1261 tgttttaacg cccatgttca agcgatgaac actgttgatt gattggacat gtcgcgttcg
     1321 cacaatgtga atcagctcca tatctccaaa ctccttggag ttatatggtc aagtgaataa
     1381 gcgcatatgg cggatgcctt ggcggcacaa ggcgatgaag gacgttgtag cctgcgataa
     1441 gccacgggga gctggcaaac aagcttcgat ccgtggatct ccgaatgggg caacccagag
     1501 cttcggctct atcccgcact gaatacatag gtgtgggaag cgaacccggt gaattgaaac
     1561 atctcagtaa ccggaggaaa agacatcaac cgagattccc ctagtagtgg cgagcgaacg
     1621 gggaccagcc cagttggggt aagtcgacga gagttagtgg aacagtctgg aaagtctggc
     1681 cgtagcgggt gatagccccg tacacgaaaa ctcaaattga tgaccaacga agagtaggac
     1741 gggacacgtg aaatcctgtc tgaacatggg gggaccatcc tccaaggcta aatactctgt
     1801 gccgaccgat agtgaactag taccgtgagg gaaaggcgaa aagaaccccg gtgaggggag
     1861 tgaaatagaa cctgaaaccg tatgcgtaca agcagtagga gccccgcaag gggtgactgc
     1921 gtaccttttg tataatgggt cagcgagtta ttttcagtgg caaggctaac cgtatagggg
     1981 agccgtaggg aaaccgagtc ttaatcgggc gaacagtcgc tgggaataga cccgaagcca
     2041 gtcgatctat ccatgtgcag ggtgaaggcc aggtaacact ggctggaggc ccgaacgaac
     2101 cactgttgca atagtgcgtc gatgatgtgt ggataggagt gaaaggctaa tcaaggctgg
     2161 cgatagctgg ttctccccga aagctattta ggtagtgcct cgagtgaata ctctgggggg
     2221 tagagcactg ttaggagaag gggaccacct cggtctacca actccttgca aactccgaat
     2281 acccagaagt aatgctcggg agacacacgg tgggtgctaa cgtccatcgt gaaaagggaa
     2341 ataacccaga ccatcagcta aggtcccaaa atttcggcta agtggtaaac gatgtgagaa
     2401 ggcatagaca gccaggaggt tggcttagaa gcagccatcc tttaaagaaa gcgtaacagc
     2461 tcactggtca atggagtatt gcgccgaaaa tttatcgagg attaagaata atgccgaaga
     2521 caatgattta atcatcaatt tattgatgag tgagtggtag gggagcgttc taaacgcagt
     2581 gaagctaaat tgtaaagttt ggtggagtgt ttagaagtga gaatgccggt atgagtagcg
     2641 cacaagacgg gtga
//
LOCUS       DATCGC010000378         2118 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_404698, whole genome shotgun sequence.
ACCESSION   DATCGC010000378 DATCGC010000000
VERSION     DATCGC010000378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2118
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_404698"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..432)
                     /gene="ccmB"
                     /locus_tag="VIJ87_03620"
     CDS             complement(<1..432)
                     /gene="ccmB"
                     /locus_tag="VIJ87_03620"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015232 - heme transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015886 - heme transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmB"
                     /protein_id="HEY5443554.1"
                     /translation="MLRWIVWRDLILAWRRRADALSTLFFFVIVVSLFPLGIGPETEL
                     LRSIAPGVVWVAALLASMLSLGRLFANDYQDGTLEQLLMTPQPLYLVVFGKVAAQWLT
                     SELPLICIAPLLGVQFGLSNQTLRVLIVTLILGTPVLSLIGS"
     gene            complement(453..1094)
                     /gene="ccmA"
                     /locus_tag="VIJ87_03625"
     CDS             complement(453..1094)
                     /gene="ccmA"
                     /locus_tag="VIJ87_03625"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF010061.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis heme-transporting ATPase
                     CcmA"
                     /protein_id="HEY5443555.1"
                     /translation="MIRTGGRAAILDVINLGCVRGDRRVFSGVSFSLKPGTYLQVTGA
                     NGSGKTSLLRILCGLLGAAEGQVTWAGAEIHSLAEDYFSSVTFVGHRPGVKDELTAAE
                     NLRIGAGLGGIEIATHDAVEALEKVGLTRNSVPARLLSEGQRRRVSLARLVVSNTRLW
                     LLDEILTSLDKVAVALVRSLIAEHISGGGIAIVATHQDLELDSSSTQRLELAT"
     gene            complement(1180..1626)
                     /locus_tag="VIJ87_03630"
     CDS             complement(1180..1626)
                     /locus_tag="VIJ87_03630"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEY5443556.1"
                     /translation="MVNRKRTVGIHLILLCVIFQAGVSARAIDEKKNAVELISVEELK
                     TKVAANEPLLIIDVRSSESYSNSHSKIKGALHFNVRKLKYRLGFPPLKDVPKDREVVT
                     YCACPSEESSIAAAKVLLENGFKRVRALKGGWTEWQKATGPVEPRR"
     gene            complement(1650..>2118)
                     /locus_tag="VIJ87_03635"
     CDS             complement(1650..>2118)
                     /locus_tag="VIJ87_03635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443557.1"
                     /translation="NFLTGDFNGDQSEDLAVVLKPIAGKLAAMNEEYPAWLLRDPSQS
                     NPGERPKVNIQEDEAMLAIIHGFGENDWRDPQATQTFLLKNVAGSNMAVLTGKDFSSK
                     HSGRKLPRPAGDLIEETVRGTTGCLYYSSANYLWYDPKTFKPKPDAGMVHGGR"
BASE COUNT          512 a          576 c          506 g          524 t
ORIGIN      
        1 cgatccaatc aagctcagga ccggagtgcc aaggatcaac gtcactatca atactcttag
       61 cgtttgattt gacagaccaa actggacacc cagcaacggt gcaatacaaa taagcggcaa
      121 ctcggacgtg agccattggg ctgccacttt gccaaagacc acaaggtaga gcggctgagg
      181 cgtcatcaac agctgttcaa gagtgccgtc ctggtagtcg tttgcgaaca gcctgccaag
      241 tgaaagcatt gacgcgagca atgctgcaac ccaaacaaca ccaggagcga ttgaccttag
      301 gagttcggtc tctggtccga tgcccaacgg aaacaaactc acaacgatga caaagaagaa
      361 caaggtcgac agcgcatcag cgcggcggcg ccacgccagg atgagatcgc gccaaacgat
      421 ccagcgcaac atcgatagac tcgaaggtgc gttcacgttg ccagttcgag gcgttgagtc
      481 gaactactgt ccaactccaa atcctggtga gtcgcgacga tagctattcc cccgcctgat
      541 atgtgctcag ctatcaaaga tcttacgagt gcgacggcga ctttatcgag ggacgttaaa
      601 atctcatcga gtaaccaaag cctggtattc gaaactacaa gacgtgccag cgaaactctt
      661 cttcgttgtc cctcagataa tagacgcgca ggaaccgagt ttcttgtcag tcctactttt
      721 tcaagtgcct cgaccgcatc atgagtggca atttcaattc caccgaggcc ggccccaata
      781 cgaaggtttt ctgccgcagt gagttcgtct ttgactcccg gacggtgacc aacaaaggtt
      841 actgaggaga aatagtcctc agcgagtgag tgaatctccg ctccagccca cgtaacctga
      901 ccttccgcgg cacctaacaa cccgcacagg attctgagta gacttgtctt gccacttccg
      961 ttggcaccgg taacctgtaa atacgtcccg ggcttaagcg aaaaactgac gccgctaaat
     1021 actctgcgat ctccgcgaac gcatccgagg tttatgacgt cgagaatggc cgctcgtcct
     1081 ccagttcgaa tcagttgctg tcggcctcat tgtatgggac ttttggatga aaagcatttg
     1141 agaaggttcg attgggtctg ccacgtccgc atttgctaat taccgcctcg gctccaccgg
     1201 ccctgttgcc ttttgccatt cagtccatcc gcctttcagc gctcgaactc gtttgaaacc
     1261 gttttcgagt aatacttttg cggcagcaat gctcgattct tcactgggac aggcgcaata
     1321 ggtaactacc tcacgatctt ttgggacatc tttcaatggt ggaaaaccaa gcctgtactt
     1381 cagcttgcgc acgttgaaat gtagcgcacc cttgatcttt gagtggctat ttgaatagct
     1441 ctcggatgaa cgcacgtcga taatcaagag aggttcattt gctgcgactt tagtcttcag
     1501 ttcctcaacg ctgattagtt caaccgcatt cttcttttca tcaatcgcgc gagccgaaac
     1561 tcccgcttgg aagatcacgc aaagcaggat cagatgaatc cctactgttc tctttcgatt
     1621 aaccatgact gttttctcct ttaggggact cagcgccctc cgtgcaccat tcctgcatca
     1681 ggtttaggtt tgaaagtctt tggatcgtac caaagataat ttgcactgga gtagtagaga
     1741 caaccagtag tgccacgcac ggtttcttcg atcagatcac ccgcaggacg tggcaacttt
     1801 cggccgctgt gtttgcttga gaaatctttg ccggtgagaa ccgccatatt ggatccggcc
     1861 acattcttta gcagaaaggt ttgtgttgcc tgcggatcgc gccaatcgtt ttctccgaag
     1921 ccgtgaatga tcgcaagcat tgcctcgtct tcttgaatgt tcactttcgg ccgttccccc
     1981 ggattactct gggatggatc tcgtaacaac cacgcggggt attcctcgtt catcgcagcc
     2041 agttttccag caatcggctt gagaacaact gcaaggtcct ctgattggtc cccattaaag
     2101 tctccggtta gaaagttg
//
LOCUS       DATCGC010000379         1848 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_438748, whole genome shotgun sequence.
ACCESSION   DATCGC010000379 DATCGC010000000
VERSION     DATCGC010000379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1848)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1848)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1848
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_438748"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1814
                     /locus_tag="VIJ87_03640"
     CDS             <1..1814
                     /locus_tag="VIJ87_03640"
                     /inference="COORDINATES: protein motif:HMM:NF015714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HEY5443558.1"
                     /translation="RRRILQLVISSLIVWGYTVAVGAESSVVRAALMFTFVAFAGVVF
                     RPASALNALGGAALALVIKSPKDLFDPSLQLTFLSVLAIVTIAWPLLQQFKAIGTWRP
                     TRETPYPPSASPVISAICECLFWNECEWRAELVRMPHQYRLFKSPWALRLERAHLQRP
                     LRYIFSAVVVSVSVQIVLLPLLIIYFHRLSLSSVVLNIGVSLLLALLSAIALLALLIS
                     QVSATFAAPLCSLANGVNWIMIHSVDPFARAGLASIRLPEYSQWGAAIYLVYYVPLIF
                     ILGQLARWHPLGSPVPKGQRRIRRWHIASLAQAVLLIIVLFHPLSAGRPDGNLHVDFL
                     DVGQGDAALITMPDGATLLVDGGGRPSFGAPLKPGEVDSYQRDGRSVGEMVVSEYLWW
                     RGLDTVDYVLATHADADHIDGLNDIVRNFRVRSALVGRTPESDSEYAKFQQTLAATKT
                     NVTVINAGDTLHFGNVTATVLWPDTSDDPNAPSGNNDSVVLKLQYGERSILLTGDIEK
                     EAENQIMTKIGDLHVDLVKVPHHGSRTSSTNSFVAATRPRFAVISVGQTSIFGHPHAE
                     VVERWKMSGAEVLTTGRSGTISVTTDGKELWLKKFVN"
BASE COUNT          397 a          436 c          527 g          488 t
ORIGIN      
        1 cacgaaggcg aatactccag cttgtgatct cgagcttgat tgtgtggggt tacaccgttg
       61 ccgttggtgc tgagtcttcg gtggttcgcg cagcattgat gtttacgttt gtagcttttg
      121 cgggcgtagt gtttagaccg gcgtctgctt taaacgcact cggtggtgcg gccctggcac
      181 ttgtcattaa gagtccgaag gatttgtttg acccgtcgtt acaactgacg tttctgtcag
      241 tgttggcgat agtgacgatc gcctggccat tgctacagca gttcaaagcg attggtactt
      301 ggcgaccaac gcgagagaca ccttatccac catctgcgtc accagtcatt agcgcgattt
      361 gtgaatgtct cttttggaac gagtgcgaat ggagagcaga gctagttcga atgcctcacc
      421 agtatcgttt gttcaaatcg ccatgggcct tgcgtctcga gcgagcacat cttcagcgtc
      481 cactgagata catattcagc gctgtcgttg tttcggtgag tgttcagata gtgctcttgc
      541 cattgctcat tatttatttc catagactgt cgctgtcgtc agtggtgctc aacatcgggg
      601 ttagtttgct gttggctctt ctcagtgcga ttgcgttgtt agcgttgctg atttctcaag
      661 tgagcgccac gttcgctgcc ccactttgca gtctcgcaaa tggtgtcaac tggatcatga
      721 ttcatagcgt agatcccttc gcgcgcgctg gtctcgcatc gatccgtttg cctgagtact
      781 ctcaatgggg cgccgcaatc tatctcgtgt actacgtgcc attgatcttt atcttgggtc
      841 agttggctcg ctggcatccg cttggctcgc cggtcccaaa aggccagcgc agaattcgcc
      901 gatggcacat tgcgagtctt gctcaagcag tgttgctgat tattgtgctg ttccatccgt
      961 tgagtgccgg aaggccggac ggaaatcttc atgtcgattt tctggatgtt gggcaaggag
     1021 atgcagcatt aataacgatg ccggatggag cgacgctctt ggtggatggc ggcggccgac
     1081 cgagctttgg cgccccatta aaaccgggag aggttgattc gtatcaacgc gacggacgaa
     1141 gtgtcggaga gatggttgtt tctgagtatc tgtggtggag aggactggac actgttgact
     1201 atgtgttggc cacccacgcc gatgctgatc acatagacgg cctaaacgac atcgtcagaa
     1261 acttccgtgt cagaagcgca ctggttggac gaactccgga atccgattcc gagtacgcaa
     1321 agtttcagca gactctggct gcgacaaaga cgaatgtgac ggttatcaat gcgggcgaca
     1381 cccttcactt cgggaacgtc actgccacgg tcttgtggcc tgacacttcg gatgatccaa
     1441 acgcgccatc aggaaataat gattcggtcg tgctcaagtt gcagtatggc gaacgctcga
     1501 ttctcttgac tggcgacatt gagaaggaag cggaaaatca gatcatgacg aagattgggg
     1561 atcttcacgt cgacctcgtg aaagttccac atcacggaag caggacttct tcgacgaact
     1621 cctttgtcgc agcgacgcgt ccacgtttcg ccgtgatctc agtaggtcag acgtcgatat
     1681 ttggacatcc gcacgcagaa gtagtcgaac gttggaaaat gagcggcgcg gaggtgttga
     1741 cgaccggacg gagtggaacg attagcgtaa cgacggatgg aaaggaattg tggttgaaga
     1801 aattcgtgaa ttagttgttt gacaggattg cagaatgaac aaggctta
//
LOCUS       DATCGC010000380         1145 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_338020, whole genome shotgun sequence.
ACCESSION   DATCGC010000380 DATCGC010000000
VERSION     DATCGC010000380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1145)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1145)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1145
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_338020"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            255..1124
                     /locus_tag="VIJ87_03645"
     CDS             255..1124
                     /locus_tag="VIJ87_03645"
                     /inference="COORDINATES: protein motif:HMM:NF017970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1003 domain-containing protein"
                     /protein_id="HEY5443559.1"
                     /translation="MSNPASQMTLEALRSVPLFASLDDQAAADLRNLLSEQNVTRNTR
                     LFRHGEKGDAMYLIESGRVRISIEDEEKNEVTLAELAQGDFFGEMSLIDGRQRSADAH
                     VIEDGRLAILSRDSFLAFVRDNPDVALKMLSALSERLRRTDELLRSRVSKNVNEEEQA
                     RQTVADRAADLIAEFGGSWKFIGVSIGLIVFWIIFNSYILVKGFDPLPFQMLNLVLAV
                     IAGMQAPIIMMSQNRQGEKDRLRADLDYQVNLKNELSLAELLRRLDVLESERLPKLFE
                     EQNRIVEQLKAER"
BASE COUNT          278 a          247 c          322 g          298 t
ORIGIN      
        1 cgatccttat ggtgactcac gaccaggaac tggcaaagag cttcgctgat cgaatcgtgt
       61 ttatgaaaga tgggaaagtg gtttgaagga tttcggattt ggaattttcg gattgcggat
      121 ttcgtgttgg ttgactggct agtacttcgc gtgggttagt ttgtatcgca ggagcttctg
      181 tgcaaagacg aaatccgcaa tccgaaattc caaatccgaa atttatcttg ctccccactc
      241 gctaggagaa ctgtatgtcc aaccccgcaa gtcaaatgac cctggaggcg ctgcgctcgg
      301 tgccgctttt tgcctcgctt gatgatcagg cagccgctga tttgcgcaat ttgctctcgg
      361 aacagaatgt cacgcgaaat acccgtctct ttcgtcacgg tgaaaaaggc gacgcgatgt
      421 atttgattga gagtggtcgc gtccgaataa gtatagagga tgaagaaaag aacgaggtga
      481 ctctggctga actggcgcag ggcgacttct tcggtgagat gtcgctgatt gatggtcgcc
      541 aacgttccgc tgatgcccat gtcatcgagg acggcagatt ggccattctc tctcgcgact
      601 cgtttctcgc tttcgtccgc gacaatccgg atgttgcttt gaagatgcta agcgcgttga
      661 gcgagcgact acgacgcaca gatgaattgc tccgttcgag ggtttcgaag aacgtcaacg
      721 aggaagaaca agcgcggcag accgttgcgg atcgcgctgc ggatttgatt gccgagtttg
      781 gtggtagttg gaaattcatt ggcgtctcaa taggtctgat tgtcttttgg ataatcttca
      841 actcatacat cctcgtgaag gggtttgatc ctttaccttt tcaaatgctg aacctggtgc
      901 tggctgtgat cgctggaatg caggcgccaa tcataatgat gtcgcaaaat cggcagggcg
      961 aaaaagatcg gttgcgagcg gatttggatt accaggttaa cttgaaaaat gaactatcgc
     1021 tcgccgaact gctacgacgt ctcgatgtac ttgagagtga gcgactgccg aagttgtttg
     1081 aagaacagaa cagaattgtt gagcagctaa aggcggaaag atgatctcag ggaaagaatg
     1141 atctc
//
LOCUS       DATCGC010000381         1104 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_471293, whole genome shotgun sequence.
ACCESSION   DATCGC010000381 DATCGC010000000
VERSION     DATCGC010000381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1104)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1104)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1104
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_471293"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..262
                     /locus_tag="VIJ87_03650"
     CDS             <1..262
                     /locus_tag="VIJ87_03650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443560.1"
                     /translation="KTSVVSGLRALVANVMLERARELTGPQALELWRLTQLIDTGASL
                     EALPRAMLQMAMDFNRFPHARRIVEEKALAQDRATDELDTID"
     gene            892..>1104
                     /locus_tag="VIJ87_03655"
     CDS             892..>1104
                     /locus_tag="VIJ87_03655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443561.1"
                     /translation="MRWRHGSSRHSMSKFTRNPEVNRVNALGLCQERRKKNLELDANM
                     CDILVELIKTGSLSTQSRIATYEAHCN"
BASE COUNT          253 a          290 c          300 g          261 t
ORIGIN      
        1 taaaacttcc gtagtttcag gtctccgcgc gttggtggcg aatgtaatgt tagaacgggc
       61 gagagagtta accggcccgc aagctctaga actctggcgc ctgacgcaac ttatcgacac
      121 tggcgcatcg ctcgaagcac taccccgcgc aatgcttcag atggcgatgg acttcaatcg
      181 ctttccgcat gctcggagaa ttgtcgagga gaaggctctc gcccaggacc gtgctactga
      241 cgagctcgat actattgatt aacttcgacc ggacattacg agcttgtggt ccgctgagcg
      301 tcatggagta gggtgttcct acatacgagc tgggtgtaac tctacatcct tgcagccttg
      361 tgaacgactc gtcttcatcc caggccaccc attttcgcgg attgataagc ggccgattct
      421 aactctctca ctcgaggcca gcacgcatcg ccattttttc gacacagtgt cctgtcaggt
      481 cttcgacgga acccgactct gcttagcctc gcattgggcc tggttggtgt gatttgtcac
      541 agtcgcggga cgatgtcgcg cttgcatagg gctggctcgc atcttgcaaa gcagcgttag
      601 cgtgcgtttg cgcgtttacg acgaggagac aaatcatgag tgcttgcaca atatgtgcat
      661 ctctgactag ggaacgactt gaatcgcacc ctgcgcttcg gcgtcgaggc gtcagccacc
      721 ggttcttgga ggtgttcgaa tcctatgtgt gctcggattg cggcgctaac tgggagcgca
      781 cagtccttaa tgaggacacg cgggctggta attaccgatg gacattgaca gcggaatcca
      841 atatcccggc cgctgtaagc attcccgatt acggctgcat ggagcttgac catgcgttgg
      901 cgtcatggat caagccgtca ttcgatgagc aagttcacgc gtaatcctga agtgaatcga
      961 gtcaatgcgt tagggctctg ccaagaacgc cgaaagaaaa acctggaact agacgcaaat
     1021 atgtgcgaca tactcgtaga gctgataaaa acaggcagtc tttcaacaca gagcaggatt
     1081 gccacttacg aagcacactg taat
//
LOCUS       DATCGC010000382         1508 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_171919, whole genome shotgun sequence.
ACCESSION   DATCGC010000382 DATCGC010000000
VERSION     DATCGC010000382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1508)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1508)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1508
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171919"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..354
                     /locus_tag="VIJ87_03660"
     CDS             <1..354
                     /locus_tag="VIJ87_03660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443562.1"
                     /translation="SSGNKDAGKEDKPGSWLILEKSSSNQPHEVDEPDFDRIYVLGYD
                     KRNQEHYTAYRSPDLKGFLPAKVEGQGENKTFTLRLQDEGSATKDVQYSLYKDARGVL
                     KVTPPNVVPKDKKRK"
     gene            365..985
                     /locus_tag="VIJ87_03665"
     CDS             365..985
                     /locus_tag="VIJ87_03665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443563.1"
                     /translation="MGRPFIVGVGGFTSNVGKTTLMCELLKAFPGWEAIKTTRGHYRS
                     CGKDSEACCVSHLLNHEPLIRSGRDDTYELGKDTGRYWDAGASNVHWLIATDNQIDQG
                     IREALSRVRSEGVFVEGNSFSQFVETDYFVMVKSAGSDSIKKSAKAIVSNVESVYLSE
                     FGSTASENDKPENLINDRPPFTHITLPSLILEVRRALTDIAAVVHS"
     gene            1002..>1508
                     /locus_tag="VIJ87_03670"
     CDS             1002..>1508
                     /locus_tag="VIJ87_03670"
                     /inference="COORDINATES: protein motif:HMM:NF014693.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formylmethanofuran dehydrogenase subunit E
                     family protein"
                     /protein_id="HEY5443564.1"
                     /translation="MESLDQLLTECEALHGHMCAGQLLGARMAMLGCSLVGVNEPRGV
                     DRKKLIVWVEIDRCMADAVSAVTGVRLGKRTLKYVDYGKVAATFLNTTSNKSVRIVAL
                     DTSRQLANDRYPEISDKRERQFRAYSEASDEELFRIDEVSITLADTDLPGSPRSRAVC
                     EHCGEGIND"
BASE COUNT          387 a          332 c          432 g          357 t
ORIGIN      
        1 agcagcggca acaaggatgc gggcaaggaa gacaagccgg gtagctggtt gatcctcgag
       61 aagagcagtt cgaaccagcc gcatgaagtt gacgagcctg atttcgaccg catttacgtg
      121 cttgggtacg acaaacgcaa ccaggagcac tacactgcgt accgaagtcc ggatctaaaa
      181 ggcttcctgc ctgcgaaagt cgaaggacaa ggtgagaaca agacgttcac ccttcgctta
      241 caggatgagg ggagcgcaac caaggatgtg caatacagtt tgtataaaga cgcgcgcggg
      301 gtgttgaagg taacgcctcc caacgttgtt ccgaaggaca aaaaacgaaa gtagcgctgt
      361 tgtaatgggt cgccctttta ttgtcggagt tggagggttt acctcaaatg ttggcaagac
      421 gaccttgatg tgcgaattgc taaaagcgtt tccgggctgg gaagcgatca aaacaacgcg
      481 cgggcattat cgttcgtgtg ggaaagattc agaggcatgc tgcgttagcc acttactcaa
      541 ccacgaaccg ctgattcgct ccggccgtga cgacacctat gaacttggta aagacacagg
      601 taggtactgg gacgcgggcg catcaaatgt gcattggctt attgcgacgg ataaccagat
      661 tgaccagggg atcagggagg ccttgagccg agtacgttcg gaaggggtct ttgttgaggg
      721 aaatagcttt tcacagtttg ttgaaactga ttactttgtc atggtgaaaa gtgccggctc
      781 tgacagcatc aagaaatcag ctaaggcgat agtttcgaac gtggagtcgg tgtatttgtc
      841 cgagtttggc agcacagcct ctgagaatga caaacctgag aacctcatca acgaccgacc
      901 tcctttcacc cacataaccc ttccttctct tattctagaa gtgcgccgag cgctcactga
      961 tatcgcagcg gtagtccatt cttaagttct gtgtacaagt tatggagtct ttggaccaac
     1021 tattgacgga gtgtgaagct cttcatggtc acatgtgtgc gggccagcta ttgggtgcgc
     1081 ggatggcaat gcttggttgt agcctggttg gcgttaatga acctcgaggc gttgatagaa
     1141 agaagctgat tgtttgggtc gaaattgatc gttgtatggc cgatgctgtt agcgctgtga
     1201 ctggggtgag gctcggaaag cgaactctga agtacgtcga ctacggaaag gtcgctgcaa
     1261 catttcttaa tacgacaagt aacaagtctg tgcgcattgt cgcgctcgat acttcaagac
     1321 agctggcgaa tgatcggtat cccgaaattt cggataagcg ggagcgtcaa ttcagagctt
     1381 attctgaagc tagtgacgaa gaactatttc gaattgacga ggtcagcatc acgcttgctg
     1441 acacggatct tccgggtagc cctcgatcac gagctgtttg tgagcactgt ggagaaggaa
     1501 tcaacgat
//
LOCUS       DATCGC010000383         2238 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_404730, whole genome shotgun sequence.
ACCESSION   DATCGC010000383 DATCGC010000000
VERSION     DATCGC010000383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2238)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2238)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2238
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_404730"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1808)
                     /locus_tag="VIJ87_03675"
     CDS             complement(<1..1808)
                     /locus_tag="VIJ87_03675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443565.1"
                     /translation="MSKLTKHRVLTTSFFAVTLIAVSIFASLAFAQRRAVPKSESEKP
                     VTRSKSSREKREEAERLRNARKSQNISQGSEITEITRVSVAPIKPKIFHGDLRRLPFV
                     KEKVKGERPEPQEPEVASKLTGEPDAALQTFLPAAPAPTPSASFPGLDFANWGAGWPP
                     DTNGDVGPNHFIQTVNTSIGIYDKATGTRLAAFTFDQFFSQSPTGTPCDNANQGDPVV
                     LYDALSDRWIITDFAWSNYTSGAMYQCMAVSQTGDPVSGGWYFYPWQTAAGGKIPDYP
                     KLGVWPDGIYMSANVFNTTGAGSFQNVQTWAFNRAEMETGGTAHAVSFSLPSQIAGST
                     IFSLLPSNLRNNGSSLPAGTSNYFASLWAPTNRVRVWKFHVDYAVPANSTFTGPTAVT
                     IATFNPGPATAPEQTGNNLDTLAPRAMMQNQYQNVGGTESIWLTHTVGNGGAPNVAQI
                     RWYQLDVTGGTIVTAAPVQQGTWAPDTKYRYMPSLALDKLGNMALGYTVSDSTTFPAI
                     RYAGRLSTDALNTLGQGETSLIDGTGYRCCLFGDGTTNTRWGDYSAMSIDPDGCTFWY
                     TNEYYDTSPATLAQDNWKTRIGAFKFPGCVPNSVGT"
     gene            complement(1832..>2238)
                     /locus_tag="VIJ87_03680"
     CDS             complement(1832..>2238)
                     /locus_tag="VIJ87_03680"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5443566.1"
                     /translation="LGMMLYYGIVPGWAIVTLPGFILLAVLTALGVGLWLSALNVQYR
                     DVRYTIGFLVQLWLFLTPVAYPSSIVPEKWRPLYGLNPMAGVVEGFRWALLGKSQPPG
                     AMLWVSVAVVIVILFGGLYYFRRMEQQFADIV"
BASE COUNT          531 a          586 c          605 g          516 t
ORIGIN      
        1 aaagtcccaa cagaatttgg aacacatcca ggaaacttga atgcgccgat tcgagtcttc
       61 cagttatcct gcgccaaagt ggcaggtgac gtgtcgtagt actcgtttgt gtaccagaaa
      121 gtgcaaccat caggatcgat cgacatcgca ctgtaatcac cccaacgggt attagtagtg
      181 ccatcgccga agaggcaaca ccgataaccc gttccgtcaa ttagcgacgt ctcaccctgg
      241 cccaacgtgt ttagcgcgtc cgttgacaaa cgacctgcat aacgaatggc ggggaaagta
      301 gtcgagtctg agacggtata tcccaacgcc atattaccga gcttgtcgag cgcaagactg
      361 ggcatgtaac ggtattttgt gtcgggtgcc cacgtgccct gctgaaccgg cgcggcagtc
      421 acaatcgttc cgcctgtgac gtccaactga taccagcgaa tttgcgcaac gtttggagcg
      481 ccaccgtttc cgacggtatg agtaagccag attgactcgg tgccgcccac gttctgatat
      541 tggttctgca tcattgcgcg tggcgccaga gtgtcgaggt tatttcctgt ttgttcggga
      601 gccgtggcgg gtccagggtt aaaggtggcg attgttacgg cggttggccc agtaaaggtt
      661 gaattcgccg gcactgcgta atcgacgtgg aatttccaaa cacgcactct gtttgtggga
      721 gcccatagcg atgcgaagta attggaggtt cctgcgggca agctgctgcc gttattgcgg
      781 agattgcttg gcagcaaact gaaaattgtc gaaccagcaa tctggcttgg caaactaaaa
      841 ctcaccgcat gggccgtccc tcccgtttcc atttcagcgc gattgaaagc ccaggtttga
      901 acattctgaa acgagccggc accggttgta ttgaagacgt ttgcagacat atagattcca
      961 tccggccaaa cgccgagttt cggatagtcc ggaatctttc cgcctgccgc ggtctgccat
     1021 ggatagaagt accaaccacc tgaaactgga tcgcctgtct gcgaaaccgc catgcactgg
     1081 tacatggcgc ccgacgtgta atttgaccag gcgaagtcag taataatcca acgatcgctt
     1141 aacgcgtcgt aaaggaccac cgggtcgcct tggttcgcgt tgtcgcaggg cgttccagtc
     1201 ggtgactgcg agaagaattg gtcaaaggtg aaggcggcga gacgagtgcc ggtggctttg
     1261 tcgtaaatgc cgatcgacgt gttgaccgtc tggatgaagt ggttcgggcc aacatcgcca
     1321 tttgtatcag gcggccagcc agctccccag ttcgcaaagt ctagaccggg aaagcttgcg
     1381 cttggtgttg gcgctggagc tgcgggtaaa aaggtctgca gtgctgcgtc gggttcaccc
     1441 gtaagttttg atgctacttc cggctcctgg ggttctggtc gttcgccttt gaccttctct
     1501 ttcacgaaag ggagtcgacg tagatctccg tgaaagattt tcggtttgat gggtgccaca
     1561 ctgactcgag tgatttcggt tatctcggaa ccctgggaaa tattctgaga cttgcgcgcg
     1621 ttccttagtc gctctgcttc ctcgcgcttt tcacgagaac tttttgatcg agtgacaggt
     1681 ttctcgctct cgcttttggg aacagcccgg cgctgtgcaa atgcgagtga cgcaaaaatc
     1741 gacactgcga tgagtgttac agcgaaaaac gaagtagtga gaacacggtg cttagttagt
     1801 tttgacatag tgtctttgct ctaagttagt ctcaaacaat atccgcaaac tgctgctcca
     1861 tccgtcggaa gtagtaaagc ccaccaaaca agatcacgat cacgaccgca accgacaccc
     1921 acaacatcgc acctggcggt tgcgactttc cgagtaatgc ccagcgaaaa ccttcaacca
     1981 ctccggccat agggtttagt ccatacaacg gtcgccactt ctcgggaacg attgaactcg
     2041 gatacgcaac cggagttagg aatagccaga gctgtaccaa aaaaccgatc gtgtaacgaa
     2101 cgtcgcgata ttgaacgttc aaagctgaaa gccagagacc gacgccaagc gctgtcagaa
     2161 ctgccaacag gatgaaccct ggcaaggtca cgatggccca cccgggaacg attccgtaat
     2221 aaagcatcat ccctagaa
//
LOCUS       DATCGC010000384         1206 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_72392, whole genome shotgun sequence.
ACCESSION   DATCGC010000384 DATCGC010000000
VERSION     DATCGC010000384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1206)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1206)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1206
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72392"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1080)
                     /locus_tag="VIJ87_03685"
     CDS             complement(<1..1080)
                     /locus_tag="VIJ87_03685"
                     /inference="COORDINATES: protein motif:HMM:NF012593.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HEY5443567.1"
                     /translation="MTRSTRNILIGLGLGIATGLFLGDRAGFLKFVAEAYVRLLQMTV
                     LPYLIVSVVRGFGSLDTSKAGQLFLRVGILTVVLWGLTLALVFVMPLAFPTVVTASFF
                     SNTLVDEQPTLDFISLYIPTNAFESLANNVVPAVVLFSGFVGIALIGIKQKEPLLSWL
                     EVVENVLDRANKFAVRLTPIGLFAIAANTVGTLDTDQMGQLRVFLIGYGAMSLLLTLW
                     ILPGLVACLTPIPARRVLECTRDALITAFITGQLFVVLAILVDRSKELLKEQGFDEHE
                     DGEPADIIIPAFYNFPHVAKILSLSFILFAAWYSDTVLSIATRLQLSLASIVSLFGSA
                     NTAIPFLLDLAHVPSDTFQLFLATGI"
BASE COUNT          353 a          299 c          311 g          243 t
ORIGIN      
        1 aatgccggtg gcaaggaaca gttgaaacgt gtcggatgga acgtgcgcga gatctaataa
       61 gaaaggaatt gcagtgttag cactgccaaa caaactgacg atacttgcca ggctgagttg
      121 gagacgcgtc gcaatcgaga gaactgtatc tgaataccac gccgcaaaga gaataaagct
      181 cagtgagagt atctttgcga catgaggaaa gttgtagaaa gcagggataa taatatccgc
      241 cggctcacca tcttcgtgtt catcaaaacc ttgttccttc aacaactctt tggatcgatc
      301 gacaaggatc gccaacacca caaacaactg accagtgatg aaagctgtga taagtgcgtc
      361 acgagtgcat tccaaaaccc gacgtgcggg gattggcgtc aggcaagcta ccaagccagg
      421 gaggatccat agcgtgagca ataatgacat cgctccgtac ccaatgagga agacccgaag
      481 ttggcccatt tgatcagtgt ctaatgtccc cacagtattc gcggctatgg cgaacaatcc
      541 gattggcgtc agacgcactg cgaacttatt cgcccgatca agtacgtttt caactacctc
      601 caaccatgaa agcagcggct ccttctgttt gattccaata agtgcgatgc caacgaagcc
      661 gctaaacaag acaacggccg gcacgacgtt attcgcaagt gactcaaatg cgttggtcgg
      721 aatgtagagt gaaatgaaat cgagtgtggg ttgttcgtca actaacgtat tgctaaagaa
      781 cgaggctgtc accactgtag gaaatgccag cggcatcacg aagaccaggg ccagggttaa
      841 gccccataaa acaacagtga gaattcctac tctaagaaag agctggccgg ctttcgaagt
      901 gtccaggctg ccaaagcctc tgacgacaga gacgatcaga tatggcaaca cggtcatctg
      961 gagcagtcga acgtaagctt ccgcgacaaa cttcaggaat cccgctctgt ctcccaggaa
     1021 caatccggtc gcgattccaa gacccagtcc gatcaggata ttgcgcgtgg accgagtcac
     1081 acagctaacc tttcgactgg ttcaatcggc gtggtcaggg tcgtaggcag caccggagtc
     1141 gtgagccggt agtactcgcg caagagaatg atcgcaatgc caatagcgat taacacaaag
     1201 gcaatg
//
LOCUS       DATCGC010000385         1739 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_305723, whole genome shotgun sequence.
ACCESSION   DATCGC010000385 DATCGC010000000
VERSION     DATCGC010000385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1739
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_305723"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..656)
                     /locus_tag="VIJ87_03690"
     CDS             complement(<1..656)
                     /locus_tag="VIJ87_03690"
                     /inference="COORDINATES: protein motif:HMM:NF038402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helical backbone metal receptor"
                     /protein_id="HEY5443568.1"
                     /translation="MIPHTFKNSKFAIVVGSLVALVLALTMACSGSRTNVGNPSAIGK
                     EVIDDAGRRIVLPDRVDRVVSLAPNLTEIVFAVGAGSSLVGDTSYCDFPAEAKSIEKV
                     GDTLHPSLERIISLKPQLVLVSTASQLEGFTEQLKSHNISVFVTDPHDLEGVFRSITQ
                     IGDILGKSQAAAELVSSLRARSTAVETFVKPLARVRIFYQLSAEPLYTAGHDSFVTDL
                     "
     regulatory      complement(756..886)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            complement(1008..1505)
                     /locus_tag="VIJ87_03695"
     CDS             complement(1008..1505)
                     /locus_tag="VIJ87_03695"
                     /inference="COORDINATES: protein motif:HMM:NF015060.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TspO/MBR family protein"
                     /protein_id="HEY5443569.1"
                     /translation="MPTIYAVTVSFVICAIAAALEGACAGKNVKSFFERLQSPAYAPP
                     LWVWYIIGIVYYATFVFVLYRILSLNSDSILKLVTLSLIVFMMTANALWNYVFFRARK
                     LFLAFVTGSAAPVFDALLFVCLLRLDSLAAWTLIPYLLYRVYAVWWGCALWKLNRTLE
                     SSPCR"
BASE COUNT          493 a          425 c          443 g          378 t
ORIGIN      
        1 atcaagtctg ttacaaatga atcgtgtccg gcggtgtaca acggttcagc agagagttga
       61 tagaagatcc ggacgcgagc cagtggtttg acgaaagtct caacagcagt tgagcgcgca
      121 cgtaaactgg agacgagttc cgcagccgcc tggctcttac ccaaaatgtc gccgatctga
      181 gtgatggatc taaatacgcc ctcgagatcg tgtgggtccg ttacgaaaac ggagatgttg
      241 tgactcttaa gctgctcggt gaatccttca agctgagacg ccgttgagac aagaactagt
      301 tgaggtttta gtgagatgat tcgttcgagg ctgggatgga gtgtgtcgcc taccttctcg
      361 atggactttg cttcggctgg aaaatcacaa tacgaggtat cgccaaccag gctactgccg
      421 gcgccgacag caaatacaat ttcagtcagg ttgggagcaa gagagacaac tctatcaacc
      481 cggtcaggta agacgattcg tcgtccagcg tcgtcaatga cttctttccc aatcgccgaa
      541 ggattgccga cgttggttct cgaacccgag catgccatcg tcaacgcgag aactaatgcg
      601 acaagactgc cgacaacaat ggcgaactta ctatttttaa atgtgtgtgg aatcacgaaa
      661 cccacctacc tcggatttcc ggcaaggcaa acaggcttca gtcgggactt gagagatgta
      721 ccgcggctgc ctggaacacc tttgcgcggg tgttaagagg ctgcaagcgt ttgggcaggt
      781 ctcctggctt agagaatgtt ctcatcacag tggcgcgacc gcgcgggatt ttcacccgct
      841 tccctattct ccccaacaaa ggggcaccca aacactatat tgaaaagaac ggacttaata
      901 attgatggac cggacactaa catgctgata aaagtggtgt caaaccaagt aatttctgag
      961 tcgtgtccta attcgagatt ggtctcagta gaatctggcc aacgttctta ccgacaaggt
     1021 gacgactcta gcgtgcggtt aagtttccaa agagcgcaac cccaccaaac ggcataaacc
     1081 ctgtacagca agtaagggat tagtgtccac gcagctaagc tgtccagccg cagcaagcaa
     1141 acaaacaaca gcgcgtcaaa cactggggcc gcgctgccag ttacgaacgc aagaaacaat
     1201 ttacgggcgc ggaagaaaac ataattccac agcgcgttcg cggtcatcat gaacacaatc
     1261 aggctcaagg tcacgagctt tagtattgaa tcggagttga ggctgaggat gcgataaaga
     1321 acaaagacga aagtcgcgta gtagacaata ccgattatgt accataccca aagcggcgga
     1381 gcgtaagctg gggactgcaa cctttcaaaa aaagatttta cgttcttccc tgcgcaagca
     1441 ccttccaatg cggctgcaat cgcgcatatc acgaaagaga cggtaacggc gtaaatagtt
     1501 ggcatgggtg tcggtgggcg atagtaagac actcaagaga cgaagaccac gccagaaatc
     1561 gaattccagt ttcagattag gacattacca atttctgacc aagcagtgtt tgcctcgtaa
     1621 tccagcgtcc agtaagatgc cgttttaatt caccatcaac aggacaaaga ctaatgatta
     1681 agactgtgga atggacaact gaaggcgttc gtatgctaga ccaacgcctt ctaccatcc
//
LOCUS       DATCGC010000386         1074 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_72492, whole genome shotgun sequence.
ACCESSION   DATCGC010000386 DATCGC010000000
VERSION     DATCGC010000386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1074)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1074)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1074
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72492"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..696
                     /locus_tag="VIJ87_03700"
     CDS             <1..696
                     /locus_tag="VIJ87_03700"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: protein motif:HMM:NF012699.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HEY5443570.1"
                     /translation="TNIAGHDADIELGIVGRISPHHPRLRFHRWQHFYLWPLYGLNVI
                     KWQLYDDFRDVILGRIGQHRMPRPKRWEWLRFTGAKAVFFAIAFVLPLMLHRPLTVCL
                     FYGVAVVTAGVVVSIVFQLAHCVEEADFPVPPTESRSIDNAWAIHQIETTVNFARRSR
                     VQSWLLGGLNFQVEHHLFPRICHVHYPQISKLVEQTCREYGVVYREHSSFRAGLASHF
                     RWLRRMGTATASS"
     gene            complement(786..>1074)
                     /locus_tag="VIJ87_03705"
     CDS             complement(786..>1074)
                     /locus_tag="VIJ87_03705"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5443571.1"
                     /translation="DASYLAELHRLKGELLLAQQLAGDAEECFKESIATAQRQHAKSW
                     ELRSATSLARLYHSQNKNDEARNVLRPVVSDFSEDHETKDLREANSLLAEL"
BASE COUNT          222 a          289 c          277 g          286 t
ORIGIN      
        1 acgaatatcg ccggccatga cgccgacata gaactgggaa ttgtcggccg tatctcgcca
       61 catcatcctc gtctgcggtt tcatcgctgg caacattttt acttgtggcc gttgtatggc
      121 ttgaacgtta tcaagtggca actctacgac gacttccgtg atgtcatact cggccggatt
      181 ggtcagcatc gcatgccccg gccaaagcgc tgggaatggc ttcgtttcac cggagccaaa
      241 gcagtgtttt ttgccatcgc tttcgtgctc ccactgatgc ttcaccgtcc cttgactgtc
      301 tgtctgtttt acggtgtcgc ggtagtcact gcgggcgtgg ttgtcagcat tgtctttcaa
      361 ttggcccatt gcgttgaaga agctgatttt ccggtaccac caacagagtc ccgatcgatc
      421 gacaatgcct gggccattca tcaaatcgag acgaccgtaa actttgccag acgcagtaga
      481 gtgcaaagtt ggttactcgg aggcttgaac ttccaggttg agcaccacct attcccgcga
      541 atctgccacg tccactaccc gcaaatctcc aaactagtcg aacagacttg tcgcgagtat
      601 ggagtggtgt atcgcgagca ctcatcgttt cgcgcgggac tggcttctca tttccgttgg
      661 ctgcgacgga tgggaactgc cactgcttcg tcttagcggg aaggtttgca attgaagatg
      721 gtaggggcgg cactctatgg ccgccctttt cttttaataa gcactaccgt gttgcgatac
      781 tgacctcata gctcagccaa cagcgagttg gcctctcgca gatctttcgt ttcatggtct
      841 tcgctgaagt cgctaacaac tggccgaaga acatttcgag cctcatcgtt tttgttctga
      901 gagtgatata gccgagccag actagtagct gagcgtaact cccacgactt cgcgtgctgc
      961 cgttgagctg tagcgatcga ctccttgaag cactcttcag catcaccagc taattgctgt
     1021 gcaagtaaga gttcgccttt gaggcggtgg agttcagcaa gatacgaggc gtct
//
LOCUS       DATCGC010000387         3991 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_172056, whole genome shotgun sequence.
ACCESSION   DATCGC010000387 DATCGC010000000
VERSION     DATCGC010000387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3991)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3991)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3991
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_172056"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(158..1030)
                     /locus_tag="VIJ87_03710"
     CDS             complement(158..1030)
                     /locus_tag="VIJ87_03710"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF004344.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HEY5443572.1"
                     /translation="MAKEKKEKKQDEVAPAVEETDTKTAFDRVLLARHADRPYTLDFI
                     ERLFEDFVELHGDKRFAEDPAIVCGLARFHGLPVVVVGHQKGRDTKQRSYRNFGMPKP
                     EGYRKALRVMKLGEKFGRPIFTFIDTPGAYPGIDAEERGQAEAIAYNLREMAKIKVPI
                     IVTVIGEGGSGGALAIGVGDQVMMLENATYSVITPEGCAAILWKDSAQAPRAAEELCM
                     TAQHLFAEKIIDKIIPEPEGGAHNDYEKTARYLDSALSERLAEAVSCTQEERLSRRYA
                     KLRQFGRWGTADPA"
     gene            complement(1054..>3991)
                     /gene="dnaE"
                     /locus_tag="VIJ87_03715"
     CDS             complement(1054..>3991)
                     /gene="dnaE"
                     /locus_tag="VIJ87_03715"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF004226.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HEY5443573.1"
                     /translation="LSKRTGVPLVATNDSHYLTPEDSRAHDVLLCIGSGKTVNDTNRL
                     RYASPNFYVRSPEEMWRIFGDELPEVLTRTVEIAERVDLSLPQNVNHLPNYPIPESEQ
                     GLSADDYFEKVVREGFERRRQTVWDLHESRGDLKYPISDYQTRLSHEIEMIKQMGFPG
                     YFLIVWDFVRYAKENSIPVGPGRGSAAGSLVAYCLEITDVDPIQYNLLFERFLNPGRV
                     SLPDIDIDFCVRGRGDVINHVADLYGRDSVCQIITFGTLASKAAIKDVGRALEVPYAE
                     VERIAKMIPPPVRGRNVSISQALEQVPELKREVETNPQVKEIIEIARRLEGCARHSSV
                     HAAGVVISPLPLQELIPIAVSGKEELTTQYPMSDLEKTGMLKMDFLALTALTVINDCL
                     ISIKQLLGTEISWAETALNDAKTMQVFGEGRTEAVFQFESSGMQEICRKLKPKGVEDL
                     AALNALYRPGPLDGGMVDEFILRHHGKKSVRYLVPEMKEILSNTYGIIVYQEQIMQLA
                     QRLAGYTLSEADLMRRAMGKKKREEMAVHEEKFITGAVERGIKREKAEKIFSLMAQFS
                     DYGFNRSHSVAYAYLAFQTAYLKAHFAEHFYAAVLSSEAQDAAKVFKYSKELRAQKIS
                     LLPPDVNESNSGFTPLSSAIRYGLTAIKGLGNSAVKAICEAREAGPFRSFFDFAERVD
                     TATLNKRVLESLVSAGAFDSVKDGRAASEWRGALFGLIDTALARAQRAKRERVQGQTG
                     LFGTVPDEVDYANEIAPNAKGWSTAEMLAAEKAALGFYITGHPLERHFELLQSLKAAK
                     STELPSLTTGSKVVAGGIIGDLQIRTTKKGDKFALLRLEDEAGGTKCVLWPEVYRKHA
                     GVLQNDLPAIIKGRLELSEDNPPTIIVDHVQTMEAASENTEFVVLRAPKQDDFTALFD
                     SILSVLSSSPGDCDVAVEAQVNEDTIVRIRANPALRIKRSVQLEDSLKQLGCQVNVEK
                     ITQTRA"
BASE COUNT          901 a         1120 c          988 g          982 t
ORIGIN      
        1 agtgtgtcct ggcgacttcg gtacgactgg gtgacacaac tgcctattcg aaagtgagcg
       61 agatctcact ccaagtgatt gttttggcaa cgcgtgttta ggggtggaat ccgaggaggg
      121 cgtccctcaa ctcctaatta cagacttgaa ccgatcacta cgcagggtct gcagttcccc
      181 aacgaccaaa ctgtcgaagc ttggcgtaac gacgtgagag gcgttcttcc tgggtgcaac
      241 tgactgcttc ggctagacgc tcacttaaag cggagtcgag gtagcgagcg gttttttcgt
      301 agtcgttgtg cgcaccacct tcaggctcgg gaattatttt gtcgatgatc ttctcggcaa
      361 agagatgttg cgccgtcatg caaagctctt cggcagcgcg cggtgcttga gcagagtctt
      421 tccacagaat tgccgcacaa ccttctggcg tgatcacgga ataggtcgcg ttctcgagca
      481 tcataacctg atcgccaact cctatggcga gcgctccacc tgagccacct tcaccaatca
      541 cagttacgat aatcggaacc ttgatcttcg ccatctcgcg gaggttgtac gcaatcgctt
      601 ctgcctgccc gcgttcctca gcatcaattc cgggatacgc gccaggagtg tcgatgaacg
      661 taaaaattgg gcggccaaat ttctctccaa gtttcattac tcttagggct ttgcggtagc
      721 cctccggctt gggcatgcca aagtttctgt aactgcgttg tttcgtgtct ctccccttct
      781 ggtgaccgac aacaacgacc ggcaacccat gaaaccttgc gaggccacat acaatggctg
      841 gatcctcggc aaacctcttg tcgccgtgga gctcgacgaa gtcctcaaac aagcgttcga
      901 taaagtccag tgtgtaaggg cgatcagcgt gtctggcgag cagcactcga tcaaaagcag
      961 tcttcgtatc tgtctcttcg accgctggag ctacctcatc ctgcttcttc tcttttttct
     1021 ctttagccat ctttcgtttc tcgcgaccga cgctcacgct cgagtttgag tgatcttttc
     1081 tacattcacc tggcagccaa gctgcttcaa cgagtcttcc aattgaacac tgcgtttgat
     1141 tcgaagcgct ggatttgccc tgattcgaac gatcgtgtct tcgttaactt gggcttcaac
     1201 cgctacgtca caatcaccag gacttgaact caacacgctc aggatcgaat cgaatagcgc
     1261 tgtaaaatcg tcctgctttg gcgcacgcag cacgacaaac tcggtgtttt cagatgctgc
     1321 ttccattgtc tgaacatgat cgacaatgat cgtcggggga ttgtcttcac tcagttcaag
     1381 gcgccccttg atgatagccg gaagatcatt ctgaagcacc ccggcatgct tgcggtagac
     1441 ctcgggccaa aggacgcact tggttccacc cgcttcgtcc tccaaacgga gtagcgcgaa
     1501 cttatctccc tttttcgttg tgcgaatctg taagtcacct atgattccgc ccgcaaccac
     1561 cttcgagcca gtggtcaggc tcggaagttc agttgacttg gctgccttta gactttgcag
     1621 cagttcaaag tgtctctcta atggatgacc agtgatgtag aaacctaaag ctgctttctc
     1681 agcagccagc atttcagccg tcgaccagcc cttcgcatta ggagcaatct cgttggcgta
     1741 gtcgacctcg tcgggaacag tgccaaacag cccggtctgg ccctgaacac gttcgcgttt
     1801 ggcgcgttga gccctggcca aagcagtatc aatcaacccg aacaaagcac cgcgccattc
     1861 gctagcagct cggccgtcct tcactgaatc aaaagcgccc gcactgacca agctctccaa
     1921 cactcgtttg tttagcgttg ccgtgtctac acgctccgcg aagtcgaaaa acgaacggaa
     1981 cggtccggcc tcccgagctt cacaaatagc tttaactgcg gaattgccca agcccttaat
     2041 cgcagtaagc ccataccgga tggcgctgct taaaggggtg aacccggaat tactctcgtt
     2101 cacgtctggt gggagcaagc ttatcttttg ggctcgcagt tctttggagt acttaaacac
     2161 tttcgcagca tcctgcgcct cgctggaaag gactgccgca tagaaatgct ccgcgaaatg
     2221 agccttcagg taggccgtct gaaacgctag ataggcatat gcgacgctgt ggcttctatt
     2281 aaacccgtag tcggagaact gagccattag agagaatatc ttctctgcct tctccctctt
     2341 gatcccgcgc tcgacggcgc cggtaatgaa cttctcctca tgaaccgcca tttcttcgcg
     2401 cttcttctta cccatggcgc gtcgcattaa gtcagcctcg ctaagtgtat aacccgcaag
     2461 cctctgcgcc agctgcatga tctgttcttg ataaacgatg atgccgtagg tattgctgag
     2521 aatctccttc atctccggca ccagatatcg aacactcttc ttgccatgat gacgcaaaat
     2581 aaactcgtca accatgcctc cgtctagagg accaggccga tagagcgcat taagcgccgc
     2641 cagatcttcg acgcccttcg gtttcagctt ccggcaaatc tcctgcatcc cagacgattc
     2701 aaactggaag accgcttcag tccttccctc cccaaacact tgcatagttt tagcgtcatt
     2761 aagcgctgtc tcggcccagc taatctccgt tccaagcagt tgtttaatgc taattaagca
     2821 atcatttata acagtcaaag cggtaagcgc taaaaagtcc atcttaagca tgcccgtctt
     2881 ttcgagatcg gacatggggt attgggtagt gagttcttcc ttacccgaga cggctatcgg
     2941 gattaattcc tggagtggta gcggcgaaat cacgactccc gcagcgtgca cggacgagtg
     3001 ccttgcgcaa ccttcgagtc ggcgggctat ctcaattatc tctttaacct gcggattggt
     3061 ttcgacctca cgttttagtt caggtacttg ttcaagggct tggctaatcg aaacgttcct
     3121 gccgcgaacc ggtggaggaa tcattttggc gatccgctca acctcggcgt acgggacttc
     3181 aagtgctctc ccaacatcct tgatagcggc cttggaagcc agggtcccaa acgtgatgat
     3241 ctgacaaacc gagtcgcgcc cgtaaaggtc ggcaacgtgg ttgatcacat cacctcgacc
     3301 ccgaacacag aaatcgatgt caatgtcagg cagtgagacg cgcccggggt taagaaaccg
     3361 ctcgaacagg aggttgtact ggattgggtc aacgtcggtg atctcaaggc agtaggcgac
     3421 cagagagccg gcagcagagc ctcgcccggg gcccacgggt atcgagttct ccttcgcata
     3481 tcggacgaag tcccagacaa ttaggaaata tccgggaaat cccatctgtt tgatcatctc
     3541 gatttcgtgc gagagtcgag tctgataatc gctaatggga tactttagat ccccacgcga
     3601 ttcatggagg tcccaaacag tttggcggcg acgctcaaac ccctcgcgaa cgactttctc
     3661 gaaataatcg tcagctgata ggccttgctc agactcagga ataggatagt tcgggagatg
     3721 attgacgttc tgtgggagac tcagatcgac tcgttcggcg atttcaaccg ttcgggttaa
     3781 aacctcaggc agttcgtcac cgaaaatccg ccacatctcc tcaggcgagc gaacgtaaaa
     3841 atttgggctt gcgtaacgca gtcgatttgt atcgttgacg gttttgcccg aaccgatgca
     3901 gagcaagacg tcgtgcgccc gtgaatcttc aggcgtcagg tagtgcgaat cgttcgtagc
     3961 caccagcgga acaccggttc gctttgaaag a
//
LOCUS       DATCGC010000388         3051 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_271651, whole genome shotgun sequence.
ACCESSION   DATCGC010000388 DATCGC010000000
VERSION     DATCGC010000388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3051)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3051)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3051
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271651"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(227..2059)
                     /locus_tag="VIJ87_03720"
     CDS             complement(227..2059)
                     /locus_tag="VIJ87_03720"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY5443574.1"
                     /translation="MSTAAKQFHEEEAIGKTYDFQVARRLLRYLKPYLRFLAPALVLT
                     LALNLLGVLQPKFTQYAIDWYILPRKLDGLLLLVMLFFGAQLFRFIFSYFQSILLNSV
                     GQYVMFDIRRELYDKLQHQEIAYYDRNPVGRIMTRLTADVDALNELFTQGVTDLLGDL
                     VMIVAIISVMLWMDVRLTLVTLLTVPMLFAATTWFRRGARKGYDMVRTRIARINAFLQ
                     EHIAGAQTVQIFNAEEKSLRKFDEINDDHRRANIETIWYYAVFFPMVDFIGAVGIALI
                     IWYGGYRVMQNTAGHTVLTLGALVAFIQYSGFLFQPIRDISDKYNVLQAAVVASHRIF
                     RTLDLPIAIVSPSTPKKADRASGRIEFQNVWFAYKDDNWVLKDVSFAVEPGQSVALVG
                     HTGSGKTTITNLLMRFYDIQRGRILLDGVDIREWDLKALRENFAVVLQEVFLFSGTIA
                     GNIRLGRNDISDERIEWAAEEVHADRFIERLRDRYKAEVRERGAGLSVGQKQLISFAR
                     ALAFDPALLILDEATSSIDTETEQLIQRAIERVMRDRTSIVVAHRLSTIQNANRIIVL
                     HHGEVREQGTHQELLTHRGLYWKLYKLQYADGMSDKLQFVDVAD"
     gene            complement(2065..>3051)
                     /locus_tag="VIJ87_03725"
     CDS             complement(2065..>3051)
                     /locus_tag="VIJ87_03725"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY5443575.1"
                     /translation="FVLIIWAGVPLAVRGEITVGQFAVFNMYLTRLIWPLIALGYVVN
                     LYQRGTASLKRLYTIFQIKPAIADVPRVQSQPVIKGCIEFRDLTFSYKRSDEPVLRGV
                     NLTIAEGQTVAIVGRTGSGKSTLANLIPRLIDAPDNTVFIDGIQVKEYPLAQLRASIG
                     YVPQETFLFSDTLKGNIAFGVEKADEPEVEWAAGVAGLAEDVEGFPDGFDALVGERGI
                     TLSGGQKQRTAIARAVLRQPKILILDDALSSVDTYTEEKILEQLRGVMRDRTSLIVSH
                     RISTVQSADIICVLDEGRIIEKGTHDELLALNGEYANLYERQLLEEELDAVT"
BASE COUNT          800 a          831 c          722 g          698 t
ORIGIN      
        1 cccgtgcgga aagcctccgg ctttccgtcg ccatttagaa aaggagaggc ttcgcctcgg
       61 cggcctagcc gccatgagag ttgttggctt gacggaaagc cggaggcttt ccgcacggga
      121 ggcggcaaag ccgcaaaggt cgagaagaag acgactcaca aacaaacacg aatgccacgg
      181 ataagtagac ttcataatcc gtggcatctg tgttttaagc tgaacctcaa tcagcgacat
      241 cgacgaactg aagtttatcg gacataccat cggcgtattg cagcttatac aacttccaat
      301 acaagccacg gtgcgtgagc aactcttgat gagttccctg ctcacgaact tctccatggt
      361 gcaacacaat aatccggttg gcgttctgaa tcgttgaaag cctatgggcc accacgatcg
      421 aagtacggtc gcgcattacc cgttcaatgg cacgctgaat cagttgttcc gtctctgtat
      481 cgattgaact cgttgcttcg tcgagaatga gtaacgccgg atcaaacgcc aacgcccgag
      541 caaaggagat caactgtttt tgtccgaccg ataatccagc tccccgttcc ctcacttcgg
      601 ctttatacct atctctaagg cgctcaatga atcgatctgc gtgcacctct tcggcggccc
      661 actcaattcg ttcatcgctt atgtcgttgc gaccgagtcg gatattcccg gcaatcgtgc
      721 cgctaaacag aaagacttcc tgaagaacga cagcaaagtt ttcgcgtaac gctttcaaat
      781 cccactcacg aatatcgaca ccatcaagca gaatcctgcc tctctgaata tcgtaaaaac
      841 gcatcaagag attcgtgatt gtcgtctttc cagaaccagt gtgtccgaca agcgcaaccg
      901 attgacctgg ttcgacagca aacgacacat ccttcaacac ccaattgtcg tctttgtaag
      961 caaaccagac gttttgaaac tcaatcctgc cgctcgccct gtcggctttc ttcggcgtcg
     1021 agggactgac aattgcgatg ggaagatcga gcgtgcgaaa gatgcgatgc gacgcaacca
     1081 ctgcggcctg gagaacgttg tacttgtctg agatatcgcg aataggctga aagagaaacc
     1141 ctgaatactg aatgaaagcc accagcgcgc ccaacgtcag gacagtgtgc ccggccgtgt
     1201 tttgcatcac ccgataaccg ccgtaccaga tgatcaaggc gattccaacc gcacctatga
     1261 aatccaccat cgggaaaaag actgcgtagt accagatcgt ctcaatgttc gctcgccggt
     1321 gatcgtcgtt gatctcgtca aacttccgaa gagacttctc ctcggcgtta aatatctgca
     1381 ctgtttgggc acccgcaatg tgctcctgaa ggaaagcatt aattcgggcg attcgcgtac
     1441 gaaccatgtc gtagcctttt cgcgctcccc ggcgaaacca tgttgttgcc gcaaacagca
     1501 tcggaaccgt aagcaaagta acgagtgtta gtcgaacatc catccataac atcaccgaga
     1561 taatcgctac gatcattacg aggtcgccca gcaggtcagt tacaccttgc gtaaacaact
     1621 cgttcaaagc atcaacgtct gccgtcaatc tcgtcatgat ccggccaacc ggattacgat
     1681 cgtagtaagc aatttcctgg tgttgaagct tgtcgtaaag ctcgcgcctg atgtcaaaca
     1741 ttacatattg accgacgctg ttcagcagga tcgactgaaa gtaggagaag atgaagcgaa
     1801 agagttgcgc tccgaaaaaa agcatgacga gaagcaacaa cccatcaagc ttgcgcggaa
     1861 ggatgtacca atcaatcgcg tattgcgtga attttggctg cagcactccc aacagattca
     1921 aagcaagtgt caggacgaga gcaggcgcta aaaagcgtag ataaggtttc aggtatctga
     1981 gtagacgtcg agcaacctgg aaatcgtagg tctttccaat agcttcttct tcgtgaaatt
     2041 gtttagctgc cgtcgacatc tgaattacgt caccgcgtcg agttcttctt cgagcaattg
     2101 tctttcgtag agattggcat actcgccgtt aagggcgagc agctcatcat gcgtaccctt
     2161 ttcgataatg cgaccttcat caagaacaca aatgatgtcg gcgctctgca cagttgagat
     2221 tcggtgggaa acaatcaaac tcgtacggtc gcgcatgacg ccgcgcagtt gttcaaggat
     2281 cttttcttct gtgtaagtgt caactgaaga caaagcatca tccaggatca agatcttcgg
     2341 ttgccgcaaa acagcgcgcg cgattgctgt cctttgcttc tgaccacctg acagggttat
     2401 gcctcgttcg cccaccaggg cgtcaaaacc atccggaaat ccttcaacgt cttctgctag
     2461 tcccgcaacg ccggccgccc attcgacttc aggctcgtca gctttctcaa cgccaaaagc
     2521 gatgttgcct ttcaaagtat cgctaaacaa aaacgtctct tgcgggacat aaccgatgct
     2581 ggcgcggagt tgggcgagtg gatactcctt cacctgtata ccatcgatga aaacagtgtt
     2641 atcgggcgcg tcaatcaaac gaggaatcaa gttggctaac gtcgactttc cgctgccggt
     2701 acgaccaaca atcgcaaccg tctgaccttc tgcgattgtc aggttcactc cgcgcaacac
     2761 gggctcgtct gaccgcttat aactaaacgt caaatctcgg aactcaatgc accccttgat
     2821 tacgggttgg gactggactc tgggtacgtc ggcaatcgca ggcttaatct ggaagattgt
     2881 gtagagccgc ttcaaactcg cggtgccgcg ctggtaaaga ttcacaacat aaccaagggc
     2941 gatcaacggc cagatcagcc gtgttagata catattgaac acagcaaact gtccaacggt
     3001 gatctctccc cgcaccgcaa gtggaacacc ggcccaaatt atcaaaacga a
//
LOCUS       DATCGC010000389         1465 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_205232, whole genome shotgun sequence.
ACCESSION   DATCGC010000389 DATCGC010000000
VERSION     DATCGC010000389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1465)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1465)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1465
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_205232"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            247..1356
                     /locus_tag="VIJ87_03730"
     CDS             247..1356
                     /locus_tag="VIJ87_03730"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013227.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HEY5443576.1"
                     /translation="MKHIPLVGLFVQYQQIKPEVDLAIKKVINTSAFVGGDEVRAFEE
                     EFASYCEVDHCVGVANGTDAIYLALRALGIGQGDEVITVSHTFIATAEGITLTGATPV
                     FIDIKEDTLLMDPSLLEAAITPRTKAVIPVHLYGQTCEMDEILRVARKHRLKVVEDAA
                     QAHGARWKGKRAGSMGDVGCFSFYPGKNLGAFGDAGGVVSNDKAITDRLRMIANHGST
                     TKYSHEIEGVNSRLDGLQAAILRIKLRRLDEWNAQRRKHASYYTEQLSNSPLTPASVH
                     SDAEPVWHLFVVRTNDRRGLQARLSEENIATGIHYPTPLHLQPAYEYLGVQPGTLPVT
                     ERIAEEIVSLPMYPELTTADLEAVVKTATSTPIEV"
BASE COUNT          388 a          363 c          373 g          341 t
ORIGIN      
        1 cactaaccta accactcaca tcttctcagt ggaacgtagt tttgaaaccg caagacaata
       61 gagatcaagc caagctcatg tcaatcctct catgaaccct cggaacaaaa ataacaaaaa
      121 tttgctattt gaccgttcag tgttgttgtc cccgaatacc ccactcgacg ccgagcgtat
      181 ttgcacagtc gctcaccgtt atgttttcct cggtggcgaa tttgaatcag tcgtcaaggc
      241 cccaacatga aacacattcc actagtagga ctgtttgtgc agtatcagca gatcaagccg
      301 gaagttgatc tcgcaataaa gaaggtcatc aacaccagtg cgtttgttgg cggggatgaa
      361 gttcgagctt tcgaggaaga gtttgctagt tattgcgaag ttgaccactg tgtcggcgtc
      421 gccaatggaa ccgatgcgat ctatctcgca ctacgagcac taggcatagg acagggcgac
      481 gaggtcatca ctgtttcgca cacctttata gccactgccg agggaatcac cctcacaggc
      541 gcgactcctg tgttcatcga cattaaggaa gatacgttgt tgatggaccc ttcactcctt
      601 gaagcggcga tcactccgcg tacgaaggct gtaattccgg ttcatcttta cggacaaaca
      661 tgtgagatgg atgagattct tcgcgttgct cgaaagcaca gactgaaagt tgttgaagac
      721 gcagcacaag ctcatggggc caggtggaaa ggaaaacgcg ccggatcgat gggcgacgtt
      781 ggatgtttca gtttctaccc gggtaagaac ctgggagcgt ttggcgacgc gggcggagta
      841 gtcagcaacg acaaggcgat tactgatcga ctgcgcatga ttgcgaatca cggcagcaca
      901 acgaagtact ctcatgagat cgagggtgtg aacagccggc tcgacggact acaagctgcg
      961 atcttaagaa tcaagttgag acgattggat gagtggaacg ctcaacgtag aaaacatgcg
     1021 tcctactaca cagagcaact gagcaactcg ccgctaacgc ctgcgtctgt ccattctgat
     1081 gcagaacccg tctggcacct atttgtcgtt cgcacgaacg atcgtagagg gttgcaagcc
     1141 aggttaagtg aagaaaatat cgcgaccgga attcactatc cgactccact tcatctccaa
     1201 ccagcttatg aatatctcgg ggttcaaccc ggcacgttgc cagttaccga acggattgca
     1261 gaagagatcg tgagtctgcc aatgtatcct gagttgacaa cggctgatct tgaagccgtt
     1321 gtgaaaaccg cgaccagcac tccgatcgaa gtttgaagac cagtttgcta gtgtcggtga
     1381 gtagcagtag ctaatgatgt ggagccttat caactctcga agatcgttcg caccttgtga
     1441 taagttccgc ggcttccctt ataga
//
LOCUS       DATCGC010000390         1312 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_271707, whole genome shotgun sequence.
ACCESSION   DATCGC010000390 DATCGC010000000
VERSION     DATCGC010000390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1312)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1312)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1312
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271707"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..445)
                     /locus_tag="VIJ87_03735"
     CDS             complement(<1..445)
                     /locus_tag="VIJ87_03735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443577.1"
                     /translation="MRDPLVKQLSTFVCSIGIMVEPCPIDWKTQFPGLDIRSGSVLVD
                     EDRLLHPGNILHEAGHIAVHEPVRRANAKFSPKRGEELSALAWSYAAIVKLNLSSELV
                     FYPGSFHGWSTALIDNFAEGRYVGVPLLQRYGMAFEPRIAIERGVD"
     gene            705..>1312
                     /locus_tag="VIJ87_03740"
     CDS             705..>1312
                     /locus_tag="VIJ87_03740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443578.1"
                     /translation="MTDSEDSTGKHADEKAAKKQRQEALPERLLRRVLEGMGDVVDRK
                     FGRTVDPRAGLTTSKLIERMKKLIDERTRDEGRKGRIAPHHLVLKVEWGTHSEAPPEI
                     LHDLKNEVLAAAIDHINDHRYRTLAPVTVEAEVDIFTTGISVDPNFGDFEDDLRKEDE
                     AKRAEKAGVTIPVAAPPMPDIEVIARVTQPNGSREIPLIFKPG"
BASE COUNT          347 a          356 c          333 g          276 t
ORIGIN      
        1 gatctacgcc tcgttcaatc gcaatccgcg gttcgaacgc cattccgtaa cgctggagca
       61 agggcacacc cacataccgg ccttcagcga aattatcaat caaggccgta ctccagccat
      121 gaaagctgcc tggatagaac acaagctccg aactcagatt aagtttgaca atggctgcat
      181 acgaccatgc gagcgcacta agttcttcac ctcgcttcgg ggaaaacttg gcattggcgc
      241 gtcgcacggg ttcgtgtact gctatgtgac ccgcctcgtg caggatattg ccgggatgta
      301 ggagtcggtc ttcgtcaacc agtaccgatc cgcttcgaat atcaagaccc ggaaattgag
      361 ttttccaatc gatcgggcac ggttcaacca taatgccgat cgaacaaaca aacgtagaca
      421 gctgtttgac caacggatct cgcatagttt cctgtgaagg gtcccctcag gatcttctac
      481 tacgttatcc cagtttaggc tagaataccg ccgacccagc aattatctct cttcaggcgc
      541 agtcaccaat tggactgcgt ttttagcgta tcaggtgcgg gtgcagtagc ccgactgtca
      601 aggatggctc acctggatcc tagtcgaccc gaaagccctc cttgaaagtc gggctactgc
      661 accgaggctg aacacgcgaa cgtcaaactc gtacttggta ctacatgaca gactccgaag
      721 actcaaccgg gaaacacgcc gacgagaaag cggcaaagaa gcagcgccag gaagctttgc
      781 ctgagaggct attacgtcgt gtcctggaag gcatgggcga cgtcgtggat cggaagttcg
      841 gccgaactgt cgacccaagg gccggattga ccacttcaaa gctcatcgaa cgaatgaaaa
      901 agttgatcga tgagcggaca cgtgatgaag gacgtaaagg aagaattgct ccacatcacc
      961 tcgttttgaa agttgaatgg ggtacacact ccgaagcgcc accggaaatc cttcacgatc
     1021 ttaagaacga agttttggca gcggctattg atcacatcaa cgatcaccgc tatcgcacgc
     1081 ttgctcccgt aaccgtcgaa gccgaggtcg atatctttac gaccggcatt tcagtcgatc
     1141 caaatttcgg cgactttgaa gacgacttac gtaaagaaga tgaagcaaag cgtgccgaaa
     1201 aggctggtgt aacgattccg gtagcggcgc caccaatgcc ggacattgaa gtcatcgcac
     1261 gcgtgactca accgaatggt agccgtgaga taccactgat cttcaaaccc gg
//
LOCUS       DATCGC010000391         1064 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_471469, whole genome shotgun sequence.
ACCESSION   DATCGC010000391 DATCGC010000000
VERSION     DATCGC010000391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1064)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1064)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1064
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_471469"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..414)
                     /locus_tag="VIJ87_03745"
     CDS             complement(<1..414)
                     /locus_tag="VIJ87_03745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443579.1"
                     /translation="MQILPAITVSVLLGATFLPQGFPWEIFKPRTLKEVISITSKAVR
                     PGDSMFLASNQLESKVEVVFTGQSRPIIKARKSFITMWVGTLRADQKGYDELYEREYL
                     YKEGPEEYWLATSKPITKYFDKDLKPGDKMDLYLIS"
     gene            complement(494..>1064)
                     /locus_tag="VIJ87_03750"
     CDS             complement(494..>1064)
                     /locus_tag="VIJ87_03750"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="isochorismatase family cysteine hydrolase"
                     /protein_id="HEY5443580.1"
                     /translation="LQSGIVSVYAPDGDLVTRAGTLLQHGRDVGLTIVHVKVGFRPGL
                     PEIHQRNMLLGGIKASPRHQELFTGSSGSIHPAVAPHEGDLVVTKSRINAFAGTDLAL
                     LLRAKDIDTLVLFGIATSGVVLSTTLAAADADYRLFIVKDCCADLDPAVHACLIEKVF
                     PRSATVLASDELLRMLATRPNKRLERTRR"
BASE COUNT          255 a          301 c          270 g          238 t
ORIGIN      
        1 cgagatgaga tacagatcca tcttatctcc cggcttcaaa tccttatcga aatacttcgt
       61 gattggcttt gaagtcgcca gccagtattc ttctggcccc tccttataga gatactcccg
      121 ttcatacagc tcatcatatc ccttctgatc agcccgaagc gtcccaaccc acattgtaat
      181 gaaactcttc cgagctttga tgattggacg agactgccct gtgaagacca cttcaacttt
      241 cgactcgagt tgattactag ccaggaacat ggaatcgcca ggtctcactg ctttgctggt
      301 aatagatatt acttccttca gcgttcgtgg tttgaagatt tcccacggaa acccctgagg
      361 tagaaatgta gcacccaaca aaactgaaac cgtgatcgca ggaagtattt gcatgattaa
      421 gttcctcaac tagtgaagcg gcccaacgct acgctttgag cggctagccc acgcaactac
      481 cgataaaggc tactcaccgg cgagtccgct ccaagcgctt gttcggccgc gtcgcgagca
      541 tacgtagtaa ctcgtccgat gcgagcacag tcgcagagcg tggaaagacc ttctcaatca
      601 agcacgcgtg gacagctggg tccaggtccg cgcagcagtc tttcacgata aagagtcggt
      661 agtctgcgtc ggcggcagca agtgtcgtcg agagcactac tccgctggtc gcgatgccga
      721 acagcaccag agtgtcgatg tccttggcgc gcaacagcaa tgcgagatca gtcccagcga
      781 acgcattaat gcgactcttc gttacaacta gatcgccctc atgtggggca accgctgggt
      841 ggattgaacc ggaggagccc gtaaagagtt cttgatgtct gggcgatgcc ttgatcccgc
      901 ccaggagcat gtttcgttgg tgaatctcag gtaggcccgg tcggaaccca accttgacgt
      961 gaacgatcgt caaccccaca tcgcgcccgt gttgaagaag cgtccccgcg cgtgtgacga
     1021 ggtcgccatc cggtgcataa accgagacaa tgcccgactg aaga
//
LOCUS       DATCGC010000392         1845 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_72668, whole genome shotgun sequence.
ACCESSION   DATCGC010000392 DATCGC010000000
VERSION     DATCGC010000392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1845)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1845)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1845
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72668"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..990)
                     /locus_tag="VIJ87_03755"
     CDS             complement(<1..990)
                     /locus_tag="VIJ87_03755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443581.1"
                     /translation="MAIPMQGSWTVSVKAKNADFPQRFIIAGADSGNGTYVGAVATPP
                     VLVTGAHWRIQVQNNPGGGFIDSADQIKFPTISGGQYRFDIESNDAGGDEDFNDLVLT
                     CSTPVTATDFVVYGNARSYSGRCFLPCLRNWLIIDTDLTLRHALTYPAIRKALETIYP
                     DRVRIKPIPRPDPPPFIPMVIPLTDDRLIPDKRVQLLRLPQQQQLNGDVRAAESTESS
                     FALRTAALTKATQISSLAVDRVAIGSIVDKVGLRCFTESLAGFPIQFEEYDRTLAELG
                     GGAYSGLGTRENLGQAVTDRNGNYVFRFTRSIGQFLDEADVDVAAGESEVVQAM"
     gene            complement(1429..1707)
                     /locus_tag="VIJ87_03760"
     CDS             complement(1429..1707)
                     /locus_tag="VIJ87_03760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443582.1"
                     /translation="MAHDFQISRDNQALFITALPQKSISVVTSLVFSSCDARGLFLLS
                     RKLRTIHEITRTNTNKILVAYVFMIDQIHLLTNQPKPLSVLVTKRTHS"
BASE COUNT          444 a          434 c          523 g          444 t
ORIGIN      
        1 cattgcctgc acaacttcgc tctcgccggc tgcgacatct acatcggcct cgtcaagaaa
       61 ctgtccaatc gaccgagtga atctgaagac gtagttgcca ttccgatcgg ttacagcctg
      121 gcccaggttt tcacgagttc cgagacctga atacgcaccg ccaccgagtt ccgctagagt
      181 tcggtcgtat tcttcaaact gaatcgggaa gcccgcgagt gattccgtaa agcaacgcag
      241 tccaacttta tcgacgatag aaccgatggc gacgcggtcg actgcaagac ttgagatttg
      301 tgtcgccttc gtgagagccg ccgtacgcag ggcaaaagaa ctttctgtag actctgcggc
      361 tctcacgtcg ccatttagtt gttgctgttg cgggagacga agcagctgta cacgcttatc
      421 gggaatcaac cgatcatcgg tcaatgggat caccatcgga atgaagggtg gcgggtcggg
      481 acgcggaatc ggcttgatgc gaacgcgatc agggtaaatc gtttcgagtg cttttctgat
      541 tgcgggatag gtgagtgcat gtctgagcgt cagatcagtg tcgatgatca accagttgcg
      601 caaacacggg aggaaacagc ggccgctata cgatctcgcg tttccgtaaa cgacaaagtc
      661 ggttgcggta accggggtcg aacaagtcag gaccaggtcg ttaaagtctt cgtctccacc
      721 agcgtcgttg ctctcgatat cgaaacgata ttgtccaccg gagatagttg gaaacttgat
      781 ttgatctgca gagtcgatga aaccacctcc gggattgttc tggacttgaa tgcgccaatg
      841 cgctccagta acgagaacgg gaggagtcgc gacggcgccc acataggtgc cgttaccgga
      901 gtcagctccg gcgatgatga agcgctgtgg gaagtcagcg ttttttgctt taaccgatac
      961 ggtccatgag ccttgcatcg gaatggccat gagaatacct ccttcaaccg agcgccagat
     1021 ttaattggcg ttcgcagaga aatgccaagt gggtaaagca ggttggacgg cgctgctttg
     1081 aagaccagga gaaacattca tcctgggggt tcgggagttg cgacagggga agagccactt
     1141 tttttgcgag gcttcgactc ttcaatagcc ctgattgagg aaggtgccaa tagtcgcttt
     1201 gggggtggga tgcgactgac tggaccaaca agacatgcgg tgaagactag ccgtcaaatt
     1261 tcatcggtct cgggttgtgg ctatggcaat aggtgtaccg agtcagccct taaagaatat
     1321 tggcgcaaaa tgatcggtga tagatcgaag tgtctacaaa agagatctgg gctgtgaact
     1381 gaagtacgcg ctttaaggca cccggcattt cggcttcgcc gcctgatatt aggaatgggt
     1441 ccttttcgtc acgagcactg aaaggggttt gggctgattg gtcaaaagat gaatctgatc
     1501 gatcataaag acataagcga ccaatatttt gttcgtgttg gttcgtgtga tttcgtggat
     1561 cgtccttagt tttctggaca aaaggaacaa tccacgcgca tcacacgagc tgaacacgag
     1621 actcgttact accgaaatcg acttttgagg taaagctgtg atgaagagag cttgattgtc
     1681 gcgtgagatc tggaaatcgt gagccatgag ttagctcctt tagacgtgag gttgaagaac
     1741 tgggcgctta gactagtact gatttgctga atcgtgcggc ggagccgatg caccgtcgcc
     1801 acttttcctc tcagcgttcc taactcttca ctggcaaccc attcg
//
LOCUS       DATCGC010000393         3589 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_404918, whole genome shotgun sequence.
ACCESSION   DATCGC010000393 DATCGC010000000
VERSION     DATCGC010000393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3589)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3589)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3589
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_404918"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..461)
                     /locus_tag="VIJ87_03765"
     CDS             complement(<1..461)
                     /locus_tag="VIJ87_03765"
                     /inference="COORDINATES: protein motif:HMM:NF016552.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443583.1"
                     /translation="MKRNKTNLLILFVMLTMSFAGRAQTALAQNALAPQNPHNDVKTD
                     SRILYHNGPVLSGAQDIYLIWYGCWANDCGFAGDTASQFILSDFMSSLGSTPYFQINA
                     GYPNSSGQAPSGGLFFGGSAVDRFYSHGLELTAEDIQGIVSDQILAGVLPL"
     gene            complement(535..1902)
                     /locus_tag="VIJ87_03770"
     CDS             complement(535..1902)
                     /locus_tag="VIJ87_03770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443584.1"
                     /translation="MTTTHTTISSRSWAMIRSLLVFFVAVALLTMNLNSGKVAARSSA
                     QQSTIVLQTAGAPFLDGTTQIVGNNPANETNPHVSCNLVSYTYDDFQGLSTIRYHDLE
                     TGSDNLIPGNTVDLFSDISGSRVAWTEVTFPGDTVRIFDTSSQVTTVVPGLGRSNPSI
                     GGNLVAYEARPDPHAGTPPVEITTYDLSTGTVTPLTNNSLSNMHPNVSPNGNAVVWDQ
                     CQTFNVDCAVYAALQSAPGVFTTRALTEPAGNFHLPSTNGEIAVYVSGRSGENDVYYQ
                     ALAGGTEVHLAIPGDQRDATISGDLISFESQDQNGYDTFVYDIRSGKLFQVTKTPGDE
                     FLSEISVCNGVGRIVYSIVGDGAYDVYAVSFQVPSVTEDQIDDLITLIRSFNLPPGTA
                     NSLITKLEHALSARDSGDMATACSLLTDFTNECAAQFGKKVTTDQAAQLINSANQIKS
                     DLGCQ"
     gene            complement(1940..3286)
                     /locus_tag="VIJ87_03775"
     CDS             complement(1940..3286)
                     /locus_tag="VIJ87_03775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443585.1"
                     /translation="MRTIPTIIRNGRLMKRTRMLPVLLIAVALVVPFRSPVAAPATTE
                     TTIVLDTDAAPLIDGTFQVVSNGLTNETDPHVSCNLASYTSDAFQANSRVHYQDLSTG
                     TDNVIPSNEYDLLSGISGSRVAYTEATSSGYAIKVLDTNSQTTTVVPGVRRINPSIGG
                     NLVAFEDTSNLTPEITTYDLSTGIVTPLTNDSLYDRSPKVSPNGNAVVWEKCQLTGDG
                     CDIYAAIQTSPGVFTTRALTTGGGEDRFPSTDGEVAVYVSNRTGENDVYYQPLNGGSE
                     VHLSILGNQRHPTISRHLISFESRYLLSYDIYVYDIRTGQLSKATNTLHDEMLSEIGV
                     CNGVGRIVYVIPEDGTFDIYALSFAAPRVTEDQINDLISLIGSFNLARGTANSLTTKL
                     QNALDAIEASDTATACSSLTGFTNVCSAQSGKKLTNDQATQLINSANQIKSALGCQ"
     gene            complement(3305..>3589)
                     /locus_tag="VIJ87_03780"
     CDS             complement(3305..>3589)
                     /locus_tag="VIJ87_03780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443586.1"
                     /translation="TASGSLPALCGNCSTGDAVMLTPEQASVLAQIPTRAIYRLVETG
                     AIHYREVPAGSLVVCLKTLVAASKPNDDNTPDASAPQCQPVKRLTQESGD"
BASE COUNT          825 a          878 c          997 g          889 t
ORIGIN      
        1 tcgaggggca atacgccggc aagaatttga tcggagacga ttccctggat gtcttctgct
       61 gtcaactcca acccatgcga atagaaccga tcaacagcag aacctccaaa gaacagtcct
      121 ccgctcggcg cttgaccact gctattggga tagccagcgt taatctggaa atatggtgtg
      181 ctacccaggc tcgacatgaa gtcgctcaga ataaattggc tggccgtatc gccggcaaag
      241 ccacaatcat tggcccagca gccataccag atcagataaa tatcctgtgc cccggacagg
      301 actggaccgt tgtggtaaag aatcctgcta tcggttttca cgtcattgtg tggattttgg
      361 ggagcaaggg cgttctgggc caaggccgtt tgcgcacgcc cggcgaagct catagttagc
      421 atcacaaaca gaatgagcaa gttggttttg ttccttttca tttctcttct ccttcgatat
      481 tcaaaatgat tgcagtgacc tcaagtggtc gcagtgttca ctcaagtatc gggttcactg
      541 gcaaccaaga tcggatttga tctggtttgc tgaattgatc agttgcgcgg cctgatcagt
      601 ggttaccttt ttgccaaatt gcgcggcgca ttcgttggtg aagtcggtga gaagagagca
      661 ggccgtcgcc atatcaccgg agtctcttgc actgagtgca tgctctaact tagtgatcag
      721 actgtttgcc gttcccggcg gaaggttgaa gctgcggatt agtgtaatca gatcatcaat
      781 ctgatcttca gttacgcttg gcacctgaaa cgaaacggca tagacgtcgt aggctccgtc
      841 acccacgatc gagtagacaa ttcgaccgac accgttgcac acactgatct cactcagaaa
      901 ctcatcacca ggtgttttgg taacttgaaa cagttttccg ctacgaatgt catagacaaa
      961 ggtgtcgtat ccgttttggt cctgcgactc aaaagaaatg aggtcaccag agatcgtggc
     1021 atcgcgctgg tcaccgggaa tcgcgaggtg tacctcagtg cctcccgcta acgcctgata
     1081 gtagacatcg ttctcaccac ttcgacctga gacgtaaacg gcgatctcac cgtttgtgga
     1141 agggagatga aagttgccag ccggctccgt aagagctctg gtagtgaaaa ctcccggcgc
     1201 agactggagg gcagcataaa cagcgcaatc gacgttgaag gtttggcact gatcccacac
     1261 gacggcgttg ccgtttgggc tgacgttggg gtgcatgtta ctcagcgagt tgttggttag
     1321 tggtgtaact gtgcctgtgc tgagatcata agtagtaatt tcaactggag gcgtgccagc
     1381 gtgagggtca gggcgggctt cgtaagcaac tagatttccg ccaattgaag gattacttcg
     1441 tccgagtcca ggaacgactg ttgtgacttg cgagctcgta tcaaagatcc tgacggtgtc
     1501 tccggggaac gtgacttccg tccacgcgac gcgagaccca gaaatgtctg agaacagatc
     1561 aactgtgtta ccgggaataa ggttgtcact gcccgtttcc aggtcgtggt aacggatggt
     1621 cgagagtccc tgaaaatcat cgtaggtgta cgagacaagg ttgcatgaga catgcgggtt
     1681 cgtttcgttt gccgggttgt tacctacgat ctgagttgtg ccgtctaaaa aaggcgcacc
     1741 agcggtctgt aagacaatcg tcgattgttg tgcagagctt cgagcagcga ccttgccgga
     1801 attcaggttc atggtcagta gtgctacagc gacaaagaaa acgagtagcg aacggatcat
     1861 ggcccagctg cgacttgaaa tagttgtgtg tgtggtagtc atgacgttag tcctttccga
     1921 gatctagatc tctcctcttt cattggcaac caagagcgga tttgatctgg tttgccgaat
     1981 tgatcagttg cgttgcttga tcgttggtta actttttgcc ggattgcgcc gagcaaacgt
     2041 tggtaaagcc ggtaagtgaa gagcaagccg ttgcggtatc agacgcttca atcgcgtcga
     2101 gcgcattctg taacttggtt gtgagactgt tggccgtacc gcgcgcaagg ttgaagctgc
     2161 cgatcagtga aatcagatca ttaatctgat cttcagttac acgcggcgcc gcaaacgaaa
     2221 gagcgtagat gtcaaaggtt ccgtcttccg gaatgacgta gacaattcgg ccgacgccgt
     2281 tgcagacgcc gatctcactc agcatctcgt catgaagtgt gttggtagct ttagacagct
     2341 gcccggtacg aatgtcgtag acataaatgt cgtagctgag caggtaccgc gactcaaaag
     2401 aaatgaggtg gcgcgagatc gtggggtgcc gttgattgcc gagaatggag aggtgaactt
     2461 cggagcctcc attcagcggt tgataataaa catcgttctc gccggttctg tttgagacgt
     2521 aaaccgccac ttcaccgtcg gtggacggga aacgatcctc accgccaccc gtggtcagcg
     2581 ctctggtagt gaacacaccc ggtgaggttt ggatggctgc gtagatgtcg caaccgtcac
     2641 ctgtgagttg gcacttctcc cacacaacgg cattgccgtt cgggctcact ttggggcttc
     2701 tgtcatataa cgagtcgttg gttagcggcg tgacgatccc agtgctgaga tcataggtag
     2761 taatctcagg ggtgaggtta ctggtatctt cgaaagcaac tagatttccg ccaatcgaag
     2821 gattaattcg cctgactcca ggaacgactg tcgtcgtttg tgagttcgta tcgagaacct
     2881 tgattgcgta tccggacgac gtagcttccg tgtacgcgac gcgagacccg gagatgcccg
     2941 acagcagatc atactcatta ctgggaatca cattgtcagt tcctgtcgac aggtcttggt
     3001 aatggactcg cgaattcgcc tgaaatgcat cagacgtgta agaagcaagg ttgcatgaga
     3061 catgtgggtc cgtttcgttt gttaacccat tgcttacaac ctgaaaggtg ccgtctatta
     3121 gaggtgcggc atctgtgtct aagacaatcg tcgtttcagt tgttgcaggt gccgccactg
     3181 gacttcggaa aggcacaact aacgccactg caatcaacaa gacaggtagc atcctcgttc
     3241 gcttcatcag acgaccgttt cgaataatgg ttggtattgt tctcatcgct ttccctctcc
     3301 ttctttaatc tccagactct tgggtgagac gcttaacggg ttgacactgc ggcgccgacg
     3361 cgtcaggcgt gttgtcatca ttaggtttac ttgccgcgac cagcgttttg agacacacga
     3421 cgagcgagcc cgcgggcacc tcgcggtaat gaatcgcacc ggtctcgacc aggcggtaga
     3481 tcgctcgtgt tggtatttgt gccaaaacgg aggcttgttc cggcgtgagc atgacggcgt
     3541 cgccagtcga gcagttgccg caaagcgccg gcagcgagcc gctcgcggt
//
LOCUS       DATCGC010000394         1096 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_271731, whole genome shotgun sequence.
ACCESSION   DATCGC010000394 DATCGC010000000
VERSION     DATCGC010000394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1096)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1096)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1096
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271731"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(350..>1096)
                     /locus_tag="VIJ87_03785"
     CDS             complement(350..>1096)
                     /locus_tag="VIJ87_03785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443587.1"
                     /translation="RRWGGNMERAVQTYMSIALTSLLAIGAFAGFVHTASAQNPEMQQ
                     RVAEIKEASAKNKQALMSYSWNEQVTISLKGEVKKVQHYQVRLGPDGQQQKTSLDPPT
                     EAAPPSGGRMKQKIVAKKKEEYKDYGEDMKALAQQYAPPDPAKIQQAAAAGNITLGTV
                     AGAPGQVQLVIRNYLKPGDSMTLVFDKAQKSIVSVQIASYMDDPKDVMNLTVQYSKLP
                     DGTNHIDSIVVDGVSKQLNVAIKNSNYAHV"
BASE COUNT          232 a          305 c          274 g          285 t
ORIGIN      
        1 ttcgtcgcct atccggccga atatggcagg acaggaatca tgacgttcat catcaaccag
       61 gatggtgtcc tgcttcaaaa ggacctgggt aagaccacaa ccgagacagc atcgacaatg
      121 accgcattcg atcctgatca aagctggaat cttgtagggg attaatagat tccacccgcc
      181 gggtgctctc gtactatgat ccgaaatcac gggtcagtgc cgctggcaaa caaagtctgt
      241 tgtgcgtctt gaatacggtt cgcaggcaaa gcgcaacagc gccatcccca aaacatcagg
      301 gatggcgttg gtaatgcgac gaccgggaac cttcgtcaga atacagaact caaacgtgcg
      361 cgtagttgga attcttgatc gcgacgttta actgcttgct cacgccatca acaacgatac
      421 tgtcaatgtg attggttcca tcgggtagct tgctgtactg caccgtcagg ttcattacat
      481 cctttggatc atccatgtag gaagcaatct gtacactcac aatcgacttc tgagccttgt
      541 caaaaacaag agtcatcgaa tctccgggtt tcagatagtt gcgaatcacc agctgtactt
      601 gacctggtgc gccggcgact gtacccaggg tgatgttgcc cgcagcagcg gcctgctgta
      661 tcttcgcggg atcaggcggc gcatactgct gcgccagggc cttcatgtct tccccgtagt
      721 ccttgtactc ttcctttttc ttcgctacta ttttctgctt cattcgcccg ccgctcgggg
      781 gagccgcttc ggtcggcggg tccagtgagg ttttctgctg ctgaccgtcc ggcccgagcc
      841 gtacctgata gtgctgaact tttttcacct cgcctttgag gctgatcgtg acctgctcat
      901 tccagctgta ggacatgagg gcctgtttgt ttttggcgga tgcttctttg atctctgcaa
      961 ctcgctgctg catttctgga ttctgtgcac tcgcagtgtg aacgaaccct gcaaaagctc
     1021 caatagccag aagggacgta agtgcgatac tcatgtaagt ctgcactgct ctctccatat
     1081 ttcctcccca ccgccg
//
LOCUS       DATCGC010000395         1061 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_271794, whole genome shotgun sequence.
ACCESSION   DATCGC010000395 DATCGC010000000
VERSION     DATCGC010000395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1061)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1061)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1061
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271794"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..653
                     /locus_tag="VIJ87_03790"
     CDS             <1..653
                     /locus_tag="VIJ87_03790"
                     /inference="COORDINATES: protein motif:HMM:NF019351.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HEY5443588.1"
                     /translation="IDLLVQAPSTPGTFNVTFNGGATVLFTVEVKQEAGVSPIPNPMP
                     FPTPLQFPQMPKFLFDLSFADVKVRRDLHFATNPTPYPPPPVPYPIPPRHTIDGKQFS
                     GHIDQTMLLGGTEEWTIYNDNATGAAHPFHIHVNPFQVVEILDPTVSPTPVKLPRPWI
                     WWDNFALPPGGYVKILSKFADFAGKFVLHCHILDHEDRGMMQLVEVTTNITNMTHK"
     gene            765..>1061
                     /locus_tag="VIJ87_03795"
     CDS             765..>1061
                     /locus_tag="VIJ87_03795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443589.1"
                     /translation="MSANEKDWVGWNRNSTSSLIEESLRAGLAVLWRAYIWAEHTGAN
                     VWDCAVGADSLYQTGMTAGDLRWLITKGLAEHRQETSAYEAPRRSFSRSNGYFFN"
BASE COUNT          264 a          284 c          270 g          243 t
ORIGIN      
        1 ggattgactt actggtgcaa gcgccgagca ctccaggtac cttcaatgtc actttcaacg
       61 gtggagcgac ggtgctcttt actgtggagg ttaaacaaga agctggcgtt agcccaattc
      121 ccaatccaat gccgtttccg actccgctgc agtttccaca gatgccgaaa ttcctgttcg
      181 acctcagttt cgcggacgtt aaggtcaggc gcgatctaca ctttgccacc aacccaactc
      241 cctacccacc gccaccggtg ccatatccta tccctccgag gcatacgatc gatggcaaac
      301 agtttagcgg tcacatcgat caaaccatgc tcctcggggg aaccgaagag tggacaatct
      361 ataacgacaa cgccactggg gcggcgcatc ctttccacat ccatgtcaat ccgtttcagg
      421 tggttgaaat acttgatccg acggtgagcc caactccggt taagctgcca aggccctgga
      481 tatggtggga taatttcgcg ctgccaccag gaggctacgt gaagatactg agcaagttcg
      541 cggattttgc gggcaaattc gttcttcatt gccacatcct ggatcacgaa gaccgcggaa
      601 tgatgcaact ggtggaggta actaccaaca tcactaacat gacgcacaaa taggaaatta
      661 actcttacta aaaaacctta aatcaagcga tccaataagc gacaactctg tccatttgag
      721 gagaacgcgt tttttgatcg tcaagagcgc aggggttagg ggtcatgtca gccaacgaaa
      781 aagactgggt cggttggaac cggaactcaa catcctcttt gatcgaggaa agtttgcgcg
      841 ccgggcttgc tgttctttgg cgtgcctata tctgggccga gcacacgggt gcgaacgtgt
      901 gggactgcgc tgttggagca gacagcctgt atcaaacagg aatgactgct ggcgatctgc
      961 gctggttgat aaccaaggga cttgctgagc atcgccagga aacttctgcg tacgaagccc
     1021 ctcgtcgttc gttcagccga agcaatggtt acttcttcaa c
//
LOCUS       DATCGC010000396         3744 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_8175, whole genome shotgun sequence.
ACCESSION   DATCGC010000396 DATCGC010000000
VERSION     DATCGC010000396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3744)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3744
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8175"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            348..1217
                     /locus_tag="VIJ87_03800"
     CDS             348..1217
                     /locus_tag="VIJ87_03800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443590.1"
                     /translation="MKNLKRIVSVVVLFAFSVVGVCAQRQPQSYRINDRKVSVILQRL
                     ERSSSQFRNSLNSALLQSSIDQTRSENDINTFEPGFETAIHQFRSQFGRHLEGVADIE
                     SVLGQASLINGFMARNRLNTKVHSDWAGVRTDLNGLAHFYGVTWNWSRQVPAPTNSSG
                     SLQLSDGDINKLIQRLETGGDTFRTSLTEAFGETGYAQAIPERAMNNDLRSLKRETNQ
                     LRIQFDNKQQISSNVELVIARAAPIDTYLRKNLLTRQVQNDWSCLRADINKLAGAFNL
                     SPNWENARIRSMQ"
     gene            1347..1916
                     /locus_tag="VIJ87_03805"
     CDS             1347..1916
                     /locus_tag="VIJ87_03805"
                     /inference="COORDINATES: protein motif:HMM:NF016836.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HEY5443591.1"
                     /translation="MDSNEEVIKKRVVVDRTGQRSEVVSERSQKVASPPGVSASTVTI
                     IIVLVLIIAAAVVYISIQSANRSEDLVAATQAPPTIVPQPAPAPAPVIIQQAAPLQPA
                     PVIIQQPATAPVEKELTSANEDANMQDLAAKKLNEDLELGGVVTTVNDARAVLTGNVG
                     SEAAKAKAEQLVKGVRGMKSVDNKIVVSG"
     gene            1963..2343
                     /locus_tag="VIJ87_03810"
     CDS             1963..2343
                     /locus_tag="VIJ87_03810"
                     /inference="COORDINATES: protein motif:HMM:NF025887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEY5443592.1"
                     /translation="MNSLDQELIDLDRGWVAAYLQGNAELFNRIWTERFVFTFPFGQF
                     NNKEREISNIESGSVAFESISSDSLTVRVYGHTAVMAGHFSVKGQYEGRDISGRYSYT
                     NVIGKQHDELWQIVASHANLLSSS"
     gene            complement(2399..2731)
                     /locus_tag="VIJ87_03815"
     CDS             complement(2399..2731)
                     /locus_tag="VIJ87_03815"
                     /inference="COORDINATES: protein motif:HMM:NF016141.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HEY5443593.1"
                     /translation="MLAISLNSLGLLISNRQQNSAITFVVWIVIGLVVGYVGSQILNR
                     RDRHVVRYVLLSIVGAIVGGFLANLMGKPGIRGLDLYSMLVALVGAVVFLIVYHALFR
                     RRRFLKMS"
     gene            2978..3367
                     /locus_tag="VIJ87_03820"
     CDS             2978..3367
                     /locus_tag="VIJ87_03820"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5443594.1"
                     /translation="MTFDPQLRVLYVDNDMDCCDMLGTLLEFSKIETQFANSAAQALS
                     AIQAQRFDMYLLESWLPGINGFELCSRMREADPDTPILFFSSAAYEADKLRGLEAGAN
                     DYVSKPEIDTLLGSIAKYLPQAKCAAA"
BASE COUNT         1021 a          919 c          924 g          880 t
ORIGIN      
        1 tcaaagccga gagcgatcaa tatctcaatt gagacataca aggaatgggt ctcatcaaaa
       61 tgttgaagct tcctgttcga tagctgtctt cccgatatgt gtggtagcgc accgaccctt
      121 cctcagtcga gtgttataag tttatcgtta gtttccttta gagattatct ctcgccttcc
      181 ggatcgggcc agcaaccttc ttcttgagtc gtctgtaatt ttccagaggg gctgaagaag
      241 agttgtgatt ccacgtccac agccctccaa ctacaaccca gcattcagtt agtggtccag
      301 catcgcgcga cgtgtgtgcg gcaaaccttg gtaactgaaa gaatcatatg aagaatttga
      361 aacggatcgt ctctgtggta gtcctgttcg ccttttcagt agttggtgta tgtgcgcaaa
      421 ggcaaccaca gtcctaccga atcaatgacc gcaaagtcag tgtcatcctg caacgacttg
      481 aacgaagttc cagccagttc cgcaatagtc tcaattcggc tttactgcaa tccagcattg
      541 accaaactcg atcagaaaac gacatcaaca cattcgagcc aggctttgaa actgccattc
      601 atcaattccg aagccagttt ggtcgtcatc tggaaggtgt tgccgacatc gaatcggttc
      661 taggacaagc gtcgttgatc aatgggttca tggcgcgcaa tcgcctgaac acgaaagtac
      721 acagcgattg ggcgggagtt agaacagatc tcaacgggtt ggcgcatttt tatggcgtga
      781 cttggaattg gagtcgacaa gtacccgcgc caaccaactc gagtggatca ttgcaactgt
      841 cggatggcga tatcaataaa ctcattcaac gacttgaaac tggcggcgac acatttcgga
      901 caagcctcac ggaagcattt ggcgagactg gctacgctca ggcgatacca gaacgggcga
      961 tgaataatga tcttcgaagt ctgaagcgcg agactaacca gctacgtatt cagtttgata
     1021 acaagcaaca gatctcgagt aacgtcgaat tggtaattgc tcgagcggcg ccgattgata
     1081 cgtacttacg taagaatctg ctcactaggc aagttcagaa tgattggtcc tgtttacgag
     1141 ccgatataaa caagttggcc ggtgcattca acctttcccc gaattgggag aacgccagga
     1201 tccgttcgat gcaatagtaa accattgcct cgtctggatc gggatctcgg atacaggcag
     1261 ctgggatgga tagatggacc gaagaatgat tgaagctcgg cgattccagc cgcgctcaac
     1321 cagtcgcaaa gaaagggata aatcaaatgg attcaaatga agaagtaata aaaaagcgag
     1381 tcgttgtaga tagaacgggc cagcgtagcg aagtcgtaag tgaaaggtca cagaaagttg
     1441 caagtccacc gggtgtttcg gcgagtacgg taacaataat tattgtgctc gtgcttatca
     1501 ttgctgctgc cgttgtttac atcagtattc aaagtgcgaa cagaagcgaa gacttggttg
     1561 ccgccactca agcgccgcca accattgttc cacagccggc gcccgcgcca gctcccgtga
     1621 tcattcaaca ggcggcccct ctgcagccgg caccggtaat tattcagcaa cctgccacgg
     1681 ccccggttga aaaagaactc acgagtgcga atgaggacgc aaacatgcaa gacctcgccg
     1741 caaagaagct gaacgaggat ctggagcttg gtggcgtagt cacaactgtt aacgacgcgc
     1801 gagctgtcct gactggcaat gtcggttccg aggccgcaaa ggcaaaagct gagcagttag
     1861 ttaagggtgt ccgaggcatg aaatcagtcg ataacaagat tgtcgtgtct ggctgagaac
     1921 agcgatggca cccgaggtaa ggcaatggaa cgagaccgac ttgtgaatag cctagatcaa
     1981 gaactaatag atctggatcg cggttgggtg gcggcatacc tgcaagggaa tgctgagctg
     2041 ttcaaccgta tctggactga acgtttcgtc tttacttttc cttttggcca gttcaataac
     2101 aaagagcggg agatctcaaa catcgagtca ggaagtgtag cgtttgagtc tatctcgagt
     2161 gacagcctca cggtcagagt ctatggacat acagctgtta tggctggcca ctttagtgtg
     2221 aaaggtcaat acgaaggtcg agatatcagt ggtcgatata gctatacaaa tgtgatcgga
     2281 aagcagcatg acgagttgtg gcaaatcgtc gcctcacacg cgaatctgct tagcagttct
     2341 taattcccac caacaaccct tcgtccccag cacattcgag ctttcctgag tcgcgaggtt
     2401 aactcatctt aaggaatcgt cggcggcgaa atagtgcgtg atacacaatc agaaacacta
     2461 cggcgccaac gagtgctacg agcatgctat agaggtccaa acctcgaata cctggtttgc
     2521 ccatcaggtt ggctaagaaa cctcctacaa tggcacccac gatacttagg agaacatacc
     2581 tgaccacgtg tcggtctctc cggttgagta tctggctacc cacataaccc accaccaagc
     2641 caattacgat ccatacaaca aaggtgatgg cagaattctg ctgccgattg gatatgagta
     2701 gaccgagcga gtttaagctg atggctaaca ttgcattttc cttctctaaa aagcacgaac
     2761 aatacagcag aaggtctgtg gcctcctttt aggctgtcaa tagttaggtg accagaagaa
     2821 agtttacgac cctaacgatt ctcagtctgt gcggcagacc acagagaggg tcaacagaca
     2881 atttgtgttt tatatgtgtg ccagcacaca tacgcttgcc taaaacaccg ttactcttat
     2941 gcaaacacgg aaagactatt cgctcgccag gaggacaatg accttcgacc cccaattgcg
     3001 ggttttatac gtagacaacg acatggattg ttgtgacatg ctaggtactc ttctggaatt
     3061 ctcgaaaatt gaaactcaat ttgccaacag cgcagctcaa gccctgtcgg ccatacaagc
     3121 gcaacgcttc gacatgtatt tgctcgaatc ctggttgccc ggcatcaacg ggtttgaatt
     3181 gtgtagtcga atgcgcgaag ccgatccaga cactccgatt cttttctttt ccagcgctgc
     3241 ctatgaagca gacaaactga gaggccttga agcaggggcc aacgattacg tgagcaaacc
     3301 cgagatcgat actctccttg gaagtatcgc gaagtacctt ccacaggcaa aatgcgccgc
     3361 cgcatagccg cgtgtctgtc gccaactacc aatcaaagtt cgcctatcta tatgtgtgtt
     3421 acggcacata caaaggccgc tcaatagtct ttaatggtct ttgtcccggc atctattctg
     3481 aagcgtacat cagtccggct cgtagtcgaa cccaattgac tgagcactga tcccctccaa
     3541 ttacttcgac gtagaacaag cagaagcgcc ggcttcggcg agatcaaaga cccgctcttc
     3601 gcaacgctat agatttacac ggggccacca tccaatggga gttaagatat gaagataaat
     3661 cagtcaaaaa gcaaagttgg gcgcgccatc atggcgtttt cacttctgct tggaattgga
     3721 agcgttttgg gttcggcagc tcaa
//
LOCUS       DATCGC010000397         1195 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_172284, whole genome shotgun sequence.
ACCESSION   DATCGC010000397 DATCGC010000000
VERSION     DATCGC010000397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1195
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_172284"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1195)
                     /locus_tag="VIJ87_03825"
     CDS             complement(<1..>1195)
                     /locus_tag="VIJ87_03825"
                     /inference="COORDINATES: protein motif:HMM:NF012485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="secretin N-terminal domain-containing protein"
                     /protein_id="HEY5443595.1"
                     /translation="RVVSYQGDLKSFIRLYAEQLSLNVIFDRQSFAQSRPLDINLREV
                     TTAQALDYVFLQEGLFFQKLSRRTILVADQSRRPQYQQLVLRTFFLSNMKPTDARTLV
                     QQAIPPSVGRPQTIVVPDDATNSLTVRDTAENVRLIGDLLQSIDKDRAEVVMDVNIYE
                     VSKSDFLQFGNQIGTGDFNLGGSPGFSLLGFGGVPSGSFPGVNLGSVLGGVPTALAAA
                     LVVPPMALHALESKDNTRLVASTQVHAFNGEESSARIGQRVPVQTAQAYPFGVQTGQP
                     ATGTNFPTGGFPVINYEPTGLTLKFTPQVFPNLDVQVKMNIEEKDVLGASSLTPTFTE
                     RTMTGTARVQNNRTMMLASVTTNIDTTGRRGIAVVGGLPLIGRLFSAPTRDRRQVDIV
                     IAVTPR"
BASE COUNT          306 a          305 c          311 g          273 t
ORIGIN      
        1 cgcggcgtaa ccgcaatcac aatgtccacc tgccttcgat cacgagtagg tgcgctgaat
       61 agccggccaa tcaaaggtaa cccaccaacc accgcaatgc ctcgacgccc agttgtgtca
      121 atattggtcg tgacactggc gagcatcata gtgcgattgt tttggactcg ggcagtgccg
      181 gtcatagtgc gttcggtgaa agttggcgta agcgaactag cgcctaatac gtccttctct
      241 tcaatattca ttttcacctg gacatccagg ttcgggaaca cttgaggagt aaatttcaga
      301 gttagacctg taggttcgta gttaatcacc gggaacccac cggtgggaaa gttagtacct
      361 gttgctggtt gacccgtctg aacaccgaag gggtacgctt gtgcagtttg cacgggaacg
      421 cgctgtccga tgcgagcgct tgattcctca ccattgaagg cgtgtacctg agtggaagca
      481 accagcctgg tattgtcctt cgattccaat gcgtgaagcg ccattggtgg aacaaccaac
      541 gcagctgcca gcgcggtagg aacaccacca agcaccgaac ccaaattcac acccggaaac
      601 gaaccactgg gaacaccacc aaagccaagc agcgagaagc ccggtgaacc gcccaggttg
      661 aaatcacctg tacctatttg attgccgaat tggaggaagt cactttttga gacctcgtag
      721 atattgacgt ccatcaccac ttcagcgcga tccttgtcga tactctgtag caagtcgcca
      781 atcaggcgta cgttttcagc agtatcgcga acagtcaaac tgttagtcgc atcatctgga
      841 acaacgatgg tctgtggacg gccgactgac ggtggaattg cctgctgcac cagcgtgcga
      901 gcatcggtcg gcttcatgtt cgacaagaag aaggttcgca aaactaattg ttggtattgt
      961 gggcgacggc tttgatcggc tacgagaatt gttcgacggc ttagcttctg aaagaaaaga
     1021 ccttcctgaa gaaacacgta atcaagtgcc tgggcagtcg ttacttcgcg gagattgatg
     1081 tcgagaggtc gcgactgagc gaacgactgt cgatcaaaaa ttacattgag acttagctgt
     1141 tctgcatata gacgaatgaa tgacttgaga tcaccctgat agctaaccac tcgca
//
LOCUS       DATCGC010000398         1555 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_471551, whole genome shotgun sequence.
ACCESSION   DATCGC010000398 DATCGC010000000
VERSION     DATCGC010000398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1555)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1555)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1555
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_471551"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1547)
                     /locus_tag="VIJ87_03830"
     CDS             complement(<1..1547)
                     /locus_tag="VIJ87_03830"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5443596.1"
                     /translation="MLNKAPTGRYQTVKELLKDLEDVKQELAFSNRLGHSKPEELGEA
                     GTDGRRTSNVDIPAPHAARSTHEKPIRRTANRSEQIVLQIKRYQLGIALGLVALLVLI
                     VALKYSNFRSVTSEQITSIAVLPFVNASGDQSLDYVSDGLTETLIDQFSQLPQLRVIN
                     RSSSFKFKSQDTDPQEVARSLGVDALVMGRLVQQGDQLQLRVELVNGRDKTQMWGKQY
                     TAKASELQTLQADISTNISDKLRPNLSSEEHKRVSTDKQADDEAYDLYLKGRYSWNKF
                     SEDGLRKSIDYYNRALEKNPRYALAYAGLANSYLILGANNLSPQETYPKAKDSATKAL
                     ELDDTLADAHYAMAATNYYYDWNLSQAENEIRRTLELNPNYANAYNLRGSVQLARGQP
                     NEAVSQIKRGLELDPFSLLLNNKLSTAYYYARDYERSAEQIKKTMVLEPQAAFLHSDL
                     AMNYAQMGKFEEALAAAQKAIILQNDDPVALSTLGMIYGLWGKKTEADWILNTLNQLA
                     KKRYVQP"
BASE COUNT          331 a          387 c          396 g          441 t
ORIGIN      
        1 aacggctgaa cgtacctttt cttggccaat tgattcagcg tatttagaat ccaatcggct
       61 tcagttttct taccccacaa accgtagatc atgccgagag tcgaaagtgc cacgggatcg
      121 tcattctgca aaattatggc cttctgtgcg gcagcaagtg cctcttcgaa cttacccatt
      181 tgggcataat tcatagccaa gtcgctatgt aagaaagctg cttgtggttc gaggaccatg
      241 gtcttcttaa tttgctctgc cgatcgttcg taatctcgtg cgtagtagta ggcggtagat
      301 aatttattgt ttaggagcag ggaaaacggg tcaagctcga ggccccgttt gatctgcgaa
      361 acagcttcgt tgggttggcc gcgagctaac tgaacacttc cgcgcaagtt gtaggcattt
      421 gcgtaattcg gattgagctc cagcgtgcgg cggatctcgt tctcggcttg agacagattc
      481 caatcataat agtaattcgt agccgccatc gcatagtgag cgtccgcgag agtatcatcc
      541 agttccagcg cttttgtcgc agagtctttg gctttgggat aggtttcttg cggtgaaagg
      601 ttgttggctc cgagaatcag gtacgaattc gccaacccgg cgtaggccag cgcgtatctc
      661 gggttttttt caagtgctct attgtagtaa tcaatgctct tcctgagtcc gtcttcagaa
      721 aacttattcc agctgtatcg gcctttcagg tagagatcgt aagcctcatc atcagcctgc
      781 ttatccgtcg acactcgctt gtgttcttca ctgctgaggt ttggacgtaa cttgtcggat
      841 atgttcgtcg agatatcggc ctgaagcgtc tgaagctctg acgccttggc ggtgtattgc
      901 tttccccaca tttgcgtctt gtctcggccg ttaaccagtt cgactctgag ctgcaactgg
      961 tcaccctgtt gaaccagtct ccccataacc agggcgtcga cccctaacga gcgagccact
     1021 tcctgcggat ctgtgtcctg acttttgaat ttgaagctcg aactgcggtt aataactcgc
     1081 aactgcggca gttgtgaaaa ttgatcgatc agggtctcgg tcagcccgtc tgacacgtaa
     1141 tcaaggctct gatctccgct tgcattgacg aaagggagta ctgcgatcga cgtaatttgc
     1201 tctgaagtta cagaacgaaa attggagtat ttcaacgcga ctattagcac gagaagagca
     1261 accaacccca atgcgatgcc aagctgatat cgtttgattt gaagaacgat ttgttcgctg
     1321 cgatttgcgg tacgtctgat tggcttttcg tgcgtcgaac gcgcggcgtg tggcgccgga
     1381 atatctacgt tacttgtccg acgaccgtcg gtaccggctt cgcctaattc ctccggcttt
     1441 gagtgaccta gcctatttga gaatgcgagc tcctgcttta cgtcctcaag atccttcaag
     1501 agctccttga ctgtctggta gcgaccggtc ggagctttgt tgagcattct gccga
//
LOCUS       DATCGC010000399         1034 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_371774, whole genome shotgun sequence.
ACCESSION   DATCGC010000399 DATCGC010000000
VERSION     DATCGC010000399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1034)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1034)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1034
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_371774"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..340)
                     /locus_tag="VIJ87_03835"
     CDS             complement(<1..340)
                     /locus_tag="VIJ87_03835"
                     /inference="COORDINATES: protein motif:HMM:NF013731.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HEY5443597.1"
                     /translation="MTTEHDISTSGRRKLRLLQVDKQTLALRDEEVLTVVEWTEPTPL
                     PFAPASVLGVVSVQGRMFTVLDLGLLMDNEATEQEQRFIVALRGDEQLALAVAESKSV
                     ETRTEEITLDS"
     gene            538..915
                     /locus_tag="VIJ87_03840"
     CDS             538..915
                     /locus_tag="VIJ87_03840"
                     /inference="COORDINATES: protein motif:HMM:NF014664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HEY5443598.1"
                     /translation="MDEFDRYRAEMNEKLTGSDHLGIKRFFALDTQAYEDGALDKRTK
                     ELMGLVASTVLRCDDCITYHIKQCVGLGITRPEFLDAFNVALVVGGSITIPHLRRAID
                     RVDQLVTGKNVDTSNDHDQHSRN"
BASE COUNT          258 a          262 c          258 g          256 t
ORIGIN      
        1 ctgaatccag tgtgatttcc tccgttcgag tctccacgct ctttgactca gcgacagcga
       61 gcgcgagttg ctcgtctcca cgcagagcaa cgatgaaacg ctgttcttgt tcggttgctt
      121 cgttatccat gagcagtcca agatcgagaa ccgtgaacat tcgaccttga acactgacga
      181 cgccaagcac cgaagccgga gcaaatggca acggagtagg ttcagtccat tcgacaacag
      241 ttaagacttc ctcgtcacgc aacgcgagcg tttgcttatc gacctgcaac agtcgaagtt
      301 ttctacgccc gctggttgaa atgtcatgtt cggttgtcac gatgggtgaa ggttacagcc
      361 tcaggcagtt aacagacaaa taaccgcgcg aagagagctt tgtactttgt tttttgtttt
      421 tggtaggcgt cccaaactcg cttcaactaa accattggca gtggacattg caagtgcaaa
      481 gtacaaagta caaagctcta agttacaatc aaacaacaca tcgattcgga ggcgcctatg
      541 gatgagtttg accgttatcg tgcggagatg aacgaaaagc taactggcag cgaccatctc
      601 ggcatcaagc gtttctttgc gctcgacacg caagcttatg aagacggggc gctcgacaaa
      661 agaaccaagg aactaatggg actcgttgca tcaaccgtgc tgcgctgcga cgactgtatt
      721 acctatcaca tcaaacaatg cgtcggactt ggcatcaccc gtcccgagtt ccttgatgct
      781 tttaatgttg cgttagtggt cgggggctcg atcactatcc cacacctgcg tcgcgctatc
      841 gatcgagtgg atcagttggt aactggaaag aatgttgata catccaacga tcatgatcag
      901 cattcaagaa attgataccc tttagtggcg ctcttatctt caagcggacg ctcttctggg
      961 accgcaggcg tcctcgcctg ctgttgttat gtctcaggtt actcagtggt aactaaggca
     1021 ggcgaggacg cctg
//
LOCUS       DATCGC010000400         1078 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_271827, whole genome shotgun sequence.
ACCESSION   DATCGC010000400 DATCGC010000000
VERSION     DATCGC010000400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1078)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1078
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271827"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1078
                     /locus_tag="VIJ87_03845"
     CDS             <1..>1078
                     /locus_tag="VIJ87_03845"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5443599.1"
                     /translation="RSFIQLLDTNPGFDASNTLKMEVALPTLAPSRYANESEQVAFFN
                     QLIERVSTVPGVEATAGVVSLPLSGAWESTDVILEGRAQEGASTRPTADYNTITPDYF
                     KVLRIPVLKGRQFTAQDVKDGPRVVIVNDVLAQRLWPNEEVIGKRLRIGFEKDPREIV
                     GVVSSNKQSDMISELRPTMYVPHAQFPMGGLTLLVRTKGDPLALAPVIREHVRLQDRN
                     IPVSRIGTMEQVLSASVAQQRFTMLLMGLFAGLALGLALVGIYAVMSYLVTQRSHEIG
                     IRLALGAGMNDVLQLILKTGLSLTLAGIAIGLGVAWGLTRFMSTLLFGVTATDALTFA
                     GVPLLLTVVAFIACYVPARRATKVD"
BASE COUNT          251 a          266 c          306 g          255 t
ORIGIN      
        1 agaagtttca ttcaactgct cgatacgaat ccgggatttg atgcttcgaa tactctcaaa
       61 atggaagtag cgctacccac gcttgcccct tcacgttatg cgaacgaatc ggaacaagtc
      121 gcattcttca accagttgat cgagcgggtc agcactgtgc ccggtgttga agccacggct
      181 ggcgttgtga gtttgccact ttcaggtgca tgggaaagca ccgatgtaat tcttgaagga
      241 cgggcacaag aaggagcgag tacaaggccc acggcagatt acaacacgat cactcccgac
      301 tacttcaagg tactaagaat cccggtgctg aaaggtagac agttcaccgc acaagatgtc
      361 aaagacggtc ctcgagtagt gattgtcaat gatgtgctgg cgcaacgctt gtggcccaac
      421 gaagaggtga ttggaaagcg actgcgcatc ggcttcgaaa aagatccgcg cgaaattgtc
      481 ggagttgtga gcagcaacaa gcagtcagac atgatctctg aactgcgacc cacgatgtat
      541 gtgccgcacg cgcaatttcc gatgggagga ttgacgctat tagtccgcac taagggcgac
      601 cctctcgctc ttgcgcccgt aatcagagag cacgtacgcc tccaggatcg aaacattccg
      661 gtttcgcgaa tagggacgat ggagcaagtg ttgtctgcct ctgttgctca gcagcggttc
      721 acgatgttgt tgatgggatt gtttgcaggt ctggcgttag ggctggcact tgtcggcatt
      781 tacgcagtga tgtcgtacct ggtgacccaa cgatcgcatg agataggaat tcggctcgcg
      841 ctcggtgcag gcatgaacga tgttcttcaa ctgatactga aaaccggcct gagcttgacg
      901 ctcgctggta tcgcgattgg attgggagtg gcctggggac taacgcgttt catgtcgact
      961 ttgctcttcg gcgttaccgc aactgatgca ctgaccttcg caggcgttcc gttgctgttg
     1021 actgtagtcg cttttatcgc atgttacgtg cccgcgcgaa gagcgacaaa ggtagatc
//
LOCUS       DATCGC010000401         1090 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_138887, whole genome shotgun sequence.
ACCESSION   DATCGC010000401 DATCGC010000000
VERSION     DATCGC010000401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1090)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1090)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1090
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_138887"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            148..957
                     /locus_tag="VIJ87_03850"
     CDS             148..957
                     /locus_tag="VIJ87_03850"
                     /inference="COORDINATES: protein motif:HMM:NF014582.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046873 - metal ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HEY5443600.1"
                     /translation="METLFSDFKFSGLIIFGLLAAGANVVGGLVLVKSGAHRLGERFL
                     KYLVALGAGFMLAAIFIEILPETIGIWTQSSHGESAARAVVGAMTLLLGGYLSIQLFE
                     HTLAPHFHFGAETHPESFMRPSAAYTAVGGLWIHTFFDGVSIASAFLVNFRVGILVFI
                     AILLHKMPEGFTVASIMLASGRSTQKALIATGAIGAATLAGVIGVALLDARMNNAIGY
                     ALPFSAGVTLYVAASDLIPEVNHKEERNPTVSIVVFVGVALFYLLHKLIEG"
BASE COUNT          220 a          300 c          271 g          299 t
ORIGIN      
        1 ccatggttga gccacctcca ccaactttct gattgtttcg tgatgttcgt ttaccacgag
       61 gaaattagtc tggtagttgg ttcctcaatc cttgttgtat atttcccgcc gcacatgacc
      121 ttactaattg gaacgagtgg cagctgaatg gagacgctct tcagcgattt caaattctcc
      181 ggactaatca tattcgggtt gctggcggct ggcgcgaacg tcgttggggg acttgtcctg
      241 gtaaagtcag gcgctcaccg gcttggcgaa cgttttctta aataccttgt cgcactcggc
      301 gcgggcttca tgcttgcagc catctttatc gagattcttc ctgaaacaat cggcatctgg
      361 actcagtcgt cgcacggcga atcagctgcg cgggccgttg taggcgcaat gacgctttta
      421 ctgggcggtt atctctcgat tcaattgttc gaacacacac tggcgccgca ctttcacttt
      481 ggtgctgaaa ctcatcctga atcgttcatg agaccgtctg ccgcttacac ggcagtcggt
      541 ggcctgtgga ttcatacctt ttttgacggc gtctcaatcg cgtcagcgtt tctggtcaac
      601 ttccgagtcg gcattctcgt ctttatcgca atactcctgc acaaaatgcc cgaaggcttt
      661 accgttgctt ccatcatgct ggcgtccggc cgctcaactc aaaaggcttt aatcgcaact
      721 ggagctatcg gagcggcaac actcgccggc gtcattggag ttgcgcttct cgacgcgagg
      781 atgaacaatg caattggata tgcacttccc ttttctgccg gcgtcaccct ctatgtcgcc
      841 gccagcgacc taatccccga ggtcaatcac aaagaagaac gaaaccccac ggtctcaatt
      901 gtcgtttttg taggagtcgc ccttttctac ctgctgcaca agttgattga agggtaggcg
      961 acctgtggag tttgaaagtc tagttgagta acgacagacc atatttgaag tctttcgctc
     1021 gtcttgccgc cgggttctta ctcgcattgg cgctgttcag tctgagcgcg aacgcccaga
     1081 cgacaccgca
//
LOCUS       DATCGC010000402         1736 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_205388, whole genome shotgun sequence.
ACCESSION   DATCGC010000402 DATCGC010000000
VERSION     DATCGC010000402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1736)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1736)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1736
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_205388"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..591
                     /locus_tag="VIJ87_03855"
     CDS             <1..591
                     /locus_tag="VIJ87_03855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443601.1"
                     /translation="VLVMLSSGNLSVTQSVVNLLEQWTNESQDNLWNAPSMYQATCLV
                     GEALREVQKRDGPYLMPHNIDTTAGFILGGQIAGQKHQLFNIYAQGNFIEATQDTPFF
                     QNGELKYGKPILDRIITSSTSMAEAAKCVLVSFDSTMRSNISIGLPIDLLCYERDSLK
                     VGMHRRFGVNDPYFDIICRQWDVGLKRLFSELPDPT"
     gene            604..1506
                     /locus_tag="VIJ87_03860"
     CDS             604..1506
                     /locus_tag="VIJ87_03860"
                     /inference="COORDINATES: protein motif:HMM:NF013961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HEY5443602.1"
                     /translation="MGNSVALTHTTRYRFDRPVLLSPHEIRLRPAPYCRTPILSYALT
                     VVPAGHVLTWQQDPHNNYLARVVFSEKATELAVVVKLVADMTVINPFGFLVDPYAETF
                     PFAYPSQLTKELRSFLEVESPGQRLTSWLSTFKADHCQVPKPTIDFLVTLNRRIENDV
                     EYLVRLEPGIQTCEQTLQKRSGSCRDSAWLEVQILRHLGLAARFASGYLIQLVPDVEP
                     VEQPAEPARDHASLHAWAEVYVPGGGWIGLDPTSGLFAGEGHLQLASTAFPSLAAPVT
                     GSTEPCEVKLDFALEVMRMPNRLS"
BASE COUNT          401 a          466 c          442 g          427 t
ORIGIN      
        1 gtccttgtca tgttgagttc tggtaattta tctgtgactc agtccgtggt gaatctattg
       61 gagcaatgga ccaatgaaag ccaagacaat ttgtggaacg ccccgtccat gtaccaggca
      121 acttgtctgg taggcgaggc cttacgtgag gtgcagaaac gggacgggcc gtatctaatg
      181 ccccacaaca tcgatactac tgctggcttt atcctgggag ggcagattgc tggacagaag
      241 catcagttgt tcaacattta cgcacagggt aatttcattg aagccacaca ggacacaccg
      301 ttctttcaaa acggagaact caagtacggc aagcccattc tcgatcggat cattacgagt
      361 tcaaccagca tggctgaggc cgcaaaatgt gtccttgtct catttgattc aactatgcgc
      421 agcaacatct ccatcggctt gccgattgat ttgctatgtt atgaacggga cagcctcaag
      481 gtgggaatgc accggcgctt tggggtcaac gacccctatt ttgacatcat ctgtcggcag
      541 tgggacgtag gtttaaagcg cctattcagc gaattgccgg atccaaccta ggaatgttga
      601 gttatgggta atagcgtcgc gctgactcat acaacgcgtt accgatttga ccggcccgtc
      661 ctcctgtctc ctcatgaaat cagactccgt ccggctccct actgccggac gccgattctc
      721 agctatgcct tgacagttgt gccagctgga cacgtcctca cctggcagca ggatccgcac
      781 aacaactatc tggctcgtgt agtattttct gaaaaggcga ctgaattagc ggtggtggtg
      841 aagttggttg ccgacatgac ggtcatcaat cctttcgggt ttctagtcga cccttatgca
      901 gaaactttcc ccttcgccta cccctcccag cttacaaaag aactcagatc ttttctggaa
      961 gtcgagtcac cgggacaacg ccttacgtct tggctgtcca ccttcaaggc tgatcattgt
     1021 caggtaccaa agccaacgat cgatttcctc gtgacactca accgacgaat agaaaatgac
     1081 gttgaatatc ttgttcggct cgaacccgga atccagacct gtgaacaaac gttgcaaaag
     1141 cgcagcggct catgccggga tagtgcctgg ctcgaagtac agattctgcg gcacttggga
     1201 ctggctgccc ggtttgcatc cgggtatctg atccagctgg tacctgatgt cgagcccgtt
     1261 gaacagcctg ccgagccggc tcgggatcac gcgagcctac atgcgtgggc ggaggtgtac
     1321 gttcctggtg gcggttggat cgggcttgat cccacttctg gactcttcgc cggtgaaggg
     1381 catctccagt tggcctccac ggctttccca tcattagcag cgccagtaac tggatcgacc
     1441 gaaccctgtg aagtgaaact tgatttcgct ctggaggtaa tgcgtatgcc aaaccgatta
     1501 tcgtaaccaa cttattgcta ggcagagttt acaaagaatt gcatcccgtt acgtttctca
     1561 tttcgtctcc ccattccgca atcacacgga aataaccttt gcacattgcc gatgaaaggc
     1621 gagccggtta cctacgtgca acgtcagctc ggccacgcca gtattcaacc cacagtggac
     1681 acgtacggca agtggttgtc gatgggcaat aaggcggccg ttgatcggct cgatga
//
LOCUS       DATCGC010000403         1269 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_306206, whole genome shotgun sequence.
ACCESSION   DATCGC010000403 DATCGC010000000
VERSION     DATCGC010000403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1269)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1269)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1269
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_306206"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            561..>1269
                     /locus_tag="VIJ87_03865"
     CDS             561..>1269
                     /locus_tag="VIJ87_03865"
                     /inference="COORDINATES: protein motif:HMM:NF013256.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443603.1"
                     /translation="MRRIALQLLTFLCILAVPLEVANSQTAIVRPTDPDLSKQPTLYV
                     VAYAHLDTQWRWQYPQVINEYIPKTMHDNFALFEKYPHYIFNFSGANRYRMMKEYWPA
                     DYMRVKSYIAAGRWFPAGSSMEESDVNSPSAESIIRQILYGNQYFRREFGKTSAEYML
                     PDCFGFPASLPSILAHMGIKGFSTQKLTWNSATTLGGRGSIEETPKGIPFNVGFWQGP
                     DGRGVIAAFNPGSYGGQI"
BASE COUNT          303 a          324 c          328 g          314 t
ORIGIN      
        1 tggtgcttca tgatgcggat ccgatccgca aagattgatt cgctataata ctgtcaatag
       61 atcatgattc ccacggttta tttcttctgg gagcgacttg ttctaaagat tcacaacgga
      121 gccgctgctc tgattcagag cacggctttg gcgctttcga caatgatgga ctagagctct
      181 aacgggacgc cgttacttaa gaaaccgtgc ctcatacgag aaccggcagt atgtcgaatc
      241 cggttattag tttgggaaca gcaagcggtt gaccctgact ttcctaaggg tgggcgagtt
      301 ttagtagccg cggcaggggc tggtcatgag atgatcgcgt tatcgcgccg gctttaatgt
      361 ggcggattcg attgttgtcc agcgggatta gatcttgtct tctacaatgg cggaacctgc
      421 tacggtcatg cagtgggtct agtccgtgag gagcgactgc agtcgacgct ctagactcgc
      481 atttgatgaa cggttctaaa aatccaaccg gcaccagcag agtttgccta aaagcttaac
      541 tcgagaacag gagcaattcg atgagaagaa tcgcattgca gttactgaca ttcctatgca
      601 tattggcggt gccgttggag gttgcaaaca gccaaaccgc gatcgttcga cccaccgatc
      661 ccgacctctc aaaacaaccc accctctacg tcgtcgccta tgcgcacctg gacacacaat
      721 ggcgctggca gtatccgcag gtcatcaatg aatacatccc gaagacgatg cacgataact
      781 ttgctctctt cgaaaagtat ccgcactaca tcttcaactt cagtggcgca aaccgctatc
      841 gcatgatgaa agagtattgg ccggccgact acatgcgtgt gaagtcgtac attgctgccg
      901 gtcgttggtt tcctgccggg tcgtcgatgg aggaatcaga tgttaactct ccctcggccg
      961 agtcgatcat ccggcaaata ctttatggca atcaatactt ccgtcgcgaa ttcggcaaga
     1021 ctagtgctga atacatgctt cccgattgtt tcggttttcc cgcttcactg cccagcatac
     1081 tggcgcacat gggtatcaaa ggtttctcta ctcaaaagct cacgtggaac tcagcaacga
     1141 cattgggtgg tcgaggatcg atcgaagaga cacctaaggg catacctttc aacgtcggat
     1201 tctggcaagg tcccgatgga cgtggcgtga tcgcggcttt caatccgggc agttacggcg
     1261 ggcaaattc
//
LOCUS       DATCGC010000404         1530 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_172374, whole genome shotgun sequence.
ACCESSION   DATCGC010000404 DATCGC010000000
VERSION     DATCGC010000404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1530
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_172374"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1024)
                     /locus_tag="VIJ87_03870"
     CDS             complement(<1..1024)
                     /locus_tag="VIJ87_03870"
                     /inference="COORDINATES: protein motif:HMM:NF001813.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence/damage-inducible protein A"
                     /protein_id="HEY5443604.1"
                     /translation="MFETLTAEIIAIGSELLAPDRADTNSLWLTEKLNQLGIEVKLKT
                     IVGDDDARLEEAIRDAVRRSKVVITTGGLGPTEDDITRKITARALGRRLLLDENVLAE
                     IKQRFQGFGVAMPERNSRQAMVIEDADVLPNPNGTAPGMFIDHEGTAIVLLPGPPREM
                     KPMFENHVGSRLEGRAGKIRVVRRILRVAGLGESAVDEKIAPVYTQYDNPQTTILFNQ
                     SEIEIHLTARGRTEDEANALLDRVVLQLEEKLGNSIFSFCGEKMEEIVGLKLSVGNYT
                     LSVAESCTGGLLAQRITDVPGSSKYFIEGVVTYANEAKTRALGVEPILLLEHGAVSAP
                     VAEAMAE"
     gene            complement(1040..>1530)
                     /locus_tag="VIJ87_03875"
     CDS             complement(1040..>1530)
                     /locus_tag="VIJ87_03875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443605.1"
                     /translation="VIEEGMEVIHGMPDPPPLHLFTLAALHHVTGNYGACANLLTSLV
                     EDEYSDERYHSTPSPRLRRYVSLLRKIESEPSLAPQTLGAVRSLERMRRRQASSLLTS
                     SRKALSTERLSDHTAEDVDGVAERILDCVVNARTTDHNVVRQPIGEVLRDIYQDVETP
                     TN"
BASE COUNT          333 a          416 c          386 g          395 t
ORIGIN      
        1 cctcagccat cgcttcggcg acaggcgcgc tgacagcgcc atgttccaac agcaggattg
       61 gttcgacacc gagcgcgcgc gtcttggctt cgttagcata agtgacgacg ccttcgatga
      121 agtacttcga cgaccccggc acgtcggtta ttcgctgggc aagtaatccg ccggtacagc
      181 tttcggcgac agacaatgtg tagttcccaa ccgacaactt cagcccaaca atctcttcca
      241 tcttttcgcc acaaaacgaa aagatcgaat tgccgagttt ctcttcgagt tgcagtacta
      301 cgcgatcgag taatgcgttc gcttcatctt ccgtccggcc acgcgctgtc agatgaattt
      361 caatctcgct ttgattaaaa agtatggtcg tttgcggatt gtcatattgc gtataaacag
      421 gcgcaatctt ctcatccacg gcagactcgc ctaaaccagc gacacgcaat attcggcgca
      481 ccacgcgaat tttgcccgct cgtccttcga gtcgtgagcc gacatgattc tcaaacattg
      541 gtttcatttc acgcggcggg cccggcaaca acacgattgc cgtgccttcg tgatcgatga
      601 acataccggg cgctgtacca ttcggattgg gaagcacgtc ggcgtcctct atcaccattg
      661 cctgacgaga gtttcgctca ggcatggcga cgccgaagcc ttgaaaccgt tgcttgattt
      721 cagcaagcac attctcatcc agcagtaagc gtctgccgag agcacgtgct gttatttttc
      781 tggtgatgtc gtcttcggta ggaccaaggc cgcctgtggt gatcactact ttcgagcgtc
      841 gcacagcatc tcgtatcgct tcttcgagac gcgcatcgtc gtcacctacg atcgttttga
      901 gttttacctc aattccgagt tggttgagtt tctcggtaag ccaaagacta ttggtgtcgg
      961 cgcgatcggg agctagcaac tccgaaccga tggcgatgat ttcggctgtt aaggtttcaa
     1021 acaaactgga tttcaacttt tagttggtag gtgtttcgac atcctggtag atgtctctta
     1081 agacttcgcc gatgggttgc cggacaacat tgtggtccgt cgttctcgcg ttaaccacgc
     1141 aatcgagtat tcgctcagcg actccgtcga catcctctgc tgtgtggtcg ctcaaccgtt
     1201 cagtcgataa agctttccta cttgaagtca gcagactgct cgcctgcctt cgtcgcatac
     1261 gttccaacga tcgaacggcg cccagcgttt gcggagcgag ggagggttca gattcaatct
     1321 tccgaagtag cgaaacgtaa cgacgcagtc ttggcgaagg agttgagtga taacgttcgt
     1381 ctgaatattc gtcttcaacc agactcgtta acaaattggc acaggcacca tagtttcctg
     1441 ttacgtggtg cagagcggcg agcgtaaaca gatggagtgg cggtgggtcc ggcatcccat
     1501 gaatgacttc cataccttct tcgataactt
//
LOCUS       DATCGC010000405         1178 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_371812, whole genome shotgun sequence.
ACCESSION   DATCGC010000405 DATCGC010000000
VERSION     DATCGC010000405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1178)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1178)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1178
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_371812"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            219..>1178
                     /locus_tag="VIJ87_03880"
     CDS             219..>1178
                     /locus_tag="VIJ87_03880"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY5443606.1"
                     /translation="MSSIVTNLSPSQIIQDLLNAPEVIESFRFFEQDADAITEEHIAI
                     CEIPASPFDEQARAEYLRDKLADIGLSEVTLDGIGNCIGMFRGSAASPLMVVSAHLDT
                     VFAKGTDFTVQRYQQRLLAPGISDDGSGLAALIAIARTLVNTGARTVGSILFVGTVGE
                     EGEGNLRGVRFLLTEGPWAGRIDSFLSFDGHGIDRITNQALGSHRYRVKLSGPGGHSW
                     GDFGIPNPVHALGRAISRLASYPFPKEPRTTFNVGKVQGGTSVNAIPSEASMDIDLRS
                     SDEEELRRLDAYFRRSVHEAVDQENGGRRPGDSELSLSIDLVGN"
BASE COUNT          282 a          290 c          310 g          296 t
ORIGIN      
        1 cagaatctac gaatatgcga aagcggcgca cggcgttctc gaagaaagtg agattagaca
       61 actgctgtag ctggagaaaa gaatctcaga tctcagatat aagatctcag actcggtttt
      121 gttttcacag ccttatcaat ctggatccaa cgctgaacct tgatttgtcc gtacattgaa
      181 atctgaaata tgagatctga actctgaaat tcttttccat gtcttctata gtcaccaacc
      241 tctcaccctc ccaaatcatt caggatctac tcaacgcacc tgaagtgatc gagtcgtttc
      301 gtttcttcga acaggatgcg gatgcgatca ctgaagaaca catcgctatt tgtgagatcc
      361 cggcgagtcc ttttgacgaa caagcgcgcg ctgaatactt gcgcgacaaa ttggctgata
      421 tcgggttatc agaggtgacg ctcgatggga ttggcaactg tatcgggatg tttcggggta
      481 gtgcagccag tccactaatg gttgtcagtg ctcaccttga taccgtcttc gccaagggta
      541 ccgactttac cgtgcaacgc tatcaacaac gactattagc acccggaatc tcggacgacg
      601 ggagtggact cgcagccttg atcgcgattg ctcgtaccct cgtcaacaca ggtgcgcgta
      661 cggttggctc gattctcttt gtcggtacag ttggtgaaga aggagaggga aatcttcgtg
      721 gggttcgctt cctgcttact gaaggaccgt gggcgggccg catcgattcg tttcttagtt
      781 ttgatggtca cggtattgat cgcatcacca accaagcgct cggttctcat cgatatcgag
      841 tgaaacttag tggacccggc ggacactcct ggggcgactt cggtattccc aatccggtgc
      901 acgcccttgg ccgtgcgatc tctcgactgg cgagttatcc atttccgaaa gagccacgta
      961 cgacattcaa tgttggcaaa gtgcagggcg gcaccagtgt caacgcaatt ccaagcgagg
     1021 cttcgatgga tatcgatctg agatcgagcg acgaagagga gttgcgtcga ctcgatgcct
     1081 atttccgtcg ttctgttcac gaggcagtcg atcaggaaaa tggtggacgc cggccaggag
     1141 acagcgaatt aagcctgagt atcgacctgg taggtaat
//
LOCUS       DATCGC010000406         1773 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_72916, whole genome shotgun sequence.
ACCESSION   DATCGC010000406 DATCGC010000000
VERSION     DATCGC010000406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1773)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1773)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1773
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72916"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1615
                     /locus_tag="VIJ87_03885"
     CDS             <1..1615
                     /locus_tag="VIJ87_03885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443607.1"
                     /translation="YNSERDKLNEIMALTNPAVKKKLLESFADGADSLAVDLKAAALP
                     RQASHVILPVTKMKENEVYAPNFTNGEKVALVRYPHGGRFEIPVLTVNNRNPDAKASF
                     GEHPPDAIGIHPNVAKQLSGADFDGDSVIVIPQQAGTLIKNKKPLEDLADFDPQSEYK
                     PYDGMKTIDGGIYHADTGKVEYGPKGPQPNNKQQKMGSISNLITDMTIRGASDDKIAR
                     AVKHSMVVIDAEKHHLDYKRSEEANAIRALQQEFQPKRAGLAPGGSSTLISRAGSPEF
                     VRARKERPQSQGGPIDPLTGKKVFVPKGEDFVDASGKVRSPKQRSTKLAEEPDAFKLT
                     SGGSKDAPGTKIEAVYAEHSNRMKDLANLARKESVNVKFDKADPVQAKAFDTQVKSLN
                     SKLNEAIRNRPLERQAQVYANETLAAKKADYPDMDESQIKRVRFQALQQARSRTGAER
                     TQIDITPDEWSAIQARAISPSKLKTILDNADLDTVKKLATPRQTLKMGGGNLTRAKGL
                     LASGKYTQAEVAQALGVSLTTLKNSIKEG"
BASE COUNT          511 a          429 c          440 g          393 t
ORIGIN      
        1 gtacaactca gagcgtgaca agctcaacga gatcatggct ctcactaacc cggcagtcaa
       61 gaagaaactt ctcgagtcct ttgcggacgg cgcggattct ttggctgtcg atctcaaggc
      121 agcagcactt ccgcgccagg catctcatgt catcctcccc gtaaccaaga tgaaagagaa
      181 cgaggtctac gctcccaact tcaccaatgg tgaaaaggtg gctctcgtcc gctaccccca
      241 tggcggtcgc ttcgagattc cggtgctgac tgttaacaac cgaaatcctg atgccaaggc
      301 tagctttggc gaacatccac ctgatgcaat cggtattcat cctaatgtgg cgaaacagct
      361 ttctggtgct gactttgatg gtgactcagt catcgtcatc cctcagcaag caggaactct
      421 gatcaagaac aagaaacccc ttgaggatct tgcagatttc gatcctcaat cagagtacaa
      481 accatatgac ggaatgaaga cgattgatgg tggcatctat cacgctgata caggtaaggt
      541 cgagtacggg cctaagggac cacaacccaa caacaagcaa cagaagatgg gtagtatctc
      601 taacctgatc actgacatga cgattcgtgg agcatctgac gacaagatcg ctcgtgctgt
      661 caagcactcc atggttgtta tcgatgccga gaagcatcat cttgattaca agaggtctga
      721 agaagcgaat gctattcgtg cacttcagca agagttccaa cccaagagag cgggtcttgc
      781 accaggtggg tcttcaacac tgatctctag ggcaggatct cctgagttcg tcagggctag
      841 gaaggaacgg cctcaatccc aaggtggacc tattgaccct ctcacaggga aaaaggtctt
      901 tgtacctaag ggtgaggact ttgttgacgc tagtggcaag gtgcgatcgc ctaagcaacg
      961 atcaacgaag ttggcagaag aaccagatgc cttcaagctg acatcaggtg gtagcaagga
     1021 tgcccctggt acgaagattg aagctgtcta tgctgaacat agcaaccgta tgaaagacct
     1081 tgcaaatctt gctaggaagg aatctgtcaa tgtcaagttt gacaaagcag atcctgtcca
     1141 agcaaaagcc tttgacacac aagtaaagtc gctgaatagc aaactgaatg aagctattcg
     1201 taatagacct ttggagagac aggctcaggt ctacgcaaac gaaactttag cggcgaagaa
     1261 ggcagactac cccgatatgg atgagtccca gatcaaacgg gtacgattcc aggccctgca
     1321 acaggccagg tctagaacgg gtgctgagag aacacagatc gacatcacac cagacgaatg
     1381 gtcagcgatt caggctagag caattagccc tagtaaacta aagaccatct tggacaatgc
     1441 tgatctggat acagtcaaga agctagctac ccccagacaa actcttaaga tgggtggagg
     1501 taatcttact agagctaagg gtctcctagc atctggtaag tacactcagg cagaggtagc
     1561 tcaagctctt ggtgtatcgc ttaccacact gaagaactca attaaggagg gatgatgtgg
     1621 ttagcatgat aactacatac gataatcctt tcgatccttt cgatgagtat gatcagtggt
     1681 tcaactggga catggttcat ggttataaca cacccggcct cctagctagg ctcacgatct
     1741 catctgatca gttgagtgat gtggaccaag cag
//
LOCUS       DATCGC010000407         1169 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_338400, whole genome shotgun sequence.
ACCESSION   DATCGC010000407 DATCGC010000000
VERSION     DATCGC010000407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1169)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1169)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1169
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_338400"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..723
                     /locus_tag="VIJ87_03890"
     CDS             <1..723
                     /locus_tag="VIJ87_03890"
                     /inference="COORDINATES: protein motif:HMM:NF040138.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PKD domain-containing protein"
                     /protein_id="HEY5443608.1"
                     /translation="VPKNGIGPMRLLAVAAISRGRLGTRSIFDEILVKVEPAASLTAI
                     DFETDKPLHLGRAGQSSAFGHVDSMGKTFELPVVGEFTDGVTRRISASATGTSYQSSS
                     PHVIKVLSGGLLQILGNGKTTLTVTNRGKQASLDVTVEVNEEPNQPPVADAGPNRSVK
                     AGTKVRLNGLKSHDAEGEALYYSWSQVRGSKIALLDVDNAEPSFLAPAVSEKRIYRFK
                     LRVTDKKGADSVPAYVDVIVEP"
BASE COUNT          297 a          313 c          306 g          253 t
ORIGIN      
        1 gtccccaaga acggcatcgg ccccatgcgg ttgctggccg tggctgcaat ctcccgggga
       61 cggctgggaa cgagatccat ctttgatgaa attctggtga aggttgaacc agctgcctcc
      121 ctgacggcta tcgacttcga aaccgataaa cccttgcatc tcggacgggc agggcaatct
      181 tcagcattcg gtcatgtcga ttcaatgggc aagaccttcg aattgccggt cgtgggcgag
      241 ttcaccgacg gcgtgacccg ccggatcagt gcttcggcga ccggtacgag ttatcagtca
      301 tcgagtccac atgtcattaa agtcctttct ggtggattgc ttcagattct gggcaacgga
      361 aaaaccacac tcaccgtcac caaccgcggc aagcaggctt cgctcgatgt cacagtcgag
      421 gtgaacgaag aaccgaatca acctcctgtt gccgatgcag gcccaaaccg gtcagtcaag
      481 gctggaacaa aggtcaggct gaatgggctg aagagtcacg atgctgaagg agaggccctg
      541 tactattcat ggagccaagt gcgcggaagc aaaatcgccc tgttggacgt agataacgct
      601 gagccgtcat tcctcgcacc ggccgtgtcg gagaaacgaa tctatcggtt caagctacga
      661 gtgaccgata aaaagggggc ggatagtgtg ccggcgtatg tcgatgtgat agttgaacca
      721 taattgtcga gagacattga gtgttcgctg ttccatcaat tcccggaaag acctcgcgtc
      781 cctttgcgat gaagacatga acccgagagt cattcgttcc gtaacttcag aactcaccgc
      841 tcgaccaagt actgtcagac aacttgtccg caagcggaca actcgtcatt ggtatatccg
      901 ttcataaaaa ccagtcgctt agatcatacc gtcacgactc ttgggacacg ctgtgcggag
      961 cacaatcgtc ggcctgtcca accctgcttc ggatatcttt gaaagataac ctaaaactag
     1021 attcggttcg gtatggtatc gcccttgctc cagaaataat tcgcattgga ccaaactcat
     1081 ctcaagacaa aattactgac tcgtaactca ataccatccg ggccagccag cgagagaaca
     1141 atggccggtc tcagagtcca tgagagagg
//
LOCUS       DATCGC010000408         3086 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_439115, whole genome shotgun sequence.
ACCESSION   DATCGC010000408 DATCGC010000000
VERSION     DATCGC010000408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3086)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3086)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3086
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_439115"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            532..2547
                     /locus_tag="VIJ87_03895"
     CDS             532..2547
                     /locus_tag="VIJ87_03895"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HEY5443609.1"
                     /translation="MELPQRFEPNRRTAVNAPPRNSLVAWWHRNQIVASWIILVAPLA
                     ITMVYGAVFNLLLPYLIISSITIFAAFFIYRSTISRLNEKTNEVEALSKLHLATAEAL
                     ATAIDAKDQITHCHVRRVQVYAARMGELFGLSPDEISALKAGALLHDVGKLAVPSHIL
                     NKPGRLTTAEFEKMKIHTVVGAQILSRVDFPYPVIPIVRHHHEQWDGRGYPDRLKGEQ
                     IPITARIISVVDCFDSVREDRPFRRGMTLDEATALLLRGSGIHFDPKVVELFITHLPH
                     FDAEIAALGLTHAATTTAAHVEPIHLSEIDITQTRERGSYMAYDQIKKAHREVYALYE
                     IARTFGTSLDVEQTLQFLVDKVAHVVPFDTCMVYFYDDMKGYATARHVVGKYADLLTG
                     RSIAPGEGVTGFALANRSPVNQLHPSLDFTDLNPAAGIKFHSMASLPLFKDDVLLGAL
                     CVYSSELEQYTHDHMRLLETVTKLASDALANAMQHAEAESHALTDSLTGLPNARSLAL
                     RFEEEASRALRTDRGFQVVMLDLDEFKNVNDSYGHKLGDKMLREVAGIIQKQLREYDF
                     LARYAGDEFVAIVQEVDGSQVEELCMRIENVVSQFALAVGRNGIARVGISIGTATFGT
                     DGETLDHLLMAADDQMYRMKSNHRMERSLPPAPPAGAKLESESVVAG"
     gene            2846..>3086
                     /locus_tag="VIJ87_03900"
     CDS             2846..>3086
                     /locus_tag="VIJ87_03900"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5443610.1"
                     /translation="MAVPAENQSATLLIVDDDPGARERLRGIFENAGYRVVTATEASS
                     ALRVLKSVRCDLVALDLEMPGVDGLALCKLLRSQPL"
BASE COUNT          694 a          818 c          815 g          759 t
ORIGIN      
        1 acttgtaggt ttctggattc tgagtggctg gcgttcctga cacgaatgac cctactttgt
       61 tcgctagacg agtccagcga gattgcctcg ctgcgtcacg tgttgtcaaa cgaggttcgg
      121 aataggcacc ctgaccgaaa ttctcaatct gacctgtcag attgaaaagt tattcctgtt
      181 attcagctga ccggcggggt tttcattcag atttccttgg ctcagttcac ggcacacgaa
      241 ttgagaatag tgatcgtgcg gctgggaggc ttccgagctt cacgggctct ccgcacggag
      301 cccgtagccg ccaagttctc tgataagtag tagtcagtta attagcgagt gttacgtaat
      361 ctcacccagc atggcggctc tttgtgacag agtcgccgct tgcccaatct gccggagacg
      421 catctgattt gctcccagtg tgtctccggc aatcgcactt gttggatgag ttatcagctg
      481 aatagtaaaa accggcgtag agcataaagg ttgagttttg taggttaaca aatggagtta
      541 ccccaaaggt ttgaacccaa tcgccgcaca gcggtgaatg ctcctccgcg aaactccctg
      601 gtcgcttggt ggcatcgaaa tcaaatcgtt gcttcgtgga tcatactggt cgcaccactt
      661 gcgatcacaa tggtctacgg tgccgttttc aacctgctac ttccgtatct gatcatttcc
      721 tccatcacaa tctttgcggc ttttttcatc tatcgcagca caatctcgcg actgaatgaa
      781 aagacaaatg aggttgaggc gttaagtaaa cttcatcttg cgacagccga agctctcgcc
      841 acggctatcg acgcaaagga tcagatcact cactgtcatg ttcggcgggt tcaggtttac
      901 gccgcacgaa tgggtgaact gtttggtctc tcaccagatg aaatctcagc gctgaaagcg
      961 ggagcgctcc ttcatgacgt tggcaagctt gctgttccgt cacacatcct gaacaagcct
     1021 ggacgtctaa caacggccga gtttgagaag atgaagatcc acacagtcgt gggtgcacaa
     1081 attctcagcc gggttgattt tccttatcct gtaattccaa ttgtgcgtca tcatcatgag
     1141 caatgggacg gtcgtggcta cccggatcgg ctcaagggcg aacaaattcc gatcaccgcg
     1201 cgcatcattt cagttgtcga ttgtttcgac tccgtccgcg aagatcgacc ttttcgtcga
     1261 ggaatgactc ttgacgaagc tacagcgctg ctcttgcgcg gttcgggtat ccacttcgat
     1321 cccaaagtag tcgaactgtt catcacgcat ttgccgcact ttgacgcaga aatagctgcg
     1381 cttggtctta ctcatgccgc caccaccaca gctgcgcatg ttgagcccat tcatttgagt
     1441 gaaatcgata ttactcaaac acgcgagcgt ggctcataca tggcgtatga ccagatcaag
     1501 aaggcccacc gcgaggtgta cgcgctctac gagatcgccc gaacctttgg cacgtcgctg
     1561 gatgttgagc aaactctcca attcctggtt gataaagtcg cccacgtcgt tcccttcgac
     1621 acttgcatgg tctatttcta cgacgacatg aaaggctacg ccacagcgcg acatgtcgtt
     1681 gggaagtatg ctgacttgtt gaccggacgg agcatagctc caggagaagg tgtcacaggt
     1741 tttgcgcttg ctaatcgaag tccggtgaac cagctacatc caagtttgga ttttaccgat
     1801 ctgaatccgg ctgccggaat caagtttcac tccatggcct cgttgccgct tttcaaagac
     1861 gatgtgttgt taggagctct gtgcgtctac tcaagtgaac ttgagcaata cacgcacgac
     1921 cacatgcgtt tgctcgagac agttacgaaa ctggcatcgg acgctctcgc gaatgcgatg
     1981 cagcatgccg aagctgagtc gcacgcactc accgattcgc tcacgggtct tccgaatgcc
     2041 cgctctctgg ctctgcgatt tgaagaggaa gcatcgcgcg cacttagaac tgatcgaggt
     2101 ttccaggtcg ttatgttgga cctcgacgaa ttcaagaacg taaacgacag ttatgggcac
     2161 aagcttggcg acaagatgct tcgtgaggtg gctggaatta ttcagaaaca acttcgcgag
     2221 tacgacttcc tcgcgcgtta cgcgggtgat gagttcgtgg ctatagtgca ggaagttgat
     2281 ggtagccagg ttgaagagct ctgcatgcgt atcgaaaatg tcgtgtctca gtttgcctta
     2341 gcagtcggac gcaatggcat cgcgcgggtg ggcattagta tcgggactgc gacgtttggc
     2401 acagacggcg aaacgctcga tcatctctta atggctgccg acgatcagat gtaccggatg
     2461 aaatcaaatc atcgtatgga gcgaagtctg ccgcccgcac ccccagcggg cgcgaagctt
     2521 gagtcggaga gtgttgttgc tggctaaggg aagcaatcgg aagacgggga gacggggtga
     2581 tggggagagt gggcgacgcg gagactcagt gacgattctg actaccggcc atcctcacag
     2641 cgaccaacga attcccgtgt cgccccgtca ccccgtctcc cactcaccgg tctccttcgt
     2701 atcctacggc cggatcaatc atcttgacag catagacgct catcgctttc aatcgacttg
     2761 aggcgatcat tcgacgcgcc tcgtcagtat gaatcgcgaa acctctgtgt ttctgccagc
     2821 ttgttagcgc cggcctgttg atagaatggc agttcctgcc gaaaaccaaa gtgcaaccct
     2881 cttaattgtt gacgacgatc ccggtgcccg ggagaggctg cgcggaatct tcgaaaacgc
     2941 tggctataga gtagtcaccg cgaccgaggc gtcgtctgcc ctgcgcgtgc tcaagagtgt
     3001 ccgctgtgat ttggtcgccc tggatctcga gatgccaggt gttgatggcc tggccctttg
     3061 caaactactt agatcccaac ccctaa
//
LOCUS       DATCGC010000409         1086 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_338421, whole genome shotgun sequence.
ACCESSION   DATCGC010000409 DATCGC010000000
VERSION     DATCGC010000409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1086)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1086)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1086
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_338421"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1086
                     /gene="larC"
                     /locus_tag="VIJ87_03905"
     CDS             <1..>1086
                     /gene="larC"
                     /locus_tag="VIJ87_03905"
                     /EC_number="4.99.1.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel pincer cofactor biosynthesis protein
                     LarC"
                     /protein_id="HEY5443611.1"
                     /translation="ILGAMVAAGVDPNVLSQQLERLNVEGFNVQFKKVTRAGLGATYA
                     VVETAHEHKHRHLSDILMIIDNSSLSDGVKKRASQIFTRLAEAEARVHNEPIEHVHFH
                     EVGALDAIVDVVGSAICFELLGVERFISSPIHVGSGFVQMEHGRFPVPPPAVAELLKG
                     VPFYSTDIKGELLTPTGAAIITTVADQYGPMPTMESSTPAYGAGTREYDDFPNVLRVF
                     VGATSGSGPNVERLLMIETNIDDLSPQVLGHVMDQAFELGALDCYFTSVQMKKNRPGI
                     LLSILCEHNLKDQLMQLLFKETTTLGVRSYEVERRALERTIMRVETQYGPIDVKVARL
                     NGQVVNEMPEFEQCRRAAKEAGVPLKRV"
BASE COUNT          259 a          261 c          310 g          256 t
ORIGIN      
        1 attctgggag cgatggtcgc tgccggagtt gatccaaatg tactgtcgca acagctagag
       61 cggctcaacg tcgaagggtt caacgttcaa ttcaagaagg tcacacgcgc aggcctgggc
      121 gcaacgtacg cagttgtcga aacagcacac gagcacaagc atcggcattt gtcggatatc
      181 ctgatgatca tcgacaactc gtcgctttca gacggagtta agaaacgcgc atcgcaaatc
      241 tttacgcgtc ttgcggaagc cgaggctcgt gtgcacaacg agccaatcga gcatgttcac
      301 tttcatgagg tgggtgcact tgatgcaatt gtggacgttg ttgggtcagc aatctgtttc
      361 gagttactcg gcgttgagcg attcatttca tcgccaatcc acgtcggcag cggttttgtt
      421 caaatggaac atggtcgttt tcccgtgccg cctcctgctg tcgcagagtt gcttaaaggt
      481 gtgccctttt attcgactga cattaaaggc gaactgttaa cgcccactgg ggcggcaatc
      541 attacaacag tggccgacca gtatggccca atgccgacga tggaatcttc gaccccggct
      601 tacggtgccg ggacgagaga atacgatgat tttcctaacg tacttcgtgt atttgtcggc
      661 gcgaccagcg ggtccggacc gaacgtggag cggctgttga tgatcgaaac aaacatcgac
      721 gatctgtcgc ctcaggtgtt gggtcacgtg atggaccagg cgttcgagtt gggcgcgctt
      781 gattgttatt tcacgtcagt ccagatgaag aagaatcggc ccgggattct tttgtcgatc
      841 ttgtgcgaac acaatttgaa agaccaactg atgcaactgc tcttcaaaga gacgactaca
      901 ttgggtgtgc gaagctatga agtcgagcga cgcgcattgg agcgtactat catgcgcgtc
      961 gaaacccagt acggaccaat tgatgttaaa gtagcacgtc tgaacgggca ggtagtgaat
     1021 gagatgccgg aatttgaaca atgccgccgc gcagctaaag aggctggcgt gccgctgaag
     1081 agagtt
//
LOCUS       DATCGC010000410         1182 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_172507, whole genome shotgun sequence.
ACCESSION   DATCGC010000410 DATCGC010000000
VERSION     DATCGC010000410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1182)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1182)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1182
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_172507"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1182
                     /locus_tag="VIJ87_03910"
     CDS             <1..>1182
                     /locus_tag="VIJ87_03910"
                     /inference="COORDINATES: protein motif:HMM:NF013645.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015930 - glutamate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0016638 - oxidoreductase activity, acting
                     on the CH-NH2 group of donors [Evidence IEA];
                     GO_process: GO:0006537 - glutamate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase-related protein"
                     /protein_id="HEY5443612.1"
                     /translation="LVSEVGVGTIAAGVVKAGADVVLISGYDGGTGASPLTSIKHAGA
                     PWELGLAETHQTLVLNDLRSRVTLETDGQLKTGRDVVVAALLGAEEFGFATAPLVSLG
                     CIMMRACHLNTCPVGIATQDPELRAKFKGDPEHVVNFMKFIAQEVRELMAELGFRSLD
                     EMVGHSECLQVRQLDNWKARGLDLAPMLFRPTVPEKAEGQGKSLRGSMDESVLLPLCG
                     PALSLGESVVATLPIRNTHRAVGTRLGSEITREYGPAGLPPDTIQLTFKGSAGQSFGA
                     FVPKGMTLTLEGDANDYLGKGLSGGKIVVYPPRESSFRSEENVIAGNVALYGATSGEA
                     YINGVVGERFCVRNSGANVVVEATGDHGCEYMTGGRVIVLGDIGRNFAAGMSGGIAYL
                     VD"
BASE COUNT          265 a          263 c          375 g          279 t
ORIGIN      
        1 ctggtctccg aagtcggggt gggcactatt gccgcgggag ttgtaaaggc cggagcagat
       61 gttgtgctga ttagtggcta cgacggtggt acaggcgctt cgccacttac aagtatcaaa
      121 catgcaggcg cgccctggga actaggtctc gctgagacac accagacttt ggtgctcaat
      181 gatcttcgca gtcgggtgac tttggaaacc gatggccaat tgaagacagg tcgcgacgtt
      241 gtggttgcag ctctcctggg ggctgaagaa tttggttttg cgaccgcacc tctggtcagc
      301 ctgggatgca tcatgatgcg tgcatgtcat ctgaatacgt gtccagttgg tatcgctaca
      361 caggatcccg agttaagagc aaagttcaaa ggtgatccgg agcacgtcgt gaactttatg
      421 aagttcatcg cgcaggaagt tcgcgagcta atggctgaac taggttttcg cagtctcgat
      481 gaaatggtcg gtcattccga gtgtctacaa gtgcggcaac ttgataactg gaaggcacgt
      541 ggactggact tagcgccaat gctgtttcgg cctactgttc ctgaaaaggc agaagggcaa
      601 gggaagtcgc ttagagggtc aatggatgag tcagtcttgt tgccattatg tgggccggcg
      661 ctatcgcttg gagaatctgt agtcgcgaca ttgccaatcc gaaatacgca tcgagcggtg
      721 ggcacgcgct tgggtagtga aattactcga gagtacggcc cggctgggtt accgcccgac
      781 acgattcaat tgacgttcaa aggatccgca ggtcaaagct ttggcgcgtt cgtaccgaag
      841 ggaatgacac taactttgga gggcgatgcg aacgactacc tgggtaaggg gctttcaggc
      901 ggcaagatag ttgtctatcc gccacgtgaa tcatcatttc gctccgaaga gaatgtgata
      961 gccggcaacg tcgcgttgta tggcgcgacg agtggcgaag cctatatcaa cggagtcgtt
     1021 ggtgaacgat tctgtgtccg gaatagcgga gcgaatgtcg tggttgaggc aactggtgac
     1081 catggctgtg aatacatgac cggcggtcgg gtaatcgtgt tgggagacat tggtcgaaac
     1141 tttgccgctg gcatgtcagg ggggatcgcg tacctggtcg at
//
LOCUS       DATCGC010000411         2890 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_73076, whole genome shotgun sequence.
ACCESSION   DATCGC010000411 DATCGC010000000
VERSION     DATCGC010000411.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2890)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2890)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2890
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73076"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            179..1645
                     /locus_tag="VIJ87_03915"
     CDS             179..1645
                     /locus_tag="VIJ87_03915"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HEY5443613.1"
                     /translation="MKRSLLIFFLVVCLLAPSTLLGAVIQRTSRPSTGRPNAQAAAPA
                     RLPEGKIASQVLPNGLEVVVVEDHSVPLVTIALAVKNGSYTEPPELNGLSHLYEHMFF
                     KQNRAIANAEEYLRAIGSLGIVYNGTTREEVVEYYFTTTSPNLRTAFQFMKDAARYPS
                     FDEGEFSREQQVVIGEIDRNESNPFFPLNQEMNRRMFSKYTSRKNPLGSRETVGGATT
                     AMMRLIQQRYYVPNNSALVVTGDVVPTEIVKLAQEFYGDWARREKDPFVEFPLVEHPA
                     LAKSEGAVITSPVQNVILNIGWHGPSIGKDNPATYAADVFSFILRQPNSRFQRNLVDT
                     GLVTGVDLGYYTQRNVGPIQLVAQTTPDKAHAALKAIYDEVSHFNDKDYFTDDQLESA
                     KALLESDDLYSREKLSDYTHTLSFWWASTGLDYFRGYLTRLRATSRADISRYITTYIQ
                     GKPHVGLALMSPDAQARIKIQPDELMGVSALANANNDK"
     gene            1642..>2890
                     /locus_tag="VIJ87_03920"
     CDS             1642..>2890
                     /locus_tag="VIJ87_03920"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HEY5443614.1"
                     /translation="MIKTLVRVILSKSERTVFDMKRQFVTGVLLAVMLFFGAAAVSKG
                     QAGKAGANEQPQQTVQSVVAKQAALVSEFEVNGLKVLVKRREGSLTVAAGLFIRGGAS
                     NINASNAGIETLMLSASTEATTGFPRDVMRNELSRIGTVIGSSSNNDYSVLSLACTRL
                     HFDRSWQLFTDVILRPSFTKEDVALVQERTIVSLSDDTDNPDVYLQKLQDQVAYVGHP
                     YLNDTEGTPETVAKLTPDDLRRYHDKLMETSRLLLVIVGDLNVADVKELVTASVGKLP
                     RGNYKPQAVPALAFEKSTVEVTPRALPTHYVQGLFSAPSLNSPDIYAMKVASSLLRDR
                     VFEEVRVKRNLSYAPDAFLRSQAANVGGFYVTAVDANQAVKVMLSEVGKLQQQPVRAD
                     EIQAIIAQYLTTFYLGQETNAAQA"
BASE COUNT          688 a          729 c          769 g          704 t
ORIGIN      
        1 ccgggatttg tgaattttgt ggtggcaaga taacctcggg agagtttgat tgggtgctct
       61 cgaagattga gcaagacgaa tcctactcag gttgacatct aattggcagt ccaaagaatc
      121 gaattccccg ggagctttcc caaaggcatt catagagttc aacgaaatgg agttttcagt
      181 gaaacgtagt cttttgattt ttttcctcgt cgtgtgcctg cttgcgccct ccacgctgct
      241 aggtgcggtc attcaacgaa cgtcacggcc atccacggga cggccaaacg ctcaggcagc
      301 cgcaccggcc agacttcccg aaggcaaaat agcgagccag gttttaccca acggcttgga
      361 ggtcgtcgtc gttgaagatc attcggtccc tcttgttacg attgcgcttg cggttaagaa
      421 cgggtcttac acggaaccac ccgagctgaa tggattatcg cacttgtacg agcacatgtt
      481 tttcaaacag aaccgggcga tcgcaaacgc cgaagagtat ctaagagcga ttggctcgct
      541 tgggatcgtc tacaacggca ctacccggga agaagttgtc gaatactact tcacgaccac
      601 gagtccaaat cttcgtactg cgttccaatt catgaaagac gccgcgcgct atccttcgtt
      661 tgacgaaggc gagttttcgc gcgagcagca agtcgtaatc ggtgagattg atcgaaacga
      721 gtcgaaccct ttctttccgt tgaaccagga aatgaacagg cgcatgtttt cgaagtacac
      781 cagtcgcaag aacccgttgg gaagtcggga gacggtgggc ggtgcgacta cagccatgat
      841 gcgcttgatt caacagcgat attacgtacc caataattct gcgctcgtag tgacgggtga
      901 tgtggttcca accgagatcg tgaagttggc gcaggagttt tacggcgact gggctcggcg
      961 cgagaaagat ccttttgttg agtttcccct ggttgagcat ccggcacttg cgaagagcga
     1021 aggtgcggta atcacttctc ctgttcagaa tgtgattctc aacattggtt ggcatggacc
     1081 ttcgattggc aaagacaatc cggcaaccta tgccgctgac gtcttttcgt tcatccttcg
     1141 tcagccgaac tcccgctttc aaagaaacct tgtcgatact ggtctcgtca ccggcgttga
     1201 tcttggttac tacacacagc gcaacgttgg cccaatccag cttgttgctc aaacaactcc
     1261 ggacaaggct cacgccgcgt tgaaagcgat ctacgacgag gtttcacatt tcaacgataa
     1321 ggactacttc actgacgacc agcttgagag cgcaaaagct ttgctggagt cagacgattt
     1381 gtattcccga gagaagctca gcgactacac gcacacgttg agtttctggt gggcctcgac
     1441 gggacttgat tatttccgcg gttatctaac gcgcttgcgt gctacatcac gcgctgatat
     1501 cagccgctac attacgactt acattcaggg taaacctcat gtcggtctgg cactcatgtc
     1561 gcctgacgct caagctcgaa tcaagattca acctgatgag ctgatgggcg tttcggcgct
     1621 ggcaaatgca aataacgaca aatgatcaaa acactagtga gggttatctt gagtaagtct
     1681 gaacgaaccg tattcgatat gaagcgtcaa tttgttaccg gtgtcttact ggctgtgatg
     1741 ctgttttttg gcgcagctgc ggtctcgaag gggcaagctg gtaaagcggg tgcaaacgag
     1801 caaccgcaac agactgttca aagcgtagtt gctaaacaag cggcgctggt cagtgagttt
     1861 gaagttaacg ggctgaaagt cctggtgaaa cgccgcgaag gaagtttgac ggtggctgct
     1921 ggtctcttta ttcgcggcgg cgcgtcgaac atcaacgctt caaatgccgg gattgagacg
     1981 ctgatgctat cggcttcaac cgaggctact accgggtttc ctcgcgacgt aatgagaaat
     2041 gaactctcgc gaatagggac agtgattggt agttcctcaa acaacgacta ctccgtgctg
     2101 tcgctagctt gtacgcgact gcattttgat cgttcgtggc agcttttcac cgacgtaata
     2161 ctccggccgt cgtttacgaa agaagatgtc gcactcgttc aggaacgaac gattgtttca
     2221 cttagcgacg acaccgataa tcctgatgtg tatctacaga agcttcagga tcaggttgcc
     2281 tacgtcggcc atccatatct caacgacact gaaggtacgc ccgaaacagt cgccaagttg
     2341 acgcctgacg acttgcgtcg gtatcacgac aagttaatgg aaacttcgcg cctcttgctc
     2401 gtgattgttg gcgatctgaa tgtggctgat gtgaaggaac tcgttaccgc aagtgttgga
     2461 aaacttccgc gtggaaacta caagccccaa gcggtcccgg ctctcgcctt cgagaaatcg
     2521 accgtggaag ttacgccgcg tgcgcttccg acacactatg tccagggcct tttctctgcg
     2581 ccgtctctga actcgcctga catttatgcg atgaaagtgg caagctcgct gttacgtgat
     2641 cgcgtttttg aagaagtgcg agtcaagcgc aatttgtcgt atgcaccgga tgcctttttg
     2701 cggagccagg cggcgaacgt cggtgggttc tatgtcactg ctgttgacgc caaccaggcg
     2761 gtcaaggtga tgctcagcga ggttgggaag ctccagcaac aacccgttag agcagatgag
     2821 attcaggcca tcatcgcaca gtatctgacg actttttacc tgggccaaga aacaaatgcc
     2881 gcccaagcag
//
LOCUS       DATCGC010000412         1046 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_172562, whole genome shotgun sequence.
ACCESSION   DATCGC010000412 DATCGC010000000
VERSION     DATCGC010000412.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1046
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_172562"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(329..523)
                     /locus_tag="VIJ87_03925"
     CDS             complement(329..523)
                     /locus_tag="VIJ87_03925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443615.1"
                     /translation="MIDPPAIESQGLIARFMAASTPVEVYVQQHGPLSPLELDSLTQT
                     VKSLQTFLDMWKRREGPRGN"
BASE COUNT          245 a          245 c          295 g          261 t
ORIGIN      
        1 gaagtttggg aggaggaaga ggggaagggg gagttgtatc tcgtagcatt ttctggccca
       61 ctcgcagagc agttggccga tgaatatatc gcttttaaga aagctcaagc gcaacacggt
      121 gtcgccgctg cttagattca accctgccga cagtctctgg agggcggtct atccgccgat
      181 atccttagaa agattggtgg acatgcctaa agaacggatc agcatttaga atttccttcg
      241 agccagtgaa atcttcattc acgaacacga ccattattct ccctctgaac agatcttgat
      301 atggacgtcc gggtaaggat cttctacctt agttgcccct tggaccttcc ctccgcttcc
      361 acatatcgag gaatgtttgc aggctcttca ctgtctgcgt cagggagtcc aactcaagcg
      421 gtgagagtgg accgtgctgt tgcacgtata cttcgaccgg agtactggca gccataaatc
      481 gcgcgatcag cccttgggat tcaatggcag gagggtcaat catgttttta atgtactgcc
      541 cgctctcatg gcccagcact agggtgttca ctagcggctt aacttaccgt gggtgagtgt
      601 cctccaacca cgttggacgg gggtggaaag gcttgtgagc cagtcctcag ccggtgggag
      661 tggcggaagg gaacccaatt atggctaatc gtttgacttg gacttcctgg caggcttgtg
      721 cttgttgggc tttcgtccgt tgggacacca caaatagcag gggaagcgat agcggcaaat
      781 tgaggtggtt aagcagcgaa cgccattccc tcgattttaa aggaaagcgc ctttaccaac
      841 gatggtggtg gagggcaggc gtttcaacca tcattaaccg atgcgctatt tattgatatt
      901 caaggggttg cgcgctaggg tttatcccag tactagcatt agcgcaggag acatatagtt
      961 ctactctcac atcagaaaac gcgatgggaa cactgccaac gtgtggtgaa tgggctgtga
     1021 acgccatggg aattctgatg ctgaga
//
LOCUS       DATCGC010000413         1701 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_405182, whole genome shotgun sequence.
ACCESSION   DATCGC010000413 DATCGC010000000
VERSION     DATCGC010000413.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1701)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1701)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1701
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_405182"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..234)
                     /locus_tag="VIJ87_03930"
     CDS             complement(<1..234)
                     /locus_tag="VIJ87_03930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443616.1"
                     /translation="MSERLAQPLLLEGLILLAVKVVQAQAPEDPIYVKTSNGWNGAYA
                     YDNEYAEFRVIGNGAKLQDPYHILLQKNVGMMVS"
     gene            complement(227..847)
                     /locus_tag="VIJ87_03935"
     CDS             complement(227..847)
                     /locus_tag="VIJ87_03935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443617.1"
                     /translation="MTRSFFIFVAIVTLLLLPCRVWACACCAHPGEYQIELVKPDEFK
                     LSVIKRILFGTKADLWTGEADAEVAAEGLAHPAYSYSLSGSLVGSVWKLTFRNGDESG
                     TLNLPLPAKMLRFAADIHGELAKPGYPEPLLYKEWRFEGEVNGTGFFKAGITAGTKYL
                     LVFQGRGNSCDVAENFTHWQLKITGKKADYSFYGELGAPVPEKQNE"
     gene            complement(929..1468)
                     /locus_tag="VIJ87_03940"
     CDS             complement(929..1468)
                     /locus_tag="VIJ87_03940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3828 domain-containing protein"
                     /protein_id="HEY5443618.1"
                     /translation="MPMKPKTLILALLTVVASSAVVAEDGPEEVIRALYKAHRPWEHK
                     ELNLRSRAVLSKYFSPELTKLFLKNAQVERDCPKGDLCGLEFDPIIGAQDFDDHLDFK
                     LRITEATPPQTGRFEVRFKLFNEQKPEQEQVLVFQLIQVKNGWRIDDITYTKYDTTLK
                     AVITAILKEAADLKEGRSG"
     gene            complement(1510..>1701)
                     /locus_tag="VIJ87_03945"
     CDS             complement(1510..>1701)
                     /locus_tag="VIJ87_03945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443619.1"
                     /translation="ADWRYVPMLKGTEDYSRSPVYTRFLTTSYKGQLLEITFTSNLNT
                     APELKQKIDHIMDSVHLEE"
BASE COUNT          392 a          427 c          424 g          458 t
ORIGIN      
        1 ggaaaccatc attccaacat tcttttgtag caggatatga taagggtctt gaagttttgc
       61 gccgttccct atcacgcgga attcagcgta ctcgttatcg tatgcatatg cgccattcca
      121 gccgttggaa gttttcacgt aaatcggatc ttcgggagct tgtgcctgga caactttgac
      181 tgcgagcagt atgagccctt ctagcagtaa cggttgagca aggcgttcac tcattttgct
      241 tctccggcac cggcgcacca agctcaccgt agaaagagta atcggccttt ttgccggtga
      301 ttttcaattg ccaatgtgta aaattttcgg cgacgtcgca gctattgccc cggccttgaa
      361 atacgagaag gtatttggtt ccagcagtga ttccggcctt gaaaaaaccc gtcccgttaa
      421 cctccccctc aaaacgccat tctttataaa gcaacggctc ggggtacccg ggttttgcca
      481 gctcaccgtg aatgtcggct gcaaatctca acatcttggc tggcaacggt aaattgagtg
      541 tgccggattc atccccgtta cggaacgtca gcttccacac gctaccgacg agcgagccac
      601 tcagggagta gctatacgcc gggtgagcca gcccctcagc ggctacctct gcgtccgcct
      661 cacctgtcca aaggtctgcc tttgtgccaa aaaggattcg cttaatgaca ctaagcttga
      721 attcgtcagg tttgaccaat tcgatttgat attcacctgg atgggcgcaa caagcacatg
      781 cccaaacacg acacggtagt aaaagcaagg ttactatggc gacgaagata aaaaacgatc
      841 tggtcatttt gtcagttgta ttctttgact tcgtccttcg agataaatgc gcgaaacagc
      901 gagatgcttt attcatgtga gatccgcttc aaccgctcct tccttctttg agatctgctg
      961 cctccttaag aatcgcggta attactgcct taagtgtggt gtcatacttg gtataagtga
     1021 tgtcgtcgat gcgccatccg ttctttactt gaataagttg gaaaacgagt acttgctctt
     1081 gctcaggctt ctgttcgtta aataatttga agcgtacttc aaatcggcca gtttgcggcg
     1141 gcgtcgcctc agtgatgcga agcttaaagt cgaggtggtc gtcgaagtcc tgagctccaa
     1201 tgattgggtc gaattcgagc ccacaaagat cgcccttggg acagtcacgc tccacttgcg
     1261 cattctttag gaataacttg gttagttcgg gactgaagta tttcgacagc acagcgcgac
     1321 tgcggaggtt gagttctttg tgctcccacg gccggtgagc cttgtaaagc gcgcgaatca
     1381 cctcctccgg gccgtcctcc gcgacgaccg cagatgacgc aaccaccgtt agcaatgcaa
     1441 gaataagtgt cttgggtttc ataggcatca gattctgaaa attagtgtac ttgctgaaat
     1501 tcgcgtctct tattcttcga gatgcaccga gtccatgatg tgatctatct tctgctttaa
     1561 ctcgggcgcg gtgttaaggt tggaggtaaa ggtgatctct aacagctggc ctttgtaaga
     1621 agtggttaag aagcgcgtgt agacggggct gcgcgagtag tcttccgttc cttttagcat
     1681 cggaacgtag cgccagtccg c
//
LOCUS       DATCGC010000414         1545 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_338511, whole genome shotgun sequence.
ACCESSION   DATCGC010000414 DATCGC010000000
VERSION     DATCGC010000414.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1545
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_338511"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..266)
                     /locus_tag="VIJ87_03950"
     CDS             complement(<1..266)
                     /locus_tag="VIJ87_03950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443620.1"
                     /translation="MTSPKTEPDKLGHWGPYGGRFVPETLVAPLDELTEAYFVARDDQ
                     AFQSELTSLLQNYAGRPTSLFYADRLTQHAGGAKIYLKREDLLHT"
     gene            complement(293..1249)
                     /locus_tag="VIJ87_03955"
     CDS             complement(293..1249)
                     /locus_tag="VIJ87_03955"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HEY5443621.1"
                     /translation="MRRRNMSAYAEQRIPEKKTRSRGRVLLVSDHEQPALVEMLQSRG
                     IDVVGVSTGTAAIVSLQRSRPHLVVANPLATGLSVSELAKMLEQSDNGVPLVLAGTIP
                     ANHTNRLAALREGAFDYFELPAEMDLLVERSVQLIAMRQKIEKLRADADLDALTGLAN
                     RRRFRVALVRELERWRRYRVPCALLILDIDHLKDINDKFGHPSGDLVIKQVARILSEV
                     SRDNDTAARLGGEEFGLLLAGIDVEKAAAAAERLREVICRRTVEGVGVATVSIGVAGC
                     PASGNDERSLYAASDQALYVAKNGGRNRVSIAPPLQEKLPGV"
BASE COUNT          378 a          429 c          377 g          361 t
ORIGIN      
        1 gtatgtaaga gatcctctcg ctttaaataa atcttcgccc cgccggcatg ttgggtaagg
       61 cgatcggcat aaaagagcga agtaggacgt ccagcataat tttgcagaag actggtcaac
      121 tctgactgga aagcctggtc atcacgggca acaaaataag cttccgtcaa ctcgtcgagt
      181 ggtgccacca gagtctcagg cacaaatcga ccaccgtatg gtccccagtg tccgagtttg
      241 tcgggttctg ttttaggaga agtcatggga ggggggcttt cggagttacg agttatacgc
      301 cgggcaattt ctcctgaagt ggcggagcaa ttgacactct gtttcgtccg ccatttttgg
      361 caacgtagag cgcttggtcg ctggcagcat aaagcgatct ctcgtcgttt ccactggcgg
      421 gacagccggc cacgccaatg ctcaccgtcg ccacgccaac tccttccacg gtccttcggc
      481 aaatcacttc gcgcaaacgt tcagcagcag cagcagcttt ttcaacatct attcctgcca
      541 gcaacagtcc aaactcttcg ccacccaacc tcgctgcggt gtcgttgtcg cgcgagactt
      601 ctgaaagtat gcgtgcgact tgtttgatca ctagatcacc cgacggatgt ccaaatttgt
      661 cgttgatgtc tttcagatga tcgatatcca aaatcagaag tgcgcacggt acacgataac
      721 gacgccaacg ctccagttct cgcaccaggg caactctaaa acgccgtcga tttgcgaggc
      781 cagtcaatgc gtcaagatca gcgtccgcac gtagcttctc aatcttttga cgcattgcaa
      841 tcaactggac acttcgttcc accagcagat ccatctccgc gggcaattcg aaataatcaa
      901 aagcgccttc acgaagagca gccagccgat ttgtgtgatt tgctggaatg gtgccggcga
      961 gtacgagcgg aactccgtta tcagattgct cgagcatttt tgccaactca ctaacactca
     1021 acccagtggc taacggattg gcaacgacga ggtgcggacg cgagcgttgc aatgaaacaa
     1081 tcgcggcggt tccggttgaa actccaacca cgtcaattcc ccggctttga agcatttcga
     1141 ccagagccgg ctgctcatgg tcactcacca acaacacacg cccccgcgag cgagtcttct
     1201 tttccggaat tctctgttca gcgtacgcag acatatttcg acgacgcatg atcaatttag
     1261 ctgacgggtt taagtgggga ggactaccga gtatcgaggg gacactcact agaatactct
     1321 ggacgacagg cacagcgtca aggtttaaca ccatctgttt atgaattgat tgtaagtgcc
     1381 gcaaatttac cttcctaaac gagcgcgttc caagaaatct ttgagacgaa ccaagtcctt
     1441 ctttccaggt gcggcctcaa tcgagctgca tgcatctact gcatatgggc ctacgctggc
     1501 gatagcttcc tgtacattct ccggggacaa acctccagcc agaaa
//
LOCUS       DATCGC010000415         1636 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_39579, whole genome shotgun sequence.
ACCESSION   DATCGC010000415 DATCGC010000000
VERSION     DATCGC010000415.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1636)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1636)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1636
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39579"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            499..969
                     /locus_tag="VIJ87_03960"
     CDS             499..969
                     /locus_tag="VIJ87_03960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443622.1"
                     /translation="MKSSLGTSFLKATLLIVLFAWCLSGPTGAQAGGKDQLSPGPVRP
                     GNLDYRTELPQGFLKVYSAIDRFKDGDAWYFPHSSYAIYKIDGRLYENVRNHSSAADE
                     VPEVVALPVGTYTVVARSERGGYASMLVVIKEGEQVVLDLDLWETKTQRSLVHN"
     gene            983..1303
                     /locus_tag="VIJ87_03965"
     CDS             983..1303
                     /locus_tag="VIJ87_03965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443623.1"
                     /translation="MNAEKSEKASDGSNGRTLKIRVAAAGTLKESGQLLLTDPVSQEA
                     RNLEIARIADKPLQTEEHDLAVQRRREDLARLLIKIRRGEAGYAQVKRFFDENQGLPP
                     ETEG"
     gene            1307..1555
                     /locus_tag="VIJ87_03970"
     CDS             1307..1555
                     /locus_tag="VIJ87_03970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443624.1"
                     /translation="MTLDLIGKKVIVINEKHSIWRAIAEAVAREGADVVIWLRNGDDE
                     LKEANVLSTTQLKVPPQQSNGATPISLWRQAMALKSYW"
BASE COUNT          440 a          425 c          421 g          350 t
ORIGIN      
        1 ccgatgacat catcactaac atcaagtcct ggaagggacg gatctcatgt tcgcttctct
       61 ccttccccat cggaaagaca cagccaggcg tgtatccgta ctctgcccgc ttctaagaca
      121 tttgaataca ggcactctag cgtttgcgat gtttgtcgcc gtagcacttt cgagtagcac
      181 gcacggcaag ggctctgaaa caagagcgtc agctcccgtc aaggcgataa agaccgaagt
      241 tgctatcgac aacttcagtt cctccacaaa caccttaacg ctgccagccc gcgcaacggt
      301 cacctggacc aaccacgata acgtgctgca tgtggtcgcg agtgcagaca atcagttcca
      361 gaaatcggcc gtcttgaagt ctggccggag cttttcccac accttcgtga caacgggaac
      421 ctattcttac ttctgttcca ttcattcgcg gatgacagaa aaatcatcgt caagtaaaca
      481 tcagcccaca ccaactgcat gaaatcatca ctcggcacct cgtttttgaa agcgacgtta
      541 ctaatcgttt tattcgcctg gtgcctaagt ggaccgaccg gcgcgcaagc tggaggtaaa
      601 gatcagctct ctcccggtcc ggtacgacct gggaatttgg attatcgaac tgagttacca
      661 caaggatttc tcaaggttta ttccgctatc gatcgattca aggatggcga cgcgtggtac
      721 tttccacaca gctcttacgc catctacaag atcgacggaa ggctctacga gaatgtgaga
      781 aaccacagtt ccgcggccga tgaagttccc gaggtcgtag ccttgcctgt tggaacctac
      841 accgttgtgg ctcggtcgga gcgaggcgga tacgccagca tgctcgttgt catcaaggaa
      901 ggtgagcagg tagtcctcga cttggatctc tgggagacga aaacgcaaag gagcttagta
      961 cacaactgac gaatagcgat ctatgaacgc ggaaaagagt gagaaggctt cagatggtag
     1021 caacggccgt actctaaaaa tccgagtggc ggctgcaggt acattaaagg aatcaggcca
     1081 actactttta accgatcctg tcagccagga agcgcgcaac cttgagatcg cccggatcgc
     1141 tgacaaacca ttgcaaacgg aggaacacga tctggctgtt cagcgcaggc gagaggactt
     1201 agcccgcctg cttatcaaga tccggagagg cgaagccgga tacgctcaag ttaaaaggtt
     1261 tttcgatgaa aatcagggat tgcctccaga aacagagggc tgacttatga ccctcgatct
     1321 tatagggaaa aaggtcattg taattaacga gaaacattct atctggcgcg cgattgccga
     1381 agcagtggcg cgtgaaggag ccgacgtagt gatttggctg cggaacggcg atgatgagct
     1441 gaaggaagca aacgtattgt caacaacgca gctgaaagtc ccaccgcagc agtccaacgg
     1501 agcaacgcca atctcgctct ggcgccaagc gatggccctt aaatcttact ggtgatccag
     1561 ttggacaacg ccaagacctc acgtctcaaa gattttttgg aataaaaacg aatcggatcg
     1621 gttaggaaag ggcgag
//
LOCUS       DATCGC010000416         1045 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_139065, whole genome shotgun sequence.
ACCESSION   DATCGC010000416 DATCGC010000000
VERSION     DATCGC010000416.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1045)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1045)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1045
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_139065"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(263..347)
                     /locus_tag="VIJ87_03975"
     tRNA            complement(263..347)
                     /locus_tag="VIJ87_03975"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(312..314),aa:Leu,seq:taa)
BASE COUNT          247 a          259 c          284 g          255 t
ORIGIN      
        1 ccatgcccct tcatctgacc gctaagtatt cacattgaac ctccgggttt ctttgtcctg
       61 cgcgtcccgt cggacgtggc cgagaacaat ctcttcttgc ttctgaaaga gcgaagccag
      121 ccagatttac agacgatcga cggaacttga caaatacttg acggataggt ggtggtttcg
      181 tgcgtttccg tgcgcgacta ttcacaatcg acaacatcgc gaatagtagc cgttttacct
      241 agcaaaatgg ctattttaga ggtgccgatg atgggattcg aacccataca gagctatcgc
      301 tctaacggat tttaagtccg ttgcgtctac cattccgcca catcggcgct gtgacgtgca
      361 ttctaagctt cttccagtat cggcgaaaat ggatttcgca gtgagcacca gacttccacg
      421 cgagaactct cttctgagtc gacgcaaaga ggtccacggt tgggccctgc acacgacatg
      481 acggtggccg tagacgaaag gttcgggctc ttacgcaagc tgatctacaa gatctggcta
      541 atgcggcact ggcgcaaccg agttatggga cgtgctcctt ggctcggtgc attcgcagcc
      601 cacaattgcc gcgtgggtcg ctgcaaatgt gtggactgac taccctcctg aatcagccgt
      661 tcggacgcag ctgcttttcg gaagatcaat acacgacatt ggaagattca aatggaagtt
      721 gcgccttgac ctcgaaaatg tcttaaaaca tcattgatac gatattgacc gggagtgata
      781 tgatgatgag agcatcgttt gcttggcgat gtctcgtatt tgccgcgtcg gtttgcggct
      841 gggttatcct tgcgaattca caggagaaaa agttgtggca agtttacgcc gaggcgggtg
      901 agacgtcatt ccaacaggat cgaccatcga ccgcggaagc gatgttgtta agcgcggtca
      961 aagaagcgaa ctcagagggc gtgcaggatc cgtggttagg caagatcaac tatgaacttg
     1021 gggatctcta ctctcgcgcg ggaga
//
LOCUS       DATCGC010000417         1459 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_439203, whole genome shotgun sequence.
ACCESSION   DATCGC010000417 DATCGC010000000
VERSION     DATCGC010000417.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1459)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1459)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1459
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_439203"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..388
                     /locus_tag="VIJ87_03980"
     CDS             <1..388
                     /locus_tag="VIJ87_03980"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEY5443625.1"
                     /translation="YTWLRRITINTFLNHQRSNSSRPGQSITVEPDCAELASALASEQ
                     SIYNKVLFGTVLGALAELTPPQRLIFLLRHYEGMSYDEIATAMSCSTGTAKKSVWRAL
                     GKLRAKLNVSNANASDESVVRLAAEY"
     gene            402..1064
                     /locus_tag="VIJ87_03985"
     CDS             402..1064
                     /locus_tag="VIJ87_03985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443626.1"
                     /translation="MHNCKATRELFTELLLDGVDRRPNRSLVNELNACPGCFEEFGSV
                     KETLRVTRRSMERAAPTESYLIAYNASLKQKIVEAEMIPVQSARPANQMSWLNLFFRS
                     SVRIPVPVGVSLLLIIALAFVLTTLAYRRARDPVQITSVVQVPVEVPVVREKIVTQVV
                     YRERKRATVSKAPSRVASSTDVDSALAASRKHDVRPTLIGFKPLDEVKLTVIKGGSPD
                     EK"
     gene            1054..>1459
                     /locus_tag="VIJ87_03990"
     CDS             1054..>1459
                     /locus_tag="VIJ87_03990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443627.1"
                     /translation="MRSRIWALLLCIHCLGLAAAAQNPAKRQVVLQVSNGGFISFKSE
                     TSADNKNTTDSKSLASLIYSQALSTDNHIIHRVLTDADQRVIFGYDLSVVSDPLTRKF
                     SIGVLPADEAFRRTFLKDSAQPATETFATFPKS"
BASE COUNT          364 a          364 c          377 g          354 t
ORIGIN      
        1 ctatacatgg ttgcgcagga tcaccatcaa cacgtttctc aatcatcaac gatcaaactc
       61 atcgcgacct ggtcagtcaa ttacggttga gcctgactgt gctgaacttg catctgcact
      121 cgcgtccgaa caatcgatct acaacaaggt gctgtttgga acagtgctgg gtgcgctggc
      181 tgaacttact cccccacagc gactcatctt tttgcttcgt cactatgaag gtatgtctta
      241 tgacgaaata gcaaccgcga tgagttgttc aactggaact gcgaagaagt ctgtctggcg
      301 cgctctggga aaactgcgcg caaaactcaa cgtcagcaac gccaacgcat cggacgaaag
      361 cgtcgtgcgc ctggcggccg agtattgagt aggagttact tatgcacaac tgcaaagcaa
      421 caagagagct gtttactgaa cttctattgg acggagtcga tcgtcgtccc aatagatccc
      481 tggtgaatga actgaatgcg tgtcctgggt gcttcgagga atttgggtcg gtcaaggaaa
      541 ctctgcgagt caccagaagg tcgatggaga gagctgcgcc aacggaaagt tacttgattg
      601 cttacaacgc gagtctaaaa cagaaaatag ttgaggcgga gatgatccca gtccagtcgg
      661 ctcgccctgc gaaccaaatg tcctggttga atctgttttt tagatcctca gtgcggatac
      721 cggttccagt tggagtttcg ctcttactca tcattgccct ggcgtttgtt ctaacgacac
      781 ttgcgtatcg acgggccagg gaccccgttc aaataacttc cgtcgtgcaa gtccctgtag
      841 aagtgcccgt ggtacgcgag aagattgtta cgcaagtggt gtatcgagag agaaagcgag
      901 caacagtttc gaaggcgccg agtagagtgg ctagttctac ggacgttgat tcggcgctag
      961 ccgcatcacg aaaacatgac gtgcgaccaa ctctgatcgg gtttaagcca ctcgatgagg
     1021 tgaagctgac tgttatcaaa ggagggtctc cagatgagaa gtagaatctg ggccttacta
     1081 ctttgtattc actgtctagg acttgcggct gccgcacaga atccggcaaa gcgccaggtt
     1141 gtgctccagg tctccaacgg tggttttatc tcattcaaga gtgaaacctc tgcggataat
     1201 aaaaacacga cggacagcaa gtcgttagct tccttgatct attcacaggc tctgagcact
     1261 gacaaccaca ttattcatcg cgtgctgact gacgcggacc agagagtaat ttttggttac
     1321 gatctctccg ttgtttcgga tcccttgacc aggaagttca gcatcggagt attacccgct
     1381 gatgaagcat tccggcgcac gtttctgaaa gattcggcac agccggcaac cgagaccttc
     1441 gcaacctttc ccaaatccg
//
LOCUS       DATCGC010000418         1754 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_139079, whole genome shotgun sequence.
ACCESSION   DATCGC010000418 DATCGC010000000
VERSION     DATCGC010000418.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1754)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1754)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1754
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_139079"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(392..712)
                     /locus_tag="VIJ87_03995"
     CDS             complement(392..712)
                     /locus_tag="VIJ87_03995"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEY5443628.1"
                     /translation="MEEITSTELKQRLDKGDDIQLIDVREDSEVAIARIPNSIHIPLG
                     QVLARMNEIDQTRETVVHCKMGGRSARAIDALQRSGYTGKLINLKGGIIGWSNEVDPT
                     VAKY"
     gene            943..>1754
                     /locus_tag="VIJ87_04000"
     CDS             943..>1754
                     /locus_tag="VIJ87_04000"
                     /inference="COORDINATES: protein motif:HMM:NF042562.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6687 family protein"
                     /protein_id="HEY5443629.1"
                     /translation="MRFEFYSEAINDVPKLSVDGTVSNSIHFSHWQGNKTPTELKADT
                     STEIALNLVTSPRRAELTKNIELVTNNHFDTDGMLSVWTVMNGARAAKYRDVLIAAAE
                     AGDFSEYSSADGVRISLAIQGSDQAIPTDDTGSPLARLLAGEDVNDDARCYEIIMPEV
                     ENLLTNINDYEPLWREGWKRIVDALESFDRGLSTVTQLPESNVALICLAPEIFSNEGF
                     NPTRHSAPYTAISKFARGELFVIATPAQGGWFYRIDYPYYSWAETVVRPKIER"
BASE COUNT          435 a          448 c          430 g          441 t
ORIGIN      
        1 tgtttccatt ttgagctatg gcaattccgc ctgaagcgag aacgatgcca agcaacagca
       61 acaaactacc ggactttctg ttcttcatta acctttcctc cattgcattc tttagtcagt
      121 tttgggctca ctaaaacttc gttccggagg agagacaaca cttcaccaaa gacgcagacc
      181 gactgcgcta tagaagcttg cgatttgtaa tttagcttca gtaaccccag ccgaaaggtt
      241 agacgcggca ggatagtgag aggtcggaat ttcttgacca ctgaactttg agcttaggac
      301 tttgtacttt gcctgctgaa catcgaagac cttcaactga aaggggctga tcttcaaagc
      361 acaaagtaca aagttctaag ctccgctttg tttaatactt cgccacggtc gggtcaactt
      421 catttgacca gccgatgatt ccacccttga gattgatcag cttaccggta tagccagagc
      481 gttggagggc atcaatcgct cgagcgctac gtcctcccat cttgcaatgc actactgtct
      541 cgcgtgtttg atcgatctca ttcatgcgag caagcacctg accgagtgga atatgaatcg
      601 agttgggaat tcgtgctatc gcaacctcgc tgtcctcacg cacgtcgatg agttgaatgt
      661 cgtcgccttt atctagacgt tgttttagct cagttgaggt gatctcttcc attgttcact
      721 cccgtaatgt ttggtttagc gaaagtatcg gatgaactag acgcttggca agcgcacctc
      781 tttggagtgc ggtggcctga caccgctttg gcaaagaatc gctcaagtga aagtcgcact
      841 aacaaagggt gccgggccac cccattccaa agaggcgcct ccattcagta tgccgtggga
      901 cttaggctaa actgttagtg cacactcttg gaaatgccac atatgagatt cgagttctat
      961 tccgaagcaa tcaacgacgt ccccaagtta tcggttgatg gcacagtttc gaacagcatt
     1021 cacttctcgc actggcaggg aaacaaaacc ccaactgaac tcaaggctga cacgtcgact
     1081 gaaattgccc tcaatctcgt tacatccccc cggcgagctg aacttacaaa aaacatcgag
     1141 ttggtaacta acaatcactt cgataccgac ggcatgttgt cagtgtggac cgtgatgaat
     1201 ggcgctcgtg cggcaaagta ccgcgatgtc ctgatcgctg ctgctgaagc gggcgatttt
     1261 tcggagtatt cgagtgccga cggggtgcgg atcagtttgg caatccaggg ttcggaccag
     1321 gcgatcccaa cggacgatac aggttcacct cttgcgcgct tgttagccgg agaagacgtg
     1381 aacgacgacg cccggtgcta cgaaatcatc atgcctgagg ttgagaatct gctgaccaac
     1441 atcaacgatt atgagcctct atggcgtgaa ggatggaaaa gaattgtaga tgcactggag
     1501 agttttgatc gaggcttgtc gacagtcact cagctgccgg agtccaatgt cgctctaatt
     1561 tgtctcgcgc cggaaatctt tagcaacgaa ggcttcaacc caactcgcca ttcagcaccc
     1621 tacacggcaa tctcaaagtt tgcgcgcgga gaattgtttg tgatcgcaac ccccgcgcag
     1681 ggtggctggt tttatcgtat cgattatccc tactactcat gggccgaaac agttgtgcgt
     1741 ccaaagattg aacg
//
LOCUS       DATCGC010000419         1154 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_439233, whole genome shotgun sequence.
ACCESSION   DATCGC010000419 DATCGC010000000
VERSION     DATCGC010000419.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1154)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1154
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_439233"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            515..>1154
                     /locus_tag="VIJ87_04005"
     CDS             515..>1154
                     /locus_tag="VIJ87_04005"
                     /inference="COORDINATES: protein motif:HMM:NF024371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3857 domain-containing protein"
                     /protein_id="HEY5443630.1"
                     /translation="MERVQNKLRKSQAIGAKMFVLMLRHCCNTWMILAVALTTTTGLS
                     AQIVNNPPHFEVRPVPSWVKPIEPGSDIEVEADNAGMVYLLADRQENVERGAYYYHEV
                     RKITAENGLQDGASISALFDSRFTRVIFHSIKLTRNGTASDRLDRSRIKLLPRETDPE
                     RSLFDHFYRAQTVLDDVRVGDVIEFAFTREGVDPSMRGKYSKIFVLQWDALIL"
BASE COUNT          287 a          299 c          290 g          278 t
ORIGIN      
        1 gaagcctcag cgcatgagat cgctagtaag aaggaacgac cggaaagtgt tgagagagtt
       61 ttgcacaaac tgaagcagag cgttgaaaag ttcgaagctt ctcatccaca gctgacgaca
      121 tttgtcacag aatattccgc agtgctctcg ggcatgggca tctgatttct gccttcggaa
      181 ccgagacatt caaaccgccg agcagcaatt ccctcctcgt cgccaaatcc accgttcgct
      241 taagactgcg cttgcatgtt ttgccaggtt cccacaataa cgccatctgc gtagaaagcc
      301 ttataacttg tacgaatcta gctgttgtga gattcccatc ggcgagaaca aagcttgatt
      361 tctagacgca ggtctgccga tcgcctgccc gtgcgccttc ctgctttcgc aagaactatg
      421 agctttcgct cggcgcaaga acgcgcttgc taaccgcaat atgaccgttt caaagaccgc
      481 ttgagaacgc cgccgtttcg tcgctcacac tgcaatggaa agagtgcaaa acaagcttcg
      541 aaaatcacaa gcaattggcg ctaagatgtt cgttctaatg ctacgtcatt gttgcaacac
      601 ttggatgatt ctcgctgtag ctttgacaac aacgacgggt ctgtcggccc aaatcgtaaa
      661 caatccgcct catttcgagg ttcgtccggt gccctcatgg gttaagccaa tcgaaccggg
      721 cagcgatatc gaagttgagg cggacaatgc cggcatggtt tatctgctgg ctgatcgaca
      781 ggaaaatgtt gaaagaggcg catattacta ccacgaggtg cgcaagatca ccgcggaaaa
      841 cgggcttcaa gacggcgcgt cgatctcggc tttgttcgat tccaggttta ccagagtaat
      901 ctttcattcc attaaactga cacgcaacgg aacggcctcg gatcggcttg accggtcgcg
      961 gattaaactg cttccaagag agacggatcc agagcgttcg ctcttcgacc acttctatag
     1021 agcacaaacg gtcttggacg atgttcgcgt tggcgacgtc atcgagttcg cttttactag
     1081 agagggcgtg gatccttcga tgcgtgggaa gtacagtaaa atttttgtgc ttcaatggga
     1141 cgccctgatt ctcc
//
LOCUS       DATCGC010000420         2459 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_371978, whole genome shotgun sequence.
ACCESSION   DATCGC010000420 DATCGC010000000
VERSION     DATCGC010000420.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2459)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2459)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2459
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_371978"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            90..>2459
                     /locus_tag="VIJ87_04010"
     CDS             90..>2459
                     /locus_tag="VIJ87_04010"
                     /inference="COORDINATES: protein motif:HMM:NF012403.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140658 - ATP-dependent chromatin
                     remodeler activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SNF2-related protein"
                     /protein_id="HEY5443631.1"
                     /translation="MSLKGKFSNEFNPKIRDRGVAYFRSGAVEILEHSITHVNARVKG
                     TVDYLVRLELGANSFNVACTCPYFDGGEECKHVWATMLAADNLNYLSSIDGYGPIKLL
                     YDDSAVEELEIFSGNNHDQLDATPQPLWQQQLSTISNSIKSDRTQLRNNWPEGREIFY
                     IVDPRYSRSSGQLSIEIGYREHKKNGEWSKIKSARIQQSQVAKLPDETDRQLLSALAG
                     ARDAYGYGYNGFELPGRFALSTTLQHFLLPVICATGRCVFHPAEKNAEYEQVNWDDQT
                     TWQFWLVVKRVGDDYELRPVVRNGDKELDFDTVAMTTDAIVIDPDFRAARFDSRGALT
                     WSNGLRQSGDFKVPAADCGELIAHLMDLPSIPNLEIPPELQFERVGFTPKPHLVIRKP
                     EFAYSPQPQLEATLFFDYGGAEIDYLDSREGIYDRNHARYILRDRAIEDVAFAQLKPL
                     GIKLSEDYLNRRKLQLLPRKLPGIVSALLGQGWRVEAEGKLYRNAATSSLSVSSGIDW
                     FELHGSLNFGDDLEVKLPALLAALRKGQSVVALGDGSFGILPQDWLQQYGLLASLGTV
                     EEDHLRFKRTQTGVLDALLAARPEISCDEMFTRIRREWQTFSGITPIEEPTGFVGQLR
                     DYQREGLGWFEFLERFNFGGCLADDMGLGKTVQVLALLESRRNGKSQPSLVVVPRSLI
                     FNWEQEASRFTPKLRVLTHTGSERSKHTKHFGHYDLVITTYGTLRRDAVHFQDVEFDF
                     VILDEAQAIKNAATETAKAVRLLKSRQRLALSGTPIENHIGELWSLFEFL"
BASE COUNT          607 a          610 c          649 g          593 t
ORIGIN      
        1 ggaaccggca aagccgcaaa ccaatctcgg agaaatgatt tttcctgctc gggtgacaac
       61 acaatctcca aacagctacc atcaagctga tgtcactcaa gggtaagttt tccaacgagt
      121 tcaatcctaa aattcgcgat cgaggagttg cgtacttccg ctccggtgca gttgagattc
      181 tcgaacactc tattacgcac gttaatgcaa gagtgaaggg aactgtcgac tatctggtca
      241 ggctagagct gggtgcgaat tcctttaacg ttgcctgtac gtgtccttat tttgatggtg
      301 gtgaagaatg caaacacgtt tgggccacca tgttggcagc cgacaacctg aactatctct
      361 cctctattga tggatacggg ccaataaaac tcctctacga cgactccgca gtggaagagt
      421 tggaaatctt ttcggggaat aatcacgatc aactggacgc tacgcctcag ccactctggc
      481 aacagcaact ctccaccata agcaactcaa tcaagagtga tcgcactcag ctccggaata
      541 actggcccga gggtcgcgag attttctaca tcgtcgatcc aagatattcg cgaagctccg
      601 gccaactcag catcgaaatc ggatatcgag aacacaagaa gaacggtgaa tggagcaaga
      661 tcaaatcggc gcggattcaa caaagccagg ttgccaaact tcctgacgaa actgatcgac
      721 agttgctctc ggcattggca ggcgctagag atgcttacgg ctacggttac aacgggttcg
      781 aacttcccgg tcgcttcgct ctttcaacca ctcttcaaca tttcttactc ccggtgatct
      841 gtgcgactgg acgatgtgta tttcatccgg ctgagaagaa tgccgaatac gaacaggtca
      901 attgggacga tcaaacgacc tggcaattct ggttagtcgt caagcgtgtt ggcgacgatt
      961 acgagctgcg tcctgtcgtg cggaacgggg acaaagaact cgatttcgac acagtcgcaa
     1021 tgaccactga tgccattgtg atcgatcctg actttcgcgc tgcccgcttc gactctcgcg
     1081 gcgcacttac ctggagcaat ggcttgcgac aatcaggtga cttcaaggtt cctgctgcag
     1141 attgcggaga actgattgct catttgatgg acttgccttc aatccctaac ctcgagattc
     1201 cacctgagtt gcaatttgag cgcgttggat ttactcccaa acctcacctg gtgatacgca
     1261 agcccgagtt tgcttattca cctcaaccac aacttgaggc gacgctgttc ttcgattacg
     1321 gaggggcaga aatcgattac ctggatagcc gcgaaggaat ttacgatcgc aatcatgccc
     1381 gctacattct tcgcgatcgg gccattgaag acgtggcgtt tgctcaactc aaaccgctgg
     1441 gtatcaaact ctcggaggat tacctgaaca ggcgaaagct tcaattgctt ccgcgcaagc
     1501 tacctggaat agtgtcggcc ctgttgggac aagggtggcg ggttgaagct gaaggcaaac
     1561 tttaccgcaa cgctgccact tcgagtttgt cggtgagttc cggaatcgat tggtttgaac
     1621 tacatggttc tctgaacttt ggagacgatc tcgaagtaaa gctacctgct cttctggccg
     1681 cgttgcgaaa aggacagtcg gtcgttgcgc tgggcgatgg aagtttcggg attcttcccc
     1741 aagactggtt gcagcaatac ggattgcttg cctccctggg aacggtcgaa gaagaccacc
     1801 tgcgatttaa acggacgcaa acaggagtgc tcgatgcgtt gttagccgct cgacctgaga
     1861 tctcgtgtga cgaaatgttc actcgcattc gtcgcgagtg gcaaacgttt agtggaatca
     1921 cgccgattga ggaaccaaca ggtttcgtgg gccagctgcg tgattatcaa agagaaggtt
     1981 tgggatggtt tgagtttctt gagcggttta acttcggcgg ttgtctcgcg gacgacatgg
     2041 ggttgggaaa gacggtgcaa gtgcttgcgc tactcgagtc gcggcgtaat ggaaagtcgc
     2101 agccttcact ggttgttgtt ccccgctcac taatcttcaa ttgggaacag gaagcatcgc
     2161 ggtttacacc taagctgcga gtgttgactc atacaggttc ggagcgcagc aagcacacga
     2221 aacattttgg tcactacgat ctcgtaatca cgacctatgg aacgctgcga cgagacgcgg
     2281 ttcactttca ggatgtcgag tttgactttg tgattctcga cgaagcacaa gcaatcaaga
     2341 atgcggcgac ggaaacggca aaggcggtga ggctcttaaa gagtcgacaa cgtcttgcac
     2401 tgagcgggac gccgatcgaa aaccatatcg gagaactgtg gagtttattt gagtttctg
//
LOCUS       DATCGC010000421         1363 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_8587, whole genome shotgun sequence.
ACCESSION   DATCGC010000421 DATCGC010000000
VERSION     DATCGC010000421.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1363)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1363)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1363
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8587"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1169
                     /locus_tag="VIJ87_04015"
     CDS             <1..1169
                     /locus_tag="VIJ87_04015"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEY5443632.1"
                     /translation="AFPDKDEFLQKFRPGETFDYILFNDIGDTVDVLQAFRNLKPLCQ
                     RHTRVLVTTYNHLWEPLVTLAEWIGMKVPRAEQNWLSTVDIRNLLKLAGFEALETHRI
                     VLLPKYFPLLSGFLNRFCARLPFLSKLCMTQVIVARKLPPPVAAEDLAVSVVIPCKNE
                     KGNVEDAVRRIPSLAGRTEIIFCDDQSTDGTADEVRRMQLCYPDKDIRLEHGPGVCKS
                     RNVWTGFDAAKGDILMILDADLTTIPEELPYFVEVIVSGQAEFVNGSRLIYPVPKGAM
                     NGANMVGNKFFSVAFTYLLGQRVKDTLCGTKVLWRSDWERVRPMLGSWGTEDRWGDYE
                     LLFGAAKLNLKILDLPVHYQERIYGSTKMTKVFRNGLVMLRMCWHGFLKLKLGY"
BASE COUNT          326 a          315 c          380 g          342 t
ORIGIN      
        1 ccgctttccc agacaaggac gagttcctgc agaaattcag gccaggtgag acattcgact
       61 acattctgtt caatgacatt ggcgacactg tcgatgtgct tcaggcattc aggaatttaa
      121 aaccgctttg tcagcggcat actcgggtgt tggtaacaac gtacaaccac ctctgggaac
      181 cactggtcac tctcgcggag tggatcggga tgaaagtacc gcgcgccgag caaaactggc
      241 tttctacggt agacattcgg aatttgttga agctagccgg ctttgaagct cttgagacgc
      301 atcgaattgt tctcttgccg aagtattttc ccttgctgtc tggtttcttg aaccgttttt
      361 gtgcgcgcct gccgtttctg agcaagctct gcatgacgca ggtgatcgtt gcgcgaaagc
      421 ttccaccgcc ggttgcagcg gaagatcttg ccgtatcggt cgtcattcca tgcaaaaacg
      481 agaaaggaaa cgttgaggat gccgttcgcc gcattccatc tctggcgggt cggacagaga
      541 tcattttctg cgacgatcaa tcgaccgatg gaaccgccga cgaggtacgg cgaatgcagt
      601 tgtgctatcc ggataaggat attcgtcttg agcatgggcc gggagtttgt aagtcacgaa
      661 acgtctggac aggcttcgac gcagccaaag gcgatatatt gatgattctc gatgcggacc
      721 tgacgacgat tcccgaagag ctgccttact tcgttgaggt gatcgtttcg ggacaggcgg
      781 agtttgttaa tggatcgcgg ctcatctatc cggttccaaa gggtgcaatg aacggagcga
      841 acatggtggg caataagttt ttcagcgtcg cttttaccta tctcctcggc caaagggtaa
      901 aggatacttt atgcggcaca aaagttcttt ggagaagcga ttgggagcga gttagaccaa
      961 tgctgggaag ttggggaacc gaagatcgtt ggggagacta cgaactcctg tttggcgccg
     1021 cgaaactgaa tcttaagatt ctggacttac ctgtacatta tcaggagcgc atttatggtt
     1081 ccacaaagat gaccaaagtc tttcggaacg gtcttgttat gttaagaatg tgctggcacg
     1141 gcttcctgaa gctgaaactt ggctactaat ccgtcttaga tttaggtctc cgaactgcct
     1201 gccaataaat ggcgcgcgat ttcgaaatcg cacgcatctg aatattttct aagtgcaaga
     1261 acgcattgcc aaagaagtcc aacatgggcg tttcctcgca cagcaagggg caggggagat
     1321 ttggaattgg gagagtccgg cgggaaaact tcgctgggcc cgg
//
LOCUS       DATCGC010000422         1262 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_306639, whole genome shotgun sequence.
ACCESSION   DATCGC010000422 DATCGC010000000
VERSION     DATCGC010000422.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1262)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1262)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1262
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_306639"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..227)
                     /locus_tag="VIJ87_04020"
     CDS             complement(<1..227)
                     /locus_tag="VIJ87_04020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443633.1"
                     /translation="MKLSRRTFTRNMLGSLLTFSLVKSLDEVGVLAYSVKPIVRKWLV
                     DMEDVTRQLRRGQLKTIEWQGLIESLLSRVDL"
     gene            432..>1262
                     /locus_tag="VIJ87_04025"
     CDS             432..>1262
                     /locus_tag="VIJ87_04025"
                     /inference="COORDINATES: protein motif:HMM:NF020844.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016837 - carbon-oxygen lyase activity,
                     acting on polysaccharides [Evidence IEA];
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnogalacturonan lyase B N-terminal
                     domain-containing protein"
                     /protein_id="HEY5443634.1"
                     /translation="MKTIKIVCLLSALLSFAMASEFVSHALTHNSTTPGVFGYTDIGD
                     AYQVDTGAGLVFQVRKTDGSITSIVFNGTEYKSTTNRFSQIASGLGTPTTVTPETDGA
                     TYVKITLQTGPTNGVVANLTHYLIVRNGENTIYMATFPTAEPGVGELRWITRLNSVLI
                     PNGPGPSDLHGTTGAIESTDIFGVADGTTRSKYYGDNITHGKDRAIDLSYNGATGPGI
                     GCWMVFGTRESSSGGPFFRDIENQSGDDQEIYNYMNSGHNQTESYRLNVLHGPYALVF
                     T"
BASE COUNT          332 a          344 c          286 g          300 t
ORIGIN      
        1 agatcaacgc gagacagcaa ggattcaata agaccttgcc attcgatcgt ttttagctgt
       61 cctcgcctca gctgtcgagt tacatcttcc atgtcgacca gccatttcct cacgataggc
      121 tttaccgaat aggcaagcac acccacttca tcaagacttt tgacgagtga gaatgtcagc
      181 aacgaaccga gcatgttgcg agtaaaagtt cgacgcgata atttcatttt gcagcacctt
      241 caagtatgaa cgtctttgcc ttgttgcata gtatctgaaa gatcaatctc ttgacatgcg
      301 ttcgcgcggc agttagcctg tgcgccctcc tccaaaaaaa gtaaaacttg cattgcacgt
      361 ttcgcctccc gacatcaacc ttgaggaagc agttttgaag atcctcacca gtctatctac
      421 gggaaagaac catgaagact ataaagatcg tgtgtctgct aagcgccttg ctctcgtttg
      481 caatggcttc agagtttgtg tctcacgcat taacgcacaa ctccacaaca ccgggtgtgt
      541 ttggatacac cgatattggt gacgcctacc aggtcgacac tggagccggt ctcgtttttc
      601 aggtccgcaa aaccgacggc agcatcacat caatcgtctt caatggcacg gaatacaaat
      661 ccaccacaaa caggttttcc cagattgctt ccggcctcgg cactccaacc acggtaactc
      721 cggaaaccga tggcgcgacc tacgtcaaga tcacactgca gaccggtcct accaatggtg
      781 tagttgccaa tcttactcac tacctgatcg ttcgaaacgg tgaaaacacg atttacatgg
      841 ccactttccc aactgcagaa ccaggcgtcg gcgagctacg ttggatcact cgcctcaatt
      901 cagtgcttat cccaaatgga ccaggacctt cggatcttca tggcacaacc ggcgcaatcg
      961 aaagtacgga tatctttggc gtagccgacg gaaccacgcg ttcgaagtat tacggcgaca
     1021 acattactca cgggaaagat cgcgcaatcg accttagtta caacggcgca actggaccgg
     1081 gcattggttg ttggatggtt ttcggaactc gtgagagcag ctcaggcggg ccattctttc
     1141 gcgatataga aaaccaaagt ggcgatgatc aggaaatcta taactacatg aactcgggcc
     1201 acaaccagac ggaatcgtac cggctgaacg ttcttcatgg tccgtatgca ctcgtgttca
     1261 cg
//
LOCUS       DATCGC010000423         1299 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_471839, whole genome shotgun sequence.
ACCESSION   DATCGC010000423 DATCGC010000000
VERSION     DATCGC010000423.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1299)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1299)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1299
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_471839"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..194
                     /locus_tag="VIJ87_04030"
     CDS             <1..194
                     /locus_tag="VIJ87_04030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443635.1"
                     /translation="KPLTFDALDSIYAEVAEELRHQYAIYYTPLNRARDGGFRRVRVE
                     MTNRSFGATTRVGYFAPKS"
     gene            320..694
                     /locus_tag="VIJ87_04035"
     CDS             320..694
                     /locus_tag="VIJ87_04035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443636.1"
                     /translation="MSSNIRVNGNDASSDPLSERWIDLRLVSGTRVMLAASALLVFII
                     DPVENSHFVGPTYVTLLLYTIYSAVLVFLSIRRSDLVPISYMHWLDMVWFLILIALSN
                     GTSSKFPSASATTSRPLSCGVC"
     gene            708..899
                     /locus_tag="VIJ87_04040"
     CDS             708..899
                     /locus_tag="VIJ87_04040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443637.1"
                     /translation="MKNPEGSIRRSAGKKRLVAVLFLFVIAGATALPSSATTPRSRST
                     NALGIVVVNNSNREIRHLY"
     gene            905..1135
                     /locus_tag="VIJ87_04045"
     CDS             905..1135
                     /locus_tag="VIJ87_04045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443638.1"
                     /translation="MDQNAWGADLLDGTVVRRGESFTITDAACQGNEIKVVAEDQQGC
                     FMYGVVSCAQANSSWTITDDTVIVAETFDCCF"
BASE COUNT          319 a          323 c          322 g          335 t
ORIGIN      
        1 ataagcctct cactttcgac gccttggatt ctatctacgc cgaagtcgcg gaggaactgc
       61 gtcatcaata tgcgatctac tacacaccac tcaatagagc acgcgatggg ggctttcgcc
      121 gagttcgtgt ggagatgacc aatcgctcat ttggagcgac cactcgcgtc ggatatttcg
      181 caccaaagtc gtagcgaaga atatcttcca aattccgcgt aacgagttct tcatttcata
      241 agagattcat attctgcagc ctgccacaga ttggcgactt gaggtcactc atgtcttcca
      301 tcgcgcatgg agtgctagat tgagtagtaa cattcgagta aacggaaacg acgctagttc
      361 agatccctta tccgagcgct ggatcgatct gcgtctggta tctggaacgc gggtaatgtt
      421 agctgcgtca gcgctgctcg ttttcataat cgatccagtc gagaacagcc attttgtcgg
      481 cccgacttat gtcactctct tgctttacac gatttacagc gccgtcctgg ttttcctttc
      541 aatccgtcgc agcgatctgg tgccaattag ctatatgcat tggctcgaca tggtttggtt
      601 cctgattttg atcgccctga gtaacgggac cagtagtaaa tttccgtctg catccgcaac
      661 tacatcaaga cctctctcct gcggtgtatg ttaatgagga gattgaaatg aagaatccag
      721 aaggaagtat tcgtcgaagc gccggcaaaa aacggttggt cgcggtgctg ttcctgttcg
      781 ttattgctgg cgcgaccgcg ctcccgagtt cggccacaac tccaaggtcg aggtcgacta
      841 atgccctggg tatcgtggtc gtcaataatt caaaccggga aatacgccat ctctactgac
      901 accggtggac caaaacgcct ggggagcaga ccttcttgat ggcacagtgg tgaggagagg
      961 cgagtcgttc accattaccg acgctgcatg tcagggaaac gaaataaagg tcgtcgccga
     1021 agatcagcag ggatgtttta tgtatggagt ggtttcctgt gcgcaggcaa actcatcatg
     1081 gaccatcact gacgatacgg tgattgtggc tgagacgttc gattgttgct tctagaccga
     1141 aaagtttgga atgttgatat gctttagctt atcgaaatat cccgttctca aaaacaacga
     1201 cgacgccatg cttagcggtc cgacaagcta taaagcatat cggacatcct aataggcaat
     1261 tctaaacggc ttcaaccaac aaatattctc acggcggcc
//
LOCUS       DATCGC010000424         1074 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_405291, whole genome shotgun sequence.
ACCESSION   DATCGC010000424 DATCGC010000000
VERSION     DATCGC010000424.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1074)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1074)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1074
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_405291"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            456..>1074
                     /locus_tag="VIJ87_04050"
     CDS             456..>1074
                     /locus_tag="VIJ87_04050"
                     /inference="COORDINATES: protein motif:HMM:NF012607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY5443639.1"
                     /translation="MDDRQPLESIVFLERGTFTINFRTPSFPHSWTDYQFTPAYQIIE
                     RLRDATIAICNKLPLRAEVLAHLPSLRLIAVAATGVDNIDLEFCRSHNIAVCNGRNYA
                     TTSLPEHVLTLIFALRRNLIAYREDVIRGAWQHAKQFCLLDHAINDVRGSTIGIVGYG
                     ALGKATENLARAVGMGVLVAERKGATVIRGGRTSFADVLRHSDVLS"
BASE COUNT          245 a          256 c          292 g          281 t
ORIGIN      
        1 cgcgaagtgt tcttttcagt attgcgcaga gtgaccgtag cattgggtat cactgcgcct
       61 ttttcatccg tgaccgcgcc ggcaagtgat ccagtggttt gtccgatcgc tgcggcggag
      121 gagcctagaa ggaataccag agacaacaac agaagccagg tagctttctt catcgcaaat
      181 tctcctttgt gagcgtcggt gagtaacgca ctatttaact tgtttacttg aggcaacgca
      241 gttgagccgc ggggctgacg tggaaccaga agcaaccgat attccagtgg gcactaattg
      301 gcgtgactca ccgcctaact gtacttatag tttggattat ggcttttgat gccggatttc
      361 ggggtgagtg aaattagcag attgctatca atatcgttca aattctcgga ttgatccatt
      421 cttgtgtaaa caaactcgaa gacaagcgat ttcttatgga cgaccgccag cctctcgaat
      481 cgatcgtttt cctggaacga ggaactttca caataaattt ccggacgccc tctttcccac
      541 attcatggac agactatcag ttcaccccgg cctatcagat tatcgagcgt ttgcgggacg
      601 caacgattgc aatctgtaac aaactgccgc tgcgcgcaga ggtattggca cacctgccat
      661 cgctgcgact gattgccgtg gccgcaaccg gtgtcgataa catcgatctg gagttctgta
      721 ggtctcacaa tatcgcagtg tgcaacggac gtaactacgc cacgacgtct ttgccggaac
      781 atgtgttgac tctaatcttc gcgctgcgtc gaaatctgat tgcctatcgt gaagacgtta
      841 ttcgtggagc gtggcagcat gctaagcagt tctgcttgct ggatcatgcg atcaacgatg
      901 tacgcggttc gacgattgga attgtaggtt acggtgcgct gggaaaagcg actgagaacc
      961 ttgcgcgtgc tgtgggaatg ggagtgttgg ttgctgagcg aaaaggcgct accgtcattc
     1021 gcggaggccg aacgtcgttt gcagatgtct tacggcacag tgatgtgttg tcgt
//
LOCUS       DATCGC010000425         1433 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_39624, whole genome shotgun sequence.
ACCESSION   DATCGC010000425 DATCGC010000000
VERSION     DATCGC010000425.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1433)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1433)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1433
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39624"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..254
                     /locus_tag="VIJ87_04055"
     CDS             <1..254
                     /locus_tag="VIJ87_04055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443640.1"
                     /translation="FDAKDSDREQPATPASGRDGIHHRTQAGPLTVSEFLSPKQALGG
                     FGLGVTSDVRAVNLPEPSSMIFLSCALLALVIFPRRIRR"
     gene            451..858
                     /locus_tag="VIJ87_04060"
     CDS             451..858
                     /locus_tag="VIJ87_04060"
                     /inference="COORDINATES: protein motif:HMM:NF028057.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="surface-adhesin E family protein"
                     /protein_id="HEY5443641.1"
                     /translation="MFIRRIVLVLLVLSCSGGLAKAEWLKIMTVSNSDGFTVYGDFTT
                     HRIDKKGLVKMWFLYDYKTAQKNYQVPYMSVRIQRQYDCKEERARTLAQSLFDGNMAL
                     GNVVSDDSSERTWGPIAPGTLGETMWKVACGKP"
     gene            complement(919..>1433)
                     /locus_tag="VIJ87_04065"
     CDS             complement(919..>1433)
                     /locus_tag="VIJ87_04065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443642.1"
                     /translation="RRQNEQDKARVDQLKQSQGRSMVSGNHCDTDSTSGANVCVTVQG
                     TNFDCSESFGNGDHDSCHVEITVSVETDYRDEKYIDGTVQCEATVATTDARGHESMIS
                     NDENTSVSLYGNESTYRSIDIAFSFLRSEEIRKVQISDLSCRIKGPDTTLLRPKRCRN
                     CQGLSQYQAP"
BASE COUNT          341 a          363 c          353 g          376 t
ORIGIN      
        1 tatttgacgc aaaggactcc gatcgtgaac aaccagctac accagcttct gggcgcgatg
       61 gcatccatca tcgcacacaa gcgggccctc tcaccgtctc ggagttcttg agtcccaagc
      121 aggccttggg gggattcggg ctgggagtaa cgtcagatgt gcgggccgtc aatctcccag
      181 agccatcctc gatgatcttc ttgtcctgcg ctctattggc cttggtaatc ttcccgcgcc
      241 ggatacgacg atgactatcg tgaacccaac gatgactttc ggccctacta gtgccacacc
      301 agttgaggga ataagcaact cgttagccaa cccatacctg agcctaccgt gggaaaagga
      361 gacaatatcg cccctgattg gaatggttgt gaatctctga ccttccttcc tcctacagcc
      421 gctccccacg gtcagacgta agggagccat atgttcattc gtcgaatcgt cctggtcctg
      481 cttgtcctta gttgtagtgg cggactcgcc aaagcggaat ggctaaaaat aatgaccgtt
      541 tcaaattctg acggattcac ggtctatggt gatttcacta cccatcgtat cgataagaag
      601 ggactggtga agatgtggtt cttatacgat tacaagacag ctcaaaagaa ttatcaggtg
      661 ccgtacatgt cagtgaggat tcaacgacaa tatgattgta aggaagaacg agcacggacg
      721 ctcgcacagt cattattcga cggcaacatg gctcttggga atgtagtttc tgacgattcc
      781 agtgaaagaa cgtggggacc tattgcacct ggtactctcg gtgagaccat gtggaaggtg
      841 gcgtgtggca agccctgaac ataccgttga atttatcccg ccaggttcac cgggttcgat
      901 gagttcctca cagataatct acggcgcttg atattgggat aggccttggc aattgcggca
      961 tctcttagga cggagaagtg tggtatccgg gcccttgatt cggcagctga gatcactgat
     1021 ttgaaccttt cgaatctcct cagagcgtaa aaatgaaaat gctatgtcaa tggaacgata
     1081 ggtagattca ttcccataca gtgaaacgct cgtgttctca tcgttcgata tcatggattc
     1141 gtgtcctctt gcatcagtgg tagctactgt cgcctcgcac tgaactgtgc catcaatgta
     1201 cttttcatca cggtaatcgg tttctacaga aacggttatt tcaacatgac agctatcatg
     1261 gtcgccattg ccgaatgact cagagcagtc aaaatttgta ccttgaacag tgacgcacac
     1321 atttgctcct gaggtagaat cggtatcgca atggtttcca gacaccatgc ttcgcccttg
     1381 gctctgcttc agttggtcaa ctctcgcctt gtcttgttcg ttttgccgcc tcc
//
LOCUS       DATCGC010000426         2022 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_139138, whole genome shotgun sequence.
ACCESSION   DATCGC010000426 DATCGC010000000
VERSION     DATCGC010000426.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2022)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2022)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2022
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_139138"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            87..824
                     /locus_tag="VIJ87_04070"
     CDS             87..824
                     /locus_tag="VIJ87_04070"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006302 - double-strand break repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY5443643.1"
                     /translation="MSLSTRPYLQEISLTPPAEEEQSYPFSIPAISKLRSLKFHQDVT
                     FFVGENGSGKSTLLEAIALAMGYGVEGGTRNMVHIQTADTISNLHQFLKLKKGFRGAR
                     DGYFLRAESFYNVATYMDSVDYLAGYGNKSLHQRSHGEAFMALLTNKFRGQGLYLLDE
                     PEAALSPSRQLAALAAIDLLVQAESQFIIATHSPILLAYPKSKIVMFDSDGLSEVEYE
                     ETEHFYITRDFLNNYQRRVEELLKDDE"
     gene            834..1322
                     /locus_tag="VIJ87_04075"
     CDS             834..1322
                     /locus_tag="VIJ87_04075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443644.1"
                     /translation="MSNQIPIELVTKPLLKCLDETFNKVHGIYLDKGTTLFETLDTVT
                     AAEASEKIGPTSATIAAQVEHVRFYLDVLNNYLRTNTIEKINWREIWETVGAVTDQEW
                     EETKSRLKASHVGVMSTLNSFEKWDGDYDIAGALSILTHTAYHLGGIRTALGAIRGRA
                     TE"
     gene            1442..>2022
                     /locus_tag="VIJ87_04080"
     CDS             1442..>2022
                     /locus_tag="VIJ87_04080"
                     /inference="COORDINATES: protein motif:HMM:NF014724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HEY5443645.1"
                     /translation="MDKRTFTLAQKIWDYHKLNHPLEKADAILVLCSHDERVAERSVE
                     LFKRNWAPLIIFSGGAGAITKQLWSEPEAERFARIAIEGGVPRENILIESRSTNTGDN
                     VRFTRQLVSDLKLNLEKFIVVQKPYMERRSYATFRKLWPEKDVIVTSPQTSLEEYLRS
                     YSHSALSHADVIGIMLGDLQRIKLYPAMGFQIE"
BASE COUNT          548 a          505 c          492 g          477 t
ORIGIN      
        1 ccaatgtttc acacaacctt ccacaaagcg aaggccgtcg ccaagctatt acaacctttt
       61 gaagactgag aactcacgcc ggcaccatgt cgctaagtac caggccctat cttcaagaga
      121 tctcgctgac gccgcccgca gaggaggagc agtcgtaccc ctttagcatt cctgccatca
      181 gcaagcttcg gagcctgaaa tttcatcagg acgttacttt ctttgttggt gaaaacggtt
      241 cgggaaaatc aactctgctt gaagcgattg cgttggcaat gggctacggc gtggaaggag
      301 gaacccgaaa catggtacac atccaaaccg ccgacactat ctccaacctt caccagttcc
      361 tcaaactcaa gaaaggtttt cgaggtgcaa gggacggcta ctttctccgc gccgagagtt
      421 tctacaacgt cgcgacttac atggattccg tcgactacct tgcaggttac ggaaacaagt
      481 cgcttcatca gcgatcgcat ggcgaagctt tcatggcttt gctgacaaac aaatttcgtg
      541 gccagggttt atatcttttg gatgaaccgg aagctgcctt gtctcccagc cgacaactcg
      601 ctgctttggc agcgatcgat ttgcttgtac aggccgagtc gcaattcatt atcgccacac
      661 actcgccaat cttgttggct tatcccaaat cgaaaatagt gatgttcgac tcggacggct
      721 tgtcggaagt agagtacgaa gaaacagagc acttctacat cacccgagac ttcttaaaca
      781 attatcagcg ccgggtcgaa gagctgctga aagacgacga atagaggtag acaatgtcga
      841 atcaaatacc aatcgaactc gtgacgaaac cacttctcaa atgcctcgac gaaacattta
      901 acaaagtgca tggcatctat ctcgacaagg gaacgacgtt gtttgagacg ctggacactg
      961 ttaccgcagc tgaggcttcg gaaaagattg gtcccacttc agccaccatc gctgctcaag
     1021 tcgaacacgt gcgcttttac ctggacgtgc taaacaacta cctgcgaaca aacacgattg
     1081 agaaaatcaa ctggcgagag atttgggaaa ctgtcggggc agttactgat caggagtggg
     1141 aggaaacaaa gagtcggttg aaagctagtc acgtaggtgt gatgtcgaca ctcaactcgt
     1201 ttgagaagtg ggatggtgat tatgacatcg ccggcgcgct atcaatactc actcatactg
     1261 cttatcattt gggcggcatt cgtaccgcgt tgggagcgat ccgcggacgt gcaaccgaat
     1321 agatctcaaa tttcagatct cagatctcca agcgcggagc atagatccaa tcagtctccg
     1381 tcatttcagt ttctgagatc tgaaatctga gatctgagat cattattctg agatcatttt
     1441 tatggacaag cgcacattca cacttgcgca gaagatctgg gactaccaca aactaaatca
     1501 tccgcttgaa aaggctgatg cgattttagt gttgtgcagt catgatgaac gggtcgctga
     1561 gagaagtgtt gaactattca aaagaaactg ggcgccgcta attatttttt ccggtggtgc
     1621 gggtgcaatt accaaacaac tatggtcaga acctgaagcg gagcgctttg cgcgcatcgc
     1681 tatcgaaggt ggagttccgc gtgagaacat tttgatcgag agcaggtcga ccaacactgg
     1741 cgacaacgtc cgctttacga gacagctagt ttcagatctc aagctaaacc tggaaaagtt
     1801 tattgtcgtt caaaagccct acatggagcg ccgcagctac gccacgtttc gcaagctctg
     1861 gcccgagaaa gacgtcatcg taacgtcgcc acaaacttcg ctcgaggaat atctccggag
     1921 ctacagtcac agtgcgctgt ctcacgccga cgtaatcggg atcatgcttg gtgatctgca
     1981 aagaattaag ctgtatccag cgatgggctt tcagattgaa ca
//
LOCUS       DATCGC010000427         5574 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_205626, whole genome shotgun sequence.
ACCESSION   DATCGC010000427 DATCGC010000000
VERSION     DATCGC010000427.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5574
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_205626"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..525
                     /locus_tag="VIJ87_04085"
     CDS             <1..525
                     /locus_tag="VIJ87_04085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443646.1"
                     /translation="DMIFREYWLPDYTTYQEPHTLDGVTGTITDALDDKLKDWRDLHS
                     VFWEGSHKPLPIAPMNARDIDINYPSIRPLGNNKTKWFRVLPANTVGKVYVTYRTKPD
                     DFEEDSDEIFMDTQLLMLGTCWDVLEDDGTNPGASDKFRILFQDALSQFNRQTFNIPL
                     DTVMSSRSTVNRWT"
     gene            528..2999
                     /locus_tag="VIJ87_04090"
     CDS             528..2999
                     /locus_tag="VIJ87_04090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443647.1"
                     /translation="MVQMLTRLKPLGRPKQPRPTPKLNNTTIRDFGGGLNVVDSEQNL
                     TSKFSPVFDNMVTYTDRRAGPRFGYEMWLKLKQGVESSGTVAAAGIATTLDSRVVSVL
                     FTAHPFVAGDHITIVGIGGSFNGITAEMLNRTHGIRRVVDANTFEIVVSGKATATGVS
                     SAFPLHWTRDTHALGGEPVECRYFANVVLLWTSAGEILTIDRTKTIQRIWSQKVAVAL
                     PGAPIGWSYTDFVAHDIFGKELICSNGHDKPLSIDFTRTDATQWVLYLVDPGNSFSND
                     KVPAFDACKSAFRFFTVHDTDPSQYPTHTTEIRIAAKDTSMVYSDAPNPNDAVDIDMS
                     KIAASPEQTVRGFATIKDALLVISPNSTTMMKLGLYNDAGQHDPQPIDTLNGFGSNAP
                     RSIVEIGSDVFMLDFNGVPSAKLSALSNAVVPERVSNYVETMLSRHIGRMRKDTMRLK
                     AFGFYDGKNKTVHFYLPKFDTQDVRKLTDDPFYFDLDMASHPFTQHSLILRHDAHLLE
                     QGDFVVIAGATGFSTILPEQINGTRKVLGVLSENYLLIEIGAQLPTTTSTNTSGGGNI
                     VTIQPVIDGSVGYIYHYVPQLKLFAWSRFKTKEYLRFNCGCGTLEGRAFLFTPDGYMM
                     RYGSPENPVYADWYGMYDFVSWTSGQTYHTKDRVFDSHDGLVYKCLADVTTTAADFQT
                     ARELEPDSWEEYKGEPISFTWELPWSDFGARQHTKALRFVHADASGQAQFTVELFSDN
                     IYRDAATGQLTPARSITFVPNEAGAYGAGQQVYGAGRRTREQKLWQMPVKCKLLKVRT
                     SGESTQSLSVSAYSFLYQKGSVVRG"
     gene            3176..>5574
                     /locus_tag="VIJ87_04095"
     CDS             3176..>5574
                     /locus_tag="VIJ87_04095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443648.1"
                     /translation="MVANIRGYTPNYNFKLVNFDTPRWHTLEYANWSQVDAMFLQLGT
                     PPVRGEWQNSIQYVVGDRVFEAETSQLYRCLVTHTSAATGTFAADRLANPSYWTIQIL
                     GVPLFRGDWLAGAVYALGDIVVTGEYHYHLCVVSHTSSTTFPPDDVFWVTVFDATNVV
                     LDTEAAATNAANSAAAAAASAAEAATSADVAEQAASLAVTAQSAFRWNFDASTVAADP
                     GMGEVRFNNATLINITQLMLSAQSADFGNPNVSGWVITWDDSTNLTSRGSIYVRNAAS
                     PENFLVFDVNGPVVDNGTWQSVTVKYIAHGGSLADGDNLAVAFTRTGNAGTSGSGAGD
                     MLSTNNLSDVADPVAAADNIGVGPTDTPSFVQVVLSSPATIPNHATRKEYVDSAGAAL
                     QANIDTKAPLASPVFTGNPTAPTPTAGDNDTSIATTAFVTAADAALQTSIKTYVDNQD
                     ALKADITYVNAQDALKAPIASPTFTGDPKAPTPSAGDNDTTIATTAFVANAVASGVVA
                     YAAPFDAMAYSGLQTNGAMEVSQEKGGALVTPASGYIVDGWLVYTGGFVVSAQQVADG
                     PVGVTSSLKVSVTTAVASIGAGDYIQIYHPIEGYRTARLWFGSAVASPITIGFWVKAH
                     RTGSYSGNVANGANNRVYVFSFAVSAADTWEYKTTTIPGDVTGTWTQGNSIGLALRIA
                     VAAGTTYQIPAGVWAANNAFGATGTINGGAATSDTFQITGVIVLPGNQAPSAARSPFI
                     MRPYDQELMTCRRYWQTNNFVLSGYNVAGGAIYGPFLFSPMRAAPTVTLPGWSSSNAG
                     G"
BASE COUNT         1466 a         1361 c         1394 g         1353 t
ORIGIN      
        1 gacatgatct ttcgtgagta ctggctacct gactacacta cgtaccaaga gccgcacaca
       61 ctcgatggcg tcactggcac cattacagat gccctagatg acaagctaaa agattggcgc
      121 gatctacaca gtgtgttttg ggaaggctcg cacaagccgc tgccaatagc accaatgaat
      181 gcgcgggaca ttgacattaa ctaccctagc atacgaccac tcggtaacaa caagacgaag
      241 tggtttagag tactaccagc taatacagtt ggcaaggtgt atgtgacata tcgcaccaag
      301 cctgacgact ttgaagaaga cagcgatgag atattcatgg atacgcagtt gttgatgtta
      361 ggcacatgtt gggacgtact tgaagatgat ggcacaaatc ccggcgctag cgacaagttt
      421 cgcatcctgt ttcaggatgc actcagtcag ttcaatcggc agactttcaa cattccactt
      481 gatactgtta tgtcgtcccg aagcactgtc aacaggtgga cctgactatg gtacagatgc
      541 ttacgcggct caagccatta ggcagaccga agcagccgcg gcctacaccg aagctcaaca
      601 acactactat ccgtgacttc ggtggtgggt tgaacgtagt tgacagtgag cagaacttaa
      661 ctagcaagtt ctcaccagtc ttcgacaaca tggttacata caccgaccgt cgcgcaggtc
      721 cacgcttcgg ttatgagatg tggctgaagc tgaaacaagg tgtagagagc agtggcacag
      781 tagcagcagc aggaatagct actacactag acagccgcgt tgtttctgtt ctattcactg
      841 cgcatccttt tgtagctggc gatcacatta ctattgtagg cataggtggc agcttcaatg
      901 gtatcactgc tgagatgctt aacagaactc acggcattcg tcgtgtagta gatgccaaca
      961 cgtttgagat agttgtaagt ggtaaagcaa cagctacggg tgttagcagt gcattccctc
     1021 tacactggac acgtgacaca catgcactag gtggtgagcc tgttgaatgt cgctacttcg
     1081 ctaatgtcgt actgctgtgg actagtgctg gtgagatact gacaatcgac cgcacaaaga
     1141 ctatacaacg tatatggagc cagaaggtag ctgtagcact ccccggtgca cctattggtt
     1201 ggagttatac tgacttcgtt gcgcatgaca tattcggcaa agagttgatc tgtagcaacg
     1261 gacatgataa gccactgagt atagacttca cacgtacaga tgcaacgcag tgggtgttgt
     1321 acctagtaga ccccggcaac tcgtttagta atgacaaggt gccagcattc gacgcttgca
     1381 agtcagcatt caggttcttc accgtacacg acaccgaccc atcacagtat ccaacacaca
     1441 caacagagat acgcatagcg gccaaggaca cttcgatggt ctacagcgat gcacctaatc
     1501 ctaacgacgc tgttgacatt gatatgtcta agattgcagc cagccctgag caaacagtgc
     1561 gtgggtttgc tacgatcaaa gacgcactgc tggttatctc tcctaactcg acaacgatga
     1621 tgaagctcgg tctgtacaac gatgcaggtc agcacgaccc acaacccatc gacaccttaa
     1681 acggcttcgg ctccaatgca ccccgttcga tagtagagat aggcagcgat gtgttcatgt
     1741 tggacttcaa cggtgtgcct agtgctaagt tgtcagcact cagcaacgca gtcgtacctg
     1801 aacgtgtgag taactacgtc gaaacgatgt tgagtagaca cattgggcgt atgcgtaagg
     1861 acactatgcg cttgaaggcg tttggcttct acgatggtaa gaacaaaaca gtgcacttct
     1921 atttgcctaa gttcgacaca caagatgtac gcaagttgac agatgatcca ttctacttcg
     1981 acctagacat ggctagtcat ccgttcacgc agcattcatt aatactgcgc cacgatgcgc
     2041 acttgttgga gcagggtgac tttgtagtta tagcgggtgc tacagggttt agcacaatcc
     2101 tgccagagca aatcaacggt acgcgcaaag tcttaggagt gttgagcgag aactacttac
     2161 tcatagagat aggtgcacaa ctaccaacaa cgacgagcac taacacaagt ggcggcggca
     2221 acattgtcac tatacaacca gtcatcgacg gctccgttgg ttacatctac cattacgtac
     2281 cacagttgaa gctgtttgca tggtcacgct tcaagactaa ggaatacttg cgcttcaact
     2341 gtggctgcgg cacattagaa ggtcgtgcat tcctattcac acctgacggc tacatgatgc
     2401 gctacggttc acctgagaac cctgtgtatg ctgactggta tggcatgtat gacttcgttt
     2461 catggacaag tggacagaca tatcacacca aagaccgcgt gttcgatagc catgatggac
     2521 tagtgtacaa gtgtctagca gatgtaacca caacagccgc agactttcaa actgcgcgtg
     2581 agctagaacc tgatagttgg gaagaataca aaggtgagcc tattagcttc acatgggaac
     2641 tgccgtggag tgatttcggt gctagacaac ataccaaagc actgcgcttc gtacatgccg
     2701 atgctagcgg tcaagcacaa ttcacagttg agttgttctc tgacaacata tatagagatg
     2761 cagcgacagg acaactaact cctgcacgct ctatcacctt cgtgccgaat gaagctggcg
     2821 cgtatggtgc aggtcaacaa gtatacggcg caggacgtag aacacgtgaa cagaagctat
     2881 ggcagatgcc agttaagtgc aaactgctta aagtacgtac aagcggagag agtacacaat
     2941 cgctgtcagt tagcgcttac agcttcctgt atcagaaagg aagcgtagtg cgcggctagt
     3001 aggcggctag tagattgtac tatgtaaggg gttgacaaat gcccgaaaat gtgctatttg
     3061 atacttatat acatacaaac ggcgaggcat cgcacgcgaa gcgggcgatg ctagtatata
     3121 tatataatct tatatatgct gacggcttta tagccactta taatgggtgg ctgtgatggt
     3181 tgctaatata cgcggttata ctcctaacta caacttcaaa ctcgtaaact tcgacacacc
     3241 acgttggcat acattagagt atgctaactg gtcgcaagtc gatgcaatgt tcttacaact
     3301 aggcactccg cctgtacgcg gtgagtggca gaactctatt cagtatgtag taggcgatag
     3361 agtatttgaa gccgaaacat cacaactgta tagatgcctt gtaactcata cgagtgctgc
     3421 tactggcaca ttcgctgcag accgtttagc taatcctagt tattggacta tacagatact
     3481 aggtgtgcct ctgtttagag gtgattggct agctggtgct gtgtacgcgc taggtgatat
     3541 agttgtaact ggcgaatatc actatcacct gtgcgtcgta tcacatacat ctagcactac
     3601 cttccctccc gacgacgtgt tttgggtaac agtctttgat gctaccaatg tagtactaga
     3661 cactgaagct gcagcgacga atgcagctaa cagcgccgcc gctgctgcag ctagtgcggc
     3721 agaggcagca actagtgctg atgtagcaga gcaagcagct agtttagctg taactgcgca
     3781 gagtgcattc agatggaatt tcgacgcttc tacagttgca gccgaccccg gcatgggcga
     3841 agtacgcttc aacaacgcta ctcttattaa catcacgcag ttgatgctaa gtgcgcagag
     3901 tgctgacttt ggcaatccta atgtgtcagg ttgggttatc acttgggatg atagtactaa
     3961 tctaacatca cgtggcagta tctacgtgcg taatgctgcc tcgcctgaga acttcttagt
     4021 gtttgacgtt aacggtcctg tcgttgacaa cggcacttgg caatctgtaa ctgtcaagta
     4081 catcgcgcat ggtggttctc tggctgacgg cgataatctc gctgtagcat tcacacgcac
     4141 aggcaatgcc ggcacatcag gtagtggtgc aggcgatatg ctgagtacta ataacctcag
     4201 cgatgttgct gaccctgtag ctgctgctga caacattggt gttggtccta ccgacacacc
     4261 gtcatttgtg caagttgtgc ttagtagtcc agctactata cccaatcatg ccacgcgcaa
     4321 agaatacgtc gatagtgctg gtgctgctct acaagcaaac attgacacaa aggctccact
     4381 agcttcacca gtgttcactg gtaatcctac tgcgccaact ccaactgcag gagataacga
     4441 cactagtata gcaactacag cattcgtcac cgctgctgat gctgcgttgc agactagtat
     4501 caagacgtac gtcgataatc aggacgcact gaaagccgac ataacatatg ttaatgccca
     4561 agatgctctc aaagctccaa tagccagccc gacattcact ggtgatccta aagcaccaac
     4621 acctagtgct ggtgataatg acaccactat tgcaacgact gcatttgtgg cgaatgcagt
     4681 cgcatctggc gtcgttgctt atgccgcgcc gttcgacgcg atggcgtaca gcggcttgca
     4741 aaccaacggc gcgatggagg ttagtcagga aaagggcggc gcgctcgtca ctccggcatc
     4801 tggttatatt gtcgatggat ggttagttta tacaggcggt tttgtggtgt cggcacagca
     4861 ggtggccgat ggtcctgtcg gcgttaccag ttcattgaag gtcagtgtca ccacagcagt
     4921 cgcttcgata ggtgcaggcg actacattca gatatatcat ccgattgaag gttatcgaac
     4981 tgctcgattg tggtttggca gcgccgtagc ttctccaata actatcggtt tctgggtcaa
     5041 ggcacatcgc actggttcat attccggcaa cgtagcgaat ggagccaaca atcgcgttta
     5101 tgtgttctcg tttgctgtca gcgccgccga tacttgggaa tacaaaacca cgactatacc
     5161 gggtgacgta actggtactt ggacacaagg taacagtatt ggactcgcgc tgcgtatcgc
     5221 cgttgcagcc ggaacgacgt atcaaattcc tgctggcgtc tgggcagcaa acaacgcgtt
     5281 tggcgctaca gggaccatca acggcggtgc cgcgaccagc gacacattcc agatcacagg
     5341 cgtcatcgtg cttcccggca atcaagcacc gagtgctgcg cgttcgccgt tcatcatgcg
     5401 gccttacgac caagagttga tgacgtgcag gcgatactgg cagacaaata attttgttct
     5461 ttctggatac aatgtagcag gcggggcaat ttatggacca ttcctttttt caccaatgcg
     5521 agcagcgcca accgtaacgc ttcccggttg gtcatccagc aacgcaggtg gaat
//
LOCUS       DATCGC010000428         1128 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_306679, whole genome shotgun sequence.
ACCESSION   DATCGC010000428 DATCGC010000000
VERSION     DATCGC010000428.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1128)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1128
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_306679"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..451
                     /locus_tag="VIJ87_04100"
     CDS             <1..451
                     /locus_tag="VIJ87_04100"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY5443649.1"
                     /translation="RLVLAGDGPADYVAVLRNKASSELAREYVLFPGWLDGEAKKLFL
                     QRASVLALPSHRENFGLCVMEALACGIPVIVSPQVNLSEAIEAAGAGWIVDVDREDLT
                     ATLREAFSSEAERLLRGKAGKEMSARFTWPQVACEILDMYAKVLTTN"
     gene            406..>1128
                     /locus_tag="VIJ87_04105"
     CDS             406..>1128
                     /locus_tag="VIJ87_04105"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEY5443650.1"
                     /translation="MRNTRYVRESVDDKLVLDQITPLILTYNEAPNLERTLRQLSWAK
                     DIVVVDSFSDDETTRIASGYSQARICQRAFDSHRNQWSFGLHDTGIKSPWVLAMDADY
                     VLTDELIAELQALNPESTVNGYRADFVYCLNGKRLRSGIYPSVTVLYRTASAEYIQDG
                     HTHRVRIDGNVGHLRSKILHDDRKPLSRWLRSQVSYAELEAKKLLASRTEPLSVNDRL
                     RMWKVIAPSAVLLYCLIIRGGLL"
BASE COUNT          251 a          266 c          333 g          278 t
ORIGIN      
        1 gcgtctcgtg ctcgcgggag atgggccagc cgattacgta gcagtattac gaaacaaagc
       61 gtcgtccgaa ctggccaggg agtacgtctt gtttccaggt tggctcgatg gtgaagcgaa
      121 aaaactcttt cttcagcgcg cctccgtgtt agctcttcct tctcatcgag agaatttcgg
      181 cctgtgtgta atggaggcat tagcgtgtgg aattccagtg atcgtaagtc cgcaggtgaa
      241 tctttctgag gcgattgagg cagcgggcgc tggttggatt gtagacgtcg accgggaaga
      301 tctaactgca acgttgcgag aagcgttcag ttcagaggca gagcgtttgt tgaggggcaa
      361 agctggcaag gagatgtccg cccgatttac ctggccgcaa gtggcgtgcg aaatactcga
      421 tatgtacgcg aaagtgttga cgacaaacta gtgctcgatc agatcacacc cctaattctc
      481 acctataacg aggcgccgaa tctcgaacga accctgcggc agctgagttg ggcgaaggac
      541 atcgtcgttg ttgatagttt cagcgatgat gaaacgacga ggattgcttc cggttattcg
      601 caggcgcgca tctgtcagcg agcgtttgat tcgcatcgca accagtggag ctttggtctc
      661 cacgacactg ggatcaagag tccctgggtg ctggcgatgg atgctgacta cgtactcacg
      721 gatgagttga ttgcggaact tcaagcgttg aatcccgaat ctacagtcaa cggctaccgg
      781 gccgacttcg tctactgttt gaatggtaag cgtcttcgca gtggcattta tccttcggtc
      841 acggtgctct atcgaacggc gtcggccgaa tacattcaag atggtcatac gcatagggtg
      901 cggatcgatg gcaatgtcgg ccatctgcgg tcaaagattc ttcatgacga tcgcaagccg
      961 ctaagtcgtt ggcttcgttc acaggtgagt tacgcggagc tcgaggcaaa gaaactgttg
     1021 gcgtccagaa ctgagccgct gagtgtcaac gatcggttaa gaatgtggaa ggtcattgcg
     1081 ccgagtgcag ttcttctcta ctgcctaatc attcgtggtg gtttactc
//
LOCUS       DATCGC010000429         1142 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_372057, whole genome shotgun sequence.
ACCESSION   DATCGC010000429 DATCGC010000000
VERSION     DATCGC010000429.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1142
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_372057"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..293)
                     /locus_tag="VIJ87_04110"
     CDS             complement(<1..293)
                     /locus_tag="VIJ87_04110"
                     /inference="COORDINATES: protein motif:HMM:NF012673.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HEY5443651.1"
                     /translation="MLNFAKQIALDAGSLLVQRLGSARVSNKGDIDLVTEADIAAEKL
                     IIDQIRSYYPRHSVLAEESGEAISIGGDGSSWKWVIDPLDGTTNYAHGYPCFCV"
     gene            complement(286..>1142)
                     /locus_tag="VIJ87_04115"
     CDS             complement(286..>1142)
                     /locus_tag="VIJ87_04115"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta hydrolase family protein"
                     /protein_id="HEY5443652.1"
                     /translation="VLMASPRVDTVRFQSKLVNATLPYNVILPSDYDISPTTRYPVLY
                     LLHGLTGHYSDWVTRTNVADYASQYRMIVVTPEGNDGWYTDSSTVATDKYESYILKEL
                     IPDVQQRYRTIEARYGRAIAGLSMGGYGSIKFGVKSPATFVFVGSMSGAFGETRMTEQ
                     EAGASRWAAALKLFGPIDSETRKANDLFLLIKELQPNRVAGLPFFYFDCGTEDSARIF
                     SYNRELAALMLEKKIPHEYRELPGDHSWGYWDKQVQEVLKIAAEKMRIPPNPTSTKKP
                     TRKLKPSA"
BASE COUNT          269 a          293 c          288 g          292 t
ORIGIN      
        1 acgcagaagc atgggtaacc atgcgcgtag tttgtcgttc cgtcgagcgg atcgatgacc
       61 cacttccatg aactgccgtc tccgccaata gagatggctt ctcccgactc ttcggccagc
      121 acgctatgtc gcgggtagta agaacgaatc tgatcgataa ttaatttttc cgcggcgatg
      181 tcggcctcag tgactagatc aatgtcacct ttgttggaga cacgtgcgga acccaggcgt
      241 tgaacaagaa gacttcccgc atcgagcgcg atctgtttgg cgaagttaag cacttggttt
      301 caatttgcgc gtaggttttt ttgtgctggt agggttcgga gggatacgca ttttttccgc
      361 agcaattttc agaacttcct gaacttgttt gtcccaatat ccccaggaat gatcccccgg
      421 gagttcccga tactcgtgcg ggattttctt ttctaacatt agcgccgcca gctcacgatt
      481 gtacgaaaag atccgagctg aatcttcagt gccacaatca aagtaaaaga acggcaggcc
      541 ggcaacacga ttcggttgta gttcctttat gagtagaaac agatcgtttg ctttacgcgt
      601 ctcgctatca atcggtccaa acaacttcaa tgcggcggcc caacgggacg cgcccgcttc
      661 ctgctcagtc attctcgtct cgccgaatgc accactcatt gatccgacaa agacgaatgt
      721 cgccggcgac ttcacgccaa actttatcga gccatagcca cccattgata gacccgcgat
      781 cgcacgtcca tatcgagctt cgatcgtgcg atatcgttgc tgcacatcgg gaatcaattc
      841 cttcaaaatg tatgactcgt atttgtcagt ggcaactgtt gagctatcgg tgtaccagcc
      901 atcgtttcct tcaggcgtga ctacaatcat tcggtattgc gaagcgtagt ccgctacgtt
      961 ggtgcgcgtc acccagtctg aatagtgacc ggttagtccg tgcaaaaggt aaagcactgg
     1021 ataacgagtc gtgggtgaaa tgtcgtaatc ggatgggagg attacgttgt aaggaagtgt
     1081 tgcattaacg agcttgcttt gaaaccgaac cgtgtcgacg cgcggcgagg ccatcaaaac
     1141 tg
//
LOCUS       DATCGC010000430         1075 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_172868, whole genome shotgun sequence.
ACCESSION   DATCGC010000430 DATCGC010000000
VERSION     DATCGC010000430.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1075)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1075
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_172868"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1058)
                     /locus_tag="VIJ87_04120"
     CDS             complement(<1..1058)
                     /locus_tag="VIJ87_04120"
                     /inference="COORDINATES: protein motif:HMM:NF018899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="POTRA domain-containing protein"
                     /protein_id="HEY5443653.1"
                     /translation="MQINFNIKEGPTVKVGQIRFVGNEHLSGLYLRRAMKNLKPIGIP
                     YSLVFENLFARTFDASRLDEDTERVRLAYRDKGYANAAIEQPRTQIRDQGGLNWFTFR
                     PNRGKRIDILMPVEEGARYRLGTITFTGNKAVTNVKALRASFILQDGDWFNATLIGKG
                     LEQLKKSYGQLGYINFGAIPKPVYDEQKKTVSLEIDIDEGKPFYVSRIEFEGNTITRD
                     RVIRRELLLDEGQVYNSQLWEYSLLRLNQLEYFEPLKVEQDSEAHQNADAGTVDLLLK
                     VREKGKNSIGLNGGVSGLSGAFLGINYQTNNFLGLGETLSVQGNLGNVSRQFLFGFSQ
                     PYVRNRPLNVGFQIYNNKS"
BASE COUNT          218 a          272 c          332 g          253 t
ORIGIN      
        1 gacttgttgt tgtagatctg gaacccgacg ttgagcgggc gattgcgaac gtaaggctgc
       61 gagaagccga agaggaactg ccggctcacg ttgccaagat tgccttgcac gctgagcgtt
      121 tcgcccagtc cgaggaagtt attggtctgg tagttgatgc ccagaaaggc tccagagagg
      181 ccgctgacac cgccgttgag cccgatggag ttcttgccct tttccctgac cttcaggagc
      241 aagtccacgg tgcctgcgtc ggcgttctga tgggcctctg agtcctgctc gactttgagg
      301 ggctcgaagt attcaagctg gttgaggcgg aggaggctgt actcccacaa ctgagagttg
      361 tagacctggc cttcgtcaag gagcagctcg cggcgaatta cgcgatctcg cgtgatggtg
      421 ttgccctcga actcaatgcg agagacatag aagggcttgc cttcgtcaat gtcgatttcc
      481 agggagaccg tcttcttctg ctcgtcatag acaggcttgg gaatggcgcc aaagttgata
      541 tatcccaact gtccgtagga cttcttgagt tgttcaaggc ccttaccgat gagagtggca
      601 ttaaaccagt cgccatcctg caaaataaac gaggcgcgca gagcctttac gtttgtgact
      661 gccttgttgc cggtgaacgt aatggtgccg agccgatatc gcgcaccctc ctccacgggc
      721 atgaggatgt cgatccgctt gccgcgattg gggcgaaagg tgaaccagtt gagcccaccc
      781 tggtcacgaa tctgggtcct gggttgttca attgcggcgt tggcgtaacc cttatcgcgg
      841 taggcgagtc ttactcgttc ggtgtcttca tcaagcctgg aggcatcgaa ggtgcgggcg
      901 aagaggtttt caaagacgag ggagtacggg atgccaatgg gcttcaggtt cttcatcgcg
      961 cgacgaagat ataggccgct gaggtgctcg ttgcccacga agcgaatctg gccgacctta
     1021 acggttgggc cttccttgat attgaagttg atctgcaccg acgcgggagg aatgg
//
LOCUS       DATCGC010000431         1443 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_272160, whole genome shotgun sequence.
ACCESSION   DATCGC010000431 DATCGC010000000
VERSION     DATCGC010000431.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1443)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1443)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1443
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_272160"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..940
                     /locus_tag="VIJ87_04125"
     CDS             <1..940
                     /locus_tag="VIJ87_04125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443654.1"
                     /translation="PCAEQPLESYEMCCLVTIHLNNIESEDELSRAIKFAYLYGKTVT
                     LLTTPWPKTNAVMLRNRRIGLSMTGVAGFVDHHSLATYRTWADNGYKYVRSLDKTYSE
                     WLGIRESIRMTTEKPEGTVSLVSGATPGVHWSPAGEFFMRAILFGDTDPIVAEAIAAG
                     YTVEDSVYSARTKVIYFPVHAPVGRAEGDVSIFEKIHLAAEAQAYWSDNGVSATISFD
                     AKTEAEQVATVLSMYEGRLKAVSFLPMGNEVYAQQPYTKITEEEYNTYVDKLKPMDFS
                     VLYNNGVDAEVERFCTTDVCELPNLHKEGSRDTITV"
     gene            937..>1443
                     /locus_tag="VIJ87_04130"
     CDS             937..>1443
                     /locus_tag="VIJ87_04130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443655.1"
                     /translation="MSEETPTPDENAVPEEEFVEYGDYDLEDEDAKALVVPVEDALPY
                     PDVEKHDPEAPDTDEADHKFSFVAGASSVRSPEEAIATAREWSRNGTNFGSGHCLVAV
                     RSAYNIGPKYGTASASWWAADHKHRVDGGLAVPRGVPVYWTGGSHGFGHIALSVGGGV
                     CLSTDWKRS"
BASE COUNT          344 a          379 c          389 g          331 t
ORIGIN      
        1 cccgtgcgcc gagcagccac tagagtcata cgaaatgtgc tgcctggtca ccatccacct
       61 taacaacatc gagtcagaag atgaattaag ccgtgctatc aagttcgcat acctctatgg
      121 caagaccgta actctgctta ccacgccttg gccgaagaca aacgctgtga tgcttcgtaa
      181 ccgtcgcatt ggtttgtcta tgaccggcgt tgctggtttc gtagaccatc actctttggc
      241 tacataccgt acctgggcag acaacggcta caagtacgtt aggtctcttg acaagaccta
      301 ttctgagtgg ctgggtattc gtgagtctat ccgtatgacc accgagaagc cagagggcac
      361 ggtatcgctt gtaagcggtg ccactcctgg cgtccactgg tcgccagccg gtgagttctt
      421 tatgcgagca atcctgttcg gtgacaccga cccgattgtt gcagaggcta ttgccgctgg
      481 ctacacggtc gaagacagtg tttattctgc acgaacaaag gtcatctatt tcccggtcca
      541 cgcaccggtc ggacgagccg agggcgacgt aagcatcttt gagaagattc acctggccgc
      601 tgaggctcag gcttactggt ccgataacgg agtaagtgca actatctcat tcgacgccaa
      661 gaccgaggcc gagcaggtcg ccacggtatt gagcatgtat gagggccgtc taaaggctgt
      721 atcattcctg cctatgggta acgaggtata cgcgcagcag ccgtacacca agattactga
      781 ggaagaatac aacacttacg tagacaagtt gaagcctatg gactttagcg tgctgtacaa
      841 caacggcgtg gacgccgagg tcgagcgttt ctgcactacg gacgtatgtg aactaccaaa
      901 cttgcacaaa gaaggttcac gagatacaat taccgtatga gtgaagaaac accaacacca
      961 gacgaaaatg cagttcccga agaggaattc gttgagtatg gagattacga cctagaagac
     1021 gaagacgcga aagcgttagt cgtccctgtt gaagatgcgc tgccttatcc tgatgttgaa
     1081 aaacatgacc ctgaggcacc agacaccgac gaagccgacc ataagtttag tttcgttgct
     1141 ggtgcatctt cggtgcgttc cccggaagag gcaattgcca ctgcccgtga gtggtcgcgc
     1201 aatggaacca attttggctc cggtcactgt ttggtcgccg tacgctccgc gtacaacatc
     1261 ggtcctaagt atggaaccgc ttccgcctca tggtgggcag cagaccataa gcaccgtgta
     1321 gatggtggtc tggccgtacc tcgtggtgtc ccagtttact ggactggtgg cagccacggt
     1381 ttcggtcaca ttgccctttc tgtaggtggc ggcgtatgcc tctctaccga ctggaagcgc
     1441 agt
//
LOCUS       DATCGC010000432         1081 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_172894, whole genome shotgun sequence.
ACCESSION   DATCGC010000432 DATCGC010000000
VERSION     DATCGC010000432.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1081)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1081)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1081
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_172894"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(139..>1081)
                     /locus_tag="VIJ87_04135"
     CDS             complement(139..>1081)
                     /locus_tag="VIJ87_04135"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY5443656.1"
                     /translation="RRGTGGGPVTVFDAHMDTVFQPGLKIKATVKDGRVYAPGIGDDT
                     RNIEALLASIRALDSAKIKTKGDLVFVFTTDEEAGMTGAKFFTKENKGKVDYYVALDG
                     GYEGFTYAGIGINWYRHHFIGPGGHTRSRTPPYSATLPLARAIARIYELKVPTNPSSN
                     LNIGMLGGSEVPNAKAADAWFTVDLRSTDNNVIADLDKKIAAILDEEAKRAGVTLKTD
                     IISSSPAAVLPGNRESHLVKMAEAVHRAMGFDPPIGNAGSNNSSAALLQGITSISTGA
                     GPCNDSHALTENCEIDPLYKGIKKMLLLEIALAGLSN"
BASE COUNT          245 a          287 c          278 g          271 t
ORIGIN      
        1 tgggaccgca ggcgtcctcg cctgcattcg tcgccactaa gaacagctaa ggcagcgttg
       61 gcaggcgagg acgcctgcgg tcccagaaga gcacgacctt gtttctaagg gtactactaa
      121 agagtaccgt gactgcttct agtttgataa tcccgccagc gcaatttcca gcaacaacat
      181 tttcttgatt cctttgtaaa gcggatcgat ttcgcagttc tcagtcaatg cgtgtgagtc
      241 gttacacggt cctgcgccag tcgagattga tgtgatgcct tgcaatagcg cagcgctcga
      301 gttgtttgaa ccggcatttc caatcggagg atcgaagccc atcgctcgat gaaccgcttc
      361 agccattttc acgagatgtg attcacgatt gccgggtaac accgcagcag gcgacgacga
      421 aatgatgtca gttttcagag tcacgccggc tcgttttgct tcctcgtcga gaatggctgc
      481 gatcttctta tcaagatccg caatcacgtt gttgtctgtc gaacgaaggt caactgtaaa
      541 ccacgcatcg gcagccttcg cattcggaac ttcagaacct cccaacatgc cgatattcaa
      601 atttgaagac ggatttgtcg gtactttcaa ttcgtaaata cgagcgatcg cgcgagcgag
      661 aggcagcgtg gctgagtaag gcggggtgcg tgaacgagtg tgaccgcccg gtccaatgaa
      721 gtgatgcctg taccagttga tcccgattcc cgcgtaagtg aatccttcat acccaccatc
      781 aagtgctacg tagtaatcca ccttgccttt gttctccttg gtgaagaact tggctccggt
      841 catcccggct tcttcgtcgg tggtaaacac gaagactaga tcgccctttg ttttgatctt
      901 ggcggaatcg agtgcccgga tacttgccag cagtgcttca atgttcctag tgtcgtcgcc
      961 gataccggga gcgtaaacgc gaccatcttt aacggttgct ttgatcttta agcctggttg
     1021 aaagacagta tccatgtgcg catcaaaaac agtgactgga ccgccgcccg taccacggcg
     1081 a
//
LOCUS       DATCGC010000433         1764 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_272201, whole genome shotgun sequence.
ACCESSION   DATCGC010000433 DATCGC010000000
VERSION     DATCGC010000433.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1764)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1764)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1764
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_272201"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..802
                     /locus_tag="VIJ87_04140"
     CDS             <1..802
                     /locus_tag="VIJ87_04140"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY5443657.1"
                     /translation="FLSQRPIHTVTMKSFIHDNGLVSPLNRGSFYGYRDVNGRLEGVA
                     LVGHATLMETVSDRALQALAKVARECAYTHMIMGEQERVADFWVSYAETGQAPRLACR
                     EWLLELSAPSATDEVVPELKLATEEDLDVVMPIQAQLAFQESGIDPSRVDPLGFRRRC
                     LRRIQQRRTWVLFEGDTLIFKADVISETNDVIYLEGIWVREEARNDGTGRRCMAELSR
                     RLLTKTNSLCLLANELNTRALKFYKKCGFLFRSTYETIFLSNKESFSH"
     gene            875..>1764
                     /locus_tag="VIJ87_04145"
     CDS             875..>1764
                     /locus_tag="VIJ87_04145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443658.1"
                     /translation="MANGSNISRFSIPFLRTITIAGCVALLYSLYSLHLAQLDLRFAA
                     LLGMTIVLSPRIVVPIPRLSSQISVSDTFVFLILLLYGGPAAVLVASTEALFSSLRFS
                     RRPQTVLFNWGCTALSVFITSAFVSFAFGDVVVLPTQPFSAAFLIAICSMALVLYASN
                     SGIVAVGTALKTSEPIWQTWRKHYLWTSVTYFAGACAAAVIAALMHLIGFSALVMTLP
                     IIGIVFLTYRTYLTNVEASAAQADQAEKHVKELSHYIAEQERIQEQFTQLEKLSALGE
                     LASGVAHDFNNTLAGILGRA"
BASE COUNT          395 a          478 c          429 g          462 t
ORIGIN      
        1 cttcctttct cagcgcccca ttcacacggt cacgatgaag agcttcattc acgataacgg
       61 actcgtgagt ccactcaatc gtggcagctt ctatggttac cgtgacgtta acggtcgact
      121 tgaaggtgtc gctcttgtgg gccatgcgac cttgatggaa accgtttctg atcgcgcact
      181 gcaagcgctc gcaaaagttg ctcgtgaatg cgcctacact cacatgatta tgggtgagca
      241 agagcgggtc gcggactttt gggtcagcta cgctgaaact ggtcaggcac ctcgtctcgc
      301 ttgtcgcgaa tggttactcg agttatcagc acccagcgca accgacgaag ttgtacctga
      361 attgaagttg gccactgaag aagatctcga cgtggttatg ccaatccagg ctcaactcgc
      421 gttccaggag agtggtatcg acccatcacg cgttgacccg ttgggcttcc gcagacgttg
      481 cctccgaaga attcagcagc gacgaacctg ggtgcttttt gaaggcgata ctcttatttt
      541 caaggcggac gtcatctccg aaacgaatga cgttatctat ctcgaaggca tttgggttag
      601 agaagaagct cgcaacgacg gtactggcag gcgttgtatg gcggaactgt cgcgcaggct
      661 tttgactaaa acaaactctc tttgtcttct cgcaaatgaa ctcaacactc gcgctctcaa
      721 attctataaa aagtgcggct ttctcttccg ttcgacatac gagacgattt tcctttcgaa
      781 caaggagtca ttctcgcact aagcaaatca aagcagcccc gacccgtctt ggttaaaggc
      841 actcccagct ctcaccttga gcaagactga cgcaatggcc aacggtagta acatcagtag
      901 attctcaatc cccttcctac gaacgattac gatcgcgggt tgtgttgctc ttctctactc
      961 gctgtattcc ctacatctgg cgcagcttga tttgagattt gctgcgttac tgggaatgac
     1021 aatcgtgtta agccccagaa ttgttgtccc catccctcgt ctgagttcac aaatatccgt
     1081 ttccgacacc ttcgttttcc tgatcctact cctttacggt gggccagctg cggtgcttgt
     1141 tgcctcaacg gaggcattgt tttcatcact cagattcagc cggcgtccac agaccgtact
     1201 ctttaactgg ggctgtacgg ctctctcggt attcattacc agcgcgtttg tgagttttgc
     1261 gtttggcgat gtggtcgtgc tgccaacgca accattttca gcggccttcc tgattgcaat
     1321 ctgctcaatg gcgcttgttc tttatgcttc gaactcagga atcgtagcag tcggcacagc
     1381 gttaaagacg agtgaaccaa tctggcagac ctggcgcaaa cactatctct ggacctcggt
     1441 aacctatttc gcaggcgctt gcgccgctgc cgtcatcgct gcattaatgc acctgatcgg
     1501 cttttcagca ttggttatga cgttgccgat aattggcatt gttttcctaa cttaccgcac
     1561 gtatctaaca aacgtcgaag cttcagccgc gcaagcggat caggcggaga aacacgttaa
     1621 ggaactctca cactacatcg cggagcagga acgtattcaa gagcagttca cgcaattgga
     1681 aaagttgtcc gccctgggtg aactggcgtc tggagtcgct catgacttca acaacacctt
     1741 ggcaggaatt cttggccgcg cgca
//
LOCUS       DATCGC010000434         1778 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_239598, whole genome shotgun sequence.
ACCESSION   DATCGC010000434 DATCGC010000000
VERSION     DATCGC010000434.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1778)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1778)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1778
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_239598"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(116..538)
                     /locus_tag="VIJ87_04150"
     CDS             complement(116..538)
                     /locus_tag="VIJ87_04150"
                     /inference="COORDINATES: protein motif:HMM:TIGR02246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SgcJ/EcaC family oxidoreductase"
                     /protein_id="HEY5443659.1"
                     /translation="MQTRQSKVVDDRNDDQAIRELVDRWLIASERGDLPTILNLLADD
                     VVFMVPNKEPFGREAFSQSFEQTKSAKMKTKSDIQEIKIIGDWAWMRNFLRVTLTEAN
                     GQSSTRSGYVLTILNRRPDGGWVIARDANLLTPEGPGL"
     gene            complement(560..997)
                     /locus_tag="VIJ87_04155"
     CDS             complement(560..997)
                     /locus_tag="VIJ87_04155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443660.1"
                     /translation="MPEKETLERAQQDKAEGKAPSTQAGEFVREEIDHVREGKHGARS
                     TKQAIAIGLAKARRAGVDLAPPTKGSKKLREQAARDLQKGKKKSAKKSAKRSQAALQV
                     LKREGRSAGSKLALSRHARSAAKKRTAAARSTAAKKAARTRKK"
     gene            complement(1063..1740)
                     /locus_tag="VIJ87_04160"
     CDS             complement(1063..1740)
                     /locus_tag="VIJ87_04160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443661.1"
                     /translation="MRERPRVIAISGFSSNVGKTTLVCNLLGQLPGWEAIKLTRGHYR
                     SCGRDPAGCCVSDLLRDEPVVRSGREANYQLGKDTARFWDAGASNVHWVIVKDGQVAQ
                     GINEALHRVEAEGVIVEGNSFLEYVKADLAIMCARSEGGTIKSSARRALAHSDLLYLS
                     FMDGTPADAKQQFAGFSAGLNVPLDLHSLPIITDGDLKPLLARIHREELVRNVESVQL
                     QIPRCSS"
BASE COUNT          384 a          509 c          406 g          479 t
ORIGIN      
        1 cgcaactcaa gtgccgatgg gattgcttaa cccaaatttg gggaatttag cgagtgacaa
       61 caccgcctag agagttggga aacgaacagc tgtttcatgt ttcaccgcca ggttgtcaga
      121 ggcccggccc ttccggtgtc aaaagatttg catcgcgcgc gatcacccaa cctccatcag
      181 gacgtctgtt caagatcgta agcacatagc ctgagcgagt agacgactga ccgttcgctt
      241 cagttaaagt cactcgcaga aaattgcgca tccaggccca gtcgccgatg atcttgattt
      301 cctgaatatc gctctttgtt ttcattttcg cgctcttcgt ctgttcgaaa ctctgagaga
      361 acgcttccct gccgaatggt tccttattcg ggaccataaa aaccacatca tcggcgagga
      421 gattcagtat cgtagggaga tcgcctcttt cgcttgctat tagccacctg tcaaccaact
      481 cacgaatggc ctggtcgtcg ttcctgtcgt ctactacttt tgattgcctc gtttgcataa
      541 ttgcatctcc ttttgatctt cacttctttc gagtgcgcgc cgcctttttc gcagcggtcg
      601 agcgtgctgc ggctgttcgc ttctttgctg cgctacgggc atgtcgtgag agagctagct
      661 tagaaccagc gcttcgccct tcgcgtttca gaacctgcaa agccgcttgc gaacgtttag
      721 ccgatttctt tgcgctcttc tttttccctt tttggagatc ccgagctgcc tgttcgcgta
      781 acttcttcga tcctttcgtg ggcggcgcca aatccactcc ggcgcgtcgc gctttcgcaa
      841 gcccaatggc tatcgcctgt ttcgttgaac gagctccatg tttgccttca cgcacatggt
      901 caatttcttc gcgcacaaac tctccggcct gcgtgctcgg agcctttcct tctgccttgt
      961 cttgctgcgc gcgttctaaa gtttcctttt ccggcatgca tttctcctcc tccagctaat
     1021 gaaattcact ttctcgcgta gggttttgac gattcatgac tactaagaag aacatcttgg
     1081 aatttgtagt tgcacagact caacgtttcg caccagctct tcgcgatgga ttcgtgccag
     1141 taacggcttc agatccccat cagtgataat cggcaaactg tgcaaatcca aaggaacgtt
     1201 aagtccagcg ctgaaacccg cgaattgttg cttggcatct gcaggcgtgc catccatgaa
     1261 agagagatag agcagatcgc tgtgagccaa agccctgcgc gccgaagact ttattgttcc
     1321 gccttctgag cgtgcacaca taatcgctaa gtcggccttg acgtattcaa gaaagctgtt
     1381 tccttcgacg atcacacctt ctgcttcaac gcggtggagt gcttcattaa tgccttgagc
     1441 aacctgacca tctttcacga ttacccaatg cacattcgag gccccggcat cccagaagcg
     1501 ggcagtatct ttacctaatt gataattagc ttcgcgtcct gagcgaacca ccggttcatc
     1561 acgaagtaaa tcgctgacac agcagcccgc tggatctctg ccgcaagaac ggtaatgacc
     1621 gcgcgttagc ttgatcgctt cccagccggg caactggccc agcagattac acaccaacgt
     1681 cgttttgcca acgttcgatg aaaagccgct gatagcaata accctgggtc tctctctcat
     1741 gaatggttcc ctaacaacaa gcaatcgcta gaaagtaa
//
LOCUS       DATCGC010000435         1090 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_439434, whole genome shotgun sequence.
ACCESSION   DATCGC010000435 DATCGC010000000
VERSION     DATCGC010000435.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1090)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1090)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1090
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_439434"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..224)
                     /locus_tag="VIJ87_04165"
     CDS             complement(<1..224)
                     /locus_tag="VIJ87_04165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443662.1"
                     /translation="MTKRNCFRLLAIVVATVISLQTAQVSFAKKQKKTKRTKRTAAPL
                     IWAPSQFQTIPTISNQATLTTTPDVRRNQSA"
     gene            complement(479..>1090)
                     /locus_tag="VIJ87_04170"
     CDS             complement(479..>1090)
                     /locus_tag="VIJ87_04170"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY5443663.1"
                     /translation="PRPIIGYVGGLHRFVDYDLIAALAKSRPSWSWVFLGAHQVSLER
                     LDGLPNIHLLGQQRHDQLAKHMAFFDVCLVPYINSPEISTVVPTKINEYLAAGKPVVA
                     TNLPTVSEFNAKHQVLTIAEPTARDFLQAIESQLSRAHDPQLISTRRRVAMLSDWQLR
                     LEQMSELIEQKLSPLPAGPVLEGTLKSTRNLQHDSARPRTLNG"
BASE COUNT          261 a          248 c          290 g          291 t
ORIGIN      
        1 gccgactgat tgcgtctgac gtcgggtgtt gtggtgagcg ttgcttggtt ggaaattgtc
       61 gggattgtct ggaactgaga tggggcccaa ataaggggcg ctgctgtacg cttggtccgt
      121 ttggttttct tttgcttttt agcaaaactt acctgagcag tttgaagcga aataacggtt
      181 gcgacaacaa ttgccagcaa cctaaagcag tttctcttgg tcactttggg cctccttcaa
      241 aggatccgag ggaatcggtc cacttgatca gatggaacac aatttagagt ttttggtttg
      301 acgccaccgc aagaaacgcg gcacctgttt cagcgtgttt cgttaccatg ctcaatggtc
      361 gaatcagact gacaatatat ctctattgat gttggacctt agggtggggg tttgcacgac
      421 ggttttctaa catagccctg caaatcagtc aacaaaatcg ttcctcgcca agaccgcatt
      481 acccattaag tgtacggggc cgggccgaat catgttgaag gtttcgagta cttttcaatg
      541 tgccctctag aactggacca gcgggcaaag ggctcagctt ctgctcaata agttcactca
      601 tttgctcgag acgtagttgc caatctgaca acatggctac ccggcgcctg gtagatatta
      661 attgtggatc gtgggctctc gaaagttgac tttctatagc ttgcaggaag tcgcgcgctg
      721 tcggttctgc aatcgttagg acctggtgtt tggcgttgaa ttccgacaca gtcggcaagt
      781 tagtagcgac gactggctta cccgctgcca ggtactcatt aatcttggtt gggacgaccg
      841 tgcttatctc cgggctgttg atataaggaa ccaggcaaac atcaaaaaag gccatgtgtt
      901 tagcaagttg gtcgtgacgc tgttggccca agaggtgaat gtttggtaaa ccgtcaagcc
      961 tttcaagcga aacttgatga gctcccagga acacccatga ccaggaagga cgagactttg
     1021 ccagggctgc aattagatcg taatcaacga aacgatgaag tccaccgacg tatccaataa
     1081 ttggcctcgg
//
LOCUS       DATCGC010000436         1673 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_306848, whole genome shotgun sequence.
ACCESSION   DATCGC010000436 DATCGC010000000
VERSION     DATCGC010000436.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1673)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1673)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1673
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_306848"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..680)
                     /locus_tag="VIJ87_04175"
     CDS             complement(<1..680)
                     /locus_tag="VIJ87_04175"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY5443664.1"
                     /translation="MNSYRDALFDSYNATHVAYLDANDQSKLEYFREYARLNYLPLLA
                     LLNRDTAQILEVACSKGYLLAALQSFGFKRLSGVDLSPVDVETARQLASSATVSCVDA
                     FDYLDQHSGEFDVVIMKAALEHTEKDRVLPLLEKISSGLKPDGMAIIDVPNMDWILGQ
                     HERYMDFTHEVGFTRESLAQVMRQVFENVNVQKARLSMPSGLKSAIEKTLRRIVVLWM
                     GLILRILG"
     gene            complement(721..957)
                     /locus_tag="VIJ87_04180"
     CDS             complement(721..957)
                     /locus_tag="VIJ87_04180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443665.1"
                     /translation="MSRSKKKTPIQGFSSAVSEKEDKRQYNRRYRRACRQVLHATKDG
                     DRLPLLRELSNPWCMAKDGKRWFDPKVNPKEMRK"
     gene            complement(990..1139)
                     /locus_tag="VIJ87_04185"
     CDS             complement(990..1139)
                     /locus_tag="VIJ87_04185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443666.1"
                     /translation="MLSPFDLVRTRFTRNTWLRADYDPSDLGQRELVVEQQDHHDESS
                     PKEKF"
BASE COUNT          397 a          461 c          396 g          419 t
ORIGIN      
        1 tcgccgagaa ttctcaagat caagcccatc caaagaacga ctatccttcg cagggttttc
       61 tcgattgccg acttcagtcc cgaaggcatc gataatctag ctttctgtac gttgacgttc
      121 tcaaacactt gcctcatcac ctgcgccagg ctctctcgcg taaagcctac ttcgtgagtg
      181 aagtccatgt atcgctcgtg ctggcccagt atccaatcca tgtttggcac gtcgatgatt
      241 gccatgccat caggcttgag accggaactg atcttttcga gcaatggaag cactcgatct
      301 ttttccgtat gctccaacgc tgccttcata atcacaacgt cgaactcgcc gctgtgctga
      361 tcgagataat caaaagcgtc aacgcacgac acggtggcgg acgaagcaag ttgacgggct
      421 gtttcaacat caaccggcga aagatccacg ccactgagtc tcttaaaccc aaacgactgc
      481 aacgcagcaa gcaggtaacc cttgctgcaa gccacttcga gaatttgggc cgtgtcgcgg
      541 ttgagaaggg ctagcagcgg caggtagttg agtcgggcgt actcgcgaaa gtattcgagc
      601 ttcgattgat cgttcgcatc aagatacgcg acgtgagtag cgttgtaaga atcgaaaagc
      661 gcgtcgcggt agctgttcat ttgggaaagc ggaccgacta aataaggacg actcctcact
      721 tcatttgcgc atttcctttg ggttcacttt tggatcgaac cagcgcttgc cgtctttggc
      781 catgcaccac ggattactaa gctctcgcaa gaggggcaat cgatctccgt ctttcgtagc
      841 gtgaagaact tgtcggcaag ctctgcgata gcgacggtta tattgtcgtt tgtcttcctt
      901 ttcgctaacc gccgaactga agccttggat aggcgtcttc tttttagatc tactcatttc
      961 gttaggaacc tccctaacga aacggcaaat taaaatttct cctttggcga agattcatca
     1021 tgatggtcct gctgctcaac caccaattca cgttggccca aatcgctcgg atcataatcc
     1081 gctctgagcc aggtatttcg tgtgaatcgc gtgcgaacga ggtcgaacgg gctgagcatc
     1141 ttactcgatc accttgaaag tcggcgacac cgggagtgtc agaagttgat gcgaatgagc
     1201 gtattcaggt ccgatccgag cattcggtca acggccatgc tactctctgg acgtaatgtt
     1261 gttggacacc agactcaatt caaagtctgc gcgcataata ctttgtgtac tgtgcttgct
     1321 gtgcgctggc caaatcgtca gtgcatgccc gcggtctgct acagcagcta acacccagtg
     1381 cgagtcttct caagccggtg ccgctaagtt acctactcat aagccacctc gctcgaatgt
     1441 tccacacacc gttgaagttg cctcagcccc aaccttaaag caggtatcgt gggagcccca
     1501 gcttgtacat cagcttgccg tcgaaattgt tcaggctttt caactagaca acctcacaga
     1561 gcaacggact gaaaagcttc gcccaccgtc aagttactcc ccagtcattg tttccgattc
     1621 atccggtcgt tctccaccga gtcaacacta aatacaaacc atcgcagtgg tga
//
LOCUS       DATCGC010000437         1122 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_73737, whole genome shotgun sequence.
ACCESSION   DATCGC010000437 DATCGC010000000
VERSION     DATCGC010000437.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1122
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73737"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..747
                     /locus_tag="VIJ87_04190"
     CDS             <1..747
                     /locus_tag="VIJ87_04190"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY5443667.1"
                     /translation="VLGGDIKDKFFPNGDPIGKTLKVRGIPMRVVGVEEKRGAFFGDS
                     TDRHIYIPVTTHLQIFGRNGLQIHGKSKTRDGLLPTIEDARIQMRIKHRLNGNEEDDF
                     GIVNVQELTNQIDEFTSGIAKVVIPITLITLLVGGIVVMNIMLVSVTERTFEVGLRKA
                     VGATKRQIMVQFLIESGLLCALGGVLGLGMSWGVCLLITTLAGITMTITITYIILAIG
                     VSTIIGMLAGIYPAFKGARLDPIVALTHAM"
     gene            763..>1122
                     /locus_tag="VIJ87_04195"
     CDS             763..>1122
                     /locus_tag="VIJ87_04195"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5443668.1"
                     /translation="MSFFSKIRSKLPKSKLRETLGMAFDSIRGHKFRSFLTVLGIVIG
                     VFTAIVIASLLTGMRQSIVSIIEDYGTSNIYAFHLSTGPRTGEDRSERLRKPFVVADA
                     EAIKLAPAVEAVAVVAPN"
BASE COUNT          269 a          275 c          299 g          279 t
ORIGIN      
        1 gtgcttggag gcgatattaa ggacaagttc tttccgaatg gcgatcctat cgggaagacg
       61 ctgaaggttc gcgggattcc gatgcgagta gtcggcgtgg aagagaagcg tggcgctttt
      121 tttggagact caactgatcg acacatttac ataccggtca ctacgcatct tcagatcttt
      181 ggtcgaaacg gattacagat tcacggcaag agcaaaactc gtgatggact cctacccacc
      241 attgaagatg cacgtatcca gatgaggatc aagcatcgac tcaatggaaa cgaagaagac
      301 gattttggga tcgtaaatgt ccaggagcta actaaccaga tagatgagtt caccagcggc
      361 attgccaagg ttgttattcc gatcactttg atcacgctgt tggtgggcgg catcgtggtg
      421 atgaacatca tgttggttag tgttaccgaa cgcaccttcg aagtcggatt gcgaaaagca
      481 gtcggcgcaa cgaagcgtca gatcatggtc cagtttttga tcgaatccgg tttgctttgt
      541 gcgctcggcg gcgtgctggg cttagggatg tcatggggtg tttgcctttt gatcacgaca
      601 ctcgccggca tcacgatgac aataaccatc acctacataa ttctcgcgat aggggtctca
      661 acaatcatcg gaatgctggc cggaatttat ccagcattca agggggcgcg tctcgatccg
      721 attgttgccc ttacacacgc aatgtaagag agccaggccg ccatgtcgtt ttttagcaaa
      781 atccgatcga aactaccgaa gagtaaactg cgcgaaaccc tgggcatggc gttcgacagt
      841 atccgtggtc acaagtttcg cagcttcctt actgtgcttg gtatcgtgat tggagtcttt
      901 acggcaatcg ttattgcctc actgctcacc ggcatgcgtc agagcatcgt ctcgatcatt
      961 gaagattacg gcaccagcaa catctacgcc ttccaccttt ccaccggacc gcgcactggt
     1021 gaggatcgat ctgaacgttt gcgaaagcct tttgtggtag ccgatgcaga agcaatcaag
     1081 ctggctcctg ccgttgaagc tgtcgccgtt gtcgcgccga ac
//
LOCUS       DATCGC010000438         1296 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_139343, whole genome shotgun sequence.
ACCESSION   DATCGC010000438 DATCGC010000000
VERSION     DATCGC010000438.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1296
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_139343"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..377)
                     /locus_tag="VIJ87_04200"
     CDS             complement(<1..377)
                     /locus_tag="VIJ87_04200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443669.1"
                     /translation="MKIASFLLTFVSLMLGSMLNCIVCHAQTDAKKQVEETTKNTDFA
                     VGRSPEGIIFDGTNIWVANGQADTLTKLSATDGTTLGTFPVGNRPSALAFDGQNIWVS
                     NRFSNNVMKLRASDGMLLETIKVG"
     gene            complement(559..1275)
                     /locus_tag="VIJ87_04205"
     CDS             complement(559..1275)
                     /locus_tag="VIJ87_04205"
                     /inference="COORDINATES: protein motif:HMM:NF014667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEY5443670.1"
                     /translation="MSELSRRKMLAALAVTPLAAGVVARTASSDDKVLKTGLSTREKL
                     AKRYFPNFELTTHEGKKVRFYDDLIKDKIVVINFMYVKCEGICMPVTMNLKRVQKLLG
                     DRVGRDIFMYSITLKPQEDSPGVLKHYVDMHNIKPGWTFLTGKPDEINTLRRSLGFKD
                     AKAKLDQDLTNHTGMVKYGNEARQWWAMFPGEANAPWIVECIGWMDGPNAKPIQANHS
                     SSESEMPKHKHAKSRTKGGP"
BASE COUNT          304 a          352 c          282 g          358 t
ORIGIN      
        1 cctaccttga tcgtctcgag cagcattccg tcacttgctc ggagcttcat cacgttgttg
       61 ctgaatctgt tggaaaccca aatgttctgc ccgtcaaacg caagagccga gggacgatta
      121 ccaaccggaa aggtaccgag agttgttccg tctgtcgcac tgagtttggt caacgtatct
      181 gcttgaccat tagctaccca gatattagtc ccatcaaaaa tgataccctc tggacttctc
      241 cccacagcaa aatccgtgtt cttagttgtt tcctctacct gcttcttggc atccgtctga
      301 gcatggcaga cgatacagtt gagcatcgaa cccagcatga gtgagacaaa ggtcaaaagg
      361 aaacttgcga ttttcatttg cgataacctc aaattagaac tgaaagattt ctcaatagtt
      421 atctatgtgc ggaacttgac gcggcaattc ctgcgggtga agtcgggaag agcgcaacct
      481 acttcagcgc aactcttccc gacaggtttc aaaggcacct aaaagagtaa atcgattcta
      541 gctctaaagt ccgaatcgtt acggcccacc ctttgttcgc gactttgcat gtttgtgctt
      601 cggcatttca gactcactcg agctgtgatt tgcctggatc ggtttcgcat tcgggccatc
      661 catccacccg atacactcga caatccatgg agcatttgcc tcgcccggaa acatggccca
      721 ccattgacgt gcttcattcc catacttgac catacctgtg tgattggtca gatcctgatc
      781 aagcttcgct ttcgcatcct taaagccgag gctccgtcga agcgtattga tctcgtcggg
      841 ttttccagtc aaaaaggtcc aaccgggttt gatgttgtgc atgtcgacgt agtgcttcaa
      901 cacaccagga ctatcttcct gtggtttaag cgtgatggaa tacatgaaga tgtcgcgccc
      961 tacccgatca cccaataact tctgcactct cttgaggttc atggtgacgg gcatacagat
     1021 accttcacac ttcacgtaca tgaagttgat aaccacaatc ttgtctttga tgagatcatc
     1081 gtagaaacgg actttctttc cttcgtgtgt agttagctcg aagtttggaa aataacgctt
     1141 cgcgagtttt tcacgcgtgg agagtccggt cttcaagacc ttatcatccg aactggctgt
     1201 ccgcgccacc accccagctg cgaggggcgt taccgccaac gccgccagca tttttcttct
     1261 acttagctct gacatctctt catctccttt ctcgat
//
LOCUS       DATCGC010000439         2946 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_272340, whole genome shotgun sequence.
ACCESSION   DATCGC010000439 DATCGC010000000
VERSION     DATCGC010000439.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2946)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2946)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2946
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_272340"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..713)
                     /locus_tag="VIJ87_04210"
     CDS             complement(<1..713)
                     /locus_tag="VIJ87_04210"
                     /inference="COORDINATES: protein motif:HMM:NF013134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein subunit M"
                     /protein_id="HEY5443671.1"
                     /translation="MAVFLSQQMRGFIPSYTLTTPASLADALNLLASEPGVWKPFAGG
                     TDLMVLLESGNLSHRSYINIWQFAELREIEVTDDHVTLGALTTYTDVQAHPILREEFP
                     MLCQAASETGGLAIQNRGTIGGNIVNASPAADSPPALLAYDAEVELTSASGSRWLAYQ
                     GFHTGYKQMQIRSDELLTKVRLPRKPVNRYHYYRKVGTRKAQAISKVCLAATGLKNND
                     VITDLRIAFGSVAPIVVRCT"
     gene            complement(810..1277)
                     /locus_tag="VIJ87_04215"
     CDS             complement(810..1277)
                     /locus_tag="VIJ87_04215"
                     /inference="COORDINATES: protein motif:HMM:NF013923.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEY5443672.1"
                     /translation="MSDKTPIHFTVNGESRSVETFPMSRLLDVLREELQLTGTKEGCG
                     EGECGACTVVLDGRIVNSCLVPVAQASGSSITTIEGVATEDKLHDVQQAFIDHGGAQC
                     GICTPGMILAAVDLLERNPKPNEVDIRTGLAGNLCRCTGYMKIFESVVRACQK"
     gene            1319..1540
                     /locus_tag="VIJ87_04220"
     CDS             1319..1540
                     /locus_tag="VIJ87_04220"
                     /inference="COORDINATES: protein motif:HMM:NF016167.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF433 domain-containing protein"
                     /protein_id="HEY5443673.1"
                     /translation="MVDWSKCPAAERDEERVSGAWVFRGTRVPISALIENLESGASVD
                     EFVEWFPGVSIEQVVEVLTFAEQHSLTEA"
     gene            1559..1876
                     /locus_tag="VIJ87_04225"
     CDS             1559..1876
                     /locus_tag="VIJ87_04225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443674.1"
                     /translation="MKILFDQGTPVPLRHYLQSHTVTTTFELGWSTLKNGELLDAAEA
                     IFDCFITTDQNLRYQQNLSDRKLAIVVLMSTSWPRLRESIPKIGEVVDEVRAGEYREI
                     IIP"
     gene            complement(1866..>2946)
                     /locus_tag="VIJ87_04230"
     CDS             complement(1866..>2946)
                     /locus_tag="VIJ87_04230"
                     /inference="COORDINATES: protein motif:HMM:NF042649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEY5443675.1"
                     /translation="ARENQIALATKDQSLVQQLVDVGQISESEAETHMFRNVIQRALG
                     AHPPKTKRGIGFASFMHGAGFTGSGEVYLQSVVGAEATAEGKVQVLAASTEIGQGTNT
                     IFSQIASEALGLDFDLIEIVQPDTNKVPNSGPTVASRTSMVVGKLVESAVLGLKQTLI
                     GSGLLSNGYNQSDWVKGCAEYIAKFGPLKTSATYQPPPNVRWDDEKYQGDAYGAFAWA
                     VYVAEVSYDELTYEARVEDFVALQEIGRVLNPVLAAGQIEGGVAQAIGFTLFEHVVWK
                     DGRMANNQMTNYIIPTPADIPPIRVFFEENPYAYGPGGAKGIGELPMDGAAPAILNAI
                     ENATGVSFNHVPLMPEMLMESLFTE"
BASE COUNT          663 a          757 c          782 g          744 t
ORIGIN      
        1 gtgcagcgga cgactattgg tgcaacgcta ccgaaagcaa tcctcaaatc agtgatcaca
       61 tcgttattct ttagtccggt tgcggccagg cacactttag aaattgcctg cgcctttcgc
      121 gttccaacct tgcggtagta atggtaacgg ttaacgggtt ttcgtgggag acgaactttg
      181 gtcagcagtt catccgaccg gatctgcatc tgtttgtatc cggtgtgaaa cccctggtaa
      241 gcgagccacc gagagccgga ggctgaagta agttcaactt cagcatcgta tgccagcaaa
      301 gcaggaggcg aatccgcggc gggggaagcg ttcactatgt tgccgccaat cgtgccgcga
      361 ttttgaatag caagcccacc ggtttcactg gcggcctgac aaagcatcgg aaactcctcg
      421 cgcaggatcg gatgggcttg tacatcagtg taggttgtaa gagcgcccag ggtgacgtga
      481 tcgtcagtga cttcgatttc gcggagttca gcgaattgcc aaatgtttat gtagctgcga
      541 tgactcagat ttcctgactc gagcaggacc atcagatcgg tgccgccggc aaagggtttc
      601 caaacgccag gttcacttgc aagcaggttg agagcgtctg cgagtgacgc tggggtcgtt
      661 aacgtgtaac tggggatgaa gcctcgcatt tgttgactta gaaatacggc cacagatcaa
      721 gactgatcag acagataggt ttcgattgag ttagggtcag cgtgcttctt tctgaatctg
      781 ttcagttggt ttgtagcttc ctgatgtcgt cacttttgac aagcacgaac gaccgattca
      841 aatatcttca tatagcctgt acaacggcaa aggttcccag ccaacccagt ccgaatatcg
      901 acttcgtttg gctttgggtt ccgctctagc agatccactg cagccaggat cattccggga
      961 gtacaaatgc cacactgagc gccgccgtga tcgatgaacg cttgctgaac gtcgtgaagt
     1021 ttgtcttcag tcgctacacc ttcgatcgtc gttatgctgc ttccgctcgc ttgtgcaact
     1081 ggtaccaaac aactattcac aatccgacca tcaaggacca cagtacacgc gccacactca
     1141 ccctcgccgc agccttcctt tgttccggtg agttgaagtt cttcacgtag tacgtcgagg
     1201 agccgcgaca tgggaaacgt ctcgacgctt cgtgactcgc cgttgaccgt gaagtgtatg
     1261 ggcgttttgt cagacatagt tgcttgactg cggttggggc caagcataac atgtagccat
     1321 ggttgattgg agcaaatgcc cggcggctga gcgggatgaa gaaagagtca gcggagcttg
     1381 ggttttccgt ggtactcgag tgccgatctc ggctctgatt gagaaccttg aatcgggcgc
     1441 ttccgttgat gagtttgttg aatggtttcc gggtgtttca atcgagcagg ttgttgaagt
     1501 cctcacgttc gcagagcaac atagtttgac cgaagcataa ccgcttcctc acgatccaat
     1561 gaagattctt tttgatcagg gtacgcctgt gcccctacgt cactacctac agtcgcacac
     1621 agtcacaaca acttttgaat tgggctggtc aaccctgaag aatggtgaat tactcgatgc
     1681 ggcagaggca attttcgact gttttataac gaccgatcag aatcttcggt atcaacagaa
     1741 cctgagtgat cggaagttgg ctattgtggt acttatgagc acaagctggc cccgtttaag
     1801 agaatcgatt ccgaagatcg gtgaagttgt ggatgaggtg agggctggcg aatatcggga
     1861 aatcatcatt ccgtaaacag actttccatc aacatctccg gcattagggg cacatgattg
     1921 aaactcacgc cagttgcatt ctcgatcgca ttgagaatcg ctggggcggc tccatccatc
     1981 ggtaactcac cgattccctt tgctccgccg gggccatacg cgtatggatt ctcttcaaag
     2041 aaaaccctga tcggcggaat gtcggccggt gttggaatga tgtagttggt catctggttg
     2101 ttagccattc gaccgtcttt ccaaacgaca tgttcgaaga gagtgaaccc gatcgcttgc
     2161 gctacgccgc cttcaatctg tcccgcggcc aatactggat taagcactcg accaatttcc
     2221 tgtagcgcga caaagtcttc cacgcgcgct tcgtaggtga gttcatcata ggagacttct
     2281 gcgacataga ctgcccaggc aaaagctccg taagcgtcgc cttgatattt ctcgtcgtcc
     2341 cagcggacgt ttggtggcgg ttgatacgtg gctgaagttt tcaagggacc aaacttagcg
     2401 atgtattcgg cgcagccttt gacccagtcg gactgattgt agccattact tagtaagcca
     2461 ctcccaatca acgtttgctt caaacccaac actgctgact caacgagttt tccaacgacc
     2521 atcgaagttc tcgatgcgac ggttggtccg ctgtttggga ctttgtttgt atccggctga
     2581 acgatttcga tcagatcgaa atccaggcca agtgcttcag aagcgatctg cgaaaagatt
     2641 gtgttggtgc cctgtccaat ctccgtgctc gccgccagca cctggacctt tccttcagcg
     2701 gtggcttcag caccaacaac cgactgaagg taaacctcgc ctgacccggt gaagcctgcg
     2761 ccgtgcatga acgacgcgaa gccgatgcct cgcttcgttt ttggcggatg cgcacccagc
     2821 gcccgttgga tgacgttgcg aaacatgtgg gtctcagctt cgctctcact gatctggccc
     2881 acgtcgacca gttgttgcac gagtgactgg tctttggtag cgagagcgat ctgattttca
     2941 cgagca
//
LOCUS       DATCGC010000440         1215 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_372315, whole genome shotgun sequence.
ACCESSION   DATCGC010000440 DATCGC010000000
VERSION     DATCGC010000440.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1215)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1215)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1215
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_372315"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..443)
                     /locus_tag="VIJ87_04235"
     CDS             complement(<1..443)
                     /locus_tag="VIJ87_04235"
                     /inference="COORDINATES: protein motif:HMM:NF024842.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD/NAD(P)-binding protein"
                     /protein_id="HEY5443676.1"
                     /translation="MSYDVVVVGGGVGGLTVAALLSARGFNVCLLERQSQVGGCIGRI
                     GFGGYDFEPGMGLHTSWGPGEIYERVFSELPVEAPETRLIDSDYLVRFENSQDITLRK
                     NDGEFFDEVRKAFPECSESAVEFYKLVSDLSQKWKSDASEQRHGF"
     gene            complement(448..>1215)
                     /locus_tag="VIJ87_04240"
     CDS             complement(448..>1215)
                     /locus_tag="VIJ87_04240"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II CAAX endopeptidase family protein"
                     /protein_id="HEY5443677.1"
                     /translation="WIGSVVLLVLVPLLAVIPYFIYLAATSEVPTAQALTQDKIFLLI
                     SILAVIPAHALTLLGIWLIITKWGRAPFWKTLKFSWPPNVLPWRGFAISFGIAVMLLG
                     FGGLITSLLGGQKTDLDVLIESSFAARLATAFLALATAPLVEEVIYRGMLYPAIQRLL
                     GMSWAIVVVSVMFAGVHVLQYKNNIGVIVVITILSITLTVIRAWTDRLLPSVVIHTIF
                     NGLQSLYLVLQPFIEKPEKVQPTPALIQLFHTIQHFF"
BASE COUNT          338 a          317 c          300 g          260 t
ORIGIN      
        1 aagaatccgt gcctttgttc agaagcatca ctcttccatt tctgacttaa gtctgagacg
       61 agtttgtaga actcaaccgc tgactcggag cattccggaa acgctttgcg cacctcatca
      121 aagaactcgc cgtcgttttt cctgagagtt atgtcctggc tgttttcaaa tctgacgaga
      181 tagtcggagt caatcaacct ggtttcggga gcttccacgg gcagctctga gaagacccgc
      241 tcgtaaatct ctccgggccc ccacgaagta tgcaggccca tacccggttc gaagtcatat
      301 ccaccaaatc caatgcgccc gatgcagccg ccgacttgtg attgtcgttc aagcaggcac
      361 acgttgaacc cgcgggcgga cagtaacgcg gcaacggtga gtccgccaac gccgccgcca
      421 actacgacaa catcgtatga catagactca gaagaaatgc tgaatggtat ggaagagttg
      481 gattaaggcc ggagttggct gtaccttttc gggcttttcg ataaatggct gaaggactaa
      541 atagagcgat tgcagcccat tgaagatcgt gtgaataaca accgagggca gcaagcgatc
      601 agtccaggcc cgaatcactg tcagggtaat actgagaatg gtgataacga ctattacgcc
      661 gatattgttc ttgtactgaa ggacatgaac acccgcgaac atcaccgata cgacaacaat
      721 tgcccagctc attcccagga gtcgttgaat tgccggatac aacattccac gatagatgac
      781 ttcctcaacc agtggagctg tggcaagtgc caggaatgct gtcgccagtc gtgcggcaaa
      841 cgaactttcg atcaagacat cgaggtcggt cttttgaccg cccagcaacg atgttatcaa
      901 tccaccgaaa cccaaaagca ttaccgcgat tccaaaactg atcgcgaagc cccgccacgg
      961 caagacattt ggcggccagg aaaacttcaa cgttttccag aagggcgctc ttccccattt
     1021 agtgattatt aaccatatgc caagcagcgt gagggcgtga gccggaatca ctgcaaggat
     1081 tgagatcaaa agaaagatct tatcctgagt aagtgcctgc gctgttggta cctcggaagt
     1141 cgcagcgaga taaataaaat agggaatcac tgccaaaagc ggcacgagaa ctaagaggac
     1201 aacgctgcca atcca
//
LOCUS       DATCGC010000441         1045 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_405539, whole genome shotgun sequence.
ACCESSION   DATCGC010000441 DATCGC010000000
VERSION     DATCGC010000441.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1045)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1045)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1045
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_405539"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(28..285)
                     /locus_tag="VIJ87_04245"
     CDS             complement(28..285)
                     /locus_tag="VIJ87_04245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443678.1"
                     /translation="MLSIVKVRLPAIGFKLADCNVIEDLCWANEAALRTSNAEMHRRS
                     FVFIDVFFLSDMLQLVVVSLQKLLLLHNDKTDAYRTFLTAF"
     gene            284..>1045
                     /locus_tag="VIJ87_04250"
     CDS             284..>1045
                     /locus_tag="VIJ87_04250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443679.1"
                     /translation="MFFETANGRVEIPVLNLDASVGSIDVTAGGHKITVSFKPQGRDF
                     KVTLKAQPDSDITKWGLAITSSPTEYYTGLMERVVDGPQAKSWATGIQEAMNLRGQKI
                     DMIIKPTTSIYAPYYLSSRGYAVLVNGNWPGYFDFAVSDPGRVKIEFEGPSFDLKIYT
                     ASDPAALVRAHAIDAGPPFMPPKWMFTPWRWRDEHTQRPTYYDGTPVTGPFNSEIMED
                     VLMMKAFGIPNGIYWIDRPWGPGKPWGYDDFDIDEQ"
BASE COUNT          275 a          272 c          256 g          242 t
ORIGIN      
        1 cgaaaccaaa cattcagtta gtcgaagtca aaaagcggta aggaatgtgc gataagcgtc
       61 tgtcttgtcg ttatgcagca atagaagctt ctgcagcgac actacgacaa gctgaagcat
      121 atcggacaaa aagaacacat cgatgaaaac aaaacttctt ctatgcatct ctgcgttgct
      181 ggttctcagc gctgcttcgt tggcccagca aaggtcttca atcacgttgc aatcagccaa
      241 cttaaaacca atcgccggca gtcgtacctt gacgatcgac aacatgttct tcgaaacagc
      301 aaacggtcgc gttgaaattc cggtgctgaa cctggacgcg agtgttggct caatcgatgt
      361 aacagctggt ggtcacaaga taactgtctc gttcaaacca cagggtcgcg atttcaaagt
      421 cacgctcaag gcccaaccgg attctgacat cacaaagtgg ggactcgcga tcacttcttc
      481 gccaactgag tactacaccg gtttgatgga acgtgtggta gatggcccac aggcgaagtc
      541 gtgggcgacg ggaattcagg aagcaatgaa ccttcgaggt cagaagatcg acatgatcat
      601 caagcccacc acatcgatct atgcacctta ctatttatcg tctcgaggtt atgcagttct
      661 tgtaaacggg aattggcctg gatacttcga ctttgctgtt tcagatccag gccgcgtcaa
      721 gatcgagttt gaagggccat cgtttgatct gaagatctat accgcatccg accccgcagc
      781 acttgttcga gctcacgcga tcgatgctgg cccaccgttt atgcctccga agtggatgtt
      841 tactccatgg cgctggcgtg acgaacacac ccaacgcccc acttactacg atggcacgcc
      901 agtcaccgga ccattcaatt ccgaaatcat ggaagatgtc ctgatgatga aggcgtttgg
      961 aattccgaac ggcatctact ggatcgatcg tccgtggggt cccggcaaac cctggggcta
     1021 cgacgacttc gatattgatg aacag
//
LOCUS       DATCGC010000442         1031 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_173285, whole genome shotgun sequence.
ACCESSION   DATCGC010000442 DATCGC010000000
VERSION     DATCGC010000442.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1031)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1031)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1031
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_173285"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            132..>1031
                     /locus_tag="VIJ87_04255"
     CDS             132..>1031
                     /locus_tag="VIJ87_04255"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY5443680.1"
                     /translation="MQWLAEICVKRPVFATMIITSLVVVGVFSFFSLGVDLFPKIDFP
                     TITVTVRNPGSSPQEMETEVTDKIEEAVNTISGIDELRSTSVEGITQVFVQFVLEKDV
                     NVAAQEVENRVQTVIPNLPDTAEQPTVQKLDSDAAPVLRIVVSAPAALREVTEVAKHQ
                     IKERIESVNGVGQITIIGGRERQINVWVDPDKMRSYNVTPAEVSNALKIQNVEFPSGR
                     LDEGQKETSVRTVGKIQKPQEFDDLVVATRGNYQVKVKDLGYTEDGAEEIRSEARLNG
                     EAAVVLIVSKQSGQNTVAVAHDIK"
BASE COUNT          276 a          236 c          275 g          244 t
ORIGIN      
        1 ttattgaagg tgatgtggtg gcaacgagca atgtaaatgc tttaagagat ggtgcactcg
       61 tccgtcaatt gtagggctta tcaaagctaa ttggagacaa ggtttgcttt agagattgag
      121 cggtaggaat tatgcagtgg ttagctgaaa tatgtgttaa gcgtccagtg ttcgcgacaa
      181 tgatcatcac gtcgctggtt gtcgttggcg ttttctcgtt ctttagtttg ggcgtcgatc
      241 ttttccctaa gatcgacttt cctactataa cggtcactgt tagaaacccc ggctcttctc
      301 ctcaggagat ggagaccgag gtcaccgaca agatcgagga agccgttaac acgatcagcg
      361 gcatagatga actacgttca acatcggttg aaggaattac ccaagtattc gtgcagttcg
      421 ttcttgaaaa ggacgtcaat gtcgctgccc aagaggtcga gaatcgcgtc cagactgtca
      481 tccccaattt acccgatacg gccgaacagc ctacggtaca gaaactggat tcggatgccg
      541 caccagtcct gcgaatagtc gtatccgcac cggccgctct ccgagaggtg accgaggttg
      601 ccaagcatca gatcaaagaa cgtattgagt cggttaacgg tgttggacag atcacgatca
      661 ttggcggccg cgagcgtcaa ataaatgtct gggtcgatcc ggacaaaatg cgttcgtata
      721 acgttacacc tgcggaagta tcgaacgccc tcaagattca aaacgtggaa tttccgtctg
      781 gccgcctcga cgaaggccaa aaggaaacaa gtgtccgtac ggtcggaaag atacaaaagc
      841 cgcaggaatt tgacgatctt gttgtcgcca cccggggaaa ttatcaggtc aaggtaaaag
      901 accttggtta caccgaagat ggtgcggaag agatcagatc tgaagccaga ttgaacggtg
      961 aggccgccgt cgttctgatc gtttcaaaac agtcaggcca gaacaccgtt gccgtcgcac
     1021 atgatataaa g
//
LOCUS       DATCGC010000443         1027 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_205867, whole genome shotgun sequence.
ACCESSION   DATCGC010000443 DATCGC010000000
VERSION     DATCGC010000443.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1027)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1027)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1027
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_205867"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..890
                     /locus_tag="VIJ87_04260"
     CDS             <1..890
                     /locus_tag="VIJ87_04260"
                     /inference="COORDINATES: protein motif:HMM:NF013134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein subunit M"
                     /protein_id="HEY5443681.1"
                     /translation="LLTTMKDYITRPTRLVNLKNIKGLNRLSLDAKGLTIGALITLTE
                     LEEHQGVRRNLPGLAEAAHSVASPQIRNLGTVGGNLCQRPRCWYFRLEEVECLKKGGS
                     ICYAAEGENKYHAILGGGPSYIVHPSDLAPMLVALGAQLTVVGPEGKKVIPIEKFFTL
                     PAEGSIRRENVLKNDEIVTEIYVPQSGFSAHSTYLKFKERDSLDFAMASVAAAVQMAG
                     NTVKEARIVLGGVAPIPWRVPAAEKYLAGKSLTKETMTEAGKIALAGAKPLDKNAYKV
                     PLTQTLVRRALAKVGGVST"
BASE COUNT          269 a          248 c          277 g          233 t
ORIGIN      
        1 acctactgac aacgatgaag gattacatca cgcgtccgac gcgccttgtg aacctgaaga
       61 acatcaaggg tctgaatcgg ttgtcactcg atgctaaggg actgacaatc ggtgcactga
      121 tcacgttgac tgaactcgaa gaacatcaag gcgtccggcg taacctgccc ggcctggcag
      181 aagcggccca ctcggttgca tcgcctcaga ttcgaaacct cggcacggtt ggcggcaacc
      241 tttgtcagcg tccacgctgt tggtacttcc gtctcgaaga agttgagtgc ttgaagaagg
      301 gcggatcgat ttgttatgcg gccgaaggtg aaaataaata ccacgcgatt ctgggcggtg
      361 gtccgtcata cattgttcat ccttccgacc tggcaccgat gctggtcgct ttgggtgcac
      421 aacttacggt ggttggtcca gaaggaaaga aagtaattcc gatcgaaaag tttttcacct
      481 tgccggcgga aggaagtatt cgccgcgaga atgttctgaa gaacgatgag atcgttaccg
      541 aaatctatgt accgcaatca ggtttctcag cacattcaac ttatctgaaa tttaaggaac
      601 gtgactcact cgactttgcg atggcttcag tcgccgcagc agttcaaatg gcgggcaaca
      661 cggtgaaaga agcacggatt gttttaggtg gtgttgcccc gataccgtgg cgagtccccg
      721 cggccgagaa gtatctggca ggcaagtcgc tgactaaaga aacgatgact gaagccggca
      781 agatcgcgtt agcgggagca aagccattgg ataaaaacgc gtacaaggta ccgctcactc
      841 agactttggt gagacgcgcg ttggccaagg ttggtggagt ctccacctaa tctgagaaat
      901 ctgaggatca gtttttatgt tgagaggttg ctatgactga cgaaacaacc aataccgaaa
      961 caacggtcac gacacttcaa tcaccatttt gcggacagct gcgttccaag aaattcttca
     1021 aactaga
//
LOCUS       DATCGC010000444         1397 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_272414, whole genome shotgun sequence.
ACCESSION   DATCGC010000444 DATCGC010000000
VERSION     DATCGC010000444.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1397)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1397)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1397
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_272414"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..350)
                     /locus_tag="VIJ87_04265"
     CDS             complement(<1..350)
                     /locus_tag="VIJ87_04265"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY5443682.1"
                     /translation="MAASLSIVIPAYNEAVRLGNSLRTIVAYLRENWPDAELIVVDDG
                     SSDNTAALARQAFEDSGNLRTSVISYKSNLGKGRAVRLGLLAARGDVALFTDADLSTP
                     ITETPKVIEPILRG"
     gene            431..>1397
                     /locus_tag="VIJ87_04270"
     CDS             431..>1397
                     /locus_tag="VIJ87_04270"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY5443683.1"
                     /translation="MEAARQLSDPTPTYTSSRLGRKFIGVAAVIVVLAAIFGGTIGSS
                     RKFNSLTNTGNLNSYRASDEIEKDYNEAVSTITTNYSGEIDYEKATQAAIQGMLSTLD
                     PHSAYFPFTEFRKLKEDQDSRFYGIGVTIVQHRDGVYIQSAVEATPAARIGLKYGDKI
                     LEVDGKDSRDWTSEQVSKNVRGGLGEPVTLKVGRAGSEAPLYFTIVRDAVPLPTIRNA
                     YMIRPGTGYIGLTGGFQRSSDDELRQAIKKLDEQGMRQLILDLRGNPGGLLDQAIDVA
                     GEFLPRGQVVVSVKGRTEYSDPVVYKSSGSEPSTVPLVVLINRGTA"
BASE COUNT          347 a          347 c          378 g          325 t
ORIGIN      
        1 tcgccacgca agatcggctc gatcactttt ggtgtctcag ttatcggcgt tgagagatcc
       61 gcgtcagtaa acagcgcaac gtcaccccgg gcagcgagta atccaagtcg gacagctcta
      121 cctttaccga ggttagattt atagctgatg actgaggttc ggagatttcc gctgtcttca
      181 aatgcctggc gtgccaacgc ggctgtattg tcagaggagc catcgtcaac cacgattagt
      241 tcggcgtccg gccagttttc tcgaagatag gcgacaattg tccgtaggga atttcccaat
      301 cggaccgctt cgttgtatgc aggaattaca atagagagag atgctgccat cgaaggttct
      361 cgcgcgcaat ataccacagc ggaatgcgga cgtttcggac tcagagtgtt gcctgtgcta
      421 tattttgatc atggaagctg cacgccaatt aagcgacccg acacccacgt acacaagtag
      481 tcgcctggga agaaagttca tcggtgttgc tgcagtgatt gtggttcttg ccgcgatttt
      541 tggtggcacg attggcagct caagaaaatt caacagttta actaataccg gcaatctgaa
      601 ctcatatcgc gcgtcggacg aaatcgagaa agattacaac gaagccgttt caacgataac
      661 cactaactac tccggtgaaa tcgattacga aaaggcgact caagcagcca tccagggaat
      721 gctttccacg ctggatcccc attcggccta ctttccgttt accgaatttc gaaaactaaa
      781 agaggatcag gattcccggt tctacggaat cggcgtcacg atcgttcagc atcgagacgg
      841 tgtttacatt cagtcggccg tcgaggcgac tcccgcggca cgaatcggac tgaaatacgg
      901 tgacaagatt ctggaggtcg atggtaagga ctcccgagac tggacgagcg aacaagtttc
      961 caagaacgta cgaggtgggc tgggtgaacc cgtaaccctg aaggtgggac gagcaggttc
     1021 cgaagcgccg ctgtacttca cgattgttcg tgatgccgtt ccgcttccga caattcgtaa
     1081 cgcctacatg attagaccgg gaacaggtta catcggtctc accggaggat tccaaagatc
     1141 aagtgacgac gaattgcgcc aggcgatcaa aaagcttgat gagcagggaa tgcgtcaact
     1201 gattctggac cttcgtggaa accctggtgg attacttgat caagcaattg atgttgccgg
     1261 tgagtttttg ccacgcgggc aggttgtcgt ttccgtgaaa gggcgaactg aatacagcga
     1321 cccggtagtt tacaagtcga gcggttctga accctcaact gttccgctgg tggtgctgat
     1381 caatcgcggc accgcct
//
LOCUS       DATCGC010000445         1716 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_73895, whole genome shotgun sequence.
ACCESSION   DATCGC010000445 DATCGC010000000
VERSION     DATCGC010000445.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1716)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1716)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1716
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73895"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..273
                     /locus_tag="VIJ87_04275"
     CDS             <1..273
                     /locus_tag="VIJ87_04275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443684.1"
                     /translation="CSAKQEVFLSDKTNETDPNRHPLRKCFLGQQLFAYSLRVLIWKT
                     TRAVLPQVLVRVITRYFVDRLLPSEKSDPRALHEITPTKGHGKLEA"
     gene            complement(674..>1716)
                     /locus_tag="VIJ87_04280"
     CDS             complement(674..>1716)
                     /locus_tag="VIJ87_04280"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY5443685.1"
                     /translation="PELAGVITQFSADVPQIFADVDRDKALKQGVAIADVYQTLQAYL
                     GGLYLNQFNRFGRQWRVFLQSEGEMRRTEQDIDNYYVRNKDGDMVPLSALVSTRSIAG
                     PEYTNRFNLYRSAQIIGAAAPGYSSGQAMDALDEVAREVLPREMGYDWADLSYQEKQT
                     SGAAAKALALSLVFVFLILAALYESWSLPFSVLLTVPIALFGAFIGLLLRGYDLGVYA
                     QIGLIVVIGLAAKNAILIVEFAKLEFDRGRGLLESALEGARLRRRPLLMTSLAFIAGC
                     LPLWFSTGSGAAARQILGTVVVSGMLADTIIASFLIPVSFYAVEKLSMRFGKRHEATV
                     QGPPTVEPVSGD"
BASE COUNT          458 a          490 c          387 g          381 t
ORIGIN      
        1 tgttctgcta aacaagaagt cttccttagt gataagacga atgagaccga cccaaatcga
       61 catccgctcc gaaaatgttt tttgggtcag caactatttg cctactcgct tcgtgttctt
      121 atttggaaaa cgacgcgcgc cgtattaccg caagttcttg ttcgtgttat tacgcgttat
      181 ttcgtggatc gcctgttacc ctccgagaaa agcgatccac gcgcattaca cgaaataaca
      241 ccaacgaagg gccatggcaa attagaggct tgacacagtc tctacccacg acgagtcgag
      301 atactgaccc cgtgacctct gcgcaccgaa aacgttgtca cagaaacaag atcctaagaa
      361 cttgctgcgc acaggagacg cagagaaaac ctctgcgctc tctggtctca gcatttgaaa
      421 tatcctgaat cgtttactcc gaggcgcaga gtacacagcg ccgcctcagc cgcaaccaaa
      481 agctacgatc caagcgcctc acacgaaaca tcacgaactg tatttcgtgt tggcttgatt
      541 tcgtgttgat tcgtgtgagg cgcgtggatc ttcctcctgt caatacttgg ctcaaaaaac
      601 aagaagttgg gttcttgcta cgcagaggcc actcagaaaa ggtgtcattg aacaacgcag
      661 caactctctt ttttcaatct cccgacaccg gttctaccgt cggtggtccc tgcaccgttg
      721 cctcgtgtct ctttccaaac ctcattgata gtttctcaac agcataaaaa ctaaccggga
      781 tcagaaaact cgcgattatc gtgtcagcta acattccaga aacaaccaca gttcccagta
      841 tctgacgcgc ggctgctccc gacccggtcg agaaccacaa cggtaaacag ccggcgatga
      901 acgcaagaga agtcatcaac aacggccgac gtctcaagcg cgcaccttcc agcgctgatt
      961 cgagcagtcc ccgccctctg tcaaattcca gctttgcgaa ctcgacgatc agaattgcat
     1021 tcttggcagc gagacctatc acgacaatca aaccgatctg cgcgtacaca cccaggtcgt
     1081 agccacgcaa caacagaccg atgaacgctc cgaacaaagc aatcggaacg gtaagtaaaa
     1141 cggagaaagg taacgaccag ctttcgtaaa gcgcggccag gatcagaaaa acgaagacca
     1201 gtgacaacgc aagcgccttc gctgctgctc ccgacgtctg tttttcctgg taagaaagat
     1261 cagcccagtc gtatcccatt tcgcgtggta gaacttcacg cgctacttca tccaacgcat
     1321 ccatcgcctg accagaactg taaccgggtg cggcggcccc aattatttgc gcgctacgat
     1381 aaagattgaa ccgatttgta tattcaggac cggcaatact ccgcgtggaa accaacgccg
     1441 atagcggcac catgtcgcca tccttgttcc gcacgtaata gttgtcgatg tcttgttcgg
     1501 tccgccgcat ttcaccttcc gattggagga aaacacgcca ctgccttccg aagcgattga
     1561 actggttgag atacagacca ccaagatagg cctgcaaggt ttgataaacg tccgcgatag
     1621 ccacgccttg tttcagagct ttatctcgat ctacgtcggc aaagatttgc ggaacgtcgg
     1681 cggagaattg agtaatcaca ccggctaact ccggac
//
LOCUS       DATCGC010000446         1349 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_9131, whole genome shotgun sequence.
ACCESSION   DATCGC010000446 DATCGC010000000
VERSION     DATCGC010000446.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1349)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1349)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1349
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9131"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            167..919
                     /locus_tag="VIJ87_04285"
     CDS             167..919
                     /locus_tag="VIJ87_04285"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HEY5443686.1"
                     /translation="MNLKLLSYNIRFGGLGREAALAEVITQVAPDIVVFQEAIHPEVI
                     ERLSQSTGLPFWAARKDHSIGYLSRIEIGYHEWHYPAGAKHSFLEIVPAGTETRIFGL
                     HLSARFSKWDERKRTREIRSLLEGIKRYQEGFHVLVGDFNTLAPGEVLEIKRMPAWIR
                     GLIWISGRKLQRESIQLMLDSGYVDGYRGLHPDIPGYTFPTWDRRVRLDYVFLPKTFA
                     ERLIACEVISEPEGLIRAASDHCPLSVELTLA"
     gene            complement(1005..>1349)
                     /locus_tag="VIJ87_04290"
     CDS             complement(1005..>1349)
                     /locus_tag="VIJ87_04290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443687.1"
                     /translation="IERKMNFIVEQQAQFASDIQQLQESQTRTEKVVVQTSEAVAVTA
                     ETVAQMGDVVTRLANVTHVGFTKVNANLNTIVDAQIRTEENVARTNESLTNLIAVVDR
                     RFREEDRNGSNA"
BASE COUNT          307 a          327 c          362 g          353 t
ORIGIN      
        1 acaaagatcc ctcggtagca ccaacgctga attcgttgcg cgaatcgctg caacaactgg
       61 ttggccggcc agtaaacttt caagcgacct cgagtcttgt cttgtttgct cgcgacgttt
      121 tgttaggtga gccgtactac gtggttgtgc cacccggtga aactgcgtga atctgaaatt
      181 gctgagttac aacattcgct tcggaggact tggacgtgaa gcggcgcttg cagaagttat
      241 cacgcaagtt gctccggata tcgtcgtgtt ccaggaagca attcacccgg aagtgatcga
      301 gcggctttcg cagtcgacgg gactaccatt ttgggctgcg cggaaagacc attcgattgg
      361 ctacctgagc cggatcgaaa ttggttatca cgaatggcac tatccggcag gcgccaagca
      421 ttcctttctt gaaattgttc cggcaggaac tgaaacacga atctttggtc ttcacttgag
      481 cgccaggttt tcaaagtggg atgaacgaaa gcgaacgcgc gagattcgtt cactcctcga
      541 aggaatcaaa cgttaccagg aaggctttca tgttctggtt ggtgacttca atacgctggc
      601 gcccggtgag gttttggaaa tcaagcgaat gccggcttgg attcgtggtt tgatctggat
      661 tagtggaaga aaacttcaac gagaaagcat tcagttgatg ttggactctg gctacgttga
      721 tgggtaccgc ggtcttcatc cagacattcc cggatatacc tttccgacgt gggatcgacg
      781 tgttcgactt gactatgttt tcttgccgaa gacctttgcg gaacggctaa ttgcatgtga
      841 agtgataagc gaaccggagg gtctcattcg agcagcttcc gatcactgtc cgctgagcgt
      901 cgaactaacg ttggcttgag cgcggagcgt ccccaagcaa ctaacgacaa aggcaactaa
      961 tcgacagtct gctcaaagcg cttaattggg ctgtcgccgt gatttcaagc gttactgcca
     1021 tttcgatctt cttcgcgaaa acgacgatcg accaccgcga taaggtttgt cagactctcg
     1081 ttagtgcgag cgacgttctc ttcggtgcga atctgggcat cgacaatggt attgagattg
     1141 gcgtttacct tggtgaagcc gacatgcgtc acatttgcga ggcgagtgac gacgtctccc
     1201 atttgagcca cagtctcagc agtcacggca acggcctctg atgtttggac gacaactttc
     1261 tccgttcgcg tttgcgattc ctgcagctgt tgaatatcag aagcgaactg ggcctgttgc
     1321 tccacaatga aattcatttt tctttcgat
//
LOCUS       DATCGC010000447         1828 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_173386, whole genome shotgun sequence.
ACCESSION   DATCGC010000447 DATCGC010000000
VERSION     DATCGC010000447.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1828)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1828)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1828
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_173386"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(102..1613)
                     /locus_tag="VIJ87_04295"
     CDS             complement(102..1613)
                     /locus_tag="VIJ87_04295"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HEY5443688.1"
                     /translation="MRQFTFHFPRMRTALVALCSMSLLAVVLVYTQHVSAIDQDILKL
                     NRIVQTNKVNTAATMIFKEGRDMIEAQNWSKAAQKFSEFIKGYPKEKDVDAALYWYGY
                     ALQKQGLKEDAATPLRRLIERFPGSSWRREAEALLVMMGYQNIVADFKNNDDCEIKVL
                     ALQSLFQADEDRAIAIVTESLKAGSTNCPGFQSAAVSLLGSHGGARAVPILLEIARGN
                     GDLKLRLTAVKRLGEQHSEQVSDELIKLYDATQTNELRAQILRALIESRTQRGSAKVI
                     EVARGGSDLALRQYAIRFIAELRDPASLDELIRIYDTDKTMEIRVQVLRALSERDDPR
                     ARAKILEVAKSGETPQLRIEAIRRLGEHGRIGMDDLLQLYTTEQDLNIKQGLLRAFSD
                     SNDPRALAKLFEIAHGNDPTSMRSFAIRVLGNKDDEQTVNQLVAMYDGEQNTEVRMAL
                     LRAFGDSKQKVAVRKLMTIARSDPSVEQRKLAVRFLGDSKDPEALKFLEELLK"
BASE COUNT          402 a          497 c          459 g          470 t
ORIGIN      
        1 ccctgattag cgtccgatat gctttagctt gtcgttgact ctcgaaacac gcttcttact
       61 tcgcacgcga caagctgaag cttatcgaac attcggcctg cttacttcag cagctcttcc
      121 aaaaacttga gcgcctcggg atctttactg tctcccagga atctgaccgc aagcttccgc
      181 tgttcaactg acggatcgct gcgcgcgatg gtcatcagct ttcgcaccgc caccttttgt
      241 ttggaatcgc caaaggcccg gaggagggcc atgcgcactt cggtattctg ttcaccgtcg
      301 tacatggcga cgagttgatt caccgtctgc tcgtcgtcct tgttgcccaa cacccgaatc
      361 gcaaaggagc gcatacttgt agggtcattg ccatgggcaa tttcaaacaa cttcgctagc
      421 gcacgtggat cgttgctatc agagaacgcc cgcaagagtc cctgctttat gttgagatcc
      481 tgctccgtgg tatagagctg aagcaggtcg tccatcccga tccgtccatg ctcgccaagc
      541 cgtcgaatcg cctcaatacg cagttgcgga gtttcgcctg actttgcaac ttcaagaatt
      601 ttcgcgcgcg cgcgtggatc gtcacgctca gacagtgcgc gaagaacctg cactcgaatc
      661 tccatcgttt tgtctgtgtc gtaaatgcga atcaactcgt caagagaggc cggatcccga
      721 agttctgcga tgaaccgaat agcgtattga cgaagagcca ggtcgcttcc accccgcgca
      781 acctcaatga cctttgcgct cccgcgctgc gttctgcttt cgatcagtgc acgaagaatt
      841 tgagcgcgca gttcgtttgt ttgagtagcg tcgtagagtt tgatgagttc gtcactaacc
      901 tgttcgctat gctgttctcc caggcgcttc acggctgtta agcgaagttt tagatcaccg
      961 ttaccgcggg cgatttcgag caggattgga actgcgcgcg caccaccgtg cgaacccagc
     1021 aaggaaaccg cagccgactg aaaaccagga caatttgtgg agccagcctt tagtgattcg
     1081 gtgacgatcg cgatagctcg atcttcatcg gcctgaaaaa gactttgcag tgcgaggact
     1141 ttaatctcgc agtcgtcgtt gtttttgaaa tcagccacta tgttctgata gcccatcatg
     1201 accaggaggg cttcggcttc gcgacgccaa ctggaaccgg gaaaccgttc aatcaaacgc
     1261 ctcagcggtg tggctgcgtc ttctttaaga ccctgttttt gtaatgcata gccgtaccag
     1321 taaagggctg catcgacgtc tttctctttt ggatagccct taatgaattc gctaaatttc
     1381 tgtgcggcct tcgaccaatt ttgcgcctcg atcatgtcgc ggccttcctt aaagatcatc
     1441 gtggccgcag tattgacttt gttcgtttgc acaatgcgat tgagcttcag aatgtcttga
     1501 tcaattgccg aaacgtgctg tgtgtacacg agaacaacgg cgagcaggct catgctacag
     1561 agcgcaacca gtgcggttct cattcggggg aaatgaaaag taaattgtct catcgtcatc
     1621 agtcctttag ttcagtcctt taatatgttg gattgcttga gttagccggt tcaccgcaca
     1681 agcacagaga acccgagagc aagcgcagaa gatcgagcgg tgatcaaaac gcacatggca
     1741 tctccatgtt ccctgtgctt ttgaggtgaa acattgccga gtttcgactg ccatttgccg
     1801 actggcagca gcagcgcaac cgtgttcg
//
LOCUS       DATCGC010000448         1029 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_372382, whole genome shotgun sequence.
ACCESSION   DATCGC010000448 DATCGC010000000
VERSION     DATCGC010000448.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1029
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_372382"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            68..517
                     /locus_tag="VIJ87_04300"
     CDS             68..517
                     /locus_tag="VIJ87_04300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443689.1"
                     /translation="MTEKDTQLEGIDVKQRVVSEVRTLQHWYSAEFERRLSELTQVLN
                     AQLEVRVEEIRAHYAAQVKAPKQVENGSAQHVEPSGAILDEIARSEASAQKFTAELER
                     MVSDDNVALGKLLQMRSQEMEIRAYIRGLKYRAEAGIPAAQPVETTK"
     gene            complement(543..>1029)
                     /locus_tag="VIJ87_04305"
     CDS             complement(543..>1029)
                     /locus_tag="VIJ87_04305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443690.1"
                     /translation="CPHVKLFSGPKNHGAWNPGKAGCQWGLGMVTKELITELEKARDL
                     FEWTLSPSSGPAHERRRTPRLRVRGILKSNPELTVFDPIGAVCFSKTGFMFSEDYWVE
                     AAISIGLSIEDARDIMSAANDMTWRNVNDRREPDPYKHALRKCLVDVTRPQQEIAALS
                     H"
BASE COUNT          246 a          266 c          298 g          219 t
ORIGIN      
        1 tagaatccga catgttgctg cttagggcgc aaatggtgtg atggacttga aggctcagga
       61 tcgaagcatg actgaaaaag acacgcagct tgaagggatt gatgtcaaac agcgtgtcgt
      121 gagtgaagta cggacccttc agcattggta ttcggctgaa tttgaacgtc gtctgtctga
      181 actgacccag gtgttgaacg ctcaactcga ggtcagggtt gaggaaatcc gagcgcacta
      241 cgcagcgcaa gtcaaggctc caaagcaggt agagaacggt tcagcacagc acgtagagcc
      301 atcaggggcc attctcgacg aaatcgcgcg cagtgaggca agcgctcaga aattcaccgc
      361 agaactcgag cggatggttt ccgatgacaa cgtagctctg ggtaaattgc tgcaaatgag
      421 atcgcaggaa atggaaataa gggcctacat tcgcggtctg aagtaccgcg ccgaagccgg
      481 tatacctgcc gcgcaaccgg tcgaaaccac caagtaagca atcgcgttct aatttctgag
      541 gatcagtgcg aaagggcggc gatctcttgc tgaggtcgcg tgacgtcgac gaggcacttt
      601 ctaagggcat gcttgtaggg atcgggttct cgccgatcgt tcacgttgcg ccacgtcata
      661 tcgttggccg ccgacatgat atcccgggca tcctcgatgg acaggcctat cgaaatcgct
      721 gcttcgaccc agtagtcttc gctgaacata aagccggttt ttgaaaagca aaccgcacca
      781 atagggtcga agaccgtaag ttcaggattg ctcttgagta tgcctcgaac tcgcagacgt
      841 ggagttcgcc ggcgttcgtg cgccgggccg ctggaaggtg acagggtcca ttcgaagagg
      901 tcgcgtgcct tctccagctc cgtgatcagt tctttcgtga ccatccctaa cccccactgg
      961 caacccgctt tgccaggatt ccaggccccg tggttcttcg ggccgctgaa aagcttaacg
     1021 tggggacat
//
LOCUS       DATCGC010000449         1001 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_173419, whole genome shotgun sequence.
ACCESSION   DATCGC010000449 DATCGC010000000
VERSION     DATCGC010000449.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1001
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_173419"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(273..>1001)
                     /locus_tag="VIJ87_04310"
     rRNA            complement(273..>1001)
                     /locus_tag="VIJ87_04310"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          228 a          271 c          253 g          249 t
ORIGIN      
        1 tctcagatcg aatctgacgg aggcttcaag attgccaaat cgcgcattgg gactcaccaa
       61 aatctgatca aggacgagaa cgacgacgac gattcgaagc accgttgttt agtaggaaag
      121 tgctttctga aagaaatcag aagaagggtg tcattgaaaa ctgaattgtg cgataaggga
      181 gccaatccgg gaaaaacaaa ttgtttagat ttgagattca ccgttcgacc tcggaagtcc
      241 ggttttgacc cggacccgtg gtttctcctt agaaaggagg tgatccagcc gcaggttccc
      301 ctacggctac cttgttacga cttcatccca atcaccatcc ataccttcgg catctgcctc
      361 cttgcggttg gcacgatgac ttcgggtaca aacggctttc atgatgtgac gggcggtgtg
      421 tacaaggcct gggaacgtat tcacggcgcc gtagctgatg cgccattact agcgattcca
      481 acttcatgcc gtcgagttgc agacgacaat ctgaactggg cccggtttta ggggatttgc
      541 tccaccttgc ggtcttgctt ccctttgtgc cgggcattgt agtacgtgtg cagccctggc
      601 cgtaagggcc atactgactt gacgtcatcc ccaccttcct cctcgtttaa gcgaggcagt
      661 ctgtccagag tgctcccaat taaggggtgg caacaggaca caggggttgc gctcgttgcg
      721 ggacttaacc caacatctca cgacacgagc tgacgacagc catgcagcac ctgtgcatac
      781 tggtattgct acctcgtcag gctttcaccc ttctactata tgcatgtcaa ggccaggtaa
      841 ggttcttcgc gttgcatcga attaagccac atactccacc gcttgtgcag gcccccgtca
      901 atttctttga gttttaatct tgcgaccgta cttcccaggc ggcttgctta acgcgttagc
      961 tccgccacaa gaggggtcga ttcctcttac agcaagcaag c
//
LOCUS       DATCGC010000450         1406 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_9263, whole genome shotgun sequence.
ACCESSION   DATCGC010000450 DATCGC010000000
VERSION     DATCGC010000450.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1406)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1406)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1406
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9263"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            179..1102
                     /locus_tag="VIJ87_04315"
     CDS             179..1102
                     /locus_tag="VIJ87_04315"
                     /inference="COORDINATES: protein motif:HMM:NF024748.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEY5443691.1"
                     /translation="MRLPLCFLALAIITSAAPNSFSQSLAILPSTVDDKPAPKLDDQV
                     KALVASFKGKVTLYAKNLDTGETYALNADERVRTASTIKIAVMIEAFARVNEGKAKWT
                     DQVVLTKEKKVSGSGILSELSDGLHLTLRDAVNLMMMLSDNTATNLVLDVLTTDAVNA
                     RMESLAFKNIKINRKVMSGGESQAGKDPENKKYGLGFATPHEMVLVMEKLERGEIISP
                     AVSKEMIDLMKREQARYAIGRSLWDLPLASKYGALDRLRSAIGIIYSKKGKIAMAISC
                     DDMPEIMWSVDNPAYVLMSQLSEVLVNGLGK"
BASE COUNT          373 a          347 c          366 g          320 t
ORIGIN      
        1 ttcgcctcag cggcatagcc gccttgctaa attgtagcgg ccggaaagcc agaggctttc
       61 cgcacggaga gcggcaaagc cgcaaacttg agaacaagtc tgagccacac gcttgaggca
      121 cacgcttgag ccacacgcta ccgcgtagtg gtactgactc caatccaatc aaacaactat
      181 gagactacct ctttgttttc ttgcactcgc aatcatcacg tcagctgcac caaattcatt
      241 ctcacagtca ttggcgattt tgccctcgac ggtcgacgac aagccggcac caaagcttga
      301 tgatcaggtg aaggctctcg tcgcttcgtt caaaggcaaa gtcactttgt acgccaagaa
      361 cctggacacg ggagagacgt atgcgcttaa cgccgacgaa cgggtgcgga ccgccagcac
      421 aatcaagatt gccgtgatga tcgaagcgtt tgcgcgtgta aacgaaggca aagccaagtg
      481 gactgatcaa gtggtgctta ctaaggagaa gaaagtctca ggctcaggaa ttctgtctga
      541 gttatcagac ggacttcact taacgctgcg cgatgctgtc aatctcatga tgatgctgag
      601 tgacaacact gcgacgaatc tcgtccttga tgtgttaacc actgacgccg tcaatgcgcg
      661 catggagtca cttgctttta agaacataaa gatcaatcgg aaggttatga gtggtggcga
      721 aagtcaggcg ggaaaagatc ctgagaacaa gaagtatggg ctcggttttg caactccgca
      781 cgaaatggtt ttagtgatgg aaaaactgga acggggcgag atcatcagcc ctgcggtttc
      841 gaaggaaatg atcgacctga tgaaacgtga acaggcgaga tatgccatcg ggcgttcact
      901 ctgggatttg ccgttggcaa gcaagtacgg cgctctcgat cgtctcagaa gcgcaatcgg
      961 gatcatctat tccaaaaaag gaaagatagc gatggcgatt tcctgcgacg acatgccgga
     1021 gatcatgtgg tcagtcgaca accctgcgta cgtgttgatg tctcagcttt cggaagtgct
     1081 ggtcaatggc ttgggcaagt aagagggcca tcgacatatt acggacgcct ccctggagtg
     1141 cggtggcctg gcaccgcttt ggtaaacatg ctttcttcgc gagctgacct ttaccaaagc
     1201 ggtgccaggc caccgcactc cacgaaggcg tccgtaatat gtggatgagt gtgtacgtaa
     1261 aaatggaaat tctctgctga cattttctga accacctctc atcgtttcac acctcacgat
     1321 atcactcgta ttcaagaaca taattaacca tccgaaaaca taaagggtcg cgtcgactca
     1381 aatggatttc tctacatttt agtgga
//
LOCUS       DATCGC010000451         2089 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_139548, whole genome shotgun sequence.
ACCESSION   DATCGC010000451 DATCGC010000000
VERSION     DATCGC010000451.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2089)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2089)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2089
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_139548"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..381
                     /locus_tag="VIJ87_04320"
     CDS             <1..381
                     /locus_tag="VIJ87_04320"
                     /inference="COORDINATES: protein motif:HMM:NF012626.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443692.1"
                     /translation="SGGIAVPEVHATHDSAAAIGLILQHLAKVDEPLSSLVSSLPKLS
                     IIKQNIQLEPNRLYSILHNFRLSVEREQLVPDLTDGIKVSLPGGWVHARASNTESMIR
                     VIVEAEEPERARQLLEWARDRIRS"
     gene            494..1855
                     /gene="glmM"
                     /locus_tag="VIJ87_04325"
     CDS             494..1855
                     /gene="glmM"
                     /locus_tag="VIJ87_04325"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR03990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEY5443693.1"
                     /translation="MRAIPTLKISISGVRGVIGDSLSPTLLTRFAQAFGTYLGSGTIV
                     IGRDPRTSGEMVKQAVIAGLLSSGCRVIDVGMCPVPTVQMMVRQYGAQGGLAITASHN
                     PPEWNALKFIGTDGLFLSSASAREMLDIYHQGEYTKVTGAEMRGVELMFGATDLHISE
                     IMEKLGPLQPLSRPLRVVLDACNGAGSIVGPKLLRALGAEVFTINDQPNGQFPRPAEP
                     LPENLGDLCAAVIKQGADIGFAQDMDADRLAIVSDQGIPIGEDYTLVLATSYVLGKER
                     GPVVANLSTTDALDFVAQKYNCPLYRTRIGEANVTERMQSEDAVIGGEGNGGVIYPRI
                     NFARDSLVGMALILHLLAKQQRSLTAIMSELPRLYMIKEKVICPSHKIRDVLHMIRRV
                     YAEFPMDLTDGVKVSLPHGWLHVRGSNTEPIIRLSAEAGNELDARQITDSILGLVKEQ
                     IKS"
BASE COUNT          537 a          510 c          545 g          497 t
ORIGIN      
        1 agcggcggaa tcgcagtccc cgaagtacac gccacgcacg atagcgcagc cgccatcggt
       61 ctaattcttc aacaccttgc aaaagttgac gagcctctat cgagtctagt tagttcactg
      121 ccgaagctgt ctatcatcaa acaaaacatt cagcttgaac cgaaccgtct ttattcgata
      181 cttcataact ttcgactgag tgttgagcgg gaacaactcg ttcccgatct gactgatggc
      241 attaaagtca gcttgccggg tggttgggtt catgctcgcg cttcaaatac agaatcgatg
      301 attcgtgtca tcgttgaggc ggaggaacca gagcgcgcac gacaattgtt ggagtgggcg
      361 agagacagga ttaggagttg agttttggac tttagctttg tgttttgttg ttgatggtga
      421 gtctacaaaa gcctggatcg caccaagcac aaagctcaaa gaacaaagtt caagcaaaga
      481 gcaccacact tatatgcgag caatcccaac ccttaagatc agcatttccg gagtccgcgg
      541 cgtaatcggt gactcgttat cgccgacatt acttacgcgt tttgctcagg cgtttggaac
      601 gtaccttggg tcggggacga tagtgattgg ccgtgatcca cgaacctccg gtgaaatggt
      661 caaacaagct gttatcgcag ggctactttc gagcggctgt cgggtgatag acgttggtat
      721 gtgcccagtc ccgacggtgc aaatgatggt gcgacagtac ggcgctcaag gcggcctcgc
      781 aatcacagcc agtcataatc cacctgaatg gaatgcactc aagtttatcg gtactgacgg
      841 attgtttctc agctctgcgt cggcccgcga gatgcttgat atctaccatc aaggtgaata
      901 tacaaaagta actggcgctg agatgcgtgg ggttgagtta atgttcggcg ccactgatct
      961 tcatatcagc gagatcatgg agaaacttgg tcctctgcag ccactatcgc gtcctttgcg
     1021 agttgtgctc gacgcctgca acggagcagg ttcaattgtg ggaccaaagt tgctccgtgc
     1081 actcggggct gaggtgttca ccataaatga tcaacctaac ggtcagtttc caaggcctgc
     1141 cgaaccgtta ccggaaaacc tcggagatct ctgcgcagct gtaataaagc agggcgctga
     1201 tattggattt gcgcaggaca tggatgctga tcggctcgcg attgtttccg accaaggaat
     1261 accgatcggg gaagactata cgctggtcct ggcgacgtca tacgtcttag gcaaggagcg
     1321 aggccctgtc gtagctaatc tttcaacaac ggacgcattg gatttcgtgg cccaaaagta
     1381 caattgtccg ctctatcgaa ctcggatagg tgaggcaaat gtaacggagc gaatgcagag
     1441 cgaagacgca gtcattggtg gcgaaggtaa cggcggcgtg atttatcctc gaatcaattt
     1501 tgctcgcgac agtctagttg gaatggcgtt aatccttcac ctactcgcaa aacagcagcg
     1561 gtcactcacg gccatcatgt cggaacttcc acgactgtat atgatcaagg aaaaggtaat
     1621 ttgtccatct cataaaattc gtgatgtgct acacatgatc cgcagggtat atgcagaatt
     1681 tccgatggac ctaacagacg gcgtaaaagt ctccttgcct cacggctggc ttcatgttcg
     1741 cggttccaac actgaaccga tcatacggct ctcggccgaa gccggtaacg aattagatgc
     1801 tagacaaatc actgactcaa ttctcggctt ggtcaaagag cagatcaaat cgtgaatgat
     1861 caagagttcg aacattagtt agacctacgc gcaatcaggt ctagcttaaa gaaaaggctg
     1921 gaatgcgcag acgacatttc atcaaaacag ggacagccct caccatctta aatagtctgg
     1981 gcgtaggacg tgctcaagat cccccggcgc acaactggga ccgatatgac ttcggatccg
     2041 gacctgtcgt cacagatcgt ttgaaccagg gacctttcgg tattgaaca
//
LOCUS       DATCGC010000452         2813 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_106197, whole genome shotgun sequence.
ACCESSION   DATCGC010000452 DATCGC010000000
VERSION     DATCGC010000452.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2813)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2813)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2813
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106197"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..859)
                     /locus_tag="VIJ87_04330"
     CDS             complement(<1..859)
                     /locus_tag="VIJ87_04330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEY5443694.1"
                     /translation="MSKTKWRDRRRRLGLMLFGVIFGLALAEISLRAIGYNFPEFYVT
                     DASRGYALRPGVSGWYRKENDVFVRINSDGLRDLEHTKTKPPDTIRIAVVGDSYVEAL
                     QVPLESTFWFLLSKSLNSCSATQKHIEVINFGVSGYGTAQELLTLREHVWEYSPDIVL
                     LAVTTNNDISDNSKVLKKARDVPYFVYRADQLVLDESFRGTPEFQWRQSATGRVGRWF
                     RDHFRVIQAIIEGHRAARLRFAAWRSKTNSANPPTETQANSQNVVRSEELGTDNLVYI
                     EPSDPTWKEA"
     gene            complement(1038..1487)
                     /locus_tag="VIJ87_04335"
     CDS             complement(1038..1487)
                     /locus_tag="VIJ87_04335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443695.1"
                     /translation="MKRISLSIACLLALSFAAISVGAQTRARCANRQTSSNRRYDHSS
                     SRGYNNQVYRNNSYQTGVYNNQVFSNGGYGNSVSTDPQSGDYGYYGDNRSIWDRSRDK
                     ITTAAGAGGGAIIGSMIGGKRGAIVGAIAGGGTAALYTYKIRDKYRY"
     gene            1698..2705
                     /locus_tag="VIJ87_04340"
     CDS             1698..2705
                     /locus_tag="VIJ87_04340"
                     /inference="COORDINATES: protein motif:HMM:NF014476.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine cyclodeaminase family protein"
                     /protein_id="HEY5443696.1"
                     /translation="MTQDPQNVLVLNSTEIKLLLPMQECIEIMSDALQDLSRGEVIQP
                     LRMVVRPPDAKGVMAMMPAYRRGDESVFGLKAICFFHGNPAFGKDAHQGCVLLSSGET
                     GELRAIMNASTITELRTAAVSAVATRLLSRSDASNLAIVGAGVQARAHLVALSSVRNI
                     RRARVVSLNPNRPKQLAEEMRNTLPFPIEPVSSVQEALEGADIVVTATSARQPVIKRE
                     WISAGAHINGIGTYSPQAREIDSATMASSRIFVDRLESALNEAGDYLLAAEEGLIGPE
                     NIVAEIGEVLLGQKQGRTSNDEITLFKSLGLAVEDMACAEYLFRKAQSENIGTWIKFN
                     L"
BASE COUNT          676 a          731 c          700 g          706 t
ORIGIN      
        1 aagcttcctt ccacgttgga tccgaaggtt caatgtagac aagattgtca gtacccagtt
       61 cttctgagcg gactacattc tgcgagttag cttgtgtctc agtcggagga ttcgcggaat
      121 tagtttttga gcgccaggcc gcaaatctta aacgcgcagc tctgtgtcct tcgatgatcg
      181 cttgaatcac tcggaagtga tcccgaaacc aacggcccac gcgtccagta gctgattgtc
      241 tccactgaaa ctccggagtg ccacggaacg actcgtcgag aacaagttgg tcggcccggt
      301 aaacaaagta aggaacgtcc cgagctttct tgagtacttt cgagttgtca ctaatgtcat
      361 tgttggtagt gaccgcaagc aacacgatat cgggtgaata ctcccaaacg tgttcccgta
      421 gagttaatag ctcctgagca gttccatatc cggaaacgcc aaagttaatt acctcaatgt
      481 gtttttgagt agcactacat gagttgagac tcttgctcag caagaaccag aaggttgact
      541 cgagaggcac ttgcaacgct tcgacgtacg agtcgccgac aacagcgatt cgaattgtgt
      601 ctggtggttt tgtcttcgtg tgttcgagat cacgcaagcc gtcgctattg atccgaacaa
      661 agacatcgtt ttctttgcgg taccaaccgg acactccggg tcgcaaggca taaccacgtg
      721 aggcatcagt tacgtaaaac tcgggaaagt tgtagccaat cgctcgcaga cttatttcgg
      781 caagggcaag cccgaagatc acgccgaaca acatcaaccc caagcgtcga cgtcggtcgc
      841 gccactttgt cttagacatt aagccgcttt catcaatcct tttgcgagtc agctagcagg
      901 agctacctta agagaattga ggctaatgat caaaatggcg ggatcaaaat gttagagccc
      961 ggatgtgctc tccccttcac atccgggccc ccacaaggcc actcatctta caatgtgtga
     1021 ccgaactgtt tgagacttta gtagcggtac ttgtctcgaa tcttgtatgt atagagcgct
     1081 gcggttccgc ctcctgcaat ggctcctaca atcgcgccac gcttgccacc aatcatgctg
     1141 ccaataattg ctccacctcc cgcgcctgct gctgtagtta ttttgtcgcg cgagcggtcc
     1201 caaattgacc tgttgtcacc gtagtagcca tagtcgccag attgcggatc ggtggagaca
     1261 ctgtttccgt agccaccgtt gctaaagact tgattgttgt aaacaccggt ctgatagcta
     1321 ttgtttcgat aaacttgatt gttgtatccg cgactactgc tgtgatcgta acgcctgtta
     1381 gaactcgttt gcctgttcgc gcatcgtgcc cgcgtctgcg ctccaacgga aatcgctgca
     1441 aaactcagtg ctaacaaaca agcgatactc agcgagattc tcttcatcct tgttctcctc
     1501 cgctttcatc tttggcaatg accatgccaa actcgactta atcttcactt tcgcgatttt
     1561 cttggtttct ttggagtctt aatcgccgaa gcactgaggc ggattggtgg gtctcaacgt
     1621 ttccgtgtgc ccatggttta caacactgac cttttggggt attcagagac tcacactcaa
     1681 atgaacagcc aaaactcatg acccaagacc cccaaaatgt actggttctc aattcaactg
     1741 aaataaaact attgctaccc atgcaggaat gcatcgagat catgagcgat gcactgcagg
     1801 acttgtcacg tggcgaagtg attcagccgc ttcgaatggt tgtaagaccg cccgacgcaa
     1861 aaggtgtgat ggcaatgatg cctgcgtatc gtcgtggcga tgagagtgta ttcggcctca
     1921 aagcgatctg tttttttcac ggcaatccag cgtttggaaa agatgctcac cagggatgcg
     1981 ttctgctttc aagcggtgag accggtgagc ttcgagcaat tatgaatgcc tcaacgataa
     2041 ccgagttacg caccgccgca gtttcagccg ttgccaccag gctgctttca cgctctgacg
     2101 ctagcaacct cgctatcgtc ggcgccggag ttcaggcacg tgctcacttg gtcgcattat
     2161 ccagcgttag gaacatacga agagctcgtg ttgttagcct taatcccaat cggccaaaac
     2221 aacttgccga ggaaatgcgt aatactcttc cgtttccgat tgagccggtt tccagcgttc
     2281 aagaagcttt ggaaggtgcg gacatcgtcg taacagcgac gagtgcacgc caacccgtaa
     2341 tcaagcgcga gtggatctca gcaggtgcgc acatcaacgg catcggcacc tactctccac
     2401 aagctcgaga gatcgacagt gcaacaatgg cgtcgtcacg catcttcgtg gatcgactcg
     2461 agtcggcgct gaacgaagcc ggggattatt tattggcggc cgaggaaggc ttgataggac
     2521 cggagaacat cgttgccgaa atcggcgagg tgttacttgg tcaaaagcaa ggtcggacct
     2581 caaacgacga aatcacttta ttcaagtcgc tcggtctggc agtcgaagac atggcctgtg
     2641 cggagtatct cttcaggaaa gcgcaatctg aaaatattgg tacctggatt aagttcaatc
     2701 tgtgaagttt gaaatcttca tccggggtat cgaggtcagc accacattcg gaagcgtgtg
     2761 gcttcaccaa gtagcgtggc tcgttgcggc tttgccgctt cccgtgcgga atg
//
LOCUS       DATCGC010000453         1943 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_9314, whole genome shotgun sequence.
ACCESSION   DATCGC010000453 DATCGC010000000
VERSION     DATCGC010000453.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1943)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1943)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1943
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9314"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1943)
                     /locus_tag="VIJ87_04345"
     CDS             complement(<1..>1943)
                     /locus_tag="VIJ87_04345"
                     /inference="COORDINATES: protein motif:HMM:NF025152.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4175 family protein"
                     /protein_id="HEY5443697.1"
                     /translation="LARLIEERSPGTDDRLVSAVEYSNADLRRNISPAIVNRLYSDAN
                     NASANVNIGEVIRRSRLLTYGGAALTSLLIFAAVLKWGPREISEGVAQLVTPTTFAAS
                     THAMSIKVKPGTSRVPKGSDQDIIATLVNFDSQTVTVYARPLGSKNDWQGQPMEPAKA
                     RSDFRFSIFNIQDSMEYFVESNTIRSDVFKLNVVDLPFVKQLDLNLNFPAFTHLPSKL
                     VEDGGDIAALKGTVAMITAHLSGKVRAARIVFPDGKKSEMKLQGSDFVGDLTVTADTS
                     YYIELVSTDGETYRGSNEYDVTILQDQPPSISFDKPGRDKKATNLEEVFTQARAEDDY
                     GVVSMDLHFSVNGGEEKSVNLQQLTRESARTLTGAYTFFLEEYKLKPGDFISYYAKAR
                     DANNETSSDIYFIEVKPFEMEYKQAQQQSGQGGGQGGDQDQNALSRRQKDLIAATHRL
                     IREGDKYSPQERKDGYEAVAAGQEKLRTDTLEFLDRMGRRLGGDTQKQMLEIAEKLTK
                     AAKEMEDAPPPLRKETGKDALPPEQRALQNLLAADSIFREVQVAFGNQSSGGQGGNSE
                     RQQQELAGLFELELDKMKNQYETVQRAQQQQAQQEKSEAERRLEELARRQQQALDEQR
                     RRMGQPANGSNGGNQRQQQELID"
BASE COUNT          409 a          516 c          505 g          513 t
ORIGIN      
        1 gtcaatcaac tcctgctgct gacgttgatt tccaccgttc gaaccatttg ccggttgacc
       61 catccgtcgt cgctgttcgt cgagtgcttg ctgttgacgg cgcgcaagtt cttccagccg
      121 tcgctcagct tccgactttt cctgttgagc ctgctgctgc tgagcgcgtt gaaccgtctc
      181 atactggttc ttcatcttgt cgagctcaag ctcaaaaagt ccggcgagtt cctgctgttg
      241 acgctcggag ttaccaccct gaccaccact actctggtta ccgaatgcga cctggacttc
      301 acggaaaatc gaatccgctg ccagtaggtt ttgcaaagcc cgctgttcag gcggcaacgc
      361 atctttgccc gtttctttgc gcaacggagg aggcgcgtct tccatttctt tagcggcctt
      421 ggtgagcttc tcggcaatct caagcatttg tttttgcgta tcaccaccga gacgtcggcc
      481 cattcgatcg agaaactcca aagtgtcagt tcgaagtttt tcttgaccag cggccacggc
      541 ttcgtatcca tcttttcttt cctgtggaga gtatttgtcg ccctcacgaa tcagccggtg
      601 agtggcagca attaaatctt tttggcgacg cgacagggcg ttctgatcct ggtcgccgcc
      661 ctgacctcca ccctggccgc tttgttgttg ggcctgcttg tactccatct cgaagggttt
      721 tacttcgatg aagtaaatgt cgctcgatgt ttcgttgttt gcgtcgcgcg ccttggcgta
      781 atacgaaatg aaatcaccag gcttgagttt gtattcctcg agaaagaacg tataagcgcc
      841 ggttagagta cgcgcagact cgcgtgttag ctgctgaagg ttgacgctct tctcctcgcc
      901 gccattcaca gagaaatgca aatccataga aacgacgcca tagtcgtctt ctgcacgtgc
      961 ttgggtaaac acttcttcga gattggtggc cttcttgtcc cggcccggct tgtcaaacga
     1021 gatactggga ggctggtcct ggagaatggt cacgtcgtat tcgtttgagc cgcgatacgt
     1081 ttcaccgtca gtgcttacga gttcaatgta gtaactggtg tcagccgtga ctgtcagatc
     1141 gcccacgaag tcggaaccct gcaacttcat ctcgctcttc ttgccatcgg gaaaaacgat
     1201 gcgggcagcg cgcacctttc cagacaagtg agcagtaatc atcgcaactg tgccctttag
     1261 ggcggcaatg tctccaccgt cttcgacaag tttgcttggg agatgagtga aggcggggaa
     1321 gttcagattc aaatccaact gtttgacgaa gggcagatct actacgttga gtttgaacac
     1381 gtcagaccgg atcgtgtttg actcaacaaa gtattccatc gaatcctgga tattgaagat
     1441 cgagaaacga aaatcgctgc gcgctttcgc gggttccata ggttgacctt gccagtcatt
     1501 ctttgaaccc aggggacgcg catagacggt tactgtttgg gagtcgaagt taaccaacgt
     1561 agcaatgatg tcctggtccg atcctttcgg aacacgcgaa gtccccggct taactttgat
     1621 gctcatcgca tgagtcgacg cggcgaaggt cgttggcgtt acgagttgtg cgactccttc
     1681 ggatatttca cgtggtcccc atttcaacac tgctgcgaag atgagaaggc tggtcagcgc
     1741 agctccgcca taggtgagta gtcgagaacg tcgaataacc tcgccaatat tcacatttgc
     1801 cgaggcgttg ttcgcgtcag aatagagacg attgacgata gccggtgaaa tattgcgacg
     1861 aaggtccgcg tttgaatatt caactgcgga taccaggcga tcatctgttc ccggcgaacg
     1921 ttcctcgatc aaacgagcga gcc
//
LOCUS       DATCGC010000454         1257 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_106202, whole genome shotgun sequence.
ACCESSION   DATCGC010000454 DATCGC010000000
VERSION     DATCGC010000454.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1257)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1257)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1257
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106202"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            86..>1257
                     /gene="rho"
                     /locus_tag="VIJ87_04350"
     CDS             86..>1257
                     /gene="rho"
                     /locus_tag="VIJ87_04350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017492510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0008186 - ATP-dependent activity, acting
                     on RNA [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HEY5443698.1"
                     /translation="MSISKLTSIAKSMDVPGATGMRKQELIFKVLAAQTEKSGLIFSE
                     GVLETLPDGFGFLRAPEYNYLPGPDDIYVSPSQIRKFDLRTGDTVSGQIRPPKEGERY
                     FALIKVEAINFESPDQAREKVFFDNLTPLYPEEQLKMEATTENLSARVIDLVTPLGKG
                     QRGLIVAPPRTGKTMLLQTIANSVTQNHPEVTLIVLLIDERPEEVTDMQRSVNGEVIS
                     STFDEPPTRHVQVADMVIEKAKRLVEHKRDVVILLDSITRLARAHNAVVPPSGKILSG
                     GIDSNALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDDVIFEEFKGTGNSEIHL
                     DRRLSDKRLFPAIDLQRSGTRKEELLISKEDLNRIWVMRRVLNPLSPVEQMEVVLER"
BASE COUNT          320 a          339 c          328 g          270 t
ORIGIN      
        1 cgctgaagct cctgatcgcg agcccggcga aggccggcct ggcaagaatg agggcggctt
       61 tcacaatctc gccgacttga aggagatgtc gatctccaag ctcacatcga ttgccaagag
      121 catggatgtt cccggcgcaa ccgggatgcg caagcaggag ctcatcttca aagtattggc
      181 tgcacagacc gagaagagcg gtctcatatt ctccgaaggt gtgctggaaa cactgcctga
      241 tggcttcggc tttttacgtg ctcctgagta caactatctg ccaggtcctg acgatatcta
      301 cgtttcacct tcacagatcc gaaaatttga tctgcgcacc ggcgatacag tcagcggaca
      361 gattcgtccg cctaaagaag gtgaacgtta cttcgcgctt atcaaagttg aagcaatcaa
      421 cttcgagtca cccgatcagg cacgagaaaa agttttcttc gacaatttga cgccgctgta
      481 tccggaagag cagctaaaaa tggaagcgac aaccgagaat ctgtcggctc gcgtcattga
      541 cctcgtaaca ccgctgggca aaggtcagcg tggtttgatc gtcgcaccgc cacgtactgg
      601 taagacgatg ttgctgcaaa cgatcgccaa ttcggtaact cagaatcatc cagaagtcac
      661 cctgatcgtt ctcctgatcg acgaacgacc tgaagaagtg actgacatgc aacgctcggt
      721 taatggcgaa gtcatttcat ccacattcga tgaaccgcca actcgccacg ttcaagttgc
      781 cgacatggtg atcgaaaaag caaaacgact tgtcgaacac aaacgcgacg tcgtcatcct
      841 gctcgattcg attacgcgtc tggcgcgtgc acacaacgcc gtcgtaccac ccagcggcaa
      901 gattctttcc ggcggtatcg attcaaacgc gttgcagcga ccaaagagat tcttcggtgc
      961 ggcgcgtaac atcgaggaag gcgggtcgct gaccattatc gccaccgcac tcatcgacac
     1021 gggctcgcgc atggacgatg tgattttcga agagttcaaa ggtactggta actctgaaat
     1081 tcatctcgac aggcgtttga gcgacaagcg actgttccct gccatcgacc tgcaacgctc
     1141 aggaacacgc aaggaagaat tgctcatcag caaggaagac ttgaatcgta tttgggtgat
     1201 gcgacgggtg ttgaatccgc tgtcgcccgt tgagcagatg gaagtcgtgc tcgaacg
//
LOCUS       DATCGC010000455         1138 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_372477, whole genome shotgun sequence.
ACCESSION   DATCGC010000455 DATCGC010000000
VERSION     DATCGC010000455.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1138)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1138)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1138
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_372477"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(152..>1138)
                     /locus_tag="VIJ87_04355"
     CDS             complement(152..>1138)
                     /locus_tag="VIJ87_04355"
                     /inference="COORDINATES: protein motif:HMM:NF014893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEY5443699.1"
                     /translation="QNMQAICDAVQSGKGKLIGVACEKPLARNVAEARRMVELVEQSG
                     LLHGYLEDQIFAPSVTRGRQIMWSRAAALTGRPYLARAAEEHSGPHSPWFWQGELQGG
                     GVLNDMMCHSIEVARFMLTKPDAPRSSIRPVKVSAQIASLKWTRPKYIEALRHNMGPT
                     VDYLNKPAEDFARATVNYVDEENNPLIVEVTTSWSYVGAGLRLSLEVLGPEYSLAMNS
                     LDSGLKLFMSREVKGDAGEDLVEKQNAEQGLMPVLGNEAAEYGYESQNRYFVQCFLDG
                     QQPAENFHDGLEVTELLMTAYMSAEQERTIAFKPEGLDSYVPLVAQGLWKAR"
BASE COUNT          230 a          320 c          303 g          285 t
ORIGIN      
        1 tccgcttgtc gcccagggat tgtggaaagc gaggtagcac gaggcagtag cccgactgta
       61 aacgagggct cgtcggtttt ttggcagcga aacggagccc tcctttacag tcgggctacc
      121 gcctcgtgta cagtcgggct agtgcctcgt gctacctcgc tttccacaat ccctgggcga
      181 caagcggaac ataactgtcg agcccttctg gtttgaacgc gatcgtgcgt tcctgctcag
      241 cgctcatgta ggccgtcatc aaaagttcgg ttacctcgag tccgtcgtgg aagttctccg
      301 ccggctgttg gccgtccagg aaacactgca cgaagtatcg attttgcgat tcgtatccat
      361 actcagccgc ttcgttaccc aggacgggca ttaatccttg ctcagcattt tgtttttcga
      421 ccaggtcttc gcctgcatcg cctttcactt cacgactcat gaaaagtttg agtccgctgt
      481 cgagagagtt catcgcgagt gagtattccg gaccaaggac ttccaggctt aaacgcaagc
      541 ccgcaccgac atagctccag gaagtcgtta cttcgacgat cagaggattg ttctcttcat
      601 cgacatagtt cacagttgca cgggcgaagt cttcggcggg cttgttcagg tagtccactg
      661 ttggccccat gttgtgacga agcgcttcga tgtacttcgg acgtgtccac ttcaagcttg
      721 cgatctgcgc agacactttg acaggcctga tactcgaacg cggtgcatca ggctttgtga
      781 gcatgaaacg cgcgacctca atgctgtgac acatcatgtc gttgaggacg ccaccacctt
      841 gcagttctcc ttgccaaaac catggtgaat ggggaccgct gtgttcttcg gcggcgcgcg
      901 caagataagg ccgacctgtt aaggctgccg ctcgactcca catgatctgt cgtccgcgag
      961 taacgcttgg cgcgaatatt tggtcttcca ggtaaccgtg tagcagaccc gattgctcga
     1021 ctagttcaac catacgacgt gcttcagcga cattacgagc gagtggtttc tcacatgcga
     1081 cgccgatgag cttacctttg cctgactgaa ccgcgtcgca aatggcttgc atgttttg
//
LOCUS       DATCGC010000456         1704 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_206048, whole genome shotgun sequence.
ACCESSION   DATCGC010000456 DATCGC010000000
VERSION     DATCGC010000456.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1704
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_206048"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1704
                     /locus_tag="VIJ87_04360"
     rRNA            <1..>1704
                     /locus_tag="VIJ87_04360"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          463 a          380 c          513 g          348 t
ORIGIN      
        1 cgtggggttg tgggactccg atgtgggacc tcgacggata ggagaaggaa tctggaaagg
       61 accgccaaag agggtgatag ccccgtatcc gaaattctga gaggctctag gagtatcccg
      121 agtaccgcgg ggcacgtgca atctcgcggg aatctgggtg gaccgccatc caaggctaaa
      181 tacgttctcg cgaccgatag tgaactagta ccgcgaggga aaggtgaaaa gaacccctgt
      241 taggggagtg aaatagtacc tgaaaccata tgcctacaat gtgtaggagc tgccgcaagg
      301 cagtgactgc ttgccttttg cataatgagt ctgcgagtta ttgtccgtgg ccagcctaag
      361 cggtgatgcc gtggaggcga agggaaaccg agtgccaata gcgcgaccaa gtcgctggta
      421 atagacccga agcggaggtg atctactctt gagcaggttg aagctgaggt aacactcagt
      481 gaaggaccga actcgtggat gttgaaaaat cctgagatga cttgagagta ggagcgaaag
      541 actaatcaaa ccccgtgata gctggttctc tccgaaatcg cttgagggcg agtcttatgg
      601 aagtacccga cggaggtaga gcactgaatg gcttaggggc cccaccaggc tgccaaaacc
      661 aatcaaactc cgaattcctt ggatctcagt atcatagcaa tcaggcagtg ggcgataagg
      721 ttcattgccg agagggcaac agcccagacc atcagctaag gtgcctaaat gtgattaagt
      781 ggaaaggatg tgacgttgct tagacagtga ggatgttggc ttagaggcag ccatcattta
      841 aacagtgcgt aatagctgac tcatcgagcg atgtcgcgcc gaaaatgatt ggcgatcaaa
      901 tcacataccg aagctatgga ttcaattccg gttcgccgga attgagtggt aggagagcgt
      961 aatcagtgct gcgaagtaga acggaaacgg actatggagc gctgattagt gagaatgcag
     1021 acacgagtag cgataaacca ggtgagaatc ctggtcgccg taaacccaag gtttcctggg
     1081 ccaggttcgt cctcccaggg ttagccggga gctaacgcga ggccgtaagg cgtagcggat
     1141 gcacagcagg ttaaatattc ctgcgccggc tgggattaag gtagtgaagg acgcatggga
     1201 agacatcgac taggcaatcg aatgctgagc ttaggggcaa cccgaagcgc atcggtggag
     1261 aaggtgccta gaaaagtttg cagccgtttc cccagtcgcc cgtaccgtaa accgacacag
     1321 gtgggtgagt gtaagcgcac tcaggcgcgc gagagaaacc tctctaagga actcggcaca
     1381 ttagccccgt aacttcggga aaaggggtgc tcacttcggt gagtctcagt aaattgcgtt
     1441 tagcgactgt ttaacaaaaa cacagcactc tgctaagtcg tcaagacgac gtatagggtg
     1501 tgacacgtga ccaatgctga aagattaaga gatcttgtta gccgcaaggc gaagctcggt
     1561 ctttaagtcc cagtgaatgt cggccgtaac tataacggtc ctaaggtagc gaaattcctt
     1621 gtcgggtaag ttccgacctg cacgaatcgt gtaacgactg aacgactgtc tcggagagga
     1681 tctcggcgaa actgtaacgg cggt
//
LOCUS       DATCGC010000457         1651 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_472336, whole genome shotgun sequence.
ACCESSION   DATCGC010000457 DATCGC010000000
VERSION     DATCGC010000457.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1651)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1651)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1651
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_472336"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            248..1636
                     /locus_tag="VIJ87_04365"
     CDS             248..1636
                     /locus_tag="VIJ87_04365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443700.1"
                     /translation="MTRCSSQTSAFSITPTTVFFAGLIFLFTILFHTNTVHAQQPPPP
                     AAPSSGPPKPYEPPSLLSGGAFTSIEGRFTISLPQQGHGFSQLTIPTPFGIARGDSYQ
                     WRMKEAAFVVGHADAPVPVDSPEQAQKIFESLHEQIKKLANANNGAMREDKQIQLGKY
                     PGIEQRVDLFSAFVVQRTYVVSRRLYQAVMVIKTEQREFESAATKVLDSFKVLEESDV
                     SAKLAEEAKKAEPTPLPQQPVAQRSGTDATDDGMHGQVKTVLEESQDLSGTWSVQTKK
                     RDSFVQYNEQGNRVRQESYDYKGNLDEITVYGYIDRSRVSDFKMIDKEYNPPPGVIVA
                     PPGAVVKKSDPRYQTKFEFKYDEQKRLIEHRWFHSNGELFLRYVYKYNGAQLEELVYS
                     KDGSLNQRYVSKLDGKGNEIERISFDTRDNKPGAAYSFVYEFDAHGNWTKRTASKEGR
                     PQYVDFRTITYW"
BASE COUNT          453 a          406 c          422 g          370 t
ORIGIN      
        1 aaacgaggtt gcattttgct tactaggagt gccggtgaaa tacggaaaga ccatctctta
       61 gtagctttca ataaccaatt ccgttgtccc aacctgtgta cgaattgagg gcgtagccag
      121 atgtgggtgc gttatcggaa aggcggagtc attccgcacg gaagaccgcg aagccgagcg
      181 atgagtctca ggctgagaaa cgcacaagtg atgattactc gtttcttgat gctgtatcat
      241 cacgagcatg acacgttgtt caagccaaac gagtgcattc tcgataacgc caacaaccgt
      301 atttttcgcg ggcctaatct ttttattcac catcctgttc cacacaaaca ctgttcacgc
      361 acagcagcca ccgccgcccg ctgctccaag ttcaggtcca cccaaaccgt atgagcctcc
      421 gtcgctactc tcagggggtg ccttcacgtc catcgagggg cggttcacga tttctctacc
      481 acaacagggt catggcttct ctcaactcac gattccaact ccatttggta tcgctcgtgg
      541 cgattcttac caatggcgaa tgaaagaagc tgcattcgtc gttggtcacg cagatgctcc
      601 cgttcctgtc gactcgcctg agcaagccca aaaaattttt gaaagtctcc atgaacagat
      661 taagaaacta gcgaacgcga ataacggagc catgagagaa gacaaacaga ttcaacttgg
      721 caagtatccg gggattgaac aacgcgtcga cctcttttcc gccttcgtcg tccaacgcac
      781 ttacgtggtg tcgcgcaggc tgtaccaagc tgtaatggtg atcaagacag agcagcggga
      841 gtttgagagc gcagcgacaa aggtgttaga cagtttcaaa gtactggagg aatctgacgt
      901 atccgcgaag ctagctgaag aagccaaaaa agcagagcca actccattac cgcaacagcc
      961 agttgctcaa cgttcgggaa cagacgctac tgacgatggc atgcacggac aagtgaaaac
     1021 ggtactagag gagagtcagg atttgtcggg cacatggtcg gtgcaaacaa agaagcgcga
     1081 ctcgttcgtg cagtacaacg aacaaggtaa tcgcgttcgg caggagtcgt acgactacaa
     1141 gggcaatctc gatgagatca cggtctacgg atacatcgat cgtagtcgcg tctcagactt
     1201 caaaatgatt gacaaggaat acaatccgcc gcctggtgtg attgttgctc cacccggtgc
     1261 ggtagtgaag aagagtgatc ctcgatatca aaccaagttt gaattcaagt acgacgagca
     1321 gaaacgattg atcgagcacc gttggtttca cagtaatggc gagctctttc tgcgttacgt
     1381 ctacaaatac aatggcgctc aattggagga gttggtctat tcaaaggatg gttcactgaa
     1441 tcagcgttac gtttccaaac ttgatggcaa gggcaacgag attgagcgca tcagcttcga
     1501 cactcgcgac aataagcctg gtgcagctta ctccttcgtt tatgagtttg acgcacacgg
     1561 caattggacg aagcgaacgg cgtcgaaaga aggcaggcca cagtatgtcg acttcaggac
     1621 gataacgtat tggtaaataa acggctgaag g
//
LOCUS       DATCGC010000458         1804 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_472425, whole genome shotgun sequence.
ACCESSION   DATCGC010000458 DATCGC010000000
VERSION     DATCGC010000458.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1804)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1804)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1804
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_472425"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..483
                     /locus_tag="VIJ87_04370"
     CDS             <1..483
                     /locus_tag="VIJ87_04370"
                     /inference="COORDINATES: protein motif:HMM:NF021384.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2085 domain-containing protein"
                     /protein_id="HEY5443701.1"
                     /translation="ASATNHSQLAIAIYRPFGTFCHQLPERSFFIAGHPLAVCARCMG
                     LYGGFALLLVLYPLIRSLRSVALPPAKWLYLAAAPLFVDFSLTYLGIWENTHTSRLLT
                     GMLMGGVTVFYVMPGLVELAMRVSRKPQQKDPSPTFTFVSPEAIAAAPSDYSAPERRI
                     "
     gene            720..>1804
                     /locus_tag="VIJ87_04375"
     CDS             720..>1804
                     /locus_tag="VIJ87_04375"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY5443702.1"
                     /translation="MMFQSQPAAVPTPWPTPLGPGPEALFAKYFQDLVNKTWGNISPL
                     YRLDTFDWIILLAYFSILFVLAVYGAYRIKQVVDFWRYRKFIPEPAGKFAEEDLPRIT
                     VQLPLFNELYVVDRLLKAVTDIDYPREKLEIQVLDDSTDETVKVAEAVVAKYAEQGFD
                     ISYIHRTDRTGFKAGALENGNKFAKGELLAIFDADFVPKPDCLRKLVDFFTDPSVGCA
                     QMRWAHINGDYNLLTRLQTIMLDGHFVVEQTTRNRTGGFFNFNGTAGIWRRRAIEMSG
                     GWQHDTLTEDTDLSFRAQLMGWRFVYLLDEEAPAEIPVEINAFKAQQRRWAKGVMQVG
                     LKLYPRIWLAPLPLRVKLEMFFRLTGN"
BASE COUNT          413 a          475 c          462 g          454 t
ORIGIN      
        1 gcttcagcca caaaccactc gcagctggca atcgctatct atcgtccatt cggaaccttt
       61 tgtcaccaac tacccgagcg ttcatttttc atcgccggac atccgttggc cgtctgcgct
      121 cgttgcatgg gcttatacgg cggcttcgcg ttgttgctgg ttctataccc gttgattcga
      181 tctctgcgat ccgttgccct gccgcctgcg aagtggttgt atcttgccgc ggcgcccttg
      241 tttgtggatt tcagcctaac ctacctgggt atctgggaaa acactcatac gtcgcgacta
      301 ctgaccggaa tgttaatggg tggcgtgact gtgttttacg taatgccggg gctggtggaa
      361 ttggccatgc gggtatcgcg gaaacctcaa caaaaagacc ctagtccgac gttcactttc
      421 gtttcaccgg aagccattgc cgcagctccg agcgactaca gcgcgcctga gcgacgcatt
      481 tgatgtttag cttgtcgtgc gttaggaaac gaagccacca gctgagacaa cggcaagctg
      541 aggcatatcg gacatagcca tttcgcgata cgaatgacct taggttagaa tctcacacgc
      601 aaaatcggcc tggccggtga ataacaagca cttattaagg cgccgtctgg catctgctga
      661 cggcgttttc agtatcaaag ccacgcctga tttgccagtt tgaaagtgca gtcaaatata
      721 tgatgtttca gagtcagccc gccgcagtac caaccccctg gcctacaccg cttggccctg
      781 gacccgaagc ccttttcgcc aagtattttc aggatctcgt gaacaagacc tggggcaata
      841 tcagtcctct ttaccgcctt gatactttcg attggataat tcttctagcg tatttctcca
      901 ttcttttcgt gctcgcagtt tatggcgcat atcgcatcaa acaggtcgtt gatttctggc
      961 gctaccgaaa gtttattccg gaacctgccg gtaagtttgc tgaagaggac ttgccgcgaa
     1021 tcactgttca gctgcctctc tttaatgagt tgtacgtcgt cgatcgtttg ctgaaggccg
     1081 tcacagacat cgactacccc cgagagaaac tggagatcca ggtcctagac gactcaactg
     1141 acgaaacagt taaagtcgct gaagcggtgg tcgcaaaata tgcggaacaa ggtttcgaca
     1201 tcagttacat ccacagaact gaccgtactg gtttcaaagc cggagcgctt gagaacggaa
     1261 acaagtttgc caagggtgag ctgctggcaa tcttcgacgc cgactttgtt cccaagccag
     1321 actgcttacg caagctcgtc gacttcttta ctgatccgtc agtcggttgc gcgcaaatgc
     1381 gttgggctca catcaacgga gactataacc tcctaactcg actccaaacc atcatgctcg
     1441 acggccactt cgttgttgag cagacaacca gaaatcgcac cggtggattc ttcaacttca
     1501 acggcacggc tggaatctgg cgacgccggg cgattgagat gagtggtggt tggcaacacg
     1561 acacgttgac cgaagacacc gatcttagtt tccgagcgca gttgatgggt tggaggtttg
     1621 tgtacctcct ggatgaggaa gccccggcgg aaattccggt tgagataaac gctttcaaag
     1681 cgcagcagcg tcgctgggct aaaggcgtta tgcaagttgg attaaaactg tatccaagaa
     1741 tctggctggc accgttgccg ttgcgtgtga agttggaaat gtttttcaga ctgactggaa
     1801 acat
//
LOCUS       DATCGC010000459         1628 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_206200, whole genome shotgun sequence.
ACCESSION   DATCGC010000459 DATCGC010000000
VERSION     DATCGC010000459.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1628)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1628)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1628
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_206200"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(21..1409)
                     /gene="rseP"
                     /locus_tag="VIJ87_04380"
     CDS             complement(21..1409)
                     /gene="rseP"
                     /locus_tag="VIJ87_04380"
                     /inference="COORDINATES: protein motif:HMM:TIGR00054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HEY5443703.1"
                     /translation="MNFLIGPASFIFILGSAVVLHEFGHFIVAKLLGIRVETFSVGFG
                     PRLFGRKFGHTDYRVSAIPLGGYVKLGGDESNAPLEGEGAVDIPPNEMFNLRPRYQRI
                     MVALAGPVMNVLTAMAIPFTFAMIYGVPATPSPVVSYVTANGAADQAGLKLGDRIISF
                     NGTVNPTWDSISGDALLSPNQPLPVIVNRNGQEVSLTIKPAPRTENGETAGVLEFIPD
                     YGGLPVVVGDVNPGSPAEESGLQAGDRIATIGGENVRSAAQITEYIHSRDAQPIQMSV
                     ERNGQMTQITTVTRRLPGALLGIHISEQFPLHKVGIGTGVSYAYNQNMQILRLTGKAL
                     GQVFTGKRSVRNTLSGPIGIYKVASKSVERLGWDGLFGTLGFLSLNLGIFNLLPIPVL
                     DGGAIFLLLVEGVLALIGLTLSVAVRDRIQQVGFVMVLLLMVFVLTNDVLKSFSGKSS
                     EPEKPAATAPAK"
BASE COUNT          423 a          442 c          390 g          373 t
ORIGIN      
        1 ctggcgcatt cgaaatcgct ctactttgcc ggcgcagtcg cggctggttt ctcgggttca
       61 ctgctcttgc cgctgaaaga cttcagaaca tcgttggtga gtacgaacac cattaacagc
      121 aacaccatca caaaaccgac ttgctgaata cgatcgcgca cagcaactga caacgtcaga
      181 cctatgaggg ccagcactcc ttctaccagc aagaggaaga tcgccccgcc gtcaagcact
      241 ggaatcggca aaaggttgaa gatgcccaga ttcaaactca ggaatccgag tgttccaaac
      301 agtccgtccc aaccaagtct ttcgaccgac ttggaggcaa ctttatagat tccgatcgga
      361 cccgaaagag tatttctaac cgatctcttt cccgtgaaga cttgcccgag tgccttccct
      421 gtgagtcgca gaatctgcat attctggtta taggcgtaac ttaccccagt accaatcccg
      481 accttgtgaa gtggaaactg ctcactgatg tggatgccca aaagggctcc cggtagccgg
      541 cgcgtcacag tggtaatctg agtcatctga ccatttcgtt ccacgctcat ttggataggc
      601 tgcgcatcac gactgtgaat gtactccgta atctgcgcgg cgctgcgtac attctcccct
      661 ccaattgttg cgatacgatc gccggcttgc aaccctgatt cttcagctgg tgatccagga
      721 ttcacatcac ctacgacaac tggtaatccg ccatagtcgg gaatgaactc cagaacaccg
      781 gcagtctcac cattctccgt acggggagcc ggtttgatgg ttaacgaaac ctcttgtccg
      841 tttcgattga ctatcacggg taatggctgg ttcggcgaga gtaacgcatc gccactaatt
      901 gaatcccagg ttggattcac cgtgccgttg aaagaaatga ttcgatcgcc aagtttcaaa
      961 ccagcctgat ccgcggcgcc atttgcggtt acataactaa ctactggcga cggtgtagcg
     1021 ggaacgccat aaatcatcgc aaacgtgaaa ggtattgcca tcgccgtgag gacgttcata
     1081 acgggcccag ccaacgccac cataatccgc tggtaacgtg gtctcaggtt gaacatctcg
     1141 tttggcggaa tatcaacagc gccttcgcct tcgagtggcg cattggattc atctccacct
     1201 agttttacgt agcctcctag tggaattgcg gaaactcgat aatccgtgtg tccaaatttt
     1261 cttccgaaca ggcgaggacc gaatccgacc gagaacgtct caacccgaat acccaggagt
     1321 tttgcgacga tgaagtggcc gaattcgtga agcacaaccg cagaaccaag gatgaaaata
     1381 aacgaagctg gcccgatcaa aaaattcatt agaaatggct ctttctcaaa taattctcag
     1441 caaatcgacc tggttagaca catcacaaac ccaaataggt tgcacaaacg agtttacgcg
     1501 tcggcaaagg ttggcgtcaa acagttgatt tttgaaaagc tccggagtgc ggtggcctgg
     1561 caccgctttg taagagcgga tcgttcgaat ttaaaaaaag cggtgccagg ccactgcact
     1621 ccaaggag
//
LOCUS       DATCGC010000460         1004 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_173765, whole genome shotgun sequence.
ACCESSION   DATCGC010000460 DATCGC010000000
VERSION     DATCGC010000460.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1004)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1004
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_173765"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..293)
                     /locus_tag="VIJ87_04385"
     CDS             complement(<1..293)
                     /locus_tag="VIJ87_04385"
                     /inference="COORDINATES: protein motif:HMM:NF013854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA];
                     GO_process: GO:0009143 - nucleoside triphosphate catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="non-canonical purine NTP pyrophosphatase"
                     /protein_id="HEY5443704.1"
                     /translation="MPKAASSRRLVIATRNHGKLLEIRTLLGDIPWSLVTLDQFENVG
                     EAEENESTYVGNAVSKAKFYASATGEIVMADDSGLEVTALAGAPGVLSARYAGP"
     gene            complement(300..>1004)
                     /locus_tag="VIJ87_04390"
     CDS             complement(300..>1004)
                     /locus_tag="VIJ87_04390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443705.1"
                     /translation="PQTAWFSLNSAAATKLDAMSSMLFASLLKAGLSGYGIENPRDVL
                     GSMAPPVVTIRPVLGDGSLLLARVKDQEQLRRSLTSDLLREGKGQILTGSQSEPDKNR
                     EFAAVFLDGFVILGKTENVAVYLAQLRNGEMITTDHSNVLRSLEQKHSAAITTYTSER
                     ESLTTVVSALSLLNGHPLSEAELVEVRKRLNKFNVSFTESRLNSNGIERVSLSAFGQF
                     GNLLALAQADSSTPLP"
BASE COUNT          234 a          260 c          246 g          264 t
ORIGIN      
        1 ggtccagcat atctggctga caagacaccc ggtgctcctg ccaaggctgt gacctccaag
       61 cctgaatcgt cagccattac gatttcgccg gtcgcgctcg catagaattt agcttttgat
      121 accgcatttc cgacgtacgt actttcgttc tcctctgcct caccaacgtt ctcaaactgg
      181 tctagcgtaa cgaggctcca gggaatgtca ccaagtaaag ttcggatctc cagcagtttt
      241 ccatgattgc gggtggcgat tacgagccgt cgtgatgaag ctgctttggg caaggatctt
      301 tacgggagtg gagttgaact atcggcctgc gccaatgcta aaagatttcc gaactgtcca
      361 aatgcagaca ggcttactcg ctcaatgcca tttgaattaa ggcggctctc cgtaaatgac
      421 acattgaatt tgttcagtcg ctttctgact tcgacaagtt cggcctccga cagcgggtgg
      481 ccatttaaca gcgacaatgc gctgactaca gttgttagtg attctcgctc gcttgtgtag
      541 gtagtgatag ccgcggagtg tttttgttcc aggcttctta agacattcga atggtccgtg
      601 gttatcattt ccccgtttcg cagttgagca agatagacgg caacattttc ggtctttcca
      661 agaattacaa aaccatcgag aaacacagcg gcaaactcac ggttcttatc aggctctgat
      721 tgactcccgg taagaatctg acctttgcct tctctgagga gatcgctcgt aaggcttcga
      781 cgaagttgtt cctgatcttt cacacgtgcc aaaaggagtg agccgtctcc taacacggga
      841 cgaatggtaa ccaccggtgg cgccatacta cctagtacat ccctgggatt ctcaatgcca
      901 taacctgaaa ggccggcttt gagcagcgac gcgaagagca tactcgacat tgcatcgagt
      961 tttgttgccg ctgctgaatt caacgagaac catgccgtct gagg
//
LOCUS       DATCGC010000461         1057 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_372644, whole genome shotgun sequence.
ACCESSION   DATCGC010000461 DATCGC010000000
VERSION     DATCGC010000461.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1057)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1057)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1057
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_372644"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(340..636)
                     /locus_tag="VIJ87_04395"
     CDS             complement(340..636)
                     /locus_tag="VIJ87_04395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443706.1"
                     /translation="MDEISIRTQNSEYRFRVTDPIKCKGLLSGGLLGEVQHEASLCYE
                     VAAGYEVAAGDQQPQFSSRLEIGRCAFFYVYVRDKLRRLTTSEIQDVSLARNPE"
BASE COUNT          270 a          274 c          221 g          292 t
ORIGIN      
        1 gctgatggat agtcttcagt tcctctccgc taatgatgtt gccttgctcg tcgcgcacga
       61 tgtagtcaac agctgccgga ttgcaagact gagcactcac tgacgtcagc ggtaagaaca
      121 atactcccaa cagaaatccc aggactttga tcttgttatt catagtcgcc actcctgtaa
      181 acgcttgcga gggagattca acccaccaac tatattaact gagcagccct cttgaaaaaa
      241 cagtgtgtgc taaggccgcc ttgattgctg gtcgcgtcaa ttgaatctcg cagcattcat
      301 taattaagaa acatcacatc tccgacggag acgaaatcgc tactctggat ttcttgccaa
      361 tgaaacatct tgaatttcag acgtggttag gcgtctcaac ttatctctca cgtacacata
      421 gaaaaatgca caacgtccga tttcaagtct tgaggaaaac tgaggttgct gatcgcctgc
      481 agccacttcg tagcccgctg cgacctcgta gcagagagaa gcctcgtgtt gtacctctcc
      541 aagtaatcca ccactaagaa gtcccttgca cttgattgga tcagtcacac ggaacctgta
      601 ctcgctgttt tgagttcgga tggagatttc atccatttgc ttcaagtcct tcacggtaat
      661 ccacattgct gctcgccttt ggtcttcatt tatcgataat tggcgaagag tttcgacagc
      721 tcacaaatga gagtcgttca ctcgaactga ttcatcttgc atcgtccctc actgcctgac
      781 cttccaacgc aaagaagctc actaccaaca gtactaatag gattcggatg ttcggtttca
      841 tttccttcac ggcgcttcct ttcgttatct ggttcttagt taaaacatct ctgttcggct
      901 aaattcttga cccatcaata agtggcgaag agttggaaaa catcacggca agtccagcaa
      961 acagcgaaaa tcccacacac ggcagtgtgt ggattggttc aagtttcttc tagacgaggc
     1021 gcacccttaa tttttggcgc ctcgcgaagt gattctt
//
LOCUS       DATCGC010000462         1076 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_272691, whole genome shotgun sequence.
ACCESSION   DATCGC010000462 DATCGC010000000
VERSION     DATCGC010000462.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1076)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1076)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1076
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_272691"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(61..795)
                     /locus_tag="VIJ87_04400"
     CDS             complement(61..795)
                     /locus_tag="VIJ87_04400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443707.1"
                     /translation="MSAHLYLKFAFLIVSLGLFCSCSGVTRSSDNAAPNNQLVSSTPP
                     FKTKEPEHYQALRTITSTDSSGASSISKTLIARDGDLRREEIERESSHKIVILELEQG
                     RFVLLPDAKIYTESFAAVEEVKHDLNDSGGSPERLLHQEPIATSYQTIGSETIAGRST
                     TKYRIVVNISTSENVSRSETLMWIDENYGMPIRSETKTDDGSKQVMELTNITLSVDKS
                     LFRMPEGYEKVATFEFRRRLGKTESR"
     gene            complement(792..>1076)
                     /locus_tag="VIJ87_04405"
     CDS             complement(792..>1076)
                     /locus_tag="VIJ87_04405"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF014820.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HEY5443708.1"
                     /translation="LLGRQKLTLDDIDLIELNEAFAAQVIACDRELGFESDKLNVNGG
                     SIALGHPIGCTGVRITTTLLLEMERRKAKLGLATLCVSGGMGLAILVERV"
BASE COUNT          247 a          278 c          255 g          296 t
ORIGIN      
        1 cgattgaacc tcatttcgga tgccgtcgtt gccctggtgg gttgctactc atccctgagt
       61 ttagcgactc tcggtttttc cgagacggcg gcgaaattcg aaggttgcaa ccttttcata
      121 accttcgggc attctaaaaa gactcttgtc tacactcagc gtaatgttcg ttagttccat
      181 tacctgctta ctgccatcgt ccgtttttgt ttcagacctg attggcatcc cgtaattttc
      241 gtcaatccac ataagcgtct cactcctgct gacgttttcc gaagtcgaaa tgttaacaac
      301 gattcgatat ttggtggtac tacgacctgc gattgtttcg ctaccgatcg tttggtagct
      361 cgtggcgatc ggctcctggt gcaaaagtcg ttcaggagat ccgcctgagt cgttaaggtc
      421 gtgtttcacc tcttcaaccg cagcgaaaga ttccgtatag atctttgcgt ctggcaacaa
      481 gacaaatctt ccttgctcca actcaagaat aacgatcttg tgtgacgatt cgcgttcgat
      541 ttcttccctg cgcaagtcgc catcgcgagc tatcaacgtt ttgctgattg aagatgcgcc
      601 agatgaatcg gtggaagtga tcgtccgtag cgcctggtag tgttcaggtt ctttggtctt
      661 gaagggtgga gtcgaagaaa cgagctgatt gtttggagcc gcattatctg aggatcgtgt
      721 aacacctgag cacgaacaaa ataagccaag actgacgatc agaaatgcaa actttagata
      781 tagatgagcg ctcacactct ttccaccagg atcgccaaac ccataccgcc gctgacacag
      841 agagtcgcga gccccaactt agccttgcgc ctttccatct ccagtaagag cgtggtcgtg
      901 atacgcacac cagtgcatcc gatggggtgg cccagcgcaa tcgagccgcc atttacgttc
      961 agcttgtcgc tctcaaatcc gagttcgcga tcgcaagcaa taacctgtgc tgcaaaggct
     1021 tcgttgagct cgattagatc gatgtcatca agagtcagtt tttgtcgtcc caacaa
//
LOCUS       DATCGC010000463         1003 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_307678, whole genome shotgun sequence.
ACCESSION   DATCGC010000463 DATCGC010000000
VERSION     DATCGC010000463.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307678"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..763)
                     /gene="dnaG"
                     /locus_tag="VIJ87_04410"
     CDS             complement(<1..763)
                     /gene="dnaG"
                     /locus_tag="VIJ87_04410"
                     /inference="COORDINATES: protein motif:HMM:TIGR01391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of RNA
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEY5443709.1"
                     /translation="MRYPDNFVDDLKRQADIVRIIQDYVQLKKKGANWMACCPFHKEK
                     TPSFSVSPSKGIFYCFGCHKGGDVFNFVKEVEGLDFGEAIKVVADKIGMPLPKMVDDE
                     RFAVKRQESDEVIQLNNWALEWWAQQLETSGEARIARDYLDGREITEETKKTFRLGYS
                     PDSWDALSSYLRHKGATQPQIERSGLVVKRDDGKTYDRFRGRLMFPVFDAQGRPIAFG
                     GRTLKDEDAKYINSPETAAYVKGRNLYGLNLTRDEI"
     gene            complement(771..>1003)
                     /locus_tag="VIJ87_04415"
     CDS             complement(771..>1003)
                     /locus_tag="VIJ87_04415"
                     /inference="COORDINATES: protein motif:HMM:NF013844.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Smr/MutS family protein"
                     /protein_id="HEY5443710.1"
                     /translation="NVIGQTTDEAVDAVDKFLDEASLASLSKVRIVHGHGTGALRRAI
                     GDLLKGHPHVSRFLAAPPDQGGAGATLVELRQ"
BASE COUNT          238 a          273 c          233 g          259 t
ORIGIN      
        1 gaatttcgtc cctggtgagg ttcaagccat aaaggtttcg cccttttaca taagctgcgg
       61 tttcgggaga gttgatgtat ttcgcatcct cgtctttaag tgttcttcca ccaaacgcga
      121 ttgggcgacc ctgtgcgtcg aagaccggaa acatcaatcg accccggaag cgatcgtaag
      181 tcttaccgtc gtctcgtttc accacgagtc cgctgcgctc aatctgcggt tgcgttgcac
      241 ccttgtgacg gagataagaa gacagtgcgt cccaactatc cggggaataa ccgagtcgaa
      301 atgttttctt tgtttcttca gttatctctc gcccatctaa atagtcgcga gcaattcggg
      361 cttcgccact cgtctcgagt tgttgtgccc accattccag cgcccaattg ttgagctgga
      421 taacttcatc ggactcctga cgtttgactg cgaagcgctc atcgtcaacc atctttggca
      481 agggcatgcc gatcttatcg gcaactacct tgatggcctc accaaaatca aggccttcga
      541 cttccttaac aaagttgaag acatctccgc ctttgtggca gccaaaacag tagaagattc
      601 ctttggaagg actgacggaa aacgacgggg ttttctcttt atgaaacggg caacacgcca
      661 tccagttcgc acccttcttc ttgagttgga cgtagtcctg gatgatgcga acgatgtctg
      721 cctgacgctt taaatcgtct acgaaattat ctgggtaccg catgggggag ttattgtctc
      781 aactcaacaa gtgttgcacc agcgccgccc tgatcgggag gggcagctaa gaaacgagag
      841 acgtgaggat gaccttttaa caaatcgcca atcgcccgtc gcaaggcacc ggttccatgt
      901 ccgtgcacta ttcgcacctt actcaaacta gcaagcgacg cctcatcgag aaacttatca
      961 actgcatcaa cagcttcatc cgtcgtttga ccaatcacat tta
//
LOCUS       DATCGC010000464         1509 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_139835, whole genome shotgun sequence.
ACCESSION   DATCGC010000464 DATCGC010000000
VERSION     DATCGC010000464.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1509
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_139835"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            136..453
                     /gene="cutA"
                     /locus_tag="VIJ87_04420"
     CDS             136..453
                     /gene="cutA"
                     /locus_tag="VIJ87_04420"
                     /inference="COORDINATES: protein motif:HMM:NF015077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010038 - response to metal ion [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="divalent-cation tolerance protein CutA"
                     /protein_id="HEY5443711.1"
                     /translation="MAAEAIIVFLTTPNREEATRLADMLVGAHLAACVQVLPEIESIY
                     RWEGKIERQSETLLLAKTTREKFDELERNVRAVHSYETPEILAVSASAVSEPYLKWLS
                     DML"
     gene            complement(600..1349)
                     /locus_tag="VIJ87_04425"
     CDS             complement(600..1349)
                     /locus_tag="VIJ87_04425"
                     /inference="COORDINATES: protein motif:HMM:TIGR00730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HEY5443712.1"
                     /translation="MADDQQKTHPPGTTQDEQLLESPRPDEFTHTDTWRVFRIMGEFV
                     EGFDELATLNRGISIFGSARSKPNDPDYKAAQETAALLAKEGFAVITGGGPGIMEAAN
                     RGAFEAGGLSIGCNIELPFEQRPNPYQTRSLTFKYFFVRKMMFVKYSLGFVIFPGGFG
                     TFDELFEALTLIQTKKIRDFPVVLFGSSYWSGLLNWIRDVVLVDGKIGDHDLKLFHVT
                     DSPEEVVKIVTSSQSALTADKLVSDEIRLPG"
     gene            complement(1361..>1509)
                     /locus_tag="VIJ87_04430"
     CDS             complement(1361..>1509)
                     /locus_tag="VIJ87_04430"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY5443713.1"
                     /translation="HHAARAPLRRNVEAREVGNTAVFLCSQMSSAITGEVIYVDCGYS
                     IMGI"
BASE COUNT          381 a          389 c          368 g          371 t
ORIGIN      
        1 cagatgaata cagatcagaa tttagtattt agagcgagac ccactcaggt ctatcacccc
       61 gatctgcgct catccgcgtg aatctgctca actcccttcg aaaacgacaa gctgaagcat
      121 atcggacata agatcatggc ggcggaagcg ataatagttt tcctgacaac tcccaaccgc
      181 gaggaagcga ctcgtcttgc ggacatgctt gtaggcgctc accttgctgc gtgtgtccag
      241 gtcctacctg aaatcgaatc tatttatcgt tgggaaggaa agattgaacg gcagtcagaa
      301 acgttgctgc tggcgaaaac aactcgtgaa aagtttgatg agttggaacg gaatgtaaga
      361 gcagtgcaca gttacgagac gcctgagatc ttggccgtgt ctgcgtcagc agtttcagaa
      421 ccatatctga agtggttgtc cgatatgctt tagcttgaat ataggcacag attttcacag
      481 ataagaacag atcagaatta gtatttagac agcgaggctc gctcaagtct attccactta
      541 tctgtgttca tctgcggcta aattcttttc ggaaacgaca agctaaagca tatcggacat
      601 taccccggaa gcctgatctc gtccgaaaca agcttgtcgg ctgtcagcgc actttgactg
      661 ctcgtaacga tcttcactac ctcttccgga gaatccgtca cgtgaaacaa cttcagatcg
      721 tggtcaccga tcttcccatc cactaacacg acatcgcgta tccaattcaa gaggccggac
      781 caatagcttg atccgaatag cacgaccgga aagtctcgaa tcttctttgt ttgaatcagt
      841 gtcagcgctt caaagagttc gtcgaaagta ccgaaaccac cagggaagat gacgaagccg
      901 aggctgtact tcacgaacat catcttgcga acgaagaagt atttgaaagt cagactcctt
      961 gtttgataag gattgggtcg ctgttcgaac ggcaactcaa tattgcaccc aatcgagaga
     1021 ccgcctgctt cgaatgcacc gcgattagct gcctccataa tccccgggcc accgccggtg
     1081 attacggcaa acccttcctt cgctaacaac gccgctgttt cctgggcggc tttgtagtca
     1141 gggtcattgg gctttgagcg tgccgaacca aagatcgata taccacggtt cagagtcgca
     1201 agttcgtcga acccttcgac gaattctccc atgatgcgaa acactcgcca cgtgtcggtg
     1261 tgcgtgaact catctggacg agggctttcg agtagttgct cgtcctgcgt ggttcccggt
     1321 ggatgcgttt tttgttggtc gtccgccata gtgtgtgaaa ctaaatgccc atgatgctgt
     1381 agccgcaatc aacgtaaatc acttcgcccg taatggcgga cgacatctga ctgcaaagga
     1441 agacagcggt gtttccaacc tcccgcgctt ctacgtttct tcttaacggg gcgcgcgcgg
     1501 cgtgatgct
//
LOCUS       DATCGC010000465         1453 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_307705, whole genome shotgun sequence.
ACCESSION   DATCGC010000465 DATCGC010000000
VERSION     DATCGC010000465.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1453)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1453)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1453
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307705"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1230
                     /locus_tag="VIJ87_04435"
     CDS             <1..1230
                     /locus_tag="VIJ87_04435"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY5443714.1"
                     /translation="AGGMVFVGTNNEGVRDPKITGDKGVLMAFRESDGAFMWQMVHDK
                     LVAGRVNDWPYQGIASSPLVDGDRIYYVSNRAELMCLDTQGFRDKENDGPVTDEKLTG
                     EFNADIVWRFDMMEEVGSLPHNLANSSPVIDGDLIFVSTSNGQDESHVNIPSPKAPAI
                     IAVNKKTGKLVWEDNSVENRILHGQWSSPTVGTIDGVRQLVHAQGDGWIRGYEAQTGK
                     KLWEFDTNPKDSVWPKTRNELISTPVVYENRVYIANGQDPEHGEGVGHMYCIDATKRG
                     DITTTGLVWHYDKIRRSISTPAIKDGIVYESDFSGFLHALDAKTGQVYWTHDLFAAVW
                     GSPMLVDGKLYLGDEDGDVVIMQEGKTKKVIAEINMGSSVYSSAVPAHGVLFISNRNQ
                     LIALAETPAAKPTPATP"
     gene            1269..>1453
                     /locus_tag="VIJ87_04440"
     CDS             1269..>1453
                     /locus_tag="VIJ87_04440"
                     /EC_number="1.1.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF012678.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HEY5443715.1"
                     /translation="MISNFDFQLRTRAIFGAGAIERLGDLSRELGFKRTLLVADLGLV
                     SSGHVAEALAPLRNSGI"
BASE COUNT          349 a          369 c          405 g          330 t
ORIGIN      
        1 gccggtggca tggtgttcgt cggcacgaac aacgaaggag tgcgcgatcc gaagatcact
       61 ggcgacaagg gcgtgttgat ggcgtttcgc gagtcagacg gcgccttcat gtggcagatg
      121 gtccacgaca aacttgttgc cggtcgggtc aatgattggc cgtatcaagg tattgcttca
      181 tcgccgctcg ttgatggtga tcgcatttac tacgtctcga atcgcgcaga attgatgtgt
      241 ctcgacaccc agggttttcg cgacaaggaa aatgatggtc cggtcaccga tgaaaaactg
      301 accggtgagt tcaacgccga tatcgtctgg cgtttcgaca tgatggagga agtggggtcg
      361 ctgccacata atcttgcgaa ctcgtcacca gttattgatg gcgacctgat ctttgtcagt
      421 acgtcaaacg gtcaggacga aagtcacgtc aatattcctt ctccaaaggc acccgcaatc
      481 attgctgtta acaagaagac tggaaaactg gtttgggaag acaactcggt cgagaaccgc
      541 attcttcacg gacagtggag ctcgccgacg gttgggacga tcgatggcgt ccgtcaattg
      601 gtgcatgcac agggagacgg ttggattcgc ggatatgaag cgcagaccgg caaaaagctt
      661 tgggagtttg atacgaatcc taaagactca gtctggccaa aaaccaggaa cgaattgatc
      721 agcacaccag tggtctacga aaaccgggtc tacattgcca acggccaaga tcccgaacac
      781 ggagaaggcg tcggtcacat gtactgcatc gacgcaacca agcgcggcga catcacaaca
      841 acgggattgg tttggcacta cgacaagatc cgtcgctcga tctctactcc cgcgatcaag
      901 gatggcattg tttacgaatc tgacttcagc ggcttcctcc atgcactgga cgcaaagaca
      961 ggccaggttt attggacaca cgatttgttc gcagcagttt ggggttcacc gatgctcgtt
     1021 gacggaaaac tgtatcttgg cgacgaagat ggcgacgttg tgatcatgca ggaaggcaag
     1081 acgaagaaag tgattgccga gatcaatatg ggcagctctg tttactcgag cgcggttccc
     1141 gctcatggtg tgctgttcat ttcaaatcgg aaccagttaa ttgcattggc tgagactccc
     1201 gcagccaaac ctactcccgc aacgccatag tcccaatgtg agcgatagcg accgctctca
     1261 ctccaatcat gatatccaac ttcgactttc aacttcgcac tcgcgcgatt ttcggcgcgg
     1321 gtgcgatcga gcgtcttggc gacttgagcc gagagttggg attcaaacgt acgttactcg
     1381 ttgcggatct cggcctggtc agctctggtc acgttgctga ggctttggcg ccgctccgaa
     1441 actccggtat cga
//
LOCUS       DATCGC010000466         1219 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_272748, whole genome shotgun sequence.
ACCESSION   DATCGC010000466 DATCGC010000000
VERSION     DATCGC010000466.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1219)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1219)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1219
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_272748"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            32..>1219
                     /locus_tag="VIJ87_04445"
     CDS             32..>1219
                     /locus_tag="VIJ87_04445"
                     /inference="COORDINATES: protein motif:HMM:NF017390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M56 family metallopeptidase"
                     /protein_id="HEY5443716.1"
                     /translation="MRTLSDTLLFIAGSPALTIILKTTFVLALGLMSVWATNSARAAV
                     RHLLLACTFAALLALPVASFFVPSFRLELEGVAQTNPAQPTVMAPLNVSAESNRASTL
                     RGSTLNGTSSFKPSLKTIIYFVWGLGAGLLLLRLVISLFRLRTTRRSAIPSLELTAKL
                     RELAGEVGIRRTIEVLVHDDVEAPFTYGLLRPAILLPNDAATWSELNSRRVLIHELEH
                     IKRGDWITQLMARAVCAFYWFQPLVWIAWRQICLEAERSCDDAVVMRTEHTDYAEQLV
                     GLARSLSNTLPPPVLSMANRSDLSRRISSILDSKQARGRAGLHWTVSVLACSSVVIFA
                     VAPGLAITQTQKPTKPVQIDSVRQTTDAKTAALNEALLKACDSGKLNDIEQLLSAGAE
                     VNGV"
BASE COUNT          273 a          315 c          326 g          305 t
ORIGIN      
        1 aacgtattcg gaaggaaagg aagcgatagt gatgcgaacc ctgtcagata ctttgctatt
       61 tatcgccggc tccccagcat tgacgattat tctaaaaacc acttttgtcc ttgccctggg
      121 actaatgagc gtttgggcca caaactcggc tcgcgctgct gtgagacacc tgctgttagc
      181 atgcactttc gctgcactgc tggcgttgcc tgtcgcgtcg ttcttcgtgc cttcgtttcg
      241 cctcgaactg gaaggagtgg cacaaacaaa tccggcccaa ccaaccgtta tggcgccact
      301 aaacgtttcc gccgagagta atcgagcatc aacactgcgc ggttcgactt tgaacggcac
      361 atcgtctttt aaaccttcac tcaaaacgat catctacttt gtgtggggac taggagcggg
      421 gttattgctt ctgcgattgg tcatttcctt gtttcgcttg cgaaccacac gtcggagcgc
      481 gattccgtcg ttggaactca ccgcaaaatt gcgcgagttg gctggtgagg ttggcatcag
      541 acgaacaatc gaggtcctcg ttcacgacga tgtcgaggcg ccattcacgt atggcctatt
      601 gcggcccgca atactacttc caaatgacgc agccacctgg agtgaactta attcgcgccg
      661 agttctaatt catgagttgg aacacatcaa gcgaggtgat tggattactc agctcatggc
      721 gcgcgctgtg tgtgcgttct actggtttca acctctggtc tggatcgcgt ggcgacagat
      781 ttgtctcgaa gcagaacgat catgcgacga tgctgtcgtg atgcgaaccg aacacacaga
      841 ttatgcggag cagttggttg gacttgcacg tagtttgtcg aatacgttgc cgccgcccgt
      901 attgtcgatg gccaatcgaa gcgatttgtc gcggcgcatt tcttcgattc tcgatagcaa
      961 acaggcacga ggaagagcgg ggctacattg gaccgtttcc gtgctggcgt gttcctcggt
     1021 agtaatcttt gctgtggcac ctggtttagc gattacgcaa actcaaaagc caacgaagcc
     1081 cgtacagatc gatagtgtgc ggcaaacaac cgatgcgaag accgctgcat tgaatgaagc
     1141 tctgctcaaa gcctgtgact ctggcaagct gaatgacatc gaacaactcc tgtccgccgg
     1201 tgcagaggtc aatggtgtg
//
LOCUS       DATCGC010000467         1744 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_40382, whole genome shotgun sequence.
ACCESSION   DATCGC010000467 DATCGC010000000
VERSION     DATCGC010000467.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1744)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40382"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..475
                     /locus_tag="VIJ87_04450"
     CDS             <1..475
                     /locus_tag="VIJ87_04450"
                     /inference="COORDINATES: protein motif:HMM:NF021254.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="exosortase/archaeosortase family protein"
                     /protein_id="HEY5443717.1"
                     /translation="TRKLEVVEACSGIRSLMTLLTLAVVFAYFTHPRPKSDGQSSSFF
                     SPLGSYGFWRSTILVASAIPIAVITNAGRVSGTGILSHYYGTQVADGFFHSFSGWAIY
                     VVAFLMLFGVGWILDRFKPKSLDKKGNEPIQKDEHPSRDKVVVPNKPIISAGSTE"
     gene            475..1119
                     /locus_tag="VIJ87_04455"
     CDS             475..1119
                     /locus_tag="VIJ87_04455"
                     /inference="COORDINATES: protein motif:HMM:NF023410.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EpsI family protein"
                     /protein_id="HEY5443718.1"
                     /translation="MNSTMRLALLFVLILAGGTLVNGWAFLGEKPVERKALKEFPEEI
                     GAWRKSGNDQTLDDATLKVLRASDYLLREFRTSDGHVANFYVGYYATQSDGSSYHSPL
                     NCLPGSGWTLSEPGQVTFTDAAGHSITVNKYIIQNGDYKSLMLYWYQGRGRAVASEYW
                     GKIYTVVDSVRLRRSDGAMVRVTVPIRGSEADAERSATDLAVAATRPLPEFVPN"
     gene            1294..>1744
                     /locus_tag="VIJ87_04460"
     CDS             1294..>1744
                     /locus_tag="VIJ87_04460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443719.1"
                     /translation="MNSECRGYLYYPTFLCLLLAAVISLAGCSNPEKAKAEHLRKGEA
                     YLAEQKYQEASLEFRGALQLDDKLAAAHWGLARAYEALQRGPEMFEELRKTVALDPNN
                     LEARGRLGNYYLLASKSNPELIQMAEKLAKEILAKEPNNIEGHILMGS"
BASE COUNT          411 a          404 c          479 g          450 t
ORIGIN      
        1 cacgagaaaa cttgaggtag ttgaggcgtg cagtggtatc cgctcgctga tgaccttgct
       61 gacactggca gtcgtatttg cttatttcac ccatcccaga ccaaagagtg atggacaatc
      121 atcgtcgttc tttagtcctc ttggttctta tggtttttgg cgttctacaa tcttagtagc
      181 ctctgcaata cctattgccg ttattactaa cgctgggcgc gtgagtggca cgggcatcct
      241 gtcccactac tatggaactc aggtagctga cggtttcttt cattcgtttt caggttgggc
      301 catctacgtt gtagcctttt taatgttgtt tggagtcgga tggatcctgg accggttcaa
      361 gccaaaatcg ctggacaaaa aagggaacga gccaatccag aaggatgagc atccatcgcg
      421 tgacaaagta gttgtgccaa acaagccaat tatctccgcc gggagcacag aataatgaac
      481 tcaactatgc gcctcgcgct tctatttgtt ttgattcttg ccggcggcac cctggtgaac
      541 ggttgggcct ttctcggaga gaaaccagtc gagcgtaaag ctttgaagga gttccctgag
      601 gagattggcg cctggcgaaa gtcgggaaat gatcagactc ttgacgacgc tactcttaag
      661 gttttgcggg ccagtgatta ccttttgaga gagtttcgaa cgtcagacgg ccacgttgct
      721 aatttttacg ttggttacta tgcgacccaa agcgatgggt cgagctatca cagtccgttg
      781 aactgtttgc cgggttctgg ctggaccctg agtgaacccg gacaggtgac ctttaccgat
      841 gctgccggcc attcgattac cgtgaacaag tacataattc agaacggtga ttacaaaagc
      901 ctgatgctct actggtatca aggccgtggt cgagcggtcg caagcgagta ttggggcaag
      961 atttacacag ttgttgacag tgttcgcttg cgaaggtcgg atggtgcgat ggtgcgggtg
     1021 acggttccaa ttcgcggatc agaagctgat gccgagcgct cagctactga cttggcggtg
     1081 gcggcgacaa gaccgctacc tgaattcgtg cctaattgaa ttttttgaca atccagcttg
     1141 aaattgcgga agttggattg aattcagcgt tttcatattt tgtctcaggt ttttgaggtc
     1201 atcagatggc aattgcccgc cgagatgtcc tgtgaaacct gaaagactcg aatctgttgt
     1261 tgctttgagc agcaactagg gagcgaaaat agaatgaata gtgagtgccg cgggtacctt
     1321 tactacccaa cttttctttg tcttcttctg gcagccgtta tttccctggc tggctgcagt
     1381 aaccccgaaa aagcaaaagc cgaacacctt cgcaagggcg aagcctatct agctgagcag
     1441 aagtatcagg aagcgtctct tgaatttcgt ggcgcgcttc aacttgacga caagttggcc
     1501 gccgctcact ggggtctggc gcgcgcgtat gaagcgctgc agcgtggccc cgaaatgttc
     1561 gaggagttgc gcaagaccgt agcacttgat ccgaacaatc tcgaagcacg gggtcgacta
     1621 gggaactact acctgttggc gagcaaaagc aatcccgaac tgatccagat ggctgaaaag
     1681 ttggccaagg agattctggc gaaagagccc aataacattg agggtcacat tttgatgggg
     1741 agcg
//
LOCUS       DATCGC010000468         1709 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_173966, whole genome shotgun sequence.
ACCESSION   DATCGC010000468 DATCGC010000000
VERSION     DATCGC010000468.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1709)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1709)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1709
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_173966"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..699)
                     /locus_tag="VIJ87_04465"
     CDS             complement(<1..699)
                     /locus_tag="VIJ87_04465"
                     /inference="COORDINATES: protein motif:HMM:NF025431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4255 domain-containing protein"
                     /protein_id="HEY5443720.1"
                     /translation="MLLDVSLVTQTLVSLIDKHIKASPAGAGIVGLKVSAEPREELNG
                     PSTVGIYLYHITEEAHFKNAAPVSSVLPIRFTPMGLNLFYQLTAHSDTQDDPGIFREQ
                     LLTGLAMKALRDFPVIDDSTEIGGLKVFPVDLQGTDNRFRISLQPISPTESVSFWAPG
                     KLPMRLAAYYQASVVLLEPEKPALRAGRVLKYSIFTFTRGAPRLDGSRATITFTIPGD
                     TSTTSVESQPAEVSV"
     gene            complement(702..1457)
                     /locus_tag="VIJ87_04470"
     CDS             complement(702..1457)
                     /locus_tag="VIJ87_04470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443721.1"
                     /translation="MKAYLQRLVARAEGVSLTPSIAPAGHSLMTREATQDSFAHGEPT
                     TSFVRPNRPADSPEDLRPDKDQASTMSPDRRRIGRDETVVMEKMSVPGEIKQVPHAGP
                     VTIEPRPALNDTRSRVLAKTDFRKATFENLENGPDGKVKGARPGVNELIEAFEPVVTE
                     RLSTEELSLETRTPVITTSKLEPQRDDALRSEPLASGEPRLVIGQLRVDVVTTAPTQA
                     REVVRTVIRSVGPSQGNKLSLPTSRLRFGLGQM"
BASE COUNT          387 a          457 c          461 g          404 t
ORIGIN      
        1 gactgaaact tcggccggct gtgactccac gctggtagta gaagtgtctc ccggaattgt
       61 gaaggttatc gtcgctcggc taccgtcaag tcttggcgcg ccgcgggtaa aagtgaaaat
      121 gctgtatttc aaaacacgac cagcacgcaa cgctggcttt tcaggttcga gtaagacaac
      181 cgacgcctga tagtaagcag ccagcctcat cggcaacttt ccaggcgccc aaaagcttac
      241 ggactccgtc ggtgaaatgg gttgaagaga aatgcggaag cgattgtcag tgccctggag
      301 gtcaaccgga aaaactttca gaccaccgat ttccgtagaa tcatcgataa ccggaaagtc
      361 tcggagagcc ttcatggcaa gaccagttag tagttgctcc ctaaagatgc cgggatcatc
      421 ctgggtgtcg ctgtgggcgg tgagttggta aaagagattg agtcccatcg gagtaaagcg
      481 aattgggagg acggacgaca ccggggcggc gtttttgaag tgtgcttctt ccgtaatgtg
      541 atagagatag atccccaccg tacttggtcc attcagttct tcccggggct cggcggaaac
      601 tttgagcccg acgataccag cgccggccgg cgaggctttg atgtgcttat cgatcaaact
      661 gacaagcgtt tgcgttacca gtgagacgtc caacagcatg tttacatttg ccccagaccg
      721 aaacgcaggc gcgaggttgg aagactcagc ttgttgccct ggcttggtcc aactgaacga
      781 atcacggttc gcactacctc acgcgcctgg gtcggggcag tcgtcacgac atcaactctc
      841 agctgaccaa tgactaaacg aggctccccg gaagcaagcg gctcactccg caaggcgtcg
      901 tcgcgttggg gctcaagctt tgaagtagta attaccggtg tacgcgtctc gagcgataac
      961 tcctcagtag aaagtctttc agttacgacg ggttcgaacg cttcgatcag ttcgttcaca
     1021 ccaggccgcg cgccttttac ttttccatct ggtccgtttt caagattctc aaacgttgcc
     1081 tttctgaaat ctgtctttgc caacactcgc gagcgcgtgt cgtttagagc tggccggggt
     1141 tcaattgtca ccggccctgc gtggggcact tgcttgattt cacctgggac tgacattttt
     1201 tccatcacaa cagtttcatc tcgcccgatt cgtcttcgat ccggactcat cgtagaagcc
     1261 tgatctttat ctggcctcaa gtcttccggg gaatctgcgg gcctgtttgg tcgaacaaac
     1321 gaggttgttg gttcgccatg cgcaaatgaa tcctgcgtcg cctctcgggt catcagactg
     1381 tgcccagctg gagctataga aggtgtcagt gagacacctt ctgcacgcgc caccagtcgt
     1441 tgtagataag ctttcacgcg aatgaccttg aattctggcg aggggagaag tccacttcaa
     1501 tgaattcaac aaaggcttgt cgctggctgc gggggaggct gagtatttcg ttcagactcc
     1561 agccgtaagc caccgccaaa cgatgaatct ctcgcccgat gcgccgtctc tcctgaagaa
     1621 gcgcgcgcaa cagataagac tgaatatcga aatgaactgg ctgtttgcct ccacactcag
     1681 ggcatcgagc gtccaactca agatccatg
//
LOCUS       DATCGC010000469         1135 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_74584, whole genome shotgun sequence.
ACCESSION   DATCGC010000469 DATCGC010000000
VERSION     DATCGC010000469.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1135)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1135)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1135
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74584"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(41..1066)
                     /locus_tag="VIJ87_04475"
     CDS             complement(41..1066)
                     /locus_tag="VIJ87_04475"
                     /inference="COORDINATES: protein motif:HMM:NF013586.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HEY5443722.1"
                     /translation="MRPIKSRNVLTIITVLAFVAIATVAQTITKPPPAPARWRPLIGE
                     YVHDDDTAIVLEKDGKLGVLFKRTELDPLREISNLKFQFESGSARAGDPVVFSRDSRG
                     KVTQVEVGKSIYKRRPLGPEEGSNQLRVEPLRPVPTLIKEARTAQPPAEPGDFLPTDL
                     VELTRLDPTIKLEIRYATTNNLFGTVFYSEPRAFMQRPAAESVVRVNRKLKQSGYGLL
                     VHDAYRPWYVTKVFWDATPDDKKKFVADPSQGSRHNRGCAVDISLYDLKTGKPIEMVS
                     TYDETTDRAYPDYPGGTSLQRWHRDLLRDAMQSEGFTVYTAEWWHFDYKDWQKYRIGN
                     VAFDQIK"
BASE COUNT          252 a          296 c          302 g          285 t
ORIGIN      
        1 cagaactccc gcaggcgagc ggccaacatg cagttacttg ctacttaatc tgatcgaaag
       61 ctacattgcc gattcggtat ttctgccagt ctttgtagtc aaagtgccac cattccgcgg
      121 tgtacacggt gaaaccctcc gactgcattg cgtcacgcag aagatcgcgg tgccaacgtt
      181 gcaacgaagt accaccggga tagtcggggt aagcacgatc agttgtctcg tcgtaagtgc
      241 tcaccatctc aatgggcttt ccggtcttca gatcgtagag cgatatgtcg acggcgcagc
      301 cacgattgtg acgcgagccc tgcgatggat cggcaacaaa tttctttttg tcgtcaggtg
      361 tcgcatccca aaacactttc gttacgtacc agggccggta agcgtcatga accaacaagc
      421 cataacctga ctgtttcaac ttgcgattca cccgaacaac tgattcagca gctggacgct
      481 gcatgaaggc gcgaggctcg gaatagaaaa ctgtaccgaa cagattgttt gtcgtggcgt
      541 atcggatctc gagcttgatt gttggatcta acctggtcag ctcaaccagg tccgtgggca
      601 aaaagtctcc gggctctgct ggtggttggg ccgtgcgtgc ttctttgatg agtgtaggca
      661 ccggtcgcag tggctcaacg cgaagttgat tcgaaccttc ttcgggtcca agtggtctgc
      721 gtttatatat cgactttccg acctcgacct gggtgacttt gccgcgtgaa tcacgagaga
      781 acaccaccgg atcaccagcg cgtgcggatc cggattcaaa ctgaaactta aggtttgaga
      841 tctcccgcag cggatcgagt tcggttcgct tgaagaggac acctagtttt ccatcctttt
      901 cgaggacgat agctgtgtcg tcatcgtgaa cgtactcgcc aatcagaggt cgccatcgag
      961 cgggtgctgg aggcggtttg gtgatcgtct gcgcaaccgt tgcgattgct acaaaggcaa
     1021 gcaccgtgat gattgtcaga acatttcgag atttgatagg cctcattttc cttccgccac
     1081 tgcattctga attctttcaa gtgccccgtg tagaatttcg tcctcacggg caata
//
LOCUS       DATCGC010000470         2271 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_9723, whole genome shotgun sequence.
ACCESSION   DATCGC010000470 DATCGC010000000
VERSION     DATCGC010000470.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2271)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2271)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2271
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9723"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1244
                     /gene="serA"
                     /locus_tag="VIJ87_04480"
     CDS             <1..1244
                     /gene="serA"
                     /locus_tag="VIJ87_04480"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: protein motif:HMM:TIGR01327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004617 - phosphoglycerate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HEY5443723.1"
                     /translation="QANSSLQAGRWERKKFIGVELQGKTLGIVGLGRIGRVVAARARA
                     MGMTIVAYDPFIAQEQARDLEIELTTLDEVYSRADFLTVHTPLTAETRGLIDREVLSK
                     MKPSARIINCARGGLVDEEALAEAIKSGTIAGAAVDVFTKEPPPPDHPLLGLEQVIVT
                     PHLGASTTEAQEGVAYTVAEQMRDYLLTGALKGAVNVPMVGLKELNLMQPYVVLAEQL
                     GRFQAQLVDKPVSEVRIEFAGEIVDIDAAPVVRGFLSGLLRDVSARVNVVNAFLIAEE
                     RGIKVTTTYVRTTGDKTPAIHTEIHAGQSRQSLAGNLFGFGSQTREGRITEIDGFHLE
                     AIPHGHMVVMRNRDVPGVIGSVGTILGQGGVNISRFHLGRHAPGGDAIAVIEVDAPLN
                     KETLQSLRSLEQVISAQTIEL"
     gene            complement(1503..1640)
                     /locus_tag="VIJ87_04485"
     CDS             complement(1503..1640)
                     /locus_tag="VIJ87_04485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443724.1"
                     /translation="MTTPELGFADFADYYGKRQAKVRGGMFDKLWSHMQKSGVIIRSV
                     A"
     gene            1639..>2271
                     /locus_tag="VIJ87_04490"
     CDS             1639..>2271
                     /locus_tag="VIJ87_04490"
                     /inference="COORDINATES: protein motif:HMM:NF019403.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heparan-alpha-glucosaminide N-acetyltransferase
                     domain-containing protein"
                     /protein_id="HEY5443725.1"
                     /translation="MSASVSTRTLTPQPIPLAYAGDSQDERTPTKTRVDSIDLLRGIV
                     MVIMMLDHTRDYIHNAAFQFDPLDPTQTNPALFFTRWITHFCAPTFVFLAGTGIYLQF
                     SRGKTKTDLSRFLITRGLWLIFLEFSLVRLGAFFNVEPKFLMMMQVIWVIGLSMILMS
                     ALIHLPLKVLAAFGLIMIALHNLLDPFRIQGAFGNPNLGFLQKLWIILHQQ"
BASE COUNT          544 a          581 c          588 g          558 t
ORIGIN      
        1 cccaggccaa cagcagtctt caagcaggac gctgggaacg caagaagttt attggtgtcg
       61 aactacaagg aaaaactctc ggcattgttg ggttaggacg tatcggtcga gtcgttgccg
      121 caagagcgcg ggcgatggga atgacaatcg tcgcctatga tccgtttatc gcgcaggagc
      181 aggctcgcga tcttgagatt gaacttacga cgctcgatga agtgtattcc cgtgccgact
      241 ttctcacggt gcatacgccg ctaacggccg agacgcgtgg tctcatcgat agagaagtgt
      301 tgtcgaaaat gaaaccaagt gcgcgaatca tcaattgtgc gcgcggtgga ttggtcgatg
      361 aagaagcgct tgctgaagcc attaagagcg gaactattgc cggtgctgcg gtggacgtgt
      421 tcacaaaaga accgcctccg cctgatcatc cattgctcgg actcgaacaa gtgatcgtca
      481 cgccgcatct gggcgcatct acaaccgaag cgcaggaagg cgttgcctac actgtggcgg
      541 aacagatgcg tgactacttg ctgacgggcg cactcaaagg agcagtgaat gttccgatgg
      601 ttggtttgaa agaactgaac ctgatgcagc cctacgtagt gcttgctgaa cagttgggac
      661 gatttcaagc acagctcgta gataagccgg ttagtgaagt caggatcgag tttgccggtg
      721 agatcgtcga catcgatgcg gcgcccgtgg tgagaggatt tctaagtgga ctgttacgcg
      781 acgtaagcgc gcgggtcaac gtcgtaaatg catttctcat tgctgaggaa cgcggcatca
      841 aagttacaac gacctatgtt cgcaccactg gagacaagac gccggcgata catactgaga
      901 tacatgcggg acagtctcgc cagagtttgg ccggtaactt atttgggttc ggaagccaaa
      961 cccgcgaggg acgaattaca gagatcgacg ggtttcacct tgaagcgatt ccgcacggac
     1021 acatggtcgt gatgcgcaat cgcgacgtgc ccggcgtcat tggcagtgta ggaacgatcc
     1081 tgggccaggg tggtgtcaac atcagtcgtt ttcatctcgg tcgtcatgca ccaggtggtg
     1141 acgcaatcgc agtcatcgaa gtcgatgctc ctctaaacaa agagaccctc caatcgcttc
     1201 gctcattgga gcaagtgata tctgcgcaaa cgatagagtt gtgagcgctc gtcaaactaa
     1261 gccttaacag tttggccgca gatgtcattc tccccaagct tcagcttggg gttacagtcg
     1321 cgtccaattt gaggaaccgt tttaacggtt tacgagtttg agccaaccaa gctcgacacc
     1381 aaaacttcat tggcgatcag cttcatcgaa acactgggta aaccgttgaa acggtccacg
     1441 agtactgagc gcgcaccata accccaagct gaagcttggg gagaatgaga gcgtttacac
     1501 actcaagcta ctgatctgat gatgactcca gacttttgca tgtggctcca aagcttatcg
     1561 aacatcccac cgcgaacttt cgcttgcctc ttgccgtagt aatctgcaaa atccgcaaat
     1621 cccagttcag gagttgtcat gtcagcaagt gtctcgaccc gtaccttgac tccccagccg
     1681 attcccctgg cctatgctgg tgattcacag gacgaacgaa cgccaactaa aacacgcgtc
     1741 gactccatcg acctcctgcg cggcatcgtg atggttatca tgatgctcga tcacacgcgt
     1801 gactacattc ataacgctgc cttccaattt gatcccttag atccaactca aacaaatccc
     1861 gctctcttct ttactcgttg gatcactcac ttttgtgctc caacatttgt cttcctggct
     1921 ggcactggaa tctatctgca gttttcacga gggaagacca agacagatct gtcgcgcttc
     1981 ttaataactc gcgggttgtg gttaatcttt ttggaattca gcctggttcg attgggtgct
     2041 ttcttcaatg tcgaaccgaa attcttgatg atgatgcagg tcatttgggt gatcggtctg
     2101 tcgatgatct tgatgtctgc cttgattcac ctgccactaa aagtcctggc cgcgtttggc
     2161 ttgataatga ttgctttgca caatctgctc gacccctttc gtatccaagg tgcgtttgga
     2221 aatccgaatc ttggattcct ccaaaaactc tggatcattc ttcatcagca g
//
LOCUS       DATCGC010000471         1567 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_372857, whole genome shotgun sequence.
ACCESSION   DATCGC010000471 DATCGC010000000
VERSION     DATCGC010000471.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1567
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_372857"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1014
                     /locus_tag="VIJ87_04495"
     CDS             <1..1014
                     /locus_tag="VIJ87_04495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443726.1"
                     /translation="INFVLNNRLPATQADLAGFNTLPNLIYHFNANQVRPSSQVGLHP
                     QLVSYNVANSDGKNVGFNPNQTIGPGGMARYRWYAGDIAVSGSQRIATPIEFGATNLI
                     SSDPIKHSNKGAVGSLIIEPQGSTWIEDATSRAQATITKSDGTTFREFVLQFQTDINM
                     RFADNSPVPNLAGPNGAEDPEDSAQKALNYRTEPLWKRMGYVPETPFEKTRDFDFTNV
                     LTNAQVGGDPQTPVFTAQAGDLVRFRILNANGHMRNNVFNLHGHFWQEEPFTSGSKVI
                     GDNPLSEFKGATYGVGPTSHYEVIPVNGAGGARRIAGDYLFRTQESFMFDGGIWGIFR
                     VAP"
     gene            1202..>1567
                     /locus_tag="VIJ87_04500"
     CDS             1202..>1567
                     /locus_tag="VIJ87_04500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443727.1"
                     /translation="MSPVLNKYNFCIEALLCFVLILSLIGIPTTLTTPALANSSRLLP
                     THRVSQSDPGALPLSFELNQGQTNERVRFLARSGGYVLFLTPTEAVMALDNPAAHKKG
                     KQNRESGESEVKAPRRIVRM"
BASE COUNT          378 a          440 c          419 g          330 t
ORIGIN      
        1 atcaacttcg ttctcaacaa caggctgccg gcaactcagg cggatctggc cggcttcaac
       61 accctgccga acctgatcta ccacttcaat gccaaccagg tcagaccttc aagccaggtt
      121 ggtttgcacc cgcaactggt ctcctacaac gtggcgaaca gcgacgggaa gaacgtcggt
      181 ttcaatccca accagacgat tggaccaggc ggcatggcca ggtaccgttg gtacgcaggc
      241 gacattgctg ttagcggcag ccagcggata gcgacgccga tcgaattcgg cgccaccaac
      301 ttgatctcat ctgatccgat caagcacagc aacaagggtg cagtcggatc gctcatcatc
      361 gaacctcagg gatccacctg gatcgaagac gcgacatcgc gtgcgcaggc aacgataacc
      421 aagtctgacg gcacgacgtt ccgtgaattc gtattgcagt tccagacgga catcaacatg
      481 aggttcgcgg ataacagccc ggtaccaaac ctggctggtc ctaacggtgc ggaagatccg
      541 gaagactcag cccagaaagc gcttaactat cgcactgagc ctttatggaa acgcatggga
      601 tacgtgccgg aaactccgtt cgagaaaacg cgcgactttg acttcaccaa cgtgctcaca
      661 aacgcacagg tgggtggcga tccgcagacc ccggtattta cggctcaggc tggcgacctg
      721 gtcagattcc ggattctgaa tgccaacggt cacatgcgca ataacgtgtt caacctgcac
      781 ggacacttct ggcaggaaga gcctttcacg agtggttcga aggtgattgg cgacaatccc
      841 ttgtcagagt ttaagggcgc cacatacgga gtcggaccta cttcgcacta tgaagtgatt
      901 ccggtgaatg gcgccggtgg cgcacgccgt atcgcgggtg attacctgtt ccggactcaa
      961 gagtccttca tgttcgatgg aggaatctgg ggcattttcc gcgttgctcc gtaacgcatg
     1021 aatcctgatt gcgaacttcg caagagggaa ctcaaggagt gcagcttgct gcgggcaggc
     1081 tgcactcctc tctaagtgga tacgttcctt gaaatgcatt tcaaattaca cgcccagggc
     1141 tcccgaagaa cttcgctcag gacgagatcg cattcttaat ttacctgagg aggtataggt
     1201 catgtcaccg gtcttaaata aatacaattt ctgcattgaa gcactacttt gtttcgtcct
     1261 gatactttcg ctcattggta ttcccaccac attgacaacc ccggcgctcg cgaacagttc
     1321 aaggctcctt cccacacacc gcgtgagtca gtctgatccg ggcgcgctac cactcagctt
     1381 cgaactcaat caaggacaga ccaatgaacg agtccgattt ctcgcgcgga gcggggggta
     1441 tgttctcttt ctgactccga ctgaagcggt catggctctg gacaacccgg ctgctcacaa
     1501 aaagggaaag cagaatcgcg agtcaggtga gagtgaggta aaggcgcccc ggcggatcgt
     1561 gcggatg
//
LOCUS       DATCGC010000472         1124 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_40513, whole genome shotgun sequence.
ACCESSION   DATCGC010000472 DATCGC010000000
VERSION     DATCGC010000472.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1124)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1124)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1124
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40513"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(49..969)
                     /locus_tag="VIJ87_04505"
     CDS             complement(49..969)
                     /locus_tag="VIJ87_04505"
                     /EC_number="4.1.3.3"
                     /EC_number="4.2.1.41"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_process: GO:0009436 - glyoxylate catabolic process
                     [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HEY5443728.1"
                     /translation="MKRNTLTPDQLRGVFAVPPIARRNDSSIDFEQNELIVRHIAAGG
                     ISRLIYGGNAFLYHVTLADFEALLEWLSSSPLELWAIPSIGPSYGRSLEQAHLLRKHG
                     FSTAMVLPCADPRDAEGLERGYRDIADAMGGNLIIYLKEEGNFGSQKFAGLDAVARLV
                     DDGVCVGIKYAVVRDQPGQDSYLEGLLERVDRKYVISGIGERPAIVHLRDWKLTGFTT
                     GSGCIAPGLSQQLFEALAREDYQAAEALRSRFIPLEDLRDGWGPARVLHHATEAARIA
                     RTGPIVPYVSALEPEKVRSIESVVRELLPG"
BASE COUNT          267 a          319 c          292 g          246 t
ORIGIN      
        1 agcccaattt tgagtcaacg acaaactgaa gtttatcgga catccaactc atccgggcag
       61 cagttctcta acaactgatt cgattgacct gactttctca ggctctagcg ctgagacata
      121 cggaacaatt ggtccagtgc gggcgatgcg ggctgcttcg gtagcgtgat gcaaaactct
      181 cgctggcccc cagccatctc tcaggtcctc aagcggaata aatcgacttc gcaaggcttc
      241 agccgcctga taatcctccc tcgctagcgc ctcgaaaagt tgctgactca accccggcgc
      301 aatgcatcct gaaccggtag tgaaacctgt caacttccag tcgcgcaagt gaacaattgc
      361 gggtcgctcg ccaatgccac tgatcacata cttgcgatcg actctttcga gcaaaccttc
      421 aagatacgaa tcctgtccag gttgatcccg cacgacggca tacttaatgc caacacaaac
      481 gccgtcatcg acaaggcgtg cgacggcatc gaggccggca aacttttgcg agccaaagtt
      541 accttcctcc ttgagataga tgatcaggtt tccgcccatt gcgtcggcga tatcacgata
      601 gccacgttcc aggccttcgg cgtcgcgcgg atcagcacaa ggcaacacca tggcagtcga
      661 gaacccatgc tttcgtaaaa gatgtgcttg ttccaacgag cgaccatatg atggcccaat
      721 gctgggaatc gcccacaact caagcggact tgaactgagc cactcgagca acgcttcgaa
      781 gtctgcgagt gtgacgtgat agagaaaggc gttcccgccg tagatgagtc gactgatccc
      841 gccggcagca atgtgccgaa cgatgagttc attctgctcg aagtcaatag acgagtcgtt
      901 gcggcgcgcg ataggtggga cagcaaacac accgcgcagt tgatctgggg ttaaggtgtt
      961 tcgcttcatt gagtggccat gatagctgat tctttttcaa tgctcgtgat tatgtgaacg
     1021 cggggccaac gaggtcagta ccacagcgcg gtagcgtgtg gctcaaacgg ttgcgtatgg
     1081 ctccactcga tcgagaatgg atctgcgcgg ctttgccgct cccc
//
LOCUS       DATCGC010000473         1038 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_40552, whole genome shotgun sequence.
ACCESSION   DATCGC010000473 DATCGC010000000
VERSION     DATCGC010000473.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1038
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40552"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(12..653)
                     /locus_tag="VIJ87_04510"
     CDS             complement(12..653)
                     /locus_tag="VIJ87_04510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443729.1"
                     /translation="MIEELELEPESHSYIWQGTRIPSCSEILGQVSKGFGFLSKEDLT
                     FYQDRGHMVHKAIELTLRGEMDKRSKGARDSLPYIESWDYFVKDYGFEPFVDAEGPFC
                     ERRLVHPSYRYGVTPDVVGMVKKRLAVVEIKSTSAHSPLTGLQTAAQALAVRLYLPKP
                     SLKLEDRYAVRLIPGKPPEVKQYKAPSDEGVFLSLLNVLSWKTANKITLKEIR"
     gene            complement(650..937)
                     /locus_tag="VIJ87_04515"
     CDS             complement(650..937)
                     /locus_tag="VIJ87_04515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443730.1"
                     /translation="MTLIPVQRKMCGTCPFRPRSKYGSFASVLTEAALTEGSRICHNT
                     GENDFIGKTGKPERLCRGARDIQLKVFAAAGVITAPTDEAWAAKCDEMGLR"
BASE COUNT          223 a          308 c          244 g          263 t
ORIGIN      
        1 aatttctgtg ctcatcgaat ctccttcaaa gtgattttgt ttgcagtttt ccaactcagc
       61 acattgagca agctgaggaa tactccctca tcgctcggtg ctttgtattg cttgacctct
      121 ggcggcttgc cggggataag cctgactgcg tatcggtctt ccagtttcag gcttggcttg
      181 ggtagataca gcctcacagc gagtgcctga gccgccgtct gcaagccagt gagaggcgaa
      241 tgtgccgacg tcgacttaat ttccacgact gccagccgct tcttgaccat gccgacaaca
      301 tcaggcgtga cgccataccg atacgacggg tgaaccagcc gcctttcaca gaacggcccc
      361 tcggcatcaa caaatggttc aaagccgtag tccttcacaa agtaatccca gctttcgatg
      421 tagggcaaag aatctcgggc acccttgctt cgcttgtcca tttcaccgcg cagggtgagt
      481 tcgatggctt tgtgaaccat gtgcccgcga tcctggtaga aggtcaagtc ttccttcgaa
      541 agaaagccaa aacccttact cacctgaccc aatatctcgg aacacgatgg tatccgcgtt
      601 ccctgccaga tataggaatg gctctcaggt tctaattcga gttcttcgat catcgcaatc
      661 ccatctcgtc gcatttcgcg gcccatgctt catccgttgg cgcggtgatg actcctgctg
      721 ccgcaaagac ctttagttga atgtctcgcg cgcctcgaca caaccgttcc ggctttccag
      781 tcttgccaat gaagtcgttc tctccggtgt tgtggcaaat acgcgaaccc tcagtcagtg
      841 ccgcttcggt cagtacactt gcaaaagagc cgtacttgct ccgcggacgg aaaggacacg
      901 tcccgcacat ctttcgctgt accggaatca atgtcatgcg ttttgcggat cgatgatcca
      961 tcccagcact gtctgcaaat ctgaacgctt cacctgttca agcccgtcca aaccgaaccg
     1021 tttcttgaag tcgccatt
//
LOCUS       DATCGC010000474         1128 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_140139, whole genome shotgun sequence.
ACCESSION   DATCGC010000474 DATCGC010000000
VERSION     DATCGC010000474.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1128)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1128
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140139"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            71..526
                     /gene="aac(6')"
                     /locus_tag="VIJ87_04520"
     CDS             71..526
                     /gene="aac(6')"
                     /locus_tag="VIJ87_04520"
                     /EC_number="2.3.1.82"
                     /inference="COORDINATES: protein motif:HMM:NF043067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047663 - aminoglycoside
                     6'-N-acetyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside 6'-N-acetyltransferase"
                     /protein_id="HEY5443731.1"
                     /translation="MTDFRYSVRPLREKDLNEWLRLRKCLWDATSETDHKREMVEIID
                     HPDSQFVLVAEHEAGKLIGFLEVSIRPFVEDCETDHVGYLEGWYVQPEVRGRGIGREL
                     VRIAEQWAREKGCEEMASDAEIGNDLSIAAHQALGYSETSRLIHLRKEL"
     gene            536..>1128
                     /locus_tag="VIJ87_04525"
     CDS             536..>1128
                     /locus_tag="VIJ87_04525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443732.1"
                     /translation="MTLSFNVLSKTAGLISLAIVLLASPSGLKAQSTLQDHPTPITRN
                     ELNGTIHARDLGDARLTTYYYWFEGSQGDVFINLNTRNFAGDIDVFTQNGLKSLTKII
                     VFPDFGDVETGRVIYLRKPERLILRVQGRTPNDESASFRFKFAGSFVAATGSDDDVPE
                     IPKVSNSTTGRVQVNSAGTIIPPPPKPTPAEAKIDKET"
BASE COUNT          299 a          274 c          306 g          249 t
ORIGIN      
        1 gctgtgtcgc ggctttttaa tttgaaagac gttggaagcg aaggcaagag actgttagaa
       61 tcacgtttga atgaccgact tccgatatag cgtacgcccc ctgcgcgaaa aggacctgaa
      121 cgaatggctt cgtttacgca agtgtttgtg ggacgcaacg agcgaaacag atcataagcg
      181 ggaaatggtc gaaataatcg accatccgga ttcgcagttc gttctcgttg ctgaacacga
      241 ggccggaaag ttgatcggct ttttggaagt aagcattcgc cccttcgtag aggactgcga
      301 gaccgaccat gttggatatc tcgaaggctg gtatgtgcag cccgaagttc gaggccgtgg
      361 gatcggtagg gaactcgtcc ggatagccga gcagtgggca cgcgagaaag gttgcgagga
      421 aatggcatcg gatgccgaga taggcaacga cctgagcatc gccgcacacc aagcattagg
      481 atattcggaa acctcaaggt tgatacattt gagaaaggaa ttgtgatcga gctaaatgac
      541 gttgagtttt aatgttctgt cgaaaactgc tggccttatt tcgctcgcca tcgttttgtt
      601 agcgtccccg agtggactca aagcacagtc cacgctgcaa gaccatccga ctcctataac
      661 ccgaaatgaa ctaaatggta ccatccacgc ccgcgacctt ggcgacgccc ggctgaccac
      721 atactactat tggttcgaag gatcgcaggg cgacgttttc atcaacctaa atacaagaaa
      781 ctttgcgggc gatatcgacg tctttacaca gaatggcctc aagtcactga ccaagatcat
      841 tgtgtttcca gatttcggag acgtggaaac cggtcgcgtg atctacttac gaaagccaga
      901 acggctgatc ttgcgcgtac agggaaggac gcccaatgac gagtctgcaa gttttcggtt
      961 caaatttgcc ggcagttttg ttgcggcaac cgggagcgat gatgacgtcc cggaaatacc
     1021 gaaggtctcg aattctacaa ctggtcgcgt gcaggtaaat tccgccggaa cgataattcc
     1081 gccgcctccg aaaccgacac ccgcagaagc taagattgac aaggaaac
//
LOCUS       DATCGC010000475         2021 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_9943, whole genome shotgun sequence.
ACCESSION   DATCGC010000475 DATCGC010000000
VERSION     DATCGC010000475.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2021
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9943"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..621)
                     /locus_tag="VIJ87_04530"
     CDS             complement(<1..621)
                     /locus_tag="VIJ87_04530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443733.1"
                     /translation="MTTNQNIKVEKSTQFCTEFNDINKDAIEAGMMNGIEPSERIVKH
                     EQELASRAQAQIEQNVAELAVLRQLDPATDGKRALGVRVRIENMYTGSSKWSSGHCTG
                     WKLVIGDYGDTKWLKISNGRELGLDAKQKAKALEKIREIVGVAQAQRSVEQVKAATEA
                     RYRTFIAAPISKEFVKQLTQQSWLSEYSTPEGFRVEENGKLTYKGET"
     gene            complement(684..881)
                     /locus_tag="VIJ87_04535"
     CDS             complement(684..881)
                     /locus_tag="VIJ87_04535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443734.1"
                     /translation="MNKSKFKVTVTAVGYETTELVVEATSKQYAGSLFTLEALRAWAK
                     HNDIAQDSSSYGLAFVRVSKV"
     gene            complement(918..1097)
                     /locus_tag="VIJ87_04540"
     CDS             complement(918..1097)
                     /locus_tag="VIJ87_04540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443735.1"
                     /translation="MTKFEKIGVLTRAELDALSFRELETELAKLELRAGVIREELQAR
                     RFGAKATLTNHPFVN"
     gene            complement(1358..1858)
                     /locus_tag="VIJ87_04545"
     CDS             complement(1358..1858)
                     /locus_tag="VIJ87_04545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443736.1"
                     /translation="MNSARQHVFETVQRLFKERHADIEPHRACAYLAKIGMEVLSRYP
                     RFYRPVLQAGTMQWEIVPKQLDDGVRGTHFAFKWSPTDFNSILAMASGGIPEMHVWIA
                     LPDTNEIVDFSTGTFPAFVSTLGMEWLAPKPPDFLWQDVSQAAAEGHFYEPNEVATRY
                     ALSFKL"
BASE COUNT          421 a          538 c          498 g          564 t
ORIGIN      
        1 cgtctcgccc ttgtaggtga gcttgccgtt ctcttcgacg cgaaacccct ctggcgtcga
       61 gtattccgac aaccagctct gctgagtgag ttgcttgacg aattccttgc taataggggc
      121 ggcgataaac gtccgatagc gagcttccgt tgccgctttg acttgctcga ccgagcgctg
      181 agcttgagca acgccgacga tttcccgaat cttctccagc gctttcgctt tctgctttgc
      241 gtcgagcccg agctcccggc cgttgctgat tttcagccac ttagtatcgc cgtaatcgcc
      301 gataacgagc ttccaaccag tgcaatgccc actggaccac ttgcttgagc ccgtatacat
      361 attctcaatt cgaacgcgaa caccgagcgc tcttttcccg tccgtagccg ggtcgagttg
      421 ccgcaagacc gcgagctcgg ctacattttg ctcaatttgc gcttgagcgc gggaagccag
      481 ttcttgctcg tgctttacga tacgctcgga gggttcgata ccgttcatca ttcccgcttc
      541 aatcgcgtct ttgttgatat cgttgaattc ggtgcagaac tgcgtggact tttcgacttt
      601 gatattttga ttcgttgtca tattttgatt ttgttttttg cccttgtaag agagttatcg
      661 tcagagtagg gaaatacttt agctcaaact ttagaaactc gaacgaacgc cagcccgtaa
      721 gagctagagt cttgagcgat atcgttgtgc ttcgcccaag ctcgcaaagc ttccagcgta
      781 aatagcgagc ccgcgtattg cttcgacgtt gcttcgacta ccagctcagt cgtctcgtat
      841 ccaaccgccg ttaccgttac tttgaatttt gatttgttca tattagtatt atcgtcagcc
      901 cttagggata ctttagctca attaacgaag gggtgatttg tgagcgtagc ttttgccccg
      961 aagcggcgag cttgcaattc ttcccggata actccggcgc gaagctctag ctttgcaagt
     1021 tcagtttcta gttctcgaaa gcttagcgcg tcgagttcag cccttgttaa tactccgatt
     1081 ttttcgaact ttgtcatttt gtttttcata ctcccctaat agcaagctcg ataccactat
     1141 tggattatct ctaaagcgtt gagtttagga caaaccttta atcgactact ttccatagtg
     1201 tctcaaatct ggatagacac tgtctcaaat ttggactgga gcttctttct cgtagcgtct
     1261 cgcttcgaaa agacgtctta atccgtcagg attgcacgct aggaccgttt ggatttgctt
     1321 ttgagtatca acgtagcgat ttgctatggg caacgtccta taacttaaag ctcaaagcgt
     1381 agcgagtcgc tacttcgttc ggctcgtaga agtgtccctc ggctgcggct tgcgagacgt
     1441 cctgccagag gaagtccggc ggcttagggg cgagccattc catcccgagc gtcgagacga
     1501 aagccgggaa cgtcccggta gagaagtcta ctatctcgtt cgtatccggc aacgcaatcc
     1561 agacatgcat ctcagggatt cctccagacg ccatagcgag tattgagttg aagtccgtcg
     1621 ggctccactt gaaagcgaag tgcgtcccgc gtacgccgtc gtcgagttgc ttggggacaa
     1681 tctcccattg catcgtcccc gcttgcaaga cggggcgata gaagcgcggg taacggctca
     1741 agacttccat cccaatcttc gccaggtaag cgcaagcgcg gtgcggttcg atatccgcgt
     1801 ggcgctcttt gaagagccgc tggaccgtct cgaatacgtg ttgacgagca gagttcattg
     1861 gcacctccgg attgcgtggt cgcggcaata agagttcatc cggatacgct caacccaacg
     1921 agaataactt tcttgcgatt gcggttctct aagcgtctct tgagtccaga gaatcttgtt
     1981 gcggaattcg ccccggcaat cttgacactc gcattctttg a
//
LOCUS       DATCGC010000476         1506 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_140163, whole genome shotgun sequence.
ACCESSION   DATCGC010000476 DATCGC010000000
VERSION     DATCGC010000476.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1506
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140163"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1506)
                     /locus_tag="VIJ87_04550"
     CDS             complement(<1..>1506)
                     /locus_tag="VIJ87_04550"
                     /inference="COORDINATES: protein motif:HMM:NF019130.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-glucuronidase"
                     /protein_id="HEY5443737.1"
                     /translation="PRLRDYARACASVGINGSLLNNVNANSQILTADYLKKVAAIANV
                     FRPYGVHVYLSARFSAPMDIGGLQTADPLDANVAAWWKKKADEIYTLIPDFGGFVVKA
                     NSEGQPGPRTYNRTHADGANMLAAAVSLHHGVVMWRAFVYDMKPGYDRAGAAYENLQP
                     FDGKFAENVFLQVKNGPIDFQPREPFHPLFGAMPRTQLMPEFQITQEYLGFSNHLVFL
                     APMWREFFSADTYAKGRGSTVTKVVDGSLSKQRLTGIAGVANTGTDRNWTGHQFLQAN
                     WFAFGRLAWNPDTLSRSIAEDWIRMTFTRDPNSVETLTRIMLESREAVVDYMTPLGLH
                     HIMWGNHHYGPAPWWNTFPRDDWNPVYYHRADDKGIGFDRTATGSNTVAQYHPPVSKL
                     FADLNTCPEEFLLWFHHVPWNHRMRSGKTLWDELALHYERGVDWVRITRMQWDKLSNE
                     IDPERHAEVSRKLAIQERDAIWWRDACLLYFQGFSKQPLPAGVSKPSFTLE"
BASE COUNT          359 a          389 c          398 g          360 t
ORIGIN      
        1 tgttcaagcg taaagctcgg cttcgaaact cctgcaggta acggttgttt ggagaagcct
       61 tgaaaataga gaagacacgc gtctcgccac caaatggcat cgcgctcttg tattgccagt
      121 ttcctcgaaa cctccgcgtg acgttcggga tcaatctcgt ttgaaagttt gtcccattgc
      181 atacgcgtaa tgcgtaccca atcgacgccg cgttcatagt gaagcgcaag ttcatcccaa
      241 agcgtctttc cagaacgcat tcgatgattc cagggaacgt gatggaacca gagcagaaac
      301 tcttcggggc aagtattcaa gtctgcgaag agtttgctca caggcggatg atactgagcg
      361 acagtattgc tacccgtggc cgtgcgatcg aagccgattc ctttgtcatc ggcacggtga
      421 taataaaccg gattccagtc atcgcgggga aatgtattcc accagggtgc cggaccgtaa
      481 tgatgattgc cccacatgat gtgatgaaga ccgagcggcg tcatgtagtc caccacggcc
      541 tcacgcgatt cgagcattat ccgggtcaga gtctcaacgg agtttggatc tcgagtgaat
      601 gtcattcgga tccagtcttc agcgattgat cgtgacaatg tgtcagggtt ccacgcgagg
      661 cgtccaaaag caaaccagtt tgcttgtagg aattgatgac cagtccaatt gcgatccgtt
      721 cctgtgtttg cgacaccggc gattccagtc agtcgttgtt tagatagact gccatcaacc
      781 actttggtga ccgttgaacc tcgacctttc gcgtaggtgt cagcactaaa gaactcgcgc
      841 cacatcggag ccagaaaaac gaggtgattg gaaaagccca ggtactcctg ggttatttga
      901 aactcgggca tcaactgcgt ccttggcatc gccccaaaca atggatgaaa cggctcgcgt
      961 ggttggaaat cgatcggtcc attcttcact tgcaaaaaaa cgttctcagc gaatttgccg
     1021 tcaaacggtt gcaagttttc ataggcagcc cccgcgcggt cgtatccggg cttcatgtca
     1081 taaacaaacg cgcgccacat aaccacgcca tggtgcaggg agactgctgc ggcaagcatg
     1141 tttgcgccgt ctgcatgagt gcgattgtag gttcgcggcc cgggttgtcc ttcgctattt
     1201 gctttgacga cgaaaccacc aaagtcagga attagtgtgt agatctcgtc cgccttcttt
     1261 ttccaccagg cagccacatt tgcgtcgagc ggatcagcag tttgtaagcc accgatgtcc
     1321 attggtgccg aaaatcgcgc tgacaggtag acatgaacgc cgtagggtcg aaatacgttt
     1381 gcaatcgcag caactttttt caagtagtct gccgtcaaga tctgtgaatt cgcgttgacg
     1441 ttattcaaca gcgagccgtt gatgccgacg gatgcgcaag cccgcgcata gtcacggagc
     1501 ctgggg
//
LOCUS       DATCGC010000477         1283 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_206600, whole genome shotgun sequence.
ACCESSION   DATCGC010000477 DATCGC010000000
VERSION     DATCGC010000477.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1283)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1283)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1283
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_206600"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            83..586
                     /locus_tag="VIJ87_04555"
     CDS             83..586
                     /locus_tag="VIJ87_04555"
                     /inference="COORDINATES: protein motif:HMM:NF017758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF892 family protein"
                     /protein_id="HEY5443738.1"
                     /translation="MAVNSPQEMFVLLLSDVRRKTERSAGFYQEVAKLAEDPDIKEAV
                     EARAFVAEKSLDKIDQAFKLINQKPVELSGKTEEVFVEDFRREVAEIKAPGVRKLFIL
                     SKLMHLTHWRIGEYVALVAAADSTGHFGVGVLLESCLGDYLAFVERNRRLIRKIAEAK
                     AATRASG"
     gene            complement(738..1130)
                     /locus_tag="VIJ87_04560"
     CDS             complement(738..1130)
                     /locus_tag="VIJ87_04560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443739.1"
                     /translation="MKKYLPCLLASILLIASISMPVAAYQSKPEATPVEKVKAKVAKI
                     GVGEKAKATVILKDGTKKKGYIGQAGNDDFVIRDRNTDAPTTISYSEVTKVESNKGHS
                     TARNLAIGIGIGAGALLAIIFITIASLD"
BASE COUNT          323 a          308 c          331 g          321 t
ORIGIN      
        1 attgtgaatc aacgtgactc tatagtcata ccgtgcgcca cgtgcggggg agtatcggtt
       61 ccgagactga aaggagtatg taatggcagt taatagtcca caggaaatgt ttgtcttact
      121 actaagcgat gtacgacgaa agacagaacg ctcagccggg ttctatcagg aggtcgccaa
      181 actcgctgaa gatccagata tcaaggaagc agtcgaagcg agagcgttcg tggcggaaaa
      241 gtctctcgat aagattgacc aggcgttcaa gctgataaac caaaagccag tagagctcag
      301 cggtaaaacc gaagaagtct ttgtcgagga cttccgccgt gaagttgcgg aaatcaaggc
      361 gccaggtgta aggaaacttt tcatcctgtc taagctaatg catttaactc attggcgaat
      421 cggagagtat gtggcactgg tcgcagccgc agatagcacc ggccactttg gtgtaggtgt
      481 cttgttggag agctgcctcg gagactatct cgcatttgtc gagagaaatc gtcgcctcat
      541 caggaagatt gccgaagcga aagcagccac cagagcatcc ggttgagcta tgtaatcaat
      601 tgttcaatgc ggtgcccgca atgtcttgac gacttgacat aacgaatccc cgacgcagac
      661 gtgacatacg ctatggttga agagcgtcgg ggattcgtta tttttgttta tttccttcta
      721 caactgcttc cgcagcgtta gtccaaagac gcaatcgtga taaagattat tgcgaggagc
      781 gcgccggcac cgatgccaat accaatggcc aggttccttg cggttgagtg gcccttattg
      841 ctctcaactt tagtgacctc gctataactg atcgtcgttg gcgcgtcagt gttccgatca
      901 cgaatgacaa aatcatcgtt tccagcctgg cctatgtaac ctttcttctt cgtgccatcc
      961 ttcagtatga cggtggcttt ggctttctca ccaacaccaa ttttggcaac cttggcctta
     1021 accttctcca ctggcgtcgc ctccggttta ctctgatacg cagcaaccgg catcgatata
     1081 ctggcgatga ggagaatgct ggcgagcaga caaggcagat attttttcat gattgtagtt
     1141 tccgtttctg gtagccgcgt ccacagtggg ccttaaacgc aagcgccatc tagtgtcgtg
     1201 gttggaaaag cgaacactac aaccgcaatg agaatgccac tcactccgca gtaaatatca
     1261 ggcttatcgg tttgtgcgaa agg
//
LOCUS       DATCGC010000478         2065 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_473091, whole genome shotgun sequence.
ACCESSION   DATCGC010000478 DATCGC010000000
VERSION     DATCGC010000478.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2065)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2065)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2065
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_473091"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            528..1223
                     /locus_tag="VIJ87_04565"
     CDS             528..1223
                     /locus_tag="VIJ87_04565"
                     /inference="COORDINATES: protein motif:HMM:NF015510.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_process: GO:0042953 - lipoprotein transport [Evidence
                     IEA];
                     GO_process: GO:0044874 - lipoprotein localization to outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein carrier protein LolA"
                     /protein_id="HEY5443740.1"
                     /translation="MKRFSPLVFLAVAIITSVIVGAPITVKGQSAGLVSSVLNRLEKN
                     KASLKSLRAGINMEKYNSQLGTKDTLTGVVLYLPGAGRNASVRLEWKSPQHEILAVQN
                     GKYVLFRPRLLTAYTGNSTKAPKTAGGIMDMMYMSRQQLESKYQPLQDVREETLWGGV
                     STIHLTLVPKNGGYKYAEVWIDRDGMPVQSKIVEKNDDATTMRLVSIEKNVKISSDDI
                     PVKLDSNVKVIKS"
     gene            1451..>2065
                     /locus_tag="VIJ87_04570"
     CDS             1451..>2065
                     /locus_tag="VIJ87_04570"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY5443741.1"
                     /translation="MRKTKFLKLKVREASFITRALISSRHPVLAHLIPMRRCNLACGY
                     CNEYDHTSKPIDLEIIKARLDKLADLGTSIVTISGGEPMMHPELDQIIHHIRVRGMIA
                     GLISNGYYFTPERIKRLNKAGLEYLQISIDNVDPDEVSRKSLRVLDKKLRYLSEYADF
                     HVNINSVIGGGIKNPEDALTVAKRAVELDFSTTVGVIHDGDGTLK"
BASE COUNT          550 a          478 c          520 g          517 t
ORIGIN      
        1 tggagcagca ggccagcgtt cggctgtgat acccgtttac aacccccctc gcgacagata
       61 gaatcaattg acccgccagc tgcggtcatc gtggctgatt acttgctagc tttgaggacg
      121 tgcgaggcct gttaaccaca ctgaaaaaga tcttcttctg gaattacgcg cgaaacacct
      181 ggcaatggga tgttctttgt gtcatctgtt tgatttttat ctttttgacg ccaaagagct
      241 ggctttcaag tggcgaacga cctcaggcaa aggagcatca aagcccagtt gtacaaaccc
      301 tcgttctagc ccctgaagtt gttgtaaatg aatcagatac agggcaaatc gaacagcgaa
      361 tccgagcgct taccggacgt tccaaggcag aggtggtagc tgttcgaaaa gtggtaggcc
      421 ctgatgggcg agcggtcagc ttcgaggttg acataaagtg acctttccct ataattgcac
      481 ggttttttgc gtgcagggga agcagttatt gaacttaagg agtgcatatg aagagattta
      541 gtcccctggt ctttctagct gtagccatca ttacgtcagt tattgttggt gccccgatta
      601 cggtgaaagg tcagagcgct gggctcgtga gctcggtgct aaatcgtctc gaaaagaata
      661 aagcgagttt gaaatcgctc cgtgctggca tcaacatgga gaaatacaac tctcagctcg
      721 gaacaaagga tactttgacc ggggttgtgt tgtacctccc gggagcaggc agaaacgcat
      781 ccgttcggct tgaatggaag agccctcagc atgagattct tgcggtgcaa aacggaaagt
      841 atgttctgtt tcgtccgcga ttgttaactg cctacactgg aaattctaca aaggcgccaa
      901 aaactgcagg tgggatcatg gacatgatgt acatgtctcg tcagcagctc gaatcgaagt
      961 atcagccgtt acaagatgtt cgagaggaaa cgctgtgggg tggtgttagt acgatccact
     1021 taactctcgt tcccaagaac ggcggttaca aatacgctga agtttggatc gaccgagacg
     1081 gaatgccagt acagagcaaa atcgtagaga aaaacgatga tgccactacg atgcgcctgg
     1141 tttcgatcga gaagaacgtc aagatttcgt cggatgatat tccggttaag ctcgactcaa
     1201 acgtcaaagt aatcaaaagc taaccaagaa ggaaaaatct aagtcctaat gaagggctct
     1261 gtcacacaac agagcccttc gtcattttgt gaagggaatt gcgaccatgc gtagcgtccc
     1321 tggtaacacg gagaaatccc ggagccagga cactatcgtc tcaagacctt tcttgcgttc
     1381 ttgtatttgg tcggatattg ttcgcctcaa agttaagtcc atctagtttc gctattaatc
     1441 gtctcgagta atgagaaaga ccaagtttct aaaactaaaa gtgcgcgaag cgagcttcat
     1501 cactcgcgct ttgatatcca gccggcatcc agttctcgcc catctgattc ccatgcgtcg
     1561 ctgtaatttg gcgtgtggct actgcaacga gtacgaccat acttcgaagc caattgactt
     1621 agaaatcatc aaggcgcggc tcgacaagtt ggcggacctt ggcacttcca tcgtcacaat
     1681 ctccggtggc gaaccgatga tgcatcccga actggatcag atcatccatc acatcagagt
     1741 gcgcggcatg attgctggtt tgatttccaa tggttactac ttcactccag aacgaatcaa
     1801 gcgactcaat aaggcaggac tcgagtatct gcaaatcagc atcgacaatg ttgatcctga
     1861 tgaagtctcg cgtaagagtt tgcgtgtact tgataagaag cttcgttact tgtctgagta
     1921 cgccgacttt cacgtaaaca tcaactcggt aattggtggt ggaatcaaaa accctgaaga
     1981 cgcactgaca gtggccaagc gtgccgtcga gttagatttc tcaacaaccg ttggtgttat
     2041 tcacgatggt gatggaactc ttaag
//
LOCUS       DATCGC010000479         2277 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_339682, whole genome shotgun sequence.
ACCESSION   DATCGC010000479 DATCGC010000000
VERSION     DATCGC010000479.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2277)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2277)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2277
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_339682"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..647)
                     /locus_tag="VIJ87_04575"
     CDS             complement(<1..647)
                     /locus_tag="VIJ87_04575"
                     /inference="COORDINATES: protein motif:HMM:NF014868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide reductase N-terminal alpha
                     domain-containing protein"
                     /protein_id="HEY5443742.1"
                     /translation="MSAAFGKEVTTDTVSSPSASPRRKPRPLGLNAKKVVSKRYSLKD
                     SKGRAIEEWSDIVRRVVGHVSAAETGEKRDKFFAAMSEVMLEREFVPNTPCLVNAGKA
                     NGQLAACFVLDIPDSLQGIMDHAKAAATIHQTGGGTGMTYEFLRPSGAMVSSATGVAS
                     GPVSFMNIVNQVTDVVKQGGVRRGANMGMMRVTHPDVLRFIHAKNDQHSLTNFNIS"
     gene            complement(1109..1948)
                     /locus_tag="VIJ87_04580"
     CDS             complement(1109..1948)
                     /locus_tag="VIJ87_04580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443743.1"
                     /translation="MAEFPKFDLKYLKEAFKEPINFWGMAGFAVATAYVQDITPLVAA
                     LAAETLYLATVPASSVYRRLVDRREKQRLLKLREQQREALIKLFDPREREAVEYLRWM
                     KNQIYSNYKKFTGTKEIPHNIESLDQRWEDFVDLLDVYRRRKHHLRSINRQAVQNQLV
                     QAERSVASSKDDRERRIQQANVEILKRRVAAFNDIERSVKLVEGQLQSIENFFGLVND
                     QVVTLPTPERVSSLDFEQLSDSIAMTKQMLEETSDTFAALDSHNRDIGNYELLLSNSG
                     TGK"
     gene            complement(2004..>2277)
                     /locus_tag="VIJ87_04585"
     CDS             complement(2004..>2277)
                     /locus_tag="VIJ87_04585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443744.1"
                     /translation="LGDDASTFNEMRDKIDRRAAAAEAKMQLGAASVDTQMQDIEREA
                     MDMQLQDKLLAYKKDMGLLGVGTSAPAPQALPAEGETSNSGNNGTG"
BASE COUNT          521 a          597 c          561 g          598 t
ORIGIN      
        1 gagatattga agttagtcag cgaatgctga tcgttcttgg cgtgaataaa acgaagcacg
       61 tcaggatgcg ttacgcgcat catgcccatg tttgccccgc gccggacgcc accctgcttc
      121 accacgtctg tgacctggtt gacgatattc atgaacgaca ctggccctga agcgacaccc
      181 gttgcggaac taaccatcgc tcctgaaggc cggagaaatt catacgtcat tccggtacca
      241 ccaccggttt ggtgaattgt cgccgcagcc ttggcgtgat ccatgatgcc ttgcagagag
      301 tcagggatat cgagcacaaa gcaggcggct aactggccgt tcgctttgcc ggcgttgacc
      361 aggcaagggg tgtttggcac gaattctcgc tcgagcatta cttcgctcat cgccgcaaag
      421 aacttgtctc ttttctcccc agtttcggca gccgaaacat gaccaacgac gcgtcgaaca
      481 atatcggacc attcctcgat cgcacgtcct tttgagtcct tgagtgagta gcgtttgctg
      541 acaacttttt tggcattgag tccgagtggc cgcggctttc gacgcgggct agccgatggg
      601 gaactgactg tatctgtggt gacttctttg ccgaaagctg cgctcatctt ctctgccttt
      661 ctcacgggga gtccgagagt aaatcgagtg tcaaaaacgg gagtgcctta acgtattact
      721 acgcaggcct ataacttaga gtgtgttgct gataccccgg ttggctctat tcgaagcgac
      781 aacaccctgt ctggaagagc agttcaggag gtcggccgct gcaccagtta ctcacttcgt
      841 ctcaagcgga gcggaatata ctcctttgac tagccagtgt caatatcttg tggccatctt
      901 ttttttcaat gctatagagt gtattcccta agccgccaca ttaacaagta agttgctgaa
      961 agcgggtagg ttttgccctt gcagcacggg catttggagg ttgagtcttg gttcttgggg
     1021 ctcccgcgtt gaaggcaacc tgctttaggc tatgcagcct gaagacgcag atctacggcg
     1081 ccaagaccta agaccaaagg ccaaagacct acttcccagt tccgctattt gaaaggagaa
     1141 gttcgtagtt accgatgtct cgattgtggc tgtcgagcgc ggcaaatgta tcggaggttt
     1201 cttcgagcat ctgtttcgtc atggcgattg aatcgctgag ttgctcgaaa tccaaagagg
     1261 aaactctttc gggagttggt agggtaacaa cctggtcatt aacaagaccg aagaaattct
     1321 caatcgactg taactgacct tcgaccagtt tcactgaacg ctcgatgtcg ttaaatgccg
     1381 caacacggcg cttcaatatc tcgacgttcg cttgttgaat acgacgttca cgatcatcct
     1441 ttgaggaagc gactgaccgc tcagcttgca ccaactgatt ctgtacagcc tgccgattaa
     1501 tagaacgcag gtgatgtttt cgacgccgat aaacatccaa gagatctaca aagtcttccc
     1561 aacgttggtc gagactctcg atgttgtgtg gaatctcctt ggtaccggta aactttttat
     1621 agtttgaata aatctgattc ttcatccagc gaaggtattc gactgcctct ctttcgcgcg
     1681 ggtcgaaaag cttaatcagc gcttcccgct gttgctcgcg caatttcaag agtcgctgct
     1741 tttcgcggcg atccacaaga cgtcgatata ctgaacttgc tggcacggtg gctaggtaca
     1801 gagtctctgc tgctaaagcc gcgactagcg gtgttatgtc ctgcacatag gcagtggcaa
     1861 ccgcaaatcc agccatcccc caaaagttta tgggttcctt aaatgcttct ttcagatact
     1921 tgagatcaaa ctttggaaac tctgccataa acttattgag acccgaattg caaagcatgg
     1981 agtcgttacg gctgcatcac tggtcagccc gtaccgttgt tgccactatt gctcgtctca
     2041 ccttccgccg gtaatgcttg cggcgctgga gcactagtac caacacctaa caaacccatg
     2101 tctttcttgt aagcaagcaa tttatcctgc aactgcatat ccatcgcttc gcgttcaata
     2161 tcctgcattt gcgtatcaac ggatgcggcg cctagttgca tcttggcttc tgccgcggca
     2221 gcacgccgat cgatcttgtc gcgcatttca ttgaacgtcg aagcgtcatc gccaagt
//
LOCUS       DATCGC010000480         1107 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_372953, whole genome shotgun sequence.
ACCESSION   DATCGC010000480 DATCGC010000000
VERSION     DATCGC010000480.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1107)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1107)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1107
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_372953"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..712
                     /locus_tag="VIJ87_04590"
     CDS             <1..712
                     /locus_tag="VIJ87_04590"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY5443745.1"
                     /translation="KPLNDISFEVRRGEIVGIAGVEGNGQTELMEALAGLIEPSKLSG
                     QMDFAGTDLIRKDARSRRELGIAHIPEDRHRRGLLLDFSLAENSILGVHYRKPIASSL
                     GEIFLDDGAIQDRVNDIIKNFDVRPPNPVLPAKALSGGNQQKLIIGREFHVHPKLLLV
                     SQPTRGVDIGAIEFIHRKLVELRDGGCAVLLISAELEEVTSLADRLLIIHEGKIAGEV
                     DPKVATLEEIGLLMTRGH"
     gene            794..>1107
                     /locus_tag="VIJ87_04595"
     CDS             794..>1107
                     /locus_tag="VIJ87_04595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443746.1"
                     /translation="MKTLFKELLFPLIAVLAAFVVGGILILLVGDNPIVAYRLLLGSA
                     LSWPDGIGQTLFNATPLIFTGLAVLVGFRCGLFNIGAEGQLYVAAFATAWVGITFANL
                     PAV"
BASE COUNT          249 a          269 c          306 g          283 t
ORIGIN      
        1 gaaaccgtta aatgatattt cattcgaggt tcggcgcggc gagatcgtcg gtatcgcagg
       61 cgtcgaagga aacggtcaga ccgaattgat ggaggcgttg gctggtctca tcgagccctc
      121 aaagctatca ggtcaaatgg attttgccgg gactgatctt attcggaagg atgcgcgttc
      181 tcgccgtgag ttaggcatcg ctcacatccc ggaagatcga catcgtcgtg gtttgttgct
      241 cgattttagt ctcgctgaaa actctattct cggcgtgcat taccgcaaac caattgcctc
      301 tagtctcgga gagatctttc tggacgatgg cgccattcag gaccgggtaa acgacatcat
      361 caaaaacttc gatgttcgtc ctccaaatcc agtactgccg gccaaagctt tgtccggcgg
      421 caaccaacag aagctgatta tcgggcgtga gtttcacgtg catccgaaat tgctgttggt
      481 gtcgcagccg acacgtggcg tcgacatcgg cgcgattgag tttatccatc gcaagttggt
      541 tgaactacgt gatggtggct gcgcggtgtt gttaatctca gcggagttgg aagaagtgac
      601 aagtctcgcc gaccgactgt tgataattca tgaaggcaag atcgccggcg aagttgatcc
      661 gaaggtcgcg acgttggaag agatcgggtt gttgatgacg aggggacatt agtcagtagg
      721 caccaagcag taggcagcag caccaagtac aaagctctag cgcgaagaca aagcacacag
      781 taccaaacca ttgatgaaga ctctcttcaa agaactgctc ttccccttaa tagcagtcct
      841 cgcggctttt gtcgtgggcg ggattctgat cttactcgtc ggcgacaatc cgatcgttgc
      901 ctatcgattg ctacttggta gcgccctctc atggcccgat gggattggcc aaacactttt
      961 taatgcaaca cctttaattt tcaccggact cgccgtgctg gtgggctttc gttgtggtct
     1021 cttcaatatc ggtgctgaag gtcagctata tgtcgctgcg tttgcgacgg cctgggttgg
     1081 gatcacgttt gcaaacttac cggctgt
//
LOCUS       DATCGC010000481         2270 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_473205, whole genome shotgun sequence.
ACCESSION   DATCGC010000481 DATCGC010000000
VERSION     DATCGC010000481.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2270)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2270)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2270
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_473205"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2270
                     /locus_tag="VIJ87_04600"
     CDS             <1..>2270
                     /locus_tag="VIJ87_04600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443747.1"
                     /translation="TIKRPLTHKDYDSWRSIQASQISRDGKFIAYAYVPQDGDGEIVV
                     RSVASTTEWRAPRGYRPPVPPPDDPGANVAEFVAGQGRLLRPVFTADSRFIVFGTEPT
                     KAELNKAKKDKKKPEEMPKNGLGIMDLSNGNVVKIERVKNFQVPEDGSGFIAYLMEAP
                     LPEKANPPPKDGAATPSESPAPAVQPAPARPQSGRGARKKEYGTDLVLRDMAAGSERK
                     FPDVLDFTFSKDAKTLVFATSSKKEDTNGVYSVTPQTDGTPVVLLTGKGKYQRLTWDE
                     DNTQLAFISDKDDAEAKQPRFKLYHWNRKENPATEIVSTSSPGFRKEFVISDKANLSF
                     SLDGSRLFLGVAPPPEPEKTADEEVAADEKVMVDLWHWKDDYIQPIQKVRAEQDRNRS
                     YRAVYNIADKKFVQLADDSMEGLSPSNDGSLAIGSDNRKYRVMADYDPGFTDYYLVNT
                     SDGSRKPLSAKQRGNYSLSPGGKFAIYFDGKDWNSYSVSNGQTVNLTANIKSQFFNED
                     NDSPQTPGSYGIAGWTKDDHDVLIYDRYDIWQVSPDGSNAKNLTDGAGRKEKTALRYV
                     RLDPRERSIDPDKPMLLQAENEDTRDAGFFRDKVNSTLPPQKLLMAAKDFGNPTKAKD
                     ADVLMLTAARFDQFPDLWVTNGDFRDLKRLSNGDAQRSQFNWGTGELVSFKNTDGVPL
                     KGILLKPENFDPKKKYPMIVYIYERLSQGLHQFRSPGPGTSINPTYYVSNGYLVYMPD
                     IVYTIGYPGPSALKCV"
BASE COUNT          612 a          596 c          599 g          463 t
ORIGIN      
        1 ccacaataaa acgccctctc actcacaaag actacgactc gtggcgatcg attcaggcat
       61 cccaaatttc ccgcgacggg aagttcatcg cctacgcata tgtgccgcag gatggtgacg
      121 gagagatcgt tgtgcgcagc gttgcgagca caacagagtg gcgcgcgccg cgtgggtatc
      181 ggccgccagt gccaccgccc gatgatcctg gtgccaacgt tgcggaattc gtcgctggac
      241 aagggcgttt gctgcgcccc gtttttacgg ccgatagtcg ttttatcgta ttcggtaccg
      301 aaccaaccaa ggctgaactc aacaaagcaa aaaaggacaa gaagaagcct gaagagatgc
      361 ccaagaacgg actgggaatc atggatctct ccaacggcaa cgtggtgaag atcgaaaggg
      421 tgaagaactt tcaggtacca gaagacggat ccggttttat cgcttacttg atggaagcac
      481 cactacctga aaaggcgaac ccacccccaa aggacggagc ggcgacgcca tcggagtcac
      541 ccgcaccagc ggtgcaacca gcacctgcgc gtcctcagtc aggtcgcgga gcaaggaaga
      601 aggaatacgg caccgactta gttttgcgtg acatggctgc cgggagcgag cgcaagtttc
      661 ccgacgtcct tgatttcact tttagtaaag acgccaagac gctcgtcttt gcaacctcat
      721 caaagaagga agacacgaat ggagtctatt cagtaacacc acagactgac ggtacgcctg
      781 tggtactgct aaccggcaaa ggaaaatatc agcgcctcac ttgggatgaa gacaacacgc
      841 agctggcatt tatcagcgat aaagacgacg cggaagcgaa gcaacccagg ttcaagctct
      901 atcactggaa tcgaaaagag aaccccgcaa ccgagatcgt ctcaacttca tcgccgggat
      961 tccgtaaaga gtttgtaatt agcgacaaag ccaacctgag tttctcactt gatggaagtc
     1021 gcttgttcct gggcgtggcg ccgccgccgg aaccggaaaa gactgctgat gaagaagtcg
     1081 cggcagacga aaaggtcatg gttgatctgt ggcattggaa agacgactac attcaaccga
     1141 ttcaaaaagt acgcgcggaa caggaccgaa accgatcgta tcgagctgtt tacaacattg
     1201 ctgacaagaa atttgtgcaa ctcgccgacg attcgatgga aggactatca ccatccaacg
     1261 acggcagtct tgcgattggc tccgataatc ggaagtaccg ggtgatggct gattacgatc
     1321 ccggctttac ggattactac ctcgtcaaca cgtccgatgg ttctcgcaaa ccgctctccg
     1381 ccaaacagcg tggaaactat tcgttatcgc caggagggaa gtttgcaatc tacttcgatg
     1441 gcaaagactg gaactcttac tcagtttcta atggtcaaac ggtaaacctt acggccaata
     1501 tcaagtcgca attcttcaac gaagacaacg actccccaca gacacctggt tcatacggca
     1561 ttgcgggttg gactaaagac gatcacgacg tcttgatcta tgaccgttac gatatttggc
     1621 aggtgtcgcc tgatggaagc aacgcaaaga acctgactga tggcgccggt cgaaaagaga
     1681 agaccgcact tcgttacgtg cgacttgatc ccagggaacg ttccatcgat ccagataagc
     1741 caatgctatt acaagccgag aacgaagata ctcgcgacgc gggattcttc cgcgacaagg
     1801 tcaacagcac tctgccgcct caaaaactgc taatggcagc gaaggacttc ggcaacccaa
     1861 ctaaagcgaa agacgctgac gtgttgatgt tgaccgcggc tcgcttcgat cagtttccgg
     1921 atctgtgggt aacgaatggt gacttccgtg atctgaagcg attgagtaat ggcgacgcgc
     1981 agcgttctca gttcaactgg ggcaccggcg agttggtgag tttcaagaac acagatggtg
     2041 ttccgttgaa aggcatactt ctcaaaccgg aaaacttcga tccgaagaag aagtatccga
     2101 tgatcgttta catctacgag cggctctcgc agggcttgca ccagtttcgc agtcccggac
     2161 caggcacgtc gatcaatccg acgtactacg tgagcaacgg ttatctggtc tacatgccgg
     2221 acatcgttta cacgatcggg tatccgggtc ccagcgcttt gaagtgcgtg
//
LOCUS       DATCGC010000482         1459 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_339744, whole genome shotgun sequence.
ACCESSION   DATCGC010000482 DATCGC010000000
VERSION     DATCGC010000482.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1459)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1459)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1459
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_339744"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1296
                     /locus_tag="VIJ87_04605"
     CDS             <1..1296
                     /locus_tag="VIJ87_04605"
                     /inference="COORDINATES: protein motif:HMM:NF021126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhO family protein"
                     /protein_id="HEY5443748.1"
                     /translation="LLLFGLRGLSFADQSRKISRPVLFATTLVLVGLVLGASWGAASV
                     NRSLLVFVVITLLLYTQITAGLLVGKYKRLWETAIIALVCVEIAYLSGITVNKRPVVT
                     AAELSQRVGFNDYTVDAARYLETQDHDFYRLSKDYSSGPAIHPSFNDAKVQRYYGSRS
                     YDSFNQENYVHFLEGMNAMPSGNETASRWAEGLNRPMLQILGSVKYALTKSADNNLQA
                     NGYRLMASFGDVLLYRNSYYLPLGFAYDSFVLASDFSRLNTAQKDRALLKAFVIDDSQ
                     EKHFSGLQQLQTLSLTDDYPAAELQTDLSSRRARTLSMIEHGQNRIRGTITIDKRQLL
                     LFSIPFDVGWSALVDGKSARLEKVDFGMTGILLDPGEHSVELKFRPRFLTLGMIVSSG
                     AAVVFLGLLFLMRRPRALRVTVASSLFFRWCSRSDAWPI"
     gene            1280..>1459
                     /locus_tag="VIJ87_04610"
     CDS             1280..>1459
                     /locus_tag="VIJ87_04610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443749.1"
                     /translation="MLGQSEDALRDADKAVSEDPKDEEAYNSRGLANRALSRLNEAVN
                     DFGLAIHIKEDYSRPY"
BASE COUNT          336 a          361 c          392 g          370 t
ORIGIN      
        1 cttctgcttt tcggattacg ggggctgagt tttgcagatc aatctcgaaa gattagccga
       61 ccagttcttt ttgctaccac gctggtcttg gtggggctag tcctcggagc atcatgggga
      121 gctgccagcg tcaatcgaag tttgctcgtc ttcgttgtga ttacgctatt actgtataca
      181 cagataaccg cgggtttgct ggttgggaag tataaacgtt tgtgggagac cgcgatcatt
      241 gctctggtgt gcgtcgagat tgcttatctc tcaggaatca ccgtcaacaa aagaccggtt
      301 gtgactgcgg ccgagctatc gcaacgggtc ggattcaatg attataccgt agacgcggca
      361 cggtatctcg agacgcagga ccatgatttc tatcgactga gtaaagatta ttcttcaggg
      421 cccgcaatac atccaagttt caacgacgcg aaagttcagc gttactacgg gtcccgttcc
      481 tatgattcct tcaatcaaga gaactatgtt cactttcttg aaggaatgaa tgctatgccg
      541 agtggcaacg aaaccgccag ccgctgggca gagggactca acaggccgat gctccaaatt
      601 ctgggaagcg tcaagtatgc tcttacgaag agtgcggaca acaatcttca ggccaacggc
      661 tatcgactga tggcttcttt cggagacgta ctcctttatc gaaacagtta ttatctcccg
      721 ctggggtttg cttacgattc gtttgtgctg gcgagcgact tttccagact caatactgcc
      781 caaaaagacc gcgcgctcct aaaagcattc gtgattgacg attcccagga gaagcacttt
      841 agcggattgc agcaacttca aactcttagc ctcacggatg actatccggc agcggaactt
      901 caaaccgacc tcagctcgcg acgggcacgg acgctctcga tgatcgagca cgggcagaac
      961 aggatccgcg gcacaattac aatcgacaag agacaactgc tattgttttc tattccattc
     1021 gatgtgggat ggtctgcgct cgtcgatggc aagtcagcgc gccttgagaa ggtcgatttc
     1081 ggcatgaccg gaattttact ggatccgggc gaacactccg ttgagttgaa atttcggcca
     1141 aggttcctga ctttggggat gatcgtctca tcgggagctg cggttgtctt tcttggtttg
     1201 ttattcttga tgcgcagacc tagggctctg cgggtaacgg tagcatcctc tttgtttttt
     1261 aggtggtgct cgcgaagcga tgcttggcca atctgaggat gctcttcggg acgcggataa
     1321 ggcagtaagc gaggatccca aggacgagga agcctataat agccgcggcc tggcaaaccg
     1381 cgctctcagc aggctgaacg aagccgtgaa tgatttcggc ctcgccatcc acatcaagga
     1441 agattactcg cggccctat
//
LOCUS       DATCGC010000483         1121 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_440355, whole genome shotgun sequence.
ACCESSION   DATCGC010000483 DATCGC010000000
VERSION     DATCGC010000483.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1121)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1121)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1121
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_440355"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(135..854)
                     /locus_tag="VIJ87_04615"
     CDS             complement(135..854)
                     /locus_tag="VIJ87_04615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443750.1"
                     /translation="MHLFHQVVIVILTTPALFTISIRQQGAPPVKQTEEVVQAYRVCE
                     QFQKVLSHNLDFNAAFEATFTKNKTRQRAIAIKDGEFGDLEYANVEDQTLINAYKARM
                     QLLYLMFPLASPGDNEEAIFFPPHIKAMFTRKGPDTAAGFAAFASQVDKDTKDFRLHL
                     DNLAAKYPSVAERIRKFKSDLVTGDFLPPKSRVVEPMKYDGGGAVLSKDESYYQIEGC
                     TVVREGGEMKIAGIKFFTRMF"
BASE COUNT          270 a          270 c          283 g          298 t
ORIGIN      
        1 ctatgcgaga taaggaggag aggaacgaat acaagcttct agcgaactgg gccataaacg
       61 ggtgctcgtg cacgtaggag taatgaggaa ctaatcaagt tgtgctgggc agttgttagt
      121 tcccggcagc tcgattagaa catccgggtg aagaatttga ttcccgcgat cttcatctca
      181 ccgccttcac gcacaaccgt gcaaccttcg atctgataat acgattcgtc cttacttaag
      241 acggctccac ctccgtcata cttcattggc tcaacaaccc tggacttcgg tggtagaaaa
      301 tcaccggtaa ccaaatcgct cttaaacttt cggatccgtt ctgcgacgct cggatactta
      361 gctgcaaggt tatcgagatg taagcgaaag tctttagtgt ccttatcgac ttgcgatgcg
      421 aaggcagcaa atcccgcagc tgtgtctggt ccttttctgg tgaacatcgc cttgatgtga
      481 ggcggaaaga agattgcttc ctcgttgtca cccggacttg cgagcggaaa catcaaatac
      541 aaaagctgca tacgagcctt gtaagcgttg attagagttt gatcttcaac gttcgcatat
      601 tcgaggtcgc cgaactcccc gtctttaatt gcgatcgccc gttgtcgtgt tttgttcttc
      661 gtgaacgtcg cttcgaaagc tgcattgaag tccagattat gactgagaac tttctgaaac
      721 tgttcgcaga cacgataggc ctggactact tcttcggttt gttttaccgg gggcgcccct
      781 tgttgtcgga tcgagatcgt gaagagggct ggcgtggtta gtatgacgat aacgacctgg
      841 tgaaatagat gcatactgag tagtttggac tttgtcagac ttgattccaa gagaatttaa
      901 cctttcctga ataaggcctg tcgctaagtt gtttattcgc ccgcccgcac cactaaacaa
      961 catcctttcg agcgcccttg ccgcccgctt gaggggatga gaccgggatt aagtggaaac
     1021 tgagacacca ccggcatgaa gccggtggtg tcatttctca tgtggtccac gcttttcatc
     1081 ggtgtgatac tagaacaagc acaacacagt gccggatagt g
//
LOCUS       DATCGC010000484         1026 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_174566, whole genome shotgun sequence.
ACCESSION   DATCGC010000484 DATCGC010000000
VERSION     DATCGC010000484.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1026)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1026
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174566"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..594)
                     /locus_tag="VIJ87_04620"
     CDS             complement(<1..594)
                     /locus_tag="VIJ87_04620"
                     /inference="COORDINATES: protein motif:HMM:NF013736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEY5443751.1"
                     /translation="MEPSTQKLIHTFGALADLGQEVASAGDFSEMVRTSMHLLLGTLA
                     LRRGVVAECSSSGALNCVAVWGLREDLLSALSITDDERKELLESPKPALLVDETSSRF
                     LGRYSDGLLDEGLELAVPMIVRDELTGFVLLGGKASGEGFSAEDFETIRAMVRHIGVG
                     IHTHRLVEQVARRAEENRRLYEELRAIYRDTVRAFAAA"
     gene            complement(602..994)
                     /locus_tag="VIJ87_04625"
     CDS             complement(602..994)
                     /locus_tag="VIJ87_04625"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEY5443752.1"
                     /translation="MDISSVSDVKSHCVGTTAVVYASDYLNKLTGEKIERECRRQLDQ
                     GCRALVIDFADTQLVNSIGISILLGIIDVAEKNKAQVVFADVNNQTVELFDMLGLTRH
                     VALAKDEQEALLTLSTTVSGFDSTPTVH"
BASE COUNT          242 a          293 c          247 g          244 t
ORIGIN      
        1 agcggcggcg aaggcgcgaa ccgtgtcgcg ataaatcgca cgcaactctt catagagccg
       61 gcgattctct tcggcacgcc gggccacttg ctcgaccagc cggtgggtat gaatgccaac
      121 cccgatgtgt cgcaccattg ctctaatggt ttcaaagtct tcagctgaga agccttcccc
      181 actggctttg ccaccaagca gtacaaaccc ggtcaactca tcgcggacga tcatcggaac
      241 cgctaactca agtccctcat ccagcaatcc atcactatat cgccccagga atcgtgaact
      301 agtttcgtca accaacaaag caggttttgg cgactcgagc agttccttcc gttcgtcgtc
      361 ggttatggac agcgcactta gcaaatcttc gcgcagtccc cagacggcaa cgcagttcaa
      421 cgcgccactg ctgctacatt cagcaacaac gccgcgtcgt aaagcgagag tgcccagcaa
      481 gaggtgcatg gaagtacgca ccatctcgct gaagtcaccc gcactcgcta cttcctgacc
      541 aagatctgcg agtgcaccaa aagtgtgtat gagtttttgt gtagatggct ccatgcgact
      601 cttagtggac tgttggcgtc gagtcgaagc cagacactgt ggtagacaaa gttaagagcg
      661 cctcttgctc gtcttttgct aatgctacgt gtcgggtgag tcccaacatg tcgaacaatt
      721 caactgtttg attgttaacg tcggcaaaga cgacttgcgc tttgttcttc tcagctacgt
      781 cgataattcc caggaggata gagatgccga tactgtttac aagctgagta tctgcgaaat
      841 cgatcaccag cgcccgacaa ccctgatcca gttgtcgtcg acactcgcgt tcgatttttt
      901 ccccggtaag tttgttgaga tagtcgctgg cgtaaacaac cgcagtagta ccgacgcagt
      961 gtgactttac gtcactcacg gatgagatat ccactcagta gctccctcct gctacgaatg
     1021 ttactt
//
LOCUS       DATCGC010000485         1035 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_140351, whole genome shotgun sequence.
ACCESSION   DATCGC010000485 DATCGC010000000
VERSION     DATCGC010000485.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1035
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140351"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            253..1035
                     /gene="selD"
                     /locus_tag="VIJ87_04630"
                     /pseudo
     CDS             253..1035
                     /gene="selD"
                     /locus_tag="VIJ87_04630"
                     /inference="COORDINATES: protein motif:HMM:TIGR00476.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0004756 - selenide, water dikinase
                     activity [Evidence IEA];
                     GO_process: GO:0001887 - selenium compound metabolic
                     process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
BASE COUNT          250 a          239 c          292 g          254 t
ORIGIN      
        1 gatcgatcca gatggcttac caatctcctt cgcccaacta atcaacgaag gcgctggaaa
       61 ataacctgac aaattgggcc acagataata cagatacaca cagatcatag agccgttaaa
      121 gacgttcgtt ttggctggat ctgtgtttat ctatctgatc tgtggctata cttttgtcca
      181 aatcacgaaa ggaggtagct atcgatgcgt ttgactgaga tggtttcgtg ctctggttga
      241 gcggcgaaac ttagcccgag cttactcgct caagtgttga gcgggcttcc gacacaacca
      301 cacgacccaa atttgattgt cggttttgat acggccgacg acgcgggagt ataccgtcta
      361 cgcgacgacc tcgctttggt ccagacgctc gacttcttta ctcctattgt cgacgaccct
      421 ttcgactacg gccgcatcgc cgcattgaat tcaatcaacg acgtctgggc gatggctgga
      481 acaccgatca ccgcaatggc aatcacttgt ttccccaaga agggtgtaga tccggcgatt
      541 cttggtgaga ttatgcgcgg cggtcttgag acactgaaca aatatggaat cacgttgatt
      601 ggcggtcaca gcgtcgataa tgaacagatc atgtttggct actcggtgac aggagtgatc
      661 gacccaaaca aagtggctcg caatgccggg gcaaaggttg gcgacgtcgt cattttgact
      721 aagccgattg gtactggagt tatttcaacg ggaatcaaaa gagggcaggc gagcgaggca
      781 atcgtcagcg ggtcagtggc cacaatgttg acgcccggga agtttgctgc ggaagcgatg
      841 cgagagtttg acgttactgg cgcgaccgac gttacagggt tttcattgtt gggtcatatg
      901 tgggaaatgg cctgcgcgag taaggtcacg attgagatcg atgcgtcgtc tgtgccatta
      961 ctcgagggtg ctttggaatt ggcgactcag ggaatgttga ccagcggcga caagaccaat
     1021 cgtgagtatg ttggt
//
LOCUS       DATCGC010000486         2168 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_240583, whole genome shotgun sequence.
ACCESSION   DATCGC010000486 DATCGC010000000
VERSION     DATCGC010000486.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2168)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2168)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2168
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_240583"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..496)
                     /locus_tag="VIJ87_04635"
     CDS             complement(<1..496)
                     /locus_tag="VIJ87_04635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443753.1"
                     /translation="MALLLLVSFSAACGKRRPPLPPTERVQQRTELLSGAQQGNEVIL
                     TWPAPLRNAPDSSVQSIRRIDVYRLAEKPDARRGLTEDEFAAKATLVGSVTYEQIRNA
                     GESLTYADALELTGTPARLRYAVRYVNASGQRAAFSNFLLIEPAVRIAQPPTMQRTGK
                     EVTED"
     gene            complement(591..2024)
                     /gene="hslU"
                     /locus_tag="VIJ87_04640"
     CDS             complement(591..2024)
                     /gene="hslU"
                     /locus_tag="VIJ87_04640"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003740291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HEY5443754.1"
                     /translation="MAIYLPGTLEEEQLSLDELTPREIVAELDKYVVGQKDAKRAVAI
                     ALRNRMRRQKLAPDLAEEIMPKNIIMIGSTGIGKTEIARRLARMSNSPFLKVEASKFT
                     EVGYVGRDVESMIRDLTEISIEITRQEKSEEVAEKAELNVEERILDLLLPPLRSNAGY
                     FDFDSETSEEETTEEADSPAKDEQFQRTREKLRTQLRSGKLDNRLIELEVREKNFPVI
                     ELAGPQGVEEMGINMKDMLGNLFQGRTKRRKMRVDEAIEYMMQEEEERLIDMDQVARA
                     AIERVENSGIIFLDEIDKIAGRESGHGPDVSREGVQRDILPIVEGTTVNSRYGMVRTD
                     HILFIAAGAFHVSKPSDLIPELQGRFPIRVELESLTIEDFKRILTEPRNALIKQYQAM
                     METEGVTIEFTGDAIDSIANFAAQVNQQTEDIGARRLQTIMEKLLEEISFEGPDLEPK
                     KQRIDAAYVENMLSATVKDQDLSRYIL"
BASE COUNT          484 a          583 c          517 g          584 t
ORIGIN      
        1 catcttcggt tacttccttg ccagtgcgtt gcatcgtcgg tggctgtgca atccggacgg
       61 cgggttcaat caacaggaag tttgaaaagg ctgcgcgttg tcctgaagca ttaacgtacc
      121 gcaccgcata acgaagtcga gccggcgtac cagtcaattc gagagcgtcc gcataggtta
      181 aagactcgcc ggcgttcctg atttgctcat acgttacaga gccaaccagc gtcgctttcg
      241 cagcaaactc atcttccgtc aatcctcgcc gtgcatcagg tttctcggct aatcggtaga
      301 catcaatccg acgaatactt tgcacgctgc tatccggcgc gttgcgcagt ggtgctggcc
      361 aggtcaggat cacttcattg ccttgctgtg cacctgaaag cagttcagtg cgttgttgaa
      421 ctcgctcagt cggaggaagc gggggtcttc gttttccgca cgcagcagaa aacgacacca
      481 gcagcaatag tgccaagtag acggtggcgg ttcgaaagcg tttagtggaa gggatacttg
      541 aatccaagtg ggtcaacggt gggattgtcc ttcagggcga gtagtcagtt tcacaagatg
      601 tagcggctca agtcctgatc ctttacagtt gccgagagca tattttctac ataagccgcg
      661 tcgatacgtt gtttctttgg ttcaaggtct ggtccttcaa aactaatctc ttccaaaagc
      721 ttttccataa tcgtttgcaa ccggcgagcg ccaatgtctt ccgtctgctg gttcacctgc
      781 gctgcaaagt tggcaatcga gtcgatcgca tcaccggtga attcaatcgt cacgccttct
      841 gtctccatca ttgcctggta ttgcttaatg agcgcgtttc ttggttccgt aagaattcgt
      901 ttgaagtctt cgatcgtgag tgactcaagc tcgacccgaa tggggaagcg gccctgcaat
      961 tccggaatta gatcagaagg ttttgaaacg tgaaaagcac cggcagcgat gaacagaata
     1021 tgatccgtgc gaaccatacc gtaacgacta ttcacagtcg tgccctcgac aatcggcaga
     1081 atatcgcgct gcacaccttc tctcgaaacg tcaggtccat gaccggattc tctgccggca
     1141 atcttatcaa tctcgtcgag gaaaatgatt cctgaattct cgactctttc aatcgccgct
     1201 cgagcgactt gatccatgtc aataagtcgc tcttcctctt cctgcatcat gtattcgatt
     1261 gcttcgtcaa cgcgcatctt gcggcgcttc gtccgacctt gaaagagatt gcccaacata
     1321 tccttcatgt tgatacccat ctcttcgacg ccctggggtc cggcaagttc aatgactgga
     1381 aagttctttt ctcgaacctc aagctcgatg agccggttat caagtttccc gcttctcaat
     1441 tgagttctca gcttttcgcg cgttcgttga aactgctcat ctttcgcagg actatcagct
     1501 tcttcagttg tttcttcttc ggacgtttcc gagtcaaaat caaaatagcc tgcattcgaa
     1561 cgcagaggcg gaagcaacaa atcaagaatt ctttcctcaa cgttgagctc cgctttttcg
     1621 gcaacctcct cgctcttttc ctgtcgcgtt atttcgattg aaatttctgt aaggtcacga
     1681 atcatgctct ctacgtcacg acctacgtaa cctacttccg taaactttga agcctcaacc
     1741 ttcagaaacg gagagtttga cattcgtgcc aggcgccggg cgatctcggt tttgccgatg
     1801 ccggtcgaac caatcatgat gatgttcttg ggcatgatct cttcggcgag atcgggcgcg
     1861 agtttctgcc ggcgcatgcg attgcgcaag gctatcgcca ccgcacgctt cgcgtccttc
     1921 tggccgacca cgtatttgtc gagctcagcg acgatttcgc gcggcgtcag ctcatccaat
     1981 gagagctgtt cttcttccag ggttccaggt aaataaatag ccataagaaa gcagtcgtta
     2041 gtcgttgctt cgtaatcgtt agaacaaggc cgaactatcg ctgacgaggc acgtgcgcgt
     2101 attcatcttg ctacgacgac gactatgaac taatcaatca gagttcttcc accgtaacgc
     2161 tgctatta
//
LOCUS       DATCGC010000487         1082 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_406348, whole genome shotgun sequence.
ACCESSION   DATCGC010000487 DATCGC010000000
VERSION     DATCGC010000487.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1082
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_406348"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..263
                     /locus_tag="VIJ87_04645"
     CDS             <1..263
                     /locus_tag="VIJ87_04645"
                     /inference="COORDINATES: protein motif:HMM:NF021915.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HEY5443755.1"
                     /translation="YEKLLSFEKVKLKFTEGALGAIARKSFVQKTGARGLRAILEDVM
                     LDVMYDAPSQKQIKEVLITEDAILGKHPPIRIFEQDKDAKTA"
     gene            512..1018
                     /locus_tag="VIJ87_04650"
     CDS             512..1018
                     /locus_tag="VIJ87_04650"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02266 family protein"
                     /protein_id="HEY5443756.1"
                     /translation="MSSSLRHKGKTLDLDATREVVILLGINGEPMGHLSWDFVIDQIL
                     AYRKPPASREARNEPRVTLTFRVKYTTPEGQQFESRAGGIGGGGLFIESLSPPPVDTL
                     LTLEFSLPEKPAEWLPAKGLVAWVCPKADQYTFSPGMGVRFTEIDPEIRNRVLELVKS
                     LQTVGQAA"
BASE COUNT          273 a          285 c          278 g          246 t
ORIGIN      
        1 agtatgagaa attgctctcc tttgagaaag tgaagctcaa gttcacggaa ggcgccctcg
       61 gggcgatcgc acggaagtcg tttgttcaga aaaccggcgc tcgaggattg cgtgcgatac
      121 tcgaagacgt gatgctagac gtcatgtacg atgctccttc acagaaacag attaaggaag
      181 ttctcatcac agaggatgct atacttggca aacaccctcc cattagaatc ttcgagcaag
      241 acaaggatgc gaagacagcc taagccacta gaaacataga cattttttaa gaatggcaag
      301 acatcggctc gagatcctta gggccaggaa tatcctggcc cttctgcctc ttcattctcc
      361 caccaacgga aatcactcgt acgcacgctg atctttattc acgctcctaa cctagggcga
      421 tgctcatgac tctgtgcttt tcctcgacaa gaggaaatgc tgcgctatac ttgcggtagt
      481 cattgaacgt ggaggacctg tgaaatatcc cgtgtcttca agccttaggc acaaggggaa
      541 aaccctcgat cttgacgcaa ctcgtgaagt ggtcatcctc ttggggatca acggcgagcc
      601 tatgggccac ctatcctggg acttcgtcat tgatcagatt ttagcctatc gtaagccccc
      661 tgcgagtcgg gaagccagga atgagccgcg cgtgacgctt acctttcgtg tcaaatacac
      721 aacaccggaa ggtcaacagt tcgaaagtcg tgcaggaggt atcggggggg gcgggctttt
      781 tattgaaagc ctgagcccac caccagtcga cactttgctt acccttgaat tttcgctacc
      841 ggaaaaaccg gcagaatggc taccggcgaa ggggctcgtt gcatgggtct gccctaaggc
      901 agaccaatat acgtttagcc ctggaatggg agtccgcttt acggagattg atcccgagat
      961 ccgtaaccgc gtgctcgaac tggtgaaatc cctccagacc gtcgggcagg cagcctagcc
     1021 ggtccaaacg ccacagagcc cgttcgcatt cgatacaagg gtctgaccat gaaattttct
     1081 gt
//
LOCUS       DATCGC010000488         1669 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_206762, whole genome shotgun sequence.
ACCESSION   DATCGC010000488 DATCGC010000000
VERSION     DATCGC010000488.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1669
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_206762"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1606)
                     /gene="asnB"
                     /locus_tag="VIJ87_04655"
     CDS             complement(<1..1606)
                     /gene="asnB"
                     /locus_tag="VIJ87_04655"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HEY5443757.1"
                     /translation="MHGCDKRNWLVFNGEIYNHAQLRVGLEERGHKYSSRTDSETILH
                     LYEEVGLDLVHEIEGDYAIALWDADKERLVLVRDRIGVKPLYYFYKDGRFIFGSEIKA
                     IVQHPAVTRDIDEQSLYHYLTFLTTPAPATLFKDIHKLPAGHLLTLTRDGQLNIQQYW
                     DALPKPQELVRSDEEHQAEIMRLLRESISKRMMSDVPFGVFLSGGVDSSANVALMSEQ
                     MSRPVETFTVGFSDAEYLNELDSARRISKQFGTNHHEVIISEKEMSDFLPSMVFHQDE
                     PIADPVCVPLYYVSKLARDSGTIVVQVGEGSDEIFSGYENYVRHLRIYEKFWRHAESI
                     PLTLRRAVSNVSRPALEATGRKRVAIELIRRLGAGEPLFWGGAVVYDETFKPRVLSKQ
                     LLERVNGLSSLHVVEGYLKHIERECPDSDFLARMTYLELKLRLPELLLMRVDKITMAT
                     SVEARVPFLDHHLVEYALALPRALKVQGVSGKHILKRALEDVLPRDLLYERKRGFGAP
                     VREWFREGLGGWFDDHLMNSSMRRRNL"
BASE COUNT          421 a          458 c          406 g          384 t
ORIGIN      
        1 gtaaattgcg gcgtcgcatt gaagaattca tcagatgatc atcgaaccac ccaccaaggc
       61 cttctctaaa ccactcgcgc acgggtgccc caaatcctcg cttccgctcg tacaacaaat
      121 cgcgcggaag aacatcctcg agagctcgct tgagaatgtg tttcccactt actccctgga
      181 cttttaacgc acgcggtaac gcaagcgcgt attcaaccag gtggtggtcc aggaacggaa
      241 cgcgcgcttc cacactagtg gccatcgtta tcttatcgac cctcatcaac aataactctg
      301 gcagccgcaa cttcaattcg agataagtca ttcgagccag gaagtcggag tccggacact
      361 cacgttcgat gtgtttcagg taaccctcta caacatgaag cgacgacaac ccattcaccc
      421 gttcaagcaa ttgcttcgac aacactcgcg gcttgaatgt ttcgtcataa acaaccgccc
      481 caccccaaaa caacggttca ccagcaccga gtcgtcgaat tagttcaatt gccacccgct
      541 ttcggccggt cgcttcaagg gctggacggg aaacgtttga aactgcgcgg cgcaatgtca
      601 gcgggatcga ctccgcatga cgccagaact tttcgtaaat cctcaaatgg cgaacgtagt
      661 tttcataacc gctgaagatc tcatctgaac cttctcccac ctggaccacg attgtccctg
      721 agtcacgggc caactttgag acgtagtaga gcgggacaca aacaggatct gcgataggct
      781 catcctggtg aaagaccatg ctcggtaaga agtcgctcat ctctttttca gagatgatta
      841 cttcgtggtg gttagtgcca aactgttttg agattcgtcg cgctgaatcg agttcattca
      901 gatattccgc atcactgaag ccaaccgtga aagtttcaac tggccgcgac atttgttcag
      961 acatgagggc aacattcgcc gaggagtcga cgccgcctga cagaaacacg ccaaagggaa
     1021 cgtccgacat catgcgtttg ctgattgact ctcgcagcaa cctcatgatc tcggcctgat
     1081 gttcctcgtc gctacgcacc aactcctgag gcttcggcaa agcatcccag tattgttgaa
     1141 tgttcaactg cccatctcga gtaagggtca atagatgacc ggccggcagt ttgtgaatgt
     1201 ctttgaagag ggtggcggga gcgggtgtcg ttaaaaaagt caggtagtgg taaagcgact
     1261 gttcatcaat atcccgggtt acggccggat gttgaacaat tgccttgatc tcggaaccaa
     1321 aaatgaagcg accgtctttg taaaaatagt aaaggggttt gactccgatg cggtctcgaa
     1381 caagaacgag acgctctttg tctgcgtccc ataaagcgat cgcatagtca ccctcgatct
     1441 cgtgtaccag atcgagcccg acttcttcat acaggtgaag gatggtttcg gagtcggttc
     1501 gggaagagta tttatgccca cgttcttcca gcccgactcg tagctgtgcg tggttataga
     1561 tctcgccgtt aaagactaac cagttccgct tgtcacaacc atgcattggc tgatgccccg
     1621 cggccgagag atcgataatg gagagccggc gaaaacccaa agccccacg
//
LOCUS       DATCGC010000489         1236 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_473356, whole genome shotgun sequence.
ACCESSION   DATCGC010000489 DATCGC010000000
VERSION     DATCGC010000489.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1236)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1236)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1236
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_473356"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            579..>1236
                     /locus_tag="VIJ87_04660"
     CDS             579..>1236
                     /locus_tag="VIJ87_04660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443758.1"
                     /translation="MSTSKSTDTVTIPGPLRSFLRMAGISQQTPADEVLPILSRNLSL
                     LGYRGGQATEYLVLVNRYVHFARELQFIADKNGEIHIAGCDDAPRLIDILGYKFRGAC
                     GDKKSSLVTANAERAFLTIDSGFPLTELEQALQKSAPFIHPFPATQVPIFFKESAFLG
                     LTARNKNSGGNLLDMLLHDQSLDRLYWALSKCDQQTRLALQQTPGLRRLYALAPVFEL
                     Y"
BASE COUNT          278 a          343 c          313 g          302 t
ORIGIN      
        1 gctggttcga gtctagtcgc acctaccatt ttctcaataa cttacaggct gttccttgct
       61 tcccacacgc tggaacgctt ttgcgaaaaa tcaagcttca aggcgaaaac tctacgtcga
      121 ttgacacttt cgatctaaag aagacttgcc gagcgaataa tgatttgcga tgatgatgca
      181 ccggttcacg tgacttccct tacgtgcctg aagatcggat caatagcgaa gacccggttc
      241 gaaaaccgtt ccgccttgcg gctttctcct agtcatctcc gcgaggattg tctactagca
      301 gcgacagctg atttcaatct agtgaaatca ggatagattc gcgctggcga gatctgtgat
      361 gcggcttcct gcccatggtc taccacgtga gtgcagtcgg gtcggtgagg tcactttgac
      421 cctggggggc tagtcgcatg aagttccctc ttcgcttcga atccgtctgt gttgcaagtc
      481 tcttgtgctt cgcatcgtgc agtccgacgt atgctgccac gcccccacaa gaaaggtccc
      541 aatccgccgg cacgcaacga gatcggcccg aagatcaatt gtcgacgtcg aagtcgactg
      601 acaccgtaac aattcccgga ccgttgcgat cattcctgcg aatggccgga atcagtcagc
      661 agacgcctgc tgatgaagtg ttgccgatac tgtcccgcaa tctatctctc cttggctatc
      721 gtggaggaca agcaactgag tacctggtac tggtgaatcg gtatgtacac tttgctcgag
      781 aactccagtt catcgccgat aagaatggcg agatccacat tgctggttgc gacgacgctc
      841 ctcggctgat cgatattctc ggctacaaat tccgaggcgc gtgtggcgat aaaaaaagct
      901 ccctggtgac cgcaaatgca gaacgcgcgt ttctgaccat cgactcaggc ttccctctca
      961 ctgagcttga gcaagccttg cagaagagcg cacctttcat ccatcctttt ccagctactc
     1021 aggttccgat cttcttcaaa gagagtgcct tcctgggact caccgctcgg aacaagaatt
     1081 ccggcggaaa cttgctcgac atgctgctgc acgatcaaag cctggatcgg ctttactggg
     1141 cgctgtcaaa gtgcgatcag caaacaaggt tggcgttgca gcagacgcca ggactgagaa
     1201 ggttgtacgc ccttgcgccg gtctttgaat tgtacg
//
LOCUS       DATCGC010000490         1034 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_10301, whole genome shotgun sequence.
ACCESSION   DATCGC010000490 DATCGC010000000
VERSION     DATCGC010000490.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1034)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1034)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1034
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10301"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(121..648)
                     /locus_tag="VIJ87_04665"
     CDS             complement(121..648)
                     /locus_tag="VIJ87_04665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443759.1"
                     /translation="MANKTKAAGTVTSAEMQYKPVGFDSLNLDELHTIADYFGVDQAE
                     TITEQVANFAEEGVTYVQYAKAFKVPLPEDYQEEELPVVEEDEQEEPVVETGPVTAPR
                     EAQFAVQNEYLIKMTRDNPYFEVANLSNRRATYKFTTAHPYAVMDAKTAQFVLSHETG
                     FRQAFPDELAEFYSE"
     gene            complement(752..>1034)
                     /locus_tag="VIJ87_04670"
     CDS             complement(752..>1034)
                     /locus_tag="VIJ87_04670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443760.1"
                     /translation="FNAGWSPTAPFGIRAQEVPLFPEYDGPGAEGTASDVWLVDPNNL
                     IWGVKREIKVYRQFVPRKDTIEYTMFTRVGAAIENPNAAVLIKNVPLSA"
BASE COUNT          229 a          251 c          256 g          298 t
ORIGIN      
        1 ttggcatctg gaccctcttt ataaactagg tctacttcta agtcctgacc ctgcacccat
       61 gtgggcgtaa tcgtaactgc catatccaaa tattaccatt tagtggatta caaagccaac
      121 ttactcgctg taaaactcgg ctagttcgtc tgggaatgct tgtcggaagc ccgtttcgtg
      181 cgatagtacg aattgtgctg tcttggcgtc cattactgca tatgggtgag cagttgtgaa
      241 cttgtacgta gcacggcggt tgctcaaatt ggcaacctca aaatatgggt tatcacgagt
      301 catcttgata aggtattcgt tctgtaccgc gaattgcgct tcacgcggag cggtaaccgg
      361 tcctgtttct accactggtt cctcctgttc gtcttcttcg actaccggta gttcttcttc
      421 ttgataatcc tccggtagag gaaccttgaa tgcctttgcg tattggacgt aagtaacgcc
      481 ctcttctgca aaattggcga cctgctcggt tatggtttct gcttggtcaa caccgaagta
      541 atctgcgatg gtgtgcagtt cgtctagatt caatgaatcg aaaccaacag gcttgtactg
      601 catttcggct gaggtaactg tacccgctgc cttggtcttg ttagccattt aaaactcctt
      661 aaggtttggc attagtgtag catatttcaa attcgtgtgc aaatggtaaa gcccccaccg
      721 ggtctcggtg ggggcggtac ctatttaatt atcaggccga cagcggtacg ttcttgataa
      781 gaacagcggc atttgggttc tcaattgctg cacccacacg ggtgaacatt gtgtactcaa
      841 tggtgtcctt acgtggaacg aactggcggt aaaccttgat ttcgcgcttg acgccccaaa
      901 tcaagttgtt tgggtctaca agccatacgt cggacgcggt gccctcggca cctggaccgt
      961 cgtactcagg gaatagcgga acctcttggg cacgaattcc gaatggagcg gttgggctcc
     1021 aaccagcgtt aaat
//
LOCUS       DATCGC010000491         1077 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_240613, whole genome shotgun sequence.
ACCESSION   DATCGC010000491 DATCGC010000000
VERSION     DATCGC010000491.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1077)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1077)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1077
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_240613"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            125..>1077
                     /locus_tag="VIJ87_04675"
     CDS             125..>1077
                     /locus_tag="VIJ87_04675"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5443761.1"
                     /translation="MNTLIKDVRYGLRILLRKPGFTLIAVLSLALGIGANTAIFSLLD
                     AVMLKSLPVRDPGSLVLFGNGESGGLSDGFPDESTDLFTYSFYREAQQRKDVFSDVGA
                     LLSLEWTVHGKVNSNGSTGEIEKIKAQLVSGTYFSTLGVNASIGRTLTDADDQNTGGH
                     PVAVVSNAYWQRQLGGDTTVLNKTITIDEVTYSIIGVTPRDFFGTKVGQAPDVWIPLA
                     MEKKLPPAYWDNRTDKAAQSLYLIGRLKDGVSREQANAVVNLIFKQSLHERAGAQPAA
                     DVLQKIQNASVELTSIGKGLSELRTQFSLSLKVLMAVVGLVL"
BASE COUNT          263 a          261 c          293 g          260 t
ORIGIN      
        1 agtgctggta gcgctggtcg cttgttactt gccggccaga cgcgcgacga aagtgaaccc
       61 gttagaagcg ctgcgatacg aatgaagatt tacggttcgg aaccacaaag caataggaaa
      121 aatcatgaac acactcatca aagacgttcg ctacggacta cgaatcctgc tgcgtaaacc
      181 tggtttcacc ctgatcgcgg tgctatctct cgcgctcggc attggtgcga acactgccat
      241 cttcagtttg ctcgacgccg tcatgttgaa gtctctgccg gtgcgggacc ctggcagcct
      301 tgtgttattc ggcaacggcg aaagcggtgg tctatcagac ggctttcccg acgagagcac
      361 ggaccttttt acgtactcct tttatcgcga agcccaacaa cgcaaggatg tattcagtga
      421 cgttggtgcg ctattgagtc ttgagtggac tgtgcatggc aaggtgaact cgaatgggtc
      481 cactggcgag atcgaaaaga tcaaagcgca gttagtctcc ggaacctatt tcagcaccct
      541 gggtgtcaac gcgagtattg gtcgcactct taccgatgct gacgatcaaa acacgggagg
      601 tcatccggta gcggtggtta gtaacgctta ctggcaacgt cagctaggcg gcgacacgac
      661 tgtcctgaac aaaacgatca caatcgatga agttacgtat tcaatcatcg gcgtaacgcc
      721 gcgcgatttc tttggtacca aggttggtca ggccccggac gtgtggattc cgttagcaat
      781 ggaaaagaag ctaccgcctg cttactggga caataggact gacaaagcgg ctcagtctct
      841 ttacctcatc ggacgtttga aggatggcgt ttcaagggaa caggcgaatg cggtagtcaa
      901 cttgattttc aaacagtcgc ttcatgaaag agctggcgca caaccggcag ctgatgtttt
      961 gcaaaagatc caaaacgcca gtgttgagct gacatcaatc gggaaaggat tgtctgagct
     1021 tcgcacacag ttttcattgt cgctgaaagt attgatggct gttgttggtc ttgttct
//
LOCUS       DATCGC010000492         1474 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_406374, whole genome shotgun sequence.
ACCESSION   DATCGC010000492 DATCGC010000000
VERSION     DATCGC010000492.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1474)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1474)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1474
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_406374"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(83..1156)
                     /locus_tag="VIJ87_04680"
     CDS             complement(83..1156)
                     /locus_tag="VIJ87_04680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HEY5443762.1"
                     /translation="MRPLANIGGLGLLILLLVAIVTCTGKADHTNPAASPDASPGHGL
                     SLADASLPLRTLRDVPLTGGATRFDYQSFDPTTNRLYIAHLGDGTLTIFDATKETVVG
                     DVKDLQRVHGVIAVPELHRIYASATGPNELAVIDDSTLQIIARVPAGDYPDGIAYATK
                     AKKLYVSDLHGKTDTVIDANTNQRVTTITLGGGAGNTQYDSVSEHIFVTVHGRNELAE
                     IDPSNDQVIARYAIAGCREPHGLLIDSDNRFAFVACEENAKLAVFDLEAKKMTAIHSV
                     GADPDVLAFDKGLGRLYVSAESGIVTIFDERGRNLEKVGEGLFAANAHSVAVDSRTHR
                     VYFPLQNVGGKPVLRIALPSDKQ"
     gene            complement(1195..>1474)
                     /locus_tag="VIJ87_04685"
     CDS             complement(1195..>1474)
                     /locus_tag="VIJ87_04685"
                     /inference="COORDINATES: protein motif:HMM:NF014796.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Fe-Mn family superoxide dismutase"
                     /protein_id="HEY5443763.1"
                     /translation="ETEFKKTANALGGGSGWTILSYNLHTGEVHNYWAWDHMHNAPMG
                     YPLLVLDMYEHAYHMDYGAAAAKYVDAFMQNVNWDEVNRRVETMRIPK"
BASE COUNT          357 a          394 c          361 g          362 t
ORIGIN      
        1 tggatatcag aaacttgatc ccggctacag atttctcgtg tagcgacaat cacgcaactc
       61 ggtttggaaa tttcaatcgt tcttattgct tgtctgacgg taatgcaatt ctaagaacag
      121 gttttccgcc cacattctgc aatgggaaat agactcgatg agtacggctg tcaacggcga
      181 cgctgtgagc attagcagcg aagagtcctt caccaacttt ctccaggttg cgaccacgtt
      241 catcgaagat cgttacgatt ccgctttccg ctgacacata cagacgacca aggcccttat
      301 caaatgcgag tacgtcggga tcagcaccca cagaatgaat cgccgtcatt ttctttgctt
      361 caaggtcaaa gaccgccagc ttcgcattct cttcgcacgc gacgaatgca aatcggttgt
      421 cgctgtcgat caatagtcca tgtggttcgc ggcagcccgc aatcgcatag cgcgcgatca
      481 cctggtcatt cgagggatca atttccgcga gctcgtttcg cccatgcacc gtgacaaaga
      541 tgtgttctga aactgaatca tactgcgtat tgcccgcgcc gccgccaagt gtgattgtcg
      601 tcactctttg attcgtgttg gcatcgatca ctgtgtctgt cttgccgtgc aagtcggata
      661 cataaagctt ctttgcctta gtagcatagg caatgccatc gggataatct ccggcaggaa
      721 ctcgcgcgat gatttgcagg gtgctgtcgt caatcaccgc caattcgttt ggaccagttg
      781 ctgaagcgta gatccggtga agttcaggaa ctgcgatgac accgtgaaca cgctgcaggt
      841 ccttaacatc gccaactaca gtctccttgg tcgcgtcgaa gatagtgaga gttccatccc
      901 cgagatgcgc aatatagagt cgattggtgg ttggatcgaa gctctgataa tcgaagcgtg
      961 tagcaccgcc ggtcaatgga acgtcgcgca aagtacgaag aggaagactg gcatctgcca
     1021 atgacagacc atgtcccggc gacgcatcag gagaagcagc cggatttgtg tggtcggcct
     1081 ttccggtgca agtgacaata gctaccagca gcagaatcaa caggcctaaa ccaccaatgt
     1141 ttgccagcgg tctcataaat aacctcatca aaagacgaga cgaacttccg ctcatcactt
     1201 ggggatgcgc atcgtttcaa ctcgtcgatt aacttcgtcc caattcacat tttgcatgaa
     1261 agcgtccacg tatttcgccg ccgccgcacc gtagtccata tgataggcat gctcgtacat
     1321 atcaagaacc aggagcggat aacccatcgg tgcgttatgc atgtggtccc aggcccagta
     1381 attatgaact tcgccggtgt gcaggttgta cgaaagaatt gtccaccctg aaccgcctcc
     1441 aagcgcgtta gccgtcttct tgaattctgt ttcc
//
LOCUS       DATCGC010000493         1560 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_10327, whole genome shotgun sequence.
ACCESSION   DATCGC010000493 DATCGC010000000
VERSION     DATCGC010000493.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1560)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1560)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1560
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10327"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(190..642)
                     /locus_tag="VIJ87_04690"
     CDS             complement(190..642)
                     /locus_tag="VIJ87_04690"
                     /inference="COORDINATES: protein motif:HMM:NF026066.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HEY5443764.1"
                     /translation="MNNEAIARKFHRLAALMEIRGDDPFRLRSYRNAAEAIEVWPTPL
                     KEIAKAEGIAGLQTIPGVGKAIAGKVIELIERGTFDAWERLVAETPETILDLIELPGI
                     GPKTAALLHKKYNVSSRDELKRFVAEGGLEIVDGIGPKTAERIKEALA"
     gene            759..1508
                     /locus_tag="VIJ87_04695"
     CDS             759..1508
                     /locus_tag="VIJ87_04695"
                     /inference="COORDINATES: protein motif:HMM:NF013936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEY5443765.1"
                     /translation="MNHLRRQLITGISIGAGALLVGCRNNGPASSATNKENKTDEQSS
                     DEAAAEISASEDLMREHGILRRALFVYQEAAIKLKQDAASVPADALEKTAQLFRAFGE
                     DYHEKKLEETYIFPALKKTQNAASVYADVLLAQHARGREITDYILATTKADKIPEASV
                     GPFITALETLVRMYDHHATVEDTIVFPAWKEVVGSKEMDEIGAKFEEIEEQFFGDDGF
                     EAASKRMAEIEESLGLANLGMFTAPPPPAHQ"
BASE COUNT          380 a          391 c          390 g          399 t
ORIGIN      
        1 attcacttac ttaagcgatg gatgccccag accaaaggag ccgtctaatt aagtgctgcc
       61 tcttcgtgtt gtttagtgtg atttcgtgga tcgtttccgc cgccgcaaga agaacgatcc
      121 acgaagtcac acgaacagac acgaacgaaa tctttactta ttcagagctt actgaagtct
      181 gtgcaactct taggcgagcg cttccttaat tcgttcggca gtctttggtc cgattccatc
      241 cacgatttcc aagccacctt ccgcaacaaa tctcttcaac tcgtcgcgcg acgacacgtt
      301 gtatttctta tgcagcagtg ccgctgtctt gggtccaata ccgggtaact cgatcagatc
      361 aagaatcgtt tccggcgttt cggctaccaa tcgttcccag gcgtcaaatg ttcctcgttc
      421 aattagttca atcaccttgc cggcgattgc tttgccgaca cctgggatcg tttgtaagcc
      481 agcaatgcct tctgcctttg cgatctcttt tagcggtgtg ggccaaactt cgatggcctc
      541 tgcggcattg cgataggatc gtagtctgaa tggatcatcg ccccggatct ccatcagtgc
      601 ggccaggcga tgaaatttgc gagcaatcgc ttcgttattc atgttcgttt gaatgaagtt
      661 gaatttgtgc ttagtctaac ttcgcattgc gagtaatatc aaagccattc ggaaagagtt
      721 gttgagcccg tttcggcttc gttgaaggag gagcttttgt gaaccattta cgtaggcagt
      781 tgataaccgg aatctcgatc ggtgccggcg ctttgcttgt cggttgtcgg aataacggtc
      841 cggcgagtag cgctacaaac aaggaaaaca agactgacga acaatcttcc gacgaagccg
      901 ccgctgaaat ttcggcgtca gaagatctca tgcgcgaaca cgggatctta cgtagagcgt
      961 tgttcgtcta tcaggaagcg gctatcaagc tgaaacagga tgcggcctct gttcctgctg
     1021 acgcgcttga aaagaccgcg caactctttc gcgcgttcgg cgaggactac cacgaaaaga
     1081 aactagagga aacctacata tttccggcct tgaagaaaac acagaatgcc gcatctgtct
     1141 acgctgatgt attgctggct caacatgcgc gcggacgaga gatcacagac tatattctcg
     1201 cgacgactaa ggccgataag attcctgaag ccagcgtggg cccgttcatt accgcgctcg
     1261 agacccttgt tcgaatgtat gatcatcacg ctacagttga agacacgatt gtgtttccgg
     1321 cttggaaaga agtcgtgggt tcaaaggaaa tggatgagat tggcgccaag ttcgaggaga
     1381 ttgaagaaca gttctttggc gacgacggat tcgaagctgc gtcaaaacga atggctgaga
     1441 tcgaagaaag tcttggcctg gcaaacctcg gaatgtttac agccccgccg cccccggcac
     1501 atcaatgaca tgacgaacat gaaaaaattc tcacttgcct tcacgtgctt gtttctttgc
//
LOCUS       DATCGC010000494         2097 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_107025, whole genome shotgun sequence.
ACCESSION   DATCGC010000494 DATCGC010000000
VERSION     DATCGC010000494.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2097
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107025"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(98..>2097)
                     /locus_tag="VIJ87_04700"
     CDS             complement(98..>2097)
                     /locus_tag="VIJ87_04700"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY5443766.1"
                     /translation="HTIGIAQMLMGALLIHVTGGRIETHFHVFGSLAFLSFYRDWRVL
                     VPATIVVAADHFLRGVFWPQSVYGVITASEWRWLEHTGWVLFEDTFLLIAIKRSVVEM
                     WGIADRTAEVESLNQGLEDRVEQRTHQLAAANQNLQTEVLDRKAAESELAKQRSFLRQ
                     VIDLNPNFIFAKDRDGRFTLVNQALADAFGTSVADLLGKTDNDLTPQTEEIDHFRNDD
                     LEVFNTLREKFIPEETITNQQGEVLWLQTVKRPILSDDGTATQILGIATDITARKKTE
                     EALSRSEEQLRQAQKMEAVGKLAGGVAHDFNNLLTAIIGHSEMCLRRLTREDGLYSHV
                     EQIQKAGDRAAGLTRQLLAFSRKQILQPKVIDLNSIVGDLSLMLQRLIGEDIDLMMRL
                     APNVGKVKADPNQVEQVLMNLAVNARDAMPNGGKLTIETSNVYLSDEFAGDHVTVASG
                     HYVMLAVSDSGVGMDAATKARIFEPFFTTKEVGKGTGLGLSTVYGIVKQSGGSIWVYS
                     ELGSGTTFKIYLPLVADQVEQVETRRQSILKGEGTILLVEDEDVVREMVAETLKDCGY
                     MVLIAGDGPAALDLSAGFSGEIKLMLTDVVMPQMSGRQLTEKLSPKRPSMKVLYMSGY
                     TDDAIVRHGVLEEGTAFIGKPFSPDALVLKIGELLGAIQMA"
BASE COUNT          508 a          594 c          479 g          516 t
ORIGIN      
        1 cttgaatagc caacctgtcc actgacaaag acgcgttcgg actattgcga aagcgaaagc
       61 atctcaaacg cgggcccgac attactaata ggtttgatta agccatctgg atcgcgccga
      121 gaagctcacc aatcttcaga accagcgcat cgggtgaaaa tggcttacca ataaaagccg
      181 taccttcttc caacacgccg tgacggacta ttgcatcgtc ggtgtatccc gacatgtaaa
      241 gcaccttcat gcttggccgc tttggactaa gcttctcggt caactggcgt ccgctcatct
      301 ggggcattac cacatcggtc agcatcagtt tgatctctcc cgaaaacccg gcgcttagat
      361 ccaacgcagc cggaccatcg ccagcaatca agaccatgta gccacaatcc tttagtgtct
      421 ccgctaccat ttctcttacg acgtcttcat cctcgactag aagaatcgtt ccttctccct
      481 tgaggatcga ttgccgtctc gtttccacct gctcaacttg gtccgccact aaaggcaagt
      541 agattttgaa agtggtacca ctaccgagtt cactatagac ccagatactg ccaccgcttt
      601 gcttgacgat tccgtaaaca gtcgacaatc ccaggccggt ccctttacct acctctttag
      661 tcgtaaagaa tggttcaaag atgcgcgcct ttgtagcggc gtccatcccc acaccactat
      721 cactaacagc taacattacg taatgacccg aagccacagt cacgtgatca ccagcaaact
      781 cgtcactgag atagacgttg ctcgtctcga ttgtgagttt gccgccattg ggcattgcat
      841 cacgcgcatt gaccgcgaga ttcatcaaga cctgctccac ttgatttggg tcggccttga
      901 ctttccccac gttgggggcc aaacgcatca tgaggtcgat gtcttctcca atgagccgct
      961 gtaacatcag gctcaggtcg ccaacaatgc tattcagatc aatgaccttg ggctgcagta
     1021 tctgcttccg gctaaatgcc aggagttgcc gggtcaaacc cgcggcccga tcacccgcct
     1081 tctggatctg ctccacatgg gaataaagac catcttcacg tgtcagacga cgcaaacaca
     1141 tttcactgtg gccaatgatt gctgtgagta aattgttgaa gtcgtgcgct acaccaccag
     1201 caagcttacc gacagcttcc atcttttgcg cctgccgcag ctgttcctcg ctacgagaca
     1261 aggcctcttc ggtcttcttc cgagcggtga tatccgttgc aattccaagt atctgagtgg
     1321 cggtaccatc gtcggacaga atcggccgct ttacggtttg gagccagaga acctcgcctt
     1381 gttggttcgt gatggtttcc tcgggtatga atttctcacg cagggtattg aacacctcta
     1441 gatcatcgtt gcggaaatgg tcaatctcct cggtttgcgg ggtaaggtcg ttgtcagttt
     1501 tcccgagtag gtctgctacg gatgtaccaa atgcgtcagc caatgcttga ttgacgagag
     1561 taaacctgcc gtcacgatcc ttagcaaaaa tgaagttagg atttaggtcg atcacttgac
     1621 gcaggaacga ccgctgtttc gctaactctg attccgctgc cttgcgatcc aatacttcag
     1681 tttgaagatt ttgatttgcc gcagctagtt gatgagtacg ttgttcgact cggtcctcta
     1741 acccttgatt aagactctcg acctcagctg tccgatctgc aatgccccac atctctacga
     1801 cgctgcgctt aatcgcaatc agcagaaaag tgtcctcaaa caaaacccaa cccgtgtgtt
     1861 ccagccagcg ccattcgctc gcggtgatca cgccatagac tgactgcggc cagaaaacac
     1921 cgcgcagaaa atggtcagct gcaactacga tggtcgcagg tacaagaaca cgccaatcgc
     1981 gatagaaaga tagaaaagcg agtgacccaa atacgtggaa gtgggtttca attcgtccgc
     2041 ctgtgacatg gattaacaaa gcgcccatta acatctgtgc aataccgata gtgtggc
//
LOCUS       DATCGC010000495         1958 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_107041, whole genome shotgun sequence.
ACCESSION   DATCGC010000495 DATCGC010000000
VERSION     DATCGC010000495.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1958)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1958)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1958
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107041"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            419..865
                     /locus_tag="VIJ87_04705"
     CDS             419..865
                     /locus_tag="VIJ87_04705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443767.1"
                     /translation="MKKEIVWMPLILIAMFASASVSTRAQTAYGVRADVPFDFIVGDK
                     TIPAGHITAQGVTSDMAGTLSIRNRDQGDLALRTGSRVPGTDDSDQCKLVFHKYGNHY
                     YLAQVWIPGRQAWEVMKSKEERSLEREMRSVKNFKPAPVILAARME"
     gene            complement(1053..1598)
                     /locus_tag="VIJ87_04710"
     CDS             complement(1053..1598)
                     /locus_tag="VIJ87_04710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443768.1"
                     /translation="MKNRRRRIIGVLIAAGAITTICGIVSIRRADAVIAIIRPAVIFT
                     VNPGQTARIHVIPSPDYNWSTGRSQRMLLGFDVYRISENPRSVASAVNTSCVKYHMVE
                     RQACEVTISPGEAASFDFAVPADGVATQISPLFSFEANDSDRGQLTNDFVPTIEMREG
                     GRTTEVVLLPAVQKVRDEGDR"
     gene            1827..>1958
                     /locus_tag="VIJ87_04715"
     CDS             1827..>1958
                     /locus_tag="VIJ87_04715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012173261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS6 family transposase"
                     /protein_id="HEY5443769.1"
                     /translation="MHPIPFYHRHRFPAEIISHCVRLYFRFTLSFRDVEEILTMRGVV
                     "
BASE COUNT          466 a          510 c          475 g          507 t
ORIGIN      
        1 atgctcttaa gaccaaggca ggcgacacga tcaaagtaag cgtggaccgc cactaacctt
       61 tcataacttg taaaagaact tcttacgtct tcgccgttta tctatccaat cagatagtct
      121 gacgccattc tagtgtctca agtagtcgac tctttcttct ccacagtttt aactcatagg
      181 gatgtaactg cgttcttcta ttcatatttg aagtaggtac agaacttcta tccgctcgca
      241 gttactttcc tgactcgtgg cacatcaata gcagtgaatg aggtaggctt caaacaaggt
      301 gttaaaagac accgagccca gatgttggaa caagtcggac actgccacgt caactcccaa
      361 tgaagccggg tggcgttcga ctccgctccg ttgcctcaaa agtagaaagg taggaagtat
      421 gaaaaaggaa atagtatgga tgccgctaat cctcatcgcg atgtttgctt cggcttccgt
      481 gtccactcgc gctcagactg catatggtgt ccgcgctgac gttccattcg atttcatcgt
      541 tggagacaag accattccgg ccggtcacat cactgctcag ggagtgactt cggacatggc
      601 aggtacttta tcaattagga accgcgatca gggcgacctt gctctgcgca ctgggagtag
      661 agtgccaggc actgatgact cagatcagtg caaactggtc tttcacaaat acgggaatca
      721 ctactatctc gcgcaggtct ggataccggg ccgccaggcg tgggaagtta tgaagtcaaa
      781 ggaagaacga tcacttgagc gggaaatgcg ttcagtgaag aacttcaagc ctgcgcccgt
      841 gatcctggct gccaggatgg agtagacaca acaactccga aacgcactgt tgcgaatgcc
      901 ttggaaaggc cttggccaat tcagggcatt cgcatttcgc gaagtactcc tttgatagag
      961 ttccgattct ggatcatgta caccggaatt ctcgctttag aacgccaaca ttctagattt
     1021 gtttttctcg tccgcatcca caaatgctca atctaccgat caccttcatc acgcactttt
     1081 tgaactgccg gcagcaatac aacctcagtg gtcctgccac cttcgcgcat ctcaattgtg
     1141 ggcacaaaat cgttagtcag ctgtccgcga tcagagtcat tggcttcgaa cgaaaacaac
     1201 ggactgatct gagttgctac tccatcagct gggactgcaa agtcaaaaga ggccgcttct
     1261 cccgggctaa tcgtcacttc gcatgcctgt ctttccacca tatggtactt aacacagctt
     1321 gtattcaccg cgctggccac tgaacgagga ttctcactga tcctgtaaac atcaaaacct
     1381 aacaacatcc gttggctcct gccggtgctc caattatagt ccggggaagg aatgacgtgg
     1441 atgcgggccg tctgacccgg gttcaccgtg aagatgactg ctggtctgat gattgcaatc
     1501 actgcgtcag ctcgccttat agagacgatg ccgcatattg tagtgatggc ccctgcggcg
     1561 atcagcacgc cgataattct cctcctcctg tttttcatgg tttctccttg cgcatcgatc
     1621 gagatggatt gagttaaagg ctgaactgga gatgcgcgtc ggggtgggtg caggtcttgt
     1681 tgcagccctc gtaaacggct tttgtttaaa gtgggcggag tatatgctcg tgctgcaaag
     1741 ccgtcaacga cttgcctggc taggtaggta ttgtcaggtt aacagcatag agagtaatgc
     1801 gactgtgctt gcggcttact tcacccatgc accccatccc tttctaccat cgtcatcgct
     1861 tccctgccga aatcattagt cattgtgtcc ggttatactt tcgcttcact ctgagctttc
     1921 gcgacgtcga ggaaatctta acgatgcgtg gcgtggtc
//
LOCUS       DATCGC010000496         2043 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_206830, whole genome shotgun sequence.
ACCESSION   DATCGC010000496 DATCGC010000000
VERSION     DATCGC010000496.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_206830"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..355)
                     /gene="atpH"
                     /locus_tag="VIJ87_04720"
     CDS             complement(<1..355)
                     /gene="atpH"
                     /locus_tag="VIJ87_04720"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F1 subunit delta"
                     /protein_id="HEY5443770.1"
                     /translation="MSLQTIARRYATALAEVAIERREEVEVQQEIDAWASLVESSQLL
                     RDVFSNPTIPYDQKRKVLEELISRTRVRETTASFLRVLLKNQRIAQLKQVAERFGQVL
                     DQHNGVVAANVTTAQI"
     gene            complement(352..873)
                     /locus_tag="VIJ87_04725"
     CDS             complement(352..873)
                     /locus_tag="VIJ87_04725"
                     /inference="COORDINATES: protein motif:HMM:NF012645.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F0 subunit B"
                     /protein_id="HEY5443771.1"
                     /translation="MLLIYLPEWIDYLNYPGLELWKFLNLGIFLTAAIIILRKPIRNA
                     LIARGEGIKLELQKAKAERDQASAKLAEAEALLTQVKTDVQTVRDQASQEAEAERQRQ
                     VSAAEQEMERLRTQAARELELARKATHKGLQQFLANRSLEIAKQSVINELRPEDDLRL
                     IRERIGELRRARG"
     gene            complement(904..1350)
                     /locus_tag="VIJ87_04730"
     CDS             complement(904..1350)
                     /locus_tag="VIJ87_04730"
                     /inference="COORDINATES: protein motif:HMM:NF012645.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443772.1"
                     /translation="MFLAETSIQLVPDGTLLLHLLMVAVMVAVLNLTLLKPINKILED
                     RDKYILGKVDEAKTILQTSEQKIDEYHEALHEARTEGYQLIEKVRTQAVKEKDERVRT
                     FREQTSREITAGIDATHLQEQMVKKELESQAEALGSMITAQILERR"
     gene            complement(1553..>2043)
                     /locus_tag="VIJ87_04735"
     CDS             complement(1553..>2043)
                     /locus_tag="VIJ87_04735"
                     /inference="COORDINATES: protein motif:HMM:NF036800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443773.1"
                     /translation="AYQKLIERVGLTQEALANKFGRDRSYITNYLRLLRLPDDIQRLV
                     EEGRLSTGHARTVLGLPHPDQQRRIARQVIDKGLSVRATEALVKKSLSGGPERQKRSA
                     TAAIDPNVRAAEAKLRRALGTQVRIMQGVDNGPGRIEIAFFNNQDLDRVYSVIMKSLT
                     DM"
BASE COUNT          434 a          519 c          502 g          588 t
ORIGIN      
        1 cgatctgtgc agtcgtcacg tttgcggcca ccacgccgtt atgctggtcc aatacttgtc
       61 cgaatcgctc ggcaacttgt ttaagctggg caattctctg gttttttagc agcactcgca
      121 ggaatgaggc ggtggtctcg cgaacacgtg ttcgtgaaat taattcttcc agaactttgc
      181 gtttttgatc gtacggaatg gttgggttgg agaatacatc gcgcaacaat tggctgcttt
      241 caactaaaga ggcccaggca tcaatctctt gctgaacctc aacttcttcg cgtcgctcga
      301 ttgccacttc ggcaagagcg gtcgcatagc gtcgtgcgat tgtttgaaga ctcaacctct
      361 agccctcctg agttcgccga tgcgttccct gatcaacctg aggtcgtctt ccggacgcag
      421 ttcattgata actgattgct tcgcgatctc gagacttctg tttgcgagaa attgctgtag
      481 tcctttgtga gttgcctttc gggccaactc taattccctt gctgcttgag ttcttagtct
      541 ctccatttct tgctccgcgg cagaaacttg tcgctgacgt tcagcttctg cttcttgcga
      601 ggcctgatca cggacagttt gaacgtcggt cttgacctga gtcagaagtg cttccgcttc
      661 agcaagcttt gcactcgcct ggtctcgctc cgccttggct ttctggagtt ctagtttgat
      721 tccttcaccc cgagcgatca aagcgttacg aattggctta cgaagaataa tgatggcggc
      781 cgttaggaaa atccccaagt ttagaaattt ccagagttcg aggcctgggt agtttaagta
      841 gtcgatccat tctgggagat atatcagtag cattggaaaa tgaactcttg attcaactcc
      901 ggtctatctt cgctcaagta tctgagctgt aatcattgag cccagcgctt cagcttgact
      961 ctctaactcc ttcttgacca tttgttcctg tagatgagtt gcgtcgattc cggcggtgat
     1021 ctctcgactt gtttgctccc taaatgtgcg aaccctctcg tccttctctt ttacagcttg
     1081 tgttcgtact ttttcgataa gctggtaacc ctcggtgcgg gcctcatgga gagcttcgtg
     1141 atattcatcg atcttctgtt cacttgtctg gagtattgtc ttagcttcgt caaccttccc
     1201 gaggatgtat ttatctcgat cctcgagaat cttattgatg ggctttagaa gggtcaggtt
     1261 cagaaccgcg accatcacag ccaccataag caggtgaagc agtaaggtcc cgtccggaac
     1321 tagctggata gaagtctccg ccaaaaacat tcagaatccc tctagagagt aaactttagg
     1381 tgccgaaaag cgcgcgagtc taacatggcc gttttggacg gtcaaccaaa gcactaaaag
     1441 atgacaaacc cagtctttcg tggcttgttg gggcaaacca ggctaaccga aattggttga
     1501 gtgctacatt ctaaaagccg ctgctgtact ggcgagaaat cgatgtcaca atctacatgt
     1561 cagtcagtga cttcataata accgagtaga cgcgatcgag atcttggttg ttaaagaacg
     1621 ctatttcaat tcttccggga ccattgtcga cgccttgcat gattcgtact tgcgttccca
     1681 gggcgcgtct gagttttgct tcggcggctc ggacgtttgg atcaatggcg gctgtcgctg
     1741 atcgcttttg gcgttctggt ccaccactta aagatttctt gaccaatgcc tccgtggctc
     1801 ggaccgataa acctttgtcg ataacctgcc tggcgatacg gcgctgctga tctggatgcg
     1861 ggagacccaa aactgttcga gcatgcccgg tcgacagtcg accttcctca accagtcgtt
     1921 ggatatcatc agggagacga agcagccgta ggtagttggt aatgtaggag cggtcccttc
     1981 cgaacttgtt agccagggcc tcctgggtga gcccaaccct ctcgattaac ttttggtaag
     2041 cct
//
LOCUS       DATCGC010000497         1093 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_308543, whole genome shotgun sequence.
ACCESSION   DATCGC010000497 DATCGC010000000
VERSION     DATCGC010000497.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1093)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1093)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1093
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_308543"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..638
                     /locus_tag="VIJ87_04740"
     CDS             <1..638
                     /locus_tag="VIJ87_04740"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HEY5443774.1"
                     /translation="PTSLGDEWEMEGQGMIRTLSPYLEQGRIRIFCINSVNSDSFQNK
                     GAHPFHRSWMQAQYDAYVANEVFPFIDSQCQTPGIGIATLGASLGAYHAANTLFKHPD
                     HVKRCYALSGIYDMRDSMDGMYDDNFYFNNPVDYMANQSDPWYFHHYASCDIRLVTGC
                     GPWENSGPTYRMSEILKNRGVAHHLDDWGPQGGHEWPYWHHQMWEYVSTHY"
BASE COUNT          270 a          302 c          268 g          253 t
ORIGIN      
        1 ttccgacgag cctcggcgac gaatgggaga tggaaggtca aggcatgatt cgcaccctca
       61 gtccctacct cgagcagggg cgaatccgaa tcttttgcat caacagcgtg aatagcgatt
      121 cattccaaaa caaaggagcc catcccttcc atcgaagttg gatgcaggca cagtacgatg
      181 cctatgtggc gaacgaagtt ttccctttca ttgactccca atgccagacg ccaggcatcg
      241 ggattgccac gctgggagca tcgctcggcg cctatcacgc ggccaacact ctcttcaaac
      301 atcccgacca cgtgaagcgc tgctatgcgc tatcgggcat ttacgacatg cgtgactcta
      361 tggacggcat gtatgacgac aatttctatt tcaacaaccc tgtcgactat atggcgaacc
      421 aaagtgaccc ttggtatttt caccactacg cgagttgcga tatccgactc gtaaccggct
      481 gtggtccatg ggagaacagc gggccgacct atcgaatgtc tgagatcctc aaaaatcgcg
      541 gcgtcgctca tcatctggat gattggggcc cgcagggcgg gcacgaatgg ccctactggc
      601 atcatcagat gtgggagtac gtcagcaccc actactaaaa gaattgtgca ataacgttga
      661 ggcagtcctt gggattcttc tcctcttttt cgcacctcgg tctactcgac ggctttatac
      721 cgtcaagttg gctgctgaac aattgattag ctgcctaacg aacagcgctc ttgcaacttg
      781 acggttttat accgtcgaga tgccaacggc gcgctgtctc tcattgtctg gtcaaccata
      841 ctcaataccg agcacacagc ggttacggcc gacagagtta gcagaattca caaccagcta
      901 atgagaacta gcagaaatcg gtttcgactt tccttgcaaa atgctgatca ccataggtcg
      961 aacgcgatcg taaccagggc gttcctcgaa aaaggcctag gtctcatgaa cgcggccttt
     1021 atacagatcg aggtgataca ttcgtgagtc ctttggaatc tcaccaagct cacggactac
     1081 gtccgtcgtg aag
//
LOCUS       DATCGC010000498         1046 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_10459, whole genome shotgun sequence.
ACCESSION   DATCGC010000498 DATCGC010000000
VERSION     DATCGC010000498.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1046
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10459"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..516
                     /locus_tag="VIJ87_04745"
     CDS             <1..516
                     /locus_tag="VIJ87_04745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443775.1"
                     /translation="RRQNFAWQRQRSLEQQRRLAQLRFQQRYIERLQRDQLRLQQWQY
                     NNYNNNYYNNYRYQRGSSYYETNQYGAEMLQRAINDGYGEGFQAGQADRQDGWGFNPE
                     DAYGYQDASYGYDSYYVDLNEYQYYFREGFRRGYEDGYYSRSQYGQYSNGGYSILGAI
                     LQGILNLQSIN"
     gene            complement(607..>1046)
                     /locus_tag="VIJ87_04750"
     CDS             complement(607..>1046)
                     /locus_tag="VIJ87_04750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443776.1"
                     /translation="AYEQVLKMTNESNLSKEIKDNTALFHHYNLARVAIGEKNLDSAK
                     KEAAEFLKGSEAAKNSGQIKQAHELAGRIALLEKNYDQAIAELNQSNQQNPQDLYLLG
                     EAYQGKGDAAKAKDSFTKAAKFNSLPALNYAFVRTKAEKAIAS"
BASE COUNT          245 a          263 c          259 g          279 t
ORIGIN      
        1 cgacgtcaga acttcgcctg gcaacggcag cgttcgcttg aacagcagag acgtttagcg
       61 cagctccgtt ttcagcaacg ctacatcgaa cgtttgcagc gtgatcagtt acggctacaa
      121 cagtggcagt acaacaacta caacaacaac tattacaaca actatcgcta tcaacgtggc
      181 tcaagctatt acgagaccaa tcagtacgga gcagaaatgc ttcagcgtgc aatcaacgat
      241 ggttacggtg aaggatttca ggcaggtcag gctgatcgtc aggacgggtg gggcttcaat
      301 cccgaagacg cctatgggta tcaggacgcc agttatggct acgatagtta ctacgttgac
      361 ttgaacgagt atcagtacta cttccgcgaa ggctttcgac gtggctatga agacggctac
      421 tactcgcgtt cgcagtacgg acaatactca aatggcggtt acagcatcct cggtgcaatt
      481 ctccagggga tacttaatct gcagtcgatc aactaatttg acggggcggt actcagtggc
      541 cgccccgttt ctcaaaaacg agcaacagca ttaacgaagg gcggccatgg agtgccgccc
      601 gtacaactag gacgcaattg ccttctcggc ttttgtgcgg acgaacgcgt aattcaaggc
      661 gggaagcgaa ttgaacttcg cagcttttgt aaatgagtcc ttggcttttg ccgcatcacc
      721 ctttccttga taagcctcac ctagcaagta cagatcttgt gggttctgtt gattgctttg
      781 atttaactct gcgatcgcct ggtcatagtt cttttccaaa agtgcgattc ggccggctaa
      841 ttcatgtgcc tgcttaatct gcccggagtt ctttgctgct tcggaacctt tgagaaactc
      901 cgcagcctcc ttctttgcac tgtccagatt cttctcgccg attgctactc gcgccaggtt
      961 gtagtgatga aacagcgccg tgttgtcttt gatttctttt gacaggttgg attcgttagt
     1021 cattttaagc acttgctcgt aggctt
//
LOCUS       DATCGC010000499         1550 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_473570, whole genome shotgun sequence.
ACCESSION   DATCGC010000499 DATCGC010000000
VERSION     DATCGC010000499.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1550
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_473570"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1499)
                     /locus_tag="VIJ87_04755"
     CDS             complement(<1..1499)
                     /locus_tag="VIJ87_04755"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY5443777.1"
                     /translation="MSRAASRQKEIGLRLALGASRSRLIRQLLTESVLLSVIGGILGI
                     LFAIWIKDGLLAVNDWGGRGMRSLDTRLDLRVLGFTLALSLLTGIVFGIAPAWRSTRV
                     DLTPTLKDGGRGSSSVHRSLLSRGLVVLQVALSLLLLIGAGLFVRTLRNLQKVEPGFN
                     TQNLLLFGVQPSLIGYKDEKLTQLYSQLSERIEAISGVQAVTFSRQALLSQGASSSSV
                     YLRSALNAPPDSEGRIKSNGEGYRHSVRENFLEAMGIPLLFGRTFRPQDDAKASRVVI
                     VNQTFANKYFPGENVVGKRFTFDSSKPDELEIIGVAKDAKYTSQRDEIPPTVYSSYRQ
                     ERSMGNAVFEVRTAGDPNAVIGALRQAVKEVDPNLPLSNVKTQVEQGDETLRMERLFA
                     KLLTLFGLLAQQLASIGLFGVLAYAVSQRTHEIGIRMALGASRFNVLKMIVRQGMTLA
                     GIGVVLGLIGSYVLTKYLESWVNLSQMLFGVKVSDPATYTVIAVLLTLIS"
BASE COUNT          420 a          434 c          368 g          328 t
ORIGIN      
        1 gaaatcaatg tcagaagcac tgcaatcaca gtgtaggtcg ccgggtcaga aactttcaca
       61 ccgaacaaca tctgggacag gttgacccaa ctctcgagat atttcgtcag cacgtaagaa
      121 ccgattagtc cgagaacaac tcctatcccg gctagcgtca ttccctgccg gacaatcatc
      181 ttcagcacgt taaagcgact tgcgccaaga gccatgcgaa tcccgatttc gtgcgtgcgc
      241 tgcgaaaccg cgtaagccaa cactccgaaa agccctatgg aagcgagttg ttgcgcaagc
      301 agtccaaaca gtgttaacaa tttggcaaac agcctttcca ttcgcagcgt ctcatccccc
      361 tgctcaactt gagtcttgac attactcaga ggcaggttcg gatcaacttc cttaaccgct
      421 tgtcgcagcg caccaataac agcattggga tcgcctgcgg tgcgaacttc gaacacagca
      481 ttgcccatgg accgttcctg ccggtaggac gaataaacag tgggcggaat ctcgtcgcgt
      541 tggctcgtgt atttcgcatc cttcgcaacg ccgatgattt cgagttcatc cggttttgaa
      601 ctgtcgaacg tgaatctttt tccgacgacg ttttcgccgg gaaaatattt gttggcaaag
      661 gtctgattga ctattacgac ccttgacgct tttgcgtcgt cctgtggtct gaatgttcgg
      721 ccaaagagca aagggatccc catcgcttcc aggaagttct cccgcaccga atgtctgtac
      781 ccttcaccat ttgatttgat tcgaccttcc gaatcgggtg gagcgtttaa ggcactgcgg
      841 agatacacgc tgctcgaact cgcaccttgg gaaagcaacg cctgccgcga gaacgtgacg
      901 gcttgcacac cggagattgc ttcaatacgt tcactaagct gcgagtaaag ctgcgtcagt
      961 ttttcgtcct tatagccaat caaggacggc tggactccaa acagcaacag gttctgagtg
     1021 ttaaatccag gttcgacctt ctgcagattg cgtagagtgc gaacaaacaa accagcccca
     1081 atcaacaaca aaagagacaa cgcaacctgt agaacaacca gaccacgact aagcagcgat
     1141 cgatgaactg agctggaacc acgacctcca tcctttaagg ttggggtcaa gtcgacacgc
     1201 gtcgaacgcc aggccggggc aataccaaaa acgatgcccg ttaacaacga aagggcaagg
     1261 gtgaagccaa gcacacgcaa gtcgagtcga gtatcgagac tgcgcatgcc acgtccaccc
     1321 caatcgttga cagccaggag accgtcttta atccaaattg cgaacagaat cccgagaatg
     1381 ccaccgataa ccgaaagcaa aacactttca gttaacaatt gtctgatcag gcgactacga
     1441 cttgccccaa gcgcaagacg taaaccaatc tctttctggc gtgatgcagc gcgagacata
     1501 agaagattgg ccacgttcgc gcaagcgatc agtagcacca acccgacgac
//
LOCUS       DATCGC010000500         1187 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_473601, whole genome shotgun sequence.
ACCESSION   DATCGC010000500 DATCGC010000000
VERSION     DATCGC010000500.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1187
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_473601"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..901
                     /locus_tag="VIJ87_04760"
     CDS             <1..901
                     /locus_tag="VIJ87_04760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443778.1"
                     /translation="RPYDVAGWTLPLQLGVEAPAIMSIRETPTERKLTLLKNENEVRT
                     DLALPLRNSEASPIRNPIKASVRIGIYKGSIGNMDEGWTRYVFDTFNVPYSSIKDGDI
                     KQGNLASKFDVILLPSQRSREIIEGNAAGSLPAEYTGGIGEGGVSNLKDFVNSGGTLI
                     CFDGSCELAIKQFNLPIKNVLEGLRSSDFYCPGSIVSLELDNKNPIATTLPTNIPAYF
                     INSSAFATTDANVRVIARYAKDNVLRSGWLLGEDKLRGQIALAELSQGKGRIVLFAFR
                     PQHRGQTWGTLPLIWNAIASSVR"
BASE COUNT          302 a          311 c          289 g          285 t
ORIGIN      
        1 acggccctac gacgtagctg gatggacgct cccgctccaa ttaggtgtcg aagctccggc
       61 cataatgtcg atccgcgaaa caccgaccga gcgcaagttg acgttactca agaatgagaa
      121 cgaggtccga actgatcttg cattgccact tcggaattct gaagcgtccc cgatcaggaa
      181 cccgattaaa gcgtctgtgc gaataggaat ctacaaaggt tcaattggaa atatggacga
      241 aggctggacc cgctacgtct tcgatacctt taacgtgcct tactcgtcga taaaggacgg
      301 cgacatcaaa cagggaaacc tcgcctcaaa gttcgatgtc attcttctac cgtctcaacg
      361 aagtcgtgag atcatcgagg gcaacgcagc cggcagtctt ccagcggagt acacaggcgg
      421 gattggcgaa ggtggtgtct caaacctgaa agactttgtg aacagcggtg gcacgctgat
      481 ctgctttgac ggctcctgtg aacttgcaat caaacaattt aacttaccaa tcaagaacgt
      541 actcgaaggt ttgcgatcat ctgactttta ttgtcccggc tccatagttt cattagaact
      601 ggataacaaa aacccgattg caacgactct tcccacgaat attcccgcct acttcattaa
      661 cagttcggca tttgcaacta ccgatgccaa cgtgcgagta attgctcgtt acgcaaaaga
      721 caacgtactt cgatcgggat ggttgctggg tgaagacaag cttcgaggac aaatagcgct
      781 ggcagaatta tcgcaaggca agggacgaat cgtccttttt gcctttagac cacagcatcg
      841 cggacaaacc tggggaaccc taccactcat ttggaatgca attgcctcga gcgtgagatg
      901 aattgggcga ggattagctg tcacggcttg ctctgtgcct gttcatgggg ttatctttag
      961 cgtgctcgct cggttttctc tctcctgact gcctcaaaaa ccgcaagcat ctatttcact
     1021 acaactgcat ccaagcgagg tcggcgcgtt cgtctgactc gcgctgcaat ggagctaatt
     1081 atgaagaaat atgctgcttt gctagtgctc ctctccctaa gttcagcgtt aacaaatctg
     1141 acctttggcc aacgccccag gcgcgtggag ggacagtcca ccgttac
//
LOCUS       DATCGC010000501         1147 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_273360, whole genome shotgun sequence.
ACCESSION   DATCGC010000501 DATCGC010000000
VERSION     DATCGC010000501.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1147
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_273360"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..954
                     /locus_tag="VIJ87_04765"
     CDS             <1..954
                     /locus_tag="VIJ87_04765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443779.1"
                     /translation="KPQDVREWTAGAAYELNGGLTIGVRGVYRYQGWVIEDGSFDDGD
                     SYFLFNPGRRGNGETTEDKACTGTGGAPSAQCFGNARRYYRALEFTATKRFTNNWQLI
                     SSYVYSSLIGNYEGLFRNDNGQSDPNITSLFDLVSLLNGMYGRLPNDRPHQFKLDGSY
                     RTPWKLQLGASFRAQSGIPFNALIPHPVYGNNEGFCVGAPLNICHPRGTAIVPTVSVS
                     QPGFPNVVDSIGSNRTPTTINLDMNAFYPWKISENKEIRFSADWFNVFNSQRAIRLDE
                     TLQINSGIPGAAAIQFANPFFGAGTIFQFPSSLRLGVKFTF"
BASE COUNT          263 a          296 c          282 g          306 t
ORIGIN      
        1 aagccgcaag atgttcgtga gtggaccgct ggtgcagcgt atgaacttaa cggtggccta
       61 accattggcg ttagaggagt ctatcgctac cagggttggg ttattgaaga tggctcattc
      121 gacgacggtg acagctactt cttgttcaat cctggacgtc gtggtaacgg tgaaacaacc
      181 gaagacaagg cttgcacagg aactggcggc gcgccatcgg cacagtgttt cggtaacgcg
      241 cgacgttatt acagagcact tgagttcact gccaccaaac gctttaccaa caactggcag
      301 ttgatctctt cgtacgttta ctcgagtttg attggtaact acgaaggtct cttccgaaac
      361 gacaacggcc aatcagatcc gaacatcact tcgttgttcg atctggtcag cttgctgaac
      421 ggtatgtacg gccgattgcc aaacgatcgt ccgcaccagt tcaagctcga tggcagctat
      481 cgaaccccat ggaaacttca gttgggtgct tctttcaggg ctcaatctgg aattccgttt
      541 aatgcgctaa tcccgcaccc ggtctatggc aataatgagg gtttctgtgt aggtgcacct
      601 cttaatattt gccatccgcg cggcactgca attgtgccga cggtatcagt cagtcaaccg
      661 ggttttccga atgtggtcga tagtatcggt tcgaaccgaa caccaaccac catcaacctg
      721 gacatgaacg ctttctaccc atggaagata agcgagaaca aagagattcg tttctcggct
      781 gattggttca atgtcttcaa ttcacaacgt gccatccgtt tggatgagac actccaaatc
      841 aacagtggta tccccggagc ggccgcgatt cagttcgcca atcctttctt tggggcgggt
      901 acgatcttcc agttcccatc atcactgcgc ttgggcgtca aattcacgtt ctaaacaatt
      961 ggcttagcgt atccccacaa agggactcgc taaaggcttt gacgggagaa gcgctgtaac
     1021 ttggcgcttc tcctttttgt tttctgtgat agtctagtcg ccccgcatca tctctttcga
     1081 acagggttgt gagtcatctc gctgcgtcag gagtgacaca tgtatttctc tccagtgcat
     1141 ctctttt
//
LOCUS       DATCGC010000502         3583 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_10503, whole genome shotgun sequence.
ACCESSION   DATCGC010000502 DATCGC010000000
VERSION     DATCGC010000502.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3583)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3583)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3583
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10503"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..631
                     /locus_tag="VIJ87_04770"
     CDS             <1..631
                     /locus_tag="VIJ87_04770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443780.1"
                     /translation="SITAAPALDETSPKSSPPWVWIGFFFAAAFFVIEVLFVAMELDE
                     ASINLFLTLISIGGWIYWLVCVHRFHKILAELSNGRYPIAPGEAAGRHIIPFYNLVWI
                     FKWPAEMSDYINQRGRVKMVNGYLIGAVLLFALLTRFVDGAIGLAFLFAVTLYISAKL
                     KKHVAEVKGVDPNKLPPLPDPDMFRSRDTAAASNPAPVMNEPTPPTVEW"
     gene            complement(677..2608)
                     /locus_tag="VIJ87_04775"
     CDS             complement(677..2608)
                     /locus_tag="VIJ87_04775"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metalloprotease"
                     /protein_id="HEY5443781.1"
                     /translation="MKIRLPLVVLLLATLISTSFAQQPQERDLKKEAAIWEQLKLVAP
                     AELENFKLATIAMDTNKFDVAVKLYEGVMLKAPEFDPVIRRLGICLVLSGKIEEGLGL
                     LQYAVSKNRSPENLISLAQALAYPSEKQQGTKEQKQQAMLLVAEAMKSPAVGNDPSYP
                     VLLGQLALELDNLDHLREATTKLVAEHQDLMITHYLNAIVAATDERWLTAESEIHKAE
                     SLGLPHEEAQKFLDSGIASNARVWHYAYYALGLVSAWLVGLLVLFLVGKFMSRITLRS
                     IETEDPNQPTSKSQLALRLWYRRLINIAGLYYALSIPIVMFLVLAVAGSLTYGFLMIG
                     RIPIKLVLILCVGAVVTVYKMFRSLFLKLEKEDPGRALKLEEAPRLWDLTKNVANTVQ
                     TRAIDEIRITPGTEVAVYEKGTLRERSNDKAKRILILGVGALNGFELNSFRAVLAHEY
                     GHFTNRDTAGGDVAMRVNDHMLKFAKAMYISGQAVWWNVAFQFLRVYHFIFRRLSHGA
                     TRLQEVLADRVAALKYGAKAFEDGLTHVVRKGAEFQALATREINASAAAQRRLQNLYE
                     LTSDDNPDIRESAEMELNRETSEDDTHPSPTDRFRFTRRITTQTEPPISGMVWDLFAD
                     REALTTEMTAFVQGELGLY"
     gene            2849..3418
                     /locus_tag="VIJ87_04780"
     CDS             2849..3418
                     /locus_tag="VIJ87_04780"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY5443782.1"
                     /translation="MADQIINGRVIEACQRGDRDAFRVLFETYKDKVYSIAVYSIGGD
                     KSVAEDVTQQIFLKLFTAIQQFRGDSEFTTWLYRLVVNACMDERRKRRKLLPWGESFA
                     FTPTHKKPQEKQYARVEIAEAVQLAIGELKPKFRLPILLKYVEGLSYEEIASVMGCSK
                     GTVASRLNRGHGQLAKQLGHLREHAFQEE"
BASE COUNT          872 a          867 c          918 g          926 t
ORIGIN      
        1 ctcaataacc gctgcacccg cactggacga aacctcgcca aaaagctctc cgccgtgggt
       61 ctggataggc ttcttctttg ccgcagcatt ttttgtaatc gaggtcttgt ttgtggcgat
      121 ggaactcgac gaggcttcaa tcaatctatt tctcaccctg atctcgattg gcggctggat
      181 ttattggctg gtttgtgttc atcgatttca caagatcctg gcagagctct ctaatggtcg
      241 atatccaatt gcaccgggtg aagctgccgg gcgacacatt attccgttct ataacctcgt
      301 ttggattttc aagtggccgg cagaaatgtc ggattacata aatcaacggg gtcgagtcaa
      361 aatggttaac gggtacttga ttggcgccgt tctcctattc gcattgctga cgcgttttgt
      421 tgacggagcg atcggtctag cgtttctctt cgcagtcacc ttgtatatat cggccaaact
      481 caagaaacat gttgctgaag ttaaaggtgt ggatccgaat aagctgccgc cattaccgga
      541 tccagatatg ttccgcagcc gcgatactgc cgcggcgtcg aatcctgctc cagttatgaa
      601 tgagccaact ccgccgactg tcgaatggtg atttgaactg aacctccacg acgcgaagcg
      661 ttgctttacg gtttttctag tacagaccca gttcgccttg gacgaaggcc gtcatctctg
      721 tggtgagcgc ctcacgatcc gcaaaaagat cccaaaccat tccggatata ggcggctcag
      781 tttgtgttgt aattctgcga gtgaatcgaa aacggtctgt cggactcgga tgggtatcat
      841 cttcgcttgt ttcccggttg agctccattt ccgcactctc cctgatgtcc gggttgtcat
      901 cactagtcag ttcatagaga ttctgaagtc tcctctgcgc agcagcagac gcgttgatct
      961 cgcgggtggc aagcgcctgg aattcagcac cctttcgaac tacgtgagtt aatccgtcct
     1021 cgaaagcttt agctccatac ttcaaagcgg ccactctgtc agccaaaact tcctggagtc
     1081 gcgtagcgcc gtgactgagt cgcctgaaga taaagtggta tacccgaaga aactgaaacg
     1141 cgacgttcca ccagactgct tggccgctta tatacatcgc cttcgcaaac ttcaacatgt
     1201 gatcgtttac acgcatggca acgtcacctc cagcagtgtc acggtttgtg aagtgaccat
     1261 attcatgagc cagaacggca cggaacgaat tcaactcgaa accgttcaag gcaccgactc
     1321 caagaatcaa gatacgtttg gccttatcgt ttgaccgttc tcgcaatgtg cccttttcat
     1381 aaactgcgac ctctgtaccg ggcgtaattc taatttcatc aatcgccctg gtctgaacag
     1441 tgttggcaac attcttcgta agatcccaca gccttggagc ctcctccagt ttgagagctc
     1501 tacccggatc ttctttctcg agcttcagaa atagcgatcg gaacattttg tagacggtga
     1561 ctacagctcc gacacaaagg atcaaaacaa gcttgatggg aattcgtcca atcattagaa
     1621 acccataagt caaagatccg gcgactgcca acacgagaaa catgacgata ggaatagaca
     1681 acgcataata gagtccggcg atgttaatta gtcgcctgta ccagagtcgg agggcgagtt
     1741 gagatttgct cgtcggttga tttggatcct cagtttcaat cgaacgtagc gtgatgcgcg
     1801 acatgaattt gccgaccagg aagagaacga gcaggccgac cagccatgcg ctgactaagc
     1861 caagtgcgta gtaggcgtag tgccagactc gagcatttga ggcaattcca gagtcgagga
     1921 acttctgcgc ttcctcatgt ggtaaaccca gactttcggc tttatgaatc tccgactccg
     1981 ccgttaacca acgttcgtct gttgccgcga cgattgcatt gaggtagtga gtgatcatca
     2041 aatcttgatg ttcggcgacg agcttggttg tcgcttcacg caagtgatca aggttgtcga
     2101 gctcgagtgc caactgtcca agcaaaaccg gataggacgg atcgtttccg actgcagggc
     2161 tcttcatggc ctcagcgacc aatagcattg cttgctgttt ctgttctttg gttccctgtt
     2221 gtttttcgga cggatatgcg agtgcttgtg cgaggctgat caagttctcg ggagatcgat
     2281 tcttcgacac ggcgtattgg agaagtccca ggccttcttc aattttgccc gacagcacca
     2341 aacaaattcc taatcgtcta atcaccggat caaactcggg cgcctttagc atcacgcctt
     2401 cgtaaagctt gaccgccacg tcaaatttgt tggtatccat cgcgatcgta gcaagcttga
     2461 aattctcaag ttcggcggga gccacgagtt ttagctgttc ccaaatcgcc gcctcttttt
     2521 tgaggtcgcg ttcttgtggt tgttgagcga agctggtcga gatgagagtc gcaagcaata
     2581 aaacaacgag gggaagtcga atcttcattt gggctctttc aaagactggg aatgaggaaa
     2641 gcttctgagt cgaagggtgt tatgactcgc acacgagatt agccactata gacgtgggct
     2701 gtcaaaggtg aaataaccat cgcggtcgtg aatttgttga taatgctggt gccggcgaaa
     2761 ccttgtaata aaagggaaga aaatcttcgg agtcccgtct aatctttgtt agctgtagcg
     2821 ggggaaccga atggagcagc gcgccctaat ggcagatcag ataatcaatg gccgggttat
     2881 tgaagcctgc cagcgaggcg atcgcgatgc ctttcgagtc ctctttgaaa cttacaagga
     2941 caaagtttac tccatagctg tttattcgat tgggggcgac aaatcagtcg ccgaggacgt
     3001 gacccaacag atctttctta aactgttcac ggctattcag cagtttcggg gagattctga
     3061 attcacaacc tggctatatc gcctggttgt aaatgcttgt atggacgaac gacgtaaacg
     3121 acgcaagttg cttccgtggg gcgagagttt cgcattcact cccactcata agaagccaca
     3181 ggagaagcaa tatgctcggg tcgaaattgc agaggcggtc cagctggcga tcggtgaact
     3241 aaagccgaag tttcggttac cgattttgct caagtatgtg gagggtttgt cgtacgaaga
     3301 gatcgccagc gtgatgggtt gttcgaaggg gacggtcgct tcgagactta atcgaggcca
     3361 tggccaatta gcaaaacaac ttgggcattt acgcgaacac gcttttcaag aggaatagtt
     3421 ttcggagatt gagaatgttt tcaaggcacg tcaccagaaa tatttcggct tactgtcatg
     3481 gtgaagtaag cgctgaggaa gcgcgagagt tcaccgcgca catcatggcg tgtactaagt
     3541 gtcggaatcg atttgaagaa atcaagcttg ggataaagtt tgc
//
LOCUS       DATCGC010000503         1093 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_174861, whole genome shotgun sequence.
ACCESSION   DATCGC010000503 DATCGC010000000
VERSION     DATCGC010000503.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1093)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1093)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1093
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174861"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            165..941
                     /locus_tag="VIJ87_04785"
     CDS             165..941
                     /locus_tag="VIJ87_04785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003060868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HEY5443783.1"
                     /translation="MSAPEKATKSSVRELVSAEEWQARIDLAAAYRLVADYGWDDLVF
                     THISARVPGPEHHFLINPYGMMFEEITASSLVKVDLEGNIVMDSDYSINPAGFTIHSA
                     VHAAREDAICVMHLHTDHGIAVSAQELGLLPISQQALFVLASLGYHDYEGLALNDEEK
                     PRLVADLGKKTFLILRNHGLLTVGQSVADAFLSMFLLERACRIQILAQSGGSKLVPIP
                     EKILGQIPAQEAVVTKGGRGQLAWPGLLRRLDRIGSNYRD"
BASE COUNT          262 a          275 c          284 g          272 t
ORIGIN      
        1 tccgataagc tcgatgtccg ataaacttta gtttgtcgtt gtccgatatg ctctagtttg
       61 tcgatgtctc agcgaatcgg aaccactagt atctttgatt agttcagcga gtggcagttc
      121 taagaaaacg acaaactaaa gtttatcgga cactaggagg acttatgagc gcccctgaaa
      181 aagcaacgaa atcaagcgta cgcgaacttg tttccgcgga agagtggcaa gcacgaatcg
      241 atctggcggc cgcctaccga ttggtcgcgg actacggctg ggacgatctc gtctttacac
      301 acatctcggc gcgcgtgccg ggtcccgaac accatttcct catcaatcct tacgggatga
      361 tgtttgaaga gatcactgct tcaagtttgg tgaaggtgga cctcgaaggc aacatcgtca
      421 tggattcgga ctacagcatt aatccggcag gtttcacgat tcacagcgcc gtccacgcag
      481 ctcgtgaaga cgcgatctgc gtcatgcact tgcacactga ccatggtatc gcggtgtcgg
      541 cccaggagtt gggcctattg ccgatctcac aacaagcgtt gtttgtgctg gcgtcactcg
      601 ggtatcacga ctatgaagga cttgcgctca acgatgaaga gaagccccgt ctggttgcgg
      661 atcttggcaa gaagacgttt ctaatacttc ggaatcacgg tctgttaact gttggccaat
      721 cagtagccga tgcatttctt tcgatgtttt tgctggaacg tgcttgccgt attcagatac
      781 tggctcaatc gggtgggagc aaattggttc cgatcccgga aaagatactt ggtcagattc
      841 cagcacagga ggcagtagtc actaagggtg gtcgcggtca gctcgcctgg cccggtctac
      901 tgcgccggct agatcgcatc ggctcaaact accgcgacta aggaaatcag acacagatca
      961 aacggacaaa ctcagatcaa aaaaacaaag aggcgatggt tcgcctcttt tttcttatca
     1021 gtgttttagc cgtccaatct gtggctaatt caatcaccgc cggcgcttgc ttgaacgtgg
     1081 tcgtcatgtc cct
//
LOCUS       DATCGC010000504         1661 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_240739, whole genome shotgun sequence.
ACCESSION   DATCGC010000504 DATCGC010000000
VERSION     DATCGC010000504.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1661
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_240739"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..997
                     /locus_tag="VIJ87_04790"
     CDS             <1..997
                     /locus_tag="VIJ87_04790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443784.1"
                     /translation="ATVFDADGRITCTDTSLPDVPQARCAAWGGAVRLFGCFIGSATA
                     VTQYTIRHRRRVGASWSGWDFYQEGMFLQKIGFLFPQQVGPFDRNLEVVNGGGLVSAK
                     AYDNIEMNFAWAASDWFLKAVISTGGGSPAYAPTPNTVQFQLQGYDSSGNFVVGATDT
                     VTLYIDNNPVELDLPTVTMGTQTGGECALFDLTGEPNPAVITVRFKAVQDEGFLASYG
                     LTVRKGNFGPPFLISTTTGPLGEASGALSNSYVHGGTTPCGELFGTRPPDEPLADAGD
                     YVTAYIIPTTGNWLAVDQTFCTFSLNVGASMRRTNGYNTSEDGFGPVQYLLGIQQ"
     gene            999..1340
                     /locus_tag="VIJ87_04795"
     CDS             999..1340
                     /locus_tag="VIJ87_04795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443785.1"
                     /translation="MRFYWLIISVLSVWRVTHLFVAEDGPWNLLARLRRRMGEGFFTS
                     LFDCFYCLSLWISAPVAWFVGSGRKERLLLWLAISGGAILLERATDRSTSTQSTIYYE
                     DPEDDDGMLRK"
     gene            1381..1575
                     /locus_tag="VIJ87_04800"
     CDS             1381..1575
                     /locus_tag="VIJ87_04800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443786.1"
                     /translation="MSFTPPAPTFQYFEYVGTTGLTAIGNVTGHRYRFAGPGVPVEVD
                     SRDAPSMAGVPNLRRVKSNG"
BASE COUNT          372 a          422 c          472 g          395 t
ORIGIN      
        1 cgcaacggtg tttgatgctg acggcagaat cacctgtaca gacacaagtc ttcccgatgt
       61 tccgcaggca cgttgtgctg cctggggagg tgcagttcga ctctttggct gtttcatcgg
      121 cagtgcaacc gcagtgacgc agtacaccat tcgccatcga cgcagagtgg gcgctagctg
      181 gagcggttgg gatttttacc aggaaggtat gttcctgcaa aaaatcggat tcctttttcc
      241 acaacaggtt ggaccgttcg atcgcaatct tgaagtcgta aatggcggag gcttggtttc
      301 agccaaggcc tacgacaaca tcgaaatgaa cttcgcctgg gctgcgtccg attggttcct
      361 caaagcagtg atcagtactg gcggtggttc gcctgcttac gccccaacac cgaacacggt
      421 tcagtttcag ttgcagggtt acgactcatc tggaaacttc gtggttggcg caactgacac
      481 ggtgacgttg tacatcgaca acaacccggt tgagctcgat ctaccgacag tgacgatggg
      541 aacgcaaaca ggtggcgagt gcgccctgtt tgatctcact ggagaaccaa atccggcggt
      601 cattactgtt cgtttcaaag ctgttcagga cgaaggattc cttgcttctt acggactgac
      661 ggttcgcaag ggcaacttcg gacctccgtt cctgatctcg acgaccaccg ggcctctcgg
      721 cgaagcgagc ggcgcgcttt ccaattcata cgttcacggc gggacaactc cctgcggtga
      781 actgtttggt acgcgtccac ccgatgagcc cctggcagac gcgggcgact atgtaacggc
      841 gtacatcatc ccgactaccg gcaactggct ggcggttgat cagacgttct gcacattctc
      901 gctcaatgtt ggtgcttcaa tgcgtcggac caacggttac aacacctccg aggatggctt
      961 cggtccagtt cagtacctgc tggggattca acagtaacgt gcgcttttac tggttgatca
     1021 tcagcgtact ctcggtatgg agagtcactc atctgttcgt cgctgaggac gggccatgga
     1081 acctgctggc acgtctgagg cggcgaatgg gtgagggatt cttcacatcg ttgtttgatt
     1141 gcttttactg tttgagcctt tggatttcag ctccggtggc ctggtttgtg gggtcaggac
     1201 ggaaagaacg gctgttactc tggctggcaa tttcgggtgg tgcgatcctg ttggaacgcg
     1261 cgacagatcg ttcgacttca actcaatcaa caatctatta cgaagatccg gaggatgacg
     1321 atgggatgct gcggaaataa cagaagaccg ctcccggttg aaaacaacga ggtgccacaa
     1381 gtgagcttca caccaccggc gccaaccttt cagtactttg aatatgtcgg cacaactgga
     1441 ttgactgcga ttggcaatgt gactggacat cgttatcgct tcgctggacc aggagtaccc
     1501 gttgaggttg actcacgcga tgcaccatcg atggccggcg taccaaatct tagaagagtg
     1561 aagagtaatg gttaagaagg cagaacgatc caggaagaac aagctgggag gggcaagcga
     1621 gtggcacaga cttcagtctg tgtttgaatc aactacaagc t
//
LOCUS       DATCGC010000505         1114 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_107141, whole genome shotgun sequence.
ACCESSION   DATCGC010000505 DATCGC010000000
VERSION     DATCGC010000505.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1114)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1114)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1114
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107141"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..908
                     /locus_tag="VIJ87_04805"
     CDS             <1..908
                     /locus_tag="VIJ87_04805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443787.1"
                     /translation="DASGFHNRLFLIATLKGDEDEARRQVDWYAGKPDEYQMREIQGR
                     AFAFAGRRRQASEAFEQAASMAQQRGLPAERIRILVNEANMNALLGQSQLAQKQMATV
                     LQLMATEKVAPEDFQPSLIQQLDSPGVVWTLTLCHDSATAESLASGAVTKFPKDTLQR
                     RVWDPVIRAQLELNRGTSEGRESAIQLLQGARQYEASTFFRPRWVRAQVYLAAKDGVH
                     AAAEFQKIIDHRGWDTLSPLWPLAHLGLARSFALQGDVLKSRQAYEEFFRWWKGADND
                     ARLLLEAKREYSTLKIPTVANNRLN"
BASE COUNT          287 a          265 c          312 g          250 t
ORIGIN      
        1 tagatgccag cggatttcac aaccgtctct tcctgatagc aactctcaag ggcgatgagg
       61 atgaggcaag gcgtcaagtc gattggtatg ccggaaagcc ggatgaatat cagatgaggg
      121 agattcaagg gcgggctttc gcttttgccg gtcggcgccg acaagcgagc gaggctttcg
      181 aacaggcagc cagtatggcc cagcagcgtg gtttgcccgc agagagaatc agaatactgg
      241 taaacgaagc gaacatgaat gcgcttttgg gtcaaagcca gttggcgcaa aagcaaatgg
      301 cgacggtgtt gcagttaatg gcgacggaga aagttgcacc cgaagatttt cagccatcgt
      361 tgattcagca actcgactca ccgggtgtgg tttggacgtt aaccttatgt catgactcgg
      421 caacagcaga gtcgcttgct agtggcgctg taacaaagtt tcctaaagac actttgcagc
      481 ggagagtatg ggatcccgta attcgggctc agcttgaatt gaatcgcgga acatctgaag
      541 gacgtgagag tgcaattcaa ttgctacaag gagcgcgcca gtatgaagct tccacatttt
      601 ttcggccgcg atgggtgcgt gcacaagttt atctagcagc aaaagatggc gtacacgcag
      661 cggcggagtt tcaaaagatc atcgaccatc gcggttggga cacgctgtcg ccactctggc
      721 cgttggccca tcttggtctc gctcgttcgt ttgctttaca aggtgacgtg ctgaagagtc
      781 gacaagctta tgaagaattc ttccgctggt ggaaaggtgc tgacaatgat gcgaggttat
      841 tactcgaagc aaaacgcgag tacagcactt tgaagattcc gactgtggcc aacaaccgat
      901 taaactaaat cgagtccgga gccctccttg acagtcgggc tactgccacg tgctacctcc
      961 tcggactact gccccgggat ccgagtatcg accgcaaccc aattaagctc ccaggtcttt
     1021 ccgccatctg cggaaaatga ttgttcaaat cgacatgagt ttggagtgat atcggaaatg
     1081 acgaaacgaa ccagaatgga tcgaccgttc aaag
//
LOCUS       DATCGC010000506         1177 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_308697, whole genome shotgun sequence.
ACCESSION   DATCGC010000506 DATCGC010000000
VERSION     DATCGC010000506.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1177)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1177)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1177
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_308697"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            386..754
                     /locus_tag="VIJ87_04810"
     CDS             386..754
                     /locus_tag="VIJ87_04810"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEY5443788.1"
                     /translation="MLKIYAKNLGNIGILSLQGRLVIGETGILRNAVDSLCKTSVTLD
                     MAGVDTVDAHGLGVLLDLRQRTLSKGMRFELMNVSKPMTRVLEICKLNTVFEITSTVE
                     FFPAMAREQRASYAALKSCA"
BASE COUNT          316 a          280 c          290 g          291 t
ORIGIN      
        1 gcgtctattt cagtcagttt tgagcgactg atgttcaatt ccctgaaatt gtggataaga
       61 gtcctttcgt ttgtagcaag caaaagaggc tgactgatcc gagaaacata tctacggtag
      121 tggcgtacta atctcgtgga accaaggaga cgagcctatg gcaccccggc caagctagct
      181 cacgtggttt atatgacaag acgtttacgt cctttgtgag aagttttgaa aaaagttgaa
      241 atgaaattcc ttctcggcgg tgttatctct acgggcgaaa agattaggcc atcgttaaga
      301 aagctgagcg gagagtgtta acaagctggg actgatggac gtctcaataa tgacgcgagg
      361 aactaagcgc aaaggggaga acgttatgtt gaagatatac gccaaaaact tggggaatat
      421 cggtatcttg agcctgcagg gccgacttgt gatcggtgaa acaggaattc tacgaaatgc
      481 tgtagattca ttgtgtaaga ccagcgtcac tctcgatatg gcgggagtcg atacagtcga
      541 tgcccacggt ttgggagtgt tgttggacct gcgacagcgg acgctgtcaa agggaatgcg
      601 tttcgaactt atgaacgtta gcaaaccgat gaccagggtg ctggaaatct gcaagctgaa
      661 tactgtcttc gaaattacct cgaccgttga attcttcccg gcaatggctc gcgaacaacg
      721 tgcatcttac gcggcactca agtcgtgtgc gtaggtatta ccttcggtgt tctctgtggt
      781 tcacccaatc agcggtgacc acagaaaaca caaagtgccc tcctgttgag aaaaccacac
      841 agaagctagc cgcatatccc caccttgttc tagaatacct tccgtcctaa tagaaatttc
      901 ccaagctctc ttatcactct cgttttgttt aaggcgaacc caggcgtcat ttgcagatga
      961 gtccctcctc gttttgtcga gcgcccattc tccatccaca gattacgcag atgacacaga
     1021 ctgagcagga caaaatgtcc gataaacttg tttgtcgtgc gtcataagct aagaccccgg
     1081 atggctggag gcacgacaag acagacgtta tcggacttag aatcgccaat cgccaatgac
     1141 cctgtccccc aacatcacac tcggtcacta caccgtt
//
LOCUS       DATCGC010000507         1232 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_308805, whole genome shotgun sequence.
ACCESSION   DATCGC010000507 DATCGC010000000
VERSION     DATCGC010000507.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1232)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1232)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1232
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_308805"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            407..>1232
                     /locus_tag="VIJ87_04815"
     CDS             407..>1232
                     /locus_tag="VIJ87_04815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443789.1"
                     /translation="MRFFRLAILLTFLVALSLSPFSVAHTSPKSAQPDPITDEDLIAS
                     YHGVEADVASGNDDLPGGIREEIPLKYVNRYNEWKEEFLSTDAGRSQWNYYHNNPNFT
                     LNIVVARENAEGATTGKYKWNDAGQLVGATITLGIRLDEGYPNPIYFPVMNSLVPNDS
                     QARISGNTLAATKLAHEFGHVNRTGKVDSTVYQLQTQLIPQYNKIFLSNGRNPNDPRL
                     VELSQKIGGTPVQIWEDREYWGEANAMMYLRDRVTEESLRCTLFSKIRHSVDLYAKD"
BASE COUNT          343 a          346 c          272 g          271 t
ORIGIN      
        1 gtgtcgaaga aattaacccc gagatcgacc gcttcgtgaa gcgctcgcaa ggattcgtcc
       61 gaatccactt caccccaggc actgcctatc gcccatgccc caaaactgac ggacgagaca
      121 cgccatccag tacttcccag ctctctatag ttcaccgctc agtctccctt cggatacaaa
      181 aatggagtcc caccctcttt ttagtaacat ctttggggtc aaaattcatc gtggattcag
      241 ccggtcctaa atccatctta aaatccggaa atcagcccat tttatcgtgc taaaagtgtt
      301 gacttataag tgtatatggt ttagaaatca tcacccagca attcagtaga gagccccgca
      361 cctttcacta acgaacgcgt ctatccgacg cacgaggaat tgcaaaatga gatttttccg
      421 attagcgatt ctgctgacgt ttttggtcgc gttatcactg tcaccgttca gcgtcgctca
      481 cacatcccca aagtcagccc aaccagaccc aattaccgat gaagacctga ttgcttctta
      541 tcacggcgtc gaggcggacg tcgcatcagg aaacgacgac ctgccgggag gcatcaggga
      601 agagattcca ctcaagtatg taaatcgtta taacgagtgg aaagaagagt tcctgtccac
      661 cgacgccgga cgctctcaat ggaactacta tcacaacaat ccgaacttca ctctcaacat
      721 cgttgttgcc cgcgaaaacg ccgaaggagc aactacgggc aagtacaaat ggaatgatgc
      781 gggccaactt gtaggcgcaa caataaccct gggcattcgt ctcgacgaag gttacccgaa
      841 cccaatctat ttcccggtca tgaattcact cgtgccgaat gattctcaag caagaattag
      901 cggcaacacg ctggcagcca ccaagcttgc gcacgagttt ggtcacgtca atcgaacggg
      961 gaaagtcgat tcaacagtct atcaactcca aacgcaactc atcccacagt acaacaagat
     1021 atttctgagc aatggccgta acccaaatga cccgcggctt gtagagctct cacaaaagat
     1081 tggcggcacg ccggttcaaa tctgggagga ccgcgaatac tggggcgaag caaacgcgat
     1141 gatgtatctg cgtgacaggg ttaccgaaga aagtcttcgc tgtactctct tcagcaagat
     1201 ccgccatagt gtggacctct acgccaaaga ct
//
LOCUS       DATCGC010000508         2365 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_340007, whole genome shotgun sequence.
ACCESSION   DATCGC010000508 DATCGC010000000
VERSION     DATCGC010000508.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2365)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2365)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2365
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_340007"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..817)
                     /locus_tag="VIJ87_04820"
     CDS             complement(<1..817)
                     /locus_tag="VIJ87_04820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443790.1"
                     /translation="MHFANGWLSFELGVLRRLTFSSVAFPFTGEPELALQLKRWKIRV
                     ATNDPMLWSYTKGIALIENHGERLSDEDLETLLDEAYVPREKLDNPTLLKWFNEADAW
                     WFDNVRFNAEHLEPFKRALALTAGMMVGDYVLSFNEQTRSLREPLSLSKTFRLMLDCL
                     PAVHDNTLRNRSTNQDVREFVAERVHTDLMFLRLPVPVTQTSTARDPLISWREEWLRG
                     ADDFWVELERERGAKLGSRVQSKQQYLGFVEDLLRTASHIETWAIAHTENGFIS"
     gene            complement(828..1514)
                     /locus_tag="VIJ87_04825"
     CDS             complement(828..1514)
                     /locus_tag="VIJ87_04825"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HEY5443791.1"
                     /translation="MTAQGNELIDKAAAEAFAQLANTGDRFERYDNAHASRIATISDE
                     IAKIFHLARHDRGSLRVAALLHDLGEVAMERDYIQRAGSLTDEDLLDLARHPVIGERE
                     ASRVGADRAAQLLVRWHHEWWNGQGYPDALRREEIPLAARILRVADSYAALTDARPFR
                     PALSVEKAKREIADHAGIEFDPAVVNAFLSLEFLPELESFAIENELLSAEEKPVIKGD
                     KWDMFSSFMR"
     gene            complement(1649..>2365)
                     /locus_tag="VIJ87_04830"
     CDS             complement(1649..>2365)
                     /locus_tag="VIJ87_04830"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="J domain-containing protein"
                     /protein_id="HEY5443792.1"
                     /translation="EAFLDRMSRAESHYEVLDVDANSPMSDLKRAYYDIARKHHPDRY
                     RSNTSILSRVESAFARVTLAYDTLREPGPRATYDSKLEAQRRAARLAQSAPKGTSSGT
                     GAEQPSSASKSEESANIDPAQLAEKQFKDGFAALGLGQRNVALGLLGAAARTMPNEAR
                     YRAYYGRALAIHESTRRLAEVELQAAQKLDPGNSEYRIMLAELYRDLGFTVRAKGEVE
                     RALAMDANNNKARELLKSLG"
BASE COUNT          525 a          624 c          618 g          598 t
ORIGIN      
        1 ttgagataaa cccattttcg gtgtgagcaa ttgcccatgt ttcaatatgt gaggcagttc
       61 ttaacaggtc ttccacgaag cctagatact gctgtttgct ttgtacgcga gagcccagct
      121 tagcgccgcg ttccctctcc aactccaccc agaagtcgtc agcaccacgt agccactctt
      181 cgcgccatga gattagagga tctctggcgg tggaagtttg ggtcacggga accggcagtc
      241 ttaagaacat cagatcggtg tgaactcttt cagcgacaaa ttcacgcaca tcctgattag
      301 tacttctgtt tctgagagtg ttgtcgtgga ctgcgggaag gcaatcgagc atcaagcgaa
      361 aggtttttga tagcgagagc ggttcacgaa gcgatcgcgt ttgttcatta aacgacagca
      421 cgtagtctcc aaccatcatt cctgctgtca aagcgagtgc tctcttgaac ggctcgaggt
      481 gctcggcatt gaagcgaacg ttgtcaaacc accaggcgtc agcttcgttg aaccatttaa
      541 ggagtgtcgg attgtcgagt ttctcgcgag gaacgtaagc ttcgtcgagc agcgtctcga
      601 gatcctcgtc gctcagacgt tcgccgtgat tctcgatgag ggctataccc ttcgtgtagg
      661 accatagcat tgggtcgttg gttgcgacgc gaattttcca gcgttttagc tgcagcgcca
      721 gctctggttc tcccgtaaaa ggaaatgcaa ccgacgagaa agtcagtcgt cgtagtacgc
      781 ccaactcaaa acttagccaa ccattcgcga agtgcataat ttcagatcta cctcatgaac
      841 gacgagaaca tatcccactt gtcgcctttg attacgggtt tttcttcggc cgataacagt
      901 tcgttttcga tggcaaacga ctcgagttcc ggtaagaact cgagtgataa gaatgcgttt
      961 acaactgccg gatcaaattc aattccggca tgatcagcga tttctctttt cgctttttca
     1021 acagagagcg ccggacgaaa tggccgggca tcggtgagag cggcatacga gtcggccacc
     1081 cgaagaatcc gtgcggccaa tggaatttct tcacggcgaa gtgcgtcagg atacccctga
     1141 ccgttccacc actcgtgatg ccagcgtacg aggagttgtg ctgctcgatc agctccgacg
     1201 cgagacgctt cgcgctcgcc aatcacggga tgacgtgcca ggtcgaggag atcttcatca
     1261 gtcagtgatc cggcacgctg aatgtaatcc ctttccatag cgacttcacc gaggtcatgc
     1321 agaagagctg caactcgcaa cgaacctcga tcgtgacgtg ccaaatggaa gatctttgcg
     1381 atctcatcag aaatcgtggc gatccgagac gcgtgtgcgt tgtcatatcg ttcgaatcta
     1441 tcgccagtgt ttgccagctg cgcaaaggcc tcagcggcgg ccttgtcgat taactcatta
     1501 ccttgagccg tcatagttgt tgtgctgcct gatcttccta aagcagattg aagtctgtgc
     1561 cactttcaaa aaccttactg gcatttcatc acacgagctc gactgtcgca aatgtcagca
     1621 agaacacagc ctgaagactg tgtccctgct aacccaggga cttcagtagc tcacgagctt
     1681 tattattgtt ggcgtccatc gccagagcac gctcaacctc accctttgct ctaacggtga
     1741 agccaagatc tcgatagagt tccgccaaca taatcctata ttcagagttt ccggggtcta
     1801 gtttctgtgc tgcttgaagc tcgacttctg cgaggcgtcg ggtgctttca tgaatcgcga
     1861 gagcgcgtcc gtaataggcg cgatacctgg cttcatttgg catcgttcgc gcggcagcgc
     1921 ccaggaggcc gagagcaaca tttcgctggc ctagaccgag tgctgcgaat ccgtctttga
     1981 attgcttctc tgccagttga gctggatcga tattggcgct ctcctcactt tttgaggcgg
     2041 aacttggttg ctcagctccg gtgcctgatg acgtaccctt tggcgcagat tgcgctaacc
     2101 gagccgctcg tctctgtgcc tcaagcttgg agtcgtaggt ggctcgaggc ccgggttctc
     2161 tcagggtgtc gtacgcgagt gtaacgcgtg caaatgcgga ttcaactctc gagagaatcg
     2221 atgtgttcga tctatatcga tccggatggt gctttcgggc aatgtcgtaa tacgcccttt
     2281 tgagatccga catcggggag tttgcgtcga cgtcaagcac ttcatagtgt gactcggccc
     2341 tggacatgcg atcaagaaaa gcctc
//
LOCUS       DATCGC010000509         1151 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_473791, whole genome shotgun sequence.
ACCESSION   DATCGC010000509 DATCGC010000000
VERSION     DATCGC010000509.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1151)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1151)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1151
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_473791"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..603)
                     /locus_tag="VIJ87_04835"
     CDS             complement(<1..603)
                     /locus_tag="VIJ87_04835"
                     /inference="COORDINATES: protein motif:HMM:NF042890.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6748 domain-containing protein"
                     /protein_id="HEY5443793.1"
                     /translation="MFTFKKVRALLFSVLLVSLALVPSVTQSRAPSPNNKTSPKESAT
                     QASVPNSTFYAVRPDMRKCASPMCGGYFVRRVNQTLTTCANGKQMAECYIAGIDWNGT
                     TQVDPGRTLIRGTLLTQEGYGALKVSEVWQAITDSTPSGEFYRVRDLGIRCIAAPCET
                     HTEAKLNTTITRKIAGVNLPSVEPPKELMEEVYRAMTGDQG"
     gene            789..>1151
                     /locus_tag="VIJ87_04840"
     CDS             789..>1151
                     /locus_tag="VIJ87_04840"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEY5443794.1"
                     /translation="MSNHLSRRNFLSNTAKMAVAATVYDSIQAKGASIFIRSVVPNEA
                     NTQAAAMQPWIAQLDEYCARHMRETGAPGLTLALANRDGLIRVSTYGFADTKAGLRVV
                     PETMFEIGSISKSFVGLAL"
BASE COUNT          277 a          301 c          290 g          283 t
ORIGIN      
        1 gccctgatcg ccggtcatag ctctgtagac ttcttccatc agctctttcg gcggttcgac
       61 cgaaggtaga ttaactccgg caatctttct ggtgatggtt gtgttcagct ttgcttcggt
      121 atgcgtctca caaggcgccg cgatgcagcg gatgccgaga tcgcgaacac gatagaactc
      181 gcctgacggt gtcgagtcgg ttatagcctg ccatacttca ctaaccttca gcgctccgta
      241 accctcttgt gtcagaagcg ttccgcggat caacgttcga ccagggtcga cttgagtcgt
      301 tccattccag tcgatgccgg cgatgtaaca ctcagccatt tgtttcccgt tggcacacgt
      361 agtaagagtc tgatttacgc ggcgaacaaa gtatcctcca cacatgggag aggcacactt
      421 ccgcatatcg ggacgcacgg cgtagaacgt tgaattagga actgaggctt gcgttgccga
      481 ttcttttggg gaggttttat tgttcggaga aggtgcgcgc gactgcgtta ccgacggcac
      541 caaagctagc gacactagaa gcactgagaa caacaaagct cgaactttct taaaagtgaa
      601 catatctttc ctcctcattg agacaaagac ccacaatcaa agaacgaacc tttgccggtt
      661 ttcatgcgcc agtcgttata atgcgcgaac aaaaaacagc cttgtgcttg ttctgagctt
      721 tctgtgagcg gcaaaactca tggcactcag actagggtaa ttcaaataca acaaagcgag
      781 aacactcaat gtccaatcat ctctcacggc gaaactttct ctcgaacacc gcaaagatgg
      841 cggtcgccgc aactgtttac gattcgattc aagccaaagg tgcctcgatc ttcatcagat
      901 ctgttgtgcc aaacgaggct aacacacagg cagcagcgat gcagccgtgg atcgcgcaac
      961 ttgatgagta ttgcgcgagg cacatgcggg aaaccggcgc acccggtctc accctggcac
     1021 tcgcaaaccg cgatggtttg attcgagttt caacttacgg tttcgcagat acgaaggcgg
     1081 gcttgcgtgt tgttcctgaa accatgtttg agattggctc gatctcaaaa tcgtttgtcg
     1141 gtttggcttt g
//
LOCUS       DATCGC010000510         1545 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_406588, whole genome shotgun sequence.
ACCESSION   DATCGC010000510 DATCGC010000000
VERSION     DATCGC010000510.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1545
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_406588"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..436
                     /locus_tag="VIJ87_04845"
     CDS             <1..436
                     /locus_tag="VIJ87_04845"
                     /inference="COORDINATES: protein motif:HMM:NF045169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443795.1"
                     /translation="ITIKSLGAVAKAGTTRVEGVVEYAETPKNRGLNLMQGPGYDQES
                     TPGLVAAGATVVVFTTGRGTTIGNAIAPVIKLASNTPIFERMSSDLDLSAGGVIDGTE
                     SIDEVGKRVFERVVDVATGEQARAEKHKHREFQFWAEQTVSL"
     gene            555..992
                     /locus_tag="VIJ87_04850"
     CDS             555..992
                     /locus_tag="VIJ87_04850"
                     /EC_number="1.11.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA];
                     GO_process: GO:0006972 - hyperosmotic response [Evidence
                     IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0033194 - response to hydroperoxide
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEY5443796.1"
                     /translation="MKRTASAVWQGGLKDGKGSISTDSGVLENTQYSFSTRFEEGKGT
                     NPEELIAAAHAGCFSMALSGQLGNAGLTAERISTSAAVTLEKTDAGFTITKVHLDVTA
                     KIPGATDEAFQTAAGNAKAGCPISRLLKAEITMDAKLETEVPA"
     gene            997..>1545
                     /locus_tag="VIJ87_04855"
     CDS             997..>1545
                     /locus_tag="VIJ87_04855"
                     /inference="COORDINATES: protein motif:HMM:NF021387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050043 - lactate racemase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lactate racemase domain-containing protein"
                     /protein_id="HEY5443797.1"
                     /translation="MSTEVLTPRVVGEGSPIGGLAPATLAAIVEQALEVVEPGERVLA
                     IVPDKTRDDNTDLLFPIATKLLTERSVKCFDVLVAQGTHPPITNEQKLSKLGLEEFSG
                     SLFDHRWDSPEDLITLGELTADEVSQLTNGLIANPVSVSLNKLLAPGVYDTILIFGAT
                     VSHEVAGFAGGAKYFFPGVAGPD"
BASE COUNT          388 a          383 c          413 g          361 t
ORIGIN      
        1 catcacgatc aaatcattgg gtgccgttgc caaggcagga acgacgcgcg tggaaggtgt
       61 cgtcgagtat gcggagacac caaagaatcg tggtctcaat ttgatgcaag gtcccggtta
      121 cgatcaggag tcaacaccag gtttggttgc agcgggcgct acagttgttg tgttcacgac
      181 cggtcgggga acaactattg gaaacgcaat cgcaccagtg atcaaacttg cttcgaacac
      241 gccgatcttc gagcgtatgt ccagcgatct tgatttgtct gccggcggcg tgattgacgg
      301 caccgagtcg attgatgaag tcgggaagag agtgttcgaa agagttgtcg acgtagcaac
      361 cggtgagcag gcgagagctg aaaagcataa gcaccgagaa tttcaattct gggccgagca
      421 gacagtgtcg ttgtaggtat cttgcagatg tccgatatgc gtctgtcttg tcgtgattca
      481 gctaagggcg ctccttgctg atctcaacga caagacagac gcatatcgga cataaatttt
      541 attgggggaa actaatgaaa cgcacagcat cagcagtctg gcagggtggt ttaaaagatg
      601 gaaaaggatc gatttctact gacagcggag ttctcgagaa cactcagtat tcattcagca
      661 ctcgttttga agaaggcaaa gggacaaacc cggaagaact catcgcagca gcacacgcag
      721 gttgtttttc gatggccctt tcgggtcaac tcggaaacgc cggcttaacg gcagaacgca
      781 tcagtacttc ggccgctgtc acattggaaa agaccgatgc cggtttcaca atcactaaag
      841 ttcaccttga cgtaactgca aagattccag gtgcaaccga cgaagcattc caaactgctg
      901 ccggtaacgc caaagctggc tgtccgattt ctcgtcttct caaagccgag atcacgatgg
      961 acgctaaact cgagaccgaa gtgcctgcct aattccgtgt caaccgaagt tctaacaccg
     1021 cgtgttgttg gggaaggctc accgattggt gggctggcac cggcgacact cgcggcgatt
     1081 gttgaacaag ctcttgaagt ggttgagcct ggtgaacgcg tcctcgcgat cgttccggac
     1141 aaaactcgcg acgacaacac cgatctactt ttccccatcg ccacaaaact tctcaccgaa
     1201 cgtagtgtta agtgtttcga cgtccttgtt gcgcaaggca ctcatccgcc cataacgaac
     1261 gaacaaaagc tctccaagtt gggactcgaa gagttttccg gctcgctgtt tgaccatcgt
     1321 tgggatagcc cggaagactt gataacactg ggcgaactta ccgccgatga agtttcgcaa
     1381 ctgacgaatg gcttgattgc taatccagtc tcagtcagtc ttaacaaact gcttgcacca
     1441 ggcgtttacg acacgatcct gatttttggt gcaactgttt ctcatgaagt cgcaggtttt
     1501 gcaggcggtg cgaagtattt ctttcccggt gtcgctgggc cagat
//
LOCUS       DATCGC010000511         4428 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_473821, whole genome shotgun sequence.
ACCESSION   DATCGC010000511 DATCGC010000000
VERSION     DATCGC010000511.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4428)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4428)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4428
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_473821"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            126..1202
                     /locus_tag="VIJ87_04860"
     CDS             126..1202
                     /locus_tag="VIJ87_04860"
                     /inference="COORDINATES: protein motif:HMM:NF025945.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443798.1"
                     /translation="MELFKLQSDFHPGPTVTINETAELAWVERYQEAGEFQLVVKDDI
                     TIRTALPTGTLISHTDTSEVMIVEDHHVERNKDKVLTVTITGRSFETFTEQRVTNASK
                     QAVMTATDDALGEMYGPATSAGVVEHILLYALQTEIADFGEDIPNVYVSQDMRTTDAL
                     LTYAIKRGEVYSAVQELLKLNDVGIKNVRPAYAANGLRIYVHDGADLSGSVVFYAQYE
                     DLDDAQYYESIKEYKTHAWVAGKYWARPIKSRRIAGTPTGLAKRIMYVEDQNLDGDYS
                     TPATGDVLDTRGQQELDQHPYINLMSATIAPTAIPKFKIDYDVGDLVTVFGEFDVAQR
                     MRVAEHTLTLDQSGLQGFPSLIIA"
     gene            1217..1609
                     /locus_tag="VIJ87_04865"
     CDS             1217..1609
                     /locus_tag="VIJ87_04865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443799.1"
                     /translation="MAQIIDIDNEAPIFNVKEVVIGSQWKFAIRFRHLVSQDPDTFAD
                     FDFSGMILEADVKDKPKIDVTPDAVITCTPRVPSDGWVDFFMDGDVTASLLPKKYLAS
                     LKVYPTGHPELGDTLCQFTLNVKLMATR"
     gene            1606..1956
                     /locus_tag="VIJ87_04870"
     CDS             1606..1956
                     /locus_tag="VIJ87_04870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443800.1"
                     /translation="MSDLYSVTINNEDIIMQVSDIDFGTVVIGGTQMAQVSVMGGVPG
                     PPGTPGPGSAGFNFTQSTPASTWIINHNLGYRPGVELMSSGGMEMIGEVLHISVNQVQ
                     VSFNEAVDGFARLV"
     gene            1969..2769
                     /locus_tag="VIJ87_04875"
     CDS             1969..2769
                     /locus_tag="VIJ87_04875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443801.1"
                     /translation="MATVLVRADHDYNSVSKILNLVDPTGAQDAATKAYVDSLVEGLA
                     WKDSVRVKAPGNVTVSAPGASVDGITMAAGDRMLLNNQTTTTENGIYIWNGAATPATR
                     APDASTSNELEQAVTTVEEGTSANTTWRQQTVNFVLGTGSPSFVAFGTGASAASETVA
                     GIAEIATQAETDAGTDDARMVTPLKLKTSPFVHKGFASSFGDGSATSYVITHNLNSLD
                     VSVYVYENGGSKRQVVCEVQHTSVNSVTLLFSSSVASNALRALVTKVA"
     gene            2769..3455
                     /locus_tag="VIJ87_04880"
     CDS             2769..3455
                     /locus_tag="VIJ87_04880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443802.1"
                     /translation="MAVPRLADFTPEQGVEIFDLSAATDVAVGDLFVIVDVSDTTGDG
                     NGTTKKITGATVATGLQLISAFPRVKRLGTQHSISSTTGTVVSDLTMALEIGTFLFTY
                     TLLVRSATATVGPMVGVNFTGTGNPRQIAYWADNTAALTDETYGMSNQGSKSFGFIAG
                     MADSTKSTTAPAMGSTVGVKTTATDTLMIVQGIIIVTVAGNLELYHSSETASATSVEV
                     GSSLMVNKTG"
     gene            3457..4239
                     /locus_tag="VIJ87_04885"
     CDS             3457..4239
                     /locus_tag="VIJ87_04885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443803.1"
                     /translation="MSRLLIQGGGGAGTALLMQGAPGQALLTQGNYQDLGGSGAYLSL
                     PGSAGNYLSAPHNAAYNPAGDFTVIAYVLSPDWTPSTEQTIASKYVSAANGAWRMLID
                     NSPLGMASLAISIAGVADQASGTVTTESITGVAANEGVWLKMEFETSTGLVDMFYSKD
                     PPYKEPETITWTTLQLNRAATAGVLGAGNTANLEIGSFNGGANSPFNGRIYRVAGYTS
                     LTEATGNKIFDMDPKDWVSGSSWVSSRTGETWTLNGTASVVK"
     gene            complement(4240..>4428)
                     /locus_tag="VIJ87_04890"
     CDS             complement(4240..>4428)
                     /locus_tag="VIJ87_04890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443804.1"
                     /translation="PAKLPNRSVSTLLSAMIAEAIMSLEKITLYASIRASKNITPPFW
                     RVFRPIRPSQGYVKSLPF"
BASE COUNT         1204 a          929 c         1080 g         1215 t
ORIGIN      
        1 attaaccccg gagctgtttg gccaaaactt tacagcgggg tcaattcatt ttcgtggaca
       61 ttcgcctcca gctggggtca tttcacagca gctagttata ttcctagata ctggggagtg
      121 taagtatgga actgttcaaa cttcaatcag attttcatcc tggtccaacc gttacaataa
      181 acgaaacggc agaactagcc tgggttgaac ggtatcaaga agctggcgaa tttcaattgg
      241 tggtaaagga tgatattacc atccgaacag cacttcctac tggtacgtta atctctcata
      301 cagataccag tgaggtaatg atcgttgaag atcatcatgt tgaacgaaac aaggacaaag
      361 ttcttactgt aacaatcaca ggtagaagct ttgaaacctt taccgaacaa agagttacta
      421 atgcgtctaa gcaagcagtg atgactgcta ctgatgatgc tcttggcgaa atgtatggtc
      481 cagcaacatc ggcaggagtt gttgaacata ttctattgta tgcgttgcaa acagaaattg
      541 ccgacttcgg tgaggatatt ccgaatgtat acgtgtcaca agacatgcgt actacagatg
      601 cattgttgac ttatgccatc aaacgtggcg aagtatattc tgcagtacag gaattactca
      661 agcttaatga tgttggtatc aaaaatgtgc gtcctgctta tgctgccaat ggtttgcgta
      721 tatatgtaca cgatggagca gacttgagcg gaagcgtagt attctatgca caatacgaag
      781 atctcgacga tgctcaatac tacgaatcaa tcaaagaata caaaacgcac gcttgggttg
      841 ctggaaagta ttgggctcgt ccaattaaat ctcgtcgcat tgctggtact ccaactggat
      901 tagccaaaag aataatgtat gtcgaggatc agaatcttga tggcgattac agcacacctg
      961 ctactggtga cgttcttgac actagaggtc aacaagaact agatcaacat ccttacatta
     1021 atttgatgtc ggccacaatt gctccgacag cgattcctaa gttcaagatt gactacgatg
     1081 taggggatct tgtaacagtg tttggcgaat tcgacgtcgc tcagcgtatg cgagttgccg
     1141 aacacacact tacactcgac caaagcgggc tgcaaggctt cccgtcactg ataatcgcct
     1201 gaaaggagga ttgatcgtgg cacaaattat tgatattgac aatgaagcac ccatcttcaa
     1261 tgtcaaagaa gtagtaattg ggtctcagtg gaagttcgct attcgctttc gacatctggt
     1321 cagtcaagat ccggatacgt tcgctgattt tgatttctct gggatgattc tggaagcaga
     1381 cgtcaaggat aaaccaaaga ttgatgtcac gcctgatgca gtgatcacgt gtactcctcg
     1441 agtacctagt gatgggtggg tcgatttctt catggatgga gatgtgacag cctcacttct
     1501 accaaagaag tatttggcaa gcttgaaagt atatcctact ggacatccag aactaggaga
     1561 tacgctttgt caatttacgc ttaacgtaaa gttgatggcg acaagatgag cgatctatat
     1621 tcagtcacaa tcaacaacga agacatcatc atgcaggtgt cagacatcga ttttggaacc
     1681 gttgtaatcg gcggtacaca aatggcacag gtttctgtta tgggcggtgt tccaggccct
     1741 ccagggactc ctggacccgg ctcagcgggt tttaacttca ctcaaagtac gccagcatcc
     1801 acatggatta tcaatcacaa ccttggatat cgtccgggtg ttgaattgat gtcaagtggt
     1861 ggaatggaaa tgattggtga ggtacttcat atttcggtaa atcaggttca agtttcgttc
     1921 aatgaagccg ttgatggctt tgcaagatta gtctaaaagg agctaacaat ggctacagtt
     1981 ctggttcgtg cagatcacga ctataactca gtatctaaaa ttctcaacct agttgatccg
     2041 acaggggcgc aagatgcggc gaccaaagca tatgtcgact cacttgttga gggtttggca
     2101 tggaaagata gtgttcgagt taaggctccg ggcaatgtca ccgtttctgc acctggtgct
     2161 tcagttgatg gtattaccat ggctgctggc gatcgcatgc tgcttaacaa ccaaactaca
     2221 actacggaaa atggcatcta tatttggaat ggtgctgcaa ctccggctac tcgtgcacca
     2281 gacgcaagta cttccaatga actcgagcaa gcagttacca ccgttgaaga aggtacttca
     2341 gcgaatacaa cttggcgtca gcagactgtc aacttcgtgt tgggtactgg ttcgccgtca
     2401 ttcgtagcgt ttggtacagg tgcatctgca gcaagcgaaa ccgttgccgg tattgctgaa
     2461 attgctacac aggctgagac cgatgccggc acagatgatg ctcgcatggt cacacctttg
     2521 aagttgaaga cttctccgtt tgtacacaaa gggtttgctt cgtcgttcgg tgatggctct
     2581 gctacgagtt atgtgattac gcataacctt aactcattgg acgtcagcgt ctatgtttac
     2641 gagaatggtg gctctaagcg tcaggtggta tgtgaagttc agcatacttc cgtgaactca
     2701 gtgactctgc tgttctcttc gtctgtggcc tctaacgcat tgagggcgct tgtaactaag
     2761 gtggcataat ggctgttccc cgtttggcag atttcactcc agaacaaggt gttgagatat
     2821 ttgatttgtc agccgcaacc gatgtggctg ttggcgattt gtttgtgata gtggatgtat
     2881 ccgacacaac gggtgatggt aatggcacaa caaaaaagat tactggcgca acagttgcta
     2941 ctggtttgca acttatcagt gcttttccta gagttaaaag actaggtact caacactcga
     3001 taagctcgac caccggtact gtggttagtg atcttactat ggcgttggaa ataggtacgt
     3061 tcctgtttac atatacgctt ttagtaagat cagcaactgc aaccgttgga ccaatggtgg
     3121 gtgtcaactt tacaggtact ggcaacccac gacaaattgc atattgggct gataacactg
     3181 cagctttaac cgatgagaca tatggtatgt ccaatcaagg gagtaagagc tttggattca
     3241 ttgcaggtat ggctgatagt actaaatcaa caactgctcc tgcgatgggt tcaaccgtgg
     3301 gtgttaagac tactgctact gatacgttga tgatcgtaca gggtattatc attgttaccg
     3361 tcgcaggtaa cttggaattg taccatagct cggaaacagc aagcgctaca tccgtggaag
     3421 ttggttcttc cctgatggtt aacaagacag gttaacatga gcagattact gattcaagga
     3481 ggaggcggtg ctggtacagc actcttaatg caaggtgctc ccggtcaggc attgctcact
     3541 caaggcaact atcaagatct tggtggttca ggagcgtatt tgtcattgcc tggtagtgcg
     3601 ggcaactatc tatctgcacc acacaatgca gcatataatc ctgctggaga cttcactgta
     3661 attgcttatg tactgtcacc agattggaca ccatcgacag aacaaaccat tgccagtaaa
     3721 tacgtctcag cagcaaatgg tgcttggcgt atgttgattg acaactcgcc actaggtatg
     3781 gcttctctgg ccatttcaat tgccggagtc gctgatcaag catcaggaac agtaacgact
     3841 gaatctataa ccggcgttgc tgctaatgag ggtgtatggc ttaagatgga gtttgagaca
     3901 agcactggtt tggtagacat gttctattcc aaagatcctc catacaaaga gccagaaaca
     3961 attacttgga ctactctaca attgaacaga gcggcaaccg ctggtgttct tggcgctggt
     4021 aacactgcga atcttgaaat tggttctttt aacggtggcg ctaactctcc atttaatggt
     4081 cgtatttatc gtgttgctgg ttataccagt cttactgagg ctacaggcaa caagattttc
     4141 gacatggatc caaaagattg ggtaagtggc agtagttggg tcagttctag gaccggagag
     4201 acttggacac tcaatggtac agcaagtgtt gtgaaatagt caaaatggga gtgatttaac
     4261 atacccctga ctgggacgga tcgggcgaaa taccctccag aaaggcggtg taatgttttt
     4321 acttgcacga atactggcat acagggttat tttctctagt gacataattg cttcggcaat
     4381 cattgcagaa agtaatgtac tcacgcttct attcggtagc tttgcagg
//
LOCUS       DATCGC010000512         1030 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_406612, whole genome shotgun sequence.
ACCESSION   DATCGC010000512 DATCGC010000000
VERSION     DATCGC010000512.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1030
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_406612"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..237
                     /locus_tag="VIJ87_04895"
     CDS             <1..237
                     /locus_tag="VIJ87_04895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443805.1"
                     /translation="NGSLWCFKSSLHTGLTTLLMPQTAVCGYFKFNLLGQANLMESVV
                     PELHTVLQKLGLEQSKLPFVGFNSFPSDKCIGWT"
     gene            complement(279..>1030)
                     /locus_tag="VIJ87_04900"
     CDS             complement(279..>1030)
                     /locus_tag="VIJ87_04900"
                     /inference="COORDINATES: protein motif:HMM:NF039581.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase family protein"
                     /protein_id="HEY5443806.1"
                     /translation="LRHISVERGHDPRQFALLPFGGAGGLHAVELARSLRIPTIIAPT
                     SAGALSAVGVLVADVIKDQSRTVMIGCDPESLKNLPRIFKAMEKDAQAVLKREGFTEK
                     QQRHQRSLGMRYRGQSFELEVNETGASVEAAFHRVHRERYGYAQEQSQVEIVSARLRS
                     FGLVEKLPVEKIRSRKRRGEEKPNNHEMAYFSGRRTRVAVYSRDELNGGVRLKTPCIV
                     TEYSATTLIPEDAEVVVDQFGSLIIQLSDLL"
BASE COUNT          268 a          309 c          211 g          242 t
ORIGIN      
        1 aacggcagtt tgtggtgctt caagtccagc ctacacaccg gactcaccac tcttctaatg
       61 ccccaaacgg cagtttgtgg atacttcaag ttcaacctat taggacaagc aaacctgatg
      121 gagagcgtag tccctgagct acacactgtc ctgcagaagc ttggacttga acaatccaaa
      181 ctgccgtttg tgggattcaa ttcctttccg agcgacaaat gtataggttg gacctgaaca
      241 aactccaaac tgccgtttgg agtattttgc aagagactct aaagcaaatc ggacagttga
      301 ataatcaaac tcccaaattg atcgactacg acctcagcat cttcaggaat caaagttgtc
      361 gcggagtatt cagtaacaat gcacggcgtc ttcaagcgaa caccaccatt caattcatca
      421 cgactataga ccgccaccct cgttcgccgt cccgagaaat acgccatctc gtgattgttt
      481 ggcttctctt caccacgtcg ctttcgtgaa cgaatctttt ccaccggcag tttctctacc
      541 aacccaaacg atcgcagtct tgcacttact atctcaacct gactttgttc ctgggcataa
      601 ccatagcgct cgcggtgaac acgatgaaat gccgcctcga cagacgcgcc cgtctcgttc
      661 acctcaagct caaacgactg cccccgataa cgcattccta acgaacgttg gtgtcgctgc
      721 tgtttctcgg tgaagccttc cctcttcaaa accgcttgtg catccttctc catggcctta
      781 aagatccgcg gcagattctt cagagactcg ggatcgcaac caatcatcac cgttcgactc
      841 tggtctttga tcacatcagc gaccaacaca cctaccgccg acaaagcccc ggcagaggtc
      901 ggtgcgatga tagtcggaat cctaagcgag cgagccaact caaccgcatg tagacctccc
      961 gctccaccaa atggcaacaa agcaaactgc cttgggtcat gacctcgttc aaccgaaata
     1021 tgtcgaagtg
//
LOCUS       DATCGC010000513         1421 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_207043, whole genome shotgun sequence.
ACCESSION   DATCGC010000513 DATCGC010000000
VERSION     DATCGC010000513.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1421)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1421)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1421
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207043"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            220..>1421
                     /locus_tag="VIJ87_04905"
     CDS             220..>1421
                     /locus_tag="VIJ87_04905"
                     /inference="COORDINATES: protein motif:HMM:NF013123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DPP IV N-terminal domain-containing protein"
                     /protein_id="HEY5443807.1"
                     /translation="MKPLVTPALFVSLILCFASTAVAQNTSWDPELQLKIKAVGAPRV
                     SPDGKRVVYTVSEPVMTPDRSEYVTQVWMGNVATKQNMQLTFGEKSSTNPKWSPDGNW
                     IAFTSNRKDNKNNLYLMSANGGEAEALTEVKSGVANFDWAPDGKSIAFMMTDPKSDEE
                     EKNDKARNDFRWVDENIKMSRLYVLSLSKDTNGKREPRKLTTGNYNVDSFDWSPDGSR
                     IAFSFTKTPIANDWPTSDVSIVEVATAKITVLVNSALAETSPSYSPDGNSIVVLALEP
                     RWAQSGVLEVLPANGGQAKTLTATFDGQPGIAGWSSDSKRIYFSEAVGTGTQVSAIDV
                     ATNRIDDVNRNQGVVTGLSLNRSATTFAYIRQSPETPGDVYVASVANFTATRVSQANA
                     DLKLPAIG"
BASE COUNT          361 a          347 c          375 g          338 t
ORIGIN      
        1 gggcttaacg aggtcgaaat acttctgata gttcggatga tattcagttg atgcaggtct
       61 ttgcatgaag cgattgtacc gcgtgtgtct gcggtagaag aactgaggtg cgctcttggc
      121 tcaggtggta caacctgttg actttccgat tgctcgctag taaaagctgt tcacctcatc
      181 gcgtttcgca acagtcttac tcttcaggag aatcgaatca tgaaacccct tgttacgccc
      241 gcgttatttg tcagtcttat tctatgtttc gcgtcgactg ccgtcgctca aaacacttcc
      301 tgggatcccg agttacagtt gaaaatcaaa gcggttggtg cgccgagggt ttcgcctgac
      361 ggtaagcgag tggtgtacac ggtgtcggaa ccagtaatga cgccggatcg aagtgagtat
      421 gtgactcagg tctggatggg aaacgtcgct acaaagcaaa acatgcagct tacgtttggc
      481 gaaaagtcct ccactaatcc gaaatggtcg ccggatggaa actggatcgc cttcacttca
      541 aatcgcaagg ataacaagaa caatctgtac cttatgagtg cgaacggtgg cgaggcagaa
      601 gccttaaccg aagtgaaaag tggcgtcgcg aactttgact gggcacctga cggtaagtcg
      661 atcgctttta tgatgacgga tcccaagagt gacgaagaag agaagaacga caaggcgaga
      721 aacgattttc gttgggttga tgagaacatc aaaatgtcgc gactctacgt gctttcgctc
      781 agtaaggaca cgaatggcaa acgtgagccg cgtaagctga caacaggcaa ttacaacgtt
      841 gattccttcg attggtctcc cgacggatcg cggatcgcgt ttagtttcac caaaactccg
      901 atcgcgaacg attggccgac ttcagatgtt tccatcgttg aagtggccac ggcgaaaatc
      961 accgtcctgg tcaattcggc tctggctgaa acttcacctt cgtactcgcc ggacggaaat
     1021 tcaattgttg tattggcact cgaacctcgc tgggctcaaa gcggcgtgct tgaagttctt
     1081 ccagcaaacg gcggtcaagc aaaaacactc actgcaacct tcgatggtca acccggtatc
     1141 gccggctggt cgtctgatag caaacgcata tatttcagcg aagcagtcgg gaccgggaca
     1201 caagtctccg ctatcgatgt cgcaacgaat cgaattgacg acgtcaatcg aaatcagggt
     1261 gtcgtaacag ggttatcact caatcgttcc gctacaacgt tcgcgtatat ccggcaaagc
     1321 ccggaaacac ccggtgacgt ttatgtggct tcggttgcga actttactgc gacgcgagtt
     1381 agccaggcta acgccgatct aaaactgcct gccatcggga g
//
LOCUS       DATCGC010000514         1006 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_406619, whole genome shotgun sequence.
ACCESSION   DATCGC010000514 DATCGC010000000
VERSION     DATCGC010000514.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1006)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1006
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_406619"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..990)
                     /locus_tag="VIJ87_04910"
     CDS             complement(<1..990)
                     /locus_tag="VIJ87_04910"
                     /inference="COORDINATES: protein motif:HMM:NF014877.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443808.1"
                     /translation="MKLLKIGIAGVRGVVGESFTPELAVEFAQAFGTYMDGGRILVCR
                     DTRPSGSMVYAAVSAGLLGAGCEVLNLGVCTTPSLQLAIKQLEANGGIAITAGHNPEK
                     WNALKFVRGDGLYLNSTQGEELLDIYHQGEFSKTSWDKIKTTIERVDATANHIKKLKS
                     AFDVEAISRKHITVAVDYCNGACVELISRWLHELGCEVLAINDDPSAPFPHSPEPKPA
                     NMAQLQAVVKAGKADIGFAHDADGERLGVVTEKGEALPEESTLSLAAQIRLQQQVGPL
                     VTNVSTSSAIDMIASRFGSSVIRTPVGQAYISEAMLESGAVLGGEGSGGIAVPE"
BASE COUNT          232 a          284 c          238 g          252 t
ORIGIN      
        1 ttcagggacg gcgattccgc cgctaccttc gcccccaagc acagctccgg attccaacat
       61 agcttctgag atgtatgcct ggcctaccgg tgtacgaatc acagaagatc caaaacgcga
      121 agcaatcatg tcaatcgcac tactggtcga aacattcgtt acaagcggtc caacttgttg
      181 ctgcaatcga atctgagcgg ccaggctcaa ggttgactct tcagggagag cctctccctt
      241 ctcagtaacg acaccaagtc gttcgccgtc ggcgtcatga gcgaatccaa tgtcggcttt
      301 gccagcctta acaacagcct gcaactgggc catgttcgca ggtttgggtt ctggtgaatg
      361 agggaaggga gccgatgggt cgtcattgat tgccagcact tcacagccaa gttcgtgaag
      421 ccaacgcgag attagttcga cgcaagcgcc attgcagtag tccacagcaa ctgtgatgtg
      481 ctttcgacta atcgcttcaa cgtcgaacgc cgactttagt ttcttaatgt ggttcgcagt
      541 agcatcgact ctttcaatcg ttgtctttat cttatcccaa gacgtcttgc tgaattctcc
      601 ctgatgataa atgtcgagta gttcttcccc ttgcgtcgaa ttaaggtata gaccatcgcc
      661 gcgcacgaac ttcaatgcgt tccacttttc tggattatgt cccgctgtga tcgcaatccc
      721 tccattagcc tctagttgtt tgattgcaag ctgcaggctt ggtgttgtgc agacgccgag
      781 gtttagtacc tcgcatcccg ctccgagtaa acctgcgctg accgctgcgt agaccattga
      841 tccggacgga cgcgtatccc tacaaacgag aattcgcccg ccatccatgt atgttccgaa
      901 tgcctgagca aactcgacgg ccaattcggg ggtgaacgat tcgccaacta ccccacgaac
      961 gccagcaatg cctatcttta gaagcttcat aaaccaattt gcagcg
//
LOCUS       DATCGC010000515         1019 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_373349, whole genome shotgun sequence.
ACCESSION   DATCGC010000515 DATCGC010000000
VERSION     DATCGC010000515.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1019)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1019)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1019
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_373349"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..538)
                     /locus_tag="VIJ87_04915"
     CDS             complement(<1..538)
                     /locus_tag="VIJ87_04915"
                     /inference="COORDINATES: protein motif:HMM:NF022077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-loop NTPase"
                     /protein_id="HEY5443809.1"
                     /translation="MTELNEQVVLDALRQIKDPDLHKDIVTLGFIKDLKIDGGNVSFR
                     IVLTTPACPVKAEMESAAREFVGSLSGVTSVNVTMDAEVPKGRGLGEKVVIEGVKNIV
                     AVSSGKGGVGKSTVAVNLAVSLALDGARVGLMDADVYGPNVPIMLGVSDARPEVEGNR
                     LVPIEAYGVKLMSMAFLQP"
     gene            606..>1019
                     /locus_tag="VIJ87_04920"
     CDS             606..>1019
                     /locus_tag="VIJ87_04920"
                     /inference="COORDINATES: protein motif:HMM:NF013738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein"
                     /protein_id="HEY5443810.1"
                     /translation="MQDKFKDHFLNPRNVGDAREPSFMGRAGSFVCGAAARLSIQIDE
                     SHNISEAKFKTAGCEVLVATLSMLTERVKGMSTADAAGIGQVPEDLLAELELGSENRH
                     CVQLACDSLIAAIREYSDAARSEWNGDEALICTCFF"
BASE COUNT          231 a          267 c          276 g          245 t
ORIGIN      
        1 ccggttgcag aaatgccatc gacatcaact tcacgccgta ggcttcaatc ggtacgagtc
       61 gattcccttc gacttccggc ctggcatcgc ttacgccaag catgattgga acgtttggac
      121 cgtaaacgtc cgcgtccatc aaacccacgc gagcaccatc cagcgcgagc gagacggcga
      181 gattcacggc gactgtcgac ttaccgacac cgcctttgcc tgacgaaaca gcgacaatgt
      241 ttttgacgcc ctcgatcacg actttctcac cgagaccacg tcctttgggc acttccgcat
      301 ccatggtcac attcaccgac gtcactccgg aaagactgcc gacaaattcg cgagcggcgc
      361 tttccatttc tgccttaaca gggcaagctg gcgtcgtcag aacgatgcga aaagaaacgt
      421 ttccaccgtc aatcttcagg tctttgatga agcctagcgt gacgatatct ttgtggagat
      481 ccgggtcttt gatctggcgc agtgcatcga gtactacttg ttcgttaagt tctgtcatag
      541 ggttcttatt tagctggaat ttattggatg gagcgtagct gatcgagtga gtctttgaca
      601 aacacatgca ggacaaattc aaagaccact ttctgaatcc gcgaaatgtg ggcgatgcgc
      661 gcgagccgag cttcatggga cgcgcggggt cattcgtgtg tggcgccgcg gctcgtttgt
      721 ctattcagat cgatgagtcg cacaatatct ccgaagcaaa gtttaagact gcaggttgtg
      781 aagtgctcgt tgccaccctt tccatgttga ccgaaagagt gaagggaatg tcgacggccg
      841 acgccgctgg aattggacag gttccggaag acctgttagc ggaactcgaa ttgggttcgg
      901 agaaccgaca ttgtgttcag ctcgcatgtg attctctgat agcggcgatt cgagaataca
      961 gcgacgcggc tcgcagtgag tggaacgggg atgaggcact gatttgcacc tgcttcttc
//
LOCUS       DATCGC010000516         1047 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_373374, whole genome shotgun sequence.
ACCESSION   DATCGC010000516 DATCGC010000000
VERSION     DATCGC010000516.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1047
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_373374"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..705)
                     /locus_tag="VIJ87_04925"
     CDS             complement(<1..705)
                     /locus_tag="VIJ87_04925"
                     /inference="COORDINATES: protein motif:HMM:NF018435.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HEY5443811.1"
                     /translation="MSLIAKTGSLIGLNALRNLVSDTMAIDMGSASTIIAVRGRGVVI
                     DEPSVVAVNKITGEVIAVGNEAHKMQGREARDVSVIAPLVDGVVADFERTRVMLDHFV
                     RDARSGISHFSRRAIMSVLSEVTQVEQRALLSAAEEARISRVYMIEEGQAAAIGAGVP
                     ITDEHASAVVDIGGGTTNVATIVNGSIIASRAERIGSADIDSAIMDRLRRHLGLTIGI
                     PSAEWLKLELSSAIEPK"
BASE COUNT          253 a          305 c          235 g          254 t
ORIGIN      
        1 cttcggctca atcgctgaac ttaactcaag ttttagccac tcggcagagg gaataccaat
       61 tgttagacca agatgtcgcc gcaaccgatc catgattgca ctatcaatgt cggcactacc
      121 gatccgctcg gcgcgtgaag cgatgatgga gccatttacg atcgtcgcga catttgttgt
      181 accgcctcca atatcaacta cagccgacgc atgttcatcg gtaattggaa ccccggctcc
      241 aatcgctgcg gcttgtcctt cctcgatcat atagacacga ctgattcgtg cttcttcagc
      301 ggcactcaac agggcacgtt gttctacctg tgtgacttcc gagagaacgc tcattatggc
      361 gcgacgactg aaatgtgaaa ttccactgcg agcgtcgcgg acgaaatggt cgagcatcac
      421 cctggttcgt tcgaagtccg caaccactcc gtcaacgagc ggcgcaataa cggaaacatc
      481 gcgggcttcc cggccttgca tcttgtgagc ttcattgccg acggcgataa cttcaccggt
      541 aatcttgttg accgcaacaa cagaaggctc atcgataaca acgccacgcc cacgaactgc
      601 tatgatcgtg ctggcagatc ccatatcgat cgccatcgta tccgacacga gatttcgcaa
      661 ggcgttaaga ccaatcaatg agccggtctt ggctatgagc gacataaaaa acttaaggtg
      721 aacaactacg gacgcctaca attgtccgta cttgctcacc ttctcctccc ctgaagtatt
      781 gccaatttcc gatttgaatg tccgataagc tttagcttgt cgctgagtgt cgaagctagc
      841 tactcaatca gtcgacgaca agctaaagct tattggacat tcagaattac cacgctccgc
      901 tggcgcgctg ccaatcaacc tcccagagcg caaccggctg ctgtcgattc ttgacgctga
      961 tcgcgtcacg tgcttccaac ttgtaccgac tattcgccgc ctttgcagtg acatcactga
     1021 tcaatatttc accaccttta gcgtttg
//
LOCUS       DATCGC010000517         3013 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_75735, whole genome shotgun sequence.
ACCESSION   DATCGC010000517 DATCGC010000000
VERSION     DATCGC010000517.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3013)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3013)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3013
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75735"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1749)
                     /locus_tag="VIJ87_04930"
     CDS             complement(<1..1749)
                     /locus_tag="VIJ87_04930"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEY5443812.1"
                     /translation="MPDKSNKPNSGAQNPIPEFIAHYRILQRLGKGGMGEVFLGEDTK
                     QHNRKVALKVLPPDLLKEERRLRRFRQEARAVLALNHPNILTIYEIGESPDSQYIATE
                     YIEGETLRNHLWRQPLTIDEVLGVGIQVAMALEAAHAAGIVHRDIKPENIMLREDRFV
                     RDRFVKVLDFGLAKLTEPDTLGADPEALTIPITETSPGAVIGTSGYMSPEQAEGENID
                     SRSDIFSLGVVLYEMVAHEPPFKGRTESHTRVSILDHEPAPLLQHVAEVPRQLERIVS
                     KALAKDRSKRYQTVTDLKLDLEQLRDELRLSLSESGLSEKVPERGPTETVTIDTLPTH
                     NRGTIETTPEAVPVSASIAEPKGLVSKSTAVVFGIGLLTVLLVIGFMYWRSSPAPISS
                     VAILPFTNESNDPNADYLSDGITESITNSLSQLPELKVMSRNAAFRFKNSKQDPQEVG
                     RSLNVGAVLSGRLVKLGDQVVIKTELIKVADGSQIWGDEYKSNVADILSVQDEVSRKI
                     SESLRIRLTGEDEKNLAKRYSSDAEAYQLYLKGRYYWNKRNEEGFRNSIDYFKRAEER
                     DPSFALAFSGLADSYAL"
     gene            2053..2988
                     /locus_tag="VIJ87_04935"
     CDS             2053..2988
                     /locus_tag="VIJ87_04935"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY5443813.1"
                     /translation="MSAQKPKPSPSPTPNEDTQGSIITNIRRVRLPITVVDKKGAFVP
                     GLTKEDFIILEDKVPQQIETFSDEISQNMPLFVGVLIDTSASTAGKLKFQQESAMNFI
                     QTVIKPRKDRVLYGTFDDEVKLRQDFTNQLDLLDRAVSATKQTGTHTSLYDAVWQFCD
                     EKMRSAPGRRVLVLVTDGGDTFSRATLRDAIDIAQRTETTIFTISTKAGFLSTVPGVE
                     AGQVSNADDRVLQNIAEETGGIAFFTGDMLSLERSFTRISKELRAQYLVTYNPTNKSY
                     DGTFRKIDVKLGDGHNDLKVRTKRGYKAIADSVAQ"
BASE COUNT          716 a          768 c          759 g          770 t
ORIGIN      
        1 tagggcgtat gaatccgcga gtcctgaaaa ggctaacgcg aatgatggat ctcgttcctc
       61 ggcgcgcttg aagtagtcga tactattgcg aaaaccttct tcattgcgct tgttccagta
      121 ataacggcct ttgagataga gttggtaggc ttccgcgtcg ctgctatatc gtttcgcgag
      181 atttttctcg tcctctccgg ttaaccgaat gcgaaggctt tccgagatct tccgcgatac
      241 ttcgtcctgg accgaaagaa tgtcagccac attgcttttg tactcatcac cccaaatttg
      301 cgaaccatcc gcaaccttga tcagttcagt cttgatgact acctgatcac ctaacttgac
      361 gagtcgaccg gacaatactg caccaacgtt caaacttcga ccgacttcct gtgggtcctg
      421 cttggagttt ttaaaacgaa acgctgcgtt tcgcgacatg accttcaatt cgggcaattg
      481 cgaaagactg ttcgtgatgc tctctgtgat tccgtcagac aggtaatcgg cgtttggatc
      541 gttgctctcg tttgtaaacg gtagaatcgc gaccgaacta atcggtgcgg gtgaagagcg
      601 ccagtacata aaccctataa ccagcaggac cgtcaacagg cctattccaa acaccacggc
      661 tgtgctctta cttactaagc ccttcggctc tgcgattgac gcgctgacgg gtaccgcttc
      721 cggcgttgtt tcgatcgttc cgcgattatg agtcggcagt gtatcgattg ttaccgtctc
      781 agtaggacct cgctcaggta ctttttcaga taagccactt tcagataagg aaagtcgcag
      841 ctcatctctg agttgttcta aatcgagttt tagatcggtg acagtctgat agcgtttcga
      901 tcgatccttc gcgagagctt ttgaaactat gcgctcgagc tgtcgcggaa cctcggctac
      961 gtgttgaagc agcggcgccg gttcgtgatc aagaattgat acgcgtgtgt ggctttccgt
     1021 gcgtcccttg aacggaggtt cgtgcgcaac catctcataa agaacgacac ccaaactaaa
     1081 gatgtcggag cgcgagtcga tattctcacc ctcggcttgt tcaggagaca tataaccgct
     1141 ggttccaatc acggctcccg gactcgtctc tgttattgga atcgtaagcg cttcaggatc
     1201 ggcgcccagc gtgtcgggct cggtgagttt tgccagacca aaatccaaaa cctttacaaa
     1261 gcgatctcgc acaaagcgat cttcccgcaa catgatgttc tcgggtttga tatcacgatg
     1321 aacgattcct gcagcgtgtg ctgcctcgag cgccatagct acttgaatgc cgacgccgag
     1381 tacttcatca attgtgagag gttgccgcca gagatgattt cttagagtct cgccctcgat
     1441 gtactcagtc gcgatgtact ggctatcggg cgactcgcca atctcgtaga tcgtcagaat
     1501 gtttgggtgg ttgagtgcca ggaccgcgcg agcttcctgt ctgaatctgc ggagtcgtcg
     1561 ctcctctttc aggaggtccg gcggcagcac tttcagggca actttgcgat tatgttgttt
     1621 ggtgtcctca ccaaggaata cttcacccat cccgcccttg cccagtctct gcaagatgcg
     1681 ataatgggca atgaattcag gaatcggatt ctgtgcgcct gagttgggtt tatttgattt
     1741 gtcgggcatt atttgcgcga cgagtcaggc caggtcgggt tccaacgcat tgtaacaccc
     1801 gccccgaaaa ttgaaccatg tgacgtccag ggcgacatgg tttgactaaa ttctcctgca
     1861 ttataaatcg gcaactagca gccaccatca gaaagggcaa caggtttgca cttgaaagca
     1921 tcgaaacgcc ggcatccgac agactccaga gatcgcctga actataatcc agaccctatg
     1981 tcatctcgtt tagtaagtca tttattctgt aaattgtcgc tcgctactct tttggcggtt
     2041 gcggcagtta gtgtgagcgc gcaaaaaccg aaaccttcac ccagcccgac accaaacgag
     2101 gatacgcagg gttccatcat caccaatatt cgtcgcgttc gtcttccgat cactgtcgtc
     2161 gacaagaagg gtgcttttgt acccgggttg accaaagaag acttcatcat tctcgaggat
     2221 aaagttccac aacagatcga aacattttct gacgagatat cgcagaacat gcctctcttt
     2281 gtcggggtct tgatcgatac ctcagcgtcg actgcaggta agttgaagtt tcaacaagag
     2341 tcggcaatga actttattca aactgtaatt aagcctcgta aggatcgagt tctatacggc
     2401 acgtttgatg atgaagttaa gttgcgtcag gacttcacca accaattaga tcttttggat
     2461 cgggcagtgt ctgcgacaaa acagaccgga acgcacacat cgctctacga tgcggtctgg
     2521 cagttttgcg atgagaagat gagatcagcg ccgggtagac gcgtgctcgt tttggtaacg
     2581 gacggcggcg atactttcag tcgagccact ttgcgcgacg ccatcgacat tgcgcaaagg
     2641 acggaaacca caatcttcac catttcaacg aaggctggct tccttagcac tgtgcctggc
     2701 gtcgaagccg gccaggtctc taatgcagat gatcgagtgt tgcaaaatat tgctgaagaa
     2761 acgggcggca ttgcattttt caccggcgac atgctttcgc tcgagcgatc gtttacgagg
     2821 atctcgaaag agttacgcgc gcagtatctc gtcacttaca atccgacgaa caagagttac
     2881 gatggcacgt ttcgtaagat cgacgtgaag cttggagatg gccacaacga tctgaaagtg
     2941 cgaaccaagc gcgggtacaa agccatcgct gacagcgttg cgcagtgagg agttctgagg
     3001 taaagatgca ata
//
LOCUS       DATCGC010000518         1017 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_175177, whole genome shotgun sequence.
ACCESSION   DATCGC010000518 DATCGC010000000
VERSION     DATCGC010000518.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1017)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1017)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1017
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175177"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..245
                     /locus_tag="VIJ87_04940"
     CDS             <1..245
                     /locus_tag="VIJ87_04940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443814.1"
                     /translation="SLGLDPIDEDEFAYEFRLQTVQRCLKAVGTFSFQSVNRGKSYFI
                     PYIKPMFEIVLRALTELQQFPVLRSVVEQQLKVADF"
     gene            complement(274..>1017)
                     /locus_tag="VIJ87_04945"
     CDS             complement(274..>1017)
                     /locus_tag="VIJ87_04945"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY5443815.1"
                     /translation="KGVSFDAPAGATTALVGSSGSGKSTILSLVLNFIQPTKGTVTVD
                     GLDLQTVRLRDYRSHLGVVLQDNFLFDGTILDNIRFANPHANLEKIKEMCRIANADEF
                     IEKFPTGYETVVGERGVKLSGGQRQRIAIARALLADPRILILDEATSSLDSESEALIQ
                     EGLRRLRQGRTTFVIAHRLSTIRSADQILVVESGQMVERGTHAELIEIAGRYKQLYDK
                     QYLFEQNLFVNPGEELKSKPGEVMSQTKL"
BASE COUNT          237 a          254 c          233 g          293 t
ORIGIN      
        1 tctcactcgg tctggatccc atcgatgagg atgagtttgc ctacgaattt cggctgcaga
       61 ccgtccagcg atgtctcaag gctgttggta cgttttcatt tcagtcagtg aaccggggga
      121 agtcgtattt cattccttac atcaaaccaa tgtttgagat cgtgttgcgc gctttgaccg
      181 aactccaaca gtttccagtt ctcagatctg ttgttgaaca acaactaaaa gtggcggatt
      241 tctaagttaa gtatccctcc attttgtcga accctacaat ttagtctgcg acattacctc
      301 gccaggtttg cttttgagtt cttcacccgg atttacgaat aggttttgtt caaataaata
      361 ttgcttgtcg taaagctgct tataacgccc ggcaatttca atcagttctg cgtgtgttcc
      421 tcgctcgacc atctgtccgg attcaacgac caatatttga tcggcgcttc tgattgtcga
      481 caagcggtga gctatgacaa atgtagtgcg accttggcgc agcctgcgca atccctcttg
      541 tatgagcgct tcagactcac tatcgagact agaggtcgct tcatccagga taagtattct
      601 tggatccgcc aacagtgctc gggcaatggc gatccgctgt cgctgtccgc cggaaagttt
      661 tacccctcgc tcaccgacca cagtttcata tcctgtcggg aacttttcga tgaactcgtc
      721 ggcatttgca attcgacaca tctctttgat cttttcaaga tttgcatgcg gattggcaaa
      781 acgaatgtta tcgagaatgg ttccgtcgaa aagaaaattg tcctgcaaaa cgacgcctag
      841 atgcgaccga taatccctga gccgaacggt ttgcaagtcg agtccgtcca cagtaacagt
      901 tccttttgtc ggttgaatga agttaaggac gaggctcaga atggtagatt taccgctgcc
      961 tgatgaccca acaagcgctg ttgtggctcc ggcaggtgca tcgaaactta ctccctt
//
LOCUS       DATCGC010000519         1193 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_107284, whole genome shotgun sequence.
ACCESSION   DATCGC010000519 DATCGC010000000
VERSION     DATCGC010000519.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1193)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1193)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1193
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107284"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(208..594)
                     /locus_tag="VIJ87_04950"
     CDS             complement(208..594)
                     /locus_tag="VIJ87_04950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443816.1"
                     /translation="MVTLQLGKAIARSVDLADFGFGELSPVAQHIAIKGLENVVKDTH
                     AGITKKDNPNDYQELSEAAVDKKLAALRAGDLRTIATRIDVAAAVKSAITKLTFEEFM
                     ASKTPDEQAAFMAQMAAMSEPKKKKA"
BASE COUNT          267 a          321 c          309 g          296 t
ORIGIN      
        1 ttcgagtctg tggtatggct ggataaacgg tttatgtaac catctctaag actccgacaa
       61 tcaccgcagc ctctctgagt acccaggagc aagctaagca gcgcagcctc tctgaactgc
      121 cagctctcag tcagctgaga gcaaaataaa aaactctgag taaataaaaa agagaaaaaa
      181 atggggggct tgcgcccccc actctcgtta ggccttcttc ttcttcggct cgctcatcgc
      241 ggccatctgg gccatgaacg ctgcctgctc gtctggggtc ttcgaggcca tgaactcctc
      301 gaaggtcagc ttcgtgatgg cggacttgac tgcggccgca acgtcgatcc gagtcgcgat
      361 ggtccgcaag tcaccggcgc gcagtgccgc cagcttcttg tcgactgcgg cctcggacaa
      421 ttcctgatag tcgttgggat tgtccttctt cgtgatcccg gcatgggtgt ccttgaccac
      481 gttctcgagt cccttgatcg cgatgtgctg tgcgactggg gacaattccc cgaagccgaa
      541 atcggccaag tcaacagaac gcgcgatcgc cttaccaagt tgaagagtaa ccattgtagt
      601 ctccttcata acccggactt ggcgggttcg tcgaaccccg tcccatctcc ggtatacaca
      661 cagtactcga tcccacggga atgtaaagtt cgttgtttga tgagttttag caactaaagt
      721 tcgttggtcg gtcgagtttt gtaatttaat tgctcgaata ggacaacagt ctcggacgta
      781 ggactacagg cccatatgct tttagtccta ggcctgcatc cctaggactg cagtctctgc
      841 aactgggagt tggtgatagc tatgcgccac gagcatacct atgactcgag tcctatgaga
      901 ctgcattcct acaactcagg gtaggggtgc cccgacgaag caacttggca cagtttttgc
      961 aagccttcag aatatcgctc gagtgttttc tgacatacct cactatcact gccttactgt
     1021 ccagcaactg agaggtacac taaaaaagat ccaaggggct tgacacgcct cggagagagg
     1081 cgtaaactgc gaacaatggg agggcttcgt gagtcttgtt cggccttcga tcgagcgtcc
     1141 tatttgtcgt gtgatacttg tgtgcgggcc tccggcttca ggtaaatcga ctt
//
LOCUS       DATCGC010000520         2147 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_273544, whole genome shotgun sequence.
ACCESSION   DATCGC010000520 DATCGC010000000
VERSION     DATCGC010000520.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2147
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_273544"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2147
                     /locus_tag="VIJ87_04955"
     rRNA            <1..>2147
                     /locus_tag="VIJ87_04955"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          555 a          505 c          672 g          415 t
ORIGIN      
        1 ctgaaaccac atgtctacaa gcagttcgag gactacgggg caacccagtc cgagagcgta
       61 ccttttgcat catgattcgg cgacttaatg tacgtagcga ggctaagccg ttaggtggag
      121 ccggagcgaa agcgagtccg aaatgggcgc tacagttgcg tgcattataa cccgaagcgg
      181 ggtgatctac acttggccag gatgaagcgt gggtaaaacc acgtggaggt ccgaactcgt
      241 gagagttgaa aatctctggg atgagctgag tgtaggggtg aaaggccaat caaactccgt
      301 gatagctggt tctccccgaa agatatttag gtatcgtctc gaggaattca ataccggagg
      361 tagagcactg gaacggctag gggtctcacc agattaccaa accgtaccaa actccgaatg
      421 ccggaaactg ttatctcggg aagcagtcag tgggtgataa cgtccattgg caagagggga
      481 ataacccaga ccgacagcta aggtccccaa gtccagtcta agtgaacact agaaaggatg
      541 tggcaggtca ttgacaacca ggaggttggc ttagaagcag ccatccttta aagaaagcgt
      601 aatagctcac tggtcaagac aggccgcgcc gaaaatgtaa cggggctcaa gactggcacc
      661 gaagcttcgg atcgtgcgcg gatagagccg tgcacggtgg taggggagcg tcccaactgc
      721 tgcgaagcat gaccgcaagg gcatgtggag cggttggaag tgctgatgcc gaaatgagta
      781 gcgataaagg gggtgagaaa ccccctcgcc gtaaacccaa ggtttcctgg gccaggttca
      841 tcctcccagg gttagccgga tcctaagtcg aggccgaaag gcgtagatga tggggagcag
      901 gttaatattc ctgcgccatc tttgtagcgt tgaactgagg gacgacgaag aaggttagac
      961 gagccgggtg gtggatgtcc cggtctagcg ccgtaggggt gccacgtacg atcaaaaggc
     1021 gtggcagcta tctccgaggg cgaaagggag cgcctcgcgc gaactcgtcg ataccacgct
     1081 tccaagaaaa atcccgcagg gagctgcaag ggtgtccgta ccgcaaaccg acacaggtgg
     1141 gtgaggagaa aatcctaagg cgcctgagag aactctcctc caaggaacta ggcaaattga
     1201 caccgtaact tcggaagaag gtgtgccctc ggtaggtgaa cccgtacagg gggagccgag
     1261 gagggttgca atgaaacggc ggtagcgact gtttaccaaa aacacaggac tctgcgaagg
     1321 cgagaagccg acgtataggg tctgactcct gcccggtgct ggaaggttaa ggggattcgt
     1381 cagccgcaag gtgaagcgat gatccgaagc cccagtaaac ggcggccgta actataacgg
     1441 tcctaaggta gcgaaattcc ttgtcgggta agttccgacc tgcacgaatg gagtaacgac
     1501 ttccgcactg tctcggagag ggactcagcg aaattgaaat agctgtgccg atgcagttta
     1561 cccgcagcaa gacggaaaga ccccgtgaac ctttactaca acttgacagt gacactaggg
     1621 ttcgactgtg taggataggt gggagactgt gaaaccctca cgccagtggg ggtggagtca
     1681 acgttgaaat accactctgg tcgtattaga tgtctaacct aggcccatga tctgggccag
     1741 ggacagtgcc tgatgggtag tttaactggg gcggttgcct cctaaaatgt aacggaggcg
     1801 ctcaaaggtt ccctcagcct ggttggcaat caggtgacga gtgtaagtgc acaagggagc
     1861 ttgactgtga gacagacatg tcgagcagat acgaaagtag gtctaagtga tccggtggtt
     1921 ccgtatggaa gggccatcgc tcaacggata aaaggtactc cggggataac aggctgatct
     1981 tgcccaagag tccatatcga cggcaaggtt tggcacctcg atgtcggctc gtcgcatcct
     2041 ggggctggag taggtcccaa gggttgggct gttcgcccat taaagtggca cgcgagctgg
     2101 gtttagaacg tcgtgagaca gttcggtccc tatccgccgc gcgcgca
//
LOCUS       DATCGC010000521         1680 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_140585, whole genome shotgun sequence.
ACCESSION   DATCGC010000521 DATCGC010000000
VERSION     DATCGC010000521.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1680
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140585"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1179
                     /locus_tag="VIJ87_04960"
     CDS             <1..1179
                     /locus_tag="VIJ87_04960"
                     /inference="COORDINATES: protein motif:HMM:NF013384.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low specificity L-threonine aldolase"
                     /protein_id="HEY5443817.1"
                     /translation="DGPRQRALLDSRATAPGSSTGLQHRATTAPDSSTNDPSPKTAKR
                     IMTKPDSPRRSFASDNNAGVHPEMIDAIKAANEGHVVAYGDDPFTERAVRTFQKHFGR
                     DTAVYFVFGGTGANVLGLQAVTKSYQAIICAETAHINVDECGAPEKFSGSKLLSVKTP
                     DGKLRVELIEHFLHGVGFEHHVQPGVISVSQATEMGTVYSKSELKTLAAFAHKNNMLF
                     HVDGARIANAAVSLNASLKEMTVDCGVDVMSFGGAKNGMMYGEAVVFFDKKRAADFKY
                     IRKQGMHLPSKMRFISAQFDALLSGDLWKRSATHSNRMAKLLAGELEKLPHLKLTQPV
                     ESNGVFVTIPKKFIPALQKKYFFYVWNEEISEVRLMASFDTTEEDIREFVNLVKKTVK
                     "
     gene            complement(1206..>1680)
                     /locus_tag="VIJ87_04965"
     CDS             complement(1206..>1680)
                     /locus_tag="VIJ87_04965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443818.1"
                     /translation="MWSRFVTQIRARRGGFRVYTLRQSDIGSDVVFKDAGDIVKFLPR
                     AAVIGFFAPFPKMWVESGTGGRMGRLLSGLETFVMYLLYFPAGFCLWKGRRNLALWLM
                     FLSIFIGLVALGLVVVNAGALYRFRYILWIFTIAMAADGLVRIWDQRSKGVKASD"
BASE COUNT          457 a          444 c          416 g          363 t
ORIGIN      
        1 gatggacctc gtcagcgagc cctccttgac agtcgggcta ctgcaccggg ctccagcacc
       61 gggctccagc accgggctac tactgcaccg gactccagca ccaatgaccc aagtcccaag
      121 accgcaaagc gcatcatgac aaaacctgat tcaccccgtc gcagcttcgc cagcgataac
      181 aacgccggcg tgcatcccga aatgatcgac gccatcaaag cggcgaacga gggacacgtc
      241 gttgcttatg gcgatgatcc gttcactgag cgagccgtga gaacgtttca gaaacacttt
      301 ggacgcgaca cggcggtcta ttttgttttt ggcggaacgg gagccaacgt gctcgggctt
      361 caggcagtca ccaagtctta tcaagcaata atttgtgccg agaccgcaca catcaacgtt
      421 gacgagtgtg gcgcgccgga gaaattttct ggtagcaaac tcctatcagt gaagactcca
      481 gacggaaaac tcagagtcga actcatcgaa cacttcctac atggagttgg ctttgaacat
      541 cacgtgcaac ccggagtcat ctcagtttcg caagcaacag agatgggcac tgtctattca
      601 aagagcgaac tgaagaccct ggctgcgttt gcgcacaaga acaacatgct gtttcacgtt
      661 gacggagcgc gaatcgcaaa tgccgcagtc agtctgaatg ctagtctgaa agagatgact
      721 gttgactgcg gagtcgacgt aatgtcgttc ggcggcgcaa agaacgggat gatgtacggc
      781 gaagcagttg tgttcttcga caaaaaacgc gctgccgatt tcaaatatat tcgaaagcag
      841 ggaatgcatc tgccgtcaaa aatgcgtttc atctcggcgc agtttgatgc gctgctatct
      901 ggtgatcttt ggaaacgaag tgcgactcac tcgaatcgaa tggcaaaatt gttggccggt
      961 gagttggaga agctgcctca cttgaaactg acgcagccgg tcgaatcgaa tggcgtcttc
     1021 gtaaccatcc cgaagaagtt tattcctgca cttcagaaga agtatttctt ttacgtttgg
     1081 aacgaagaaa tttcagaagt cagacttatg gcgtcgttcg ataccacgga agaagatatt
     1141 cgcgagtttg taaatttggt taagaagact gtgaagtaga tctttggatt tcgatcttgg
     1201 gacgactagt cggaagcctt aacgcccttg cttctctgat cccagattct caccagtcca
     1261 tcggccgcca tcgcgatcgt gaagatccat aagatgtagc gaaaccggta gagcgccccg
     1321 gcatttacta caaccaatcc caaagccacc agaccgataa agattgaaag aaacatcaac
     1381 cataatgcga ggttgcgtct gcctttccat aaacaaaagc cggcaggaaa atagagcagg
     1441 tacattacaa acgtttcgag accgctgagt aatctcccca tccttccgcc agttccggac
     1501 tcaacccaca tcttcggaaa cggagcgaaa aatccaatca cggccgcgcg cggcaagaat
     1561 ttcactatat cgccagcgtc tttgaagact acgtcactac caatatccga ctgtcgtaag
     1621 gtatagaccc ggaatccccc gcggcgcgcc ctaatttggg tcacgaaacg agaccacata
//
LOCUS       DATCGC010000522         1722 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_309024, whole genome shotgun sequence.
ACCESSION   DATCGC010000522 DATCGC010000000
VERSION     DATCGC010000522.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1722)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1722)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1722
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309024"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            132..1121
                     /locus_tag="VIJ87_04970"
     CDS             132..1121
                     /locus_tag="VIJ87_04970"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEY5443819.1"
                     /translation="MKKRKLGKSNLEVSAIGLGCMGMSSGYGPAKDKQEMISLIRAAF
                     EQGVTFFDTAEMYGPFTNEELAGEALAPFREKVVIATKFGFKIGPKDEQIGLDSRPEH
                     IKEVVDASLKRLRTDVIDLFYQHRVDPNVPIEDVAQAIKDLIQEGKVKHFGLSEPGVQ
                     TIRRAHAVQPVTAVQNEYSLWWRKPEEEVLPTLEELGIGFVPFSPLGRGFLTGRMNEN
                     TTFDSSDLRSTLPRFTPEARKANQALVDLLGEIAKRKKATPAQIALAWLLAQKPWIIP
                     IPGTTKLKRLEENIGAVEIELTPDDLREIETASSEIKVEGARYPEKLEAMTGR"
     gene            1184..1666
                     /locus_tag="VIJ87_04975"
     CDS             1184..1666
                     /locus_tag="VIJ87_04975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443820.1"
                     /translation="MKMLIQRLVIFSAIVVAFLSARQLDAADSEVSGVFKGNDQPAKM
                     AFVSAQKGTAIAGKETIKLVFTEKDHAKDQQADLKALFGDYGSALVIGIQPDGKVVTC
                     DIAHEALKQKPISSPSSVKMSDFKNEAGQISGKLVTDGKQEAFGQTWEVDLIFKTKAP
                     "
BASE COUNT          466 a          406 c          499 g          351 t
ORIGIN      
        1 catatcgcca ttcaggaagc gctgaacggc aagccggtgg attggatgga aaaagttagc
       61 gacgaacaat atggagcgaa gtaagaaggc agaagtaaga tttaagaagt tctaatcgga
      121 caatttcaaa catgaagaag cgcaaacttg gtaagagtaa cctggaagtc tcggccattg
      181 ggctgggctg catgggaatg agctctggct acggtccggc caaggacaag caggagatga
      241 tttcgctgat tcgagcggca tttgaacaag gtgtgacgtt tttcgatacc gctgaaatgt
      301 acggtccgtt cacgaacgaa gaactcgcag gcgaagcgct cgctcctttc cgtgaaaaag
      361 tagtgatcgc taccaagttc ggtttcaaaa ttggtcccaa agatgagcag atcggcctgg
      421 atagccggcc ggagcatatc aaggaagtcg tcgacgcttc actgaagcga ctcaggaccg
      481 atgttatcga tctgttctat cagcatcgcg tcgatcccaa cgtgccaatc gaagacgtgg
      541 cgcaagcgat aaaggacctg attcaggaag gcaaggtgaa gcacttcgga ctttctgagc
      601 cgggagtgca gacgattcgt cgcgcacatg cagttcagcc agttacagca gtccagaacg
      661 aatactcgtt gtggtggaga aagcctgaag aggaggtgct gccaacactg gaagaacttg
      721 gaatcggttt cgttccattc agccctctcg gcagaggctt tctcacgggc aggatgaacg
      781 agaacactac gttcgacagt tcggacttgc gtagcacgct ccctcgcttt acgccggagg
      841 ctcgaaaagc gaatcaggcg ttggttgatc tgcttggcga gatcgcaaaa cggaagaagg
      901 cgacacctgc tcaaatcgcg cttgcctggc tgctcgcgca gaaaccgtgg attattccga
      961 tccccggcac cacgaaactg aagcgactgg aggagaatat aggagcagtc gaaatcgaac
     1021 ttacgccaga cgatctccgc gaaatcgaaa ccgcctcatc agagatcaaa gtggaaggtg
     1081 ctcgatatcc cgagaagctg gaagcgatga ccggccgttg agcgcggcac gacattggcc
     1141 tcgcagcggg aatgagccag tgtcctgatt cgttggagtg cggatgaaga tgttgatcca
     1201 acgattggtc attttttccg ctatcgtcgt cgctttcctg agcgcgcgac aactagacgc
     1261 ggccgattcg gaagtaagcg gtgttttcaa gggaaacgat cagccggcga agatggcttt
     1321 tgtttcggcg caaaaaggca cggcgatcgc gggcaaggaa acgatcaaac tcgtgtttac
     1381 cgaaaaagat catgccaaag accaacaggc cgatttgaag gcattgttcg gcgattatgg
     1441 tagcgctctg gtcattggaa tccagccgga tggaaaggtg gtgacctgcg acatcgcgca
     1501 cgaagcactc aaacagaaac caatcagttc accttcgtca gtcaagatga gcgacttcaa
     1561 gaacgaagcc ggtcagattt caggaaagct cgtaacggac ggaaaacaag aagcgttcgg
     1621 ccaaacctgg gaagtggatc ttattttcaa gacgaaggcg ccgtagctta ctggtcacaa
     1681 gacgggagtc gcggccggtt tatttttcga gttgatagac gc
//
LOCUS       DATCGC010000523         2271 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_340125, whole genome shotgun sequence.
ACCESSION   DATCGC010000523 DATCGC010000000
VERSION     DATCGC010000523.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2271)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2271)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2271
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_340125"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..263
                     /locus_tag="VIJ87_04980"
     CDS             <1..263
                     /locus_tag="VIJ87_04980"
                     /inference="COORDINATES: protein motif:HMM:NF017015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY5443821.1"
                     /translation="KEVLEAFDANVAKAREALAGVTDETIFGNWSLLAGGNQLFAMPR
                     IAVLRSFVMNHIIHHRAQLGVYLRLNDIPVPSIYGPSADEQM"
     gene            complement(269..1153)
                     /locus_tag="VIJ87_04985"
     CDS             complement(269..1153)
                     /locus_tag="VIJ87_04985"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY5443822.1"
                     /translation="MNRKRLLAFLCLLIGSVAHAQQPSTIPAQRADVPLRIIDVHTHA
                     SFSDAIQRGRGIPQTEAQYFKEWQEAGVVGAVAHTSQTGGSSFNLKNRNVIYCAGIGL
                     ETKLNEIEAGLQAKKYGCIKIYLGYVHRYAYDAVYAPFYKLAEKYDVAVVFHTGDTDS
                     TKAKLKYADPLTIDEVAVDHPKVRFVIAHCGNPWIESAAEVAYKNPNVFLECSAMLTG
                     NLDEMPKEKVETYVVKPIAWIFGYVEDPTKLMFGTDWPLTGIKGYVDAYKHAIPREHW
                     NAVFHDNAVRVFKFPQQP"
     gene            complement(1162..>2271)
                     /locus_tag="VIJ87_04990"
     CDS             complement(1162..>2271)
                     /locus_tag="VIJ87_04990"
                     /inference="COORDINATES: protein motif:HMM:NF014523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HEY5443823.1"
                     /translation="LRVGIFVLAAIAILIFLVLNASGDINPFSKKLHLKARFGDANGL
                     REGSEVRLAGVRVGKVEKIALLAPSDVPSAPRVEATMTIDSTIDGQPASQRIRSDSTA
                     QQGSPSLLGNEMLINITPGTAVGSPVQEGAILPSSSSNTVNDFATSGTDLAQRLSKLS
                     DEISGIVKDVKDGKGTVGRLFSDEALYNNLNATIRETEDVMKQVRSGDGSAGRFLNDP
                     ALYNNANDIALQLKAISADLRAGRGTAGKLLTDDELYTRINRTADRLDKSVEQINGIV
                     AEINAGHGTMGKLIKDEQLYNDARAAIAKFNTTADRIDNMVAAAQRGEGTLGKLLTDD
                     TLYTNVNQLSSEGVKLIYDFRQNPKKYLTIKFELF"
BASE COUNT          485 a          571 c          619 g          596 t
ORIGIN      
        1 aaaaagaagt gctcgaggct tttgatgcga atgtcgcaaa agcgcgcgag gcgttggctg
       61 gagtcactga cgaaacaatt tttgggaatt ggtcgttgct ggctggcggt aatcaacttt
      121 ttgcaatgcc acgaattgcc gtgttgcgca gctttgtgat gaatcacatc attcatcatc
      181 gggcacagct cggagtttac cttcggctta acgatattcc agttccgtcg atctatggac
      241 cttcggcaga tgaacagatg tgagtgagct aaggttgttg agggaactta aagacgcgca
      301 ctgcgttgtc gtgaaaaacc gcattccagt gttccctcgg gatcgcgtgt ttgtacgcat
      361 caacgtaacc cttgatgccg gttagcggcc aatcagttcc aaacattaac ttggtggggt
      421 cttcgacgta gccgaatatc caggcgatgg gcttgactac gtaagtctcc accttttcct
      481 ttggcatctc gtcgaggttg cccgttagca tcgcggaaca ttccaggaag acatttggat
      541 tcttataggc gacctcggcc gctgattcga tccagggatt gccgcagtga gcaataacaa
      601 acctgacctt cgggtgatcg actgccacct cgtcgatggt caaggggtcc gcgtatttga
      661 gcttcgcttt cgttgaatcc gtgtcgcccg tgtgaaagac gacagcgaca tcgtacttct
      721 ctgcaagttt atagaatgga gcgtaaacgg catcgtacgc ataacggtga acgtagccga
      781 gatagatctt gatacaaccg tattttttcg cctgtagccc ggcttcaatt tcattaagct
      841 tcgtttccaa gccaatgccg gcacaataaa tcacattacg gtttttgagg ttgaaggagc
      901 tgccgcctgt ttggctggta tgggccactg cacccacgac gcctgcttct tgccattctt
      961 tgaagtattg tgcctcagtt tgaggaatgc ctctgccacg ttggatcgcg tcactgaagg
     1021 aagcgtgggt atgaacatca atgattcgca gcggcacatc tgctcgctgc gccggaatcg
     1081 tcgatggctg ctgggcgtga gcgactgaac cgatgagaag acaaagaaac gcgagcaggc
     1141 gtttgcggtt catgagttcg actagaacaa ctcaaacttg atagtcagat acttcttcgg
     1201 gttctgccgg aagtcgtaga tcaatttgac gccttccgat gagagctggt tcacgttcgt
     1261 atagagcgtg tcgtccgtca gaagtttgcc aagtgtgcct tcaccacgtt gagcggcagc
     1321 gaccatattg tcgattcggt ccgccgtggt gttgaatttc gcgattgcgg cgcgggcatc
     1381 gttgtaaagc tgctcgtctt tgataagttt gcccatcgtt ccgtgcccgg cattaatctc
     1441 cgctacgatc ccgttgattt gctcgactga tttgtccaat cgatctgccg tgcgattgat
     1501 gcgcgtgtag agttcgtcat cagtcagaag tttgccggcg gtgccacgtc cggcgcgaag
     1561 atctgcagaa atggctttga gttgtaacgc aatgtcattc gcgttgttat agagcgctgg
     1621 gtcgttaaga aatcttccgg cagagccatc gcctgaacgt acctgtttca ttacgtcttc
     1681 ggtctcacgg atggtcgcgt tcaggttgtt gtagagggct tcgtcactga agagccgccc
     1741 caccgtcccc ttgccatctt tcacgtcttt tacgatgccg ctgatttcgt cggaaagttt
     1801 gctgagtcgc tgcgccaggt cagttcctga cgtggcaaag tcgttaaccg tgttcgatga
     1861 cgaagacggg agaatcgctc cctcctgaac tggagatccg actgccgttc cgggcgtaat
     1921 gtttatgagc atttcgttgc ccagcaagct cggtgatcct tgttgggcgg ttgagtccga
     1981 acgtattcgt tgactcgcgg gttgaccatc gatggtcgaa tcgatcgtca tcgttgcttc
     2041 gacacgcgga gcactcggta catccgacgg ggcgagtagc gcaatcttct caactttgcc
     2101 gacgcgtacg ccggccaaac gcacttcaga accttcgcgc aaaccgtttg cgtcgccaaa
     2161 gcgagccttc aagtgtagct tcttgctgaa agggttaatg tcgccagacg cgttgagcac
     2221 cagaaaaatg aggattgcga ttgccgccag gacaaaaatc ccgactctca a
//
LOCUS       DATCGC010000524         1515 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_207131, whole genome shotgun sequence.
ACCESSION   DATCGC010000524 DATCGC010000000
VERSION     DATCGC010000524.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1515)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1515)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1515
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207131"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..495)
                     /locus_tag="VIJ87_04995"
     CDS             complement(<1..495)
                     /locus_tag="VIJ87_04995"
                     /EC_number="3.5.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF016824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004359 - glutaminase activity [Evidence
                     IEA];
                     GO_process: GO:0006541 - glutamine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutaminase"
                     /protein_id="HEY5443824.1"
                     /translation="MMGKMQTRMLVATFVVITFVSTPLSSLGQKASPVAPTKAQVEAV
                     VREAYDKFQSNTSGKNADYIPFLAQVDSKMFGVAVVSTDNQVFSIGETNYAFSIQSIS
                     KVYTLALAMEELGADRVFDRIGSEPTGRAFNSVTAVVEMPTHTGNPLVNAGAIATTSL
                     ILGKD"
     gene            complement(545..>1515)
                     /locus_tag="VIJ87_05000"
     CDS             complement(545..>1515)
                     /locus_tag="VIJ87_05000"
                     /inference="COORDINATES: protein motif:HMM:NF039990.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DcaP family trimeric outer membrane transporter"
                     /protein_id="HEY5443825.1"
                     /translation="QTRFGVKSSTPTKYGELKTIFEFELFGTGAQAGQTIFRLRHAYG
                     EMGHFGAGQNWSVFVDPDVFPNTNEYWGPNGIPWFRNVQFRWMPIKGKNSVTIGLERP
                     GASADLGQVGDRIELQGVKARFPAPDLTGNVRFDRGWGHFQASGVLRYIKWEDNVADN
                     FDLSGSATGAGFSLNTGLNFGKNDVGKFSFTYGHGIQNYMNDAPVDVGIALTHSSNPR
                     VPIKGVALPVTAFMAYLDHKWNEHFASSVGYSMLNISNSEGQTPDAFRRGHYASGNFL
                     WYPVQNVMIGSEIIWGRRDNFLDGFSSEDVHLQFSFKYNFSKEFKF"
BASE COUNT          359 a          405 c          388 g          363 t
ORIGIN      
        1 atccttgcca aggatcagac tggtcgtagc aatggctccg gcattcacta atggattacc
       61 ggtgtgcgtt ggcatctcaa caacggcagt caccgaatta aaagctctgc ccgtcggctc
      121 gctaccgata cgatcaaaaa cccgatcggc tccgagctcc tccatggcga gggccagcgt
      181 atagactttg gaaattgatt ggatcgagaa ggcgtagttc gtctcaccga ttgagaagac
      241 ctggttgtcc gtactcacaa cggcgacccc gaacatcttt gaatccacct gcgcgagaaa
      301 tggaatgtag tccgcgttct tgccgctggt gttgctttgg aacttgtcgt aagcctcgcg
      361 cacaacggcc tcgacctgcg ctttggttgg tgcgacagga ctagccttct gacccagaga
      421 cgacagtggt gttgacacga atgtgatgac gacaaaagtc gccaccaaca ttcgtgtttg
      481 cattttcccc atcatgagtc tttctcctct ttaacgatca caaaaaatct gtagtcgtca
      541 cagttcaaaa cttgaactct ttagagaagt tgtatttgaa cgagaactgt aggtgaacgt
      601 cttcagacga gaagccgtca aggaagttgt ctcgtctacc ccagatgatc tcgctgccaa
      661 tcattacgtt ttggaccggg taccataaaa agtttcctga agcgtaatga ccgcgacgga
      721 acgcatcagg tgtctgtcct tcagagtttg agatgttcag cattgagtag ccgaccgagc
      781 tggcgaaatg ctcgttccac ttgtggtcga gataggccat aaaggcggtc accggtaacg
      841 cgacgccttt gattggaact cgcggattcg acgaatgagt taaggcgata ccgacgtcga
      901 ccggagcatc gttcatgtag ttctggatgc catggccata agtaaacgag aacttgccga
      961 cgtcattctt cccaaaattc agacctgtgt tgagactgaa gccggcgcct gtcgcgctac
     1021 cgctcaggtc gaagttgtca gcaacgttgt cctcccattt gatatatcgc agtacgccgg
     1081 aagcttggaa gtggccccaa ccgcggtcga accttacgtt cccggtgaga tcaggagccg
     1141 gaaatcttgc cttcacgccc tgtaactcga tgcggtcgcc aacttgtccc aggtctgcgc
     1201 ttgcgcccgg acgctccagg ccaatcgtta ctgaattctt tcccttaatc ggcatccagc
     1261 gaaactgaac attgcgaaac cagggaattc cgtttggccc ccagtactcg ttggtgttcg
     1321 ggaaaacatc cggatcgaca aacacactcc aattctggcc ggcgccgaag tggcccattt
     1381 ctccgtaagc atggcgcaat cggaaaattg tttggccagc ctgcgcaccg gtgccgaaga
     1441 gttcgaattc aaatatggtc ttgagctcac cgtacttggt tggagtggac gacttaacac
     1501 caaagcgagt ttgcc
//
LOCUS       DATCGC010000525         1594 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_75784, whole genome shotgun sequence.
ACCESSION   DATCGC010000525 DATCGC010000000
VERSION     DATCGC010000525.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1594)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1594)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1594
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75784"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            227..>1594
                     /locus_tag="VIJ87_05005"
     CDS             227..>1594
                     /locus_tag="VIJ87_05005"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEY5443826.1"
                     /translation="MSTQTIKDRPLVTGLNGGRSIGWLKTAGAALLAQKKKLLLGGGA
                     LAIVALAGFYFFGRDSSATQYMTVRVERGNLRNTVTATGTLQAVTTVQVGSQASGTIS
                     ALYADYNSIVKKGQVVAQLDPAVSKAQVDQARANLEQAKASLVQARAAVVNSRAGVSD
                     AKAKGQAAQSTVQNNQAGVSGAEANVAVLKAQLDDALSLLKQQESLLKSGVIAQRDYD
                     VSQTAYKTAEAKYNQAVAQLNQAKLTQQSSSSAGIAQSNAAVEQSQAQVQQSQAQVAQ
                     ASAQVQQAQAALSLAEVNLSHTTIASPIDGIVVSRDVNVGQTVAASLSAPTLFTIAND
                     LTQMQVIANIDQADIGLVEQAKSVKFSVDAFPGKDFDGKIEQMRINPQNVQNVVTYNV
                     VIDVNNPDQKLKPGMTANLTITIDDRNNVLKVPNSALRFTPQDATGQRAGSGAGGGGQ
                     RRRQQG"
BASE COUNT          424 a          420 c          410 g          340 t
ORIGIN      
        1 acagatttac gcagataaac gcagaatctg aatatgagac tgagtcccca gtcctctctt
       61 tggttttttg acctgcgttc tatcagctat tatctcggct aattatctgc ccttccccaa
      121 aatgtgtttt ttccaggccc gcgtgtaacc aaactccaga cattagtgtc tggaatagta
      181 ggcagtacgc acaacatctg atcggagagt tgataaggta aatcgcatgt cgacacaaac
      241 aattaaagac cggccgttgg taaccggcct aaatggtgga cgcagcattg gctggctgaa
      301 gactgcaggt gccgcactgc ttgcccaaaa gaagaaactg ctgttgggcg gcggagccct
      361 agctatcgtg gctctggctg gtttttattt ttttggtagg gattcatccg ctacgcaata
      421 catgactgta agggtcgaac gcggaaacct ccgcaacact gttaccgcta caggaacatt
      481 gcaggcagtc actacggtcc aggtcggcag ccaggcttcg ggaaccattt cggctctcta
      541 tgctgactac aactcgatcg tgaagaaggg ccaggtagtc gcacaattag atccagccgt
      601 gtcgaaagct caagtagatc aggctcgagc aaatcttgaa caggctaaag cgagtttagt
      661 gcaagctcgt gcggctgtcg ttaattcccg cgccggtgtc tcagacgcaa aagcaaaagg
      721 acaagcggcc cagtcaactg tacagaacaa ccaggctggc gtttcgggcg ctgaggcaaa
      781 tgtcgcagtt ttgaaggcgc aactcgacga cgctctcagt ctcctcaaac aacaggaatc
      841 gctactaaag tctggcgtca tcgcgcagag agactacgac gtgtctcaaa cggcatataa
      901 aacagccgag gcgaaataca accaggcagt ggcgcaactc aatcaagcga agttgaccca
      961 acagtcatca tcaagtgccg gcatcgcgca atccaatgcc gctgtcgagc agtcgcaagc
     1021 ccaggtccaa caatcacaag cgcaagtcgc acaggcttct gctcaagtgc aacaggcaca
     1081 agccgcgttg agtcttgccg aagtaaatct tagtcacacg actatagctt ctccgatcga
     1141 tggcatagtc gtttctcgcg acgtaaatgt tggtcagaca gttgccgcaa gtttgtcggc
     1201 gccgactctg ttcaccatcg cgaacgacct gactcagatg caagtgatag ccaacatcga
     1261 ccaggcagac atcggcctgg ttgaacaggc gaagtcagtg aagttttcag tcgatgcgtt
     1321 tcccggcaag gacttcgacg gcaagatcga acagatgcgt atcaatccgc agaacgtaca
     1381 gaacgttgtt acttataacg tagtgattga cgtcaacaat cctgatcaaa aactgaagcc
     1441 cggcatgacg gcaaacctga cgatcacgat tgatgaccgc aacaatgtct tgaaggttcc
     1501 gaactccgcg ttaaggttca ctccgcaaga tgcgactggc cagcgtgcag gctccggtgc
     1561 gggcggcggc ggtcaacgtc gacgccaaca aggt
//
LOCUS       DATCGC010000526         1523 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_440636, whole genome shotgun sequence.
ACCESSION   DATCGC010000526 DATCGC010000000
VERSION     DATCGC010000526.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1523
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_440636"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..961)
                     /locus_tag="VIJ87_05010"
     CDS             complement(<1..961)
                     /locus_tag="VIJ87_05010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443827.1"
                     /translation="MYKTKRSIIAVLIFGLIAVTAAVIPHTGRGQVLEGNGEIPLNCD
                     EQPCDSVARGRKAFNDGKLKELGGNGRSCADCHMPSDGFQLSPASARARYEALQAKLE
                     HNKNADDPLFRPVDADDFRTNGDSAIDFSNLVENGLIRVTMPLPLNVKLIDPVTGQPS
                     AETSVDLWRAVMPVLNVAITGPDNVLPIWPPGAPRPPIMGQDPNGPNRQGGYQHDARF
                     GSLQEQARGALIAHAQVSVEPPQRMLDDLAAFQQSLFSAPTVEQLADAILNGASAFPD
                     PDPELDQVEQQGKGVFNRACAQCHGGSLHPSGSTPETGFVRPIV"
     gene            1173..>1523
                     /locus_tag="VIJ87_05015"
     CDS             1173..>1523
                     /locus_tag="VIJ87_05015"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEY5443828.1"
                     /translation="MSIYDFGPFSVDAHRRLLLREGARVRLPAKAFEILLVLLEENGR
                     LVEKDELLKRVWPDVVVEENNLTVNISALRKSLEESPGEHRYVVTVPGRGYQFVAEVH
                     QHYADELSDEAELPS"
BASE COUNT          349 a          390 c          425 g          359 t
ORIGIN      
        1 gcacaatggg ccgcacaaag cctgtctccg gcgttgagcc actgggatgc aggctgccgc
       61 cgtgacattg cgcgcatgct cggttgaaaa ccccttttcc ctgttgctcg acctgatcaa
      121 gttccggatc aggatccgga aatgctgagg caccattaag aatagcgtcg gcaagttgct
      181 ctacagtagg cgctgaaaac agcgactgct gaaaggctgc gaggtcatcg agcatacgct
      241 gcggcggttc aacagacacc tgtgcatggg cgatcaacgc accgcgtgct tgttcctgaa
      301 gcgatccgaa tcgggcatcg tgttgatatc cgccctgccg gtttggccca ttaggatcct
      361 ggcccatgat tggcggtcgt ggagcgcccg gtggccagat cggcaatacg ttatccggac
      421 cggtaattgc gacgttgagt acaggcatta ccgcgcgcca gagatcgacc gacgtttctg
      481 ccgagggttg accggtaacc ggatcgatca gtttcacatt caaaggcaag ggcatcgtta
      541 cgcgaatgag accgttttca acaaggttcg agaaatcgat cgcgctatcg ccgtttgtac
      601 ggaagtcgtc ggcatccact gggcggaaga gcggatcgtc agcattcttg ttgtgctcaa
      661 gtttcgcctg cagcgcttcg tagcgagccc tcgctgatgc aggagaaagc tggaatccat
      721 cagatggcat gtggcaatct gcgcacgagc gtccgttccc accaagctct ttgagtttgc
      781 cgtcgttgaa agctttacga ccgcgagcca cagagtcaca tggttgctcg tcgcagttaa
      841 ggggtatctc gccatttccc tccaggactt ggccgcgacc tgtgtgcggg atcactgcgg
      901 cagtcacagc gattaagcca aaaatgagga cggcgatgat cgatctctta gttttgtaca
      961 tagtcttaag tctttccgaa cagaaacgtc gaggtttacg gctggcggct ttccggccag
     1021 caccttcaag tagttgatgg ttctgtgacg aacgccttct attgctcaca aattgaacgt
     1081 ggcggataat cgctcgcgaa caactgaaaa gtcctttagt tttccttaaa ccttcctaaa
     1141 ctttgctaat gtccacagcg ccaataaaac aaatgagcat ttacgatttt ggcccgttca
     1201 gtgttgatgc tcacaggcga ctcctgttgc gagaaggtgc gcgtgtgcgt ctccccgcga
     1261 aagcttttga gattctgctc gtactacttg aagagaacgg gcgacttgtc gaaaaggatg
     1321 aattgttgaa gagggtttgg cctgacgtgg tggttgaaga gaacaatctg actgtcaaca
     1381 tttcggccct cagaaaatcg cttgaagaga gcccgggcga acaccgatat gtagttaccg
     1441 ttccaggtcg gggttatcag tttgtcgcgg aagttcacca gcattacgca gatgaactga
     1501 gcgacgaagc agaactacca agt
//
LOCUS       DATCGC010000527         1122 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_406710, whole genome shotgun sequence.
ACCESSION   DATCGC010000527 DATCGC010000000
VERSION     DATCGC010000527.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1122
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_406710"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..804
                     /locus_tag="VIJ87_05020"
     CDS             <1..804
                     /locus_tag="VIJ87_05020"
                     /inference="COORDINATES: protein motif:HMM:NF012742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEY5443829.1"
                     /translation="TLFICISEHTAKEDVQAFDSLADHRADGIIVATRASKSGNERLE
                     ELIDSGIPITLIGRDFHHQHADLVHADNLKGGYEATRHLIDAGHKRIGFIGVSLTEGL
                     RLRRFQGYLEALKDHDLPVEEQLIVGGRELGEQMPGYSTEEMGYDGMMKLLELEPHPT
                     AVFARNDFTAMGALNAIKRSGLRIPDDIALVGYDDIPLASHTSPTLTTVRQPTREQGR
                     CAAEFLLRRIEGDSEQPRVEKTFQCELIIRESTSPSQEVASSSSKLKTA"
BASE COUNT          292 a          282 c          300 g          248 t
ORIGIN      
        1 acacttttta tctgtatcag tgaacacact gccaaggaag atgtgcaggc gtttgactcg
       61 ctcgccgacc accgcgccga tggaatcatc gtagccacac gtgcttcaaa gagcggcaac
      121 gaacgactgg aagaactgat cgactccggc attcccatca ctcttatcgg aagagacttt
      181 catcaccagc atgctgacct tgtgcatgcc gataatctga aaggcggtta cgaagccacc
      241 aggcatttga tcgatgctgg acacaaacgt ataggtttta ttggtgtctc gctaaccgaa
      301 ggcttgcggt tgcgtcgttt tcaaggctac ctggaagcgc taaaagatca cgatcttcca
      361 gttgaggagc agctaatagt tggcggtcgc gagcttggtg aacagatgcc gggttattca
      421 accgaggaga tgggctacga cggcatgatg aagttgcttg aactcgaacc tcacccaacc
      481 gctgtcttcg cccgaaatga tttcaccgcg atgggagcgc tcaatgccat caagcgttcg
      541 ggacttcgga ttcccgacga catcgccctg gtaggttacg acgacatccc actggcttcg
      601 cacacatcgc cgacattgac gacagtaagg caaccaactc gtgaacaggg tcgctgcgct
      661 gcggagtttt tgctgcgccg cattgaagga gacagcgagc agccgcgtgt tgagaagacg
      721 tttcaatgcg aactcataat ccgcgagtca acaagcccgt cccaggaagt cgcgtccagt
      781 agtagcaaac tcaaaacggc atagatagtg aggactcagc tcgctgagga gcttgtgtgc
      841 tctagcgaat tgaatgttag cgataacaga acgaagacgg agcgtaaacc tcctctcatt
      901 ctccccaagc tttagcttgg ggttatggtg cgctgaatct caggaaccgt tttaacggtt
      961 tacctctatg gcgcatgaat ggaggagtaa tcaaaggtcg gctaggagac ttattggctc
     1021 aactagtaaa ccgttgaaaa cggttccgga gaattaactg cggaccgtga ccccaagctg
     1081 aagcttgggg agaatgagag cttcgcaaga aattctaaag ca
//
LOCUS       DATCGC010000528         2613 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_309067, whole genome shotgun sequence.
ACCESSION   DATCGC010000528 DATCGC010000000
VERSION     DATCGC010000528.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2613)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2613)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2613
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309067"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1248
                     /locus_tag="VIJ87_05025"
     CDS             <1..1248
                     /locus_tag="VIJ87_05025"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025217.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY5443830.1"
                     /translation="IFAKADGTKTLGQILEHVDANPGDANEALEFLTTIERQLIKLTS
                     NKEDCANPFKPCNIIGRDLFHASEAESISEIDSVTEFHLRGIEDGSWEFDQIEPTINH
                     AFRFPGEVFDGLSYGARFCASALGPIEKKELDILEVGGGTGSFASSFIEESQRRGIDL
                     NYHILDLSPVLIEHQKRALAERGFEVTHFHQNATEFDLPGRTFDLIVSNEVIADFPVA
                     EVRCTRDENGEAWDGPGLQWVEKYSLETPPNTDQFLVNSGVFEFVERAWKHLHEGGRF
                     IVTEYGGENSYPVQAIQLNHEEFSIHFGHVKKCATQIGFECELVPLKNFLAANDQVSI
                     LDGRELRILCLNHILRSHDLPAMTYSAWSSYEFERQYGHAANKLNLIGLSFSPLRGGY
                     HFTPELDLFMALVMNKSRKVSGI"
     gene            1582..1956
                     /locus_tag="VIJ87_05030"
     CDS             1582..1956
                     /locus_tag="VIJ87_05030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443831.1"
                     /translation="MCALGAGVPAVVASAAKGKSPGLHEIYSIQAFLPYLNSTFFIHG
                     GPLDRVEVVLEKITDLKATKGRKMAGRESFSLLFKERNQGARFGQNTYVIEHSKGEQF
                     TLFIVPVGKHDAGLYEAIITTR"
     gene            1987..2502
                     /locus_tag="VIJ87_05035"
     CDS             1987..2502
                     /locus_tag="VIJ87_05035"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY5443832.1"
                     /translation="MTLSLRPATSEDAAFSFQVYASTRADEMSVVPWSEEEKRSFLEM
                     QFNAQRASYLQNRPQAEWLVVMRDEVAIGRMIVDRSADEICLMDIALLPEHRNAGVGS
                     KFIKELMAEAEETGKKVTLHVESYNPAFRLYSRFGFKEIREEGFYLAMEWSPKSSESA
                     KATSEEGLTRD"
BASE COUNT          678 a          593 c          668 g          674 t
ORIGIN      
        1 atcttcgcga aagctgatgg aacaaaaacc ttgggccaga tcctcgagca cgtagatgcg
       61 aacccaggtg atgcgaatga agcattggaa tttctgacca ccatcgagcg acagctcatc
      121 aagctgactt cgaacaaaga agactgtgcc aatccattca agccatgcaa catcattggc
      181 agagatttgt ttcacgcaag cgaagcagag tcaattagcg aaattgattc agtcacagag
      241 tttcatttgc gtggtatcga agatggtagt tgggagtttg atcaaatcga gccgacgatt
      301 aatcacgcgt ttcgattccc tggcgaagta ttcgatgggc tcagctacgg ggccaggttc
      361 tgcgcttcgg ctcttggccc aatcgaaaag aaagagttgg atatcctgga agtcggggga
      421 ggaacgggat cttttgcttc atcgttcatc gaggaatcgc aacgaagagg gatcgacctt
      481 aactatcaca tcctcgattt gtcgccagtc ttgattgaac accagaaacg agcgctggca
      541 gaacgtggct ttgaagttac gcacttccat cagaatgcga cggagtttga ccttcctggc
      601 aggacatttg acctaattgt ttccaacgaa gtgattgctg actttcccgt cgcagaagtt
      661 cgatgtaccc gcgacgagaa tggcgaggcg tgggatgggc caggtcttca atgggttgag
      721 aagtattcgc ttgagacgcc gcccaacaca gatcagtttc ttgtcaattc tggtgtcttt
      781 gagttcgtgg aacgggcctg gaagcatttg cacgagggtg gccgcttcat tgttacagag
      841 tacggtggtg aaaactcgta cccggttcag gcaattcaat tgaaccatga ggagttttca
      901 atccactttg gacacgtaaa gaaatgtgca actcaaatag gattcgaatg tgaattggtt
      961 cctttgaaga acttcttagc ggcaaacgat caggtttcaa tactggacgg acgtgaactg
     1021 aggattttat gtttgaatca cattcttcgc agtcatgatc tcccggcaat gacatactca
     1081 gcctggtcca gctacgagtt tgagcggcaa tatggccacg cggcaaacaa gcttaatttg
     1141 atcggcttgt cgttttcacc actgcgtggc ggctaccact tcacacctga gttagacctc
     1201 ttcatggcac tcgttatgaa caagtcccgt aaagtttctg gtatctaact gaagggatca
     1261 aagcccttga cgaaaatgta agcgagcaag attctttgct tgtaatcatt ctcggttcga
     1321 tatatattgc gctcgcacca ttcccgatag ccccgcaaat ggttccatct cgaaggcgtt
     1381 tgggaatcca ataagttcat caagatcttt cggcctaaac cctgtacaaa gggacggcta
     1441 cccccgacga aagatcctgc cggtattgct tcacgtaaca ggaacacatt agttccttgg
     1501 tgcagccctt tcttcttaca aaacgcctag gaggttggaa aaatggccac gtcgcgtcga
     1561 aatttccttc gagttagtac tatgtgtgca ctgggtgctg gagtccctgc agtagttgct
     1621 agcgcagcaa aaggaaagtc tcccggcctc cacgagatct acagcattca ggcctttctt
     1681 ccctacctca actcaacatt tttcatccat ggtggcccac ttgatagggt tgaggtcgtt
     1741 ttggaaaaaa tcactgacct taaggctact aagggtcgca agatggccgg tcgcgaaagc
     1801 ttttcgctgc tattcaagga gcgcaatcag ggtgcccgct tcggccaaaa tacctacgta
     1861 atcgaacatt caaaaggcga acagttcact ctattcatcg ttccggtcgg taaacatgat
     1921 gcgggactat acgaagcaat tattactacc aggtagtttg gctgctgcat tgtcttcata
     1981 gccacaatga ctttgtcgtt acgtccagct acttcagaag acgctgcgtt ctcatttcag
     2041 gtttacgcta gtacccgggc tgacgaaatg tcagttgttc cctggagcga ggaagagaag
     2101 cggtcgtttt tggaaatgca gttcaatgcg caacgtgcct cgtaccttca aaatcgacct
     2161 caagctgagt ggctcgtggt aatgcgtgat gaggtagcga tcggtcggat gattgttgac
     2221 cgctcagccg atgaaatctg tttgatggat attgctctct taccggagca cagaaatgcg
     2281 ggtgtcgggt cgaagtttat aaaagagctg atggcggaag cggaagaaac aggaaagaaa
     2341 gttacgttgc acgtggaaag ttacaacccg gcgtttaggt tgtactcgcg atttggtttc
     2401 aaagagattc gtgaagaagg tttttacctc gcaatggaat ggtctccgaa gtcgagtgag
     2461 agtgctaaag ccacaagtga ggaaggttta actcgtgact gaggtgctca ctcaaaaagc
     2521 gtttgccgat cagatcaata cgaagttcac gctagttgtt gaggggttag atccaattga
     2581 actcaaactg agccgagttt cagacttgac tgt
//
LOCUS       DATCGC010000529         1315 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_140629, whole genome shotgun sequence.
ACCESSION   DATCGC010000529 DATCGC010000000
VERSION     DATCGC010000529.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1315)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1315)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1315
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140629"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            69..1103
                     /locus_tag="VIJ87_05040"
     CDS             69..1103
                     /locus_tag="VIJ87_05040"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEY5443833.1"
                     /translation="MYDLIIIGAGPGGIALGAEARASGIDSSKTLILEKAVTHNWAIR
                     QLYPEQKLTTANYKGFQARCQGLLCIGDMNKSETIEYFDRIIKDYKLNLVYGAEVYAM
                     RSIDDATGARFRVESSKGSYESKVLAVGIGIFGRPNKPKEYSFPPSLKGRLLFDITSQ
                     PIENEDVLVVGGGDTAAEYVEYLHKQNNRVTLSYRGTEFTRLNDHNHAALLEMEQRAE
                     VRILRDSNITKVEDDAGRPRLNYKEVRHAPTTFDRVVYALGGTTPINFLRMLGIKVND
                     EGPVFNENGETDVPGLFLIGDLVVGKKGGSIITAFNSAVRAMRRICEGYLMCSETQAS
                     TIKTTSEVNS"
     gene            1100..>1315
                     /locus_tag="VIJ87_05045"
     CDS             1100..>1315
                     /locus_tag="VIJ87_05045"
                     /inference="COORDINATES: protein motif:HMM:NF019845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HEY5443834.1"
                     /translation="MSTKMKAALISKPGGDWELVEREIPEPGAGQVRVKVEACGICHS
                     DVLVKEGLWPGLQYPRVPGHEVAGRIDA"
BASE COUNT          337 a          317 c          386 g          275 t
ORIGIN      
        1 gtcggtgaag ggtcgattgc cgtgtctttc gtgcatcaag tgctcgccga gtaaatacgg
       61 agtccagcgt gtacgatctc atcatcattg gcgcgggtcc gggaggaatt gccctcggcg
      121 cagaggcgcg ggcgtcaggc atcgactctt caaaaaccct cattcttgag aaggcagtta
      181 cacacaactg ggcgatccgg cagttgtatc ccgagcaaaa actgactacc gcaaactaca
      241 agggctttca ggcccgttgc cagggcctac tctgtattgg cgatatgaac aagtccgaga
      301 caatcgagta ttttgatcga atcataaaag actacaaatt gaatttagtg tacggcgcgg
      361 aagtttacgc gatgagatct atcgacgacg caactggcgc gcgttttcgg gtcgaatcgt
      421 caaaaggatc ctatgagtcc aaggtgctgg cagttggcat cggaatattc ggtcgaccga
      481 acaagccgaa agaatacagc ttccctccct cgctcaaagg ccgactgttg tttgacataa
      541 cttctcagcc tatcgagaac gaagacgtgc ttgtagtcgg cggtggcgac acggcggcgg
      601 agtatgttga gtacctgcac aaacaaaaca accgcgtcac tctctcgtat agaggcacag
      661 agttcacacg gctgaatgac cataaccatg cggcactcct ggagatggaa cagcgtgcgg
      721 aggtgaggat actcagagat tcgaacatta ctaaggtcga agacgacgcc gggcgtccgc
      781 gtctcaacta caaggaagta cgacacgcgc caactacatt cgaccgtgtg gtgtatgcgc
      841 tgggcggaac aacaccgatc aatttcctgc gaatgctcgg tatcaaagtc aacgacgaag
      901 gtcctgtttt taacgagaat ggtgagacgg acgtccctgg gctgttcctg atcggtgacc
      961 ttgttgtcgg caagaaaggc ggctcaatca ttaccgcgtt caattcggca gttcgtgcga
     1021 tgcgacgcat ctgtgagggt tacttgatgt gcagcgaaac gcaggctagt acgatcaaga
     1081 caacgagcga ggtgaattca tgagtacgaa aatgaaggca gcactaataa gcaaaccagg
     1141 tggagattgg gaattggtgg aacgcgagat tccggagcct ggggccgggc aagtacgagt
     1201 gaaagtggag gcatgcggca tttgccacag cgacgtcctg gttaaagagg gtctctggcc
     1261 gggacttcag tacccgcgtg tgccgggcca tgaagtggca ggacgcattg atgcg
//
LOCUS       DATCGC010000530         1718 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_340130, whole genome shotgun sequence.
ACCESSION   DATCGC010000530 DATCGC010000000
VERSION     DATCGC010000530.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1718)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1718)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1718
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_340130"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..318
                     /locus_tag="VIJ87_05050"
     CDS             <1..318
                     /locus_tag="VIJ87_05050"
                     /inference="COORDINATES: protein motif:HMM:TIGR01727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015440 - ABC-type peptide transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide/dipeptide ABC transporter
                     ATP-binding protein"
                     /protein_id="HEY5443835.1"
                     /translation="KIVEESPGDELFARPKHPYTEGLLRSVPKLTSEHVIKQERLETI
                     EGTVPRPTDLPPGCHFAPRCSHRMPRCIEGEIPLYHIEGEVSVRCVLYDLAAAVAADH
                     QVQ"
     gene            486..1475
                     /locus_tag="VIJ87_05055"
     CDS             486..1475
                     /locus_tag="VIJ87_05055"
                     /EC_number="7.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HEY5443836.1"
                     /translation="MAQTLVSVSNLVKHFPVEGTDDVVRAVDGVSFDIYAGETLGLVG
                     ESGCGKSTVGRCLLRLIEPTSGTVNFLGRDVLKLDRGDLRQLRREMQIIFQDPYASLN
                     PRMKIGDIVGEPLVIHKQGTKSERRERVAELLRRVGLDPDYMSRYAHEFSGGQRQRIG
                     VARTLALNPQLIVADEPVSALDVSVQAQVVNLLQELQEEFKLTYLFISHGLAVVEHIS
                     TRVAVMYLGRIVEVASAEDLYAQPLHPYTQALLSAIPIPDPKQKRKRIILQGDVPTPI
                     NPPSGCRFRTRCPIAIEDCAHIDPELREISTGHEVACIRVPGWDEAKAKSTTN"
BASE COUNT          389 a          443 c          467 g          419 t
ORIGIN      
        1 aagatagtcg aggagtcacc gggtgatgag ttgtttgcgc gaccaaaaca tccgtacacg
       61 gaggggctgt tgcggtctgt gcctaagtta acgagtgaac acgtaatcaa gcaggagcga
      121 ctggaaacga tcgaaggaac cgttccacgc cctaccgatc ttccgcctgg ttgtcacttt
      181 gcgcctcgct gttcgcatcg aatgcctcgt tgcattgaag gcgagattcc gctttatcac
      241 attgaaggtg aggtaagcgt tcgctgcgtg ctctacgatc ttgccgcggc tgtcgctgcg
      301 gatcatcagg tgcagtagcc cgactgttaa ggagggctca acgttgggta gttgttgatc
      361 agcgcaaccc gagccctcct tgacagtcgg gctactgcac cggtcgctac tgcaccggtc
      421 gctactgcac cggctgctac tgcaccggtt cttgcgatag aggtagcaca gagaagattg
      481 agaagatggc ccaaacactc gtcagcgtta gcaatctagt aaagcacttt ccggttgaag
      541 gcacggacga cgtggttcgt gctgtcgacg gagtttcgtt cgatatctac gccggtgaaa
      601 cgctcggact agttggcgag tcgggatgcg gaaagtccac agttggtcgt tgcttgttgc
      661 gcctgattga accgacttca ggaacagtta actttcttgg tcgcgatgtg ctgaagttag
      721 accgtggaga cttgcgccag ttgcgacgcg agatgcaaat aatttttcaa gatccttacg
      781 cgtcacttaa tccgcgcatg aagataggcg acattgttgg cgagcctttg gtgattcata
      841 agcaggggac caagtccgaa cgccgcgaac gggttgctga gttgctgcga cgtgtcggtt
      901 tggatcccga ttacatgagt cgttacgctc acgaattctc gggtggtcag cggcagcgaa
      961 tcggtgttgc tcgcaccctg gcgttgaatc cacaacttat cgttgctgac gaacccgtct
     1021 ccgcgcttga tgtttcggtg caggcccaag ttgtgaattt gcttcaggaa ttacaggaag
     1081 agtttaagtt aacttacctg ttcatctcgc atggtctggc ggtcgtcgaa cacatttcga
     1141 ctcgcgttgc agtcatgtat ctggggcgga ttgtcgaggt agcaagcgct gaagatctgt
     1201 acgctcaacc gctccaccct tacacgcagg cgctgttgtc ggcgattccg atcccggatc
     1261 ccaaacagaa aagaaagcgc atcatcttgc aaggcgatgt cccaacacca atcaatccgc
     1321 cttctgggtg tcgctttcga acgcggtgtc cgatagcgat cgaagactgt gctcacatcg
     1381 atcctgagtt acgtgagatt tcaacaggtc atgaagtagc ttgtattcga gttccaggct
     1441 gggacgaggc caaggcaaaa agtacaacta actgataagg caaaacatta ccaacctggg
     1501 ttgcgtatca gttccgtatc tcaatcactt cgacggagtt tatctccccg tcttcttgta
     1561 ggaggactaa aacaaatgag tgaaccggcc gataattttc aaccaccgcc accaccgccg
     1621 atgccagacg ctccaacacc tgcgccacgg cccacaaagc tgaggccaat tggtattgcc
     1681 tgcttcgtaa tcggtctaat tattctcggt ctatctat
//
LOCUS       DATCGC010000531         1303 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_10913, whole genome shotgun sequence.
ACCESSION   DATCGC010000531 DATCGC010000000
VERSION     DATCGC010000531.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1303)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1303)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1303
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10913"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..694)
                     /locus_tag="VIJ87_05060"
     CDS             complement(<1..694)
                     /locus_tag="VIJ87_05060"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2012 domain-containing protein"
                     /protein_id="HEY5443837.1"
                     /translation="MRKTVRACCVLCCLLTLSLLSQAQDIEPKYKTADTNNAVIHGRV
                     VLSTGFAAERFFRVTLRNTQSTLMTTYTNKSGEFQIRNLSEGTYYVQVDAPDETYEPA
                     TRRIELGRGLFADITLELREKKDPAASRLGARVVSAAELRQAIPPAAKKQYEQGLKFV
                     TKGDYSQAATCFEGALALYPEYIAARNDLGAQYLKLKRVDEAEKHFQIVLGNDPKNFN
                     ATFNMGLVQVERR"
     gene            complement(946..>1303)
                     /locus_tag="VIJ87_05065"
     CDS             complement(946..>1303)
                     /locus_tag="VIJ87_05065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443838.1"
                     /translation="RSNFDISFFKNFNISESKKFQFRTGLFNVFNQAYPTQINTTSTN
                     LTGSDIFLTLDTVCNTRVNTPNGIGGTANPCDPLAGFRYTDGRSGDRSDTIHNFGKIV
                     NKHGRRIVEFAFKFNF"
BASE COUNT          307 a          322 c          324 g          350 t
ORIGIN      
        1 ctcgccgttc gacctggacc aaccccatat tgaaagtcgc gttgaaattt ttcggatcgt
       61 tccccaggac aatttgaaag tgcttctctg cttcgtccac tcgcttcagc ttcagatact
      121 gcgccccaag atcattgcgc gcggcgatgt attctgggta gagagctaat gcgccttcaa
      181 aacaggtggc cgcctggctg taatcacctt tggtaacgaa ctttaatccc tgctcgtatt
      241 gtttctttgc ggcaggaggt attgcctggc gcaactccgc cgccgaaact actctggcac
      301 caagcctact ggcagccggg tccttcttct cgcgcaactc aagtgtgatg tcggcaaaca
      361 atccgcgacc gagttcgatc cttctggtgg ccggttcata ggtttcgtcg ggagcgtcga
      421 cctgaacgta ataggtgccc tcgctcagat ttctaatttg gaactcaccg ctcttgtttg
      481 tataggtggt catcaaggtg ctctgcgtgt tgcgcaaagt gaccctgaag aatctctctg
      541 ctgcaaagcc ggtggatagc accactcttc cgtggattac ggcgttattg gtatcggcag
      601 tcttgtattt tggctcaatg tcctgagctt gcgagagtag ggaaagagtc aacaagcaac
      661 ataagacaca gcaagcgcgg acagtctttc tcataggcac atccttcaag atctcgctag
      721 gtcccgactc caagtggtgt tgatattgta aaccctttca agccgatcgt ctgtccttca
      781 gtagttgccc ttcagcagtt cttgattcaa tacgacggcg aaacaacacg ccaggcattc
      841 gactcctgaa aatgtatcca acatgttcgt cgaaaagaaa accggcgcga gaagcgaatg
      901 aatcgctatc tcgcgccgaa ctaaaggtaa agctttcttt gaccgttaga agttgaactt
      961 gaatgcaaat tcaacgattc ggcgtccgtg tttgtttacg atcttgccga agttgtggat
     1021 cgtgtcgctt cgatctccgg agcgaccgtc tgtataacgg aagccagcta acggatcgca
     1081 aggattcgcc gtaccaccta ttccattagg ggtgttcact ctagtgttac agacagtgtc
     1141 gagagttagg aagatatcac taccagttaa gttggtcgag gtagtgttta tctgagtcgg
     1201 ataggcttga ttgaatacgt tgaataagcc cgtccggaat tgaaacttct tagactcgct
     1261 gatgttgaag ttcttgaaga acgaaatatc aaagttgctg cgg
//
LOCUS       DATCGC010000532         1153 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_75842, whole genome shotgun sequence.
ACCESSION   DATCGC010000532 DATCGC010000000
VERSION     DATCGC010000532.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1153)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1153)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1153
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75842"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            127..>1153
                     /locus_tag="VIJ87_05070"
     CDS             127..>1153
                     /locus_tag="VIJ87_05070"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY5443839.1"
                     /translation="MNSRDFEDNNYNYTIQDSVLWVKNKHSFKFGFQYQKTYDKVKND
                     DTGSFFVANFSNSQTAQFSSGSTLNAATGNSYASYLIGALSGATVLEDTVSGSTPTTA
                     QFSTTSFWVADDYRWNSRLTLNLGLRYDYMIPYTEKDDHFTFLDPTIPNPAAGGRPGV
                     LRFGGNYAPDAISCHCSQIVNTYPNAWGPRVGFAYAYDDKTVVRGGYGIMYTRRGAVG
                     GRENARSGSGFTGLNASPALAAPNGFDPAFYWQNGIPPFIKGPIFDQTYLTGFNAPNV
                     TGGTLTYAEPDSQPPRYQNWNLSIQRSLTSSLVLTAAYVGSNGKQLAGAGRGSWSNQI
                     DPRYLVLG"
BASE COUNT          281 a          299 c          293 g          280 t
ORIGIN      
        1 aacgctactt ccgatgggaa atggtcacag caatccgggc ttcaaggtct acctcccggt
       61 gatgcgagcg atgctttcct tgaagcaaca tttggcggca ctaattcccc cagcgggtgg
      121 cgcgcagtga actcgagaga cttcgaagac aacaactaca attacacgat ccaggacagt
      181 gttttgtggg tgaagaacaa gcactcattt aagtttggtt tccagtacca aaagacatac
      241 gacaaagtta agaacgacga cactggaagt ttcttcgtcg ctaacttcag caatagtcag
      301 acggcgcaat tcagctctgg cagcacacta aacgccgcca ccggtaactc atacgcgagt
      361 tatttgattg gggctttgag cggcgctacc gtgcttgaag atacggtgtc aggctctact
      421 ccaacgacag cgcagttcag cactacgtct ttctgggttg ctgatgacta cagatggaat
      481 tcgcgtctca cgttgaacct tggactgcgt tacgactaca tgattcctta cacggaaaag
      541 gatgatcact tcactttcct ggatcccaca attccaaacc cggcagcggg aggtcgacct
      601 ggcgttttac gtttcggcgg caattacgct ccagatgcca tcagctgtca ttgcagtcaa
      661 atcgtaaata cctatccaaa tgcatggggg ccacgagtcg gatttgctta cgcttacgac
      721 gacaagacgg ttgtgcgtgg cggttatgga atcatgtaca caaggcgagg cgctgttggc
      781 ggtcgtgaga atgctcgatc gggttcaggc tttaccgggc taaacgcgag tccagcacta
      841 gccgcaccga atggattcga tccggctttc tattggcaga acggaattcc tcctttcatc
      901 aaaggaccaa tcttcgacca gacttatcta accggcttca acgcgccaaa cgtgactggc
      961 gggactttga cctatgccga gccagacagt cagcctcctc gttatcaaaa ctggaacttg
     1021 tcgatccaac gctcgcttac gtcatcgtta gttttgactg cggcgtacgt cggtagtaat
     1081 ggcaaacagt tggcaggagc gggtcgtggt tcttggtcga atcaaattga tcctcgttac
     1141 ctcgttctcg gta
//
LOCUS       DATCGC010000533         1269 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_140660, whole genome shotgun sequence.
ACCESSION   DATCGC010000533 DATCGC010000000
VERSION     DATCGC010000533.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1269)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1269)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1269
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140660"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..329)
                     /locus_tag="VIJ87_05075"
     CDS             complement(<1..329)
                     /locus_tag="VIJ87_05075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443840.1"
                     /translation="MRIKLVTFSLLSVLLLCSYLEAGATTISIDSLNTFLFTNNDPWS
                     GNGSVPGSVPIALGSLGISGGQFIQLEQLGSFYDGTYGYGPGVDASKLAVSTEMIGVF
                     SSTNVLLA"
     gene            complement(889..>1269)
                     /locus_tag="VIJ87_05080"
     CDS             complement(889..>1269)
                     /locus_tag="VIJ87_05080"
                     /inference="COORDINATES: protein motif:HMM:NF023903.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3703 domain-containing protein"
                     /protein_id="HEY5443841.1"
                     /translation="RGRIELWSLRRYEMHSELRKAYDAEMNAAIEDYYGNNLHEAFHH
                     LEAAHVLGQSFTFAHVRAHWWMLRIGWKRRDSIEIRGQFGRILAALIFSRIWVPLGNT
                     GGANVHPLKPMPIPEELQALLKRR"
BASE COUNT          329 a          327 c          320 g          293 t
ORIGIN      
        1 gccaacagca cattcgtgct actgaagacg ccgatcatct cggtagatac cgcgagcttc
       61 gaggcgtcca caccaggtcc atagccgtag gtcccatcat aaaaggaccc gagctgctcg
      121 agttggataa actgccctcc gctgattccc aaactcccta gagcaatggg cacagagcca
      181 ggcaccgaac catttcctga ccagggatcg ttattggtaa agaggaaggt gttgagcgaa
      241 tcaatcgaaa tcgtcgtcgc tccggcctcg aggtaagaac aaaggaggag aacgctcaac
      301 aaggagaatg tcactagctt tatccgcatg atctcttgcc ctagccttct gctgatgaaa
      361 acttacccaa tcaggagagc aagaggtgtt ccaagcttcc ttgtgctgtg ctgtcgaagc
      421 aatcaaccta aagtaaaagg ctttttcaat gttgagacaa tccatccttg gtaggagtgc
      481 ggtttctgcg ccgcatttca tgcagaaata ggatggggaa catttgccgc agggcgggcc
      541 gactgtcacc cggcacacga tacggtttta gaatgccccc tgggccatga tcaggcatat
      601 ctcaggggac tggatctcta aaattaagcc cgatggattt cccgccttgg ccgtcatcga
      661 gcgtgcgcag tgccggtttt ttccaggaag acacacagtc ggagttagag acctattgct
      721 tcgcgggaag tatggtggtc gacactgagt ggcatgggag ttaaggcgcg gagcctacgt
      781 tcggcatgaa gacgagtaat acctagccac gcacaagcag tggcaaaatc agaaaagacc
      841 atcatggacg cggaaggctt taagaacttc tgaaacccag caggcgcgtc aacgtctctt
      901 caacaaagcc tgaagctctt ctggtatggg catgggttta aggggatgaa cattcgcacc
      961 cccggtgttc cctaaaggaa cccagattct tgagaagatt aacgccgcaa gaattctgcc
     1021 gaattggcct cttatttcta ttgagtcacg gcgtttccag ccgatcctca gcatccacca
     1081 atgtgctctg acatgagcga aggtgaacga ttggcccaag acatgagcag cctctagatg
     1141 atggaaagct tcatgcaagt tgttgccata gtagtcttca atcgcggcat tcatctctgc
     1201 gtcataagct tttcgtaact cactgtgcat ttcatacctc ctaagactcc ataattcaat
     1261 tcttcctcg
//
LOCUS       DATCGC010000534         1042 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_140678, whole genome shotgun sequence.
ACCESSION   DATCGC010000534 DATCGC010000000
VERSION     DATCGC010000534.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1042
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140678"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(345..>1042)
                     /locus_tag="VIJ87_05085"
     CDS             complement(345..>1042)
                     /locus_tag="VIJ87_05085"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEY5443842.1"
                     /translation="VVFDYTGPGIRRSIEDSLQRLGIDSLDIAFVHDLSPDNKLLPTP
                     WEDQFKIAMTGAFPELTRMREEGVIKGWGLGVNRPEPILRLLEVADPDVCLLASQYSL
                     IDHKNALNNVFPAAREKNVSFVIGSSLNAGFISGSPRYNYGKDSYKIPAPYIEKRKKL
                     CDAAGNHGVDLRTAALQFSAAPDVAAALVVGVSKERQILEDYTSMQTKIPAEFWAELK
                     SQNLIEQNAPTPV"
BASE COUNT          249 a          269 c          270 g          254 t
ORIGIN      
        1 gtttccttcg accgccgttc gaaacaagaa accgaagtga ccctgaagat tcattccgtt
       61 tgcgatccgc tgaatttatc actgaagttg gaggaatacc tgggcaattt caaacgattg
      121 gtagagagcg aggagacagc acaatgaaaa cttttccgtc cgaggaagcg ctagtcgcgg
      181 catattggcg aagattggcg cggtcgatcg atcggacggg tgccggaaaa cgccggaaat
      241 cttcctcgtt gaaattacca gtcggtccag gagcgcggca acgttttgct gctcgaggaa
      301 tcttaaaccg gcctaattcc taatttcgac ttcctaattt cgactcaaac tggagtcggt
      361 gcgttttgtt cgattaggtt ctggctcttt aattccgccc agaactcagc cggaatcttg
      421 gtctgcatcg aggtgtagtc ttccagtatc tgacgttctt tgctgacccc aaccaccaaa
      481 gctgcggcaa catcaggcgc ggcagagaac tgaagggccg cagttcgcag atcgactccg
      541 tggttcccag cagcatcaca cagtttcttg cgtttctcga tgtacggagc cgggattttg
      601 taggagtcct ttccgtagtt atacctaggg ctgcccgata tgaatccggc attaagcgaa
      661 gaaccgatca cgaaggagac gttcttttct cttgcggccg gaaaaacatt attcagcgca
      721 ttcttgtgat cgattaaaga atactgtgag gctaaaaggc atacatccgg atcggccacc
      781 tcgagaagtc gcaggatggg ttccggcctg tttacgccaa gtccccagcc tttgataaca
      841 ccctcttcgc gcatacgggt cagctcaggg aatgctcctg tcatggcaat cttgaactga
      901 tcctcccacg gcgtcggtaa cagcttattg tcaggcgaga ggtcatggac gaaagcaata
      961 tcaaggctgt cgatgcctag cctttgcagg ctatcttcga tcgaacggcg aatccccggg
     1021 cccgtatagt cgaacacgac at
//
LOCUS       DATCGC010000535         1502 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_309171, whole genome shotgun sequence.
ACCESSION   DATCGC010000535 DATCGC010000000
VERSION     DATCGC010000535.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1502
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309171"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            57..>1502
                     /locus_tag="VIJ87_05090"
     CDS             57..>1502
                     /locus_tag="VIJ87_05090"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HEY5443843.1"
                     /translation="MPVLFEFDYPLPDGVSVFEASIVKAGEDKILGVVRDITERKLAE
                     EALRESEARLRLAQQAARIGTWEWDVRTGVSVWSEMIWELLGLDTDDGVATVDRFVEF
                     IHPEDHDRVVQNINELIAEGEEYYDEFRLVLRDGRVRWVSSKGRLHRSASGVPERMLG
                     VNIDINERKLAEEALKKALAEVQQLKDRLHEENVYLQEEIRVARNFGEIVGTSEALQR
                     VLQKTEQVAPLNTSVLILGETGTGKELLAHAIHNNSPRRRHALVKVNCAALPAPLIES
                     ELFGHEKGAYTGADKQRSGRFEIANGGSLFLDEVGELPLELQAKLLRVLEEGEFERVG
                     GSHTIKVDVRLIAATNRNLAEAVAKGNFRSDLYYRLSIFPMTMPPLRERQEDIPMLVS
                     HLAQQISSKLGKEIAAIPHSAMTVLQNYSWPGNVRELRNVIERAVIISDRSKLRLIDS
                     LDLVRLEDAFQTGDTPRVSDRERESEIETLDQ"
BASE COUNT          364 a          356 c          452 g          330 t
ORIGIN      
        1 taaccaaacc tgagctggcc acaaagttca aaaaagcttt tcaacaagct gcagaaatgc
       61 cagtgctctt cgagtttgat tatccattgc ccgatggtgt tagcgtcttt gaagcatcga
      121 tagttaaagc aggagaagac aaaattctgg gcgtggttcg cgacatcaca gagcgcaagt
      181 tggctgagga agcgctccgc gagagtgagg cccgccttcg tctggcacag caggcggctc
      241 gcataggtac gtgggagtgg gacgtgagga caggcgtgtc ggtctggtca gagatgatct
      301 gggagttgct cgggctcgat actgacgacg gcgtggcgac ggttgaccgg tttgtagagt
      361 tcatccaccc ggaggaccac gaccgagttg tgcagaacat caacgagctg atcgcggagg
      421 gcgaggagta ctacgacgag ttccgcctgg tcctgcgcga cggccgcgtg cggtgggtgt
      481 cgtctaaggg tcgccttcat cgttcggcgt cgggggtgcc cgagcggatg ttaggcgtca
      541 acatagacat caacgagcgc aagctggccg aggaggcgct caaaaaagct ctggccgaag
      601 ttcaacaatt aaaggatcga ctgcatgaag agaacgttta tttgcaagag gagattcggg
      661 tcgctcgaaa ctttggggag attgttggca caagtgaagc tcttcagcgg gtcctgcaaa
      721 aaacggaaca agtggcacca ctgaatacct ccgtcttgat tttgggagaa accggaaccg
      781 gcaaagagtt gttggcccat gccattcata acaatagtcc gcggcgccgg cacgcgttgg
      841 tgaaggtcaa ctgtgccgca ctaccggcgc cacttattga aagtgagttg ttcggccacg
      901 agaaaggcgc gtacaccggg gcagataagc aacggtctgg acggtttgaa attgccaacg
      961 gtggttcact tttcctggat gaggtcggcg aattaccgct cgaactgcaa gcaaaacttt
     1021 tgcgtgtgct tgaagagggt gagtttgagc gtgttggtgg cagccacacg atcaaggttg
     1081 atgtgcgact tatcgctgcg accaatcgca acctggctga agccgtggcc aaaggcaatt
     1141 ttcgctctga tttgtactat cggctcagca tcttcccaat gactatgcca ccactacgtg
     1201 agcgtcagga agatattcca atgttggttt cacatttagc gcagcagatt agttcgaagc
     1261 tcggtaagga aatcgctgcg attcctcaca gcgcgatgac ggtcttgcag aactactcat
     1321 ggcccgggaa tgtgcgagag ttgaggaatg tgattgagcg cgcagttatt attagcgatc
     1381 gttcaaagct gcggctcatc gatagtctcg acctggtaag acttgaagac gcatttcaaa
     1441 ctggtgacac ccctcgtgtt tccgatcgcg aacgcgagag cgaaatcgaa acgctcgatc
     1501 aa
//
LOCUS       DATCGC010000536         1171 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_406777, whole genome shotgun sequence.
ACCESSION   DATCGC010000536 DATCGC010000000
VERSION     DATCGC010000536.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1171)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1171)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1171
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_406777"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(274..870)
                     /locus_tag="VIJ87_05095"
     CDS             complement(274..870)
                     /locus_tag="VIJ87_05095"
                     /inference="COORDINATES: protein motif:HMM:NF019575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEY5443844.1"
                     /translation="MLKSLRSSKGFTLIELMIVVAIIGILAAIAIPNFLQYQLKSRQS
                     EAKTNLGAIKTSEVAFQAERGCFVGVAAEGVVAPAGGTKTTPFTWGAGAPASAPGTLW
                     CTAVFAGTFNDIGFVATGNVMYRYGVDATTVAAPGLYTQATSCAPYAGATMTAATGVA
                     GNNNFVAVAKSNLDGDASVSTWDSSVDHGSNDCTVGVF"
BASE COUNT          310 a          296 c          297 g          268 t
ORIGIN      
        1 ctcgtttgag atattgaccc ttgggaagtt gcgcgaggct ttcaatctga tcaacaggac
       61 ggtcgtgaag agtatcaaga gaaaattgga gccatccgat gctagcaagc aggaggatca
      121 caacaatgcc aacgaatgac gacttgagaa ataaaaagcc tttcatactt tgaggaagcg
      181 ctgaaatgtc attgcagtgc ggtacgataa gacaaggaaa tcccggcagc cattggaggc
      241 tgccgggatc gctggcgact taactagacc agcttaaaac acaccgacgg tacaatcgtt
      301 gctgccgtgg tcaaccgagg aatcccaggt tgacacgctg gcatcaccat ccagattgga
      361 tttagcgact gcaacaaagt tattattacc agcaactcca gtggcagcag tcatggtagc
      421 accggcgtac ggagcacaag aagtggcctg tgtatagagt ccgggggccg caaccgtcgt
      481 tgcatctaca ccatatctgt acatcacatt accggttgcc acgaacccaa tgtcgttgaa
      541 ggttcccgca aacacagcag tacaccatag agtgccgggt gcacttgcgg gtgcaccagc
      601 gccccaggta aatggagtcg tctttgtacc gccagcgggc gccaccacac cctccgcagc
      661 caccccaacg aagcagcctc gctcggcctg aaacgcgact tcggacgttt taatagcccc
      721 gaggttcgtc ttggcttcgg actgcctcga cttcaactga tactgcaaga agttcggaat
      781 cgcgatggcg gccaagattc cgatgatcgc cacgacgatc atcaactcga tcagtgtaaa
      841 acccttacta ctgcgtaacg acttcaacat ggtgaccctc cttttgttaa ctcactgccc
      901 ctttattggc cttggatgac tttccgaagt taaggaggag agtttgcacc tttcatgccg
      961 atgaaccgtc acagcagcat cacatatttt caattactta ggatattgcc ataggtgtgg
     1021 ttggtacaga atcatacact ggtttccatt gtttgatact tagggacaag atttggtata
     1081 cggcggtcag ggattcgacg gataagaggg gacagggata aaacctgctt aaggggttaa
     1141 tttctgtgaa gaagtatttt gcgacacccg t
//
LOCUS       DATCGC010000537         1072 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_140723, whole genome shotgun sequence.
ACCESSION   DATCGC010000537 DATCGC010000000
VERSION     DATCGC010000537.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1072)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1072)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1072
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140723"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1072)
                     /locus_tag="VIJ87_05100"
     CDS             complement(<1..>1072)
                     /locus_tag="VIJ87_05100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443845.1"
                     /translation="MWYIDKRQIENGEFGGGLSDDGDLTNVWPATALMGIEPEKVKTS
                     LLRELDAFYKQGMFTNGFPTIQADDLHSYEEGISTLGQGMLLDYGSPKQLERAMETAR
                     SLKTLTSINPAGHRHVRSSYFNGTKMAEEEPWGWARTNSYMITHPALMLVQYNGNPET
                     KKLILELADGLLAHRRNEGGRFRLHATVGFKTDDDVASTLERVWPIIWTAWRWSGDRK
                     YLQPFLDEGPRSLESIGSDALDQIGVPQEWRDGIVSAAAAAGGSDASKHLAWQVTGNK
                     QYLESMYASQIEASRLREYINTEGSLWIDRVNVPYTELQRARLGGVAMVRNSYYPGNA
                     VSWKFQSPANEESAAILVREATP"
BASE COUNT          229 a          299 c          265 g          279 t
ORIGIN      
        1 tggcgtcgcc tcacgaacaa gaatagcggc gctctcttca tttgctgggg attgaaattt
       61 ccagcttaca gcgttgcctg ggtagtagga gtttctaacc atggcaacac ctcccaatcg
      121 ggcgcgctgc aactcggtat aaggaacatt cacccgatca atccaaagac tgccttcggt
      181 gttgatgtac tcacgaagcc gactcgcttc gatctgcgac gcgtacattg attccaggta
      241 ttgcttattt ccggtcactt gccatgccag gtgtttcgac gcgtcgctcc ctccagcggc
      301 tgcggcagct gagacaattc cgtctcgcca ctcttgtggt acaccgattt ggtcgagtgc
      361 gtctgagccg atcgattcca agcttcgtgg tccttcatcg agaaatggtt gaaggtactt
      421 tctatctccg ctccaacgcc acgcagtcca gatgatcggc caaacacgct cgagagttga
      481 ggcaacgtcg tcgtcagtct taaacccaac cgtcgcgtgt aaacgaaaac gtcctccttc
      541 gtttcgacgg tgcgctaaca aaccatcggc aagttccaga atgagtttct ttgtttccgg
      601 gttgccgttg tattgaacca acatcaaggc cggatgagtg atcatgtagg agtttgtcct
      661 ggcccaaccc cacggttcct cttcagccat tttcgttccg ttgaagtaag acgagcggac
      721 gtgacgatgt ccagctgggt taatgctcgt tagagttttt agtgagcgcg cagtttccat
      781 cgcgcgttcc aactgttttg gactgccgta gtcgagcagc atcccctggc ccaacgtcga
      841 aataccttct tcatagctgt gcaggtcatc ggcttgaatc gtaggaaagc cgttggtgaa
      901 cattccctgt ttatagaaag cgtcgagttc acgcagtaac gatgtcttga ccttctcggg
      961 ctcaataccc atcaacgcag tggccggcca cacgttggtt agatcgccgt cgtcagatag
     1021 acctccacca aactcgccat tctcgatctg acgtttgtcg atgtaccaca tg
//
LOCUS       DATCGC010000538         1390 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_175409, whole genome shotgun sequence.
ACCESSION   DATCGC010000538 DATCGC010000000
VERSION     DATCGC010000538.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1390)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1390)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1390
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175409"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            415..1326
                     /locus_tag="VIJ87_05105"
     CDS             415..1326
                     /locus_tag="VIJ87_05105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443846.1"
                     /translation="MLRHRIYYRLKPFVPRSIRLGIRRWFATRKRKEVRDIWPIVPAS
                     ERRPADWLGWPDGKQFALVLTHDVEGKAGLRKCRELMRLEQELGFCSSFNFIPEGDYK
                     VPPELRAELESNGFEVGIHDLKHDGRLFVSRRGFSQRAARINHYIHQWGVCGFRAAFM
                     LHKLDWLHELDIVYDMSTFDTDPFEPQPDGHHTIFPFWVQNRVNGSVPLPATATRRGY
                     VELPYTMPQDFTLFLLLREPTSDIWLKKIDWLARHGGMALVNVHPDYLCFDEARPKAM
                     EYPSSHYKALLEHVKHRYEGAFWNATP"
BASE COUNT          323 a          352 c          368 g          347 t
ORIGIN      
        1 agggacagcc gcgataacgt gaagcgaggt tatcgtgaac tcgtcgcggc tcgctctgac
       61 gtgtcggtgg ttctgaacaa aactcgtagt tacggtccca attggcttca ggaaggatca
      121 tagccgaagc ttcgctagaa cgattcatat cgccctcgac cgctcttgcg tgcgtcaatc
      181 aaattcgggt cgctgatgtt ccgtgtcacg gacactaaga tttgacccgt ttggtgtttg
      241 cctgatcagg ccatttagag agaaacacga ctgattcgcg atctgtcgcc cgtccggatt
      301 ctcggttcgg gcgcttttaa tctaatcgtc gttttagagt catggctatt tcaatcttag
      361 aggtgatcaa taaagtaacc attatcgcgg acacagtggt gttctgagct tcgaatgtta
      421 cggcacagaa tctactaccg tcttaagccg ttcgttcctc gatccatccg gcttggaatt
      481 cgtcgatggt ttgccactcg gaaacgaaag gaagtccggg atatttggcc tatcgtacca
      541 gcctcggaac gccgccctgc tgattggctc ggatggcccg acggcaaaca attcgccctg
      601 gtgttgacgc atgacgtcga aggcaaagcg ggtttgagga agtgccggga gttaatgcga
      661 ctcgagcagg agctcggatt ttgctcctcg ttcaacttca tcccggaggg agactacaag
      721 gttcccccag aattaagagc tgaactagaa agtaacggat tcgaagtagg aatacacgat
      781 cttaagcacg atggccggtt gtttgtgtca aggcgagggt tcagtcagcg tgcagccagg
      841 atcaaccact acatccatca atggggagtg tgtggctttc gagcggcctt catgctgcat
      901 aaactggact ggctgcacga attggatatt gtctatgata tgtccacgtt cgacactgat
      961 ccttttgaac cgcagccaga cggccatcac actattttcc cattctgggt tcagaaccgg
     1021 gtcaacggaa gcgtcccttt gcccgcaact gctactcgcc gcggatatgt tgaactcccc
     1081 tacacaatgc cacaggactt cacgcttttc ttacttctga gggagccgac gtccgacatc
     1141 tggctgaaga aaatcgattg gcttgcaagg cacggtggga tggctctggt caacgtacat
     1201 cccgattatt tgtgctttga cgaagccagg ccaaaagcaa tggaatatcc gtccagtcat
     1261 tacaaggcgc tcttggagca cgtgaagcac cgttatgagg gtgctttctg gaacgcgaca
     1321 ccgtgaagag tggcccattt ttttcttgat gcaacgaagc ttcccctgtg cagcaaagcc
     1381 taagatcacg
//
LOCUS       DATCGC010000539         1117 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_11048, whole genome shotgun sequence.
ACCESSION   DATCGC010000539 DATCGC010000000
VERSION     DATCGC010000539.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1117
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11048"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1087)
                     /locus_tag="VIJ87_05110"
     CDS             complement(<1..1087)
                     /locus_tag="VIJ87_05110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443847.1"
                     /translation="MHERDAFWSPDGKWIAYNSDETGENELYVRPQDGKGQPQQITKS
                     ADTYYYQPIWSPDSKKLLWSDRLQRLRYVDVSSKTVTEVAQDKMGEIESYDWSPDSQW
                     IAWGQPELNNQNRVYLYSLASKKVSSVTDEWYDSGRVAFSDDGKYLLLSSSRDFKPTF
                     SQNEFQDIYVDMQRIYFVMLAKDTESPVAPRSDEVGKADKKDKDKSDNKDAEKKDEGK
                     KDDKSKKTVTVKVDLDGLQDRIVALETTPANYANLRLVDGRVFYLRRGIGDQAEDDGE
                     DGGGEPKWHLCSYSLEDRKETVLGDVKSYQISFDGKKMLVKIDDDYSIIDLPKDKLET
                     KDHKLELKGLDVIADRRVEWKQIYNESW"
BASE COUNT          211 a          307 c          282 g          317 t
ORIGIN      
        1 gccaggattc gttgtagatc tgtttccatt ccacgcggcg atccgcgatc acatcgagcc
       61 ctttcagttc gagtttgtga tccttggttt caagcttgtc cttgggcagg tcgatgatcg
      121 agtaatcatc gtcgattttc accagcatct tctttccgtc gaaactgatt tggtagcttt
      181 tgacgtcgcc caaaactgtc tcctttcggt cttccagact gtaggaacag agatgccatt
      241 ttggctctcc accaccatcc tcaccatcgt cttctgcttg atcgccgata ccgcgacgga
      301 ggtaaaagac gcggccgtcc accaaccgga ggttcgcgta gttggccggg gtagtttcca
      361 aggcaacgat gcggtcctga agaccatcga gatcgacttt caccgtgacc gttttcttgg
      421 acttgtcgtc ctttttgccc tcgtcctttt tctcggcgtc cttgttgtct gacttatcct
      481 tgtctttctt atcggctttt ccgacctcgt cactgcgcgg agctactgga gactcggtgt
      541 ctttggcgag cattacgaaa tagatccgct gcatgtcgac gtaaatgtcc tggaactcgt
      601 tctggctaaa ggtcggtttg aaatcccgac ttgaagagag cagcagatat ttgccatcat
      661 cgctgaaggc gacccggccc gagtcatacc attcgtctgt aaccgagctc accttcttac
      721 tcgcgagcga atagaggtag acccgattct gattgtttaa ctcgggctgg ccccaggcaa
      781 tccactggct gtcaggcgac caatcatagg actcaatctc tcccatctta tcttgtgcga
      841 cctctgtaac cgtcttgctt gagacatcaa cgtagcgcag acgctggagt cgatcactcc
      901 acaatagctt cttgctatca ggcgaccaga ttggttggta atagtaggtg tcggccgact
      961 tggtaatttg ctgtggctgg cccttgccgt cctgcggtcg gacgtagagc tcgttctcac
     1021 ctgtttcatc ggaattgtag gcgatccatt tgccgtccgg cgaccagaag gcatcgcgtt
     1081 cgtgcacgtt cgacgttttg gtaattgcgc gggaggt
//
LOCUS       DATCGC010000540         1920 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_474116, whole genome shotgun sequence.
ACCESSION   DATCGC010000540 DATCGC010000000
VERSION     DATCGC010000540.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1920)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1920)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1920
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_474116"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..781
                     /locus_tag="VIJ87_05115"
     CDS             <1..781
                     /locus_tag="VIJ87_05115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443848.1"
                     /translation="YPFRWLLGMHPTSEVPFRDARFALVAVFLPVALVVSVLRPGRGP
                     SGAAKTGSIVELRQFWLHGLFIIASYAIWLKQMAYQRYALPLELLTGLMLFLSLDRLL
                     RNRNEVTCVFSVLAVFIVIWTRPANWGRIPYGNDWFGIEIPRDQEPQTLYVMMGHDEP
                     FAYVIPFMPDTSQFIRLTGNMPLDPNMPLGRKALSMIRAHTGTIRSLAVVELDEENRA
                     RLARFGLALTPGSQCERFRSRLDTFTTCALTKNHQEGHLER"
     gene            complement(887..>1920)
                     /locus_tag="VIJ87_05120"
     CDS             complement(887..>1920)
                     /locus_tag="VIJ87_05120"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY5443849.1"
                     /translation="EKVAFLCAHQEELIQRGARAQQRVRADHDVAIAGEEIFRVIDQF
                     ARRRSEQISSPGRTISLDDGPSTPKVSVIVPNYNHAPYLRQRLDSIINQTFRDLEVVV
                     LDDASTDNSREIIQTYADYPMFRLLFNETRNGSAFKQWQKGLESARGEYVWFAESDDC
                     ASPHFLSKLLPILESDKSLGLVYCQSYLIDPSSRVVGDAIQWTDDLDPSRWKKNFINN
                     GRVEIKRYLSKKNTIPNASAVLLRASVLRSIDGLDAGYTLCGDWLLWIKILLRSNVGY
                     VADKLNYWRQRSSNARTHLPGVLELDEGSQIINYLAKELRVPAVEREELLANFATRCA
                     EWMKVSRVL"
BASE COUNT          453 a          538 c          458 g          471 t
ORIGIN      
        1 ctatccgttc aggtggcttc tcggcatgca tccaaccagc gaagtaccgt ttcgcgatgc
       61 caggttcgcc ctagtggccg tattcctacc agtggccttg gtcgtcagtg tgctacgacc
      121 cggtcgtggt ccgtcgggcg cggcaaagac cggtagcatt gttgaattac gacagttctg
      181 gctccacggc ctgttcatca tagcgtcata cgcaatctgg ctcaaacaga tggcatacca
      241 gcgatacgct cttccgcttg aattattgac cggtctgatg ttgttcctga gtctggatcg
      301 gctgcttcga aatcggaacg aggtcacctg cgtgttcagc gtgctcgccg tgtttatcgt
      361 gatctggact cggcccgcca actgggggcg aatcccgtac ggcaacgact ggttcggcat
      421 cgagatacca cgagaccagg aaccccaaac gctatacgtg atgatgggcc atgatgagcc
      481 gttcgcttac gtgattcctt ttatgccaga cacatcccaa ttcatacgcc tcaccggtaa
      541 tatgcctctc gaccctaaca tgccgctcgg acgcaaagct ctgtcgatga tacgcgcaca
      601 cacagggacc attcgaagcc tcgctgtcgt ggaactcgat gaagaaaacc gcgcaagatt
      661 ggcgcgcttc ggtctagccc tcaccccagg gagtcaatgc gaacggttcc ggtcacggct
      721 cgatacattt accacgtgtg ctctgacaaa gaatcaccag gagggacatc tcgaacgatg
      781 aatttactgc gccatggcga ctcaccgacg tttcaatgtg agccggcatt tcctcacgac
      841 ctgactctgc attatttcga cgcacagcgc caagttagcc tgagcgtcat aacactctag
      901 agaccttcat ccattcagca cagcgcgtag caaaattcgc taacagttcc tctctttcca
      961 ccgccggcac ccgaagctcc ttggccaagt agtttatgat ttggctgccc tcatccaatt
     1021 caagaacacc gggaagatga gtgcgcgcat tcgatgagcg ctgcctccag taattcaact
     1081 tatcagccac atagccgaca tttgatcgaa gaagtatctt aatccagaga agccagtcac
     1141 cgcatagcgt gtagcccgcg tccagtccat cgattgatct taggacgctc gctcgaagga
     1201 gaaccgcact ggcatttgga atggtgttct ttttggataa gtaacgcttg atctccaccc
     1261 gcccattatt gataaagttc tttttccaac gcgaaggatc taaatcatcc gtccactgaa
     1321 tggcgtctcc gacgactctg ctgctcggat caattagata agattgacaa taaacgagac
     1381 cgagagactt atcgctttca agaatcggca acaatttgct caagaaatgg ggagaagcgc
     1441 aatcatctga ttccgcaaac catacgtatt ctcctcgagc gctttctaag cctttctgcc
     1501 attgtttgaa ggcagatcca ttgcgggttt cattaaacaa caaccgaaac atgggatagt
     1561 ccgcatatgt ttggatgatt tctctactgt tgtcggtcga agcgtcatcc aatacgacca
     1621 cctcaagatc ccgaaacgtc tggtttatga ttgaatccag tcgctgccga agatacggcg
     1681 catgattata gttaggaact ataactgaaa cctttggcgt ggacggaccg tcgtccaatg
     1741 atatcgtgcg gccagggctt gatatttgct cgcttcggcg ccgcgcaaac tgatcgatga
     1801 cacgaaagat ctcctctccg gcgatcgcta cgtcatgatc ggctcggact ctctgctgtg
     1861 cccttgcccc tcgttgtatt agttcctcct gatgagcgca caagaaagca actttttccg
//
LOCUS       DATCGC010000541         1181 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_273696, whole genome shotgun sequence.
ACCESSION   DATCGC010000541 DATCGC010000000
VERSION     DATCGC010000541.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1181)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1181)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1181
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_273696"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(179..985)
                     /locus_tag="VIJ87_05125"
     CDS             complement(179..985)
                     /locus_tag="VIJ87_05125"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY5443850.1"
                     /translation="MPKVRLNDIEIYYEEHGRGRPMLFLSETACDGEVWKIHQVPEFS
                     RDHRVIIHDYRGTGQSSKPSIDYTTRMFADDVVALMDCLDAEDAIVVGHSMGGRVAQL
                     LALDYPKKVHKLVLASTGAHYPQTKGLPLKICQEMIEWGYEKYERDHTILVGWTEDYV
                     KQHPEKIENYLKVRMHNLCPVEFYLRHLLARQSHDTSQRLKDINQPTLILVGEGDQNM
                     TSEINHRMSSEILARGIPNSKLVVLPNERHSYFFSNPDEAHRLIREFIRE"
BASE COUNT          272 a          304 c          291 g          314 t
ORIGIN      
        1 cgataatcat ggatgatcac cagatgatct ttcgagaact cgggaacttg ataacgcttc
       61 caaatgtcac catcgcaggc ggtctcgcta aaaaagacga atggccgtcc cctaccgtgc
      121 gcttcataaa agatttcacc gtcgttgacg cgaaccgtcg gcatttgtcg ctcgcgcact
      181 attctctgat gaactcacgg atgagccgat gagcttcatc cggattcgaa aagaagtaac
      241 tatggcgctc attgggcagc accacgagtt tggagttagg aatgccccta gccaaaatct
      301 cggacgacat ccgatgattg atttcactgg tcatgttctg atcgccttcg ccgacgagaa
      361 tcagggtcgg ctggttgatg tctttgagtc tctggcttgt gtcatggctt tggcgtgcaa
      421 gcagatggcg cagatagaat tccaccggac aaagattgtg cattcttacc tttaggtaat
      481 tttctatttt ctccggatgt tgtttgacgt agtcttcggt ccagccgacg agaatcgtat
      541 gatcccgttc gtatttctca tagccccatt cgatcatctc ttggcaaatt tttaacggca
      601 gtcctttggt ttgcggatag tgcgcgccag tggatgccag gacaagcttg tggaccttct
      661 tcggataatc gagcgccaac aattgcgcca ccctgccgcc catggagtgc ccgacgacga
      721 ttgcatcttc ggcatcgaga caatccatca atgccacgac atcgtcggca aacatgcgcg
      781 tggtgtaatc gatggacggt ttgctcgatt gtccggtgcc gcgataatcg tgaatgatca
      841 cccgatggtc tcgggaaaat tccggtacct gatgaatctt ccagacctcg ccgtcgcaag
      901 ccgtttcact tagaaatagc attggccggc ctcggccgtg ttcttcgtag tagatctcaa
      961 tgtcattcaa tctgactttc ggcatgatgc actcctctgt ttgtcaagct cgatgcatag
     1021 ttgaacgata ctcctttggc aagcagttcg gcgtggctgt cgtgtcatct cgaacaaaga
     1081 aatagatctt gatcgaacga tatcacttct caacgactca agagcttgcc atacaggcag
     1141 acttgcgaga tctttcaacg gactcggagg gctcatgcac a
//
LOCUS       DATCGC010000542         1024 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_373547, whole genome shotgun sequence.
ACCESSION   DATCGC010000542 DATCGC010000000
VERSION     DATCGC010000542.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1024)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1024)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1024
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_373547"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..207
                     /locus_tag="VIJ87_05130"
     CDS             <1..207
                     /locus_tag="VIJ87_05130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443851.1"
                     /translation="RPSPIPLPQLSASTIAEQYLRLYRELTAASKSPAEASAFAGPAA
                     VENRSSSAVQTPHAPHKPDAARHW"
     gene            271..1017
                     /locus_tag="VIJ87_05135"
     CDS             271..1017
                     /locus_tag="VIJ87_05135"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY5443852.1"
                     /translation="MNAMASEKEILLGGREESVPKAELGTILVIEDDPRMQKVLRRIF
                     AEENYSIEVAGDGQTGLDLFRSHRPVAVVLDLILPQISGRELCQTMKSIAVETPVIVL
                     SAITEVVDKVLLLELGADDYVTKPFSPRELMARVQAAIRRRRRPAQPAVYRFSDCELD
                     FEKMTAHRGGSSVVLTSHEFKLLKFFTENAERVLSRELLLNEVWGYNSYPTTRTVDNQ
                     ILKLRQKLEPDPANPRHLLTIYGAGYKFVP"
BASE COUNT          231 a          276 c          283 g          234 t
ORIGIN      
        1 cggccgtcgc cgattcccct tccgcagtta tctgcctcaa cgattgctga gcagtatttg
       61 cgactctacc gggaacttac tgctgcatcg aagtctcccg ccgaggcttc agcatttgca
      121 gggcctgccg ccgtcgagaa caggtcctcc agcgcggttc aaactccaca tgcacctcac
      181 aaaccagacg cggcgcggca ctggtaagaa ttgtcaaatg tttgtcattt gtaactgttg
      241 gcttgttatg tcgaagggta ggggagcaaa atgaacgcta tggcgagcga gaaggagata
      301 ctgctgggtg ggcgtgagga atcggtcccc aaagccgagc tcggcacaat cctagtcatt
      361 gaagatgatc cgcggatgca aaaggtcttg aggcggatct ttgcagagga aaactactcg
      421 atcgaggttg ctggtgacgg tcaaaccggg cttgatctgt tccgttcgca ccgaccggtt
      481 gcagtggttc ttgacctgat ccttcctcag atttccggca gagaactctg ccaaaccatg
      541 aagtcgatcg cggtggaaac cccggtgatt gtcctgagcg caatcactga agtcgtcgac
      601 aaagttctct tgcttgaatt gggagccgat gactacgtca ccaaaccatt cagccctcgc
      661 gaactgatgg cgcgagttca ggctgccatt cggcggcgcc gccggccggc ccaaccggct
      721 gtctatcgct tcagcgactg cgagttggac tttgagaaga tgacggctca tcgtgggggg
      781 tcttctgtcg tccttacatc gcatgagttc aaactgctca agtttttcac cgagaatgcg
      841 gagcgggtgc taagccggga gttattgctc aatgaagtgt ggggatacaa ctcttatccg
      901 acgacccgta ccgtggataa tcagatactc aaattgcgac agaagctcga gcctgatccg
      961 gccaatcccc ggcatctgct tacaatttac ggagcaggat acaagtttgt cccataaagc
     1021 accc
//
LOCUS       DATCGC010000543         1206 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_11146, whole genome shotgun sequence.
ACCESSION   DATCGC010000543 DATCGC010000000
VERSION     DATCGC010000543.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1206)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1206)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1206
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11146"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..620)
                     /locus_tag="VIJ87_05140"
     CDS             complement(<1..620)
                     /locus_tag="VIJ87_05140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443853.1"
                     /translation="MKVQKVLSGMVVVLLAALIVVSWSSSARAQTNNQQTDTRDDETN
                     LDTQLFLLVATNQPVSDEKLPASLDGVVKQLRATLPFKNYRLAATLINRVKNDGRLDL
                     SWIGGPVATTTAGSSSTVNPSFSQFKVRNVKLARNSGGETVVQMAGFNFGMRIPIQVG
                     QVAVNGGIPAINYENTGLSTDISVREAEPVVVGTLNVGPSGDAIILV"
     gene            complement(758..>1206)
                     /locus_tag="VIJ87_05145"
     CDS             complement(758..>1206)
                     /locus_tag="VIJ87_05145"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY5443854.1"
                     /translation="ALGTDELLRSVVDLFRANAREHGIGLEYQIRDDAQLSGKCVSVL
                     RDALSNLLINALQATSPGGKISLAAALDNADLLISVQDTGPGVPLELREQIWEPFFTT
                     RQRGTGLGLAIVRKRVQEVGGTASLGGAANGGGALFFLRVPIQVAE"
BASE COUNT          289 a          343 c          288 g          286 t
ORIGIN      
        1 accaggatta tcgcgtcgcc ggagggacct acgttcagtg ttccgaccac cactggctca
       61 gcctcacgaa cgctgatgtc ggttgacagt ccagtgtttt cataattgat cgctggaata
      121 ccgccgttga cagcaacttg gccaacctga atcgggattc gcattccaaa gttaaagcca
      181 gccatctgta ccaccgtctc gcctcccgag ttgcgcgcaa gcttcacatt gcgaacttta
      241 aactggctaa agctcgggtt cacagtggaa ctcgacccgg ctgttgttgt agccactggg
      301 ccaccaatcc aactcagatc caatcgcccg tcgtttttga cgcgattgat gagcgtagct
      361 gcaagacgat agtttttgaa aggcaacgtg gctcgtaact gctttactac accgtcgagc
      421 gaagcgggaa gtttttcatc gctaacgggc tggttagttg cgacgagcaa aaagagttgg
      481 gtgtcgagat ttgtttcgtc atctcgagtg tctgtctgtt ggttgtttgt ttgagcccga
      541 gcactggaac tccagctcac gacaatcagc gcggctagca aaaccacaac catcccgctg
      601 agaactttct gaaccttcat agatctttag tctccttcaa tcgagtctag cctgatcaga
      661 tcttgcgcag ttgggccaac agttctacga gactgtcaac gcatgcccta ttcaggacat
      721 tcatgacacg ccccacagct ctgaaagttc cagagaccta ttcagctacc tggattggaa
      781 ctcggaggaa gaataacgcg ccaccgccat ttgccgcgcc accaagtgag gctgtaccgc
      841 caacttcctg cacacgcttc cgcacaatcg ccaagcccaa gcctgtgcct ctttgccgcg
      901 ttgtaaaaaa gggctcccat atttgctcac gaagctctaa cggcacaccc ggtcctgtgt
      961 cctgcacact gattagcaag tcggcgttat caagcgcggc ggcaagtgaa attttgccac
     1021 ccgggctcgt agcctggaga gcattaataa gaagattcga caaggcatca cgaagcactg
     1081 agacacattt gccggaaagc tgtgcgtcat cccttatttg atactccaac ccaattccgt
     1141 gctcgcgcgc atttgcccgg aataaatcaa caactgatct cagaagttcg tcagtaccga
     1201 gggctt
//
LOCUS       DATCGC010000544         1428 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_207274, whole genome shotgun sequence.
ACCESSION   DATCGC010000544 DATCGC010000000
VERSION     DATCGC010000544.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1428)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1428)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1428
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207274"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(10..>1428)
                     /locus_tag="VIJ87_05150"
     CDS             complement(10..>1428)
                     /locus_tag="VIJ87_05150"
                     /EC_number="1.1.1.38"
                     /inference="COORDINATES: protein motif:HMM:NF010052.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004470 - malic enzyme activity [Evidence
                     IEA];
                     GO_function: GO:0004471 - malate dehydrogenase
                     (decarboxylating) (NAD+) activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent malic enzyme"
                     /protein_id="HEY5443855.1"
                     /translation="YTPTVGEGCRQYSHVFRRPRGLYISYPDRNEIPSLLANAPAERV
                     EVIVVTDGERILGLGDLGVGGMGIPVGKLSLYTLCAGIHPSTTLPILLDVGTDNRDLL
                     DDPLYLGWRHERVRGQEYNEFIDLFVDAIRQKFPRVLLQWEDFSKQNAAPLLKRYRDR
                     LCTFNDDIQGTGAVTVAGLLAAMKLTRTTLGKQRIVILGAGSSAIGICDQIMATMLHA
                     GYSEDEAKQSLWLVDSKGLVHKERYQLEASKRKYAQPIERIAKWQLSDPSNLTLSEVV
                     KNVHPTVLIGTSAQPGAFSEDIIREMAAHVERPVVFPISNPTSKSEATPSDLLGWTDG
                     RALVATGSPFPPVNRAGRSIRIGQCNNAFIFPGLGLGVIASGAQRVTDGMFVVAARVL
                     SECSPAMNDPDAPLYPPLECVREISRKVALAVGVEAQRVGVARPTCFEELEHHVTNKM
                     WNPRYVPLRRVVSKCQQTQHRF"
BASE COUNT          338 a          396 c          373 g          321 t
ORIGIN      
        1 ccatgcgaat caaaacctgt gctgagtctg ttggcacttc gagaccacac gtcgtaaggg
       61 aacgtagcgt gggttccaca tcttgtttgt cacatgatgc tccaattcct cgaagcaggt
      121 cggacgtgca acaccaactc gctgtgcctc aactccaact gccaaagcta ctttgcgaga
      181 gatctcacgg acgcattcga gcggaggata gagcggcgcg tcaggatcat tcattgcagg
      241 cgaacattcg ctcaggactc gcgcagctac aacgaacatt ccatctgtaa ctcgctgagc
      301 gcctgaagca ataactccca atcccaatcc tggaaatatg aacgcgttgt tgcactggcc
      361 gatcctaatt gaccgtcccg ctcgattaac cggtgggaac gggcttcccg ttgcgacgag
      421 cgcgcgcccg tcagtccatc caagaagatc ggaaggtgtc gcttcacttt tagaggttgg
      481 atttgagatc ggaaagacga ctgggcgctc aacgtgcgca gccatttcgc ggatgatgtc
      541 ctcactaaaa gcccccggtt gcgccgaggt tccaatcaga acagtcggat gtacattctt
      601 caccacctca gacaaagtga ggttggacgg atctgacaac tgccacttgg cgattcgttc
      661 aattggctgg gcatattttc gcttggaagc ttccaattga taacgctctt tgtgaaccag
      721 acccttgcta tcgaccaacc agagcgactg tttcgcttca tcctctgaat atccggcgtg
      781 aagcatcgtt gccatgatct gatcgcaaat gcctatcgcc gatgagccgg cgccaagaat
      841 cactattcgc tgtttgccga gcgttgtccg cgtaagcttc atcgcggcca acaaacccgc
      901 cacagttacc gcgcctgttc cctggatatc gtcgttgaaa gtgcataagc gatcgcggta
      961 acgcttgaga agtggtgcgg cattttgctt ggaaaagtct tcccactgaa gcaggactcg
     1021 agggaatttt tgccgaatgg catcgacaaa caaatcgatg aactcgttgt actcctggcc
     1081 acggacacgt tcgtgtcgcc agcctaaata caatggatcg tcaaggaggt ctcgattgtc
     1141 ggttccgacg tcgagcagta tgggcagggt cgtcgatgga tgtatcccgg cacacaaagt
     1201 gtaaagagaa agttttccaa ccgggatgcc catccctccc acgccgagat cgcccaatcc
     1261 gagaatgcgc tcaccgtcag tgaccacaat gacctcaact ctttccgcgg gagcattggc
     1321 aagcagcgaa gggatctcgt tacggtcagg atatgaaatg tagagacctc ggggcctgcg
     1381 gaatacatgg ctgtactgcc ggcagccctc gcctacagtc ggggtgta
//
LOCUS       DATCGC010000545         1318 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_175529, whole genome shotgun sequence.
ACCESSION   DATCGC010000545 DATCGC010000000
VERSION     DATCGC010000545.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1318)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1318
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175529"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1096..1263
                     /locus_tag="VIJ87_05155"
     CDS             1096..1263
                     /locus_tag="VIJ87_05155"
                     /inference="COORDINATES: protein motif:HMM:NF016828.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp family type IVb pilin"
                     /protein_id="HEY5443856.1"
                     /translation="MKRIKNFLNDESGMETLEYAVIAGLIALVAVAIYATSGTWKATL
                     QNRLQNAAAQN"
BASE COUNT          372 a          341 c          319 g          286 t
ORIGIN      
        1 actcactacc gaatttgatc gatgagaaga tgtctgtgtg aggaatgctc ctagtctcaa
       61 cgatgtactg ccccgttcga aggtgccacc aaaaatctgt gtccgtaatc ggttgagcgg
      121 cacctgcgaa aatgagaagc atgcacacga aaaccatcag gattcgtggg gatgcaaggt
      181 ctgaccttga aacgaccgtg agaagatttg gatcggattt cgtagggctg tgcgcttgag
      241 gcaccttcag tgaattcata gtagggtatt gactgattct caggtagcac aaatatgatg
      301 atacctatct aagaacaatg gggcacagct accagctgat cctcatagag ttcaaccaga
      361 ctccgagtta ggctattgag tcagccacac tctgaatttc gacaagctcg gcaagacgaa
      421 gggcgcgcgc taactggctc atcacgtgag cgccaaatcc gcgagtccag tacgtagtgc
      481 atggagatcg gtacagatac aggtccggtc cgctaggcat gagacgatcg cccaagagaa
      541 agagcaagta tagccataac gctgcaaagc ttagcaatat tcgcaccgcc gtggtctgca
      601 aagaatgcga cgaaacacaa gatcatttct ttccgtttct gctcgctagc gagcacttgc
      661 cttattctga atgcgtcaat ctattgaatt gggcagacaa gtaagttcca catccccacc
      721 gcactaccca tcaagcaaga ctcgacccct cacatcaata tccatcataa agaatcgctt
      781 ttggttagac ggccctgcaa caactgctcg cacatgagca gtgttgaacc tgcacaacag
      841 aactcttggc atcgggtcta atagtccact cgcaaagagc gctgacctta agtgaagcaa
      901 cgatggatgg ttgtcaacta tttatctcac caagccaacg ccgacctcac aatcttgaag
      961 attggcatag gcattgccca agacaagtat ccgaaattgt tgccgtgatc ggcaggagcg
     1021 ctcctctcag gatgcctggg atgacgccac aattccggtg taaaccaaat aagaacccca
     1081 ataaggagaa tgataatgaa gagaatcaag aactttctaa atgatgagag cggtatggaa
     1141 acgttggaat atgccgtcat cgccggcctc atcgcactcg ttgctgtagc catttacgcg
     1201 accagcggca cctggaaagc aaccctgcag aatcgcctgc aaaacgcggc agctcagaac
     1261 tagtcgcctc ctcataggct cgacgggctt acggccaaat gttggcccat ggcccgtc
//
LOCUS       DATCGC010000546         1771 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_175530, whole genome shotgun sequence.
ACCESSION   DATCGC010000546 DATCGC010000000
VERSION     DATCGC010000546.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1771)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1771)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1771
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175530"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1516)
                     /locus_tag="VIJ87_05160"
     CDS             complement(<1..1516)
                     /locus_tag="VIJ87_05160"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY5443857.1"
                     /translation="MTKRTSLVFNFFGAVLLLGIWTVVGFAQTSGEMSGLVTDPSGAA
                     VSGANVTITNKATGATRSITSNSEGLYSFPSLFPGVYELKVEQSGFKTSRIDNVKIEV
                     QQTARLDVSLEVGQVDEMVTINSSVALLNSENTTLGTVIENKIVTELPLNGRQYLNLV
                     ALSPNVNVLAPAAGQAGARQGGERAQQAISAGGQRIFFDYYTLDGVNNMDVNFNTYVA
                     LPSIDAIQEFKVQIGVYPAEYGHQSTQVNVLTKSGGNAFHGSAFEFHRNDALDAKQYQ
                     FTTAKPKNPFKWNDYGYEVDGPVRIPKLFNGKDKLFFMSNYEALRRRQSVLNTFTVPT
                     TKMFAGDFSELLPSTVIYDPNTGLPFQGNVIPTARLDPISVKFLKYYNSASTLGTNNF
                     AQTSNQPFDRDAFVVRIDYVESSKSQWLGRYNWGDEKTSTQGLNAAGTKVLTHYKQYT
                     ATNTRSLTSSLVNEARWGYTSFFNSLGTLSAGTNDVVSEIGIPNQSPGAPITWGI"
BASE COUNT          428 a          420 c          467 g          456 t
ORIGIN      
        1 gaatgcccca ggtgatcggt gcgccggggc tttggttcgg aatcccaatc tccgaaacaa
       61 catcatttgt tccggcgctt aacgtaccaa gagagttgaa gaaactcgta taaccccaac
      121 gagcttcatt cacgagtgaa gacgtaagac ttcgtgtgtt tgttgcggtg tactgtttat
      181 agtgagtcag gacctttgtg ccagccgcat taagaccttg agtagaggtt ttttcgtcgc
      241 cccagttata tcgtcccagc cactgcgact tcgacgactc aacgtagtcg attctgacta
      301 cgaatgcatc gcgatcaaaa ggctgattgc tggtctgcgc aaagttgtta gtgccgagag
      361 tgctggcaga attgtagtac ttcaagaact tcacagagat tggatccaga cgagcggtag
      421 gaatcacatt gccttggaaa ggtagtccag tgttcgggtc atagatgact gtcgagggta
      481 gtaactcgct gaagtcccct gcaaacatct tcgtggtggg aaccgtaaaa gtattcagga
      541 cactttgccg ccgacgcagt gcttcatagt tcgacatgaa aaatagtttg tcttttccgt
      601 tgaagagttt tggaatgcgc actggtccgt ctacttcata gccatagtca ttccacttga
      661 acgggttctt aggctttgca gtggtgaact gatactgctt agcgtcgagc gcgtcgttgc
      721 ggtgaaactc gaaggcggac ccatgaaaag cgttaccacc agatttcgtt agtacgttga
      781 cctgtgtgct ttgatgtccg tactcagccg ggtagacacc gatctgaact ttgaattcct
      841 ggatagcatc gattgaagga agagcaacat aagtattgaa gttgacgtcc atgttattga
      901 cgccgtcgag ggtgtagtaa tcaaagaaga tacgttggcc accggcggag atagcttgtt
      961 gagcgcgttc cccaccctgc cgagcaccag cttgacctgc cgcaggcgcc agcacattta
     1021 cgtttggcga aagcgcgacg agattcaggt actgtcgccc gttgagcggc aactccgtaa
     1081 cgatcttgtt ttcgatcaca gtgccgagag tcgtgttttc tgaattgagc aacgcgaccg
     1141 agctgttgat agtgaccatc tcgtcaacct gaccaacttc aagcgagacg tccagtcgag
     1201 cagtttgttg gacttcgatc ttgacgttat cgatgcgact ggtcttgaac ccggattgtt
     1261 ctactttcaa ttcataaacg ccgggaaaaa gtgatgggaa ggaataaagg ccttcgctat
     1321 ttgatgtgat gctgcgcgtc gcaccggttg ccttgttggt gatcgttacg ttggcgcctg
     1381 aaacggctgc gccggaggga tcggtaacca atccgctcat ctcaccacta gtttgagcaa
     1441 agccgacaac ggtccagatt ccaagcaaca agacggcgcc gaagaaattg aagactaagc
     1501 tagttctctt cgtcattact tcctcccagt tttcctctcg tttttgaaga acgttcggtg
     1561 gatctgtatc cgaggcagcc aacacagcga tgcaagcaac cgggacttgt tgacttccat
     1621 gcaggttcgg aattagttcc tgattaaaga cttgaagctg gaatgggctc ctcacgttga
     1681 tcaggagcaa agctttacgc ttcgagcatc ttgatctgca ctgaccctcg aaatcccgga
     1741 tacagtgagc gcaagggtag gaaatgaatg g
//
LOCUS       DATCGC010000547         1655 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_207298, whole genome shotgun sequence.
ACCESSION   DATCGC010000547 DATCGC010000000
VERSION     DATCGC010000547.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1655)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1655)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1655
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207298"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(247..687)
                     /locus_tag="VIJ87_05165"
     CDS             complement(247..687)
                     /locus_tag="VIJ87_05165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443858.1"
                     /translation="MASTEFVAVTWQPNQLLDEDTLDQISNNLIFLRNQMVDGKYMHL
                     TSGVTDTGIKLLCGRGLITPRNSDSATLRIHFASMFTTGTAPVVTTSVTSGNKVKIFH
                     TINGIGAFHPNHQGFEAKVNLYYDSAKKDKIKNTLCINWIAMGT"
     gene            complement(1059..1310)
                     /locus_tag="VIJ87_05170"
     CDS             complement(1059..1310)
                     /locus_tag="VIJ87_05170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443859.1"
                     /translation="MTETETNPFINQDELQQNFFKLELKLQAYRERVANYEDQDADRR
                     VQITLLGNENDRLKSRIEELENNVRELESVKEETEASDD"
     gene            complement(1352..>1655)
                     /locus_tag="VIJ87_05175"
     CDS             complement(1352..>1655)
                     /locus_tag="VIJ87_05175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443860.1"
                     /translation="LGLKSYTFQYKPSEGGPQDPRRYPGFIAEQGAEVGAELWVARQH
                     KIVRDKDGKVRDIVRDKNGEPVAFRTGDVTVAHNVLIKELFEEIDALKKQLKTIKG"
BASE COUNT          374 a          382 c          387 g          512 t
ORIGIN      
        1 ccaatttgga acgcgcaggt acttattaat ttgcttctgg caaatattac aaatccagcc
       61 gtgagcctca aacacatcga gcgcaacaat actatcgccc ttagcatata atgctcttct
      121 ctttgggctg tagtatttga ttttgcgtct agccacgtta gcctcttagg gctaattata
      181 tggcttatta aattataaaa ccaaatgtag tcgttcgact acattcacga atgtcgtcgt
      241 actacgtcac gtgcccattg caatccagtt gatgcacagg gtgttcttga ttttgtcctt
      301 cttagcagag tcgtagtata ggtttacctt ggcctcaaag ccttggtggt tagggtggaa
      361 tgctccaata ccattgatgg tgtggaatat ctttaccttg ttacccgagg ttaccgaggt
      421 ggtgaccacc ggagcggtac ccgtggtaaa catgctggcg aagtggattc gcagggtggc
      481 cgagtcggag ttacgtggcg tgattagtcc acgcccacat agcaacttaa taccggtatc
      541 ggtgacaccg gaggtcagat gcatgtattt gccgtcaacc atttggttac gcaagaatat
      601 taggttgttg ctaatctggt ccagggtgtc ttcgtctaga agttgattgg gttgccaggt
      661 tactgcaacg aactcggtgc tagccattta gcgggtttcc cttctcatgc aagttgattt
      721 cgtccaggga gacggttacc acgtcccagg tttggtatcc caaagcatta aggatatcgg
      781 ggttggtgac ctgtcttagt tccccttgta cgattaggta tattctaccg ctggcttggc
      841 tacaaagcaa actgccgttt ctgaacttta aaggtacccc gaccctcagc cgcttgacgg
      901 ctgggtggtc ttcggaggtt tcaatgactc ggtgaggatg ccacgaatcg aggattcgcc
      961 tggtattaat gggtagcctc tttacatcat taaagacgta gtaccagccc ctttcagtat
     1021 gtatgaaact accgggcggg tatgccgaga tttgaaagtc agtcgtcgct tgcttctgtt
     1081 tcttccttaa cactctctaa ctctctgaca ttgttttcaa gttcttcaat tctagactta
     1141 agtctatcat tctcattacc tagtagggta atctgaactc ttctatcagc atcttggtct
     1201 tcgtagttag caactctttc tctatatgct tgtagtttaa gttctagttt gaagaagttt
     1261 tgttgtagtt catcctgatt gataaagggg ttggtctctg tctctgtcat gattcaagtg
     1321 taacggagtc ggcgcaatct gtcaaccgag gtcatccttt aattgttttc agttgcttct
     1381 tgagggcgtc aatttcttcg aacaattcct tgatgagcac gttatgagcg accgtaacat
     1441 cgcccgtgcg gaaggcgaca ggttcaccat tcttgtctct aacaatatcc ctaaccttgc
     1501 cgtctttgtc tcgtacaatc ttgtgctgtc gggcaaccca caattctgca ccaacctcag
     1561 caccctgttc agcaatgaag ccaggatagc ggcgagggtc ttgtggtcca ccctctgacg
     1621 gcttatactg gaaagtatat gactttagac ctagc
//
LOCUS       DATCGC010000548         1499 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_11182, whole genome shotgun sequence.
ACCESSION   DATCGC010000548 DATCGC010000000
VERSION     DATCGC010000548.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1499)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1499)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1499
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11182"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1499
                     /locus_tag="VIJ87_05180"
     CDS             <1..>1499
                     /locus_tag="VIJ87_05180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443861.1"
                     /translation="NQMRTFLEYHPTVLHDLHESVPYLYTMTGTGPYNAWLDPLAIDE
                     FQLLAYHEIEEMTKRGVPGVWTHGFYDGWAPNYMLYIATGGNSIGRFYETFGNGGADT
                     RERTLTANDTNRVWYRPNPPFPRVMWSMRNNINMQQSALLFAMNFVANNTERFLNNFY
                     LKSKRSVDKASNEGPAAYIIPGDTPRPVEAADMVNLMRLRGIEIQTADKEFTVKDQKY
                     PAGSYIVRMDQPYSRMADMLLDTQYYNVSDPAPYDDTGWTMGAMRNVKTVRVVDKSVL
                     SVPMTLLKSDAKVTGKLTGGASPVAFVINHNTDNTLATLRFRLKDVKMGAAEDSFKVG
                     DQQFNTGSFIVKMEGNPADSRTRLEAAVKELGLKGVGVDKLPEVKTHELAVPRIGIVH
                     TWTNTQNDGWYRIEFDRLQIPYQYISVQVLRDTPRLRDKFDVLIFPPVGGSAQTIVNG
                     MPRRGDAIPWKASEVTPNFASSPDQTDDMRGGMMVTGVANLQKFIEEGGL"
BASE COUNT          358 a          393 c          411 g          337 t
ORIGIN      
        1 aatcagatgc gtacgttcct cgagtatcac ccgactgtcc ttcacgattt gcacgagtcc
       61 gttccctatc tctacacaat gacgggcacc ggtccgtaca acgcctggct cgatccgttg
      121 gcaatcgatg agtttcaatt actcgcctat cacgaaatcg aagagatgac gaagcgtggt
      181 gttcccggtg tttggacaca cggcttctat gatggttggg cgccaaacta catgctttac
      241 attgcgacgg ggggtaactc gattggacgc ttctatgaaa cgtttggcaa cggtggcgcc
      301 gacacacgtg aacgaacgtt aacggccaac gatacaaatc gcgtctggta tcggccgaat
      361 ccgccattcc cgcgtgtaat gtggtcgatg cgcaataaca tcaacatgca gcagtcagct
      421 ttgctgtttg cgatgaactt tgttgccaac aataccgagc gctttctgaa taacttttat
      481 ctgaagagca aacgctcagt tgacaaggct tcgaacgagg gcccagccgc gtacatcatt
      541 cccggcgata ctccgcgtcc ggttgaagcg gctgacatgg tcaacttgat gcggctgcga
      601 ggaattgaaa tacaaactgc tgacaaagag ttcaccgtca aggatcagaa gtatccggcc
      661 ggctcataca tcgtgcgcat ggatcaaccg tactcgcgta tggccgatat gttgctcgat
      721 acgcagtatt acaacgtcag cgatcctgcg ccgtacgacg acaccggttg gacgatgggt
      781 gcaatgcgaa acgtgaaaac agttcgcgtt gtcgacaaga gtgttttgtc cgtcccgatg
      841 accttgttga agagcgatgc gaaggttact ggcaagttga ctggcggcgc ttcgccggtc
      901 gcgttcgtta tcaatcacaa tactgacaac acgctcgcga ctcttcgctt ccgcctcaaa
      961 gatgtgaaga tgggcgctgc cgaagattcg ttcaaggttg gagaccaaca gttcaatacc
     1021 ggctctttca tagttaagat ggaaggcaat cccgccgatt cgagaactcg tcttgaagct
     1081 gcggtcaaag agttggggct gaaaggagtt ggcgtcgaca aactgccgga agtaaagacc
     1141 cacgaacttg cggttccccg aatcggtatc gttcacacgt ggacaaacac acagaacgac
     1201 ggttggtatc gaatcgagtt tgatcgacta cagatccctt accagtacat ttcggttcag
     1261 gtgctgcgcg acactcctcg cctgcgcgac aagttcgacg tgctgatctt cccgccggtc
     1321 ggcggttcgg cacagacgat cgtgaacggc atgccgcgcc ggggagatgc gatcccgtgg
     1381 aaagcatcgg aagtgacacc gaatttcgcc tcgtcgccgg atcaaactga cgacatgcgc
     1441 ggtgggatga tggttaccgg cgtcgcgaat cttcagaagt tcatcgaaga gggcgggct
//
LOCUS       DATCGC010000549         1545 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_474252, whole genome shotgun sequence.
ACCESSION   DATCGC010000549 DATCGC010000000
VERSION     DATCGC010000549.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1545
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_474252"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..986
                     /locus_tag="VIJ87_05185"
     CDS             <1..986
                     /locus_tag="VIJ87_05185"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY5443862.1"
                     /translation="VTGVSGSGKSTLVEDILYPALARHLYGSLAEPGRYTALDGLEHI
                     DKVIEIDQSPIGRTPRSNPATYTGLFTPLRELYAMLPESRERGYKAGRFSFNVKGGRC
                     EACEGDGMKRIEMNFLPDVYVLCDVCRGARYNRETMAVKYKGKSIADLLNTTVEEALP
                     ILENVPQINQKIQTLLDVGLGYIKLGQSATTLSGGEAQRIKLAKELSKRATGRTIYIL
                     DEPTTGLHFADVHKLLDVLQRLVSLGNTVIVIEHNLDVIKSADYIIDLGPEGGEHGGR
                     VVVAGTPEEVARSRRSHTGHALRPLLNGRLSRNGNGEGNGNGHARVDIDPA"
     gene            1031..>1545
                     /locus_tag="VIJ87_05190"
     CDS             1031..>1545
                     /locus_tag="VIJ87_05190"
                     /inference="COORDINATES: protein motif:HMM:NF044507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443863.1"
                     /translation="MSQYDDTFRPIDLQGVKTYPLASRSSKVNLNDFAHPITKESSVE
                     DFLSSLPNILAVQSLRQLAVRIHRARELGKPIVWGIGGHVIKTGLAPLLIDLMKRGFV
                     TAVAANGSVLVHDAEIAMVGSTSEDVDATLSEGAFGGAEETGQLLNAAAKDGAADSIG
                     LGEAMGRALLR"
BASE COUNT          384 a          416 c          394 g          351 t
ORIGIN      
        1 tagtcaccgg tgtatccgga tcaggcaaat caacactcgt cgaagacatt ctctatcccg
       61 cactcgcacg tcacctatac ggttcgctgg ccgaaccagg tcgatacaca gcacttgatg
      121 gcctggaaca tatcgacaaa gtcatcgaga tcgatcaatc accaatcggt cgaacgccgc
      181 gttcaaaccc tgcgacatac accggactgt tcactccact tcgcgagctc tatgcgatgc
      241 tgccagaatc tcgtgaacgt ggttacaaag ccggacgctt ctctttcaac gtcaaaggtg
      301 gccgctgcga ggcttgcgaa ggcgatggca tgaagcgtat tgagatgaac tttcttccag
      361 acgtttacgt gctgtgcgat gtttgtcggg gagccaggta caaccgggaa accatggcgg
      421 ttaagtacaa gggcaagtcg attgctgacc tcttgaatac caccgtagag gaagcattgc
      481 cgatactcga gaatgtgccg cagataaatc aaaaaatcca aacgttgctc gacgtcggac
      541 ttggctacat caaacttgga cagtctgcta ccacgctctc aggcggtgag gcacaacgca
      601 tcaagctcgc aaaagaactg tcgaagcgag ctaccggcag aacgatctat atccttgatg
      661 aaccaacaac cggtctacac tttgccgatg ttcataaact gctcgacgta cttcaacgac
      721 tagtctcgct gggaaatacc gtcattgtga tcgagcacaa tctcgatgtg atcaagtcag
      781 ccgactacat tatcgatctt ggtcctgaag gcggagagca cggcggccgc gtagtggttg
      841 cgggcacgcc tgaggaagtt gccaggtcac gacgttccca taccggtcat gcgttaagac
      901 ccctcctcaa tggccgtcta tctcggaatg gaaatggcga ggggaatggt aatggccacg
      961 cacgagtcga catcgatcct gcgtgatata ctccgccgcg tacctatcct gaccagcaga
     1021 tcctttttac atgtctcagt acgacgacac ctttcgccca atcgatctcc agggcgttaa
     1081 gacttatccg cttgcttctc gttcaagcaa agtcaatctc aacgactttg cccatcccat
     1141 cactaaagag tcatctgtcg aagattttct aagttcactc ccaaacatcc tggcagtaca
     1201 aagtcttcga caactggccg tgcgaattca tcgagcgcgt gaacttggta aaccaatcgt
     1261 ttggggaatc ggcggccacg tcattaaaac cgggctggct cctttgctca tcgatctcat
     1321 gaaacgtggt ttcgtcaccg ctgttgcagc taacggatca gtgctcgtgc acgatgcgga
     1381 gattgcaatg gtggggtcca cttcagagga cgtggatgcc actttatctg agggtgcgtt
     1441 tggtggcgca gaagaaactg gtcaactgct taatgcagca gcgaaggatg gcgccgcaga
     1501 ctcaatcgga ctcggcgaag caatgggacg agccttgttg aggtt
//
LOCUS       DATCGC010000550         1209 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_474280, whole genome shotgun sequence.
ACCESSION   DATCGC010000550 DATCGC010000000
VERSION     DATCGC010000550.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1209)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1209)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1209
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_474280"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1189)
                     /locus_tag="VIJ87_05195"
     CDS             complement(<1..1189)
                     /locus_tag="VIJ87_05195"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S16 family serine protease"
                     /protein_id="HEY5443864.1"
                     /translation="MGRSIARALGRQFERLSLGGVRDEAELRGHRRTYIGALPGRIIQ
                     SIRRAGVNNPVMMLDEIDKLGNDYRGDPAAALLEILDPQQNNSFRDHYLDLPFDLSKI
                     LFIATANQLGPIPTPLRDRMETIRLAGYSDREKLEIAKRYLVPRQIQENGLNNAQLKI
                     EADALELIATRYTREAGVRQLERNIGSVARKVALKIAQAQAEAVTVNETSVRELLGPP
                     RFYPEQARKELPAGVATGMAWTEMGGEVLFIEATLLPGGRGLTITGQLGEVMQESARA
                     AQSYLWSHGAEFGIDPEMFKSYGVHLHVPAGAIPKDGPSAGVTITSALASLYTGRRVR
                     PDTAMTGEITLSGLVFPIGGVKEKVLAAYRAGIRRILLPSRNEADVDDIPEDVRNDLQ
                     IVFV"
BASE COUNT          270 a          358 c          309 g          272 t
ORIGIN      
        1 acacaaacac gatttgcaga tcgttgcgaa cgtcctccgg gatgtcgtcg acgtcagctt
       61 cgtttcgact cggcagcaag atgcgtcgaa tgcctgctcg ataggcagcc aacactttct
      121 ctttcacgcc accgatcgga aacaccaaac ccgacaaggt gatctcacca gtcattgctg
      181 tgtcaggtct gactcttcgt cctgtgtaga gcgatgcgag tgcagaagtg atggtcactc
      241 cggcgctcgg tccgtctttc ggaattgctc ccgccggaac gtggaggtga acaccgtagc
      301 tcttgaacat ctccggatcg attccaaact ccgcaccgtg tgaccagaga tacgattgag
      361 cggcacgcgc tgactcctgc atcacttcac caagttgacc ggtgattgtc agcccgcgac
      421 caccgggcaa caaggtggct tcgatgaaca gcacctcacc acccatctca gtccacgcca
      481 ttccagttgc cacaccagcc ggcaactctt ttctcgcctg ttccggatag aaacgtggtg
      541 gaccgagaag ttcacgaaca ctcgtctcat taacggtgac ggcctcggct tgagcctggg
      601 caatcttcag cgccactttg cgggcaacgc tgccaatgtt tcgttcgagt tgccggacac
      661 ctgcctcacg cgtgtatcgg gtagcaatca attcgagtgc atccgcttcg atcttcagct
      721 gggcattgtt tagaccgttt tcctggatct gacgcggaac taaatagcgt tttgcgatct
      781 cgagtttctc gcgatcgctg tagccggcca atcgaatcgt ctccatgcga tcgcgcaagg
      841 gagtcggaat cggtcccagc tgattagccg tagcaataaa caaaatcttc gacaggtcaa
      901 acggcaagtc gagatagtga tctctgaacg agttgttctg ttgcggatcg agaatctcca
      961 acaacgcagc tgcagggtcg ccccggtagt catttcccag cttgtcgatc tcgtcgagca
     1021 tcatgacggg attgttaacc ccggcacgtc gaatcgattg aatgattcga ccaggcagtg
     1081 cgccgatata ggtacgacga tgtccgcgta gttcggcttc atcccgaaca ccaccgagtg
     1141 acaatcgctc aaactggcgt ccgagtgcgc gagcaatcga acgacccaat gaagtcttcc
     1201 caacacccg
//
LOCUS       DATCGC010000551         3116 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_373653, whole genome shotgun sequence.
ACCESSION   DATCGC010000551 DATCGC010000000
VERSION     DATCGC010000551.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3116
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_373653"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..776
                     /locus_tag="VIJ87_05200"
     CDS             <1..776
                     /locus_tag="VIJ87_05200"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5443865.1"
                     /translation="GVFMSMMLTEWGVGVVPAILLCILVSMVLSLTHGLLITRLNMQP
                     FIVTLCGLLFYRGLARFITNDETKGFGTVAGLDFLRYVANGNLFGIPMPFVLLILIAL
                     VTWVLLHRSVYGRYLFATGRNAEAARYAGINTKQIITAAYVIAGALTAISGIIIAFYT
                     NSVSPANHGNAYELYGIAAAVLGGCSLRGGEGSIVGILIGTALLQVLRNLVNLLGIPS
                     SLDFAVMGAVILIGVMADQILTERRNRRQVTQMRSATKS"
     gene            898..1941
                     /gene="galT"
                     /locus_tag="VIJ87_05205"
     CDS             898..1941
                     /gene="galT"
                     /locus_tag="VIJ87_05205"
                     /EC_number="2.7.7.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008108 - UDP-glucose:hexose-1-phosphate
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0006012 - galactose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-phosphate uridylyltransferase"
                     /protein_id="HEY5443866.1"
                     /translation="MASTGTGIWEERWHPLREEWVIVAAHRQDRPWSGETVPHEEQVV
                     PTYVDDCYLCPGNSRVSGAVNPGYDGVFVFDNDHPCVGPNAPTELSTPSGIYQNRPAQ
                     GIARVVCYSPRHDLSLAQLDPAEIVALLSAWQQQYRDLGARADVNHVLVFENKGEVVG
                     VSNPHPHCQIYATNFVFKTIETEAAASARHFAKTGRPLFQEIIAAEQRDGLRVISENE
                     STIAFLPYFARYAYEVYVAPKQTHMSLAGLSDGELEGFASVLKETLVRFDNLWQMPFP
                     YVMALHQAPTDGADHRGFHFHIEFHPPLRKPNLLKYLAGPEIGGGNFLSDTAPEQKAS
                     ELRAVSNLHYTAK"
     gene            1938..2963
                     /locus_tag="VIJ87_05210"
     CDS             1938..2963
                     /locus_tag="VIJ87_05210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443867.1"
                     /translation="MSEAADSLESLIEPLKRLHKNIRQAVVESCERSAIEDLSSIARE
                     EEGDTIYAVDRVSEELLIEFFEREVATIAPVVLVAEGLPSGKVILPHGSVENDAKWRI
                     IVDPIDGTRGLMYQKRSAWILTGVAPNVGAGTSLRDIEFAIQTEIPLVKQHLSDCAWS
                     LRGHGVEAERFNRVTGESFTITPRPSAAKTIAHGYAQVARFFPGARDELAAIDEEIVL
                     GALGPVQPDKAHCFEDQYTSSGGQLYELMSGHDRFTADLRPLMNQVLARRGVVMGICC
                     HPYDVCTELIARESGVIVTNEYGKQLDAELSVEPNVTWVGYANEAIQQQIEPLLSEAL
                     KRRSLLN"
BASE COUNT          733 a          775 c          869 g          739 t
ORIGIN      
        1 ttggtgtgtt catgtcgatg atgctgactg aatggggggt gggagtcgtt ccggcgattc
       61 tactttgcat tctggtgtcg atggttctct cactaactca cggactgtta attactcgac
      121 tgaacatgca gccatttatt gttaccttat gtggtctgtt gttttatcga gggttggctc
      181 gattcataac caacgatgaa acgaagggat tcggcacggt agcaggcctc gacttcctgc
      241 gttatgtagc caacggaaac ctctttggta ttccaatgcc gtttgtgttg ttaattttaa
      301 tcgccctcgt tacctgggtc ttgcttcatc gttccgtgta cgggcgctat ctctttgcga
      361 ccgggcgaaa tgcagaagca gctcgttacg ccggtataaa cactaaacag atcatcactg
      421 cagcctatgt tattgcaggc gctctgacag cgatctccgg catcattatc gcgttctaca
      481 caaactcagt ttcgccggcg aatcacggaa acgcttacga actctacgga atcgccgcgg
      541 ccgtacttgg cggctgctct ctcagaggcg gcgagggttc aatcgtcggc atactgatcg
      601 gcaccgcgtt gcttcaggtg ctcaggaatc ttgttaacct gctcggtatt ccaagttcgt
      661 tggacttcgc agtgatgggc gctgtgattc ttatcggcgt gatggctgat caaatcctga
      721 ctgaacgaag gaatcgcagg caggttacgc agatgagaag cgcgactaag agttagttct
      781 tctgtgaaac ctctgtgtcc actgtggtga ccttctgatg gccttcacgg ctaatcacag
      841 agacacagag gagacagagg ttcacagaga gatgtcgaaa acgaactgaa caagaaattg
      901 gcgtcaacag gtacagggat ttgggaagaa cgctggcacc cgctccgcga agagtgggtt
      961 attgttgccg cgcaccgaca agaccgacca tggagcggtg aaacggttcc tcacgaagag
     1021 caagtcgttc caacctacgt tgacgattgt tacctgtgtc cgggtaattc gcgcgttagc
     1081 ggggcggtca acccgggtta tgacggggta tttgtatttg ataacgatca tccctgcgtt
     1141 ggacccaatg ctccaaccga actaagcacg ccgagcggca tttaccaaaa ccgacccgcc
     1201 cagggaatcg cgcgcgttgt gtgttactca cctcgccatg acctttctct cgctcaactc
     1261 gatccagctg aaatcgtcgc gttgttatct gcctggcaac agcagtacag agatttgggt
     1321 gcacgagcgg acgttaacca cgtgctcgtg tttgaaaaca aaggtgaagt agtcggagtt
     1381 tcaaatccac acccgcactg ccagatttac gcgacgaact ttgtttttaa aacaattgag
     1441 acggaagccg ctgccagtgc tcgacacttc gccaaaaccg gacgtccgtt gttccaggag
     1501 atcattgcag cagagcaacg cgacgggttg cgcgttatca gcgagaacga gtcgacaatc
     1561 gcgttccttc cctacttcgc tcgttacgca tacgaagtct acgtggcgcc aaaacaaacg
     1621 cacatgagtc ttgcggggct gagtgacggg gaacttgaag gctttgcgag tgtgctgaaa
     1681 gagacgctgg tcaggtttga taatctgtgg cagatgccgt ttccttacgt catggcttta
     1741 caccaggctc cgacagatgg cgcggatcat cgaggctttc acttccatat cgaatttcat
     1801 ccgccgttac gaaaacccaa cctgctcaag tatcttgccg gaccagagat cggaggcgga
     1861 aatttcttaa gcgacactgc accggaacaa aaagcctctg agcttcgtgc agtttccaac
     1921 ctccactaca cagcgaaatg agcgaagcag ctgacagcct tgaatcgttg atcgagccgc
     1981 tgaagcgact ccacaagaat attcgacaag ctgtagttga atcttgtgag cgatcggcga
     2041 ttgaggatct ttcgtccatc gctcgcgagg aagagggcga cacgatctac gctgtcgatc
     2101 gcgttagtga agagctcttg atcgaattct tcgagcgtga ggtggcaacg attgctcccg
     2161 tcgtcctggt tgcggaaggt ttgccatcgg gcaaagtaat actgccgcac gggtctgttg
     2221 agaacgacgc caagtggcga ataattgtcg atcctatcga cggtacgcgt ggattgatgt
     2281 atcagaagcg aagtgcctgg atactcaccg gtgtcgcgcc taacgtcggc gcggggactt
     2341 cgttacgaga tatcgagttt gcgatccaaa ctgagatccc gctggtgaaa cagcatctat
     2401 ctgactgtgc ctggagtctg cgaggacacg gagtcgaagc ggaaagattt aatcgggtaa
     2461 cgggcgagtc ttttacgatt actcccagac catcggcggc aaaaacaatc gcacacggtt
     2521 acgcgcaagt tgcccggttc tttccaggcg ctcgtgatga gcttgcggca attgacgaag
     2581 agattgttct gggcgcgctc gggccagtgc aaccggacaa ggctcactgc ttcgaagatc
     2641 aatacacatc gtctggtggg caactttatg aattgatgag tgggcatgat cggttcacgg
     2701 ccgatctgcg accgttaatg aaccaggtgc tcgcgcgacg tggcgtcgta atggggatct
     2761 gttgccaccc gtatgacgtt tgcacggagc tgattgccag ggagtcggga gtgatcgtga
     2821 cgaatgagta cggaaagcag ttggatgcag agttatccgt ggaaccgaac gtcacatggg
     2881 ttggctatgc gaatgaagcg atacagcaac aaattgaacc gctcttgagt gaggcgttga
     2941 agcgtcgtag ccttttaaac taagtggttc ttaacacgcg aagcgggcaa cgaacataaa
     3001 gcctggggcg caagccccag gttaatgcgg tcgacatcaa agcccgcgaa gcgggcgaca
     3061 gccgaatcgc aatccgttgc actcgtggtt tacgttgcac cgatctagat cggatt
//
LOCUS       DATCGC010000552         1372 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_76234, whole genome shotgun sequence.
ACCESSION   DATCGC010000552 DATCGC010000000
VERSION     DATCGC010000552.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1372)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1372)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1372
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76234"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1051
                     /locus_tag="VIJ87_05215"
     rRNA            <1..1051
                     /locus_tag="VIJ87_05215"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            1172..1288
                     /gene="rrf"
                     /locus_tag="VIJ87_05220"
     rRNA            1172..1288
                     /gene="rrf"
                     /locus_tag="VIJ87_05220"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
BASE COUNT          317 a          319 c          401 g          335 t
ORIGIN      
        1 gagcggttag tggtagcaat actgcgaagc tgtgaattga agccccggtg aacggcggcc
       61 gtaactataa cggtcctaag gtagcgaaat tccttgtcgg gtaagttccg acctgcacga
      121 atggtgtaac gatcctgcga ctgtcttaac gtgtgactca gcgaatttgt agttccggtg
      181 aagatgccgg atgcccgcac ttagacggaa agaccccgtg cacctttact ataccctagc
      241 aatgatttat gggactgcat gcgcagcata tgtgggaggc tttgaaccat ggcttttggg
      301 ctgtggggag ccaacggtga gataccacac ttgttgttct gtgaatctaa cctagttccc
      361 ttatcgggat cagggacatt gctaggcggg tagtttgact ggggcggtcg cctcctaaat
      421 tgtaacggag gcgctcaaag gttacctcag gctgtttgga aatcagccgt cgaatgtaaa
      481 ggtataaggt agcttgactg cgagaccaac aagtcgagca ggtgggaaac caggacttag
      541 tgatccggtg gttctgtatg gaagggccat cgctcaacgg ataaaaggta cgccggggat
      601 aacaggctga tccgggccaa gagttcacat cgacgcctgg gtttggcacc tcgatgtcgg
      661 ctcatcgcat cctggggctg tagaaggtcc caagggttag gctgttcgcc tattaaagcg
      721 gtacgtgagc tgggttcaga acgtcgcgag acagttcggt ccctatctag tgtgggcgca
      781 ggagatttga gtgggtctga ccttagtacg agaggactgg gttggacgga cctctagtgt
      841 accagtcgtc atgccaatgg cgtggctggg tagctatgtc cggttgagat aaacgctgaa
      901 tgcatctaag cgtgaagctc gccacaagat gagatctccc gggagcaatc ccctaaagac
      961 ccgtggcaga ccaccacgtt gataggcggg atgtgtaagc gtagtaatac gtttagctga
     1021 cctgtactaa tcggtcgtga ggcttgatca tttgaaatca tcatctctta agtaatttag
     1081 aagcgctctg aattgcccat caatattgaa ttgtcaacgg cctcgccgtt gcagagcacg
     1141 ggagtcttcc ctgctctgta attcttaagt ttccggtgac cgtaccgaga gggtcacacc
     1201 cgttcccatc ccgaacacgg aagttaagcc tctctgggcc gatggtactg cgcgagcaat
     1261 tgtgtgggag actaggtcgt tgccgggatt aaataaaccc cgatgagccg caaggcgcgt
     1321 cggggttttt cattttctga tgatttccca ctgcaattcc gtcgtcccaa ag
//
LOCUS       DATCGC010000553         1400 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_207374, whole genome shotgun sequence.
ACCESSION   DATCGC010000553 DATCGC010000000
VERSION     DATCGC010000553.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1400)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1400)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1400
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207374"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1084
                     /locus_tag="VIJ87_05225"
     CDS             <1..1084
                     /locus_tag="VIJ87_05225"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY5443868.1"
                     /translation="AEAPEQLAGNRVRINLAESSVRNRSLQDLGLKLDKMPLCYGDHL
                     GYPNLRKLIAEQGDGLSEDDVLITAGASTALFIVATSLLGKGDHIVVARPNYATNIET
                     PRAIGCEISYLELTHENQYRVDIDELGLMLRPETKFVSLTSPHNPSGTMLDRTDLERV
                     IGLITSRGCRLLLDETYREMTFGETLPVAASLNPRVISASSLSKTYGLPGIRIGWLVC
                     QDKELMYLFLSAKEQINICGSVIDEAIAFEALSQRPQWLPENNRRIKQAFTVVKDWMA
                     HEELLEWIEPQGSCICFPRIRSDLTLDVDAFYRCLNDKYGVFVGPGHWFERSRRHFRI
                     GYGYPTLDQLKDGLDGISKALRDASG"
     gene            1143..1334
                     /locus_tag="VIJ87_05230"
     CDS             1143..1334
                     /locus_tag="VIJ87_05230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443869.1"
                     /translation="MNSPASGLRVASLIFAVVALAHLVRLLAQAQVTIGSQTIPVWLS
                     APLAVIPALLSLWMWKLSK"
BASE COUNT          325 a          354 c          374 g          347 t
ORIGIN      
        1 agcggaggcg cccgagcaac ttgccgggaa ccgcgtcaga atcaatctgg ccgaaagctc
       61 tgttcgtaac cgctctttgc aggatctcgg cctgaaactg gataagatgc cactttgtta
      121 tggcgaccat cttggctatc cgaacttgcg taagctgatc gcggaacaag gtgatgggtt
      181 gtccgaagat gacgtcctga tcacagccgg cgcatccacg gctctcttta tcgtcgcaac
      241 ttcattgtta gggaaaggcg accatatcgt agtggcgcgc cccaactatg cgacgaacat
      301 agaaacacca agagcgattg gctgtgaaat cagttatctg gagctaactc acgagaacca
      361 gtatcgcgtc gatatcgatg aactcgggtt gatgcttcgg ccggaaacaa agtttgtaag
      421 tctcacttct ccacataacc catccgggac catgcttgac cggacggacc tggaaagagt
      481 cattggcttg ataacttcaa ggggttgccg cctgctcctt gatgaaactt accgggaaat
      541 gacttttggc gagaccttac cggtggccgc atcgctgaat ccgagagtta tcagcgcgtc
      601 atctctttcc aagacatacg ggctaccggg cattcgcatc ggctggctgg tgtgtcagga
      661 caaagagctg atgtatctgt ttcttagcgc caaggaacag atcaacattt gcggcagtgt
      721 catcgatgaa gcgattgcct ttgaagccct ctcgcaacgg ccccaatggt tgccggaaaa
      781 taaccgacgc atcaaacagg ctttcacagt ggtgaaggat tggatggcac acgaggaact
      841 gttggaatgg attgaaccgc agggcagttg tatttgtttt ccccgcatca ggagtgatct
      901 cacgctggat gttgatgcat tttatcgctg tctgaatgat aaatacggcg tgttcgtcgg
      961 acctggccac tggttcgaaa gatcgcggcg ccattttcgg attggatatg gatatcctac
     1021 ccttgatcaa cttaaggacg gcctggacgg gatttcaaaa gcgctccgag atgcctcagg
     1081 atgatccttc ggactcaata agatagtttg tctgagaagc cacggcgtat tagaatgaga
     1141 tcatgaattc gcctgcatcc ggattgcgag ttgcatcgct gatttttgcg gttgtagccc
     1201 tggcccacct cgtccgcctc cttgcccagg cacaggtaac tattggcagt cagacaatcc
     1261 cagtctggct cagcgcgcct ttggctgtaa tcccagctct gttgagtctt tggatgtgga
     1321 agctctcgaa gtagacttag cgtcctagtc ggtctccagt aattaggcgg cctactattc
     1381 cttttgcgcc agcgctagaa
//
LOCUS       DATCGC010000554         2045 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_76254, whole genome shotgun sequence.
ACCESSION   DATCGC010000554 DATCGC010000000
VERSION     DATCGC010000554.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2045)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2045)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2045
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76254"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1210)
                     /gene="dacB"
                     /locus_tag="VIJ87_05235"
     CDS             complement(<1..1210)
                     /gene="dacB"
                     /locus_tag="VIJ87_05235"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: protein motif:HMM:NF014200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004175 - endopeptidase activity [Evidence
                     IEA];
                     GO_function: GO:0009002 - serine-type D-Ala-D-Ala
                     carboxypeptidase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine
                     carboxypeptidase/D-alanyl-D-alanine-endopeptidase"
                     /protein_id="HEY5443870.1"
                     /translation="MLAPNNVNKAPSVLVKAAFLLVLLLLIAGCSQTPPSARVASTEN
                     EPAPVETASPITVQIDPDLAKTLDSLLSNSEFSQARWGVAVVSLRDGKLIYEHNGDQL
                     FTPASNMKVYTTAVALDLLGADYRWRTSVYSDNPPDSTGTINGDLVLYGRGAPDLIAT
                     NRGENSNSIEELAKSLAAKGVKRIQGSVIGDESYFRGDATGDGWLSNDLQWYFGAEAS
                     ALTINANSIEVSITSASKMTEQPKVEVNDFDGYIQTTNNLATVESGEPLRIGVKREAT
                     DNNVIVWGQYPIGARGYGASLSVHQPSLWAAKMFLRTLRSHGISVDGEARYRDSRVAE
                     KNRFNPEGKQELAFVTGRSLGEIIRITNKLSVNLYAEILLRTLGRERAPMISDDKSGG
                     RERGDDEHGRE"
     gene            complement(1188..>2045)
                     /locus_tag="VIJ87_05240"
     CDS             complement(1188..>2045)
                     /locus_tag="VIJ87_05240"
                     /inference="COORDINATES: protein motif:HMM:NF013257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HEY5443871.1"
                     /translation="GVDRVALRDGPKLVSIGRIVKLVKAVRKSKYDLVIDLHSLSETN
                     VLGLLSGASHRLYAHRPNRSLDFLGNFQPRPPLQDLTRHAVDRYLDVLKPLNINDASR
                     SPHLRTNKKADADVEALLKKENAHSNALLVGLFFGAGHVVRRWPMERYAELADYLIRN
                     QSVRVVVFAGPEERPFVSEAKKVFPPTTIFFDRLTIPQLAAAQARLTLFISNDTGPMH
                     IAAAVGTSVVVMLDRPTPHSFTPVGDQHRVICGADINDITVEQVYKVAHELLASNRTE
                     RIFARSEQR"
BASE COUNT          477 a          547 c          526 g          495 t
ORIGIN      
        1 attccctgcc atgttcgtcg tctccacgtt cccgtccacc tgacttgtcg tctgagatca
       61 ttggcgcacg ctcccgtcca agcgtccgca ggaggatctc ggcgtaaagg tttacgctga
      121 gcttgttggt aatcctgatg atttcgccga gcgatctacc ggtgacaaaa gcaagttctt
      181 gtttaccttc cggattaaac cggttcttct cggcaacacg tgaatcccga taccgggctt
      241 cgccgtcgac gctgataccg tgacttctga gcgtgcggag gaacatcttt gctgcccaca
      301 acgatggttg gtgcaccgac agactcgctc cgtagccgcg cgcgccgatg ggatactgac
      361 cccagacaat tacgttgttg tccgtagctt cgcgtttgac cccaatccgt aaaggttcgc
      421 cgctttcaac ggtcgccagg ttgttcgtcg tttggatata gccatcgaag tcgttcacct
      481 caaccttagg ttgctcggtc atcttcgacg cagaagtaat actgacctcg attgagttgg
      541 cgttgattgt caacgcgctg gcctctgctc cgaaatacca ctggaggtca ttcgatagcc
      601 aaccatcacc ggttgcgtca ccacgaaagt agctttcatc ccctatcaca cttccctgga
      661 tgcgtttgac tcctttcgca gcaagtgact tcgcaagttc ttcgattgaa ttggaattct
      721 cccctctatt tgttgcgatt agatcgggcg caccgcgtcc gtaaagtaca aggtcaccat
      781 taatcgtgcc tgtactgtcg ggtgggttgt cagaataaac cgaggttcgc cagcggtagt
      841 cggcgcccag caaatccaac gctaccgcgg ttgtgtacac tttcatgttt gaggctggcg
      901 tgaacaactg atctccattg tgttcgtaga tcagctttcc atctcgcaag gaaaccacgg
      961 cgactcccca acgagcctga gaaaactctg agttcgataa gagagaatcc agggttttgg
     1021 ccaggtcggg atcaatctga accgtgatcg gcgacgcagt ctcaaccggc gcaggttcat
     1081 tttcagttga ggcgaccctg gcggaaggcg gagtttgtga acagcccgcg ataagtaaaa
     1141 gcagaaccaa caggaaagcg gcttttacta gcactgaagg agccttgtta acgttgttcg
     1201 gagcgagcaa aaattctctc agtcctattg ctggcgagta actcatgcgc caccttgtaa
     1261 acctgttcaa cggtaatgtc gttgatatca gcaccgcata tcactcgatg ctgatctccg
     1321 accggggtaa agctgtgggg agtcggacga tcaagcatca caactacaga agttccaact
     1381 gcggctgcga tatgcatcgg ccccgtgtcg tttgaaataa aaagagtcag gcgagcctga
     1441 gcagcggcca gttgagggat agtcaaacga tcaaagaaga tcgttgttgg ggggaaaact
     1501 ttctttgcct ctgaaacaaa gggacgctcc tctggacctg caaagactac aacgcgcaca
     1561 ctttgattcc gaatcaggta gtcagcaagt tctgcataac gctccatcgg ccaacgacgc
     1621 acaacgtgac ctgcaccaaa gaacagaccg accagaaggg cgtttgaatg agcgttctcc
     1681 ttttttaaga gagcctccac gtcggcatcc gcttttttgt ttgtgcgtag atgcggagat
     1741 cggctggcgt cgttgatgtt gagtggcttc aatacgtcga gataccgatc aaccgcatgc
     1801 ctggtcaggt cctgtaaagg aggtcgcggt tgaaagtttc cgagaaaatc cagcgaccta
     1861 tttgggcgat gtgcatacag cctgtgagat gcgcctgaca aaagaccaag cacgttcgtt
     1921 tccgacagac tgtgaaggtc gataaccaga tcatatttcg acttccgaac agctttgacg
     1981 agcttcacaa tccgtccgat cgagacaagc tttgggccat ctctcaaggc cactcggtca
     2041 acgcc
//
LOCUS       DATCGC010000555         1133 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_241234, whole genome shotgun sequence.
ACCESSION   DATCGC010000555 DATCGC010000000
VERSION     DATCGC010000555.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1133
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_241234"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..922)
                     /locus_tag="VIJ87_05245"
     CDS             complement(<1..922)
                     /locus_tag="VIJ87_05245"
                     /inference="COORDINATES: protein motif:HMM:NF042863.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="terminase TerL endonuclease subunit"
                     /protein_id="HEY5443872.1"
                     /translation="MNKVVKKRLVTKQYLIVARGAAKSMYASCIQNFFLNVDTSTTHQ
                     ITTAPTMKQADEVVSPIRTSITRARGPLFKFLTEGSLQNTTGSRALRVKLAATKKGIE
                     NFLTGSLLEIRPMAINKLQGLRPKISTIDEWLSGDLREDVVGAVEQGASKLDDYLIIA
                     TSSEGTVRNGSGDTIKMELADILKGEYLAPHVSIWHYKLDEIEEVNDPSTWLKANPNL
                     GLTVSYETYHLDVERAEKAPASRNDILAKRFGIPMEGYTYFFTYEETIPHRKKEFWNL
                     PCSLGMDASQGDDFWAFTFLFPLSRGEFGIK"
BASE COUNT          258 a          292 c          306 g          277 t
ORIGIN      
        1 ccttgattcc gaactcacct cgactcagcg ggaagaggaa tgtgaacgcc cagaaatcgt
       61 caccctggga agcgtccatc ccgagagaac acggaagatt ccagaactcc ttcttcctat
      121 ggggaatagt ctcctcataa gtgaagaagt atgtgtagcc ctccatagga atgccgaatc
      181 gcttcgccag aatgtcattt cgagatgctg gtgctttttc ggcccgctcc acgtcaaggt
      241 gatacgtctc gtaggatacc gtgagtccaa ggttcggatt tgctttgagc cacgtagagg
      301 gatcgttgac ttcctcgatc tcgtcaagtt tgtagtgcca gatcgaaacg tgtggtgcta
      361 ggtactcgcc cttgaggatg tcagcgagtt ccattttgat cgtgtcgcct gaaccgtttc
      421 gaacagtacc ttcggagctt gtggcgatga tcagatagtc gtccaacttg gacgctccct
      481 gctcaacagc tcctaccaca tcttctcgaa ggtctcccga cagccactca tcgatggtag
      541 agatcttagg gcgcaaccct tgcagcttat tgatggccat cgggcgaatc tcaagcagcg
      601 aaccggtaag gaagttctca attcccttct tagtcgctgc cagtttgaca cgaagcgctc
      661 gagaacccgt tgtgttctgc aatgagccct ctgtgaggaa cttgaacaaa ggcccgcgtg
      721 cgcgcgtgat ggaggtacgg ataggactga cgacctcgtc ggcctgcttc atcgtgggtg
      781 ctgtagtgat ttgatgcgtc gtcgatgtgt ctacattcag gaagaagttc tgaatgcaag
      841 acgcgtacat cgacttagca gcacctcgag ccacgatcag gtactgtttg gtaacaaggc
      901 gtttcttgac aaccttgttc acgtaccggc cgccgtggcc gtcctttgaa ggctgataca
      961 cacttcgctc gacaaagtag taccagccaa agatctgctc tgcccagagt ttgaatgaga
     1021 agagcagatg aagatcacga ccgtccgtga gagtgagctc gttctcgcag taaaggatga
     1081 aaccgtcgac ggccttgtcg tcgtagtaga tgttggggtt cgcgatgagc gca
//
LOCUS       DATCGC010000556         1045 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_41495, whole genome shotgun sequence.
ACCESSION   DATCGC010000556 DATCGC010000000
VERSION     DATCGC010000556.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1045)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1045)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1045
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41495"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..149)
                     /locus_tag="VIJ87_05250"
                     /pseudo
     CDS             complement(1..149)
                     /locus_tag="VIJ87_05250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011636340.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(365..796)
                     /locus_tag="VIJ87_05255"
                     /pseudo
     CDS             complement(365..796)
                     /locus_tag="VIJ87_05255"
                     /inference="COORDINATES: protein motif:HMM:NF013698.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          216 a          296 c          268 g          265 t
ORIGIN      
        1 ccgctgcctt tcttcttgcc gttgcttaac ttctggctcc ccacacagcg acagtacgag
       61 gcgtagtccc ccaccgtggg aaatctcttg atctctccgg tctccagcat gatggtaagc
      121 gccagaatct gcccgattcc cggtacggtc taagaaagcc aaacgccgct ctcagtttaa
      181 tcctatcggt gacggtcctc tctaagatat cgatttgtcc atcggcgcac tggatcatgg
      241 ctaggttagc tttgaccccc agggccaagt ctgagttggg tagcaggtcg tccacctgct
      301 ctgcatcgag cgtcttgatt cgattcgacc ggatcgaact cccggtgtta cgtgtgatca
      361 gattctgtag gctcaacaga ttggcggttc gttggcgcac catctggccg cgcttgcgca
      421 gcagatcgcg taccgctcgc tcctctttcg gatagatgta gccctgcggc aatactccca
      481 atcgcagaat gtgggcaagc cagcgggcgt cggaatgatc gtcggtgtat ttgagccctt
      541 cgtactgttg gatcgcggca gtgttggcca ggtgaatacg atgtccctgg tccatcaggc
      601 cgtcgaccag ccaataccag ttgaaggtcg actccacgac aatgccttgg agcacgtcct
      661 gatagcctga gagctgctgg gcgattaacg gcagatcgtt gggcagtcgc ttttgataaa
      721 ccacctggtc tcgttcatcg atcaacaccg tcacgttatt attcgagtgc agatcgattg
      781 ctccgtacaa cttcatctcc gtctcctcct tcgacactaa agtttgattg ctcaaactta
      841 cggcctactc gaggaaccgg ctagatgatt atcaagtctg gagttgagta aacctgccgg
      901 gtcgccatag gcgacaaggt caactgtata cacaaagtaa cgctaactat gtaactccag
      961 atttgacccg atagctgtgt cgaccccatg gctgtgcctt gaggttactt tccgcgtcta
     1021 gccggtaatc gctgcgaagc tctga
//
LOCUS       DATCGC010000557         1659 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_440904, whole genome shotgun sequence.
ACCESSION   DATCGC010000557 DATCGC010000000
VERSION     DATCGC010000557.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1659)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1659)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1659
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_440904"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1494
                     /locus_tag="VIJ87_05260"
     CDS             <1..1494
                     /locus_tag="VIJ87_05260"
                     /inference="COORDINATES: protein motif:HMM:TIGR00225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY5443873.1"
                     /translation="NYIDGKKLDYNSIFKSSISGMLSVLDPHSTYFDPIEYASFRTEQ
                     RSEYFGIGATIEDLREGSDVNTFIRATFNDSPAARAGLRYGDRITAVDGQSMKGKTYP
                     EVRKFLLGPRGTTVKVTVEHPGNHQSETVSIIRDAVSLPSIAQSYMLRPGVGYVAMTG
                     GFNLTTADEFEQSLKQLHSKGMNMLVLDLRGNRGGLLIQAVRVANNFLQHGQMIVSQK
                     GRFRDSSQAYAAVNDNPDNVPIVVLVNGDTASAAEILAGALQDHDRGLIVGETTFGKG
                     LVQYPFQLDYDSALLLTIAKYFTPSGRLIQRDYSNGGFYNYYFPGGLAADKNPQANPQ
                     NGPESHTDMGRAVYGGGGISPDEVVKPGTISAAERHLRDIAFAFSLELVSGRVPGFES
                     YKVQRAIEFDHDLEAEDFPVTDPLFKEFKKFATSKAIFKVTAEQLDRSRTFAERQLRY
                     NVLSAAYGFRVATQVFNDADPQVARAVDAMPRARELALAASRVKPRG"
BASE COUNT          385 a          417 c          435 g          422 t
ORIGIN      
        1 aactatatcg acggtaagaa actcgattac aactcgatct tcaagtcgtc catcagcgga
       61 atgcttagcg ttttggatcc acactcgact tactttgacc cgattgagta tgcgtcgttc
      121 cgtactgagc aacgttctga atacttcggt atcggagcca ccatcgagga tttgcgcgaa
      181 ggctcagacg ttaatacttt cattcgcgca accttcaacg attcgcctgc tgcacgtgct
      241 ggacttcgct atggtgaccg gattactgct gtcgatggcc agtcgatgaa aggtaagacc
      301 tatccggaag ttcgaaagtt cctactcgga ccgcgcggta cgacagtgaa agtgacagtc
      361 gaacatcctg gcaatcatca gagtgaaact gtcagcatca ttcgcgatgc agtctcgtta
      421 ccttcaattg ctcagtcgta catgctgcgg cccggggttg gttacgtggc gatgactggt
      481 ggtttcaact taaccacggc ggatgaattc gaacagtcgc tcaaacagct ccacagcaaa
      541 ggcatgaaca tgttggtgct ggatctgcgc ggcaaccgtg gcggactttt gatccaggca
      601 gttcgcgtcg caaataattt tctacagcat ggacagatga tcgtttcgca gaagggtcgg
      661 ttccgcgata gttcacaggc gtacgccgcg gttaacgaca accctgacaa tgtaccgatc
      721 gtcgttctcg tcaatggcga caccgcctcg gctgctgaaa ttcttgccgg cgcactccag
      781 gatcacgatc gcggactgat tgtaggcgaa acaacttttg gaaaaggact cgtacagtat
      841 ccattccaat tggattacga ctccgcattg ttgttgacca tcgcgaagta tttcacgcct
      901 tcgggtcgtt tgattcagcg tgactattca aacggtggtt tctacaacta ctacttcccg
      961 ggtggccttg ctgcagacaa gaacccgcaa gccaatccac agaacggacc tgagagccat
     1021 acggacatgg gtcgcgctgt ttatggtggt ggcggtattt cgccggacga agtcgtcaag
     1081 ccgggaacca ttagtgcggc tgaacgacac ctgcgcgaca tcgcgtttgc tttttcactc
     1141 gagttagtct caggacgtgt tccggggttt gagtcctaca aggtccaacg cgcaattgaa
     1201 tttgatcatg atctggaagc agaggatttt ccggtaacag atccgctgtt caaagagttc
     1261 aagaaatttg cgaccagcaa ggcgatcttc aaagttaccg ccgagcaact ggatcgctca
     1321 cgaacattcg ccgagaggca gttgcgctac aacgtcctgt cagctgcgta cggatttcgc
     1381 gtggctacgc aagttttcaa tgatgctgat ccacaagttg caagagccgt tgacgcaatg
     1441 ccacgcgctc gtgagttggc gctggcagcc agcagagtga aaccgagggg ataggtttta
     1501 gctgtctctc ctcttaacga caaagacctg gtttcggcca ggtctttttt tgtggtaatt
     1561 ggtctttgct ctttggtctt tgctctttgg tttttggttt ttggttttta ccgcgaagcg
     1621 gttagacaag accaaaggcc caaggccaaa gacctaagt
//
LOCUS       DATCGC010000558         1001 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_474368, whole genome shotgun sequence.
ACCESSION   DATCGC010000558 DATCGC010000000
VERSION     DATCGC010000558.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1001
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_474368"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..900
                     /locus_tag="VIJ87_05265"
     CDS             <1..900
                     /locus_tag="VIJ87_05265"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEY5443874.1"
                     /translation="LTNPPQRKTFQHGEIFMGEGVFDTGKLLKGADLQGPDMNSDEGS
                     AHERVEALIDELTKRTAELEEANRELRRVSHYRSLFLTRMSHELRTPLTSILGFSEIL
                     LDHEQLTDTQRRFCQKVQDSGFQLQASLNQLVDLSRIEAGETEVFLQEFSLREALRES
                     CAAVARMAQKQQVHVEYEVAPELTTIVTDQGKFRQVLFNFIAWAVSRSPSGDTVNISV
                     TTTDPNLLRIKIADTGTPIAEPAHVFDPEENTPSREPNINELGIIIGRKLIELMAGDI
                     TLQNRDGVGLEAIIQLPARPLKG"
BASE COUNT          264 a          230 c          280 g          227 t
ORIGIN      
        1 ctaacgaatc ccccacaaag aaagactttc caacatggtg agatctttat gggtgaaggc
       61 gtatttgata caggcaagct gctcaaggga gctgatcttc aggggccaga tatgaacagt
      121 gacgagggga gcgctcatga acgagtggaa gctctcattg atgaattaac aaaacgaaca
      181 gctgaactcg aggaagcaaa tcgtgagctg cgtcgcgtct cgcactacag atctttgttt
      241 ctgacgcgaa tgtcacatga actgcggaca ccgctgacgt ctattcttgg ttttagtgag
      301 atcctgttag accatgagca actgaccgac acgcagcgcc ggttctgtca aaaggttcag
      361 gactccggct ttcagttgca ggcgagtctg aatcaactcg tcgacctgtc gagaatcgaa
      421 gcgggtgaaa ctgaagtctt tctacaggag ttttcacttc gggaagcctt gcgcgaatcc
      481 tgtgcggcgg tggctcgcat ggcccagaag cagcaagtgc acgttgagta cgaagtggcg
      541 ccggagctta ctacgatagt tactgatcaa gggaagtttc ggcaggttct ttttaacttt
      601 atcgcgtggg cagtcagtcg cagcccctcg ggcgacacgg tgaatatctc agttacaaca
      661 accgacccaa acctgttgag aatcaagatc gccgatacag gcacgccaat cgcggaaccc
      721 gctcacgttt ttgatcccga agagaacacg ccttcacgtg agccaaacat caatgaattg
      781 ggaatcataa tcggcaggaa gttgattgag ctgatggccg gagatattac tttgcagaat
      841 cgggatggtg ttggcctgga agctatcatt caattaccgg cgcgaccact gaagggataa
      901 acacggagga tggaagagac gataattcgg gagtgtacga cgattgagga gtttgacagc
      961 tgtgttgact tgcagcgaga ggccttcgga cttccggata t
//
LOCUS       DATCGC010000559         1131 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_140903, whole genome shotgun sequence.
ACCESSION   DATCGC010000559 DATCGC010000000
VERSION     DATCGC010000559.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1131)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1131)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1131
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140903"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1131
                     /locus_tag="VIJ87_05270"
     rRNA            <1..>1131
                     /locus_tag="VIJ87_05270"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          315 a          255 c          350 g          211 t
ORIGIN      
        1 gcaaggttaa gtcgcaagac gaagccgtag cgaaagcgag tccgaatagg gcgtccagtc
       61 ggatgacgta gacccgaaac ccggcgatct atccatggcc aggatgaagg gcgggtaaca
      121 ccgcctggag gtccgaacac actgcagttg aaaatgcagg tgatgagctg tggatcggag
      181 tgaaaggcta atcaagctgg gttatagctg gttctcgccg aaacatattt aggtatggcg
      241 tccgaggaat ttctgctgcg gaggtaaagc actggatggg ctaggggtcc taccagatta
      301 ccaaacccaa ccaaactctg aatgccgcag acagcgaccc aggcagacag gctatgagag
      361 ctaagttcca tggccaaaag ggaaagagcc cagaccgtca gctaaggtcc ccaaatcagt
      421 gctaagtggg aaaggatgtg gaggcacaca gacagccagg aggttggctt agaagcagcc
      481 atcctttaaa gaaagcgtaa tagctcactg gtcaagtgaa tctgcgccga aaatgtaacg
      541 gggctcaagc attgtaccga agctacggat tgggactgga cttcggtcca gtctccagtg
      601 gtaggcgagc attctctcga ctgcgaaggt caacggtaac gatggctgga gtggagagaa
      661 gagcttatgc aggattgagt agcgataaaa caggtgagaa acctgttcgc cgtaagccca
      721 agggttcctg ggtcaagtta atcttcccag ggttagtcgg tccctaagcc gaggcagaaa
      781 tgcgtaggtg atgggaagca ggttaatagt cctgcaccac gatggatggt ttctacagga
      841 gggacggaga aaggcggtcg agccagatat tggatactgg ttcaagcccg taggagggct
      901 ctctaggagg cctagtgcca caaacggaga gtcaactctg agaggtgatg aggagagcgc
      961 tttgcgctca cgaactgagt gatcctaggc tcccgagaaa agctccgacg gagttaaccg
     1021 ctgtggtgtc cgtaccgcaa accaactcag gtgggcggga agaatattcc aaggcgcttg
     1081 agagaaccct ccttaaggaa ctcggcaaaa tgacaccgta acttcgggag a
//
LOCUS       DATCGC010000560         1118 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_273891, whole genome shotgun sequence.
ACCESSION   DATCGC010000560 DATCGC010000000
VERSION     DATCGC010000560.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1118
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_273891"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..317
                     /locus_tag="VIJ87_05275"
     CDS             <1..317
                     /locus_tag="VIJ87_05275"
                     /inference="COORDINATES: protein motif:HMM:NF024953.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HEY5443875.1"
                     /translation="AGGIKLVMSSEALAKMAPPNAIQLPGPFMKFIGVCEVLGALGLV
                     LPGLTKIRRGLTPLAAVGLVIIMIGAVVITIMGLGVAMAISPLITGILCAVVAYGRRD
                     WR"
     gene            469..921
                     /locus_tag="VIJ87_05280"
     CDS             469..921
                     /locus_tag="VIJ87_05280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443876.1"
                     /translation="MHPKRFNWPLLTGFLLSLFAFISYFLIFVWFPTTRDFPWANLLL
                     FVGATALLLLGLRRAFTEERRKRSKIFASIITTFGVLVFALFAFNFFVFARWIPPSKG
                     APQVGQKAPDFTLNDTNHKQVSLTELLSIPINGKAPKGVLLVFYRGYW"
BASE COUNT          253 a          285 c          274 g          306 t
ORIGIN      
        1 tcgccggagg aatcaaattg gtgatgtcgt cggaagcatt ggccaaaatg gcacctccaa
       61 atgcaattca gctacccgga ccattcatga agttcattgg tgtttgcgaa gtgcttggtg
      121 cgttgggact agttctgcca ggtctaacca agattcgtcg cggactcact cccttggccg
      181 cagttggatt agtaatcatc atgattggag cggtggtgat tacgatcatg gggctgggag
      241 tcgcgatggc aatttcaccc ctgatcacgg gaatactttg cgcagtcgtc gcttatggtc
      301 gacgcgactg gcggtgattt gtttctttgc gttatctctg tggttctctg agttctcttt
      361 gtctctgtgg tgagcctggt tgttaggtct aaaatcccac cacagataca cagagaactc
      421 ggagaaaacg aaaacacttt cggcatagaa agaccgaggt cgcatcacat gcacccaaag
      481 cgattcaact ggccattgct cacgggcttc ttactgagtc tcttcgcgtt tatcagttac
      541 ttcttgatct tcgtttggtt tccaacgacg cgcgattttc cctgggcaaa cttactgttg
      601 tttgttggcg caaccgcatt gttgttgctt ggactccgtc gggcgttcac agaggaacga
      661 cgaaagcggt cgaagatatt cgcctcaatc atcacgacct ttggcgtcct ggtattcgcg
      721 ctctttgcct tcaacttctt tgttttcgct cgttggatac ctccatctaa aggcgctcca
      781 caagttggtc agaaggcgcc cgatttcacc ctcaacgata ccaatcacaa acaagtttct
      841 cttaccgaac ttctatcgat accaataaac ggaaaggcgc caaagggtgt cttgttggtt
      901 ttttatcgcg gctactggtg accatcctgc aactccgagt tacggggcat tgagaaaaac
      961 ctgacagcat tatcggacgt aggcattcgc ccagttgcaa tcagcgtcga tacaccggaa
     1021 gagtcaagca acctcaccca gaaagcggga tacacatttc cgtttctctc cgattccaac
     1081 gttgaagtaa ttcggcgcta cgatctggtc cacgcagg
//
LOCUS       DATCGC010000561         1702 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_11423, whole genome shotgun sequence.
ACCESSION   DATCGC010000561 DATCGC010000000
VERSION     DATCGC010000561.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1702)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1702)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1702
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11423"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..453)
                     /locus_tag="VIJ87_05285"
     CDS             complement(<1..453)
                     /locus_tag="VIJ87_05285"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEY5443877.1"
                     /translation="MAKLIITTAALLGLSISLSAQSGRRKPPVASPAPTPVATPNPVP
                     TPAEPKPPPVTAEKNQDYRCTDDGTLAHLMDDPASVKGFQPKEVDARAEILDRPDAKY
                     TEEARHIGVQGIVVLKVLLGANGEIDRIRVVRRLPYGLTENAIRAACHI"
     gene            complement(584..883)
                     /locus_tag="VIJ87_05290"
     CDS             complement(584..883)
                     /locus_tag="VIJ87_05290"
                     /inference="COORDINATES: protein motif:HMM:NF024585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEY5443878.1"
                     /translation="MTYVVVELCVDCKYTDCAAVCPVEAFHELTDRLYINADTCIDCD
                     ACVPECPVEAIFADTNVPEQYTHWTQINIDEAPKWPIISQKIPALHGPTCTGPEE"
     gene            complement(1028..>1702)
                     /locus_tag="VIJ87_05295"
     CDS             complement(1028..>1702)
                     /locus_tag="VIJ87_05295"
                     /inference="COORDINATES: protein motif:HMM:NF022441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head GIN domain-containing protein"
                     /protein_id="HEY5443879.1"
                     /translation="LAVVTIGCKHGMNPGVKGSGKRETQKRDVQAFTSISSQGAFNIE
                     VVAQKSQSVEIEGDDNILPLITTEVSNNVLRIKSTKGFSVSEPVAIRIAVPDLAGLNV
                     SGAGKIEIAGLKNDKFEIDCDGAPTIKVSGVTKVIDIDTNGAAKIDTHNLHASKGVVD
                     SKGVSKIDVDVKDELDVTISGPSTVTYEGDPTINKTIHGPGKVEKRESEGAWEIRIAD
                     FEFRIS"
BASE COUNT          385 a          422 c          431 g          464 t
ORIGIN      
        1 aatgtggcag gctgcgcgta tcgcattttc cgtcaatcca tacggtagcc tacgcacaac
       61 ccgaatccgg tcgatttcgc cgttggcgcc cagcagcact ttaagaacaa caattccctg
      121 aacgcctatg tggcgtgcct cctcggtgta tttggcatcg ggacgatcga gaatctcggc
      181 ccgggcgtcc acttcttttg gttgaaagcc tttgacgctt gccgggtcat ccatgagatg
      241 cgcaagagtg ccatcgtcag tacaacggta gtcctgattc ttttcggcgg taaccggagg
      301 cggttttggc tctgcgggtg ttggcactgg gttaggcgta gccacgggag ttggcgctgg
      361 tgacgctacg ggaggttttc gtcgtccaga ttgggcagaa agcgaaatac tgagaccaag
      421 aagtgccgca gttgtgatta ttaactttgc catcggcttt cggtggtgaa gatcaatctg
      481 ctgagtccaa gtttaccgaa gaagactttt catcttcaaa cgaaaagcct gcccttcgaa
      541 agggacaggc ttctgaacct cagcagacca gtatccgcga gtattactct tccggccctg
      601 tacaagttgg accgtgcaat gcgggaatct tctggctgat gattggccat tttggagctt
      661 cgtcaatatt gatctgggtc cagtgtgtat attgctcagg cacattcgtg tccgcgaaga
      721 tcgcttcaac cgggcactct ggaacgcagg catcgcaatc gatacaagta tcggcgttga
      781 tgtaaagacg atcagtcagt tcatgaaatg cttcaacggg acaaacagcg gcgcagtcgg
      841 tgtacttgca atcgacgcat aattcaacaa caacataggt cattggggaa gtaagctcct
      901 ttcgataatg gcaaatagtt attcaccaac acgtgtaatg tcaacaagaa aaatttcaaa
      961 tcgcgacttg cggaaacgaa tgtgtttgag gttgaacgcg gctgggctaa ctcttgtgct
     1021 gcgcgattta cgaaattcga aattcgaaat ctgcaattct aatttcccaa gcgccttcgc
     1081 tttctcgctt ctctacctta cccggaccat gaattgtctt attgatcgtg gggtcacctt
     1141 cgtacgtaac cgttgaagga ccggagatcg ttacgtccag ttcgtctttt acgtcaacat
     1201 cgatcttcga aacgcccttg ctgtcaacta cgcctttgga agcatgaaga ttgtgcgtgt
     1261 cgatctttgc tgctccgttt gtgtcgatgt cgataacttt cgtaaccccg gataccttga
     1321 ttgttggagc tccatcacaa tcaatttcaa acttgtcgtt cttgagtccg gcgatttcta
     1381 tctttcctgc gcctgaaaca tttagaccag caagatctgg aacagcgata cgaatcgcca
     1441 ccggctcgct gaccgaaaag cctttcgtgc tcttgatgcg caagacgttg ttggaaactt
     1501 cggtggtaat cagcggcagg atgttgtcgt cgccttcaat ttcgacactc tgggatttct
     1561 gagctacgac ctcaatattg aatgctccct ggctggaaat cgaggtgaac gcttgaacgt
     1621 cgcgcttttg tgtttcgcgt tttcctgatc ccttgacccc gggattcatg ccgtgtttgc
     1681 agccgattgt gacaactgcc ag
//
LOCUS       DATCGC010000562         1182 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_11436, whole genome shotgun sequence.
ACCESSION   DATCGC010000562 DATCGC010000000
VERSION     DATCGC010000562.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1182)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1182)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1182
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11436"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1163)
                     /locus_tag="VIJ87_05300"
     CDS             complement(<1..1163)
                     /locus_tag="VIJ87_05300"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY5443880.1"
                     /translation="MGSEFLTVINQLRNLPTLNAVILFDDEAQATRDFTKVEATADVT
                     LDDEAIIIYTSGTTGKPKGCLLTHGNVVANARQISQWLGFNESDRLLTMMPLFHMNAV
                     SVTTMSALYAGGSSVVSPKFSASRFWQIVSDYKITSFGSVATMLSMLLTTYSEGVPAG
                     LQTEQLRFAMCGSAPVPAETIKRFEETFHCLVIEGYGLSESTCRSTFNPPDENRRAGS
                     CGLPIGNEMRVVDDDDTEVADGQLGEIVLRGDNVLKGYYKNPEATAVAFRNGWFHTGD
                     IGYRDSEGFYFIVDRKSDMIIRGGENIYPREIDEVLYQHPAVSAAAVVGVPDDLYGEE
                     VAGFVVLRDGGEASERELIEFCKARLADYKCPKTIRFVKDIPKGPTGKLLKREL"
BASE COUNT          309 a          335 c          263 g          275 t
ORIGIN      
        1 agctcgcgct tcaacaactt tccagtcgga cctttgggaa tgtctttcac gaagcgaatc
       61 gtcttaggac atttgtaatc agcaagacgc gctttacaga attcaattaa ctctcgctca
      121 gacgcttcac ctccgtcgcg caagacaacg aagccagcca cttcttcgcc gtacaaatca
      181 tccggtactc caacgacagc cgcggccgat actgctggat gttgatatag aacctcgtcg
      241 atctcacgcg ggtaaatgtt ctcgcctccg cgaatgatca tgtcggactt ccgatcgact
      301 atgaagtaga agccttccga atcgcgatac ccaatgtcgc ccgtatgaaa ccacccattt
      361 cgaaaagcaa ccgcggtagc ttcggggttc ttgtagtagc ctttcaacac gttgtcgcct
      421 cgcagaacga tctcgcccaa ctggccatcg gcaacttccg tgtcgtcgtc atcaacgacg
      481 cgcatctcat ttccaatcgg aagtccgcat gaccccgccc gacgattttc gtcaggagga
      541 ttgaatgtcg aacgacatgt cgattcagac aatccatatc cttcaatcac caaacaatga
      601 aacgtttcct cgaagcgctt gattgtctcg gctggaactg gagccgaacc acacatcgca
      661 aagcgcagtt gctcagtctg caatcctgcc ggaacacctt ccgaatacgt cgtcaacagc
      721 atcgacaaca tcgtcgcgac agatccgaat gaagtgattt tataatcaga aacaatctgc
      781 caaaaacggg acgcggaaaa cttaggactg actacagacg agccgcccgc gtagagtgcc
      841 gacatcgttg tgacagacac cgcgttcata tgaaacaacg gcatcatggt taaaagtctg
      901 tctgattcat taaagcccaa ccactgactt atctgacgtg cgttcgcaac aacgttgccg
      961 tgggttaaca aacagccttt gggtttacct gttgtcccgg aggtgtagat gatgatcgct
     1021 tcgtcgtcta acgtgacatc ggccgtagcc tcaaccttcg tgaagtctcg agttgcttga
     1081 gcttcgtcat caaacaggat gacagcattc aaggtcggaa gattgcgcaa ctgattaatt
     1141 acagtcagaa attctgaacc caccagcaat gccctcgctt cg
//
LOCUS       DATCGC010000563         1956 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_474468, whole genome shotgun sequence.
ACCESSION   DATCGC010000563 DATCGC010000000
VERSION     DATCGC010000563.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1956)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1956)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1956
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_474468"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(122..>1956)
                     /locus_tag="VIJ87_05305"
     CDS             complement(122..>1956)
                     /locus_tag="VIJ87_05305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443881.1"
                     /translation="VKTADFDTEVQTFLEKELAAHLGAIASMNPPPDRVLGVPTTGEF
                     SWGTFMRSLAAYADSSGKRELAGRDIAKWVGQIGLVEARAGSKAFSQLYAALALRHFG
                     RDLKTNPLWLSLTPEEQKAWRSLLNPERFYDPKTNRVIDLPDNYLGVASRIASISYDL
                     GVSTDRAFLDRLLDRAAIQFTTGHLYADDSPPTGRYDRYSNEYARYIWEAAEMAGRKD
                     ILEKVRPSLKVQMQLWWDLVSEDGYGYNWGRSQGVVSYLDTPEIVGFLAEHAEFRPAP
                     LTEIAALYYQSWNYLHHDYNVNTHLLSLFAFGRGNYGYITREREWQQTTGFFGKLTNS
                     HAKIIQALKRESVAAFPAIPTLSAVNRFEYFRRAPEREAGVWVVRQGALRFALPITTG
                     PKPGLSDYLPAPHGLPGFAAPVEQSYPVLVPFVELADGRTVVATDGADSIEMTADGKS
                     LHARWTKWAVVGTKSGELADVGLTSEVVWRIDNATITREETLSSNQAVSLKRWQLVVP
                     SSYGQVQTEMSNGIRVDRFSAPAGTMVVQLSGMNFPVVTSIVASGNGALGKGVHGAIP
                     LHLIFEARNLKLENGKPLKYQLSLAVTTAAPANSGSQASGSGVK"
BASE COUNT          454 a          521 c          514 g          467 t
ORIGIN      
        1 tgcccttgtg cgtttccggt acgaaacaag tctgcggggt aattggattc tgtgctattt
       61 cctgactcat tgtttctcct caaccattaa tcaatcaatt tagtctgcgc gatcaagccc
      121 atcactttac gccggagccg ctggcttggc tacccgagtt cgcaggtgca gcggttgtta
      181 cagcgagcga gagttgatac ttgagcggct ttccattttc cagtttaaga tttcgtgcct
      241 caaagatcag gtgcaaagga atcgctccgt gaacaccttt cccgagcgct ccgttgcctg
      301 atgcaacgat agatgtgacg acgggaaagt tcattcctga cagctgcacg accattgttc
      361 cggccggagc agaaaaacga tccactcgta ttccattgct catctcggtt tgaacctgac
      421 cataactgct cggaactacc aactgccagc gcttgagact aacagcctga tttgaactca
      481 atgtttcttc gcgagtgatc gttgcattgt cgattcgcca tactacttca ctcgtcaaac
      541 caacatcagc tagctcgccc gattttgttc caaccacggc ccacttagtc cagcgcgcat
      601 gtaacgactt gccgtcagcg gtcatctcaa tcgagtcggc gccgtcagta gcgacaacgg
      661 tgcgaccatc tgcaagttcg acaaaaggta caagaactgg atagctctgc tcaacaggcg
      721 cagcaaaccc aggtaggccg tggggtgccg gcaagtagtc ggacagccca ggctttggcc
      781 ctgtggttat gggcaatgca aagcgaagtg caccttgtcg aacaacccag actcctgctt
      841 cacgctccgg tgctcgacgg aagtattcaa agcgattgac ggctgagaga gttggaatag
      901 ccgggaatgc cgcgacgctt tctcgcttca gcgcctgaat aatcttggcg tgtgaattcg
      961 tcagcttacc gaagaagccg gtcgtttgtt gccattcgcg ttcgcgcgtt atgtaaccgt
     1021 agttgcctcg accaaaagcg aagagcgaca ggagatgtgt gttgacgttg tagtcatggt
     1081 gcagataatt ccacgactga tagtagagcg cggcgatctc agtaagcggt gctggccgaa
     1141 actcagcatg ttcggcaaga aacccgacaa tctccggcgt atcgagataa ctaacgacgc
     1201 cctggcttcg tccccagttg taaccataac cgtcttccga aaccagatcc caccagagtt
     1261 gcatttgaac tttcagcgaa ggacgaactt tttcaagaat gtctttccgg cccgccatct
     1321 cggcggcttc ccaaatgtac cgggcatact cgttcgagta gcgatcatag cgtcctgttg
     1381 gcggcgaatc gtcagcgtaa agatgaccag tcgtgaattg aatagcggcg cgatcgagga
     1441 gcctgtcgag aaaagctcga tcagttgaaa cacccagatc gtaacttatg ctcgcgatgc
     1501 gcgaggccac acccaaatag ttgtcaggta gatcgatgac gcggtttgtt ttgggatcgt
     1561 agaagcgttc agggtttagc agtgaccgcc aggctttctg ttcttctggt gtgagactca
     1621 gccagagcgg attggtttta agatcgcgac caaaatggcg gagtgcaagt gcggcgtaga
     1681 gttgtgaaaa ggctttgcta ccggcgcggg cctcaactag tccgatctgg cccacccact
     1741 ttgcgatgtc gcgtccagca agttcgcgct tgccacttga gtctgcatac gccgcaagcg
     1801 atcgcatgaa cgttccccat gaaaactcac cggttgtggg aacgccaagg acacgatctg
     1861 gaggcggatt cattgaagcg atcgcaccca gatgcgctgc caattccttt tctaagaagg
     1921 tctgaacttc tgtgtcgaag tcagcagtct tgactt
//
LOCUS       DATCGC010000564         1195 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_41598, whole genome shotgun sequence.
ACCESSION   DATCGC010000564 DATCGC010000000
VERSION     DATCGC010000564.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1195
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41598"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..244)
                     /locus_tag="VIJ87_05310"
     CDS             complement(<1..244)
                     /locus_tag="VIJ87_05310"
                     /inference="COORDINATES: protein motif:HMM:NF012305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HEY5443882.1"
                     /translation="MATKLYVGNLSFRTTSEELREAFASVGTVESASVIEDRETGRSR
                     GFAFVEMATPEEATAAIEAFNGKDFGGRNLTVNEAKP"
     gene            617..>1195
                     /locus_tag="VIJ87_05315"
     CDS             617..>1195
                     /locus_tag="VIJ87_05315"
                     /inference="COORDINATES: protein motif:HMM:NF012407.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate/isopropylmalate family dehydrogenase"
                     /protein_id="HEY5443883.1"
                     /translation="MSQRIPITVANGDGIGPEIMAATLRILEAAEAPLEIETIDIGEK
                     VYLAGNSSGIEPSSWESLRRTKVFLKAPITTPQGGGYKSLNVTVRKVLGLYANVRPCV
                     SYHPFVETKHPVMDVVIVRENEEDLYAGIEHRQTNQVVQCLKLISRPGSEKIVRYAFE
                     YARRNNRKKVTCFTKDNIMKLTDGLFHKVFDEI"
BASE COUNT          290 a          317 c          309 g          279 t
ORIGIN      
        1 tcggcttggc ttcgttgacg gtcaaattgc gtccgccaaa gtccttgcca ttgaaagcct
       61 cgatggctgc tgttgcctct tcaggggttg ccatttccac gaaagcaaag ccgcgcgatc
      121 gtcctgtttc tcgatcttca atcaccgaag ctgattcgac tgttcctact gacgcgaaag
      181 cttcgcgcag ttcctcgctc gtagtacgaa acgagagatt tccgacatag agttttgtag
      241 ccatttaact atccttaatc tgaagggaag cgcgggcttg ctggaattcg ctgatccagt
      301 tcggggggga cgaccgatac tttcggcgag ctgcgacgaa cccgatgctc taaaaatact
      361 cgagagcggc ttctaactgg ttgacaactg cctcactctc attcagccga acctcgtcgc
      421 cttacgatca cggacaggcg caatcaccgt tgatgcgcga gagcaggtaa ctggtaggca
      481 aaagtatgca ggagcccttg gaaagggtca aggacaaatt tgacgtttca gccacagatt
      541 tcacagatta gccaaaatcg cagtaatccg tataatctct gcctcgttca gaaatcaccc
      601 acgaaaggtt tggaaaatgt cgcaacgtat ccctattact gtggccaatg gcgacggcat
      661 cgggcccgaa atcatggcgg ccacgcttcg cattctcgaa gctgccgaag ccccgctcga
      721 gattgagacc atcgatatcg gcgagaaagt ctatctcgcc ggcaactcgt cgggcatcga
      781 gccgagctct tgggaatcgt tgcgacgcac caaagtcttt cttaaggcgc ctatcaccac
      841 gccgcagggc ggtggctaca agagcttgaa tgtgaccgtt cgtaaagtgc tcggcctgta
      901 cgccaacgta cgtccttgcg tctcgtatca tccgtttgtc gagacgaagc atccggtgat
      961 ggacgttgtg attgtgcgtg agaacgaaga ggatctttac gcaggcatcg agcaccggca
     1021 aacgaaccag gtcgtgcagt gtttgaaact gatctcgcgt cctggatccg aaaagattgt
     1081 tcgttacgcg ttcgaatatg cgcgccggaa caaccgcaaa aaagtcacct gcttcacgaa
     1141 agacaacatc atgaagctga ctgacggtct ttttcataag gtctttgacg aaatt
//
LOCUS       DATCGC010000565         1032 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_273955, whole genome shotgun sequence.
ACCESSION   DATCGC010000565 DATCGC010000000
VERSION     DATCGC010000565.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1032
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_273955"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1032
                     /locus_tag="VIJ87_05320"
     rRNA            <1..>1032
                     /locus_tag="VIJ87_05320"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          308 a          203 c          293 g          228 t
ORIGIN      
        1 ctacgagtta ctcctcactg gcgaggttaa gttccttaat aacggagccg tagcgaaagc
       61 gagtccaaat agggcgttta gtcagtgggg gtagacgcga aactttgtga tctatccatg
      121 agcaggttga aggtgtggta acacacactg gaggaccgaa ctcataaacg ttgaaaagtt
      181 ttgagatgac ttgtggatag gggtgaaagg ccaatcaaac tgagagatag ctcgttctcc
      241 ccgaaatgtt tttaggaaca gcgtcgcatt ttagaagttt attagaggta gagctactga
      301 ttgggctagg gggcttcacc gcctaccaaa ccctgacaaa ctccgaatgg tgttaaatat
      361 ctccgggagt gaggctgcgg gcgctaaggt ccgtggccga gagggaaata acccagatta
      421 gcatctaagg tccctaatac gtagttaagt tgatcaaacg aggtagggct tctataacag
      481 ccaggatgtt tgcttggaag cagccatcca tttaaagagt gcgtaacagc tcactggtcg
      541 agaggccccg cacggaaaat aatcgggcat caaactacga accgaagctc tatgatgcac
      601 acttggtgtg tattcggtag gggagcattg aaactgcatt aaaggtgtac ggcgacgtat
      661 gctggagcgg tttcaaaaga aaatgtaggc ataagtaacg ataaatggag tgaaaaactc
      721 catcgccgaa agtctaaggg ttcctgatca acgttaatcg gatcagggtt agtcgggtcc
      781 ttaggagaac ccgaaagggg tatctgatgg aaagcagttt aatattactg cacctgctat
      841 acaatgaaag ggacgaagaa tgctagtcac ataagctgac ggaatagctg agccgagcct
      901 tcgggcaaag cgtagtggtg aaagttcttc caagaaaagc gagtatagcg gcccgtaccg
      961 caaaccgaca caggtagacg ggatgaatat tctaaggcgc tcgggtgagc cgtggagaag
     1021 gaactaggca aa
//
LOCUS       DATCGC010000566         3082 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_309518, whole genome shotgun sequence.
ACCESSION   DATCGC010000566 DATCGC010000000
VERSION     DATCGC010000566.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3082
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309518"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..776
                     /locus_tag="VIJ87_05325"
     CDS             <1..776
                     /locus_tag="VIJ87_05325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979455.1"
                     /note="back-translocating Elongation Factor EF4; binds to
                     the ribosome on the universally-conserved alpha-sarcin
                     loop; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HEY5443884.1"
                     /translation="GFLGLLHMEIVQERLEREFNLDLISTAPGVRYSVTTTDGVTADI
                     DSPAKMPDPGRIVKIEEPIIRAVILTPDEHLGGILPLLEEKRGVQKGFEYITSNRVML
                     TYELPLNEIVLDFYDRLKSVSRGYASLDYNLAGYWESDLVKLDVMVAGEAVDALSLIL
                     HRSTAQSKGRALAEKMKQLIPRQLFEVPIQAAIGNKVIARETVKALGKNVIAKCYGGD
                     ISRKRKLLEKQKEGKKRMKKVGRVEIPQEAFLAVLKVNE"
     gene            806..1990
                     /locus_tag="VIJ87_05330"
     CDS             806..1990
                     /locus_tag="VIJ87_05330"
                     /inference="COORDINATES: protein motif:HMM:NF026257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEY5443885.1"
                     /translation="MSAVPSIPETVNRAEHELLLCCLCPDQDSTVSDRIRELVQIEQD
                     WDYLFLLARRHGVTPLFYSRLQSNAASRVPSLDLQRLQKYFQENTARNVLLSAELCRL
                     ISLLAEDAIEAIPYKGPVLALFAYEDIGLRRFVDLDIMVRKEDATRAIEILLASGYEF
                     TKPLTESQLDVLLRTQHNVQLRRHKRQLIVELHWEVASHLFASSVQADELWQSLEPIS
                     LNGTDLRTLSAEDLMFSLCVHGSRHLWERLLWICDVGWIIARRKLNWSALLERARATH
                     SERIFLLGVHLAAKLLRVKLPDEVINQIEGDSQLDRLANVVIASLFNGTVHRPASTSE
                     IFRYNLRVRKTWPARMRYFRHMLNPTDRDLDAVALPRSLSFGYYLMRPIRLLFRANED
                     IQ"
     gene            2325..>3082
                     /locus_tag="VIJ87_05335"
     CDS             2325..>3082
                     /locus_tag="VIJ87_05335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443886.1"
                     /translation="MKVYLPLSRNLNFALLAIVIAIASNAAVGQETKPEGAKPATAKP
                     DQAKSQTPTDTEKPDFTLSVKTRPILNISLKAEKVKLVDVATALSKRLKIPVLVGPNL
                     QKEVVSIEFSGLTLEPAMQLLASAVYIDYEIDTSAGVAPKPLGIFLYDSTSGEPPVTA
                     VVPGSSQSMLIEGDTEDGVEPQTDQDKKRLEEQPLKIHFQNNILSVKAKKQPLAVVLL
                     KIGEELGIPVDIQFESTDIIDTEISKLSVEDTIR"
BASE COUNT          793 a          724 c          807 g          758 t
ORIGIN      
        1 gcgggtttct tggtttgctt cacatggaga tcgtacagga acgcctggaa cgggagttca
       61 accttgacct gatttctaca gctcccggtg tccgttattc agtgacgact acggacggtg
      121 ttactgcaga catcgattca cctgccaaga tgccggatcc cggacgcatc gtaaaaatcg
      181 aagaaccaat catccgcgcg gtaattctga cgccagacga gcatctcggt gggattctac
      241 ctttgcttga agagaagcga ggcgttcaga agggttttga atacataacg tcgaatcgag
      301 tgatgttgac ctacgaacta ccactgaatg agattgtgct cgacttttat gatcgtttga
      361 agtcagtctc acgtggctat gcatcgcttg attacaacct cgccggctat tgggaaagtg
      421 atctggttaa gttggatgta atggtggctg gtgaggcggt agacgctttg tcactgattc
      481 ttcatcgcag cacggctcag tcaaaagggc gcgccctggc tgagaaaatg aagcagttga
      541 ttccgcgtca actgtttgaa gttcctatac aggcggcgat cgggaataaa gtaattgcac
      601 gcgaaacggt gaaagcgctg ggcaagaatg taatcgcgaa atgctatggc ggcgacatct
      661 cgcgcaaacg caaactgctc gagaaacaaa aagaaggcaa gaagagaatg aagaaggtcg
      721 ggcgcgtcga gatcccgcag gaagcattcc tcgcagtgtt gaaagtgaat gagtagtcgt
      781 ccgttgaccc cactccggta gaaaagtgtc ggcagttcct tcaatcccag aaacagtcaa
      841 tcgtgctgaa cacgagttgt tactttgctg tttgtgtccc gatcaggact caacggtaag
      901 tgatcgaatt cgcgagttag ttcaaattga gcaagactgg gattacctct ttctgctcgc
      961 acgtcgtcac ggcgttactc cactctttta ctcgcgtctt cagtcaaacg cggcgagtcg
     1021 tgttccttca ctcgatctgc aacggctgca aaaatacttc caggaaaaca cggcccggaa
     1081 cgttctgctg agtgctgaac tttgtcgctt gatcagtctg ttggctgagg acgctatcga
     1141 agctatccct tacaagggac cggtgctggc tctatttgca tacgaggata tcggtctgcg
     1201 gcgttttgtt gacctcgaca taatggtcag gaaggaagac gcaacgcgag caatagaaat
     1261 cctgctggcg tctggttatg agttcaccaa accattaacc gagagtcagc tcgacgtact
     1321 tcttagaaca caacacaacg ttcagcttcg ccggcacaag cgccaattga ttgttgagct
     1381 gcattgggaa gtggcatcac atctctttgc ttcatctgtg caagccgacg agttgtggca
     1441 aagccttgaa ccaatctcgc tcaatggaac tgatctccgg actctttcgg ctgaggatct
     1501 catgttttcg ttatgtgttc atggttcgcg gcatctgtgg gagcgactgc tttggatttg
     1561 cgatgttggt tggatcatcg ctcgtcgtaa gttgaattgg tcagcgcttc tcgagcgagc
     1621 ccgagcaact cattctgagc gaatctttct cttaggcgtg cacctggcgg cgaagctatt
     1681 gcgcgtgaag ttgcctgacg aagtgattaa ccagattgag ggagatagtc aactcgatag
     1741 gttagcgaat gttgtaatcg ctagcttatt caatggaaca gttcataggc cagcatcaac
     1801 gagcgagatc tttcgctaca acctgagagt gaggaagacc tggccagctc ggatgcgcta
     1861 ctttcgtcat atgctaaacc caaccgatcg cgatcttgat gccgtcgcat taccgaggtc
     1921 gctgtccttt ggctattatc tgatgaggcc tattcgactg ctctttcggg cgaacgaaga
     1981 cattcagtag cgagattcgt caagttcatg ggccttttca gattgtgatc tcgaagccaa
     2041 atgtgaatgt tttgtgtttt cgcgttggaa ctcaacgtcg aaaagcacaa acaaattgac
     2101 gctcaagcga cgcgagtggt aggctccccc ctgtcaaggg gtactgattc ctccgctatt
     2161 tgtacgttac ggttcaggtt tcgggcgtct agcgtgaaat ttgacgtact tttttccgac
     2221 gtgctggttt cacgtcaatc aacgttacat agagaacagt cgatctaaat gggaggccga
     2281 aacgcctctt gcgaaaacat ctgacacaac ttaggaaatc tggattgaaa gtatatttac
     2341 cactcagtcg caatttgaac ttcgcactac tggcgatagt gatcgccatt gcctccaacg
     2401 ctgcggttgg acaagagaca aagccagaag gagcgaagcc ggcaactgcg aaacccgacc
     2461 aagctaaaag ccaaacgcca accgatactg agaaaccaga ctttacgctt tcggtaaaga
     2521 cgaggccgat cctgaacatc agcctaaagg ctgagaaggt caagctcgtg gacgtggcca
     2581 cagcactgtc gaagcgtttg aagatccccg tattagttgg gccaaatttg caaaaggaag
     2641 tggtttcgat tgagttcagt gggctaactc tcgaaccggc aatgcaactg ttggcttcgg
     2701 ctgtttatat cgactacgag atcgatacca gtgctggcgt ggcgccgaaa cccttgggaa
     2761 tcttccttta tgactcaact tccggagaac caccggtgac agcggttgtg ccagggtcgt
     2821 ctcagtcgat gctaatcgaa ggcgacacag aagatggagt tgaaccgcaa acggaccagg
     2881 acaaaaagcg actagaagaa caaccactga agatccactt tcagaataat attcttagcg
     2941 tgaaagcgaa gaaacaacca ttggctgtgg tccttttgaa gatcggcgaa gaattaggga
     3001 taccggtaga tatccagttt gagagtacgg acatcatcga caccgagatc tcaaagcttt
     3061 cagttgagga cacaattcgg aa
//
LOCUS       DATCGC010000567         1268 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_474502, whole genome shotgun sequence.
ACCESSION   DATCGC010000567 DATCGC010000000
VERSION     DATCGC010000567.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1268)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1268)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1268
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_474502"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(124..576)
                     /locus_tag="VIJ87_05340"
     CDS             complement(124..576)
                     /locus_tag="VIJ87_05340"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEY5443887.1"
                     /translation="MKKKLIPTVVATMFLATVAMGQAANSSNKRRAVKTGPPNGLFTP
                     AIISGDLVFTSGQIGIDSKTGQMPEGFEAQFEQVFKNLTAVLDAAGSSPEHILKATVF
                     LADMNDYNKLNELYKAKFKGDPPARTAVQVARLPRDAKIEIEAVAVLK"
     gene            complement(581..>1268)
                     /locus_tag="VIJ87_05345"
     CDS             complement(581..>1268)
                     /locus_tag="VIJ87_05345"
                     /inference="COORDINATES: protein motif:HMM:NF012686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443888.1"
                     /translation="TQGKNLAPEQRDELREQSAGDDVIMLLLQRYAPLWLAGLLGAGI
                     MAAVMASDSQILALSTMFTEDVFAFYGHKQRFGEGVQVKAGRLFIVLITLFAYAVALR
                     APETIFELAIQYAFSGFAALSPLLIAAIFWKGSTKWGALASTIWVAASVVAVALFQHF
                     VPAPAPGPSVVVWSLGSTEMLSRTPGGTAVLGFMPVVPMVIISALLMIIVSMLTRKPA
                     PTTINRYFGV"
BASE COUNT          348 a          349 c          301 g          270 t
ORIGIN      
        1 cagtcaacga caagacagac gcatatcgga cattgacttc accaaacgcc cacaaacaaa
       61 acccaaggtc taagagacga ccgtcgggcg tgctccgatc acatcagatg ggcgcaggtt
      121 ggtttatttg agaaccgcaa ccgcttcgat ctcaatcttc gcatcgcgcg gcagacgagc
      181 tacctggacc gccgttcgag cgggtggatc gcccttgaac ttcgccttat aaagctcatt
      241 caatttgttg tagtcgttca tgtcagccag gaacactgtt gccttcaata tgtgttccgg
      301 gctactgcct gcagcatcaa ggacagccgt taggttcttg aaaacttgct cgaactgagc
      361 ctcgaaaccc tccggcattt gacccgtttt ggaatcaatt ccgatttgtc cagaagtgaa
      421 aaccaaatcc ccggaaatta tcgccggagt aaaaaggcca tttggaggac cagtcttaac
      481 agctcgacgt ttattgctgg agttggccgc ttggcccatt gcaacggttg cgagaaacat
      541 tgtggcaacc acagtcggga tcagtttctt cttcatgact ttaaactcca aagtatctat
      601 tgattgtggt aggtgctggt ttgcgagtca gcatcgagac aatgatcatt aaaagcgcag
      661 agatgatcac catcggcaca acgggcataa aacccagaac tgcagttcca cccggcgttc
      721 gggaaagcat ttcagtactg ccaagcgacc aaaccaccac cgaaggacca ggcgctggtg
      781 ctggtacgaa atgttgaaac aaggctacag cgacaactga tgcggcaacc caaatagtcg
      841 aagcgagcgc gccccacttt gtacttccct tccaaaagat cgcagcaatc agcaaaggcg
      901 agagcgctgc aaaacctgaa aatgcgtatt gaatcgccaa ctcaaaaata gtttcgggcg
      961 cacgcaacgc cactgcgtaa gcaaacaacg tgatcagcac aatgaaaagg cgacccgcct
     1021 ttacttgaac tccttcaccg aaacgctgct tgtgcccata gaaggcaaac acatcctccg
     1081 taaacatggt tgagagagca aggatctgag aatcactggc cattaccgcc gccatgatgc
     1141 ctgcacctaa cagcccagcg agccagagcg gtgcgtaacg ttgcaacaac aacatgatca
     1201 catcgtcgcc ggctgactgt tcacgcaact catcgcgttg ttccggagcc agattcttgc
     1261 cttgcgtt
//
LOCUS       DATCGC010000568         1088 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_76460, whole genome shotgun sequence.
ACCESSION   DATCGC010000568 DATCGC010000000
VERSION     DATCGC010000568.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1088)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1088)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1088
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76460"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(30..>1088)
                     /locus_tag="VIJ87_05350"
     CDS             complement(30..>1088)
                     /locus_tag="VIJ87_05350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443889.1"
                     /translation="GTYDVKVGIRTGDNQGIFQLVIDGANHGPPQDEYSPTIGYNVRD
                     LGPVTFATDGPKTFQFVAVDRNPLSKDYKLIFDYLDVDPYFEAETLPVEAHSAPIVPI
                     FGQDLSGGSAVLLKATQIGDYVTYGVPITVAGNYSVRVRSDTGRNAGVFQLFVDGVKQ
                     GYAQKGQENGSNHDFNLRDLGTVSFETAGEKAFQFVVTGGNSGGTKYSLAFDYVELVL
                     TSHFEAEELPADSTGRLKRVDDSNFAGEAGILFEAKARGDFVTYSVTIPSAGTYDVKV
                     GTRKDDRGGIVQLVINGVNQGTAQDNYAAETDYEVIDLGKVTFSEAGEKTFQFLVTGH
                     NRASQGYQFVLDYIDLGR"
BASE COUNT          268 a          328 c          231 g          261 t
ORIGIN      
        1 agccagacag tgcaaagacc caaaatctct cagcggccaa ggtcaatata gtccaaaacg
       61 aactgataac cctggctggc ccgattatgc cctgtaacca gaaactgaaa cgtcttctcg
      121 ccggcttcgg aaaacgttac cttcccgagg tcaatcacct cataatcagt ctccgccgca
      181 tagttgtcct gagcagttcc ttgattcacc ccattaatca cgagctgaac aattccgcct
      241 cgatcgtctt tccgagttcc cacttttacg tcgtaagtcc ccgcgctcgg tatcgtcaca
      301 gaataagtaa cgaaatcacc ccgcgccttt gcctcgaaaa ggatgccagc ttctccagcg
      361 aaattactat cgtcgacacg cttgaggcgt cctgtcgaat ccgccggtaa ttcctcagcc
      421 tcaaaatgac tcgtcaacac caactcaacg taatcgaaag cgaggctata tttcgtgcca
      481 cctgaattcc cccctgtaac tacaaactga aaagctttct cccctgcggt ttcgaagctt
      541 acggtcccaa ggtcacgcaa gttaaaatca tggtttgagc cgttttcttg acccttctga
      601 gcatacccct gttttacgcc gtcaacgaac aactgaaaga cgcccgcgtt gcggcccgtg
      661 tcgcttctca ccctgacact gtaatttccg gccacggtta ttggcacccc ataggtgaca
      721 taatcaccaa tctgagtcgc ttttaagagc acggcggaac ccccgctcag gtcttgacca
      781 aagattggta cgattggcgc cgagtgcgct tctacaggca acgtctcggc ctcaaagtat
      841 ggatccacgt ccaggtaatc gaagattagt ttataatcct tgctcagagg atttcgatct
      901 accgccacga attgaaaagt cttcggacca tcggtcgcga acgtgaccgg cccaagatcc
      961 cgaacgttat agccaatcgt aggagaatat tcatcctgcg ggggtccgtg atttgcgcca
     1021 tcgatcacga gctggaaaat gccctggtta tcccctgttc tgatcccaac cttcacgtcg
     1081 taggttcc
//
LOCUS       DATCGC010000569         3415 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_309539, whole genome shotgun sequence.
ACCESSION   DATCGC010000569 DATCGC010000000
VERSION     DATCGC010000569.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3415)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3415)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3415
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309539"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..331)
                     /locus_tag="VIJ87_05355"
     CDS             complement(<1..331)
                     /locus_tag="VIJ87_05355"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HEY5443890.1"
                     /translation="MNFSDFSESQQKRIESAVQNLAFGQLLGIKLEAAEPGQASMSMA
                     VRDELRQNNGVVHGGAIAALIDSAAAFAVIPLLDADETATTVDLTISYLRPLAKGVAS
                     ASAKVLRA"
     gene            complement(328..738)
                     /locus_tag="VIJ87_05360"
     CDS             complement(328..738)
                     /locus_tag="VIJ87_05360"
                     /inference="COORDINATES: protein motif:HMM:NF014019.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjQ family protein"
                     /protein_id="HEY5443891.1"
                     /translation="MSSDNMQRVPYAVSPPRYSVSHQMVTTAFELPNYRVVQNLGVVR
                     GIVVRSRNVFATLGATLQTIVGGNITVWTSLCEQTRTDAFEIMIQHATEIGANAIVGA
                     RYDTTELSAGVTEVLAYGTAVIVEPLNPGESYRS"
     gene            complement(735..1151)
                     /locus_tag="VIJ87_05365"
     CDS             complement(735..1151)
                     /locus_tag="VIJ87_05365"
                     /inference="COORDINATES: protein motif:HMM:NF013222.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MGMT family protein"
                     /protein_id="HEY5443892.1"
                     /translation="MIETKAVPAKRDNPNYRERVYKIVRKIPSGRVMTYGQIAELLGE
                     GYTPRTVGFVMHASPEGTPWHRVLNAQGACSTGPVVLPHDKQQRLLESEGVAFDKNLR
                     CDLQKVLWKPKTRSQPALKVTLYKRRSVKSPQGGKR"
     gene            complement(1148..1792)
                     /locus_tag="VIJ87_05370"
     CDS             complement(1148..1792)
                     /locus_tag="VIJ87_05370"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF016115.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016812 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in cyclic amides
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HEY5443893.1"
                     /translation="MPIYDLTVPLTNDMASYPGDPGVQITDWSSLARGDSANVTRLNF
                     GAHSGTHVDAPAHFIEGAAKSESLALESLIGEAQVIDVPDSCLSIGKEFVSDVYESGI
                     SRVLFKTRNSKFWQEYATEFRQDFTYLELEAAEYLAEQGVKLVGIDYLSIEQFGQKQH
                     PTHLALLSRGIVIVEGLNLTGISAGRYELICLPMRIRSGQGDGAPARAVLRTID"
     gene            1886..2770
                     /locus_tag="VIJ87_05375"
     CDS             1886..2770
                     /locus_tag="VIJ87_05375"
                     /inference="COORDINATES: protein motif:HMM:NF014658.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis protein"
                     /protein_id="HEY5443894.1"
                     /translation="MHTQFQSITFASLSKRPIVEVSRISSKDFPPLKIAASSYLNSAP
                     LIWSFLYGSMRGVADFVDPVPARCAQLLGQEEVDVALVPVIEYQRIPDVSLVPDVCVA
                     SKREVRSVILVSRKKDLENISSVALDESSRTSATLVKIIFREFLNREPTWSTHSPDLE
                     KMLEQNDAALMIGDPAMIFPREGLSVWDMAGLWRNYTDLGFVFAMWAVRNNAFERACN
                     VDFSAARDEGVEHKTEIVEQYHKLLGLSRESLRHYLDENISFSVDDQLRKGLELYFQL
                     AHKHGLLSELKPLKTLGQ"
     gene            2793..>3415
                     /locus_tag="VIJ87_05380"
     CDS             2793..>3415
                     /locus_tag="VIJ87_05380"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY5443895.1"
                     /translation="MTNKSNVESILDRTLAGERMTVAECTTLLESHDIAPMGAAADVI
                     RSHRHPGNIVTYIIDRNVNYTNVCNVVCTFCAFYRRPGAPDTYVRTFEEICHKIDETI
                     ALGGTGVLMQGGLHPDFGIEWYEDLLRSLREKYPTFQLHCFSPPEIHNIHLISNLDYE
                     TIMSRLKAAGLYSLPGGGAEILDDEVRKRVSTKCTTDEWLDVMRAVHR"
BASE COUNT          834 a          889 c          871 g          821 t
ORIGIN      
        1 cagcacggag cactttagct gacgcgctgg ccaccccttt cgccaaaggc cggagataac
       61 ttatcgtcag atcaacagta gtggctgtct cgtctgcatc caacagcggt atgacggcga
      121 aagccgcagc tgaatcaatt aaggcagcga tcgccccacc atgaactact ccattgttct
      181 gacgaagctc gtccctgaca gccatgctca ttgaagcctg gccaggttca gcagcctcaa
      241 gcttgattcc caggagttga ccaaaggcga ggttctgaac ggcgctctca attcgtttct
      301 gctgtgattc ggagaagtca gaaaagttca tgaccggtag ctttcgccgg gattgagagg
      361 ctccacaatc acagcggttc cgtaggcaag cacttcggtc actcctgccg acaattcggt
      421 cgtatcgtag cgtgcaccca cgattgcgtt ggcgccgatc tcggtcgcat gttgaatcat
      481 gatctcgaag gcatcggtac gagtctgctc acagagtgat gtccaaacag tgatgttgcc
      541 gccaacgatt gtttgcagcg tggcaccaag ggttgcaaag acatttcgtg aacgcacgac
      601 aatgccgcgg acaaccccga ggttctgaac aacccgatag ttggggagct caaaggcagt
      661 cgtaaccatt tggtgggaaa ctgagtaccg tggaggactg actgcgtacg gtactctttg
      721 catattgtcg gagctcatcg tttgcctcct tgcggcgact taacagatct gcgtttgtac
      781 aaagttactt tgagcgctgg ttgtgatcga gtttttggtt tccacaagac cttctgtagg
      841 tcgcaacgca aattcttgtc gaaggcgact ccttcacttt cgagcagacg ttgttgttta
      901 tcatgtggca agactactgg accggtcgaa cacgcaccct gtgcattcag cacgcgatgc
      961 catggtgtgc cttcaggaga tgcgtgcatc acgaaaccca ctgttcgcgg cgtatatcct
     1021 tcgcccaaca attccgcgat ttgaccatag gtcatcaccc gacccgacgg aatcttacgc
     1081 acgattttgt atacgcgctc acggtagttt gggttatcgc gttttgccgg cacagcttta
     1141 gtttcaatca atcgattgta cgaaggaccg ctctcgcagg cgctccgtca ccctgcccac
     1201 ttcgaatccg catcggcaaa caaatcagtt catagcgccc cgcagaaatg ccggtgagat
     1261 tcaaaccttc gacaattact attcctcgag agagcaaagc aagatgtgtt gggtgttgct
     1321 tttgtccaaa ctgctctatc gaaagatagt caatgccgac cagtttgact ccctgctcgg
     1381 caagatactc ggccgcctcc aattccagat aagtgaagtc ctgacgaaac tcagttgcat
     1441 actcctgcca gaattttgaa ttccgcgtct tgaacaaaac acgcgaaatg cccgattcgt
     1501 aaacatcgga tacgaattct ttgccgattg acaagcagct gtccggcacg tcgatcacct
     1561 gggcctcacc gatcaaagat tcgagcgcta gcgattctga cttcgcagct ccttcgatga
     1621 aatgagcagg cgcatccacg tgtgttccgc tgtgcgctcc aaagtttaga cgggtgacgt
     1681 ttgcgctatc acccctggcc aggctggacc aatccgtaat ctgaacaccc ggatcgccag
     1741 gatagctagc catatcgttc gtaagaggaa cagtaagatc gtagatgggc atgggcaggt
     1801 tctcggtgag aggggatagt agtggcctgg aaatgagcgt gtcaattctt acgactaaag
     1861 gcgtcattgc cacacgccgg tccgcttgca cacacaattt caatctatta cattcgcctc
     1921 gttaagcaag agaccaatcg tcgaggttag ccgcatcagt tccaaggatt tcccaccttt
     1981 aaaaattgcc gcctcaagct acctaaacag cgcacctttg atttggagct ttttatatgg
     2041 ctcgatgcgc ggagttgcag actttgtcga cccggttccc gctcgatgcg cccaacttct
     2101 tgggcaggaa gaagtcgacg ttgcacttgt accggtgatc gaatatcaac ggatacctga
     2161 tgtgtcattg gttccggatg tgtgtgtagc atcgaagaga gaggtacgca gcgtcattct
     2221 ggtgtcgaga aagaaggacc tcgaaaacat cagcagcgtg gctttggatg aatcgtctcg
     2281 aacctctgca acgcttgtaa agattatttt ccgtgagttt ctgaatcgag aaccaacctg
     2341 gtcaactcat tcgcccgacc tggagaaaat gcttgagcag aacgacgccg cgctaatgat
     2401 tggcgatccg gcaatgatct ttccgcgtga aggtttgagc gtgtgggaca tggctggttt
     2461 atggcgaaac tacaccgacc tcggtttcgt ttttgctatg tgggcggtca gaaacaacgc
     2521 tttcgaaaga gcctgtaatg tcgacttttc agcagcgcgt gacgaaggtg tggaacacaa
     2581 aaccgagatt gtcgagcaat atcacaagct gctcggacta tcgagagaat cgctacgcca
     2641 ctacctggat gagaacatta gcttcagtgt cgatgaccaa cttcgtaagg ggctcgaact
     2701 ttactttcaa ctggcccaca aacatggact gctttctgag ttgaagccgt tgaaaacact
     2761 tgggcagtag cttagtattc aacataggaa tcatgaccaa caaatcaaac gtcgaatcta
     2821 tattggatcg aactctagct ggcgaacgaa tgaccgtcgc ggagtgtacg acgctacttg
     2881 agtcacatga tatcgccccg atgggcgccg ccgcggatgt aataaggtcg caccggcacc
     2941 ccgggaatat agttacctac atcatcgatc gaaatgtgaa ctacacaaac gtttgcaacg
     3001 tcgtctgcac cttctgtgcg ttctatcgac gaccgggtgc gcccgacaca tacgtccgaa
     3061 cgtttgaaga gatttgtcac aagatcgatg agacaatcgc actcggcggc accggagtct
     3121 tgatgcaggg tggtttgcat ccagactttg gcattgagtg gtatgaagac ttattacgtt
     3181 cgctccgtga gaagtaccca acgtttcagc tgcactgttt ttcaccacca gagattcaca
     3241 acattcatct catttcaaac ctcgactacg agacgatcat gtcgaggctc aaggcagccg
     3301 gcttatacag cctgccgggc ggcggcgcag agatcctcga tgatgaagta cgaaagcgag
     3361 tttccaccaa gtgcacgaca gatgagtggc tcgacgtgat gcgtgcggtt catcg
//
LOCUS       DATCGC010000570         3289 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_407086, whole genome shotgun sequence.
ACCESSION   DATCGC010000570 DATCGC010000000
VERSION     DATCGC010000570.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3289)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3289)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3289
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407086"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..972
                     /locus_tag="VIJ87_05385"
     CDS             <1..972
                     /locus_tag="VIJ87_05385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443896.1"
                     /translation="VPVVEPVIVTPPVVVTPPVVVIPPIVTPVDVTTPTLPPTGDPGP
                     PFKNVNTLSIVNSAIGAQIKNAALAEGLQEVPLEIPIVPLQLVTKPGVERWPVKTGTD
                     IHVGLVGKNLVGGQNLGAGIVEATVEELIQFGRPVGMRPVSKNFDSTFHASRLGVVEI
                     TVWQLEGDITVLKLETDGDYHLVLQGASGDTLVAEVPTPTKKFIGESPWLANIKTVRQ
                     QVDDKLVNHLSPANFVQMPGTGTLVPRESLPASLQMQALPAPSNVLSFATPEAGNEVA
                     MPTFQTKVKPTPVRITGVGFFDKVHGQTGVSQFNGIELHPVLKIEFL"
     gene            complement(1015..1209)
                     /locus_tag="VIJ87_05390"
     CDS             complement(1015..1209)
                     /locus_tag="VIJ87_05390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443897.1"
                     /translation="MAHKRKDHAKKEEVVTDVRLKPMGQVRLVPTEKPSEPPPDKRIH
                     ERRYIPLVPEGPDKDDNPDD"
     gene            1614..>3289
                     /locus_tag="VIJ87_05395"
     CDS             1614..>3289
                     /locus_tag="VIJ87_05395"
                     /inference="COORDINATES: protein motif:HMM:NF042645.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FecR family protein"
                     /protein_id="HEY5443898.1"
                     /translation="MNRIKVWPHITIMAGVVALIAAVGVGFWMKHEQTASAEELPYAA
                     RIQRVDGEVAFSDSLPNTDAANANAEWTAATPNQPFSDGDRIYTRDNSHASLAFSGRN
                     FARLNPNTSLDVVSLGDRRTQLALRDGSAMFEVGHLERNELFEVATPNGSVNFDQPGL
                     YNLGFDNNGGVLVSVLSGLARVVGQSGSGEISKGEMLTLVGQAATELALSRLNNQDAG
                     NQVDDYYRYQYPNSYDGRYNNYDAYLNDPNYYDPYSRNASYKYASANIPGINDLDYYG
                     DWQNVAGYGNAWRPRVDSGWVPYQQGQWTNDYPYGPTWVSSEPWGYAPYHYGRWANVN
                     NQWYWIPDGANTTSAYAPALVGFVNLNDGNQIGWVPLGPGDIYAPRYYDSNWQPRYLT
                     RANVTPEQFINFGIPGAVTVVPVDAWGRAIDPRNIRRTDSRTLASLRPTLDPLTLTPL
                     RNALIHSAWGRGKIDLPPGIAKKIRDTPVYVSGDIRESASRKDMARSMRVERVSDQAR
                     NQKFKVKDERHDSQQVDQSRTQGVERLSVEAKRGDKKAQQQVRKVERQEK"
BASE COUNT          786 a          850 c          888 g          765 t
ORIGIN      
        1 gttccagttg tagagcctgt gatcgttact cctccggtgg ttgttactcc tccagtagtt
       61 gtcattccgc caatcgtgac acctgtagat gtaacgacac ccactctacc tccgacaggc
      121 gaccctggcc cacccttcaa aaacgtcaat actctttcga ttgtgaattc cgctattggg
      181 gcccaaatca agaatgcggc gcttgctgaa ggactccagg aagttccatt ggaaatccct
      241 attgtgccac tccagctagt cacgaagccc ggtgtagaac gatggcccgt gaaaactggg
      301 actgacattc acgttggtct ggttggcaag aacttagtgg gcggtcaaaa cctgggcgca
      361 gggattgttg aggctactgt agaagaattg attcaattcg gacgtccggt cggcatgcgt
      421 cctgtcagta agaatttcga ttcaacgttt catgcgagcc gactcggtgt ggttgaaatt
      481 accgtctggc agctggaggg agacatcact gttctaaaac ttgaaacaga tggcgactac
      541 catcttgtgc tacagggagc tagcggcgac acgctggttg ctgaggtccc aactccgaca
      601 aagaagttta ttggtgagag tccatggttg gctaacatca aaactgtgcg acaacaagtc
      661 gacgacaaac tggtaaatca cttgtcgccg gcaaacttcg tgcagatgcc cggcaccggc
      721 acccttgtgc ctcgagaatc tcttccagca agcctgcaga tgcaagcgct accggcgccc
      781 tcgaatgttc tttcgttcgc cactccagaa gctggcaatg aagttgccat gccgaccttc
      841 cagactaagg tgaagccgac cccggtacgg ataaccggcg tgggcttttt cgataaagtg
      901 catggccaga cgggagtgtc ccaatttaac gggattgaac tccatccggt tttgaaaatt
      961 gagtttcttt aggaattgtg gggcaggttg tcgagcgagt tgatgacctg cctttcaatc
     1021 atcaggattg tcgtctttgt caggtccctc gggaaccaaa gggatgtagc ggcgctcgtg
     1081 aatccgtttg tcgggcggcg gctcgcttgg cttttccgtt ggcactaacc gcacttgacc
     1141 catcggtttc aagcgtacgt cagttacgac ctcttctttc tttgcgtggt cttttctttt
     1201 atgcgccatc gattttacct cccggaacaa cccctaatat accctctgaa ttagtcgaac
     1261 tctagcgtgc tcgctcggag ttggaatctg ctcaccttca acacctcaag gctgaaggat
     1321 ctcatcttca atttcaagat tacaagcggc aattgtgtcg gtcagtgcga caccacacat
     1381 atgcgagtgc tttgataggc aatcgctaat aaagactata tgcggcccag cgcacagacg
     1441 gcacagcttg cttggactac gttgtgacta agttcccaac taacagacag ccaaagatgt
     1501 ccctgtatca accttgtagc tcctcttacg gtcattccca cagatgagat aaccaggccg
     1561 gacttactct tcgcttaagt tagacggcaa gacgtttaga gaaggagagt tcaatgaaca
     1621 gaatcaaggt atggccgcat attacgatca tggcaggggt agttgcgctt atcgctgcag
     1681 taggcgtggg cttttggatg aagcatgaac aaaccgcatc cgccgaagaa ctgccgtatg
     1741 cggctcggat acaacgagtg gatggcgagg tcgctttcag cgatagcctc cctaacactg
     1801 atgccgcgaa tgcgaatgcg gagtggacag ccgcgactcc gaatcaaccc ttctcagatg
     1861 gggatcggat ttacacacgt gataactccc acgcctcgct agcgtttagc ggacgcaatt
     1921 tcgcgcggct caatccaaac acatcactcg atgttgtatc gctgggagac cgccggactc
     1981 agctcgcgct ccgcgacggc tcggcaatgt tcgaagtcgg tcatttagag cgtaatgaat
     2041 tgtttgaagt agccacaccc aacggctcgg ttaacttcga tcagccgggg ctttacaacc
     2101 tcggttttga caacaatggc ggagtgctcg tctcagtgtt gagcggactc gcgcgggttg
     2161 ttgggcaatc gggttctggg gaaattagta aaggcgaaat gcttacgctc gtgggccagg
     2221 cggctaccga gcttgcgttg tcgcgattga ataaccagga cgccggaaat caagtggacg
     2281 attattaccg gtatcaatat ccgaattcct acgatggtcg ttacaacaac tacgacgctt
     2341 atcttaacga tcctaactac tacgatcctt acagtcgcaa cgcgagttat aagtatgcga
     2401 gtgcaaacat tccgggcatc aacgatctgg attactacgg cgattggcag aatgttgccg
     2461 gctatggtaa tgcctggagg ccgcgggtcg attcaggttg ggttccgtat cagcaaggcc
     2521 agtggaccaa cgattaccca tatgggccaa cctgggtttc aagtgagccc tggggctacg
     2581 cgccctatca ttatgggcgt tgggccaacg ttaataacca gtggtactgg attcccgatg
     2641 gcgcgaacac gacgtcggcg tatgccccag ccctcgttgg tttcgttaat ctaaacgacg
     2701 gcaaccaaat cggctgggtc ccgcttggtc caggcgatat ttatgcaccg cgttattacg
     2761 actccaattg gcagccgcgt tatctgacac gggcgaatgt aacgcctgaa caatttatca
     2821 actttggcat accaggcgca gtcaccgttg tgccggtgga tgcgtggggt cgcgcgatag
     2881 atccgcgcaa catcagaagg actgacagcc ggacgttggc ctcactgaga ccaacgctcg
     2941 accctttgac actgactccg cttagaaacg ctctgatcca ttcggcatgg ggacgcggca
     3001 agatcgatct gccgcccggc atagcgaaga aaatcaggga cacgcctgtt tatgtcagcg
     3061 gcgatatccg ggagtctgcg tccaggaagg acatggcaag gtcgatgcgt gtggaacgtg
     3121 tttccgacca ggcaagaaac caaaagttca aggttaaaga cgagcgccat gattcgcagc
     3181 aggtggacca gtctcgcaca caaggagtcg aacggctcag tgttgaagcc aagcggggcg
     3241 ataagaaagc tcagcagcag gtgcggaagg ttgagcgaca agagaagaa
//
LOCUS       DATCGC010000571         1557 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_107745, whole genome shotgun sequence.
ACCESSION   DATCGC010000571 DATCGC010000000
VERSION     DATCGC010000571.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1557)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1557)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1557
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107745"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1120)
                     /locus_tag="VIJ87_05400"
     CDS             complement(<1..1120)
                     /locus_tag="VIJ87_05400"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY5443899.1"
                     /translation="MRVSKLTIARLFVLIFICVSSALAQSDRGGITGRVIDSNGAVVA
                     GAKVTVLNAETGETRESRTNEEGHYTIPQLPAVIYTLKVEAQGFKTASVERIKIAVQV
                     IRTVDVTLEVGEIANTVLVSGDATPVLQTESPAQQLNVSERQVRELPLLVASESGGRS
                     PLSFIFLDSSVVSNDRTPTGATSGSTGTNATNFRINGGQGLGADVLIDGAQTRRGENG
                     TFFSEVAPGPNAFQEFTLSTSSYSAEFGNSSGGVVNFTIKTGSKDFHGEAYLFHINDA
                     LNANIDRNRILGLDKPLDRQFDYGFSVGGPVYLPHFGEGGPLLWDTNKKTFFFFNYGG
                     YRTSQSETVQLTVPTARMRNGDFGELLTDPYVLQFFCGP"
     gene            1365..>1557
                     /locus_tag="VIJ87_05405"
     CDS             1365..>1557
                     /locus_tag="VIJ87_05405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443900.1"
                     /translation="MFINRSGAVSFLLSLWILLKVGALAWPQQRLPVTDGQSKGDIRQ
                     VHDPSIIKEGNTYYVFSTRA"
BASE COUNT          386 a          375 c          398 g          398 t
ORIGIN      
        1 ctggtccaca gaagaactgg agcacgtaag gatcagtcaa caattcgccg aagtctccat
       61 tgcgcatgcg tgcggtcggt actgttagct gaactgtttc ggactgcgac gttctatagc
      121 ctccatagtt aaagaagaag aacgtctttt tgttggtgtc ccaaagtaat ggtccgcctt
      181 cgccgaaatg aggcaggtac accggtccgc ccacactgaa accataatca aactgtcgat
      241 cgagcggctt atcaagaccc aggattcgat tacgatctat gtttgcattg agagcatcgt
      301 ttatgtgaaa gagataggct tcgccatgaa agtctttgct gccggtcttg atcgtgaagt
      361 tgacgacacc ccctgaagaa ttaccaaact cagctgagta gctgctggtg gaaagcgtga
      421 attcctgaaa tgcatttggg ccaggcgcaa cttctgagaa aaatgtgccg ttctctccgc
      481 gccgagtttg ggcgccatca atcagaacgt ctgcaccgag tccttgtccg ccgttgatac
      541 ggaagttagt agcgtttgtt cctgtgctgc cggaggtggc tccggtcgga gtgcgatcat
      601 tcgaaaccac actactgtcc aaaaagatga atgacagtgg cgagcgacct ccactttcag
      661 aggcgactag caatggtagt tcgcgcactt gacgctcact aacgttgagt tgttgcgccg
      721 gactttccgt ttgcaggact ggtgtcgcat cacccgacac caatacagtg tttgctatct
      781 cacccacttc aagtgtgaca tcgacggtgc gaattacctg gacggcgatc tttattcttt
      841 cgaccgacgc ggttttgaag ccctgtgcct cgaccttcaa ggtataaatt actgccggta
      901 attgtgggat ggtgtagtgg ccttcttcat ttgtgcgcga ttcgcgagtt tctccggttt
      961 ctgcgttcaa aaccgttacc tttgcgcccg caactacggc accgttcgag tcgatcactc
     1021 tcccggttat tccgccgcga tcgctttgag caagagcaga tgaaacacat atgaagatga
     1081 gtacaaacaa ccgagcgata gtcaacttag agactctcat tcgtacctcc caggaaaaca
     1141 ggacgtaagc aagaaatttg atttatcggc aattatgcgg acagggttgc agtcctgatc
     1201 gcaaatcgtt tttgggggag tgagccaact aaaatgtaag aaggaactat ttcgggggat
     1261 ttgctcattt atactggaaa tgaacacgaa gtcaagaagt atctgggtca aaggtgcagg
     1321 atgtaccaga tcgatctcgc ctttcgattt aacaggagca attcatgttc attaacaggt
     1381 cgggtgcggt gagttttctg ttgtcattat ggatactcct caaagtcggc gcgcttgcgt
     1441 ggccacagca acgacttcct gtcacagacg gacaatccaa gggtgacatc cgtcaggtcc
     1501 acgatccaag cattatcaag gaggggaata cctactatgt tttttcgacg agagcag
//
LOCUS       DATCGC010000572         1063 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_76531, whole genome shotgun sequence.
ACCESSION   DATCGC010000572 DATCGC010000000
VERSION     DATCGC010000572.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1063)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1063)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1063
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76531"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..422
                     /locus_tag="VIJ87_05410"
     CDS             <1..422
                     /locus_tag="VIJ87_05410"
                     /inference="COORDINATES: protein motif:HMM:NF014525.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HEY5443901.1"
                     /translation="LLIIFMVVTPLKPSRFKADIPTQRDPNEDLSKLKPNPLTLVVSI
                     SPDLQIKLNADALGSVNDTTQLSQKLLLTFQQRKEQRAYKVGMEARSDVKEDDRIEKT
                     VFVKAPRAAKYGDVVKVIDAIKGAGASPVGLQVDDLP"
     gene            519..>1063
                     /locus_tag="VIJ87_05415"
     CDS             519..>1063
                     /locus_tag="VIJ87_05415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443902.1"
                     /translation="MKLSQTRIAMALAILVATTSGCGVIYRIRAKNQLNEAARAYREG
                     RFVEAEQHSREAAALDPENKTAPMFIARTIHAQYRPGVQSPENVAKAQQAIEAYQAIL
                     QANPKDEEAYKAIAYLYGAIKDDNKLRQWIAARAANESTEPEKRAEAYIVLASKDWDC
                     SFKITELPTNKVTTVDPASNKA"
BASE COUNT          290 a          268 c          275 g          230 t
ORIGIN      
        1 tgctgctgat catcttcatg gttgttacac cgttgaagcc cagccgcttt aaggccgata
       61 ttcctactca acgcgatccg aacgaagacc tgagtaaact aaagccaaat cctttgactt
      121 tagtcgtttc gatctctccc gaccttcaga tcaagctgaa tgcagatgcg cttggttccg
      181 taaacgacac gacgcagttg tcacaaaagc tgttgctaac cttccagcaa cgcaaggagc
      241 aacgtgcgta taaggtaggt atggaagctc gctctgatgt gaaggaagac gaccggatcg
      301 aaaagacggt tttcgtgaaa gctccgcggg ccgcgaaata cggcgacgtc gtaaaggtca
      361 tcgatgcaat caaaggtgcg ggtgccagtc cggtcggttt gcaggttgac gatctgcctt
      421 aataactacg agattggtgc ggcctcgacg actatgttgc gtagatctat tgaagccgtc
      481 cgttatcgct gatctcatta aattggagtc acggataaat gaaactctct cagaccagga
      541 tcgccatggc tttggcgatc ctcgttgcca ccacctccgg atgtggggtg atttatcgaa
      601 tacgagcaaa gaaccagttg aacgaggcgg ctcgggcgta tcgcgaaggt agattcgtag
      661 aggctgaaca gcattctcgt gaagcggctg ccctcgatcc cgagaacaag accgcaccaa
      721 tgttcatcgc cagaactatc cacgctcagt atcgtcccgg tgtacagtcg cctgagaacg
      781 tcgcgaaggc tcaacaagca atcgaggcat atcaggcaat ccttcaggca aatccaaaag
      841 atgaagaagc ctacaaggcg atagcgtacc tttatggcgc catcaaagac gacaataaac
      901 ttcgtcagtg gatcgctgca cgcgcagcta acgaaagtac tgaacctgaa aagcgagcgg
      961 aagcctatat cgtgttggct agtaaggact gggattgttc attcaagatc accgagctcc
     1021 caacaaacaa ggtgacgacg gtcgatccag ctagtaacaa ggc
//
LOCUS       DATCGC010000573         1233 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_373821, whole genome shotgun sequence.
ACCESSION   DATCGC010000573 DATCGC010000000
VERSION     DATCGC010000573.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1233)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1233)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1233
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_373821"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            542..1003
                     /locus_tag="VIJ87_05420"
     CDS             542..1003
                     /locus_tag="VIJ87_05420"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEY5443903.1"
                     /translation="MNEGNNLNTVKDAYQAYKDRNIKGLLECLTDDVQWFEVGPPDLI
                     PTAGTRKGREQVGEFFAVLEAIEDVQSFKPQRFVTQEDTVVVLGELKSRVRSTGNMIN
                     SPWIHVFTIKDGKISEFRSFYDSAAVVDAYANARSRSARAGTAVNPRTAVF"
BASE COUNT          348 a          312 c          298 g          275 t
ORIGIN      
        1 atgaagttaa atggaatgtc tactcgtatc gaagtgcctg gcaactgcgc acgaactggt
       61 acggcaatca ttaatgccag gagacaacct gccactaaag tgccgacaat ctgctttttc
      121 atgatctctc cttcgatggg acgacaacgg aagcgaatcg tcttcccgaa ttcttaaagt
      181 ggagtcggct ctttttcctg ccaactactt cgccactctt ctttttccaa ccgttgatcg
      241 gagctattaa gaaatttagt tccgactcaa ccgaacaact agaaatcggc atgccaaaac
      301 attgagtgcc gtacgtagtg ttacagctgt tcatgatcga gtttttgttt gaggctttct
      361 ttctcaccaa cgccaaaaag ccacacacgc taaagcggac aacagaaaaa cagccaacgc
      421 aaaaccagga aatttcccgc ttacctctcg gccgctgctg gcacgatcgt tgcgcccgac
      481 aggtaaccgc aaagaggtga ggcttctctc acctcgtgat ttcatttgaa ggagatgaat
      541 gatgaacgaa ggcaataacc tgaacaccgt gaaggacgcc tatcaggcct acaaggatcg
      601 caacattaaa ggtttactag aatgtcttac ggacgatgtc caatggtttg aagttggtcc
      661 accagatttg atcccaaccg ccggcactcg gaagggccgt gagcaagtgg gagaattctt
      721 tgccgtgctc gaagctatcg aggatgttca aagttttaaa ccgcaaaggt tcgttacaca
      781 ggaagacaca gtcgtggtcc ttggggaatt gaagagtcgt gtcagatcca cggggaacat
      841 gatcaattca ccctggatcc acgtgttcac catcaaggat ggcaagatct cagaattccg
      901 atctttctac gacagcgcgg cggtagttga tgcttacgcc aacgcccgct cgcgctccgc
      961 gagagcagga acagcggtaa atccgagaac cgccgtattc taattgcggc gtaatacgtt
     1021 tcatttcgac agggcgaaga tctcgctcaa catttaaggg aggcagcaat tatgaaagat
     1081 gagcaagcag tgaccaataa cgatcgcaaa tctcaaggcg tggcctcggc aactccggcg
     1141 atgactacgt ccaacagtgg gaatcgcaaa aacgagtcaa agaaaaagcc tcgctccggg
     1201 aaactggccc actccgcagg acacggtaaa tag
//
LOCUS       DATCGC010000574         1728 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_175884, whole genome shotgun sequence.
ACCESSION   DATCGC010000574 DATCGC010000000
VERSION     DATCGC010000574.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1728)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1728)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1728
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175884"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1728)
                     /locus_tag="VIJ87_05425"
     CDS             complement(<1..>1728)
                     /locus_tag="VIJ87_05425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443904.1"
                     /translation="RGGDIDEIRIYDRMLSDSNVASLAKAEVPSQVPTLTRDLSTREW
                     RNEWWLRYGWNRSGDLPPYLTNAQTSVRKVEIHDVYDLKRWWWKANDGIRETTWPGVY
                     NRSRLPGRNDYFQLPDWDCYSLSGKSVTFTMPDEPWNHLEISGAAWGKMFLKDAGEKL
                     LFQRPQGQEKTFHRLQNSIRGQQIRFENIEQEEPIGELSAYNVTTTAEPQGSTKLSYT
                     IRSDNQSTDTSLDSISKFISGRYTPDERATMIAQLDSSTAKPTDRSAALTSALPLVHI
                     LIPAAAWRDISDGLDGIAIDLPALHVQPISNGLFPLNIQIKDPLWPQRNLADFSFSIK
                     PDEPRTIWFDTRDRILPAGRPLYFTIAGAGADFGSASLNGAHVRLIFKPRAEALKEHA
                     LDRFTQARDSFAMMVEERPNDPRFDLYNRFAADIEDVLRVNPNHWLAQTYWYDVDRRH
                     PKPAFKQPEPPPGIPLWAFRQVEQLRNLKKFVMWYIDKRQIENGEFGGGLSDDGDLTN
                     VWPATALMGVEPEKVKASLLRELDAFYQQGMFTNGFPTIQADDLHSYEEGISTLGQGM
                     LLDYGSPKQL"
BASE COUNT          368 a          453 c          477 g          430 t
ORIGIN      
        1 caactgtttt ggactgccgt agtcgagcag catcccctgg cccagcgtcg aaatgccttc
       61 ttcatagctg tgcaggtcat cggcctgaat cgtcggaaag ccgttggtga acattccctg
      121 ttgatagaaa gcatcgagtt cacgcagcag cgatgccttt accttctcag gctcgacacc
      181 catcaacgca gtggccggcc atacgttggt tagatcgccg tcgtcagata gacctccacc
      241 aaactcgcca ttctcgatct gacgtttgtc gatgtaccac atgacaaact ttttgagatt
      301 gcgaagttgt tcgacttgcc ggaacgccca tagtggtatc cctggcggtg gctctggttg
      361 tttgaatgcg ggcttcggat gtcgacggtc gacgtcgtac cagtaggttt gcgccagcca
      421 gtgatttgga ttcactcgca aaacgtcttc gatgtcggcg gcaaagcgat tgtagagatc
      481 gaagcgagga tcgtttggtc gctcctcaac catcatggca aagctgtcgc gggcttgggt
      541 aaagcgatcg agcgcgtgtt ctttgagagc ctcagcacgc ggtttgaaaa tcaagcgaac
      601 gtgcgctccg ttgagcgacg ccgaaccaaa gtcagcacct gcaccggcaa tagtgaagta
      661 caacggtcgt cctgctggaa ggatgcgatc acgcgtgtcg aaccagattg ttcggggttc
      721 gtcgggcttg atcgaaaagc tgaagtccgc gagatttcgt tgtggccaca acggatcctt
      781 gatctggata ttcaacggaa agagtccgtt gctgatcggt tgcacgtgta gcgcaggaag
      841 atcgattgcg atgccatcga gaccgtcact gatgtcccgc caggcggcag ctggaatcag
      901 aatgtgaacg agcggcagtg cactcgttaa cgctgctgaa cggtcagtcg gttttgcggt
      961 tgagctatcc aactgagcga tcatcgtcgc acgttcgtct ggcgtgtaac gaccactgat
     1021 aaacttactg atcgaatcta aactagtatc ggttgactgg ttgtctgacc gaatcgtgta
     1081 cgacagtttc gtgctgcctt gcggctccgc agtggtggtt acgttatatg cggacagctc
     1141 tccgattggc tcttcctgct cgatgttctc aaagcgaatt tgttgacccc gaatcgagtt
     1201 ttgcaaacga tggaaggttt tctcctggcc ctgtgggcgt tgaaagagaa gtttctcgcc
     1261 cgcgtctttg agaaacattt ttccccacgc cgcccctgaa atctcgaggt ggttccatgg
     1321 ctcgtcgggc attgtgaagg ttactgactt gcccgagagc gaatagcagt cccaatctgg
     1381 tagctggaag tagtcgttgc gtccgggaag tcgcgaacgg ttgtaaacac cgggccacgt
     1441 cgtttcgcga ataccatcgt tcgctttcca ccaccaacgt ttcagatcat agacgtcatg
     1501 aatctcgact ttacgcacgg aggtttgcgc attggttaaa tatggcggca ggtcaccgct
     1561 tcgattccat ccataacgga gccaccactc attgcgccac tcgcgtgtac ttagatctcg
     1621 cgtcagcgtc ggaacttgag agggtacctc tgccttcgcc agtgatgcga cgttcgagtc
     1681 agacagcatt cgatcgtaga tacgaatctc gtcaatgtct ccgccgcg
//
LOCUS       DATCGC010000575         1006 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_175909, whole genome shotgun sequence.
ACCESSION   DATCGC010000575 DATCGC010000000
VERSION     DATCGC010000575.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1006)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1006
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175909"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..467
                     /gene="glnA"
                     /locus_tag="VIJ87_05430"
     CDS             <1..467
                     /gene="glnA"
                     /locus_tag="VIJ87_05430"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF012348.4"
                     /note="forms a homododecamer; forms glutamine from ammonia
                     and glutamate with the conversion of ATP to ADP and
                     phosphate; also functions in the assimilation of ammonia;
                     highly regulated protein controlled by the
                     addition/removal of adenylyl groups by adenylyltransferase
                     from specific tyrosine residues; addition of adenylyl
                     groups results in inactivation of the enzyme; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glutamine synthetase"
                     /protein_id="HEY5443905.1"
                     /translation="NSYKRLVPGFEAPVNLAYSARNRSAAIRIPMFSTNPKLKRLEFR
                     PPDPSCNAYLAFSAMLLAGLDGIQNRIDPGEPLEKDIYDLSPEELKDVPTLPGSLDDS
                     LKALEADHDFLLKGDVFSPQLIERWISYKRDREITPLRMRPHPLEFALYYDI"
     gene            535..>1006
                     /locus_tag="VIJ87_05435"
     CDS             535..>1006
                     /locus_tag="VIJ87_05435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443906.1"
                     /translation="MKVVTKGTEHWGKRRSLFTEMRELNHSDKLKFIGQPTCRIEDVQ
                     SVDAKVEFLLRDLPDQNSARLFLEQLARDNSRAHQNLIKKPALLADVIAIAAWSPLLA
                     TTLEQNPDYLSWLARERSDPRVRTADELKESLARFALTNSNLNPQNLLARFRRRE"
BASE COUNT          242 a          269 c          256 g          239 t
ORIGIN      
        1 cgaacagtta caaacgtctg gtgccgggtt ttgaagcgcc tgtgaatctt gcttactcgg
       61 cgcgaaaccg ttcagccgcg attcgtatcc cgatgttctc gacgaatccg aaactgaaga
      121 gactcgagtt ccgtccacca gatccttcgt gcaacgcata cctggcattc tcggcgatgt
      181 tgttggccgg gcttgacggc attcaaaaca gaatcgatcc gggcgagccg ctcgaaaagg
      241 atatttacga cctgtcgccg gaagagttga aagacgttcc gacattacca ggttcgttgg
      301 acgactcgct caaggcgctc gaagctgatc acgacttcct gttaaagggc gacgtgttta
      361 gtccgcagtt gattgaacga tggattagct acaagcgaga tcgagagatc actccgctca
      421 ggatgcgacc acatccactg gagttcgcgt tgtactacga catctaaagg gtttgctcga
      481 caagacgttc gattcttctc tctgcgcttt ctttgcgttc tctgagtctc ggcggtgaaa
      541 gttgtcacca aaggaacgga gcactgggga aagcgcagaa gtctttttac tgaaatgaga
      601 gaactcaatc acagcgacaa actgaagttt atcggacagc cgacgtgtag aatagaagac
      661 gtgcaatccg ttgatgcgaa agttgaattc ctgctccgag atcttcctga ccaaaacagc
      721 gctcggctgt ttctcgaaca actagccaga gacaactctc gcgctcatca aaacctaatc
      781 aagaagcctg cgttgcttgc cgatgtcatt gctatcgcgg cctggagtcc tttgcttgcg
      841 actacgctcg aacagaatcc cgactatcta tcctggcttg cacgtgagcg ctccgatcct
      901 cgcgtcagaa ccgccgatga gttgaaggag tcgctggcgc gcttcgcgct cacaaattca
      961 aaccttaatc cccagaactt gcttgctcgt ttccggagac gtgagc
//
LOCUS       DATCGC010000576         1089 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_274043, whole genome shotgun sequence.
ACCESSION   DATCGC010000576 DATCGC010000000
VERSION     DATCGC010000576.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1089)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1089)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1089
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_274043"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..312
                     /locus_tag="VIJ87_05440"
     CDS             <1..312
                     /locus_tag="VIJ87_05440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443907.1"
                     /translation="RRVNSLRRKLGLSNSKEWHFNTKYPLARKPPAKFTSSQKRVDFC
                     RGPAEVAEAIRDKRPCRLSSELGLHLTELIEVLQYPERFNGRKSIESRFAPIEPLDWI
                     N"
     gene            321..>1089
                     /locus_tag="VIJ87_05445"
     CDS             321..>1089
                     /locus_tag="VIJ87_05445"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF021616.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY5443908.1"
                     /translation="MFVSILIPCYNAEPWIAKAIESALAQTWASKEVIVVDDGSTDGS
                     LDEIQKFDGQIRWETRPNHGGNRARNRLTELAQGEWLQYLDADDYLLPEKVANQVEFI
                     GSNPNADVVFGPLLVEYTKDGKVHRDLHKIHEPHDDAWILLARWHLPQTGSPLFRRTA
                     ICEVGGWAPDQLCCQEHELYLRLLKAGKSFQHCDKNGSVYRQWTDRSVSTKNIARLHK
                     QRLKIEESLEDFLRSNRELTPGRLAAINQARFEIARSA"
BASE COUNT          280 a          256 c          298 g          255 t
ORIGIN      
        1 cgaagggtta atagtctgcg ccgcaaacta gggctctcga attcaaaaga atggcacttc
       61 aacactaaat atccactagc gagaaagccg ccggcgaagt ttacaagtag tcagaagcgt
      121 gtggactttt gtcgcggccc agcagaggtg gcagaggcga tacgggataa acgtccttgc
      181 cggctttcgt ctgaattagg gcttcacctc acggaattaa ttgaagtgct tcaataccct
      241 gaacgattca atgggcgaaa atcgattgag tcgcgcttcg ccccgattga gcccttggat
      301 tggattaact gactcttgtc atgttcgttt cgattctcat tccttgctac aacgctgaac
      361 cttggatcgc taaggcgatt gagagtgcgc tggcgcaaac ctgggcaagc aaggaagtca
      421 ttgttgttga cgacggatcg acggatggca gtctagatga gatccagaag ttcgacggtc
      481 agattcgttg ggagacccgg cccaatcatg gaggcaaccg agcgcgcaac cggttgacgg
      541 aattggcaca gggcgaatgg ttgcagtatc tcgacgctga cgactatctg ctgcctgaga
      601 aagttgcaaa ccaggttgag ttcatagggt cgaatccgaa tgctgacgta gtattcgggc
      661 cactgttggt tgaatacaca aaggacggca aagttcatcg agatcttcac aagattcatg
      721 agcctcacga tgacgcctgg attttgttgg cgcgttggca tctaccacag acaggttctc
      781 cgctcttccg cagaacagcg atttgtgaag ttggtgggtg ggctccggac cagctgtgtt
      841 gccaggaaca tgaactctat ctccgacttc tcaaggccgg aaagagcttt caacattgcg
      901 acaagaatgg gagtgtctat cgccaatgga ctgatcgtag tgtttcaaca aaaaacatcg
      961 cacgattgca taaacagcga ttgaaaattg aagagagcct tgaggacttt ctacgatcga
     1021 atcgcgaact tacgccgggc cggcttgcgg cgatcaacca ggctcgattt gaaatcgcac
     1081 gatctgcat
//
LOCUS       DATCGC010000577         1026 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_474817, whole genome shotgun sequence.
ACCESSION   DATCGC010000577 DATCGC010000000
VERSION     DATCGC010000577.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1026)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1026
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_474817"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1026)
                     /locus_tag="VIJ87_05450"
     CDS             complement(<1..>1026)
                     /locus_tag="VIJ87_05450"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5443909.1"
                     /translation="AAIKTGSANLSLNDQAERIDISQTSANYFSVFPVEPQLGRLFIP
                     EDEQAGHPPIAVLSYTLWQTKFGGNNDVVGKSITLDGKNYTVVGVAPASFQDPFKSQL
                     WLPPLRLVPELNDRMDVTQQRGMGYLAAIALLKPNVSLTQAASEMETITARLRQQYPD
                     TNNRRFNRVVSLQRDVVGDTSGMLWLLFGAVTFVLLIACANVANLLLASSASRHKEMA
                     IRAALGASRWRVIRQLFTESTMLALAGGAFGFLLSFWLLSLIKKLLPGDFPRLDEIKM
                     DWRVLGFALVASMLTGILFGFAPALQFTREDVQDSIRETGRGTSGSLRRSRFRQALII
                     SEVALSVV"
BASE COUNT          258 a          278 c          254 g          236 t
ORIGIN      
        1 acaaccgaaa gcgcgacttc ggaaatgatc agggcctgac ggaaacgact ccgtcgcaaa
       61 ctgcccgacg taccacgccc cgtttcgcgt attgagtcct gaacgtcttc acgcgtgaat
      121 tgcagtgctg gtgcaaatcc aaacagaatt ccagtcaaca ttgaggcaac caacgcaaag
      181 cccagcacgc gccagtccat ctttatttcg tcgaggcgcg gaaagtcgcc tggcaaaagc
      241 ttcttaatta acgacagcaa ccaaaacgaa agcagaaagc cgaacgcgcc acccgctagt
      301 gccagcatcg tgctttcagt aaacaattgc cggatgactc gccaacgcga agctccaagc
      361 gccgcgcgta tcgccatctc tttgtgccgc gaagccgaac tcgccaacag cagattggcc
      421 acgtttgcac acgcaattag cagaacgaag gtgacggcac caaacaacaa ccacaacatg
      481 ccgctcgtat ctccaactac gtctctttgt aagctgacaa ccctattgaa acgtcggttg
      541 tttgtgtctg gatattgttg acgcagacgg gctgtgatcg tttccatttc acttgcggct
      601 tgagtcagcg acacattcgg tttcaggaga gcgatggctg cgagataacc catcccacgc
      661 tgctgtgtta cgtccatcct atcgttgagt tcaggaacta aacgtaacgg cggtagccag
      721 agttgtgact tgaagggatc ctgaaatgac gctggtgcaa ctccgacaac tgtgtagttc
      781 ttcccgtcaa gcgttatcga tttgcccact acatcgttgt tgccaccaaa ttttgtttgc
      841 cacagcgtgt aactcaagac agcaatcgga ggatgtccgg cttgttcgtc ttcgggaatg
      901 aatagacgtc ctagctgcgg ttcaacgggg aacaccgaaa aatagttcgc tgaggtttgt
      961 gagatgtcga ttcgttcagc ttgatcattt agcgacagat ttgcgctacc ggttttgatt
     1021 gcggcg
//
LOCUS       DATCGC010000578         1102 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_76740, whole genome shotgun sequence.
ACCESSION   DATCGC010000578 DATCGC010000000
VERSION     DATCGC010000578.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1102)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1102)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1102
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76740"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1066)
                     /locus_tag="VIJ87_05455"
     CDS             complement(<1..1066)
                     /locus_tag="VIJ87_05455"
                     /inference="COORDINATES: protein motif:HMM:NF020892.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HEY5443910.1"
                     /translation="MPPAEFVKSITQKFIDLWKKLDVRYDEWAETTSDRHKKVVQGIL
                     QRLFDEGQIYKDKQSGYYSVRQEQFLTDKERGPDGQFGPQWGEIEFREEENYYFKLSQ
                     HKDWLFRYLDNRVDAVIPDFRQTELRNAVEKLSGDLCISRPKSRLDWGIELPFDNNFV
                     TYVWFDALTNYISFAGYTVGEADSFPYNSQPATFRDKWPALQIIGKDILVPAHGIYWL
                     IMLHAIGFPDDQMPQLLVHGWWNLRGAKMSKSAGNIIDPFVLIDKYGAEALRYYLMSD
                     IATGKDADFSEERVLSAYNDALANSMGNLLNRTLQMTGRFCDGTLWTNRASKLFNDYQ
                     QNWEARDKWKDNVTSGYESYH"
BASE COUNT          238 a          278 c          283 g          303 t
ORIGIN      
        1 gatgatagga ctcgtagcca ctcgttacat tatctttcca cttgtcacgt gcctcccagt
       61 tctgttggta gtcgttgaat agcttggaag ctctgttggt ccaaagagta ccgtcgcaga
      121 atcgaccggt catctgaagc gtacgattta gaagattacc catcgaattg gctagcgcgt
      181 cgttgtaagc actgagaact cgttcttccg aaaagtctgc atctttcccg gtcgcgatgt
      241 cgctcatcaa ataatagcga agtgcttcag ccccgtattt atcgatgagc acgaatggat
      301 cgatgatgtt gccggcgctc ttgctcatct tcgccccgcg gagattccac cagccgtgca
      361 ccagcaactg cggcatttgg tcgtccggaa atccgatcgc gtgcagcatg atgagccaat
      421 aaatgccgtg cgccggaacg agaatgtctt tgccaatgat ttgtaacgcg ggccatttgt
      481 cgcggaaagt tgctggttga gagttgtagg ggaagctgtc agcttcccct acagtgtagc
      541 cggcgaagct gatgtaattc gtgagcgcgt cgaaccaaac ataagtgacg aaattgttgt
      601 cgaacggtag ttcgattccc cagtcaagcc gtgatttggg acgcgagatg cagagatcgc
      661 cgcttagttt ctcgactgcg ttgcgtaatt ctgtctggcg aaaatcagga atgactgcgt
      721 ctactcgatt gtcgagatac cgaaacagcc aatctttgtg ctgacttagt ttgaaatagt
      781 aattttcctc ttcgcgaaac tcgatctcgc cccactgtgg accgaattgg ccgtcggggc
      841 cgcgttcttt gtcagttaag aattgttcct gacgaactga gtagtagccg gactgtttgt
      901 ccttgtagat ctggccttca tcgaagagcc gctgcagaat gccttgaacg actttcttgt
      961 gccgatcact cgttgtctct gcccattcat cgtatcggac atccagcttc ttccacaaat
     1021 cgatgaactt ttgagtgatg cttttaacga attcggccgg tggcacgcct gctttcgctg
     1081 ccgactgttg gaccttctgg cc
//
LOCUS       DATCGC010000579         1108 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_207631, whole genome shotgun sequence.
ACCESSION   DATCGC010000579 DATCGC010000000
VERSION     DATCGC010000579.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1108)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1108
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207631"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            34..109
                     /locus_tag="VIJ87_05460"
     tRNA            34..109
                     /locus_tag="VIJ87_05460"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:67..69,aa:Ala,seq:tgc)
     gene            440..>1108
                     /locus_tag="VIJ87_05465"
     rRNA            440..>1108
                     /locus_tag="VIJ87_05465"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          309 a          240 c          322 g          237 t
ORIGIN      
        1 catgatgctc cagggcgtca gatatgagga cccgggggat tagctcagct gggagagcac
       61 ctgctttgca agcagggggt cgtcggttcg atcccgtcat cctccaccaa tcttcgagtc
      121 cttcggggct gcaacacgat acttatagtc aacaccaaag ctgcttcgca agaggcatct
      181 ttgttgttga tcgagatctc tcggtcaatc ggctgttctt taaaaattca tagagtcgaa
      241 ttagcgtcgc tggtggaaac cgcacattcg taaaggttta gtgcggaccg tgccatcagc
      301 gacatgaatt tttgattgcg tcaaatgaac ttcaatttcg agtcaaatcg atttatgaag
      361 acggcataac gcgccaggtg aaagacctgg caattccttg aaacgatttt gattctcgca
      421 agagaggtca aagttatagg gtcaagtgaa taagagcacg tggtggatgc cttggcgatg
      481 ataggcgacg aaggacgtga tagcctgcga taagcttcgg ggagctggca aattagcttt
      541 gatccggaga tttccgaatg gggaaaccca ccgaaaggta tcgcatactg aatacatagg
      601 tatgcgaggc gaaccgggtg aactgaaaca tctcagtagc tcgaggaaca gacatcaacc
      661 gagattccga aagtagtggc gagcgaaatc ggaaaagcca gcaactttta gccagtgatt
      721 tagcggaacg gtctggaaag tccggccata gcgggtgata gccccgtatg cgaaaaatcg
      781 ctggtggaac taaggttgcg acaagtaggg cggggcacgt gaaaccctgt ctgaacatgg
      841 ggggaccatc ctccaaggct aaatactcgt aatcgaccga tagtgaacca gtaccgtgag
      901 ggaaaggcga aaagaacccc gggaggggag tgaaatagat tctgaaaccg tgtgcataca
      961 aacagtcgga gcctcgtaag gggtgacggc gtaccttttg tataatgggt cagcgactta
     1021 cattcagtgg caaggttaac cagatagggg agccgtagag aaatcgagtc cgaatagggc
     1081 gccagtcgct gggtgtagac ccgaaacc
//
LOCUS       DATCGC010000580         1711 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_241494, whole genome shotgun sequence.
ACCESSION   DATCGC010000580 DATCGC010000000
VERSION     DATCGC010000580.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1711)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1711)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1711
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_241494"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..334)
                     /locus_tag="VIJ87_05470"
     CDS             complement(<1..334)
                     /locus_tag="VIJ87_05470"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY5443911.1"
                     /translation="MSTQPNQLIIFDDVSKFYGDILGVNRVNLSIAPGITSLVGPNGA
                     GKSTLMNLMTGLLRPTQGSVTLLGIPTDRPEVLFRKVGYCTQFDSFPRGATGRGFIRS
                     FLLVHGYER"
     gene            complement(347..1264)
                     /locus_tag="VIJ87_05475"
     CDS             complement(347..1264)
                     /locus_tag="VIJ87_05475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443912.1"
                     /translation="MAVYEQTYKRYAGPLTPEWSRFLIIPRHAYRSVFKSKIFTAFFV
                     ICFVPLLVEAILIYLHHNMNALGIMKIQIRELLPIDGSFFQTFVYIQGGFAFFVTVLV
                     GPPLVSRDLRNNALPLYLCRPFSRTEYVVGKMSVLFILLSLITWVPQLLLFLFQAYQE
                     GFTWFKDNLWIASAILLASVVWILLLALISQAISALVKWRVIASAAILGLFFIPSVFS
                     AFLNEVFLTKWGNLVSLIALMGNVSDGLFGVFDRTAGTVRIEDFNNNVRLIVVTQPPL
                     WLCWGMLFLVCAICLAVLSRKVKAYEVVR"
     gene            complement(1251..>1711)
                     /locus_tag="VIJ87_05480"
     CDS             complement(1251..>1711)
                     /locus_tag="VIJ87_05480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443913.1"
                     /translation="LDEPTNGLDPPARLRMIKLIREIRDSGQASIVLSSHLLLDVEEC
                     CDEILILRDGQIAVYCNLEEERKSNRKFLMLETRGDQAKFVEAIKELGCEYAITGDHR
                     LKIVLQGGVDVRDLYQLAAREQVQLRRLSYKRDSLEDIFLKAMETGNGGL"
BASE COUNT          496 a          467 c          381 g          367 t
ORIGIN      
        1 tgcgctcata accatgcacc agcaaaaacg aacgaataaa cccgcgacct gtggctcctc
       61 gcggaaacga atcaaactgc gtgcagtaac caacttttct aaacagcact tcgggccggt
      121 cggtcggtat tccaagcaac gtgacactgc cttgggtggg acgcaaaaga cctgtcatca
      181 agttcatcaa ggtcgattta cctgcaccat tgggtccaac caggctggtg ataccgggcg
      241 caatcgagag gttcactcga ttgaccccga gtatgtcgcc ataaaacttg gagacatcgt
      301 cgaagatgat tagttgattc ggctgggttg acattggtta tgaatcttac ctaaccacct
      361 cgtacgcctt cacctttctc gacaacactg ccagacaaat tgcgcaaaca agaaacaaca
      421 tgccccagca caaccacagc gggggttgag tgacaactat caatcgcacg ttgttattga
      481 aatcttcaat gcgaacggtc cctgcggtgc ggtcaaacac accgaaaaga ccatccgaga
      541 cattacccat cagcgcgatc aaactgacga gattccccca ctttgtcaga aacacctcgt
      601 tgagaaaggc actgaatact gacggaatga aaaagagccc aagaatcgca gcgctcgcta
      661 ttacacgcca tttcaccaat gctgagatgg cctgcgagat cagagccaac aagaggatcc
      721 acacaacgct cgccaaaaga attgcgctgg cgatccacag gttatctttg aaccaggtga
      781 acccttcctg gtatgcctga aatagaaaca acaacaattg cgggacccag gtaatcaagg
      841 agagcagaat gaacaatact gacatcttgc ctacgacata ctcggtcctt gaaaacggtc
      901 gacagagata tagcggcaac gcgttattcc gaagatctct ggaaactagc ggcggcccga
      961 ccaacaccgt cacaaagaac gcgaaaccgc cctgtatgta cacgaaggtt tggaagaatg
     1021 atccatcaat tggaagcaac tcgcgtattt gaatcttcat gatccccaaa gcattcatgt
     1081 tgtgatgcag gtaaatcaga attgcttcaa ccaacaaagg cacgaagcaa atcacaaaga
     1141 acgccgtgaa tatcttcgac ttgaagacac ttcgatacgc gtgacgcggg atgatcagaa
     1201 acctgctcca ctcaggagtc agtggaccgg cgtatcgttt gtaggtttgc tcataaaccg
     1261 ccattgccgg tctccattgc cttaagaaag atgtcttcca atgaatctct tttgtaactc
     1321 aagcggcgca attgaacttg ttcgcgcgcg gccagttgat atagatcccg cacatcaact
     1381 ccgccctgta acacaatctt cagccgatga tctccagtta tcgcatactc gcaacccaat
     1441 tctttaatcg cttcaacaaa cttcgcctgg tcaccgcggg tttccaacat taggaacttg
     1501 cggttggact ttcgctcctc ttccaaattg caataaacag cgatctggcc gtcacgcagg
     1561 ataagaatct cgtcgcaaca ttcctcaaca tcgagcaaca agtgcgacga caaaacgatg
     1621 gacgcttgtc cgctgtcgcg aatctcgcga atcaacttga tcattcgcaa gcgggccggc
     1681 ggatcaagac cgttcgtcgg ctcgtcaaga a
//
LOCUS       DATCGC010000581         1703 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_373978, whole genome shotgun sequence.
ACCESSION   DATCGC010000581 DATCGC010000000
VERSION     DATCGC010000581.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1703)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1703)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1703
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_373978"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(278..592)
                     /locus_tag="VIJ87_05485"
     CDS             complement(278..592)
                     /locus_tag="VIJ87_05485"
                     /inference="COORDINATES: protein motif:HMM:NF012442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HEY5443914.1"
                     /translation="MATKAATGKKRMTQSEVINHFSESTGMKRAQVKEFFEEIANLAA
                     REVKSNGEFVLPGFGKLVKSERKAREGRNPATGETIQIPAKTTLKFRVGKAMKDTVLP
                     KK"
     gene            complement(1119..1442)
                     /locus_tag="VIJ87_05490"
     CDS             complement(1119..1442)
                     /locus_tag="VIJ87_05490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443915.1"
                     /translation="MPYLELTNTTDHVLRRIEILTVFLKNEEIIGGPSLAHIRFESLE
                     SIKSQENAVIRHQTWGDGKPASPEQDQINRLKLVDGKARPYVLDISWQDVDGKSRFQR
                     IPVGH"
BASE COUNT          414 a          425 c          404 g          460 t
ORIGIN      
        1 ttaagaaccc caaatcaaag ttggcacgca gtagactgcc gcaggggtgt tcagcgaaac
       61 gcaggattat accggacgac cttcaatccg tctagaactt tttagttgtt ccgctagttt
      121 aggcagacgg gcgatggtga accacaagga agtgcctgat ggatgccatt taacctagaa
      181 gaatgtctac tgggaggtta gggaaacgac aacggcgccg cccacgatcc tattaggagc
      241 agggaaacgg cgccgtttgc tgaaaaataa tagtgcctta cttttttggc agcacggtat
      301 ctttcatcgc cttgccgact ctgaacttca gggtagtttt tgccgggatc tgaatggttt
      361 cgccggtcgc tgggttgcga ccctcacggg ccttacgttc ggacttaaca agttttccga
      421 atccggggag cacaaattcg ccgttcgatt tcacttcacg tgcggccaag ttggctattt
      481 cttcgaagaa ctccttgact tgagctctct tcattccggt tgattcggaa aagtggttga
      541 tcacttccga ttgagtcata cgcttcttgc ctgtcgcggc tttggtcgcc atagtctggt
      601 gtaacacctc caacgagaac tagatttgaa aagcaaaacg gactctcata tatcacactc
      661 aagcggcaaa gtcttcaaga aacccgcatt tccacagggt tttctgcggt ctgagggcta
      721 gagatccctc tcgaactctg tctggaagca gttcgaccat ggggaatgcc gtcaacagtt
      781 tgactgacaa cttcgttctt tcggctcatt tcggagagtc aggcccaact gcagcgacga
      841 gatgtcaaag tcgagcactt tctgctgcaa ctgccattag cttgattttc ttgagctctg
      901 tacccttaat tccgaagaat tttgccattt caagcacctg tctggagtct acaaagtcat
      961 ttgggttggc acagaatttc tgaaggcccg gataaaattc tcggcaactc atgcccttgg
     1021 gtatcttcaa atcaagccgg cattttccct cttgccaggc gtgcacacac aaatcgcaaa
     1081 caatcatttg taacagcctc atccaatcaa ttagtagcct agtgtcctac aggaatcctt
     1141 tgaaatctac tttttccgtc cacatcttgc catgaaatat ccaaaacgta cgggcgagct
     1201 tttccatcaa cgagtttcag cctgtttatt tgatcttgtt caggtgaagc cggtttacca
     1261 tccccccagg tttggtggcg tatcacggcg ttctcttgag atttgatcga ttccagactt
     1321 tcgaacctaa tgtgagccag cgaggggccc ccaatgattt cttcattctt aaggaagacg
     1381 gtaaggatct caattcggcg cagcacgtga tccgttgtat tcgtcaactc aaggtatggc
     1441 atcgagtcta gctcgatgaa gcgaaaagta aatactggtg ctggtctagt tggagtcaag
     1501 caatctttcg tttggggaat ctgctgcgag cgagccccgt tcctaagtca agttagcggc
     1561 cgatacttca ctctgataac gtccacacaa ttctttgagg aaagggacgc cattaaaggg
     1621 tggcttcgca ttcatctcga gcacacaccc cacaacggtt tcataagtca gcgctgcctg
     1681 cggcaaagaa tagttatcgg atg
//
LOCUS       DATCGC010000582         1317 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_309893, whole genome shotgun sequence.
ACCESSION   DATCGC010000582 DATCGC010000000
VERSION     DATCGC010000582.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1317)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1317)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1317
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309893"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(68..736)
                     /gene="msrA"
                     /locus_tag="VIJ87_05495"
     CDS             complement(68..736)
                     /gene="msrA"
                     /locus_tag="VIJ87_05495"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: protein motif:HMM:NF013766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HEY5443916.1"
                     /translation="MSKMIAIFLLTVVTTMFINACTSANASAVAVPNPKLDAPLAKTK
                     GEQTAVFAGGCFWGVEAVFDHVKGVSKAESGYAGGSADTAQYYTVSSGDTGHAESVRV
                     TYDPAQVTYGQLLKVFFAVAHDPTELNRQGPDVGTQYRSAIFFANDEQKKIAEAYIKQ
                     LDEAKVFEGKIATQVAPLDKFYEAEGYHQNYLVNHPNEPYIVYNDMPKLANLRKVLPE
                     LCKE"
     gene            1098..>1317
                     /locus_tag="VIJ87_05500"
     CDS             1098..>1317
                     /locus_tag="VIJ87_05500"
                     /inference="COORDINATES: protein motif:HMM:NF016430.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor"
                     /protein_id="HEY5443917.1"
                     /translation="MTDSETDLIRRAQAHDTDAFCLLAQNHLRRIYLLAFHYCHNAQD
                     AEDLSQEVWLKAYQALSTFRFDSSFYTWL"
BASE COUNT          302 a          360 c          322 g          333 t
ORIGIN      
        1 ccagtatcaa cttgagccga cgctaccgcg ttacggtact gacctcatca ccacgagatc
       61 aattcgttta ttccttacac aactccggaa ggaccttcct gaggttcgcg agctttggca
      121 tgtcgttgta gacgatgtat ggctcgtttg gatgattcac caggtagttc tgatggtacc
      181 cttcggcttc atagaatttg tcgagtggtg cgacctgcgt cgcgatcttg ccttcgaaaa
      241 ctttagcttc gtcgagttgc ttgatgtaag cctcggcaat cttcttctgt tcgtcattgg
      301 cgaagaagat ggcagaacga tactgcgtgc caacatcggg accctgccga ttcaactcag
      361 tcggatcgtg agccacggca aagaacacct tcaacaactg tccgtaagtg acttgcgcag
      421 ggtcataagt gacacgaaca gattccgcgt gacccgtgtc gcctgaagac accgtgtagt
      481 actgagcggt gtcggccgaa ccacctgcgt aacccgactc tgcttttgaa acacccttca
      541 cgtgatcaaa gaccgcctca acaccccaga aacaaccacc ggcaaagacc gctgtctgct
      601 cgccttttgt tttggcgagc ggcgcgtcaa gttttggatt tggaacggcg actgccgaag
      661 cattcgccga agtgcatgcg ttaatgaaca tagttgttac caccgttaat aaaaagattg
      721 cgatcatttt ggacatggtg ttttctccaa cactatatac gagggtaaag ggtattcgga
      781 tttcacagcg attgccagtt gacctggcac ctcaagcagt gttctgagtg ttatgcggct
      841 ttgccgcact ctgtgcgtaa agcctctggc tttcgtaaag cccgctattc ttttggcggc
      901 taagccgccc caaggcgaag cccttttcta cgtgtcgcac ggcaagcccg aggctttccg
      961 cacgggacgt ggcacggcaa caaaccatca ataattcttc cgcccggcca accaaatggc
     1021 gcaattggtg tctatgtgat tgaatccgct tctaaacggt cgtttggact ttgagcacaa
     1081 gctccacgag gtaacgcgtg accgacagcg aaactgacct gatcagacgc gctcaagcac
     1141 atgacaccga tgcgttttgc ttgctcgccc aaaatcacct gcgtcgtatt tatctcctgg
     1201 catttcacta ttgtcacaac gcccaggatg ctgaagacct ttctcaggaa gtctggctca
     1261 aggcgtacca ggcattgagc acattcaggt ttgactcatc gttctatacc tggttgc
//
LOCUS       DATCGC010000583         2881 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_76844, whole genome shotgun sequence.
ACCESSION   DATCGC010000583 DATCGC010000000
VERSION     DATCGC010000583.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2881)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2881)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2881
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76844"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1130
                     /locus_tag="VIJ87_05505"
     CDS             <1..1130
                     /locus_tag="VIJ87_05505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443918.1"
                     /translation="SNLVGTLQPSANVIAPSGPTSFGSIAGGGGTAGRDFSFTALGNC
                     GDLVTLALKLQDGAVDFGTVFYTFRLGAASSGTPLSENFDSVAAPALPGGWSSTGSGS
                     EPAWVTSTTNPFSAPNAAFAPNMTTQGVTELVSPSIHINGSPAQLSFRNAFNTESGFD
                     GGVLEISINGGAYQDILAAGGSFASGGYTGTMSGGTLNPLTGRSGWTGLSGGTTATPA
                     YITSVVNLPAAALGQNIQLKWRMGSDELIAAAGTQPGQRIDNIVVTDTSYSCTVPCGG
                     ANVVVTSTLTRMNATTVVGNISVQNIGAVTANNVVLNNAKLGATNGTPLPQSLGNLAP
                     GATATTTVNFTNSTPGASSTLVVGGTYTGGSFSTTKRVTIP"
     gene            1158..1664
                     /locus_tag="VIJ87_05510"
     CDS             1158..1664
                     /locus_tag="VIJ87_05510"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="PEP-CTERM proteins occur, often in large numbers,
                     in the proteomes of bacteria that also encode an
                     exosortase, a predicted intramembrane cysteine proteinase.
                     The presence of a PEP-CTERM domain at a protein's
                     C-terminus predicts cleavage within the sorting domain,
                     followed by covalent anchoring to some some component of
                     the (usually Gram-negative) cell surface. Many PEP-CTERM
                     proteins exhibit an unusual sequence composition that
                     includes large numbers of potential glycosylation sites.
                     Expression of one such protein has been shown restore the
                     ability of a bacterium to form floc, a type of biofilm;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEY5443919.1"
                     /translation="MKTKQLLLSILALALLAVMPAVAQADPVTLTLPSSVNVTAGGSS
                     TVIGTIANGGAPDFNISSWSINLSNPLLTFDDSAFFLSPLVLGPGASFGPTSFFDVFA
                     DISLAPGSYSGTFTVFDDEHQVNVTQTFAVNVTPAGVPEPVSIVLLGSGLSGLLISRR
                     RRKQRNDP"
     gene            complement(1794..2087)
                     /locus_tag="VIJ87_05515"
     CDS             complement(1794..2087)
                     /locus_tag="VIJ87_05515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443920.1"
                     /translation="MNTACNQAKMLRYSAGAMWTFFLLALIPFLMPVAWASNVMFFVV
                     PVGLIYWKVKFGQLQTDDKDYVRARRDCRIAFLIWSPAMAFEVVSLAIGLFAR"
     gene            complement(2513..>2881)
                     /locus_tag="VIJ87_05520"
     CDS             complement(2513..>2881)
                     /locus_tag="VIJ87_05520"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEY5443921.1"
                     /translation="MLLHSRAQHPWTIAELAKEVGLSRSSLVERFTKYLSEPPMAYLI
                     RWRLQLAARALASTSRGVAEIAEDVGYESEAAFNRAFKREFGSPPARYRKEHRSANDQ
                     GNSLPAWQKLERAYSSRTMG"
BASE COUNT          689 a          772 c          763 g          657 t
ORIGIN      
        1 cttcaaatct cgttggcact ctgcaaccaa gcgccaacgt gatcgccccg agtggaccaa
       61 cgagctttgg ctcgatcgca ggcggtggcg gtacagccgg gagagacttc tcgttcaccg
      121 cactgggtaa ttgcggcgac ctggttacgc tcgccttaaa gctgcaagac ggtgcagtcg
      181 acttcggaac tgttttctat actttccgtc tcggcgccgc tagttccggt acaccgttgt
      241 ctgagaactt cgacagcgta gctgctccag cattacccgg aggctggtca tcaacgggct
      301 cgggttctga acctgcttgg gtcacttcaa cgacgaatcc gttcagtgcg cctaatgcgg
      361 cctttgcccc caatatgaca acccaaggtg tcaccgaact ggttagccct agcattcaca
      421 taaacggttc gcccgcacag ctgagcttta ggaacgcctt caatacggaa agtggatttg
      481 atggaggtgt cctcgagatc agcatcaacg gcggagctta ccaggacatc cttgccgcag
      541 gtggaagctt cgcttccgga gggtacaccg ggacaatgtc aggaggcacg cttaacccgt
      601 taacagggag aagtggttgg acaggtttgt caggcggtac gacggccacg ccagcttaca
      661 taacatcggt ggttaacctg ccggctgcgg ctcttggtca gaatattcaa ctgaagtggc
      721 gtatgggttc agatgaactc atcgctgctg caggtactca acctggccag cgtatcgaca
      781 acatcgtagt caccgacacc agctattcct gcacggttcc gtgcggaggc gcgaatgtcg
      841 tggttacttc aacgttgacg cgaatgaacg caacgacagt ggttggtaac atcagcgtcc
      901 aaaacatcgg agctgtgacc gccaataacg tcgtgttgaa taatgccaag ttgggcgcaa
      961 cgaacggaac gccactgccg cagtcactgg gcaatctggc gcccggagca acggccacca
     1021 cgacagttaa ctttactaat tcaacaccgg gagcaagttc cacactcgtt gtgggtggaa
     1081 cttacaccgg cggaagcttc agcactacaa aacgcgtcac catcccgtga caggagaaca
     1141 gaaagcaggt aaaccctatg aaaacaaaac agctgttatt gagcatattg gccctggcac
     1201 tgctggcagt aatgccggca gtggcccagg ccgatccggt aactttgact ctgccaagtt
     1261 ctgtgaacgt aacagccggc gggagcagta ccgtgatcgg cacgatcgcc aatggagggg
     1321 caccggactt caacatcagt tcgtggtcaa tcaacttgag caatcctttg ttaacgtttg
     1381 acgactcggc gttcttcctt tccccgttag tattgggtcc gggagcgtca tttggtccaa
     1441 cctcattctt cgatgtgttt gctgacatta gcctggcgcc gggttcttac tcgggcacct
     1501 ttacggtgtt tgacgacgaa caccaggtaa acgtcacgca gacgtttgcc gtcaacgtta
     1561 caccggcggg agtacccgaa ccggtttcta ttgtgttgct cgggagcggc ttgagtggac
     1621 ttttgatctc ccgtagacgg cgcaaacagc gaaacgatcc ctgagggggt tcgtactcct
     1681 gctacgaatc tcttcgtcac gggaagagaa taaccggacg gtgaaacctc gccgtccggt
     1741 tttcctttgt ttcggcgctg agaacttttc gacaactggt tttgatgtgt ggtttacctg
     1801 gcaaacagac caatagctaa cgaaactact tcgaatgcca ttgcaggcga ccatatcaag
     1861 aacgcaattc ggcaatcgcg cctggcgcgc acgtagtcct tatcatcagt ttgaagctga
     1921 ccgaacttca ccttccagta gatcaaccca acgggaacca caaaaaacat tacgtttgat
     1981 gcccatgcga ctggcataag gaagggaatc aacgcaagca gaaagaacgt ccacattgct
     2041 cccgcgctgt aacgcaacat ctttgcttga ttgcaggcgg tgttcactcg tttttgtaaa
     2101 tccgcaccct gtgcagcaac tcgactatct aaggttacag aacaaaaccg acagctgttg
     2161 gcgtcgctgt aaatcatctg tcggcagctg ggacatggaa aaatgccagc tctagaaaca
     2221 agtattgatt cgctcatgga atatcacctt tctcacgacc taccgtgatc agttagttaa
     2281 ttcggcccgt cacaatacag tggcgtgatc gttcaaacga tcacgcgaca tgcgcgatct
     2341 actcactaat ctgaggttca tgtgatttca ctgaggctcg tgctgtgcgc aggcgtccaa
     2401 ggctgcccta ttgttcgagg aataaagtaa ctgcatcagt actcaaaagg ttgaagcact
     2461 ggaaacaatg aaagtgtgtt tttgtgcggt gagagaatag cggcgcggta tttcagccca
     2521 tcgttcggct tgaatacgca cgttctagtt tttgccaggc aggaagtgaa ttcccctgat
     2581 cgtttgcgct ccggtgctct tttcgatagc gggccggcgg cgaaccaaat tcgcgcttga
     2641 acgcgcgatt gaaagccgct tcagattcgt aaccaacatc ttcggcaatt tctgccacgc
     2701 cgcgcgaagt cgacgcgagg gcgcgcgcag ctagttgcaa ccgccagcga atcagatagg
     2761 ccatcggtgg ctcagaaagg tatttcgtga agcgttcgac caaagaggag cgcgacaaac
     2821 caacttcctt agccaactcc gctatggtcc atggatgctg agcgcgtgag tgcagaagca
     2881 t
//
LOCUS       DATCGC010000584         2928 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_441214, whole genome shotgun sequence.
ACCESSION   DATCGC010000584 DATCGC010000000
VERSION     DATCGC010000584.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2928)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2928)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2928
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_441214"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..439)
                     /locus_tag="VIJ87_05525"
     CDS             complement(<1..439)
                     /locus_tag="VIJ87_05525"
                     /inference="COORDINATES: protein motif:HMM:NF025052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY5443922.1"
                     /translation="MKVLVFGNSGSGKSTYARALAARESLAHLDSDSIVWGLGDPGKI
                     AVLKRAIATGASTRQLQRPDEAVAASLRNFIDSHAAWVIEGCYGKLIRAASAHCTLLV
                     FLNPGIDACLANNLKRPWEPHKYASLELQNSMLDQLQKWVAEYY"
     gene            complement(457..825)
                     /locus_tag="VIJ87_05530"
     CDS             complement(457..825)
                     /locus_tag="VIJ87_05530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443923.1"
                     /translation="MKVYNLIAFLLIPLAPSQAVSAGDMRKTSTGKAETGAIVSAATD
                     YVKRNSGRNMEFRITIKDVSGDFARARVDPLKKETDPALVYLKRTGGKWDGLTIGTSF
                     QNSDLKELGVPKNLWRWNHD"
     gene            complement(946..1335)
                     /locus_tag="VIJ87_05535"
     CDS             complement(946..1335)
                     /locus_tag="VIJ87_05535"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEY5443924.1"
                     /translation="MRAQSAIALVMITSVQLWPAHAYAADRDAVGRAYTLQMNDVARR
                     VVLAELVKHPERIHRMSVKCTFQLDRQGHPQNVKVVSNTHNRWAEDTARRALAAAKFP
                     PLPKSLVQQSGTDKASFDYQLDLGEPR"
     gene            complement(1445..1780)
                     /locus_tag="VIJ87_05540"
     CDS             complement(1445..1780)
                     /locus_tag="VIJ87_05540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443925.1"
                     /translation="MSNGIVSLTLGVFLLLVGGCGQKGGIEGEYVDVDSPDLSMIIKG
                     GRFQQGGADIHTTGTYTMRQINENTHELDVSYTNPKLQGHKSTITIVRDGDFITAKNR
                     YEERKFKRK"
     gene            complement(1932..2399)
                     /locus_tag="VIJ87_05545"
     CDS             complement(1932..2399)
                     /locus_tag="VIJ87_05545"
                     /inference="COORDINATES: protein motif:HMM:NF024865.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEY5443926.1"
                     /translation="MRPALFIALLVLTVAPMGVGQKQSERDSHRTSVEETIRKLDNER
                     IQAQIHADATALDRIYATDFIGVGPSGTVRTKPQVILDFTSGNLKFQSITTDDVQVRV
                     YGNTAVETGRSTMNGQDKGQTVPRDTRFTRVWVKQQGRWRLVANHYSSQTTRQ"
     gene            complement(2531..>2928)
                     /locus_tag="VIJ87_05550"
     CDS             complement(2531..>2928)
                     /locus_tag="VIJ87_05550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443927.1"
                     /translation="WKDISNTVPVAFMGSAGAMISDMNDIRHWIELYATGKTCGSGTY
                     NDLINCIPFLGNTSFGLGITCSEGWYGYTGALPGYNTADYYSPETGITIVAWINYQAT
                     EPVEGVASVMVRDIAKILTPDHVPFVYKK"
BASE COUNT          637 a          788 c          763 g          740 t
ORIGIN      
        1 gataatactc ggccacccac ttttgaagtt gatcaagcat gctgttttga agctcgagcg
       61 aagcgtactt atgtggctcc cagggccgtt tgagattgtt tgccaggcac gcatcgatcc
      121 cagggttgag gaagaccagc agcgtgcaat gagccgacgc tgctcgaatc agtttgccgt
      181 agcagccttc aatgacccag gcagcgtggg aatcaatgaa gttgcgaagg gaagctgcga
      241 cagcttcatc cgggcgctgc agctgccttg tcgacgcccc ggtggcgatc gcgcgtttca
      301 gcacagcaat cttgccgggg tccccaagcc cccaaacaat cgagtccgag tcaaggtgag
      361 ccaggctctc tcgcgcggca agggcgcgtg catacgtgct ctttccggag ccagagttgc
      421 cgaagacaag cactttcata cggtctcctg cgcgatctaa tcatgattcc atcgccaaag
      481 gtttttggga acaccaagct ctttgagatc tgaattctga aagcttgtcc cgatggtaag
      541 tccgtcccat ttacctcccg tcctcttcaa ataaacaagc gcgggatctg tttctttctt
      601 taacgggtcc actcgagcac gcgcaaaatc gccactcacg tctttaatgg tgatacgaaa
      661 ctccatgttt cgacctgaat tccttttcac ataatcagtg gcagcagata caattgcgcc
      721 ggtctctgcc tttcctgttg aagtcttccg catgtcccct gcggatactg cttgtgatgg
      781 agccagggga attaagagaa atgcaatcag attatagact ttcataagta tcgcctaacg
      841 agaagtacat aagccgcgac aggcgacgac gagctctgct ttcacttcct ccttcatact
      901 tgccacggag caggctgccg ttggttcatc gattggttag acccgttatc gtggctcacc
      961 aaggtcgagc tggtagtcga agctggcttt atcggtgccg gattgctgga cgaggctttt
     1021 cgggagtggc ggaaactttg cagcggcaag agctcggcgg gccgtgtctt ctgcccatcg
     1081 attatgggtg ttcgagacaa ccttcacgtt ttggggatgg ccttgtctgt cgagttggaa
     1141 tgtacatttc acggacatgc gatgaatccg ttcaggatgc ttcacgagct ctgcaagcac
     1201 cactcgacga gctacgtcat tcatctgaag tgtatacgct cgcccgacgg catccctgtc
     1261 tgccgcgtac gcatgcgctg gccagagctg cactgacgtg atcataacca aagctatcgc
     1321 cgattgagca cgcatgggtc taacgagata taagatcagc gaccgggagt cctgtaaagc
     1381 tctcgtcgcg gacaacggac aaatggcaaa cactcaaggt aaaagagcga acgtctcggc
     1441 acgctcactt tcgcttgaac ttgcgctcct catagcgatt cttcgccgtg atgaaatcgc
     1501 cgtcacgaac aatcgtgatc gttgacttgt gtccctgaag tttgggattg gtatatgaca
     1561 cgtccagctc gtgggtgttt tcgttgatct gccgcatcgt atacgtgccg gtggtgtgaa
     1621 tatcagctcc gccctgctgg aagcgtccgc ctttgatgat cattgacagg tcggggctat
     1681 ccacatcgac atactcgcct tctattcctc ctttctgtcc gcacccgccg acgagtaata
     1741 ggaaaacacc tagcgttagc gaaactattc cattgctcat cttcggactc cttcggctaa
     1801 cgagaagggg ctgagccacc gctggcggcc agcgtggctt tcacttcatc cttcataatt
     1861 catccttcag cctttcaata cgacggtcag cggctggctc cagggattgg ttaggcattt
     1921 ggtgtgactg cttattggcg cgtagtctgg gacgagtaat ggttggcaac caaccgccag
     1981 cgcccttgct gctttaccca caccctggta aagcgagtgt cacggggaac agtttggcct
     2041 ttgtcttgcc cattcattgt tgagcggcca gtctccacag ccgtgtttcc atagacgcgc
     2101 acttgaacgt catcggtagt gatagattga aatttcaaat tgcctgacgt gaaatctaaa
     2161 atcacctgcg gcttggttct cactgtgccg cttggcccta cacctatgaa gtcggtagcg
     2221 tagatgcgat caagggctgt cgcatcagca tgaatctgcg cttgaatgcg ttcgttatcc
     2281 agtttcctga tggtctcctc gacacttgtt ctatgactgt ccctctcgct ctgcttttgc
     2341 cctacgccca taggggccac tgtaaggacg aggagagcta taaagagtgc tggtctcacg
     2401 tagagttctc cataagccta acgagaatta gactgcatct ctattcctgc ctccatagag
     2461 cgaatatcgt cagaaaggct gcaggctggc aagtcgcgtt catcttgcga atcgatcagg
     2521 atttggtggg tcactttttg tagacaaatg gaacatgatc gggcgtgagg attttagcga
     2581 tgtcgcggac catgacgctt gcaacgcctt caaccggctc cgtagcctgg tagtttatcc
     2641 atgcaacgat cgtaatgccc gtctccggcg agtagtaatc cgcggtgttg tagccgggaa
     2701 gcgcgccggt gtagccgtac caaccttcgc tgcacgtaat tcccagacca aaagaagtat
     2761 tccccaaaaa tgggatgcaa ttgatgagat cgttgtaggt cccggatccg cacgtcttgc
     2821 cggtggcgta cagttcgatc caatgcctga tgtcgttcat atctgaaatc atcgcgccag
     2881 ccgatcccat gaacgcgact ggaaccgtgt tgctgatgtc tttccagt
//
LOCUS       DATCGC010000585         1008 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_76870, whole genome shotgun sequence.
ACCESSION   DATCGC010000585 DATCGC010000000
VERSION     DATCGC010000585.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1008
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76870"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..228)
                     /locus_tag="VIJ87_05555"
     CDS             complement(<1..228)
                     /locus_tag="VIJ87_05555"
                     /inference="COORDINATES: protein motif:HMM:NF024759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GxxExxY protein"
                     /protein_id="HEY5443928.1"
                     /translation="MEINDLTHTVIGCAYKVHNVLGFGLLEQCYENALRIELEKLGIR
                     ALQQHELNVWYEDQIVGEYKPDLWLPEKLIIE"
     gene            complement(354..>1008)
                     /locus_tag="VIJ87_05560"
     CDS             complement(354..>1008)
                     /locus_tag="VIJ87_05560"
                     /inference="COORDINATES: protein motif:HMM:NF025217.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEY5443929.1"
                     /translation="ITVGFGDVVAPGEVVGTELEQTQIAIARENARKENVSNVRFETA
                     DLYALPFADASFDAVFISAVLANLKEPIRGVIEAFRVLKPGGVIGVKDFDHGGDLIYP
                     ADPAIEKYGELYVRMRLDNGHDPNSGRKISALLIEAGFSELKFSAVYETFTGPRAAAF
                     AQFSVGLLTESWGNEFTSRSWATKEDIQEMINAWTKFANTPGAIFGAAWCEAVARKT"
BASE COUNT          258 a          270 c          226 g          254 t
ORIGIN      
        1 ttcgattatc agcttctcag gcagccatag atccggtttg tactcaccga cgatctgatc
       61 ctcataccag acatttagtt cgtgttgctg caacgcgcga ataccgagct tctccagctc
      121 tattctcagc gcgttctcat aacattgttc gagtaaaccg aatccaagaa cgttgtgaac
      181 cttgtaagcg catccgataa cggtgtgagt gaggtcgttg atctccatcg tatcctccag
      241 tgagaaaagg aatgtttgac aggacaagca gaatttacag gagatcaaac taaattgtga
      301 agggtaggac tcgtgattcg tattgccatc ctgtgaattt tgtaatcatg tctttaagtc
      361 ttccgtgcga ctgcttcaca ccaggcagca ccgaagatcg caccgggcgt atttgcgaat
      421 ttggtccagg cgttgatcat ttcctggatg tcttctttcg tagcccagct tcggctcgta
      481 aactcgttgc cccagctttc cgtaagcagt ccaactgaga attgagcgaa ggcagctgca
      541 cgcgggccgg taaaggtctc gtacacagct gagaacttta gctcactaaa tcccgcctcg
      601 atcagcagcg cacttatctt tcgaccagag ttgggatcat gaccattatc caatctcatg
      661 cgtacgtaga gttcgccata cttttctatc gctgggtccg ctggatagat cagatccccg
      721 ccgtgatcga aatccttaac accaataaca ccgccaggtt tcaaaacacg aaaggcttca
      781 atcacaccac gaatcggttc cttcaaattc gcaagcactg cggaaatgaa cacagcatcg
      841 aaagacgcat cagcaaaagg cagtgcatag agatcagcag tttcgaacct gacgttcgaa
      901 acgttttcct ttctagcatt ctcacgtgcg atcgcaatct gtgtctgttc aagctcggtg
      961 ccaacaacct cgccgggcgc gacaacgtca ccaaagccga ccgtgatc
//
LOCUS       DATCGC010000586         1202 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_407334, whole genome shotgun sequence.
ACCESSION   DATCGC010000586 DATCGC010000000
VERSION     DATCGC010000586.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1202)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1202)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1202
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407334"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1202
                     /locus_tag="VIJ87_05565"
     CDS             <1..>1202
                     /locus_tag="VIJ87_05565"
                     /inference="COORDINATES: protein motif:HMM:NF039587.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF5916 domain-containing protein"
                     /protein_id="HEY5443930.1"
                     /translation="KYTLTPTVTLDFAINPDFAQVESDQLVVTANQRFPIFFPEKRPF
                     FLEGIDIFQTQIAAVHTRTIVDPDFAVKTSGKLGRNTFGLMVASDNGPGNISEDERGV
                     LNACLERQRLNPDLVCSNARIVDQNANVAVLRLKRDIGKSDSFVGFLGTYRRFVDQYN
                     QVGGLDGRFRIDKQTTFSWQALGTRTRDNFFYPDEGKTRDSVQNGFIYAVNYDQGGRH
                     FGQQFSMVGRTQYYRADVGFNRRTDTNNPNWFIRYNSEPKPKAKLISWRVYTDFNANF
                     DWNGSSQNFNNETQVQFQLYKQTYFGSGVDFGYDRVFEREFGAARQPGSNCVALNTCT
                     FAGDDNERSSPTKGLYAFGGSNPSKKYNFNFFLGRFWGSTDFDFGAGPKFPRVSPTAI
                     AQRTAIAT"
BASE COUNT          303 a          302 c          303 g          294 t
ORIGIN      
        1 caagtacacc ttaaccccta cggtcacgct cgactttgcg attaatcccg actttgcgca
       61 ggttgagtct gaccagttgg ttgtgaccgc taaccaacgt ttcccaatct tctttcccga
      121 gaagcgcccg ttctttctgg aaggcatcga catctttcaa acgcagatcg ctgctgtgca
      181 cacgcgcaca attgttgacc ccgactttgc ggtaaagact tctggcaagc ttgggagaaa
      241 tacgtttgga ttgatggtgg ccagcgacaa tggtcccgga aatataagtg aagatgagcg
      301 aggtgtgctg aatgcttgtc ttgaacgaca acgtctaaac cccgacctgg tttgtagcaa
      361 tgcgaggatc gtcgatcaga atgccaacgt tgcggtttta agactaaagc gcgacatcgg
      421 gaaatcggat tcgtttgtcg gattcctcgg tacctatcgc cggttcgtcg accaatacaa
      481 tcaggtcggt ggacttgacg gtcgtttccg tatcgacaag cagacgactt ttagttggca
      541 agcactggga acgcgcacgc gagacaactt tttctacccg gacgaaggca agacgcgcga
      601 cagcgtgcaa aacggattca tttacgcggt gaattatgat cagggcggtc gtcactttgg
      661 tcaacaattt tcaatggttg gtcgcacgca gtactaccgc gcagatgttg gtttcaatcg
      721 ccggacagat accaacaatc caaactggtt cattcgctac aactcggagc caaagccaaa
      781 agcaaaattg atctcgtggc gtgtctacac cgacttcaat gcaaacttcg actggaacgg
      841 gagctcacaa aacttcaaca acgaaaccca ggttcagttt cagttataca aacagacata
      901 cttcggcagt ggtgttgact ttggttatga cagggttttt gagagagagt ttggagctgc
      961 gcgtcaaccg ggttccaact gcgtggccct gaacacatgt acattcgcgg gcgatgacaa
     1021 cgaacgctcg tcgccgacta aaggtcttta cgcattcggt ggctcaaatc caagcaagaa
     1081 gtacaacttc aatttctttc ttggtcgttt ctggggatca actgattttg atttcggcgc
     1141 cggtccaaag tttccacggg tgagtccaac cgcaatcgcc caacgtacgg cgatagcaac
     1201 tg
//
LOCUS       DATCGC010000587         1133 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_274256, whole genome shotgun sequence.
ACCESSION   DATCGC010000587 DATCGC010000000
VERSION     DATCGC010000587.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1133
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_274256"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(259..>1133)
                     /locus_tag="VIJ87_05570"
     CDS             complement(259..>1133)
                     /locus_tag="VIJ87_05570"
                     /inference="COORDINATES: protein motif:HMM:NF013720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycine cleavage T C-terminal barrel
                     domain-containing protein"
                     /protein_id="HEY5443931.1"
                     /translation="HHWMPAAFPNVQGRLIAAVRVIRLANETEKSPRFLLDTEAATHQ
                     AVLKTIERFTMAGDFRVTDITGTTATLSLQGRHGAEIARKVFGDSLAQLDRNGVAETN
                     WNETNVTVVRSSHTGEDGFDIVVDSTVSDDLSQALIDAGAVFLHDDTLETLRIEAGIG
                     HFGQDMDETNVITEVNLDDAISFTKGCYIGQEIIIRIKHRGHVAKKLTGLTFDDRENV
                     DVGAIIKSGEGKDIGRITSTAYSPLLAKTIAFGYVRYEHLASDTEVVVGENGIEAKVT
                     DLPFVRGSWYEDEV"
BASE COUNT          241 a          300 c          281 g          311 t
ORIGIN      
        1 ttgagtaggc aagttgtgcc tgcgcgaagt cgatgtcttt tggggttgaa gcttctgaca
       61 tggttacggt tatttgaagg gcgatctccg tgtcctctgc gtctctgtgg tccctgcgtt
      121 aattcctttc cggcattaat aaatgttgag ctttcctgag ttccacaagc agatattcaa
      181 agaaactttc tgatgcgcta ttgatttgcc aacgcatgca tttctaaggt caaagagaaa
      241 taaccagcgg cgtcgtagct agacttcatc ctcgtaccaa ctgccgcgca caaacgggag
      301 gtcggtcact ttcgcctcaa tcccattttc accaacgaca acctccgtgt cggacgcgag
      361 atgctcgtat ctcacatacc cgaacgcaat tgtcttagcc aacagtggcg agtaagcagt
      421 tgacgtaatt cgcccgatgt ccttgccttc gccggatttg ataatcgctc cgacgtctac
      481 attttctcga tcatcaaacg taaggccggt tagtttcttt gcgacgtggc cgcgatgttt
      541 gatgcgaata atgatctcct gaccaatgta gcaacctttt gtgaagctga ttgcgtcgtc
      601 gaggttcact tcggtaatca cgttcgtctc atccatgtcc tgaccgaagt gaccgatgcc
      661 cgcctcgatt cttagtgtct cgagagtgtc gtcgtgcagg aacacagcgc cggcatcaat
      721 tagtgcttgc gagaggtcgt cggaaactgt gctatcaacg actatgtcga atccatcctc
      781 gccggtatga ctggaacgta ccacagttac gttagtttca ttccagttag tttcagccac
      841 cccgttgcga tctaactgcg ccagtgagtc tccgaatacc ttgcgggcta tttccgctcc
      901 gtgccttccc tggagtgaaa gcgtcgcagt cgtgcctgtg atgtcagtaa ctcgaaaatc
      961 gcccgccatc gtgaaacgct cgatcgtttt caacacggcc tggtgagtgg ctgcttctgt
     1021 gtcgagaaga aaccgcggac tcttttcagt ttcatttgcg agtcgaatca cacgtaccgc
     1081 ggcgatcaac ctgccctgga cgtttggaaa tgcggcgggc atccagtggt gtt
//
LOCUS       DATCGC010000588         1146 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_141303, whole genome shotgun sequence.
ACCESSION   DATCGC010000588 DATCGC010000000
VERSION     DATCGC010000588.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1146)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1146)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1146
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_141303"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            403..>1146
                     /locus_tag="VIJ87_05575"
     CDS             403..>1146
                     /locus_tag="VIJ87_05575"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HEY5443932.1"
                     /translation="MEHKSNILVVDDNPDKLHLLEAALRLAGYSVTTATDGDEALSSI
                     ETYQPDLVITDVMMPRMNGYELAQRIRGNPLTKFIPVIMQTAAGRRVEDLRRASEVGA
                     LGYITDPTDLDLLLARTRTLLEFKAYLDVCEEQAFTDHLTGLANRRHFERQLEREVSR
                     SMRLGHSFVLLMVDIDNFKNLNDSFGHNVGDEAIRRIGKVLREGTRGIDLAARFGGEE
                     FAILLVETELSRGLEVAERLRVAISNMSIP"
BASE COUNT          287 a          274 c          313 g          272 t
ORIGIN      
        1 agttagttgc tagatctgaa ataagggaat cgtttagcga tgatccaaac ccgagttgac
       61 gaattattac tgcacggtct gcgggagtca gatcccgtgc acgcttttga tcttgcacga
      121 ctttcatgtg cctatccctc agggggtgga tttacaaaag gtattttgaa tcggctattg
      181 caccgtgact gcgcatatcc aaggtggtcc atgcgggttc agttgcgatt gaaaattgta
      241 aggagacccg cgcgacatct aacagggttg tctcatcggc gatatgtact ttgactcaat
      301 acttggcgag tgccggcacg aaactaatta accgattggc cgaactgtag catgaagcag
      361 aaaggggcgc aaccctaata acggtccaac ttttaaggaa atatggagca taaatcaaac
      421 attctagtag tcgacgataa cccagataag ctgcatctcc tcgaggctgc attgcgcctt
      481 gcaggttaca gcgtaaccac tgcaaccgac ggtgatgagg cgctgtcgtc aattgaaact
      541 taccaacccg acctcgtgat aacagacgtc atgatgccgc gaatgaatgg ttatgaatta
      601 gcccagagga tccgcggaaa tcctctcaca aagtttattc ccgtcatcat gcaaacagct
      661 gccgggcggc gtgttgagga cctgagacga gcctctgaag tcggggcgct gggctacatt
      721 accgacccaa ccgatttgga tctgctgtta gccagaacca ggaccctgct cgagtttaaa
      781 gcctacctgg atgtttgcga ggaacaggcg ttcactgacc acttaacggg gcttgcaaac
      841 cgtcgccact tcgaacggca actcgagcgc gaggttagtc gaagcatgcg tcttggacac
      901 tcgttcgttt tgttgatggt cgacattgat aacttcaaga atctgaacga ctcctttggc
      961 cataatgtcg gcgacgaggc aatccggcgg attggcaagg tgcttcggga ggggactcgc
     1021 ggcatcgacc tagctgccag gtttggaggg gaggagtttg ctatcctgtt agttgaaacc
     1081 gagctaagcc gtggattgga agtcgcggaa cgcttgaggg tggctattag caacatgtca
     1141 atcccg
//
LOCUS       DATCGC010000589         1450 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_107988, whole genome shotgun sequence.
ACCESSION   DATCGC010000589 DATCGC010000000
VERSION     DATCGC010000589.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1450)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1450)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1450
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107988"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1325
                     /locus_tag="VIJ87_05580"
     CDS             <1..1325
                     /locus_tag="VIJ87_05580"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY5443933.1"
                     /translation="VDDSATPSPFSPDNTNFGYLLQRIAEKAIRSSVVIYAVDSGGLQ
                     YTGLTAADNLSGISARQMNQRISSTLTSRSLLLQTRREGAELIAKETGGFLVHNSNDF
                     QLDRIMEDQSGYYLIGYRPTDETFNRKFHHIKARVKKSGMTLRTRYGFFGVSEDEVAR
                     SKRTPVDKTMLALLSPFRAQELPVDLNAFFTNDKSGSYIRLFVVLQAKDLMFRETSEG
                     WHEASVQLREMIFGNNGAVADQQTFDRTISLRGDTYDQALREGIMFHLDLPVRRPGAY
                     QVRVAARDIATSKVGAAGQFVEIPDLNNRQLALSGIVLAGATDGDSSNAKESKMGPTV
                     RRYPSGSNVRFGFGIYNALIDPASHQPNVTIQMQLYRDGKQVFSSPIMPVDTTKQADL
                     ARIVTTGVLSLNPELDPGPYYLQIIATDTLAKEKHSQAVQWIDFEIVK"
BASE COUNT          367 a          365 c          392 g          326 t
ORIGIN      
        1 atgttgatga ctcagccacc cccagtccat tttcacccga caacacgaac ttcgggtatc
       61 tcctccaacg tatcgcagaa aaagcaatcc ggtcgtcggt agtgatctat gcggtcgatt
      121 ccggcggatt acaatacacc ggcctgactg ctgccgataa tctcagcggg atctcggcac
      181 ggcaaatgaa ccaacggatc agcagcacgt tgacgtctcg ctcgctgttg ctccaaacgc
      241 ggcgcgaagg agctgaacta atcgccaagg aaaccggcgg attcctcgtt cacaattcaa
      301 acgatttcca actggatcgc atcatggaag atcagagtgg ctactatctg atcggttacc
      361 gaccgaccga cgagacattc aatcgcaagt ttcatcacat caaagcgcgc gtgaagaaat
      421 caggaatgac tttacgtaca cgctatggct tttttggggt aagtgaagat gaagtcgctc
      481 gctcaaagcg aacaccggtc gacaagacca tgcttgcttt gttgtctccg tttagagcgc
      541 aggaactccc cgtcgacctg aatgcattct tcactaatga taagtccggg tcatacatca
      601 gattatttgt tgtgctgcag gcaaaggacc ttatgttccg cgagacgtcg gaaggttggc
      661 acgaagcatc agttcaattg cgagaaatga tttttggaaa caacggcgca gtcgcagatc
      721 aacagacgtt cgaccgaacg atcagtttac gtggcgacac gtatgatcag gcgctgcgcg
      781 aagggatcat gtttcatcta gatttgccgg taagacgtcc gggtgcttat caagtgcggg
      841 tggcagctcg cgatatagct acgtcaaaag tcggggccgc tgggcagttt gtcgaaatac
      901 ccgatctgaa taatcgtcag ctggcattat cgggaatcgt actggctggc gcgaccgacg
      961 gcgatagtag taatgctaaa gaatcgaaaa tgggtcccac agttcgacga tacccttccg
     1021 gctcaaatgt acggtttgga tttggcatct acaacgcgtt gattgatccg gcaagtcacc
     1081 agccaaacgt gacgatacaa atgcagcttt accgcgatgg gaaacaagtt ttctccagcc
     1141 cgatcatgcc ggtggacacg acgaagcagg cagacctggc gcggatcgtt accaccgggg
     1201 tgctttcact caaccccgaa cttgaccctg gtccttacta tttacagatc atcgctacgg
     1261 atacgttggc aaaagagaag cattcgcaag cggtgcagtg gattgatttc gagatcgtga
     1321 agtaggactt gggatttggg tcttgggact tggctttttg gacgccgctg tggcttgaac
     1381 aagcggggaa gggggcagcg gaagattgga cgcctcacaa atgtgatccc gagcgcgccc
     1441 ccgcaggaga
//
LOCUS       DATCGC010000590         1143 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_441314, whole genome shotgun sequence.
ACCESSION   DATCGC010000590 DATCGC010000000
VERSION     DATCGC010000590.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1143
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_441314"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..596
                     /locus_tag="VIJ87_05585"
     CDS             <1..596
                     /locus_tag="VIJ87_05585"
                     /inference="COORDINATES: protein motif:HMM:NF024578.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEY5443934.1"
                     /translation="SNGTKSLDDVMRYLLTEYYKKDRNYGPQDFQKVCEMMAGSSLEE
                     FFARYVRGREELDYNAALNAAGLHLETTTPGDGGKPVERAFFGADTVWEDNKLIVRRV
                     FAGSPAYDQGLNTGDQIIALNNMRVVTKEFFDARIAEKKPADLINLTIFRFDDLSTLL
                     IKLGGRTEGTYRIVPMATQTESQKQIYKSWIGTSISQ"
     gene            697..>1143
                     /locus_tag="VIJ87_05590"
     CDS             697..>1143
                     /locus_tag="VIJ87_05590"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HEY5443935.1"
                     /translation="MPYEHIHLSIDDRVARITFDRPPLNIFNIAMMREVGAALSELSS
                     LKLVAIVFDAAKDSRAFSAGVAVEDHTQDTVYQMLDSFHAVFRMLEQLAKPTIALVDG
                     PALGGGCELVSACDIVIASSRAKFGQPEIKLGVFPPVAAVVLPLVIG"
BASE COUNT          281 a          269 c          310 g          283 t
ORIGIN      
        1 aaagcaacgg aacgaagtcg cttgacgacg taatgcgtta tctgttgact gagtactaca
       61 agaaagatcg aaactacgga ccgcaggact ttcaaaaggt gtgtgagatg atggcgggtt
      121 ccagcctgga agaatttttc gcgcgctatg ttcggggtcg tgaggaactt gattacaatg
      181 ccgcccttaa cgcagcgggt ctgcacttgg aaacaacgac accaggtgac ggaggcaaac
      241 cagttgagcg ggcgttcttt ggcgctgaca cagtttggga agacaacaaa ctaattgtcc
      301 gaagggtctt tgctggatca cccgcctacg atcagggatt gaataccggg gatcagatca
      361 tagccttgaa caacatgcgc gtcgtcacta aggaattctt cgatgcccgg atcgcggaga
      421 agaagccggc cgatcttatt aacctgacga tttttcgttt tgatgatctt agtaccctgc
      481 tgataaagct cggcggtcgt accgaaggca cttatcgcat tgtgccgatg gccactcaaa
      541 ccgagtcgca gaaacagatt tacaaatctt ggataggtac ctctattagt caatgagtca
      601 aatgtggact taggtcttcg gtcttaggtt ttgacgagag gtatcgagag cacgaaaacc
      661 caagaccaaa aaccaaagtc caaagtcgaa gtttccatgc cctacgaaca catccacctg
      721 tcaattgacg atcgcgtagc tcgcatcact ttcgatcgtc ctccgctcaa catcttcaac
      781 atcgcaatga tgcgggaggt tggcgcggcg ttgagtgagc tttcatctct gaagctcgtt
      841 gcgattgttt tcgacgcggc caaggatagt cgggctttca gtgccggcgt cgcggtggaa
      901 gatcacacgc aggacactgt ctatcaaatg ctcgattcgt ttcacgctgt gttccgaatg
      961 ttggagcaat tggcgaagcc aacgattgca ttggtggatg gcccagcgct aggtggcggc
     1021 tgtgaacttg tttcagcctg cgacatagtg attgcttcga gtcgagcgaa gtttggtcaa
     1081 ccggaaatca aactgggtgt tttccctccc gttgctgcag tggttttgcc attggtaatc
     1141 ggt
//
LOCUS       DATCGC010000591         1268 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_176165, whole genome shotgun sequence.
ACCESSION   DATCGC010000591 DATCGC010000000
VERSION     DATCGC010000591.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1268)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1268)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1268
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176165"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..823
                     /locus_tag="VIJ87_05595"
     CDS             <1..823
                     /locus_tag="VIJ87_05595"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY5443936.1"
                     /translation="AASGKYSLGTEQAVALTDENSPFFVGGGFFVIKAMSQAVERIEG
                     HFRDGGGMLWGEHHPDLFIGTARFFRPGYVAHLTASWIPSLTGVEEKLKAGGKVADVG
                     CGLGTSTIIMAQAYPNSEFWGFDNHDGSITLAKKAAEEAGVEDRVHFEVTTAQSIPDN
                     QYDLVAFFDCLHDMGDPVGACKRAVEVLGPNGVALIVEPMAGNTVEENFNPIGRTFAG
                     ASTLCCTSNSLAQDGPALGAVATEEAIREKVLAGGFTQFRRATETPFNRIFEARK"
     gene            974..>1268
                     /locus_tag="VIJ87_05600"
     CDS             974..>1268
                     /locus_tag="VIJ87_05600"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEY5443937.1"
                     /translation="MDRRIELVISKIDSDPGSCSLPALSALVLLSPSRLRHLFKQETG
                     TTPSHYLKTARLVKAELLLRTTFLSVKEIMNLVGLPSSHYVREFRREYGLSPTE"
BASE COUNT          317 a          316 c          330 g          305 t
ORIGIN      
        1 cgcagcgagt ggaaaataca gcttgggcac ggaacaagct gtggctttga cggatgaaaa
       61 cagccccttc ttcgtcggag gcggtttctt cgtcatcaaa gcgatgtcgc aagcggtgga
      121 acgcatcgaa ggtcactttc gagatggagg cggtatgctt tggggtgaac atcatcccga
      181 cctattcatt ggaacggcac gtttcttccg acccggttat gttgcacatt tgactgcgtc
      241 ttggattcct tcgctaactg gcgtagaaga aaaactaaaa gccggaggta aggtggctga
      301 cgtcggttgt ggacttggca cttccacaat catcatggcg caagcttatc caaactcgga
      361 attctggggc ttcgacaatc acgatggctc aatcacactg gccaaaaagg ctgcagagga
      421 agctggtgtt gaggatcgtg ttcacttcga agtcacgaca gctcaatcaa tccccgataa
      481 tcaatacgac ctcgtcgcct tttttgattg cctgcacgac atgggcgatc cggttggcgc
      541 ttgtaaacga gctgtagagg tactggggcc aaacggcgtt gcacttattg ttgagccaat
      601 ggccggaaac actgttgaag aaaacttcaa tccgattggc cggacgttcg caggtgcctc
      661 gacgttgtgc tgtacttcaa attcgttagc gcaggacgga ccagcgctgg gcgcagttgc
      721 gacagaagaa gcgatccgcg aaaaggtgtt ggcaggtggc ttcacgcaat ttcgcagagc
      781 gactgaaact ccgttcaata ggatctttga agcccgaaag taagatcaaa tcgaatgaga
      841 ttgggcgagc ctgggctcgc ccatttctca ttttattttt gtagacaaac gaaagtccgg
      901 cgagtaatct cagccccgcc ccggcacaga acacgtcaca cattaattaa ctcttcgcct
      961 ccggtacctc actatggatc gaagaataga actcgtcatt tctaaaatcg acagcgaccc
     1021 aggttcgtgc agtctccctg cgttgtcggc gcttgtcctg ttgtcacctt cgcgtctccg
     1081 ccaccttttc aaacaagaaa ctggaacaac gccaagtcat tatttgaaaa cggctcggct
     1141 ggttaaggca gaattactgc tgcgaacaac atttttatca gtaaaggaaa tcatgaactt
     1201 ggtaggactg ccttcaagtc actatgttcg tgagttcagg cgcgaatacg ggctctcgcc
     1261 aaccgagt
//
LOCUS       DATCGC010000592         1468 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_207804, whole genome shotgun sequence.
ACCESSION   DATCGC010000592 DATCGC010000000
VERSION     DATCGC010000592.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1468)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1468)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1468
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207804"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1270
                     /locus_tag="VIJ87_05605"
     CDS             <1..1270
                     /locus_tag="VIJ87_05605"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HEY5443938.1"
                     /translation="LNYVMDIKRPPKSKLKKKIRTVILAVVGVAAIGGITYALAKIKP
                     AAPTLDRSTVVIETVQRGPFVRDVHGVGTLVPQVTRIVPAPADGRVETILVQAGVEVS
                     PSTVIVELSNPQMEQQAADATFQVKAAEADEENLKVRLESDSMTQKSAIASINAEYSQ
                     AKLQLDADEVLAKQGLVADLVLKISRVQVQNLANRLKVEQERLAVGSKATKAQLNAQS
                     SRVQQLRALAKLKQDQVDALKVRAGTGGVLQEVTVKEGQQVTPGFNIARVADPASLKA
                     ELRVAETQVKDVKVGQMVTVDTRNGIIQGQVARIDPSAREGTFTIDASLNAPLPPSAR
                     PDVGVDGLIILERLDNVLHVGRPSFGQGQSTIGIFVLTPDGTEAERRTVTLGRYSVST
                     VEIVSGLKEGDKVIVSDTSQYDGYTRIRVR"
BASE COUNT          363 a          372 c          406 g          327 t
ORIGIN      
        1 tctgaattac gttatggaca taaagcgccc tccaaagtcg aaacttaaga agaagattcg
       61 cactgtgatc ctggcagttg tcggggttgc ggccatcggc ggtattacct acgcgctggc
      121 gaaaatcaag cctgctgctc cgacgctgga tcgctcgacg gtagttattg aaaccgtgca
      181 gcgtggccct ttcgtccgag acgttcacgg cgtcggcaca ctcgtgcccc aggttacgcg
      241 cattgttccg gcgccggctg atggtcgcgt cgaaaccatt cttgtacagg cgggcgtcga
      301 agtaagcccg agcacagtca tcgtcgagct atcgaatccg cagatggaac agcaagcggc
      361 agatgccacg tttcaagtaa aggcggctga agcagacgaa gagaatctta aagtgcgctt
      421 agaaagcgac agcatgacgc agaaatccgc aatcgcgagc atcaacgcgg agtacagcca
      481 ggctaagttg cagttggacg ccgatgaagt tttagccaag cagggactgg ttgccgatct
      541 cgtcctgaag atctctcggg tccaggttca aaatctcgct aatcgcttga aggtggagca
      601 ggagcgcctg gcagttggtt caaaggcaac caaggcgcag cttaacgcgc aaagttctag
      661 agtgcagcag ctccgtgctc tcgcaaagtt gaagcaggac caggttgatg ctttgaaagt
      721 tcgcgccggg actggtggcg ttcttcaaga agtgacagtg aaggaaggac agcaagttac
      781 acctggcttc aatattgctc gtgtagccga tcctgcgtcg ctaaaagccg aactcagagt
      841 tgctgagacg caagtcaaag acgtgaaggt gggccagatg gttaccgtcg acacgcgcaa
      901 cggaatcatt caaggccaag ttgccagaat tgatccgtca gccagggaag gcacgttcac
      961 catcgacgct tcgctaaatg caccattgcc gccaagcgca cgcccagacg tgggtgttga
     1021 cggtctaatt attttggaac gtctggacaa tgttctccat gtcggccggc cctcatttgg
     1081 ccagggacag tcgactattg gcatcttcgt cttaacgccg gacggaaccg aagccgaacg
     1141 ccgtacagta acgctcggcc gttattccgt cagtaccgtt gaaatcgtca gcggtctaaa
     1201 agaaggcgac aaagttatcg tttccgacac ttcgcaatac gacggctata ccagaattcg
     1261 agtgcgataa gtttacctgt tgcggtgttt tctaattaga tcagcggttt ttggactttg
     1321 gtcttaggcg tttgccttcg acttgctcga cgttcaaaga cctaagacca gagtccaaaa
     1381 ccaaatctta aggagcacat tgatgagttc atcgggcccc cttattcatc tctctgacgt
     1441 gaagaaggtg ttctacactg aagatgtg
//
LOCUS       DATCGC010000593         1180 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_475116, whole genome shotgun sequence.
ACCESSION   DATCGC010000593 DATCGC010000000
VERSION     DATCGC010000593.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1180)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1180
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_475116"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(152..919)
                     /locus_tag="VIJ87_05610"
     CDS             complement(152..919)
                     /locus_tag="VIJ87_05610"
                     /inference="COORDINATES: protein motif:HMM:NF005559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY5443939.1"
                     /translation="MSNRLKGKVAIVTGGSVGIGQATAQLFAEEGAKVVISNPSVPAG
                     EECAAQLREQGFEAIFVRTDISSEDDCRNCCDEAVKAFGRLDVLVNNGAVFILKGLEA
                     TVADWQRMLSVNIMGTALMSKYASEHMKKVGGGAIVNLGSISSFVAQPSFITYSSTKG
                     AILQMTRNMAMDLAPFNIRVNCVCPGTILTRASEEHMARVGMTKEEFIAAEAPKHLLN
                     RVGEPRECAYPILFLACDESSFITGTHLMVDGGYTAQ"
     gene            complement(1014..1175)
                     /locus_tag="VIJ87_05615"
     CDS             complement(1014..1175)
                     /locus_tag="VIJ87_05615"
                     /EC_number="5.1.3.32"
                     /inference="COORDINATES: protein motif:HMM:NF017174.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016857 - racemase and epimerase activity,
                     acting on carbohydrates and derivatives [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose mutarotase"
                     /protein_id="HEY5443940.1"
                     /translation="MFAYVEIESEELWKRIATTDACRRWWAHMKDLMLTNDDDSPVST
                     ELVEVFHLD"
BASE COUNT          292 a          357 c          252 g          279 t
ORIGIN      
        1 ataatcccag actcctcata attactccat tgcgaagaac gacccacccg ctaccgcgtt
       61 gcgatagtga cctcaacaca ctcaccgcaa aaacaaagca ggcgccgcaa acgatcgcct
      121 gctcctgctt cctgccttct gcctactgtc cttactgtgc cgtatacccg ccatcaacca
      181 tcaaatgcgt gcctgtaata aacgacgact catcacaggc aagaaacaga attggatatg
      241 cacactcgcg tggttcacca acgcgattca ataagtgctt gggcgcctct gcggcaatga
      301 attcttcctt cgtcattcct acccgtgcca tgtgctcttc ggaagctcgc gtcagaatcg
      361 tcccagggca aacgcagtta acgcgaatat taaaaggcgc gaggtccatc gccatgtttc
      421 gcgtcatctg gaggatcgcc cccttggttg agctgtaggt aatgaatgaa ggctgcgcaa
      481 cgaaactcga tatcgaacca agattgacga tcgcgccgcc acctactttc ttcatgtgct
      541 ccgacgcgta cttgctcatg agcgcagtgc ccatgatgtt tacgctcaac attcgctgcc
      601 agtcggcaac ggtcgcttct agtcctttaa gaataaagac agcgccgttg ttaacgagca
      661 catccagacg accgaatgct ttgacggctt catcgcagca attcctacaa tcgtcttcac
      721 tggagatgtc agtacgaaca aagatggctt caaaaccctg ttcacggagt tgcgctgcac
      781 attcttctcc ggccggtacg cttggatttg aaataacaac cttcgcgccc tcttccgcaa
      841 acagctgcgc agtcgcctga ccaattccaa ccgagccacc ggtaacaatt gccactttgc
      901 cttttagacg attcgacatt ctgtttgtgg cacagacttc agtctgtgtt ctcgattcaa
      961 tatacaccca aaggcctgcg aggttgacgt acacagactg aagtctgtgc cactcaatcc
     1021 agatgaaaca cctcaaccaa ctcggtcgac actggactat cgtcatcatt cgtgagcatc
     1081 aggtctttca tgtgtgccca ccagcgacga cacgcgtcag ttgttgcgat gcgcttccac
     1141 aactcctctg actcgatctc aacgtaagca aacaggctct
//
LOCUS       DATCGC010000594         1263 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_441343, whole genome shotgun sequence.
ACCESSION   DATCGC010000594 DATCGC010000000
VERSION     DATCGC010000594.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1263)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1263
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_441343"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..298)
                     /locus_tag="VIJ87_05620"
     CDS             complement(<1..298)
                     /locus_tag="VIJ87_05620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443941.1"
                     /translation="MRIAKTFPLLIVLVVVLAQLVKPVGASPGNAKPKTNGKMLYHGG
                     PVLWTPPNIYFVFYGCWTCNLPGSNTDTMMILEDFASHLGNSPYARINTTYSDAS"
     gene            599..>1263
                     /locus_tag="VIJ87_05625"
     CDS             599..>1263
                     /locus_tag="VIJ87_05625"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY5443942.1"
                     /translation="MSSRSLATISAFLLCLSVSSPAQTVTSDWPQWRGPERTGISQEK
                     GLLKQWPKEGPKLLWQVNDIGDGFSTPSVVGSRIYLMSNRGMENEFVQALSTQDGKVI
                     WTTRVGNVGNPNQNPSYPKARSTPTVDGNLLYALGSDGDLVCLETLGGKVRWQKSLRK
                     EFEGQPHDWAYAESPLVDGDVLVVTPGGAKATIVALNKKTGALIWKSAVPGGDPAGYA
                     SAIV"
BASE COUNT          316 a          322 c          350 g          275 t
ORIGIN      
        1 cactagcatc cgagtacgtc gtgttgatcc tggcatatgg cgagttgcca agatgagacg
       61 cgaagtcctc taggatcatc atagtatctg tgttgctgcc cggaaggttg caagtccagc
      121 agccgtagaa gacaaagtag atattcggtg gggtccacaa gacgggacca ccgtggtaga
      181 gcattttgcc gttggttttg ggcttcgcat tcccagggct tgctccgaca ggcttgacca
      241 actgcgctaa gacaacgacg agcacgatta acaacggaaa ggttttggct attctcattt
      301 tctatcctcc gctcaaaatc catttcagaa agcagcacac acttgcattg cattggacag
      361 tcgccgaggg cctctaatcg atgacgcgtg tggcttccga ggaagagtgg gctaaccgaa
      421 gaaaacatca cacctgtaga aaagagagcg aagactgcag tatggcggaa ctctcccagc
      481 ttcccttgcg tttccgatag agaaacaaat ttcaaagtta gacaccaaca aaaccgaact
      541 cctttccaaa gctgcgctgc ccgatgagcg cggtagagca attcgaagga caaagacaat
      601 gtcttcacgt tcactagcta ccatctcagc atttctgttg tgcttatctg ttagcagtcc
      661 tgcgcaaacc gtcacttcag attggcctca atggcgtgga ccggaacgaa ccgggatctc
      721 gcaggagaaa ggcttgctca agcagtggcc gaaggaagga ccgaaattgc tctggcaggt
      781 aaacgacatc ggcgacggct tttcaacgcc gtcagtagtc gggtcgcgta tctacctgat
      841 gagcaaccgg ggcatggaga atgaatttgt tcaggctctt tcgactcaag atggaaaagt
      901 catttggaca acgcgcgttg ggaacgttgg taacccgaat cagaatccgt catacccgaa
      961 ggctcgctcg accccgaccg ttgacggaaa ccttctctat gcactgggtt cagatggcga
     1021 ccttgtatgc cttgagaccc ttggcggcaa ggttcgatgg cagaagagcc tacgcaagga
     1081 gttcgaaggc caaccccacg attgggctta tgcggagtct ccgttggttg atggcgatgt
     1141 tctcgtcgtc acgcccggag gcgcgaaggc gacgatcgta gcgctaaaca agaagacggg
     1201 agcgctcata tggaaatcag ccgttccggg tggcgacccg gcgggctatg cgtcagcgat
     1261 tgt
//
LOCUS       DATCGC010000595         1675 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_108060, whole genome shotgun sequence.
ACCESSION   DATCGC010000595 DATCGC010000000
VERSION     DATCGC010000595.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1675)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1675
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108060"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..861)
                     /locus_tag="VIJ87_05630"
     CDS             complement(<1..861)
                     /locus_tag="VIJ87_05630"
                     /inference="COORDINATES: protein motif:HMM:NF014805.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443943.1"
                     /translation="MPKRTDIHKILIIGSGPIVIGQACEFDYSGTQACKALRQEGYQI
                     VLVNSNPATIMTDPETADVTYIEPLTVASVTEIIRRERPDALLPTVGGQTALNLAIAL
                     SDAGVLDEFGVEMIGANREAIKVAENRLLFKQAMDEEGLEMPRGGFAKSWDEAKELVA
                     QTGYPAIIRPSFTLGGTGGGIAYNPEEFEEIVRGGLAASPIDEVLIEESILGWKEFEL
                     EVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDREYQSMRDMAIRIIRKVG
                     VETGGSNIQFA"
     gene            complement(1018..>1675)
                     /locus_tag="VIJ87_05635"
     CDS             complement(1018..>1675)
                     /locus_tag="VIJ87_05635"
                     /inference="COORDINATES: protein motif:HMM:NF013828.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY5443944.1"
                     /translation="IPERYLDCSFENFKTEGSNSIDSALLYAKSLAIDYPAVDRGLLF
                     MGGVGVGKTHLAVSILKSLAGRKFSCLFCEFGSLLKRIQDSYNPISKSSEMNVLAPIY
                     EADVLALDELGAAIPTDWVRDTMYQIINKRYNDKKLTIFTTNFLDEPRPGNNASEPER
                     RTFSTKGSHDRIREMTSLEDRIGSRLRSRLYEMCTKVVMEGEDYRTHMGRRRFDVSRS
                     "
BASE COUNT          405 a          445 c          400 g          425 t
ORIGIN      
        1 agcgaactga atatttgaac cgccggtctc tacacccact ttgcgaataa ttcggatcgc
       61 catgtcgcgc atcgactgat actcgcgatc ggttagggtc tgcgccggag ccacggtaat
      121 cgaatcacct gtgtggacac ccatcgggtc gaagttctca atcgaacaga tgatgaccac
      181 gttgtctgcg agatcacgca tgacctcgag ttcaaactct ttccaaccga gaatcgattc
      241 ctcgatcagc acttcatcga ttggagatgc cgccaagcca ccgcggacga tctcttcaaa
      301 ctcttcgggg ttataagcaa tgccgccacc cgttccgcca agagtgaacg acggacgaat
      361 gattgcaggg tatccggtct gtgcgaccag ctctttcgct tcatcccacg atttggcgaa
      421 cccaccgcgt ggcatttcca ggccctcttc gtccattgcc tgtttgaata gaagtctgtt
      481 ctcagcaact ttgatcgctt cgcgattcgc gccaatcatt tccacgccaa actcgtccaa
      541 cacaccggcg tctgaaagtg caattgccag gttcagtgca gtctgtccac cgacggttgg
      601 cagcagtgcg tctgggcgct cacgacggat tatttcagtg accgaagcta ctgttagcgg
      661 ctcgatgtag gtaacgtcag ctgtttccgg atcagtcatg attgttgccg gattcgagtt
      721 gacgagaacg atttgatatc cctcctggcg cagtgctttg caagcctggg tgccggagta
      781 atcaaactcg caggcttgtc caattacaat aggtccggag ccgataatta gaattttatg
      841 tatgtcggtg cgtttaggca tcagcagtta agctcgattt gtgatctgga aagtcgaagc
      901 attttacata actcagcccc gagaaacgac cggacaaggt gtcgctggta aagatgagtt
      961 gttcggaaat ctcaacaggc gagcaaaaga tattattggc ttactagatt tgttccctta
     1021 actccttgaa acgtcgaaac gacgacgacc catgtgtgtg cggtagtctt caccctccat
     1081 cacaactttt gtgcacattt cataaagacg actgcggaga cgactgccaa tccgatcctc
     1141 gagtgacgtc atctcgcgaa ttcggtcatg acttccttta gtgctgaaag tgcggcgctc
     1201 tggttcagac gcattattgc ctgggcgcgg ttcatcgaga aaattagtcg tgaatatggt
     1261 gagcttcttg tcgttgtagc gtttattaat gatctgatac atcgtgtcgc gcacccagtc
     1321 ggttggtatt gcagctccta gttcatctaa cgccaaaacg tcagcctcgt agattggtgc
     1381 aagcacattc atttcggacg acttcgagat cggattgtaa gaatcctgga tccgcttcaa
     1441 cagcgatcca aactcgcaaa acagacaact aaattttcga ccagcaaggc tcttgagaat
     1501 cgacacggcc agatgcgttt tcccgactcc cacaccaccc ataaacaata agcccctgtc
     1561 cacggccgga taatcaatcg ccagcgactt cgcgtacaag agcgctgagt ctattgagtt
     1621 gcttccttcc gtcttgaaat tctcaaacga gcaatcaaga tacctttcgg gaatg
//
LOCUS       DATCGC010000596         2454 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_475224, whole genome shotgun sequence.
ACCESSION   DATCGC010000596 DATCGC010000000
VERSION     DATCGC010000596.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2454)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2454)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2454
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_475224"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(172..2031)
                     /gene="yidC"
                     /locus_tag="VIJ87_05640"
     CDS             complement(172..2031)
                     /gene="yidC"
                     /locus_tag="VIJ87_05640"
                     /inference="COORDINATES: protein motif:HMM:TIGR03593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0051205 - protein insertion into membrane
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEY5443945.1"
                     /translation="MQQKRLILALVLSSAILFLWSYFYPAKPPQVNQASATPSPTATQ
                     GQPSTDTSLPVGSSTPATPPVATNPNAAPQRTITIRTPLYVAKFESRGAEPVSWVLLR
                     NSHSQAEIFSVAGKKSDRRALELVSPEGLTRQPRLVPLQVQTGDAALDNALAATTYRV
                     EGIDQNAGTDVEVNLLAGEKKQLTFALDGANGLQVRKTITFDADHYTTDLSLTVKRGD
                     QVVPQVKVTIGPSISDQGVTHHTFYSVAPEAISFAGGKVERHPAANINSNKNSPDKLV
                     LPGPVDWAGVGDTYFAMVAIPLKQTDGLEYRTTAYEHAIQGSKPEKRYLITGLVPVPS
                     DGSHTLIYTGPKDHYLLTSASADVSKVVQRPIDLEGLIDYGFLGWISRPLAVPILKAI
                     TFLYELTSSYGVAIILFTIVIYSLFFPLKWRSSKSMKKAQKLAPRMKELQEKIKGVKQ
                     NDPRLKELQMEQLRLMKEGNPLGGCLPLLIQMPFLFALYRAITISLDFRQATFLWIPD
                     LSAPEPYLIHVLPILMTGTMVVLQLVTPAPSADPLQRKMMAIGMPMFMLYVLWSAPSG
                     LVLYWLVGNIVGFTQQFLINRWTATDEDESPPSTGKSNASGKKNPSSPLAASA"
     gene            complement(2048..2257)
                     /gene="yidD"
                     /locus_tag="VIJ87_05645"
     CDS             complement(2048..2257)
                     /gene="yidD"
                     /locus_tag="VIJ87_05645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002474682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEY5443946.1"
                     /translation="MKTVLISFLRTYKLAISPLLPPSCRFIPTCSEYAIDAITRYGAL
                     RGTRLAIWRVLRCHPFHPGGYDPVK"
     gene            complement(2269..>2454)
                     /locus_tag="VIJ87_05650"
     CDS             complement(2269..>2454)
                     /locus_tag="VIJ87_05650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443947.1"
                     /translation="EAFRSNDLSLEALSRRYDWVLNAKSTLLSVKLDAPAEEFAGIVD
                     RVSKSELRADSTAQRVE"
BASE COUNT          594 a          620 c          618 g          622 t
ORIGIN      
        1 gagtagttcg ccagtctgag cttgcagtaa ttcagcgtcc tcgccgtcga tgtcgagcac
       61 tggtccggtc aagccggttc gcaccgttac acccaattcg aggccggtac tattgaagac
      121 ggactcgaga aactctcctg cctgctgcgg aacgtcattc atatcgtgac ctcatgcgct
      181 cgctgctagc ggtgaactag ggtttttttt tccgcttgcg tttgatttac ctgtggaagg
      241 cggactctca tcttcatcgg ttgcggtcca acggtttatc aagaactgct gagtgaagcc
      301 aactatgttt ccaaccaacc aatataagac caggccggag ggtgcgctcc aaagaacata
      361 gagcatgaac attggcatcc caatagccat catcttccgc tgaagcggat ccgctgacgg
      421 ggctggagtg actagctgta gtacgaccat tgtgcccgtc attaagatag gcaaaacgtg
      481 aatcaggtat ggctcaggag ccgagagatc cggaatccac aggaacgtcg cctgacgaaa
      541 atccagcgag atcgttatcg ctctatagag agcaaagagg aacggcattt ggattagaag
      601 cggtaagcat ccaccaagtg ggttgccctc cttcataagc cgcagctgtt ccatctggag
      661 ttcttttaag cgcggatcat tttgcttaac tcccttgatc ttctcttgca gctctttcat
      721 tcgcggcgca agcttctggg ccttcttcat cgatttcgac gaacgccatt tcaacggaaa
      781 gaagagcgag tagatcacaa tcgtgaagag aataattgcc acaccataac tactggtcaa
      841 ctcatacagg aaagtaatcg ccttcagaat gggaacggcc agcggtcttg aaatccagcc
      901 caggaaaccg taatcaatca ggccttccag atcgattggt cgctggacca ctttcgagac
      961 gtctgcgcta gcggaggtaa gaagatagtg atcctttggg ccggtataaa ttagtgtgtg
     1021 tgacccatca gagggaacgg gaacaaggcc ggtaataagg tatcgtttct ccggtttact
     1081 tccttgtatt gcgtgttcgt atgcagtagt tcggtactcc aagccatcgg tttgttttaa
     1141 cggtatcgcc accatggcga agtacgtatc cccgacccct gcccaatcaa ccggaccagg
     1201 gagtacaagt ttatccgggc tattcttatt actgttgatg ttcgccgcag gatgtctttc
     1261 taccttgccg ccggcgaacg agatggcctc aggagcaacg gagtaaaaag tgtgatgcgt
     1321 aactccttga tcgcttatgc ttggtccaat ggtaactttg acttgaggta caacttgatc
     1381 gccgcgcttt acagttagac tcaagtccgt cgtatagtga tccgcatcga aggtgatggt
     1441 ctttcgcacc tgcaatccat tcgcaccgtc taaggcaaac gtcagctgtt tcttttcacc
     1501 agcaaggaga ttaacttcga catcagtgcc tgcgttctga tcgatccctt ccactcggta
     1561 cgtcgttgcc gctagcgcat tgtctaatgc agcgtcccct gtttgtactt gcaaaggcac
     1621 cagtcttggc tgtctggtca acccttccgg tgaaacaagt tcgagtgcgc gtcgatctga
     1681 ctttttaccg gcaacggaaa aaatctcggc ctgactatgg ctgtttctta aaagaaccca
     1741 actcacaggt tcagcaccac gtgattcaaa cttcgcaacg tataaagggg ttcgaatcgt
     1801 tatagttcgt tgtggcgcgg cgttcggatt ggtagcgaca ggcggtgttg caggtgtcga
     1861 tgaaccaacc ggaagagaag tatctgtact cggttggcct tgtgtcgctg ttggacttgg
     1921 tgtcgcgctg gcctgattaa cctgcggggg tttagctgga tagaagtagc tccataaaaa
     1981 caggatggca gatgaaagca ccagcgccaa tatcaatcgt ttttgttgca tgacttatta
     2041 ggccgactta cttaacagga tcgtacccac cggggtgaaa tggatgacaa cgaagcaccc
     2101 tccaaatggc caggcgcgtt ccgcgcaacg ccccataacg ggtgattgcg tcgattgcat
     2161 actccgaaca tgtaggaata aatctgcaag agggaggtaa aagcggtgaa atcgccagtt
     2221 tataggttct gagaaatgat attaggactg tcttcacaca actatcactt actcaacgcg
     2281 ttgggccgtg gaatcggccc tcagttccga cttactcact ctgtcgacta ttcccgcgaa
     2341 ctcttcagct ggtgcatcga gctttacgct caacaatgtc gacttcgcat tcaaaaccca
     2401 gtcgtatctt ctcgacagcg cttctaagga aagatcgttg gatcgaaacg cctc
//
LOCUS       DATCGC010000597         1943 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_141426, whole genome shotgun sequence.
ACCESSION   DATCGC010000597 DATCGC010000000
VERSION     DATCGC010000597.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1943)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1943)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1943
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_141426"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..994
                     /locus_tag="VIJ87_05655"
     CDS             <1..994
                     /locus_tag="VIJ87_05655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443948.1"
                     /translation="NRSATMDAGQKLTISHAPDLFRVPEILGAVVIIMLVIAHLRRRI
                     EWQAPECVFTASLALMSFAVFNQQVITGRSLQPFHYESFIANYLALVAVIVASVIIWR
                     GREGATKQVRYGVVRWIVFVSFWWAAIEIMAPTKVIKKDNLFIDRAAAVCQRLREKPM
                     VNPPKVDSSSDSAPLVLASDNKVAVLLPTFAPQPVLWAPHFDFLDLRPGESRQRFYQY
                     LYYTGVDENRLTKDLHEPMSTVAAAAFGHERVIPDLAVKPKPITDEEIATQVSEYKSF
                     YSSFSRDQAVQHILSYVIVPVTDGPDLANLDRWYQRDEGEQVGNYILYRVELRP"
     gene            1002..>1943
                     /locus_tag="VIJ87_05660"
     CDS             1002..>1943
                     /locus_tag="VIJ87_05660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443949.1"
                     /translation="MQVELNHMNVEVLPSKNSLLTHLELRRVFVWAFLLSLFSVAVLQ
                     CSNIDWDFWWHLKTGQYIIESRSIPHVDPFSFTRAGQQWIAHEWLSEVIMYSVFHAGG
                     WIGLFLLFGTTITGALGICYKRCEGKPFIAALAVFLVAAASSPLFGFRPQMFTLLFAS
                     LFIALLDGYTYHGRRRVIWLLPLLMLFWVNLHAGFALGPALILLFVAMAFLDREWKRI
                     GPLLLIFAICVAVIPLNPNGFRMFSYPFETLSASSMQNFIQEWLSPDFHQLRFLPLAA
                     LIIATFSAMALSPTRPRPGELFALSALTFAALRSGRHI"
BASE COUNT          418 a          509 c          475 g          541 t
ORIGIN      
        1 gaatcgctcg gcgaccatgg acgcgggaca gaaattgacg atctctcatg cacctgatct
       61 ctttcgcgtt ccggaaatcc tcggtgcggt cgtcatcatt atgcttgtca tagcccactt
      121 gcgaagacgt atagagtggc aggcgcccga atgtgtgttt acagcgtctc ttgcactcat
      181 gtctttcgca gtcttcaacc agcaggttat tactggcaga tcgttgcagc cttttcacta
      241 tgagtcgttc atcgccaatt accttgcgct cgtagctgtg atagtcgcga gcgtgattat
      301 ctggcgcgga cgcgaaggag caaccaagca agttcgctac ggcgttgtca ggtggattgt
      361 ctttgtctcg ttctggtggg cggcaataga gatcatggcc ccgacaaaag taataaagaa
      421 ggacaacctc tttatcgatc gcgcagccgc tgtgtgtcag cgattgcggg aaaagccaat
      481 ggtcaaccca ccaaaggtcg attcttcatc ggattcagcg cctctggtgt tggcttccga
      541 caacaaggtc gccgtgctct taccgacgtt tgctcctcag cccgtacttt gggctccgca
      601 tttcgatttc ttagatctgc gaccaggaga gagtcgacaa cgcttctacc agtatctcta
      661 ttacacgggt gtcgacgaaa atagactgac taaagacttg cacgagccaa tgagtacagt
      721 tgccgcggcg gcgtttggac atgagcgagt gatccctgat ttagcagtca agcccaaacc
      781 aatcaccgat gaagaaatag ccactcaggt ttcggaatac aagagcttct attcatcatt
      841 ctctcgcgac caagcggttc aacatattct ttcgtacgtc attgttcccg taactgacgg
      901 accggattta gcaaatctgg atcgctggta tcaacgggat gagggtgagc aagtgggcaa
      961 ctacatcctc tatcgtgtgg aattaagacc atagaaactc gatgcaagta gaactcaacc
     1021 acatgaacgt cgaagttttg cccagtaaga attctctgct tacgcattta gagctgcgac
     1081 gcgtgttcgt ttgggctttt cttttgtcac ttttttcagt cgcagttcta cagtgcagca
     1141 atattgattg ggacttctgg tggcatctga agaccgggca atacattatt gagtcgagaa
     1201 gtattcctca cgttgaccca ttttcattta ctcgtgctgg tcaacaatgg attgctcacg
     1261 aatggctgtc agaagtcatt atgtactcag tcttccacgc aggcggatgg attggtctat
     1321 ttcttctctt tggtaccacc attactgggg ccttgggaat ttgctataaa cgctgcgaag
     1381 gcaagccatt cattgcagcg ctggcggtct tcctcgtagc ggcagcctca tcacctctat
     1441 ttggttttcg accgcagatg ttcacactcc tcttcgccag cttgtttatc gcgcttttgg
     1501 atggttacac ctaccacggt cggcggcgtg tcatatggct attgccactg ttgatgctct
     1561 tctgggtaaa cctccacgcg ggctttgcgt tgggacctgc tttgatcctg ctttttgtcg
     1621 caatggcgtt cttggacagg gaatggaaga gaattggacc actgctacta atcttcgcaa
     1681 tctgtgtcgc agtaattcca cttaacccaa atgggtttcg catgttcagc tatcccttcg
     1741 agactctttc agcgtcgtcc atgcagaact tcattcagga atggctttcg cccgacttcc
     1801 accaactgcg gttcctgccg ctcgctgcgc tcataattgc aacgttttcg gcgatggctc
     1861 tgtctccaac ccggccgcgt cctggagaac tgtttgcact ctccgctcta acttttgcgg
     1921 ccttgcgctc cggccgccac ata
//
LOCUS       DATCGC010000598         1806 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_374170, whole genome shotgun sequence.
ACCESSION   DATCGC010000598 DATCGC010000000
VERSION     DATCGC010000598.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1806)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1806)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1806
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_374170"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1088)
                     /locus_tag="VIJ87_05665"
     CDS             complement(<1..1088)
                     /locus_tag="VIJ87_05665"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013227.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HEY5443950.1"
                     /translation="MSAPVKQGMRVAGFDLKYSDEEVRSIMAGFEKILRTGFISMGRN
                     VEEFEREWAKYCGTKYALGTGNGTCSIELILRSIRVQGGTVVVPSHTFIASAAASIHA
                     GARVIFVDCQRETFQMNPKDLRRKIRPDTKAVLLVHMSGIISPHLEEIRDICQEHDVA
                     LIEDAAHAHGATIDGRKAGSLGRAASFSFFSTKVLTTGEGGMITTDDDNLYETARALR
                     DHGRFGLEPNVHDEIGNNWRPGEFNAVLGLEQMRRVEKLLQKRRHIARSYDKKLRERK
                     IPGIKLIDIPPNIQSAYYKYVLYFEPPIEREKLKQKMKQDYGVSLPGELYNRNCHSQP
                     VFAKHPELIIPQPADSFVETDYVVSNHF"
     gene            complement(1085..>1806)
                     /locus_tag="VIJ87_05670"
     CDS             complement(1085..>1806)
                     /locus_tag="VIJ87_05670"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEY5443951.1"
                     /translation="GYNVKHHGEMFFSNALMNLHMMEAARLASVDRFLCVSTVGVYPK
                     DCEVPTPEEDGFKGEPEASGFGYGWSKRLAEVQARCYKDEYGMKIAIVRPWNVYGPRV
                     DFSPETAPVVPSQIRKVLEAKDMITVWGSGEQTRSFTYVSDEVDGMMLAVEKYPEADA
                     LNIGTSEEIKIKDLVHLIVRLSGKKIQIEFDKTKPSGAERRCPNISKAERLIGYQPKV
                     RMDEGLQKTMNWYLQSTGMSQ"
BASE COUNT          385 a          517 c          436 g          468 t
ORIGIN      
        1 cagaagtgat ttgaaactac gtagtctgtc tcgacaaagc tatccgccgg ttgcgggata
       61 atgagttccg ggtgcttagc aaacactggt tgcgaatgac aattgcgatt atatagctct
      121 ccaggcagag atacaccgta gtcctgtttc atcttctgct ttagcttctc tctttcgatc
      181 ggtggctcga aatacaagac atacttgtaa taggccgatt gaatgttcgg cggtatgtca
      241 atcaacttga tcccgggaat cttcctctct cttagcttct tatcatagct gcgggcgatg
      301 tggcggcgct tctgcaggag tttctctact cgccgcatct gctccagacc aaggacggcg
      361 ttgaattcgc ctggtctcca gttgttaccg atttcgtcgt gcacgtttgg ctcgaggcca
      421 aaccgcccgt ggtcacggag cgctcgagca gtctcgtaga ggttgtcgtc gtctgtggta
      481 atcattccgc cctcaccggt ggtgagaact ttggtagaga agaatgaaaa cgaagccgcc
      541 cgtccaagcg aacccgcttt cctaccatcg atggtcgcac catgcgcgtg cgcagcgtct
      601 tcgatcaaag caacgtcatg ctcctggcag atatcgcgga tttcttcgag atggggagaa
      661 atgattccgc tcatatggac cagcaacacg gccttggtgt cgggccggat tttgcggcgc
      721 aagtctttgg gattcatttg aaacgtctcc cgctgacagt cgacaaaaat caccctcgct
      781 cccgcatgga ttgaggccgc cgcgctggcg atgaacgtat ggcttggaac cacaaccgtt
      841 ccgccctgaa cacgaatgga tcggagaatc agttcgatgg aacaagtgcc attaccagtc
      901 cctaaggcgt acttcgttcc gcagtacttc gcccattctc gttcgaactc ctctacattg
      961 cgccccatgc tgatgaatcc cgttcgaagg attttttcaa atccggccat gattgaccgg
     1021 acttcttcgt cggaatactt cagatcgaag cctgctactc gcataccttg tttgacaggc
     1081 gcgctcactg agacatcccc gtgctttgaa gataccaatt catcgttttt tgaagtcctt
     1141 cgtccatccg tacctttggt tgatatccaa tcaggcgttc agctttcgaa atgttcgggc
     1201 aacgcctttc tgcgcctgaa ggcttggttt tatcaaactc tatctggatc ttcttgcctg
     1261 acaaccggac aatcaggtga acgagatcct tgatcttaat ctcttcactc gtcccgatat
     1321 ttagagcatc cgcctccggg tacttctcga cggcaagcat catgccatcg acttcgtccg
     1381 aaacataggt gaacgatcga gtctgctctc cgctacccca taccgtaatc atgtctttgg
     1441 cctcgagcac ctttctgatc tgggaaggaa ctaccggcgc tgtttccgga ctaaagtcca
     1501 cgcgcggacc ataaacgttc cagggtcgca cgattgctat cttcatccca tattcgtcct
     1561 tgtagcagcg cgcctgcacc tcggcgagtc gcttcgacca tccgtaccca aacccactgg
     1621 cctccggttc tcctttgaag ccgtcctcct caggggtcgg cacttcgcaa tctttagggt
     1681 aaacgccgac agtacttacg cacaggaagc gatcgacgga cgccaggcgc gcagcttcca
     1741 tcatgtgcaa attcatcagg gcgttcgaga agaacatctc cccgtgatgc ttcacgttgt
     1801 agccga
//
LOCUS       DATCGC010000599         1067 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_108109, whole genome shotgun sequence.
ACCESSION   DATCGC010000599 DATCGC010000000
VERSION     DATCGC010000599.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1067
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108109"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..438
                     /locus_tag="VIJ87_05675"
     CDS             <1..438
                     /locus_tag="VIJ87_05675"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY5443952.1"
                     /translation="PFLEDGSGLGKFVDRSGASFELHSYSKKLWPSTSAIALPIVVLT
                     NESTSSAAEIMASALQTKRRARVMGSVSCGCVLAIRSRHTLPDGGVLDVSEFDYRTSD
                     GVRLEGRGISPQDITTLKREDLYAGRDGTLELAKSYLKRKIKK"
     gene            561..>1067
                     /locus_tag="VIJ87_05680"
     CDS             561..>1067
                     /locus_tag="VIJ87_05680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443953.1"
                     /translation="MLYLSQVLGRPIRDLEGERVATVKDVIVRLGEDDHPPVTGVVAR
                     YRRRDFFILRWRMNDLNQQGVRLNSDLLDLRPFVRREGEVLLARDVLDKQLIDVDGKR
                     VVRVNDVQIIEAAGEWRVTGADVSLQGLWRRLAPSGFVGTKRPVEVLDWADVGYLATD
                     AATVQLKSS"
BASE COUNT          253 a          280 c          284 g          250 t
ORIGIN      
        1 cccttccttg aagacggatc aggactcggg aagtttgttg atcggtcagg agcttcgttc
       61 gaactccaca gctactcgaa aaagctttgg ccatcgacct cagctatcgc cttgccaata
      121 gttgtactaa ccaacgagag cacttcgagt gcagccgaaa taatggcgtc cgcactgcaa
      181 acaaaacgca gggcccgtgt gatgggcagc gtttcttgcg gatgcgttct agcaattcgc
      241 agtcgccata cattgccgga cggtggagtc ctcgacgtta gcgagtttga ttatcgaacc
      301 tctgacggcg ttcgcttaga aggacgcggc attagcccac aggacatcac aacactcaaa
      361 cgcgaagatc tttatgccgg ccgcgatggc actctcgaac tggcaaagag ctatctaaaa
      421 cgcaagatca aaaaatgatc tgaacagcgc gcttttatca accacccgat caagcttttc
      481 gtcgcgaagg catcgccacc tgttctgaaa catcgtgcta tcatgcccag gcgcgagtcc
      541 aaccacaggt gatctagtta atgctctatt tgtcgcaggt attaggtcgg ccaatccgcg
      601 accttgaagg tgaacgtgtg gccaccgtca aggatgtgat cgtgcgttta ggggaggatg
      661 atcacccacc agttaccggc gtcgtcgcac gttatcgtcg acgcgacttc ttcattttgc
      721 gatggcgcat gaatgatctt aatcaacaag gcgttcgcct gaattcagat cttctcgatc
      781 tgcgaccctt tgtccgccga gaaggtgaag tactcctggc ccgcgatgtt ctcgataagc
      841 aactcattga tgttgacggc aaacgcgttg ttcgcgtgaa cgatgttcaa atcatcgaag
      901 ctgcgggtga atggcgagtg actggcgcgg acgtcagcct gcaaggtctt tggagacgac
      961 ttgcaccgtc tggctttgtt ggaacaaaac gaccagtgga agttctcgac tgggcggatg
     1021 tcgggtatct agcaactgac gccgcaactg tccagttgaa gtcgtcg
//
LOCUS       DATCGC010000600         1143 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_441434, whole genome shotgun sequence.
ACCESSION   DATCGC010000600 DATCGC010000000
VERSION     DATCGC010000600.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1143
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_441434"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1143
                     /locus_tag="VIJ87_05685"
     rRNA            <1..>1143
                     /locus_tag="VIJ87_05685"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          308 a          273 c          353 g          209 t
ORIGIN      
        1 cactagaccc gaaaccgcgt gagctaccca tggccaggct gaagcggagg taatactccg
       61 tggagggccg aactcttcaa cgttgaaaag ttgagggatg agctgtgggt agaggggaaa
      121 tgccaaccga acgcggagat agctggttct cctcgaaata gctttagggc tagcgttgcg
      181 cgttccctct ttgaggtaga gcactggatg ggctaggggg cttaccgctt accaaaccca
      241 accaaactcc gaatgcgaag aggcgaagcg tggcagtcag tctccggggg ctaagctcca
      301 gagacaaaag ggaaacagcc cagaccaaca gctaaggtcc ctcaatccag gctaagtggg
      361 aaaggatgtt ggatcgctca gacaaccagg atgttggctt agaagcagcc atcatttaaa
      421 gagtgcgtaa ttgctcactg gtcaagtaat cctgcgccga taatgtccgg gactaaagtc
      481 caccaccgaa gctgcgggtg tgtgattcct tcgggagtca tacgcggtag gggagcgttc
      541 tgttgtagga tgaagcggaa tcgtaaggtt ccgtcgacga accagaagtg attatgccgg
      601 aacgagtagc gagaaaccag gcgagaaacc tggtcaccga aagcctaagg tttcctgagg
      661 aaggttaatc cgctcagggt tagtcgggcc cttagccgag gccgagaggc gtaggcgatg
      721 gaaaacaggc aaacattcct gtaccggtcc gcagacgatc aagacgttaa ggggttacgc
      781 agaagtgaaa gaccagccca cgatcggaag tgtgggtcta agcccgtagg aggatcccgt
      841 aggcaaatcc gcggggtcac tactccgaga ggtgatgggg agagcgaaag ctcacaaact
      901 ggtcctaatc atgctgccga gaaacacctc tacgcgagtc tgcgagtcgt ccgtaccgca
      961 aaccgacaca ggtaggcggg gtgagtatcc taaggtgctc gagtgagtct tgcagaagga
     1021 actcggcaaa atagccccgt aacttcggaa gaaggggtgc ttctagtagg tgaaggtcct
     1081 cgcgactgga gcccaacgaa gccgcagtga atggggtcaa gcgactgttt accaaaaaca
     1141 cat
//
LOCUS       DATCGC010000601         1204 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_12258, whole genome shotgun sequence.
ACCESSION   DATCGC010000601 DATCGC010000000
VERSION     DATCGC010000601.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1204
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12258"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..227)
                     /locus_tag="VIJ87_05690"
     CDS             complement(<1..227)
                     /locus_tag="VIJ87_05690"
                     /inference="COORDINATES: protein motif:HMM:NF013720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443954.1"
                     /translation="MKQLRLHEHHMKLGAIFEEDGGWNVPAHYGDWVAEYQAVRQAVG
                     LSDLSHRGKIRVTGDDRITWLQSLISNDILPL"
     gene            complement(266..700)
                     /locus_tag="VIJ87_05695"
     CDS             complement(266..700)
                     /locus_tag="VIJ87_05695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443955.1"
                     /translation="MTSSSHQTDKIDRTDQKTILVGVTDIFFYTKVRDALMAKGYRIE
                     RARTQQEVAEKASATTPSAFVVNMNDDRFDALQALENLKADARLKTIPILAFANHEEV
                     DTFNRARALGVTKIVSRNEFSSRLRDLVEEVISAQQSAESDS"
     gene            complement(772..>1204)
                     /locus_tag="VIJ87_05700"
     CDS             complement(772..>1204)
                     /locus_tag="VIJ87_05700"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5443956.1"
                     /translation="EQQMKRELEEAVNLYKKSLATHPTAEAHTFLGWTYSWMGRIDEA
                     IEECHRAIAQDPDFGNPYNDIGAYLIEKGELDEAIGWFQKALLARRYESPAFPHLNLG
                     RVYERKGQWTEAIDSYKKALALNPNYTLAKKALGRLISSLN"
BASE COUNT          242 a          321 c          327 g          314 t
ORIGIN      
        1 agggggagaa tgtcgttgct gatgagactc tgcaaccatg tgatccggtc gtcgcctgtg
       61 acgcggatct tgccccggtg cgagaggtcg gagagtccga ctgcttgacg cacggcctga
      121 tattcggcga cccaatctcc atagtgagcg ggcacgttcc atccgccgtc ctcttcgaag
      181 attgccccta gcttcatgtg atgttcgtgg aggcgtaact gcttcatgac tctttcctag
      241 atcgaaagtc ttcagcgatc agacttcagc tgtcggattc agctgactgc tgggcgctga
      301 ttacttcttc taccaggtct ctcagtcgag aagaaaattc attgcgtgag acgatctttg
      361 tcactcccag cgctctagcc cggttgaatg tatcgacttc ttcgtgattt gcgaaggcaa
      421 gaatgggaat agtcttcaat cgcgcgtcgg ctttgaggtt ttcaagagct tgcaaggcat
      481 cgaatctgtc atcattcatg ttcacgacga acgcggatgg ggttgtcgcc gaagcctttt
      541 cggcaacctc ctgttgcgta cgagcccgct cgatccggta gcccttcgcc atcagggcgt
      601 cgcggacttt ggtgtaaaaa aagatatcgg tgacgccgac gagaattgtc ttctgatctg
      661 tccgatctat cttgtctgtc tggtgggaac tcgacgtcat gtatggaccc gccttcgtat
      721 cagaatacat gaaaggtttt ggtgacagaa caagacagcc agatagacga attagtttaa
      781 tgaactgatc agccgtccca acgctttctt tgccaaggta taattgggat tgagcgccag
      841 cgccttctta taggaatcga tggcttcggt ccattggcct ttgcgctcat agacccgacc
      901 gaggttgaga tgggggaagg ccgggctctc atagcgtctc gcgagcagcg ctttctgaaa
      961 ccagccgatc gcttcgtcca gttcaccctt ctcgatcaga taggccccga tgtcattgta
     1021 ggggttgccg aagtccgggt cctgcgcgat ggccctgtga cattcttcaa tcgcctcgtc
     1081 aatccgcccc atccagctat aggtccaccc caagaacgtg tgggcctcgg cagtgggatg
     1141 ggtggccagc gatttcttgt acaggttgac ggcttcttcc agctcacgct tcatctgttg
     1201 ctca
//
LOCUS       DATCGC010000602         1138 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_407532, whole genome shotgun sequence.
ACCESSION   DATCGC010000602 DATCGC010000000
VERSION     DATCGC010000602.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1138)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1138)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1138
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407532"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..544
                     /locus_tag="VIJ87_05705"
     CDS             <1..544
                     /locus_tag="VIJ87_05705"
                     /inference="COORDINATES: protein motif:HMM:NF015148.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035673 - oligopeptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="OPT/YSL family transporter"
                     /protein_id="HEY5443957.1"
                     /translation="PKATLMSYIIKGILNRQLPWGLVLLGVMISIVLEMSGIPLLAFA
                     VGVYLPLSSSSPIFIGGMIRWLVDKYLRKKLKDKKLSEDELVAETDKSPGVLMASGYI
                     AGGALAAIVIAILQGVPKQGLINLNRGIEDWANLRNPMFKGDYSDLLSMIPFLVLMVL
                     LYLVGREVILRNKPEPSSRR"
     gene            632..>1138
                     /locus_tag="VIJ87_05710"
     CDS             632..>1138
                     /locus_tag="VIJ87_05710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443958.1"
                     /translation="MLKRTLIPSLCCFVLFVSAATVFPQAQPLSPTETVRLFYKTMRE
                     KKFKEAFAMSIYKPAVEGLSAKELDDLRPDFEKMAAAIPEQVDLSGETISGDLATVFV
                     KVKETAETAEKSEPIQLVKANGFWIIGDPENQAIVKKAGKSFFFNARIDTHHNDVQDL
                     LTRITLAEV"
BASE COUNT          277 a          254 c          314 g          293 t
ORIGIN      
        1 cccgaaagca accctgatgt cttacatcat caagggcatt ctgaatcgtc agttgccgtg
       61 gggattagtg ttgctcggcg tgatgatttc aatcgtgctt gagatgagcg gcattccgtt
      121 actggctttt gcggtgggtg tttaccttcc gctctcgtcg tcgagtccga tatttattgg
      181 cggcatgatt cgttggctcg tcgacaagta cctgcgaaag aagttgaaag acaagaagct
      241 ttctgaagac gaactggtcg cagaaactga caagagtccc ggcgtcttga tggcgtcagg
      301 gtatattgcc ggcggtgcgc tcgcagcgat tgtcattgcc attctgcagg gcgttccgaa
      361 gcaaggcttg atcaacctta accggggtat agaggattgg gccaacttaa ggaatccgat
      421 gtttaagggc gattactctg atttgctgtc aatgattccg ttcctggttt tgatggtgct
      481 gttgtatctt gtcggacgtg aggtcattct caggaacaaa cctgaaccat catcaaggcg
      541 ttgaagccga cgtggttgtc tgttgacatc ataaaggcgc gctgcttagt ttgggcgcgc
      601 ctctttactg attcagaggt ctattatttc gatgcttaag cgaacactaa ttcccagtct
      661 ttgttgtttc gtgctcttcg ttagcgctgc cactgtgttc ccgcaagccc aaccgctttc
      721 accaacggaa acggtacggc tgttttacaa aacgatgcgg gaaaagaaat tcaaagaagc
      781 attcgcgatg tcgatttata agccagccgt tgaaggcctg agtgcaaagg aactcgatga
      841 cctgcgccca gactttgaaa agatggcggc cgcaattccc gaacaagtgg atcttagtgg
      901 tgaaacgatc agtggcgacc tggcgaccgt gtttgtgaag gtgaaggaga cagcagaaac
      961 tgcggagaag tcagagccga tccagttagt gaaggcaaat ggcttttgga ttatagggga
     1021 cccggagaac caggcaatag ttaaaaaggc gggaaaaagt ttcttcttca atgcgcggat
     1081 agatacccac cacaacgacg tgcaagattt gcttacgcga atcactctcg cggaagtc
//
LOCUS       DATCGC010000603         1479 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_374253, whole genome shotgun sequence.
ACCESSION   DATCGC010000603 DATCGC010000000
VERSION     DATCGC010000603.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1479)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1479)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1479
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_374253"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..771)
                     /locus_tag="VIJ87_05715"
     CDS             complement(<1..771)
                     /locus_tag="VIJ87_05715"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase family protein"
                     /protein_id="HEY5443959.1"
                     /translation="MLNPKSFLFDQDAHGIATITLNRPERLNALTFEVYRELTDTFAA
                     LRQQKDVRVVVITGAGRAFCSGGDVHDIIGELFDRDMEGLLEFTRMTCELIHNIRATP
                     QPVIASLNGTTAGAGACIALASDIRLASDTAKIAFLFVKVGLSGADMGAAFLLPRIVG
                     LSKATELLYTGDFVSAEEAKDIGLYNQVVPSDQLAQTTRTFAERLAQGPAFAVAKTKE
                     MLNRELNMNLETALESEAQAQAICMQHPDYREAYEAFVA"
     gene            complement(774..1181)
                     /locus_tag="VIJ87_05720"
     CDS             complement(774..1181)
                     /locus_tag="VIJ87_05720"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEY5443960.1"
                     /translation="MAFTLINPESLGNPHGYSNGLLTDSAGKLLFIAGQIAWDKNQRV
                     VSEDFVEQFDQALANVTSVVTEAGGSSADIARLVIYVTNKIEYRKRVKEVGERYRKHM
                     GKHFPAMVLVEVKSLLDDAAMVEIEGIAVLNRA"
BASE COUNT          365 a          387 c          357 g          370 t
ORIGIN      
        1 cgcgacaaat gcctcatacg cttcacggta atcaggatgt tgcatgcaaa tcgcctgtgc
       61 ttgtgcttca gattccaggg ccgtttccag gttcatgttg agttcccggt tcaacatttc
      121 ctttgtcttg gcgactgcga aagccggtcc ttgtgccaat cgctcggcaa acgttcgagt
      181 cgtctgcgcc aactgatctg acggtacgac ctggttatag agtccgatgt ccttcgcttc
      241 ttcagcggac acaaagtcac cggtatagag aagctccgta gcttttgaca acccgacaat
      301 tctcggcaac aaaaacgccg ctcccatgtc tgcgccggac aatccgacct ttacaaacag
      361 aaaagctatc tttgccgtgt cacttgccag gcgaatgtcg gacgctagcg caatacaggc
      421 accggcaccg gccgtagttc cattcaaact ggcgatgacg ggttgtggcg tggcgcgaat
      481 gttatgaatg agttcgcaag tcatgcgtgt gaactcgagc aagccttcca tgtcgcggtc
      541 aaacaactca ccaatgatgt cgtggacatc tcctcccgag caaaacgcgc gaccagcacc
      601 agtgataaca accacacgaa catccttctg ttgccgcaac gccgcaaacg tgtcagttag
      661 ttcgcgatag acttcaaacg tgagcgcatt caaccgctcg ggacgattca aagtaatcgt
      721 cgcaatgccg tgcgcatctt ggtcaaacaa aaagctctta gggttcagca ttctcatgct
      781 cgattcaaaa ctgcaatgcc ctcgatctca accattgctg cgtcgtccaa taaacttttg
      841 acctccacga ggaccatggc agggaagtgt ttccccatat gttttcgata acgttcgccg
      901 acctctttta ctcgtttgcg atattcgatc ttgttggtta cgtagataac cagccgtgcg
      961 atatcggcag aactgccacc cgcttcagtt actactgaag tcacatttgc gagggcctga
     1021 tcgaactgtt cgacaaagtc ttcgctgacg acacgttggt tcttgtccca ggcaatttgg
     1081 ccggcaatga acagaagctt gcctgctgaa tctgttaaca aaccgttgga ataaccgtgc
     1141 ggattaccga gtgattcggg gttaataagt gtaaaggcca tttcgatcac aggttaattg
     1201 ctgagtgttg attagtaaat aggaattgcc ggagagagaa gctcgtcgca gtttgagaac
     1261 aagtagaaaa gggcggttta cccacgctaa ttgccgatcg agtagttgtt aattggaacc
     1321 agcgggggta aaccgccttc cttccttctc atttgaagat ctgggccaaa gcgaaagagc
     1381 cgccaatatg aggcggctct tttcgaaagc attaattcgc gcttataaga tcttgtctaa
     1441 cagtgaccct aactgacctg caaggtttcc gctcggatc
//
LOCUS       DATCGC010000604         1867 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_310351, whole genome shotgun sequence.
ACCESSION   DATCGC010000604 DATCGC010000000
VERSION     DATCGC010000604.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1867
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_310351"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1108
                     /locus_tag="VIJ87_05725"
     CDS             <1..1108
                     /locus_tag="VIJ87_05725"
                     /inference="COORDINATES: protein motif:HMM:NF023591.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443961.1"
                     /translation="QVISFAGDKIKKEDVEMALGVAGADILTRIMEAVAENKPAAAIK
                     VVDDVVMRGHDLRNFCRDLLAHFRDLLVTKVSGSEELLESAVCEPQELKRQAALFSES
                     DLVRFFHSLAETETKLRTATQPRYQLEIGIVKLMELRGVESIGEILNRLAALESGQPL
                     PTVSRTPSSSSGGPADSGSRGSKSTVGSRSAGSSFAATATSPAFETPTEQQRPDPVLE
                     TPAPAQLNTNEQAPVLSADAPAIERIKAVLETQRKMLLVTVLESAQSTVLEAGELYVE
                     FAPESRHFRDTLTKPENIKILREACQQVTGQETGVRIAVKDPEAQNQPLSREEEERLA
                     KQNLRASAESLPIVQEMLKKFRGEIVDVRRVDPK"
     gene            1179..1385
                     /locus_tag="VIJ87_05730"
     CDS             1179..1385
                     /locus_tag="VIJ87_05730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443962.1"
                     /translation="MRDPILAGVLSLIIPGVGQLYNGRILAGILWLIFTPGFWIGTGG
                     TLGWVCHIVAAYCAYSYAKEHPVR"
     gene            complement(1550..>1867)
                     /locus_tag="VIJ87_05735"
     CDS             complement(1550..>1867)
                     /locus_tag="VIJ87_05735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443963.1"
                     /translation="NRNEALAVGDQGKIIYTKDAGQTWLTQESITSSSLFSIAYRGGT
                     NVWVAGRGGAILRRVDPIATVSLPVSHLPPLLKGGAARIPDASAEGFDDGDIPRALPP
                     KKP"
BASE COUNT          435 a          491 c          507 g          434 t
ORIGIN      
        1 ccaggtaatc agtttcgccg gcgacaagat caagaaagaa gacgtggaga tggcgcttgg
       61 tgtggccggc gctgacattc tcacgcgcat catggaggct gttgccgaaa acaaacccgc
      121 ggcggcgata aaagtggttg acgacgtcgt gatgcgcgga catgacctgc gcaacttctg
      181 tcgggatctg ctggcgcact tccgagacct cctggttacg aaggtatccg gcagcgaaga
      241 actccttgag tcggcagttt gtgaacccca ggaattgaaa cgacaggcag ccttgttctc
      301 cgagtcagat ctggttcgat tctttcattc actggctgaa accgaaacga agctccgcac
      361 tgctacccag ccgcgttacc agttggagat tggaattgtg aagttgatgg agctacgagg
      421 tgtcgagtcg attggtgaaa ttctgaatcg actcgccgca cttgaatctg gtcagccatt
      481 acccactgta tcgcgcacgc cttcgagttc tagtggcgga ccagctgact ctggaagtcg
      541 tggtagcaag tcaacggtag gttcgcgttc ggccggttcg tctttcgctg caactgcaac
      601 gtcgccggct ttcgaaacac cgaccgagca gcagcgaccc gatccggttc ttgagacgcc
      661 ggcgcccgcg cagcttaata caaatgaaca ggctccggtt ctcagtgccg acgcgccggc
      721 aatcgaaaga atcaaagccg ttctggagac tcagcgaaag atgttgctcg ttacagtact
      781 tgagtcagcc caatcaacag tgctcgaagc cggtgaactc tatgtggagt ttgcgcctga
      841 gtcacgtcat tttcgagaca cgctgaccaa gccagagaac atcaagattc tccgtgaagc
      901 ttgccaacaa gtgacgggtc aggagacggg cgtacgaatc gcggtcaagg atccagaagc
      961 tcaaaaccaa ccactgagcc gtgaagagga agaacgactc gcaaaacaaa atctccgagc
     1021 gtcagctgaa agtcttccga tcgtacaaga gatgcttaaa aagtttcgcg gagaaatagt
     1081 ggacgtacga cgggtcgacc caaaatagtt ttcacccacc tgtcgaacaa actcaacaag
     1141 cctgtcgtat agagaatctc gacggaggta ttgaagagat gcgcgatcct attttggcag
     1201 gtgtattgag tctaattatt ccgggtgttg gccagctcta taacgggcga attcttgctg
     1261 gcattttgtg gttgatcttc acgccaggct tttggattgg gacgggcggc acacttggtt
     1321 gggtatgcca cattgtcgca gcgtattgcg cttattcata cgctaaagaa cacccggttc
     1381 ggtgaagcag gagcaggagc aggacgttac tacggtttcc actgagtcaa gcgaaaaagg
     1441 cagcgaacta ttcgctgcct tttcttttct gaacttggtc gcgcctgccc gtgatcctgc
     1501 ttcgtgctcc tgcctactgc tcctgcctcc tgctttctgc gtattggcgc tacggtttct
     1561 tcggtggtaa tgctcgtgga atgtcgccat cgtcaaaacc ttcggctgaa gcatcgggaa
     1621 ttcttgccgc tccgcctttc aggagtggag gcagatgcga caccggcaga cttacagttg
     1681 cgatcgggtc tactcgtctc agaatagctc cacctcgtcc agcaacccac acattggtgc
     1741 caccccgata ggcgattgag aacaacgaag aactcgttat gctttcctgg gtaagccagg
     1801 tttggccagc gtccttggtg tagataatct ttccctgatc accaactgcc aacgcttcgt
     1861 tccgatt
//
LOCUS       DATCGC010000605         1057 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_310389, whole genome shotgun sequence.
ACCESSION   DATCGC010000605 DATCGC010000000
VERSION     DATCGC010000605.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1057)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1057)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1057
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_310389"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1057
                     /locus_tag="VIJ87_05740"
     CDS             <1..>1057
                     /locus_tag="VIJ87_05740"
                     /inference="COORDINATES: protein motif:HMM:NF024545.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEY5443964.1"
                     /translation="VQQILLKVARKDLDATVEQKAKDLIAKLRGSGGETTEAAFSEAA
                     KGNSEDPATAKNGGFLTRLIKKNPNKPDALYERAVDMQPGEISDIPIRYAGNWYILRR
                     GEAVPKTFEEAKPELLVSLRNRKGYGSAFQIANKAQALLKDTKDAQKVAQQFAAEANM
                     SAADMVRETPFIKPQDDVPNIGSNQQFEAAIAPLNNANDVGDATGVKGGFAIPMLIDK
                     KEPRIPDFDEVKTKVTESVKQQKAKEQVEQKAKDLLASATTPDALKAAGEKEGFEAGT
                     EESFKLGSTLGKAGSSTALDDLIYAMKSGEMLKSPLKVEDNWVIAGVSKREEADLAEF
                     AKQRDTLKGSMISERQSQ"
BASE COUNT          310 a          246 c          304 g          197 t
ORIGIN      
        1 gtccagcaga ttctcctgaa agtcgctcgt aaagatctcg acgcaacggt tgaacaaaag
       61 gccaaggacc tcatagctaa gctgcgtgga agtgggggag aaacaactga agccgcgttc
      121 tcagaagccg ccaagggaaa ctctgaagat cctgccacgg caaagaatgg tggattccta
      181 acccgactga ttaagaagaa tccgaataag ccagacgccc tttatgagcg ggcagtcgac
      241 atgcaacccg gcgaaatctc tgacatccca atcaggtacg ccggtaactg gtacatactc
      301 cgtcgcggtg aagccgtgcc gaagactttc gaagaagcca aacctgaact gttagtgtcg
      361 ttgcgcaatc gcaagggtta cgggtcagca tttcagatcg cgaataaggc ccaggcgctt
      421 ttgaaggata cgaaggatgc ccagaaggtc gcgcagcaat ttgcggctga ggcgaacatg
      481 tcggcggcag atatggtccg cgagacacca ttcatcaaac cgcaggacga cgtgccgaat
      541 atcggaagca atcagcagtt tgaggcagca atcgctccgc ttaacaacgc aaacgacgtt
      601 ggcgacgcga ctggcgtcaa gggtggtttc gctattccaa tgttgattga taagaaggag
      661 ccacgcattc ccgatttcga tgaagtgaag acaaaagtca cggagtcagt aaaacagcag
      721 aaggcgaagg aacaggttga acagaaggca aaagacctgt tggcgtccgc gacaactcct
      781 gacgcgctaa aagctgccgg tgaaaaagaa ggatttgaag caggcaccga ggagtcgttc
      841 aaattaggat cgaccctggg taaagccggt tcaagtaccg ccctcgatga tctgatttac
      901 gcgatgaaat caggtgagat gttgaagagt cctcttaagg tcgaggacaa ctgggtaatc
      961 gcaggtgtgt ccaagaggga agaagcagat cttgcggagt ttgctaaaca gcgggacacg
     1021 ttgaagggtt cgatgatcag tgaacgccag agtcaaa
//
LOCUS       DATCGC010000606         1775 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_407587, whole genome shotgun sequence.
ACCESSION   DATCGC010000606 DATCGC010000000
VERSION     DATCGC010000606.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1775)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1775)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1775
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407587"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            91..1104
                     /locus_tag="VIJ87_05745"
     CDS             91..1104
                     /locus_tag="VIJ87_05745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443965.1"
                     /translation="MEKLGTPQRAPGSAPAKRIPNGTVLVVATLLVAVAISAFGIYKM
                     RGRKRPSISFQSVKLLKLTTSGNVVVAAISPDGRDFAYVTSESGKQTLWIKQVASAGR
                     NLEIVPASEGNYHGLSFSPDGNFIYYVRSNEGQPNTIFRIPVLGGTSITLSKLVDSPV
                     AFSPDGKFMSYLRGYPDSNETALIVAPIDGTSERKVVALKNPSGFVVTSAPAWSSDSK
                     QIAAVGKEEESGAPYQRILIVTVADGSSTSLEKAHWLQIGRLAWCADGNSLIATATDQ
                     GSPGSQVYQVSYPSGQAQRVTNDLTDYQQVTLTRDSRQILAVQTESQANLWTRDVILL
                     SGP"
     gene            1230..>1775
                     /locus_tag="VIJ87_05750"
     CDS             1230..>1775
                     /locus_tag="VIJ87_05750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443966.1"
                     /translation="MNNGELEHNLSMASHTESAATPETEVSSMFQHLEEQAEVPVVKS
                     ELDQQVDAAVRDVKSWFVHQAGPRSSSSKQAPQIDGSIPHLVETMAEENESEIVAVES
                     EPVYQDPAASVEERRIEDSARAVERRMFEIADVRQQVENRLLIKLEIEAKLQAEATVR
                     RKEEEDLRRQADEDAARRRRED"
BASE COUNT          473 a          430 c          476 g          396 t
ORIGIN      
        1 caaagaatcc tggaagcgtc aacaagtctt aaaaagacag tctaaaaact tctcaaaatc
       61 tctcggttta agcgtttcta cttataagcg atggagaaac taggaacgcc gcaacgagcg
      121 ccaggttcgg cgccagctaa acgaattcca aacggtacag tgctagtagt ggcaacactc
      181 ctggtcgctg tcgctatttc agcgttcggc atctacaaaa tgcgaggccg taaaaggcct
      241 tcgatctcat ttcaaagcgt caaacttttg aagttgacca ccagcggtaa cgttgtggtg
      301 gcagcgattt cacccgacgg cagagatttc gcttacgtga catcggaatc aggtaagcag
      361 acgctctgga tcaagcaagt cgcgagtgct ggtcgaaacc ttgagattgt tcctgccagt
      421 gagggcaact accacggtct ttcgttttcc ccagacggta atttcatcta ctacgtccgc
      481 tcgaacgaag gacagcccaa tactatcttt cgcattccgg tgctcggtgg tacttcgatc
      541 actttgagca aacttgtgga cagtccggtg gcattctctc ccgacggcaa gttcatgtct
      601 taccttcgtg gatatcctga ttcaaatgag actgctctga ttgttgcgcc gatcgatgga
      661 actagtgagc ggaaggttgt tgcactgaag aacccgtctg ggtttgtagt tacatcggca
      721 cccgcgtggt cgtcggacag caaacagatt gctgccgtag gtaaagagga agagtccggc
      781 gctccgtatc agcggatcct gattgttacg gtggcggatg gaagcagcac atcgttggag
      841 aaggcgcact ggctacaaat cggccggctc gcatggtgtg ctgacggtaa ttcgcttatc
      901 gcaacggcga ccgatcaagg ctctccaggg tcccaggttt atcaagtctc ttatccatcc
      961 ggacaagcgc agcgagttac aaatgatctg actgactatc agcaagtcac actgactcga
     1021 gattcgcgac aaatactggc agtccagact gaaagccagg cgaacctgtg gaccagggac
     1081 gtaatcctgc tatctggacc ttagaggttc acagccgcag acatacgctg atgagaatca
     1141 gtggtggtct ttctgatctg cgattgttct gcgcaaatgt gtacctcaag acttattttt
     1201 catagcaaag ttttaaggag taacacggat tgaacaacgg ggaactcgaa cacaatcttt
     1261 ctatggcgag tcatacggaa tccgccgcga ctccagaaac agaagtgtcc agcatgtttc
     1321 agcacctcga ggagcaggct gaagtaccgg tcgttaaatc ggagttggat caacaggtcg
     1381 acgcggctgt acgagacgtt aagagttggt tcgttcacca ggccggacca aggtcgtcat
     1441 ccagtaagca agcgccacag atagatggaa gtattcctca tctggttgaa acaatggcag
     1501 aagaaaacga gagcgagatt gtcgcagtgg agtcagaacc tgtttatcaa gacccggcag
     1561 cttcggttga agaacgccga attgaagact ccgctagggc tgttgagcga cgaatgtttg
     1621 aaatcgccga cgtccggcag caggtcgaaa atcggctgct gatcaagctt gaaatcgagg
     1681 ccaagttaca agccgaagcc accgtcagac gaaaagagga agaagacctt cgtagacaag
     1741 cagacgaaga tgcagcacgg cggcgtcgag aagat
//
LOCUS       DATCGC010000607         1184 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_407588, whole genome shotgun sequence.
ACCESSION   DATCGC010000607 DATCGC010000000
VERSION     DATCGC010000607.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1184)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1184)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1184
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407588"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(6..>1184)
                     /locus_tag="VIJ87_05755"
     CDS             complement(6..>1184)
                     /locus_tag="VIJ87_05755"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY5443967.1"
                     /translation="GRESLEPKPEEVLPEPPYPQRPDAREMTHKEYLKLNGVRMWKTW
                     GAPYFKSRTLKNRKALRPIIPYLFTDWKCNLDCHYCWSYDNKVKGMTEDVAKRSIDWL
                     HSIGSRVLALMGGEPLLRPKFIHKIVYYSAQKDIFVYLPTNGRLMKPDVIDRLGDAGL
                     ATVNLAVDSVKERKSLPKALDPIRPYFDYLVKKQKVYGYTVMFNINICHNNMDDVKEL
                     TEIAHDHGIATDYHINESPMMEQDHFKHLDENVTYLTPDDWSKVDDLLDYLDDKRHNE
                     GYKMVNQSKHMQDMKQLMRGEVPPWKCRAGQNSLIIRTDGTLAPCFPMYSASHDWGTI
                     ENPKFDHAQLDEMKQECSKHCLSTCNYILAYCYDTKRVLKWTLKQAMHGFKGSTDTIQ
                     "
BASE COUNT          238 a          326 c          309 g          311 t
ORIGIN      
        1 ccactttact gaattgtgtc ggtcgatcct ttgaagccgt gcatcgcctg tttcaaggtc
       61 cacttcaaca cccgcttggt gtcatagcag taagcgagaa tgtagttgca ggtcgaaaga
      121 cagtgcttcg aacattcctg cttcatctca tccaactgcg cgtgatcgaa cttcggattc
      181 tcgatggtgc cccagtcgtg actggccgag tacatcggga agcatggcgc cagcgtgccg
      241 tcagtgcgaa tgatcagcga gttctggccc gcgcggcact tccatggcgg cacttctccg
      301 cgcatgagct gcttcatgtc ctgcatgtgc ttgctctggt tgaccatctt gtagccttcg
      361 ttgtggcgct tgtcgtcgag ataatcgagc agatcgtcaa ccttcgacca gtcgtccggc
      421 gtcaggtacg tgacgttctc atcaagatgc ttgaagtgat cctgctccat catcggcgac
      481 tcgttgatgt gatagtcggt cgcgataccg tgatcgtgtg cgatctcggt cagctctttt
      541 acatcgtcca tattgttatg gcagatgttg atattgaaca tcaccgtgta gccgtagacc
      601 ttttgcttct tgacgagata atcgaagtaa ggtcgaatcg gatcgagcgc tttcggcaga
      661 gactttcgtt ccttcactga atcgaccgcc aggttgaccg tcgcgagtcc ggcatcaccg
      721 agccgatcga tcacatccgg tttcatcaag cgtccgttcg tcggcaggta gacgaagatg
      781 tctttctgcg cgctgtagta gacgatcttg tgaatgaact tgggccgcaa caacggctct
      841 ccacccatca acgccaacac acgcgagcca atcgagtgca accagtcgat cgaacgtttc
      901 gcaacgtcct cggtcattcc cttcaccttg ttgtcgtacg accagcaata gtgacaatcg
      961 agattgcact tccagtcggt gaacaggtaa ggaatgatcg gccgcaatgc ttttctgttc
     1021 tttaacgttc gggatttgaa ataaggcgcg ccccaggtct tccacatacg aacaccattc
     1081 agcttcaggt attccttgtg ggtcatctct cttgcgtcgg gacgctgcgg gtacggcggc
     1141 tcgggcagaa cttcttcagg ctttggttcc agtgactcgc ggcc
//
LOCUS       DATCGC010000608         1798 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_77340, whole genome shotgun sequence.
ACCESSION   DATCGC010000608 DATCGC010000000
VERSION     DATCGC010000608.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1798)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1798)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1798
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77340"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..292)
                     /locus_tag="VIJ87_05760"
     CDS             complement(<1..292)
                     /locus_tag="VIJ87_05760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443968.1"
                     /translation="MFTRKRLIFCTVLCVVLYSAAVTTSRASTFTIDTTPPNVNISTF
                     GYPNTATYGQTITAVAGTTQLNSFSFYIQTSGTITYRAYVMAWDGTKATGPIL"
     gene            1042..>1798
                     /locus_tag="VIJ87_05765"
     CDS             1042..>1798
                     /locus_tag="VIJ87_05765"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: protein motif:HMM:NF005146.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transaminase"
                     /protein_id="HEY5443969.1"
                     /translation="MTFDQSKWVWRNGTIIPWRDATTHVSSHALHYGSGVFEGMRCYE
                     TEDGPAIFRLDEHLDRLYQSAAVHGMPIPYQREELSEAICELIEHNGFKSCYVRPLCY
                     YGSSSLSLHPAKCPVEVVILVWPWAPYLGAEGLEHGVRVTVSPWKKFHSDMMPTTAKA
                     CGQYINSILAVRDAVSRGFDEALLLDTQGNIAEGSGENLFVVRDGEVLTNDKRDSILL
                     GITRDAVIQIARDLGHKVNVGPIALDDLLQADEA"
BASE COUNT          422 a          420 c          510 g          446 t
ORIGIN      
        1 aaagaattgg gcccgtggcc ttggttccat cccaggccat cacgtaggcg cgataagtga
       61 tcgttcccga tgtctggata tagaaagaga acgagttgag ctgtgtggtg ccggcgaccg
      121 cggttattgt ctgcccatag gtggcagtgt ttggataacc gaaggtgctg atgtttacgt
      181 tcgggggagt tgtgtcgatg gtgaatgtag aagcgcgcga ggttgttact gcggctgagt
      241 aaaggacaac gcacaaaact gtgcagaaaa tgagccgttt gcgagtgaac atgtatgctc
      301 cttggcggtc agggcttaac agcctggtct ttgaaggttt ccggtgatca atgaggacac
      361 ccctatcgct agttcactca tgaaagaaga ctcgcgagtg aatacagtct cgccaggccg
      421 ctgacctgtg cccaggtcag cggaggggtg cgtcgacaaa aatcacggac ggtagttctg
      481 ggcgcgggta ggttggggga attcctaaag cgctaatccc ttggacccaa gtgaggcctg
      541 ctgggaaccc cttccttact tacagcactt aagcgcggga gacgtttcaa tgctgcctgc
      601 gagaactcga atttttcgtt tccaaccctt aacgccccaa ccgaaggagt tagctatcac
      661 ggaaaagtag ttttgttcgt ttaaagtttt cgaaagttga cgccaggggt attggaggtc
      721 gagcgaggtt ggactgttta tggttcgtta aaaataatca attatgcaaa ggaggatctt
      781 gggggctaga gtagctgtga ggacgttttg tctccccagg gatgacgcaa atgacacatt
      841 cggacgcgac ggcaatttta cttttagcgg tggactcgcc agcgagccgc atcattgtgt
      901 cctcccgcgt gctcactctt acaagcattg gtattagggc tgattcaact taatggcctg
      961 caaccactct tgagtactta acgggccatc aacaaagttg gtggcccttt tgctaattaa
     1021 tgacaagtca tggagtaaat catgaccttt gatcagtcaa agtgggtatg gcgaaacggc
     1081 accatcattc cctggcgcga cgccacgacg cacgtgtctt cgcatgcact tcattatggt
     1141 agcggcgtgt ttgaaggaat gcgctgttac gagaccgagg atggtccggc gatatttcgt
     1201 ctcgacgaac acctcgatcg actctatcag tcggctgctg tacacggaat gccgattcct
     1261 tatcagcgtg aagaactctc cgaggcgatt tgtgaactga tcgaacataa cggattcaag
     1321 agttgttacg ttcgaccact ctgctattac ggcagcagtt cgctgagtct tcacccagca
     1381 aagtgtccag tcgaagttgt gatccttgtt tggccgtggg cgccatacct gggtgccgag
     1441 gggttggaac atggagttcg cgttaccgta tcgccgtgga agaagtttca ttcagacatg
     1501 atgccgacaa cagctaaagc ctgcggtcag tacatcaact cgatacttgc cgtgcgcgat
     1561 gcggtgagcc gaggttttga cgaggctttg ttactcgata cgcagggaaa cattgccgag
     1621 ggttctggag agaatctatt tgttgttcgc gatggtgaag tcctgaccaa cgacaaaaga
     1681 gattcaattc tgctcggtat cactcgcgac gcagtcattc agattgcgcg tgaccttggc
     1741 cacaaggtaa acgtcggacc cattgcgctc gacgatctgc tccaagccga cgaagcat
//
LOCUS       DATCGC010000609         1183 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_77342, whole genome shotgun sequence.
ACCESSION   DATCGC010000609 DATCGC010000000
VERSION     DATCGC010000609.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1183)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1183)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1183
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77342"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(67..363)
                     /locus_tag="VIJ87_05770"
     CDS             complement(67..363)
                     /locus_tag="VIJ87_05770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443970.1"
                     /translation="MDDPFSFGQLFRLLVIFLSFLAMWSLWIVRRDRKHRWTSKTRDI
                     WLVLFLWTVAAAEGNIELWYRHARPSGAIFLVVFILLWTIKGVFNPDKLEKDLE"
     gene            complement(376..1038)
                     /locus_tag="VIJ87_05775"
     CDS             complement(376..1038)
                     /locus_tag="VIJ87_05775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443971.1"
                     /translation="MANTFEVVIDNAKIQVHCHDEEPPATTLFIDVPLTRGRVQRTEE
                     DGSSTDEFHDYPASWPETMEYNRWSDPTYTHLGGTVINPVDWDGITIGGSDGFVPDTP
                     DGYALTEIRFILKAHMTGGAPDVITEDTSSWGYLPAPTKSPYFADVHSGTSRVFDDFP
                     TSEPADWIECGEPFSLDNDHFASQWRITKWFAVIPSPPYPAEPRAIVLNGMGLRFVYD
                     PI"
BASE COUNT          334 a          317 c          253 g          279 t
ORIGIN      
        1 gtggtcttat tgaagtgtcc ggtcgtgcta aacgtgatcg gtcctctagc cacagcctac
       61 ctcccttcat tctagatcct tttctagctt gtctgggttg aaaactccct tgattgtcca
      121 cagtaggatg aacaccacaa ggaaaatcgc cccacttggt cgagcatggc gataccaaag
      181 ctcgatgttg ccttcagccg cagcaaccgt ccacaagaac agaacgagcc aaatatcccg
      241 agtcttactc gtccaccgat gttttctgtc tctcctaacg atccacaaac tccacatagc
      301 gaggaaactg agaaaaatca ccaagaggcg gaagagttga ccgaatgaaa acggatcatc
      361 catcaattct ccttatcaaa tcggatcgta aacgaaccga agtcccatac cattcagaac
      421 aatcgctctg ggttcagcag gatatggggg cgaaggaatc acagcaaacc atttagttat
      481 tcgccattga gaagcgaaat gatcgttatc aagactgaaa ggttctccac attcaatcca
      541 atccgccggt tcagacgtcg ggaaatcatc aaagactctg ctcgtcccac tatgcacgtc
      601 tgcgaaatac ggagatttcg taggagccgg tagataaccc caactcgaag tgtcttctgt
      661 gatgacatct ggagccccgc cagtcatatg agccttcaga atgaatcgaa tttcagtcaa
      721 ggcgtatcca tccggcgtat caggaacgaa accgtctgaa ccgccgatcg ttattccgtc
      781 ccaatcgaca ggattaataa cggttccacc aagatgtgta tacgtcggat cgctccaccg
      841 attgtattcc attgtctcag gccaagaagc cggatagtca tgaaattcgt cggtagaaga
      901 accatcctct tccgttcttt gaacacgacc ccttgtgaga ggaacatcga taaacaaagt
      961 cgtagcagga ggttcttcat cgtggcaatg cacctggatc ttcgcgttgt caatgacaac
     1021 ctcaaatgta ttagccaaag ctcaccccat agaatccagc gtggaaggtc acttgacaca
     1081 agggatcctt gccactcgaa tcgatgactt gagtcatcaa cgacaacgac gcattgttcc
     1141 ttgcaaccaa tttgaatgtg gtactttccc acccaacatc gag
//
LOCUS       DATCGC010000610         1430 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_208056, whole genome shotgun sequence.
ACCESSION   DATCGC010000610 DATCGC010000000
VERSION     DATCGC010000610.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1430)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1430)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1430
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_208056"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1430)
                     /locus_tag="VIJ87_05780"
     CDS             complement(<1..>1430)
                     /locus_tag="VIJ87_05780"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY5443972.1"
                     /translation="NVITKSGGNDYHGLASLFFRNNVFDSSNSLDPTQTDAPFLQRWD
                     YSLALGGPIVKDKVFFFGSGERIRENRRLNFVFPPGTPQIARNFEQQFDNPSRVFDTR
                     GFLKFDEHFGRHNLSQSVNYTNGNVREFLPLSNATDLPSRRNDTGARHLLLGFSDTVL
                     AGDMGNPWVITLRGGYRGDTSETRPSHPEAGVGTTFQMFSSFNTGALFGDLGSFSFGN
                     NTSRTALEQKYTSLSANAAKLYKDHEVKFGWNYLRTRVDGTESQILNLQLFATVPDFT
                     TFGPFNAGFFTVTTAGGLTPQANEIHLRNNYNALFLQDDWKFHPNLTLNFGMRWDYDS
                     EFVTKRNLSPRVGFAWSAAPNTIIHGHFGVFYDQFRLGLVRDVPAFGGADRRVVQPFS
                     YPRGFYGNPSLAPAAINASLFPGGLCVLPNLTDAQISAGNVPCPVAPTNLPIGIDRLN
                     RVVAAGHAQIPANSVINLSNIQSLSGL"
BASE COUNT          370 a          344 c          386 g          330 t
ORIGIN      
        1 agaccagaca gagattgtat gttgctcaga ttaatcactg aattcgccgg aatttgtgca
       61 tgccccgcag ccaccaccct gttaagtcgg tcgatgccaa tggggagatt agtaggagcg
      121 actggacacg gaacattgcc tgcagagatt tgggcatcgg ttaagttcgg taacacacat
      181 agcccaccag gaaagagcga tgcatttatg gctgcagggg caagactcgg atttccgtag
      241 aatccgcgtg gataagagaa gggttggact actcgccggt ccgcgccgcc gaacgcggga
      301 acgtctctaa ccagacccag tcgaaactga tcgtaaaaca ctccgaagtg tccatgaata
      361 attgtgttcg gcgctgccga ccatgcgaag cctacgcgag gcgataggtt tctcttcgtg
      421 acgaattcag agtcatagtc ccagcgcatg ccgaaattta gagtgaggtt cgggtggaac
      481 ttccaatcgt cctgcaagaa cagcgcgttg tagttgttgc gcaaatgaat ttcattagcc
      541 tggggcgtta gacctccagc ggttgtgacg gtaaagaaac ccgcgttgaa aggtccaaag
      601 gtggtgaagt cgggaacagt ggcaaagagc tgtaggttta gaatctgcga ttctgtgcca
      661 tcaacgcgag tccgcagata gttccaaccg aacttaacct catggtcctt gtacagcttg
      721 gcggcattcg ccgataaaga ggtgtacttc tgctccagtg cggtccgcga tgtgttattc
      781 ccgaaagaga acgaacccag atctccgaaa agcgcgccgg tattaaatga actaaacatt
      841 tggaacgtag ttccgactcc ggcttcagga tgggacggac gcgtttctga ggtatcacca
      901 cggtatccgc cacgcaaagt tattacccac gggttgccca tgtcaccagc gaggacggtg
      961 tcgctaaacc cgagcaacaa gtgtcgagca ccggtatcgt ttcttcgcga tggtaagtct
     1021 gtagcgtttg agagaggcag aaactccctg acgttgccgt tagtatagtt gactgattgg
     1081 ctgaggttgt ggcgtccgaa gtgctcgtca aactttagaa agccgcgcgt atcgaaaacg
     1141 cgagagggat tgtcaaactg ttgttcaaag tttcttgcga tctgcggcgt acccggcggg
     1201 aagacaaagt tgagtcgccg attctctcta attctctctc ctgacccgaa aaagaaaact
     1261 ttgtccttaa caatcggacc accaagcgca aggctgtaat cccaacgttg taaaaatggc
     1321 gcatcggtct gagtcggatc taatgagttg gacgaatcga atacattgtt tcgaaagaat
     1381 agagaggcca gcccatgata atcattaccc ccactcttag taatcacgtt
//
LOCUS       DATCGC010000611         1047 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_441607, whole genome shotgun sequence.
ACCESSION   DATCGC010000611 DATCGC010000000
VERSION     DATCGC010000611.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1047
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_441607"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..349)
                     /locus_tag="VIJ87_05785"
     CDS             complement(<1..349)
                     /locus_tag="VIJ87_05785"
                     /inference="COORDINATES: protein motif:HMM:NF036588.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase N-terminal
                     domain-containing protein"
                     /protein_id="HEY5443973.1"
                     /translation="MKIVSACMTIVAGLFLLFVPFTGANQADDTTIKINGYTSGATPF
                     ISNLHLTASDTSALKSIQFTILPKHGSVTRPLSATYASEYLINRGFENSHTGEITLPV
                     YGLYDGYTNSVRLT"
     gene            complement(566..>1047)
                     /locus_tag="VIJ87_05790"
     CDS             complement(566..>1047)
                     /locus_tag="VIJ87_05790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443974.1"
                     /translation="LAPGAYTVTVRGANSSSGTGLVELYDLSPQSNSKLANISTRGSV
                     GTGDNVLISGFIVGEVGSATVIVRALGPSLGPLGVSNPLSDPVLTIYDSKGTAIVTND
                     AWRDNVNALDIQMHALSPPNERDSALVLHLPAGSYTAIVRGANGATGNALVEVYDID"
BASE COUNT          244 a          267 c          286 g          250 t
ORIGIN      
        1 aggtcagcct gacgctgtta gtgtatccgt cgtacagtcc atagactggc aacgtaatct
       61 ctcctgtgtg agaattttca aatcctcggt taatcaggta ttcactggca taagtggctg
      121 aaaggggtcg tgtgacagag ccgtgttttg gcaggatcgt gaattgaata ctctttagag
      181 cgctggtatc gctggctgta agatgcaggt tactgatgaa cggagtggcg cctgacgtgt
      241 agccgttgat cttgatcgtg gtgtcatctg cctgattggc ccccgtaaac gggacgaaga
      301 gcaagaagag acctgcaaca atagtcatac atgcggagac aattttcata atccttactt
      361 taaagaacta acattccgta accgggcgag atcatctcaa acgaggttgt catttgtcca
      421 gcaagaagat tcggtttcag aattctccag cagacacgat tagaggccca atgaatcaat
      481 ggatgctcgg tcgcttccgc tctgcgcgcg tcggctgtcg gggtgtggca ccgttcgacc
      541 gaaatatttg cacagaacag cgggattagt cgatgtcgta cacttcgact aatgcgttgc
      601 cggtagcccc gttcgctccc cgtacaatgg ccgtatacga acctgcaggc aggtggagca
      661 cgagtgcgga gtcccgctca ttcggtggcg agagtgcatg catctgtata tcgagagcgt
      721 taacattatc gcgccaggcg tcgttggtga cgatagcagt ccctttcgag tcgtagatgg
      781 ttagcacagg gtcacttaag ggattgctta cccctaaagg acccagtgat ggaccaagcg
      841 cacgcacaat cacggtcgcg ctccccacct ctccaacgat gaacccgctg atgagcacgt
      901 tgtcccccgt gccaaccgaa cctcgcgtac ttatgtttgc caacttggag ttggattgcg
      961 gcgagaggtc gtaaagctca accaggccag tccccgaact tgagttcgct cctctcactg
     1021 tgacagtgta agcaccgggc gccaagt
//
LOCUS       DATCGC010000612         3976 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_77419, whole genome shotgun sequence.
ACCESSION   DATCGC010000612 DATCGC010000000
VERSION     DATCGC010000612.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3976)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3976)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3976
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77419"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..493
                     /locus_tag="VIJ87_05795"
     CDS             <1..493
                     /locus_tag="VIJ87_05795"
                     /inference="COORDINATES: protein motif:HMM:NF014800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443975.1"
                     /translation="VRTGKRLGRSVTEIAIHLKRTPQALFARTPDEQIEPNVIVLRIQ
                     PNEGIIVSFGAKHPGFEMRTNVVHMDFCYESGFGVRSPDAYETLLLDAMQGDATLFTR
                     NDEVEAQWRLITPIEEAWATQGETVFTTYPAGSDGPPEADEMLARNGHRWRKLKETFA
                     GCD"
     gene            602..1339
                     /gene="pgl"
                     /locus_tag="VIJ87_05800"
     CDS             602..1339
                     /gene="pgl"
                     /locus_tag="VIJ87_05800"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: protein motif:HMM:TIGR01198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017057 - 6-phosphogluconolactonase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HEY5443976.1"
                     /translation="MKPSIEILGDPEQLARAAAQRIVVHSKAAVSKNGTVTIALSGGS
                     TPKRLYELLANADEEFFSQISWDQVQFFWTDERHVGPDHPDSNYRMVNEAMLSKVPIE
                     SAQVHRMLGELTDPNEAAHRYDSLLTKTFDSELPRFDLVLLGLGNDGHTASLFPGTTA
                     LLEQHQLVTAPWVEKLNSHRLTMTLPLLNNAATIVFLVSGSEKADILSQVLDGPRAQF
                     PAQLINPVNGQLTWLVDRAAATNLTLQ"
     gene            complement(1453..3189)
                     /locus_tag="VIJ87_05805"
     CDS             complement(1453..3189)
                     /locus_tag="VIJ87_05805"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEY5443977.1"
                     /translation="MKLTSAHHEAASDEASTAKQDASLRRIIESSLIGLACIDVAGVF
                     RHVDDAFLRTVGYSRKDLPAKLSDLTPPEHQRLDEDAFEKLAAFGACTPFEKELIRAD
                     GSRVPVLFGAAVNEDEISCFIIDLSQNKQAQGKLNHLAYHDALTDLPNQSLFKDRLKQ
                     AIALSHRSNQMQAVLLLNLDRFKTVNDSLGYLAGDLLLQSVAQRLTSCVRDCDTVARF
                     GSDEFAILLTEVSRAQDAATTARAIKDTLDQPFIFEEQEIFVSNSIGISLYPHDGRDT
                     ATLLKSAGVALDRAKEQGGNNYQFYTAGGTTRSLRQLVLESNLRPGLERNEFFVQYQP
                     QVSNNDFHLVGMEALVRWQHPGLGLLYPKEFIQLAEESGLIITLGDWVFRNACRQNKA
                     WQDAGLAPMRLAVNCSARQFQQETFISGVEEILKETNLDPSWLEIEITESSIMKDPEK
                     AIEKLLELKMMGIKVAIDDFGTGYSSLNYLKRFPIDTLKIDRSFVSDLCKDPHDTAIV
                     RAIITLGHALDLTVIAEGVETRDQLESLNELECDVVQGFLFSKALSSDDFEELLIEQR
                     QVSSSFSMLVSL"
     gene            complement(3481..>3976)
                     /locus_tag="VIJ87_05810"
     CDS             complement(3481..>3976)
                     /locus_tag="VIJ87_05810"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEY5443978.1"
                     /translation="IAKWQFVDPTRIGIWGWSGGASSTLNAMFRYPDVYAVGMSVAPV
                     PDIHYYDSIYQERYCGLPQDHPDEWKQSSPVTFAGQLKGKLLVVHGTGDDNVHYQGTE
                     ALINALVASNKQFSMMSYPNRSHGIYEGPGTTRHLFGLLTRYLMDKLPAGAAMTSSSA
                     AAVR"
BASE COUNT         1005 a         1033 c         1004 g          934 t
ORIGIN      
        1 cgttcgcacc ggcaaacgac tcggcagaag cgttacagag atcgcgatac acctgaagcg
       61 cactccacag gcattgtttg ctcgaacacc agacgaacag atcgaaccca acgtaatcgt
      121 tttgcgaatt caaccgaacg agggaattat tgtttcgttc ggggcaaaac atcccgggtt
      181 tgaaatgcga accaacgttg tacacatgga tttctgttac gagagcggat ttggagtgcg
      241 ctcgcccgac gcgtacgaaa cgcttttgct cgatgcgatg cagggcgacg cgacgctgtt
      301 tacgaggaac gatgaagttg aagcgcaatg gagactgata acgccgatcg aggaggcatg
      361 ggctacgcaa ggcgagactg tcttcacgac ttaccctgct ggcagcgatg gcccgccaga
      421 agccgatgaa atgctggcga ggaatgggca ccgctggcgc aagctgaaag agacttttgc
      481 cggctgcgac taagcgtgtg gcacagactt cagtctgtgt actgagaaca ggaagccggg
      541 caacaaagaa tcattggtca tatatcatct gacatttctc agtttgtcat tttgaaaagc
      601 agtgaaacct tcgattgaaa ttttgggcga cccggagcag ttggctcgtg ccgctgctca
      661 aagaattgtc gtgcatagca aagcggcggt gtcgaagaat ggcactgtca caattgctct
      721 gtcaggtggt tccacgccta aacgtctata tgaactcctg gcaaacgctg acgaagaatt
      781 cttttcacag atatcgtggg atcaagtgca attcttctgg actgacgaac gacacgtggg
      841 ccctgatcat ccggacagca actatcgaat ggtcaatgaa gcaatgcttt ctaaagtgcc
      901 gatcgagagt gcgcaagtac atcgaatgtt aggtgagcta accgatccaa atgaagctgc
      961 acacaggtac gactctctgc taacgaaaac ttttgactct gaacttcctc gttttgattt
     1021 ggtgttgttg ggcctgggaa acgacggaca tacagcgtcg ctcttccccg gcacaacagc
     1081 attgctggaa cagcatcaac tggtaaccgc gccgtgggtc gagaaactaa atagtcatag
     1141 actcacaatg accctgccgc tattgaacaa cgctgccacg atcgtctttc tggtcagtgg
     1201 ctcggagaag gctgacattc tctcgcaggt gctcgatggc ccaagggcac agttccccgc
     1261 ccaactaatt aatccagtca acggtcaact aacttggtta gtcgatcgcg ccgccgccac
     1321 aaatctgaca cttcagtgat ggctcaaatg tccgatatgc ctttagcttg ttgggttgca
     1381 gtaaagaatg agcgctgcgg taaaaaagga tagaaaaacg acaagctaaa gcttatcgga
     1441 catttgaggt tactaaaggg aaacgagcat tgaaaaactt gaactaacct gccgctgctc
     1501 gatcagcaac tcttcgaagt catcacttga gagcgctttg ctaaatagaa aaccttgaac
     1561 gacgtcgcac tccaactcat ttagtgattc caattgatct cgtgtctcga cgccttctgc
     1621 gatgacagtc agatccagcg catgtcccaa cgtgataatc gctctcacaa ttgcggtgtc
     1681 gtgtggatct ttacataggt cactgacgaa ggatcgatca atcttcagcg tatcgatcgg
     1741 aaatcgtttc agatagttga gcgatgaata gccggtccca aaatcgtcaa tcgcgacttt
     1801 gatccccatc atcttcaact cgagtaactt ttcaatcgcc ttctccgggt ctttcatgat
     1861 tgagctttcg gtaatctcga tctctaacca gctgggatcc agatttgtct cttttaatat
     1921 ttcttcgaca ccggagataa aagtctcctg ctgaaactga cgtgcggagc agttaactgc
     1981 cagcctcatc ggcgcaagtc ccgcatcctg ccacgccttg ttctgacgac aggcatttcg
     2041 gaaaacccaa tcaccgagcg taatgatcag gccactctct tcagcgagct gaataaattc
     2101 ttttggatac aggagtccca accctggatg ttgccagcgt acgagtgcct ccatacccac
     2161 caaatgaaag tcgttattac tcacctgcgg ttggtactgc acgaagaact cattgcgctc
     2221 caggcccgga cgaagattac tttccaagac gagctgccgc agcgatcgcg tcgtgccacc
     2281 agcggtatag aattgataat tgttccctcc ctgctccttg gctcgatcaa gagcaacccc
     2341 cgcgcttttt agcagcgtgg cggtatcacg gccgtcgtgc ggatacagac tgatgccgat
     2401 gctgttggaa acaaagatct cctgttcttc aaagataaac ggctgatcca gagtgtcctt
     2461 aattgctcgg gccgtcgtag cggcgtcctg ggctcgcgaa acctcggtga gcaaaatcgc
     2521 aaactcgtcg ctaccaaacc gtgcaaccgt atcgcaatcg cgaacgcaac tcgtcaaacg
     2581 ttgggcgact gactgtagaa gcaggtctcc ggcgagataa ccaagtgagt cgtttaccgt
     2641 cttgaatcga tcaagattca gcaataacac tgcctgcatt tgattgctgc ggtgtgagag
     2701 cgcaattgcc tgtttcagtc gatctttgaa taaagattgg ttaggcagat ccgtcaacgc
     2761 atcgtgatag gcgaggtggt tcagcttacc ctgggcctgt ttgttctgag acaggtcgat
     2821 aataaagcaa ctgatctcat cctcgttaac tgcggcgcca aacaagaccg gcacccgact
     2881 tccgtcagcg cgtatgagtt ccttctcgaa aggcgtgcag gcgccaaacg ccgcaagctt
     2941 ctcaaacgca tcttcatcga gcctctgatg ttcaggcggt gtcaggtcgc tgagtttggc
     3001 tggcaggtct ttacgtgaat agcccacagt ccgcagaaag gcgtcgtcga catgacgaaa
     3061 cacccctgcc acgtcgatac aggcaagacc aattaagctc gactcgatga tccggcgcag
     3121 actggcatct tgcttagctg ttgatgcctc gtcagacgcc gcttcgtggt gtgcggacgt
     3181 aagtttcatc ctaagcactt tcgtaaaagg cttatcgaga aacgcgggag gtaaatgttt
     3241 ctgaaaaagt gaagaagggc aggttggccg ttcaacccaa tcgctagcct aacagaacgg
     3301 cgtgagagtt ttcaacgagt ttttggagaa tctaagattc aagggttcgc ggaacaaaga
     3361 acaagtcagg acgcgtggtt ggccccgggc ttcctatcga ctgcttccgg aatagaaaca
     3421 gcaaagagga ccgggccaag tcagcacttc ctgacttgtt ctattttcaa tgcggaatcg
     3481 ttatcgcaca gcagcggcgc tactcgaggt catcgcagca cccgcaggta acttgtccat
     3541 caaatagcgg gtcaacagtc caaacaagtg ccgcgttgtt cctggtcctt cgtaaattcc
     3601 gtgggagcga ttgggatacg acatcatcga aaactgcttg ttggaggcca ccagcgcatt
     3661 gatcaatgcc tcggttccct ggtagtggac gttgtcgtcg ccggtgccat gcaccacgag
     3721 caatttacct ttgagctggc cggcaaatgt taccggcgaa ctctgtttcc attcatccgg
     3781 atggtcctga ggtagcccac aatagcgctc ctgatagata gagtcgtagt aatgaatgtc
     3841 gggtaccggc gccactgaca ttccaactgc atacacatcc gggtagcgga acattgcatt
     3901 tagtgtcgat gaggccccac cgctccaacc ccaaatacct atccgcgttg gatcgacaaa
     3961 ctgccacttt gcaatc
//
LOCUS       DATCGC010000613         1016 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_407652, whole genome shotgun sequence.
ACCESSION   DATCGC010000613 DATCGC010000000
VERSION     DATCGC010000613.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1016)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1016)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1016
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407652"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..983)
                     /locus_tag="VIJ87_05815"
     CDS             complement(<1..983)
                     /locus_tag="VIJ87_05815"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY5443979.1"
                     /translation="MIIGFVIVGAALFAKAIPTGFIPDEDQGIFGVNVQLPPGASLAR
                     TSEVLKQVEDILAKTEGVESYQTVGGYGVVTNTYQPNYGTIFARLKPWEERHGEALHV
                     KGIMGGLQKQFTNIPEGIIFPFNIPTLAGFGAAAGFNFLVQDRTGTMTIEELGEHTSK
                     FIAAGRQRPELGTLFTSFDPNYPQVKVSLDREKARTLGVPVNEVFQTMSTAMGGAFVN
                     DFNRFGRLYRVYVQAESTDRLKSEDIGRIYARSRTTNSMVPLSTLVSIEDVAGSEITT
                     RFNLLRSVELTGAPGRGYTSGQALAALEEVFAQTMPAEMSFAYSSLSHQEK"
BASE COUNT          239 a          270 c          252 g          255 t
ORIGIN      
        1 atcttctcct ggtgagaaag cgatgagtaa gcgaaactca tttcagcagg cattgtttga
       61 gcaaacactt cctcaagtgc tgcgagtgcc tgacctgacg tatagccgcg cccaggagct
      121 cccgtcagtt ccacggaccg caatagattg aaacgtgtcg tgatctcgct accggcgacg
      181 tcttcaatgc ttaccaacgt cgaaagtgga accatcgagt tcgttgtccg cgagcgagcg
      241 taaatccttc cgatgtcttc cgatttcaat ctgtcggtcg attcagcctg aacataaact
      301 cgatacaagc gtccgaagcg attgaagtcg ttgacaaatg ctccgcccat tgcggtcgac
      361 attgtttgaa agacctcatt cacaggaacg ccaagcgtcc gcgctttttc gcgatcaaga
      421 cttactttga cttgcggata gtttggatcg aatgaggtga agagagttcc aagttcgggc
      481 cgttgccggc cagctgcgat gaacttgctg gtgtgttcgc ccaactcctc aattgtcatc
      541 gttcccgtgc gatcctggac caggaaatta aacccggccg cggcaccaaa gccggcgagc
      601 gtcggaatat taaagggaaa gataatgccc tccggaatat tggtgaactg tttttgtaat
      661 cctcccatga ttcctttgac atgcaatgct tcgccatgac gttcttccca cggcttcaac
      721 cgagcgaaga tggtgccgta atttggctgg tatgtattag taacaacgcc gtagccaccg
      781 actgtttggt acgactcgac tccctctgtt ttcgcgagaa tgtcttcaac ctgcttaagt
      841 acttcgcttg tacgcgcgag cgacgcaccc ggcggcagtt gtacgttgac tccgaagatg
      901 ccctgatctt cgtcaggaat gaatcccgtt ggaattgctt ttgcgaacaa ggctgctcca
      961 acaattacga atccaatgat cacaatggtc agaatcgctc gccggataag cagtcg
//
LOCUS       DATCGC010000614         1000 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_310545, whole genome shotgun sequence.
ACCESSION   DATCGC010000614 DATCGC010000000
VERSION     DATCGC010000614.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1000
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_310545"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..321)
                     /locus_tag="VIJ87_05820"
     CDS             complement(<1..321)
                     /locus_tag="VIJ87_05820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443980.1"
                     /translation="MSELKLQQSRLDGRYDIVECLGRGSYAEIYVANDNAATDGAPRT
                     IVIKALNIFLQDEPDAELERTLVANFQNEAVALDRVRHPNVINRLGHGTAIDLAGTTF
                     HYIVL"
     gene            complement(379..>1000)
                     /locus_tag="VIJ87_05825"
     CDS             complement(379..>1000)
                     /locus_tag="VIJ87_05825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443981.1"
                     /translation="SRIAFPAPASDPQPVVAQEKLNVAAPPSKKGGSSVARFFGFLFV
                     LALIAGAFYAGARFKERIPFLASQTKAAEPPVEVPKPVEEPFVQFERARREVDRDPRA
                     WLASDIGKELLNSGIQKPLESPNPEFLYLYGRANLLTGNADEAASAFEAAIAKVDANA
                     SQTNATIKKEAELGLAAVSLKTLKAREKALLHYDDLTKPPAAQSTP"
BASE COUNT          219 a          254 c          285 g          242 t
ORIGIN      
        1 gagcacgatg tagtgaaacg tagttccagc caggtcgatc gccgttccgt gtccaagtcg
       61 attaatgacg tttggatgtc gaacgcgatc gagcgcaacg gcctcatttt ggaaattggc
      121 aacgagggtg cgttcgagtt cggcgtcggg ttcatcctgg aggaagatgt tcaacgcctt
      181 gatgacgatt gtacgaggcg cgccgtcggt agccgcattg tcgttagcaa cgtagatctc
      241 tgcgtaactc ccacggccaa gacattcgac gatgtcgtac cggccatcga gtctgctctg
      301 ttgaagtttt agttccgaca ttagttcgcc ctgattcaca tccgttagat gctaaaacga
      361 aaagatcagg gaacggtttc aaggggttga ctgggcggca ggaggttttg tcaggtcgtc
      421 ataatgaagc agcgctttct cgcgagcttt tagagttttc aggctcacag ccgccagccc
      481 aagttcagct tctttcttga tggtggcgtt tgtttgcgag gcattggcgt cgactttggc
      541 aattgccgcc tcgaaggcac tcgcggcttc gtccgcatta ccggtcagga gatttgccct
      601 tccatacaag tacaagaact caggatttgg tgactccagt ggcttttgaa tcccggagtt
      661 aagcaattct ttaccgatgt cggatgcgag ccaggcccgc ggatctcgat caacttcacg
      721 tcttgctcgc tcaaactgta caaacggttc ttcaaccggc ttggggacct cgaccggagg
      781 ttcggctgcc tttgtttggc tggcgaggaa cggaattcgt tctttgaagc gagcgcccgc
      841 gtagaacgct ccagcaatca atgccaagac aaacagaaac ccgaagaagc gggctactga
      901 actaccaccc tttttcgagg gcggagcggc cacgttaagt ttctcctgcg caacgacagg
      961 ttgcggatca gatgccgggg cagggaaggc aatacgcgaa
//
LOCUS       DATCGC010000615         1125 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_374440, whole genome shotgun sequence.
ACCESSION   DATCGC010000615 DATCGC010000000
VERSION     DATCGC010000615.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1125
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_374440"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1125
                     /locus_tag="VIJ87_05830"
     rRNA            <1..>1125
                     /locus_tag="VIJ87_05830"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          343 a          230 c          314 g          238 t
ORIGIN      
        1 tagaagtcat tatcaaactg aatcatctgg aaagatgagc aacataaggt gaaagccctg
       61 taggtacaaa ttaatgagga cgagcagtat cctgagtagt gcgggaccgg aggaatcctg
      121 catgaaactg ccagcaccat ctggtaaggc taaatactcc tcagacaccg atagtgaacc
      181 agtaccgtaa gggaaaggtg aaaagtaccc caaacagggg agtgaaatag tacctgaaac
      241 cgtacgccta caagcggtcg gagccccgca gcaatgcgag ggtgacggcg tgccttttgc
      301 ataatgagcc tacgagttac tcctcactgg caaggttaag ttctttagta acggagccgt
      361 agcgaaagcg agtccaaata gggcgattag tcagtggggg tagacgcgaa actttgtgat
      421 ctatccatgg gcaggttgaa ggtgtggtaa cacacactgg aggaccgaac tcatgagcgt
      481 tgaaaagctc tgggatgacc tgtggatagg ggtgaaaggc caatcaaact gagagatagc
      541 tcgttctccc cgaaatgttt ttaggaacag cgtcgcatat agaagtttat tagaggtaga
      601 gctactgatt gggctagggg gcttcaccgc ctaccaaacc ctgacaaact ccgaatgctc
      661 ataaatatct gcagcagtga ggctgtgggc gctaaggtcc atggccgaga gggaaataac
      721 ccagattagc aactaaggtc cctaatacat ggttaagttg atcaaacgag gtgggatttc
      781 tataacagcc aggatgttgg cttggaagca gccactcatt taaagagtgc gtaacagctc
      841 actggtcgag agatcctgca cggaaaataa tcgggcatca aaccatgaac cgaagttcta
      901 agattgccac taggtggtat atcggtaggg gagcattgaa actgcagcga aggtgcacgg
      961 cgacgtgtgc tggagcggtt tcaaaagaaa atgtaggcat aagtaacgat aattaatgtg
     1021 aaaaacatta acgccgtaaa cccaaggttt cctgatcaat gttaatcaga tcagggttag
     1081 tcgggtcctt aggcgcaccc gaaaggggaa gctgatggca agtcg
//
LOCUS       DATCGC010000616         1298 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_242037, whole genome shotgun sequence.
ACCESSION   DATCGC010000616 DATCGC010000000
VERSION     DATCGC010000616.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1298
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_242037"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1015)
                     /locus_tag="VIJ87_05835"
     CDS             complement(<1..1015)
                     /locus_tag="VIJ87_05835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443982.1"
                     /translation="MGVEPEEEFVSDDQLKTLLERWIAPDPSRVLDKRITTSFQREFS
                     GADGLSQSVLLPHRREEVVLMKFCSRCEEEFADKFSFCPVDGNPLTTVAVKDEEPSLT
                     VSREASHEESEPWVQSNGSYSTTPSVDLTPLSATPLVAVNSGSSTPTSSGMALREEYH
                     LTIMDDSGLVARLSHEVKDTAHEYELTWPEFKRDPFGFTKRTFVGYGQMLKKFLGNRN
                     VLLAMGAAVLAMFGLVGAVAAIDRAQSSTKTSRVGLVGFAAVAALLLIALFSTMLGKE
                     RGAAVMGAEPSDSKTVVAGMLVSFLFLFVVMGGVFWMDRKHKQAELIAQNEELQVEQM
                     LDIP"
     gene            complement(1017..>1298)
                     /locus_tag="VIJ87_05840"
     CDS             complement(1017..>1298)
                     /locus_tag="VIJ87_05840"
                     /inference="COORDINATES: protein motif:HMM:NF019886.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor-like helix-turn-helix DNA-binding
                     protein"
                     /protein_id="HEY5443983.1"
                     /translation="RHEPLRLVLDEELTNQVRHAVMTLPPLQREALVLFEYEDLSLSE
                     IADITESDIGAVKGRLFRAREGLKRMLRPYLNANSELNSRREIVTLREA"
BASE COUNT          330 a          372 c          287 g          309 t
ORIGIN      
        1 tagggatgtc gagcatctgc tcaacctgaa gttcttcgtt ctgcgcgatc aactcagcct
       61 gtttgtgttt gcgatccatc caaaagaccc cgcccattac cacaaacagg aacaagaacg
      121 acaccaacat tccagcaacg actgttttcg agtctgaagg ctcagcaccc atcactgcgg
      181 cgccacgctc cttaccaagc atcgttgaaa agagtgcgat tagaagaagt gccgcaacag
      241 cagcaaatcc aactaagcca acgcgcgacg tcttggttga tgattgcgcg cgatcgatgg
      301 ctgcgacagc gccaacgaga ccaaacattg cgagaacagc ggcgcccatt gcaagcaaga
      361 cgttgcggtt tcccagaaac ttcttgagca tctggccata gccaacaaat gttctctttg
      421 tgaatccaaa cggatcacgc ttgaactcgg gccaggtcaa ttcatattcg tgagctgtat
      481 ctttaacttc gtgggacaaa cgagcaacga gcccagaatc gtccatgatc gtgaggtgat
      541 actcttcgcg caacgccatg ccagaactcg tgggtgttga actcccggaa ttcacagcga
      601 ccagcggcgt cgctgagagt ggcgtaagat caacgctcgg tgtagtggag tacgagccat
      661 tactttgtac ccatggctct gattcttcgt ggctggcttc cctgctaacc gtcaaactcg
      721 gttcctcatc tttgacagca accgttgtta atggattacc gtccaccgga cagaaactga
      781 acttgtcggc aaactcttct tcgcatctgc tgcagaactt catcaatact acctcttctc
      841 gcctatgggg gagcagcact gactgagaca gcccgtctgc gcctgaaaat tctctttgaa
      901 agctcgttgt aatacgcttg tcgagaactc tcgaagggtc tggcgcaatc cagcgttcga
      961 gcagcgtctt gagctgatca tctgaaacaa actcttcttc aggctcaacg cccatcttac
     1021 gcctccctca aagtaacaat ttcccgacga ctattcaatt cagaattcgc gttcaaatag
     1081 ggcctcaaca tccgcttaag accctctctt gctctgaaaa gccgaccctt aactgctcca
     1141 atatccgatt cagtgatatc ggcaatctca ctcaagctca aatcctcata ttcaaacaga
     1201 accaatgctt ctcgttgaag cggcggcaaa gtcattacag cgtgtcggac ttgattcgtc
     1261 agttcttcat ccaacaccag acgcagcggc tcgtgtct
//
LOCUS       DATCGC010000617         4231 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_475814, whole genome shotgun sequence.
ACCESSION   DATCGC010000617 DATCGC010000000
VERSION     DATCGC010000617.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4231)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4231)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4231
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_475814"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..574)
                     /locus_tag="VIJ87_05845"
     CDS             complement(<1..574)
                     /locus_tag="VIJ87_05845"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HEY5443984.1"
                     /translation="MHSLRDIVESSPQLRGIETKATFELEGVDVPQPLAHARWDWEQV
                     RKILVIRLRSIGDTVLATPSLFALKRFLPNAEVDILVEDWVAPVLDEHPHVNKVITIK
                     RDSLTARARVARQIRAARYDVVYNLHGGTTATLLTRATGARHRVGYSSYQYSNLHNHQ
                     SPSSSALWKQPKTHSAEQQMALLGWTGIPVS"
     gene            complement(567..749)
                     /locus_tag="VIJ87_05850"
     CDS             complement(567..749)
                     /locus_tag="VIJ87_05850"
                     /inference="COORDINATES: protein motif:HMM:NF015899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HEY5443985.1"
                     /translation="MAISQELLEILACPACKAKVELVSEGNALKCVECKRVYPIRDDI
                     PVMLVDEATIEESTDA"
     gene            complement(960..2342)
                     /locus_tag="VIJ87_05855"
     CDS             complement(960..2342)
                     /locus_tag="VIJ87_05855"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEY5443986.1"
                     /translation="MSSKPQSRTYPPGPRRGLPFSGLLAYRRGPLPYFQNLANRYGDI
                     SFFRIGPQEAFFINHPDLIKDVLVTNNQNFMKGLVLQRAKRLLGEGLLTSEGEFHRRQ
                     RRLAQPAFHWQRIASYADVMVDYAARTSERWLDGAKLDLSVEMMRLTLGVVGKTIFDA
                     DVESESGEVGEAMTVVMELFDTLTLPFFELLSKLPLPQLRRFDAARAKLDRIIFSLVE
                     DRRRSGVDRGDLLSMLLLAQDEEGDGGQMTDQQLRDELMTIFLAGHETTANALTWTWY
                     LLSNHPEVETRLHQELDEVLGSRKPEFADVAQLRYTEMVVAESMRLFPPAWAIGRLST
                     VDCEVGGYFVPQKSLVIASQYVMHRDERYYKSPLAFDPERWTPEARESRPQFAYFPFG
                     GGPRRCIGEGFAWMEAILLLATLAQKWKLRLVPHHPVAMKPVVTLRPKHGMKMTITRR
                     QGNEVSTTAP"
     gene            2543..3304
                     /locus_tag="VIJ87_05860"
     CDS             2543..3304
                     /locus_tag="VIJ87_05860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443987.1"
                     /translation="MSLEFALQYSCPLRANYSEKHLREWGRLSSLHAKLTTGDVSVPS
                     VDKLQWVENARNEIERMQEATEICAQCPACLPPDIAGEGEAVGCLGRINYPIEAQFEK
                     FLADRVQLLLDTLDKEDQPRLLRILVDPESPFDGEATKELRRVITDEGLRFFELRVPI
                     SLSREATRLSTDNIFDLLAGFRSEDSDQTTYTREFPFEAVPDYYDFLDLVLRSELSQS
                     ELARLTARSRNYQQFLRLLTAIEKAEALGARVLID"
     gene            complement(3312..4022)
                     /locus_tag="VIJ87_05865"
     CDS             complement(3312..4022)
                     /locus_tag="VIJ87_05865"
                     /inference="COORDINATES: protein motif:HMM:NF025690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4388 domain-containing protein"
                     /protein_id="HEY5443988.1"
                     /translation="MATTDSRTEHVTEIEAALLDAELFVKYKATEKAIKRLRTAIERN
                     SRSLQLRERLREICIPTHTEEAARQCLALASLYIEREDFDTAHDRLLEAKQLDERINI
                     ASGLEAIRRARRPDLKPQPAAEANFERRHFTLAGDLSAISVFDVIQVIENAKLNGRLT
                     ISGNINEGFVMFNDGRIVDAECAGDKADLGFQRVVEITSGTFEFQKSSEQFPIKIQAL
                     SNTNLLLDTLRLLDEKKQ"
BASE COUNT          947 a         1091 c         1133 g         1060 t
ORIGIN      
        1 cggagactgg aattcccgtc caaccgagca gggccatttg ttgctcggcc gagtgagtct
       61 tcggttgctt ccataacgcc gaagaagaag gcgattggtg attgtgcagg tttgaatact
      121 ggtaacttga atagccaact cgatgacgtg cgccggttgc tcgagtcaag agggttgctg
      181 tcgttccgcc gtgcaggttg tagacgacgt catatcgcgc ggcgcgaatt tgccgggcca
      241 cacgcgcgcg cgcagtcagg ctgtcgcgct taatcgtgat cactttgtta acgtgcggat
      301 gttcgtccag cacaggcgcg acccagtctt cgacgagaat atcgacttca gcatttggta
      361 aaaaacgctt caacgcaaac agtgatggcg tggccaggac tgtatcgccg atggatcgta
      421 gtcggatgac caggattttt cttacttgct cccagtccca gcgtgcgtgc gcgagtggct
      481 gaggtacatc aacgccttcc aactcgaaag tcgctttagt ttctatgccg cggagttgcg
      541 gggacgactc aactatgtcg cgcaagctat gcatcggtcg attcttcaat cgtcgcttcg
      601 tcgacgagca tcaccgggat gtcgtcgcga ataggataaa cgcgcttaca ttcgacgcac
      661 ttcaaagcat tgccttcgga cacgagctct accttcgcct tgcatgccgg gcacgcaagt
      721 atttctaaga gttcttgact gattgccatg gattaccttt ctgcgtttct cgtgcgggat
      781 ttgtggaaag attagcatag gctgttcgat atgctttaac ttgtcgatgc ccatacctaa
      841 tccacagatt ccgcaatgct ccagagcgca acctagtatc tacgaagtca gtaccacagc
      901 gcggtagcgt gtggctcttt actgaaaata aacatttcgc gaaattcagc agccacaagc
      961 tacggcgctg tggtactgac ttcattgcct tggcgacgag tgatcgtcat tttcatcccg
     1021 tgtttgggtc ggagcgtgac gaccggtttc atggcaaccg gatgatgcgg aactaatcgg
     1081 agtttccact tttgcgcgag cgtggcaagc aagagaattg cttccatcca cgcgaaccct
     1141 tcaccaatac atcgtcgcgg cccaccacca aaagggaagt aggcaaactg gggccgtgac
     1201 tcacgtgctt cgggcgtcca acgctctgga tcgaatgcga gtggactctt gtagtaacgt
     1261 tcgtcgcgat gcattacgta ctggctcgcg attactagtg atttttgggg aacgaagtaa
     1321 ccacccactt cgcagtcaac tgttgacagc cgtcctattg cccatgcagg tgggaaaagt
     1381 ctcatcgatt cggccactac catttcggtg tatcgcagtt gcgcaacgtc ggcgaactcg
     1441 ggtttccgtg aaccgagaac ctcatcgagt tcctgatgaa gccgggtctc gacttcagga
     1501 tggttcgaca agagatacca tgtccaggtt aaggcgtttg ctgtcgtctc gtgcccggcg
     1561 agaaagatcg tcatcagttc gtcgcggagc tgctggtcgg tcatctgtcc gccgtcacct
     1621 tcttcgtcct gcgcgagcaa taacatcgac aacaagtccc ccctatcgac tccactgcga
     1681 cgtcggtctt caaccaaact aaagataatg cgatccagct tggctctggc tgcatcgaag
     1741 cggcgcagtt gaggaagcgg caacttcgac agtagttcga aaaatggaag cgtcaaagtg
     1801 tcgaacagtt ccatgacaac agtcattgct tcgccgactt cacccgattc agattcaaca
     1861 tccgcatcga aaatcgtttt tccgacgacc ccgagagtaa gtcgcatcat ttcaaccgag
     1921 aggtctagct tggctccatc gagccaacgc tcgctggtcc gcgctgcgta gtcgaccatc
     1981 acgtccgcat aagaagcaat gcgttgccag tgaaatgctg gttgtgctag tcgtcgctgg
     2041 cggcgatgaa attcgccttc gcttgttagc aatccttcgc cgagtaatct tttggcgcgt
     2101 tgcagaacca ggcccttcat gaagttctga ttgttggtaa ccagaacgtc tttgatcagg
     2161 tcaggatgat ttatgaagaa agcttcctga ggaccgatgc ggaagaaaga gatgtcgcca
     2221 tagcggttgg cgagattttg aaagtaaggc agaggtcctc gtcgataggc aagcaaacca
     2281 ctgaagggta gcccgcgtcg tggaccgggc gggtaagtac gagattgagg tttcgaagac
     2341 atgctgtccg atatgcgtct gtcttgtcgt ggtcttagaa gaccttcccg tggggtcacc
     2401 gttgccctga ggatcacagt ctaatcgtaa cgacaaggtg aagcatatcg gacatctgcc
     2461 catttgcccg ttgactctgc gtgtgttagt gcttaagaag cacaaagcac aaagcacaaa
     2521 gtcccaagat ccactattct ccatgtcact cgaattcgca ctccagtact cttgcccttt
     2581 gcgcgctaac tattctgaga aacacttgcg cgaatgggga cgtctcagca gtttgcacgc
     2641 caagttaacg acgggcgacg tcagcgttcc gtcggtcgac aaactccaat gggtggaaaa
     2701 tgcgcgcaat gagattgaga ggatgcagga agcgactgaa atctgcgctc aatgtcctgc
     2761 ttgtttgcct ccagatatcg ccggcgaagg ggaggcggtt ggctgtttgg gaagaatcaa
     2821 ttatccgatt gaggcgcagt ttgaaaagtt tcttgcagat cgagttcagc tgttgctcga
     2881 cacactcgac aaggaagatc agcctcggtt gttgcgcatc ctggtagatc cggaatcacc
     2941 gtttgatgga gaggctacca aagaacttcg acgcgtaatc accgacgagg gtttgcgttt
     3001 cttcgaactg cgcgtaccga tctctttgtc acgcgaagcg actcgcttga gtaccgataa
     3061 cattttcgac ctcctggcag ggtttcgttc agaagatagt gatcagacga cctacacgcg
     3121 cgagtttccc ttcgaggcgg tgcctgacta ttacgacttc cttgatcttg tactgcggag
     3181 tgaactcagc cagtcagaac ttgcgcgact aaccgcacgc agccggaact accagcagtt
     3241 tctgagattg ttaactgcaa tcgagaaggc agaagcgctg ggtgcgagag tgctgattga
     3301 ttagagctcg actactgctt cttctcatcc aacagccgca aggtgtcgag caagaggttg
     3361 gtgttgctga gtgcctggat cttgatcgga aactgttctg aggacttttg aaactcaaat
     3421 gtgccgctgg taatttcaac cacgcgttga aaaccaaggt ctgccttatc gccagcgcat
     3481 tcagcatcga caatccgtcc atcattgaac atcacgaagc cttcattgat attgccgcta
     3541 atagtcaaac gtccattcag tttcgcgttc tcaattacct gaataacgtc gaacacgcta
     3601 attgcgctga ggtcgcctgc gagcgtgaaa tgtctacgct caaaattcgc ttcggctgcc
     3661 ggttgcggtt ttagatctgg tcgccttgcc cgacgtatcg cctccaagcc gctcgcgatg
     3721 ttgattcgtt cgtccagttg cttcgcttct agcagacgat cgtgagcggt gtcgaagtct
     3781 tcgcgctcga tgtagaggct cgccaaggca agacactgac gcgccgcctc ctcggtatgc
     3841 gttggaatgc aaatttcccg aaggcgttca cgtagttgta aggaacgcga gtttcgctcg
     3901 atagccgtcc ggagtcgttt gatcgccttt tccgtagcct tgtatttcac aaacagttcg
     3961 gcgtcgagga gtgcggcctc gatttcggtg acgtgttctg ttcgggagtc tgtggtggcc
     4021 ataggttcta acgggagcaa ccaacaatga gtttagcaca ggacttttta tgcttccgag
     4081 gctcatgttc gagaatcttt tgacgtgttg atcttcgacg gcgatctgtc ttctggatac
     4141 gtcttgtgtc gattattggc gactccatat cgagtctcaa ctaaccaaat cgtgtgcgtc
     4201 gagcaccgag tccttgtttg tagccggtcg g
//
LOCUS       DATCGC010000618         2057 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_475817, whole genome shotgun sequence.
ACCESSION   DATCGC010000618 DATCGC010000000
VERSION     DATCGC010000618.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2057)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2057)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2057
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_475817"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..408
                     /locus_tag="VIJ87_05870"
     CDS             <1..408
                     /locus_tag="VIJ87_05870"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY5443989.1"
                     /translation="PAMIEICRERFPDSEWHLVDMRELHFDRRFEGILAWDSFFHLGT
                     DDQRKMFPRFAAHAQSGAPLMFTSGPAEGEAIGVYCDEPLYHASLGPAEYEQLLSTNG
                     FAVRAYTAEDPQCGGHTVWLTTYDREPRGLTDR"
     gene            881..>2057
                     /locus_tag="VIJ87_05875"
     CDS             881..>2057
                     /locus_tag="VIJ87_05875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443990.1"
                     /translation="MRLRPGFLSFALYLTLSPAPLSPPRAFAQSGKVVPAATSKPTPT
                     PETAAPNQPETKRRVVIESADTYKLVFPTSPSVDNFGEQLNKAGVDRYKLTSAVFTNK
                     RKSTPPKDVYSFPVAILKLDEVQHEYAWFKTTSTSLVAVEGFEQKYRGLSQQGFRLVD
                     QFITRAFCDDGYPLGMVFGGACEIDQLFLLERRRGVEKPIEFILADSPPRPGFRTKMA
                     TELTAQVKEKLADGFYPTAVFSAWEMLLTHAENSDDLTDNPDVRVVTSFDVRGRVNDL
                     AKQGYRLVLINKRAAVMYRRGPMATPLTYISLKVSDKRFDEQLAKLQESGASYRMTYT
                     GDSGVEDQLMFEQGPAADGQRYEYKVLDFEFQVAEDLAPRQGAQQEVCIDLTASSKET
                     "
BASE COUNT          490 a          551 c          568 g          448 t
ORIGIN      
        1 ccggccatga tcgagatctg ccgtgaacgc tttccggatt ccgagtggca tctggtggac
       61 atgcgtgagc tccacttcga ccgacgcttc gagggcatcc tggcatggga tagtttcttc
      121 catctgggta cagacgatca gcgcaaaatg tttccgcggt ttgccgcgca tgcacaatcg
      181 ggtgcaccct tgatgttcac gagcggcccc gcggaaggtg aagcaatcgg tgtctactgc
      241 gacgagccgc tctaccacgc gagcctcgga cctgcggagt acgagcaact gctatcaacg
      301 aatgggttcg cggtcagagc gtacactgcg gaagaccctc aatgcggtgg gcatacagtg
      361 tggctcacaa cctacgaccg cgaaccacgc ggtctaacgg accgatgaag ctcacgagcg
      421 tcttaggcgt ctgccgcttt catagtcgtg tcgcgagttg atgcgcgacg ttgaccgctc
      481 gcgcttggcg agccaaaggg gccgaacctg actggttgaa aagtcgttcc gggacgctaa
      541 aggaattcac aaaaccagaa cgaactggtc aacgaggaat taaacccgtc gaccgcacgt
      601 gctcttcctg aatacctcga gcccgtaccg agtgtaaccg aggatacgac tcgcgcattt
      661 gagccgatca acagcgagcg aaaataaaga tgaagaattg ccgtttaagc cacgccgcgc
      721 ataacaaatc gttggggcgc gagcggcggg agcattgttg ggacatctca ttgaacattt
      781 attgagacat tcttgaggac taattcggtc ctcttcctcc aagctacctc taatagaatt
      841 caagtcagtt tcaactggcg cttagcttcg aggcacaacc atgagactcc gacccggttt
      901 cctttccttc gctctttatt tgactctttc tccggctcca ctttctccac caagggcttt
      961 tgcacaatcg ggcaaggtcg ttccagcggc aacatcaaaa ccaacgccaa ctccggaaac
     1021 tgcggcacca aatcagcctg agaccaagcg gagggtcgtt attgagagcg ccgacaccta
     1081 taaactcgtt tttccgacat ctccgagtgt tgataatttc ggcgagcagc tcaacaaggc
     1141 gggtgtagat cgctacaagc tcacctcagc ggtcttcact aacaaacgca aatccacccc
     1201 acccaaagac gtctattctt ttccagttgc gattctcaag ctcgatgagg ttcagcacga
     1261 atacgcctgg tttaagacaa cgagtacctc cctggtcgcc gtcgagggtt ttgagcagaa
     1321 gtaccgggga ctgtcgcagc aagggtttcg tctggttgac cagttcatta cccgcgcttt
     1381 ctgtgacgat ggatatcctc tgggaatggt tttcggtgga gcttgcgaga tcgatcagct
     1441 gtttctactc gagcgacgga ggggtgtcga gaagccaata gaattcatac ttgcggacag
     1501 ccctccccgt cccgggttta gaacaaagat ggccactgaa ctaacggcgc aggtcaagga
     1561 aaagctggcc gacggtttct atccaactgc agtgttctcc gcttgggaga tgttgcttac
     1621 acacgcggag aatagcgatg acttgaccga caatccagac gtacgggtcg tcacgtcttt
     1681 tgacgtcagg gggagagtta acgacctggc gaagcagggt taccggttgg tattgatcaa
     1741 caaacgcgcg gcggtgatgt accggcgtgg gccaatggcc acgccgttga cgtacatctc
     1801 gttgaaagtg tcggacaagc gtttcgatga gcagctggcg aagctgcagg aaagcggcgc
     1861 cagctatcga atgacttaca ctggtgatag tggcgtcgaa gatcagctaa tgtttgaaca
     1921 aggcccggcc gctgacggcc agcgatacga atacaaggtg ttggatttcg agtttcaagt
     1981 tgctgaagac ctggcaccca ggcaaggtgc gcagcaggag gtgtgtatcg acctcacagc
     2041 gtcgtcaaaa gaaacaa
//
LOCUS       DATCGC010000619         1655 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_407801, whole genome shotgun sequence.
ACCESSION   DATCGC010000619 DATCGC010000000
VERSION     DATCGC010000619.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1655)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1655)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1655
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407801"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(21..803)
                     /locus_tag="VIJ87_05880"
     CDS             complement(21..803)
                     /locus_tag="VIJ87_05880"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HEY5443991.1"
                     /translation="MTALSGTQIEQFNRNGYLLCEQLFDAEEMSLLISIAKNDQRLEQ
                     EALVRRDASANTTKLWLTDALEDDIYSAFVRCHRIVNSMEQLLGGEVYQYHHKMMLKE
                     SFVGGSWEWHQDYGYWYNNECLFPLMASCLIAIDRATKENGCLQVIKGSHHMGRIDHG
                     KKGDQTGADMERVNLALNHLELVHCEMEPGTALFFHSNLLHRSDANRSPNPRWSLICS
                     YNAARNPCRGRQNHPSYQYLEKWPDSRIKEIGRRQLETIASR"
     gene            complement(818..>1655)
                     /locus_tag="VIJ87_05885"
     CDS             complement(818..>1655)
                     /locus_tag="VIJ87_05885"
                     /inference="COORDINATES: protein motif:HMM:NF044745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443992.1"
                     /translation="TSEKMRRHCLIMENCCYDYSETMVLNMIRGGLLGELVHGECAYN
                     HDLRGILFENANEGLWRRRHHTLRDSNLYPTHGLGPMAQYMNINRGDKFEYLISMSSS
                     HLGLEAYRKEHVPPDDPKWKESYKCGDYNTSLIKTAKGRTIMLQHNVSTPRPYDRINL
                     IQGTKGIFRAYPPRIFIDEQEGGHNWATMDKYKEQYESDLWKKEGETARKLGGHGGMD
                     YLMCYRLIQCIREGLEPDINVYDAAAWSVPGPLSERSVATGSMPVKVPDFTRGLWQKS
                     SS"
BASE COUNT          366 a          429 c          409 g          451 t
ORIGIN      
        1 tggtccgtaa cgtaatgctc ttaacggctg gcaatcgttt ccaactgacg gcgtccgatc
       61 tccttgattc tcgaatctgg ccacttctct aaatactggt aacttggatg gttttgtctc
      121 ccgcggcagg ggttgcgcgc agcattgtag ctacagatta gtgaccagcg aggatttgga
      181 ctcctgttcg cgtccgaacg atgtagaaga ttactgtgga agaatagtgc tgtccccggt
      241 tccatctcac aatggaccag ctccaagtgg ttgagggcca gattcacacg ttccatgtcc
      301 gctccggttt ggtcaccctt tttgccgtga tcgatacgac ccatgtgatg agatcctttg
      361 atcacttgca aacagccgtt ttccttcgtg gctctatcaa ttgcaatcag gcagctcgcc
      421 attaaaggaa atagacattc gttgttgtac caataaccat aatcctgatg ccattcccac
      481 gagccaccta cgaaagattc cttgagcatc attttgtgat ggtattggta gacctctccg
      541 cccagtaact gctccatgga attaacgatt cgatgacagc gaacaaacgc gctgtagatg
      601 tcgtcctcga gagcatcagt aagccaaagc ttggtagtgt tggcacttgc atcgcgacgc
      661 accagtgctt cttgttccaa ccgttggtcg ttctttgcga tgcttataag gagtgacatc
      721 tcctcagcat caaacagctg ctcgcatagt agatagccat tgcgattgaa ctgttcgatt
      781 tgggtgccgc ttagcgctgt catgaggccg cctgattcta agaggatgat ttctgccaga
      841 gaccgcgagt aaagtcgggt acttttacag gcatgctgcc agtagcgaca gaacgttcac
      901 tcagtggccc cggtacgctc cacgcagctg cgtcataaac attgatgtcc ggttcgagtc
      961 cctcgcgtat gcactgtatc agtcggtagc acatcagata gtccattccg ccatgtccgc
     1021 ctaactttcg cgctgtctca ccctccttct tccaaagatc ggactcatac tgctctttgt
     1081 atttgtccat ggtggcccaa ttatgtccgc cttcttgttc gtcgatgaag atgcgcggag
     1141 ggtaggcacg aaagattccc ttggtcccct gaataagatt gatgcggtcg taaggtcgcg
     1201 gcgtactaac gttgtgctgc agcatgatcg tacgcccttt ggcggtctta atgagactag
     1261 tgttgtagtc gccacacttg taactctctt tccatttcgg gtcatcgggc ggtacatgct
     1321 ccttgcgata cgcttccaac ccaagatgag aagaactcat cgagatgagg tactcaaatt
     1381 tgtcccctcg gtttatgttc atatattgag ccatgggacc aagcccatgc gtcgggtaaa
     1441 gattactgtc gcgcaaagtg tggtgtcgac gacgccagag tccctcgttc gcgttttcaa
     1501 acaagatgcc acgtaagtcg tggttataag cacactcgcc atgtacgagt tcgccgagca
     1561 gaccgccgcg tatcatgttg aggaccattg tctcggaata gtcgtaacag cagttttcca
     1621 tgatgaggca atggcgtcgc atcttttcgg aagtg
//
LOCUS       DATCGC010000620         1207 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_310822, whole genome shotgun sequence.
ACCESSION   DATCGC010000620 DATCGC010000000
VERSION     DATCGC010000620.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1207)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1207)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1207
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_310822"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..684)
                     /locus_tag="VIJ87_05890"
     CDS             complement(<1..684)
                     /locus_tag="VIJ87_05890"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: protein motif:HMM:NF012585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HEY5443993.1"
                     /translation="MNTPTLGETRFSSKRTHCVNDSLRVPERIEIGADPGHQFEVAGP
                     RAKLFFEAKKTRAGIVTCGGLCPGLNNVIRSLFLELYYGYGVTDVLGFRGGYKGLDPD
                     CGVEPVPITPRFVDGIHQRGGTILGSSRGPVDVCRAVDNLIARNINILFTVGGDGTQR
                     GANDFYQEARRRGHPLSVVGVPKTIDNDVGFVSRTFGFFSAVEEAKRVLDCAHTEARS
                     VIGGIGLVKL"
     gene            870..>1207
                     /locus_tag="VIJ87_05895"
     CDS             870..>1207
                     /locus_tag="VIJ87_05895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443994.1"
                     /translation="MKSARSSIVGLFLIICGLVVATPNQSFAAHRSNDLGRLIIKRSP
                     VLGVNVSVVIYIDGRVAGTSVRARTFDEYIAPGRHVIVASPNQLRGDWHGVLDVRPGH
                     TYMYVMTYNQ"
BASE COUNT          312 a          307 c          299 g          289 t
ORIGIN      
        1 caatttaacc agaccgatcc ctccgatcac actccgcgcc tctgtatgtg cgcaatcgag
       61 gactcgctta gcttcttcga cagcgctgaa gaatccgaag gttcgagaga caaatcccac
      121 atcattgtcg attgtcttcg gaacaccgac aacagagagg ggatgtccgc gtcgtcgtgc
      181 ttcttgatag aaatcattcg caccgcgctg ggtaccgtca cctccgacgg taaagaggat
      241 attaatatta cgggcgatca aattgtcgac cgcccggcag acatctacgg gcccgcggga
      301 tgaaccaaga atggtccctc ctctttgatg aatcccatcg acaaatcgag gagtgatcgg
      361 aaccggttct accccacaat caggatcgag tcctttgtag ccaccacgga atccgagaac
      421 atcggttacg ccatagccgt aatacaattc gagaaaaagt gatcgaataa cgttgttcaa
      481 tccgggacag agtcctccgc aggtcacaat gccggcccga gttttctttg cttcaaagaa
      541 caatttcgca cgggggccgg ccacctcgaa ttgatgtccg ggatcagcac cgatttcgat
      601 tcgttctgga actcggagag aatcgttaac gcaatgagta cgttttgaac taaaacgggt
      661 ttctccgagt gtgggtgtgt tcatctagaa agaacaatag caatgttcgt cagctttcca
      721 ctgaagaacc gagtcagatc tatgaaattc attctcggta acgtctttca gcaggagcgg
      781 agaagaccat cggaccttag tcctaccgca ttcgcgtcac tggaggaaat gggtaaggtg
      841 aactgcaaga attaaacatt cattacatta tgaaatcagc gcgttcttca attgtcggac
      901 tattcctaat catctgcgga ttggttgtcg caactccgaa tcagagtttt gcggcccatc
      961 ggagtaatga cctcggacgg cttatcatca agagatcgcc ggtcttaggg gttaacgttt
     1021 ctgtagttat ttatattgat ggtcgagttg caggcacatc cgtgcgagcc cggacattcg
     1081 acgaatacat cgcgccgggg cgccacgtca tagtagcatc accgaaccaa ttacgcggcg
     1141 actggcatgg agttctggat gtgcgccccg ggcataccta catgtatgtc atgacctata
     1201 atcagag
//
LOCUS       DATCGC010000621         1246 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_407870, whole genome shotgun sequence.
ACCESSION   DATCGC010000621 DATCGC010000000
VERSION     DATCGC010000621.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1246)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1246)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1246
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407870"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..705
                     /locus_tag="VIJ87_05900"
     CDS             <1..705
                     /locus_tag="VIJ87_05900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5443995.1"
                     /translation="PGEDETPVWSPDGRTVAWSGSRSDLARGIFRRSADGGGNEELIW
                     RLDLHTHVRDWTPDGKALIFETTDPNTNNDIWRLDLEGSPKATPIVQTVFSEHNSRLS
                     PDGHWLAYSSNESGRNEIYLQPYPEGGSRLTVTTSGGDQPVWSRDGRKLFFRANGAVN
                     AIDFAAGPQPSVSNARVLFPDRFDNPQAGNHTGYDAFPDGRLLMLQSATNPEGERTKI
                     VIVFNWLEELKQQLGR"
BASE COUNT          305 a          318 c          336 g          287 t
ORIGIN      
        1 ccgggtgagg acgaaacacc ggtgtggtct ccggatgggc gcacagtagc atggtcgggc
       61 tcccgctctg atttggcacg tgggatattt cgccggtctg cggacggagg tggcaacgaa
      121 gaactcatct ggcgtttaga tctgcacaca catgtgcgcg attggacacc tgacggcaag
      181 gccttaatct ttgagactac cgaccccaac acgaataacg atatctggcg gctcgacctt
      241 gaaggttcgc cgaaagccac gccgattgtg caaacggttt tcagtgaaca caattcacgc
      301 ctctccccag atggtcattg gttggcgtac tcgtcaaacg agtcgggacg caacgagatc
      361 tacctccagc catatccgga aggtggatcg cgactaaccg ttactacgag cggtggcgac
      421 caaccagtat ggagtcgcga cggacggaaa ttattctttc gcgcaaacgg cgctgttaat
      481 gcgatcgatt ttgcagctgg tcctcaaccg agtgttagca atgcgcgagt tttattccca
      541 gatcgatttg acaatccaca ggctggcaac cacaccggct acgatgcgtt tcctgatggt
      601 cgactcttaa tgctccaatc tgcaactaat ccggaaggcg agcgcacaaa aatcgtcatc
      661 gttttcaact ggctagagga gctgaaacaa caactgggac ggtgagtgcg aacttggaga
      721 gagtcagtac cataatgcag tagcgcatgg ttcttgagtg aactcctgaa tgagaaagcc
      781 gcagctcttt gctccggaga atcatcctgc tcgttcgatc tgtggtataa agttggcaca
      841 caatttggca cacaaaaaag gtgcagaacg agcaactaaa gcagtggatg cagtgcgtgc
      901 agtgcgaatt cttcttagga aatttagtgc ttgttgattt taaaagagtt ggcccaaggt
      961 agagcactac ttgacacggt aggggtctgg ggttcaaatc cccacgcgcc taccattgtt
     1021 ttaaataact tacctctcgt actgaagttt cccgccactg gtgagccttg ttggtcgcac
     1081 cctcgacatg ctggacaaaa ttgctaagga actcttgtga tgcccaattc gattccttcg
     1141 acggcggcct cgatcgacgc aacacaacga aaactgatcg tcggcatcgt catagcgacg
     1201 ctgatggcgt tggccatcgt gatcgccgac ttggcgagtg gcggcc
//
LOCUS       DATCGC010000622         1416 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_475961, whole genome shotgun sequence.
ACCESSION   DATCGC010000622 DATCGC010000000
VERSION     DATCGC010000622.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1416)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1416)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1416
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_475961"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..397
                     /locus_tag="VIJ87_05905"
     CDS             <1..397
                     /locus_tag="VIJ87_05905"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY5443996.1"
                     /translation="PFVPLTEIASDLRTVTVYFHPIGAQRFIDFLTNAFGASELMRHE
                     GNEMIMHAKVQIGDSVIELGEARFPSQPLPTAIYLFVDDVDARYEQALKAGGISMQPP
                     TDQDYGDRNAWIKDPFDNVWYIAAPKAVQ"
     gene            complement(493..1140)
                     /locus_tag="VIJ87_05910"
     CDS             complement(493..1140)
                     /locus_tag="VIJ87_05910"
                     /inference="COORDINATES: protein motif:HMM:NF024304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEY5443997.1"
                     /translation="MTFPQTNRTNLKRLAKRGHFDHDTVYSILDEGFICHVGFVVDGQ
                     PFVIPTGYARVDDKLYIHGSQASRMLRTLANGIDACVTVTLVDGLVLARSAFHHSINY
                     RSVVVFGNATLVTDREEKNSALFAFSEQVVRGRWNDVREPTEAELKQTTVLCLPLLEA
                     SAKVRTGPPIDDEEDYALGMWAGVIPLRLIAGEPVSDPRLPETIEAPEYAKSYAR"
BASE COUNT          348 a          378 c          370 g          320 t
ORIGIN      
        1 accatttgtg cctttgacgg aaatcgcgag cgatctacgc acggtcacgg tttacttcca
       61 cccaatcggg gctcaacgat tcatcgattt tctgaccaac gcctttggtg catccgaact
      121 catgcgtcat gaggggaacg aaatgatcat gcatgcgaag gttcagattg gtgactcagt
      181 catcgaactt ggtgaggcac gctttccctc gcaaccgttg ccgacagcaa tttatttgtt
      241 cgttgacgat gtcgacgcga ggtacgaaca ggcattgaag gcgggtggaa tctcaatgca
      301 gccgccgacc gatcaggact acggcgatcg gaatgcgtgg ataaaagatc cgtttgataa
      361 cgtttggtat atagcggcgc cgaaggcggt gcagtagccc gactgtcaag gagggctcag
      421 accctctgct ccataaacga tgagccctcc ctgacgtgtg gctactgcac cggacgaccg
      481 gcaccgcacg tattaacgag cgtagctctt agcgtactcc ggcgcttcga tagtttccgg
      541 tagtcgtgga tcgctaactg gttctccggc aatcagcctt aacggaatca caccagccca
      601 catcccaagc gcatagtctt cttcgtcatc tattggcggg ccagttcgca ccttagcaga
      661 agcttctaat aggggcagac agagaacagt cgtttgtttc agttcggctt ccgtaggttc
      721 acggacatcg ttccatctgc cacgaacgac ctgctcggaa aacgcgaaca gcgcggaatt
      781 cttttcttcg cggtcagtaa ccaacgtcgc gttgccaaac acaactactg aacgatagtt
      841 gatcgagtga tgaaatgctg aacgtgccaa caccaggcca tcaacgagcg taactgtcac
      901 gcaagcgtca atcccattcg ccagcgtgcg caacattcga ctcgcttgag atccatgaat
      961 gtataacttg tcgtcaacac gtgcgtagcc agtcggaata acaaaaggct ggccgtctac
     1021 aacaaaacca acatgacaga tgaagccttc atcgagaatg ctatagacag tgtcgtgatc
     1081 gaagtgccct cgcttagcca ggcgcttaag atttgtgcga ttcgtttgag ggaatgtcat
     1141 gacatgaata gtaaagattc cgaagcctgt tagtaaacgt aagcggctcc ctttagagac
     1201 gccttcagaa cctatgggcg tcctcttctg ggaccacagg cgtctcgcct gcactttctc
     1261 acgattcggg cgctctaaat gtagcgaatg caggcgagga cgcttgcccc ttctcacgat
     1321 tcgggcgcgc taaacgtagc gaaggcaggc gaggacgcct gcggtcccag aagagcttgc
     1381 tcgttaaagc gaatgttgtt actaaagggc gacgaa
//
LOCUS       DATCGC010000623         1262 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_141877, whole genome shotgun sequence.
ACCESSION   DATCGC010000623 DATCGC010000000
VERSION     DATCGC010000623.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1262)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1262)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1262
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_141877"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..402)
                     /locus_tag="VIJ87_05915"
     CDS             complement(<1..402)
                     /locus_tag="VIJ87_05915"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY5443998.1"
                     /translation="MNTNYDVIVAGAGPAGTSAAIHLAQHGVRVLLVEQKNFPRPKLC
                     GEFISPECLEHFETLGVACEMRLSGPADITETVFYSRRGKRIIVPSRWFGGSAALGLS
                     RAAMDDNLLRRAKAVGVDVIEDATVTDVIENE"
     gene            complement(413..1165)
                     /locus_tag="VIJ87_05920"
     CDS             complement(413..1165)
                     /locus_tag="VIJ87_05920"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEY5443999.1"
                     /translation="MFTKFKQRSYELEHIDTGNYTAEEYEGCIVELQRVNRWLGDSQI
                     LRDTLLREVSSLDLRTFSVLDVGAGSGELLRVAASWARATKRTLLGVGLELNERSAQA
                     ILEESSSEIAAVRGDALRLPFADGQFDFAICSLFTHHFEDHSVVEIFQEMTRVARRKV
                     FVIDLHRHPLAYFFYTTICRLFLHTRLLREDGALSILRSFKVEELVELAKRAGMNHAV
                     VNRHFPFRLVLTASGKEHPAYAEPGLRTDRAA"
BASE COUNT          321 a          342 c          309 g          290 t
ORIGIN      
        1 ctcgttctca atcacatcag tgactgtggc gtcctcgatt acgtcaacac cgacagcctt
       61 cgcccgccgc aacaggttgt cgtccattgc agcgcggctc aaccctagag ctgcgcttcc
      121 gccaaaccaa cgactcggaa caatgattcg tttgccgcgt cgcgaataga aaactgtttc
      181 agtgatgtcg gcaggaccag acaaccgcat ctcacaagca acacccaatg tttcaaagtg
      241 ctcgaggcat tcgggtgaga tgaactcacc acacagcttg ggccgcggaa agttcttttg
      301 ttcgaccagc aatacacgaa caccgtgttg ggccagatga attgcagcgc tcgtgcccgc
      361 agggccagca ccggcaacaa tcacatcgta atttgtattc attcgttttt gatcaagcgg
      421 cccggtcagt ccttaggcct ggttcggcgt aagcagggtg ttctttaccg gatgcggtca
      481 gaaccaatcg aaacggaaaa tgcctgttta caaccgcatg attcatcccg gctcgtttag
      541 ccaattcgac caattcctcg actttgaaac ttcgaagtat tgaaagtgcg ccatcctcac
      601 gaagcaagcg cgtatgcaga aacaaccggc agatcgtggt gtaaaaaaag taagcgagtg
      661 gatggcgatg aagatcaatg acaaatactt ttcgccgggc gacgcgggtc atttcctgaa
      721 aaatttccac gaccgagtga tcttcaaagt gatgcgtgaa aagagagcag atagcgaagt
      781 caaactgtcc gtcggcaaag gggagtcgca gcgcgtcgcc acgcacagcc gctatttcgc
      841 tggacgactc ttcaaggatt gcctgggctg aacgctcgtt tagttctagc cctacgccaa
      901 gcaaagttcg ttttgtcgcg cgcgcccaac ttgcagctac gcgcaacagt tcaccggatc
      961 cagcccccac atcaagaaca gaaaaggttc tcaagtccaa ggatgaaact tcgcgcagga
     1021 gcgtatccct taagatctgt gagtctccaa gccaacggtt cacacgctgg agttcaacga
     1081 tgcacccttc atattcttca gcagtgtaat ttccagtatc gatgtgctcg agttcgtaac
     1141 tgcgctgctt gaatttggta aacatgagtt cgcgtcctca gtcgacctag gtcatctttt
     1201 cgattatgag ggcgctattc ttcgaaccga agccaatgca attgcagagt gctatttgaa
     1261 cg
//
LOCUS       DATCGC010000624         1035 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_42263, whole genome shotgun sequence.
ACCESSION   DATCGC010000624 DATCGC010000000
VERSION     DATCGC010000624.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1035
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42263"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..402)
                     /locus_tag="VIJ87_05925"
     CDS             complement(<1..402)
                     /locus_tag="VIJ87_05925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444000.1"
                     /translation="MNNINFGRVLLGGLLTGLVLNLGEFLLNEVVFVKQMEDMARRLN
                     IARPGGMFITTAVVLTFFLGIMIVWIYAMIRPRLGPGPKSAIAAGFIGWFCVYFYSGI
                     LNGTLFGVPGNLMLIGLLWGLIEYIVAAIAGA"
     gene            complement(647..>1035)
                     /locus_tag="VIJ87_05930"
     CDS             complement(647..>1035)
                     /locus_tag="VIJ87_05930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444001.1"
                     /translation="PKYKTPVNSILFVGAVTLVLGLLSLTGVGAQEAFQLLDNAGGVF
                     YAVTYLVLFAIPIFGMKAFGVHSPAWLKIACASGFLVTVVYLGFTVVPIIAVESRISF
                     AAKIVGVVVLANGVGGFLYWIGKRND"
BASE COUNT          302 a          270 c          241 g          222 t
ORIGIN      
        1 ggctccagcg attgcggcga cgatgtactc aatcaaaccc cacaacaaac caatcagcat
       61 cagatttcca gggactccga agagggttcc gttcagaata ccggaataga agtagacgca
      121 gaaccagccg atgaagccag ctgcgattgc cgactttggt cccgggccga gtcgcggacg
      181 aatcatggcg taaatccaaa cgatcattat ccctaagaaa aatgtgagca caacggcggt
      241 tgtaatgaac attccgcctg ggcgcgcgat atttagtcgc cgcgccatgt cttccatttg
      301 cttcacgaag acgacttcgt taagaagaaa ctcgccgagg ttgaggacca gtcccgtaag
      361 aagtccacca agaagcactc gtccgaagtt gatgttgttc actttgaata ccgtgtggca
      421 cagacttcag tctgtgttgg ttaaattcac gagtcttgga aatacatcga cacagactga
      481 cggaagcgct gaataagtaa aaatcctgtt cgtgtttgtt cgtgtgactt cgtggatcgt
      541 tctatttgcg gcggaggaag gatccacgaa atcacactaa acaacacgaa acgaggacct
      601 cttgcactta atcaaaagtc ccgaggtctg cgccacaatg cactcatcaa tcgttcctct
      661 ttcctatcca atacagaaac ccgccaacac catttgccag cactacaacc ccaacgattt
      721 ttgcagcgaa gctgatacga ctttcaactg cgataattgg tacgacggta aaacccaggt
      781 agacgacggt aaccagaaag ccggatgcgc aagcgatctt cagccatgct ggagagtgaa
      841 caccgaaggc tttcattcca aatatcggaa tcgcaaacaa caccaggtaa gtcacggcgt
      901 agaaaactcc gccagcatta tctagaagtt gaaatgcctc ctgggcgccg acgccagtaa
      961 ggctcaataa tccgagaaca agagtgacag ctcctacgaa caatatcgag ttcaccggcg
     1021 tcttgtactt tggat
//
LOCUS       DATCGC010000625         1657 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_77814, whole genome shotgun sequence.
ACCESSION   DATCGC010000625 DATCGC010000000
VERSION     DATCGC010000625.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1657
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77814"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..722
                     /locus_tag="VIJ87_05935"
     CDS             <1..722
                     /locus_tag="VIJ87_05935"
                     /inference="COORDINATES: protein motif:HMM:NF013335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HEY5444002.1"
                     /translation="HPPLIEGGSEPLEKAVTARRSPAVDFLIRTSRRFSKEKRLTVLM
                     IGAATDVASAILLDPSIVDRIRVVQMGFTNEQGGNEFNIANDVYAVQAILNSSVPLVI
                     GPGDVCRASLSLKFEEARKMLEQRGAIGSWLWEEYQAWYFRVVKPLRVNDFSKSWVIW
                     DDIALAYVLGMTSQHNSPRPRMRDNMKFENVQTDREVTWITDVDENRLWADFLKLVDE
                     YQHKHPIRRRVNGNRLTFGMP"
     gene            821..>1657
                     /locus_tag="VIJ87_05940"
     CDS             821..>1657
                     /locus_tag="VIJ87_05940"
                     /inference="COORDINATES: protein motif:HMM:NF012457.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 1 glycosylhydrolase"
                     /protein_id="HEY5444003.1"
                     /translation="MTKRISRRTFAKIAGTAALASTTSTALTPLGRTEAAMQNTQARE
                     FPKGFLWGSATASYQVEGAANEDGRGPSIWDTFSHTPGKVVENATGDVADDHYHRYKE
                     DVQLMKSLGVKTYRFSIAWPRVFPSGSGSPNPKGLDFYNRLVDELLANGITPFATLYH
                     WDLPQPLQDNGGGWESRDTSKAFGDYAGYVAERLSDRLKNFFTINEFGAFVELGYRLG
                     IHAPGLKLPPGRFNQTRHHAVLGHGLAVQAIRAKAKPGTKVGLAENMTICVPVMETSE
                     HIE"
BASE COUNT          415 a          380 c          464 g          398 t
ORIGIN      
        1 ggcatcctcc gttgattgag ggtggtagtg agccgttaga gaaagccgtt actgccaggc
       61 ggagtcccgc agtcgatttt ctgatcagga cgtcgcgcag attctcgaaa gagaaacggc
      121 taactgtcct gatgattggc gccgcaacgg acgtggcatc ggcgattcta cttgaccctt
      181 cgattgtcga tcgtattcgt gtagtccaaa tgggttttac gaatgaacag ggaggcaatg
      241 agtttaatat cgcgaacgat gtttatgccg tgcaggcgat tctgaattcg agcgtccctt
      301 tggtgatcgg gcctggggac gtttgtcgag caagtttgtc gctgaaattc gaagaggcgc
      361 gaaagatgtt ggagcagcgc ggtgcgattg gctcgtggct atgggaagaa tatcaggcct
      421 ggtacttccg cgttgtgaag ccgctacgag taaatgattt ttccaagtcg tgggtaattt
      481 gggacgacat agcgctcgcg tatgttttgg gcatgaccag ccaacacaat tcgccgcgac
      541 cgagaatgcg cgacaatatg aaattcgaga acgtccagac tgatcgagaa gtcacgtgga
      601 ttactgacgt tgacgagaat cggttatggg cggatttcct taaactcgtc gatgaatacc
      661 aacacaagca tcctattcgt agacgagtaa atggaaatag attgacgttt ggaatgcctt
      721 agagtggcac agacttcagt ctgtgttgct gaaggtacca agtacactaa ttgaaacaac
      781 acagactgaa gtctgtgcca catcaatacg gagacaatcg atgactaaga gaatttcgcg
      841 tcgcacgttt gcaaagatcg caggcactgc ggcgctggct tcaacaactt caactgcact
      901 gacgccactt gggcgaacgg aagctgccat gcaaaacacg caagcgcgcg agtttcccaa
      961 aggtttcctc tggggttcag cgacggcgtc ataccaggtt gagggtgccg caaatgagga
     1021 tggacgtggg ccttcaatct gggacacgtt ctcgcacacg ccaggcaagg ttgttgaaaa
     1081 cgcgaccggc gatgtagcag acgatcatta ccatcgctat aaagaagacg ttcagttgat
     1141 gaagtcactt ggcgtcaaga cctatcgatt ctcgatcgca tggccacgtg tgtttccaag
     1201 cggaagtggt tcgcccaatc ctaaaggtct cgatttttat aaccgccttg ttgatgaatt
     1261 actcgctaac ggaatcacgc catttgcaac tctgtatcat tgggatctgc ctcagccgtt
     1321 acaagacaat ggtggtggtt gggagtcgcg cgacacttca aaagcatttg gtgactacgc
     1381 tggttatgtt gccgagcgtt tgtctgatcg cctgaagaac tttttcacga tcaatgaatt
     1441 tggcgcgttt gttgaactgg gctatcgatt gggtattcat gctccaggtc taaagttacc
     1501 gccaggccgg ttcaaccaaa cgcggcacca cgcagtgtta ggtcatggtt tagccgtcca
     1561 ggccatcagg gcgaaagcaa aaccgggaac gaaggtcggc cttgcggaga acatgacgat
     1621 ttgcgtgccg gtaatggaga catccgaaca catcgaa
//
LOCUS       DATCGC010000626         1466 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_341342, whole genome shotgun sequence.
ACCESSION   DATCGC010000626 DATCGC010000000
VERSION     DATCGC010000626.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1466)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1466)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1466
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_341342"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1466)
                     /locus_tag="VIJ87_05945"
     CDS             complement(<1..>1466)
                     /locus_tag="VIJ87_05945"
                     /inference="COORDINATES: protein motif:HMM:NF015140.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007154 - cell communication [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Calx-beta domain-containing protein"
                     /protein_id="HEY5444004.1"
                     /translation="ITVLGTIVDNEHLGFIVIDIPDNLLIQGDVTFHLTLLSSDVAQL
                     GPVSSTQITITDDDLGNVIQFSSANYTVSEAGPYAAITVNLIPNGDPSESSLIDFTAT
                     PITAYAGFDFSPITTTLVFGPNEFSKTVLVPILEDHLTEAAETFRVTLSNPSFGCVLG
                     AQSTSIVSILDNDLSSIVQFSPVDYQVAENGGAVAMTVSVNRANNPSDTITVHYHTIA
                     NTATAGQDFTAINAGTLFFDSGETQKSITVSIIDDPLIEGIENFFVVLTDATAQAEDG
                     SPSSASIGIDNTANITILDNDSPTATIGFSQDSFDAGEGAGSAQLVVTRSGGLDVSAT
                     VNYAASDGTAIAGNDYISSTGSITFAIGEVSKVIEIPLIDDTIPENTLSFTVTLTADG
                     GNGFIGGRSTATVNIIDNDATTFRFNPGTYTVDEGLGAVVLTVEALRIGDPNDVISVD
                     FVTSNGTAMEGSNYTRTSGRLTFGPNVNSQTITVPIID"
BASE COUNT          375 a          349 c          369 g          373 t
ORIGIN      
        1 tatcgataat cggaacagta attgtttgag agttgacgtt tggaccgaaa gtgagtcgac
       61 cagacgtgcg ggtataattg ctcccttcca ttgcagtgcc gttactggtc acaaaatcga
      121 cactgattac gtcattggga tcaccaatcc ttaacgcttc tacagttaga accacagccc
      181 caagtccctc atcgaccgtg taagtgccgg ggttaaacct aaaggtcgtt gcgtcattgt
      241 cgatgatatt gaccgttgcg gtactgcgtc cgccgataaa tccattacct ccgtccgctg
      301 ttaatgttac agtgaaactg agggtgtttt ctgggatcgt gtcatcgata agaggaattt
      361 cgatgacctt cgaaacttcg ccgattgcaa atgtgatgct tccagtgctg gaaatgtagt
      421 cgtttccagc aatggccgtt ccgtccgacg ccgcgtaatt aacagtcgca gaaacatcca
      481 agccaccgga tcgggttacg acaagttggg cactgcccgc cccctctcca gcatcgaatg
      541 agtcttggct gaatccaatc gtggctgtcg gcgaatcgtt gtccaggatc gtaatattcg
      601 cagtgttatc aatgccaatg ctggcactag acggcgaacc atcctctgcc tgtgctgtcg
      661 catctgtcaa aaccacaaag aaattctcga ttccttcgat tagaggatca tcaattatcg
      721 aaaccgtaat cgacttctga gtttcacccg aatcgaaaaa tagggtcccg gcgtttatcg
      781 ctgtgaagtc ctgaccagcg gtcgcagtgt ttgcaatagt atggtaatgc accgtgattg
      841 tatcggacgg attgtttgcc cggtttacgg aaacggtcat tgcgacagcg cccccatttt
      901 ccgcgacctg ataatcaacc gggctgaact ggacgatgct cgaaagatcg ttgtcgagaa
      961 tactcacgat cgaagtgctt tgtgctccga gaacgcagcc gaaactcgga ttactgagag
     1021 tgactcgaaa cgtttcggcg gcttcggtaa gatgatcttc cagaattgga acgagcaccg
     1081 ttttcgagaa ttcgttgggc ccaaaaacaa gcgtggtggt gatcggcgaa aaatcaaagc
     1141 cggcataggc agtgattgga gttgcggtaa agtctattaa cgatgactca gatggatcac
     1201 cattagggat caagttgact gttattgccg cataaggtcc ggcttccgaa accgtgtaat
     1261 tcgcgctact gaattgaatc acattgccga gatcgtcatc ggttatagta atttgcgtgg
     1321 aactaacggg gccaagctgt gcgacatcac ttgaaagcaa cgtaaggtga aaggtcacat
     1381 cgccttgaat cagcaggttg tctgggatgt cgatcacaat gaaacccaaa tgctcattgt
     1441 cgacaattgt gcccaaaact gtgatg
//
LOCUS       DATCGC010000627         1436 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_274888, whole genome shotgun sequence.
ACCESSION   DATCGC010000627 DATCGC010000000
VERSION     DATCGC010000627.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1436)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1436)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1436
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_274888"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            417..1193
                     /locus_tag="VIJ87_05950"
     CDS             417..1193
                     /locus_tag="VIJ87_05950"
                     /EC_number="1.1.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF005559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose 1-dehydrogenase"
                     /protein_id="HEY5444005.1"
                     /translation="MNEHEFEGKVAFVTGATSGIGRACALGFARGGARVACIGRNATA
                     LQKVGDEITTIGTEVLTVQADLAVEAEAEQALTKALAYFGGIDILVNAAGHISNGTIE
                     NTSLEAWDTMLNVNVRTIFHLMQKALPSLIERRGNIVNVSSVTGLRAFPGVLAYCVSK
                     AALDQLTRCSALELAAKGVRVNAVNPGVVVTQIHKRGGMNDDSYAAFLEHSKTTHPLG
                     RVGRPEEIADLVLFLASDRATWITGATYSIDGGRAQTCAR"
     gene            1256..>1436
                     /locus_tag="VIJ87_05955"
     CDS             1256..>1436
                     /locus_tag="VIJ87_05955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444006.1"
                     /translation="MTYPNAYNQNAAVTNRAATITIQRKAQTNVIKVAFLIVGALITL
                     LLGLLTLLVIGIETGP"
BASE COUNT          364 a          389 c          364 g          319 t
ORIGIN      
        1 aacaccacac tgaccgccag gcctgcgggt aaccacggag cttcatcgcc accattggcc
       61 agcatccacc aaagaattag accgagcccg gtcgcaatca caatgactgc gatcatgtat
      121 cctgcgctcg atggcgttcg actgcgcgac ctaccgcgaa ggtcgtctgc agatcgcgat
      181 tgagatcgcg tggtcctcga aaacagttcg tctgcagaat tatttcccaa tgatcgcctc
      241 caggctggtt gcgccagccc gaacagatga gtcggcgaag gccactttga cactcgtgtt
      301 gccgcgggga ttccgtcgaa aaccatcaaa gcataataat actcaacttt tccgagtttc
      361 gctgtcaata tagactaacg acgcaacaca aatcacgttt gtgaggatca aaccagatga
      421 acgaacatga atttgagggc aaagtagctt ttgtgaccgg cgctacatcg ggaatcgggc
      481 gagcttgtgc cctgggcttt gcaaggggag gcgcaagagt agcatgcatt ggacgaaacg
      541 caacggccct tcagaaagtg ggcgatgaaa tcacaaccat tggaactgaa gtattaacgg
      601 tccaggccga tctggccgtc gaggcagaag cagaacaggc tttgacaaaa gcgctagcgt
      661 attttggtgg aatcgatatc ctcgtcaatg ctgcaggtca cattagcaat ggcaccattg
      721 aaaacacttc actggaggcc tgggacacca tgctcaatgt caacgttcgt accatcttcc
      781 atttgatgca aaaggcatta cccagcctca ttgaacgccg tgggaacatc gtcaacgttt
      841 cgagtgtaac cggattaaga gcctttccag gtgtcctcgc ctactgcgtt tcgaaagcgg
      901 cgctagatca gttgactcgc tgttccgcgc tcgaacttgc ggcgaaaggt gttcgagtca
      961 atgccgtcaa tcccggtgtg gtcgtaacac aaatccacaa acgtggtggc atgaacgacg
     1021 actcgtatgc agctttcctt gaacactcga agacgactca tccgctgggc cgcgtcggtc
     1081 gacctgagga gatcgctgac cttgtcttat tcttagcttc tgatcgtgca acctggatta
     1141 caggcgcgac ctattcgatt gatggcggcc gtgcacaaac ctgtgcgcgc taggtcaaaa
     1201 gttctatgga gctcaagacg ttccagatat actccggaaa attagggtct ggtcgatgac
     1261 ttatccaaac gcctacaacc aaaacgccgc agttactaac cgagcggcaa ccatcacgat
     1321 tcaacgtaaa gcgcagacta acgtcatcaa agtcgccttc ttgatcgtag gcgccctcat
     1381 cactttgttg ttgggtctac tcacgctcct cgtgattggc atcgaaacag gcccgg
//
LOCUS       DATCGC010000628         1070 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_108558, whole genome shotgun sequence.
ACCESSION   DATCGC010000628 DATCGC010000000
VERSION     DATCGC010000628.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1070
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108558"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            44..>1070
                     /gene="ligD"
                     /locus_tag="VIJ87_05960"
     CDS             44..>1070
                     /gene="ligD"
                     /locus_tag="VIJ87_05960"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF045432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-homologous end-joining DNA ligase"
                     /protein_id="HEY5444007.1"
                     /translation="MKKDDSVEVLTIDGREVRVTHPDKPYFSAQTKLSKLDLVHYYQE
                     VAAGAINGIRDRPIVLKRFVDGAEGQAFYQKRAPTNLPEWMRTTTLSFPSGRKAEEVV
                     VDSAPGLAWIVNLGCIELHPHPVRSGDLDHPDELRVDLDPGPGVSWDDVRRVALEVKS
                     LLEELGLRGWPKTSGSRGMHVNVRIQSRWTFMEVRRAALALSRAVERRVPTLATSKWW
                     KEERHGVFLDYNQNAKDRTTCSAYSVRPLPDARVSTPLDWREVDDCDPADFTVLTVPA
                     RFAAIGDPHREMDTNPGSLEELLELADKDEASGLGDAPWPPHFRKMEGEAPRVAPSRA
                     KGAAKTPR"
BASE COUNT          235 a          294 c          301 g          240 t
ORIGIN      
        1 tgcattggca cgtcaactcc agttgatctg aagaatcatc gtcgtgaaaa aggatgactc
       61 agtagaagtt ctcacgatcg acggacgtga ggtccgcgtc actcatccgg acaaacctta
      121 cttttctgcc cagaccaagc tatcgaaact ggatctcgtt cactactacc aggaagttgc
      181 ggctggcgca atcaatggta tccgtgatcg tcccatcgtg ctcaagcgct tcgtcgatgg
      241 tgccgaaggc caggcgtttt accaaaagcg cgccccaaca aatcttcccg aatggatgcg
      301 cacgacaacg ttgtcattcc cttcgggacg caaggcagaa gaagtcgtcg tagatagtgc
      361 gccgggcctc gcgtggattg ttaacctggg ctgtattgaa ttacacccgc atccagttcg
      421 ctccggtgat ttggatcacc cggacgaatt gcgcgtagat cttgatcccg gcccgggagt
      481 tagctgggac gacgtcagac gagttgcact cgaagtgaaa tcgctcttgg aagaactggg
      541 tcttcgtggt tggcctaaga ccagcggttc acgtggaatg cacgttaacg ttcgaattca
      601 atcacgctgg acgttcatgg aagtgcggcg ggctgcgctt gcattgtctc gcgctgttga
      661 gcggcgggta ccaactctag ccacttcaaa atggtggaaa gaggaacgac atggtgtctt
      721 tcttgactac aaccagaatg ctaaggaccg cacaacgtgt tctgcttatt cggtgcgtcc
      781 ccttcccgat gcgcgagtgt caacccctct agactggcgt gaagtcgatg actgcgatcc
      841 ggctgatttc acggttctga ctgtgccggc gcgcttcgct gcgatcgggg atccacatcg
      901 ggagatggac accaatccag gttcactcga agagttgctc gaactcgctg acaaggatga
      961 ggcttcaggt ctcggcgacg ccccctggcc accgcacttt cgcaagatgg aaggcgaagc
     1021 tcctcgtgtt gctccttccc gtgcaaaggg cgcggccaag acaccgagag
//
LOCUS       DATCGC010000629         1016 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_141926, whole genome shotgun sequence.
ACCESSION   DATCGC010000629 DATCGC010000000
VERSION     DATCGC010000629.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1016)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1016)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1016
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_141926"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1016)
                     /gene="radA"
                     /locus_tag="VIJ87_05965"
     CDS             complement(<1..>1016)
                     /gene="radA"
                     /locus_tag="VIJ87_05965"
                     /inference="COORDINATES: protein motif:HMM:TIGR00416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HEY5444008.1"
                     /translation="GIGKSTLLLQVADRLSAASTTVLYVSGEESERQIKLRGERLRVE
                     AKNVYLLPETNLENIFREIDRVKPGTIIVDSIQTVFSGAIESAPGSVSQVREVAHQFL
                     MLAKNRGIPVFLIGHITKEGSLAGPKALEHIVDTVLYFEGERHHNHRIVRATKNRFGA
                     ANEVGVFEMTGTGLIPVANPSQMFLQERPLNVAGSIVTACMEGTRPMLVEIQALVSST
                     KYGTGRRMTQGVDQSRVALMIAMLEKRAGFQLVGEDVFVNIAGGLEVDEPAADLGVVT
                     AIASSFKNLTIDPQTAVFGEVGLTGEVRGAMQASVRAREAQALGFKKIVMPASNVSGL
                     ERLLG"
BASE COUNT          245 a          311 c          234 g          226 t
ORIGIN      
        1 cccaacaatc gttctaaacc agaaacattc gacgccggca tcacgatctt cttaaacccg
       61 agcgcctgcg cctcccgtgc ccgtaccgat gcttgcatgg cgccgcgaac ctcgccagtt
      121 aaaccaacct ctccaaacac cgccgtctgg ggatcaatgg tcaggttctt gaagctcgac
      181 gcaatcgcag tcacaacgcc gaggtcggca gctggttcgt cgacctcaag tcctccggca
      241 atgttcacaa acacatcctc accaaccaac tgaaacccgg cacgcttctc cagcattgca
      301 atcattaacg ctactcgact ctgatccaca ccctgggtca ttcgtctacc agttccatac
      361 ttcgtgcttg aaaccaaggc ttgaatctca accagcatcg gacgagtgcc ttccatgcac
      421 gcggtcacaa tcgagccggc aacatttagc ggacgctcct gcaaaaacat ctgcgacgga
      481 tttgccaccg gaatcaaacc ggttcctgtc atctcaaata caccgacctc gtttgccgca
      541 ccgaatctgt tcttcgttgc ccgaacaatg cgatggttgt gatgtcgttc gccttcgaaa
      601 tacagcaccg tgtcgacgat atgttcgaga gctttcggac cagcaagcga cccttctttc
      661 gtgatatgtc cgatcagaaa aactggaatg ccacggttct tggcgagcat caggaattgg
      721 tgcgcaactt cacgcacctg agaaacggat ccgggcgcag actcaatcgc acccgagaac
      781 acagtctgga ttgaatcgac aatgatcgtt ccaggcttta cgcgatcaat ctcgcggaag
      841 atgttctcca ggtttgtttc gggaaggaga tagacatttt tggcttcgac gcgaagtcgt
      901 tcgccacgca atttgatctg gcgttcagac tcttcgccag aaacgtaaag aacggtggtg
      961 ctggccgcgc ttagccggtc agcgacctga agcagcaaag tgcttttccc aatccc
//
LOCUS       DATCGC010000630         1049 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_442053, whole genome shotgun sequence.
ACCESSION   DATCGC010000630 DATCGC010000000
VERSION     DATCGC010000630.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1049)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1049)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1049
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_442053"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1049)
                     /locus_tag="VIJ87_05970"
     CDS             complement(<1..>1049)
                     /locus_tag="VIJ87_05970"
                     /inference="COORDINATES: protein motif:HMM:NF012700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444009.1"
                     /translation="VSFALDNEKNAMVISGANAGGKTVVLKTTGLLSLMAMSGLSVPA
                     KSAQFPFYVSVLADIGDHQSLAANLSTFTSHVANIAQMIEICESPALVLLDEVGTGTD
                     PEEGSALGVAVVDHFRRVCNAHVIATTHYSGLKMYAGNEEGVLNASVEFDEKTLQPTY
                     RLIVGVAGASSGLEIARRFGVPKGIIDVAVISVNDSSLQATEYLKRIKRESEEAEALR
                     VALEEERAAVAEKFAGLEKEAAKREQDRQVNFEKTVQRTVSELERRSRELVSKIQDRA
                     ERLKVEREAQRQTAEMKREAQRVTKAVVQTVVGTFPIEDESKGIRIIRDGQVLTKTVE
                     PEEEAPRYRPVAERE"
BASE COUNT          229 a          296 c          246 g          278 t
ORIGIN      
        1 atctcgcgtt cagcaacagg gcgataacgg ggtgcctctt cttcgggctc gacagtcttt
       61 gtaagcacct gaccgtcgcg aataattcga atacctttag attcatcttc gatcgggaat
      121 gttcccacga cggtttgtac aactgctttt gtaacgcgtt gtgcttcacg cttcatctcc
      181 gcagtttgtc gttgtgcttc tcgttcaact ttgagacgtt cagcacgatc ctgaattttt
      241 gagactagtt ctcgtgatcg tcgctccaat tccgacactg tacgttgaac tgtcttctcg
      301 aaattcacct gtcggtcctg ctcacgtttt gccgcttctt tctccaaccc ggcaaacttc
      361 tcggcaactg cggcgcgctc ttcttcgagg gccactcgta aagcctctgc ttcctccgac
      421 tcacgtttaa tccgctttag atactcggtc gcctgcaaag atgaatcgtt aactgaaatt
      481 actgcgacgt cgataatgcc ttttggtacg ccgaaacggc gtgcaatctc aagtccggag
      541 gaggcgccgg cgactcccac gatcaatcga tacgttggtt gcagcgtctt ctcatcaaat
      601 tcgacgctcg cgtttagcac cccttcttcg tttcccgcat acatcttcaa accgctgtag
      661 tgagtggtcg cgatgacgtg cgcattgcag acgcgacgga agtgatcgac aactgccaca
      721 cccagggccg atccttcttc tggatcggtg ccggtaccaa cttcatccaa caaaaccagt
      781 gcaggtgatt cgcagatctc aatcatctga gcgatgttcg ccacgtgaga agtaaacgtc
      841 gaaagattcg ctgccaggga ttggtggtcg ccaatgtctg cgagaactga aacatagaac
      901 ggaaactggg cagacttcgc tggtacggaa agtccagaca tagccatcaa cgacagcagt
      961 cctgttgttt tcaagaccac agtcttgcca ccggcgtttg cacctgagat caccatggca
     1021 ttcttttcgt tgtcgagcgc aaacgatac
//
LOCUS       DATCGC010000631         1073 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_108646, whole genome shotgun sequence.
ACCESSION   DATCGC010000631 DATCGC010000000
VERSION     DATCGC010000631.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1073)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1073)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1073
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108646"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..199
                     /locus_tag="VIJ87_05975"
     CDS             <1..199
                     /locus_tag="VIJ87_05975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444010.1"
                     /translation="SRFSRNSLQQWLEGPIPYQHDQSRPEVASRRDPSHIIIGVLHGT
                     FPQIVRMLTISAGYGPSVKTK"
     gene            complement(772..>1073)
                     /gene="crcB"
                     /locus_tag="VIJ87_05980"
     CDS             complement(772..>1073)
                     /gene="crcB"
                     /locus_tag="VIJ87_05980"
                     /inference="COORDINATES: protein motif:HMM:NF010794.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HEY5444011.1"
                     /translation="AVTFGGTFPWHTLLVNVSGCLLMGMVAGWFAFRGESGQEFRLFL
                     TTGVLGGYTTFSAFSLDVVLLWERGEVLSAALYIGGSVVLSVACVLLGLALMRTQ"
BASE COUNT          285 a          288 c          286 g          214 t
ORIGIN      
        1 atcgaggttt tctcgcaact cacttcaaca atggctggaa ggacccattc cctaccagca
       61 cgatcagtcg cgccctgagg tcgcgagtag gcgcgatcct tcacatatca tcattggcgt
      121 tcttcacgga accttcccgc agattgtgag gatgctcact atttcagcag gttacggacc
      181 gagcgttaaa acgaaataga gcggcacgac ccgtgcttga cctgaatgcg agaaccattt
      241 tgcgactcct tactttgagg gtcatttcta ataggggaaa ggaaaatatc aatgacgata
      301 gaacaagttc tattgatgaa cggcgcgcag tacctctggg tctttggact ccttggactc
      361 ttggccctgg cgtggggcag gctagaaaga gagaagtaag acatgaacga gcattcaata
      421 gtgcgcatgg gtcgtgcctt aaacggcatg actacccgca cgcgaccttg gaagaccatc
      481 gctaaacact tgctcgggag gaaagccata cagaatatcg gcgatggaag cggtgggcag
      541 ttcgccttag taacggcgtg cagagaccaa atcgatttct gtctctgggc aactagggac
      601 ggagctgaga acttgaagaa ttggctagac ctggtgggat gttgcagagg atgctggccg
      661 aagggacact acattgtaga cctagaacag ccgagctgct cgcttcagcc ctgacgggta
      721 tgctgcaccg tctcgcccat aacgcttatc cttgtccctt accaagtgtt ctcactgtgt
      781 gcgcatcagg gccaatccca ggagtacgca ggcgacagag aggacaaccg aaccgccaat
      841 gtagagcgca gcactcagga cttcgccacg ctcccagagt aggacaacat ccaacgagaa
      901 ggcggaaaac gtagtatagc ccccaagaac tcctgtcgtt aggaatagcc gaaactcctg
      961 cccactctct ccgcgaaagg cgaaccagcc tgctaccata cccatcagca aacaaccaga
     1021 gacattcacg aggagcgtat gccagggaaa tgtcccgcca aaggtcacgg cag
//
LOCUS       DATCGC010000632         1191 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_176731, whole genome shotgun sequence.
ACCESSION   DATCGC010000632 DATCGC010000000
VERSION     DATCGC010000632.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1191
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176731"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(139..>1191)
                     /locus_tag="VIJ87_05985"
     CDS             complement(139..>1191)
                     /locus_tag="VIJ87_05985"
                     /inference="COORDINATES: protein motif:HMM:NF013219.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEY5444012.1"
                     /translation="VQVMPVAATSNFPIQQNRATLRKTLVACGALLTALLLAILVTSL
                     VGSERLPSGGALCALVSLGTNQCGLTSDQFDILFQIRLPRILLAAAVGGSLATAGASY
                     QALLRNPLAEPYLLGISNGAAVGTMLALVFFGRLEWSRPLMAFAGALLATFAVYRLAR
                     GKVGASPERLILAGVIVTTLLSSVIVFVTTLMDATRIRSFTFWLLGDLSGASRGLLPL
                     ALAITITGAIALTFNARSLNLLMLGERDAFDLGVEVGRIRIIVFVVASLLVGSSVAAS
                     GSVGYVGLVVPHLARLSLGSDNRISIPSAALGGALFVIVADTIARTVIAPRELPVGAI
                     TALIGAPLFIYLLKRS"
BASE COUNT          332 a          317 c          310 g          232 t
ORIGIN      
        1 gagcgtagta gcgttgactt accagctccg ttgggaccaa tgagcgcagt gacaattccc
       61 gggcgaagta gcagtgaggc ggcatcgact gcttttctgt cgccatattg aattgtgaga
      121 tcccgagcct cgagcacgtt acgacctctt caaaagatag ataaatagcg gtgcgccgat
      181 gagcgccgta attgcaccga ctggtaattc acgcggcgca atcacggtcc gcgcaatggt
      241 gtccgcgaca attacgaaca gcgcgccacc gagtgccgca cttggaatac tgatgcggtt
      301 atcgctgccc agggaaagcc ttgcgagatg tggaacgaca agaccgacgt aaccgactga
      361 tccactcgcc gcaactgaac taccgaccaa gaggctcgcc actacgaaga caattattct
      421 gattcgtcct acctcgacac caaggtcaaa tgcgtcgcgt tcgccaagca ttagtaagtt
      481 caacgaacga gcgttgaatg tcagcgcgat tgcacccgta attgtgatag ccagggcgag
      541 tggtaacagg ccgcgacttg caccggagag atcacctaac aaccagaaag taaaagatcg
      601 aattcgggtc gcgtccatca gggttgtgac gaaaacgatc accgaggaaa gaagtgttgt
      661 tacgattact ccggcaagaa tcaatcgctc aggcgaagct cccaccttgc ctcgcgccaa
      721 tctataaacg gcaaacgtcg ccaacagtgc tccggcaaaa gccattaacg gccgactcca
      781 ttcaagtcgt ccaaaaaaaa ctaaagccaa catcgttccc acggcagctc cattcgaaat
      841 cccgaggaga taaggttcag cgagtgggtt tcgcagcagt gcttgataac ttgcaccggc
      901 agttgcgagt gagcctccga ctgccgcagc gagtaaaatt cgcggcaaac gtatttggaa
      961 aagaatgtcg aactgatcag aagttagacc gcactgatta gtcccaagtg aaacgagtgc
     1021 acaaagcgct cctccacttg gaagtcgttc gctgccaact agcgaggtca caagaatcgc
     1081 gagtaaaaga gcggtcaaca aagcgccaca cgcgaccagg gtcttacgta gcgtggctcg
     1141 gttttgctga ataggaaaat tagatgtagc agctactggc atcacttgaa c
//
LOCUS       DATCGC010000633         1201 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_108671, whole genome shotgun sequence.
ACCESSION   DATCGC010000633 DATCGC010000000
VERSION     DATCGC010000633.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1201
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108671"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(178..810)
                     /locus_tag="VIJ87_05990"
     CDS             complement(178..810)
                     /locus_tag="VIJ87_05990"
                     /inference="COORDINATES: protein motif:HMM:NF016176.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HEY5444013.1"
                     /translation="MRLVTGTLILGLLAMVACSNPAADKTKALTGEATAPAPQSATQG
                     VKYLITSQNSKIEFVASKMVTGSQTGSFKDFSGTIDFAGQPEKSQVNVTIDMNSVVTD
                     AEGLTTHLKTPDFFDVAKFPKATFTSTEIKPGGDKGASHTVTGNFQLHGVTKSISFPA
                     TIGVSADAITVESTFTINRKDFGINYAGPADNLIRDEVVMTLHIKAEKAK"
BASE COUNT          287 a          302 c          283 g          329 t
ORIGIN      
        1 accaacgcaa gaggctgtct caaaactcgg attacggtga gtttcttgtt cgtgttattt
       61 cgcgtgattt ggtggatcgc ctgttacgct ccgagaaaag cgatccccgc gcatcacacg
      121 aactaacacc aacgaagtcc caaggcaagg ttggagtaca tccaagctga ataattctta
      181 cttcgctttt tctgccttga tgtgcaacgt cattacaacc tcatcgcgaa tcaagttgtc
      241 cgctgggccc gcatagttga ttccgaagtc tttccgatta attgtgaatg tactttcgac
      301 ggtaatcgca tcggcggaga caccaattgt cgcgggaaag ctgatcgact ttgtaacccc
      361 gtgcagttga aagttcccag ttacggtatg cgaagcaccc ttgtctccgc cgggtttaat
      421 ctcggtggat gtaaaggtcg ctttgggaaa tttggctaca tcgaagaagt cgggtgtctt
      481 cagatgtgtc gtcaagcctt cggcatcggt aactaccgag ttcatatcta tagtcacgtt
      541 cacctggctc ttttctggct ggcccgcaaa gtcgatggtt ccggagaaat ctttaaacga
      601 accggtttga cttcccgtta ccatcttgga agcgacaaac tcgatcttgg agttctgtga
      661 cgttattaga tacttgacac cttgtgtagc tgattggggt gcgggagcag ttgcttcacc
      721 cgtaagagcc ttagtcttgt ccgcggcggg attggagcaa gccaccatcg ccagcaagcc
      781 cagaatcaaa gttcctgtca ctaagcgcat tctctattcc tccggtttac taatttagtt
      841 tcagcattct tctgccgcag cccgcgggtc ggtacagatt acccgagaat gctcggttga
      901 cgagacatta tcacgagctg attgaggcta acaaaaacca ccttaactca ttcttgaacg
      961 aagaaatcgt tcgtcgattt gagccgacgt cattgactaa ctattctcgt agagagtcac
     1021 atttttgtag attcaagcag aatgcttgac actcactcaa ctagccccct aacatgccgc
     1081 atccgttgta ccccggcatc cgcaaaggtc gagttttagg cttttcaagt tcctatctga
     1141 ggagttttcg tagcgagcct tctgcctttc aacgaccatg agtaaaaggg gaaacctcga
     1201 a
//
LOCUS       DATCGC010000634         1339 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_476163, whole genome shotgun sequence.
ACCESSION   DATCGC010000634 DATCGC010000000
VERSION     DATCGC010000634.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1339)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1339)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1339
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_476163"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..884)
                     /locus_tag="VIJ87_05995"
     CDS             complement(<1..884)
                     /locus_tag="VIJ87_05995"
                     /inference="COORDINATES: protein motif:HMM:NF016201.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SpoVR family protein"
                     /protein_id="HEY5444014.1"
                     /translation="MLDLEIRDLEVAVDQIWEVARGFGLDPYPTNFEIVPAPVMYEVG
                     SYALPGRYSHWTFGKAYQRMKTMYDFGLSKIYEVVINTNPAYGFLLETNSPVQNKMVI
                     AHVLGHVDFFRNNTYFSKTNRRMVESVSTHAQRMMEYEFKYGRKNVERFLDAVLAIEE
                     HIDPYFFIKREISAAEEKRRAEHQHKDGPYDDLWLLDKNERETRELNRGDQANENERP
                     VRERLPEKDLLFYLMKNSPTLAAWQRDAVAMVHDEMEYFVPQMQTKIMNEGWASIWHA
                     RIMRELDLNDNEHIEFANL"
     gene            complement(887..>1339)
                     /locus_tag="VIJ87_06000"
     CDS             complement(887..>1339)
                     /locus_tag="VIJ87_06000"
                     /inference="COORDINATES: protein motif:HMM:NF016195.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF444 family protein"
                     /protein_id="HEY5444015.1"
                     /translation="KYDNVDIVFISHHTEAKEVTEEQFFTQGESGGTVVSSAYQLALD
                     IIKQRYRPEDWNIYPFHFSDGDNYYSDNEEAVKLADELIKICNLFGYGEIGEEGSSSY
                     RRSSGALLSIFSDRLQNKEHFVGVRIDDKEDVYPALKEFFGRRGVETP"
BASE COUNT          302 a          343 c          333 g          361 t
ORIGIN      
        1 aggttagcaa actcaatgtg ttcgttatca ttgaggtcaa gctcgcgcat gattcgagca
       61 tgccagatgc tcgcccagcc ttcgttcatg atctttgtct gcatctgtgg aacgaaatac
      121 tccatctcgt cgtgaaccat cgcgactgca tcgcgctgcc acgccgcaag ggttggcgag
      181 ttcttcatga ggtagaaaag gagatccttc tccggaaggc gttccctgac gggcctctcg
      241 ttttcgttcg cctgatcgcc tcgatttagt tcacgtgttt ctcgttcatt tttgtccaac
      301 agccacaggt catcgtaagg cccatccttg tgttgatgct cggcacgtcg cttttcttcg
      361 gcggccgaga tttctcgctt gatgaagaaa tacgggtcga tgtgttcttc gatggccagc
      421 actgcgtcca ggaagcgctc gacgtttttt cgcccgtact taaactcata ctccatcatg
      481 cgttgagcat gggtggaaac actttcaacc atgcggcgat tggttttaga gaagtaagtg
      541 ttgtttctga agaagtcgac gtgcccgagc acatgggcaa tcaccatttt gttttggacg
      601 ggactattcg tttcgagcaa aaagccatag gccggattcg tattgataac aacttcgtaa
      661 atctttgaca aaccgaagtc gtacatcgtc ttcattcgtt gataggcttt accaaaagtc
      721 caatgcgagt agcgaccggg cagagcgtat gaaccaactt catacatcac tggcgccggg
      781 acgatttcaa agttggtagg ataaggatcc aggccaaagc cccgggcgac ttcccaaatt
      841 tgatcgacag cgacttcgag atctcttatt tccaggtcga gcataattat ggtgtctcta
      901 ctccccgtct cccaaaaaac tccttcagcg ccgggtacac atcctccttg tcgtcgatcc
      961 gcacgcccac aaagtgttcc ttgttttgca atcggtcgct aaagatcgaa aggagagcgc
     1021 ctgacgaacg gcgataactc gaggatccct cttcgccaat ctcgccgtaa ccaaacaggt
     1081 tgcagatctt gatcaactcg tctgcaagtt tcacggcttc ttcgttgtca gagtagtagt
     1141 tgtcgccgtc ggaaaagtga aaagggtaga tattccagtc ttcaggtcga tagcgctgct
     1201 tgatgatgtc gagcgcgagt tgatatgcgg acgacacgac ggtgccgccc gactcacctt
     1261 gagtgaaaaa ctgttcttcc gtgacttcct ttgcttcggt gtgatgggag atgaacacga
     1321 tgtcgacgtt gtcgtactt
//
LOCUS       DATCGC010000635         1129 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_176764, whole genome shotgun sequence.
ACCESSION   DATCGC010000635 DATCGC010000000
VERSION     DATCGC010000635.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1129)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1129)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1129
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176764"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1001)
                     /locus_tag="VIJ87_06005"
     CDS             complement(<1..1001)
                     /locus_tag="VIJ87_06005"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEY5444016.1"
                     /translation="MEEIFGPDGLIAQSHPEYEHRPGQIEMARAVLRAFEEQRHLIVE
                     AGTGTGKTLAYLVPAVASALAGRGRVIISTGTKNLQEQLMEKDIPFLQNILPRRFAAT
                     YMKGRSNYLCLNRLARAEGSPVLEGLEEVDYFEEVCDWSKETQIGDRAELSNLPESLS
                     FWRHIDARPDTCLGQKCPDFDPCFITRMRDRAKESDIVVVNHHLFFADLALRNGNYGS
                     VLPDYTAVILDEAHLIEDVASEYFGSQVSNYQIDELVRDISMLRLEEIEVDREVTRSA
                     ERLSRFGDEFWMGFRGGRGEEGRYPLNPGTFARRNIDGEFEATPLGDLYSALDGSINR
                     "
BASE COUNT          279 a          288 c          287 g          275 t
ORIGIN      
        1 cggttgattg agccgtcaag cgctgaatag agatcgccga gcggtgttgc ctcaaattcg
       61 ccgtcgatgt ttcgcctcgc aaacgtgcca gggttaagtg gataccggcc ctcttctcca
      121 cgaccgccac gaaaacccat ccaaaactca tctccaaagc gagacaatcg ttcggctgat
      181 cttgttacct cccgatcaac ctcaatctct tcaagccgca acatgctgat gtcgcggacg
      241 agttcatcga tctggtaatt cgaaacttgt gagccgaagt attcggaagc gacgtcttca
      301 attaggtgag cttcgtcgag aatcactgcg gtgtagtcgg gcaatacgga cccataatta
      361 ccgttgcgca aagcgaggtc ggcaaagaac agatgatgat tcaccacaac aatgtcagat
      421 tctttggcgc gatcgcgcat gcgtgtgatg aaacaaggat cgaagtcagg acatttttgg
      481 cccaggcacg tatccggacg ggcatcaata tggcgccaga atgaaagcga ctcgggcaga
      541 ttcgacaatt cagctcggtc accaatctga gtctctttcg accaatcaca gacttcttcg
      601 aagtagtcga cttcctccaa cccttcaagc accggagatc cttcggcacg tgcaagccgg
      661 tttagacaaa gatagttgct gcgtcccttc atgtaggtag cggcgaaacg ccgcgggagg
      721 atgttttgga gaaacggaat gtctttctcc atcaactgtt cttgaagatt ctttgttcca
      781 gtggaaatga tcactcgacc acgtccggcc aacgcggagg caaccgcggg aactaaatag
      841 gcgagtgtct tgccggtgcc tgtcccagct tcgacgataa gatgacgttg ttcttcaaaa
      901 gcacgcagaa cggcgcgggc catttcaatc tggccaggtc tatgttcgta ttcgggatga
      961 gactgggcga ttaggccgtc aggtccaaaa atttcttcca tgaatgtcta tctaactaag
     1021 agtctaggaa cctctgatta aatgcaagtt gcctcattcg tgtttgttgg tgtgacttcg
     1081 tggatcgttc tttttttgcg gcggaggaaa cgatccacga aatcacact
//
LOCUS       DATCGC010000636         2060 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_311096, whole genome shotgun sequence.
ACCESSION   DATCGC010000636 DATCGC010000000
VERSION     DATCGC010000636.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2060)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2060)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2060
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_311096"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..745)
                     /locus_tag="VIJ87_06010"
     CDS             complement(<1..745)
                     /locus_tag="VIJ87_06010"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HEY5444017.1"
                     /translation="MEQRLQKLIAAAGIASRRHAEDLISSGKVTLNGKVVTELGTKAD
                     PDKDHIKVNGKLINPKLKAREKTYVLLNKPKGYLSSVFDQEGRPLVVELLPPALGKLH
                     PVGRLDFNTEGLLILTNDGDLTNFVTAARNRVEKVYEVKVKGVPTDGAIARLRRGVTL
                     DDGTRTAPAKIKFLQDTDTNAWYEVLLHQGRNQQVRRMFEMIGHSVVKLRRVRIGFLT
                     DETLKPGYWRYLAPAEVSRLMRNRDDRKKP"
     gene            complement(835..1536)
                     /gene="scpB"
                     /locus_tag="VIJ87_06015"
     CDS             complement(835..1536)
                     /gene="scpB"
                     /locus_tag="VIJ87_06015"
                     /inference="COORDINATES: protein motif:HMM:TIGR00281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HEY5444018.1"
                     /translation="MATNEEIENQEPAESPDEAALNEEASRELAAMVAEVEAATGAES
                     GSEEEEDPNVAPQSQAERSGIIEALIFVSDEPLTLKTIAGVLKEEKALVEESVKALAE
                     EFNARNGGLQLREVAGGWQFATRPEHHEYVRRLLRTRPSAKLTIASLETLAVIAYRQP
                     VTVPEILEIRGVQSPSAIKTLLDKKLIVAKGRKEAVGRPMMYGTSKDFLLQFGLKDLT
                     ELPSVEDFQDLSGGS"
     gene            complement(1540..>2060)
                     /locus_tag="VIJ87_06020"
     CDS             complement(1540..>2060)
                     /locus_tag="VIJ87_06020"
                     /inference="COORDINATES: protein motif:HMM:NF014654.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="segregation/condensation protein A"
                     /protein_id="HEY5444019.1"
                     /translation="MAATLIELKTKMLLPRDPLAAPDELEDPRSELVNQLLEYQKYKA
                     AAEMLWSRATVEQAVFRRAEIETDKNNPEVAVGVFDLLKVFQDILARHKEEVMMEIER
                     EEISMTEMLERLRNMVMSASELNLRVFFERARSRRELVLAFLSILELVRTTEIKLFQR
                     ETFGDIVARVAG"
BASE COUNT          450 a          565 c          489 g          556 t
ORIGIN      
        1 gaggcttctt ccggtcgtct cgatttctca ttaatctact gacttcagcc ggcgccagat
       61 aacgccagta accaggctta agagtctcat cagtcaaaaa gccaatacgt actcgacgaa
      121 gcttaaccac tgaatggccg atcatctcaa acatgcggcg cacttgctga ttgcgcccct
      181 ggtgcaacag gacttcgtac caggcatttg tatcagtgtc ctgtagaaat ttgattttcg
      241 cgggcgctgt tcgtgtaccg tcatcgagag ttacacctcg tcgcaaacga gcgatcgcgc
      301 catcagtcgg cacgccttta actttaactt cgtagacttt ctcaacgcgg tttctggccg
      361 ccgtcacaaa gttggttaga tctccatcgt tggtaagaat cagaagtcct tcggtgttga
      421 aatccaaacg accaacggga tgaagcttgc caagcgcagg aggaagcaac tcaaccacca
      481 gcggacgtcc ttcctgatcg aaaacgctgg agaggtagcc tttcggtttg tttagcagga
      541 cgtacgtttt ctcgcgagct tttaacttcg ggttgatgag ctttccgttg accttgatgt
      601 ggtctttgtc tggatctgct ttagtgccga gctcggttac aaccttgccg ttgagtgtaa
      661 ccttccccga gctgatgagg tcttccgcat gtctacggga ggcaatcccc gcggcggcga
      721 ttagtttttg aagtcgctgt tccattgtag gtagtgaatc gtaaatcgtt aatcgtaaat
      781 cgagggtgga aatgtaaatc gacgattaac tattcacgat ttacgatcca cgacctacga
      841 tccgccgctg agatcctgga agtcttcaac actcggcaat tctgtaaggt ctttgagtcc
      901 aaactgaagc aggaagtctt tcgatgtgcc gtacatcatc ggtcgaccaa cggcttcttt
      961 tcttcctttg gctactatca gtttcttgtc gaggagagtt ttgattgctg aaggtgattg
     1021 cacgcctcta atttcaagaa tctcagggac cgtaactggc tgacggtaag cgatcactgc
     1081 caacgtctcc agggaagcaa ttgtcagttt agcgctgggc cgtgttcgca ataagcgacg
     1141 aacgtattcg tgatgctccg gacgagttgc aaactgccaa ccgcccgcga cctcacgcag
     1201 ttgaagaccg ccgttgcgag cattgaattc ctcagccagc gctttgacag actcctctac
     1261 cagggccttc tcttccttca acacgcccgc aattgttttg agagttagcg gttcatccga
     1321 tacgaagatc aaagcctcga taatgccgga gcgctcagct tgactctgcg gcgctacgtt
     1381 cggatcctct tcctcttcgg acccactctc cgcacccgtc gccgcttcaa cttcagcaac
     1441 catggctgca agttctcggc ttgcctcttc attcagcgcg gcttcgtccg ggctctccgc
     1501 cggttcctga ttttctatct cttcgttcgt tgccattctt tagcctgcca cacgcgcgac
     1561 aatgtctcca aaagtttcgc gctgaaataa tttgatctcg gtggttcgca ccagttcgag
     1621 tatcgataag aacgcgagta caagttcacg tcgggatcgc gcccgctcaa agaacactcg
     1681 caggtttaac tcgctcgcgg acatcaccat gttacgcaac cgttcaagca tctctgtcat
     1741 ggaaatctct tcacgttcga tttccatcat tacttcttct ttgtgtcgcg ccaggatgtc
     1801 ctggaaaact ttcaaaagat caaaaactcc cacggcgact tcaggattgt ttttgtctgt
     1861 ctcgatttct gcacgtcgaa agactgcctg ttcaacggta gctcgagacc aaagcatctc
     1921 cgccgcggct ttgtacttct gatattcgag taactgattc acgagctccg agcgtggatc
     1981 ttcgagttca tccggcgccg caagcggatc tcgcggcagc agcatcttgg tctttagttc
     2041 aattaaggtg gccgccatca
//
LOCUS       DATCGC010000637         1173 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_142043, whole genome shotgun sequence.
ACCESSION   DATCGC010000637 DATCGC010000000
VERSION     DATCGC010000637.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1173)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1173)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1173
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_142043"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            13..>1173
                     /locus_tag="VIJ87_06025"
     CDS             13..>1173
                     /locus_tag="VIJ87_06025"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEY5444020.1"
                     /translation="MGTVAYMSPEQSRGQETDARTDIWSFGCVLYEMLTHQQPFPGET
                     MPDVWANIINAEPASILVHRSDTPADLERIIARTIRKNREERYQSAKELFNDLQQLQT
                     RLLVESEIIRSGSGQSIAQIQPSPFFNSIAVLPFANLSAEKDNEYFSEGLTEEIIMNL
                     SKLQMLKVIARGSTMHYVKEGKTHKQTAGDLGVQYLLEGSVRRQGRDLRITAQLIDAL
                     RDVYVWSETYRGTIADIFDIQEKVAVEIVQALQLRLSPDEKQNLKKRFTENTGAYQLY
                     LQGRFFWNKRSEEGLKTAIKYFEQAIENDPHYALAWAGIADSYSLLGEFGNIPRKELY
                     PKAKAAVEKALEIDNRLAEVHTSLANLLMFTKWDWVNSAKEFKLALELNPNYA"
BASE COUNT          339 a          262 c          305 g          267 t
ORIGIN      
        1 ctgaacatga tcatgggaac ggttgcgtat atgtcgcccg agcaatcacg gggccaggag
       61 accgatgcac gaacagacat ttggagtttt ggttgtgtgc tttatgaaat gctgacgcat
      121 caacaaccat ttccgggaga aacgatgccg gatgtatggg caaacattat taatgcagaa
      181 ccggcttcga tcctcgtaca tcgcagcgac acgcctgccg accttgagcg catcatcgcc
      241 aggacaatac gtaagaatcg agaggagcgc taccagtccg cgaaagaatt gttcaatgat
      301 ctgcagcagt tgcaaactcg attgttggtt gaatctgaaa tcattcgcag cggatcaggt
      361 cagagcattg cccaaattca accgtctcct ttttttaatt caatagcagt gttgccgttt
      421 gcgaatctca gcgctgagaa ggacaacgag tattttagcg aaggcttgac agaagagatc
      481 ataatgaatc tctccaaact gcaaatgctc aaagtgatcg cgcgcggctc aactatgcac
      541 tacgtgaaag aagggaaaac ccataagcaa accgctggcg atctcggtgt gcagtatctg
      601 ttggaaggaa gtgtgaggcg acaaggtaga gatctaagaa ttactgcgca actgattgac
      661 gcgttgcgtg acgtctacgt gtggtcggaa acctatcgcg gcactatcgc ggatattttt
      721 gacattcaag agaaggtcgc ggtggaaatc gttcaagcac ttcaactccg actgtcccct
      781 gacgaaaagc aaaatctgaa gaagcgcttc acggaaaaca ccggggctta tcaactttat
      841 ctacagggtc gtttcttctg gaacaagaga agtgaagaag gactaaaaac cgccattaag
      901 tatttcgaac aggcaatcga aaacgatccg cattatgcgc ttgcgtgggc cggaattgcc
      961 gactcgtaca gtttgttagg cgaattcgga aacattccgc gtaaggagtt atacccgaag
     1021 gcgaaggcgg cagttgagaa agcactggaa attgataatc ggctggcaga agtccacaca
     1081 tcgcttgcga atctactcat gtttaccaag tgggattggg tgaactccgc gaaggaattc
     1141 aagctggcgc tggaattaaa tccgaactat gca
//
LOCUS       DATCGC010000638         1304 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_142048, whole genome shotgun sequence.
ACCESSION   DATCGC010000638 DATCGC010000000
VERSION     DATCGC010000638.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1304)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1304)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1304
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_142048"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            512..>1304
                     /locus_tag="VIJ87_06030"
     CDS             512..>1304
                     /locus_tag="VIJ87_06030"
                     /inference="COORDINATES: protein motif:HMM:NF012407.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate/isopropylmalate family dehydrogenase"
                     /protein_id="HEY5444021.1"
                     /translation="MYLSVGWEMRGRQWAFFATLCYVYHGTAQNNVRCIDLMTKQRIA
                     VIPGDGIGKEVVPEGVRVLDAAATKFNIELQWDHFDWNCDYYLKHGTMMPENWKDQIG
                     RHDAIFFGAVGWPALVPDHISLWGMLVKLRREFDLYVNLRPVRLFQGVPAPLANRKPG
                     EIDFYIVRENTEGEYSSIGGRVFSGTPREIVIQESVFTRSGVDRVLKFAFELAEKRPQ
                     KHLTSATKSNGISISMPFWDERVVHMSTKYPTIRVDKYHIDILAAH"
BASE COUNT          324 a          295 c          356 g          329 t
ORIGIN      
        1 atccgaaact gattacttct tggctgttgc cgatgtacag gtgactttcg tcaaagacga
       61 taagggtcag gtgacggagg ccattcttca tcagaacggc cggaacctga cagcaaagaa
      121 gatcaagtaa ggtgatgact gtgctccacg agttcggcag tttcatcaga cgaaaacgac
      181 atcttccaac tgacgctaag cttcatggca gggaagcttc ggttcgtagt gtttgtaata
      241 ccgtttttct caatcacagt atccttgagt ctcccgaaac ggatcaaaag ctcggtcgtg
      301 catgatgatg tcggaaacga gatgtcaggc tggtgtgtga actactccgt agaaacaaat
      361 caattagtaa tgcgcatgag ttccaaatag ggaaatcatc agtcactctt ttctcatggg
      421 cagtagacgg ggtccgtctg aagcggagac ccgtgtcgcc tgggaacgca ctcgcacgtt
      481 ttgatatgaa tctcggcagc atttcggcaa aatgtatctg agtgtcggct gggaaatgcg
      541 tggacgtcag tgggcattct tcgcaactct ttgctacgtc taccacggaa ccgctcagaa
      601 taacgtaagg tgtattgatt taatgactaa gcagaggatt gcggtaatcc ccggagacgg
      661 tattggcaaa gaggtggtac ccgagggcgt tcgcgtactc gatgctgcag ccacgaaatt
      721 caatattgaa ttgcagtggg accattttga ctggaactgc gattactacc tgaagcacgg
      781 cactatgatg ccggagaact ggaaagatca gatcggccgg cacgacgcga ttttctttgg
      841 tgcagtaggt tggcctgctc ttgtacccga tcacatttca ctgtggggaa tgctcgtcaa
      901 gcttcgaagg gagtttgacc tctacgtgaa tttgcgtccg gtgcgactct ttcagggagt
      961 tcctgcgcca ttggctaacc gcaagccggg cgagattgat ttctatatcg tgcgtgaaaa
     1021 cactgaaggg gagtattcct ccatcggcgg tcgcgtgttt tcagggacgc ccagggaaat
     1081 agtcattcaa gagagtgtgt ttacaaggag tggtgttgac cgggtgctga agtttgcatt
     1141 cgaacttgcg gagaagcgcc cgcaaaagca cctcacgtct gccactaaat ccaacgggat
     1201 ctctatttca atgccgttct gggatgaacg tgtggtgcac atgtcaacga agtatccgac
     1261 tattcgcgtg gataagtatc atatcgatat cctggccgca catt
//
LOCUS       DATCGC010000639         1379 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_341499, whole genome shotgun sequence.
ACCESSION   DATCGC010000639 DATCGC010000000
VERSION     DATCGC010000639.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1379)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1379)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1379
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_341499"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..258
                     /locus_tag="VIJ87_06035"
     CDS             <1..258
                     /locus_tag="VIJ87_06035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444022.1"
                     /translation="RRVVVFEVDRAETLTALRVVRFYVLELCTWLFAFCSLVEGFTVD
                     LESMAKPLVCYEQNTKIKALSSNPTANTHKKAGSIRSTRSG"
     gene            complement(232..>1379)
                     /locus_tag="VIJ87_06040"
     CDS             complement(232..>1379)
                     /locus_tag="VIJ87_06040"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HEY5444023.1"
                     /translation="LMKVPSRMVVMENLPPKRTGGAQIDTADVRYIGNSSDYFRNAHV
                     PEIADADYRQTPVSLLGARQAVNLAKYAGAASDAADELQAAEDELQAAEKAWRFNQPL
                     PEIDVLARKATSTGQRAEEVAMVRRAARVRRDEIQRRDDAVRTAEKSAEESQRENDQL
                     RASLEKERRARENAEREAGNANDQLREKRVEIARLRDELQQVRTESDAARIKLARLEG
                     EKQAETDRLEADRRSAERKNAESALKGALAKFGTLKETSSGFRLVLSESIWKDARAAA
                     LSTAASAKLEPLAALLANNPDYQILIEAYTDNKGDEVSLQQLTQERARVLSDHFQTAG
                     VDPTKIQANGMGASNPVVPNTTLANRAKNRRVEITFTSPLPRTSAAN"
BASE COUNT          280 a          364 c          345 g          390 t
ORIGIN      
        1 cggcgagttg tagtatttga agtggatcga gcggagacat tgacggcgtt gcgagtagtg
       61 cgcttttacg tacttgagct ttgtacttgg ctctttgcgt tttgttcgct agttgaaggc
      121 ttcactgttg atcttgaatc aatggcaaaa cccttggtct gttacgaaca aaacacaaag
      181 atcaaagcac taagctcaaa cccaacagcc aacactcaca agaaggccgg ttcaattcgc
      241 agcactcgtt ctgggtaaag gcgaagtaaa tgtaatttct acgcggcggt tcttagctct
      301 gttcgccagt gtcgtatttg gcactactgg atttgatgca cccattccgt tggcctggat
      361 cttggttgga tctactccag cggtttgaaa atgatccgac aatactcgag ctcgttcctg
      421 ggtcagttgt tgtagcgaga cctcgtcgcc tttgttgtcg gtataagcct cgatcaagat
      481 ttggtaatca ggattgtttg ccagtagtgc ggcaagcggt tcgagcttcg ccgaagccgc
      541 cgttgatagt gcggcagcac gagcgtcttt ccaaatagat tcggacaaaa caagtcgaaa
      601 gccgctgctg gtttctttta gagtaccaaa cttggccagt gctcctttta acgcactttc
      661 agcatttttg cgttctgccg agcgtcgatc tgcttcaagt cgatctgttt cggcctgctt
      721 ctcaccttca agacgggcaa gctttatccg agccgcatcg ctttccgtac gaacttgctg
      781 caactcgtca cgcagacgcg ctatttcaac gcgcttctct cgaagttgat cattagcatt
      841 acctgcttcc ctttctgcgt tctcacgagc tctccgttcc ttttcgagtg aggcgcgaag
      901 ttgatcgttt tcacgttggg attcctctgc acttttctcc gcggtgcgca ctgcgtcgtc
      961 gcgccgttga atctcgtcac gacgaacccg tgcggcacgt ctcaccatcg cgacttcttc
     1021 cgctctctgc cctgttgatg ttgctttacg cgcgaggacg tcaatctctg gcaatggctg
     1081 attgaaccgc catgcttttt cggcagcctg tagttcatct tccgctgcct gcaattcatc
     1141 tgcagcgtcg gaagcagcgc cggcatactt ggcaaggttt accgcttggc gcgcacccag
     1201 taatgagacg ggagtctgcc ggtaatcagc atccgctatc tcaggcacat gagcattgcg
     1261 aaaatagtcg ctggagtttc cgatgtatcg aacatcggcg gtatcaattt gagcgccgcc
     1321 agtccgcttc ggagggagat tttccattac gaccattcgg cttggaactt tcattagaa
//
LOCUS       DATCGC010000640         2510 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_42362, whole genome shotgun sequence.
ACCESSION   DATCGC010000640 DATCGC010000000
VERSION     DATCGC010000640.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2510)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2510)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2510
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42362"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..269)
                     /locus_tag="VIJ87_06045"
     CDS             complement(<1..269)
                     /locus_tag="VIJ87_06045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444024.1"
                     /translation="MAAFATTYKRLYDGVNYRLRTFADERFADYCRPTSIAISMTERC
                     NARCIHCDIWKNRGPEKGLTREQWKTMLCELRSWLGPVQVTFSGG"
     gene            615..1322
                     /locus_tag="VIJ87_06050"
     CDS             615..1322
                     /locus_tag="VIJ87_06050"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEY5444025.1"
                     /translation="MQNAADLKANLRAEPLNLPKPKIRKASGFGVSGLSRVSARGSVL
                     FSEGTPSQGVYLLRSGSAKLSISSEQGRVVILRVALPGDLLGVSAVLSGAPYEATAET
                     LEPCRVDFITRDEFILLADSNKDFSDDVFHAIKQELTELLERTRLLLLSETAAEKLAR
                     LLLKWADEDGNVVADGTRVNINFTHEEVAQMICTSRETVTRLFGEFSRRGLIEFDGNT
                     MLLRDGLALTKVCLKMK"
     gene            1383..1706
                     /locus_tag="VIJ87_06055"
     CDS             1383..1706
                     /locus_tag="VIJ87_06055"
                     /inference="COORDINATES: protein motif:HMM:NF024834.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEY5444026.1"
                     /translation="MIKTIERLLLATMLLAAFVALSLSSAGARSQDQFDAAGTYKAKC
                     VACHGPKAEKKFDCAKADDEHTQTILKGKKMEKPPNMPGFEEKGINADQAKALLEYMK
                     SLKTQ"
     gene            complement(1840..1962)
                     /locus_tag="VIJ87_06060"
     CDS             complement(1840..1962)
                     /locus_tag="VIJ87_06060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444027.1"
                     /translation="MDPSFPGMAVAGASSAGGLIEKQKMLARQAKTIGEPMRLV"
     gene            2090..>2510
                     /locus_tag="VIJ87_06065"
     CDS             2090..>2510
                     /locus_tag="VIJ87_06065"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5444028.1"
                     /translation="MIRWSLGEALRGWGYEPVQADTAGAGLAAFDADQPAAILLDINL
                     PDGSGLEVLRQIRHRQPDAIVIMITANVLVDETIAALRGGAYDFIGKPINLEELQVAI
                     RNGIEANRLRREVNTYRRERALEFNFSQIIGESPAMRE"
BASE COUNT          654 a          600 c          659 g          597 t
ORIGIN      
        1 tcgccgccgc taaacgtgac ttggactggt ccaagccaac tgcgcaattc gcaaagcatc
       61 gttttccact gctcgcgagt taatcctttt tcagggcccc gattcttcca gatgtcacag
      121 tgaatacacc ttgcgttaca gcgctccgtc attgagatcg cgattgaggt cggacggcaa
      181 taatccgcga agcgctcatc tgcgaatgtg cgaagacgat aattcacacc gtcgtaaaga
      241 cgtttgtatg tcgtagcgaa ggcagccatt gttctgtttt tagcgatagt cgtgatcaga
      301 atctggttct agcaaaccaa gatcagtatc gaaagcaatc atttagccac tcgaaaaaag
      361 cgctaatact taagtgtttg acctgagtcg ccacacgtaa gtgcggaata cctcgcggga
      421 cttgccctat tgaaacggat atatccactc aggcaatcaa ttgcggattc tcacccagat
      481 ggtaattgaa ctgcggaaac ttcctcagtc gtggtccagt taagatttaa ttctccagaa
      541 aacaaagaaa cacttctagt ggcatgaacg tcgcaacgcg tttggcggaa gttgtttgag
      601 aagggatgga gtggatgcag aacgcagccg atctaaaagc gaaccttcga gcggaacccc
      661 tgaatctccc gaagcccaaa attagaaaag cttcgggatt cggtgtatcc ggactcagca
      721 gagtgagcgc ccgcggctca gtgttgttca gcgagggcac cccttcgcag ggtgtttacc
      781 tgcttcgttc cgggagcgcc aagttatcga tttcgtccga gcaaggcagg gttgtaatcc
      841 tcagggtagc cttaccaggt gacctgttag gggtcagcgc agtgttaagc ggagcgcctt
      901 atgaggcgac cgcggaaact cttgaacctt gtcgagtcga cttcatcaca cgagatgaat
      961 tcattttgtt ggccgacagt aacaaagatt tcagtgacga tgtgttccac gcgatcaaac
     1021 aagaactaac tgaactcctg gaacgaacca gactgctttt gttatcggag acggcagccg
     1081 agaagttggc ccgcctgcta ctgaagtggg ccgatgaaga tgggaacgtc gtggcggacg
     1141 gaacaagagt gaatattaac ttcactcatg aagaagttgc tcaaatgatt tgcacttcgc
     1201 gtgagaccgt cactcgtcta ttcggagaat ttagtaggcg aggattaata gagttcgacg
     1261 gtaatacgat gctcctgagg gatggcttgg ctcttacgaa agtttgtcta aaaatgaaat
     1321 agcccaactt tgcgtgggtg tcgcttatgc gaaaatttcc taatcgatga aaaggtccag
     1381 caatgataaa aacaattgaa agattacttc ttgccacaat gttgttagca gcttttgttg
     1441 cgctgagctt aagttccgct ggcgctcgct cacaggatca attcgacgcg gcaggcacct
     1501 acaaagcaaa gtgcgtcgca tgtcatggcc caaaggctga gaagaaattt gattgcgcga
     1561 aggctgatga tgaacacact cagaccatcc tcaagggcaa aaagatggag aagcccccta
     1621 acatgcccgg tttcgaagag aagggtatca acgcagacca ggcgaaggcg ctacttgagt
     1681 acatgaagtc cctgaaaact cagtgagccg gtcggacatc agttatcgag caatctcccg
     1741 caaaccctta ttgctttgca ggagactggc ttcggtttga aaggggcctg tgagctaagc
     1801 gatcgaactg atctccaaga ctccacgtct cgttcacaac tacacgagcc tcattggctc
     1861 gccgatagtt ttggcttgtc ttgccagcat cttctgtttc tcaatcaagc caccggcact
     1921 cgaagcaccc gctactgcca tccccggaaa tgacggatcc atttgcggag actacggtga
     1981 ggtaggatca ttgtcattct ggatataatc aacgagaaac ttcaattgac tggagtgtgt
     2041 agggctgaaa gatcacaaag acaaaatcct ggttgttgac gacgaaaaga tgattcgttg
     2101 gtcactaggc gaggctttgc gtggttgggg atacgagccc gtacaagcag ataccgccgg
     2161 tgccggattg gcagcctttg atgctgacca accggcggcg atccttctcg atattaattt
     2221 acccgacggc tccggtctcg aggtcttgcg gcagattcgg catcgtcagc cggatgcaat
     2281 tgtcatcatg attactgcga acgtgcttgt tgacgagacg atcgctgcat tacgaggtgg
     2341 tgcgtacgac tttatcggta aaccgatcaa tctcgaagag ctccaggttg cgattcgcaa
     2401 tgggatcgag gcgaatcgtt tacgtcgtga agtaaacaca tatcgacgcg agcgcgcact
     2461 ggagttcaat ttcagtcaga tcattggcga gtcgccggca atgcgcgaga
//
LOCUS       DATCGC010000641         1617 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_142099, whole genome shotgun sequence.
ACCESSION   DATCGC010000641 DATCGC010000000
VERSION     DATCGC010000641.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1617)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1617
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_142099"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(59..>1617)
                     /locus_tag="VIJ87_06070"
     CDS             complement(59..>1617)
                     /locus_tag="VIJ87_06070"
                     /inference="COORDINATES: protein motif:HMM:NF014026.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HEY5444029.1"
                     /translation="FLPSFEAAVKEAGVMSVMPSYNEIDGVPSSINKWLLNDLLRKEW
                     GFQGYLTSDYYALTQLGELHHVVKDKAEAARLALETGIDVETPDPDVFLNLVPLVKEK
                     KVSEAMLDTAVSRVLRAKFLLGLFENPYVDEARTVQVTNSASNQALAAEAARRSIVLL
                     KNDNNLLPLNRNAIKSIAVIGPNAERVHLGGYSDNPGRGVSVLQGIKDKVGGTIKVNF
                     AEGCKITREGGNWWADTSHLSDPAEDKKSIAEAVETAKASDVALLVLGSNEDTNKEGW
                     ADNHLGDRDTLDLIGAQNDLARAVLATGKPTIVLLINSGALSINYIAENVPAILEGFY
                     LGQETGVAVADVLFGDYNPAGKLAISFPRTVGQLPIYYNQKPSGRRGYVFASKDPLFP
                     FGYGLSYTTFSYSAPTISPAQITPDGKATVSVTVTNTGKRAGDEIVQLYIHDLVSSVT
                     RPIKELKDFRRISLAPGETKKIEFVITPDKLWFYNMQMKRVVEPGWFDIMVGPSSVTN
                     QTVKLEVTEK"
BASE COUNT          350 a          423 c          415 g          429 t
ORIGIN      
        1 gacgcagatg acgcagaggt tgcgcagaga atcgaaatca atcgagggat gcttaccttc
       61 acttttcagt tacctcaagc ttcaccgttt gattcgtcac ggagctcgga cccaccatga
      121 tgtcgaacca gcccggttcc acgacgcgct tcatttgcat attgtagaac cagagtttgt
      181 cgggcgtgat tacaaactcg atcttcttgg tttcacccgg cgccaatgag atgcgacgaa
      241 aatctttgag ctccttaatc ggacgcgtca ccgaactgac cagatcgtga atgtaaagtt
      301 gaacgatttc atctcccgct cgtttgccgg tattcgtcac agttacgctg acggttgctt
      361 ttccatcggg cgtgatctgc gctgggctta tcgttggcgc agagtaggag aaagttgtgt
      421 aactgagtcc gtaaccaaac gggaagagcg gatctttgct ggcaaacaca taaccgcgtc
      481 gtccggaagg cttctgattg taatagattg gcaactggcc gacggttcgt ggaaaactga
      541 ttgcgagttt tcccgccggg ttgtaatcac caaacaaaac atctgcgacc gccacaccgg
      601 tttcctggcc aaggtaaaac ccttccagaa ttgctggtac gttttcagcg atgtagttaa
      661 tcgagagagc gccgctatta ataaggagca ctattgttgg ttttccggtt gcgagcaccg
      721 cacgcgcgag gtcattttgt gcgccaatta gatcaagagt atcgcgatca cctagatggt
      781 tatcggccca accttcttta tttgtatctt cgttgctgcc gagtacgagc aacgcaacgt
      841 cggatgcctt tgctgtttcg acagcctcgg caatcgactt cttgtcttcg gctggatcgc
      901 tcaagtgcga agtgtcagcc caccaatttc cgccttccct ggttatcttg cagccttcgg
      961 caaagttaac tttgattgtt ccgccaactt tgtctttgat tccctggagc acgcttactc
     1021 cgcgtcccgg gttatcactg taacctccga ggtgaactcg ttctgcgttg ggcccgatca
     1081 ctgcgattga cttgatcgcg ttgcgattga gtggcaacaa gttgttgtca ttcttgagca
     1141 ggacaattga tcgccgagcg gcttccgctg ccagcgcctg gttgcttgcc gagtttgtta
     1201 cttgaacagt tcgcgcttca tcaacgtacg gattttcaaa gaggccgagc aaaaattttg
     1261 cgcgcaacac gcggctgacc gcagtatcga gcatcgcttc cgatactttc ttctctttca
     1321 ccaagggcac gaggttcagg aatacgtcgg ggtcgggagt ctctacatcg atgcccgttt
     1381 cgagcgccag gcgcgcggct tcggccttgt ctttaacaac gtgatgaagt tcgccgagtt
     1441 gagtcagcgc gtagtagtcg gacgtgagat atccctggaa tccccattcc ttgcggagca
     1501 gatcatttag cagccactta ttgatactgg aaggcacacc atcaatttca ttgtatgagg
     1561 gcatgacgct catcacgccc gcttctttca ctgcggcttc aaagctgggc aggaaag
//
LOCUS       DATCGC010000642         1168 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_442341, whole genome shotgun sequence.
ACCESSION   DATCGC010000642 DATCGC010000000
VERSION     DATCGC010000642.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1168)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1168)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1168
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_442341"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(31..1113)
                     /locus_tag="VIJ87_06075"
     CDS             complement(31..1113)
                     /locus_tag="VIJ87_06075"
                     /inference="COORDINATES: protein motif:HMM:NF019605.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY5444030.1"
                     /translation="MPHDETFFITGFPGFIADRLLERLAASNSNFILLVQPALLERAR
                     TKVAEIAERTGRSTADFRFVEGDISVPALGLNEIDQQVVRAETTRVFHLAAFYDLAVP
                     HDLALKINVEGTKNVNALTRTLPRLRHYHHVSTCYVAGKREGSILETELLHNAGFRNF
                     YEESKYLSELEVEALKVDLPVTIHRPAVVCGDSKTGETVKYDGVYFLIFYLLRWPGGL
                     SMMNIGNSEVCLNLVPVDYVVDAMSALAFDNDAIGKTLQLADPRPLTTHQLFNAITKS
                     INGSHSRMTAPRSWVKFLLMLPPSPKITGLPHHAVPYFFVKQTYDTTNAGVLLKRHGI
                     HCPPFESYVGKIVEFAEANPKIELRA"
BASE COUNT          299 a          303 c          292 g          274 t
ORIGIN      
        1 caagcccttc gactttcaaa gcacaaagtt ctaagctcta agctctatct tcggattcgc
       61 ttcggcaaac tccactatct tccctacata gctctcaaac ggtggacagt gaatgccgtg
      121 tcgcttgagc agtactccag cattggtcgt gtcataggtt tgcttcacaa aaaagtaggg
      181 tacggcgtga tgaggcagtc cggtgatctt gggtgacggc gggagcatga gaaggaactt
      241 gacccacgag cgcggagcag tcattcgtga atgactgccg ttgatcgact tcgtaattgc
      301 gttgaagagc tgatgagttg tgagcggccg tggatctgca agttgcaagg tcttccctat
      361 cgcgtcgtta tcgaaggcga gcgccgacat cgcgtctacc acgtaatcca ccggcaccag
      421 gttcaaacat acttcgctat tgccgatgtt catcatcgac aagccgccag gccaacgcaa
      481 tagatagaag atcaagaaat agacaccatc gtacttaact gtttcacccg ttttggaatc
      541 accgcagacg acagctggac ggtgaatggt tactggcaaa tcgaccttca acgcctccac
      601 ttccagttcg gacaggtatt tcgattcttc gtagaaattg cgaaagcccg cgttatggag
      661 aagttcggtt tcaagtatcg aaccttctcg ctttcccgcg acataacaag tggacacgtg
      721 atgataatgg cgaagacgag gcaacgttcg cgtgagagcg ttgacattct tcgttccctc
      781 aacgttgatc ttcaaagcaa ggtcgtgggg cacggctaaa tcgtaaaacg ctgcgaggtg
      841 aaaaactctt gtcgtctctg cccgcacaac ttgctgatca atctcattca gcccaagcgc
      901 cggtacacta atgtcgcctt cgacaaaacg aaagtccgcc gttgaccgtc cggttctttc
      961 cgcgatctcg gcaactttgg ttcgcgctcg ctcgagaaga gcaggttgaa ccaacaggat
     1021 aaaattactg ttggaggccg ccagccgctc gagtaggcgg tcggcaatga aaccgggaaa
     1081 accagtaatg aagaacgttt cgtcgtgggg cataactacg aagtaactat atccaaccta
     1141 aacgcgatag gtataatcct catccctc
//
LOCUS       DATCGC010000643         1190 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_442380, whole genome shotgun sequence.
ACCESSION   DATCGC010000643 DATCGC010000000
VERSION     DATCGC010000643.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1190)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1190)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1190
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_442380"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            91..987
                     /gene="era"
                     /locus_tag="VIJ87_06080"
     CDS             91..987
                     /gene="era"
                     /locus_tag="VIJ87_06080"
                     /inference="COORDINATES: protein motif:HMM:NF000908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HEY5444031.1"
                     /translation="MSTTTYHSGYVALVGRPNAGKSTLLNHLVGQKIAAVSNKPQTTR
                     FKIQGVITKPEGQIVLVDTPGVHQPGYELNRRMMSAVQDALLGVDLVCLIRDASSSTG
                     QGDRFVLDLIKRSGKPTLLLLNKIDKLEDKVALLPLMQWYQKEYDWREIVPISALKNE
                     MTDVLLESCLRHLPEGEPIFSEDELTDQSVRVLVSEIVREKLLHVTGDEIPYVTAVVT
                     ERFEEEREDFTRINCAIVVERASQKKIVIGKGASLLKEVGIRARRDIEHLLGHRVHLE
                     LFVKVEADWRNKDGLLDELGLS"
     gene            988..>1190
                     /locus_tag="VIJ87_06085"
     CDS             988..>1190
                     /locus_tag="VIJ87_06085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444032.1"
                     /translation="MNAPAKDTSWHALNVDLEPSSREAVEYALMEAGALGTVTNDLDD
                     GLLRVVGYFEVVPDREQVRSELM"
BASE COUNT          287 a          304 c          320 g          279 t
ORIGIN      
        1 agcctccctg gctttattgc tcttactagc ttcgctggct tttcaacgtg gtggtgaaca
       61 atggtcacga ccgtgagaca atgaggcatc ttgtccacta ctacttatca ctccggttat
      121 gtcgccctcg tcggtcggcc aaatgctggc aagtcgaccc tacttaacca tctcgtcggt
      181 caaaagatcg ccgcagtctc taacaaacct cagaccaccc gtttcaagat tcaaggtgta
      241 atcacgaagc ctgaagggca aattgtgctc gtcgatacac cgggtgttca tcaaccaggg
      301 tatgaactca accggcgaat gatgtctgcc gttcaggatg ccctactcgg cgtcgacctg
      361 gtctgcttga tccgtgatgc gtcttcctcg acaggccagg gagatcgttt cgtactcgat
      421 ctgatcaaac gttcagggaa gccgacgcta ctgctgctaa acaagattga caaactcgaa
      481 gacaaggttg cgttgctgcc tctgatgcag tggtatcaga aggagtacga ctggcgggag
      541 attgttccga tctctgcttt gaagaacgaa atgaccgacg tgctacttga aagctgtttg
      601 cgtcatctgc ccgagggcga accgatattt tccgaagatg agttaaccga tcaatcagta
      661 cgtgtgcttg tttccgagat cgtccgcgag aaactcctgc acgtaactgg cgacgagatc
      721 ccgtacgtga ctgcggttgt aaccgagcgc ttcgaggaag aacgcgaaga cttcacgcgt
      781 atcaattgcg ctatcgtcgt tgagcgagct tcgcagaaga agattgttat cgggaaaggc
      841 gccagccttt tgaaggaggt cggcattcgc gcacgacgcg acatcgaaca cctactcgga
      901 catcgtgttc acctcgagct ctttgtcaaa gtagaggcag actggcgaaa caaagatggg
      961 ttgttggatg aactaggact cagttgaatg aacgctccag cgaaagacac cagttggcac
     1021 gctttgaatg tcgacctgga accatcatcc cgggaagctg tcgaatatgc gttgatggaa
     1081 gcgggggcac tgggcacagt caccaatgat ctcgatgacg gactccttcg cgtcgtcggt
     1141 tacttcgagg tggttcccga tcgtgaacaa gtcagaagcg aactcatgga
//
LOCUS       DATCGC010000644         1601 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_108812, whole genome shotgun sequence.
ACCESSION   DATCGC010000644 DATCGC010000000
VERSION     DATCGC010000644.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1601)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1601)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1601
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108812"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..676
                     /locus_tag="VIJ87_06090"
     CDS             <1..676
                     /locus_tag="VIJ87_06090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444033.1"
                     /translation="LLHSRPAQYELIACHAGKTDPVHEKIIAKGFEQYAVPARGQADI
                     LITGIPDISPYNVYSILNPLLVQVMALGYHFNFYRNKPLLKKGGVMIVHHPCYDDFDH
                     QFHPSYIEFFNRLLPETRDAFVLREKYEQEFANNPSYVEMYRRGNAYHGAHPFFMWYW
                     GENGRQHVGKVIAAGAENAHVPGILGWERADNLTEAIAMARSYMGNSAEITMLHQPMI
                     GVADME"
     gene            792..>1601
                     /locus_tag="VIJ87_06095"
     CDS             792..>1601
                     /locus_tag="VIJ87_06095"
                     /inference="COORDINATES: protein motif:HMM:NF019605.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY5444034.1"
                     /translation="MKLSPTEIYQDRKIFLIGSTGFLGKVTLSMLLHRFPNVGKVYVT
                     VRARSQEESEARFWNHIITAPPFDPLRERYGSALEGFVRDKVVVKGGDIGETNLGYTE
                     EQAQEIADDIDIVINSAGNVTFNPTLESGLRTNVVGTQNVIAFARRMKRPTLVHVSTC
                     FVAGNRSGAVWESDSVLGYFPRKSEMPGVEFSVDREIEDCAKLADRVREEARDAMMTA
                     RFRELARTRLSEEGRDSDDPDALGLAVARERKVWTRTRLTDLGVERAAYWGW"
BASE COUNT          396 a          407 c          434 g          364 t
ORIGIN      
        1 actcctgcac tctcggccgg cacagtacga actgattgcc tgtcacgcag gtaaaacgga
       61 cccggtgcac gaaaagatca ttgccaaggg ttttgaacag tacgcggttc cagcgcgagg
      121 acaggctgac attctgatca caggcattcc tgacatttcg ccttacaacg tctactcgat
      181 tctgaatccc ctactcgtgc aggtgatggc gcttggttat cacttcaatt tctatcgcaa
      241 caagccgctg ctgaaaaagg gtggcgtcat gatcgttcat cacccgtgtt acgacgattt
      301 cgatcatcag tttcacccga gttacatcga gtttttcaat cgcctactgc cagagactcg
      361 cgatgccttc gtactccgcg agaagtatga gcaggagttt gccaacaatc ccagctacgt
      421 ggagatgtat cgacgcggta acgcctatca cggagcacac ccgttcttca tgtggtactg
      481 gggtgagaat ggtcgacagc atgtcggaaa agtaattgcc gccggtgctg aaaatgctca
      541 cgttcctggg attcttggtt gggaacgtgc agacaatctg acggaagcaa tcgcaatggc
      601 gagaagttac atgggcaact ccgccgagat cacgatgttg caccagccaa tgatcggcgt
      661 cgccgatatg gaataggaaa cattgtagat tgcagatcga agacttcaga ttgaacttgg
      721 cccaggctaa caatctgaaa tctgaaatct tcaatctgaa attgtcacga gcatcaggat
      781 cgtaaagagt tatgaagtta tcaccaacgg agatttacca ggatcgaaag atctttctga
      841 ttggcagcac cggctttctc ggcaaggtga cgctgagcat gctgctgcat cgctttccaa
      901 acgtcggcaa ggtttacgta acggtacgcg ctcgttcgca ggaagagtcg gaggcgagat
      961 tttggaacca catcatcact gcgcccccat ttgatccgtt acgtgaacga tacggctcgg
     1021 ctctcgaagg cttcgtacgt gacaaagtag tcgtcaaagg tggtgatatc ggtgaaacca
     1081 atctcggcta caccgaagaa caagcccagg aaatcgcaga cgacatcgat atcgttatta
     1141 actccgcggg caacgtcaca ttcaacccaa cactggaaag cggacttcgc acaaacgtcg
     1201 tcggcactca gaacgtcatc gcgtttgcgc gacgaatgaa acgacccact ctggttcatg
     1261 tgtcgacctg tttcgttgcc ggcaatcgct caggagcagt ttgggaaagt gactcggtgc
     1321 ttggatattt tccacgcaag tctgagatgc ccggtgtcga gttttcagtc gatcgggaga
     1381 tagaagactg cgcaaagctc gccgatcgag tgcgtgagga agctcgcgac gcaatgatga
     1441 ctgcgcgatt tcgcgagctg gcccgaacac gtttgagtga agaaggtcgc gattcggatg
     1501 acccggatgc gcttggcctg gcggtcgctc gcgaacgaaa agtctggacc cgcactcgcc
     1561 taaccgatct cggtgtagag cgtgcggcgt attggggttg g
//
LOCUS       DATCGC010000645         1087 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_42454, whole genome shotgun sequence.
ACCESSION   DATCGC010000645 DATCGC010000000
VERSION     DATCGC010000645.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1087
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42454"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..828
                     /locus_tag="VIJ87_06100"
     CDS             <1..828
                     /locus_tag="VIJ87_06100"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEY5444035.1"
                     /translation="FPFYDPEYTRWMSYSPVELIRFLQIPSVAKYEHIMVIRNDSGAL
                     RMDDVMDTGPDIQSYLAENPFRHGTRILFLGTSQMWGSGASSPNERIASRVSSLLNTG
                     ASGKNIYVINASQRGSNSFELLNRCKDHLYLFRPDLVILDLSNNDDARSFDKGLRSLL
                     EWTRSIHSKTLFILEPNSPEVDFGKGSVQTILPIGRIQDRHAIMRNISTQYHVPLLDL
                     NGYLTSDGVYDSGFLWWDLVHLTSYGQELAAEFIAKGIRDHFPSNFETILNETNDTR"
BASE COUNT          265 a          281 c          254 g          287 t
ORIGIN      
        1 ttcccctttt atgatccgga gtatacacga tggatgagct attctcccgt ggaactgatt
       61 cgatttctgc agataccatc tgttgcgaaa tacgagcata tcatggtcat cagaaacgat
      121 tccggcgctc tgcgaatgga tgacgtaatg gataccggac cggacataca gtcttatctg
      181 gctgagaacc cttttcggca cggaacaagg atacttttcc tcggcacttc acagatgtgg
      241 ggaagcgggg cttcctcccc aaacgagcgg attgcctcca gggtaagctc cctgctgaat
      301 accggagcga gcgggaagaa tatttatgtt atcaacgcaa gccaacgagg aagcaattct
      361 tttgaacttt tgaaccgctg caaggatcat ctatatctat tccggccgga cctcgttatt
      421 cttgatcttt cgaacaatga tgatgcccgt tcgtttgata agggacttcg ctccctattg
      481 gagtggactc gctccatcca tagcaagact cttttcattc tggagccgaa cagtccggaa
      541 gtcgacttcg gaaaaggcag cgtgcagacg attcttccga ttggccgaat tcaggatcga
      601 cacgcgatta tgaggaacat ctccacgcag tatcatgtgc ctctgctgga tctgaacggt
      661 tatttaacgt cagacggtgt ttacgactcc ggattcctct ggtgggatct cgtgcacctc
      721 acttcctacg gccaggaact ggcggccgaa ttcattgcaa agggaatcag agaccacttt
      781 ccctccaatt tcgagacgat tctgaatgaa accaatgaca cgcggtaagc gcgtcctccc
      841 tctcgcggat cttcggtgtt aggccaacct tcgtgatttc aaatttcaga tttactgatt
      901 tcaaattgaa gagcgattaa ctccggcctt taaacctcaa ctggcaagct tacacttgca
      961 tttctgatcg tattcctgaa atagatctat gcgcacgaaa gttgctgctc ccgcgaaggc
     1021 gagcgcgagc aatcctacaa gtccagcgat ctttattcta taccgatcgg gtctcgctat
     1081 catcctg
//
LOCUS       DATCGC010000646         1059 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_13264, whole genome shotgun sequence.
ACCESSION   DATCGC010000646 DATCGC010000000
VERSION     DATCGC010000646.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1059)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1059)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1059
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13264"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1059)
                     /locus_tag="VIJ87_06105"
     CDS             complement(<1..>1059)
                     /locus_tag="VIJ87_06105"
                     /inference="COORDINATES: protein motif:HMM:TIGR03026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003979 - UDP-glucose 6-dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HEY5444036.1"
                     /translation="LVAEFAANGFKGIGFEVDQNKADQINKGISYIGDVSSSKVKELV
                     DAGRLKATTDFNHLSECDAIIICVPTPLRKTKEPDVSYILAAAEEIQKRIRRGQLVIL
                     ESTTYPGTTNEVLLPMFEETGLKLDEDFLLAFSPERVDPGNPQFLTHNIPKVVGGVTP
                     ASTEVADLLYSQIVKDVHAVSSARVAEAAKLLENTFRAVNIGMANEMARLCYALNIDT
                     WEVIRAAATKPFGFMPFYPGPGIGGHCIPLDPHYLSWKARQHGFDSRFISLAEEVNSR
                     MPEHVVQLVADGLNDERKAMKGSRVLLLGVAYKKDIDDVRESPALSIIDRLRVKGADV
                     RYHDPFVKEVSFDEAHTH"
BASE COUNT          251 a          283 c          274 g          251 t
ORIGIN      
        1 cgtgtgtgtg agcctcgtca aagctaactt ccttcacaaa cggatcgtgg taacgaacat
       61 cggcgccttt cacgcgcagg cgatcgatta tcgaaagcgc cggactctca cgcacgtcat
      121 caatgtcctt cttgtaagcg acgcccagca acaaaacgcg cgaccccttc atcgccttgc
      181 gttcatcatt taagccatcg gcgacaagtt gaaccacgtg ttccggcatg cgcgagttga
      241 cctcttcggc aagactaatg aagcgcgaat caaatccatg ctgccgggct ttccatgaaa
      301 gatagtgggg atccaacgga atgcaatggc caccgatgcc gggtccggga tagaacggca
      361 tgaacccaaa tggctttgtc gccgccgctc ggatcacttc ccacgtatcg atgttgaggg
      421 cataacacaa acgcgccatt tcattagcca tgccgatgtt gactgctcga aacgtgttct
      481 cgaggagttt tgccgcttca gccacacggg ccgacgatac cgcgtgaacg tccttcacaa
      541 tttgcgaata gagaaggtcc gccacttcag ttgaagcggg cgtcacacca ccaacgactt
      601 taggaatgtt gtgagtcagg aactgtggat taccaggatc gacgcgctcc ggcgagaaag
      661 caagcaggaa atcttcatca agtttgagac ctgtttcctc aaacatcggc aacagcactt
      721 cgttagttgt accggggtaa gttgtcgact cgagtattac cagttggccg cgacgaattc
      781 gtttctggat ttcctcggcg gcggccagga tgtatgaaac gtcaggctcc ttggttttgc
      841 gaagtggcgt tgggacacag atgatgatgg cgtcgcactc actaaggtga ttgaagtccg
      901 ttgtcgcctt gagtcttcca gcgtcaacaa gttctttaac ttttgatgac gaaacgtcgc
      961 caatgtagga gatacccttg ttgatctgat cggctttgtt ttgatcgacc tcaaagccga
     1021 tgcctttgaa gccgttagcc gcaaattccg cgaccaacg
//
LOCUS       DATCGC010000647         1625 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_476345, whole genome shotgun sequence.
ACCESSION   DATCGC010000647 DATCGC010000000
VERSION     DATCGC010000647.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1625)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1625)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1625
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_476345"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(133..606)
                     /locus_tag="VIJ87_06110"
     CDS             complement(133..606)
                     /locus_tag="VIJ87_06110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444037.1"
                     /translation="MLYPELEQKLQESRHTLNKANSENIFDRCKHYLGLLTEYRSKLY
                     ELREVPGGPQQTAPPPLPAAVLDRKAIREAIETTTRERNRTKVLLLSFTTISGYEAVE
                     IFNERKYEGHEDWELRASGVKFRGGVDGDLMTIQEAVDLASLLRREDHVSQNALN"
     gene            complement(622..1440)
                     /locus_tag="VIJ87_06115"
     CDS             complement(622..1440)
                     /locus_tag="VIJ87_06115"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5444038.1"
                     /translation="MSSECAQTRMILVVEDVRETRDGIEKLLRADGYRVASAEDERDA
                     IDKVSRTDPDLILVSLAGSTDEVVLSARRIRERAAGGDQIPVVVFSSETLAEGEEVAI
                     DRSVYVTRPDNFNQLRSLLARLLRETSSLIELENTNDQYRIETIMTIASGTPFGFRFV
                     DTKQRVLLELTNKTEMTLKSIEILTVFLKDEETPGGGPSQAHIRFDRVMSVQPKEKAV
                     LSHRTWINGKPATEEQDQLGRLEIIAGAVKPYVLDISWEDVEGKTQFQRIPVGH"
BASE COUNT          349 a          414 c          394 g          468 t
ORIGIN      
        1 gtacgcctgt tagttaaccg cgtggacgct gagagtgcac accaaattct cgaggcgccg
       61 atttcaatct gaacgtgtgc atgtttggat tcaggcgtta tctagtgagg ctagtgagag
      121 gtcgctaccg ccctagttga gtgcgttttg tgatacgtgg tcttctcgtc gaagcagact
      181 cgcaagatcg acggcttcct ggatagtcat cagatcacca tcgacgccac ctcgaaactt
      241 aacgccgctc gctcgtagtt cccaatcctc atgaccctcg tatttccgct cgttgaatat
      301 ctctactgct tcatagccac tgattgtggt gaaggagagg agaagtactt tagttctatt
      361 ccgctcgcgt gttgtggtct ctatcgcctc gcgaattgct tttcgatcca gcacggctgc
      421 aggtaatgga ggaggtgctg tttgttgagg tccgccaggc acttcgcgta gttcgtaaag
      481 cttgcttcgg tattcggtga gaagtccaag atagtgtttg caacggtcga aaatgttttc
      541 gctgttggct ttgttaagag tatgtcttga ctcttgtagc ttttgttcta gttcagggta
      601 caacatgact tcggttccta attagtgacc aacgggaatc cgttggaact gagtttttcc
      661 ctctacatcc tcccatgaga tatcaagcac atatggcttg acggcgccgg cgatgatttc
      721 aagccgtccg agttggtctt gctcctctgt tgccggctta ccattaatcc aagttctatg
      781 ggagaggact gccttttcct ttggttgaac ggacatgaca cggtcgaaac gaatatgagc
      841 ttgtgaaggg cctccacctg gagtctcctc atctttaaga aacaccgtca gtatttcaat
      901 tgacttcagg gtcatctccg tcttgttcgt cagctcgagg aggactcgtt gtttggtatc
      961 cacgaatcta aatccaaaag gtgttccgct cgcaatagtc ataatggtct caatccggta
     1021 ttggtcgttt gtattctcaa gctcaatcaa cgatgaggtc tcgcgcagta gtcttgccag
     1081 aagacttctt aactgattga agttatccgg ccgcgttaca taaacacttc gatctatcgc
     1141 cacttcctca ccttcagcga gagtttcact gctaaagacg accacgggga tctggtctcc
     1201 tcctgcggcg cgttctcgga tgcggcgtgc ggaaagaact acttcgtctg ttgatccggc
     1261 caggctcacg agaatcaggt ccggatcggt tcttgagact ttgtcgatag cgtctcgttc
     1321 gtcttccgcc gaagctaccc gatagccgtc ggcccgaagt aatttttcaa ttccatctcg
     1381 tgtttcacgg acatcctcaa ctaccaggat cattcgagtt tgtgcacatt cactagacat
     1441 cggtgctaat cgttgaacgc tttctggtgt ctgggtgtcc cttcacgatc acaggactcc
     1501 cttgttcgct acattggtcc actgcttctc acccgtcgaa gatcacggtt cctagtcaaa
     1561 gtacgactga aagagaatct cgtccgtgcg acaacacaca taggtcagca aactcttcga
     1621 taaga
//
LOCUS       DATCGC010000648         1104 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_442425, whole genome shotgun sequence.
ACCESSION   DATCGC010000648 DATCGC010000000
VERSION     DATCGC010000648.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1104)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1104)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1104
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_442425"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(65..832)
                     /locus_tag="VIJ87_06120"
     CDS             complement(65..832)
                     /locus_tag="VIJ87_06120"
                     /inference="COORDINATES: protein motif:HMM:NF013882.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HEY5444039.1"
                     /translation="MNLIEESCIRFVNLDSRWDRLDLMTKACDEAHIPATRVRGMLPS
                     EYKGNSKRVEVMQNRTPGAIGCWFSQVKIMQEALKQKKHAWVMEDDLIFCKDFHLRLH
                     YMEQFLAKCNWWDILWLGATFHVNPPYWHKKDLGRDAETTDDPRMMRTYGAFCTYAYV
                     VRDRSIERVLHLLDEWLDLSMGIDWAMIQIQPQLQTFAFVPGSVIQRDNKSDIGKGMT
                     IFSGFSKLGPYWFAQRMEDFDPTKFEWHEANQNKGKL"
     gene            complement(829..>1104)
                     /locus_tag="VIJ87_06125"
     CDS             complement(829..>1104)
                     /locus_tag="VIJ87_06125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444040.1"
                     /translation="RCTFWLDAHACGSGSGDMEDCPLIEELLLISMHEIKDHTILIDD
                     VRLFGGELPALDEVKMALARINPDFEISFVNSSEYIGDILVARLPAL"
BASE COUNT          267 a          289 c          266 g          282 t
ORIGIN      
        1 tcggctaact gccggccggc gtccggtttg agactaggac tagggtttgg actaggactt
       61 ggattcataa ttttcctttg ttttggtttg cttcgtgcca ttcaaatttc gtcgggtcaa
      121 agtcttccat acgttgcgcg aaccaatatg ggccgagctt gctgaagcca gagaagatag
      181 tcatcccctt gccgatatcc gacttgttgt ctcgttgaat aacgctaccg gggacgaaag
      241 cgaaagtttg cagctgcggt tggatttgaa tcattgccca gtctattccc atactcaagt
      301 ccagccactc gtccagcaag tgcaatactc gctcaatact ccggtcgcgc acgacgtaag
      361 cgtaggtgca gaaagcgccg taagtccgca tcatccgcgg gtcgtccgta gtctctgcgt
      421 cccgacccaa atctttcttg tgccagtatg gaggattgac gtggaaagtg gcacccagcc
      481 acaagatgtc ccaccaattg cacttcgcta agaactgctc catataatgc aaccgcaagt
      541 ggaagtcttt gcagaatatc aaatcgtctt ccattaccca agcgtgcttc ttttgcttga
      601 gcgcttcttg catgattttg acttgagaaa accagcaccc tatcgctcca ggagtccggt
      661 tctgcataac ttctactcgc ttagagttgc ctttgtattc gctagggagc atcccgcgca
      721 cgcgagtagc ggggatatga gcttcgtcgc aagctttagt catcaagtcc aagcggtccc
      781 aacggctatc gaggttgacg aaccgaatac agctttcttc gattaagttc ataaagcagg
      841 caagcgagcg acgagaatat caccaatata ttcagaagag ttgacgaaag agatttcaaa
      901 gtctggattg attctagcca gagccatctt tacttcgtcc agcgcgggga gctctccacc
      961 gaacaagcgc acgtcatcaa tcagtatcgt atggtctttg atttcgtgca tactgataag
     1021 cagcagctct tctatcaagg gacaatcttc catatctccg ctaccagagc cgcaagcgtg
     1081 agcgtcgagc cagaacgtgc agcg
//
LOCUS       DATCGC010000649         1731 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_108840, whole genome shotgun sequence.
ACCESSION   DATCGC010000649 DATCGC010000000
VERSION     DATCGC010000649.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1731)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1731)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1731
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108840"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..501)
                     /locus_tag="VIJ87_06130"
     CDS             complement(<1..501)
                     /locus_tag="VIJ87_06130"
                     /inference="COORDINATES: protein motif:HMM:NF036484.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444041.1"
                     /translation="MAIDRITVRGARQHNLKNVNVDIPRDQFTVITGLSGSGKSSLAF
                     DTIYAEGQRRYVESLSAYARQFLDQLEKPDVDSVDGLSPAISIEQKTVSRSPRSTVGT
                     VTEIYDYMRLLFSSVGTPHCHVCGAAITRQSVDQIVQSVLGLPEGDRVMVLAPIVRGR
                     KGEFKKE"
     gene            complement(817..>1731)
                     /locus_tag="VIJ87_06135"
     CDS             complement(817..>1731)
                     /locus_tag="VIJ87_06135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444042.1"
                     /translation="PFLGGIQTIPPASRIQIDSDFHQPYIIQSSLGLETTALKFVRLM
                     TNYQYQRGVHMLHGINLNSPVPGIGRPDPTTGNITNIESSAYTSVHRLMIGVGPAAFV
                     NGFFWNVNYMYMRSTNEADSPFSLPSNNYNLRADRGPSASDFHHLLSAFVNKRLKHGF
                     GISAIVQATSALPYNVTTGFDNNGDTVINDRPAGLGRNAARSAPRWEIGSRLSWGKDF
                     GPEQQQTGGPQIRMVRVGAGGEGASAPSIGMGGNKKYHLEFYAQAFNLLNHTNLGVFN
                     GVLVSPYFGRATSAQAPRRMEVGLRFNF"
BASE COUNT          415 a          419 c          472 g          425 t
ORIGIN      
        1 ttcttttttg aactcacctt ttcgtccgcg aacgatgggc gcaagcacca ttactcgatc
       61 gccctcaggc aggccgagca cgctttgcac tatttggtcg acactctgtc gagtaatagc
      121 tgcgccgcac acatgacaat gaggggtacc aactgatgag aacagcagcc tcatgtagtc
      181 atagatttcg gtgactgttc cgacggtcga gcgcggacta cgcgagacag ttttttgctc
      241 aatggaaatt gccggcgaaa gaccgtcaac ggaatcgaca tccggttttt cgagttgatc
      301 gaggaactgt cgggcgtatg ccgatagcga ttcgacgtaa cgcctttgac cttcagcgta
      361 aattgtgtcg aatgcgagtg aagattttcc ggatccggaa aggccggtga ttacagtgaa
      421 ctgatcgcga ggaatgtcga cgttaacatt cttgaggtta tgttgtctgg cgcccctgac
      481 ggttatgcga tcaattgcca tagcacttcg agactgacca ctccacagaa atgaattttg
      541 agtggtgcag aaatggtcat tctagccgag cgactagagt cgggcaagcg aggctaattt
      601 ggggtagtgc cctagtttga gaatctctgt gtttcctctg tgcactctgt gtctctgtgg
      661 tgaaatctat ctcagcaact tcctcaacca cagagacaca gagtgcacag aggaaacaca
      721 gagattccaa ttaggtcacc acctaatttg gctggggttt tgtggactct tgcagtgacc
      781 tactgacctt gaggccactg tgtattaact agaaggttag aaattgaagc gcaaccctac
      841 ttccattcgg cgcggcgctt gagccgatgt cgcacgccca aagtacggag acaccaatac
      901 gccattaaag acgcccagat tcgtgtggtt caaaagattg aacgcctgcg cgtagaactc
      961 aagatggtat ttcttattgc cgcccattcc gattgaagga gcagaggcgc cttcgccgcc
     1021 ggccccaacg cgaaccattc tgatttgtgg tccgcctgtt tgttgttgtt caggtccaaa
     1081 gtctttgccc caactcagcc gcgatccgat ttcccaacga ggagcactgc gagccgcgtt
     1141 tcgccccagg ccagcgggtc gatcgttgat gaccgtgtcg ccgttgttgt cgaaaccagt
     1201 ggtgacgttg tacggcagcg cggaggtcgc ctgcacaatg gctgagatgc cgaaaccatg
     1261 cttcagacgt ttgttaacaa aagctgacaa caggtgatgg aagtcggacg ccgaaggacc
     1321 tcgatcagcc cttaaattat agttgtttga tggaagacta aaaggactgt cagcttcgtt
     1381 ggtgcttctc atgtacatgt agttgacatt ccaaaagaag ccgttgacga acgccgctgg
     1441 tccgacaccg atcatcagac ggtggactga agtgtaagcg gaagactcga tgttggtgat
     1501 gtttccggtt gttggatctg gacgaccaat accgggaacc ggcgagttca ggtttatccc
     1561 gtggagcatg tgaactccac gttggtattg atagttcgtc atcagccgaa caaatttcag
     1621 cgccgtagtt tcaaggccaa gcgacgactg gatgatatag ggctgatgga aatccgaatc
     1681 gatctggatt cgacttgcag gtggaatggt ctgaattcca ccgaggaagg g
//
LOCUS       DATCGC010000650         1492 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_442456, whole genome shotgun sequence.
ACCESSION   DATCGC010000650 DATCGC010000000
VERSION     DATCGC010000650.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1492)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1492)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1492
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_442456"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..864
                     /locus_tag="VIJ87_06140"
     CDS             <1..864
                     /locus_tag="VIJ87_06140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444043.1"
                     /translation="SLPDINDAAGQAKEKVFALLNPTSQRRVSGTITREGQPKKTFDE
                     LIEAAEKQTDVATRDRDLTLAITGSSKDETTERVLNVIDKISDSSIRESLTNWVYLFR
                     AQALTREKKFDEARKLAVKVPELDQRAYLFSQIAEGSLKEAEDQTQARELLNEIAAAS
                     AKAPKTLATARALLALAYLYSKIDTNRGIEELGNAVRVINAIEKPDFSLQFVMLKIEG
                     KNFGSYASISTPGFNPETAFLEIGKLDFDGTLSQATTFADKGLKSLTTLAVIEPCLLA
                     AVKAKKPAPKP"
     gene            complement(867..1310)
                     /locus_tag="VIJ87_06145"
     CDS             complement(867..1310)
                     /locus_tag="VIJ87_06145"
                     /inference="COORDINATES: protein motif:HMM:NF024769.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdeI/OmpD-associated family protein"
                     /protein_id="HEY5444044.1"
                     /translation="MPKVKQIEVTSTVIRHNPQFSRLVTIPLDTIAAWKLDQTTVVEG
                     TINGIDFGRRSLKRWDDRQCWWIDLPEPLCKKVGLETGDEVKLLFRIASEELPEELKQ
                     LLQQNSAANDRWEKLTKAQQRMLREDIFAAKTSAARTRRAEKALG"
BASE COUNT          381 a          381 c          373 g          357 t
ORIGIN      
        1 agcctcccgg acattaacga cgctgctggt caggctaaag aaaaagtctt tgccttgctc
       61 aacccgactt cacaacgccg ggtaagtgga acgattaccc gagagggtca accgaagaaa
      121 acttttgatg agttaattga agctgcggaa aaacagaccg acgtcgcaac acgtgaccgc
      181 gacttgaccc tggcgattac cggttcgtcc aaagatgaaa ccaccgaacg agtattaaat
      241 gtgatcgaca agatctccga ttccagtatt cgtgaatctc tgacgaattg ggtttatctc
      301 tttcgtgcac aggcactgac cagggaaaag aagtttgacg aagcccggaa actcgccgtt
      361 aaagtgcccg aacttgatca gcgtgcttac ctcttctcgc agattgctga aggctccttg
      421 aaagaggccg aggatcaaac ccaggctcgc gaactactca acgagattgc cgcagccagt
      481 gccaaagcac cgaagacact cgccaccgcc cgagcgttat tggcactcgc ctatctctat
      541 tcaaagattg acacaaaccg cgggattgaa gagttgggca atgcagtcag ggtaataaac
      601 gcgatcgaga aaccggactt ctcgcttcaa tttgtgatgc tgaagatcga aggaaagaat
      661 tttggcagct acgcctcgat ttcaactcca ggcttcaatc ctgaaactgc gtttttagaa
      721 attggcaagt tggatttcga cggcacgttg agccaagcaa caactttcgc tgacaagggt
      781 ttgaagtcat taacgacact ggcggtcatc gagccatgct tgctggcagc tgtaaaagcg
      841 aagaagccgg caccaaagcc ttgaggtcaa ccaagagcct tttcggctct gcgagtgcgt
      901 gccgctgatg tttttgcggc aaaaatatct tcacgtaaca tgcgttgttg ggcctttgtg
      961 agtttttccc aacgatcgtt tgcagcggag ttctgttgaa ggagttgctt cagttcctct
     1021 ggtaattctt cggaagcaat cctgaacaac aacttcactt catcacccgt ttccagtcca
     1081 acctttttgc aaagcggctc aggcagatcg atccaccagc attgacgatc atcccagcgc
     1141 ttcagacttc tacggccgaa gtcaattcca ttgattgtgc cttcgacgac agttgtctga
     1201 tcaagtttcc aagcggcgat cgtgtccaaa ggaatagtta caagacgtga aaactgagga
     1261 ttatgtcgga tgacagtgga agtgacttcg atctgtttga ctttaggcat cagttcgcgt
     1321 cgtgcgtctt caaccggtgc ggtagcccga ctgtcaagga gggctcgtct ttaggtgttt
     1381 aaatgatgcc agagccctcc ttgacagtgg ggctactgca ccgggcgcac cgggcgctac
     1441 tatcagcttt cagtaacgtc agtcccacga tctctgcgtg caacgccagt cg
//
LOCUS       DATCGC010000651         1836 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_42488, whole genome shotgun sequence.
ACCESSION   DATCGC010000651 DATCGC010000000
VERSION     DATCGC010000651.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1836)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1836)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1836
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42488"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..374)
                     /locus_tag="VIJ87_06150"
     CDS             complement(<1..374)
                     /locus_tag="VIJ87_06150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444045.1"
                     /translation="MILLCGIPTESPLALVSKALDKHDVPYVLLNQRKFSIMKAQLEI
                     SGGRASGKLQMNGDSYQLDDFSAVFSRLMDYRFLPEIKDTPEDSPDRQLGRNLFDTLT
                     RWAEITPARVVNRMAPMGSNFS"
     gene            complement(371..1117)
                     /locus_tag="VIJ87_06155"
     CDS             complement(371..1117)
                     /locus_tag="VIJ87_06155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444046.1"
                     /translation="MICSEQDPSALWAYHGLQARGLRPFQLVTAEMLAQDAKWEHSVG
                     VNGAYINITLADGRVINNRMVRGVVNRLTHVPLQHFAGASDYEYAVQEYTALFMSWLN
                     VLPRPIFNTVNAQGLAGAWRHVSEWLWLAAKAGLPTPVYSQTSHDDIDESVELRRIVP
                     EGTRTTMAITVGDRVFGPFLPQSVRTACCELARISQTPMLGVELAYSQETNSWLFAGA
                     TPMPDLRLGGDPLLDVLAVKLFRREGGDQS"
     gene            complement(1229..>1836)
                     /locus_tag="VIJ87_06160"
     CDS             complement(1229..>1836)
                     /locus_tag="VIJ87_06160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444047.1"
                     /translation="FDPGEIFTRSHAASAEESMDLTAAAAPKPKETDKNLKDIEKIKP
                     EKEQVEKIQKDIEKIKPEKEFSKHEIKEFKHEKIEHKELKIEKHEIKELKNEIFEKAH
                     QKDLLPDKLVIENDPKGIVENPGGQFPGVDPATRGPIFKASGTAEDRLSELEAAVTKL
                     THFIGVDLRPDLSEGALKGEPDVAGGKADEAKPDDKNKKPR"
BASE COUNT          375 a          482 c          479 g          500 t
ORIGIN      
        1 ttggagaagt ttgaacccat cggagccata cgatttacga ctcgcgctgg tgtgatctct
       61 gcccaacgag tcaaggtatc gaagagattt cgacccaact gccgatcagg cgagtcttca
      121 ggtgtgtctt tgatctcagg cagaaatcgg tagtccatga gtcgagagaa gactgcactg
      181 aagtcgtcga gttgataact gtcgccattc atctggagtt tgccactcgc tcgtccgccg
      241 gaaatctcca gctgcgcttt catgatcgaa aacttccgct ggttcaaaag gacgtacggc
      301 acatcgtgct tatcaagtgc tttgctcacc agagccaacg gagattcagt gggaatacca
      361 catagtagaa tcatgattga tcgcctcctt ctcggcgaaa gagttttacc gccaacacat
      421 cgagtagtgg atcaccaccc agtcttagat caggcatcgg cgttgcgccg gcgaaaagcc
      481 atgaattggt ttcctgactg taagccaact cgacacctag cattggcgtt tgcgagatgc
      541 gtgcaagttc acagcaagcc gtccggacgg attgcggcaa gaacggtcca aagacccgat
      601 ccccaactgt gattgccatt gttgtccgcg ttccttcggg aacgattcgg cgcagttcta
      661 cgctttcatc gatgtcgtcg tgacttgttt gtgagtagac gggcgtcggt aaaccggcct
      721 tggcagcgag ccatagccac tccgacacgt gacgccatgc accggccagt ccctgggcat
      781 tgacggtatt gaagatcgga cgaggtagga cattgagcca actcatgaag agcgctgtgt
      841 attcctgcac ggcgtattcg tagtcagaag cgccggcgaa gtgttgtagc gggacatgcg
      901 tcaggcggtt gaccacgccg cgcaccattc ggttattgat aacccgaccg tctgcaagcg
      961 tgatattgat gtaggcaccg ttgacaccga ccgagtgttc ccattttgcg tcttgcgcca
     1021 acatctcggc agtcaccaat tgaaatggtc taagacctcg agcttgtaac ccgtggtagg
     1081 cccagagtgc tgatgggtcc tgttctgaac agatcattag ccacatgatt cgtcctttgg
     1141 aatggcgagg ccagatacgc tgacctcgcc ttcggttcgt agcattaata ccttagcccg
     1201 tttctgacac ggactttcta caggttacct agcgaggctt cttgtttttg tcatccggtt
     1261 ttgcttcgtc agcctttcca ccggcgacat ctggttcgcc cttgagcgcg ccctcactaa
     1321 gatcgggacg aagatcgacg ccgataaagt gcgtcaactt ggtgaccgcg gcttccaatt
     1381 cactcaggcg atcctcggct gttccagagg ctttgaatat gggacccctg gtcgcaggat
     1441 cgacgccagg aaattgtccg cctgggtttt caacaattcc cttgggatcg ttttcgatga
     1501 ctagtttgtc gggaagcagg tctttctggt gggccttttc gaagatctca ttctttagct
     1561 ctttgatttc gtgtttctca atcttgagct ccttgtgttc gatcttctcg tgcttgaact
     1621 ccttgatttc gtgcttggag aattccttct ccggcttgat cttttcgatg tccttttgga
     1681 tcttctcgac ttgttctttc tccggtttga tcttctcgat gtccttcaag ttcttgtcag
     1741 tttcctttgg cttgggagca gctgctgcgg tgaggtccat cgattcttca gcactggcag
     1801 cgtgactacg agtgaagatt tcgcctggat cgaaac
//
LOCUS       DATCGC010000652         1325 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_78211, whole genome shotgun sequence.
ACCESSION   DATCGC010000652 DATCGC010000000
VERSION     DATCGC010000652.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1325)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1325)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1325
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78211"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..495)
                     /locus_tag="VIJ87_06165"
     CDS             complement(<1..495)
                     /locus_tag="VIJ87_06165"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HEY5444048.1"
                     /translation="MGRIDFYRVLGISRDASDDAVKKAYRKLVFQHHPDRNPASTQAE
                     TKIREINEAYEVVGDPEKRRSYDRLTWGDETIRDEAADPAVILDEMEQKLFDEGRKEV
                     FAVLMKDVKRVKAELGVIRKRTVADQGYDTFKEEIVRERASEVMEELVNAEMEGRKQR
                     LIEVA"
     gene            627..1301
                     /locus_tag="VIJ87_06170"
     CDS             627..1301
                     /locus_tag="VIJ87_06170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444049.1"
                     /translation="MTNKPPPKALTHDQKKAADAAFSGRPFNEAWSASARAVYDGLMK
                     ALPHRDLAAPDHFTLESSVKAPAIESESLQALEPLGQEQVGLQGGAGEGAVIPSTIRD
                     RDTAIQAGILIDVTSAAQQLGITFPVTMTRPLWEMGIVTNQPLPEEDQTGRLRDILMA
                     FRLRLASLTTVPPLLDFPVLLALPPNRAPQPVPLFALIQPDPTYQANVTLLLSSEVSL
                     SISSLN"
BASE COUNT          285 a          415 c          313 g          312 t
ORIGIN      
        1 cgccacttca atgagccgct gcttgcgtcc ctccatctca gcattcacca gctcctccat
       61 tacctccgat gcccgctccc gaactatttc ttctttaaat gtgtcgtacc cttgatccgc
      121 cacggttcgc ttgcgaatca cgccgagttc tgccttgacc cgcttcacat ctttcatcaa
      181 cactgcgaat acttccttgc gcccctcatc gaacagtttc tgctccatct cgtcgagaat
      241 aacagctgga tcggccgctt catctcgtat cgtttcatcc ccccaagtga gccgatcgta
      301 actccggcgc ttctccggat caccgacgac ttcgtaggcc tcattgatct cacgaatctt
      361 ggtttcggcc tgtgtgctag cggggttgcg atcgggatgg tgctgaaaga ccaacttccg
      421 ataggccttc ttgaccgcat cgtcagacgc atcgcgcgag atcccaagca cccggtagaa
      481 atcgattcgt cccatggcga ggaactatag catggggctt cgaagggctt caccttgact
      541 cctcattcga acaaataccg cctgacgcgg tcacggaaca gttcacgact cttgacatcc
      601 cgtcaaagcg gcttatgtac taaatcatga caaacaaacc accacccaaa gccttgaccc
      661 acgaccagaa gaaagctgcg gacgctgcct ttagtggccg cccgttcaat gaggcttggt
      721 ctgcttcagc tagggcggtc tatgacggcc ttatgaaggc cctacctcac agagacctcg
      781 cggctcccga tcatttcact ctcgaatcgt cagttaaggc tcccgccatt gagagcgaat
      841 ctctgcaagc tcttgaacct ctgggtcaag agcaggtcgg cctgcaaggg ggggcgggag
      901 agggagctgt gattccttca acgattcgcg accgggatac tgcaattcaa gccggaatct
      961 tgatcgacgt gacatcggcc gcccagcaac tcggtatcac cttccctgtc acgatgacca
     1021 ggccgctttg ggaaatggga attgtcacga atcaaccact cccggaagaa gatcaaaccg
     1081 gacggttgcg cgacattctg atggcctttc gtctgcgcct ggccagtcta acgactgtgc
     1141 cgccgcttct cgactttcca gttctgctgg ctttgccgcc aaacagggct ccccaaccgg
     1201 tgccattgtt tgctcttatt caaccggacc ccacatatca agcgaacgtg acactcttat
     1261 tgtcgagcga agtgtcgcta tcgatcagct cactgaatta gatggatgct gaaaagtcct
     1321 ccagc
//
LOCUS       DATCGC010000653         1404 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_442564, whole genome shotgun sequence.
ACCESSION   DATCGC010000653 DATCGC010000000
VERSION     DATCGC010000653.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1404)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1404)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1404
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_442564"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1357)
                     /locus_tag="VIJ87_06175"
     CDS             complement(<1..1357)
                     /locus_tag="VIJ87_06175"
                     /inference="COORDINATES: protein motif:HMM:NF012550.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HEY5444050.1"
                     /translation="MLKPAKEGGYGKTEDELWTRYHVKIGEDRQLVVAGGGEQSTDAI
                     PATVAGDGSTQATSVWSETEMVNNRPTPDLVDSIPEDEFPSGDELLGHGDVLIAAITS
                     CTNTSNPSVMLAAGLLAKKAVERGLSVSRKVKNSLAPGSRVVTEYLEKTGLQPYLNQL
                     GFNLVGYGCTTCIGNSGPLDPSIEQVVNERDVIAASVLSGNRNFEARVHQSIKANFLM
                     SPPLVVAFALAGRIDVDMSSEPLGTGKNGEEVYLKDIWPSLHEVNEVIRAAFDPQTYQ
                     NLYSNFADQNPLWNEIPTTTGNVYQWESESTYIREPPYFDNFKSGLETISEIKGARPL
                     AIFGDSVTTDHISPAGAIKPSSPAGLYLQQRGVDIKDFNSYGARRGNHEVMVRGTFAN
                     VRIKNLMVPGVEGGVTIHQPDGERTSIYDSAMKYQEAGTPLIILAGQEYGTGSSRDWA
                     AK"
BASE COUNT          309 a          388 c          345 g          362 t
ORIGIN      
        1 ccttggcagc ccagtctcga gaactcccgg ttccgtattc ctgccccgcg aggattatca
       61 gcggtgttcc ggcttcctga tacttcattg cggagtcgta gatactcgtg cgctctccat
      121 caggctggtg aattgtgaca ccaccttcaa cacctggaac catgaggttc ttaattcgca
      181 cgttagcgaa agtgccgcgc accattacct catgattgcc acgccgtgcc ccgtaactat
      241 tgaagtcttt gatatcgacg ccacgctgct gcaaatacaa gccggcaggt gatgaaggtt
      301 ttatcgcgcc cgcaggactg atgtggtcag ttgtgactga gtcgccgaag atcgcgagcg
      361 gccgtgcgcc cttaatctcg gagattgttt ccagcccgct tttgaagtta tcgaagtaag
      421 gaggctcgcg aatgtaggtt gattctgatt cccactgata gacgtttccg gttgtcgttg
      481 gaatctcgtt ccacagcggg ttctgatccg caaagttgct gtagagattc tgatacgttt
      541 gaggatcaaa cgcggcccgt atcacttcgt taacctcgtg caagctgggc cagatatcct
      601 tcaaataaac ttcttcgccg ttcttacccg tgccaagcgg ttcagaagac atgtcgacgt
      661 cgatgcgacc agccagtgca aatgcgacga cgagtggtgg actcatcaag aagttggcct
      721 tgatgctttg atggacgcga gcttcgaaat tgcggttacc agacaaaacc gatgcggcaa
      781 taacgtctcg ctcatttact acctgttcga tggagggatc gagtggaccg gagtttccga
      841 tacaagtggt acagccgtaa ccgacgagat tgaagcctag ttgattcagg taaggttgca
      901 gcccggtttt ttccaaatac tcggtcacca ctctcgatcc cggggcaagc gaatttttga
      961 cttttcgact aacagacaat ccacgctcaa ctgctttctt ggcaagcagg ccggcagcaa
     1021 gcatgacgct gggattcgac gtattagtgc aggacgtaat cgccgctatc aacacgtctc
     1081 cgtgtcccag caactcatca ccactcggga actcatcttc aggaatacta tcaacgagat
     1141 cgggtgtcgg acgattgttg accatttccg tctcactcca gacactcgtc gcttgtgttg
     1201 aaccatcacc ggccactgtt gccggaatcg cgtcagtgct ttgttcacca cctccggcaa
     1261 ccaccaactg ccgatcctcg ccgatcttca catggtagcg agtccaaagc tcatcttccg
     1321 tcttaccata gcctccttcc ttcgcaggct tcagcatcaa ctggttgaat tgttctttta
     1381 agttggttag ttcgatccga tcct
//
LOCUS       DATCGC010000654         1551 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_208562, whole genome shotgun sequence.
ACCESSION   DATCGC010000654 DATCGC010000000
VERSION     DATCGC010000654.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1551)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1551)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1551
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_208562"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..891
                     /locus_tag="VIJ87_06180"
     CDS             <1..891
                     /locus_tag="VIJ87_06180"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEY5444051.1"
                     /translation="EILLNGLDFKPGDEILSTTQDYPRMLTTLRQREKREGLVLKLVQ
                     IPIPPKNLNEITAAFEKGITPKTKLILISHQINLTGQITPVKAVCDMARARGIETIVD
                     GAHSFAQFAFTQKDLGCDYFGTSLHKWIYAPKGTGLLYVKRDKIEKVWPLMAAESKQS
                     GDIRKFEEVGTHSAAPRLAIGEAMLFHNGIGARRKEARLRYLSRYWMNRLKDVPKIGF
                     NTSFDPLQSCAIANVKVDGVDPRAIGSYLFAQHRIFTTPITHEEFNGIRITPNVYTTL
                     GELDRFCNVMEQIAKKGLPT"
     gene            1167..1445
                     /locus_tag="VIJ87_06185"
     CDS             1167..1445
                     /locus_tag="VIJ87_06185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444052.1"
                     /translation="MEDARERINNAAEAVCDGLRQIGDFSYAVFPKDIAHALGDFKKA
                     FLSEVRHLIDWEIQWNDERVAGGDKLRDEWREKCRQNTSDDRPPETFA"
BASE COUNT          398 a          387 c          407 g          359 t
ORIGIN      
        1 gaaattcttc ttaacggatt ggacttcaag ccaggcgatg aaattctcag caccacccag
       61 gactatcctc gaatgctgac aacattgcgt cagcgcgaaa aacgcgaagg cctggtgctc
      121 aagctcgtac agattccgat cccgcccaag aacttgaacg agatcacggc tgcattcgaa
      181 aaaggaatca ctcccaaaac caaactcatt ctgatttcgc atcagataaa tctcaccggg
      241 cagatcactc cagtaaaagc tgtttgcgac atggcgcgtg cgagagggat cgagacaatc
      301 gtggacggcg cacattcgtt tgcgcagttt gcgttcactc agaaagatct tggctgcgac
      361 tactttggaa cgagtcttca caaatggatt tacgcgccga aaggaaccgg gctgctctat
      421 gtgaagcgcg acaagatcga aaaggtatgg ccattgatgg cggcggagtc aaaacagtct
      481 ggcgacataa gaaagtttga ggaagttggc acccactcag ccgctccccg tttagcgatc
      541 ggtgaagcga tgctttttca caatggcatc ggcgcaaggc ggaaagaagc gaggctgcgc
      601 tatctgtcgc gttactggat gaatcggttg aaggacgttc caaagattgg cttcaacacc
      661 tcgtttgacc cgttgcagtc gtgtgcaatc gccaacgtca aagtggacgg agttgatccg
      721 cgagccattg gtagttacct ttttgcacag catcggattt tcacgactcc cattactcac
      781 gaagagttta acggcattcg catcacgccc aacgtctata caacacttgg cgaactcgac
      841 cgcttctgta acgtgatgga gcagattgcg aaaaagggtt tgccaaccta acggaggggt
      901 ttgagccgta gtcggtacca gaacgcgata gcgtgtggct tcgagcgtaa gcgacgtgac
      961 attcatgaca attgagccac acgctaccgc tttctggtac tgacttctac atttccttct
     1021 tctgatccgt gtttatctgc cttaatctgc ggctaatatc tcttctggaa ccgagcctgt
     1081 cgtgcgggcg tacaaacttg gtgctagaat caaatcgtcg ccttagtacg cgactttgtg
     1141 cggttgagtg gaggttcaaa cgatttatgg aagacgctcg agaacgaatt aacaacgcag
     1201 ctgaggcagt ttgcgacggc ctgcgccaaa ttggcgactt ctcttacgct gtattcccca
     1261 aagacattgc ccacgccctc ggcgacttca aaaaggcttt tctatctgaa gttcgccatc
     1321 taattgactg ggaaatccag tggaacgatg aacgggtggc tggaggcgac aaactccgcg
     1381 acgaatggcg tgagaaatgt cgacagaata cctcggacga cagaccgccc gagacattcg
     1441 cgtaaattct accgaacagg acacgatacc tgatggaagt tcttctcgca gaagagtacg
     1501 gattttgttt cggcgttgag cgcgccgtcg aaatggttga ggaagtggtc g
//
LOCUS       DATCGC010000655         1029 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_374989, whole genome shotgun sequence.
ACCESSION   DATCGC010000655 DATCGC010000000
VERSION     DATCGC010000655.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1029
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_374989"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(96..923)
                     /locus_tag="VIJ87_06190"
     CDS             complement(96..923)
                     /locus_tag="VIJ87_06190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444053.1"
                     /translation="MAPKTTLLLIAFLLLARTLHAQGQATTPPEPISDNSFLIEEAYN
                     QEAGVVQHINTFTRSRGGSWLYTFTQEWPVKSMKHQFSYTLTVLDAVNNPAVRGLGDM
                     ALNYRYQLVANDKVAIAPRISLSLPTGNSKKALGIGGVGFQTNLPISVTHSSKFVTHW
                     NAGATLIPRAKDTDGEQAFVKGFNLGQSSVWLAKPRFNVLVETVWNGFQTVVHLHETE
                     TVYSLLLNPGVRWAYNFKSGLQIVPGVSVPIGIGPSRGQVGVLFYLSFEHPFKKTTK"
BASE COUNT          250 a          257 c          247 g          275 t
ORIGIN      
        1 gcggttcgac ctcaagaaac gcacggtgat cagttaactc gactaacggg atatctttgc
       61 ttttaatctg tgaggctgta atccgtagat gtgattcatt tcgttgtctt cttgaatgga
      121 tgctcgaagc ttaagtaaaa gaggactccg acttgtcctc gacttgggcc aataccgatt
      181 ggcactgaaa ctccaggcac aatctgcaaa ccgctcttga agttgtacgc ccacctcaca
      241 cctggattga gcaacaaact ataaactgtt tcggtttcgt gtaggtgcac tacggtttga
      301 aagccattcc aaactgtctc aacgagcaca ttgaatctag gcttagcgag ccagaccgag
      361 ctttgtccaa gattaaaacc tttgacaaag gcttgttcgc catcggtgtc cttcgcccgt
      421 ggaataagcg tcgcccctgc attccaatgc gtcacaaatt tgcttgagtg agtaacgctg
      481 atgggcagat ttgtttggaa cccaactcca ccaataccca acgccttctt tgaattgccg
      541 gttggtaatg acaaggatat tcgtggcgcg atcgcaactt tgtcgttggc taccaattga
      601 tagcgatagt tcagcgccat atcgcccagg ccacgaacgg ccggattgtt tacggcgtcc
      661 aacactgtca gagtgtaact gaattggtgc ttcatcgatt tcacaggcca ttcctgtgta
      721 aatgtgtaaa gccagctacc acctctcgaa cgcgtgaaag tattaatgtg ttggaccacg
      781 ccggcttcct ggttgtaggc ttcctcaatc aggaaactgt tgtcggaaat cggttctggt
      841 ggtgtcgtcg cctggccttg cgcatgcaac gtccgcgcaa gcaggagaaa cgctataagc
      901 aataatgtag ttttaggggc catgactatt gttgaggcac ggtgccttct ttcagcccac
      961 ggcctaaacc caaccttggg ctagctttcg ctaacgctgt cagtgtaaat gctgaatgtt
     1021 cgacctaaa
//
LOCUS       DATCGC010000656         3122 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_275327, whole genome shotgun sequence.
ACCESSION   DATCGC010000656 DATCGC010000000
VERSION     DATCGC010000656.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3122
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275327"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..649)
                     /locus_tag="VIJ87_06195"
     CDS             complement(<1..649)
                     /locus_tag="VIJ87_06195"
                     /inference="COORDINATES: protein motif:HMM:NF012337.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl synthase N-terminal-like
                     domain-containing protein"
                     /protein_id="HEY5444054.1"
                     /translation="MTRRVVITGLGLVTPVGNTVEDTWTALMNGRSGADFIKKFDTEK
                     FSVKFACEVKDFDPLKFIAKKEARKMGAFIHYAIAASIEALADSGFQMTAEGKFPDEF
                     SENAGTYISSGIGDFWAIEREHSKLLDGGPDRVSPFFIVSAIVNLAAGQVSIRFGAKG
                     PNSATATACAAGAHAIGDSFKIIQRGDADLMICGGAESAITPMSVAGFSAMRALST"
     gene            complement(735..977)
                     /locus_tag="VIJ87_06200"
     CDS             complement(735..977)
                     /locus_tag="VIJ87_06200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019948606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEY5444055.1"
                     /translation="MPDQEIENKVKQIIVDELGVDENEVTPNARFIDDLGADSLDTVE
                     LVMRFEEEFGIEIPDEDAEKIQSVRDAYNYIDQHKK"
     gene            complement(1009..1986)
                     /gene="fabD"
                     /locus_tag="VIJ87_06205"
     CDS             complement(1009..1986)
                     /gene="fabD"
                     /locus_tag="VIJ87_06205"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: protein motif:HMM:TIGR00128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004314 - [acyl-carrier-protein]
                     S-malonyltransferase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HEY5444056.1"
                     /translation="MENEQSEILNLQSSIAFLFPGQGSQYAGMGKELAENFPAAKQVF
                     EEADEALSFSISRLCFEGPEEDLQLTENTQPAILSVSVAAFRAIQTQGLPAPAFVAGH
                     SLGEYSALVAAGAMSLGDAVRTVRARGRYMQEAVPVGTGAMAAVIGGERDAIEQACRE
                     ASGNQVCSVANINSPNQVVIAGNTEAVDRAMELLKGVAKRVIKLNVSAPFHCALMKPA
                     QDRLAFELEQLAFTEPTPSVITNVDAKITSAPGDLRDSLLRQVSAPVRWLESMELLFQ
                     HGVTTFVEVGPGKVLSGLMRQINRDVNCLNVEDSVSLEAARAKLNAGTG"
     gene            complement(2074..3060)
                     /locus_tag="VIJ87_06210"
     CDS             complement(2074..3060)
                     /locus_tag="VIJ87_06210"
                     /EC_number="2.3.1.180"
                     /inference="COORDINATES: protein motif:HMM:NF006829.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0033818 -
                     beta-ketoacyl-acyl-carrier-protein synthase III activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HEY5444057.1"
                     /translation="MANQRAGILGTGHAYPEGILSNADLASMVETSDEWITTRTGIKQ
                     RRKAAPDEYTSLFAVRAARQAIERARLDPSDIDLLLCATVTPDQILPSTGCIIQAELG
                     ANNAAAMDVVAACSGFLYGVSIANSMIQTGQSKYALVIGAEILTQYVDYTDRQTCVLF
                     GDGAGAAVLGPVEGNRGILGAKIKSDGRYEEQLFSPGGGTRKRPTAETLAAGDHFFKM
                     RGNELFKVAVRSMAEISRDVLESAGHKAEDIDLFIPHQANQRITEAVADRLNVDSSKV
                     YSNIAVHGNTSSASIPIALDECVQTGRIKDGDLVMMASFGGGVTWGGVLVRW"
BASE COUNT          755 a          886 c          723 g          758 t
ORIGIN      
        1 tcgtggataa cgctcgcata gcagaaaaac ctgccacact catgggcgta attgcagatt
       61 ctgcaccacc gcaaatcatc aaatccgcgt cgccacgctg gattattttg aagctatcgc
      121 caatcgcatg tgctcctgcg gcacacgcgg ttgctgttgc ggagtttggt ccctttgcgc
      181 cgaagcgaat cgaaacctgg cccgcagcta aattgacgat ggcagaaacg atgaagaacg
      241 gagacacgcg atcggggccg ccatcgagca actttgaatg ctcacgctcg attgcccaga
      301 agtcaccgat gccgctgctg atataggtcc cagcattttc ggaaaactca tcggggaact
      361 tcccttcggc ggtcatttga aaaccgctgt cggcaagcgc ctcgattgat gcggcgatcg
      421 cgtaatgaat gaaggcgccc atcttgcgcg cctctttttt ggcaataaac ttaagcgggt
      481 cgaagtcttt aacttcgcac gcgaacttca ccgaaaactt ctcagtgtca aacttcttga
      541 tgaagtcggc gccgctgcgc ccattcatca aggcagtcca cgtgtcttcg acagtattgc
      601 caaccggagt tacgaggccg agccccgtga tcacgacacg acgtgtcaag ttaaagctcc
      661 ttgaaattgc agtgataagc gaatggtgac gagtgacgaa gattcaccac ccatcactaa
      721 cgcattcctt atcactactt cttgtgctga tcgatatagt tatatgcgtc gcgaacgctt
      781 tgaattttct cagcgtcttc atcaggaatc tcaattccaa attcctcttc aaaacgcatc
      841 accagttcga ccgtatccag cgagtcggca cccaggtcgt caataaacct tgcgttcggt
      901 gtgacctcgt tttcatctac tcccaattca tcaacgatga tttgcttgac cttattctcg
      961 atctcttgat cgggcatttc gtttgctcct ctgcgtgttt ttcttagatc atccagtccc
     1021 ggcgttcaac ttggcgcgtg ctgcttccaa gctaaccgaa tcttctacgt tgagacagtt
     1081 gacatcacga ttaatctgtc tcattagtcc tgacaaaact tttcctggcc cgacctcgac
     1141 aaaggtcgtc accccatgtt gaaacaacaa ctccatcgac tccagccaac gtactggagc
     1201 ggaaacctgt cgtagcagcg aatctcttaa atcaccgggg gcgctggtaa ttttagcgtc
     1261 gacgtttgta atgaccgatg gcgtcggctc agtgaaagcc agttgctcaa gttcaaacgc
     1321 taaacgatcc tgtgccggtt tcatgagcgc gcaatgaaaa ggcgcgctga cattcagttt
     1381 gataactcgc ttcgcaaccc ctttcaacaa ctccattgca cgatcgacgg cttccgtatt
     1441 tcccgcaatc accacctgat tgggagaatt gatattagcc accgagcaaa cctggttgcc
     1501 acttgcttct cgacaagctt gttcaattgc gtcgcgttcg ccaccaatca ccgcagccat
     1561 tgcacccgtc ccaacgggca ctgcttcctg catataacgg ccgcgcgctc taacagttcg
     1621 aacagcgtcg cccaatgaca tcgcaccggc agcaacaaga gcagagtatt cacccaaact
     1681 gtgtcccgcg acaaaagccg gcgcaggtag accctgggtt tgtatagctc taaaggctgc
     1741 gaccgatacg gacaagatcg cgggctgcgt gttttcagtt aactgaaggt cttcttcggg
     1801 accttcaaaa cacagtcgcg aaattgaaaa gctcaatgct tcatctgctt cttcaaagac
     1861 ctgcttggcc gccggaaaat tctcagccaa ctcttttccc atgcccgcgt attgcgaacc
     1921 ctggccggga aagaggaaag ctattgaaga ttgcagattt aagatttcag attgttcgtt
     1981 ttccactagc ttcgtcttcg ataacgttca aataatttcc gcggaccaca cacacaatct
     2041 gcaatctgaa atctgcaatc ttcaatgatc agcctaccat ctcaccaaca ccccacccca
     2101 cgtcactccg ccaccaaacg aagccatcat caccaggtcg ccgtccttta tgcgacccgt
     2161 ttgaacacat tcgtccaacg caatgggaat tgatgctgag gaagtgttgc cgtgtacggc
     2221 aatgtttgaa taaacctttg agctgtcgac attcaggcga tcggcgaccg cttctgtaat
     2281 gcgctgattg gcctgatgtg gaatgaacaa gtcaatgtct tctgccttat gaccagcgga
     2341 ctccaacacg tcgcgcgaaa tctcggccat agatcggacc gcgaccttaa atagctcgtt
     2401 acctctcatc ttgaagaaat gatccccagc tgccaacgtc tcggccgtcg gtcgcttgcg
     2461 cgttccgcct cctggcgaaa aaagctgttc ctcgtatcgt ccgtctgact tgatcttcgc
     2521 gccaaggatg ccgcggtttc cctcgacggg tcccaagact gcggctccgg cgccgtcacc
     2581 gaaaagtacg cacgtctgcc tatcagtgta gtcgacatac tgagtaagta tctcggcgcc
     2641 aataaccaga gcatacttcg actggcctgt ctgaatcatc gaattggcga tcgagacgcc
     2701 gtaaagaaaa cctgagcaag ccgcaaccac gtccattgct gccgcgttgt tggctccgag
     2761 ttcagcctga atgatgcaac cggtcgaagg aagaatctga tccggagtaa ctgttgcgca
     2821 caagagcagg tcgatgtccg acggatccaa ccgagcgcgt tctattgctt gtcttgcagc
     2881 acggacggca aacagggacg tgtattcgtc aggggctgct tttcgacgtt gtttgattcc
     2941 agttcgagtt gtaatccact cgtccgacgt ctcaaccatg gaggcgaggt cggcattgct
     3001 caagatgcct tcaggatagg cgtggcccgt accaagaatt cctgcgcgtt gatttgccat
     3061 taattcctca aattatgaag gggcggtaat agtatccact aacaaaataa aagccaaact
     3121 ag
//
LOCUS       DATCGC010000657        15984 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_476538, whole genome shotgun sequence.
ACCESSION   DATCGC010000657 DATCGC010000000
VERSION     DATCGC010000657.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 15984)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15984)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15984
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_476538"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..399)
                     /locus_tag="VIJ87_06215"
     CDS             complement(<1..399)
                     /locus_tag="VIJ87_06215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444058.1"
                     /translation="MTVLTWDDPGTRVYESGVDRGVLYLPGGLGIAWNGLISVDEQVT
                     GNSQDPLYFDGIKYSDVVVPGDFAASLKAYTYPDEFLPFEGTLEVNNGMFVTNQTPSR
                     FGLSYRTKVGNDETGDAGYKIHVLYNLLAFP"
     gene            complement(408..959)
                     /locus_tag="VIJ87_06220"
     CDS             complement(408..959)
                     /locus_tag="VIJ87_06220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444059.1"
                     /translation="MLKLSIEAQELFDEASQTFKSQPAFVLELEHSLVSVSKWESDHE
                     KPFLIDTAKSGQEMLDYVIAMIVTPEYPSNVAALLSVENFVIVQNYINSKQSATTFGE
                     LPKPRGKGETITAELIYYWMVAFNIPFECERWHLNRLFSLIRIANIKNSKQSGKSKRL
                     NQSDLEARRALNEQRRRQLGTAG"
     gene            complement(987..1868)
                     /locus_tag="VIJ87_06225"
     CDS             complement(987..1868)
                     /locus_tag="VIJ87_06225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444060.1"
                     /translation="MTALVWDQVGERLYETGVDHGVLYLPTDGIYDEGVAWNGLVTVT
                     ESPSGAEPTPLFADNIKYLNLISREDFGGTIEAFTYPDEFAQCDGSATPQPGIAVGQQ
                     PRRQFGLCYRTMVGNDEIATNFGYKLHLVYGATAAASEKAYGTVNDTPEAITFSWDFS
                     TVPVAVTGMKPSATIVIDSTKVDPAELATLEGVLYGTGGTDARLPLPDEVVGMFTGGG
                     ATAVTATTPGFTAATGAIVIPTVTGVRYRRADTGAVVTGTVTIPVSGQTLVINAEALP
                     TYVLAPTSDDDWSFTRS"
     gene            complement(1881..2189)
                     /locus_tag="VIJ87_06230"
     CDS             complement(1881..2189)
                     /locus_tag="VIJ87_06230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444061.1"
                     /translation="MIRQRVDLQDIFAAILGNDHVYFQPPPDLKLEYPCIVYHRDFAL
                     TFFADNYPYRYGKRYMVTVIDRDPDSPIPDRVAQLPLCKYDRSYTADNLNHDVYRLFF
                     "
     gene            complement(2198..2527)
                     /locus_tag="VIJ87_06235"
     CDS             complement(2198..2527)
                     /locus_tag="VIJ87_06235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444062.1"
                     /translation="MTKFYGVIGYGESIENPPGSGVWKDKITEFSYYGDVVRNVRRLE
                     KGEGLNDDISVQNSISIVADEYAVKHFFAIRYIRWEGVLWTVTSVDVRAPRLILSLGS
                     VYNGPTA"
     gene            complement(2542..4539)
                     /locus_tag="VIJ87_06240"
     CDS             complement(2542..4539)
                     /locus_tag="VIJ87_06240"
                     /inference="COORDINATES: protein motif:HMM:NF016471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0019082 - viral protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 family phage prohead protease"
                     /protein_id="HEY5444063.1"
                     /translation="MKPDFSGYATRAGLRCSDGKTIMPDAFKPQDGQKVPLVWQHGHT
                     DPENVLGHAILENRPEGVYAYCFLNNSQKADHSRELLEHGDIHMMSIWANQLIQRAGK
                     VLHGVIREVSLVLAGANPGALIDSVTVRHSDGDEVLEDEAFIYTGEDIEITHADTNAS
                     SDNADDGRTIQDVYDTMNEEQKQVVNFMIAEALATNEGDTAAQTALDNSDDTVAHGDT
                     KEDETNAELGNTTKEGKQMPETIKHNVFEDQGKDGEEKTSHVLSHSELNAIIEMAATK
                     KVSMKDAFTDYALQHGITDIETLFPDAKSITDVPDWDKRRTEWVATLIGAVRKSPFSR
                     IRTTTADITMEEARAKGYIKGNLKKEEFFTVARRSTTPTTIYKKQALDRDDVIDITDF
                     DVVAWLKGEMRLMLDEEIARAILVGDGRDISDEDKINEQNIRPIVSDNEMYTTTIYVN
                     VDNASSNMEEVVDEVIRQRAELKGTGLPNFYTTEAWIARFMTSRDNDRRRLYRTLDEL
                     AAELRVNAVIPVEVLLETPDIVGIMVNPVDYVLGADKGGQVTMFDDFDIDYNKQKYLI
                     ETRISGALTKLKSAMVIRATAAANQLVAPAAPAFNPTTGALTITNQTGVVYKHGATVL
                     NAAGSPYTVPDGQTWVVDATPAAGYYFETSEDDQWSFTNPA"
     gene            complement(4563..5807)
                     /locus_tag="VIJ87_06245"
     CDS             complement(4563..5807)
                     /locus_tag="VIJ87_06245"
                     /inference="COORDINATES: protein motif:HMM:NF016732.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HEY5444064.1"
                     /translation="MPFPFVTRFRQAWNNAFRYNEQVLDQNPQIVYDIGPSSSSAPQR
                     QTLRFTNERTIITSIYNRIAVDVAAITLKHVHLDEQDRYDSDIDSELTHCLLFEPNID
                     QGPRAFRQDICMTLFDSGAAAIVPVDYTISQIDPNQGMDILSLRVGDIKQWYPRHVKV
                     NVYNEDKGVREEILLEKRTTAIVENPLYSVMNAPNSTLQRLIRKLSLLDAVDEQSGSG
                     KLDLIIQLPYVIKSEARRQQAEKRREDIEFQLRDSRYGIAYTDGTEKITQLNRPAENN
                     LLKQIEYLTNMLYGQLGITEAVMNGTADEATMLNYYNRTIEPILEAIKENMQRSFLGR
                     PRVDANERIQYFRDPFRFVPVEKMADIADKFSRNEILSANEIRGHLGLVPSKDPKADQ
                     LVNSNMPQPNATATVPEPPSGS"
     gene            complement(5847..6302)
                     /locus_tag="VIJ87_06250"
     CDS             complement(5847..6302)
                     /locus_tag="VIJ87_06250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444065.1"
                     /translation="MKTYEEIGEYLEHRGLSDDEIDDFFEHHGVKGQKWGVRRAQKKA
                     AVGALRTEHLKALGPDRFGNRNQAQAQKNIDRIKRLAEGKGSKADKLIGGLFQVPVVD
                     IIGGGGLKGGAQLSVARVAKHKRKVEAGKRHVTDMLDRLGGIDVRELNV"
     gene            complement(6299..8032)
                     /locus_tag="VIJ87_06255"
     CDS             complement(6299..8032)
                     /locus_tag="VIJ87_06255"
                     /inference="COORDINATES: protein motif:HMM:NF042863.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="terminase TerL endonuclease subunit"
                     /protein_id="HEY5444066.1"
                     /translation="MTLSNTATPKYYGEFRDAVLRGEIPVNREVSMEMNRIDALIADP
                     NIWFDDRAVDGFVKYCEYELTLTDGGDLHLLDTFKLWSEQLFGWFFFIERSVYEPLTK
                     TYVKKLIKQRLVKKQYLIVARGAAKSMYAACIQGFFMTVDTSTTHQITTAPTMKQADE
                     VMSPLRTAITRARGPLFKFLTEGSLQNTTGNRFNRQKLASTKKGIENFLTGSLLEVRP
                     MAINKLQGLRPKVATVDEWLSGDIREDVVGAIEQGASKLDDYLIVAISSEGTVRNGSG
                     DTIKMELASILRGEYEAPHISIWHYKLDDVEEVGQPEMWVKANPNLGKTVTYDVYHLD
                     VERAEKAPASRNDILAKRFGLPMEGFTYFFTYEETIPHPKVEFWEMPCTLGADMSQGD
                     DFCAFTFLFPLSNGGFGVKTRSYITGLTLRNLPGAMRIKYDSFIAEGSLHVLEGTVLD
                     MMEVYEDLDTFILEANYDVRCLGFDPYNAKEFVSRWEAENGPYGIEKVIQGARTESVP
                     LGELKIFSEQRLLIFDQELMSFAMGNAVTLEDTNGNRKLMKKRVQDKIDNVSAMMDAY
                     VAYKANKEAFE"
     gene            complement(8044..8958)
                     /locus_tag="VIJ87_06260"
     CDS             complement(8044..8958)
                     /locus_tag="VIJ87_06260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444067.1"
                     /translation="MPFDITDEELDDFVEISDYVSHHGVKGQKWGVRRQQKKLAKADA
                     KWEKNLGSMHTFIAVHNRAADLANTLDIDRINNKPEYKGKKLLADMNDPITKKYMREH
                     EQAFNKRMDQAIKEIVGPNPSGTREVRVNIKTGETFFSDIQHVDGEPATVTVKFDELN
                     HIVEWIVTVNEVTQSDLDLTEEEVDEFLEHHGIKGQKWGVRRKSPHNDSFIPRMNPKK
                     LSDAELRAAVNRMNMEQQFSRLSKKPSKLKHGHDVVKGLLAVGVTVNSVIAFHNTPAG
                     AALEKALKKSRVGVAAKNLVERGLTTFG"
     gene            complement(8959..9351)
                     /locus_tag="VIJ87_06265"
     CDS             complement(8959..9351)
                     /locus_tag="VIJ87_06265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444068.1"
                     /translation="MESSILTSTKKVLGIADSYEVFDLDIITQINAAFSYLTQLGVGP
                     TEGFFIEDSSSEWEELNISPAQTALVRTYVFLKTQMYFDPPTLSFLIEMKNNQITELE
                     WRLTNWRDWENDPTDPMTVEVVLDEEVI"
     gene            complement(9369..10232)
                     /locus_tag="VIJ87_06270"
     CDS             complement(9369..10232)
                     /locus_tag="VIJ87_06270"
                     /inference="COORDINATES: protein motif:HMM:NF013625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding domain-containing protein"
                     /protein_id="HEY5444069.1"
                     /translation="MDDVLYPVGYRTEMVTLDELKRRFTPHMHPEAARRGFAFIESKG
                     GLIGIGSGYRAPGVQPNAPGFAAPGKSFHEGQQFPSGLYYVAWDMVAVNENGGNHRAP
                     RWAEVPRQGTDAAFDFGVHMNVGTESWHMQPIELDGWDSWVRAGRPDLGHFTFRDDQT
                     QPEPLPEPQPTPVPTPPDPTPIPVPEPPMPDPNPTPQPTPQPPAPTPQEITVQFTSRN
                     LQQGASGPDVKFYQGILNRIAGQELTEDGQYGAKTAQAVKNWQTFFGMTVDGVMGPNT
                     QRSLIEAALQH"
     gene            complement(10377..10790)
                     /locus_tag="VIJ87_06275"
     CDS             complement(10377..10790)
                     /locus_tag="VIJ87_06275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444070.1"
                     /translation="MAKIRTYSELIQYESFEDRFEYLKLGGSVGTATFGFDRYINQAF
                     YHSAEWKYIRRDVIVRDNGCDLGVPGREINASPLVHHINPLISDDLIHHEEWVLVPEY
                     LITTTQATHNAIHYGDRSLLPKLYVPRQPGDTKLW"
     gene            complement(10765..11091)
                     /locus_tag="VIJ87_06280"
     CDS             complement(10765..11091)
                     /locus_tag="VIJ87_06280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444071.1"
                     /translation="MKPLPRRALARTPEARENQVIADAIDLAEKQIREGTASSQVITH
                     FLKLGSTRERLEQVRLQREVELLTAKASQMADAKDIKELYQNAIDAFKVYSGQEVDNG
                     EDSNLF"
     gene            complement(11138..13039)
                     /locus_tag="VIJ87_06285"
     CDS             complement(11138..13039)
                     /locus_tag="VIJ87_06285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444072.1"
                     /translation="MRKATFGFVAARRPPSSVVIVNPDPPPPGPGPSGNLVTLGSATY
                     IHNTLKGWTSVHQQQRDSVSKVAIGDTAEIQNQHLVGFGASVDVEVKILEKALTSNVV
                     TLYTTDADGWSVGQKINVVGLGAPFDGTDLVITGLVTPDALPAQISYAKTAANVARSA
                     AASGAVARNFTFLDQTFGYPTKTTGYFSNSQYLCLTACGCPNYMKTPPSGSTPNPMGT
                     PSAASQSDMTSYVPPHWSYFPAFGDTIAACVARYADLTHIQVWNENKGFYITTQSSTS
                     SIVPAGSGLVADTTLGGNNNRWWTEGNTAMYNYIWDKCKAVRSSIFIVGPYCVYNSFA
                     GLTNSTDWSNDAFPLNLQGPWGYSDKKVLAHLMYFIKYCHGTDAICVDYRNLQKDSSV
                     ANFYNPASVPATPDPTNAFLSNPDGGAHARYWKEGYNDGAWTNGQRLPDLVAWLRALG
                     ASSTAYQRSVCDARTVNVWYAEWYAYSNREQFKHANPATGQYYTHPTSTWADDTAAWA
                     WGYVWTANSMSECAMGWKPEGTVQGNVVDPGDSNPLALYKDNDPSTAGRTPLYTVGKA
                     LKDYFPKGTQMYAFTSNMPTVWGFASNTMIMLVNRDPNPITFTLVNPKNTTPPTITLS
                     GYEVRFLAR"
     gene            complement(13041..14627)
                     /locus_tag="VIJ87_06290"
     CDS             complement(13041..14627)
                     /locus_tag="VIJ87_06290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444073.1"
                     /translation="MNNATLVSRTQRIIMNTATGSISVINAGPPGPPGSAGTDQHIVD
                     VIAAALSEGSGIAIDSATTPGEINITNTGAVTSYGDENVRDVLASTIIPATDEIAVTN
                     DDPGNTYTIGLASTFKDRILKLEQAKAILQYKDNIDASGGTPVMNINGTNNYVSTPSN
                     AAYDFAGQFQTLARIKMPSSAPGANWTIAGRYGASTAAGQWRFLITTAGQMQITVVNT
                     GGVSDTSTTTAAVPLAYDGNWIWVRQDHTTDGLTDFYTGVDDGTNTPPATWTSFQANR
                     AMTSGAPSTTSGAPLTIGAYNGGASSAFTGQIGRVIVYSGTLAGGTIVADANASDWTS
                     GTTWVGPASRTWTLNGTASITGGGSTGFSNTTSPFDLVTTDAFTGVAVTKGTTLLVSA
                     AGTWINTSGSTITHTPKIQVNGVDIFTFPAISVPSVAANRPYRWELELKVEVNKPDGT
                     KQICQANFVVYTDASSGDDLGSAVMTAPLSGTPLGGYRAGALTTFTSVPAMKLIDQMS
                     AASTGAQARPGLTQLALLAA"
     gene            complement(14624..14935)
                     /locus_tag="VIJ87_06295"
     CDS             complement(14624..14935)
                     /locus_tag="VIJ87_06295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444074.1"
                     /translation="MTDKIIVFKDRTNIVQVSLGINVSDDTITSQIRAYDGTLIAEWQ
                     VAFDNDGSDGELIFTLDDSAVAGITYQTGRMDIKRVSSGEPYPVGDELIEVEFRDSVT
                     T"
     gene            complement(14954..15418)
                     /locus_tag="VIJ87_06300"
     CDS             complement(14954..15418)
                     /locus_tag="VIJ87_06300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444075.1"
                     /translation="MKKRLLLATALLLAIPPTTAHADVEHQGPLSVLVTGATASAPAV
                     RLDPPQPPPEIPWVDNRTVEQMIRDVWPDALETRALKIAYRESRYVPTAHTWCCYGVF
                     QLYLTMHKDLFNSMGIYTKQDLYDPLNNVKAAYRLYLEAERVFGNGWQPWQT"
     gene            complement(15431..15916)
                     /locus_tag="VIJ87_06305"
     CDS             complement(15431..15916)
                     /locus_tag="VIJ87_06305"
                     /inference="COORDINATES: protein motif:HMM:NF024952.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2'-5' RNA ligase family protein"
                     /protein_id="HEY5444076.1"
                     /translation="MSDFSVLNNPNEVKRFEDSVMVALIPTTSDWCAIDLPHLTLVYA
                     GKIPDLPPTAFNELAKVALDIAFQFSPIVVDVLGTDTFGGGSDDNPMVDVLLLRPIEP
                     LLQMRMMLERWNASEHPFAPHVTVGPIGSGKDQTPDAIMFDRIMVAWGPEHLTYRLNL
                     I"
BASE COUNT         4280 a         3786 c         3468 g         4450 t
ORIGIN      
        1 cggaaaagca agaagattgt acaaaacatg aattttgtat cctgcatctc cagtttcatc
       61 gtttccaact tttgtacggt atgacaaacc aaatctgcta ggagtttgat ttgtaacaaa
      121 catgccgttg tttacttcca aagttccttc aaaaggtagg aactcatcag gataagtgta
      181 tgctttcaat gaagctgcaa aatctcctgg tacaacaaca tctgaatact tgatcccatc
      241 aaaatatagt ggatcttgac tgtttccagt aacttgttca tcaactgaaa taagtccatt
      301 ccaagcaatg cccaatccac ctggaagata caaaactcca cgatctacgc cactttcata
      361 aactcttgta cctggatcat cccatgttag aacggtcatt actcctccta tccagcggta
      421 ccaagttgtc gacggcgttg ttcgttcaaa gctcggcgag cttccaaatc actttgatta
      481 agtcgctttg atttaccgct ctgcttggaa ttcttaatgt tggcaatacg aatcaacgag
      541 aacaatcgat taagatgcca tctttcacat tcaaatggaa tgttaaaagc taccatccag
      601 taatagatta gttctgcagt tatcgtttcg cccttacctc ttggttttgg aagttcacca
      661 aaggtagttg ctgactgttt cgaattaata taattttgaa caatcacaaa attctcgaca
      721 ctcaacaaag cagcgacatt tgatgggtat tctggggtta caatcatagc aatgacataa
      781 tccagcatct cttgtccaga ctttgctgtg tctatcaaga acggcttctc gtgatctgac
      841 tcccattttg acactgagac cagagaatgt tctagctcta gcacaaaagc tggttgtgat
      901 ttaaacgttt gtgacgcttc atcaaacaat tcttgtgctt caatactaag tttgagcatt
      961 ctctggtctc cttgtgtcta aacgaatcag cttcgagtga agctccagtc gtcatcacta
     1021 gtcggagcaa gcacgtaggt aggcagagcc tctgcgttga tgacaagcgt ctgaccagac
     1081 acgggaatgg taactgtacc cgtgacaacg gcaccggtgt ctgcacgacg ataccgaaca
     1141 ccagtaacgg tcgggataac gatggcgcct gttgcggcgg taaagccagg cgtggttgct
     1201 gtaaccgcag ttgctccacc accagtgaac atgccgacaa cttcatcagg aagaggaagt
     1261 cgtgcgtcag taccaccagt accatagagc acgccctcga gggttgcgag ctcagcggga
     1321 tccaccttgg tcgaatcaat gacaatggtt gccgagggct tcataccggt cacagccacc
     1381 ggaacagttg agaaatccca actgaaggtg attgcttctg gtgtgtcgtt aacggtaccg
     1441 tatgcctttt ccgaggcggc tgcagttgca ccataaacca ggtgaagctt gtagccaaag
     1501 ttggtcgcaa tttcatcgtt accaaccatg gtacgatagc aaagaccaaa ctggcgacgt
     1561 ggctgctgac cgaccgcaat accaggctgc ggagtagcgc taccatcaca ctgagcgaat
     1621 tcgtcaggat aggtaaacgc ctcgatagtg ccaccaaagt cttccctgga aatcaggttc
     1681 aaatacttga tgttgtcggc aaacaacggc gtgggttctg cacccgaggg cgactcggta
     1741 acggttacaa gaccgttcca ggcaacacct tcgtcgtaaa tgccgtcagt tggaaggtaa
     1801 aggactccgt gatcaacgcc cgtctcatag agccgttcgc caacctggtc ccaaacaagg
     1861 gctgtcatgg ttgtttctcc ttaaaagaaa agtcggtata catcgtggtt gagattatca
     1921 gccgtatagg atcgatcgta cttgcacaac ggcaattgag cgactcgatc aggaatagga
     1981 ctatctggat cacgatcaat gaccgttacc atatatcttt ttccatatct atacggatag
     2041 ttatcagcaa agaacgtcaa cgcaaagtct cgatgataga caatgcacgg atattcaagc
     2101 ttcaagtccg gtggtggttg gaagtaaacg tgatcgttcc caagtattgc agcaaatatg
     2161 tcttggagat caactcgttg tcgaatcatc taatctccta ggctgtgggt ccattataga
     2221 cacttccaag agaaaggatg aggcgggggg ctcgaacgtc tacacttgta acagtccaga
     2281 gcaccccctc ccatcgaata tacctaatgg caaagaaatg ctttacggcg tattcatcag
     2341 caacaatgct gattgagttt tgcacggaaa tatcatcgtt caatccttcg cctttttcaa
     2401 gacgacgaac atttcgaaca acatctccat aatatgaaaa ctctgtgatc ttatccttcc
     2461 aaactcctga tcctggagga ttttcaatcg attcaccgta gccaattaca ccataaaact
     2521 ttgtcattag ttaacccttt ctcatgccgg gttggtgaag ctccactgat cgtcttcgct
     2581 ggtctcgaag tagtaaccgg ccgcaggagt tgcgtcgaca acccaggtct gaccatccgg
     2641 aacggtgtac ggcgagccgg cagcgttcag aacggttgcg ccatgcttgt aaacaacacc
     2701 ggtctgattg gtgatcgtca atgcaccagt tgtcgggttg aatgcaggag cggcaggagc
     2761 aaccagctga ttagcagctg cggttgcacg gataaccata gccgacttca gcttggtcag
     2821 tgcgcctgag atacgagtct cgatcaggta cttctgcttg ttgtagtcga tgtcgaaatc
     2881 atcgaacatc gtgacctgac cgcccttgtc agcgccaagc acgtagtcaa ccgggttgac
     2941 catgatgccg acgatgtcag gcgtctccag aagaacctca accggaatga ctgcgttaac
     3001 ccgaagttct gcagcaagct catcgagcgt gcgatagaga cgacggcgat cgttgtcacg
     3061 actggtcatg aatcgagcaa tccaagcttc tgtggtgtag aagttcggaa gacccgtacc
     3121 cttgagctca gcacgctgac gaatgacctc atcaacaact tcctccatgt tggagcttgc
     3181 attgtcgacg ttgacataaa tcgtcgtggt atacatctcg ttgtcgctga cgatcggacg
     3241 aatattctgt tcgttgatct tgtcctcgtc ggaaatatca cggccatcgc caaccaggat
     3301 tgcacgagcg atttcctcgt cgagcatgag acgcatctca cccttcaacc aagcaaccac
     3361 gtcgaaatcg gtgatgtcga taacgtcgtc acgatccaga gcctgcttct tgtagatagt
     3421 cgtcggggtc gtgctacgac gagcaaccgt gaagaactct tccttcttca agttaccctt
     3481 gatatagccc ttggcccgag cctcttccat ggtgatgtca gccgtggtcg tacggatacg
     3541 agagaatggg ctcttgcgca cagcaccgat aagagtggca acccactcag tgcgacgctt
     3601 gtcccaatcc ggaacgtccg taatcgactt ggcatccgga aacaatgtct cgatgtcggt
     3661 gatgccgtgt tgcagagcgt aatcggtgaa agcgtccttc atcgacactt tcttggttgc
     3721 agccatttca atgattgcat tcagttccga gtgcgaaaga acgtgagaag tcttctcctc
     3781 gccgtcttta ccctgatcct cgaagacatt gtgcttgatc gtctcaggca tttgctttcc
     3841 ttcctttgtg gtgttgccga gttcggcgtt ggtttcatct tctttggtgt cgccgtgggc
     3901 aacagtatca tctgaattat caagtgcagt ttgcgctgca gtatcacctt cattggtagc
     3961 aagtgcttct gcaatcatga aattaacaac ttgcttctgc tcttcattca tggtgtcata
     4021 gacatcttga atagtacgac cgtcgtctgc attatcggaa gacgcattag tgtcggcgtg
     4081 agtaatttca atatcttctc cggtgtagat gaaggcctca tcctcgagaa cttcatctcc
     4141 gtcagagtga cgaacagtca cactgtcgat aagtgcgcca ggatttgctc ctgcaagaac
     4201 aagactgact tcacgaataa cgccatgaag gaccttacca gctctctgaa tgagttgatt
     4261 tgcccaaatg gacatcatat gaatgtcacc atgctcaaga agctcacgag aatgatctgc
     4321 cttctgagaa ttgttcagga agcagtatgc ataaacgcct tccgggcgat tttcaaggat
     4381 tgcatgaccc agtacgtttt ctggatcagt atggccgtgt tgccaaacca acggaacttt
     4441 ttgcccatcc tgaggcttga atgcgtcagg catgatggtc ttaccatcag agcatctgag
     4501 tcccgcccga gtggcgtaac cgctgaaatc tggtttcatt ttgacgtttc ctttcaaaag
     4561 tcttaagacc cagatggtgg ttctggaact gttgctgttg cattaggttg tggcatgttg
     4621 ctgttcacta attgatcagc ttttggatcc ttggatggga ctagtcccaa atgccctcga
     4681 atctcattag ctgacaagat ctcattccgt gagaacttat cagcaatatc agccattttc
     4741 tcaacaggaa caaacctgaa cggatctctg aaatactgta tacgttcatt agcatctact
     4801 cgaggtcgtc ctaggaacga tcgctgcatg ttttctttga tagcttccag aataggctca
     4861 atggttcgat tgtaatagtt gagcatggtc gcttcatctg ctgtaccgtt cataacggcc
     4921 tctgtaatac ccaactgacc atacagcatg ttggttaggt actcgatctg cttgagaaga
     4981 ttgttctctg cgggtcgatt gagctgtgtt atcttttctg tgccatcagt ataggcaata
     5041 ccataccgac tgtctctaag ttggaactcg atgtcttctc gtcttttctc agcttgttga
     5101 cgtctagctt cagacttaat tacataaggt aattgaataa tcaagtccaa tttaccagag
     5161 ccagactgtt cgtcgacagc atccaataga ctcagtttcc taatcaacct ttgcagcgtt
     5221 gagttaggtg cgttcattac tgagtacaat ggattttcga caatagctgt ggttcgtttt
     5281 tctagaagaa tttcttcacg aacaccctta tcttcgttgt aaacattcac cttaacatgt
     5341 ctcggatacc actgtttaat gtcaccaaca cgcaaagaaa ggatgtccat cccttgattt
     5401 ggatctatct gtgatatcgt ataatcaact ggtacaatcg cagcagcacc tgaatcgaac
     5461 aacgtcatac aaatgtcttg acgaaatgct cgtggacctt gatcgatgtt tggttcaaaa
     5521 agcaaacaat gtgtaagttc gctatcaata tctgaatcat aacgatcttg ttcatctaga
     5581 tgtacatgct tcaaagtgat agcagcaaca tctacagcga tacgattgta aattgacgta
     5641 atgatggtac gttcattagt aaaacgaagc gtctgacgtt gaggagcaga actggaacta
     5701 ggaccaatat cgtatactat ttgaggattc tggtctagaa cctgttcgtt atatcgaaat
     5761 gcattgttcc aagcttgacg aaatcttgtt acaaatggaa atggcaagtt tgtacctcct
     5821 ttctagacga gatgcttatg gaagtactaa acgttcaatt ctcgaacatc aattccaccc
     5881 aaacgatcca acatatcggt tacgtgacgt ttgcctgctt caaccttcct tttgtgttta
     5941 gctacacgag caacagaaag ttgagcaccg cccttaagac caccgccccc aataatatcg
     6001 acaacgggta cttgaaaaag tcctccgatt agtttgtcag ccttagaacc ttttccttca
     6061 gccaaacgtt tgattcgatc aatatttttt tgagcttgag cttggtttcg attaccaaat
     6121 ctatctggac ccaacgcttt caaatgttca gttcgaagtg caccaactgc agctttcttt
     6181 tgtgctctac gaacacccca cttttgacct ttgactccgt gatgctcaaa gaagtcatca
     6241 atttcgtcat cagaaagtcc tcggtgttcg agatactcac caatttcttc atatgttttc
     6301 actcaaacgc ctccttgttc gccttgtacg ctacgtaagc atccatcatg gctgatacgt
     6361 tgtcaatttt atcctgaact cgtttcttca tgagtttacg gttaccgttt gtatcttcaa
     6421 gagtaactgc attacccatt gcaaaagaca tcagttcttg gtcgaatata agcaaacgtt
     6481 gttcactaaa tattttcaat tcgccaagag gaacagattc ggttcttgct ccctgaatta
     6541 ctttttcaat tccataagga ccgttttcgg cttcccaacg tgatacaaac tctttggcgt
     6601 tgtatgggtc aaatccaaga caacgaacat cgtaatttgc ttcgagaata aaagtgtcaa
     6661 gatcttcgta cacttccatc atgtccaaca cggttccttc aagaacatga agactgcctt
     6721 cagcaataaa cgaatcgtat ttgattctca tagccccagg aagatttctc aacgttaagc
     6781 ctgtgatgta acttcgtgtt ttgactccaa atccaccatt actcaatggg aataagaatg
     6841 taaatgcaca aaagtcgtcg ccctgcgaca tgtccgcacc aagcgtacac ggcatttccc
     6901 agaattcgac ttttggatgt ggaatagttt cttcgtaagt aaagaaatac gtaaaccctt
     6961 ccattggcaa tccaaatcgt ttagcaagaa tatcatttcg agaagctgga gctttttctg
     7021 ctctttcaac atcaagatga taaacgtcgt aagttactgt cttaccaaga ttaggatttg
     7081 ctttaaccca catctctggt tgaccaactt cttcaacgtc atcaagtttg taatgccaaa
     7141 tcgaaatatg aggtgcttcg tattctccac gtaggatact agcaagctcc atcttgatgg
     7201 tgtcaccaga tccgttacga acggttccct ctgaactgat tgcaacaatc aaatagtcat
     7261 caagctttga agcaccttgc tcaattgcgc ctaccacatc ttcacgaata tcgccagaca
     7321 accattcgtc aacagtagcc actttaggtc gaagaccttg aagcttattg atggccattg
     7381 gacgaacttc aagaagtgaa cctgtaagaa agttctcgat gcctttttta gttgaagcta
     7441 gtttttggcg attaaatcta ttaccagttg tgttttgaag agagccttca gtaagaaatt
     7501 taaataatgg tccacgagca cgagtgatag cagtacgaag cggcgacatt acttcatcag
     7561 cctgcttcat agtaggtgct gttgtgatct gatgtgtagt cgacgtatca acagtcatga
     7621 agaacccttg aatgcaagca gcatacatag atttggcagc acctcgagca acgatcaaat
     7681 attgtttctt aaccaatcgt tgcttaatca acttttttac ataagtttta gttaatggtt
     7741 catagacact tctctcaatg aaaaagaacc aaccgaatag ttgttcagac catagtttga
     7801 atgtgtccaa caaatgaaga tcgccaccat cagtaagtgt taactcgtat tcacaatatt
     7861 tgacgaatcc gtcaaccgct cggtcatcaa accaaatgtt aggatcggcg ataagtgcat
     7921 caatcctatt catttccatt gaaacttcac ggttgaccgg aatttcgcct cttaggactg
     7981 catctctaaa ctcgccgtaa tattttgggg ttgctgtatt cgacagagtc aagagacacc
     8041 tccttatccg aatgtagtca aacctctttc aactaaattt ttggctgcga ctcctactcg
     8101 tgatttcttc aaagcttttt caagtgctgc tcctgctggt gtattgtgaa aagcaattac
     8161 agaattaact gtaacaccaa cggccaaaag acccttcaca acatcatgtc catgcttaag
     8221 ttttgagggc ttcttactca aacgactgaa ttgttgctcc atgttcattc gattaacagc
     8281 agcacgaagt tcagcatccg acaatttctt aggattcatc cttggtatga agctgtcgtt
     8341 atgcggagac ttacgtcgaa cgccccactt ttgacctttg atgccgtgat gctctagaaa
     8401 ctcgtcgacc tcttcttcgg ttagatccaa atcgctttgc gtaacttcat taacagtaac
     8461 gatccattcc acaatatgat taagttcatc aaatttcacc gttactgttg ctggttcacc
     8521 atctacatgc tgaatgtctg agaagaaagt ttcgccagtt ttaatgttga cacgaacttc
     8581 tcttgttcca gaaggatttg gtccaacaat ttctttaatt gcttgatcca ttcttttgtt
     8641 gaacgcttgt tcatgctcac gcatatactt tttcgtgata ggatcattca tatcagcgag
     8701 aagtttcttg cctttatact caggcttgtt gttgattcga tcaatatcca aagtgttagc
     8761 caagtcagca gcacgattgt gtacagcaat aaatgtgtgc atactgccta aatttttttc
     8821 ccacttagca tcagccttag caagtttttt ctgttgacga cgtacacccc atttttgacc
     8881 tttgacgcca tgatgactta cataatcaga aatttcaaca aaatcatcta gctcttcgtc
     8941 ggtaatgtcg aatggcaatt aaatcacctc ctcgtcgagt actacttcaa ctgtcatcgg
     9001 atctgtcgga tcgttttccc aatcacgcca attcgtaagc ctccactcga gctctgtgat
     9061 ctgattattt ttcatttcga tcaaaaagct caaagtgggc ggatcaaagt acatctgcgt
     9121 cttgagaaag acataggtac gaaccaaagc ggtttgagcg ggagaaatat tcaactcttc
     9181 ccattcacta ctactatctt caatgaagaa accctcggtg gggccaactc caagttgtgt
     9241 cagatatgaa aacgctgcat tgatctgagt gatgatgtcc aagtcaaaca cttcgtagga
     9301 atcagcgatt ccaagtacct tttttgtgct agttagaatg ctgctttcca ttgccgcccc
     9361 cctttcgact agtgttgtag ggctgcttca atcaatgaac gttgtgtgtt tggtcccatc
     9421 acaccatcga cagtcattcc aaagaaagtc tgccaattct taactgcttg tgcagtcttt
     9481 gctccgtact gaccgtcttc agtcaattct tggccggcga tgcgattcag aattccttga
     9541 tagaacttaa cgtctgggcc agaggcacct tgctgaagat ttcgacttgt aaattgcaca
     9601 gtgatctcct gtggagtagg agccggcggt tgaggtgtcg gctgaggagt aggattggga
     9661 tctggcatag gaggctcagg caccgggatg ggtgttggat ccggaggagt aggcaccgga
     9721 gttggttgtg gctcagggag cggctctggt tgagtctgat cgtcacggaa tgtgaagtga
     9781 ccaagatcag gccgtcctgc acgaacccac gaatcccaac cgtcgagttc gataggctgc
     9841 atatgccaag actctgtgcc gacattcatg tgaacaccaa agtcaaatgc tgcgtccgta
     9901 ccttgccgag gaacttcggc ccaacgaggc gcacgatggt ttccaccgtt ctcgttgaca
     9961 gcaaccatgt cccatgctac atagtaaaga cctgaaggga actgttgtcc ttcatggaaa
    10021 gactttcctg gagcggcgaa gcctggagcg ttcggctgaa caccaggagc acgatagccg
    10081 cttccaattc caatcaatcc acctttgctc tcaatgaatg cgaatccacg acgagctgct
    10141 tctggatgca tatgcggagt gaatcgacgc ttcaattcat caagcgtgac catctcagtt
    10201 ctgtatccta ctgggtagag gacatcatcc attttgtctc cttagaatga ttttgaaacg
    10261 ggtgaagcgg acaaggataa atgtttgtac acggaactgg tccgttaccc tcatcggttg
    10321 gtgctccaca ttgaactttt tcaggcatat cacagagaac tttcacgaat tcctttctac
    10381 caaagctttg tatcacctgg ttgcctaggt acatatagct ttggcaataa cgatctatcg
    10441 ccataatgta tggcattgtg tgtagcttgt gttgtggtta tcaaatattc gggaacaaga
    10501 acccattctt cgtgatgaat aagatcatca gaaatcaatg gatttatgtg atgaacaaga
    10561 ggcgaagcgt ttatttctcg acctggaacg cccaaatcac agccattatc ccgaacaata
    10621 acgtctcttc ttatgtattt ccattcagct gaatgataaa atgcttgatt aatataacga
    10681 tcaaagccaa atgtagccgt gccaacactg ccaccaagtt tcaaatattc aaaacgatct
    10741 tcaaaagatt cgtattgaat aagctcagaa taagttcgaa tcttcgccat tatcaacttc
    10801 ttgtcctgaa tatactttga atgcatcaat agcattctga tatagttctt taatgtcctt
    10861 agcatcagcc atttgtgagg ctttagccgt aagcaattca acttctcgtt gcaaccgtac
    10921 ttgttccaaa cgttctcgag tagagccaag cttcaagaaa tgagtaataa cttgagatga
    10981 agctgtgcct tcacgaattt gtttctcagc aagatcaata gcatcggcaa taacttggtt
    11041 ttccctagct tctggtgttc ttgccagtgc acgacgaggc aacggtttca cgtctttgtg
    11101 acctctcgtt ggcataaaca cctccttgcc taaacggtca tcttgctaag aaacgaacct
    11161 catagcctga taaggtgatt gttggcggag tcgtgttctt agggttaacg agcgtgaatg
    11221 taattggatt gggatcacgg ttaaccaaca taatcattgt gttagacgca aaaccccaaa
    11281 ccgtcggcat gttagacgta aacgcataca tctgtgtacc ctttgggaag tagtctttta
    11341 aggcctttcc cacggtatac aacggagtgc gtcccgctgt cgacggatca ttatctttgt
    11401 atagagccaa tgggttagag tcaccaggat cgaccacatt gccttgtacc gttccttccg
    11461 gtttccagcc cattgcgcat tcagacatgg aattcgcagt ccaaacatag ccccaagccc
    11521 aagcagcagt atcatcagcc catgttgaag taggatgagt gtagtactga cctgtggctg
    11581 gattggcatg tttgaattgt tcacgattac tgtaggcata ccattccgca taccaaacat
    11641 taaccgtacg agcatcacag actgagcgtt gataggccgt tgatgaagca cctaatgcac
    11701 gcaaccatgc gactagatct ggtaaacgtt gtccattcgt ccaagcgcca tcgttgtaac
    11761 cctctttcca atagcgagca tgtgcgccac catcgggatt acttaagaat gcgtttgttg
    11821 ggtctggtgt agctggaaca ctagcaggat tataaaagtt agcaacgctc gaatcttttt
    11881 gtagattacg atagtcgaca caaattgcat ctgttccatg acaatacttg atgaaataca
    11941 tcaagtgcgc tagaactttt ttgtcactgt atccccatgg accctgaagg ttcaagggga
    12001 aagcatcatt agaccaatcg gtagagttgg tcaatccagc aaatgagttg tacacacaat
    12061 atggaccaac aataaagatg gatgagcgaa ctgctttaca tttatcccag atgtagttat
    12121 acatcgcagt gttgccctca gtccaccagc gattgttgtt accacccaag gtagtatcag
    12181 caaccaagcc tgatcctgca ggaacaatgc tagatgtaga agattgcgtt gtgatgtaga
    12241 aacccttgtt ctcattccac acttgaatat gggtcaaatc agcatatcga gctacacacg
    12301 cagcaattgt gtcaccaaaa gcagggaaat aactccaatg tggtggcaca taagacgtca
    12361 tatcagactg cgaagcagcc gatggtgtac ccattgggtt tggtgtagac ccactaggcg
    12421 gagtcttcat gtagttcgga caaccacaag cagtcaaaca tagatactgc gagttagaga
    12481 aatatccagt agtcttggta ggataaccaa atgtttggtc caagaacgtg aagttacgag
    12541 ctacagcacc agaagcagca gcggatcgag ccacgtttgc tgcagtcttt gcataactaa
    12601 tctgtgcagg aagggcatcg ggtgtaacaa gacctgtaat aacaaggtct gttccatcga
    12661 atggcgcacc tagcccaaca acattaattt tctgaccaac agaccagcca tcggcgtcag
    12721 ttgtgtacag agttacaaca ttgctcgtaa gggccttctc taggatcttg acttcaacat
    12781 ctacagacgc tccaaaacca acaaggtgtt ggttctgaat ttcagctgta tcaccgatcg
    12841 ctactttgga aacagaatca cgctgttgtt gatgaaccga agtccatcct ttaagtgtgt
    12901 tgtgaatgta agtcgcagaa cctaaggtta caagattacc agagggtcct ggacctggag
    12961 gcggtggatc tggattaaca ataacaacag aactaggagg acgccttgcg gcaacgaaac
    13021 caaatgtagc ttttctcatg ttaagccgcc aagagtgcta gttgtgtaag acctggacgt
    13081 gcttgtgcac cagtacttgc tgcgctcatt tgatcaatca acttcattgc aggtacactt
    13141 gtaaaggttg tcaacgcacc ggcacgataa cctccaagag gagttcctga caaaggcgca
    13201 gtcattacag ctgaacccaa atcgtcacca ctacttgcgt ctgtataaac cacaaagttt
    13261 gcttgacaaa tttgtttggt cccatctggt ttgtttactt ccactttcaa ttccaattcc
    13321 catcgatatg gtctgtttgc agccacagat ggtacagaaa tagctgggaa agtaaagatg
    13381 tcaacgccat taacttgaat ctttggagtg tgagttatag tactaccaga cgtattaatc
    13441 catgttcctg cagcagacac caacaaagta gtgcctttag taacagcaac accagtaaat
    13501 gcatcggttg tgactaaatc aaacggagaa gtggtgttac tgaaaccggt tgagccgcct
    13561 ccagtgatag aagcagtacc attcaatgtc caagtacgac ttgcgggacc aacccaggtt
    13621 gtaccacttg tccaatctga tgcgttagca tctgcaacaa tagtgccgcc tgcaagagta
    13681 ccagagtaca caataactcg accaatttga ccagtaaaag cagatgaagc gccaccgttg
    13741 tatgcaccaa ttgtcaaagg agcacccgac gtagtacttg gggctccaga agtcatagct
    13801 cggtttgctt ggaacgaagt ccatgttgca ggaggagtgt tagtaccatc atcaacgcca
    13861 gtataaaagt cagtaagccc gtcggtggtg tgatcctgtc ttacccaaat ccagttacca
    13921 tcatacgcaa gtggtactgc agcagtggtt gttgaagtgt ctgaaacacc acccgtgttg
    13981 acaaccgtta tctgcatttg cccagcagtt gtgatcaaaa atcgccattg ccctgccgca
    14041 gtggacgctc catatcgacc tgcaattgtc cagttcgcac caggagcact agatggcatt
    14101 ttaattctag caagcgtttg aaactgtcct gcgaaatcat atgccgcatt acttggagta
    14161 ctaacatagt tgttagtacc attaatgttc atcaccggtg tgccaccact ggcatcaatg
    14221 ttatccttat actgaagaat tgccttggct tgctccagtt tgagaatacg atctttgaat
    14281 gtactagcaa gaccgatcgt atacgtgttg ccggggtcat cattagtcac agcaatttca
    14341 tctgtggccg gaatgattgt agacgccaag acatcacgaa cgttttcgtc gccgtaacta
    14401 gtaactgcac ctgtgttggt aatgttgatt tcaccaggcg tagttgcact gtcgatcgca
    14461 atacctgagc cttcactgag tgctgcagcg atgacgtcaa caatgtgttg atcagttcct
    14521 gctgagcctg gaggcccggg aggtccggcg ttaatgacac taattgaacc agttgctgtg
    14581 ttcataatga tcctttgagt acgagatacc aatgttgcat tgttcatgtc gtcaccgagt
    14641 ctcggaattc aacttcaatt agttcatcac cgaccggata gggttctcca ctggacactc
    14701 gtttgatgtc cattcgtcct gtttgatatg taatacctgc caccgcagaa tcatctaagg
    14761 tgaagataag ttcgccatcg cttccatcat tgtcaaaagc gacttgccac tcagcaatta
    14821 aagttccatc gtatgcacga atctgacttg taatcgtatc gtcagaaaca ttgataccca
    14881 aacttacctg aacgatgttc gtcctatcct tgaatacgat tatcttgtca gtcatcggag
    14941 gaatccttcc ttgtcaggtt tgccatggtt gccaaccgtt accaaaaact cgttcagctt
    15001 ctaggtaaag tcgataggca gctttaacgt tgttcaacgg atcgtacaga tcctgctttg
    15061 tgtagattcc cattgagtta aacaggtctt tatgcatcgt tagataaagt tggaacaccc
    15121 catagcaaca ccaagtgtgc gctgtaggaa cgtatcgact ttctctataa gcaattttta
    15181 aagcccttgt ttccagagcg tccggccaga cgtctcgaat catttgttca acggttcgat
    15241 tgtctaccca tggaatctct ggaggaggtt gtggtggatc aagccgtacc gctggcgcag
    15301 aagctgtagc tcccgttact agtacggaca atggtccttg atgttcaaca tcggcgtgtg
    15361 ccgtagttgg tggtattgca agcagcagcg ctgtcgccag tagcagacgc tttttcattg
    15421 tgtctcccct ttaaatcagg ttcaaccgat aggttaagtg ttctggaccc catgcgacca
    15481 tgattcgatc aaacatgata gcatcgggcg tttggtcctt gcctgaccca ataggcccga
    15541 cagttacatg cggtgcgaaa ggatgctcgc tagcgttcca gcgttccaac atcatcctca
    15601 tctgtagtaa aggttcaatt ggtcggagga gaagaacatc aaccataggg ttgtcatctg
    15661 atccaccacc aaaagtatct gtgcctagca catcaactac gataggagaa aactggaatg
    15721 ctatatcaag agcgaccttg gctaattcat tgaatgccgt gggtggaaga tcgggaatct
    15781 ttccggcata caccaacgtc aggtgcggaa gatctatcgc acaccaatcg gacgttgtcg
    15841 gaatgagcgc caccatcaca ctgtcttcga aacgcttgac ttcgtttgga ttgttgagta
    15901 cactgaagtc actcacctgc actcctttcg gctatagaaa gttaaaaaca ttgtgccaaa
    15961 actccccccg gggaaaaaat atag
//
LOCUS       DATCGC010000658         1106 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_208620, whole genome shotgun sequence.
ACCESSION   DATCGC010000658 DATCGC010000000
VERSION     DATCGC010000658.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1106)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1106)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1106
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_208620"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1106
                     /locus_tag="VIJ87_06310"
     CDS             <1..>1106
                     /locus_tag="VIJ87_06310"
                     /inference="COORDINATES: protein motif:HMM:NF022750.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3108 domain-containing protein"
                     /protein_id="HEY5444077.1"
                     /translation="TYIDPQTGLPFRSEQVVRDAINSSESFHEFNQTAGAPDVSQKQS
                     SIPGKFDLLSVVYRLRSLPLNDGAKYAFGVWTETEEYQIELRVTGKEVVRTNIGTFNT
                     VATEVRVSTAARTYKIKARFSEDERHVPVLLTAKVSDGEIRAELAGSVVAEPPAPAAT
                     PTPSAGPATTPRPTVPAAVPSHDENWPFTIGEELNYRVFLGDSNTPVGTATFQVRGRS
                     RYFERDGLLLTVKAQTTGTVARVFVANDQISTYVDPKALLPYRTEMNLIEGKRRKNQT
                     LTINQDSGAATTSSGQRIVIPVGTHDYLSFFYALRTFNLAPQRRNAISILVEDAPKTL
                     AVIALKREMIGLGQQTLPAIPLTLTTPEDPQNDK"
BASE COUNT          282 a          300 c          284 g          240 t
ORIGIN      
        1 ccacatacat cgatccgcag acgggtttgc cgtttcgctc cgaacaggtt gttcgcgatg
       61 ctatcaattc gtctgaaagc ttccatgagt tcaatcaaac agcaggtgcc cctgacgtat
      121 cgcaaaagca atcaagcata cccggtaagt ttgatcttct gtctgttgtc tatcgactga
      181 gatcgctgcc gcttaatgat ggcgcaaaat acgcgttcgg cgtctggacc gagaccgagg
      241 aatatcaaat cgaacttcgg gtcaccggca aagaagtggt caggacgaac atcggaactt
      301 tcaacacagt ggccacagag gttcgcgtat cgactgctgc tcgtacctac aagattaagg
      361 cgcggttcag tgaagacgag cggcacgttc cggttttgct aactgcaaag gtaagcgatg
      421 gcgaaattag agctgagctt gcggggtcag tcgtagcgga accgccagcc cctgctgcaa
      481 ctccaactcc gtcagctgga ccagcgacaa ctccgcggcc gactgttcca gcagctgttc
      541 cgagtcacga tgagaactgg ccattcacta tcggagagga acttaattat cgagtgtttc
      601 tcggagatag caatactccg gtgggtacgg caacgtttca agtgcgaggt cgttcgcgat
      661 acttcgaacg ggatggctta ttgctcacgg tgaaggcgca aaccacggga accgtcgcgc
      721 gagtgttcgt cgctaatgac cagataagta cctacgtcga tccaaaagcg ctacttcctt
      781 atcgaactga aatgaatctg attgaaggca aaaggcgaaa gaaccaaacg ctcacgatca
      841 atcaggactc tggcgctgcc accacgagca gcggccaacg cattgtcatt ccggtcggca
      901 cgcacgatta cctatcgttc ttctatgcgt tgcgcacatt caatctggct ccgcaacgtc
      961 gaaatgccat ttcgattctg gtagaagacg ctccgaaaac cctggcggtc attgcactca
     1021 aacgtgagat gattggcctt ggccaacaga ccctacctgc cattcccttg acgttgacga
     1081 cgccggaaga tccacagaac gacaaa
//
LOCUS       DATCGC010000659         1034 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_142351, whole genome shotgun sequence.
ACCESSION   DATCGC010000659 DATCGC010000000
VERSION     DATCGC010000659.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1034)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1034)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1034
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_142351"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            70..146
                     /locus_tag="VIJ87_06315"
     tRNA            70..146
                     /locus_tag="VIJ87_06315"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:104..106,aa:Ile,seq:gat)
     gene            157..232
                     /locus_tag="VIJ87_06320"
     tRNA            157..232
                     /locus_tag="VIJ87_06320"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:190..192,aa:Ala,seq:tgc)
     gene            406..>1034
                     /locus_tag="VIJ87_06325"
     rRNA            406..>1034
                     /locus_tag="VIJ87_06325"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          254 a          264 c          306 g          210 t
ORIGIN      
        1 cacctgcggt gcccacgcct atcggttgca gtgagccttc gaaggctcgc gacaacgcgc
       61 acccgacccg ggtttgtagc tcagttggtt agagcaccgt cttgataagg cgggggtcga
      121 tggttcgaat ccatccagac ccaccaagaa ctacgcgggg ctgtagctca gttgggagag
      181 cacctgcttt gcaagcaggg ggtcgtcggt tcaattccgt ccagctccac caaaccaagc
      241 ttcgcttgag ccgtttacca cggtcattga tcttgtacgt tcgttccagt tgagtgttgc
      301 tcgacgtcct ctaggcagtt gcgctgatga tcgaatcatc ggcgtcgttc tttgacaact
      361 gaataggtct tgatgaaaga ccatgtgtat caggagcaaa gtgattgtta agctactaag
      421 ggtgtacggt gaatgccctg gcatcagcag gcgaagaagg acgtagctag ctgcgataag
      481 cctcgggaag ccgcaagcag gccgtgatcc gaggatctcc gaatggggaa acccaggcga
      541 tgaatgccgc ctatccgcgt ctgaatccat aggacgcgag aagcccacgc agggaagtga
      601 aacatctcag tacctgcagg aacagaaatc aattgagatt cccccagtag tggcgagcga
      661 aaagggaaca gcccaaacca cagtgatgtc aagcccgtgt gcgttgtcgc tgtggtgttg
      721 taggtcttcg tcggacggtg atacggcgcc gtcggcaagt caaaaactag gatcttagcc
      781 aaacggtctg gaaaggccgg ccatagaggg tgacagcccc ttaagcgaaa tcttcttggc
      841 tccgacgggt accctgagta ccgcgggaca cgagaaatcc cgtgggaatc tgcgaggacc
      901 atctcgcaag gctaaatact ctctagcgac cgatagtgaa ccagtaccgt gagggaaagg
      961 tgaaaagcac ccctgtgagg ggagtgaaat agttcctgaa accgtatgcc tacaagcagt
     1021 gggagggcta tgcc
//
LOCUS       DATCGC010000660         1794 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_275343, whole genome shotgun sequence.
ACCESSION   DATCGC010000660 DATCGC010000000
VERSION     DATCGC010000660.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1794)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1794)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1794
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275343"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..841)
                     /locus_tag="VIJ87_06330"
     CDS             complement(<1..841)
                     /locus_tag="VIJ87_06330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444078.1"
                     /translation="MRKTKRDQLLLETKPAPHRTLMNPRLLNEGAENSLPLVSFRDPS
                     GQLIVTNDRVLRVVSDDSQATVRRFLDSPLKAALVEEQILIPTTEIMDGAVGSELREL
                     SFFETETPLVLEHEPIVFASYPYEWPPEMLYAAGELTLNLMERVLVEGFGLKDATPYN
                     VLFRGPKPIFVDFLSIEERDPLNPTWLAYAQFARTFIRPLLANKYFGLGLDQVFRVYR
                     DGLQPDQVFRMCSLRQKFHPLFLSSVSLPALLSRMNPKRYDKIYRPRQSRSKEEAHFV
                     LHRQ"
     gene            complement(801..992)
                     /locus_tag="VIJ87_06335"
     CDS             complement(801..992)
                     /locus_tag="VIJ87_06335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444079.1"
                     /translation="MSSEFVSIRVFLLYADPGSGMLLWQLITATALGLLFYARTIIRK
                     IRARMGHAQDETRSTSARD"
     gene            complement(1226..>1794)
                     /locus_tag="VIJ87_06340"
     CDS             complement(1226..>1794)
                     /locus_tag="VIJ87_06340"
                     /inference="COORDINATES: protein motif:HMM:NF014017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HEY5444080.1"
                     /translation="TFYRMPQPGMVESWRAQVPDGFRFSVKASQRITHFKRLKEAGDE
                     TKFMLETIAVLENRLGVVLFQLPPNMKKDIERLESFLPHLPTQIRAAFEFRHPTWLED
                     DVLELLRHHNRALCVSDTDDLPVSRIEPTADWGYLRLRRVNYTDAALKEWVKRVQAQK
                     WDSTFVFFKHEDEGTGPKLAANFLGLCK"
BASE COUNT          473 a          448 c          437 g          436 t
ORIGIN      
        1 tttgccggtg cagaacgaaa tgcgcctctt ccttggaccg agactgcctg ggacgatata
       61 tcttgtcgta gcgcttcgga ttcatccgtg agagaagcgc gggcagtgat actgaactta
      121 aaaacagtgg atgaaacttc tggcgcaaac tacacatgcg aaacacttga tcaggttgta
      181 atccatcgcg ataaactctg aatacctggt cgagacctaa accaaaatac ttgtttgcta
      241 agagcggtcg gataaaggtc cgggcaaact gcgcataagc cagccaggtt ggattgagtg
      301 gatcgcgttc ttcaatcgac aaaaaatcta cgaagatcgg tttcggtccg cgaaacaaaa
      361 cgttgtaagg agtcgcatcc tttaacccaa aaccttcgac aagcactctc tccatcaagt
      421 tcagagttaa ctcacctgcc gcatacaaca tctcgggcgg ccattcgtaa ggatagctcg
      481 caaaaacaat cggttcatgt tccaggacca gcggcgtttc tgtttcaaag aaagacagtt
      541 cgcgcaactc tgagccaaca gcgccatcca ttatttcagt tgtcggtatg agaatctgtt
      601 cctcaacgag cgcggctttg agtggtgagt ctaaaaaacg cctgactgtg gcctgtgagt
      661 catcgcttac gactcgcaga actcggtcat tggtaacaat gagctgtcct gaaggatcgc
      721 gaaaggaaac taacgggagt gaattctccg cgccctcatt cagcaatcgg ggattcatca
      781 atgttcgatg tggcgcaggc ttagtctcga gcagaagttg atctcgtttc gtcttgcgca
      841 tggcccatac gcgcgcgaat ctttcggata atggttcgag cgtagaacag caagccgagt
      901 gcggttgcgg taatcaactg ccagagcagc attccggagc cagggtcggc atacagtaag
      961 aacacacgaa tagacacaaa ttcagacgac atgctgagac ctttcaattt tgggcggggc
     1021 agttttgagg agacgaacct ttggggccat gttcgaagcg tttcgagacc taacacatct
     1081 tagacgattc gaacttgatt aaagttgaga aactgttgga ctaaatctca gtaatccctc
     1141 acttgaatca caaaggcaat gtagaccata tttagtttaa cagtcgttgt aattcagcgg
     1201 cgtttttgtg tcagcctatc ctgatctatt tacaaaggcc caggaagttc gcggctagct
     1261 tcggaccagt gccttcatct tcgtgcttga aaaacacaaa ggttgaatcc cacttctgcg
     1321 cctgcacacg cttaacccat tcttttaacg cggcgtcggt gtaattcact ctgcgcaatc
     1381 gcaagtatcc ccagtcggcc gttggctcga tccgactaac aggtaagtcg tccgtgtctg
     1441 aaacacaaag agcccggttg tgatgccgca acaactcgag cacatcatct tcaagccagg
     1501 ttgggtggcg aaactcaaac gccgcccgaa tctgcgtcgg cagatgaggg agaaacgatt
     1561 caagtctttc gatgtccttt ttcatattcg gaggaagctg aaacaaaacc acccccagcc
     1621 gattttccag gaccgcgata gtttcgagca taaacttcgt ttcgtcgccg gcttctttca
     1681 atcgcttgaa gtgagtgatt ctctgagacg cttttacaga gaagcgaaag ccgtcaggca
     1741 cctgtgctct ccaactctca accatgcctg gttgaggcat tcgatagaac gtgt
//
LOCUS       DATCGC010000661         2580 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_242552, whole genome shotgun sequence.
ACCESSION   DATCGC010000661 DATCGC010000000
VERSION     DATCGC010000661.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2580
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_242552"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..901)
                     /locus_tag="VIJ87_06345"
     CDS             complement(<1..901)
                     /locus_tag="VIJ87_06345"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEY5444081.1"
                     /translation="MKSLGTGRISRLKMFLSLTLLVAFVSGCHAQSGMMSLASGQPTV
                     APASGVAPSQTSYADLVTRVSPAVVTIRSTERARAAQQFPFMDDPSFREFFGDRMPQQ
                     APQRVQGVGSGVIVNADGYILTNHHVVDGALDIRVELTDNRSFKAKLVGSDQPSDLAV
                     LKIEAQNLPTLFLGDSDKVRVGDFVLAVGNPMGIGQTVTSGIISAKGRQTGLSDGSFE
                     DFLQTDAAINRGNSGGALVNTNGELVGINSQILSPSGGNIGIGFAIPSNMAKAVMDQL
                     LKTGKVRRGMLGVTIQSVDADLAA"
     gene            1429..>2580
                     /locus_tag="VIJ87_06350"
     CDS             1429..>2580
                     /locus_tag="VIJ87_06350"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY5444082.1"
                     /translation="MSGVQISNGHDDNSVLIVNDAPEQLVLMQNLLRKAGYSVITAED
                     GVQGLTLAKQKRPDLVISDVSMPRMNGLEFCEHLRADSALKSVPILLISAQQKDTESV
                     VAGLRAGADDYLEIPFDSTRLVAKVARLLERSRLETSYRDLVENASDLIFTNDLAGKL
                     TSINMSVATFLGKDVQELVGESFFTAFGIVPESNGFAGSLKRPQEVAEFRHQFVTRSA
                     SGDNRWLDLIISPIKDKLDETTGFRGVARDITERKSFEEALQDSESRYKLLFESTPQP
                     IWVYNEETLGFLAVNEAATRTYGYSREEFLSMTIASLRAKEDIPALLIKNADDANDLV
                     LSSPWRHQTRDNKTIYVEMSSHPVVFDGKHSKLVIVNDVTERKLLDEKQR"
BASE COUNT          640 a          693 c          641 g          606 t
ORIGIN      
        1 tggccgccag atccgcatcg accgattgaa tcgtgacgcc aagcatgccg cgccgtactt
       61 ttccggtttt cagcaactga tccatgaccg ccttggccat gttggaagga attgcaaacc
      121 cgattccgat gttgccgccc gagggcgaaa gaatctgcga gttgatcccc actagttcgc
      181 cgtttgtatt aacgagcgcc ccaccggagt taccccgatt gatggccgcg tcagtctgga
      241 gaaagtcttc aaaacttccg tcgctcagcc ccgtttgacg accctttgca ctaatgattc
      301 ccgacgtcac tgtctgtccg atacccattg ggttaccaac cgccagaaca aaatctccga
      361 cgcggacctt atccgaatcg ccaaggaaca gcgtcggcag gttttgagcc tcgatcttca
      421 agacagccaa gtcgctcggt tgatcggaac caaccagctt agccttaaag cttcggttat
      481 cagtcagttc cactcggata tcgagggcac cgtctacgac gtgatgattg gtcagaatgt
      541 agccatcggc gttaacgatg accccggagc cgacgccttg gactcgttgt ggtgcctgtt
      601 gcggcattcg atccccaaag aattcgcgaa agctcggatc gtccatgaat gggaactgct
      661 gagcggcccg cgcccgctcc gtcgagcgaa tcgtgactac cgccggcgag actcgcgtta
      721 ccaggtcagc gtaagaagtc tgcgaaggcg cgactccact ggcgggggcg accgttggtt
      781 gtcccgaggc cagactcatc attccgctct gggcgtgaca cccacttacg aatgcaacta
      841 acaaagtcaa actcaaaaac atcttcaatc gggagatcct cccggtaccc aaactcttca
      901 taatttctcc atttctcaat tatttatctc aatactgccc cacaatggat ggagccgtac
      961 gatgaattaa ttcaaccaat ttctgtctgc gacagatgtt tagccattac gtttggattc
     1021 accgagactc gattaggttt acctcggcgg agactaactt taggccgggc ctttctctca
     1081 aaccacgcca tcatcgaggt ggttatcggg aaaatcgacc cgaataagtg tgtctactag
     1141 atggccaatg ctctctgagg gttggtgagt tgaagtcctc agaaatgtcg ggaatcgagg
     1201 cccatgaact tggttttttg agagtgctat taggaagtgt ttgagacctg gtacggacag
     1261 ccactttgag atatcggatc tgaaggcgtg tgttatactg cgccgcataa atcgcctttt
     1321 gctttctatt tctgagccga catcgaaata gatagtcacc tagtccgcat gaggggcagt
     1381 tcgccagcga gttccaaatc atagcgacgc aaagaggtcc gactccgaat gtctggggta
     1441 caaatctcca atggccacga tgacaattct gtgttgattg tcaacgatgc acctgaacag
     1501 cttgtgctaa tgcagaacct gctgcgcaaa gctggatatt ccgttattac cgcggaagac
     1561 ggagtccagg gacttactct agccaaacaa aaacgtcctg acctcgtcat tagcgatgtc
     1621 tccatgccgc ggatgaatgg cttggagttt tgtgaacatc ttcgggcaga cagtgctctc
     1681 aagtccgtcc ccattctctt aatcagcgct cagcagaagg ataccgaaag cgtagttgcc
     1741 gggctgcgag caggcgccga cgactacctg gagatacctt ttgactccac gcgactggtt
     1801 gccaaagttg cgcgtttgct cgagcgttcg cgattagaga ctagctatag agatctcgtc
     1861 gaaaatgcga gcgacttgat tttcactaac gatctcgcgg gtaaactgac gagcatcaat
     1921 atgtccgtag caacgtttct gggcaaggac gttcaagaac tagtaggtga gtcgttcttc
     1981 accgcctttg gtatcgtccc agaaagcaat ggttttgccg ggagtctcaa gcgtccgcag
     2041 gaagtggcgg agtttcgtca tcagtttgtt acccgctcag cctccggtga taatcgctgg
     2101 ctcgatctca taatttcccc aattaaagat aagctcgacg aaacaaccgg ctttcgcgga
     2161 gtggcccgcg acatcacgga aagaaaaagc tttgaggaag cactccaaga ctcggaatcg
     2221 cgctacaaac ttctattcga atcaacccca cagccaatct gggtctacaa cgaagaaacg
     2281 cttggtttcc tggcggtcaa cgaagccgca actcgaacct atggttattc ccgggaagag
     2341 tttctttcaa tgaccatcgc cagccttcga gcaaaagaag acattccagc gttgttaatt
     2401 aagaacgctg acgacgcgaa cgacctggtc ctctcaagtc cgtggagaca ccaaactcgt
     2461 gacaacaaga cgatctacgt tgaaatgtct tcgcacccag tcgttttcga cggaaagcac
     2521 agcaaactgg ttatcgttaa tgatgtcacc gaaagaaaac tcctcgacga gaagcaacgg
//
LOCUS       DATCGC010000662         1260 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_208624, whole genome shotgun sequence.
ACCESSION   DATCGC010000662 DATCGC010000000
VERSION     DATCGC010000662.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1260)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1260)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1260
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_208624"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(458..907)
                     /locus_tag="VIJ87_06355"
     CDS             complement(458..907)
                     /locus_tag="VIJ87_06355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444083.1"
                     /translation="MKSPMLIGMALSALLSCPLLSVAQEPAVSGEKSVNFPLSVKCSA
                     NSPCTNITGEITRIEESYWITTPEGRETHLKVTSDTKMEQLPKVGDRIAAQLTSTGDA
                     NAIATLEELPKPKDLRLPGHSQKEVRESMSVPPSAEGNMEPDSTLNR"
BASE COUNT          303 a          290 c          342 g          325 t
ORIGIN      
        1 cgaccacaag gagaaaccat tgcaaaccac ggcctactaa ttaaggcacg attgcaacgt
       61 ggtgcaaaag cggtagcgcc tggtataacc tgaagtagag ggctcggttc cggaaggggt
      121 cgggcccttt ttttttaatc cgatgatgga tcatgactga ggcgatcggt ggggtgaatc
      181 atctattcat cgaaccatga aaggcggtca tattatgtcg ctgcgcaaag aggtgaaaga
      241 gtacattcgc tcttgtgaac agctgttgtc agatgctgcc ctttcgaccg agacatcatt
      301 ttcggctgaa gaatgcggaa gcagtgagta ctatactgcg gaagtgacga aactcatttc
      361 ctccaagcga tatagagaga cctcgatagt catctagcct ctatctaggg tgcgaggccg
      421 atcatgctgc acctaggggg agccgccatt ttagtaatca gcgattgagc gtggaatcag
      481 gctccatatt gccctcggct gagggaggca cggacatact ctctcgcacc tctttctgtg
      541 aatggcccgg aagtctcaga tccttgggct ttggcagttc ctcgagtgtt gcaatcgcat
      601 tcgcatctcc ggttgaggtc agttgtgcag caatcctgtc accgactttt ggcaactgtt
      661 ccattttggt gtcactcgtc actttcaagt gagtttccct tccttctggc gtggtaatcc
      721 agtaggattc ttcaatcctg gtgatttctc ccgtgatgtt ggtacagggc gaattcgctg
      781 agcatttaac gcttaacgga aaattcacag acttctctcc ggataccgct ggttcttggg
      841 ctactgagag cagggggcag ctcagcaggg ccgacagggc cattccgatc agcatgggcg
      901 atttcatgtg gcactccttg attgaggtgg gtaaaaatga ttcatttcga tgcctctggc
      961 tactgctgta tgtgcgctca gtctatcgag gaagcagtat ggcgaaaacg cggaatgccc
     1021 ctagttcgaa acgaatgatt tatgaaaatg tgcaggatgg cttaatgggt tatcggatta
     1081 ttggaagagc cggtgaaaca gggcgatgat gcaccttgaa tcaagattcc acgcttaatg
     1141 tacgtccagg actttgacat cacagaagag agtttcaccg gcaagaggat gattaaagtc
     1201 caggagcacg gtctggtctt taatctcttt cacaaccggt tgaacgacac gaccgctagg
//
LOCUS       DATCGC010000663         1914 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_408275, whole genome shotgun sequence.
ACCESSION   DATCGC010000663 DATCGC010000000
VERSION     DATCGC010000663.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1914)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1914)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1914
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_408275"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..243)
                     /locus_tag="VIJ87_06360"
     CDS             complement(<1..243)
                     /locus_tag="VIJ87_06360"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5444084.1"
                     /translation="MSPQSAATSKEEKKVENKEVRILVVDDEPMMADSLRQNFIEEGY
                     SVDTAATGAAAIELFDQGGHHLAICDLQLPDMDGLEV"
     gene            complement(281..952)
                     /locus_tag="VIJ87_06365"
     CDS             complement(281..952)
                     /locus_tag="VIJ87_06365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444085.1"
                     /translation="MKPLSTGTADGSTLQELGKASIQIVHDLKNQLNGLKLYATFLRR
                     RIEKSERPEDEQQTIMKLMAGLDRAANDLSTIVQYGRPIELKKQPGFDLQKVVRSICS
                     QLNDSASPVVCEAESEPLVGNLDPTRLTDALNWISTGALKHQQNGDAPGVITVMVRRS
                     EHAADEATIEWLGLAPIDHDPFRSFVGSDEIRMSLAAKIVEAHGGSAQYEDSRFLVTV
                     PLAQE"
     gene            1184..1570
                     /locus_tag="VIJ87_06370"
     CDS             1184..1570
                     /locus_tag="VIJ87_06370"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5444086.1"
                     /translation="MNSKQTELSLLLVEDTEDNRFMMRRLLEMEGYRVVEARNGEEAV
                     KIAQSENPDLILMDLSLPIIDGLAATRLIRQLPQFKETPIIAVSAHDTADFQDDALAA
                     GCNGYITKPIDFAGLEQMISKLLGRA"
BASE COUNT          461 a          465 c          485 g          503 t
ORIGIN      
        1 tacttccagg ccatccatat ctggaagttg caaatcacag attgccaggt gatgaccgcc
       61 ttgatcgaag agttcgattg ctgcggcacc ggttgcggcc gtatcgaccg aataaccttc
      121 ttcgatgaaa ttctgccgca aagaatccgc catcattggc tcgtcatcta cgaccagaat
      181 tctgacttct ttgttctcca cctttttctc ctctttagaa gttgccgcac tctgagggct
      241 cattattcac gctactcctt caacgaaacc aaaatcggag ctactcctgc gccaggggga
      301 cagtgaccaa aaacctactg tcttcgtact gcgcagaacc tccatgtgcc tcgacgattt
      361 ttgccgccaa cgacattcgg atttcatcgc tacccacgaa agatcgaaac ggatcgtgat
      421 caatgggagc cagtccaagc cattcaattg ttgcctcatc ggcggcgtgt tcagatcttc
      481 gaaccataac tgttattacg ccaggcgcgt cgccgttctg ttggtgtttt aatgctcccg
      541 tcgaaatcca gttaagcgcg tcggttagcc gggttggatc cagattgccg accaatggtt
      601 ccgactcagc ttcacagact accggcgagg cagagtcgtt tagctgcgaa caaattgagc
      661 gcactacttt ttgtaagtca aagcccggct gtttcttaag ttctattggc cgaccgtatt
      721 gaacgatggt cgataagtca ttcgccgccc ggtcaaggcc ggccatcaac ttcataatcg
      781 tttgctgttc gtcttctggg cgttcgctct tttcaattcg ccggcgcagg aacgtggcat
      841 aaagtttgag accattcagc tgattcttaa ggtcatgcac aatctgaatt gaggctttgc
      901 cgagttcctg gagcgtactt ccgtcggctg tcccagtcga taaaggcttc attggctgcg
      961 aatctcactt tgactatttg ggggccaccg tcgggttggg gatcccggag tctcgggcga
     1021 gtgtatgaat taggtgtttc ttgctcgcgc cgatgtgttg tgtttcggtg cgggatggta
     1081 gcaaaaaagc tcggcgtatt ctagtgatac agtaaaatca acaacttggc gggacaaaac
     1141 cctggagttg tgtgtaaatt tgcagtgcgg ttaaggccaa aaaatgaatt ccaagcaaac
     1201 agaattgagt ctccttctcg ttgaagatac agaagacaat cgcttcatga tgcgtcgtct
     1261 gcttgagatg gaaggctatc gggtagtgga agctaggaac ggtgaggagg ctgtgaaaat
     1321 tgctcaatca gagaaccctg atctgatctt gatggatttg agcttaccca tcatcgatgg
     1381 cttggcggct actcggctca ttcgccagct ccctcaattt aaagagacgc caatcattgc
     1441 ggtgtcagcc cacgacacgg cggatttcca agacgacgcc ctcgctgccg gctgcaacgg
     1501 ttacataact aagccgattg attttgctgg attagagcaa atgatttcga agttgctcgg
     1561 gagagcgtga agataggtgt ccgatatgct ttagcttgtc gtgattggaa taaagagtca
     1621 ctcactgatg atgacgacaa gctgaagagc cacttgcaaa agtcaggagt tgtgatcaga
     1681 ttaagagcgg agttcattag gctctcattc tccccaagct tcagcttggg gttacagcgc
     1741 gctctcagta ctctggaacc gttttaacgg tttacccaat gtgcgaatca ataagaatgc
     1801 taatgaaact tcggcgtgga gcttgattgg ctctaaaccg taaaccgtta aaacggttcg
     1861 tcaaaagtgt agccctaccg taaaccccaa gctgaagctt ggggagaatg agag
//
LOCUS       DATCGC010000664         1598 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_177141, whole genome shotgun sequence.
ACCESSION   DATCGC010000664 DATCGC010000000
VERSION     DATCGC010000664.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1598
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_177141"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..603)
                     /locus_tag="VIJ87_06375"
     CDS             complement(<1..603)
                     /locus_tag="VIJ87_06375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444087.1"
                     /translation="MPTNDKPEGDSKFRIALAKTVTTWALVAILAIAALIILVAGINA
                     IRVPEKEDQFFDIAKYVLGVLLPVIGAWVGTVLAFYFGQVNFEAASRSAANLVRQLSP
                     REKLQAKAADQAMMKINEVTTFKIPPEKTEGDITIRELIDEGFEKDKSHPRQRLPILD
                     GESRGKYVLHRSTIDAFVAPIKRPPDVDESTLSLKDLLEDP"
     gene            870..1385
                     /locus_tag="VIJ87_06380"
     CDS             870..1385
                     /locus_tag="VIJ87_06380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444088.1"
                     /translation="MKIPVFVSSPTSLSPAQEAARTVIIRQLDDNDLEARALGRSDYP
                     TELPLREVLLIARHCSGGIILGFEQFRANGGLKKRGTPAEEQVSTPIPFPTPWNHLES
                     GILFGLHLPTLVFREDGITGGIFDTGVSDVFIHPMPPANIKGAAKDALRQVFQRWAGR
                     VREHYYNDKRE"
BASE COUNT          357 a          411 c          408 g          422 t
ORIGIN      
        1 tgggtcctct agcaaatctt tgagtgacaa ggttgattcg tccacgtctg gaggacgctt
       61 tatgggagcc acaaatgcgt cgattgtgct tcggtgaagc acatatttgc ctctgctctc
      121 gccatccaga ataggaagac gttgtctagg gtgcgatttg tccttttcaa agccctcatc
      181 gatgagctct cttatcgtaa tgtccccctc ggtcttctct ggcggaatct tgaaagttgt
      241 gacctcattg atcttcatca tcgcttgatc ggcagcctta gcttgaagct tctcgcgcgg
      301 tgagagctga cgcacgaggt tggcagcgct tcttgaagcc gcctcaaagt ttacctgtcc
      361 gaaatagaaa gcgaggacgg tgcctaccca ggctccgatc accggcagaa gcacgccgag
      421 tacgtatttg gcgatgtcga agaattgatc ctccttttcg ggtacgcgaa tcgcgtttat
      481 gccggcaacc aaaataatga gagccgctat ggcgaggatc gccaccaggg cccaagtcgt
      541 gaccgtctta gccaacgcaa tcctaaactt gctgtccccc tcgggtttat cgttggtcgg
      601 cataacactc tatgctgcgc gcttgtgctt caccttattt cagtcggttt tcttcgcgat
      661 aatcaagcaa atttgaagac attgcccaag cttcttcgcc gtaacagcca ttattgattt
      721 agcttccgcg gggatcacat ctggtgattg cctctcagcg cactttaatt ttcgtcttgc
      781 acttccctgc tcttgtatga aacgctaatc gcgttaaggc gttgtaagaa gcccgcctca
      841 taccgactga aataccagaa gttctgacta tgaaaatccc tgttttcgtt tcgtctccca
      901 cgagcctctc tcctgcacaa gaagcagctc gaacggtgat tattcgacaa ctagacgaca
      961 acgacttgga ggcgcgtgct cttggccgct ctgattatcc cactgagcta cctttgcggg
     1021 aggtgctgct tatcgcgcgt cattgctcgg gtgggataat tctgggattc gagcaattcc
     1081 gcgcgaacgg tggattgaaa aagcgcggaa ctcctgcaga ggagcaggtc agcacaccga
     1141 ttccatttcc gactccttgg aatcatttgg agtcaggcat tcttttcggg ctccatctac
     1201 cgactctagt gttccgcgaa gacggcatca caggaggtat attcgatacc ggcgtttcag
     1261 atgttttcat tcatcctatg ccgccagcaa atatcaaagg cgctgcgaag gatgcgctga
     1321 ggcaggtatt tcagagatgg gcaggcaggg ttcgcgagca ttattataac gacaagcggg
     1381 agtgaatcag taccgcatgt atccagaatc cgagggttaa gcatgcaagc aaacgacgtc
     1441 gtcgtcagca gttgggccga gttgatgaat gctctatacg acattcccag aactgctttt
     1501 cagaggtacc ggtctgattt tgtttaccgt ggcttggccg accattcgtg ggggctggaa
     1561 accagtctcc aaagactctg tggagactat gtgaatgt
//
LOCUS       DATCGC010000665         1196 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_476600, whole genome shotgun sequence.
ACCESSION   DATCGC010000665 DATCGC010000000
VERSION     DATCGC010000665.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1196)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1196)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1196
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_476600"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            568..>1196
                     /locus_tag="VIJ87_06385"
     CDS             568..>1196
                     /locus_tag="VIJ87_06385"
                     /inference="COORDINATES: protein motif:HMM:NF012879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEY5444089.1"
                     /translation="MQRLVMKLLVLALTMTLGLSSLQAKPVNVPVVYYKLPNGLKVVI
                     SEDHIAPVVTVGVYYNVGFRVEPKGRTGFAHLFEHMMFQGSANVKKFEHAKYVEANGG
                     STNGHTDFDYTNYYETLPSNRLEMALWLEADRMRSLDISEENLKNQQNVVSEEVRVNV
                     LNQPYQLFEWIELWKNAFTNWNNSHNGYGELDEINAATIEDVRSFFKTY"
BASE COUNT          329 a          284 c          290 g          293 t
ORIGIN      
        1 gggttctgtt aattaaactg acgatggata ctcgggatca cctgcgggca aagcacaact
       61 agacttcgag gcggcttaac ctaaggtgtt tgaggatttc gtggggctgt cgggatttga
      121 ctgaggccaa atgacctcga aagcattatg gcaaactggg gcagcaggtg gcaaccaaaa
      181 gaaatttcga ccctgaaatg gccaataagc tttagtttgt cgctgactga cggaagaagt
      241 cagtcacaga tatccataga tcggacagat cagaagggat tccaatccgt agtattcgtg
      301 cagatctgtg gccgacttct ctgttagcgc agcgacaagt taaagcatat cggacaccgc
      361 atatcggaca cagcgaaact ttctgttagt tgctcgcgta gttagactca ccacgggtca
      421 agtagtacaa ctcgttccaa ttctgcgtag ctcattcttg tttttcggat caaaccgcca
      481 tcattaagga tcggtttggt cgacgactaa ttttttacaa ttcaactccc cagaaatgat
      541 ccatttgatt tcaaagtgag gaatctcatg cagcgacttg taatgaaact cctggtcctg
      601 gctctgacga tgactcttgg cttgtcgtca ctacaagcca aacccgttaa cgtcccggtc
      661 gtctattaca aacttcccaa cggcctcaag gtggtgatct ctgaagatca catcgcgcct
      721 gtcgtcaccg tcggggtcta ttacaacgtt ggctttcgag ttgaaccaaa aggtcgaacc
      781 ggcttcgcgc acctgttcga acacatgatg tttcagggtt cagcgaatgt gaaaaagttt
      841 gagcacgcga aatacgtcga agcgaacggc ggcagcacca acgggcacac agatttcgac
      901 tacacaaact actacgaaac tctgccgagc aatcgtcttg aaatggcgct ctggttagaa
      961 gctgaccgca tgcgttcact cgacattagc gaggagaatt tgaagaacca gcaaaacgtc
     1021 gtcagtgaag aggtacgcgt aaatgttctg aatcagcctt atcaactctt cgagtggatc
     1081 gaactctgga aaaacgcgtt cacgaattgg aacaactcgc ataacggcta cggtgaactc
     1141 gacgagatca atgccgcgac gatcgaagat gttcgtagtt tctttaagac ttacta
//
LOCUS       DATCGC010000666         1543 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_476613, whole genome shotgun sequence.
ACCESSION   DATCGC010000666 DATCGC010000000
VERSION     DATCGC010000666.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1543
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_476613"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1543
                     /locus_tag="VIJ87_06390"
     CDS             <1..>1543
                     /locus_tag="VIJ87_06390"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY5444090.1"
                     /translation="GDKLFDGSWGYDTGFRYSQVDNTQTGTQVSASRFNQILNQADPI
                     FQPGGALAGQPVFNPFGDYRNPIPSNSGTVEFARVHPKDEDTSKLATLDATIYTTDLF
                     HLPAGGVGLAIGGQWRREQLKENPDILNLEGDIVGNSPVPGAQGSRNSYAIYAETRIP
                     IFSPVTSTYSRGDGKNPKNPQIVSETHAAIPGFYSLEFTAGGRFEEFLNNDSNVLVPK
                     VGMRWQPFDEQLTLRATWGEGFREPSLEELFGSPVSTLEVTHDPLKGGLLESETNTLI
                     TSNPNLQPEDSRSFSGGFVYSPKYAPGLNVSVDFWDIERTGVVTAPLAQQVLDGTAPG
                     IVERDAGGFITRITLANENLGSQKARGFDFGLYYQRPTQWGTFTSQTQVTYLDEFLFP
                     QFIFAEFGPTAGNLAGRTTDPGLSNEGWYKWKGQSSLEWNWKGFDLVTIVRFIDGFNE
                     FTPNLHQHWVHQTWTFDGLLSYDFTALLPIEEQPVPGYAKSPKDFVRGKDGAPLEKAV
                     AQTSNY"
BASE COUNT          354 a          444 c          408 g          337 t
ORIGIN      
        1 gggagacaag ctgtttgacg ggagctgggg ttacgacacc gggttccgtt acagtcaggt
       61 tgacaatacc cagaccggca cgcaggtgtc cgcatcgcgt ttcaaccaga tcttgaacca
      121 ggccgatccg atctttcaac cgggtggagc tctcgctggc cagcctgtct tcaatccttt
      181 cggagattat cgcaatccaa tcccgtccaa ttcgggcacg gtcgagttcg ccagagtgca
      241 ccccaaagac gaggacacct caaagttggc cacgttagat gccaccatct acacaaccga
      301 cctctttcac ctgccggctg gcggcgttgg cttagccatc ggtggtcaat ggcggcggga
      361 gcaactgaag gagaatcccg acatactcaa tttggaggga gacattgtcg gcaactcgcc
      421 agttccaggt gctcagggca gccgaaattc ttatgcgatt tacgcagaga ccagaattcc
      481 tatcttcagc cccgtgacga gtacctactc cagaggcgac ggcaaaaatc caaaaaatcc
      541 gcaaatcgtg agcgagaccc atgctgcaat tcccggcttt tattccctgg agtttaccgc
      601 tggggggcga tttgaagagt ttctgaacaa cgatagcaat gtcttggtgc caaaggttgg
      661 catgcgctgg caaccgtttg acgagcagct gaccctgcgc gcgacttggg gcgaaggctt
      721 tcgtgaaccg tcacttgagg aactgtttgg gtccccggtc tcaaccttgg aggttactca
      781 cgatccgctc aaaggtgggc tgctcgaatc tgaaacgaac acccttataa ctagcaaccc
      841 gaatcttcaa cctgaagatt cgcgctcgtt cagcggcggc tttgtttact cgccaaaata
      901 cgcgcctggg ctgaatgtct cggttgactt ttgggacatc gagcgcaccg gagttgtgac
      961 cgctcctttg gctcaacaag tgctggatgg caccgctcca ggcattgtcg agcgcgatgc
     1021 tggcggattc atcacccgta tcacacttgc aaatgaaaac ctcggttcgc aaaaggctcg
     1081 cgggtttgac ttcggccttt actaccagag gccaacgcag tgggggactt tcacttcaca
     1141 gactcaagtc acctacctgg atgaattcct cttcccgcag ttcatcttcg cggagttcgg
     1201 accaacagca ggcaacctgg ccggcagaac cacggaccca ggtctctcga atgaaggttg
     1261 gtataaatgg aaaggccaat ccagcctcga gtggaattgg aaaggcttcg atctcgttac
     1321 catcgtgcgt ttcatcgacg gattcaacga atttacgcca aaccttcacc agcactgggt
     1381 tcaccagacc tggaccttcg acggcctgct ttcgtatgac ttcaccgccc tgcttccaat
     1441 cgaggaacag cctgtgcccg gctatgccaa gagcccgaaa gacttcgttc gcggcaagga
     1501 tggcgcgcct ctggaaaagg ccgtggctca gaccagcaac tac
//
LOCUS       DATCGC010000667         1087 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_142387, whole genome shotgun sequence.
ACCESSION   DATCGC010000667 DATCGC010000000
VERSION     DATCGC010000667.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1087
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_142387"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            103..492
                     /locus_tag="VIJ87_06395"
     CDS             103..492
                     /locus_tag="VIJ87_06395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444091.1"
                     /translation="MIKIARTVFDEKEISLQDGKDVTLRPLPIALLKKAMNAWNKIGD
                     AEEETAIFDVYVQCAGICISREFKDDFEKTIATDGTLTKDYREHLEDILDTPTIYEIL
                     EVCMGLKLNDPKLAEAVETALMEDGTT"
     gene            519..797
                     /locus_tag="VIJ87_06400"
     CDS             519..797
                     /locus_tag="VIJ87_06400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444092.1"
                     /translation="MLLGNWKDFSELENSLSLPELEAMLQANREREHRQHKFAAALKG
                     IDIDAEQADDVQFRREVIERRADAIIRGENPETAEWAAYGIAHEVEEE"
     gene            794..>1087
                     /locus_tag="VIJ87_06405"
     CDS             794..>1087
                     /locus_tag="VIJ87_06405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444093.1"
                     /translation="MRIEIVGTAKTAQAKAGLASLVAETEALNAALKQTTLLAAGATP
                     KSFAQATAGIAASNQVRKNALATTGRFDVQQMKIADSIERNTKLLRSQGLAWNQ"
BASE COUNT          325 a          243 c          286 g          233 t
ORIGIN      
        1 cgcatagagg gcgggcgtct tccgctagaa gaattggttg cctatgtcca aaagtttgcg
       61 gtatgagcaa acctatgata tggtaatcct accaacttag gagtgattaa aatagcacgt
      121 acagtttttg atgaaaagga aattagtcta caggacggca aggacgtaac actacgtccg
      181 ttgcctattg cactattgaa aaaggctatg aatgcctgga ataagattgg ggatgccgaa
      241 gaagaaacgg ctatcttcga cgtttatgtg cagtgcgctg gtatctgtat ttcacgcgag
      301 ttcaaggacg actttgaaaa gaccatcgcc accgacggta ccttgaccaa ggactaccgt
      361 gagcacctag aagatatcct cgatacgccg accatctacg aaattctgga agtttgcatg
      421 gggttgaagt tgaatgaccc aaaactggcg gaagcagtgg agacggcact gatggaggat
      481 gggacgacct agacctaggc gacctagagg ctgaactaat gttattggga aactggaaag
      541 acttttccga actagaaaac agcctgtctt tgcctgaact agaagccatg ttacaggcaa
      601 atcgagaacg tgaacatcgc cagcataagt ttgcagcggc cctcaagggt attgatattg
      661 atgctgaaca agccgatgac gttcaattta gacgagaagt tatcgaacgc agagcagacg
      721 caatcattag gggtgagaat ccagagacag ccgagtgggc agcatacggt attgctcatg
      781 aagtagaaga agaatgagaa ttgaaattgt cggtaccgcc aagaccgcac aggccaaggc
      841 gggcctagca tcacttgtag cagaaaccga agcgctgaat gcagcgctca agcaaaccac
      901 cctgcttgcg gctggtgcta ccccaaagtc ttttgctcag gcaaccgctg gtattgcagc
      961 ctctaaccaa gtccggaaaa atgcactagc aacgactgga cgtttcgacg ttcagcagat
     1021 gaagattgca gactctatcg aacgtaacac caagttactt cgcagccagg gcctcgcatg
     1081 gaatcag
//
LOCUS       DATCGC010000668         1498 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_442854, whole genome shotgun sequence.
ACCESSION   DATCGC010000668 DATCGC010000000
VERSION     DATCGC010000668.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1498)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1498)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1498
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_442854"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..203
                     /locus_tag="VIJ87_06410"
     CDS             <1..203
                     /locus_tag="VIJ87_06410"
                     /inference="COORDINATES: protein motif:HMM:NF013811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444094.1"
                     /translation="TVILTSDHGNIEDLSSRNHTLHAVPTIVWGAQRERIAARVQTLA
                     DITPAIVALLTEKQSTNELSTN"
     gene            184..>1498
                     /locus_tag="VIJ87_06415"
     CDS             184..>1498
                     /locus_tag="VIJ87_06415"
                     /inference="COORDINATES: protein motif:HMM:NF023128.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY5444095.1"
                     /translation="MNSAQTEVPNTDSHSRSDKNNPREIFGWKMYDWANSAFYTTVVG
                     ALFSPYLTRLAQTAVGENGVVLDLGFLGAVTAKSLPSLCVSVSVGCQVFLLPVLGALG
                     DYSDLKKRLMALFCYVAVIANCLLFFIQGGLYIWGGLLFIVANVCFGASIVFYNAFLP
                     EIATEDQADKVSSRGFAYGYLGGAILLSLNLLLVTKAPDLGISTGLAVRLSLLSAGLW
                     WGCFAVITFLFLKSRPKVKVLPPGKGYISAGFSEIFATVKELRRLPLTLRYLLAYLVY
                     NDGIQTVIFAASAFLEQELFPQGNPIFLLKIFLMVQFVAVVGALLFERLAYLIKTKNA
                     ILVSLVIWAGIVIYAYKFLHTVPEAWVLAGLIAVVLGGSQALSRSLFSRMIPEGKEAA
                     FFGLYEVSERGTSWMGPLLFSIVIARTGSYRQALLSLIGFFVVGLV"
BASE COUNT          306 a          374 c          386 g          432 t
ORIGIN      
        1 ctacagttat actcacgagc gatcacggga atatcgaaga tttgtcgtca cgcaatcaca
       61 cgctgcatgc agtaccaact attgtatggg gtgctcaacg tgagcgaatc gcagctcgag
      121 tccaaacact tgccgacatt acgcctgcca ttgtcgcgtt gttaacggaa aagcaaagca
      181 caaatgaact cagcacaaac tgaggttccc aacacagact cacattccag atccgacaaa
      241 aacaacccgc gtgaaatctt cggttggaag atgtacgact gggccaactc ggctttctat
      301 acgacagttg ttggtgcgct cttcagtcct tacctgaccc gactcgctca gaccgcggtc
      361 ggtgaaaacg gtgtcgttct cgatctcggt tttctcggcg ccgtcacggc aaaatcgcta
      421 ccgagtttgt gcgtgtccgt ctcggttggc tgccaggtct ttttactacc agtgttggga
      481 gcgctcggcg attattcaga tctcaagaaa cgtctgatgg cgttgttctg ctatgtcgcg
      541 gtgatcgcaa actgtctgct cttcttcatt caaggtgggc tctatatttg gggcggtctg
      601 ttgttcattg tcgcaaacgt ctgttttggg gcttcgatag ttttctataa cgcttttttg
      661 ccggagattg cgactgagga ccaggctgac aaagtttcca gccgcggctt tgcctacggt
      721 tatcttggcg gcgcaatact actgtcgctt aatctgctgc tagtcaccaa agctcctgac
      781 ctgggtattt cgactggact cgctgtgcgg ttatcgcttt tgtcagcggg attatggtgg
      841 ggatgctttg cggtcatcac gttcctcttt ttgaaatcac gcccgaaagt aaaagtttta
      901 ccgccaggca aaggctatat atctgccggc ttcagtgaga tatttgccac cgttaaggaa
      961 ctacggagac tacccttgac gctgcgttat cttctggctt acctcgtcta taacgacggt
     1021 attcaaactg tcatcttcgc cgccagtgca tttctcgagc aggaactttt ccctcaaggt
     1081 aacccgatct tccttttgaa gatttttctg atggtgcagt ttgttgcagt cgtcggggca
     1141 ctcctctttg aacgccttgc ttacttaatc aaaacaaaaa acgcgattct cgtgtcgctg
     1201 gtaatttggg ccgggatcgt tatctatgct tacaagtttc tgcacactgt tcccgaggcg
     1261 tgggtactcg ccggcctaat agcggtcgtg ttgggaggct cgcaggcgtt gtcacgttcg
     1321 ttattctcgc gaatgattcc agagggtaag gaagcggcgt tctttggtct gtatgaagtg
     1381 tcagaacgtg ggacgtcgtg gatgggtccg ctgttattca gcatcgtcat cgcgcgtacc
     1441 ggttcctatc gtcaagcgtt gctgtcgctg attgggttct ttgtcgtagg actcgtga
//
LOCUS       DATCGC010000669         1489 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_275403, whole genome shotgun sequence.
ACCESSION   DATCGC010000669 DATCGC010000000
VERSION     DATCGC010000669.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1489)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1489)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1489
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275403"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..147)
                     /locus_tag="VIJ87_06420"
     CDS             complement(<1..147)
                     /locus_tag="VIJ87_06420"
                     /inference="COORDINATES: protein motif:HMM:NF018435.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HEY5444096.1"
                     /translation="MAFKSIFSLFSSDLAIDLGTANTLVYAKGRGIVVSEPSIVAINK
                     VTNQV"
     gene            complement(485..>1489)
                     /locus_tag="VIJ87_06425"
     CDS             complement(485..>1489)
                     /locus_tag="VIJ87_06425"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor domain-containing diguanylate cyclase"
                     /protein_id="HEY5444097.1"
                     /translation="LHFIGDQSGAAHNALAGLQQLINADRWAIYLFSEAKGFEGANLE
                     AIAVRRPNQPGGVRSEEHWRRMLTGEADLPLGSETRAATRAAAGMGIIKRKENGVFVV
                     AIPLICGERILGVIEGIRDGKDARAFKKSDVELLDSLSLPIASALANAVRIAEAERLS
                     QTDDLTKLHNARYLRQFLLNEIRRARRYGTSVAALFLDLDDFKRINDEHGHLVGSHVL
                     MEMATVILSSVRDTDAVARYGGDEFVIVLPDTGTELAGAVAERIRQKIGRHHFTGGRR
                     LQLALTASFGVAAFPQHASSPQQLVACADTAMYEAKAASKNCVRFANSLTSPSAVASS
                     "
BASE COUNT          369 a          391 c          367 g          362 t
ORIGIN      
        1 gacctgattg gtcaccttat taatagctac aattgaaggc tccgagacaa caattcctcg
       61 gcccttcgca tagaccagcg tgtttgccgt tcctaaatca atggcgaggt cgctggaaaa
      121 cagactgaaa atagatttaa aagccatcta gactgattca cttcccgtgg ttgtagaatg
      181 gaacttcggg tgggatcggc ggtaactatc agtaactagc gaaaccacga caccccttga
      241 atacttatta atcgccggtc caaaacactc tggcggtggt tctgatccgg ccttgtccgg
      301 ctgctcttta ctccccaaga cgcaccaaac acgtccgaac agtttaagat acactgtgtt
      361 gcgcgaagcg taaacccgaa actgaaactc aatcgtcgca aaaccgagat atgaaagaac
      421 gttagatgaa tgatcgttag ttagtgattg acctttagcg ttttacaact ccgttagata
      481 aggttcagct ggaagcaacc gcactggggg aagtaagact attggcaaat cgaacgcagt
      541 tcttgctggc agcctttgct tcgtacatcg ccgtgtcggc acaagcgaca agttgttgtg
      601 gtgaagacgc atgttgagga aacgccgcca ctccgaagct ggcggttaat gctaactgta
      661 gtcggcgtcc accagtgaaa tgatgtctac caatcttttg tcgaatgcgt tccgcgacag
      721 cgcccgctaa ctcggtccct gtatcgggaa gcacaatcac aaactcatcg cctccgtaac
      781 gcgctactgc gtctgtgtcg cgcacggacg aaaggattac cgttgccatt tccatcagga
      841 cgtgcgagcc gacgaggtgt ccgtgttcgt cgttgattcg tttgaaatcg tcgagatcaa
      901 gaaacaacgc cgctacgcta gttccatatc ggcgcgctcg acgaatttca ttaagcagaa
      961 actgacggag gtagcgcgca ttgtgaagct tggttagatc atcagtttgg gagagtcgtt
     1021 cagcttcggc gatacgaacc gcgtttgcta atgcggaagc gattggaagc gacaacgagt
     1081 cgagcaattc aacgtctgac tttttgaacg cacgcgcgtc cttaccgtcg cgtatacctt
     1141 cgatcacacc aaggattcgt tctccacaga tcaacggaat tgcgacaacg aagacaccgt
     1201 tttccttgcg cttaataatt cccattccgg cggcagctcg cgtcgcagct ctcgtctctg
     1261 atcccaaagg tagatctgcc tcacccgtta acattcgccg ccaatgctct tcggaacgaa
     1321 cgccgcctgg ttgattcggt ctgcgaaccg cgatggcttc caggttcgcg ccttcgaacc
     1381 ctttagcttc cgaaaaaaga taaatggccc aacggtctgc gttgatgagt tgttgcaatc
     1441 cagctaatgc gttgtgtgct gcaccgcttt gatctccaat gaagtgcag
//
LOCUS       DATCGC010000670         1813 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_311720, whole genome shotgun sequence.
ACCESSION   DATCGC010000670 DATCGC010000000
VERSION     DATCGC010000670.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1813)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1813)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1813
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_311720"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1353
                     /locus_tag="VIJ87_06430"
     CDS             <1..1353
                     /locus_tag="VIJ87_06430"
                     /inference="COORDINATES: protein motif:HMM:NF015140.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007154 - cell communication [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Calx-beta domain-containing protein"
                     /protein_id="HEY5444098.1"
                     /translation="SVPNGSGTPTGMVTFYDGTTPIGQVSLNASGQATLTTNLGMAVH
                     EIFALYASDTKFAASSAQIEQIVGPTLQFSSATFSAGENAGHVDVQVTLAGSSSTPVT
                     VDYITRDFGDQDCSVNNGFASLKCDYQTTSGQLIFNPGEGSKTISISLVDDAYAEGNE
                     TFNVVLSNPSGASLNLPSTAIVIITDNDPVNGTNPIDQAGFFVRQHYLDFLNREPDTD
                     GFNFWTDQINSCGSDAQCIEIKRINVSAAFFLSIEFQETGYLVYRIHKAAFGTQGQPV
                     PIMFGRFLIDTQQVQKDVRVGIGNWQAQLEANKQAYALAFVQQNVFLNSYPSNLSANQ
                     VVAIMDTNAGGVLSQTEFDNLVAILGATPNDVTKRAQVLRAIAEDEDLKSRDFNRAFV
                     LMQYFGYLRRNPNDLPDGDFSGFNFWLGKLNQFNGNFINADMVKSFLISGEYRHRFGP
                     "
BASE COUNT          450 a          450 c          447 g          466 t
ORIGIN      
        1 tcagtaccaa atggctccgg cactccgact ggcatggtca ccttctacga tggaaccacg
       61 ccgatcggcc aggtctcact aaacgcaagc ggtcaagcta ctttaacaac gaatcttgga
      121 atggctgttc acgagatttt cgccctttac gcttcagaca caaagttcgc tgcaagttct
      181 gctcagattg aacagatcgt gggaccgact cttcaattca gcagcgcgac attcagtgcg
      241 ggtgaaaatg caggacatgt tgatgttcaa gttacgctgg ctggttccag ttccacgccc
      301 gtcacggtcg actacataac tagagacttc ggggaccagg actgcagtgt caacaacgga
      361 ttcgcgtcgt tgaagtgcga ctatcaaact accagcggac agctgatctt taatcccggc
      421 gagggatcca agaccatatc aatttcgctt gttgatgatg catacgcgga gggaaatgag
      481 acttttaacg ttgtactcag caacccctct ggcgcgagtc tgaatttacc ttcaacggca
      541 atcgtaataa tcacggataa cgatccggtc aacggcacca acccaataga tcaagcaggc
      601 ttctttgttc gtcaacatta cctcgatttt cttaatcgcg aacctgacac cgatgggttt
      661 aacttctgga cagatcaaat aaactcctgt ggaagcgacg cgcaatgcat cgagataaaa
      721 cgaatcaacg tctcagccgc gtttttcctc tcgattgagt ttcaggaaac gggttatctc
      781 gtctatagaa tccacaaggc tgctttcggt actcaaggtc agccggtgcc gattatgttt
      841 ggtaggttcc tgatcgatac tcagcaggtc caaaaggatg tgcgagttgg aatagggaac
      901 tggcaggcgc aacttgaagc gaacaagcaa gcgtatgcac tggcgttcgt gcaacagaac
      961 gtgtttctaa attcataccc aagcaacctc agcgccaatc aagtagtcgc tatcatggat
     1021 acgaacgccg ggggagtgtt gtcgcaaacg gagtttgata atttggtggc aattcttgga
     1081 gccacgccta atgatgtaac caagcgtgct caagtgctcc gggcaatagc tgaagatgag
     1141 gacctaaaga gtcgagactt caatcgggcc tttgtgttga tgcagtattt tggttacctc
     1201 cgtcgaaatc caaacgactt acctgatggg gacttcagcg gattcaactt ctggcttggt
     1261 aagctaaacc aattcaacgg caacttcata aacgccgata tggtgaaatc atttctgata
     1321 tcaggcgagt atcgacaccg atttggcccc tgatgtccaa taagctttag cttgtcgtgt
     1381 cggaagagtt cagccgcaga tctacgcaga ggtacgcaga tcaagaaaac gttagaagaa
     1441 gtttggtttt agttgctttg ggatggtttt tagttgattt ggatggttat gcggctttgc
     1501 cgcttcccgt gcggaaagcc tctggctttc cgtcaaggct gcgatctttt gcggctacgc
     1561 cgccgattcc tttctaagtg gcaaacggaa agccagaggc tttccgcacg ggaggcggca
     1621 aagccgccca ccgctgaagt ccaatccccg atcttcttca ccgacggcta ttcaccgctc
     1681 atcaacgctc acttctttca ataacgtgtt cttgggatca aagtcgatct ttgttggcct
     1741 gtccttcacc tgcacagttt tcacgtaact ttttccggtc ggtgttatca gggtgttggt
     1801 tgttcccgac gac
//
LOCUS       DATCGC010000671         2072 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_408318, whole genome shotgun sequence.
ACCESSION   DATCGC010000671 DATCGC010000000
VERSION     DATCGC010000671.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2072)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2072)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2072
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_408318"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..588
                     /locus_tag="VIJ87_06435"
     CDS             <1..588
                     /locus_tag="VIJ87_06435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444099.1"
                     /translation="EGLRVLNENNWFPAMTLIVGNPDEDDEDAMATLDLIYEMERRGL
                     FAFLIPSIFTPLHDTRMEMEKGVTQTRDLTPLQWQLMMKCWKMNLRPGQYSWWGPMAW
                     RVGSIGMWLYKLRGLNGPNFTWPLLMFSGAISEKNLQRMGKIYQGKPLKVKTRKELLA
                     SLKPKDWQFLRADNGDMPVDYVPAVRAHAMAGDMA"
     gene            659..1180
                     /locus_tag="VIJ87_06440"
     CDS             659..1180
                     /locus_tag="VIJ87_06440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444100.1"
                     /translation="MNRYVVRALVAVLTFCIGVAVSFGPRRSRQKQYDRCHSRKVFRL
                     DAQPRHHGPSFSGPFLSIDTAQDDPLKLTYSATITDPTFTHRQHVEFVADNIYGQPIN
                     NYTVSYQPAWGQYRGPVLNVYVKSKNAPGNLETVSLECDGNETLIVWISEVDFKNGTH
                     WENPRHKSGQSNL"
     gene            1188..1586
                     /locus_tag="VIJ87_06445"
     CDS             1188..1586
                     /locus_tag="VIJ87_06445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444101.1"
                     /translation="MIRRSARFAYALVFLATLTSIGHGQTSRSWLHGSWEGTGYQIDA
                     NETWTMNLRVQGNKFVIEYPSLKCHGFWRLLDMDSRNARFRERITFGVSGCANNGNVT
                     IERLNRRQIAFRYSYSDTREISASAILNKK"
     gene            1606..>2072
                     /locus_tag="VIJ87_06450"
     CDS             1606..>2072
                     /locus_tag="VIJ87_06450"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY5444102.1"
                     /translation="MELPLTPLEFARRTRKLYPEREAVIDGDLRFTYEQFFSRCDRWS
                     NALLSLGVKQGDRVAYIAPNTHAMLESFYAIPQIGAICVPINYRLTPKDFVYLINHSG
                     ARVVCVHSEYLDAVESIRSELSGVTAFVALEDVRDGWLDYETLLHDAGSDFIPA"
BASE COUNT          509 a          519 c          522 g          522 t
ORIGIN      
        1 gaaggtttgc gtgttctgaa tgaaaacaac tggtttccgg ctatgacgct gatcgttggc
       61 aaccccgacg aagacgacga ggacgcgatg gcgacgcttg atctcatcta cgagatggag
      121 cgacgcgggc ttttcgcgtt cctcatcccg tcgatcttca cgccgctcca cgacacgcgt
      181 atggagatgg aaaaaggcgt cacgcagact cgcgacctta cgccgctgca atggcagttg
      241 atgatgaagt gctggaagat gaatctacgt ccgggtcaat acagttggtg gggaccgatg
      301 gcttggcgcg tcggctcaat cggcatgtgg ctttacaaac tacgcggatt gaatggtccg
      361 aatttcacct ggccgttgtt gatgttctcc ggcgctatct ctgaaaagaa cttacagcga
      421 atgggtaaga tctatcaggg gaaaccttta aaagtaaaaa cacgtaaaga attgctagca
      481 tcactaaaac caaaagactg gcagttccta cgtgctgata atggcgacat gccggtcgat
      541 tacgtacctg cagttcgggc tcatgcgatg gctggcgata tggcctgagt caaaaacccg
      601 agtgcttgta gcttgccaac ctgagattct gtagtttggt agtaagggaa ggtgagatat
      661 gaatcgttat gttgttcgcg ctctggtagc tgtgctgact ttttgtattg gcgttgccgt
      721 tagttttggg cctcgtcgtt cgagacaaaa acaatacgac cgctgccact caaggaaagt
      781 cttcagactg gacgcccagc ctcgccatca cggtccttcg ttttccggac catttttgtc
      841 gatcgatact gcgcaggatg atcctctgaa actgacttac tctgctacga tcacagatcc
      901 gactttcact catcgtcaac acgttgagtt tgtcgcagac aacatctacg gacaaccaat
      961 caacaactat acggtgagtt accaaccggc ctgggggcag taccgcggcc ctgtcttaaa
     1021 cgtttacgta aaaagtaaaa acgcgccagg aaaccttgaa acagtttcgc ttgagtgcga
     1081 cggcaatgaa accctgattg tatggatttc agaggtcgac tttaagaacg gcactcattg
     1141 ggaaaaccct cgacacaaga gtgggcaatc gaatctttag atcatcattg atacggcgaa
     1201 gtgctcgttt tgcgtatgcg cttgtttttc tcgctaccct cacttcaatc ggccatggtc
     1261 aaaccagtcg aagttggctg cacggatcgt gggaaggaac tggttatcaa atagacgcca
     1321 acgagacgtg gacgatgaac ttgcgcgttc agggaaacaa gtttgttatc gagtatccct
     1381 cactgaaatg tcatggcttt tggcgtttgc tggatatgga ttcgcgtaac gcgcggttta
     1441 gagagcgaat tacctttggt gtttccgggt gcgcaaacaa tggaaacgta accatcgaac
     1501 gtctcaatcg cagacaaatt gcctttcgtt attcctactc cgacacccgg gaaatttctg
     1561 cttcggcaat actcaacaag aagtaattgt cggaacattt ccaacatgga gctcccgtta
     1621 actccactcg aattcgcgcg tcgtacacgt aagctgtatc cggaacgcga agccgtcatt
     1681 gatggtgatt tgcgtttcac ctacgaacag ttcttttcgc gctgtgatcg ttggtctaac
     1741 gccttgctgt cgctcggtgt aaagcaaggc gatcgcgtcg cgtacattgc acccaatact
     1801 cacgcaatgt tggaatcgtt ttacgcaatc ccgcaaatcg gcgcgatctg tgttccaata
     1861 aactaccgcc taacaccaaa agactttgtt tacctcatca accacagcgg tgcgcgagtt
     1921 gtttgcgtcc actccgaata cctcgatgcc gttgaaagca ttcgttcgga actttcgggc
     1981 gtcaccgcat tcgtagccct ggaagacgtg agagacggct ggcttgatta cgaaaccctg
     2041 ctccatgacg ctggctcaga cttcataccc gc
//
LOCUS       DATCGC010000672         1305 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_78581, whole genome shotgun sequence.
ACCESSION   DATCGC010000672 DATCGC010000000
VERSION     DATCGC010000672.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1305)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1305)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1305
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78581"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..391
                     /locus_tag="VIJ87_06455"
     CDS             <1..391
                     /locus_tag="VIJ87_06455"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEY5444103.1"
                     /translation="GEAQLYATLDSAADEELQTIIQANLGVDKDIDGASDLPVPLLRQ
                     LITIKLREGNVINEHYKFVDGTSFASPIVASIIACMLEANPKLTPQQVKRILIETAER
                     VMGVEVDRQGWGVVTPRRAVEMAVRRR"
     gene            631..873
                     /locus_tag="VIJ87_06460"
     CDS             631..873
                     /locus_tag="VIJ87_06460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444104.1"
                     /translation="MSENEAAINTGAAEATAPEASTEEITYHAVEKDGVVTAIWEMQG
                     RKHLRTIDPRSRQGQDILRLYTTEHHDEVAGEAVAS"
     gene            complement(931..>1305)
                     /locus_tag="VIJ87_06465"
     CDS             complement(931..>1305)
                     /locus_tag="VIJ87_06465"
                     /inference="COORDINATES: protein motif:HMM:NF014841.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY5444105.1"
                     /translation="VLRRSDVISLHCPLIDETRNLIGATELQLMKSDAILINTARGGL
                     LDDQALIDALRNEEIGGAGIDVLRVEPPREGNPLLDVNQPNLIITPHNAWASRQAMQT
                     LADQLIENLEAFVRGEPRNLVV"
BASE COUNT          355 a          334 c          320 g          296 t
ORIGIN      
        1 aggcgaagcc caactctacg cgacgctcga ttcggcggca gatgaggaac tccagaccat
       61 cattcaagcc aatcttggag tagacaaaga catcgacgga gcaagtgatc ttcctgtacc
      121 gctgttgagg caattgataa cgattaagct tcgggaagga aacgtgatca acgaacacta
      181 caaattcgtt gatgggacat ctttcgcctc accgatcgtc gcttcaatca tcgcttgcat
      241 gttggaggcg aatccaaagc tcactccaca acaagtgaaa cggattctta ttgagactgc
      301 agaacgagtg atgggtgttg aagtagatcg acaaggatgg ggagtcgtca cgccgcggag
      361 agctgttgaa atggcggttc gacgacggtg agcgagaaaa agattattgg tcatcggtca
      421 ttttccattt cacattttcc atgtctgaca acgtctcggc gcgcattact cgatcaagac
      481 ttcgtggctt ccaaatggaa actgagaaat ggaaaatcac caatgaccaa taattctttc
      541 tccacttgca acagactatc ccctatgcaa caatcccagc acaaaaaaca ccgacaaacc
      601 gaaagttgag aggagagttt ttgagttcgt atgtctgaga atgaagcagc aataaacaca
      661 ggtgcagcgg aagcgactgc gccagaagca agcactgaag agatcactta tcacgcagtt
      721 gagaaagacg gcgtggttac cgctatctgg gaaatgcaag gacgcaaaca cctgcgcact
      781 atcgatcctc gctcacgcca gggacaagat attcttcgcc tttacaccac tgaacatcac
      841 gacgaagtcg ccggcgaagc agtagcctca tagcgcgaga aagtggactt tggtctttgg
      901 cctgatccga aaacgatcgg cgccgaatcc ctacacaacc agattgcgtg gttcgccacg
      961 cacaaacgcc tccagatttt cgatgagctg gtcggcaagc gtctgcatgg cttgtcgact
     1021 cgcccaggca ttgtgaggcg taatgatcaa gttgggttga ttcacatcca acagcgggtt
     1081 accttcgcgc ggtggttcca ctcgcaacac gtctattcct gctccaccaa tctcttcgtt
     1141 tcttaaagcg tcgattaacg cctggtcatc gagcaatccc cctcgcgccg tgttgattag
     1201 gatcgcatcg gacttcatta gctggagttc tgtggcgcca atcaagttcc tggtttcatc
     1261 gatcaatgga cagtgaagtg agatcacatc acttcttcga agcac
//
LOCUS       DATCGC010000673         1761 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_275514, whole genome shotgun sequence.
ACCESSION   DATCGC010000673 DATCGC010000000
VERSION     DATCGC010000673.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1761
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275514"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            98..352
                     /locus_tag="VIJ87_06470"
     CDS             98..352
                     /locus_tag="VIJ87_06470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444106.1"
                     /translation="MKDHLWFDAIGWVGAAALLVAYAMVSARKWEGHSSVFQFLNVSG
                     SLLLAANTIFYGSYPSTFVNLVWAAIAVFTIATRKRVSSR"
     gene            377..877
                     /locus_tag="VIJ87_06475"
     CDS             377..877
                     /locus_tag="VIJ87_06475"
                     /inference="COORDINATES: protein motif:HMM:NF012417.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEY5444107.1"
                     /translation="MRKINLKEVPEQEKKSPKGKFGRITKNISVALGREPESLDLSKR
                     HPFDLALVRIPQGKSLCPYHAHAAESELYLVVSGRGNVRDNNGITEVGPGDAFLFQPG
                     EAHQLSNTGSEDFVYYVIADNPRSGGATGDSCYYPDSGKWAVTKEGSEELMVKGTETD
                     YFDGEE"
     gene            943..1431
                     /locus_tag="VIJ87_06480"
     CDS             943..1431
                     /locus_tag="VIJ87_06480"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEY5444108.1"
                     /translation="MKKVNLNEIKEDPWQSPGGKYVVTFKGISEALGREPASLDLSKR
                     HPFDLEWSRVPAGKCNFPYHAHSAQWELYLVISGKGTVRHKDGKTEVVAGDAFIFGPN
                     EPHQLINSGDEDLTYYVIADNPIGEAGYYPDSGKWKVNKSSAADRVVIKGEETDYFDG
                     EE"
     gene            1497..>1761
                     /locus_tag="VIJ87_06485"
     CDS             1497..>1761
                     /locus_tag="VIJ87_06485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444109.1"
                     /translation="MIKKPSVEEFPYKTYLNILHGPLEVIDVQKLANACTDKWYNQTL
                     CKVNDSVVRMAVVQGEYHWHEHKDIDEFFFVLDGQFLIDLEDRV"
BASE COUNT          461 a          426 c          467 g          407 t
ORIGIN      
        1 agaatctctg attgattaac atcgcgccca ccagacatgg aaccgagatg tttcgcttcg
       61 ctcaacatga cagcacgatt attgagaagt ttaccgtatg aaggatcact tatggtttga
      121 tgcgatcgga tgggttgggg cggcagctct gcttgtggcg tatgcgatgg tctctgccag
      181 aaaatgggaa ggacactctt ccgtgtttca gttcctgaac gtcagtggca gcctcctcct
      241 ggccgcaaac acaattttct acggatcgta tccctccacc tttgtgaacc tcgtttgggc
      301 agccattgcc gttttcacaa tcgccaccag aaaacgagtc tcgtcgcgtt agttcagctg
      361 aggagttttt ttccacatgc gaaagatcaa tctcaaagag gttcccgagc aggaaaaaaa
      421 atcgccgaaa ggaaagtttg gccgcatcac gaagaatatt tcggttgcgc ttgggcgcga
      481 accggagtcg ctcgatttgt cgaagcgtca tccgtttgat ctggctttag tgcggatacc
      541 gcaaggcaaa tctctttgcc cctatcatgc gcatgcggcg gagtccgagc tttacctcgt
      601 cgtctccggt cgcggcaatg tgcgcgataa taacggaata actgaagtgg gacctggcga
      661 cgcctttttg tttcagcccg gtgaggcaca tcagctttcc aatactggca gtgaggattt
      721 tgtttactac gtgatcgccg acaatccacg cagcggcgga gcaacaggtg attcctgtta
      781 ttatccggac agcggcaagt gggctgtgac caaagaagga tccgaagagc tcatggtgaa
      841 aggaaccgag accgattatt tcgatggcga agaatgattt ggtaggggca gttcaccgca
      901 ccgctctccg gcgctcgagg tgaatcgccc ctagctcgcg caatgaagaa ggttaaccta
      961 aacgaaatca aagaagatcc atggcaatcg ccaggcggaa aatacgtcgt cacctttaaa
     1021 ggaatttctg aagcattggg gcgcgaaccg gcttcgctgg atctttccaa acggcacccg
     1081 tttgatttgg aatggagccg agtgccggca ggaaagtgca acttccctta ccatgcgcac
     1141 tccgcccaat gggagctgta tttggtaatc tccggaaaag gcactgttcg ccacaaggat
     1201 ggcaaaaccg aagtggtagc cggcgacgcc ttcatcttcg gcccaaacga gccgcatcaa
     1261 ctgatcaact ccggtgacga agatctgacg tactacgtca tcgccgataa cccgatcggc
     1321 gaagcaggct attatcccga cagtggtaaa tggaaggtca acaagtcatc agcggccgat
     1381 cgcgtagtga tcaaaggtga agagactgat tatttcgatg gtgaagaatg aatcaggaaa
     1441 gcaggaacac aggaagttga aattggagag gaagactcct cgttaacttc aaccttatga
     1501 ttaagaaacc atccgtcgaa gaatttccgt acaagactta cctgaacatt ctgcatggac
     1561 cgcttgaggt gatcgatgtg cagaaactgg ccaacgcttg cacagacaaa tggtacaacc
     1621 agacgctgtg caaagtgaac gattcagtcg ttaggatggc ggttgttcag ggcgaatatc
     1681 actggcacga gcacaaagat atcgatgaat tctttttcgt gctcgacgga cagttcttaa
     1741 tcgatctcga agatcgtgta a
//
LOCUS       DATCGC010000674         1907 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_78605, whole genome shotgun sequence.
ACCESSION   DATCGC010000674 DATCGC010000000
VERSION     DATCGC010000674.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1907)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1907)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1907
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78605"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            598..1635
                     /locus_tag="VIJ87_06490"
                     /pseudo
     CDS             598..1635
                     /locus_tag="VIJ87_06490"
                     /inference="COORDINATES: protein motif:HMM:NF033594.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ISNCY family transposase"
BASE COUNT          522 a          471 c          515 g          399 t
ORIGIN      
        1 tccacgcgaa ataagaattt tttgggctac atctgcagga gtgtaattga tgggtgagct
       61 atactgattc ggaattgcct ccgagattag agacgccgat aaagggtacc cgcagttcgc
      121 acagaacctg ctgcctgcta aaacagttgt ttcgcaccgc gtgcagatcg catcaggagg
      181 gggtaaactc gctaacacat cggaatccac aggattttcg gtatggcaac ctatcacttt
      241 tcaaagcaat ttatcccagg tggcgctctc taaaaaactg aagcaattaa tatattaaag
      301 atacagaatg tgtcaatcga cattcttttt cggtgtagta gcaaagtaat tataacaggg
      361 gctaacggca acgtgattat gtcagggtgg caggatgaca accctgacaa tgaaagaaga
      421 gaagcgatta gacgtaatcc agcgagtgca tcgcggtgat ctgacggttg ggcgggcagc
      481 gctggtgctc ggcgtcagcg aacggcagtg ttaccggatt aaagcacggg tcggtaaaat
      541 cggagctaag ggaatcgttc acggcaaccg cggacgggcc tgtaacacaa gactgaggag
      601 gagacggtta agcagatcgt ggaattagcc cgagggaaat accaaggctt caacgatcac
      661 catctgaccg agaagctcga agagcaagaa cagatcgaac tcagtcgtga aaaggtccgc
      721 cgtattcttc gtgcccatgg gatcgcgtca cccaagaagc ggcgcgggat caaacatcga
      781 agccgacgag aaagacgagc cgctgaaggc atgatgcttc aggtcgatgg ctcaccgcac
      841 gactggctgc aaggccgggg accgcgtctg tgtctgatcg gcgccatcga cgatgccacc
      901 agcaaggtgg tgggagcttt gtttgctcag gccgagagtt cgtggggtta ctttcagctg
      961 ttctgcgaga tcttcaagga gcatggactg ccgcagtcga tctataccga ctgtcattcg
     1021 gtcttttgga cggatcggga gccgacgtta gcggagcagt tgattaacaa gaagcccacc
     1081 accgaagtcg gccgaggttt acaacaactc ggggtgactt tgatcctagc ccattcccct
     1141 caggccaagg gcagaatcga aagactgtgg aacactttcc aagaccggct agtcagtgag
     1201 ttgagactgg ccaaggctaa caccgtgcaa caggctcaag cggtcctgga gcgttatctt
     1261 cccatgcata atcgtaagtt ctccaaaccc gctaaagcac agccggcctg gagaaaagtc
     1321 agtgctgtgc agattgaacg ggctttgtgt ttcaaacaac agcgtacggt agctaaggac
     1381 aacacggtga ctttcgaagg gacggtcttg cagatcccta agacatcacc ctttcgctct
     1441 tacgccaaca gaagagtcaa tgtccatgtg cttctcgatg gcgcggtgga gtttttctac
     1501 aaaacagaga aaatcgcttc cttcgactcc aaaacaaccc acgcacttgg cttgtatcca
     1561 acccatggca agaaggaggg cttccgctat ggtccggttt ctaaactcga tgctcaaccg
     1621 gtaatgtcac cctgacataa tcaccttgct gttaacctga cagattgacg ttgctacgac
     1681 agggccttca tcgcgaaagc gcttgacaag caggaaacga cttcgctaaa aactggtcag
     1741 accaccagac agctggaccc aatatgctac gggcgataaa aaaaactagg attcacgaag
     1801 aggtattcag ccaaatccga gagctgatca aagacggcag gttcaaagcc cgtgatcaac
     1861 tgccgtccga gcgcgaattg gccgagactt ttaaagtcag ccggacg
//
LOCUS       DATCGC010000675         1185 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_476749, whole genome shotgun sequence.
ACCESSION   DATCGC010000675 DATCGC010000000
VERSION     DATCGC010000675.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1185)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1185)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1185
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_476749"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            203..>1185
                     /locus_tag="VIJ87_06495"
     CDS             203..>1185
                     /locus_tag="VIJ87_06495"
                     /inference="COORDINATES: protein motif:HMM:NF012379.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid--tRNA ligase-related protein"
                     /protein_id="HEY5444110.1"
                     /translation="MTIPFIEENDQTAARHAHLEALRALVGNVYPNKFERSEVVEAGR
                     EDTISRIVEKFRAFEPKSPPDGRPAVEEIELANQQLNEFAVRLAGRIASPPRVMGKAA
                     FVHLSDGIARLQIYIRRADIVGVRNDAQGGDVDGWELFHLLDHGDFIGVEGFLFVTKT
                     GELSVHVQKLQFLAKALLPLPDKMHGIHDPEIRQRQRYADLIAGSLKLEKDDSLTPRE
                     VFDRRAAAVKELRRILEDHGYVEVETPMLTSLATGAAARPFKTHHNALDIDLYARIAP
                     ELYLKRLLVGGFEKVYELNRNFRNEGISTRHNPEFTMLEFYWAYADVNQMM"
BASE COUNT          284 a          296 c          317 g          288 t
ORIGIN      
        1 gggagaatga gagcctttct gcacaccgct ccaatctgat cacagctcca gacttttgca
       61 agtggttctt tagcttgtcg ctgagagttg ttatcaagtg tctttgaggg catacgacta
      121 gacagacgca tatcggacac aagctcattg cagacctctc gcgccctccc tataatcaac
      181 gctttctctg gagacgacac ttttgactat tccgttcata gaagagaacg accaaacagc
      241 agcacgtcac gctcacctcg aggctttgcg cgcgctcgtt ggaaacgttt atccaaacaa
      301 gttcgagcga agtgaggtgg tcgaagcggg acgcgaagac acgatcagtc gcatcgttga
      361 gaagtttcgt gcattcgaac caaagagccc acctgacggg cgtcctgcgg ttgaagagat
      421 tgaactggct aaccaacagt tgaatgagtt tgctgttcga ctggctggaa gaattgcatc
      481 accgccaaga gtgatgggca aggccgcctt tgtccatctt tctgatggta tcgcgcgcct
      541 gcaaatctac attcgtaggg ccgacatagt tggtgtccga aacgatgccc agggtggaga
      601 cgtcgatggc tgggaactgt tccatctact ggatcacggt gacttcatcg gggtcgaggg
      661 ttttctgttt gtcacgaaga ccggagagct ttcggtccac gtgcaaaagc tacagtttct
      721 tgccaaggca ctattaccgt tgccggacaa aatgcacggc atacacgatc cggagattag
      781 acaacgacag cgctacgcag atttgattgc cggtagtttg aagctcgaga aagacgattc
      841 tctgactcct cgtgaagtct ttgatcgtcg cgcagccgca gttaaagagt tgcgtcgcat
      901 tctggaagac catggttacg tcgaggtcga aactccgatg ttgacgtcgt tggcgaccgg
      961 cgccgctgct cgtccattta agactcacca caatgcgctg gacattgatc tgtacgcgcg
     1021 tatcgctccc gagctgtact tgaaacgctt gctagtcggc ggatttgaaa aggtctacga
     1081 gctgaatcga aactttcgca atgaaggtat ctcgacgcgt cacaatcctg agttcacaat
     1141 gctcgagttt tactgggcct acgctgatgt gaatcagatg atgga
//
LOCUS       DATCGC010000676         1513 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_443016, whole genome shotgun sequence.
ACCESSION   DATCGC010000676 DATCGC010000000
VERSION     DATCGC010000676.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1513
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_443016"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(272..505)
                     /locus_tag="VIJ87_06500"
     CDS             complement(272..505)
                     /locus_tag="VIJ87_06500"
                     /inference="COORDINATES: protein motif:HMM:NF028255.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holin"
                     /protein_id="HEY5444111.1"
                     /translation="MFDKLFWRDALERALKTFAQAVLAVIGVAATTPVTGFDWPTILL
                     TGATAAVISLLTSFVSVGSSNTVSPASLVKRGF"
     gene            complement(568..1434)
                     /locus_tag="VIJ87_06505"
     CDS             complement(568..1434)
                     /locus_tag="VIJ87_06505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444112.1"
                     /translation="MTTDIKWLFLGDLQIPYHDVRAVSLVMDVIRTWKPDAIDIVGDI
                     DDQLEYSTYSDGTTDEFFNQLKAKSKNNEKLTIEYEKKLANGDEAEKPVLEDIDPLPM
                     IKEYADEAKRFYADVRSIAKKADIHVSLGNHDIRVFKYIDRKAPEVIDLLTPDLLWGL
                     DDQGMSWRWYHERPFERFGGIHVHHGITSTVTGLAVKNDIEEYGVSLVRGHDHRGGVV
                     YRSYMMPGRSLAGMGTGHLSDVDAYGMRYADNPRWEQGFGIAHVVDDKAHLQFIPIRD
                     YVCVVDGHIFKG"
BASE COUNT          343 a          389 c          354 g          427 t
ORIGIN      
        1 aataagaatg tggtggctcg gggatatctc cccgctgtac tgctagttgt actgattctc
       61 gcgtacggtt gaccatggct gcggcctctt ttgtggtaaa ggccttttgc ttgtgtcgct
      121 gtacgtacgt ataattgaga gagaccttct tgtgttgtgg aaaattccac gcgacaagaa
      181 ggtccttccc gcgatgtatc ctaagtagtt ggtgaagttc accatctagg aaccagtgaa
      241 tattagttct ccactgtctg gtacctcgca cttagaaacc tcgctttact agtgatgctg
      301 ggctcacggt gttgcttgag cctacactga caaaagaggt aagcagtgag attaccgctg
      361 ctgttgctcc tgtcaacagg attgtaggcc agtcgaagcc cgttacgggt gtcgttgctg
      421 ctacaccgat gaccgccaaa acggcctgag cgaatgtctt tagagcacgc tcaagggcgt
      481 ctctccaaaa taacttgtcg aacatatgta tcctcccttg tagtgagata cattcattct
      541 atcaccttgg aagtctaaaa tcaaagttta gcccttgaat atgtggccgt caaccacaca
      601 gacgtaatcc ctaatcggaa tgaactgcaa gtgtgctttg tcatctacta cgtgagcaat
      661 gccgaagccc tgctcccatc taggattatc tgcatagcgc ataccatagg catctacgtc
      721 agaaaggtgc cccgttccca taccggccaa actgcggcca ggcatcatgt aggaacgata
      781 aacaacgccg ccacggtggt cgtggccgcg cacgaggctt acgccgtact cttcgatatc
      841 gttcttaact gcgaggccgg taaccgtaga ggtaatcccg tgatgtacgt ggatacctcc
      901 aaagcgttca aatggtcgct cgtgatacca gcgccaggac atgccctggt cgtccagtcc
      961 ccataacagg tctggcgtca gcaggtctat gacctctggt gccttacggt caatgtactt
     1021 gaacactcta atgtcgtggt tgcccagcga aacgtgtatg tcggctttct tggctatgct
     1081 ccgtacgtcg gcatagaatc tcttagcctc gtctgcgtat tcctttatca ttggcagcgg
     1141 gtctatgtct tccaataccg gcttctcggc ttcatcgccg ttggctaact ttttctcata
     1201 ttctattgtt aatttctcgt tgttcttgga cttagccttt aactgattaa agaactcatc
     1261 tgttgtaccg tcggaatacg tcgagtattc caactggtcg tcaatgtctc caactatgtc
     1321 aatcgcgtcg ggcttccacg ttctgataac gtccataacc agtgataccg ctcgtacatc
     1381 gtgatagggt atctgtaggt cgcccaagaa caaccattta atgtcggttg tcaatattac
     1441 ctttcaatcc ttacgtagca gagcgcggat gaacttggct tcattcttgc cagcgtcctt
     1501 atatccgatg taa
//
LOCUS       DATCGC010000677         1171 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_375265, whole genome shotgun sequence.
ACCESSION   DATCGC010000677 DATCGC010000000
VERSION     DATCGC010000677.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1171)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1171)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1171
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_375265"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..959
                     /locus_tag="VIJ87_06510"
     CDS             <1..959
                     /locus_tag="VIJ87_06510"
                     /inference="COORDINATES: protein motif:HMM:NF017745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF885 domain-containing protein"
                     /protein_id="HEY5444113.1"
                     /translation="SALKHEQATFAEAAQRIDSNKAPSDVFKEIQNEHPAGKDLLPEI
                     TKKVEAIRKYVVDQKLVTIPTEIRAQVKATPQYKRATSFASMDSPGPFEKRAAEAYFY
                     VTPPDEDWTEQQQNEWLTRFNPYSSDIIAIHETYPGHYVQFLHLNASKATKAEKVFGA
                     TSFVEGWAHYCEKMMIDAGFGNVYGPNVTDEEIKQAAKYRMAESQQALLRLCRLCVSI
                     KMHTEGMSVEEATKFFQENCYVPEKPARIEAMRATFDFGVVNYSLGKLQILKLRQDYE
                     VQEGENFSLKKFHDELLDHGMLPIRLLRQIMLKDQADWGEVL"
BASE COUNT          311 a          285 c          314 g          261 t
ORIGIN      
        1 tgtccgcatt aaaacacgaa caggcgacct tcgctgaggc cgcacaaagg attgattcaa
       61 acaaggcgcc ctccgatgtg ttcaaagaaa tccagaacga acatccggct ggcaaagact
      121 tgcttccgga gataaccaaa aaagtggagg cgatccgcaa atacgtcgtc gaccaaaaac
      181 tggttaccat tccaaccgag attcgggcgc aggtaaaggc gacgcctcag tacaaacggg
      241 cgacgagttt cgcgtcgatg gattcacccg gtcccttcga gaaacgagcg gcggaggctt
      301 acttctacgt caccccgcca gacgaggatt ggactgaaca acaacagaac gaatggttaa
      361 ctagatttaa tccctatagc tctgacatca ttgcgattca cgaaacttat ccgggccatt
      421 acgtccagtt tctccatcta aacgcttcga aagcgactaa ggccgagaaa gtttttggcg
      481 ccacctcgtt tgtagaaggc tgggctcact attgcgaaaa aatgatgatc gacgccggat
      541 tcggtaatgt ctacggaccg aacgtcaccg acgaagagat caagcaggct gcgaagtatc
      601 gaatggcgga gtcccagcaa gctctgcttc gcctatgtcg tctttgtgtt tccatcaaga
      661 tgcacaccga aggaatgtca gtggaagaag caacgaaatt cttccaggag aattgttatg
      721 tccccgaaaa accggcgcgg atcgaagcta tgcgcgcaac cttcgatttc ggagtcgtga
      781 attactccct tgggaaactc cagattctta agctccgtca ggattacgag gtgcaagagg
      841 gcgagaattt ctcattgaaa aaatttcatg acgaactgct cgaccacgga atgctcccga
      901 ttcgtcttct ccggcaaata atgctgaagg atcaggcgga ttggggcgag gtgctgtagc
      961 agaagcgtag cggagatgga gtggtggagt aatggagtga tgaataatcg gctcttggta
     1021 tggcagcttt agggctgtcc taacgctcct gcttgaaatc ggcgcagcag cgtttaatca
     1081 cgaaacgtgg atccgctcct ttatcttatc gctgggttag ttggaggcgg agtagtcgtc
     1141 gtgattctca tctggtccgg acagcgtgcg c
//
LOCUS       DATCGC010000678         2044 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_443115, whole genome shotgun sequence.
ACCESSION   DATCGC010000678 DATCGC010000000
VERSION     DATCGC010000678.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2044
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_443115"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..693)
                     /locus_tag="VIJ87_06515"
     CDS             complement(<1..693)
                     /locus_tag="VIJ87_06515"
                     /inference="COORDINATES: protein motif:HMM:NF021882.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444114.1"
                     /translation="MAIPAQSRLPPGEGDTIVALSTAAGRSAIATVRLSGPSAFDIAE
                     RLVKPWPIEARRAVLCRVYDPNDHSLIDQCVVSAFPRPRSYTGDDTVEFSIHGGNAVS
                     DALITALVRTGARQAKPGEFTRRAVLNGKLDLVQAEAIGDLIDATSDAMRRVVLHQLD
                     GGLSRRIEQLRNALVDLEALLAYDIDFPEEDHGQINRARVCEQADTVQQVLQSLLETR
                     SATELLREGALVV"
     gene            complement(656..1471)
                     /locus_tag="VIJ87_06520"
     CDS             complement(656..1471)
                     /locus_tag="VIJ87_06520"
                     /inference="COORDINATES: protein motif:HMM:NF024874.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY5444115.1"
                     /translation="MRVTYIGHATLLIDIGSQRLLTDPNFDTALGRFLPRVSKPGIAL
                     ADLPPLDAILITHAHADHLSFRSLDFLARHVPIFAPPALAAWLIRLGYSQTRPLPADG
                     QVAIGDVVVHASQAQHQGSRYAIDRWRSAANMYLMDAGNETCFFAGDTGLTPETHRVV
                     SEIVHENARQLDIALLPIGHAPWWKPGFRRGHLSADDALSLFDRLQARYLIPYHWGTF
                     NHVTSGAYDAINRLKLILPGHVRRADVRILEPGDTLEHTPDNGDSSTITTASG"
     gene            complement(1529..>2044)
                     /locus_tag="VIJ87_06525"
     CDS             complement(1529..>2044)
                     /locus_tag="VIJ87_06525"
                     /inference="COORDINATES: protein motif:HMM:TIGR03592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YidC/Oxa1 family membrane protein insertase"
                     /protein_id="HEY5444116.1"
                     /translation="SMKMSRLQPELAEIQKRYKSDPQRMQSEIMRVYRDHGMSPFSSL
                     SGCLPMLLPMPILFALFFVFQNTIEFRGVPFLWLADISLKDPYFIVPIIMGLSMFVLS
                     IIGMRNSPPNPQAKMMAYVLPVMMTVFFLNLASGLNLYYAVQNLTAIPQQWLISNERA
                     KSRTGPSTAHA"
BASE COUNT          483 a          533 c          584 g          444 t
ORIGIN      
        1 tactaccagc gcaccttcgc gaagcagctc agtcgcggac cgggtttcaa ggagactttg
       61 cagtacctgt tgtacagtgt cagcctgttc acacacacgc gctcggttga tctgtccatg
      121 gtcctcctct ggaaaatcaa tgtcgtaggc cagcaacgct tcgagatcaa ccaacgcatt
      181 tcggagctgt tcgattcgac gtgagagtcc tccgtccagt tgatggagga cgactcgtcg
      241 catcgcatcc gaggtagcgt caattaggtc accaattgcc tcggcttgta ccagatcaag
      301 cttcccattg agaacggccc ttcgtgtgaa ttcacccggt tttgcttgac gcgcgcctgt
      361 acgaacgagc gctgtgatga gtgcatccga gaccgcattg ccaccgtgaa tagaaaactc
      421 tacagtgtcg tccccagtat atgaacgtgg acgcgggaag gctgacacga cacactgatc
      481 gatcaatgaa tgatcgttag ggtcgtatac ccgacagagt acagcacggc gtgcttcgat
      541 tggccagggt tttacaagcc gttctgctat gtcgaatgcg gaaggtccac tgagccggac
      601 ggttgcaatg gcactcctgc ccgcggcggt tgacagagct acaatcgtgt cgccttcacc
      661 cggaggcagt cgtgattgtg ctggaatcgc cattgtccgg agtatgctcg agggtatcgc
      721 ccggctcgag gatgcgcaca tccgctcggc gaacgtggcc tggtagaatc aacttcagcc
      781 tgttgatcgc gtcgtacgca cccgaggtta cgtggttgaa cgttccccaa tggtagggaa
      841 tgagataccg agcttggagg cggtcgaata gtgagagggc gtcatcagca cttagatgac
      901 cacgtcggaa gcctggtttc caccaaggtg cgtgaccaat cggaagaagc gcgatgtcca
      961 gctgccgggc attttcgtgg acgatttcac tgaccacacg atgcgtttcc ggagtgagcc
     1021 ctgtgtcgcc ggcaaagaaa cacgtttcat tgccggcatc catcaaatac atgttggcag
     1081 cactccgcca gcgatcgatg gcgtaacggc tcccttgatg ttgagcttgc gatgcgtgaa
     1141 cgacaacatc gccaatcgca acttgaccat ctgctggaag aggtcgggtt tgcgagtacc
     1201 ccagccttat aagccacgct gcgagggccg gcggggcaaa aatcggtaca tggcgagcaa
     1261 ggaagtcgag cgaccgaaac gagagatggt ctgcgtgcgc gtgagttatg aggatcgcat
     1321 cgagcggcgg tagatctgcg agtgcaattc caggtttgct aactcgcggg agaaaccgtc
     1381 ctaacgcagt atcaaagttc ggatcggtaa ggagtcgttg gctaccgatg tcgatgagaa
     1441 gtgtcgcatg gccgatgtac gtgacgcgca tggacgatat ctatatgcac gtctgacacc
     1501 aggctatcag ctgtcccggc gtaccaagct acgcgtgggc tgttgagggc cctgtcctac
     1561 tcttcgcccg ttcgtttgag atcagccact gctgaggaat cgcagtgaga ttctgaaccg
     1621 cgtaatacag attcaggccg gaggccaagt ttaggaagaa cactgtcatc atcacaggta
     1681 gaacataagc catcatcttt gcctgcgggt tcggtggtga gttccgcatg ccaatgatgg
     1741 acaaaacaaa catcgatagc cccatgatga tgggcacgat gaaataaggg tccttgagcg
     1801 agatatccgc taaccaaaga aaaggcacac cacggaactc gatcgtgttc tgaaagacaa
     1861 agaacagcgc gaacaggatc ggcattggca acagcatcgg gagacaaccc gaaagtgagc
     1921 taaatggact catgccgtgg tcccgataaa cgcgcatgat ttcggactgc atgcgttgtg
     1981 gatccgactt gtagcgcttt tgaatttccg caagctctgg ctgcagacga ctcattttca
     2041 tact
//
LOCUS       DATCGC010000679         2094 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_375294, whole genome shotgun sequence.
ACCESSION   DATCGC010000679 DATCGC010000000
VERSION     DATCGC010000679.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2094)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2094)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2094
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_375294"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            100..1116
                     /locus_tag="VIJ87_06530"
     CDS             100..1116
                     /locus_tag="VIJ87_06530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444117.1"
                     /translation="MGEAKQPARTYNQNHIPRKYTPGKRRVSIYWSWSYPWESQRSPA
                     EMENRFSTMTEVRNVLWPFYETPEWSAANFLQGIAGTLELFHRSALAFQEVAGEVSGH
                     PVAVFQRVDQAGYKQPVDERILNDTDTLLIFGLDHLLSEQEAEPEEIEALREWLKREG
                     TCLMIGPHHDVGFTDDLKQRQVEYQHHGDALVPRQQRFSQYTRSLLKAFDVPVINQWG
                     LRPALVKGTKDIAPLTAFRDLDKLGLLENVPTLNFHPHLPHYALTNDDGKTVQVLARQ
                     PIDPDRPHPFTAAGNTEFNCLLWLPPNEKRAGDIVMVDSTNFTTLFGGTDSLKNFWKN
                     IATV"
     gene            1159..>2094
                     /locus_tag="VIJ87_06535"
     CDS             1159..>2094
                     /locus_tag="VIJ87_06535"
                     /inference="COORDINATES: protein motif:HMM:NF044706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444118.1"
                     /translation="MLELDDIQSGVLRPRPGPYEATYIVLRIDDRKAGKELMGRISKV
                     VTSAANPTSPLADTWVSASLTYQGLKALGVPQQSLDSFSWEFRQGMAARAKDLGDVGE
                     SAPENWESPLGTSDVHVIIVAVSPSAEQLEAALAPARTTYQSMEGITAIWRQNCHALP
                     GDKEPFGFKDGISHPAIEGSGIPGTNPKEQPLRAGEFVLGYPDELGGIQKTEPELLGR
                     NGTYVVFRKLHQRVADFRRYLDANSKDPHEEELLAAKMMGRWRSGAPLALCPFHDDPE
                     LGADRQRNNDFLFEADDPAGHKTPGGSHIRRTNPRD"
BASE COUNT          554 a          554 c          546 g          440 t
ORIGIN      
        1 aagaaggctt taaagataaa agcggctttg tccgacatgc tcgatcaaat gcaataaccg
       61 cgaatcacaa ttcggtcttc ctggaaaggg gttcgtaata tgggcgaagc aaaacaaccc
      121 gcgcgtacat acaaccaaaa ccacataccg cgtaaataca cacccggtaa acgccgagtc
      181 agtatctact ggtcatggag ttacccctgg gaatcacaac gcagcccagc agaaatggag
      241 aatcgattct ccacaatgac cgaagtgcgc aacgtgctct ggccgttcta tgaaacgcca
      301 gaatggagcg cggcaaactt tcttcaaggc attgccggca cgttggagtt gttccatcgc
      361 tccgcactcg cattccagga ggtcgcgggt gaagttagcg gccatccagt tgcagtattc
      421 caacgcgttg accaggccgg atacaaacaa ccggttgacg aacgcatcct caatgacact
      481 gacacactgc ttatatttgg cttagaccat ctactatcag agcaggaagc agaacctgaa
      541 gagatcgaag cactccggga gtggctcaag cgggaaggga catgcttgat gattggaccg
      601 catcatgatg tcggcttcac tgatgatctg aaacaacgac aagttgagta tcaacaccat
      661 ggcgatgcgc ttgtgccgcg gcaacagcga ttcagtcaat acacgcgctc gctgctgaaa
      721 gcgtttgacg tgccggtaat aaaccagtgg ggcttacgtc ctgcgctcgt caaaggcaca
      781 aaagacatcg ccccgctaac cgcttttcgt gacttggaca aacttggcct gctcgagaat
      841 gtccctacgc ttaactttca tccgcactta cctcactacg ctctaactaa cgatgatggc
      901 aagacggtgc aggtactcgc gcgtcagccg attgaccccg atcgcccaca tccattcaca
      961 gctgccggca ataccgagtt caactgtctt ctgtggctgc cgccaaatga aaaacgtgca
     1021 ggagacatcg taatggtcga ttcgacaaac tttacgacgc tcttcggcgg caccgacagc
     1081 ctgaaaaact tctggaagaa catcgctaca gtctagcgtg taaaaaaccg gggatccgtt
     1141 acgaaagagg cgaacgtcat gctcgagctc gacgacattc aaagcggcgt acttcgtcca
     1201 cggcctggcc cgtacgaggc tacttacata gtgcttcgca tcgatgatcg caaagccggt
     1261 aaggagttga tgggacggat ttctaaagtt gtgacttctg ctgccaatcc caccagtcca
     1321 ttggcagaca cctgggtaag tgcctcattg acataccagg gtctgaaggc gcttggagtt
     1381 cctcaacagt cactggatag cttctcatgg gaattccggc aagggatggc ggcacgcgca
     1441 aaagacttag gtgacgttgg agagagcgct cccgagaatt gggaaagtcc actcggaacg
     1501 tctgacgttc acgtgattat cgtagccgtt tcgcctagtg cggagcagtt ggaggcagcg
     1561 cttgctccag cgagaaccac atatcagagc atggaaggaa tcacggcaat ctggcgtcaa
     1621 aactgtcacg cgttacctgg tgataaagaa ccttttggct tcaaggacgg cattagtcat
     1681 ccggctattg aaggaagcgg tattccaggc accaatccaa aggaacaacc gctaagagcg
     1741 ggtgagtttg tcttgggcta ccctgatgag cttggtggta ttcagaagac tgagcctgaa
     1801 ctgctcggac gaaacggcac ttacgtagtt tttcgtaagc tccatcaacg agtggcagac
     1861 ttccgccgat acttagacgc taactcgaag gatccacacg aagaggagtt gctagcggcc
     1921 aagatgatgg gacgctggcg tagcggtgcg ccgctagcgc tctgtccgtt tcatgatgat
     1981 cccgaactcg gcgcagaccg gcagcgcaat aacgattttc tttttgaagc agacgatcca
     2041 gcaggtcaca aaactccagg cggctcgcat atacgtagaa caaatccacg cgat
//
LOCUS       DATCGC010000680         1193 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_177397, whole genome shotgun sequence.
ACCESSION   DATCGC010000680 DATCGC010000000
VERSION     DATCGC010000680.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1193)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1193)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1193
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_177397"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..945)
                     /locus_tag="VIJ87_06540"
     CDS             complement(<1..945)
                     /locus_tag="VIJ87_06540"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5444119.1"
                     /translation="MSPRKVLKSSAWLVCLLAYLSIAVGSVFAQTESIAELKERADQL
                     LKEVKYVEAVPLLEKIVAAEPKNADVHYSLGSALLGQGANASDDATRKALRIRARNEF
                     IKAKELGNDVPNIDAMIQAIPADGSESDFSVNRQAQAMMVNAEAFFSRGKMDEALKEY
                     QRALALDPKLYEAALFSGDVYMQKEDFGQAEVWYQKAIAIDPNRETAYRYSATPLMKQ
                     GKTDLARGRYIEAFISEPYNKFARAGLVSWGRETRTTLAHPKIDIPTNVTFDEKGDAK
                     INLDTSMLLGADDGKFAWIMYGTTRSTWHKEKFAKTFPN"
BASE COUNT          273 a          315 c          280 g          325 t
ORIGIN      
        1 gttcggaaag gtctttgcga acttctcctt gtgccaagtc gaacgtgtag tcccgtacat
       61 gatccaggca aatttgccgt cgtccgctcc aagcaacatg ctggtatcaa ggttaatctt
      121 cgcgtcacct ttttcgtcaa aggtaacgtt agtaggaatg tcgatcttcg gatgagcgag
      181 agttgttcga gtttcccgtc cccagcttac gagacccgca cgagcgaatt tattgtacgg
      241 ttctgaaatg aacgcctcga tgtaacgtcc gcgagctaag tcagtcttgc cctgtttcat
      301 cagcggagtt gctgagtaac gataggctgt ttctctgttg gggtcgattg caattgcttt
      361 ttggtaccag acctcagctt ggccaaagtc ttccttttgc atgtagacgt ccccggagaa
      421 cagcgccgcc tcgtagagtt ttggatccaa tgcaagtgcc ctttgatact ctttcaaggc
      481 ctcatccatc tttccccggg agaagaacgc ttcagcgttg accatcatcg cttgtgcttg
      541 tcgatttact gagaagtccg actcagatcc gtcggcaggt atggcttgaa tcatcgcatc
      601 aatgttaggt acgtcattgc caagctcttt cgctttaata aactcattgc gggcccgaat
      661 ccgtaacgcc tttctcgtag cgtcatctga tgcattcgca ccttgtccga gcaacgcaga
      721 accaagtgaa tagtgcacat cagcgttttt tggttcggcc gcgacaatct tttccaaaag
      781 gggaacggcc tcgacatact taacctcttt aagcagttga tctgcccgtt ccttcaactc
      841 ggcaatgctt tccgtttgtg caaaaactga accaactgcg attgagagat aggccaacag
      901 acagaccagc caggctgagg acttcaaaac ttttcgaggt gacatagttt cgctccacga
      961 ggaatttgca aactttttga agggtgactt aaccgtaact gggactagcg gtattttcaa
     1021 gtcccagtaa ggaatggtga actggcccgt ttcaacctct cccagtccga cgtaagatct
     1081 ttcagtacaa atgcagctgg ctttcgcgcg tacccccacc gtaccgcact caatagaaat
     1141 ctttctgccg ccccggcaat gaaggcgtta cgttgtgaga cccgcttacg ctc
//
LOCUS       DATCGC010000681         1907 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_375304, whole genome shotgun sequence.
ACCESSION   DATCGC010000681 DATCGC010000000
VERSION     DATCGC010000681.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1907)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1907)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1907
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_375304"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            105..434
                     /locus_tag="VIJ87_06545"
     CDS             105..434
                     /locus_tag="VIJ87_06545"
                     /EC_number="4.2.1.96"
                     /inference="COORDINATES: protein motif:HMM:NF013494.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008124 -
                     4-alpha-hydroxytetrahydrobiopterin dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006729 - tetrahydrobiopterin biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4a-hydroxytetrahydrobiopterin dehydratase"
                     /protein_id="HEY5444120.1"
                     /translation="MSELSSRQCVPCRGGVPPLQGEEITTLLNQLAGWEVVNQHHLKK
                     NYRFADFREALTFVNGVADLAEEQGHHPDICFGWGQAEITIWTHKIDGLTESDFILAA
                     KIDSRRA"
     gene            692..>1907
                     /locus_tag="VIJ87_06550"
     CDS             692..>1907
                     /locus_tag="VIJ87_06550"
                     /inference="COORDINATES: protein motif:HMM:NF018004.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1015 family protein"
                     /protein_id="HEY5444121.1"
                     /translation="MPSSVGGEMAVIRPFRALRPQADKAKSVASVPYDVVNTDEAREL
                     AKGPLSFLHVSRPEIDLPPGTDLYSDAVYRKAAENFEALIANCPLEMETEPSLYLYKL
                     VMGEHEQVGIIACCAVDEYDNNTIRKHERTRRDKEDDRTRHMLTLKAQTGPVFLTYRG
                     REEIDSQVAVILSTEPLFDLTADDGIKHTIWRITETDELVKRFEGVPLLYIADGHHRA
                     ASASRARAQLREGNSSHTGNEDYNYFLTVIFPDSQLQILAYNRVVKDLNGLSKDQLLS
                     EIKRQFTIQEDATPAPIKRGYWSMYLDGKWYGLQLSPDATLPVGNVALLDVSVLQDRL
                     LDPILGIQDVRTDKRIDFVGGLRGTKELERLVDEGKAAVAFSLFPTTIEELLMVSDAG
                     EIMPPKSTWFEPK"
BASE COUNT          476 a          480 c          509 g          442 t
ORIGIN      
        1 cggccggtgc agtagcccga ctgtcaagga gggctcgcgc ctgatgagcg atcgatgatg
       61 ccctccttaa cagtcgggct accgcaccgt gtatggagaa aactatgagc gaactatcaa
      121 gtcgacaatg tgtaccttgc cgtggcggag tgccgccgtt acaaggcgaa gagatcacca
      181 cgctcctgaa tcaactcgcg gggtgggaag ttgttaacca gcatcacctc aagaagaatt
      241 accgcttcgc ggatttcaga gaagcgctga cgtttgtgaa tggagtcgcc gaccttgctg
      301 aggagcaggg ccatcatccg gacatttgtt ttggttgggg ccaggctgag atcacaatct
      361 ggacacacaa gatcgacggg ctgacggaga gtgatttcat attggcggct aagatagatt
      421 cgcgtcgggc ttaaaagaat ggtctttggc ttttggtctt tggtcttacg tctttgactc
      481 gcgctgctct cttaccctaa gaccaaaaac caaaagccca aggcccgatt tctaaatgac
      541 aactgaaaaa tgtcaaatga gaaatgacca ataattcttt ttcccccacc gcttgttcta
      601 ccatcctcag cttgatagtc ttaggccata agccttaacc attatctttt gtaacgagcg
      661 gaaggacctc gggcaatctg cgcccgcgga tatgccttca tcggtgggag gtgaaatggc
      721 ggttattcgt ccttttcgtg ccttgcggcc acaagctgat aaagcaaagt ccgtggccag
      781 cgtgccttat gacgtcgtca atactgacga ggcgcgcgaa cttgcaaaag gacctcttag
      841 ctttcttcat gtctcacgac ctgaaatcga tcttcctccc ggcactgatc tctacagcga
      901 cgctgtttat cgtaaggctg cggagaactt cgaggcgctg atcgcaaact gcccgctcga
      961 aatggagact gaaccaagcc tgtaccttta caagctggtg atgggtgaac atgaacaggt
     1021 gggcatcata gcgtgttgcg ccgttgatga atacgacaac aatacgattc gcaaacacga
     1081 acggacccgg cgtgacaaag aagacgatcg cacgcgtcac atgttgacgc tgaaagcgca
     1141 aactggtccg gtgtttctga cctatcgagg ccgcgaggaa atcgacagtc aagtcgcagt
     1201 tatactctcc actgagccgc tcttcgacct gaccgcagat gatggaatca aacacacaat
     1261 ctggcgcatc acggaaacgg atgagttggt gaaacgtttt gagggagtgc cgctacttta
     1321 tattgccgac ggtcatcatc gagctgccag cgcgagccgt gctcgagcac aactccgaga
     1381 gggcaactcg tcacatacgg ggaacgaaga ttataactac ttcctcacgg tgatctttcc
     1441 ggattcgcag ctgcaaattc tcgcctacaa ccgcgtcgtt aaagatctga atggcttgtc
     1501 gaaggaccag ctgcttagcg agatcaagcg acaatttacg attcaggagg atgcgacccc
     1561 ggcccccatc aaacgcggat actggagcat gtatcttgac ggtaaatggt atggacttca
     1621 gttatcgccc gacgcaactt tgcccgtcgg gaatgttgcg ctgttggatg taagcgttct
     1681 tcaggatcga ctactcgatc caatcctcgg cattcaagat gttcgcacag acaaacgaat
     1741 cgatttcgtg ggtgggctgc gagggacaaa ggaacttgag cgtttggtcg atgaaggtaa
     1801 ggcagcagtc gcgttttcgc tatttccaac cacaattgag gagttattga tggtgtcgga
     1861 cgcaggtgag atcatgccgc cgaaatcgac atggtttgaa ccgaagt
//
LOCUS       DATCGC010000682         1066 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_312115, whole genome shotgun sequence.
ACCESSION   DATCGC010000682 DATCGC010000000
VERSION     DATCGC010000682.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1066)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1066)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1066
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_312115"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..273
                     /locus_tag="VIJ87_06555"
     CDS             <1..273
                     /locus_tag="VIJ87_06555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444122.1"
                     /translation="FTIGAGKPQDVRVRTFFYPHWKAFADGKELGVRPDTDGALLLSA
                     PAEASSVTLEFREPGRVRVAALASMLGCLMIAALLFLAKPLKSAFV"
     gene            312..>1066
                     /locus_tag="VIJ87_06560"
     CDS             312..>1066
                     /locus_tag="VIJ87_06560"
                     /inference="COORDINATES: protein motif:HMM:NF021635.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-pyruvoyl-tetrahydropterin synthase-related
                     protein"
                     /protein_id="HEY5444123.1"
                     /translation="MTSVESFSPNQVEHQGKRHHLIIACLVSALVLLPIMIYGIPYGG
                     DLFNHFRFALPLYDSIRSGIWYPGWLAESNAGLGDPRFRFYPPGLYYLMSAIRFVTGG
                     WYSSGIVSIVLLSILGAIGAYFWARNFFPSRTSMWVAIFYSIAPYRLNEVYQAAMLSE
                     FAACSVLPFAFAFIERICRRRDWRDIVGLGVSYALIILTNLPIAVIASLSLATYALVR
                     IDRKQFVKTLTSLAGSVALGLAASAFFWFKMIT"
BASE COUNT          221 a          277 c          263 g          305 t
ORIGIN      
        1 ttcaccatcg gcgcgggcaa accgcaggac gttcgggtgc gcactttctt ttatccacac
       61 tggaaagcat ttgctgatgg aaaggaattg ggagtcagac cggataccga cggtgccttg
      121 ctgttaagtg cacctgctga agcatcatca gtaacgttgg agtttcgtga accaggtcga
      181 gtcagggttg cggcactcgc aagcatgctg ggatgtttaa tgatcgcagc gttgcttttc
      241 ctggcaaaac cattgaaatc ggctttcgtt tagaatcaat gacaacaggc gagaagatac
      301 gtagaaacac aatgacttca gtagagtcat tcagcccgaa tcaagttgaa caccagggaa
      361 agcggcatca cctgatcatc gcctgcctgg tttcggcttt ggttctcttg ccaatcatga
      421 tctatggcat accctacggc ggcgatctgt tcaatcactt tcgttttgct ctccctttgt
      481 acgattcaat tcgttccggt atttggtacc caggttggct ggcagaatct aatgctggtt
      541 tgggtgatcc gcgctttcgt ttttacccgc ctggtttgta ctacctcatg tctgcaatac
      601 gttttgtgac tggtggttgg tacagcagcg gaatcgtgtc catcgtccta ctttcgatcc
      661 tgggagctat tggcgcctac ttctgggcca gaaacttctt tccttccagg acttcaatgt
      721 gggtagccat tttctacagc atcgcaccct accgcttaaa cgaagtctat caagcagcca
      781 tgctgtctga gtttgcagcc tgctcggtct taccgttcgc attcgccttc atcgagcgta
      841 tctgccgtcg ccgagactgg cgagatatcg tgggcctggg agtttcgtat gctctaatca
      901 ttctcaccaa cttaccgatt gccgttattg catcactctc acttgcgacc tatgcgcttg
      961 ttcgaatcga tcgaaaacag ttcgttaaga cactgaccag cctggctggc tcggtcgccc
     1021 ttggccttgc cgcaagcgcg ttcttctggt tcaagatgat tactga
//
LOCUS       DATCGC010000683         1078 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_177470, whole genome shotgun sequence.
ACCESSION   DATCGC010000683 DATCGC010000000
VERSION     DATCGC010000683.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1078)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1078
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_177470"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            49..>1078
                     /locus_tag="VIJ87_06565"
     CDS             49..>1078
                     /locus_tag="VIJ87_06565"
                     /EC_number="3.2.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF013469.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galactosidase"
                     /protein_id="HEY5444124.1"
                     /translation="MIRRPTPSKTRIICLLLCVSLLFLCEANGDAQQQRLPHLRKQGT
                     ATQLIVDDKPFLVLAGELGNSSSSGQEYMRPVWPKLAALKLNTVLIPVYWELIEPVEG
                     KFDFTLVDGLIQDARKYNLRLVPLWFASWKNSMSCYAPSWVKTDQQRFPRSQDKNGAG
                     MEILSPFNKENFEADARAFAAFMRHVREVDGNDHTVIMVQVENEIGMIPDSRDRSTVA
                     NQLFSERVPAELMNYLSERKEQLIPEFRTAWAANGFKTSGTWEEVFGKGPATDEVFMA
                     WYFARYVDRVTEAGKKEYSLPMFVNAALIRPGHMPGQYPSAGPLPHLIDIWRAGTSKI
                     DFFSPDIYF"
BASE COUNT          252 a          281 c          290 g          255 t
ORIGIN      
        1 aagcgtaacg ggaggcggcc ccagagtgtc gcccggtcac tgtcaacaat gatccgaaga
       61 ccaaccccgt ccaaaaccag aatcatctgt ctcctgcttt gtgtttcctt gttatttctc
      121 tgcgaagcca acggcgatgc acagcagcaa cgcttacctc atctacgaaa acaaggcact
      181 gccactcagc tcatcgttga tgacaaaccc ttcctggtgc tcgccggcga actgggaaac
      241 tcgtcgtcct caggtcagga gtatatgcgg cctgtttggc ccaaactcgc ggcgctcaaa
      301 ctcaacacag ttttgattcc cgtctactgg gaactgatcg aaccggttga aggcaaattc
      361 gatttcactt tggtcgacgg cttgatccag gacgcacgca agtacaacct gcgtttagtg
      421 ccattgtggt tcgcttcgtg gaaaaacagc atgtcgtgtt acgcaccgtc gtgggtgaag
      481 acggaccagc agcgtttccc gcgctcgcaa gacaagaacg gcgcaggaat ggagatactg
      541 tctcctttta ataaggagaa ttttgaagca gacgctcgcg cttttgccgc gttcatgcgt
      601 catgtgcgtg aggtggatgg gaacgatcac accgtcatca tggtgcaagt ggaaaacgaa
      661 atcggaatga ttcccgattc acgcgaccgc agtacagttg ctaatcagct ttttagtgag
      721 cgcgtgcctg ccgagttgat gaactatctt tcggagcgca aagaacagct gattcctgag
      781 tttcgcaccg cgtgggcggc gaatggcttc aagacaagtg gcacgtggga agaagttttc
      841 ggcaaagggc cagcgactga cgaggtcttc atggcctggt actttgctcg ttacgttgat
      901 cgcgttacgg aggctggtaa gaaagagtat tcactgccga tgtttgtaaa cgcggcattg
      961 attaggccgg gacacatgcc tggacagtat ccaagtgctg gtccgctgcc gcacctaatc
     1021 gacatttggc gagccggcac gtcgaagatc gattttttct ctccagatat ctacttcc
//
LOCUS       DATCGC010000684         1338 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_208990, whole genome shotgun sequence.
ACCESSION   DATCGC010000684 DATCGC010000000
VERSION     DATCGC010000684.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1338)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1338)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1338
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_208990"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..353)
                     /locus_tag="VIJ87_06570"
     CDS             complement(<1..353)
                     /locus_tag="VIJ87_06570"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY5444125.1"
                     /translation="MDSALSTVVPLFRANDSLFHSALDGIAREDLLRRPHDNSNPLIW
                     VAGHAMTSRWSLTKISGEDMENQWAKMFGRGATVDSNVSYPEASEIVSLWDKVTEKLM
                     SRLETLKDDELSKPVS"
     gene            complement(377..>1338)
                     /locus_tag="VIJ87_06575"
     CDS             complement(377..>1338)
                     /locus_tag="VIJ87_06575"
                     /inference="COORDINATES: protein motif:HMM:NF017984.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="winged helix DNA-binding domain-containing
                     protein"
                     /protein_id="HEY5444126.1"
                     /translation="WALGQRTVDCSDDAVEQAFTDGRILRLHLLRPTWHFVTPEDVRW
                     LLELTAPQVNHVSSYYYRKSELDHGVFKKTNSVLAKTLEGGKQLTRGELRLAIKRAGV
                     EPGDSVRLGHIMFRAELDAVVCSGARKGNQFTYALLDERAPNGRTLQPDEALAELTER
                     YFKTRGPATIQDYAWWSGLTASQAKRGVEIVGTQLKKEVIDEEMYWTSRTKKKMAGDI
                     NRRAHLLPPYDEYFISYKDRGAAIHPNFTQKTIAARLVFDAPLTLDGQVVGGWKRIFG
                     KDAVTIQLKPFTKLTKADRDAVMVTARKYASFLGKDDRVEWLV"
BASE COUNT          319 a          383 c          307 g          329 t
ORIGIN      
        1 gaaacgggtt tcgaaagttc atcgtctttc agcgtctcaa gacgcgacat caacttctca
       61 gttaccttat cccaaagcga aactatctcc gaagcttcag gatacgaaac attcgaatca
      121 acagtcgcac cgcgaccaaa catctttgcc cactgattct ccatgtcttc gccacttatc
      181 ttcgttaacg accatcgtga cgtcattgca tggccagcca cccagatgag gggatttgaa
      241 ttatcatgcg gccggcgcaa gagatcctcg cgagcgatgc cgtctaacgc gctgtgaaaa
      301 aggctgtcgt tggcccgaaa gaggggaact acggttgaga gagctgaatc catatgaaga
      361 atacctcgcg actaatctac accaaccatt cgactcgatc atcttttcca aggaagcttg
      421 cgtactttcg tgcagttacc atcactgcat ctcggtccgc cttggtcaac tttgtaaacg
      481 gcttgagttg aatcgttacg gcatccttcc cgaaaatcct cttccagcca ccaaccactt
      541 gtccgtccaa agtcagtggc gcatcaaaaa ccaaacgcgc ggcaatagtc ttctgcgtaa
      601 agttcggatg tatcgcagca ccacgatcct tgtaagagat gaaatactcg tcgtacggcg
      661 gcagcaagtg ggctcgacgg ttaatgtcgc cagccatttt cttcttcgtt ctcgacgtcc
      721 aatacatttc ctcgtcaatc acctccttct tcaactgcgt tccaacgatc tcgacgcctc
      781 gcttcgcttg agaagctgtc aacccagacc accacgcgta atcctgaatt gtcgccggtc
      841 ctcgagtctt aaaatatcgc tcggtaagtt ctgccagcgc ctcatcgggt tggagcgttc
      901 gaccattcgg cgcacgttcg tcgaggagag cgtaggtaaa ctgattccct ttcctcgctc
      961 cgctgcaaac aacggcatcg agttctgcgc gaaacatgat gtggcccaat cgaactgaat
     1021 cgccaggctc aacaccagca cgtttgattg ccagccgaag ctcaccgcgc gtgagttgtt
     1081 tgccaccttc gagagttttg gcaagaacgc tgttggtctt tttgaatact ccgtggtcga
     1141 gttctgattt tcggtagtaa taactgctga cgtgattcac ttgcggagcc gtcaactcta
     1201 gtagccagcg aacatcctcg ggcgtaacaa agtgccaggt gggacgaagc aggtgcaatc
     1261 gtagaatccg accatcagtg aaggcttgtt ccactgcatc atcgctacaa tcaactgttc
     1321 gttgcccgag cgcccact
//
LOCUS       DATCGC010000685         1506 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_312176, whole genome shotgun sequence.
ACCESSION   DATCGC010000685 DATCGC010000000
VERSION     DATCGC010000685.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1506
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_312176"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..675
                     /locus_tag="VIJ87_06580"
     CDS             <1..675
                     /locus_tag="VIJ87_06580"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY5444127.1"
                     /translation="ELGLARVEQIACEARELGVRDIFITGGEPFLLEEIGEILIACAA
                     AAPTTVLTNGMLFTGRRAETLQALPRDRIVLQISLDSATPDLHDFHRGAGTWSRTREG
                     IQRARELGFRVRLAATISNDAEAAEFRQFLDEEKIAEEDRVIRRIALRGVASEGVAVS
                     RMDLVPEVTITAEGVYWHPVGAEDNDLLVTREIFPLSESFAAVRRAFDLEREHANKLA
                     MIFNCA"
     gene            complement(768..>1506)
                     /locus_tag="VIJ87_06585"
     CDS             complement(768..>1506)
                     /locus_tag="VIJ87_06585"
                     /inference="COORDINATES: protein motif:HMM:NF024376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PhnD/SsuA/transferrin family substrate-binding
                     protein"
                     /protein_id="HEY5444128.1"
                     /translation="CQSYEAQVLALLAQSAEVVPRIDIAWNTNLAFLQSDEWSDHACR
                     PIAMRDTDLGWMTKIVSVNGGPVSTLDDLRGRTLAVGSRDSGHAAILPIHFLEQQGLH
                     EERDYRALRFNSDVGKHGDTGTSEVEVVRAVLDGRADAGAIGSPFWNAVRKDRLVPEG
                     GLREIWSSPPYNHCMFTARPGFDREQESRFVEALLAMSYDNPAHRPILEAEGLQRWLT
                     PHIDGYGALREAAAQQGFFKQVFAKSA"
BASE COUNT          348 a          403 c          424 g          331 t
ORIGIN      
        1 gaattgggac tcgcgcgggt ggaacaaatc gcatgtgaag caagggaact cggtgtgagg
       61 gacatcttca tcactggagg cgagccattt ctattggaag agattggcga aattctcatt
      121 gcttgcgccg cagccgctcc aaccacagtg ctgacgaacg gaatgttgtt taccggaaga
      181 cgagctgaaa ccttacaagc actaccgcgc gatcgaatcg ttctccaaat cagtttagac
      241 agcgcgacgc cagatctcca cgacttccat cgcggagccg gaacctggtc gcgcacaaga
      301 gaaggtattc agcgcgcgcg cgaactcggc tttcgagttc gactggcagc aactatttcg
      361 aacgacgctg aggcggctga gtttcgtcaa tttctcgacg aagaaaagat tgctgaagaa
      421 gatcgagtga tacgccggat cgcgttgcgt ggtgttgcga gtgaaggtgt tgctgttagt
      481 cgaatggatc tagtgccgga agtaacgatt accgctgagg gtgtttactg gcatccagtc
      541 ggcgctgagg acaacgatct gctagtgacg cgagagattt ttcctttgtc cgagtcgttc
      601 gccgctgtgc gccgcgcgtt cgatcttgaa cgcgaacatg cgaataagct ggccatgatc
      661 tttaactgtg cgtgagcatg ggccaagagt tctaatcgac gggttcagaa ctaacaagaa
      721 ggaagcctgc acatttctgc catcctgttc acacgaatgc cggctgccta agccgacttc
      781 gcaaatactt gtttgaagaa tccctgttgg gccgcagctt cgcgcaaggc accgtaacca
      841 tcgatgtgag gtgttagcca acgttgcaac ccttcggcct cgagtattgg gcgatgagcc
      901 gggttgtcgt agctcatggc taagagtgct tccacaaatc tcgactcctg ttcacgatca
      961 aagccaggcc tcgcagtgaa catgcagtga ttgtaaggag gagaagacca tatctcacgc
     1021 aggccgcctt caggtaccag acgatctttg cggacagcat tccagaacgg actgccgatc
     1081 gcaccagcat ccgcgcgtcc gtcgagtaca gcacgcacca cttccacttc actggtgcca
     1141 gtatcaccgt gcttgccgac atcgctgttg aagcgtagcg ctcgatagtc ccgttcctcg
     1201 tgcaagccct gctgctccaa aaagtgaatg ggaaggattg cggcgtgtcc gctgtcgcgg
     1261 ctgccaaccg cgagagtccg acctcttaag tcatcaagcg tggagacggg accgccgttg
     1321 accgagacga tcttagtcat ccaaccgaga tcggtgtcgc gcatagcaat aggccgacaa
     1381 gcatggtcgc tccactcatc cgattgtaag aaggcgaggt ttgtgttcca ggcgatatcg
     1441 atccgtggca caacctcagc tgattgggcc aacagtgcga gcacttgtgc ttcgtagctc
     1501 tgacac
//
LOCUS       DATCGC010000686         3259 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_78866, whole genome shotgun sequence.
ACCESSION   DATCGC010000686 DATCGC010000000
VERSION     DATCGC010000686.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3259)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3259)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3259
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78866"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..607
                     /locus_tag="VIJ87_06590"
     CDS             <1..607
                     /locus_tag="VIJ87_06590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444129.1"
                     /translation="AFAISFALLFLVWYNQHKFFRRYGLQDTVTIVLNAILLFVVLFY
                     VYPLKFLFTFLVSRFTGGHGEVRLPNGNIESMLENDGQMGTLMLIFGIGYLAIFVVFV
                     LLHIHAYRKKEQLELNSLETFDTISSIQEAGLNCAIAILSISLVWFGGSRFAGFAGMA
                     YMLTGVVMAIHGFIMGSRRRRIEEHFVSQLPESVGAAELQS"
     gene            610..1206
                     /locus_tag="VIJ87_06595"
     CDS             610..1206
                     /locus_tag="VIJ87_06595"
                     /EC_number="2.1.1.100"
                     /EC_number="2.1.1.334"
                     /inference="COORDINATES: protein motif:HMM:NF016107.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxylmethyltransferase
                     family protein"
                     /protein_id="HEY5444130.1"
                     /translation="MGIHFESLPAIVFGAIILSWFAFVIVFLTKEKLPQSPDKKRDPR
                     SVKGIVLQGLSFGIVWGAHRPYFTPIIRTQRNVEILIGVVTIALAFGSVGFVMAAVKA
                     LGKEWSLTARVVEGHKLATHGPYSLVRHPIYTGMLGMLLSTGLAMSYWPALVISIGVF
                     FIGTIIRMRIEEGLLREMFGIEFDDYARRVSAIVPGIY"
     gene            1232..2686
                     /gene="pyk"
                     /locus_tag="VIJ87_06600"
     CDS             1232..2686
                     /gene="pyk"
                     /locus_tag="VIJ87_06600"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: protein motif:HMM:NF004491.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEY5444131.1"
                     /translation="MRKAKILITLGPASREPEVIEQLLAAGANGVRINMSHGSHLEKT
                     ADIERARAAAKKMGISLAVLVDLSGPKIRTGELKNHQPVKLEKGAVFTITTERIVGDA
                     QRVSTNYPDLARVVKTGTRLLLDDGAIALVADSTTETDIICRVVDGGFLSERKGINLP
                     GVALPIDSLTEKDVIDLKWAVTQNADYIALSFVRKAADCEKAKRLIREAGGTAPLIAK
                     IEKAEAMDHLDEIIAAADGIMVARGDLGVETSVELVPVYQKTIIEKSVIAGKMVITAT
                     QMLQSMVHNPRPTRAEASDVANAVWDGTDCVMLSNETAAGDYPVEAVATMSRIIQSAE
                     TGRQKRAEGFSRWLGKQSGRVSRALCEAAAFASDEMGTTVTAVFTASGLMARRLSTLR
                     PDQRIIALTHKPEVLNELSLIWGVEPLLTKNATSTEQLLKAGEETLLEAGIVKKGDTI
                     VVMAGRLSGLGLSSSVTVLTVAGDLGPHLSELPN"
     gene            2670..>3259
                     /locus_tag="VIJ87_06605"
     CDS             2670..>3259
                     /locus_tag="VIJ87_06605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444132.1"
                     /translation="MNFQINMSAGEFFDLIYPTVVVISAVISTWVLTSARKRFPLYIS
                     LFLAAVTFFLPLIVVPLYLILLFFSYPKHTRPIRGRYIVPCIYLGIILTSFAVYRYLD
                     EQSVDAHLSRASFAKLHSDPLTAIQEFRDALKLEDNAHTHKLLAATLDECGYVTEAIT
                     EYRTAELGGERDDAINYHLALLLERINHKGESILEF"
BASE COUNT          799 a          788 c          836 g          836 t
ORIGIN      
        1 cgcgttcgca atcagctttg ccctgctctt cctcgtttgg tacaaccagc acaaattttt
       61 cagacgttac ggactccagg acacggtcac aatagttctt aacgccatcc tgctgtttgt
      121 agtcctgttc tatgtctatc cactgaagtt tctttttaca ttcctggtga gcagattcac
      181 tggaggacat ggtgaagttc gcttgccaaa cggcaacatc gaatcaatgc ttgagaacga
      241 cggtcaaatg ggaacattga tgttgatctt tggcattggc tacctggcaa tcttcgtggt
      301 gttcgttctg ttacacattc atgcctaccg taaaaaggaa caactcgaac tcaattcact
      361 tgagacgttc gatactatca gcagcattca agaggctgga ctcaattgcg caattgccat
      421 cttgtcaata tcacttgtct ggttcggagg gtcgaggttt gcaggcttcg cggggatggc
      481 atatatgctg accggtgtcg tgatggcgat acacggattc atcatgggat cacgaaggcg
      541 tcgaattgaa gaacattttg tttcgcagtt accagagtca gtcggagcgg cagagttaca
      601 gagttaacga tgggaattca tttcgaatcg cttccggcaa ttgtctttgg cgcaatcatc
      661 ctctcctggt tcgcgtttgt gatcgttttt ctaaccaaag aaaagctacc gcaatcacct
      721 gataaaaaac gcgaccctcg atcggtcaag ggtatcgtgc ttcaaggtct ttcgtttgga
      781 atcgtttggg gtgcgcatcg accctatttc actccaatca ttcgaacaca gaggaacgta
      841 gagatcctga tcggcgtggt gacgatcgca ctcgcgtttg gttcagtcgg ctttgtaatg
      901 gcagccgtaa aggcgctcgg aaaagaatgg agtctgacgg ccagggttgt cgaaggtcac
      961 aaattggcaa cacatggccc ttattctttg gttcgccacc cgatttacac tggtatgttg
     1021 ggaatgttgt tatcaacagg cttagcaatg agctattggc ccgcgctggt gatttcaatt
     1081 ggtgtcttct ttattggcac aataatccgg atgcgcattg aggaagggct cttacgagag
     1141 atgttcggga tcgagtttga cgactacgcc aggcgtgttt cggcaattgt cccgggaatc
     1201 tattagtact gtctattcgt taggaatcat tttgagaaaa gcaaaaatac ttatcacact
     1261 cggaccagct tcacgtgagc cggaagtcat cgaacagtta ctcgcagccg gcgccaatgg
     1321 cgttcgcatc aacatgtctc atggcagtca cctggaaaag acggctgaca ttgagcgtgc
     1381 cagagcggcc gctaaaaaga tgggaatctc ccttgcagtg ctggtcgatc tatccggccc
     1441 aaagatccgc acaggcgaat tgaaaaatca tcagccagtt aagcttgaga agggcgctgt
     1501 tttcaccatt acgaccgagc gaattgtagg tgatgctcaa cgagtctcga cgaattatcc
     1561 cgatcttgcg cgagtcgtta agaccggcac acgtctactc cttgacgacg gcgcaattgc
     1621 cctcgtagcg gacagtacaa ctgagacaga cattatttgt cgtgttgttg atggtggttt
     1681 cctttccgag cgtaaaggaa tcaacttgcc cggcgtcgcc ttgccaatcg actcgttgac
     1741 agagaaagac gtcatcgatc tcaagtgggc cgttactcaa aatgccgact acatcgctct
     1801 gtcgttcgtt cgtaaagctg ctgactgtga gaaagcgaaa cggttgatcc gggaagctgg
     1861 cggcactgct ccgttgatag ctaagattga gaaggcggaa gcaatggatc acctcgacga
     1921 gatcattgcc gctgcggacg gaatcatggt tgctcgtggc gaccttggcg ttgagacaag
     1981 cgttgagtta gtccctgtct accaaaagac aatcatcgaa aaatccgtca tagccggaaa
     2041 gatggtgatt accgccacac agatgttgca gtcgatggta cacaatccga gaccaacgcg
     2101 tgccgaagca tcagacgtgg cgaatgcagt ttgggacggg acagattgcg tgatgttatc
     2161 gaacgaaact gcggctggag attatccagt cgaagccgtg gcgacgatgt cgcgcatcat
     2221 acagtcagcg gaaaccggtc gtcagaagcg tgccgagggt ttttcaaggt ggctcggaaa
     2281 acagtcggga agagtgagcc gcgcattgtg tgaagcagca gccttcgcct cggatgaaat
     2341 gggcacgacc gtaacggcag tctttaccgc gtcgggacta atggctcgac gtctttcaac
     2401 tctacgacct gatcagcgaa tcattgcctt gactcacaag ccagaggtac tgaatgaact
     2461 gtcactgatc tggggtgtgg aaccgctcct aaccaagaat gcgacttcga ccgaacaact
     2521 cttgaaggca ggtgaagaaa cattgcttga ggccggcatt gtgaagaaag gcgacacgat
     2581 tgtggtaatg gcaggccgtc tgtcaggatt gggcctatca agctcggtta cggtcttaac
     2641 agttgccgga gatttgggtc cacatctaag tgaacttcca aattaacatg tcggcgggtg
     2701 agttttttga tctcatctac ccgactgtag tcgttatctc cgccgtaatt tccacctggg
     2761 tcctcacctc agcccggaaa agattccctc tctacatatc tttattcctg gcagcagtaa
     2821 cttttttctt gccgctcatc gttgtgcctc tctacctaat tcttctgttt ttctcttatc
     2881 ccaaacacac caggccgata agaggtagat acattgtccc gtgtatctac ctgggaataa
     2941 ttctcacgag cttcgctgtc taccgctacc tcgatgagca atctgttgat gcccatctgt
     3001 ccagagcgtc ttttgcgaag ctacattccg atccgcttac agcaattcag gaatttcgag
     3061 atgctcttaa actggaagat aacgcacaca cacacaagct gttggctgcc actctcgacg
     3121 agtgtggtta cgtcacagaa gccatcaccg agtatcggac cgcagaactg ggtggtgagc
     3181 gagacgatgc gatcaattat cacctggcat tattgttgga acgcatcaac cacaaaggtg
     3241 agtcgatatt ggagtttaa
//
LOCUS       DATCGC010000687         1054 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_443244, whole genome shotgun sequence.
ACCESSION   DATCGC010000687 DATCGC010000000
VERSION     DATCGC010000687.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1054)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1054
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_443244"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(152..628)
                     /locus_tag="VIJ87_06610"
     CDS             complement(152..628)
                     /locus_tag="VIJ87_06610"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HEY5444133.1"
                     /translation="MIPRNLLMPSKNFIMDPFGFLSDANRMMDEPLSVLRPKLPMDEN
                     YWPIRPWTPACDIFETDSEIVLKFELPEIKKENVKITMENHVLTVRGERKFEEETNRE
                     NYHRVERHYGDFMRSFTVPMSVDATKISAEFKNGVLTVTLAKREEAVAKQIDVKIG"
     gene            complement(676..>1054)
                     /locus_tag="VIJ87_06615"
     CDS             complement(676..>1054)
                     /locus_tag="VIJ87_06615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444134.1"
                     /translation="EVLAMTKDERNLLTLLQEELSFIESGGYGRSVRTPNLSKSIFQD
                     SLSCLNYGFPYRAHPCSECQLIDFVAPEHRSEMVPCHHIALDAAGDTVEDLEEEGNES
                     KVERLVKQWLRARIDEIETAKGH"
BASE COUNT          237 a          283 c          245 g          289 t
ORIGIN      
        1 cgtaaccatc tgatttttca taatagatcc gggcctccac aagtgttcga ttcgagagct
       61 aaacgcttct aatagaatcg gccgcggacc acttccggtc tcccgcggcc gattcgacac
      121 cgtaccagca acaaataaga caaaccgcgc cttagccgat ctttacgtca atctgtttcg
      181 ctacagcttc ctcgcgtttg gccagcgtca ctgtcagcac gccatttttg aattcggcgc
      241 tgatcttcgt ggcatcgacg gacatcggaa cagtgaagct ccgcatgaag tcgccatagt
      301 gtcgctcaac gcgatgatag ttctcgcgat tggtctcctc ttcgaacttg cgctcaccgc
      361 gaacggtgag cacatggttc tccatggtga tcttgacgtt ctccttcttt atttccggca
      421 gttcaaactt gagcacgatt tcactgtcgg tctcgaaaat gtcgcaggcg ggtgtccacg
      481 gtctgattgg ccagtagttc tcgtccatcg gaagtttcgg acgtaataca ctgagtggtt
      541 cgtccatcat tcggttggcg tccgaaagaa atccaaatgg atccatgatg aagttttttg
      601 acggcattag tagatttctc ggaatcatgg cttctccctt cttccaattg gcaccttgtt
      661 caaggtattg ggtgctcagt gacccttcgc agtttcgatc tcgtcgattc ttgctcgcag
      721 ccactgcttc acaagacgct caacctttga ctcattacct tcctcttcca ggtcttcaac
      781 ggtgtcgccc gcagcgtcca gggcaatgtg atgacacggc accatctcac tacgatgttc
      841 gggcgcaaca aaatcgataa gttgacactc actgcatgga tgagctcgat acggaaaacc
      901 gtaattaagg cagctgagtg aatcttgaaa aatggattta gagagatttg gtgttcgaac
      961 cgagcgcccg tatcctccgc tctcaataaa gctcagttcc tcttggagaa gagtaagaag
     1021 gtttcgttca tctttggtca tggctaatac ctcc
//
LOCUS       DATCGC010000688         1654 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_443250, whole genome shotgun sequence.
ACCESSION   DATCGC010000688 DATCGC010000000
VERSION     DATCGC010000688.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1654)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1654)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1654
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_443250"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1057)
                     /locus_tag="VIJ87_06620"
     CDS             complement(<1..1057)
                     /locus_tag="VIJ87_06620"
                     /inference="COORDINATES: protein motif:HMM:NF044863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444135.1"
                     /translation="MGKPTYQAASIVAPTVEAHFARHLAHARERGEQHLAPQPDAKTI
                     EAIIDAAFWASFRPEEGRFPKISLAYLSPDQTRQPLLFERPLPLTRAVLTKLAPAVER
                     PEIHLGVWSIDNQLQVWGATRSIPSYCFVLEDIEPGLLVIKHRRIEGFGKYANVVVLK
                     GEHIKVIDEQGTSLPDCPSLLKSLLAFTASAATGKHPAMNVLVQLAASMRAHSHGGAL
                     LVVPSGSEAWRSSIAQPILYSTSPAFAPLADLMKQDVAEEKEREWELAVRRSVDTIGG
                     LTAVDGATIISDQYEVLAFGAKIRRPPGSLPVERWVVTEPIMGNESRVVQPTEHGGTR
                     HLSAAQFVYDQRDALALV"
     gene            complement(1226..1636)
                     /locus_tag="VIJ87_06625"
     CDS             complement(1226..1636)
                     /locus_tag="VIJ87_06625"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY5444136.1"
                     /translation="MAAPTLFRIILQVDDLDKAEEFYGTLLGDQGRRIPRASRHYIDC
                     GPVILALVDVTGGGTVADKPKPLPDYIYFALGNLESIHLRAKELGCLSNEDVHGANAG
                     DIVKRPWGELSFYATDPWGNGLCFVDENTLFTGK"
BASE COUNT          365 a          436 c          448 g          405 t
ORIGIN      
        1 ccacgagcgc gagggcatcg cgctgatcgt aaacaaattg agcggccgac aggtgccttg
       61 ttcctccgtg ttccgttggt tgaaccaccc tcgactcgtt tcccatgatt ggctcagtta
      121 caacccagcg ttctactggc agacttccag gaggtcttct aatcttggcc ccaaaggcta
      181 gaacttcgta ctgatcgctg atgatcgttg cgccgtcaac ggccgttaat ccgccaatcg
      241 tatccacgct tcgacgcaca gctaactccc actctctttc cttctcctcc gcaacgtctt
      301 gtttcatcaa gtccgcaagg ggagcaaacg ctggcgaagt tgaatacaga atgggttgag
      361 cgatggacga gcgccacgct tcagatccac ttgggacaac aagcaacgca cctccgtggc
      421 tgtgtgcccg cattgatgcc gcaagttgaa ccagcacatt catcgcagga tgtttgccgg
      481 ttgctgcgga tgcagtaaac gccagcagtg acttgaggag cgaagggcaa tccggaagac
      541 tggtgccctg ctcgtcgata actttgatgt gttcgccttt gaggacgacg acgttagcgt
      601 atttgccaaa accttcaata cgccgatgct tgatcacgag cagaccaggc tcaatgtcct
      661 cgagtacgaa acaataactg ggaatactgc gagtcgctcc ccacacctgg agttggttat
      721 caattgacca aacaccgagg tggatttcgg gacgttctac cgctggagcg agtttggtca
      781 acacagctcg agtcagtggt aacggtcgct cgaagagcaa cggctggcgg gtttggtccg
      841 gtgaaaggta agcaagcgaa atctttggaa agcgaccttc ttcggggcga aagctggccc
      901 agaacgcggc atcaataatt gcttcgattg tttttgcgtc aggctgcggc gcaaggtgct
      961 gctcgccgcg ttcgcgcgca tgtgccaggt gacgagcgaa atgtgcttca acggttggag
     1021 caacgatgct ggcggcttga tatgtaggtt ttcccatctg cttgttggat caagtttatc
     1081 taatctattg actcagtgtt cgtgtagtca gtacccctac gcggtagcgt gtggctcaac
     1141 ttgagaacta cggtccgtcc atagtttatt tggagccaca cgctaccgcg tagtggtact
     1201 gactggatgc cattaagttc taattctact tcccggtaaa cagcgtgttc tcgtctacga
     1261 agcagagtcc gttgccccac ggatcggtgg cataaaaaga aagctcgccc cacgggcgct
     1321 tcacgatgtc gcctgcgttg gcgccatgaa catcttcatt ggacaggcag cctagttctt
     1381 ttgcccgcag gtggatgctt tcaagattac ctaacgcgaa atagatgtaa tcgggcaatg
     1441 gttttggttt gtctgcgacg gtcccgccgc cggttacgtc gacaagcgca agaatgactg
     1501 gaccgcaatc tatgtagtga cgcgatgcgc gaggaatccg tctaccttga tctccgagta
     1561 gcgttccgta gaactcttcg gccttgtcga gatcgtccac ctgcaaaatt attctgaaaa
     1621 gagtaggtgc tgccatggga gtcctttctg gtta
//
LOCUS       DATCGC010000689         1170 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_142740, whole genome shotgun sequence.
ACCESSION   DATCGC010000689 DATCGC010000000
VERSION     DATCGC010000689.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1170)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1170
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_142740"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..617
                     /locus_tag="VIJ87_06630"
     CDS             <1..617
                     /locus_tag="VIJ87_06630"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEY5444137.1"
                     /translation="AVTGVDVSPAAIQSARQAFGNHFVLEGDPAIEAGAPYDVIYHVG
                     TIGCVADPLGLTRRLLSLLKPGGALLFNSPNRNSCWLSDQLWVDGAPPPDLVSIFPPG
                     FWARQFSAEANVEEEIESCGSDTALKIGLGKLFGRRWKAPVPVPLNQTSDHYQNGNRP
                     GRPDDSSWRAFENLILRVGRRTGLSRLAPSQPAEFGVFVKMVRK"
     gene            624..>1170
                     /locus_tag="VIJ87_06635"
     CDS             624..>1170
                     /locus_tag="VIJ87_06635"
                     /inference="COORDINATES: protein motif:HMM:NF013227.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HEY5444138.1"
                     /translation="MNPTLKKIAKTTLQQTVGRLPRSASRLTGKLARDGGTPVRNVRY
                     RPWRKYHDGNLAKWTAGMSASFREVFVSGVEGLPQPLGKKFAQTWAEYCGCKYGLLLP
                     HGTDALRIGLAAALDHDGLGYGGEVIVPNFSFIASATAALDRRFGLAFVDVDPETLLL
                     DPKRVEEAIVPGRTRAIMPVHL"
BASE COUNT          248 a          289 c          332 g          301 t
ORIGIN      
        1 atgcggtgac cggggtcgac gtgtcgcctg cggcgattca gtcggcacga caagccttcg
       61 gaaatcattt tgttctcgaa ggtgatccag ctatcgaagc cggtgcacct tacgacgtta
      121 tctatcacgt tggaacgatc gggtgcgttg cagatccgtt gggactgact cggcgacttc
      181 tttctttgtt aaagccgggc ggagcacttc ttttcaattc cccaaacagg aacagttgtt
      241 ggctaagtga tcaattatgg gtcgacggag cgccaccacc ggatcttgtc tcgatttttc
      301 cacctgggtt ttgggctcga caattttcgg ctgaggcgaa cgtcgaagag gaaatcgaga
      361 gctgtggttc ggacaccgct ttgaagatcg gtttaggaaa attgtttggg cgtcgttgga
      421 aagccccagt tccggttccc ctcaaccaaa cgagtgacca ctatcagaac ggcaaccgac
      481 ccggtcgtcc tgatgacagc tcgtggagag cttttgaaaa tttgatcctc agagttggtc
      541 gccgaactgg tctgtctcgt ctggcgccgt cgcagccagc tgagtttggt gtcttcgtaa
      601 aaatggtccg caagtaagtt tccttgaatc caaccctcaa aaaaatagcg aagaccactt
      661 tgcagcaaac ggttggtcgt ttgccgaggt cggcttcacg gctcaccggc aaacttgctc
      721 gagacggggg aacgcctgtt cgtaacgtac gatatcgacc ttggcgcaaa taccacgatg
      781 gcaacctcgc caaatggact gcgggcatga gtgcttcgtt tcgcgaagtg tttgtgtcgg
      841 gagttgaagg tctcccgcaa ccattaggga aaaagtttgc tcagacctgg gctgagtatt
      901 gcggttgtaa gtatggctta cttcttcctc acggtaccga tgcactacgt atcggtcttg
      961 cggccgcttt ggatcatgac gggttgggtt atggcggcga agtaattgtt ccaaactttt
     1021 cctttattgc gagcgcgacc gcggcgttgg atcgtcgttt cggacttgcg ttcgtcgacg
     1081 ttgatcccga aacgcttttg ctcgatccga aacgagttga ggaagccatt gtgccgggaa
     1141 gaaccagggc gatcatgcca gtgcacttat
//
LOCUS       DATCGC010000690         2141 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_14061, whole genome shotgun sequence.
ACCESSION   DATCGC010000690 DATCGC010000000
VERSION     DATCGC010000690.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2141)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2141)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2141
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14061"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..223
                     /locus_tag="VIJ87_06640"
     CDS             <1..223
                     /locus_tag="VIJ87_06640"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ECF-type sigma factor"
                     /protein_id="HEY5444139.1"
                     /translation="DVMSVERASELVALDEALSILAAIDNRKSKVVELRYFGGLSLEE
                     TADVLGVSLMTVRRDWRAAKAWLYRELKK"
     gene            220..2136
                     /locus_tag="VIJ87_06645"
     CDS             220..2136
                     /locus_tag="VIJ87_06645"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY5444140.1"
                     /translation="MTSGQWQQIDTVLQQVLDLPSAERKSFIAEVCEGDDELTREVCS
                     LAEAYEESGDFIEQSALMSDAEILFSFGDNNIGRELGPYRIKERLGIGGMGEVYLAED
                     QRLNRSVALKMLPDYISDEFRLNRFRKEARAASGLNHPNIITIHEVGEHDGVRFIATE
                     FIDGETLRDLISRNELTPNLALEIAEQVCAALIAAHAAGIVHRDIKPENVMRRPDGIV
                     KLLDFGIAKLIEPQTESSATSSTKTELGVVMGTVSYMSPEQARGLNVDERSDLWSFGV
                     VIHEMLSGRLPFTAATRLDTMVAILEREPQPLSLGEAIQKILDKCLAKNTDDRYQTAN
                     DLLTDLKHASSTLRDQQIANLNTKTPARSRRRWVFATAIVTMLLFGVTWGVMHQRFAN
                     KSSVAHSVVSVPKLYSQMSEPEKLAFIDREEQRISTLMGERPAKLNADALEAIKRRVD
                     WYLTSKSNVSAAFARARPFLPTIGRSFRERKVPVIIGVYLPMIESDYETCYENENGSK
                     GLFQFMPGTAELYGVPRNQMCDAEKMTPVAAHYMADRIAELGDDAQSLTLVLLSYTTG
                     AEWVRETLRKLRETGNYDRNFWTMFDKRKELGDKFQNEVAGYVPQFFAAAIIGENPEA
                     FGLDGVPLSRYAEE"
BASE COUNT          544 a          480 c          606 g          511 t
ORIGIN      
        1 tgacgtaatg tccgttgagc gggcgtccga attagtagca ctagatgaag cattatcaat
       61 actcgctgcg attgataatc gaaagagcaa ggtagtcgag ctgcgttatt tcggcggttt
      121 gagtttggaa gaaacagctg acgtgttggg cgtttcactg atgactgtta gacgtgattg
      181 gcgtgccgca aaggcgtggc tgtacagaga gctcaaaaaa tgacttccgg acagtggcaa
      241 cagatcgata cggtgcttca gcaagtactc gacttgccgt cggcagaacg gaagtccttc
      301 atcgctgagg tctgcgaagg cgatgacgag ctcacccgag aggtttgttc gctggctgaa
      361 gcttacgagg agtctggtga tttcatagag cagtcggctt tgatgtctga tgccgagata
      421 ctgtttagtt ttggagacaa caacattggc cgagagcttg ggccataccg aatcaaagag
      481 cgactcggta ttggaggaat gggtgaagtc tatctggccg aggatcagag gctaaatcgc
      541 tcggtagctc tgaagatgct tcccgactac ataagtgatg agtttcgctt gaatcgattt
      601 cgtaaggaag cgcgtgctgc ctcgggactc aaccatccca acatcatcac aattcatgaa
      661 gttggtgaac acgatggcgt tcgcttcatt gctacggaat tcatcgacgg cgaaacgtta
      721 cgcgacctga tttctcgtaa tgaactgacg ccaaacctcg cgcttgaaat tgccgagcag
      781 gtatgtgctg ctctcattgc tgcgcacgct gccggaattg ttcatcgaga catcaagccc
      841 gagaacgtca tgcgacggcc ggatgggatt gtgaagttgc tcgacttcgg aatagcaaaa
      901 ctgatcgaac ctcaaaccga gagttctgcg actagttcaa ctaagactga actcggagta
      961 gtgatgggga ctgttagtta catgtcacct gaacaggcgc gtgggctaaa cgttgatgag
     1021 cgcagtgatc tttggagttt tggggtagtt atccacgaga tgctaagtgg tcgtttgccg
     1081 ttcactgcgg caactcgact agacacgatg gttgcaatcc tggaacgcga gccgcagccg
     1141 ttgtctctgg gtgaagctat acagaaaatc cttgataagt gtctcgccaa gaacactgac
     1201 gacagatacc agactgcaaa tgaccttctg acagacctca aacacgcaag ctctacattg
     1261 cgcgaccagc aaatcgccaa cctgaatacg aagacgccgg cgagatcgcg aaggcgatgg
     1321 gtttttgcga ctgccattgt gacgatgctt ctctttgggg tgacttgggg agttatgcac
     1381 cagcgctttg ccaataagtc atcggttgct cactcagtgg tttcggttcc aaagctctat
     1441 tcgcagatga gtgagccgga aaaactcgca tttatcgatc gtgaggaaca gcggatctca
     1501 accttgatgg gtgagcgtcc agcgaaactt aacgccgatg cactggaggc aatcaaaaga
     1561 agggtggatt ggtacctgac aagtaagagt aatgtgtcgg ctgcgtttgc acgcgcacgg
     1621 cctttcctcc cgacgatcgg acggtcattc agagaacgta aagtgcctgt catcatcggt
     1681 gtttacctgc cgatgattga gtcagattat gagacttgtt acgaaaacga gaatggttcg
     1741 aaaggactat ttcagtttat gccaggaact gccgaactat acggtgtgcc cagaaatcag
     1801 atgtgtgatg cggaaaagat gacgccggtg gctgcgcact atatggcgga tcgaattgca
     1861 gagcttggcg atgacgcgca gagtctcacg cttgttttgt tgagctatac gacaggtgcg
     1921 gagtgggtgc gcgagacgct tcgcaaacta agagaaactg gaaactacga cagaaatttc
     1981 tggacgatgt ttgataagag aaaagagctt ggcgacaaat ttcaaaacga ggttgccggc
     2041 tacgtccctc aattctttgc cgccgctatc attggtgaga atccggaggc ctttggacta
     2101 gatggagttc cgctgtcgcg ttacgccgaa gagtaaacgc c
//
LOCUS       DATCGC010000691         1152 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_43052, whole genome shotgun sequence.
ACCESSION   DATCGC010000691 DATCGC010000000
VERSION     DATCGC010000691.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1152)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1152
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43052"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..302
                     /locus_tag="VIJ87_06650"
     CDS             <1..302
                     /locus_tag="VIJ87_06650"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY5444141.1"
                     /translation="MFFEELETAIRSVHAGSRRIPAVIAERLAERMSGSALTDRELEV
                     LELIVKGQSNKEIAKSLTISEATVKSHINSLLSKLGVTDRTQAATTALQRGLVHL"
     gene            733..>1152
                     /locus_tag="VIJ87_06655"
     CDS             733..>1152
                     /locus_tag="VIJ87_06655"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY5444142.1"
                     /translation="MRTNTDQVINPSENKMAQLFRSAFPGLPGLLVWLCLANPIAVAA
                     QQGATATLRGTVLDPVGAVIAGARVTATQPSVGISRETTTNDSGVFVFSNLSPGSYEV
                     RIRAEGFKDKVSSAPITLQVGETVTLDATLEVGSVGEI"
BASE COUNT          277 a          297 c          312 g          266 t
ORIGIN      
        1 atatgttttt cgaagaattg gagacggcaa tcagatcagt tcacgccggc tcgcgccgta
       61 ttcccgcagt gatcgctgaa cgactcgcgg aacggatgtc tggctcagct ctgacggacc
      121 gcgagttaga agtactggag ctaattgtga aaggtcagtc gaacaaggag attgcgaaat
      181 ctctgacgat tagcgaagcg actgtaaaga gtcacatcaa cagtctgctc agcaaacttg
      241 gtgttacgga tcgcacgcag gctgcgacaa cggcgctaca acgcgggttg gtccacctct
      301 aaaaaaggat gagggatgaa agtcaggcgc aggagcagca ggcaggagca cgtgacctgc
      361 tcctgcgccg tgcacctgcc cctgactttc atccttcatc agtgctctcc aactaaagtt
      421 tgatttccaa tccaatcttc agggccatga cacgataacg cacgtctggt agcctctggc
      481 gcgttagtca atcttcccgg tccatggttc tttgagttaa aggtcggact cctacctata
      541 ctttgttgca aacttgaact ccgacttttg acgctgtcat tacgagccct ggaccgggct
      601 caccatttca agcagacgaa taccagcacc aacgctgcgg gaatcccgca ggtgtgcggg
      661 cgtacacatt tttggattcg ttggacactg cgatgaagct ccaacgaaac gactaatgca
      721 aaaggagctg gaatgcgcac taacactgac caggtcataa acccttctga gaataaaatg
      781 gcccaactgt ttcggagcgc ttttccaggt ctcccaggtc ttttagtctg gctttgcctg
      841 gccaacccga tcgcggtcgc tgcacagcag ggcgcaaccg cgacgttgag aggcactgtc
      901 ctcgatccgg ttggcgcggt aatagccgga gcgcgggtta cggcaacgca accgagtgtt
      961 ggcatctcgc gggaaactac aactaacgat agtggtgtgt tcgtgttttc taatttgtcg
     1021 ccgggatctt atgaagtacg gattcgtgcc gagggcttta aggataaggt ttcatcggca
     1081 ccgatcacgt tgcaagtagg tgaaactgtt acactcgatg cgactttaga agtaggctcg
     1141 gtcggcgaaa tc
//
LOCUS       DATCGC010000692         1442 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_408656, whole genome shotgun sequence.
ACCESSION   DATCGC010000692 DATCGC010000000
VERSION     DATCGC010000692.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1442)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1442)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1442
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_408656"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..320
                     /locus_tag="VIJ87_06660"
     CDS             <1..320
                     /locus_tag="VIJ87_06660"
                     /inference="COORDINATES: protein motif:HMM:NF019886.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sigma factor-like helix-turn-helix DNA-binding
                     protein"
                     /protein_id="HEY5444143.1"
                     /translation="RNTIRGNTRSMLRDNEYQKESTDFGSAFVEAPEEEYERQVAIQE
                     ARRALDKIKEPMRSCLLLKQQGLSYREIATTLSLKETNVGSLVARGRKEFARVYGKIG
                     GRG"
     gene            317..1180
                     /locus_tag="VIJ87_06665"
     CDS             317..1180
                     /locus_tag="VIJ87_06665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444144.1"
                     /translation="MRQCLDEGMLQSYFDGELSTSLMESATAHLALCVTCAAAARELE
                     NENALLSEAFALEFEGAVPTDRLRHRIDAAVAGIQVVRPGVRQPSAVSGFFSSLSNLF
                     SFAPQRALGYAALMIVLAFGVIFGLVKLSGKSDTNSVAIVEQPSASGVATSGSNDKNN
                     QGSVIAPIPVETVAPTPIKVAYRPVAPKSFAPKAAPVKLMPGEKAYLQTIAKLDTAIK
                     SEKKDMRPALQVEYERNLAVVDRAIAATRDAAKKNPSDPDAADFMFAAYQSKVDLLNT
                     IADARVYNRSH"
     gene            1204..>1442
                     /locus_tag="VIJ87_06670"
     CDS             1204..>1442
                     /locus_tag="VIJ87_06670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444145.1"
                     /translation="MKFSLVPAVLGIIISLAGSTPAKDETKDAKSSEKIERSTPVDSH
                     ASITLCVMSGKLTVRGWDKNEVRARSTDAEQLDFRR"
BASE COUNT          364 a          349 c          402 g          327 t
ORIGIN      
        1 cgcgaaacac gatcaggggt aatacccgtt cgatgcttcg cgataacgaa taccagaagg
       61 agagcacaga cttcggcagc gcttttgtcg aggcaccgga agaggaatat gagcgccagg
      121 tagctataca ggaggcgcgc cgggctttag acaaaattaa agaaccaatg aggagttgcc
      181 tgcttctaaa acagcaggga ctctcttaca gggagatagc caccacgttg tcattgaaag
      241 agacgaacgt aggaagtttg gtggcgcgcg gccggaaaga gtttgcgagg gtgtacggta
      301 agatcggagg cagaggatga gacagtgttt agacgaggga atgctccaga gctatttcga
      361 tggagaactt tccacttcat taatggagag cgcgactgcg catttggcgt tgtgcgtgac
      421 ctgtgcggcc gccgctcgtg aactcgaaaa cgagaacgcg ttgttgagcg aagcttttgc
      481 tttggagttt gagggcgccg ttccaaccga ccgtttgcga caccgaattg acgcggctgt
      541 cgccggcatc caggtcgtac gtccaggtgt ccgacaacca agtgctgttt ccggtttctt
      601 cagttcactg tcaaatctgt tttccttcgc accgcaacgt gcgctcggtt acgccgcttt
      661 gatgattgtg ttggcgtttg gcgttatttt tggattggtg aaattgagcg gtaaatccga
      721 tacgaattcg gttgcaatag tggaacagcc ttcggcgagt ggcgtagcaa cttccggctc
      781 taatgataaa aacaatcagg gttcagtgat tgctccgata ccagttgaga cggttgcccc
      841 aacgccaatc aaggttgcgt atcgacctgt cgcccccaaa tccttcgcgc cgaaagctgc
      901 gccagtaaaa ctcatgccgg gcgaaaaagc ctatctgcaa acgatcgcca agttggatac
      961 cgccattaag tcagaaaaga aagacatgcg acctgcgctt caagttgagt acgagcgcaa
     1021 tctagcggta gtcgatcgag caattgcggc gacccgtgat gcagccaaga aaaatccaag
     1081 cgatccggat gcagctgatt tcatgtttgc agcttatcag agcaaggtag acctcctgaa
     1141 tacgattgct gatgcgcgag tttacaatcg cagtcactga aagggccggt ttctaagttg
     1201 acaatgaagt tttccctcgt ccctgcagtg ttaggcatca tcatctccct cgcaggttca
     1261 actccagcaa aagacgaaac gaaggacgcc aagtcttccg aaaagattga acgttctact
     1321 ccagtcgaca gtcatgcttc gataaccttg tgtgtgatgt ccggcaagct gaccgtccgg
     1381 ggctgggata agaacgaagt gcgcgcgcgt tccactgatg cagagcaact agactttcga
     1441 cg
//
LOCUS       DATCGC010000693         1525 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_43061, whole genome shotgun sequence.
ACCESSION   DATCGC010000693 DATCGC010000000
VERSION     DATCGC010000693.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1525
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43061"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            187..1170
                     /gene="hflK"
                     /locus_tag="VIJ87_06675"
     CDS             187..1170
                     /gene="hflK"
                     /locus_tag="VIJ87_06675"
                     /inference="COORDINATES: protein motif:HMM:TIGR01933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0045861 - negative regulation of
                     proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsH protease activity modulator HflK"
                     /protein_id="HEY5444146.1"
                     /translation="MARPMVAESLPIKPARLILGLIACLGLIFTLFTLLFGFTSIPAN
                     SVGVKTRFGAYHDIVNPGLAYAIPYIDEIHIVPTQRLLKLEFGFTTSNATNVYQGDME
                     PGETETMITGDLNTALVPWVVQYRVTDPKTYLFGAREPEKTLRDLSESVMREVIGDRT
                     VDEVLTVGRHDIESSTLKRLADLCSQYGLGIQIQQVQLATVRPPPAVQAAFNEVNQAQ
                     QEKQTAINQAWAVYNDAVPNARGQAKEREKQAEAYAFRRVNEAKGEVQKFSLLLAEYQ
                     KAPEVTRRRLYLEAMQAILPNLQRKIIVDDSLKNILQTLPLLPADQPKVSQ"
     gene            1167..>1525
                     /locus_tag="VIJ87_06680"
     CDS             1167..>1525
                     /locus_tag="VIJ87_06680"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HEY5444147.1"
                     /translation="MSVIDVTPRPAVVSGIVRFLQSPLMSILGILFILSALKWGTLLF
                     VVPQYETVIITRFGKIVRTVTNPGLKIKLPIIDKVHRFDKRILAWDGPPTECPTKDKL
                     YIIVDCFARWRISDPFL"
BASE COUNT          373 a          395 c          397 g          360 t
ORIGIN      
        1 agcccaacgt gccaagcccg atcgctactg acaagatcat gtttttcaca ttcatgtcgc
       61 agttttgagg cgcatcagcc gatagtcaag aagcggcggt tttcggcagc tcaaagtgtc
      121 gaaggctgat tccccgaatt gaaagcttgc gcttcatggc aggttagagt caataaaggc
      181 tcactcatgg cgagaccgat ggttgccgaa agtcttccga ttaagcccgc aaggctgatt
      241 cttgggttga tcgcctgcct cggacttatc ttcacgctct ttactctgtt gttcggtttc
      301 acttcgattc cggcaaactc cgtcggggtg aaaacacgct ttggcgccta ccacgatatc
      361 gtcaatcctg ggctcgctta tgcaattcca tatatcgatg agatacacat cgtgccgacg
      421 cagcgtttgt tgaaactgga gttcggtttc accacatcca acgcgacgaa tgtttatcaa
      481 ggcgacatgg aaccggggga aaccgaaacc atgatcacag gcgatctcaa taccgctctt
      541 gtgccgtggg ttgtacagta tcgagtcact gatccaaaaa cgtacctttt tggagcacgc
      601 gaaccagaga aaacattgcg cgatctttca gagagtgtga tgcgtgaagt gataggcgat
      661 cgcactgttg acgaagtgct cacggttggg cgacacgaca ttgaatcatc gactttgaaa
      721 cgtctggccg acctttgttc gcaatacggt ttgggaattc agattcaaca ggtacaactg
      781 gcgaccgtgc gtcccccgcc tgccgtgcag gctgccttta atgaggtcaa ccaggcgcaa
      841 caggaaaagc aaaccgccat caatcaagca tgggccgtgt ataacgatgc tgtgccaaac
      901 gcgcgcggtc aggcgaagga gcgcgagaaa caggccgaag catacgcgtt tcgtcgcgtg
      961 aatgaagcaa agggcgaagt gcaaaaattt tcactgttgc tggccgagta ccagaaagcg
     1021 ccggaggtga ctcggaggcg tctttatctg gaagcgatgc aagcgattct gcccaatctg
     1081 cagaggaaaa tcatcgtcga cgacagcttg aaaaacattc tccagacgtt gcccctactg
     1141 ccggccgatc aacccaaagt gtctcaatga gcgtgatcga tgtcactcca cgacccgcag
     1201 ttgtatcggg cattgtgcgg tttttgcaga gcccgttaat gtcgatcctg gggattcttt
     1261 tcattttgag cgccctcaaa tggggaacgc tgctgttcgt tgtccctcag tacgaaactg
     1321 tgatcatcac gcgtttcggt aaaattgttc gcacggtcac gaaccccggg ttgaaaatta
     1381 aactaccgat catcgataaa gtgcaccgat tcgataagcg tatcctggcc tgggatgggc
     1441 caccgaccga atgcccgacc aaagacaagc tctacatcat tgtcgattgt tttgcccggt
     1501 ggcggatcag cgatcccttc cttta
//
LOCUS       DATCGC010000694         1265 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_177556, whole genome shotgun sequence.
ACCESSION   DATCGC010000694 DATCGC010000000
VERSION     DATCGC010000694.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1265
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_177556"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1006
                     /locus_tag="VIJ87_06685"
     CDS             <1..1006
                     /locus_tag="VIJ87_06685"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY5444148.1"
                     /translation="FTGLSRGMNNDLARRASNVRAELIFMRPGAIQTGSSSMNLDVRY
                     AERLKTIDGIEDAIPVGRYFIQGTGGFGIEQIDGIDWERYARMNGIQVVDGQGPANVD
                     EAMIDSTKARNNNLHVGDRLKPFGGNHEYRVAGIYSPESGPRIKLTLTALQEALEATG
                     KCTFIFVKLRNADQVDAMAAKINSELPGNTIQPTREVFAGFEKTIPYLGIFLRVLVGL
                     AAVVSGLVVMLAMYTTITERTREIGILKAMGASRGYIVGIIEKEAILISLIGLVAGFA
                     VSMVAGYLIHKVYGLVFEYSWQWALTAALIGLIGGILGALYPAWRASNLDPVNALAYD
                     "
BASE COUNT          313 a          279 c          336 g          337 t
ORIGIN      
        1 ttttactgga ctctcgcgag gtatgaataa cgatctggcg cgccgggctt cgaacgtacg
       61 agctgaactc attttcatgc gacccggcgc tattcagaca ggcagttcgt ctatgaactt
      121 agacgtccgc tatgcggagc gactgaagac tattgatggg atcgaggatg cgattccggt
      181 cggccgatac tttatccagg gaactggcgg attcggtatt gaacagatcg acggaattga
      241 ctgggaacgc tacgcaagaa tgaatggtat ccaggtagtc gatggtcaag gccctgcaaa
      301 tgtagacgag gctatgatcg attcgactaa agccaggaac aataatctac acgttggtga
      361 tcgactaaaa ccttttggtg ggaatcatga gtatcgcgtc gcgggaatct attcgcccga
      421 gtctggtccg cgaattaagt tgaccctgac ggctttgcag gaagcgttgg aagcaaccgg
      481 gaagtgcacg tttatttttg tgaagctgcg gaacgccgat caagttgacg ctatggccgc
      541 caagatcaat agcgaacttc ccggcaacac gattcagcct actcgcgaag tgtttgctgg
      601 ttttgaaaag actattcctt atctcggtat tttccttcga gtactggtcg gacttgcagc
      661 ggtagttagc ggactcgtag tgatgttggc tatgtatacg accataacgg aaagaacgcg
      721 tgagatcggc atcttgaaag cgatgggagc gtcgcgtggt tacatcgttg gaatcattga
      781 aaaggaagcg atcctgatca gtctgattgg tttagtggca gggtttgccg tttcaatggt
      841 ggccggctac ctgatccaca aagtttacgg acttgttttt gaatacagct ggcagtgggc
      901 tttaactgcc gcattgattg gcttgattgg cggtatcctc ggtgcgctgt atccagcctg
      961 gcgagcctcg aacctcgatc cggtaaatgc gctagcttac gactaagttg atctcagatt
     1021 tcaaatgtcc gataaacttt agtttgtcgt tttcagctgg cagcttgcta gttttccaga
     1081 atgaaccttc gaactaacga atctgcagaa acaacgacaa actaaagttt atcggacatt
     1141 tgagatctta aatttgagat ctgagatcgg cctcagctga gatcatagat tgttcgcctt
     1201 cgcctctgag tgagaatccc tttctcaaca tcaacaggat tccaatcgtg gcccagaaaa
     1261 tgtct
//
LOCUS       DATCGC010000695         1010 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_14150, whole genome shotgun sequence.
ACCESSION   DATCGC010000695 DATCGC010000000
VERSION     DATCGC010000695.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1010
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14150"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..188)
                     /locus_tag="VIJ87_06690"
     CDS             complement(<1..188)
                     /locus_tag="VIJ87_06690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444149.1"
                     /translation="MNDLTKTINRVLSDESDVQRATAPYQADFPYERDEEAQVTRREF
                     CNFLGLTSAALFIGAGGFA"
     gene            complement(196..849)
                     /locus_tag="VIJ87_06695"
     CDS             complement(196..849)
                     /locus_tag="VIJ87_06695"
                     /inference="COORDINATES: protein motif:HMM:NF024644.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEY5444150.1"
                     /translation="MEETMFIDPQRCIGCRSCVAACRECATHKGYPMIFVDYIDRAET
                     TATMPTVCMHCNEPTCALVCPADAIKVSDDGVVMSALKPRCLDCRNCVNACPFGVPKY
                     NTQMHLQMKCDMCYDRSSEGLKPMCASVCPTGAISFGKYEQIVPLRRTKPVNVHVFGN
                     QKVETKVYLMLPTDADEVNVDGCGVFEGMLTRAEAETPTIESWIDTQVEQSDKSNEF"
BASE COUNT          222 a          276 c          248 g          264 t
ORIGIN      
        1 gcaaacccgc cggctccgat aaacaacgca gccgaagtta gccccaggaa attgcagaat
       61 tcccttcggg taacctgggc ctcctcgtca cgttcatatg gaaagtctgc ttgatatggc
      121 gcggtcgccc tttgcacgtc gctttcgtcc gagagaaccc gattgattgt ttttgttaag
      181 tcgttcattg tcgtttcaga actcgttgct cttatccgat tgttcaactt gagtatcgat
      241 ccatgattcg attgttggtg tttccgcctc tgcgcgggtt agcattcctt caaacactcc
      301 acaaccatca acattcactt cgtccgcatc ggttggcagc atgagataga ccttcgtctc
      361 gactttctga tttccaaaca cgtgtacgtt gactggtttg gtacgtcgca gcggaacaat
      421 ctgctcatac ttgccgaatg agatcgcgcc ggtaggacaa acactcgcac acatcggttt
      481 caagccttct gatgaacggt cgtaacacat gtcgcacttc atctgaaggt gcatctgtgt
      541 gttgtacttt ggcacgccaa acggacaagc attgacgcag ttgcggcaat caagacaacg
      601 cggttttagc gcggacataa cgacgccatc gtcagacacc ttgatcgcat ctgcgggaca
      661 aaccaacgcg caagtcggtt cattgcagtg catacagacg gtcggcattg tcgcggtcgt
      721 ttcagcgcga tcgatgtagt cgacaaagat catcgggtag cctttgtgtg tggcgcattc
      781 gcggcaggcg gcaacgcaag atcgacagcc gatgcagcgt tgcgggtcga tgaacatcgt
      841 ctcttccata actacctcga atcagccaca ggtgaacacg gatttacaca gataaagagc
      901 ttcaggttct cttgcaaatc ggacatggtc ttttcatgtc tgtgtccatc agtgttcatc
      961 tgtggccctt ctgcacctcg cttagtgatg cgcccttgcg ctgcctcccg
//
LOCUS       DATCGC010000696         1450 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_109502, whole genome shotgun sequence.
ACCESSION   DATCGC010000696 DATCGC010000000
VERSION     DATCGC010000696.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1450)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1450)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1450
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109502"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(148..>1450)
                     /locus_tag="VIJ87_06700"
     CDS             complement(148..>1450)
                     /locus_tag="VIJ87_06700"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEY5444151.1"
                     /translation="IYLSRIERLDPKIRSIITLTKDHALARAKAADAEIAAGKYRGPL
                     HGIPYGVKDLLDTKDIPTTYGAEPFRNRVPTADSAVVRRLNDAGAVLLAKLSLGALAL
                     NDIWFGGQTMNPWLLEEGASGSSAGPGAATAAALVAFSIGSETGGSIVSPAMRCGVTG
                     LRPTFGRVPRTGAMTLCWSLDKLGPMTRSVEDGMLVLQAITGPDAGDASSVPSRLAFD
                     VNSPVTGLKVGYVSQWMKESPATDVDRAAMETMKKLGMELKEVTLPDWPYSSLMPILF
                     AEGAASFEDLALNNQLGLLKVQVKDAWPNLFRESRFLSAVDFVQADRLRRKVALEMAR
                     VFREVDIMIVPSLRDEQLTITNFTGHPSLTMRAGFVEVAEARSDWAPDPANPLPKFNP
                     PRRVPHGITILGRLFDDGLIGQVGVTLEKVFNVVSEKPSGF"
BASE COUNT          347 a          402 c          375 g          326 t
ORIGIN      
        1 ctttcttttt caatcgcagg ccgattaatg agcgagagaa catactgaaa tatccaaata
       61 gcaagaacga tgggattaag agaagccagt tgtagatgac gcgaccgttt aagttcatga
      121 gctaagtgta aaggggagag cctcacctca gaatcctgac ggtttctcgc tcaccacgtt
      181 gaacaccttt tcgagcgtta caccaacctg tccaatcaac ccgtcgtcaa ataacctgcc
      241 caggattgta attccatgcg gtacgcgtcg cggtggattg aacttcggga gtggattcgc
      301 cggatcggga gcccaatcgc tccgagcttc cgcaacctca acaaacccgg cacgcatcgt
      361 caacgacgga tgacccgtaa agtttgtgat ggtgagttgt tcatcgcgca acgatggaac
      421 aatcatgatg tcgacttcac gaaagacacg cgccatttcc aacgctacct tgcggcgcaa
      481 gcgatcggcc tgaacgaaat caactgcgga caggaatcgc gactcgcgaa acaagttggg
      541 ccacgcatct tttacctgga ccttcagtaa tccgagttgg ttgttaagcg caagatcttc
      601 aaacgatgct gccccttcgg caaatagaat cggcattaat gaactgtagg gccagtcagg
      661 aagcgtgact tcctttaatt ccattccgag cttcttcatt gtttccatgg ctgcacgatc
      721 aacgtcagtt gccggactct ctttcatcca ctgcgagaca taaccgactt tcaaaccagt
      781 tacaggcgaa ttgacgtcga acgctaagcg acttggcaca ctcgacgcat cgccggcatc
      841 gggacccgtg attgcctgga gcaccagcat cccgtcttca actgaacgcg tcattgggcc
      901 aagcttgtcg agtgaccagc aaagcgtcat cgctccagtg cgcggtacgc gaccgaatgt
      961 tggacgaaga ccggtgacac cacagcgcat cgcaggacta acaatgcttc cgccagtttc
     1021 gctgccgata gagaaggcaa caagtgcggc ggccgtcgct gcgccgggcc ctgcactcga
     1081 ccccgatgcg ccctcctcga gaagccacgg gttcatagtt tgtccaccga accagatgtc
     1141 gttaagcgcg agtgcaccaa gggaaagttt tgcgagcagt accgcacccg cgtcgttcag
     1201 tcttcgtacc actgccgagt ccgccgtcgg aacacgatta cggaaaggct cagcaccgta
     1261 tgtcgttgga atgtctttcg tgtcgagcaa gtccttaacg ccgtagggta tcccgtggag
     1321 tgggcctcga tatttgccgg cggcaatttc tgcatcggca gccttggcgc gtgcgagtgc
     1381 atgatctttg gttagcgtga tgattgatcg gatctttgga tccaatcgtt ctattcgact
     1441 caaatagatg
//
LOCUS       DATCGC010000697         3216 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_177580, whole genome shotgun sequence.
ACCESSION   DATCGC010000697 DATCGC010000000
VERSION     DATCGC010000697.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3216)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3216)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3216
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_177580"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..450)
                     /locus_tag="VIJ87_06705"
     CDS             complement(<1..450)
                     /locus_tag="VIJ87_06705"
                     /inference="COORDINATES: protein motif:HMM:NF012787.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEY5444152.1"
                     /translation="MLLSNRKRFVAGSLTVLLTCMALGQQNHTNGTIEFSLRSIDGQT
                     VTSASLRGEVVVMAFGASWLPLSRTQLQGVRKLADEYSSRGVVVYFISTESEDSKSKN
                     FASDEQLRAFSQKYGLKVTVLRDPDGVLSKKMGVDQLPTIVILDKQGN"
     gene            complement(509..1147)
                     /locus_tag="VIJ87_06710"
     CDS             complement(509..1147)
                     /locus_tag="VIJ87_06710"
                     /inference="COORDINATES: protein motif:HMM:NF024214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEY5444153.1"
                     /translation="MKDVAAIILAAGQSKRMGAFKPLLPFGKQSVIKSCIKYLEDGGV
                     ESIVVVLGHRSDDVRKHLADTSVSFAFNPDPQSEMGASIAAGVSELPSSARATLIALV
                     DYPAIPSSVVSALIAEWAHGSRLVKPTSNGRGGHPVLVDLSLRDELLGLNPKLGLKGL
                     FDRQSGEVKRLEVDSPYIARDIDTWDDYRALYIEVFGAEPSETAKDFSNENI"
     gene            complement(1386..3080)
                     /locus_tag="VIJ87_06715"
     CDS             complement(1386..3080)
                     /locus_tag="VIJ87_06715"
                     /inference="COORDINATES: protein motif:HMM:NF011291.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004819 - glutamine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006425 - glutaminyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--tRNA ligase/YqeY domain fusion
                     protein"
                     /protein_id="HEY5444154.1"
                     /translation="MSIEETEKTLGGPSNFIRDIMIEDIKRGKHEGRVQTRFPPEPNG
                     YLHIGHAKAICLDFGLAAEFGGKCNLRFDDTNPSKEETEYVDAIMEDVKWLGFQWDNL
                     FYASDYFQQLYDWAIQLIKDGKAYVDDLSADQIREYRGTLTEPGKESPYRNRPVDESL
                     DLFERMKRGEFPDGTRTLRAKIDMSSPNLSLRDPVMYRILHMDHHRTGSDWCIYPMYD
                     YAHGQSDSIERVTHSMCTLEFDNNRSLYNWFIEQLGIFPSRQYEFDRLALTHTLLSKR
                     KLLKLVEEGLVEGWDDPRMPTLSGMRRRGYTSTAIRNFCASVGVSKTNGITQLQQLEY
                     FLRQDLNQLAPRVMCVQKPLRVVIENYPDDLVEEMDAINNPEDSSAGSRKIPFSKTIY
                     IEDDDFREDPPSKFYRLSPSREVRLRYAYLITCKEVIKDSDGRIVELICTYDPATRGG
                     NTPDGRKVKSTIHWVSADHALPAEVRLYDNLFVKEDPNEVEEGHDFTENLNPESLQVL
                     HDCKVEPSVRDAERGTKYQFERLGYYCVDRNSENKLVFNRTIGLRDTWAKIEKRGA"
BASE COUNT          745 a          832 c          801 g          838 t
ORIGIN      
        1 gttaccttgt ttgtcgagta tgacaatggt tggtaattga tcgacaccca tcttcttcga
       61 gagcacgccg tccggatcac gaagcaccgt caccttcaaa ccgtactttt gcgaaaacgc
      121 gcgcagttgc tcgtcgctcg caaagttctt tgactttgaa tcttccgatt cagtgctgat
      181 gaaataaaca acaactcccc ggctgctgta ctcgtctgca agctttctga caccttgcaa
      241 ctgtgttctg gacaacggca accatgatgc gccaaaagcc atgacgacga cttcgccacg
      301 gaggctggca gacgtaacag tttgaccatc gattgatcgc agggaaaact cgatggtgcc
      361 gtttgtgtgg ttttgctggc ccagcgccat gcacgttaac aaaactgtga gcgaaccagc
      421 cacgaacctt tttcgattgc tcagaagcat ctcgtctcct ttgtcgaaag gttcaggagt
      481 tccctccgac agtgcattag atgagccact agatgttttc gttggaaaaa tctttagcag
      541 tctcggaagg ctccgcgcca aagacttcga tatataaggc gcgataatca tcccacgtat
      601 cgatgtcacg ggcaatgtag ggtgaatcga cttccaggcg ttttacctcg ccgctttgcc
      661 tgtcaaagag gccctttagt ccgagtttgg gattcagacc caacagttcg tcgcgcaggc
      721 ttagatcgac taatactgga tgtcccccac gaccgtttga ggttggcttc acaagacggg
      781 agccgtgggc ccattcggct atcagagccg agaccactga cgacggaatc gccgggtaat
      841 ccacgagagc gatcaatgtt gcgcgggcgc tcgatgggag ctcgctcacg ccggcagcga
      901 tcgacgcgcc catttcgctt tgtggatcgg gattgaatgc aaagctgaca gaggtgtctg
      961 cgagatgttt gcgaacgtca tccgagcgat gaccgaggac gaccacaatc gactcgactc
     1021 caccgtcttc caggtacttg atgcacgact taatgacgga ttgtttgccg aagggaagta
     1081 ggggcttgaa agcgcccatg cgcttcgact gtccggcagc gagaatgatt gcggcgacgt
     1141 ctttcatttc cgatgtgctt tagagccact tgcaaaagtc gcggaatcta gtggcgatga
     1201 agtcagtacc gaaacgctgt agcgtcggct agtaacgtag cttctgctag ttctagcgga
     1261 tgtaaagagc cgacgctacc gcgtttcgct actgacttca tcgccacaaa gttgactttt
     1321 gcaagaggct ccagagaccg tcgagatcac tgagttgcta cctcacgcat ataacgcagt
     1381 tttgctcaag caccgcgttt ttcgatcttg gcccacgtat cgcgcaagcc aatggtccga
     1441 ttgaacacca atttgttctc cgagttgcga tcaacacaat aatacccaag tcgctcaaac
     1501 tgatatttcg tcccacgttc tgcgtctcgc acgctcggtt ctactttgca atcgtgcaat
     1561 acctgtaatg attcaggatt cagattttct gtaaaatcgt gtccttcctc aacctcgttc
     1621 ggatcttcct taacaaaaag gttgtcgtac agacgaacct ctgccggtaa cgcgtgatcc
     1681 gctgagaccc agtgaatcgt ggactttacc tttcgaccat caggcgtgtt accgccgcgt
     1741 gtggccggat cgtaagtgca aattagttca acaatcctgc cgtcgctatc tttaatgact
     1801 tctttgcagg taattagata agcgtatcgg agtcgcacct cgcgacttgg ggagagccgg
     1861 taaaacttgc tcggcgggtc ttcgcgaaaa tcgtcgtctt caatataaat cgtctttgaa
     1921 aaaggaatct ttctggatcc tgcggaacta tcttccgggt tattgatagc atccatttct
     1981 tccacgagat catcgggata gttttcgata accacgcgta atggtttctg cacgcacatg
     2041 acgcggggag caagttgatt caagtcctgg cgcagaaagt attcgagctg ctgtaactga
     2101 gtaatgccat tcgtcttcga gacgccaacg ctagcgcaga agttgcggat tgcggtggac
     2161 gtgtaaccgc ggcggcgcat gcccgaaagg gttggcatac gcggatcatc ccagccttcc
     2221 acaagtcctt cttcgaccaa cttcagcagc ttgcgcttgc taagcaaagt atgggtgaga
     2281 gccagacggt cgaactcgta ttgtcgcgaa ggaaagatgc caagctgttc gataaaccag
     2341 ttgtataaag aacgattatt atcgaactcc aaagtacaca tcgagtgtgt cacgcgctca
     2401 atagaatcgg actgtccatg cgcgtaatcg tacatcggat agatacacca atcactaccc
     2461 gtacgatggt ggtccatgtg gagaattcga tacatgactg ggtcgcgcag gctaaggttt
     2521 ggagagctca tatcgatctt cgcccttagc gttctcgtac catcggggaa ttcacctcgt
     2581 ttcatgcgtt cgaatagatc caaactttca tcgacggggc ggttgcgata cgggctttcc
     2641 ttgccgggct cggttaacgt gcctcgatac tcgcgaatct ggtccgcgct gagatcatct
     2701 acgtaagctt tcccgtcctt aatcaactga atggcccagt cgtacagttg ttgaaagtaa
     2761 tcagaggcat aaaacaggtt gtcccattgg aagcccaacc acttcacgtc ctccatgatc
     2821 gcgtcaacgt actccgtctc ttcttttgac ggattagtat catcgaaacg caaattgcac
     2881 ttgccgccaa actccgccgc caaaccgaag tcgaggcata tggctttggc gtggccgata
     2941 tgcaagtagc cgtttggttc tggaggaaat cgggtttgta cacggccttc atgtttgccc
     3001 ctctttatgt cctcgatcat gatgtcccga atgaagtttg atggcccacc aagtgtcttc
     3061 tctgtttctt cgatactcac gttaatgtgt tctccggttt gatttagtag ttcagtttac
     3121 aaaagatgct ggtcagggtc atctcgcggg agaattgtcc ttcttctctg tgtctctgtg
     3181 ttctctgtgt cttcgtgttg aaaatcgagt cacact
//
LOCUS       DATCGC010000698         1387 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_443406, whole genome shotgun sequence.
ACCESSION   DATCGC010000698 DATCGC010000000
VERSION     DATCGC010000698.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1387)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1387)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1387
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_443406"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1193
                     /locus_tag="VIJ87_06720"
     CDS             <1..1193
                     /locus_tag="VIJ87_06720"
                     /inference="COORDINATES: protein motif:HMM:NF013508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF11 domain-containing protein"
                     /protein_id="HEY5444155.1"
                     /translation="DVYYVYGNRDSGTGNDRLAIRRIQDNGAGGVTVGPESFVTGQVE
                     AAIPSVAVTSNGIVGVFYYTFDGFSPDAFPTFSAHLAQSSDQGVTFSDQVLLTFLSSA
                     MDNGNSRQRVLGDYMQMKAVDTCFLGAFTANGVPFGRPFANHDPIFFRVCVGEADLAI
                     TKTDSPDPVIAGNDLTYTVTVTNNGPDTATSVTVTDNLPTETTFVSCSSTGGGVCGGS
                     GNSQIVTFASLASGQSETITFVATVNCSIADGTVINNTATVNSITPDPDTSNNSATAP
                     TTVSNPPPTITNATADPSSLWPPNHRMVNVTVSYDVMDNCPLPSGSCTLSVTSNEPVL
                     GHGSGNTSPDWVVLDDHHVLLRAEREGNNHGRIYTTTITCTDSGGNSSSEQVEVTVSH
                     DQGR"
BASE COUNT          346 a          382 c          338 g          321 t
ORIGIN      
        1 gggatgtcta ttacgtttat ggcaatcgtg atagtggcac tggcaatgac cgcctcgcga
       61 tccgccgcat tcaggataac ggagcgggcg gcgtgaccgt aggaccagaa agcttcgtga
      121 ctggtcaagt agaagccgct atcccttcag ttgcagtaac cagcaacggg atagtcggtg
      181 ttttctatta cacctttgat ggtttctcac cggatgcctt cccaacgttc tcggcccatc
      241 tggcacagag cagcgaccaa ggcgttactt tcagcgatca ggtgctgttg acttttttat
      301 cctctgccat ggataatggt aattccaggc agcgagtgct gggagactac atgcaaatga
      361 aggctgtgga tacttgcttc ctcggagctt tcacggcaaa tggcgttccc tttggccggc
      421 ccttcgccaa tcacgacccg atcttcttca gagtttgtgt tggcgaagca gacctggcaa
      481 tcacaaagac cgactcaccg gacccggtga tagccgggaa cgacctgacc tacaccgtca
      541 ctgtaaccaa caacggccca gataccgcga cttcagttac tgtgactgac aaccttccca
      601 ctgagacaac cttcgtctcc tgctcttcga caggaggagg agtttgtggt ggctcaggta
      661 acagccagat tgtcacattt gcatcccttg cttcaggcca atctgaaaca ataacttttg
      721 tggccactgt gaactgttcg atagccgacg gcacagtgat aaacaacaca gctacggtga
      781 attctattac acctgatcct gacacaagta acaactccgc gacagcacct acgacggttt
      841 ctaaccctcc gccgacgatc actaatgcaa cagcagatcc atccagtttg tggccaccaa
      901 accacaggat ggtgaatgtg actgtcagct acgatgttat ggacaattgc cccttaccat
      961 ctgggtcttg caccctaagc gtgactagca acgaaccggt ccttggccac ggaagtggca
     1021 atacatctcc agactgggtc gtcttggatg atcatcatgt gctgcttcga gcagagcggg
     1081 aaggtaataa ccatggacgc atctatacga ccaccatcac ctgcaccgac agcggcggca
     1141 actcctccag cgagcaggta gaggtaacgg tgtcccacga ccaaggcaga tgataggttg
     1201 atactgagaa taacaaagcc ttcttctccc acgcggaagg accagcaagt gttacatctg
     1261 gcaattcagt aagcgcagat caaaaatatt ctgcgcggca attggctgcc gatttttaaa
     1321 caaattttgt agggcgtttc tgcgaaacgc ctttaaccat tggcgtctga ggccctacaa
     1381 tccccat
//
LOCUS       DATCGC010000699         3291 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_342324, whole genome shotgun sequence.
ACCESSION   DATCGC010000699 DATCGC010000000
VERSION     DATCGC010000699.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3291)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3291)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3291
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_342324"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1435
                     /gene="accC"
                     /locus_tag="VIJ87_06725"
     CDS             <1..1435
                     /gene="accC"
                     /locus_tag="VIJ87_06725"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: protein motif:HMM:NF006367.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_function: GO:0004075 - biotin carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HEY5444156.1"
                     /translation="LGVGRWLFAKSVMSSAYRKFKKILIANRGEIACRIIWTCKEMGI
                     KTVAVHSDVDRDSLHVRFADEAACIGPAPSAQSYLNIPAIISTAEIFNVDAIHPGYGF
                     LAESAYFAEICEACNIKFIGPQARMIRLMGDKIQARRAMAEAGLPVLPGSPEAIESEA
                     EGLKLAREIGYPVIVKASAGGGGRGMRVVRSEEELGHALETASTEAAAAFKDGSVYIE
                     RYVDQPRHIEIQVLADENGECIHLGERECSIQRRHQKLMEEAPSPVLTPELRQTMGEA
                     AVAACKKLGYSSAGTVEFLLDSSGRFYFMEMNTRIQVEHPVTEMVTLADIVRNQIRIA
                     EGEPLGYKQEDMLIVGHAIECRINAENPETFAPSPGTITAFNLPGGPGVRVDTFVYSG
                     YRVSPFYDSMIAKVIVHARTRELAIARMKRALEAMVIEGIKTTIPLHLKIMDDPKFRS
                     GDISTNFMEYFLTKNGRKNGGEAAVGA"
     gene            1525..1803
                     /gene="rplU"
                     /locus_tag="VIJ87_06730"
     CDS             1525..1803
                     /gene="rplU"
                     /locus_tag="VIJ87_06730"
                     /inference="COORDINATES: protein motif:HMM:TIGR00061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HEY5444157.1"
                     /translation="MAHAVIKTGGKQFLVEEGQTLRVPSLAADAGSSVELEALLTTAT
                     EASKISATVVDHGRDQKIVVFKKKRRKQYKRTRGHRQGYTTLKIDSIG"
     gene            1842..2111
                     /gene="rpmA"
                     /locus_tag="VIJ87_06735"
     CDS             1842..2111
                     /gene="rpmA"
                     /locus_tag="VIJ87_06735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001816392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HEY5444158.1"
                     /translation="MAHKKGVGSSRNGRDSHSQRLGLKKFGGERVLGGNIIARQRGTR
                     WKPGNNVGRGKDDTLFALIDGVVKFEDKGRSGKFISVYPMEQAAA"
     gene            2185..3225
                     /gene="obgE"
                     /locus_tag="VIJ87_06740"
     CDS             2185..3225
                     /gene="obgE"
                     /locus_tag="VIJ87_06740"
                     /inference="COORDINATES: protein motif:HMM:NF008954.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HEY5444159.1"
                     /translation="MFIDRAKIYVQGGNGGNGVTAFRREKFVPRGGPSGGDGGRGGDV
                     VFVADVSLNTLLHLRYNPRHIAERGLHGEGSNRSGHTGEDLFVKVPIGTQIFDFETGD
                     LLADLAHDGSQWLAARGGRGGFGNAHFATSTNRAPRYHQEGGKGEERELQLELKLLAD
                     VGLVGFPNAGKSTLISTVSAARPKIADYPFTTLEPNLGVVDLGDFRTFVIADIPGLIQ
                     GAHTGAGLGDRFLRHVERTKLLLHLVDVSSMSGSDTVADYLTVNHELASYNPELAVRP
                     QFVVATKMDALDEEDRLESLRARVAEDGKPFFAISSATGQGVRELVNAIAVTLDELNA
                     ASNKTETVELTL"
BASE COUNT          795 a          751 c          944 g          801 t
ORIGIN      
        1 actgggtgtt ggacgttggc tttttgccaa gagtgttatg tcgtcagcct accgcaaatt
       61 caaaaaaatc ctgatcgcta accgcggtga gatagcctgt aggattattt ggacgtgcaa
      121 agagatgggc atcaagacgg ttgcggttca cagcgatgtt gaccgcgatt cgttgcatgt
      181 cagatttgcg gacgaagctg cgtgtattgg accggctccc tcggcccaga gttacttgaa
      241 tatcccggca attatcagta ctgcggaaat ctttaacgtc gacgcgatcc atcctgggta
      301 cgggttcctt gctgagtctg cttacttcgc cgaaatttgc gaagcgtgca acatcaagtt
      361 cattgggcca caggcgcgga tgatccgttt gatgggggac aagattcagg ctcggcgagc
      421 aatggctgag gcgggattgc ctgtattgcc tggaagtccc gaggctattg aatcggaagc
      481 agaggggttg aaactcgccc gcgagattgg ttacccggta atcgtaaaag catcggcggg
      541 tggtggtggc cgaggcatga gagtagttcg ctcggaagag gaattgggcc atgctcttga
      601 aactgcctca acggaggctg cagccgcgtt caaagatgga agcgtttata tcgagcgcta
      661 cgtcgaccag ccacgtcaca ttgagatcca ggtattggcc gatgagaacg gtgaatgtat
      721 tcatctgggt gaacgtgagt gctctattca aagacgccat cagaagttga tggaagaggc
      781 accgtcgcct gtccttactc cggaactgcg ccagacaatg ggcgaagcgg ctgttgcggc
      841 atgtaagaag ttgggctatt cgagtgccgg aacggtcgag tttctcttgg attcaagtgg
      901 tcgcttctat ttcatggaga tgaatacgcg aattcaggtc gaacatccgg ttactgagat
      961 ggttacctta gcagacattg ttcgcaatca aatcaggatt gccgagggtg aaccacttgg
     1021 ttacaagcaa gaggatatgt tgattgtcgg gcacgcaatc gaatgtcgaa tcaacgcgga
     1081 aaatcctgaa acattcgcac catcgcccgg gacaatcact gcgttcaatt tacctggggg
     1141 gcctggagtt agggtcgata cgtttgtgta ttccggctac cgagtgtcgc cgttttacga
     1201 ttcaatgatt gcgaaggtca tcgttcatgc tcggacgcgt gagctcgcaa ttgcccgaat
     1261 gaaacgagcg ctagaggcaa tggtcattga gggaatcaag acgacaattc cccttcacct
     1321 gaagatcatg gacgatccca agttccgatc aggcgacatt tcgacgaatt tcatggagta
     1381 ttttttgacc aaaaatggtc gaaagaatgg aggggaagca gccgttgggg cgtaggcacc
     1441 ctgtgcggtt gccgtttccg aactggttcc ctataataac cgacttttct atggcgactt
     1501 atcgcgtctg aagaggtaaa tgatatggca catgcagtaa tcaaaaccgg cggaaaacag
     1561 tttttggtgg aagaaggcca gacccttcgg gttccttcac tggcggctga tgccggtagc
     1621 tcagtagaac ttgaggccct tttgaccacg gctactgagg catcaaagat ttcggcgact
     1681 gtggtcgatc atggacgcga ccagaaaatc gttgtcttta agaaaaagcg tcgtaagcag
     1741 tacaaacgta cacgcggtca ccgtcaggga tacacgacac tcaagattga ttcaattggc
     1801 taacgatcag cagttgatta ttaacgtact ggagttcagt tatggcacat aaaaaaggtg
     1861 ttggctcatc tcgaaacgga cgcgactcac actcccagcg gttaggcctc aagaagtttg
     1921 gcggcgaaag agttctcggc ggcaacatca ttgcccggca aagaggcacg cgctggaagc
     1981 cagggaataa tgttggcaga ggtaaagacg acacgctctt tgcactgatt gacggtgtcg
     2041 taaagtttga ggacaagggt cgctccggca aattcattag tgtttacccg atggagcaag
     2101 ctgctgccta gacaactaga ccctggaaat gcgcgacgcc tgagctagca cgctttcgtg
     2161 cgaccgggcg tcgttttgat ttagatgttt attgatcgtg caaagattta cgtccaggga
     2221 ggcaatggcg gtaacggggt taccgcattc agacgtgaaa agtttgtccc tcgaggcggt
     2281 ccttcaggcg gtgatggtgg ccgtggtggc gacgtcgttt tcgtagcgga tgtttcgcta
     2341 aatacactac tgcatctgcg ctataacccg cgccatatcg cggagcgtgg gctacacggc
     2401 gaaggctcga atcgatcagg ccataccggt gaagatttgt ttgtcaaagt tccaatcgga
     2461 actcagatct ttgattttga aacgggagac ttgcttgccg acctcgccca tgacggctct
     2521 caatggttgg ctgcgcgagg aggacgaggc ggatttggta acgctcactt cgccacttcg
     2581 accaaccgcg cacctcgtta ccaccaggaa ggtggtaagg gcgaggaacg tgagcttcag
     2641 ctggaactca aattactggc cgacgtcggt ctggttggtt ttccaaacgc tgggaagtca
     2701 acgctgatct ccacagtttc agcagccagg ccaaagattg cggactatcc gtttactact
     2761 ttggaaccaa acctcggagt tgttgatctc ggggactttc ggacttttgt cattgctgat
     2821 attccaggtt tgattcaggg agcgcataca ggagcgggac tcggtgatcg gtttctgcgg
     2881 catgttgagc gaaccaagtt gttgcttcat ttagtcgacg tctcatcgat gtccgggagc
     2941 gatacggttg cagattatct gaccgtcaat catgagttag cctcctacaa tccagagtta
     3001 gctgttaggc ctcagtttgt ggtggcgacc aagatggatg cactcgatga agaggatcga
     3061 ttggaatccc tgcgagccag ggtagctgaa gatggcaaac cgttctttgc aatctcttct
     3121 gctaccggtc agggtgttcg tgaattagta aatgcaattg cagtgacgct tgatgaactt
     3181 aacgctgcat cgaataagac cgaaacggtt gagttaactt tgtaagagag atgcacgcga
     3241 aacagcgtat cgccctatat ggcgggacat tcgatccggt tcatctggga c
//
LOCUS       DATCGC010000700        10955 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_109555, whole genome shotgun sequence.
ACCESSION   DATCGC010000700 DATCGC010000000
VERSION     DATCGC010000700.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 10955)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10955)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10955
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109555"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..236)
                     /locus_tag="VIJ87_06745"
     CDS             complement(<1..236)
                     /locus_tag="VIJ87_06745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444160.1"
                     /translation="MMSEDQELPEERIMSFEEKLARKRVPRTVTVPLTFDQRVAGAAT
                     IDEEGNLSVVLNQSRVGKQMIRLFHEGYLNELSL"
     gene            complement(233..451)
                     /locus_tag="VIJ87_06750"
     CDS             complement(233..451)
                     /locus_tag="VIJ87_06750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444161.1"
                     /translation="MDPIRHNAFEQPAQNLGTGVIISGDKRVINYHGENYYRACGYPV
                     HGSERCIKREGHFSAIHECMDGTTIPGE"
     gene            complement(454..918)
                     /locus_tag="VIJ87_06755"
     CDS             complement(454..918)
                     /locus_tag="VIJ87_06755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444162.1"
                     /translation="MPKNDDKSFKIEDAELIFRNFSGKAGKYNVDGERNFAVLLPEDV
                     AQQMLADDWNVKWLEPREEGDERRAYISINVKFGYRPPRIVLITGTARQNVTEETVGV
                     LDWANIETADLICRGFFWEVGGKSGWKPYLQSLFVTIEEDDLERKYAINVTE"
     gene            complement(1033..4767)
                     /locus_tag="VIJ87_06760"
     CDS             complement(1033..4767)
                     /locus_tag="VIJ87_06760"
                     /inference="COORDINATES: protein motif:HMM:NF040238.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5906 domain-containing protein"
                     /protein_id="HEY5444163.1"
                     /translation="MDFYQIAVKEKKDGPPEIYPDWTVGRSKDLMVRGRSFYAIWDEK
                     KGLWSTDEYDVQRLVDEDLHRYAEEQYQKYGIMYRVKNLKSFNTTIWTTFRKFMQNIS
                     DNSHTLDEEIIFANAEVSKNDYASRRLDYSLEPGSIAAWNELIDVLYSKEERDKIEWA
                     IGAVVSGDSKKIQKFLVFYGPAGSGKSTVLNIIQKLFDGYVATFDAKALGSSNNAFAT
                     EVFKSNPLVAIQHDGDLSRIDDNTKLNSIISHEMMTMNEKYKPSYSARVNAFLFMGTN
                     QPVRISDAKSGIIRRLIDVHPTGAKIDNDRYHVLLNQIDFELGAIAHHCLTRYRSMGR
                     NYYSAYRPLEMMLQTDIFYNYIEFAFDIMKRQDGISLKQAYELYKEFCAETGIERVLA
                     QYKFREELRNYFDKFEDRAEVDGVAVRSYYSGFKNLTPPSQFVPHEPRSLELIEGHVS
                     IFDEMYPDQLAQYAKPNGDPAKAWSKVSSTLKELDTTKLHWVQVPENHIVIDFDLVNE
                     DGEKDLELNLREASKWPPTYAETSKGGAGLHLHYIYSGDVHELASVFDVGIEIKTLLG
                     NASLRRKLTRCNNLEIATITSGLPKKEKSMITNKSIQSEKGLRELIERNLRKEIHAGT
                     KSSIDFIYKILEDAYEQGMKYDVTDMRARVLGFAAGSTHHGDACLKLVQKMHFASEQP
                     MESPNADDKPLVIFDVEVYPNLLVVCWKYKGSKEVVKMINPTAAEIEPLFGMRLIGFN
                     NRRYDNHILYARFLGYNLEELQRLSQKIIDGKENVLFGEAYNLSYADIYDFSSKKQGL
                     KKFEIELGIHHMELDIPWDQPVPKEKWPQVVSYCENDVVATEAVLEDRMQDFVARQIL
                     AELSGLSINHTTQQHTAKIIFGDEKNPQRVFKYTDLSEQFKGYEFDGKVSTYKGEEVG
                     EGGYVYAEPGIYENVALLDVASMHPTSIELLELFGPYTERYSELKEARMAIKHKDYGR
                     ASGLLGGKLKKFLDSGTDTAEGLSYALKIVINIVYGLTSAKFPNVFRDNRNVDNIVAK
                     RGALFMIDLKNAVQKKGFTVAHIKTDSIKIPNATPEIIQFVTDFGKKYGYEFEHEGTY
                     EKFCLVNDAVYIAREGDKWTAVGAQFQHPYVYKTLFTHEELTFDDYCETKSVTQGTMY
                     LNFKDLTYDPQVPGELHHVGRTGSFVPVKTGGGMLWRIKDDKHYAVTGTKGYLWIERE
                     VAAARKAVNTLDIDMDYFEHLRQEAYNAIDYYGPFETFVS"
     gene            complement(4779..5309)
                     /locus_tag="VIJ87_06765"
     CDS             complement(4779..5309)
                     /locus_tag="VIJ87_06765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444164.1"
                     /translation="MNEPIEEVYFNWLYSKVARVDVPTPSLTYYTLLRSIHSVEFVYV
                     VQGDENRAADGLDIRHEFLAQAHLSQDPNWLNFPCSVFEMMFALARRAEFQTDISARE
                     WFWIFVTNLFGDGDLSDATRHNLKAINDVLDQFLWRTYLPDGRGGMFPLSRTNYDQRK
                     VEIWYQFNEYLVDNEI"
     gene            complement(5312..6010)
                     /locus_tag="VIJ87_06770"
     CDS             complement(5312..6010)
                     /locus_tag="VIJ87_06770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444165.1"
                     /translation="MLQNKWSQIAAVAVVAFAGGSAGGYILGKKRGSVTVVPPMEPGT
                     KQLTIFDEEAQPDPVIEKDHSSELNTEHPPVIKYDEISVSAPETAAMIEDDRITVNVF
                     TNDDGDWDHEVELSQRQSEVPYILHVDEFVENDFDFTQETVTYYAGDDIMVDSHDVPM
                     YGHAGIMGDLRFGHGSKDPSIVYIRNEALQMEWEVILHSGMYSVEILGQEADQEIEEE
                     IRHSNRRPLKFRET"
     gene            complement(6019..6912)
                     /locus_tag="VIJ87_06775"
     CDS             complement(6019..6912)
                     /locus_tag="VIJ87_06775"
                     /inference="COORDINATES: protein motif:HMM:NF040385.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6353 family protein"
                     /protein_id="HEY5444166.1"
                     /translation="MKYIPQGISRKIGDAILTQKKHAPRTMFVLGLAGTITSAVLACR
                     ATLKLPDMLDEMESDIREVKEARSSLTHFNQGTRVQPITDKDVAYAYAINVMRVTKLY
                     APSVVLGAASIGLLTGSHVTLTRRNAGLTAAYATLQTAFESYRDRVRDQLGEDKEKDL
                     YRGVTEETVEIDGKVKKVKTVNPNGLSAYSKLFDESNPNYKPFIDHNRTFIHGVQSYM
                     NHRLTNRGHVFLNEVYEELGFPATPAGCVVGWKMDNPNGGDNFIDFGMYEARNSEFVN
                     GYEMSIWLDFNVDGNMYELIG"
     gene            complement(6927..7565)
                     /locus_tag="VIJ87_06780"
     CDS             complement(6927..7565)
                     /locus_tag="VIJ87_06780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444167.1"
                     /translation="MEEYPSNSKNVLGAKEPKAQKEKKIERVTQAEVVQKQKSMGRRM
                     KDLFVGADFKGVTEYVFGEVLIPALKNMIVDAGSRGLERIFYRGQAPRRYTPVGGSRV
                     TYNSPVQRSYDPRSSPSAMLPGQPPAFNRGGRRDTNEIMFSTRSDADTVLESFSVILD
                     KYEAVSVSDLHDMVGLPASHTDQKWGWTSAVGVSVRQTRDGYVLDLPPAEPL"
     gene            complement(7567..8034)
                     /locus_tag="VIJ87_06785"
     CDS             complement(7567..8034)
                     /locus_tag="VIJ87_06785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444168.1"
                     /translation="MLKQIIKYNDFDGNPQEKAAYFYMSKPEWLKLEYSEKNESFGEM
                     VQRLTNEKDNGKLIEIFEMLLAKAYGVRDGDRFIKSEEQWHEFTQTAAYEALFMELVT
                     DQDKAMAFIIGLLPPELQDNANMEMKTLMLQNKQAVSTLPPPPAPGSPEETGV"
     gene            complement(8098..8292)
                     /locus_tag="VIJ87_06790"
     CDS             complement(8098..8292)
                     /locus_tag="VIJ87_06790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444169.1"
                     /translation="MKTESIEVTEPVEVTNPTLTVVKNAAIGAVVTVAVTVLAQTAVE
                     FATTKVQARRAKKAAAKANQ"
     gene            complement(8577..9320)
                     /locus_tag="VIJ87_06795"
     CDS             complement(8577..9320)
                     /locus_tag="VIJ87_06795"
                     /inference="COORDINATES: protein motif:HMM:NF040385.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6353 family protein"
                     /protein_id="HEY5444170.1"
                     /translation="MQVGVLLRRTQKLAMDNSPVILSGVSISGVITTAYLASRASFSA
                     ARVINRVEHETGTADTVKQRLKERIPLVWKFYIPAAISGAATIACIVGGTKASMTKTA
                     VAYSLLGASEKTFSEYKEKVVEQLGAKKEEAIREEIARDKVRNGPEGIIVTGNGKVLC
                     YESHSGRYFMSDMETLKRAVNEVNAKMLREVDARLSDFYYLVGLPTTQFCERSGWQNS
                     RLLELSFYPVMTEDNQPCIAFDYNYIEPF"
     gene            complement(9642..9884)
                     /locus_tag="VIJ87_06800"
     CDS             complement(9642..9884)
                     /locus_tag="VIJ87_06800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444171.1"
                     /translation="MNQKDQKTLVVAGVLIVVSVVAGSIASKIQDRNHAKRMKALADH
                     RKQMEQLSENTNTVLNYLDRQLETAKFWDIVTRPES"
     gene            complement(9968..10135)
                     /locus_tag="VIJ87_06805"
     CDS             complement(9968..10135)
                     /locus_tag="VIJ87_06805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444172.1"
                     /translation="MFEKLKKQVEENPILAIGVGAAAVTAAAKLIDAITAAQGRHAYA
                     KQINYKISHKK"
     gene            complement(10314..10460)
                     /locus_tag="VIJ87_06810"
     CDS             complement(10314..10460)
                     /locus_tag="VIJ87_06810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444173.1"
                     /translation="MNIIKKAKTAVKVELEIRRNIKRLETAARQGKRIETLADGSYMI
                     IVNS"
     gene            complement(10550..10768)
                     /locus_tag="VIJ87_06815"
     CDS             complement(10550..10768)
                     /locus_tag="VIJ87_06815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444174.1"
                     /translation="MFNRKIEMRVVKADKKAQTPYDQLPADIRLEDTAKIISTHLGEL
                     IKKTGWAVAGYVALDTLRKVAVAYATKQ"
BASE COUNT         2760 a         2712 c         2202 g         3281 t
ORIGIN      
        1 ttcaagctga gctcgttcaa atatccctcg tgaaacaatc gaatcatttg ttttccaact
       61 cttgattgat tgagaacaac tgacagattt ccttcttcat caatcgttgc cgcccctgca
      121 acccgctggt caaaagttaa aggaactgta acagtccttg gaactctctt ccttgctagc
      181 ttttcttcga acgacataat tcgctcttct ggcaactctt gatcttcaga catcactctc
      241 ccggaatagt cgtgccatcc atacattcat gaatggcgct gaaatgtcct tctcgtttga
      301 tgcatcgctc ggatccgtga acaggatatc cgcacgctcg gtaatagttc tcaccatgat
      361 aattgattac tcgcttatca ccactgatga tcacgccagt accaagattc tgagcgggtt
      421 gttcaaaagc gttgtgtcgg attggatcca tgattactcc gtcacattga tggcgtactt
      481 gcgctccaaa tcgtcttcct cgatggtgac gaacagtgat tgcaaatatg gcttccaacc
      541 actcttacca ccaacttccc agaagaatcc acgacagatc aaatctgcag tctcgatgtt
      601 agcccagtcc aaaacaccaa ctgtctcctc tgtgacattc tgtcgagctg ttcctgtgat
      661 caaaacaata cgaggaggcc tatagccaaa cttaacattg attgaaatat aagcacgacg
      721 ctcatcaccc tcttcacgag gctcgagcca cttgacgttc caatcgtctg caagcatctg
      781 ttgagcaacg tcttccggca acaggaccgc aaaattgcgt tctccatcca cattatactt
      841 cccagcttta cccgagaagt ttcggaagat caattcggcg tcctcaatct taaaggactt
      901 gtcatcattt tttggcatta tagctccttc taaaaaaaag aaagaatgat agcccttgtt
      961 taaggggcta ccatcctcga gacagtacgg gacggggtgt acttctcata acataacatg
     1021 taatttttgc gattaggaaa cgaacgtttc aaacggacca taatagtcga ttgcgttata
     1081 tgcttcctgt cgcaaatgct cgaaataatc catatcgata tcgagcgtgt ttacagcctt
     1141 cctagctgca gcaacctccc tttcaatcca caaatatcct ttggttcctg ttactgcgta
     1201 atgcttgtcg tctttgattc tccacagcat ccctccaccg gttttcaccg gtacaaaaga
     1261 tcctgtcctt cccacatggt gaagctcccc gggaacttgg ggatcgtacg tgagatcttt
     1321 gaaattgaga tacatcgtac cctgagtaac acttttcgtc tcacaataat catcgaatgt
     1381 gagttcttcg tgcgtgaaga gggtcttata aacgtaaggg tgctggaatt gagcgcccac
     1441 tgccgtccac ttgtctcctt cacgagcaat atataccgca tcgttaacga gacagaactt
     1501 ttcataagtg ccctcatgct caaattcgta tccatatttc ttaccgaaat ccgtgacaaa
     1561 ctgaatgatc tccggcgtgg cgttcgggat cttaatggaa tcggttttga tgtgtgcaac
     1621 ggtaaatcct ttcttttgca ctgcgttctt caagtcgatc atgaacaaag caccacgctt
     1681 cgctacaatg ttgtctacgt ttcgattatc tcggaaaacg ttggggaatt tggcactggt
     1741 gagtccgtag acgatgttga tgacgatttt gagagcataa gatagcccct cagcagtgtc
     1801 cgtaccgctg tccagaaact tcttgagctt accgccaagt aggcctgacg ctctcccgta
     1861 gtccttatgc ttaattgcca ttctcgcttc tttgagctcg gaatagcgtt ctgtataggg
     1921 tccaaacaat tcgagaagct cgatactcgt cggatgcatg gatgcaacgt ccagaagcgc
     1981 cacgttctcg taaataccgg gttctgcgta gacgtatcca ccctcaccga cttcttcgcc
     2041 tttataggta ctaacctttc catcaaattc gtatcctttg aattgttccg acagatcagt
     2101 atacttgaat accctctgag gattcttttc atccccaaat atgatcttcg cagtatgctg
     2161 ttgtgtcgtg tgattaatgg acaaacctga aagttctgca agaatctgtc gagcaacaaa
     2221 gtcttgcata cgatcttcaa gaaccgcttc tgttgcaacc acatcgtttt cacaatatga
     2281 cacaacttgt ggccacttct cctttggcac tggttgatcc caaggaatat ccaattccat
     2341 gtgatgaatg ccgagctcaa tctcgaattt cttcaaccct tgtttcttgg agctaaagtc
     2401 ataaatatca gcgtaagaca aattgtaggc ctctccaaag agtacattct ccttgccatc
     2461 aatgatcttt tgacttaatc tctgcagttc ctcaagattg taaccgagga aacgagcgta
     2521 cagaatatga ttatcgtaac gtcgattatt gaaaccaatc agtcgcatac caaacaacgg
     2581 ttcaatttca gcagctgttg ggttgatcat tttgacaact tctttggatc ctttgtactt
     2641 ccaacataca actagaagat ttgggtaaac ctcgacgtca aatatgacca atggtttgtc
     2701 gtccgcattc ggactttcca tcggttgttc gctggcaaag tgcatcttct gaaccaactt
     2761 gagacatgcg tcgccgtggt gtgtgcttcc cgcagcaaac cccaaaactc tagctcgcat
     2821 atcagtcacg tcgtatttca tgccctgttc ataagcgtct tccagaatct tgtaaatgaa
     2881 atcgattgag gactttgtgc ctgcatgaat ttctttacgc agattacgtt caatgagttc
     2941 tcgaagacct ttttcgctct gaatactctt gttagtgatc atcgatttct ctttctttgg
     3001 cagaccactc gtgatcgttg caatctcgag attattacat ctggtcaatt tcctccggag
     3061 agaagcatta ccaagcaatg ttttgatctc gataccaacg tcaaacacgg aagcaagctc
     3121 gtgcacatcg ccggagtaaa tatagtgtaa gtgtagacct gcaccgccct tactcgtctc
     3181 ggcatatgtt ggtggccatt tcgacgcttc tctcagattt aattctagat ctttttcacc
     3241 atcctcgtta accaaatcga agtcgatgac aatatgattc tcaggtactt gtacccaatg
     3301 caacttcgta gtgtcaagtt ctttcagtgt cgaacttact tttgaccacg cctttgcagg
     3361 atcaccattt ggtttagcgt actgcgccag ttgatccgga tacatctcgt caaatataga
     3421 tacgtgtcct tcaatcaact caagtgatcg tggttcgtgc ggaacaaact gactcggtgg
     3481 tgtcaagttc ttgaatcctg aataataact acgtactgcc acaccatcca cctccgctct
     3541 gtcttcaaat ttatcgaagt agttcctaag ttcttctcgg aacttgtact gagctagaac
     3601 tctctcaatg ccggtttccg cacagaattc cttgtacagt tcatacgcct gcttcaagga
     3661 tatgccatcc tgacgcttca tgatgtcaaa tgcaaactcg atgtagttat agaatatgtc
     3721 tgtctgcaac atcatttcta acggtcgata agcactgtag taattgcggc ccatagagcg
     3781 atagcgagta agacagtgat gggcaatagc tccgagctcg aaatcgatct gattgagaag
     3841 tacgtgatag cgatcattat caatctttgc gccagtagga tgtacatcaa taagcctacg
     3901 aataatacca ctcttagcat cagaaatcct tactggttga ttagtgccca tgaataagaa
     3961 agcattcact cgagcactgt agctcggctt gtacttctcg ttcatagtca tcatttcgtg
     4021 agatatgatc gaattcagct ttgtgttgtc gtcgattctc gacaaatcac catcgtgttg
     4081 aatagctaca agcggatttg acttgaacac ttcggtagca aatgcattat tactgcttcc
     4141 gagtgccttg gcgtcgaacg ttgctacgta gccgtcgaac aatttctgga tgatatttag
     4201 aaccgtactc ttcccactgc cggccggtcc atagaatact agaaactttt ggatcttttt
     4261 tgaatctccc gaaacgacgg cgccaatagc ccattcgatc ttatcccttt cttccttgga
     4321 atatagaacg tcaatcagtt cgttccatgc tgcaatgctg ccaggctcca ggctgtaatc
     4381 caagcgacga cttgcgtaat cgttcttact aacctcagca ttagcaaata taatctcctc
     4441 atcaagagta tgactgttat cgctaatgtt ctgcatgaac tttctgaatg ttgtccaaat
     4501 tgtagtattg aatgacttca ggttcttaac ccgatacatt attccatact tttgatactg
     4561 ttcttcggca taacgatgaa gatcttcatc aacgagtctt tgtacgtcat actcatcagt
     4621 tgaccacaag cccttttttt catcccaaat tgcatagaat gatcgccctc gtaccatcaa
     4681 atctttagat ctaccgactg tccaatctgg gtaaatctct ggaggtccgt ctttcttttc
     4741 tttaacagca atttgataaa agtccacgtg acctcctttc agatttcgtt atcgacgagg
     4801 tattcgttga attgatacca gatctccacc tttctctgat cgtagttggt tctagacaat
     4861 ggaaacattc ctccacgccc gtcgggcaaa tatgttctcc acaagaattg atccaaaacg
     4921 tcgtttattg ctttaagatt atgacgtgtt gcatcactta gatctccgtc gccgaataaa
     4981 ttggtaacaa agatccaaaa ccattcccta gctgaaatat ccgtctgaaa ctctgctctc
     5041 cgagccaacg caaacatcat ttcgaagacg gaacatggaa agttcagcca attaggatct
     5101 tgtgataagt gtgcctgtgc gagaaactcg tgacggatgt ccaacccatc tgctgctcta
     5161 ttttcatcac cttgtacaac atacacaaat tccaccgagt gtatgcttct tagcaatgtg
     5221 taataggtca gagatggagt tggtacatcc acacgagcca cctttgagta gagccagttg
     5281 aaatatactt cttcaatcgg ctcattcatg tctaggtctc ccggaacttc agaggcctcc
     5341 gattggaatg cctaatttcc tcttcaattt cctggtcagc ttcctgcccc aaaatttcaa
     5401 cagaatacat gccagaatga agaataactt cccactccat ttgaagggcc tcgttacgaa
     5461 tatagacgat cgacggatct ttcgaaccat gtccgaacct caaatctccc attatgcctg
     5521 cgtggccata catgggaaca tcatgactgt ccaccataat gtcgtcacca gcataataag
     5581 taactgtttc ctgagtaaag tcgaaatcgt tttccacgaa ctcgtctaca tgaagaatat
     5641 aaggcacttc gctttggcgt tgactcagct caacttcatg atcccagtct ccgtcatcgt
     5701 tggtgaaaac gttgaccgta atacgatcgt cttcaatcat tgctgccgtt tccggagctg
     5761 aaactgaaat ctcgtcgtat ttaatgaccg gaggatgctc tgtattgagc tcgctggaat
     5821 gatccttttc gattaccgga tctggttgag cttcttcatc aaatatagtc aattgctttg
     5881 tacctggttc catcggagga acgaccgtaa ccgatcctcg cttcttgcca agaatatagc
     5941 cacctgcact accgccggcg aaagcgacga cagctacagc agcgatttgg gaccacttgt
     6001 tctgtagcat gtcatctcct aaccgatcaa ttcgtacatg ttgccatcaa cattgaaatc
     6061 aagccaaatg ctcatctcat atccgttgac gaactcgcta ttacgggctt cgtacatgcc
     6121 gaagtcaatg aaattgtcac cgccgttagg attgtccatc ttccaaccaa ctacacagcc
     6181 ggctggcgtt gctgggaatc caagctcttc gtacacctca ttgaggaata cgtgtccacg
     6241 attagtgaga cgatgattca tgtagctctg cacaccatga atgaacgttc gattgtgatc
     6301 aatgaacggc ttgtaattcg gattggactc gtcgaacaac ttggaatatg ctgacaaccc
     6361 attcggattg acggtcttaa ccttcttgac ttttccgtca atttcgactg tctcttccgt
     6421 gactcctcga taaagatcct tttccttgtc ttcaccaagt tgatcacgaa ctcgatcacg
     6481 ataactctca aacgctgttt gcaacgtagc atacgcagca gtcaatccag cgtttcgtcg
     6541 agtcaacgta acatgcgagc ctgtcaacaa tccaattgat gccgcaccca gaacaactga
     6601 aggcgcatac aattttgtca ctcgcattac attgattgca taagcatatg caacatcttt
     6661 atcagtgatc ggttgaaccc gagttccctg attgaaatgg gtcaaagagc ttcgagcttc
     6721 cttcacttct cgaatatcgc tctccatctc atcgagcatg tcaggcaact tgagggtcgc
     6781 acgacacgcc agaacggcgc tagtgatggt acccgccaaa cccaacacaa acattgttct
     6841 cggtgcgtgc tttttttgtg tgagaatcgc atcgccgatc tttcggctga ttccctgtgg
     6901 aatatacttc atttttgact cctatgtcag agtggttctg cgggtggtag atcgagaacg
     6961 tatccgtctc gtgtctgtcg gactgaaact cctactgcgg aagtccagcc ccatttctga
     7021 tctgtgtgtg atgctggcaa gccaaccatg tcatgcaagt ctgacacaga tactgcttcg
     7081 tacttgtcca gaataacgct gaagctttca agcaccgtgt ctgcatccga acgagtagaa
     7141 aacatgattt cgttagtgtc tcttcgaccg cctcgattaa acgccggagg ttgtccaggc
     7201 agcatcgctg atggagaaga cctagggtcg tagcttcgct gcactggtga gttatatgtc
     7261 actcgagacc caccaactgg tgtataccgt cgaggtgctt gccctctata aaagattcgc
     7321 tcaagtccac gagatcctgc atctacaatc atgtttttca atgctggaat aagaacttca
     7381 ccgaacacgt actcggtaac acctttgaaa tcggctccaa caaacagatc tttcatgcgt
     7441 cgacccatcg acttctgttt ctggacaact tctgcttgtg taactcgttc aatcttcttt
     7501 tctttttgag ccttaggctc tttggccccg aggacgtttt tactattact cggatattct
     7561 tccatatcaa acccctgttt cttcgggtga tcctggtgct ggcggaggcg gcaaagttga
     7621 aacagcttgt ttattctgca gcatcaacgt cttcatttcc atgtttgcgt tgtcttgcaa
     7681 ctcaggagga agcagtccaa taatgaaagc catcgcttta tcttgatctg ttaccaactc
     7741 catgaacaac gcttcgtatg ctgcagtttg cgtaaactcg tgccattgtt cttcggactt
     7801 gataaatcga tcaccatctc gaacgccgta tgcttttgca agcagcattt cgaaaatttc
     7861 gatcaattta ccattatctt tttcgttggt aagtctttga accatttccc caaaggattc
     7921 gtttttctca ctgtactcca gcttcaacca ttctggcttg gacatataga aatatgccgc
     7981 tttttcttgt ggattaccat cgaagtcgtt atacttgata atctgcttga gcatcttgtt
     8041 ccttttcctt aaaattgggc aaaagctaaa tcccttgtag gggacttagc tcatttatta
     8101 ctgattggct tttgcggcgg ccttcttcgc tcggcgtgcc tggaccttgg tggtcgcaaa
     8161 ctcgacggcg gtctgtgcca gaacggtcac tgcaactgta acaacagctc caatggcggc
     8221 attcttgaca acagtcagcg tcgggttcgt gacttccacg ggctcggtga cttcgattga
     8281 ttcggtcttc attgtaaaaa ctccttatca ggtttggctt cattacacca tgtgtaaatt
     8341 ttgcgattag tcatgtatga tgtaatacat cactttctcg taagggacat taattatttg
     8401 agtgcggtat ttacagcgaa gagccaaggg tggtcccatc gctgtcatcc acaaatcgat
     8461 tacttctatt tttctcagag ctttgctatt gtttaaatac aacgtgagga ctgacccctt
     8521 ccagtcctcg tacgttgcaa gcggcttact tgaatctgat gttggcatag cctctcctag
     8581 aacggttcga tatagttata gtcgaaggcg atacacggtt gattgtcttc tgtcattacc
     8641 ggatagaaac tcaactccag caatctggaa ttttgccatc cagatctctc acaaaactgt
     8701 gtcgttggca atccaacaag ataatagaaa tcacttaggc gagcatccac ctcacgaagc
     8761 atctttgcat tgacttcgtt gactgctcgt ttcagcgttt ccatgtcgct catgaaatat
     8821 cgtccgctgt gcgactcgta acacaacact ttaccgtttc cagtaactat gatgccttcc
     8881 ggtccattgc gaactttatc tcgagcgatc tcttctcgaa ttgcttcctc tttttttgct
     8941 ccgagttgtt ctacgacctt ctctttgtat tcgctgaacg tcttctcact agcaccaagc
     9001 agggaatatg ctacggcggt cttcgtcatt gatgcttttg tccctccaac aatgcaggca
     9061 attgtcgcag caccagaaat tgctgctgga atataaaact tccagaccag tggaatcctc
     9121 tccttcaacc gttgtttaac ggtgtctgct gtaccggttt catgctcgac tctattgata
     9181 acacgagccg cactaaacga tgctcttgat gccaaatatg cagtcgttat tacaccactg
     9241 atactgacac cactcaaaat caccggcgaa ttatccattg ccagtttctg cgtcctccga
     9301 agtagtacgc ctacctgcat cggttcttcc tcatctctcg tacgaatatc caaatcaacc
     9361 aaaagccaca agtaacacag atcatgattc catcaaccag aaagttgaaa aatccgtatt
     9421 gcttgttaca gcaacatcca tagggattac aattacacat tattcactcc tttcaaaggc
     9481 aaaaatgatg tgagaagtaa aggtccatcg cccatcgaaa acggtggtcc agataggtag
     9541 ccacttcatg tggggctaca ccttcgtgtc ttatctcttc tcataacatg ctgtgttaat
     9601 tttgcgaaaa cctaaatccc ttgtaggatc taggctttta attaactttc gggtcgggta
     9661 acaatatccc aaaacttcgc agtttcaagc tgtcggtcca gataattcag aactgtattc
     9721 gtgttttcgc tcagttgttc catctgcttg cgatgatccg caagggcttt catgcgcttt
     9781 gcgtgattgc gatcttggat cttgcttgcg atggaaccgg cgacaacgga tacaacaatg
     9841 agaactccgg caacgactag cgttttttgg tctttttggt tcattatgtt tcctttcgta
     9901 ggtcttcata atataccatg ttaaaaatgc gaaaacctaa atcccttgta ggatctaggc
     9961 ttagagttca cttcttgtgg ctgatcttgt agttgatctg cttggcgtag gcgtggcgac
    10021 cctgtgcggc ggtaatagcg tcaatgagtt tggcagcagc ggtaactgca gcggctccga
    10081 caccaattgc caggatggga ttctcctcga cctgcttctt cagcttctcg aacattatgg
    10141 tttcctttcg gtagatctct ctattataag acctgttaaa agtgcgaaaa attaaatgag
    10201 aggttaacat tgcgttaacg gcctaacatt aagcctgtta ggtttctctc ataacaacac
    10261 gtgtaatttt tgcgaaaagc taaattcctt gtagaatcta gccttttgat ttctcaacta
    10321 ttgacgatga tcatgtatga tccatcggcg agggtttcga ttcgctttcc ttggcgagcg
    10381 gcggtctcca gtcgcttgat gttgcgacgg atctcgagct caaccttgac agcggtcttg
    10441 gccttcttga tgatgttcat tatagattat tctccttagt agggtctcta taataggcca
    10501 tgtaaatttt gcgaaaacct aaatcccttg taggatctag gctttgagtt cattgcttag
    10561 tggcgtatgc caccgcaact ttgcggaggg tgtcgagggc gacgtagccg gcaaccgccc
    10621 aaccagtctt cttgatcaac tccccaaggt gcgtgctaat gatcttagca gtatcctcga
    10681 gtcgaatatc agcgggcaac tggtcgtacg gtgtttgggc ctttttgtcg gctttgacaa
    10741 ctctcatctc aattttgcgg ttaaacatta tatgctcctt tgtagatgac tctcattata
    10801 tgcgctgtta aatttgcgat agttgagcgg aaattctccc ccgggatttt tttgagatcg
    10861 aaaaattaca atccgtgtaa atatggcgaa aacctataga gcatgtaatt tcttacacac
    10921 cctataggtt ctcaccacga ttagttggtg atgtc
//
LOCUS       DATCGC010000701         1725 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_109575, whole genome shotgun sequence.
ACCESSION   DATCGC010000701 DATCGC010000000
VERSION     DATCGC010000701.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1725)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1725)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1725
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109575"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1109
                     /locus_tag="VIJ87_06820"
     CDS             <1..1109
                     /locus_tag="VIJ87_06820"
                     /inference="COORDINATES: protein motif:HMM:NF024863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GDSL-type esterase/lipase family protein"
                     /protein_id="HEY5444175.1"
                     /translation="RRVGKLLLKASYVVFLLLFIEAISVLGFYVKTRRWTFQEQDNFA
                     RSMFEARPYMIGAGKPDAQITRNGIRYTHNSAGFRGKDFPTKSQKIRIVTIGGSTTYG
                     VGVSDDDTWPAQLEHQLGNNYEVFNLGVPGHSTAEHIAMLSLTLPEYQPDILIMNVGL
                     NDLRNLHVKNLKSDYSNYHAPMLFNSYGFCSASPLDRFASGKLAIWLLREIHVLRPCA
                     FADYELEQDSSHDNEEMTKRIYVRNLETLMAIAKYQGLKPILVPQVLVKERFQGGRLK
                     WWIPLIEDDQLIGYLNAYNSLTEEVATKEGLVFVREISEQTWTASDFVDPSHLSPDGN
                     RKFAAILQRAVSNIKEQDYRTVAGKPSSISSQMR"
     gene            1173..1721
                     /locus_tag="VIJ87_06825"
     CDS             1173..1721
                     /locus_tag="VIJ87_06825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444176.1"
                     /translation="MTRITFNLLLLTLGLLTVSSAAAQTRQSVYTNLDDKRCRTLKSD
                     ASEAGEYLGRCTGIAGYTLLIEEGDLRQNITVVTPRKVEHSLELWSVVSSAFSSVGDR
                     AEWRVTKLRNKTTPVALIVRYNASEDSENPDKTTSYLVVTKITSKEICVTDRIPPGPK
                     ANEDARRLADESATKPCLSEKH"
BASE COUNT          463 a          410 c          419 g          433 t
ORIGIN      
        1 agcgtcgggt aggaaaactc ttgttgaaag cctcttatgt cgtgtttctt ttgctattta
       61 tcgaggctat ttcagtcctt gggttttatg tgaagactcg tcgctggacg tttcaagagc
      121 aggacaattt cgcccgatcg atgtttgaag ctcggccata catgattggt gccggaaagc
      181 cagatgccca gattacgcga aacgggattc gctacactca caactcggct gggtttcgag
      241 gcaaagactt tccaacgaag agtcaaaaga ttcggattgt cacaataggt ggatcgacga
      301 cttatggagt tggagtcagc gatgacgaca cctggcccgc tcaactcgag catcaactag
      361 gcaacaacta tgaggtcttc aacctgggtg tcccgggtca cagtactgcc gaacatattg
      421 cgatgttgtc cctcacctta ccggagtacc aaccagacat tctcatcatg aatgttggtt
      481 tgaatgacct tcggaacctt cacgttaaaa acttgaagtc ggattattca aactatcatg
      541 cgccaatgct ttttaactct tatggatttt gttctgcgag tccgctcgac cgttttgctt
      601 ctggaaagct ggcgatctgg ttacttcgcg agatccatgt attgcgaccc tgcgcttttg
      661 ccgactatga gttggaacag gactcaagtc acgacaacga ggagatgact aagcgcattt
      721 acgttcgtaa cctggaaact ctaatggcaa tcgcgaaata ccagggactc aagccaatcc
      781 ttgttcccca ggtactggtt aaagagagat ttcagggcgg aagattgaaa tggtggattc
      841 ctttgattga ggacgatcaa ttgatcggct acttgaatgc ctataattcg ttaaccgaag
      901 aagtagcaac gaaagaaggt ctagtttttg tacgtgagat ctcagagcag acttggaccg
      961 catctgattt cgttgacccg agtcatctga gtcctgatgg caatcgtaaa ttcgccgcca
     1021 ttctgcaaag agctgtttcc aatatcaagg aacaggatta tcgtactgtc gccggcaaac
     1081 cgagtagcat ctcgtctcaa atgaggtaaa gctgcgagta cactttgtct agcaagcgcg
     1141 aaggaaatct taatttagcg aggttacacc ctttgacccg cataacattt aatctgctgt
     1201 tgctgactct cgggctgtta actgttagtt ccgctgcagc tcaaacgcga caaagtgttt
     1261 acacaaacct cgacgataaa cgttgtcgca ctctcaagtc cgatgcatct gaagctggag
     1321 aatatctcgg acgttgcact ggaatcgcag gctacacact cttaattgaa gaaggtgatt
     1381 tacgtcagaa catcacagtt gtcacacctc gtaaggtcga gcactcactt gaactgtgga
     1441 gtgttgtgag ctccgcattc tccagcgtcg gcgacagggc cgaatggcgc gtcacaaagc
     1501 tgaggaataa gacgactccg gtggcgctga ttgtgagata caacgccagc gaagatagcg
     1561 aaaacccaga caagacaacg tcgtatctcg tcgtgactaa gatcacttcc aaagagatct
     1621 gtgtaacaga cagaattccg cccgggccaa aggccaacga agatgcacgt cgcttggctg
     1681 acgaatcagc aaccaaacct tgcctgtcgg aaaaacacta agtcc
//
LOCUS       DATCGC010000702         1498 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_79210, whole genome shotgun sequence.
ACCESSION   DATCGC010000702 DATCGC010000000
VERSION     DATCGC010000702.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1498)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1498)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1498
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79210"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1017
                     /locus_tag="VIJ87_06830"
     CDS             <1..1017
                     /locus_tag="VIJ87_06830"
                     /inference="COORDINATES: protein motif:HMM:NF021635.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-pyruvoyl-tetrahydropterin synthase-related
                     protein"
                     /protein_id="HEY5444177.1"
                     /translation="ASLLAEFAACSVLPFTLWFVERTCQKQSATNIAGLAITYALLIL
                     THLPLTVLGSLALLVYALCRLRPDNWKRTLPALTSAVLLGLLLSSFYWVTMIAEKNWI
                     RADQVQRESSVDYRLNFLFSTFSPDNLNVWWMNILMFSSALMFAPALILLWKRYRQGV
                     NNQLRTVLILVTFAIVMATQLTLPIWNRVKPLQETQFPWRWLAVVSIVGPLLVAVSLP
                     AWFEVARSKMRPLFLIAMAGMLVSLTFSLSHIVREAKFLPAPEFASTLASIRGSEGVG
                     QWLPVMAQEHVKEISGDIELAGRQFETVLKSPEKRVFSVAAGTAGDARVRTYYYPHWR
                     ASAG"
     gene            complement(1014..1298)
                     /locus_tag="VIJ87_06835"
     CDS             complement(1014..1298)
                     /locus_tag="VIJ87_06835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444178.1"
                     /translation="MADLDSGSFAVADGQDSSRGSGCPSAIPTRRDTEYLRRPPKKIR
                     LAAINNPAIEMIAEIRVRCGSTNSTVIVVASEGTLTSRTPSSVGRTASFS"
     gene            1316..>1498
                     /locus_tag="VIJ87_06840"
     CDS             1316..>1498
                     /locus_tag="VIJ87_06840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444179.1"
                     /translation="MKATENELIDARYHKSPVGFVRSFIFGINDKKAVLILFGFAALL
                     MLPIAVWGIPEGADLPN"
BASE COUNT          315 a          407 c          392 g          384 t
ORIGIN      
        1 gcctcgttgc tagcggagtt tgcggcctgt tctgttctac cgttcacgct ttggtttgtt
       61 gagcgaacat gtcagaaaca atccgctacc aacatcgccg gactcgctat tacctatgca
      121 ctcctgatcc tgacccatct accactcacg gtgctgggtt cgttggcgtt gctcgtctat
      181 gcgctgtgca gactgcggcc tgacaactgg aaacggacac tgcccgcgct gacatctgcc
      241 gtcttactag gactgttatt gagttcgttt tactgggtga cgatgatcgc agagaagaat
      301 tggattcgag ccgatcaagt ccaacgtgag tcgtcggttg attaccgcct gaactttttg
      361 ttttcgactt tctctcctga caatctcaac gtttggtgga tgaacattct gatgttttca
      421 tccgctctta tgtttgcgcc tgcgctcatt cttctctgga aacgatacag acaaggagtg
      481 aacaaccaac tgcgcacggt cctgatattg gtcacttttg ctatcgtaat ggcgacacag
      541 ctgacgcttc caatctggaa ccgggtcaag ccgctccagg aaacgcagtt tccctggcgc
      601 tggctcgccg ttgtgtcgat cgtgggacca ttgctggtgg cagtttccct tccagcgtgg
      661 ttcgaagtcg cacgcagcaa gatgcggcca ctgtttttga tcgcgatggc cggaatgctc
      721 gtgtcactca ccttctcgct ctcgcatatt gttcgcgagg caaagtttct tccagcaccg
      781 gagttcgctt ctaccttagc gtcaattcga ggttcagaag gcgtgggcca gtggctaccg
      841 gtaatggccc aggaacatgt caaagagatc agcggcgata tcgaactcgc gggccggcaa
      901 tttgaaaccg tcttgaaatc ccctgagaag cgcgtctttt cggtcgccgc agggacggct
      961 ggagacgcac gcgtacggac ttattactat ccgcattggc gcgcctccgc tggttaagaa
     1021 aaactcgcgg tccgtccgac agatgatggt gtcctgctcg tgagtgtgcc ttcggaagca
     1081 acgacgatca cggtagagtt cgtcgagcca caacgaacac gaatctcagc gatcatctct
     1141 atggctgggt tattaatcgc cgcgagtctg atcttcttcg gcgggcgacg caagtattca
     1201 gtatcccgac gcgtcgggat agcggatggg caacctgaac cgcggcttga atcctgacca
     1261 tccgccaccg cgaatgatcc tgaatccaag tccgccatcc cacaaactct ctgaagtgaa
     1321 agctacagaa aacgaattga ttgacgctcg ttatcacaaa tcgcctgttg gattcgtgcg
     1381 tagcttcatt ttcggaatca acgacaaaaa agctgtgctg atactttttg gattcgcggc
     1441 actgttgatg ttaccgattg cggtctgggg cattcccgaa ggcgctgacc tgccaaat
//
LOCUS       DATCGC010000703         1172 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_342391, whole genome shotgun sequence.
ACCESSION   DATCGC010000703 DATCGC010000000
VERSION     DATCGC010000703.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1172)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1172
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_342391"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..240
                     /locus_tag="VIJ87_06845"
     CDS             <1..240
                     /locus_tag="VIJ87_06845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444180.1"
                     /translation="ILRAVQTVSQLGLQSVSYSCDFVDLFSQSGTGDPRNHTRNHTNE
                     IPRQISVLTQSLPWVVLDFDVEARSFSHSHRANAR"
     gene            complement(263..>1172)
                     /locus_tag="VIJ87_06850"
     CDS             complement(263..>1172)
                     /locus_tag="VIJ87_06850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444181.1"
                     /translation="YGAPRQLDRSVSVFDIKHNLTSTFVWDLPFGKRGAYFSNAPKVV
                     DGIIGGWSLSGVIRFQGGQPFTPFITDTNRLGGVNRSVRMNIIPGVPLKNPLYSKSCT
                     VGAGCEPYINPAAFMRPPKGTLGSSSRTLDVRAPMQQYFDLSVQKSFGLPFIGDEGRR
                     KLNFRVDLINALNHPTFRYNNTGNTPFGFGTLPNEGDLVANDLTSWLAANPGQTATLA
                     QVNAILASQRGPVFPGQTVGPLPLNFFSVPVPEGFATRTANSFDIRTLDGLKLYRLRQ
                     TYDANFGTLFANNNPRYIQFGVRIFF"
BASE COUNT          305 a          294 c          310 g          263 t
ORIGIN      
        1 attctgaggg ctgtgcagac tgtgtcacaa ctcggattac agtcggtttc ttattcgtgt
       61 gatttcgtgg atctcttttc tcaaagcgga acaggcgatc cacgaaatca cacacgaaat
      121 cacaccaacg aaatcccaag acaaattagt gttttgacac agtcgctgcc gtgggtggtg
      181 ttggactttg atgttgaggc tcgttctttc agtcattctc accgggctaa tgcccggtga
      241 gaatgagaag agaacaaggt gattagaaga aaatcctgac gccaaattgg atgtagcgtg
      301 gattgttgtt tgcgaagaga gttccaaagt ttgcgtcgta agtctggcgc aaacgataga
      361 gcttcaaacc gtccagggtt cggatatcga aggagtttgc cgttctggtt gcaaagccct
      421 cgggcaccgg cacgctgaag aagttcaaag gcaaggggcc aaccgtttga cctggaaaaa
      481 ctgggccccg ctgacttgcg agtatcgcat tgacctgggc caacgttgcc gtctgaccag
      541 gattcgccgc caaccacgaa gtcaaatcat ttgcaaccaa gtccccttca ttaggtaacg
      601 tgccaaaacc aaacggagtg ttacccgtat tgttgtagcg gaacgttgga tgattcagcg
      661 cattgatcag gtcgaccctg aagttgagct tgcgtcgtcc ttcgtcgccg atgaaaggca
      721 aaccaaaact cttctgaacc gacagatcaa aatactgctg catcggcgca cgaacatcca
      781 gagtccgaga cgaactgccg agagtacctt tcggcggacg catgaacgca gctggattga
      841 tgtatggctc gcaaccagcg ccgacagtgc agctctttga atacaacggg ttcttgagcg
      901 gcacaccggg gatgatgttc atgcggactg aacgattaac accgcccagg cggttggtat
      961 cggtaataaa aggtgtgaac ggctgtccac cctggaaacg aatcacgccc gatagcgacc
     1021 atccgccgat aatcccatca acaacctttg gcgcattgct gaaataggca cctctctttc
     1081 cgaatggcag atcccaaacg aacgtcgagg tcaaattgtg cttgatatcg aagaccgaaa
     1141 cggaccgatc tagctggcgc ggtgcaccgt ag
//
LOCUS       DATCGC010000704         2236 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_109644, whole genome shotgun sequence.
ACCESSION   DATCGC010000704 DATCGC010000000
VERSION     DATCGC010000704.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2236)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2236)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2236
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109644"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            63..359
                     /locus_tag="VIJ87_06855"
     CDS             63..359
                     /locus_tag="VIJ87_06855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444182.1"
                     /translation="MKARNKWLLGGFAIAVGAVGTAAAYWKKKSMRVVPKPEKNAADV
                     WARPGMLVTFRAELMPGRDRHSRTFRVKQLLPSGRVSLHDVDGEHTETEFEHVS"
     gene            complement(376..1152)
                     /locus_tag="VIJ87_06860"
     CDS             complement(376..1152)
                     /locus_tag="VIJ87_06860"
                     /EC_number="3.1.4.17"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004114 - 3',5'-cyclic-nucleotide
                     phosphodiesterase activity [Evidence IEA];
                     GO_function: GO:0008081 - phosphoric diester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3',5'-cyclic-nucleotide phosphodiesterase"
                     /protein_id="HEY5444183.1"
                     /translation="MKIQLLPSTFDAQGHANLEQRLTCFLIDDCVAIDAGSIAIALSA
                     EQRSKVRDIVVTHPHMDHIASLPIFIDDLYPTLRQPMRIHATREVIGLLERDVFNWNV
                     YPRFSDLKNDFGPVMEYIPIPENGKFSVAHLNVVAVPVNHIVPTVGLLVSDGKSSVAF
                     SSDTAETDAFWKVVNDTKHLDALLIEASFPDEMAQLAEVSRHFTPSSLGKELKKLTHN
                     GMDILAVHLKPTHRDTIIRQLQALNIPKLSVMNPGEIYNW"
     gene            complement(1248..>2236)
                     /locus_tag="VIJ87_06865"
     CDS             complement(1248..>2236)
                     /locus_tag="VIJ87_06865"
                     /inference="COORDINATES: protein motif:HMM:NF024760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PrsW family intramembrane metalloprotease"
                     /protein_id="HEY5444184.1"
                     /translation="GLVAATIPVPLYVILVIWIDRYESEPMWMLATAFCWGAFVATFF
                     AFILNTGGQLAVAELAGDKNAGELFALVISAPIVEESGKAAILFLFFFFKKDEFDGVI
                     DGIVYASLVALGFAMVENIHYYGNAALQGGGQLTLILFIRGALAPFSHPLFTSMTGIG
                     LGLARQTNNLAIKLTTPLVGFLMAMCMHSIWNGSGALFGGGGFLLTYILIMVPAFFIL
                     LVVIGFSLRREGQVVREFLLTDLERGMFTRREYDQLGTIFGRMGASFDALTKTGVRGW
                     RARKQFNQMASELAFHRCRVSRGLNSAGIDVNEIENAYLQILESLLKDVRAR"
BASE COUNT          583 a          579 c          576 g          498 t
ORIGIN      
        1 agcattgagc ggactgccga ccatcacatc gaggttggat tcactctgcg agtagtacgt
       61 taatgaaagc ccgaaacaag tggctgctcg gcggctttgc aattgccgtc ggcgcagttg
      121 gcacagcagc cgcttattgg aagaagaaga gcatgagggt cgtaccaaaa cctgagaaaa
      181 atgcagccga cgtttgggct cgacctggga tgctggttac gtttagagct gaactgatgc
      241 cgggtcgcga ccgccacagt cgtacgttcc gtgtgaaaca gctgttaccg agcggtcgtg
      301 tctcactaca tgacgtcgat ggtgaacaca cggaaaccga gtttgagcat gtaagttgag
      361 ttactcactg ctgaattacc aattataaat ctcgcctgga ttcatcacag acaacttggg
      421 aatatttagc gcctgcaatt gccggatgat tgtgtcgcga tgcgtgggtt ttaagtgaac
      481 agcgaggatg tccattccgt tgtgggttag tttcttcagc tccttgccga gtgatgaagg
      541 ggtgaagtga cgtgagacct cggcaagctg ggccatctcg tcagggaaag aagcctcaat
      601 cagtagtgca tcgagatgtt tcgtgtcatt cactactttc cagaacgcat ccgtttccgc
      661 ggtatccgaa ctgaaagcca cactgctctt gccgtccgac accagcagac caactgtagg
      721 cacgatatgg ttaaccggga cagcgacgac attcaaatga gcgactgaga actttccgtt
      781 ctcggggatc ggaatgtatt ccatcaccgg tccaaagtca tttttcagat ctgaaaacct
      841 cggatagaca ttccaattaa aaacgtcgcg ttccaacaga ccgatcactt cccgagtggc
      901 gtggatgcgc atcggctgtc ggagcgttgg gtacagatca tcgataaaga tcggaagact
      961 cgcaatgtgg tccatgtgcg ggtgagtgac gacgatgtcg cgcactttgg acctttgttc
     1021 tgccgacaac gcgatcgcga tgctgcccgc gtcaatcgct acgcagtcgt cgatcagaaa
     1081 acaagtcagg cgttgttcaa ggtttgcgtg accctgagca tcaaaagtgc ttggtaggag
     1141 ttgaattttc actcttggtc agctctgatg aaatgacctt gcgaagtcga gccaagtata
     1201 agccagaaac cagatagcct gcgagtctta ttccttagtg aaatctgcta gcgcgctcgc
     1261 acatccttaa gcagactttc caggatttgc aagtacgcat tctcgatttc attcacatct
     1321 atgcccgcag agtttaaccc tctggagact cgacaccgat gaaacgcaag ctcgctggcc
     1381 atttggttaa actgctttcg cgcgcgccaa cctcgtacac cggtcttcgt caaagcgtcg
     1441 aaggaagcgc ccatcctgcc aaaaatcgtc cctaactgat cgtattcccg gcgagtaaac
     1501 atgcctcgtt ccaggtccgt aagtaagaac tcacgcacca cttgcccctc ccgtcgcagt
     1561 gagaagccaa tcactacgag cagaataaaa aaagcaggta ccatgataag gatgtaggtc
     1621 agcaaaaatc ccccgccacc aaacagtgct ccggagccat tccagatgct gtgcatgcac
     1681 atcgccatga gaaaaccgac gagaggagta gttaatttga tcgcaaggtt atttgtctgt
     1741 cgtgcgagcc cgagcccaat ccccgtcatg ctcgtgaaga gcgggtggga aaagggcgcc
     1801 agcgcgccac ggatgaacaa aatcaatgtc aattgaccgc caccttgtag cgctgcgttt
     1861 ccgtagtaat gaatgttctc aaccatggcg aagccgaggg ccacgaggga ggcgtagaca
     1921 attccgtcga taaccccatc gaattcgtcc ttcttgaaga aaaagaacaa gaataagatc
     1981 gcggccttgc cagactcttc tacgatcggt gcggagataa ctagagcgaa gagttcacct
     2041 gcattcttat cgccagcaag ctcagctaca gccagttgac caccggtgtt tagaataaac
     2101 gcgaagaacg tagctacgaa tgcgccccag cagaaagcgg ttgccaacat ccacatgggc
     2161 tctgactcgt aacggtcgat ccagataaca aggattacat aaagcggtac gggaatcgtc
     2221 gctgccacca gcccaa
//
LOCUS       DATCGC010000705         1594 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_477371, whole genome shotgun sequence.
ACCESSION   DATCGC010000705 DATCGC010000000
VERSION     DATCGC010000705.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1594)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1594)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1594
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_477371"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(154..894)
                     /locus_tag="VIJ87_06870"
     CDS             complement(154..894)
                     /locus_tag="VIJ87_06870"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY5444185.1"
                     /translation="MASTETMNEPTRTPAANGASALIHLEGVTKVFLTDEVETHALSG
                     IHLDIRTGEYVSIARPSGCGKSTLLSILGLLDTPSGGSYSLKGTEVANLSFPDRARIR
                     NREIGFIFQSFNLIGDLTVFENVELPLTYRGMGASDRKGFVLEALERVGMGHRAKHLP
                     SQLSGGQQQRVAVARALAGKPAILLADEPTGNLDSRNGDAVMALLKELHDGGATICMV
                     THDTRFAEHADRTIHLFDGRVVEDRMAA"
     gene            complement(935..>1594)
                     /locus_tag="VIJ87_06875"
     CDS             complement(935..>1594)
                     /locus_tag="VIJ87_06875"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HEY5444186.1"
                     /translation="LAFSRDSIEPQIASKQAAVDQAKQLAALKLDQVNALHVSAGLSG
                     VLQQLPIQIGQRVKVGDNLARVADPTKLKAQVKIAETQAKDILIDQKAVIDTRNGVVN
                     GHVVRVDPAVEQGTVTVDVAIDGELPKGARPDLSVDGTIELERLDNVVYVGRPAFGQE
                     NNTVGIFKLVDGSEAVRTPVKLGRSSVNTIEILNGLEPGDQVILSDTSSMDAHERIRL
                     N"
BASE COUNT          366 a          425 c          420 g          383 t
ORIGIN      
        1 gtcgtcgacg cgcctatacc gagggcgatg gcgagaacgg aaactgttgt aaaccccggg
       61 gcctttacga gcatccgaca ggcatatctg agatctcgta acatggcccc ggatattgtt
      121 tacatagtag gaaaaaacta accggatctc ttgttaggca gccatccgat cttcaacgac
      181 tcggccgtcg aagagatgga tggtccgatc ggcatgttca gcaaagcggg tatcatgcgt
      241 aaccatgcaa atcgtcgctc caccgtcatg cagttccttt aaaagagcca tgacggcatc
      301 accgttacgg gagtcgaggt ttccggttgg ttcgtccgcg agcagaatcg caggcttacc
      361 tgcgagggca cgcgcgacgg cgacccgttg ctgctgacca ccagagagct gacttggcag
      421 atgtttggca cgatgaccca taccgacccg ctccaacgcc tcgagcacaa atccctttcg
      481 atcgctggca cccattcccc tgtaggtcaa aggcagttcc acattctcaa acacggtcag
      541 atcaccgatg agattaaagc tctggaaaat gaatccaatc tcccggttgc gaatccgagc
      601 tcgatcggga aatgagagat tcgcgacttc agtccccttc agggaataac ttcctcctga
      661 aggagtatcg agcagaccaa gaatcgagag gagagtcgac ttgccacaac cggagggcct
      721 ggcaatggag acgtactcgc ctgttcggat atccaggtga attccagaga gcgcgtgggt
      781 ttccacttca tcagttagga aaaccttcgt gacgccctcc aggtgaatta atgcgctagc
      841 gccgttagcg gctggagtgc gagtgggttc attcatggtt tcagttgagg ccatagtatt
      901 ggtttggatc gtgttaggtt atatctggtt aagtctaatt aaggcgaatg cgttcgtgcg
      961 catccattga gctggtatcg gagagaatta cttgatcgcc tggctcaagg ccgttcaaaa
     1021 tctcgatcgt gtttacagag ctgcgaccga gtttaaccgg cgtgcgaacc gcttcggaac
     1081 cgtcgacgag cttaaaaatt cctacagtgt tgttttcctg accaaaggca gggcgaccga
     1141 cgtaaacgac attgtcgaga cgttcgagct caatcgttcc atctacgctc aggtcgggcc
     1201 gtgcaccttt cggtagttcg ccgtcgatcg caacatcgac ggttaccgtt ccttgctcta
     1261 ccgcagggtc aacccgaaca acatgcccgt taacgacacc attgcgggta tcaatcactg
     1321 ccttttggtc gatcaaaata tctttggctt gagtctcagc gatctttact tgggccttca
     1381 gttttgttgg atccgccacc cgcgccaggt tgtcgccgac tttaacgcgc tgcccaattt
     1441 gtatcggcag ttgctgcaag acgccgctta atcccgcgct tacatgtagg gcgttgacct
     1501 gatccaactt taaagctgca agttgcttcg cctggtctac tgcagcctgc tttgaggcaa
     1561 tttgtggttc aatcgagtca cgtgagaagg ccaa
//
LOCUS       DATCGC010000706         2286 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_408859, whole genome shotgun sequence.
ACCESSION   DATCGC010000706 DATCGC010000000
VERSION     DATCGC010000706.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2286)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2286)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2286
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_408859"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1721
                     /locus_tag="VIJ87_06880"
     CDS             <1..1721
                     /locus_tag="VIJ87_06880"
                     /inference="COORDINATES: protein motif:HMM:NF015655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444187.1"
                     /translation="QQERSALSDAYYFLRTLEHRLQMEHGLQTHTLPESGETRTLVAR
                     RMSFTGPDAEHEFSAALKMHTTIVRQTYDRLFAKIEGNDEATDQTVSDIRTADKETSL
                     AQAAARVFTAHLIADESDEPISLSRILLKTAQEALNPHRALLQATRIAASLEKTDEPL
                     QFRKSHLRKLITLCGSSEFFAEMIAANPTLIASLDVDVERCLRRDHRAVLRAAIDAEN
                     SFPAEMAAFRRKWAELLTEIGMLDASREISTSAANRLQTELAVASLNVAYLIARREMA
                     RRVGKSRTGPRLAFFGLGRLGTGGVDYGSDLDILITYDSLVPSPVPGLSQDEAYARVV
                     ELMIAALSSITREGYLYRVDLRLRPHGKNGPLVLSSEGLLDYLKQKSDPWEWLAYLKL
                     RAVGGDLELGKMVETHARHRIHENASKTDPLELKSETRRVRDRLEAEKATRGSQGTVD
                     IKYGPGGMLDVYFAARYLQLRDEVLDEGEDRSTAFTLERLHEEGSLMEEDYSALSAGY
                     GLLRAVDHNLRLIVGRSTRLPSPDHPTATDVATQIGFDSAEALREVLVEQMRGIREAY
                     NRIIGS"
     gene            complement(1733..1930)
                     /locus_tag="VIJ87_06885"
     CDS             complement(1733..1930)
                     /locus_tag="VIJ87_06885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444188.1"
                     /translation="MSYRKGCPRCEKRGMKTWAELTEEEREVVKRAPRAPGYSDEERK
                     ANHRWCTRCWFEETQPDQQHA"
     gene            2065..>2286
                     /locus_tag="VIJ87_06890"
     CDS             2065..>2286
                     /locus_tag="VIJ87_06890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444189.1"
                     /translation="MFRIKASYADQMELRTTIEKAREFFGELRNFADLMPGIEGIRKE
                     AGGIMRWAVRAEVPVIGAVHATFTVEKTED"
BASE COUNT          544 a          578 c          625 g          539 t
ORIGIN      
        1 ctcaacaaga gcgtagcgcc ttgtctgatg cttactactt ccttcgcacg cttgaacatc
       61 gtttgcaaat ggagcatggt ctacagacac atacgcttcc ggagtcaggc gaaacgcgta
      121 cgctggttgc gcggcgaatg agcttcaccg gacctgacgc tgagcacgaa ttcagtgctg
      181 cgttaaagat gcatacgaca atcgtgcgac aaacgtacga ccgtctcttt gcgaagattg
      241 aggggaatga cgaagccacc gatcagacgg tgagtgatat tcgaacggcg gataaggaaa
      301 ctagcctggc ccaggcagct gcccgtgttt tcaccgctca cctcatcgcg gacgaatctg
      361 atgaaccaat ttcactctcg cggattttgt tgaagacggc tcaagaagcg ctcaatccac
      421 atcgtgcatt acttcaagcg acgcgcatcg cagcatcatt agagaagact gacgagcccc
      481 ttcagtttcg caagagtcac ctacgcaagc tcataacatt gtgcggctca tccgaatttt
      541 ttgcggaaat gatcgccgcg aatcctacct tgatagcgtc ccttgatgtt gacgttgagc
      601 gatgtctgcg acgcgaccat cgggcggtat tacgggccgc gatcgacgct gagaatagtt
      661 tccctgctga aatggctgca tttcgtcgca agtgggcgga actgctaacc gaaatcggaa
      721 tgctcgacgc ctccagagaa atatcgacct cggcagcaaa tcgtcttcaa accgaacttg
      781 ccgtggctag tttgaacgtc gcgtatttaa tcgctcgtcg agaaatggcg cgccgagtgg
      841 gcaagtcgag gacgggtccg cgtttggcat tttttggact cggtcgactc ggcaccggcg
      901 gtgtcgatta tggttctgat ctcgacatcc tgattaccta cgactcgctt gttccttcac
      961 ctgtaccggg tttgtctcaa gatgaagcgt acgcgcgcgt cgttgagttg atgattgctg
     1021 ctctctccag tatcaccagg gaagggtact tgtatcgcgt agatcttcgg ctgcgaccgc
     1081 acggaaagaa tggaccgctg gtcctaagtt cagaaggttt gctcgactac ctcaagcaga
     1141 agagcgatcc atgggagtgg cttgcatact taaagctgcg cgccgtgggt ggcgatctcg
     1201 aacttggaaa gatggtcgag actcatgcgc gacatcgcat tcatgagaac gcctccaaaa
     1261 cagatcctct tgaattgaaa agcgaaacaa gacgagtaag ggatcgcttg gaagcggaaa
     1321 aggcaacgag aggaagtcag gggacagttg acatcaagta tgggccaggc ggaatgctgg
     1381 atgtgtattt cgccgctcgg tacctacagc tgcgggatga ggtgcttgac gaaggtgaag
     1441 accgttcgac tgcttttacg ctcgaacgac ttcacgaaga gggctctctt atggaagagg
     1501 attattcggc attgagcgcg ggttacgggt tactccgagc ggtcgatcac aatctgcgct
     1561 tgatagtggg acgttcgacg cggttgccga gcccggacca tcctaccgca acggacgttg
     1621 caacccagat tgggtttgat tcagcagagg cgcttcgtga agtactcgtt gaacaaatgc
     1681 gaggcatccg ggaggcatac aatcgcatta tcggttccta acagaacaac gatcaggcgt
     1741 gttgttgatc cggctgagtt tcctcaaacc agcatcgtgt gcaccaacga tgattggctt
     1801 ttctttcctc gtcagagtaa cccggagctc gcggcgcgcg ttttacaact tcccgctctt
     1861 cttccgtcag ttccgcccat gtcttcattc cacgtttctc gcagcgcggg caaccttttc
     1921 tgtagctcat attaaattat tctttcatga caaacttagt tatttactgg agacttttcc
     1981 tcgtgtaagt tagcaattgg agatgcaggc aaacaagttg tcagagcgtg catccacatg
     2041 tcgacaacgg ttgacggaga acaaatgttt cgaatcaaag cttcctacgc ggatcaaatg
     2101 gagttgcgga caacgattga gaaggcccgc gagttttttg gcgagctccg caatttcgcc
     2161 gatctcatgc ccggtattga aggtatacga aaagaagccg ggggcatcat gcggtgggcg
     2221 gtacgcgctg aagtgcccgt aatcggcgca gtccatgcaa ccttcacagt tgaaaagacc
     2281 gaagac
//
LOCUS       DATCGC010000707         1520 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_275969, whole genome shotgun sequence.
ACCESSION   DATCGC010000707 DATCGC010000000
VERSION     DATCGC010000707.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1520
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275969"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(62..505)
                     /locus_tag="VIJ87_06895"
     CDS             complement(62..505)
                     /locus_tag="VIJ87_06895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444190.1"
                     /translation="MFANPRTFRCPNCNEMINDTMTTCRYCSVTIDPGIAALVAERQE
                     KANQAYSDASYLRNAATAMFVFLAVGLVFTFAYIGFLATFVISAVLLVRWQLRFGDLL
                     TNDPDYGRAKRSRNIAAVLIIGAIPIGIILSPFLDLLIQTVEDLG"
     gene            630..714
                     /locus_tag="VIJ87_06900"
     tRNA            630..714
                     /locus_tag="VIJ87_06900"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:664..666,aa:Leu,seq:tag)
     gene            813..>1520
                     /locus_tag="VIJ87_06905"
     CDS             813..>1520
                     /locus_tag="VIJ87_06905"
                     /inference="COORDINATES: protein motif:HMM:NF017508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HEY5444191.1"
                     /translation="MKTELVDLSPTRKEIKIEIEPAQIRTAYDRISERYAKGANVPGF
                     RRGHAPQSVVRNRFKSEIRSEVLRELLPEAVNNAIGEHSLAAIGEPDVHLDNSEALEK
                     FGEEPITVKVGVEVFPEVKLDKYKGLEAVRRTRPVSETDVDKMIEGLRDASASLQPVE
                     DRGAESGDTVTVNVVGKFVDEPDEEDIKADDVEVVLGGEGVQQEFTDNLLETKPDDTK
                     SFEVNYPVDFTSQGLAGK"
BASE COUNT          417 a          384 c          393 g          326 t
ORIGIN      
        1 gatatgttcg gtaagccaaa ggtgacctac agcatcgcct gaatggtgct tactactatt
       61 ttcagcctag gtcttcgaca gtttgaatga gcaggtctaa aaacggactc aggataatac
      121 cgatcggtat cgctccaatt attaaaactg ccgctatgtt tcgcgaacgt tttgcccgcc
      181 cataatccgg atcgttcgtc agcaaatctc caaacctcaa ctgccaacga accagcaata
      241 ccgccgatat tacaaaagtt gcgaggaacc cgatgtaggc aaacgtaaag acgagaccga
      301 ccgctaagaa cacaaacatg gcggtcgccg catttcggag gtaactagcg tcgctataag
      361 cctgattagc cttttcctgc cgctcggcaa ctaacgccgc tatccccgga tcgatagtca
      421 ccgaacaata cctacacgtc gtcatggtgt cgttaatcat ctcgttgcaa ttgggacaac
      481 gaaaggtgcg aggattggcg aacattcggg gcgcgctcct gagaaaaggt tggtgcagaa
      541 taccaaacct cgctgcttgt gactaacgcg agtagcgcat gctattcttg cgctcgactg
      601 ctcacagggc agttttagtt aatacaaatg cgaaagtggc ggaattggca gacgcgccag
      661 acttaggatc tggtaccgag aggtgtgggg gttcgagtcc cccctttcgc accaacagcg
      721 ttggtctttg gccttgggtc tttggtcttg gatcagttat cggatgaaga gtccaaagac
      781 ctaagaccaa agaccgaaag ccaaattgaa taatgaagac tgaattagta gacctctctc
      841 caactcgtaa agagatcaaa atagaaattg aaccagcgca gattcgcacc gcgtacgatc
      901 ggatcagtga gcgatacgcc aagggcgcaa atgtgcccgg gttccgtcgc ggtcacgcgc
      961 cacagtctgt agttcgcaat cgcttcaaga gtgagatcag aagcgaagtc ttgcgcgagt
     1021 tattaccgga agccgtgaac aatgcgattg gcgaacactc gctcgcagcg atcggcgaac
     1081 ccgacgtgca tctcgacaac tccgaggcac tcgagaaatt tggtgaagag ccaatcacgg
     1141 tgaaggtcgg cgtcgaagtg tttcccgaag ttaagctcga caagtacaaa ggcctggaag
     1201 cagttcgacg tactcgacct gtatccgaaa cagacgtcga caagatgatc gaaggcttgc
     1261 gtgacgcttc tgcttcgctg caacccgtcg aagatcgagg agctgaatct ggcgacacgg
     1321 taacggtcaa tgtcgttggc aagtttgtcg acgagccaga cgaagaagac atcaaagctg
     1381 atgacgtgga agtagttctc ggcggcgaag gtgttcagca agagttcacc gacaacctcc
     1441 ttgaaacaaa acccgacgac acaaagagtt ttgaagttaa ctaccctgta gatttcacct
     1501 ctcaaggtct cgccggcaaa
//
LOCUS       DATCGC010000708         1433 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_177699, whole genome shotgun sequence.
ACCESSION   DATCGC010000708 DATCGC010000000
VERSION     DATCGC010000708.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1433)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1433)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1433
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_177699"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..615
                     /locus_tag="VIJ87_06910"
     CDS             <1..615
                     /locus_tag="VIJ87_06910"
                     /inference="COORDINATES: protein motif:HMM:NF024591.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY5444192.1"
                     /translation="YGMTETSPVTHSSPANPAEVKFGSVGVAAPNTEIKIIDVDTGET
                     LGRGAKGEVCARGPQIMKGYLNKPDATANTIDADGWLHTGDIGYADDDGHFFIVDRLK
                     ELIKYKGFQVPPAELEAVLLTHPCVADAAVIPIPDDEAGEVPKAIVVLRKESAAEEIL
                     EFVAERVAPHKRIKFVEFVDQIPKSPAGKILRRVLVQREREKGQ"
     gene            795..>1433
                     /locus_tag="VIJ87_06915"
     CDS             795..>1433
                     /locus_tag="VIJ87_06915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444193.1"
                     /translation="MYFRRSQWLFVILFVIAVPFSSAAQRTSRTAPKPSQTKTTAPTQ
                     PASAPAPKVVAADWETLKPEKEDFTILMPKDTTTQIAPFEYHKFQLNTRLYMSAPAAG
                     PIVGVASIAGIKSTPGSNSDFERFNSYADAFKQFFPPKVRNDAVPKMILTATRPFHGY
                     TARVYKLTIGDLTGTVNAVVTRKRFYAIALLNTTKDDALEEKFISSFVIPDKP"
BASE COUNT          366 a          380 c          364 g          323 t
ORIGIN      
        1 tatggaatga ctgagacgag tccggtgacg cattcctcgc ctgcgaatcc tgccgaagtt
       61 aagtttggct ccgtcggcgt cgccgcgccg aacacggaaa tcaaaattat cgacgtagat
      121 actggagaaa ctcttggtcg aggtgcgaaa ggcgaggttt gtgcacgagg cccacaaata
      181 atgaagggat acctgaacaa acccgatgct actgcaaaca cgatcgatgc tgatggctgg
      241 cttcatacgg gcgacatcgg ctatgcagac gacgatggac atttcttcat cgtcgatcgc
      301 ttgaaggaac tcatcaagta caaaggcttt caggtcccgc cagccgaact tgaagcggtg
      361 ttactgactc acccgtgtgt tgctgatgca gctgttattc cgattcctga cgacgaagcc
      421 ggcgaagtac ccaaagcgat cgtggtgttg agaaaagaat cagctgctga ggagattcta
      481 gagttcgttg ccgaacgcgt tgcgcctcac aaaaggatca agttcgtgga gtttgtcgac
      541 caaattccga agtctccagc gggaaagata ttgaggcggg ttttggtgca aagggaaagg
      601 gagaaaggtc agtaggcaga aggcaggagc aataggcagc agtcgtgagt cagttgctcg
      661 tacgctccgc tgtcgcctgc ttcctgcctt ctgcctattg tctctcttga cactcgcgaa
      721 cctgaagaat agagtccgaa ttgcgcagcc ctgcagcttg caaatcacta aacagagaat
      781 caggaggcaa tgacatgtac ttccgtcgct cacaatggtt atttgtaatt ctctttgtga
      841 tagcggtgcc tttctcttct gcggcgcaaa ggacatcaag gacagcgcca aagccctcac
      901 aaacaaaaac gaccgcaccc actcaacctg catctgcgcc cgctccaaaa gtggttgcgg
      961 ccgattggga gactctcaag cccgaaaagg aagacttcac catcctgatg ccgaaggaca
     1021 cgaccaccca gatcgctcca ttcgagtacc acaaatttca actcaacacg cgcctttata
     1081 tgtctgctcc tgcagcaggc ccgattgttg gtgtcgcttc catcgctggc attaagtcga
     1141 ccccaggatc gaattccgac ttcgaacgtt tcaactccta cgccgacgcc ttcaagcagt
     1201 tcttcccgcc aaaggttcgt aacgatgcag tgcctaagat gattctgaca gctaccaggc
     1261 cttttcatgg ttacacggct cgggtttata aactaaccat tggagatttg accggaacgg
     1321 tgaacgcggt tgtcacgaga aagcgcttct acgcaatcgc gcttctcaac acgactaagg
     1381 acgacgcgct cgaagagaag tttattagct cgttcgtcat tcctgacaaa cct
//
LOCUS       DATCGC010000709         1093 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_142990, whole genome shotgun sequence.
ACCESSION   DATCGC010000709 DATCGC010000000
VERSION     DATCGC010000709.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1093)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1093)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1093
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_142990"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..997)
                     /locus_tag="VIJ87_06920"
     CDS             complement(<1..997)
                     /locus_tag="VIJ87_06920"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5444194.1"
                     /translation="MQTLWQDIKYGARMLFKNPGITAIVILALALGIGANTAIFSVVN
                     SVLLRPLPYAESDRLVFLNEKSAVLDEMSISYPNFEDWRAQNQSFEHIGVYNRASYNL
                     TGNGEAERIVTGQVSADLFTVLRINPFMGRVFTNDEDKPGGSPVVVLGYGLWQRRFGG
                     QGNVLNQPITLNGKSYTVIGIMPQDYQYPSRAEMWVPVGQLSDQASWKSRGNHPGLYG
                     VARLKPGVSFDQSVADMARVASNLEKQYPDSNSGNGIRMRPLLEIYVSDIRRALWVIF
                     GAVAFVLLIACANIANLLLARATARRKEMAIRSALGAGRWRIARQLLTESILLSIV"
BASE COUNT          269 a          293 c          284 g          247 t
ORIGIN      
        1 caacgatcga aagcaaaata ctttcagtca acaactgtcg cgcgattcgc cagcgaccag
       61 ctcccagggc cgaacgaatt gccatttcct tgcgacgagc agtggctcga gcgagaagca
      121 agttggcaat gtttgcgcaa gcaatcaaca gaacaaacgc aaccgcacca aagatgaccc
      181 agagagcgcg tctgatgtcg ctcacataga tttctaacag tggccgcatg cgaataccgt
      241 tgcctgaatt ggaatcggga tattgctttt caagattcga agccacgcgg gccatgtcgg
      301 caaccgattg gtcgaaacta acccccggct tcaaacgagc gacgccatag agtcccggat
      361 gattaccacg actcttccat gaggcctgat cggacaactg accaacaggc acccacattt
      421 ccgcacggct ggggtactga taatcctgcg gcatgatgcc aatcacggtg tagctctttc
      481 cgttgagagt gattggctga ttcaaaacat ttccctgacc accaaagcgt cgttgccata
      541 agccatagcc gaggacgaca acgggcgatc ctcccggctt gtcttcgtcg tttgtaaaca
      601 cgcggcccat aaaaggattg atacgcagca cagtaaatag atcggccgat acctggccgg
      661 tgacgattcg ttctgcctcg ccgttcccgg tgaggttgta acttgcgcgg ttgtagacac
      721 caatgtgttc aaacgattga ttctgtgcgc gccaatcttc aaagttggga tatgagatcg
      781 acatctcgtc gagcactgcg ctcttctcat tcaggaacac gagtcgatca gactccgcgt
      841 aaggtagcgg ccgaagcagt acggagttca cgacactgaa gatagccgtg tttgcgccga
      901 tgccgagagc gagtgccaga atcacgatgg cggtgatgcc gggattcttg aacagcattc
      961 gcgcgccgta tttgatgtcc tgccagagcg tttgcatgtg agtctcccca ttaacattga
     1021 agatttaaga tttttgacgt ggccctttag taactaattg gttcttcggt ggcgcgctct
     1081 tctgagaccg cag
//
LOCUS       DATCGC010000710         1821 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_79374, whole genome shotgun sequence.
ACCESSION   DATCGC010000710 DATCGC010000000
VERSION     DATCGC010000710.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1821)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1821)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1821
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79374"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..553)
                     /locus_tag="VIJ87_06925"
     CDS             complement(<1..553)
                     /locus_tag="VIJ87_06925"
                     /inference="COORDINATES: protein motif:HMM:NF013767.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hpt domain-containing protein"
                     /protein_id="HEY5444195.1"
                     /translation="MDPILDELEDRVEQIFAATQELREAAGDGKTTRQLLDSIFRNVH
                     SLKASASSNDLDNLAHIAHQFENLLHALRVGKAYLNVEVLRAFDEISDAMFASLRPES
                     SQTSSLDTLSHRLQELSEQKVRSSRLEVDIVLNAVPSEIWEALSEEEKHRLEQAIGEG
                     GSLFMLATSFDIADFDQLFQNLKD"
     gene            complement(650..1102)
                     /gene="nusB"
                     /locus_tag="VIJ87_06930"
     CDS             complement(650..1102)
                     /gene="nusB"
                     /locus_tag="VIJ87_06930"
                     /inference="COORDINATES: protein motif:HMM:TIGR01951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HEY5444196.1"
                     /translation="MGSRRKARECALQMLFAADVAEMPADDVVRTYWAELGESDLDET
                     AREFSTRLASGTLANLELLDERIRSRAEHWRISRMAVVDRNILRLAVYEFLYEPTPRT
                     VAINEALEIARRFSTYEATQFINGILDAIKRDLDEQQPQTNVQPEIEE"
     gene            complement(1156..1635)
                     /gene="ribH"
                     /locus_tag="VIJ87_06935"
     CDS             complement(1156..1635)
                     /gene="ribH"
                     /locus_tag="VIJ87_06935"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: protein motif:HMM:NF013081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HEY5444197.1"
                     /translation="MQPTVHEGRLNAEGFGFAIVASRWNEFISGRLVDGALDALKRLG
                     AHESKVTVYRVPGAFEIPLLALQLAKSHKFDSIICLGTIIRGQTPHFDYIANEVAQGI
                     SKAGLDTGVPVVFGVVTADTVDQAIDRAGVKLGNKGFEAAMTAVELVNLYQEAFKEG"
BASE COUNT          431 a          457 c          474 g          459 t
ORIGIN      
        1 tatctttcag gttttgaaag agctgatcaa agtccgcaat gtcgaagctg gtggcaagca
       61 taaagagtga accaccttca ccaatcgcct gctccaatcg atgcttctct tcttcgctta
      121 gggcctccca gatttccgac ggtaccgcgt taagaactat atccacttct agacggctac
      181 tccgaacctt ttgctcagac agttcctgta gtcggtggga cagagtgtcg agtgaactag
      241 tctgggagga ttccggtcgc aggctggcaa acatagcgtc ggatatttcg tcaaatgctc
      301 ttaagacttc aacgttcagg taagccttgc cgacacgtaa tgcgtgaagg agattttcaa
      361 actggtgcgc gatgtgagcc aggttatcga ggtcgtttga agaggcggag gctttgagac
      421 tgtggacgtt acgaaagatc gaatccagta gctgtcgagt agtttttccg tcaccggcgg
      481 cttcacgtag ttcttgagtc gcggcgaaga tctgctcgac acgatcttcc aattcgtcca
      541 ggattggatc cacggaggaa tactacctca gatctcagat ttcaggttgt gttctagtcc
      601 ttcggttgag ttggagtctc tgagatctta aatccgagat ctgagattct tactcttcta
      661 tttccggctg aacattagtc tgtggttgtt gttcgtcgag atcgcgcttg atggcgtcga
      721 gaatgccatt gatgaattgt gtggcttcgt aggtggaaaa ccggcgggct atttcaagtg
      781 cttcgttgat tgcgactgta cgaggtgtag gttcgtagag aaactcgtaa acggcaagac
      841 gcaggatatt gcgatcgaca accgccatgc gcgaaatgcg ccagtgctct gcgcgtgagc
      901 gaatccgctc atcgagcaat tcgaggttcg ctaacgttcc cgaagcgagg cgtgtggaga
      961 actcccgcgc tgtctcgtcg agatccgatt ctccgagctc agcccagtag gtgcgaacca
     1021 catcgtccgc gggcatttcg gcaacgtcag ccgcaaagag catttgcaag gcacattcac
     1081 gtgccttacg gcgcgaaccc ataataaatc aaggatgaag tcggaggtcc gaacgaaaaa
     1141 caattcgctg acctttcatc cctccttaaa agcttcctgg taaagattta ctaactcaac
     1201 cgccgtcatg gcggcttcaa accccttgtt ccccagtttc actcccgctc gatcaattgc
     1261 ctgatcgacg gtatctgccg tcacaacgcc aaacacgact gggactccgg tatccaaacc
     1321 cgccttggag attccttgcg caacttcatt ggcgatgtag tcgaagtgtg gtgtctgacc
     1381 acgaatgatt gttcccaggc agatgataga gtcaaacttg tgagactttg cgagttgcag
     1441 tgctaacaac ggaatctcaa atgcaccggg caccctatag accgtgacct tgctttcatg
     1501 agcaccgaga cgcttaagtg catctagagc gccatccact aaacggccgg agatgaattc
     1561 attccagcga ctagcgacga tggcgaaacc aaatccttca gcgttaaggc gaccttcgtg
     1621 aaccgtgggt tgcaatccac ttcaactccg caaacaaaat ccgtactgct tttgcagtat
     1681 aggagatggc tggagaggca gcaagttggt gaacttttta ggtgctggtt cattttgagc
     1741 aggcgtagtg tctcgcgaac ttcctctcat tctcaccgtg gctttagccc ggtggtatgg
     1801 cagcggtcaa gaatgagaac g
//
LOCUS       DATCGC010000711         1058 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_408931, whole genome shotgun sequence.
ACCESSION   DATCGC010000711 DATCGC010000000
VERSION     DATCGC010000711.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1058)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1058)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1058
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_408931"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..783)
                     /locus_tag="VIJ87_06940"
     CDS             complement(<1..783)
                     /locus_tag="VIJ87_06940"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: protein motif:HMM:NF025034.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="retropepsin-like aspartic protease"
                     /protein_id="HEY5444198.1"
                     /translation="MDVVKIMIRSFLSLLILWLLPVSGAHGPEPTAPIISSNSQTETR
                     PAPQVIPFEFINKHIFIPVRVNDSRPLWFVLDTGDQYAVINSDTANSLGLKLRGQVRV
                     GGAGSQTLTGAFVDDAKFVLQGLKGFIQPVTLALPIGHLAPRLGQDFDGILGSEFISQ
                     FVVEIDYQARVLRLHDKNNFNYTGRGEAVPIKFRYGHPILEAEVTPQGGMPIKGDFVL
                     DIGAGHALALYSPFVRQHGLLYETKTIRSLGAAGAGGETTGRV"
     gene            complement(771..>1058)
                     /locus_tag="VIJ87_06945"
     CDS             complement(771..>1058)
                     /locus_tag="VIJ87_06945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444199.1"
                     /translation="SLRELVWSYFDPYVDFTGRIKGYGLTSLYDLGDYDWRFSSRRMI
                     KIENHLREMKHKKLKSSDERYKKLLARYHRYKKRFPNRSARYYANAWQWML"
BASE COUNT          263 a          282 c          252 g          261 t
ORIGIN      
        1 tacgcgcccg gtcgtctcac cgcccgctcc tgccgctccg agcgatcgga ttgtttttgt
       61 ttcgtacagg agaccgtgtt gtcttacgaa ggggctatat aacgcgagcg cgtgaccggc
      121 gccgatgtcc agcacaaaat cgcctttgat tggcatccct ccttgtggcg taacttccgc
      181 ctcaagaatc ggatgaccat acctaaattt aatcggtacc gcctcacctc ttccggtgta
      241 attgaagttg ttcttgtcgt gtagtcgcaa cacccgagcc tggtaatcaa tttccaccac
      301 aaactgcgaa ataaactcgc taccgagtat tccgtcgaag tcttggccca atcttggtgc
      361 cagatgtccg atcggcaaag caagagtcac aggttggata aaccctttaa gtccctgaag
      421 cacaaacttc gcgtcgtcaa cgaacgcacc ggtcaaagtt tgagatccgg ctccgccaac
      481 tctaacttga ccgcgaagct tcaagcccag cgaattcgcg gtgtccgaat tgataactgc
      541 atactgatcg ccggtatcta acacaaacca caacggtcgt gaatcattaa cgcggaccgg
      601 aatgaagatg tgtttgttga tgaattcgaa tggaataact tgaggcgccg gacgcgtttc
      661 agtttggctg ttgctgctga ttattggcgc agtaggctca ggcccatgcg cgccgctcac
      721 aggtaacagc cacaagataa gcaagcttaa gaaggaacga atcatgattt ttacaacatc
      781 cattgccatg cattggcgta atagcgagca gaccgattgg gaaatcgctt cttgtaccgg
      841 tgataacgcg cgagcagctt cttgtatcgc tcgtcagacg acttcagttt cttatgcttc
      901 atttccctca gatgattctc aatctttatc atgcgacgcg aagagaagcg ccagtcgtaa
      961 tcaccgaggt catacagact tgtcaggccg tatcccttga tgcgtccagt gaagtcgacg
     1021 tatggatcaa aataactcca taccagttcg cgaagtga
//
LOCUS       DATCGC010000712         1048 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_477496, whole genome shotgun sequence.
ACCESSION   DATCGC010000712 DATCGC010000000
VERSION     DATCGC010000712.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1048)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1048)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1048
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_477496"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..346)
                     /locus_tag="VIJ87_06950"
     CDS             complement(<1..346)
                     /locus_tag="VIJ87_06950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444200.1"
                     /translation="MTATTTRENNNKPDAVPFYEALNKALKKRKTKIDGVCSPSDPVA
                     KRILEEYGAVFVATRKVTPPPVCVFSNEEQVTKFQEAAGYDQEQIGFDEIELQPEASK
                     QLRKARKTAQKEG"
     gene            629..982
                     /locus_tag="VIJ87_06955"
     CDS             629..982
                     /locus_tag="VIJ87_06955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444201.1"
                     /translation="MIKADLFMELVATYRKHGWELKTALLLPATRLELSAKEPDLLTP
                     ITIKEATFDGLWFSRPSHNSRVAWELRLLAETQYALFETFEADETEEQREEMRLEMEA
                     RMRDYVHGTDTERGH"
BASE COUNT          258 a          244 c          284 g          262 t
ORIGIN      
        1 gaccttcctt ctgtgcagtc ttacgagctt tcctaagttg tttcgaagct tcaggctgta
       61 attctatttc gtcaaatccg atttgctcct gatcgtaacc ggctgcctcc tgaaactttg
      121 tgacttgttc ctcatttgaa aaaacacaaa cgggaggcgg cgtcactttc ctggtagcaa
      181 caaaaacagc accgtattcc tcaaggattc ttttcgcgac cggatcggaa ggagagcaaa
      241 cgccgtcgat cttagtcttt cgtttcttga gtgctttgtt aagtgcttca tagaacggaa
      301 cggcgtccgg cttgttgttg ttttctcgtg tggtagttgc agtcatctgt tgggcggcgg
      361 cttcacgcgc aaatgcgggc cacggtccgg cgatcgcagt gcacagtgta ataaaaacca
      421 gggaactgaa ttgggtagag cgaggggctt tcagtcgggt ctttgatatg tctggacagc
      481 ctttgtatac agtggaaacc ttatcgtccc gaaacatgaa gccaaattaa agagaccttt
      541 caaacaggcc gatgatagtg gtcggtgttc ataacggtca acagcactgg cccgtgggtg
      601 tggtagtctt tgccataaga gttcgacaat gattaaagct gatttgttta tggaactggt
      661 cgcgacctac cgcaaacacg gttgggagtt gaagaccgcg ctactgctac ccgctactcg
      721 gctcgaactg tctgcgaaag aacccgatct gttgacacct attacgatca aagaagcaac
      781 gttcgatggc ctctggtttt cccgtccatc acacaatagt cgagtagcgt gggagctccg
      841 tctcctggca gaaactcagt atgcgctgtt cgaaaccttc gaggcggatg agactgaaga
      901 acaacgcgag gaaatgagac tcgagatgga agcacgaatg cgcgattacg ttcacgggac
      961 agatactgaa cgtggacatt gagagtgagg gctagacagc aggatcagtc ggcaggaggc
     1021 aggcagtacg caccgcgatt cagtaagt
//
LOCUS       DATCGC010000713         1126 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_43384, whole genome shotgun sequence.
ACCESSION   DATCGC010000713 DATCGC010000000
VERSION     DATCGC010000713.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1126)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1126
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43384"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(81..1055)
                     /locus_tag="VIJ87_06960"
     CDS             complement(81..1055)
                     /locus_tag="VIJ87_06960"
                     /inference="COORDINATES: protein motif:HMM:NF020039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HEY5444202.1"
                     /translation="MRTTARIVCIIAATIVVCCSLTVARAEAPSRRFELRAESPEFWK
                     LVDEKAQLARVATDFGFTEGPVWDESGFLYVSDEEKNKIYRVYLDGRKEELISLGDPD
                     GNTYDRNHRLIDCASVLRAIIHVTPDGKYTVLADRFEGKKLNSPNDVVTGPDGAMYFT
                     DPTLDLVKGEKQEISYQGVYRLDEKGNLRLLIKDLPQPNGLAFSPDGKRFYVDDDEQR
                     NIHVYDVGRDGTLSNGRVFGEEPGGKDDGVPDGIKVDEKGNLFVTGPKGIWVWDPQGH
                     HLGTIVVPEQPANLTWGDKDYRTLYITATSSVYRLQMKTRGFVPYLKH"
BASE COUNT          249 a          321 c          269 g          287 t
ORIGIN      
        1 ccaacatgtg actagaattc ggtagtccgt cataaatcct cttccacaat ggacgaactc
       61 atctaaccta cgcaccccat tcaatgcttc aggtagggaa cgaagcctcg agttttcatt
      121 tgtaaccggt acacagacga cgttgccgtg atgtacaacg tgcgatagtc cttgtctccc
      181 cacgtgagat tggcgggctg ttcgggaacg acaattgttc ccagatgatg tccttgggga
      241 tcccacaccc aaatgccttt cgggcctgtt acaaaaagat ttcctttttc gtcaacttta
      301 attccgtccg gcactccgtc atctttgcca ccaggctctt ccccgaatac gcggccattc
      361 gacagcgttc cgtcgcgacc gacgtcgtag acgtgaatgt tccgttgctc gtcgtcatcg
      421 acatagaacc gcttgccatc cggagaaaag gcgagcccgt tgggctgagg aaggtccttt
      481 atcagcaaac gaaggttgcc tttttcatca agccgataaa ctccctggta tgaaatttcc
      541 tgtttttcac ccttcacgag atcaagagtc ggatctgtga aatacatcgc cccgtctggc
      601 cctgttacca cgtcgttggg gctgtttaat ttcttccctt caaatcgatc tgccaacact
      661 gtgtatttac cgtcgggcgt gacatggatg atcgcccgca ggacgctcgc acagtcgatg
      721 agccgatgat ttcgatcgta ggtattgcca tccggatctc caagagatat gagctcttcc
      781 tttcggccgt cgaggtagac gcgatagatc ttatttttct cctcatcact gacgtaaagg
      841 aagccggact catcccaaac cggcccctca gtgaacccaa agtctgtggc cacgcgcgcg
      901 agttgagctt tctcgtcgac gagtttccaa aattccggcg actcggcccg aagttcaaaa
      961 cggcggctgg gggcttccgc gcgcgccaca gtaagagagc agcaaacaac tatcgtcgct
     1021 gcaatgatgc aaacaatccg agcggtagtt ctcactcagt ttcctttctt gatggcagct
     1081 ttgcgcgaat tgggctgaac tttggactca gcgcttgcgt tccccg
//
LOCUS       DATCGC010000714         1723 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_79490, whole genome shotgun sequence.
ACCESSION   DATCGC010000714 DATCGC010000000
VERSION     DATCGC010000714.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1723)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1723)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1723
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79490"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..556)
                     /locus_tag="VIJ87_06965"
     CDS             complement(<1..556)
                     /locus_tag="VIJ87_06965"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY5444203.1"
                     /translation="MKTWLKSKLPLPAKLALKRLLKPFRREATLPAWVFETPKLSSDG
                     RVDFNEVERFLNSTAPPTRSSTLAIKTSIVIPVYNKAEFTFQCLRSLIAEIDFNETEV
                     IVVNNASTDETSALLSHFANWVEVLDNPDNRGFGDASNQGGAWAHGQFLVFLNNDTIV
                     LPGWLDTLVETIGRDEKIGVVGSLL"
     gene            complement(611..>1723)
                     /locus_tag="VIJ87_06970"
     CDS             complement(611..>1723)
                     /locus_tag="VIJ87_06970"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide ABC transporter ATP-binding
                     protein"
                     /protein_id="HEY5444204.1"
                     /translation="WALKDVSFEVAPGEVVGIIGRNGAGKSTLLKILSQITRPTEGRV
                     ALNGRVGSLLEVGTGFHSELTGRENVFLNGAILGMTRVEIQRKFDEIVAFAETEQFLD
                     TPVKHYSSGMIVRLAFAVAAHLEPEILIVDEVLAVGDVEFQKKCLGKMNEVTREGRTV
                     LFVSHDFNAVNSICERAILLHQGSVAMSGVTADVTRYYLDHSNNMYSPITWSPRPDDN
                     VDEVSLNSVNILQNDLATSAINCRDPFIIHIDYLIKQPLRGSRFFLIVRNDQGEVVFT
                     TSDYDVMTTEAETRRPGRFLSRILIPGGLLKTGGYYGSLGLDIKDDRVVFAADDTVHF
                     DVFEPEDDTQATRHRRPGAIAPLLSWQTTELKSNER"
BASE COUNT          427 a          450 c          425 g          421 t
ORIGIN      
        1 ggagcagcga gccaactacg ccaatctttt cgtcacgtcc tatagtctcc accagcgtat
       61 ccagccatcc gggcaaaaca attgtgtcgt tgttcaggaa gacaagaaat tgtccgtgcg
      121 cccaagctcc tccttgattg gaagcgtctc cgaagccgcg attatccggg ttgtccaaca
      181 cttcaaccca attcgcgaag tgcgaaagga gcgctgacgt ttcgtcagtc gacgcattgt
      241 tgacgacgat tacttcagtc tcattgaaat cgatctcggc aatcaatgag cgaagacact
      301 gaaacgtgaa ctcggctttg ttgtaaacgg gaatgacgat tgaagtcttg attgctaagg
      361 ttgatgatcg ggtgggagga gctgttgagt tgaggaatcg ctcgacttcg ttgaaatcaa
      421 cccgaccatc gctcgagagc ttcggtgttt caaataccca ggcggggagc gtcgcctcac
      481 gacgaaaagg cttcaacagg cgtttcaaag ccaacttcgc cggcaacggc aatttgcttt
      541 ttagccaggt tttcattaaa ccgaagggtg gccaacggaa aagatcttag cgaaaagaga
      601 ttcagttatc tcaacgttcg ttactcttca gttcggtagt ctgccaactc aaaagtggag
      661 caattgcacc gggtcgtctg tgtcgagttg cctgcgtatc gtcctcgggt tcgaatacgt
      721 cgaagtgaac agtgtcgtcc gcggcaaata ccactcgatc atccttgata tcgagaccca
      781 aactgccgta gtaaccaccc gtcttcaata aaccaccggg tatcaaaatg cggcttagaa
      841 accgaccggg tcttctggtc tctgcttccg tagtcataac gtcatagtca gacgtggtaa
      901 agaccacctc accctggtcg ttgcgaacta tcagaaaaaa ccgcgaaccg cggagtggtt
      961 gcttgatcaa ataatcgatg tgaatgataa aagggtcgcg acagttgata gcacttgtag
     1021 ccaagtcgtt ttgcagaatg ttcacgctat tgagcgaaac ctcatcgaca ttgtcgtcag
     1081 ggcgtggcga ccaggttatc ggcgaataca tgttgttgct gtggtcgagg taatagcgtg
     1141 ttacgtcagc agtcacgcct gacattgcta ctgatccttg gtgcaacagg atagctcgct
     1201 cgcaaatgga gttgactgca ttgaagtcat gactcacgaa caagaccgtt cgaccttcac
     1261 gcgtgacttc gttcatcttg ccgagacact tcttttgaaa ttcgacgtcg ccgactgcca
     1321 gcacctcgtc gacaatcaat atctccggtt caaggtgagc ggcgaccgca aacgccaatc
     1381 gcacaatcat gccggatgaa tagtgtttga ccggtgtatc gagaaactgt tccgtctcgg
     1441 caaacgcgac gatctcatcg aacttgcgtt gaatttcgac gcgcgtcatt cccaggatcg
     1501 cgccgttgag aaaaacgttc tctcgtccag taagttctga gtgaaatccc gtccctacct
     1561 caagcaaact accgacgcgt ccattcaagg caacccggcc ttctgtcggt ctggtgattt
     1621 gcgaaagtat cttgagtaac gttgatttgc ctgcgccgtt gcggccaatt attccgacaa
     1681 cttctccggg cgccacttca aaactcacat ccttgagcgc cca
//
LOCUS       DATCGC010000715         1298 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_177865, whole genome shotgun sequence.
ACCESSION   DATCGC010000715 DATCGC010000000
VERSION     DATCGC010000715.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1298
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_177865"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1270)
                     /locus_tag="VIJ87_06975"
     CDS             complement(<1..1270)
                     /locus_tag="VIJ87_06975"
                     /inference="COORDINATES: protein motif:HMM:NF024909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HEY5444205.1"
                     /translation="MRFVFTKVFYLLIALGFIPLAMSWQRPWLIWLAFGYDLVVLVVA
                     IFDSRTSTLPKGVAITREFGGRFAVGAENEVRIQIQNASNRPIKVIVKDEFPPLMALN
                     GVREGEMNVDAQSTVTLIYGLTPPRRGRFEFGHTALRFRSRLHLVWCDTKVTSPIVVK
                     VYPNMRRAREAELKALGARSVVSSHRKTSWRGEGREFESMRDYVRGDELRHISWTATA
                     RRGKLTTRQYQIERDQTILIALDAGRLMTARIENETKLDSAVHATLALFSAAARAGDN
                     AGLVVFGRKIKSFLPPSRGRDHIESALEALYGVEPEMIEPSYARAFEFISANSKRRAL
                     VVLLTDLVDEEGSKELLTSLHLLRPRHLPLVVTIADRDLKAVVREAPTSTRELFTQSV
                     AEEIIHHREAALRLVESQGGLALDVTAAALA"
BASE COUNT          327 a          360 c          324 g          287 t
ORIGIN      
        1 gcgcaagagc tgccgcggtc acgtcgagag ccagtccacc ttgcgactct accaaacgca
       61 aagccgcctc ccgatgatgg attatttctt cagccactga ctgagtaaac aactcacgcg
      121 ttgatgttgg tgcctcacgc acgacggctt tcaagtctcg atccgcaatc gtaactacaa
      181 gcggtaagtg gcgcggccta agcaggtgca gcgacgttag caactccttg gaaccctctt
      241 catcaaccag gtcagtgagc aggacaacaa gcgcgcgccg tttgctattc gccgaaataa
      301 attcaaacgc acgcgcgtat gacggctcaa tcatctcggg ctcgacaccg tacaaagctt
      361 caagcgccga ctctatatga tcacgacctc tactcggtgg cagaaaactt ttgattttcc
      421 gtccaaagac aaccagccct gcgttgtcac cagctcttgc cgcagctgaa aacaaggcca
      481 gcgtcgcatg aaccgccgaa tcaagtttcg tttcattctc gattcgggcg gtcattaaac
      541 gacccgcgtc gagtgcaatc aaaatcgttt ggtctcgctc gatctggtac tgccgggtag
      601 tgagctttcc ccgacgtgcg gtggcagtcc aggagatgtg tcgcaattca tcgccacgca
      661 catagtcgcg catcgattca aactcgcgtc cctcgccacg ccatgaagtt ttccggtggg
      721 acgaaactac tgaacgtgcg ccaagtgctt tcaactccgc ttcgcgtgca cggcgcatgt
      781 ttggatagac cttgacgaca atgggtgacg taactttcgt gtcgcaccat accaggtgga
      841 gtcttgatcg aaagcgtaat gcagtgtggc caaactcgaa acgacctcgt cttggaggcg
      901 tcagaccgta gatcaaagta acggttgatt gagcgtcaac attcatctca ccctctctga
      961 cgccattcag ggccatgaga ggcgggaatt catctttgac tattactttt atcggacggt
     1021 ttgaggcgtt ttgtatctgg atcctgactt cgttttctgc gccaaccgcg aagcgtccgc
     1081 caaactctcg agtgattgcg acacctttag gaagagtact ggttcgcgaa tcaaaaatag
     1141 ccacaaccaa aacaactaag tcataaccaa acgccagcca gattaaccat ggacgctgcc
     1201 acgacatagc gagaggaatg aaaccaagcg cgattagcag gtagaagact ttggtgaaga
     1261 caaaacgcac cggcggattc taggcgaaat aggtggtg
//
LOCUS       DATCGC010000716         1404 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_243364, whole genome shotgun sequence.
ACCESSION   DATCGC010000716 DATCGC010000000
VERSION     DATCGC010000716.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1404)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1404)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1404
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_243364"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1404
                     /locus_tag="VIJ87_06980"
     rRNA            <1..>1404
                     /locus_tag="VIJ87_06980"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          381 a          322 c          432 g          269 t
ORIGIN      
        1 cgacaagacc ctgacttgtt ggatagagat cctgagtacc acggggcccg agaaaccctg
       61 tgggaatccg ggacgaccac gttccaaggc taaatactca aactgaccga tagtgaacta
      121 gtaccgtgag ggaaaggtga aaagaacccc ggtgagggga gtgaaataga acctgaaacc
      181 gtacacctac aagcagcgag agggctatgc ccgcaaggga atgcctgatc gcgtgccttt
      241 tgcttaatga gcctgcgagt tatcttgcgc agcaaggtta aggcggaaag ccggagccgt
      301 agcgaaagcg agtccgaatt gggcattaag ttgcgtagat tagacccgaa gcgaagtgat
      361 ctacccatgg ccaaggtgaa tccgccgtaa caggcggagg aggcctgaac tgatgtttgt
      421 tgcaaaaagc tcggatgagc tgtgggtagg ggtgaaaggc taatcaaact tcgtgattgc
      481 tggttctccc cgaaataact agagggttag cctcgtgaca gccgtaacgg aggtagagca
      541 ctggatgggc taggggcgtt ccaacgctac tgaacccaac caaactccga atgccgttac
      601 tggacgcacg ggagttagac tacgggtgct aagatccgtg gtcaaaaggg aaatagccca
      661 gaccgtcagc taaggtccct aatcgtgagc taagtggaaa aggttgtaag atcgctcaga
      721 cagccaggag gttggcttag aagcagccat cctttaaaga gtgcgtaata gctcactggt
      781 cgagcgattt tgcgccgaaa atataacggg gcttaagttc atcaccgaag ctgcggactt
      841 gcctcgcaag aggtgagtgg taggggagca ttctcttcgc tgtgaaggtt gaccggcaag
      901 gacaactgga gcgtagagaa gagattatgc aggcataagt agcgataaac gatgtgagaa
      961 tcatcgtccc cgtaagccta aggtttcctg gcctatgttc gtcaggtcag ggttagtcgg
     1021 atcctaagcc gaggtcgaga gacgtaggcg atggaaaaca ggtcaacatt cctgtaccac
     1081 tgtgatgacg ttatcagcga aggggggacg cagaagggta ggcaccgccg ggtccctgga
     1141 atacccggtc caagcacgta ggcgggtctc gtaggcaaat ccgcgaggcc gttaacgccg
     1201 agatgtgatg gggaggccgc aaggccataa acggactgat cccatgctgc cgagaaaatc
     1261 ctcgtagcga gtcatgatag tgtccgtacc gcaaaccgac acaggtaggc cggtagaata
     1321 taccaagggg cgtgagagaa cactccctaa ggaactttgc aatctagccc cgtaacttcg
     1381 ggagaagggg tgcctcgcgt aggt
//
LOCUS       DATCGC010000717         1019 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_443948, whole genome shotgun sequence.
ACCESSION   DATCGC010000717 DATCGC010000000
VERSION     DATCGC010000717.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1019)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1019)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1019
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_443948"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            105..>1019
                     /locus_tag="VIJ87_06985"
     CDS             105..>1019
                     /locus_tag="VIJ87_06985"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEY5444206.1"
                     /translation="MSRALPVDYYKRIANRVISGVPKKYIRLLPFVELAALRRIRRGD
                     SEQSVLHERNELFQSKIPESAIKNVSALIGFDTSSWILTEKALGLGRQFFLDQSAAHP
                     LVNHDVYETLATQFPEWRSTSEGRLPKVLASERIEHQLASKIVVASSYTKRTLVNQGV
                     AEDKIVVNSFGVDLDAFHPPEDARRRSPLRFLFLGSVSAHKGIPLLIDAWRSLAGSNA
                     ELWIVGPIAEQHRVLIPDLPGLYVKGKYAFEDLPELLRQCDVLVFPSFSEGFGLVLLE
                     ALASGMPIITTENTAAPDLITNGREGFLL"
BASE COUNT          251 a          241 c          261 g          266 t
ORIGIN      
        1 ctcaatactc gcatcagctg gcgcgccagc tttatcgaca aggattgctc aatcagtttt
       61 ggactggaat cgctttatgc aaagaaagcc tttcaacaag agctttgagt cgtgcgctgc
      121 ctgttgacta ctacaaacgc atcgctaaca gggtgatttc cggagttcct aagaagtaca
      181 ttcgactctt gccgttcgtt gaattagcgg cgttgcgacg cattcggcgc ggtgattccg
      241 agcaaagcgt tttgcacgaa cgcaacgaat tgtttcaaag caaaattcct gaatcggcaa
      301 tcaagaatgt ctcggcgttg attggtttcg acacttcttc atggattctg actgagaagg
      361 cgctgggtct ggggcgacaa ttctttctcg atcaaagtgc cgcacaccca ttggtcaatc
      421 atgatgtcta cgaaacactc gcaacgcaat tcccggaatg gcgctcaacc tccgaaggcc
      481 gattgccaaa agtcctagcc agtgagcgga tcgagcatca acttgcctcg aagattgttg
      541 tcgcaagttc ctacacgaaa cggactctag ttaatcaggg agttgctgag gataagattg
      601 tagtgaattc gtttggagta gatctcgacg cttttcaccc acctgaagac gcgagaagga
      661 gaagtccttt gagatttctt ttcttgggat ctgtatcagc gcacaaagga attccgctct
      721 tgatagatgc ctggcgttcg ctggctggaa gcaatgccga actctggata gtcgggccaa
      781 tcgcggagca acatcgcgtg ttgatcccgg acctgccagg tctttacgta aaaggtaaat
      841 acgctttcga agacttgcct gaactgctga gacagtgtga tgtactggta tttccgagtt
      901 tttcagaagg tttcggactg gttcttcttg aagcgctggc gagcggaatg ccgatcatta
      961 ccactgaaaa cacagcggct ccggatttga ttacgaacgg tcgcgaagga tttctctta
//
LOCUS       DATCGC010000718         2491 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_177932, whole genome shotgun sequence.
ACCESSION   DATCGC010000718 DATCGC010000000
VERSION     DATCGC010000718.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2491)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2491)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2491
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_177932"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..364
                     /locus_tag="VIJ87_06990"
     CDS             <1..364
                     /locus_tag="VIJ87_06990"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY5444207.1"
                     /translation="GNAGKLQQVFTNLILNARDAIPDGGRITIVTSGADDGSLAVEIS
                     DTGVGIAPENVAKIYDPFYTTKGVGQGTGLGLAVTYGIVQEHTGRIGVESVPGHGTTF
                     RITLPTARVRARLQAVGD"
     gene            483..1910
                     /locus_tag="VIJ87_06995"
     CDS             483..1910
                     /locus_tag="VIJ87_06995"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY5444208.1"
                     /translation="MKTEKRNSKKGSVLVVDDEEIMREVLETLLSTEGYRVDLAKTGE
                     EGLEAYGRRAFDVVLLDVSMPGIGGLRALEEFLKMDPEAVIVMITAYATFDTAIAAWE
                     RGAFGCIRKPFQNEQITATIAAGIKRRRKEEERRTLRRAMSKAVDRGEIVGRSDLMQE
                     VFRLVEQVAPARSTVLITGESGTGKELIAKAIHEASTRVGRPFVTVNSSNIPSELLES
                     ELFGHTRGAFTGAVAAKKGLFEVADGGSIFLDEIGDIPPETQVRLLRVIQEREFTPLG
                     DTSPRRVDVRIVAATNIDLKEAVRQGSFREDLYYRLAVVPIELPPLRDRLEDILPLAQ
                     HFIQKYNEENSREVSEQMAPEVLALLESYSWPGNVRELENTIERAVVIAPGNEISKEC
                     LRPEISDPKSVVSASHGGASTGAVSEIGRGINFYEEVRRFEIDLIRRALEQTGGHQSR
                     AARLLGMNATTLNSKIKTYNINLRP"
     gene            1948..2409
                     /locus_tag="VIJ87_07000"
     CDS             1948..2409
                     /locus_tag="VIJ87_07000"
                     /inference="COORDINATES: protein motif:HMM:NF013777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY5444209.1"
                     /translation="MIRRDLDGCPITAALQMLGDKWTMLVVRELIRGPKRTMELLSDL
                     YPISSRTLLGRVRDMEKDGLIERSIYGGNSRHIQYALTDKGRLLLPLLESLRRLGLAM
                     ECNECEDRLERLGAYCDPCPHNEHRVSLEPPQEKRPSEPARRHHDDSIVLL"
BASE COUNT          601 a          599 c          714 g          577 t
ORIGIN      
        1 tgggaatgcc ggcaagctgc agcaagtgtt cacaaatctg attttgaatg cccgcgacgc
       61 gatacccgac ggcggtcgaa tcacgatcgt gaccagtggt gcagacgatg gttctttggc
      121 agttgagatt tctgacactg gtgttggcat tgcgccggaa aacgttgcca agatttatga
      181 tccgttctac acgacaaaag gagttggcca gggaacaggt ctagggcttg ccgtcaccta
      241 cggaattgtc caggagcaca ccgggcgtat cggagttgaa agtgtcccgg ggcatggaac
      301 aacattccgc atcacccttc cgaccgcacg tgtgcgagca cgtttgcaag cagttggcga
      361 ttaatgccgt cccggccgct acgagttact tgatgctggg cctggtggtt accaggcctt
      421 ttgttttacg tcacgaactc gcctaaacta gtccgttttc aagatcactc tgctcttatt
      481 acatgaagac cgaaaagcgc aactcgaaaa aaggttcagt actagtcgtc gacgacgaag
      541 agatcatgcg ggaagtgttg gaaacacttc tcagcactga aggatatcgc gtcgacctgg
      601 cgaagactgg agaagaaggt ttggaagcct acggtcggcg cgctttcgac gtcgtgctcc
      661 ttgatgtctc gatgccgggg attggtggtc ttagggcgct ggaagagttt ttgaagatgg
      721 atcctgaggc ggtgatcgtg atgataactg cctacgctac gtttgatact gccatcgcag
      781 cctgggagcg gggggctttc ggctgtattc gcaagccatt tcaaaacgaa cagatcacgg
      841 ccacgatagc cgcgggtatc aaacgacgtc gaaaggaaga ggaacgacga acacttcggc
      901 gggcaatgag caaagcggtt gaccgcggcg agatcgttgg tcgatcagat ctgatgcagg
      961 aagtgtttcg actcgtcgag caagttgctc cggctcgctc cacagtcttg atcaccggtg
     1021 aaagtggaac gggaaaggaa ctgatcgcga aagcaattca cgaggcgagc actcgtgttg
     1081 gtcgtccatt cgtcaccgtt aacagctcga acatcccctc tgaattatta gagtcagagt
     1141 tgtttggcca cactcgcgga gcctttacag gagcggttgc cgccaagaag ggtttgtttg
     1201 aagttgccga tggcggctca atcttcctgg acgaaatagg cgatattcct cccgagactc
     1261 aagttagact attgcgcgta atccaggagc gtgagttcac gccgttaggc gacacttctc
     1321 ctcgtcgcgt tgacgttcgc attgtcgcgg cgacgaacat cgatttgaaa gaagctgtgc
     1381 gacagggaag ttttcgcgaa gatctttact atcgccttgc tgtcgtaccg atagagttac
     1441 cacctcttcg agatcgcctg gaagatattc tgcccctggc ccagcatttc attcagaagt
     1501 acaacgaaga gaacagtcgc gaagtatcag aacaaatggc cccggaagtc ctcgcgttgc
     1561 tcgagtcata ttcttggccg gggaatgtac gcgaacttga aaacaccatc gaacgtgctg
     1621 tcgtaattgc tccaggcaat gagatctcaa aggaatgttt gcggccggaa atcagcgatc
     1681 ccaaatccgt agtttcagct tcgcatggcg gagcgagcac tggcgcggtc agtgagattg
     1741 gtcgtggcat caacttctat gaggaagtcc gacgctttga aatcgatctt attagacgag
     1801 cactcgaaca gaccggtgga catcaatcgc gagcagcccg tctgcttgga atgaacgcga
     1861 ctacgctaaa ctcgaaaatc aaaacgtaca acattaatct gcgaccatag tttcaaggcc
     1921 taaaccctaa gaccaaggcc caagcaaatg atcagacgcg atcttgatgg ttgtccaatc
     1981 actgcggcgc tccagatgct gggtgacaag tggacgatgc tggtcgttcg cgagttgatc
     2041 aggggtccca agcggacgat ggagttgctc agtgatctct atccgatcag tagcaggact
     2101 ttgctcgggc gtgttcgaga catggagaaa gacggtctaa tcgagcgttc tatctatggt
     2161 gggaattcca ggcacatcca atatgcgttg acggacaaag ggaggttgct gcttccgttg
     2221 ctggagtcac tgaggcgcct gggtttggcg atggaatgta atgagtgtga agatcgattg
     2281 gaacggttag gggcgtattg tgatccctgt ccgcacaatg agcatcgcgt aagtcttgaa
     2341 cctccgcagg aaaagcgacc aagcgagccc gcgagacgac accatgacga ttcgatagtg
     2401 ttgttgtgaa cgttagtgct tgctgctcag ctcttgttcg gaaccatgtg gccatcagca
     2461 gtaatgatcg ctttgtgatc cggcgtgatg t
//
LOCUS       DATCGC010000719         1061 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_177937, whole genome shotgun sequence.
ACCESSION   DATCGC010000719 DATCGC010000000
VERSION     DATCGC010000719.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1061)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1061)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1061
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_177937"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(258..374)
                     /gene="rrf"
                     /locus_tag="VIJ87_07005"
     rRNA            complement(258..374)
                     /gene="rrf"
                     /locus_tag="VIJ87_07005"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(579..>1061)
                     /locus_tag="VIJ87_07010"
     rRNA            complement(579..>1061)
                     /locus_tag="VIJ87_07010"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          271 a          288 c          245 g          257 t
ORIGIN      
        1 tgtttgaaga attctcatat tgggtatgtt agagactcga acggaattga caacgggaac
       61 caagtcacgt tgcgctgtta aatcaattct ctacgcaata tcgaagtcca cgttacaaac
      121 ctaccctgca acgcgtacgg ctgaggacaa caataatcta atcgacgcct tgactactgg
      181 cgcgaggtcg ctgaagcatg cgcggtcgga aatcaaaaag cccgcgagat taactctcgc
      241 gggcttttct taaataatcc cggcgacttc ctactctccc acgcagttac ccgcgcagta
      301 ccatcggctc caacaggctt aacttccgtg ttcgggatgg gaacgggtgt gaccctgtcg
      361 acaaaatcac cggaaaagtg attcgagatc tagaacgaag atctcagatt tcaaaggtct
      421 ttggtcttga gcctttggtc tttgttcgtt tcgctagcag ttaatctcag cgaaggaatc
      481 aaaggccaaa gacccaagtc caaagaccaa aaaatcgaat atgactgtta aggcaagtct
      541 tcgcgcaagc gcgagtgctt gttgcttgag taaattttat ggtcaagcca agggactgat
      601 tagtagtggt caactgagca cattactgca cttacatatc caccctatca acctcgtggt
      661 cttcgaggag tctcactggc agaaataatc ttgggtctgg cttcacgctt agatgcattc
      721 agcgtttatc catgctccac atagctaccg agcgctacgg ctggcgccat aactcgtaca
      781 ctagaggtgg atccatcccg gtcctctcgt actaaggaca gattccctca attctgctcc
      841 gcccacacca gatagggacc gaactgtctc gcgacgttct aaacccagct cacgtaccgc
      901 tttaattggc gaacagccaa acccttggga ccttcttcag ccccaggatg cgatgagccg
      961 acatcgaggt gccaaaccct gccgtcgatg tgaactcttg ggcaggatca gcctgttatc
     1021 cccggcgtac cttttatccg ttgagcgacg gcccttccat a
//
LOCUS       DATCGC010000720         1147 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_209512, whole genome shotgun sequence.
ACCESSION   DATCGC010000720 DATCGC010000000
VERSION     DATCGC010000720.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1147
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_209512"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1060
                     /locus_tag="VIJ87_07015"
     CDS             <1..1060
                     /locus_tag="VIJ87_07015"
                     /inference="COORDINATES: protein motif:HMM:NF000689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004325 - ferrochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0006783 - heme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HEY5444210.1"
                     /translation="SQKSTTISATGVTKGNLKSKMNSYDALLIVSFGGPEGMDDVISF
                     LENVLRGRNVPRERMLQVAHHYELFDGVSPINGQNRKLIAALKVELEANGPHLPIYWG
                     NRNWHPLLADTIQQMANDGIKHALAFVTAAYSSFSSCRQYRQNIIDAQAAVGPNAPQV
                     DKLRAFYNHPLFIKANVDQIRASLQQFPSATSPDLVFTAHSIPESMANNCDYAAQLSE
                     TARLIAEELGVDRWQLTYQSRSGSPSQPWLGPDVCDHLRQLRTDGATGVVVSPIGFVS
                     DHMEVIYDLDIEAQKVAKEIGLKMVRAATAGTHPAFVEMIRELILERTADITPRALGN
                     RGPSNNVCPVDCCIEKQP"
BASE COUNT          271 a          298 c          311 g          267 t
ORIGIN      
        1 gtcccagaag agcacgacca ttagcgcgac gggtgttact aaagggaatc tcaaaagcaa
       61 aatgaactct tacgacgcac ttctgatcgt ttcttttggt gggcctgaag gaatggatga
      121 tgtgatatca ttccttgaaa atgtgctgcg cggtcgcaat gtcccgcgtg agcgcatgct
      181 tcaggtcgca catcattacg agctatttga cggtgtcagt ccgatcaatg gccagaatcg
      241 aaaactgatc gcggcgctca aagttgagtt agaagccaac ggcccgcacc ttccgatcta
      301 ctggggcaat cggaactggc atccactttt ggctgacacg attcaacaaa tggcaaatga
      361 tggaatcaag cacgcgcttg catttgtcac ggcagcgtac agttcattct cgagttgccg
      421 gcagtatcga caaaacatca ttgatgccca agcggcagtt gggccaaacg ccccacaagt
      481 cgacaagctt cgcgcctttt acaatcatcc actctttatt aaggccaacg tcgatcagat
      541 acgcgcctcg ttgcagcagt ttccgagtgc gacgtctcct gatctggttt tcactgcaca
      601 tagcattcct gagtcgatgg ctaataactg tgactacgcc gctcaattgt ctgagaccgc
      661 gcgtctgatc gccgaggaac tgggcgtcga tcgttggcaa ctcacttatc aaagccgcag
      721 tggctcgccg agccaaccat ggctgggccc tgatgtttgc gatcacttga gacaactaag
      781 aacggacggc gctactggtg tcgtggtttc gccaatcggt tttgtttccg atcacatgga
      841 agtgatctac gatctcgaca tcgaagctca gaaggtggca aaagagatcg gattgaagat
      901 ggtacgggca gcgacagcgg gaacgcaccc ggcgtttgtg gagatgattc gcgagttgat
      961 tttggaacga acggccgaca tcactccgcg cgctcttgga aaccgtggtc cgagtaacaa
     1021 cgtctgcccg gttgactgct gcatcgagaa acaaccttga tagttatgcg gctgtgccgc
     1081 ctgccgtgcg gaaagcctct ggctttccgt gacttcattt agagagggag aggctgcgcc
     1141 tcgtgcg
//
LOCUS       DATCGC010000721         1630 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_276172, whole genome shotgun sequence.
ACCESSION   DATCGC010000721 DATCGC010000000
VERSION     DATCGC010000721.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1630)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1630)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1630
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_276172"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1589)
                     /locus_tag="VIJ87_07020"
     CDS             complement(<1..1589)
                     /locus_tag="VIJ87_07020"
                     /inference="COORDINATES: protein motif:HMM:NF039503.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5695 domain-containing protein"
                     /protein_id="HEY5444211.1"
                     /translation="MRNNNIGPYLMLTPREDTKFEYWDAQRLPPTSIGNPVGQSQPTG
                     VGYRVYIHSAAAGTEAKAQGTKWRQPNTSLKLAPGEARSYGFKLHWVNNYDEVRQVLV
                     DENLIDVHVVPGMTVPSDLFARIALRTKQTIQAVEGEFPEQTKIESLGTKGDFHFYQV
                     TFKRLGENRLTVHYGNSKHMFLEFFSTEPLETLIKKRAAFLARSQHRDPSKWYNGLVT
                     DWNMDSKVLLSPDNYDRIQSWRIYAVTCDDPGLGKPAYLASKNAEFPNQNEVEALDYY
                     IKNFVWGGLQQTDSEPYPYAIYGIPDWKTNRDSIDPGRNGQKHIWRIYDYPHVVLLYH
                     SMYRIAKNYPEIKTLLTAEQYLHRAYGTAVALFTVPMQVEHWSAYRTGLYNELVIVSL
                     ISDLETAGLTNEANTLRNHWEQKVKTFVNGQLNLFQSEYAFDSTGFEATHALARYALQ
                     IADKPGDSKSGISLENAERFMRLQLASNIFCRGWPEPAYYLLGSDYRGNGGNSFTLSY
                     MSQMGGWSVLDYALNYAPKPD"
BASE COUNT          402 a          393 c          404 g          431 t
ORIGIN      
        1 cagtcgggct tgggagcgta gttgagagcg taatcaagaa ccgaccagcc tcccatttgc
       61 gacatataac tcaaggtgaa tgaattgcca ccattacctc tatagtcact acctaacaag
      121 tagtaggcag gctcaggcca ccctcgacaa aaaatattcg acgctaattg cagtctcatg
      181 aatcgttcgg cgttttcgag agagataccc gacttgctat cgcctggttt gtcggcaatt
      241 tgaagcgcgt acctggcaag tgcgtgggtc gcttcgaaac ctgttgaatc aaacgcatat
      301 tctgattgaa agagattgag ttgaccgttg acgaatgtct tcactttctg ttcccagtga
      361 tttcgcagtg tgtttgcttc gttcgtcagg ccagcggttt cgagatcgct gatgagactg
      421 actatcacaa gctcgttata aagaccggtg cgataggcag accagtgttc gacttgcatc
      481 ggcacagtaa agagcgcgac agcagtgccg tatgcgcgat gcaggtattg ttcagcagtt
      541 aatagagtct tgatttcagg atagtttttt gcgatgcgat acatcgagtg atatagcaac
      601 acgacgtgag ggtagtcgta gatgcgccaa atatgttttt ggccgttacg cccgggatca
      661 atgctgtcgc gattagtctt ccaatcggga attccgtaga tcgcatacgg gtaaggctcg
      721 gaatcagttt gctggagacc accccaaaca aaattcttaa tgtaatagtc gagcgcttcg
      781 acttcattct ggtttggaaa ctcggcgttt ttcgacgcga gatacgccgg ctttccaaga
      841 cctggatcgt cgcaggtcac ggcatagatc cgccaactct gaattcgatc atagttgtct
      901 ggactcagta gtacttttga gtccatgttc caatcagtga ctaatccgtt gtaccacttc
      961 gatggatctc tatgttggct acgagccaga aacgcagcgc gtttcttaat caaagtctcc
     1021 agcggctcag ttgaaaagaa ctcaagaaac atgtgcttcg agtttccata gtggaccgtc
     1081 aaacggtttt ccccgagtcg cttaaatgtc acctggtaaa aatggaaatc gccttttgta
     1141 ccgagcgatt caatcttggt ctgttccgga aactctcctt caaccgcctg aatggtttgc
     1201 tttgtgcgga gagcaatacg agcaaacaaa tccgatggca cagtcatgcc cggtacaacg
     1261 tgaacatcga taagattctc gtccactaaa acctgtcgga cctcatcgta gttattcacc
     1321 caatgcaatt tgaagccata ggaacgggct tcaccgggcg caagtttgag tgacgtattt
     1381 ggctgccgcc actttgttcc ttgcgctttt gcttcagtcc ccgctgccgc cgagtgaatg
     1441 taaacgcgat agcccacgcc ggttggttga gactgaccga ctggatttcc aatcgacgtt
     1501 ggaggcaagc gttgcgcatc ccaatactca aacttggtgt cttcgcgcgg agtcaacatt
     1561 agataaggac caatgttgtt gttgcgcatc cagaacatgt aagagctgta accggcaacc
     1621 aggctgtgtt
//
LOCUS       DATCGC010000722         1440 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_177968, whole genome shotgun sequence.
ACCESSION   DATCGC010000722 DATCGC010000000
VERSION     DATCGC010000722.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1440)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1440)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1440
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_177968"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(249..1238)
                     /locus_tag="VIJ87_07025"
     CDS             complement(249..1238)
                     /locus_tag="VIJ87_07025"
                     /inference="COORDINATES: protein motif:HMM:TIGR02824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase"
                     /protein_id="HEY5444212.1"
                     /translation="MKAVVITKPGGVDVLEIREVETAPPPTADRVRVRVHASALNRAD
                     VIQRKGFYPAPPGAPSDIPGLEFAGEVDLIGPEVREWKPGERVFGICGGGAHAEYVIV
                     PASHLAEIPSNLSWAEAAAVPEVFITAHDALFTQAQLQPGEFVLIHAAGSGVGTAASQ
                     LAKVVGAKAIGTSRTADKLERAKEYGLANSIVVVDPLAIVDAIKEYTAGRGVDVVLDL
                     VGAGYLEANLKAMAVKGRMIQVGTTSGSKATLDFGVVMSKRLTIKGTVLRARSVEEKA
                     TATRLFARHVVPLLADGSVKAVIDRTYKLSEVREAHTRMESNENFGKIVLMVT"
BASE COUNT          337 a          427 c          343 g          333 t
ORIGIN      
        1 aagcggttgc gtcccaaagt ccagggttgc cgctttgggc taccctggat aagcgttgga
       61 tcaagagttc aaccgcaacg cggttgcgcc gtctacgcta cttgagtcaa tcaacaacag
      121 ccgcttgcct catcttccta ctgatggatt gtgcaccgtc tccaaacgtc gcaagactgc
      181 aatggacgca accgcgttgc ggttagacaa gaccaaagac ccaagaccta agacccaagg
      241 ccaaagacct aagtgaccat caacacaatc tttccaaagt tttcattcga ctccatccga
      301 gtatgcgctt cacgaacttc gctcagctta tatgttctat caatcacggc cttcacagat
      361 ccatccgcca acaacggcac cacatgcctc gcgaaaagtc gtgtcgccgt cgccttctct
      421 tcaactgaac gcgctcgcag cactgtgcct ttgatagtca gccgttttga cattaccact
      481 ccaaaatcca gggtggcctt cgaacctgaa gtcgtgccaa cttgaatcat gcgtcctttg
      541 acggccatcg cttttaagtt tgcttccagg tagccggcgc caaccaggtc cagtacgaca
      601 tccactccgc ggccagccgt gtattcctta atagcatcga cgattgccaa tggatctacc
      661 acgacgatcg agttggccag tccgtattct ttcgcacgtt caagtttatc tgcggttcgt
      721 gacgtcccaa tcgcttttgc tccgactact tttgccagtt gcgacgcagc ggttccgaca
      781 cccgatcccg ccgcatgaat taatacaaac tcaccaggct gtaattgggc ctgggtgaac
      841 aatgcgtcgt gcgccgtgat gaaaacttca ggaacagcgg cagcttcagc ccaactcaaa
      901 ttcgagggaa tctctgcaag atgacttgcc ggaacaataa cgtattcagc atgagcaccg
      961 ccgccgcaaa ttccaaacac acgctcgccc ggtttccact cccgcacttc cggaccgatc
     1021 agatcaactt caccggcgaa ctctaatccg ggaatgtcgc ttggagctcc cggcggtgca
     1081 ggataaaaac cttttcgctg aatcacgtcg gcccgattta aggcagacgc atgaacgcgt
     1141 actcgtacgc gatcagctgt tggtggtggt gctgtttcaa cctcgcgtat ctcgagtacg
     1201 tcaacaccac cgggctttgt tatcacgact gccttcataa gtgctccttc atttcaaagg
     1261 gtggcgagaa cgtctcagtg ggtcgaacaa gctgggaagg gggcaagcgt aaattaggac
     1321 gctttagctt attgacccct gagcgccccg ctgagtcgcc gtatgagaat cttaacttgt
     1381 aacaggtgaa ccgcagcggg ggcacgctcg gggctagtcc ttgaggagtc caacttttcg
//
LOCUS       DATCGC010000723         1358 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_43509, whole genome shotgun sequence.
ACCESSION   DATCGC010000723 DATCGC010000000
VERSION     DATCGC010000723.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1358)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1358)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1358
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43509"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..882)
                     /gene="galT"
                     /locus_tag="VIJ87_07030"
     CDS             complement(<1..882)
                     /gene="galT"
                     /locus_tag="VIJ87_07030"
                     /EC_number="2.7.7.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008108 - UDP-glucose:hexose-1-phosphate
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0006012 - galactose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-phosphate uridylyltransferase"
                     /protein_id="HEY5444213.1"
                     /translation="MTWEERWHPLREEWVIIAAHRQHRPWNGETLEHDRSELPGYVAD
                     CYLCPGNLRVSGNRNENYSGTFVFDNDHPCVGHNAPTDLSRPASLFRNQPARGIARVV
                     CYSPKHNLSLAELESSEIETLLQVWQQQYLDLSSRDDINHVLIFENNGEAVGVSNPHP
                     HCQIYATNFVFKTIETEARLSQQHLSDTGRVLFQDILQAELDDGRRIICENDSAIAFL
                     PYFARYAYEVYVAPKQTHASIATLRKGELRDFSSALKCLLVRLDNLWRMPFPYVMTLH
                     QSPTTGQPNAGFHFHIEI"
     gene            complement(903..>1358)
                     /locus_tag="VIJ87_07035"
     CDS             complement(903..>1358)
                     /locus_tag="VIJ87_07035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444214.1"
                     /translation="EVDLGFSGALRTAATILADDPIFGRFCFGGDWRATPAGIDVIPK
                     DGLRRRFHALLNDQRVHMILDGDRYAASSPIELKEDFSQVRFRLESDNPRNHSTTLRV
                     SGLPSGSYVLQIGQKTISNFTMGDNVESRVEVPVDAGSRKGTIALIRNH"
BASE COUNT          357 a          348 c          330 g          323 t
ORIGIN      
        1 gatttcgatg tgaaaatgga agcccgcatt aggctggcca gtagtaggcg attgatgcaa
       61 ggtcatcaca tagggaaagg gcatccgcca aagattatcc aacctgacaa gcaagcattt
      121 aagggccgac gaaaaatcgc gcaactcccc ctttcgcaac gtggcaatgc tcgcatgcgt
      181 ttgtttcgga gcaacgtaga cttcataagc atagcgagca aagtacggaa gaaatgcgat
      241 cgctgaatca ttctcacaaa ttattctgcg gccatcgtcg agttcggctt gcagaatatc
      301 ctgaaacaat acgcgtccgg tatccgaaag atgttgctgc gagagccgcg cttcagtttc
      361 gatcgtcttg aagacgaaat tagttgcgta tatctgacaa tgaggatgag gattggaaac
      421 acccactgct tccccgttgt tctcgaagat caagacgtgg ttgatatcat ctcgacttga
      481 aaggtccagg tattgttgtt gccaaacctg caacagtgtt tcgatctcag aactttcaag
      541 ttctgctaat gacaaattgt gtttggggct ataacaaacg acgcgcgcga tgcctcgtgc
      601 aggctggttt cgaaagagac tcgcaggtcg agacaaatct gttggcgcgt tgtgaccaac
      661 acaggggtga tcgttatcaa agacaaaagt cccgctatag ttctcattcc tgttgccgct
      721 aacccgaagg tttccaggac acaaataaca gtcagcaaca tagcctggta attccgagcg
      781 atcatgttca agtgtttcgc cgttccaggg ccgatgctgc cggtgtgcgg caataattac
      841 ccactcctca cgcaacggat gccatcgttc ttcccaagtc atactcttaa tccagactca
      901 atttaatgat tgcggatcag cgcaatcgtg cccttcctgc taccggcatc aaccggaacc
      961 tcgactcgac tctcaacatt gtcacccatc gtaaaatttg aaatggtttt ctggccgatt
     1021 tgcaaaacgt aagatcccga cggcaatccg gagacacgaa gcgtggtcga atggttcctc
     1081 ggattgtcgc tttccagtct gaatcgaact tgagagaaat cctctttcaa ttcgatggga
     1141 cttgaagccg cataacgatc gccatccaga atcatgtgca ctctctgatc gttcagcaag
     1201 gcatgaaaac ggcgacgaag accgtctttc ggaatcacgt cgatacccgc aggcgtcgcg
     1261 cgccagtcgc ctccgaagca gaatctaccg aagattgggt cgtccgcaag aatagtggcg
     1321 gccgttcgca gagcgccgct gaatccgaga tcaacttc
//
LOCUS       DATCGC010000724         1498 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_209549, whole genome shotgun sequence.
ACCESSION   DATCGC010000724 DATCGC010000000
VERSION     DATCGC010000724.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1498)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1498)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1498
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_209549"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1498
                     /locus_tag="VIJ87_07040"
     CDS             <1..>1498
                     /locus_tag="VIJ87_07040"
                     /inference="COORDINATES: protein motif:HMM:NF014850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycoside hydrolase family 2 TIM barrel-domain
                     containing protein"
                     /protein_id="HEY5444215.1"
                     /translation="DGQRIDLDDSSWRKLNLPHDWSIEGEFAEKNPAGTGGGALPGGT
                     GWYRKSFIVPATAKGKLLFVDFDGVYRKGEVWLNGHYLGKRPYGYSSFQFELTPYINF
                     GAKNLIAVKVDNSEQPNSRWYSGSGIYRNTWLTTIDPIHVDHWGTWINTPEVNEQLAK
                     VAIQTTVINQSQQDLSLTVTTILYDSAKREVARSSTPASMKKGESSIAGQTLSISNPI
                     LWSDDKPYLYKAISQVERNGRIVDRYETPFGVRYFSFDINKGFSLNGKHVKIRGVCNH
                     HDLGALGAAVNKRALERQLEMLKAMGVNGIRTSHNPPAPELLELADEMGFIVMDEAFD
                     IWKKEKTKFDYHLDWDEWHKRDLEDLILRDRNHPSVIIWSIGNEVAEQWGSHPEAGII
                     SKELVSIVKNLDQTRPITAACNFVSTDNSLITAGNLDLVGTNYAHAEMHKFPQMFPNR
                     PLIYTETTSALATRGSYDMPSDQIRRWPRKWDEPLKDGNADFSCSAYDN"
BASE COUNT          399 a          389 c          378 g          332 t
ORIGIN      
        1 cgatggtcaa cgcatagacc tggacgactc cagttggcgc aagctcaatc ttcctcacga
       61 ctggagcatt gaaggtgaat tcgctgaaaa gaatccggca ggcactggcg gtggcgcgct
      121 cccaggcggc accggttggt atcgaaagag ttttattgtg ccggccactg cgaaagggaa
      181 gttgctcttc gttgatttcg atggtgtcta tcgaaaggga gaagtctggc tgaatggcca
      241 ctacctaggc aaacgtcctt atggttacag ctcgtttcag tttgagctaa ctccctatat
      301 caacttcggc gcaaagaatc tgattgccgt caaagtcgat aactcggaac aaccaaattc
      361 acgttggtat tcagggtccg gtatctatcg caacacgtgg ctgacaacca tcgatccaat
      421 ccatgtcgat cactggggta cctggatcaa tactccggaa gttaacgagc agttggcgaa
      481 agttgctatt caaaccacgg tcatcaacca atctcaacag gacctttcgc tgaccgtcac
      541 cacgatactc tacgattccg caaagcgaga agtagctcga agttctacgc cggcttcaat
      601 gaagaagggc gagagtagta tcgccgggca aacgctttcc atctcgaacc cgattctctg
      661 gtccgacgac aagccttacc tctacaaagc aatctctcaa gttgaacgta acggaaggat
      721 agttgatcga tacgagacac cattcggtgt gcgctacttc tcattcgata tcaacaaggg
      781 gttctcgctc aatggcaagc acgtgaagat tcgcggagtt tgtaatcatc acgatcttgg
      841 agcgttgggc gcagcagtta acaaacgcgc gcttgaacga caacttgaaa tgcttaaggc
      901 aatgggcgtg aatgggatcc gcacctcgca taatccgccc gcccccgaat tactcgagtt
      961 ggccgacgaa atgggtttca tcgtgatgga tgaggccttc gacatctgga agaaagaaaa
     1021 gaccaagttt gactaccacc tcgactggga tgagtggcac aaacgcgatc tggaagacct
     1081 gattctccgc gatcggaacc atccaagtgt gatcatctgg agcatcggga atgaggtcgc
     1141 ggaacaatgg gggagccatc ccgaagcagg catcatcagt aaagaactgg tgagcatcgt
     1201 caagaattta gatcaaaccc gaccgatcac cgcggcctgc aactttgttt caactgacaa
     1261 cagtttgata actgcaggca atcttgacct ggtgggaaca aactatgcgc acgcagagat
     1321 gcacaagttt ccccagatgt ttcccaaccg tcccttgatc tacacggaga caacttcagc
     1381 cctggcaact cgcggaagtt atgacatgcc ttcggatcaa attcggcgct ggcctcgcaa
     1441 gtgggatgaa cctctcaagg atggcaacgc tgacttctcc tgttcagcct acgacaac
//
LOCUS       DATCGC010000725         1222 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_312961, whole genome shotgun sequence.
ACCESSION   DATCGC010000725 DATCGC010000000
VERSION     DATCGC010000725.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1222)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1222)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1222
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_312961"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1011
                     /locus_tag="VIJ87_07045"
     CDS             <1..1011
                     /locus_tag="VIJ87_07045"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF012403.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEY5444216.1"
                     /translation="FDEAHYLKAPRARRTRASRRLVKKASSVIGLSGTPLTNRPIELW
                     SILRIIRPDLFPSREEYAWAYCKPRYTPWGWRYDGATNLKQLNRILRSECMIRRLKKD
                     VLLELPAKTRRIVPFRLASYKEYRRADNEFLVWLKETSPSRAMRAKKSLALVKVGYLL
                     RLVAKLKMEWTKQWIEEFFIAHPGEKLVALTMHTFVIDQLKERFPSSVVIDGRVVGRK
                     RDETVRKFQSNRRVNLLLGNWKAAGVGITLHAASNAAALDFPWSPGDLLQGEDRIHRI
                     GQKKKVVIHYLTALGTIEEKLVRILRKKSDILDAVLNGEEDAQSFNIFEDLLEIIRTE
                     KL"
     gene            1008..1163
                     /locus_tag="VIJ87_07050"
     CDS             1008..1163
                     /locus_tag="VIJ87_07050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444217.1"
                     /translation="MKSELQHHKGVLFFKGIPIDTKNQFKAACARKGQTMQEAIVKLM
                     KQYVLRK"
BASE COUNT          311 a          288 c          358 g          265 t
ORIGIN      
        1 tttgacgaag cgcattacct gaaggcgccg agagcgagac gaaccagagc cagccggagg
       61 ctggtcaaga aagcttcttc ggttatcggg ctgagcggga ctccgttgac gaaccggccg
      121 attgagctct ggtccatctt gcgaatcatc cgccccgatt tgtttccatc ccgggaagag
      181 tatgcttggg cgtattgcaa gccgcgatat actccgtggg gctggagata cgatggcgca
      241 acgaacttga aacaactgaa ccggattctc cgctcggagt gcatgattcg ccggctcaag
      301 aaagacgtgc tgctggagct gccggccaag actcggcgta tcgttccgtt ccggctggcg
      361 tcttacaagg aatatcgtag ggctgataac gagtttctgg tctggctcaa agagaccagc
      421 ccatcccgag cgatgcgggc gaagaagagt ctggcgctcg tcaaagtcgg atatctgttg
      481 cggctcgtag ccaagttgaa aatggaatgg accaagcaat ggattgagga attctttatc
      541 gcgcaccccg gggagaaact tgtggcgttg accatgcata cttttgtcat cgaccaattg
      601 aaagagagat tcccgtccag cgtcgttatc gatggccgcg tagtcgggcg caagcgggac
      661 gagactgtac ggaagttcca atccaatcgt cgcgtcaatc tgctgttggg aaattggaaa
      721 gcggctggag tcggaattac tttgcatgcg gccagcaacg cggcagctct ggacttccct
      781 tggagtcccg gcgacttgct gcagggcgag gaccgtatcc atcgtatcgg gcaaaagaag
      841 aaagtcgtca ttcattactt gacggcgtta gggactatcg aagagaagct ggtgcgaatt
      901 ctgcggaaga agtcggatat cttggacgca gtattgaacg gagaagaaga cgctcagagc
      961 ttcaatatct tcgaagactt gctggagata atacgaacgg agaaattatg aaatctgaac
     1021 tgcagcacca caaaggtgtt ttgtttttca agggtatccc gatagatacc aagaaccaat
     1081 tcaaagcggc ttgcgctcgc aaggggcaga cgatgcaaga ggctatcgtc aagctgatga
     1141 agcaatacgt ccttaggaaa tgaccatcca ggagctattg tctggcgcgg ggattgaata
     1201 cttagaatcc ggacacaacc at
//
LOCUS       DATCGC010000726         1740 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_79713, whole genome shotgun sequence.
ACCESSION   DATCGC010000726 DATCGC010000000
VERSION     DATCGC010000726.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1740)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1740)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1740
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79713"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1327
                     /locus_tag="VIJ87_07055"
     CDS             <1..1327
                     /locus_tag="VIJ87_07055"
                     /inference="COORDINATES: protein motif:HMM:NF012688.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase"
                     /protein_id="HEY5444218.1"
                     /translation="IEWDERLSYEMFEIAGIEVNSNSHLQVHALLFDEWKLPRRMGVG
                     EEELTALLNLKNGVKYPPHRAWIEKCLEQRRVRKTISTYLMAIPDYDGKMRTTCFMCL
                     ETGRTSTSQQNPPIRPLVDTVGAGKKTDMKVMGTAFQVFTKHGDIGGDVRSMYEPEPG
                     YVFVQLDSSQAEARVVFNLATDEQALKDIDEHDYHALTASWFFGGVESDYSKKVLGYE
                     SPIRFAGKTLRHAGHLGAGARRASTELNTQARKYKIPITIHEGIAERALKIFHAKQPR
                     IQQVFHKDVIECLKQNRQLVAPLPWGIDAERGGVRIFYERWGDDLFREALAYLPQRAV
                     TDNTKAAGIRIKRKCPDARIILEAHDALLFAVRIEHLDEFIPLAKKEMERAINFTNCS
                     LPRRYLKIPCDVEIGENYKDLHKFNIRVIETPEYMRTPKSITEQFMVQE"
     gene            1330..>1740
                     /locus_tag="VIJ87_07060"
     CDS             1330..>1740
                     /locus_tag="VIJ87_07060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444219.1"
                     /translation="MDFTEVVGRIKNKTIEKDGHWLFQGTRPKGYGQIRFQGKMVNIH
                     RLSAACYLGLDMDDRTKQANHKIECRHKNCWNPEHLYIGTESENKADRFHKDEEHLGN
                     QYTRATHCIHGHEFTEENTYDYGHGRKCRQCEKDR"
BASE COUNT          536 a          355 c          434 g          415 t
ORIGIN      
        1 cattgagtgg gatgagcgtc tgtcctacga gatgttcgag atagccggca tcgaagtcaa
       61 ttccaattcc cacctacagg ttcatgcact tctattcgat gagtggaagt tacctcgtcg
      121 gatgggtgta ggtgaggaag agttgaccgc actcctgaac cttaagaatg gcgtcaagta
      181 tccgccacat cgcgcatgga ttgagaaatg cctagagcag cgaagggtaa ggaaaactat
      241 cagcacctac ctgatggcta ttccagacta cgacgggaag atgcggacta catgtttcat
      301 gtgtctcgaa acaggtagga cgagtacgag tcagcagaat cctcccatac gtccattggt
      361 ggatactgta ggagcaggca aaaagacaga catgaaggtg atgggcacgg cattccaagt
      421 gttcactaag catggtgata ttggtggtga tgtgcgttcc atgtatgagc ctgaacctgg
      481 ctacgtgttc gtgcagttgg actcgtcaca ggctgaagca agagtagtct ttaatctagc
      541 cacagatgaa caagcattaa aggacataga tgaacatgac taccatgctc ttactgcttc
      601 ttggtttttc ggtggcgtcg aatctgatta ttctaagaaa gtactggggt atgagagtcc
      661 gattcgattt gctggtaaga ctctccgaca tgcaggacac cttggagcgg gagcaagacg
      721 cgccagtacg gagcttaaca ctcaggcaag aaagtataaa atccctatca ccatccatga
      781 gggaatcgca gaacgggcgc taaagatatt ccatgctaag cagcctcgta tccaacaggt
      841 gttccataag gatgtgatag aatgtctaaa acagaatcgt caactggtag caccgctacc
      901 ttgggggatt gatgcagaac gtggtggcgt acgtatattc tatgagcggt ggggtgatga
      961 ccttttccga gaagctctgg cctatctccc ccaacgagct gttactgata ataccaaagc
     1021 agctggcatc cgaattaaaa gaaaatgtcc agatgcgcga attattcttg aggcacatga
     1081 tgcacttctg ttcgctgtta gaattgaaca tctcgacgaa ttcatccctc tagctaagaa
     1141 ggagatggag cgcgccatca atttcactaa ctgttcactt cctcgtcgct acttgaagat
     1201 tccatgtgat gtagagattg gggagaacta caaggactta cacaagttca atatacgggt
     1261 aatcgaaaca cctgaataca tgcgcactcc aaaatctatc acggaacaat tcatggtgca
     1321 ggagtagtta tggactttac agaagtagta gggagaatta agaataagac tatagagaaa
     1381 gatggacatt ggctatttca gggaactcgt ccgaagggat acggacagat tcggtttcaa
     1441 ggtaagatgg taaatataca cagattatcg gcagcatgct atctcggatt agacatggat
     1501 gatagaacaa agcaggctaa tcacaagata gaatgtagac acaagaattg ctggaatcct
     1561 gaacatctct acattggaac agaatctgaa aataaagcag atagattcca taaagatgaa
     1621 gaacacctag gcaatcaata cactcgtgca actcattgta ttcacggaca tgagttcact
     1681 gaagaaaata cttatgacta cggtcatggt aggaaatgca gacaatgtga gaaagacaga
//
LOCUS       DATCGC010000727         2758 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_342780, whole genome shotgun sequence.
ACCESSION   DATCGC010000727 DATCGC010000000
VERSION     DATCGC010000727.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2758
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_342780"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..482)
                     /locus_tag="VIJ87_07065"
     CDS             complement(<1..482)
                     /locus_tag="VIJ87_07065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444220.1"
                     /translation="MKSSPRVLIALTLGLLISLSLIQRSPAAKAAPLDLSGEIDGAPY
                     RIRVPEVWNGTLLIFAHGYRDKADHPGEVDNRNADVAPNAALEAPLLAQGFALAGTAY
                     KDNGWAIKDAIQDVKNLAVFFRDNVAQPQRTIIVAASLGTFVGFKSMEQFGGIYDGAL
                     "
     gene            1444..2088
                     /locus_tag="VIJ87_07070"
     CDS             1444..2088
                     /locus_tag="VIJ87_07070"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEY5444221.1"
                     /translation="MSAEQAVDLVRFLPACPSKPIHVTAAETETPQSTDYELAQKAAH
                     GDMGAFEDLYQRHNRRVYSLCLRMTGSVSEAEDLAQEVFIQLFRKIGSFRGESAFTTW
                     LHRLTVNQVLMHFRKRGVRMESTTEDGETPIQIVKGTENPNAMPVVDRIALDKAIAQL
                     PPGYRTVFTLHDIEGHEHEEIARMLGCSVGTSKSQLHKARMKLRGLLRQQNKPE"
     gene            2237..>2758
                     /locus_tag="VIJ87_07075"
     CDS             2237..>2758
                     /locus_tag="VIJ87_07075"
                     /inference="COORDINATES: protein motif:HMM:NF024881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HEY5444222.1"
                     /translation="MNCETCQELIHDLIDGTISRTDELTLNTHLQECLDCENVRQELS
                     SIVGFCRSHRGEYEAPPNPQALWLRIQNVVDAEPSRSGVSGVATHKSFLGGLLNRSWE
                     LSFPQLASLTAAIVLCVSLITVVGVRRWGNGGPVELQTLARGDSITERVWQRQQVINY
                     WNQRVELNKTRWSP"
BASE COUNT          689 a          675 c          752 g          642 t
ORIGIN      
        1 cagagtgcgc cgtcgtaaat tccgccaaat tgttccatgc tcttgaaacc gacgaaggtt
       61 cccaatgaag cagcgacgat gatggtcctt tgtggctgcg ctacgttatc gcggaagaaa
      121 acagcaagat tcttaacgtc ctgaatcgca tccttgatgg cccaaccatt gtctttgtaa
      181 gcagtcccag ctagggcaaa accttgagcg agcagcggag cttccagtgc cgcatttggc
      241 gcgacgtcgg catttcgatt atcaacttcg ccgggatggt cggccttgtc acgatagccg
      301 tgcgcaaaga taagcagcgt tccattccac acttccggca ctcggatccg gtaaggcgcg
      361 ccgtcgatct cgccagacag atcaagcggt gcagctttgg ccgccggtga acgctgaatt
      421 agtgaaagcg agattaataa accgagggtt agtgcaatga ggactctcgg actgcttttc
      481 attctgccgt cccccttttc tttggctgga atctttggct ggaaaaatcg ggcgaggcgt
      541 aagactatca ccggaaagcg ctcggtcgca atacgccgat gtagtttggg agaggcgcca
      601 gagcagcgcc taattcagag tttggtgcct ttgaaaattc actgcttgaa gccgacgttc
      661 cgcagcaaaa tcttgaaagc gagagtcgtc acgcaggctg tcaaagatcg gattgtctgt
      721 gaggtaaaac caggaccagg tctttacgag gtgttgagtg cggggcgaaa atacgttttg
      781 taattcgttc aattcagcgt caacaaccag atgtccgcct cggtggtcct aagagcgaaa
      841 tggatcagcc gatcatctcg aggcagcgta accatatcga aagattcatg aaggccgaac
      901 gttactatcg tcaaccatag ggcttgtgac ttgggaacga ccttgaagca accgagacag
      961 acagttcaga tgagtttcgg cggcgcataa tgtcattgct gggcggtcac caaagattta
     1021 aagctggcgc tgactgggca ccctttatct cattggaaac tggaaattag acgtcaccgg
     1081 tgtaagcaaa gcctccgacg tctatttcct cctctttcct cttggacact cacctgcacc
     1141 atacaacggg atcgcttgtc accaagtgct ttgtcaccgt attctccagc aaggccggac
     1201 gaaaataagc tttgagcaat cggggtaggg ctaagctact actttttgga tttgagtcgg
     1261 tcagactcag cgcgaactat ttattcggct gagatttcac aacttttaga gttgggcaag
     1321 gcaacgacgc gctccaagcg tagcatcaca gccgcgttga gggcactgta acctctttcc
     1381 gcaaccccac gcgggcatca tgagcgggga cagtgcgcta gcttgaaact gcggacgcgt
     1441 gatatgagtg ctgaacaagc tgtagatctt gtgaggtttc ttccagcttg cccgagcaag
     1501 ccaatccacg tgacggcagc cgaaaccgag acaccgcaat cgacagacta tgagttggcg
     1561 cagaaggcag cccacggaga catgggggcc ttcgaagatc tctaccagcg ccacaatcgt
     1621 cgcgtctact ccttgtgctt gaggatgacc gggagtgtgt cggaagctga agacctggct
     1681 caagaggttt tcatccagct ctttagaaaa atcggtagtt ttagaggtga gtcggccttt
     1741 acgacttggc ttcaccggct cacggtcaat caagtcctga tgcacttccg gaagcgggga
     1801 gtgcgaatgg aatcaacgac cgaagacggt gagactccaa tccagatagt caaaggcacc
     1861 gaaaacccca atgcgatgcc tgtagtagat cgcatcgccc tggataaagc tatagcgcaa
     1921 ttgccgcccg gatatcgaac ggtatttacg cttcacgata tcgaggggca tgaacacgaa
     1981 gaaatagcga ggatgctagg ttgttcggtc ggaacgtcga agtcgcaatt acataaggca
     2041 aggatgaaat tacgaggatt attgaggcaa cagaacaagc ctgaatagcc tcgaatacta
     2101 aagagccggt caattattca ccattggcgc tctcttgtgc agtcttccca aggatcgata
     2161 aaaacggagt atgttctgtc ttcccgcgat ttagtaatat tcgcccgcgt tgtgcggcag
     2221 aacaaaggtg gttgtaatga actgcgagac atgtcaggaa ctcatccacg atttgataga
     2281 cggcacaatt agccgtactg atgagctcac tctaaatacg caccttcaag agtgcctgga
     2341 ttgcgagaac gttcgacagg agttgtcgtc gatcgtcggg ttttgccgct cgcaccgggg
     2401 agaatatgaa gcaccgccta atccccaggc gctttggtta cgcattcaga acgttgtaga
     2461 tgctgaacct tctcgatcag gagttagtgg cgtagccacg cacaaatcat ttctaggcgg
     2521 cttactgaat cggagttggg aattgtcgtt cccgcagttg gccagtttga ctgccgcaat
     2581 agtgttgtgt gtatcgttga taacggttgt tggtgttcga cgttggggca acggcggtcc
     2641 agtggaactt caaacgttag cccgcggcga tagcattact gagcgtgtgt ggcaacgtca
     2701 gcaggtgatt aactactgga accagcgagt cgaattgaac aagacgcgtt ggagtcct
//
LOCUS       DATCGC010000728         1497 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_209625, whole genome shotgun sequence.
ACCESSION   DATCGC010000728 DATCGC010000000
VERSION     DATCGC010000728.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1497)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1497)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1497
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_209625"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1268)
                     /gene="argH"
                     /locus_tag="VIJ87_07080"
     CDS             complement(<1..1268)
                     /gene="argH"
                     /locus_tag="VIJ87_07080"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004056 - argininosuccinate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HEY5444223.1"
                     /translation="MTEAKNLWGGRFSGKADPGFAAFNNSFRFDQRLFEADVVASMAY
                     CRALVGAGVFTEDESKTTVAALEQMLAAQRQNADYFKDAAAEDVHSFVETKLVELTGD
                     LGRKLHTGRSRNDQVATDFRLWLRQSIDNLATQLRQTQSALVNFADANLEIVIPGYTH
                     LQRAQPVLLAHWCLAYFEMLARDQARLTDVRRRVNVLPLGSAALAGNSFAIDRETLAA
                     DLGFDAISQNSLDAVSDRDFCVDFLSACSLIMVHLSRLAEDIIIYSTTEFGLIELGDA
                     IATGSSLMPQKKNPDSMELVRGKAGRVFGDLMGLLSTLKGLPLAYNKDMQEDKEAVFD
                     ALDTTTTSLQVTQTVLSNIQINKERASSAAVAGYMNATELADYLVRKGMPFRDAHETV
                     GKVVVDAIGKGVELDQLPLEDFRSHSDLIGG"
BASE COUNT          376 a          423 c          354 g          344 t
ORIGIN      
        1 cccccaatca aatctgaatg actgcgaaaa tcttccaaag ggagttgatc aagttcaacg
       61 cctttgccga tagcgtcgac cacaaccttt cccacagtct catgcgcatc cctgaacggc
      121 atgcctttgc ggaccaggta atcagcgagt tccgtagcgt tcatgtatcc ggcgacggcg
      181 gcgctgctgg cgcgctcctt attgatctga atgttgctca aaactgtttg agtgacttga
      241 agcgacgtgg ttgtcgtatc cagggcgtcg aacaccgctt ctttgtcctc ttgcatgtct
      301 ttgttgtaag ccaatggcaa tcccttaagc gtagacaaca ggcccatcaa atcaccaaat
      361 actcgcccgg cttttccgcg aactaactcc atcgagtcgg gattcttttt ctgcggcatc
      421 aaactcgatc ccgtagcaat tgcgtcaccg agttcaatta gaccaaattc tgtggtggag
      481 taaatgatga tgtcctcggc cagccgcgag agatgcacca tgatgaggga acatgcgctg
      541 aggaaatcca cacagaagtc gcgatcacta acggcgtcaa ggctgttctg cgaaatcgca
      601 tcaaagccaa gatcggcagc taatgtctcg cgatcgattg caaatgagtt cccagctaac
      661 gccgcagacc cgagcggcag cacattcacc cgacgtcgaa catcagtaag ccgggcttga
      721 tcccgagcaa gcatttcaaa gtaggcaaga caccaatgag cgagtaatac aggttgagca
      781 cgctgaaggt gggtgtagcc tggaataacg atctcgagat tagcgtcagc gaagttaaca
      841 agagcagact gggtttgccg taattgagta gcgagattat cgatcgattg tcgcagccac
      901 aaacggaagt cggtggcgac ctgatcgttg cgactgcgac ctgtgtgcag ctttcggccg
      961 aggtcacccg ttagctcaac gagttttgtt tcaacgaatg aatgaacatc ttcggccgct
     1021 gcatctttga agtaatccgc attctgtctt tgagcagcca gcatctgctc aagggcggca
     1081 actgtggtct tcgactcatc ttcggtgaag acgccggcac caaccagtgc gcgacagtaa
     1141 gccatgcttg ccacaacatc agcttcaaac aaacgctgat caaagcggaa cgaattgttg
     1201 aaagcggcaa atccaggatc ggctttgccg ctgaatctcc cgccccaaag attttttgcc
     1261 tcagtcattc acgtcactcc tcgacaagtc tgccctctac acctaaccca acttctaaat
     1321 cccaccaacg gcagttggtg gatcgtttca agtcctgcct acgaacccct tgatcaatcc
     1381 tctcctaatc ccaccaaccg cagttggtgg attgttcaag tccagctacc aaaccaatcc
     1441 ccgaaacctt gtgcacttcg cgccgagcta aaccaagact tcgaatcgtt ctccgcg
//
LOCUS       DATCGC010000729         1034 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_14876, whole genome shotgun sequence.
ACCESSION   DATCGC010000729 DATCGC010000000
VERSION     DATCGC010000729.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1034)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1034)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1034
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14876"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..227
                     /locus_tag="VIJ87_07085"
     CDS             <1..227
                     /locus_tag="VIJ87_07085"
                     /inference="COORDINATES: protein motif:HMM:NF013234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphomannose isomerase type II C-terminal
                     cupin domain"
                     /protein_id="HEY5444224.1"
                     /translation="RAEHWFVVAGEAKVTLDDRDIKVPAGEAIDIPIGSAHRVENEGS
                     ETLVFIEVQRGSYLGEDDIVRLQDDFGRVG"
     gene            356..>1034
                     /locus_tag="VIJ87_07090"
     CDS             356..>1034
                     /locus_tag="VIJ87_07090"
                     /inference="COORDINATES: protein motif:HMM:NF013703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEY5444225.1"
                     /translation="MADSAEEEYSNAQSAGLSSSLETQARNTSAEQGIWSAIWEALRG
                     GSHRNYTEGPIGRSIVLLAIPMVLEMMMESVFAVVDIFWVAHLGTDAAATVGLTESLL
                     TLIYALAMGLSIGATATIARRIGEKNPEGAARAAVQAIAIALFVSLAIAAIGAPLAPR
                     LLAVMGGSPWVVQHGSGFTRVMLAGNITVVMLFMVNAIFRGAGDAAIAMRTLWLANWI
                     NILLGPCL"
BASE COUNT          224 a          240 c          301 g          269 t
ORIGIN      
        1 aacgggctga acactggttt gttgtagctg gcgaagcaaa agttacatta gacgatcgcg
       61 atatcaaagt tcctgccggt gaggccatcg acattccaat cgggtccgct catcgggttg
      121 aaaacgaagg atccgagaca cttgttttca tcgaagtcca acgtggtagt tacctcggtg
      181 aagatgatat tgtcaggctc caggatgatt ttggtcgagt cggctaaagt ttccgcgtta
      241 ctaggtcgtg cggtcgaagt aagcttccga gaaggccttt ccttcccgaa cttttgacta
      301 ctgcggactt aaaggtccgc ttcttattcc cacacagaca gtcaggaaaa acgccatggc
      361 agattctgct gaggaagaat attcgaatgc gcagagtgct gggctctcat cgagccttga
      421 aactcaagcg cgaaatactt cggctgaaca gggaatttgg tcagcgatct gggaggcact
      481 acgtggtgga tcacatcgca actacaccga gggaccaatt ggtcggtcaa tagtgttgct
      541 ggcgatacca atggttctcg aaatgatgat ggaaagtgtc ttcgccgttg tagacatttt
      601 ttgggtggcc catttgggga ctgacgcggc agccacggtc ggactcactg aatcgctttt
      661 gactttgatc tatgcgttgg cgatgggtct gagtattggt gcgactgcga cgatcgccag
      721 gcgtatcggt gagaagaatc cggaaggtgc agcgcgggca gcagtgcagg caattgccat
      781 tgcactcttt gtgtcgctgg cgattgcagc tattggtgct cctcttgctc ccaggttgct
      841 tgctgtgatg ggtggatctc cttgggtggt ccagcacggc tccgggttta cccgcgtcat
      901 gcttgccgga aacataaccg tggtcatgct ctttatggtg aatgccattt tccgcggagc
      961 aggtgacgcg gcgatagcga tgcgtactct ttggctcgcg aactggatca atattctact
     1021 cggaccatgt ttga
//
LOCUS       DATCGC010000730         1013 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_143503, whole genome shotgun sequence.
ACCESSION   DATCGC010000730 DATCGC010000000
VERSION     DATCGC010000730.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1013)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1013)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1013
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_143503"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..282
                     /locus_tag="VIJ87_07095"
     CDS             <1..282
                     /locus_tag="VIJ87_07095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444226.1"
                     /translation="NVTQLPAPSFTPFTVPTSTAAPQTNTVTMVPITTMSGPAIKVDP
                     NANTNQPAQSAVSVSGSNSLTNQQTGNLQNTIQSQINGPTQTGAPVPTL"
     gene            complement(804..>1013)
                     /locus_tag="VIJ87_07100"
     CDS             complement(804..>1013)
                     /locus_tag="VIJ87_07100"
                     /inference="COORDINATES: protein motif:HMM:NF013085.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444227.1"
                     /translation="DGKLDKFFSTVCLLEQGFIKNPDQTINDLVKSKIAELGENIVIR
                     RFTRYLVGEPLPGEESASASSSPNE"
BASE COUNT          255 a          295 c          234 g          229 t
ORIGIN      
        1 aatgtgacac aactccccgc tccctcattc acgccattca cagtccccac ttcgacggcg
       61 gcgccacaaa ctaacacggt taccatggtc cccattacga caatgtcggg gccagcaatt
      121 aaggtcgacc ccaacgcgaa cacgaaccag ccggcgcaat ccgccgtctc agtcagtggt
      181 tccaactcgc ttacgaacca gcaaaccggc aaccttcaga acacgatcca gagccagatc
      241 aacggaccga cccagacagg ggctcccgtt cctacgctat gacccaattc caagcgttaa
      301 tccatcgtcg cccttcaagt cggtctcggt aactaacccc aatgagccgt ggaataataa
      361 tggttggaat ggaccatctg ttcagaatcc cttggacagt cagtacaacc aaaataacca
      421 ggtcatgcat atcgagccca gcgctctagt acgtcaaact caagggttag atcaaaatgc
      481 ggataatgac ccaaccggta cggagagcct tcacattaaa gactggaatg tgccgttttt
      541 tgagatgtca gagtccccta accagataac accagggaag ttgatctggg agcagtgaga
      601 tattcatcgc tccacttctt gttgccgata ctcttttgac gaaagaagag ttcttgttgc
      661 tagtcgagca catgggcaac gagaacccgc tcgactccga atgatgactt ttatccgcgg
      721 ttgcggttct ggctgttctg tcgccgcttt ttgtccgctt ccgcgtacgc caaatccaca
      781 atcggtaatt gtcgatctca cgcctattcg ttaggcgaac tcgacgcgct cgcggattcc
      841 tcgccaggca gcggttcacc caccagataa cgggtgaagc ggcggataac gatgttctcg
      901 ccgagctcgg cgattttcga tttcaccaaa tcattgatcg tttgatcggg atttttgatg
      961 aacccctgct cgagcagaca cacggtcgag aaaaatttgt cgagtttgcc gtc
//
LOCUS       DATCGC010000731         2752 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_444193, whole genome shotgun sequence.
ACCESSION   DATCGC010000731 DATCGC010000000
VERSION     DATCGC010000731.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2752)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2752)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2752
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_444193"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(323..1270)
                     /locus_tag="VIJ87_07105"
     CDS             complement(323..1270)
                     /locus_tag="VIJ87_07105"
                     /inference="COORDINATES: protein motif:HMM:NF020905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urea carboxylase-associated family protein"
                     /protein_id="HEY5444228.1"
                     /translation="MISYGKERFDLVLQPISGKAVPVYAGEVLRIIQVEGEQCVDFNA
                     FNLHDYKERMDVGSSRSSTGFRPKKGDILSSNPPRYRPMIGILEMSPTCQTDVLGRTC
                     HATVFEMYFGLERHTNCQDTIAEAISEYGLTPDDVHDSFNMWMNSEWDSTGKTFTMAN
                     TGRKGDFVDLVAFFDILAVPLMCGSGDIRWTSNFSLKPIQIKVFEASSDTKAIVDQVR
                     TRHGRFKNQRTVDQFRVKDIKADRELRPVPGWKPQFVNFPLEVEDMAVKLNEPEYRKA
                     VSLQEQGFGKDVGDVVRRAVMIWANKHLAAPRRLKITFP"
     gene            complement(1267..1434)
                     /locus_tag="VIJ87_07110"
     CDS             complement(1267..1434)
                     /locus_tag="VIJ87_07110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444229.1"
                     /translation="MLEPKKDEFVEIKVGFNQQQRQLIEKIKKETDMGKTDAEVIRAV
                     FVQWLKEEGLL"
     gene            1731..1895
                     /locus_tag="VIJ87_07115"
     CDS             1731..1895
                     /locus_tag="VIJ87_07115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444230.1"
                     /translation="MADSPSDGAQIIEVTFNQQQYVIIEKLKAEGQFGRTDEEIVRNI
                     FLEFLRQEGV"
     gene            1898..>2752
                     /locus_tag="VIJ87_07120"
     CDS             1898..>2752
                     /locus_tag="VIJ87_07120"
                     /inference="COORDINATES: protein motif:HMM:NF020905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urea carboxylase-associated family protein"
                     /protein_id="HEY5444231.1"
                     /translation="MLQYGPLKTEVLLQPVSGKALPVLRGEVIRIIQEEGEQCVDFNA
                     FNLHDYKEYLGVSNTRSRNAFRVKKGDIIWSVSSRDRPMFVILEIAETCRTDLLGGRC
                     RASLFDRRGYGLHTNCQDTLSAAIGEYDLTPDDVHDSLNLWMNTEWDSVGRYFTLQNT
                     GRKGDYVDLLATIDTLSVAAPCGSGDLGWTSNFALRPIRVQVFEAADETLARVKEIER
                     QNTGFKGQRTPDEFKVNKIKADRELRRNTSYVPEFVNYPIINKSIRVPLSTDELAKTN
                     QLVSAGLGR"
BASE COUNT          693 a          669 c          673 g          717 t
ORIGIN      
        1 aactaagcga gccgcgacat ggttgggttt tcttgtcaat atttggttct agtccgcgct
       61 gaccttgccc ttaatcagcg ggtccggttc attccactga gcagaggatt gggaatcctc
      121 gtgccgggtt gattccattc caaatatcat acattcatcc gttgcgtatc agatgcaatt
      181 ttcgagattg ctgacaccct gcaggcgtgt ccggagtttg gtgcttgtgg gaggagcaca
      241 gggttcgtcg agcgaacgtg acctgattgg ctgtataacc agccgctaag cttcgagact
      301 tggcaaatcg ctcgtatttt ctttacggga atgtaatttt taatcgccgg ggcgccgcca
      361 gatgcttgtt ggcccagatc atgacagccc ggcggacgac gtcacccacg tcttttccaa
      421 atccttgctc ctgaagactt acagccttcc ggtactcggg ctcatttagc ttaactgcca
      481 tgtcttctac ttcaagggga aaatttacga actgaggttt ccaacctgga accggtcgta
      541 gctcccgatc ggctttaatg tctttgacac ggaactgatc gaccgttctc tgatttttga
      601 accgtccgtg gcgcgtccta acctgatcca ctattgcctt cgtatccgag gatgcttcaa
      661 acacttttat ctgaataggc ttgagagaaa agttgctcgt ccatctaata tcccccgaac
      721 cacacattaa aggaacggcg agaatatcaa agaacgcgac cagatccacg aaatcacctt
      781 tgcgaccggt gttagccatc gtaaaggtct tgccagttga gtcccactct gaattcatcc
      841 acatgttgaa ggagtcgtgc acatcatccg gcgtcagacc gtattcgcta atggcttcag
      901 caatcgtatc ctggcagttt gtatgtcgct cgagcccgaa atacatctca aacacggtgg
      961 cgtgacacgt tctgcctaaa acgtccgttt ggcaggtagg ggacatctct aaaataccta
     1021 tcatgggacg gtatcggggt ggattggaag atagaatatc tcctttcttt ggtcgaaaac
     1081 cagttgagct acggctagaa ccgacgtcca tcctttcttt gtaatcgtgc aagttaaatg
     1141 cattgaagtc gacacactgc tcaccctcaa cttgaataat ccgcagtact tctccggcgt
     1201 ataccgggac tgcctttccc gatatcggtt gtaaaacgag atcaaatcgc tccttaccgt
     1261 aggaaatcat aataacccct cctccttcag ccactgaacg aatacggctc ggattacctc
     1321 ggcatccgtt ttacccatgt ctgtttcctt tttaattttt tcaatcagtt gacgctgttg
     1381 ctgattgaag ccaactttta tctcaacgaa ttcatctttt ttaggttcga gcatgctttc
     1441 acctcccatt gtcatggtaa aattatcctt tcacgacaca aacattcctg tcaaacaatt
     1501 gtagtgcagc caagtttact tgacacggtt tggggatggt gcaataggat tgctccgtta
     1561 ggataactca ataacagatc ctcgctgggc gatgactgtg taacgagctg tggcacagaa
     1621 ttactcatgc gcaaggcgga aatatcgcga atcatcacgg ataccagaac ggctaatcgg
     1681 tagaggcgag gtttacgtga cccggaggga aaaaaattag gaggtcaaag atggcagatt
     1741 caccatcgga cggcgcgcaa attatcgagg tgacattcaa tcaacagcag tacgtgatta
     1801 tcgagaagct taaagccgag ggacaatttg ggcggaccga cgaagagatt gtacgaaaca
     1861 tcttccttga atttctgaga caggagggag tctagacatg ttgcaatacg gaccattgaa
     1921 gacagaagtt ttgttgcaac ctgtctctgg aaaggctttg cccgttttgc gcggtgaagt
     1981 aattcgtatc atccaggaag aaggcgagca atgcgtggat ttcaacgcct ttaatttgca
     2041 cgattacaaa gagtatctcg gcgttagtaa tacgcgctcg cggaacgcct ttcgagtcaa
     2101 gaaaggcgac atcatctgga gcgtttcttc acgggaccgt ccgatgtttg tcatcctgga
     2161 aatcgcggaa acttgcagga ccgacctgct cgggggtcgc tgtcgagcca gtctttttga
     2221 tcgcaggggc tatggcttgc ataccaattg tcaggacacc ctgtcggctg caatcggcga
     2281 gtatgacctt acgcctgacg atgtccatga ttcgctaaat ttgtggatga acacagaatg
     2341 ggattcggtt ggtcgttact ttaccctgca aaatactggg cgaaaaggcg attacgtgga
     2401 tctgttagca accattgaca cgttgtccgt ggcggcgccc tgtgggtccg gcgatcttgg
     2461 ctggaccagt aacttcgcat tgagaccgat tcgcgtccaa gtctttgagg ctgctgacga
     2521 aacccttgcg cgggtaaaag agattgagcg ccagaatacc ggattcaagg gacaaagaac
     2581 gcccgatgaa ttcaaagtca ataagatcaa agctgatcga gaactgcgcc gcaatacaag
     2641 ctacgttcca gaatttgtta actatccaat aatcaataaa tctattcggg ttcctctcag
     2701 cacagatgag ttggcgaaga cgaaccaact cgtgtcagcg ggactcggca gg
//
LOCUS       DATCGC010000732         1459 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_376009, whole genome shotgun sequence.
ACCESSION   DATCGC010000732 DATCGC010000000
VERSION     DATCGC010000732.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1459)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1459)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1459
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_376009"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(154..1071)
                     /locus_tag="VIJ87_07125"
     CDS             complement(154..1071)
                     /locus_tag="VIJ87_07125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444232.1"
                     /translation="MTICPCCGFKFTGSLTDGCQQCGARSVGEALPQPAHLLPSYGRA
                     LVLVVSGSLFVLVFATQTIMAMAQRASGSLGRLIQFWSWVAAGETAAWRLKWISMPVM
                     FVTLWCGLKLYRSIRLQPKRFCGVTYARRGLLASAMVGFLIALLIGITVPARLRQRDM
                     AAEAAFRADYYTFEAAVYQYKMKYKKLPADFNELQRLPDPNGTLARALANMDPAGYHP
                     SVDVAAVATERSRKPRVQVIRASFGPSTDDTTPAGLAFTNYEMRMPGADKILLTDDDW
                     IARDGVIMKLADVAKGGVGRSVSAGVLNP"
     gene            complement(1112..>1459)
                     /locus_tag="VIJ87_07130"
     CDS             complement(1112..>1459)
                     /locus_tag="VIJ87_07130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444233.1"
                     /translation="SVMVSYASARAESLIPKCDVGFLRRPERVVLFIIGALSTHPSST
                     NFFANRMPAVLWVLAVGSYWTFAHRMYHTWRELTKLETIKPNVETQTSYSQAGASSGG
                     ERRAEQRLVHKPS"
BASE COUNT          363 a          396 c          372 g          328 t
ORIGIN      
        1 gtatacgtaa cctgcgtaat cgtgccgtca tcaattgtga cagcatcgat gatccggcca
       61 tccgtcattc gcccggtctt agacagacgg gcaatgcgtg agggctcgtc ttcttttttc
      121 tttcggaagc ggttgagaaa cgacattacg tcgctaaggg ttgaggactc ctgctgacac
      181 gctgcggccc acaccaccct tagcaacgtc agcaagtttc atgatcacgc catcgcgggc
      241 gatccaatcg tcatcagtta gaagaatctt gtcagcgcca ggcattcgca tttcgtagtt
      301 cgtgaacgcc aggcctgcgg gagttgtgtc gtcagttgaa ggaccaaaag aagcgcgaat
      361 cacctgaaca cgcggcttcc gtgacctctc agtcgcgact gccgcaacat caacgctggg
      421 atgatagcca gcgggatcca tgtttgcgag tgcgcgtgcg agtgttccgt ttggatcagg
      481 aagacgttgc aactcgttga aatcggccgg cagcttcttg tatttcattt tgtactgata
      541 caccgcggct tcaaatgtgt agtagtccgc tcgaaaagct gcttccgcgg ccatatcgcg
      601 ctggcgaagt ctcgcgggta cggtaatgcc aatcaacaat gcgataagaa acccaaccat
      661 tgcggatgca aggagacctc tgcgagcgta cgtcactcca cagaagcgtt tgggttgaag
      721 acgaattgat ctgtaaagct tgaggccaca ccaaagagtt acgaacatga cgggcatcga
      781 aatccatttc aatcgccagg cagcagtctc accagccgcc acccacgacc agaactggat
      841 tagtcgacct agtgaacccg aggctctctg ggccatcgcc attattgttt gagtcgcaaa
      901 tacgaggacg aacagagaac cgctgaccac aagaaccaac gcacgtccgt acgatggcaa
      961 cagatgagcg ggctgaggca atgcttcacc gacagaacga gcgccacatt gctgacagcc
     1021 atcggtcaga ctcccggtaa acttaaatcc acagcaggga caaatcgtca cttgtatttt
     1081 cacctctaac aaaaaccttt tttagcaaag tctagcttgg cttgtgtacc aagcgttgtt
     1141 cagcccgtcg ttcaccaccc gaacttgcgc cagcttgtga atacgaagtt tgcgtttcta
     1201 cgttcggttt tattgtttcc agcttagtta gttcgcgcca cgtgtgatac atccgatgcg
     1261 cgaaggtcca gtaggaaccg acggcgagca cccaaagaac cgcaggcatc cggttcgcga
     1321 agaaattggt tgaactcgga tgagtgctaa gtgctccgat tataaagaga acaacgcgct
     1381 ctggcctccg cagaaagcct acatcgcatt taggaatcaa gctttccgct cgggcgcttg
     1441 cgtagcttac cataaccga
//
LOCUS       DATCGC010000733         1116 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_178116, whole genome shotgun sequence.
ACCESSION   DATCGC010000733 DATCGC010000000
VERSION     DATCGC010000733.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1116
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_178116"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..653
                     /locus_tag="VIJ87_07135"
     CDS             <1..653
                     /locus_tag="VIJ87_07135"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HEY5444234.1"
                     /translation="IKDKYTQGHSERVGRYSEIIARELGWSEDEVEGIQIAGYLHDVG
                     KLVVDRNIINAPYHIDAKQSSELNRHPAAGYEILLPINHPYADIPLMAKYHHERLDGR
                     GYPDGLVDEQIPLGAKIVALADSFDAMTTDRPYRRRRTFADVVRDLRESSGTQFDGKV
                     VIAFARAILKEVTGETKERRVIKMLGKGYLEGEEVPTLLADLIAELSGKQTSAVSG"
     gene            complement(838..>1116)
                     /locus_tag="VIJ87_07140"
     CDS             complement(838..>1116)
                     /locus_tag="VIJ87_07140"
                     /inference="COORDINATES: protein motif:HMM:NF012708.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HEY5444235.1"
                     /translation="VREAVVPILKNEITIGRGSRSVSVDLPIKGDPEVSRVHATLSRD
                     NEGRFWVVAKGRNPTLVNGRELSRDQASEVFADQKISICNFIIRIQPR"
BASE COUNT          296 a          278 c          279 g          263 t
ORIGIN      
        1 atatcaaaga caagtacacg caaggtcact cggagagggt cggacgatac agcgaaatca
       61 tcgcgcgtga gctgggatgg agcgaagatg aagttgaggg aattcagatc gccggatatc
      121 ttcacgacgt cggtaaactc gtcgtcgatc gaaacatcat caacgcgcct taccatatcg
      181 acgccaagca atcgagtgaa ctgaatagac acccggcagc tggttacgag atcttattgc
      241 ctatcaatca cccatacgca gacattcctt tgatggcgaa atatcatcat gaacgactcg
      301 atggacgtgg ttatccggac ggacttgtcg acgaacaaat ccctttaggc gccaagatcg
      361 ttgcgctcgc tgactcgttc gacgcgatga ctacagatcg accatatcgt cgacgacgaa
      421 cattcgcaga tgtagttcgc gatctacgag agagcagtgg gacgcagttt gacggtaagg
      481 tagtcatcgc attcgcccga gcgatcttga aagaagtcac aggtgagacg aaggaacgtc
      541 gtgtgatcaa gatgcttggg aaaggttatt tggaaggcga agaagtacca acgctgcttg
      601 ctgatctgat tgctgagttg agtgggaagc agacgagcgc tgttagcggg taggttgttt
      661 ttagttcact ccgtcaacca agaagtccat ttcaaatcga caaactacgc tttacgtaaa
      721 tagaaacagg cctggtcgcc ctggccggtc ttattaagtg ttgccgcctg ctgttcaaaa
      781 gcaatcaatt cctctttagt taacacatcc gcgcgtggtt ctatggcgcc ggtggcttta
      841 acgcggctga attctaataa tgaaattaca aatcgaaatc ttctgatcgg caaacacctc
      901 agatgcctgg tcccgcgata actctcgacc attcacgagc gttggatttc ttcctttggc
      961 taccacccag aagcgacctt cattgtcgcg tgagagcgtg gcatgaacgc gactcacctc
     1021 cggatcaccc ttaatcggta aatcaaccga aacacttcgt gaacctctgc caatcgtaat
     1081 ctcgtttttc aggatcggaa ctaccgcttc gcgcac
//
LOCUS       DATCGC010000734         2225 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_409295, whole genome shotgun sequence.
ACCESSION   DATCGC010000734 DATCGC010000000
VERSION     DATCGC010000734.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2225
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_409295"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..804)
                     /gene="clpX"
                     /locus_tag="VIJ87_07145"
     CDS             complement(<1..804)
                     /gene="clpX"
                     /locus_tag="VIJ87_07145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HEY5444236.1"
                     /translation="MVRRTDDTLRCSFCGKSQNEVKKLIAGPTVYICNECIDICNEII
                     TDDQQAESVATRPPLPKPGEIKSFLDEYVIGQDETKKRLAVAVYQHYKRIELGRRRSD
                     VEIQKANILLIGPTGTGKTLLAQTLARMLSVPFTIVDATTLTEAGYVGEDVENIILKL
                     LQAANGDVERAQQGIIYIDEVDKICRKDENPSITRDVSGEGVQQALLKILEGTVANVP
                     PQGGRKHPHQEFFPVDTQNILFICGGAFVGLEKVIERRLRNKSLGFHAEV"
     gene            complement(843..1427)
                     /gene="clpP"
                     /locus_tag="VIJ87_07150"
     CDS             complement(843..1427)
                     /gene="clpP"
                     /locus_tag="VIJ87_07150"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009368 - endopeptidase Clp complex
                     [Evidence IEA];
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HEY5444237.1"
                     /translation="MALVPMVVEQTSRGERAFDIYSRLLKDNIIFLGTPIDDQIANLI
                     VAQLLFLEAEDPEKDINLYINSPGGSITAGMAIYDTMQFIRPDVTTICVGQCASMGAL
                     LLGAGAKGKRFALPNSRILIHQPSGGSQGQATDIRIQAEEILRMRELTSQIIAKHSGQ
                     SYETVERDVERDKIMSAKQAKEYGLIDEVIAHRE"
     gene            complement(1584..>2225)
                     /locus_tag="VIJ87_07155"
     CDS             complement(1584..>2225)
                     /locus_tag="VIJ87_07155"
                     /inference="COORDINATES: protein motif:HMM:NF017509.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444238.1"
                     /translation="VDFTSQGLAGKKVQYEAQVTAVRRRELPEVDDEWAKSLGDDFDS
                     VETLRKKIHEDLEKRSASESDHRLRAEVMKKLLEAHQFEVPQSLVEQQTSHRLESVVR
                     DMIGRGIDPRNRDVNWEGAREELKVQAEEDVRASMLLEQIAEDEKITVSDEEVEAEIE
                     AITTASRQPKEQVRAALTKDGGERSIAHRLRNRKALDLLIENASVTEEEWSEE"
BASE COUNT          491 a          581 c          528 g          625 t
ORIGIN      
        1 tacttcagca tggaaaccca gcgatttgtt gcggagtctt ctttcgatca ctttttcgag
       61 accaacgaaa gcgcccccac aaataaaaag aatattctgg gtatcgactg ggaagaattc
      121 ctggtgcgga tgtttgcggc caccctgggg aggaacgttg gccacagttc cttcgagtat
      181 cttcaagaga gcctgctgca caccttcgcc cgaaacatcg cgcgtaatcg acggattttc
      241 gtctttgcga caaatcttgt cgacttcgtc tatgtagata attccttgtt gcgctcgctc
      301 gacgtctcca ttcgctgcct gaagcagctt aagaatgatg ttctcaacgt cttcaccaac
      361 gtaacctgct tcggtcaagg ttgtggcgtc gacaattgtg aaaggaacgc tcagcattcg
      421 agcgagcgtt tgcgcgagca gcgtcttgcc tgttccggtc ggtccgatga gaaggatgtt
      481 tgctttctgt atctcgacat ccgaacgacg acgacccagt tcgatccgtt tgtagtgttg
      541 atacacagcg acggcgaggc gcttctttgt ttcgtcctga ccgatcacgt actcatctaa
      601 aaagcttttg atttctccgg gctttggtaa gggagggcga gtagctactg actcggcttg
      661 ctgatcgtca gtgatgatct cattgcagat gtcgatgcac tcattgcaaa tatagactgt
      721 cggccctgca ataagcttct tgacctcatt ctgtgatttg ccacagaacg agcagcgcag
      781 cgtgtcatcg gttcgtctca ccatagttct aactgaagaa agctccttaa gaattcgaag
      841 gcctactcgc ggtgggcaat gacctcgtct attaaaccat attctttagc ctgcttggca
      901 gacattattt tatcgcgttc aacatcgcgc tcgaccgttt cgtacgactg tccgctgtgt
      961 ttggcgataa tctgcgacgt aagctcgcgc atgcgcagga tctcttcagc ttgaatacgg
     1021 atgtctgttg cctgaccctg ggaaccgcct gatggctgat gaatcaagat tcgtgagttc
     1081 ggaagcgcaa agcgtttacc ttttgctccg gcacccagca gaagcgcgcc catcgaagcg
     1141 cactgtccga cacaaattgt cgtgacgtct ggccggatga attgcatcgt gtcgtagatt
     1201 gccatgccgg ccgtgatcga accaccggga gaattgatgt aaaggtttat gtctttttcg
     1261 gggtcttcag cttccaggaa taagagctga gcaacgatca gatttgcgat ctgatcatcg
     1321 atcggggtgc cgagaaaaat aatattgtct ttgagtagcc gtgagtagat atcgaaggcg
     1381 cgctcgcctc gcgaagtttg ctcgactacc atcgggacta aagccatgtc gtcttaacct
     1441 cgttcaataa ctaatgataa ggttgatgag tgaaactcac ttcgcattga agaatagttt
     1501 tgcgattctt cgatacgatt tagcttgtcg atgtctcacc aaaagtttga tgtcaagggc
     1561 gacaagctga agcatatccg acgttattct tcgctccact cttcttcagt cacgcttgca
     1621 ttttcaatca aaagatcaag cgctttacga ttgcgcaatc tgtgcgcgat gctacgttcg
     1681 cccccatcct ttgtcaaggc agcccgcact tgctcttttg gttgtcgtga tgcagttgtg
     1741 atcgcctcga tctcagcttc aacttcttca tctgagacag tgattttctc atcttcagcg
     1801 atctgttcaa gcagcatact ggcgcgcaca tcttcctcag cttgcacctt caactcttcg
     1861 cgcgcgcctt cccaattgac gtcgcgattc cgaggatcaa tgccacggcc aatcatgtcg
     1921 cgcactacac tttcgagtcg gtgactcgtt tgttgctcga ccaaactttg tggaacttcg
     1981 aactggtgtg cttccagaag cttcttcatt acttctgccc ggagtcgatg atccgactca
     2041 ctggcggatc tcttttccag gtcttcgtga atcttcttgc gcaacgtttc aaccgagtcg
     2101 aaatcatcac ctaaactctt cgcccattcg tcatcaactt ctggaagttc tcgacgacga
     2161 accgctgtca cctgggcttc gtattgaacc tttttgccag cgagaccttg cgaagtgaaa
     2221 tctac
//
LOCUS       DATCGC010000735         1181 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_477921, whole genome shotgun sequence.
ACCESSION   DATCGC010000735 DATCGC010000000
VERSION     DATCGC010000735.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1181)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1181)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1181
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_477921"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            37..>1181
                     /locus_tag="VIJ87_07160"
     CDS             37..>1181
                     /locus_tag="VIJ87_07160"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY5444239.1"
                     /translation="MERDLQGNATTHSLLNLAASLRSLPGRKAVIFFSEGLVLPPNIY
                     GAFRSVINTANRGNVSFYSIDVAGLRTESKTAETGREINSRSELRIAQLGSAEQNGPM
                     TKGLERNEDLLRLNPDSGLGQLANETGGFLITDSNDLKNRIQQVDEDLHSYYLLSYSS
                     NNQKYDGHFRKIEVKLKRTGLSVQSRKGYYAIKDTFTSPVLSYEAAPIAALESTPKAD
                     SFPFYVGGFSFPDRQRVGLVPVMADVPLSAFTIHLDQVKKSYDTDFSIVTLIKNQTGE
                     VVAKLSNQYLLNGPLDKAEDAKKERVLFYREANLPPDRYTLDTIAYDAPSGRASVRST
                     TLEVTDSDEARLRLSDVVVLKRAEPANGADDTRANPFRVGNMIAYPYL"
BASE COUNT          312 a          290 c          303 g          276 t
ORIGIN      
        1 gcaatgcaac tgcgaaacct ggagggaatt gaagagatgg aacgcgatct ccagggcaac
       61 gcgactacac actctctact gaacctcgcg gcctcactgc ggtccttacc tggacgtaag
      121 gcagttatat ttttctcaga aggtttggtc cttccaccga acatctatgg agctttcagg
      181 tcggtaatca atacagcgaa tcgcggtaat gtcagtttct actccattga cgttgcgggt
      241 ttaaggacag agagtaaaac agcggagaca ggtcgagaga tcaattcgcg cagtgagctg
      301 cgaattgctc agctcggaag cgcagagcaa aacggtccca tgactaaggg gttggaacgc
      361 aatgaagatt tactgcgcct aaacccggat agtggcctgg gacaactcgc taacgaaact
      421 ggtggatttc taattaccga ctcgaacgac ctgaagaatc gaatccaaca agtcgatgag
      481 gatctgcatt cgtattatct gttgagctat agctccaaca atcaaaagta cgacggtcat
      541 tttcgaaaga ttgaagtcaa actcaaacgc acggggctct ccgtacagag tcgcaaaggt
      601 tactacgcaa tcaaggacac gtttacctca ccagtgcttt cgtacgaagc tgcgccgatc
      661 gcggccttgg agagcacgcc gaaggccgat tcttttccgt tctatgttgg tggttttagt
      721 ttcccggatc gtcaacgagt aggtctcgtg ccggtaatgg ctgacgttcc gctgtcggcc
      781 ttcacgattc atttagacca ggtcaagaag tcgtacgaca ctgacttctc aattgtcaca
      841 ctgatcaaaa accagactgg tgaagtagtc gcgaagttga gtaatcagta tctactgaac
      901 ggtccactcg ataaagctga agatgcaaag aaagagcgag ttctctttta ccgtgaagcc
      961 aatcttccac ctgaccgcta cactttggat acgatcgcgt atgacgcgcc cagcggtcgt
     1021 gccagtgtgc gcagtacaac cctcgaagtt acagattctg atgaagccag gttgcggctt
     1081 agtgacgttg ttgttctgaa gcgagcagaa ccggcgaatg gtgcagatga caccagggcc
     1141 aatccatttc gggttggcaa catgatcgcg tacccgtacc t
//
LOCUS       DATCGC010000736         1310 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_110054, whole genome shotgun sequence.
ACCESSION   DATCGC010000736 DATCGC010000000
VERSION     DATCGC010000736.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1310)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1310)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1310
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110054"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..406
                     /locus_tag="VIJ87_07165"
     CDS             <1..406
                     /locus_tag="VIJ87_07165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444240.1"
                     /translation="LLSLLVGAAQRAPLNAANRIIPVPLHSEKEERRGFNQASLIAHG
                     LASSLGVMVDESSLVRVMGTDKYRAGLDAKGRLETVADAFSVRFPRLIEGEEVLLIDD
                     VFTTGATASSCAAALFSAGAKSVFVLTIARPA"
     gene            1078..1269
                     /gene="tatA"
                     /locus_tag="VIJ87_07170"
     CDS             1078..1269
                     /gene="tatA"
                     /locus_tag="VIJ87_07170"
                     /inference="COORDINATES: protein motif:HMM:NF014470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HEY5444241.1"
                     /translation="MSQTMLAIGGLGTPEIVVIAIVIFLLFGATRLPQLAKALGQSKR
                     AFKEGLDDGEREGRKDLEK"
BASE COUNT          316 a          309 c          358 g          327 t
ORIGIN      
        1 cctcctctcg cttctcgttg gagcggccca acgtgctcct ctgaatgcgg ctaatcggat
       61 tatcccagtg cctttacatt ccgagaaaga ggagcgacga gggtttaacc aagcgtcact
      121 aatcgctcat ggactcgcct cttcgcttgg agtaatggtc gacgaatcta gcctcgttcg
      181 agttatggga actgacaaat accgagccgg ccttgatgcc aagggacgac tcgaaaccgt
      241 cgccgatgct tttagtgttc ggtttccgag gctgattgag ggagaggagg tgctgctgat
      301 tgacgatgtc ttcacaactg gagcaaccgc ttcaagttgt gcggctgcac tattttcggc
      361 gggggccaag tcagtctttg tgctcacgat tgcccgacct gcatgagcct gttggcgaaa
      421 aataggcaat gaatcgccgt ggtggcgcat ctcaagttaa gccaaatgca acataatttt
      481 gacactatct ttcagcgtcg cgtaatatca cggtcagtat gaatggcaga gttttagtgc
      541 taaatacttc gttcgagcct atcaacgtgt gcaccgaacg gcgcgcggtg gttatgattt
      601 tcaaaggggt tgcaagggta gaagagcata acggacacat gcttcattct cagaagttgt
      661 cgattcatgc accctcggtg attcgattaa ccgagtacat tcacatcccg ttcgagcgaa
      721 ggtctttgtc acgaaaaaac atcctcctac gcgatcattc cacctgtcag tattgtggca
      781 ggcagtatgc cccttcggaa cttacccttg accatgtgct tcctcgctcg cgcggagggg
      841 agtcggcgtg ggataatcta gtcgcctgtt gtaagcgatg caatcataag aagggtagtc
      901 gcacacccga agagtctggt atgcacctgt cgcggagacc tcgagggttt tcattgcacg
      961 ttaaccgcca gatcatgcgt tacctcggac gtgccgacga gacttggcga aagtatcttt
     1021 tctacgaatc agacaacggc gattagctta agggctgtta accgaaatga ggaaaatatg
     1081 agtcagacaa tgttggccat cggaggttta ggaactccgg agattgtagt tatcgcgatc
     1141 gtgatctttt tgctttttgg cgctacccgc ttgccccagt tagcgaaggc cctcggacaa
     1201 agtaaacgag ctttcaagga aggcttggat gatggcgaaa gagaagggcg aaaagatctc
     1261 gagaagtaag cgagacgaac aaagtttcgg gtcagtgagt gtgagtcttt
//
LOCUS       DATCGC010000737         1366 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_243828, whole genome shotgun sequence.
ACCESSION   DATCGC010000737 DATCGC010000000
VERSION     DATCGC010000737.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1366)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1366)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1366
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_243828"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..929
                     /locus_tag="VIJ87_07175"
     CDS             <1..929
                     /locus_tag="VIJ87_07175"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY5444242.1"
                     /translation="SRGCPHHCTFCYKDGFFKGGRSFYTQVVDDALAEIERLPGRHLY
                     FLDDHLLGNTRFSRDLFHGMRGMGRVFQGAATVDSILRDDLIEDAAAAGLRSLFVGFE
                     TLSNNALQDAGKRQNLGRNYREVVRRLDSLGIMINGSFVFGLDGDDRDVFRRTVDWAV
                     DVGITTATFHILTPYPGTALFDEMESCNRIETRNWDLYDTRHVIYRPSCMSPAELKRG
                     YDWAYEEFYRWTNIFHAASAHSSLKHQAKHFFYSAGWKKFERAWDIAIRIKQLSQIRP
                     LLEAVLSPVTDLDEMYSSARSIRPGTMTTVAE"
     gene            1073..>1366
                     /locus_tag="VIJ87_07180"
     CDS             1073..>1366
                     /locus_tag="VIJ87_07180"
                     /inference="COORDINATES: protein motif:HMM:NF025887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEY5444243.1"
                     /translation="MVTSDDEPPVNSNTHVEQEIREVNAEWATALAQRDGSALDRIMS
                     NDFVLAYPFEGDDKEQFIADVMAGNLKVDSLVDRDATLRVSGGTAIIFGSETAN"
BASE COUNT          336 a          350 c          352 g          328 t
ORIGIN      
        1 tgtcgcgcgg atgtccacat cattgcacct tctgttacaa ggacggcttc ttcaaaggag
       61 gacgttcgtt ctacacgcag gtcgtagacg acgctctcgc cgagattgaa cggcttcccg
      121 gccgccatct ttatttcctc gatgatcatc tcctgggtaa cacgcgcttc tcgagagatc
      181 tctttcatgg catgcgaggg atgggtcgag tatttcaagg cgctgcaaca gtagattcga
      241 ttctgcgcga tgatttgatc gaagacgcag ctgccgccgg tctgcgtagt ttattcgttg
      301 gcttcgaaac tctttccaac aacgcactcc aggacgcggg caagcgacag aaccttggtc
      361 gcaactatcg cgaagtcgtt cgccgactgg atagtctcgg tatcatgatc aatggcagct
      421 ttgtctttgg cctggatgga gacgaccgcg atgtattccg tcgtactgtc gactgggcag
      481 ttgatgtggg aattacgact gccacattcc acatcctgac tccgtatccg gggaccgcgt
      541 tgtttgatga gatggaatca tgtaaccgga tcgaaacgcg caattgggac ttatacgata
      601 cgcgtcacgt tatctatcgc ccttcatgca tgtcgccggc agaactgaag cgtgggtacg
      661 actgggctta tgaggagttt tatcgttgga ccaatatctt tcatgcagca tccgcgcaca
      721 gctcactgaa gcatcaagcg aaacacttct tctacagtgc gggctggaag aaattcgagc
      781 gcgcatggga catcgctata aggattaagc agctctccca aatacgacca cttcttgaag
      841 cggtcctatc acctgttact gatttagacg agatgtacag ctcagctcga agtatcagac
      901 caggcacgat gaccacggtt gcggaatgag gcaacaatct ctaacagaac gctttcctcc
      961 agcgaattac tccatgttct agacacttca tttccaatcg ctcgaaaaac taattgatct
     1021 caacgccaac ttgctataga agctcagcgg aaaactttga aaaggaaaaa gcatggtcac
     1081 atctgatgat gaaccgccgg taaactcgaa cacccacgtt gagcaggaga tcagggaggt
     1141 taatgcagaa tgggcgacgg cactggcaca gcgggatggt tctgcccttg atcgcataat
     1201 gtcgaacgac tttgtcttag cgtatccatt tgagggcgac gacaaggaac aattcatcgc
     1261 cgacgtaatg gcgggtaacc tgaaagtgga ttcccttgtt gaccgcgacg cgacgctccg
     1321 agtctccggc ggcactgcga tcatctttgg aagtgaaacg gccaat
//
LOCUS       DATCGC010000738         1091 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_178219, whole genome shotgun sequence.
ACCESSION   DATCGC010000738 DATCGC010000000
VERSION     DATCGC010000738.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1091)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1091)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1091
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_178219"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..357)
                     /locus_tag="VIJ87_07185"
     CDS             complement(<1..357)
                     /locus_tag="VIJ87_07185"
                     /inference="COORDINATES: protein motif:HMM:NF024793.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY5444244.1"
                     /translation="MYAEFYGLKELPFALTPDPRFIYFTPSHTEVMANLHYGIESGKG
                     LVVVTGEVGTGKTTILRWMMQRLDRTVLVAYVFNPRLSVAEFYQHVATLLDVQKWETK
                     SELLLELGKALESRHSR"
     gene            complement(401..>1091)
                     /locus_tag="VIJ87_07190"
     CDS             complement(401..>1091)
                     /locus_tag="VIJ87_07190"
                     /inference="COORDINATES: protein motif:HMM:NF025179.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GNVR domain-containing protein"
                     /protein_id="HEY5444245.1"
                     /translation="MEEMVSDWKIKIKEKQEKLDKRPDLTANSVEQEIKLAESEIKRQ
                     QSSLSDNEKQISELLSRLNLVPGAEVQLAAIDRDYQTKKAAYDSLLAKQAGISLGANA
                     LNQQQGEGIAVVDAANLPSQPVAPKRLILFGVGFGLGLVVGLILTAALEVPRLLTIQT
                     AEDARHYTNLPVLISVPELLTPQEAKAIPRRRRLLLAAGVAVTVVSIPVLALALKLTH
                     VFEFLSSARTS"
BASE COUNT          262 a          295 c          262 g          272 t
ORIGIN      
        1 tcgagagtga cgcgactcga gcgcttttcc taattcaagc aaaagctcgg atttcgtttc
       61 ccacttctgc acgtcaagga gcgttgccac gtgttggtaa aactctgcaa ccgataagcg
      121 tggattgaaa acgtaggcaa cgagaaccgt acgatcgagg cgttgcatca tccaacgcaa
      181 aatcgtcgtc ttgccggttc ccacctcgcc cgtaaccacg accaacccct tgccactctc
      241 aataccgtag tgcaggttcg ccattacttc tgtgtgcgat ggagtgaagt agatgaagcg
      301 cggatcgggc gttagcgcga agggcaactc ctttaaccca taaaattctg cgtacactct
      361 tttagacctc cagtgtggaa caaaaccgtt tcacgaatga ttacgaagta cgtgctgacg
      421 acaggaattc aaatacatga gtaagcttca gtgctaatgc cagaacaggg atactgacaa
      481 ccgtgaccgc cactccagcc gcgagcaaca gccgccgcct tcgaggaatt gctttcgcct
      541 cttgtggagt caacagttca ggaacagaga taagtactgg cagattggtg tagtgacgtg
      601 catcttcggc agtctgaatc gtcaacaatc gtggaacttc taacgctgcc gtcaggatca
      661 gaccaacgac cagacctaga ccaaatccga cgccaaaaag tatcaacctc tttggagcca
      721 ctggctgcga tggcaagttc gcggcatcaa ccactgcgat tccttcgccc tgctgttggt
      781 tcaaagcgtt cgcaccgagt gagattcccg cctgcttggc taagagtgaa tcgtaagcag
      841 ctttcttcgt ttgatagtcg cgatcgatcg cagcaagctg aacttcagcg ccaggtacca
      901 ggtttagtcg cgagagaagt tcgctaattt gcttttcgtt atcgctaagc gacgactgtt
      961 gccgtttgat ttcgctttca gcgagcttga tttcctgctc aacactattc gcagtcaggt
     1021 ccgggcgctt gtccagcttt tcctgcttct ccttgatctt gattttccaa tcggagacca
     1081 tttcttccat g
//
LOCUS       DATCGC010000739         1519 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_243843, whole genome shotgun sequence.
ACCESSION   DATCGC010000739 DATCGC010000000
VERSION     DATCGC010000739.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1519)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1519)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1519
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_243843"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..838)
                     /locus_tag="VIJ87_07195"
     CDS             complement(<1..838)
                     /locus_tag="VIJ87_07195"
                     /inference="COORDINATES: protein motif:HMM:NF014042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconeogenesis factor YvcK family protein"
                     /protein_id="HEY5444246.1"
                     /translation="MIKGGQRLVALGGGTGLSTLLAGLKQLVGKTDDRVWIDSLSALV
                     TVSDDGGSSGRLRDELQMLPPGDIRNCIVALSEDSSLLSRLFRHRFRGDGELGGHSFG
                     NLFLAALTEVTGDFTEAVRLSSEVLASKGHIFPATISDVRLVAELEDGSLVRGETQIS
                     ASRTPIRSLRLEPEKCLPLPQALRALRSADVITVGPGSLYTSILPNLLVSQVARVIGT
                     SNATKIYVCNLMTQPGETDGYTARQHLETVKKFAPEIEFDFVVVNDRRISKQQAELYA
                     AED"
     gene            complement(940..>1519)
                     /locus_tag="VIJ87_07200"
     CDS             complement(940..>1519)
                     /locus_tag="VIJ87_07200"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5444247.1"
                     /translation="VKKTQKVAAVRALRPAPRHVSAPPPPRQPTQDESAALVAFERAH
                     KEFVRGRFAESRNQFRILLDKYSQVAEVAARARTYLAISESRLRTESMLPKDADSLYD
                     RGVIELNRGEYVAAQEMFERALKREPEAAHIHYGLAATRARLGSIDLALESLQRAVDL
                     QPNLRLRAQHDHDLNPLRNDPDFDRLIFSNPS"
BASE COUNT          378 a          397 c          386 g          358 t
ORIGIN      
        1 catcttcagc tgcatatagt tcagcttgtt gtttactgat tcggcgatcg ttgaccacca
       61 cgaaatcgaa ttcgatctca ggcgcaaact tcttaactgt ttccaagtgc tgtcgagctg
      121 tgtaaccgtc agtctcgcca ggctgagtca tcaggttgca cacatagatc ttggtcgcgt
      181 tgcttgtacc gattacgcgg gcaacttgag atacaagtaa gttaggaaga atgctcgtat
      241 atagcgagcc cggccctacg gtaatgacat cagctgaacg taacgcccta agagcttggg
      301 ggagcggcaa acatttctct ggttccaagc gaagactgcg aattggcgtg cgtgaggcgg
      361 agatttgcgt ttcaccacga accagcgagc catcctcaag ttccgcaacc aggcgcacat
      421 cgctaatggt cgccggaaag atatgtccct tgctcgccaa gacttcagat gaaagtctga
      481 ccgcctcggt aaagtcacca gtaacttcgg tcaacgcggc gagaaacaga tttccgaaac
      541 tatgaccgcc taactcgcca tcgcctcgaa accggtgtct aaacagacga gacaacaaac
      601 ttgaatcttc cgacagcgca acaatgcaat ttcgaatgtc gcctggagga agcatctgaa
      661 gttcatcgcg caggcgccct gaactaccac cgtcgtccga aaccgtcacg agagcagaca
      721 gactatcaat ccaaactcgg tcatccgtct tgccaaccag ttgtttcaaa ccagccagca
      781 gtgtagacag gcctgtaccg cctccgagag caactagtct ttgaccacct ttaatcattg
      841 attgttattt cgagtcagtc gaccagaatc atacctcata gacaaggttt aaggtggcca
      901 attgctgctt ggttgaaggg ttgaattaaa gtgatcaatt caggagggat tgctaaagat
      961 aagacgatcg aagtcgggat cgtttcgaag cggatttaag tcgtggtcgt gttgagcacg
     1021 aagtcgtaag tttggttgta aatcgacggc gcgctgcagg gattccaacg cgagatcaat
     1081 cgaacccaac cgagcgcggg tagctgccaa cccataatga atgtgagctg cttctggttc
     1141 cctctttagt gcgcgttcaa acatttcttg agccgcaaca tactcgccgc ggttcagttc
     1201 aatcacgccg cggtcatata atgagtcggc atccttcggc aacatgcttt ctgtgcgaag
     1261 acgcgattca gaaatcgcca ggtaagttcg cgcgcgcgca gctacttcag cgacttgtga
     1321 atatttatcc aagagaatcc ggaactggtt tcgcgactcc gcaaaccgac ctcttacaaa
     1381 ctctttgtgg gcgcgctcga atgccaccaa agccgctgat tcgtcctgcg taggctggcg
     1441 aggtggaggt ggagcactaa cgtgtcttgg cgcgggcctg agagccctga cggcagcgac
     1501 cttttgcgtc tttttgact
//
LOCUS       DATCGC010000740         2069 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_376124, whole genome shotgun sequence.
ACCESSION   DATCGC010000740 DATCGC010000000
VERSION     DATCGC010000740.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2069)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2069)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2069
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_376124"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1532)
                     /gene="asnB"
                     /locus_tag="VIJ87_07205"
     CDS             complement(<1..1532)
                     /gene="asnB"
                     /locus_tag="VIJ87_07205"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HEY5444248.1"
                     /translation="MCGIAGIINLEPTKHIGQMLQSIEHRGRDDQGEWLSDPIDDAGR
                     RVCFGHRRLSIIDTSAGGHEPMFSHDGRYVLTFNGEIYNYRELREQLRARGQQFRTNS
                     DAEVLLTAFAEWGLDCLQRLNGMFAFAIWDKHERKLTLARDHVGIKPLYYAHILPGHD
                     RPGAFVFASEIKAILATRLISPSLDPESLNQFLTFLWSPDPNTLFAGIKTIPPGHYLQ
                     FHDDELTVNQWWDVSFDQIQEGKDEKWWREQVLETLDRVVRMEMVSDVPLGSFLSGGI
                     DSSGIVAMMERHSAGRPISTYTVGIEQEDLRYDIIPDDVRWARRVNEQLQTDYHEIML
                     QPSVVDLLPKLVYHMEEPPIDMAIPSYLISRAARETLTVMLSGMGGDEVFAGYPRQMA
                     MKIASAFDPVPGMLRRPLMKTVARALPGGLPGKFTAPLRNAKKFARSAALDFEDRYLG
                     YGTYFTNDAKHRMYSDEWRSLTQELDPYVRHRAYFNRVSNADPLNQLLYVDLKTFLPC
                     LN"
     gene            complement(1588..>2069)
                     /locus_tag="VIJ87_07210"
     CDS             complement(1588..>2069)
                     /locus_tag="VIJ87_07210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444249.1"
                     /translation="EGGGRIVGEVCHFIDLMTFLTDAHPLSVFAQAMSAKSDKILDAD
                     SVFITLKFSDGSNGTIAYLGEGDKALAKERIEIFGAGRSFVLDDFRRALSYKDGRENQ
                     VALKTQDKGQADEVRAVCASILSGGVAPISLEELTTTTRATFRVLDSLREGLPMSVE"
BASE COUNT          514 a          567 c          504 g          484 t
ORIGIN      
        1 aagttcaggc aaggcagaaa cgtcttcaga tccacgtaca aaagttgatt caaaggatcc
       61 gcgtttgaca ctcgattgaa ataggcacgg tgccttacgt atggatccag ttcctgggtc
      121 aacgatctcc actcatctga gtacatgcga tgcttggcat catttgtgaa gtaggtgccg
      181 taacccagat accggtcttc aaaatccagc gctgcgctac gagcaaattt ctttgcgttc
      241 ctcaatggcg cagtaaactt acccggcaaa cctccgggta gagctcgcgc aacagttttc
      301 atcagcgggc gtcgcaacat accgggaacc ggatcaaatg ccgatgcaat cttcatcgcc
      361 atttgtcgtg gataaccggc aaacacctca tcgccgccca tcccggacaa cataacggtg
      421 agcgtctcgc gagctgcgcg cgaaattaga taactgggaa tcgccatgtc tatcggcggt
      481 tcctccatgt gatagacaag cttcggcagc agatcgacta ccgacggttg cagcatgatc
      541 tcgtggtaat cggtctgcaa ctgttcattg actcgacggg cccagcgcac gtcatccggg
      601 atgatgtcgt aacgtaaatc ttcttgttca attcctactg tgtatgtgct tatgggtcga
      661 ccagcgctgt gacgctccat catcgcaacg atgccggatg agtcgatccc cccggagaga
      721 aacgatccca acggcacatc cgaaaccatc tccatcctga cgactcgatc aagggtctca
      781 agcacctgtt cgcgccacca cttttcatct ttgccttcct ggatctgatc gaaggaaaca
      841 tcccaccact gattcaccgt caactcatcg tcgtgaaact gaaggtaatg tccgggtgga
      901 atagtcttga ttccagcaaa caaagtgttc ggatctggcg accagaggaa ggtaaggaac
      961 tggttcaacg attccggatc caatgacgga ctaatcagcc tggttgccag gatcgctttt
     1021 atctcagacg caaaaacaaa tgcgcctggt ctgtcgtgac ctggaagaat gtgagcgtaa
     1081 tagagtggct tgatgccgac gtggtcacgg gccagcgtga gttttcgttc atgcttgtcc
     1141 caaattgcga aagcaaacat gccgttcaga cgttggagac aatcaagacc ccattcagca
     1201 aacgcggtta acagaacttc agcatcgcta ttagttcgaa actgctgacc acgcgcgcgc
     1261 aactgttcac gtaattcacg atagttatag atctcgccat tgaaggtaag gacatagcgg
     1321 ccatcgtggg aaaacattgg ttcatggccg ccggcgctgg tgtcgatgat tgaaagtcga
     1381 cgatgaccaa aacatacacg acgtcccgca tcgtcgattg gatctgaaag ccactcgccc
     1441 tgatcgtcac ggccacggtg ctcgatactc tgaagcattt ggccgatgtg tttcgtgggt
     1501 tcgagattaa tgattccggc gatgccacac atgggaggag gtctttggac tttggacttt
     1561 ggactttgga ctttggactg acgcacctta ctcaaccgac atcggcaacc cctcgcgcaa
     1621 cgaatccaac acgcgaaacg tcgctctcgt ggtcgtcgtc agttcttcca aactgatcgg
     1681 cgcaactcca ccagagagaa tactggcaca cacggcacgt acttcgtcag cctggccttt
     1741 atcctgtgtc ttcaatgcaa cctggttttc gcgtccgtcc ttgtaactca gcgcgcgacg
     1801 aaagtcgtcc aacacaaacg accggcctgc accgaagatt tcgattcgct ctttcgcaag
     1861 cgctttgtca ccttcaccaa gatacgcaat ggtcccgttt gagccatcgg aaaacttcag
     1921 ggtgataaaa actgaatctg cgtccaggat cttgtctgac tttgcactca tggcttgggc
     1981 gaaaaccgac aagggatgtg cgtcagttaa gaacgtcatc aaatctatga aatgacaaac
     2041 ctcgccaacg attcgtccgc cgccttcat
//
LOCUS       DATCGC010000741         1058 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_80036, whole genome shotgun sequence.
ACCESSION   DATCGC010000741 DATCGC010000000
VERSION     DATCGC010000741.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1058)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1058)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1058
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80036"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..292)
                     /locus_tag="VIJ87_07215"
     CDS             complement(<1..292)
                     /locus_tag="VIJ87_07215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444250.1"
                     /translation="MHRVLDPRRDHSFAPTLCALAIMTKAPRPGTVKTRLQPPLSPEE
                     AAQLNVCFLRDIAAAIVSAGGESKGVGVFTPVGSEDDYVNVLPSDFALIPQRG"
     gene            679..>1058
                     /locus_tag="VIJ87_07220"
     CDS             679..>1058
                     /locus_tag="VIJ87_07220"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF016115.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016812 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in cyclic amides
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HEY5444251.1"
                     /translation="MSLLELQKVLVSKKFIDLTHEFAPGIPHWPGFPDEQQKTIYWYE
                     KQPGLMGDGFFAEVFTHVGQWGTHVDPPAHFHKGLRTVNQIELKEMILPLVCVDVHEE
                     CAKNSDYTLSIDRLKKWESDHGTIP"
BASE COUNT          267 a          247 c          265 g          279 t
ORIGIN      
        1 cgccacgttg cggaatcagg gcgaaatcag atggtaaaac attcacatag tcgtcctcac
       61 ttcccacggg cgtgaaaaca ccgacacctt tcgattctcc tcccgcacta acgattgctg
      121 cggcaatatc gcgcaagaaa caaacattta gttgagcggc ttcctcggga ctgagcggtg
      181 gttgtaatcg tgtcttcact gtcccgggtc gtggtgcttt ggtcatgatt gcgagcgcgc
      241 aaagcgtcgg tgcaaacgaa tggtctcgtc gaggatcaag aacgcgatgc atcgctaact
      301 gcttcgatcg atggacgaga gggaagcctt tttattccag gagttattca ccaatagatt
      361 cttaatcaac atgttgattc ccttgaaata ttcatcttca agctgggaac aacatttgtc
      421 atttgttggg tggctgcctc gtcgaattct aatcgaaccg atgtgaataa accgatagaa
      481 ctgaagtgaa tctgccgtat gacgaaaaac ggccgccgat tattacaact tgttcgaagt
      541 tgttggcttc tttttgcgca atgagttaac agcgtcggtg tgatgattcc atgcacaagg
      601 tttgtattta ctctcggaat tttagttggc ctggtttgct taggttcagc agcccaggga
      661 cgtgagccga ctccagaatt gtcgttactc gagctgcaga aggttcttgt cagcaaaaag
      721 ttcatcgatc taacgcatga gtttgctccg ggaattccgc actggcctgg ttttccggat
      781 gagcaacaaa agacaattta ctggtacgaa aaacaacccg gcttgatggg tgacggattt
      841 ttcgcagagg tttttaccca cgtcggtcaa tggggcactc acgttgatcc accggcgcat
      901 tttcacaagg gtctgcgcac ggttaatcaa atcgaactca aggaaatgat cctaccgctt
      961 gtttgcgtcg atgtgcacga ggaatgtgca aagaattccg actacaccct ctcgatcgat
     1021 cggttgaaaa agtgggagtc agaccacgga acaattcc
//
LOCUS       DATCGC010000742         2988 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_110106, whole genome shotgun sequence.
ACCESSION   DATCGC010000742 DATCGC010000000
VERSION     DATCGC010000742.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2988)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2988)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2988
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110106"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..252)
                     /locus_tag="VIJ87_07225"
     CDS             complement(<1..252)
                     /locus_tag="VIJ87_07225"
                     /inference="COORDINATES: protein motif:HMM:NF013995.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EVE domain-containing protein"
                     /protein_id="HEY5444252.1"
                     /translation="MKKATKNSYWMVKQEPETYSWDDFVKDGATDWSGVRNYQARNNL
                     RGMKVGDRVLFYHSGKGKEVVGLAEVTKSAYQDPTSNDEQ"
     gene            420..878
                     /gene="bcp"
                     /locus_tag="VIJ87_07230"
     CDS             420..878
                     /gene="bcp"
                     /locus_tag="VIJ87_07230"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: protein motif:HMM:NF006960.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HEY5444253.1"
                     /translation="MPKEGTTAPAFKTTDANGETVSLKDFRGQKVVLYFYPKDDTPGC
                     TKEACSFRDSFSTYKKKGITILGVSPDSEKSHQKFVTKYKLPFTLLADTDHSIADAYG
                     VYGEKKFMGRTYMGIHRTTFLIDEKGKIKKVFEKVKPEDHANEVLGAFAE"
     gene            complement(915..1523)
                     /locus_tag="VIJ87_07235"
     CDS             complement(915..1523)
                     /locus_tag="VIJ87_07235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444254.1"
                     /translation="MNPDKELSPGIKHCPICAKDLSIADFGICRARKDGRNLYCKSCI
                     RNKVTQSRRALKEYKSARKRYIAQQVDMTDLVGDDHSSNTHYAKSVSKLSPVERVRDA
                     IRRGAKTQKEIAQETKLGKDEIGDALANLLLWTREIRTQVQDNTRWYFLNDSAEDANQ
                     EDNPRLPARKGDVPSSFSCLHGLMPGKNPEGEPEKIGGWVAA"
     gene            complement(2501..2911)
                     /locus_tag="VIJ87_07240"
     CDS             complement(2501..2911)
                     /locus_tag="VIJ87_07240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444255.1"
                     /translation="MAGYSGTPLPKKLGLKEKQRIALINEPANFQKQLGKLPDDTVIV
                     GKLSAPLDLVMLFVDREKALAKQFPALAKKLSSNGMIWVAWPKKSSGVPTDLAFDSVQ
                     RIGLDCGLVDVKICAVDEVWSGLKFVIRLKDRKK"
BASE COUNT          757 a          749 c          683 g          799 t
ORIGIN      
        1 ttgctcgtca ttacttgtag gatcctggta cgcacttttg gttacttcag ccaggccgac
       61 aacttccttt cccttgccgg aatggtagaa caacactcga tcgccaactt tcatccctcg
      121 aaggttgttt cgcgcctggt agtttctgac accggaccag tcagtcgctc catcctttac
      181 gaaatcgtcc caggagtaag tctcgggttc ctgctttacc atccagtaac tgttctttgt
      241 cgcctttttc atttgctcat ctcgaaattg atctgttgtc cgatatgctt tagcttgtcg
      301 tgacgacttc agattgaaga ttgctggcta gggattgagc cgtgcgaatg tagctgctcc
      361 aatctgaaat ctgaaatcat cacgagaagc taaagcatat cggacattgg agaaaataaa
      421 tgcctaaaga gggaaccact gcgcctgctt tcaaaaccac cgatgctaac ggtgaaacgg
      481 taagcctaaa agattttcgc ggtcaaaagg ttgtacttta tttctatcca aaagacgaca
      541 caccaggctg caccaaagaa gcatgttcgt ttcgcgattc gttttcgacg tataagaaga
      601 aaggcatcac tatcctgggg gtgtctcccg acagcgaaaa gtctcaccag aagttcgtca
      661 caaaatacaa actcccgttc accttgctag ccgataccga tcactcgata gcggacgctt
      721 acggcgttta cggtgagaag aagtttatgg ggcgaaccta catgggtatt catcgaacga
      781 cttttttgat cgatgagaag ggtaagatca agaaagtctt tgaaaaggta aagcccgaag
      841 atcatgccaa tgaggtactc ggggcttttg cggagtaaca gcaatcttga actatccgag
      901 gacccacccg gcggctaggc tgccacccag ccgccaatct tttcgggttc accttcgggg
      961 ttcttacctg gcatcaaacc atgcaaacaa ctaaacgagc tcggcacgtc gcctttgcga
     1021 gccggaagac gtggattgtc ttcctgattt gcgtcttcag ctgaatcgtt cagaaagtac
     1081 caccgggtat tgtcctgaac ttgagtgcga atctcgcgcg tccacagcag aagattcgct
     1141 aaggcgtcgc caatttcatc cttgcccagc ttcgtttcct gggcgatttc tttttgggtc
     1201 ttcgcacctc tccgtatcgc gtcgcgaacg cgctcaactg gagacaattt actaacagac
     1261 ttagcgtagt gagtgtttga tgaatggtca tcaccaacca ggtcagtcat gtcgacttgt
     1321 tgagcgatgt atctcttgcg cgcggacttg tattccttca acgcgcggcg gctctgcgtg
     1381 accttattgc gaatgcaact cttgcaataa agattgcggc catcttttct cgctcgacaa
     1441 ataccgaagt cggcgatcga aagatctttc gcgcaaatcg ggcagtgctt gataccgggg
     1501 gagagttctt tgtctgggtt catatccgca ctccgctaga acaacgttga gggcgaccac
     1561 tttttagaaa acacttcccc ttggtccggt ctaggagagc gcccggccag gagttctgtt
     1621 tttaggttta ttgattggcg aaggtgccca aatcgggggc gatcgcctgg attgccttgc
     1681 gcaacttctc tgaacgctgc gccccaacac ttaactgaac ttgataatcg atgaaggcgt
     1741 ccgggcaatt gcgagaaaca tgagagcgag taaaccttca aacgaatcaa acatcaggtc
     1801 gccaaaacta actaccggca atcaaacgct tcagcgaggg aatcgcatta tagtgatcga
     1861 aagttttttt gcaaggccca aagtgaaact tttgagctgc gaaacgaggc aaaaattttt
     1921 atgaattaat aacgtcgcgg agtcccactt tttcagttcg caaacaactc tcatacgtga
     1981 ggatagatga tcacatcaca ctcttcttga tgttcgcttc atgactgcaa tgctgcttac
     2041 gtgtgcaaac taactggacg aattgttaag aaaactgaat gcgatccgaa aatcaaaaaa
     2101 ctgttcgccg tatgttggcg caaatagttc cgatcgtttt cttgcgtatc cacaattagt
     2161 tgagccttcg atttgtgatc gataagcttt gcagtgcggc gcctcgtcac cgcattggta
     2221 tattcgaaag atccgcacta acaaagcggt ggacgaggac cgcactctaa atcaaaaatc
     2281 aatcgcaatg tacgcgatgg tccacagaca aatcgtcgtt gatcgaatgt ccttaagctc
     2341 aacgtgttgt aatagaaaga ttttttcgcg cgccgctcgc gtgtgcaaag tgttctaagt
     2401 gtgcgcttgt aacagctttg taaaacgagg acggtggatt tccacaagga tttcctcaga
     2461 agctgtggaa aactttactg aggtccggca acacaactaa ctacttcttt cgatctttca
     2521 agcgaatcac aaactttaac cctgaccaga cttcgtcaac ggcgcagatc tttacgtcaa
     2581 ctaacccgca gtccagtccg attcgttgca cgctgtcaaa agctaaatct gtcggtactc
     2641 ctgaactttt cttgggccac gcaacccaga tcattccatt gctagaaagc ttctttgcta
     2701 aggccggaaa ctgtttggcc agtgccttct ctcgatcaac aaacaacatg accaaatcaa
     2761 gtggcgcact caacttcccc acaatcacgg tatcgtccgg aagctttcca agttgttttt
     2821 gaaagttcgc cggctcattg atcaaagcga ttcgttgctt ctctttgagg ccgagcttct
     2881 taggtagtgg ggttcctgag tatccagcca tgcttctaag ctcttctcac tttggattct
     2941 taagtcctgt ccgtaacttg tttccaactt ctctcaagac tcgaggcg
//
LOCUS       DATCGC010000743         1161 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_80049, whole genome shotgun sequence.
ACCESSION   DATCGC010000743 DATCGC010000000
VERSION     DATCGC010000743.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1161)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1161)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1161
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80049"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1161)
                     /locus_tag="VIJ87_07245"
     CDS             complement(<1..>1161)
                     /locus_tag="VIJ87_07245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444256.1"
                     /translation="HSPTDGDQNVPPWPATLEWEDQPDEIEWEVQTSTSPNFDRDLLT
                     KDTLVSTRPPGQSASSSVDFNLKPDTNYYWRVRAKRTPASGSSSGKSGTDGKVAVQPS
                     PVLISQTGWGDWSLLRYFKTHTRASTLKSPLGTSPKVYPWGDNKFTWTDVKGGKEYLL
                     QTSEDEDLGIGSNLGPGKAVQGSPQMGQPNNPLQSISLSSVLVDPSDPDNTEGGNLIK
                     HGLPFALKVSHTYYWGVLPYGPDNIQGNWSNDQKGQIFETSNPRTKLASPENAATVSP
                     WGIPLQWEETRGTVGYVLRVSTHPDLSENIYSGPDPDSTSQVLSLSVDTGEGAGLAQN
                     SQIGISSNPVVEGLRRDYYWSVTPKGPPPFNEKGRASEVWGFNIDRQATKPVL"
BASE COUNT          264 a          306 c          312 g          279 t
ORIGIN      
        1 taggaccggt ttcgtcgcct ggcgatcgat gttgaatccc caaacttctg acgcccgacc
       61 cttctcattg aagggaggcg gcccttttgg cgtaaccgac cagtagtaat cccggcgcaa
      121 tccttcgacg accggattcg aggaaatacc gatttgtgaa ttttgcgcca agccagctcc
      181 ctctcccgta tcgaccgaca ggcttagcac ctggctggtg ctgtcaggat ctggaccact
      241 gtaaatgttc tcagagagat ccggatgggt cgagactctt aagacataac cgaccgtccc
      301 gcgtgtctct tcccattgca atgggattcc ccacggcgac acggtcgcgg cgttttctgg
      361 cgaagcgagt tttgtccgag gattggaagt ctcaaaaatt tgaccctttt ggtcgttaga
      421 ccaattaccc tgaatattat caggaccgta gggcagaaca ccccaataat aggtgtggct
      481 cacttttagg gcgaagggga gaccatgctt tataagattg ccgccttcag tgttgtcagg
      541 atcgctcgga tcaacaagga cactggaaag agagatggac tgtaagggat tgttcggctg
      601 acccatctgg ggagaaccct ggacggcctt gcccggtcct agattcgatc cgatgcccag
      661 gtcttcatct tctgaagtct ggagcaaata ttctttgcct ccttttacgt ctgtccacgt
      721 gaacttgtta tcgccccaag gataaacttt cggcgacgtt cccagggggg atttcaaggt
      781 ggaggccctg gtatgagttt tgaagtaacg cagaagcgac caatcccccc accctgtctg
      841 cgagatgaga actggcgaag gctgaaccgc gacctttcca tccgtgccac tttttcccga
      901 ggaagatccc gaggcgggag ttcgctttgc ccgaacacgc caatagtaat tagtgtctgg
      961 tttgagattg aaatcgaccg aagaagaagc ggactgacca ggaggcctgg tcgaaaccag
     1021 ggtgtctttc gtcagcaaat cacgatcgaa atttggagaa gtcgaagttt gcacctccca
     1081 ttcgatttca tcgggctgat cctcccactc cagcgtagcc ggccagggag ggacgttttg
     1141 atcaccatca gtagggctat g
//
LOCUS       DATCGC010000744         1031 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_143680, whole genome shotgun sequence.
ACCESSION   DATCGC010000744 DATCGC010000000
VERSION     DATCGC010000744.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1031)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1031)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1031
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_143680"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            58..>1031
                     /locus_tag="VIJ87_07250"
     CDS             58..>1031
                     /locus_tag="VIJ87_07250"
                     /inference="COORDINATES: protein motif:HMM:NF017215.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase family protein"
                     /protein_id="HEY5444257.1"
                     /translation="MVLIKLRTHPVPRGGANLMPLRTARAHTRPTGQILKKNPVVRVG
                     IDTGGTFTDFIFEHNGRLDLFKVSSTPSDPSVAIQKGLEHIAELTGCQSEQFRIVHGT
                     TVGTNALLQRRGARTALVTTSGFEDVLMIGRQARPELYNLNAIKPDPLVSDELRFGLR
                     ERVVASGEVLESLSDSEIRRIRDAVEKSGAESVAICLLFSFLHPQHEERIAESLATLK
                     VPLSVSSKILPEYREYERTSTVVINAYLQPLMGTYLNRITRLTVSRKSRDNTQFRVMQ
                     SSGGSVSAELAAQEPVRTILSGPAGGVVGALRASKEAGFKNVITFDMGG"
BASE COUNT          259 a          260 c          275 g          237 t
ORIGIN      
        1 cagccagacc tgagcaaaga agtttggatc tcgagtctgg gccatccgct accgcgaatg
       61 gtactgataa agcttcgcac ccacccggta ccacgaggtg gtgctaacct catgccactg
      121 cgaactgcaa gagcacacac aaggccaacc ggccaaatcc tcaaaaagaa tccagtcgtt
      181 cgagtgggca tcgatacggg cggcaccttc actgatttca tctttgaaca caacggacga
      241 ttagatctct tcaaagtttc ttccactcct tcagatcctt ccgtcgcaat tcaaaaaggc
      301 ctcgaacata tcgcagagtt aacgggttgc caatcagagc aatttcgaat tgttcatggc
      361 acaactgtcg ggacgaatgc gttgttgcag cgacgaggag cgcgaacggc gctggttaca
      421 acctcaggct ttgaagacgt attgatgatc ggcaggcaag ctcgtcctga actctacaac
      481 ctcaacgcga tcaaacctga tcctcttgtg agtgatgagt tgcgctttgg gttacgcgaa
      541 cgggttgttg caagtggcga agtgcttgag agtttgagcg attcagagat tcgacgtatt
      601 cgcgacgctg ttgaaaagag cggcgcagag tcggtggcga tttgtttgct cttctctttt
      661 cttcatccgc aacacgaaga gcgaattgcc gagagcctgg caactttaaa agtgccgctt
      721 tctgtttcga gcaagatcct gccggagtat cgcgaatacg agcgcacctc aacagttgtc
      781 atcaatgcct acctgcaacc gctaatgggt acgtatttga atcgcattac aagattgaca
      841 gtctctcgga aatccaggga caacactcaa ttccgtgtga tgcaatcgtc cggtggaagt
      901 gtgtcggcag aattggcggc gcaagaacca gtcaggacaa tcctgtcggg gccagccgga
      961 ggtgttgttg gcgcactgcg tgcttcgaag gaggcgggat tcaaaaacgt aatcacgttc
     1021 gacatgggag g
//
LOCUS       DATCGC010000745         1077 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_376223, whole genome shotgun sequence.
ACCESSION   DATCGC010000745 DATCGC010000000
VERSION     DATCGC010000745.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1077)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1077)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1077
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_376223"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..718)
                     /locus_tag="VIJ87_07255"
     CDS             complement(<1..718)
                     /locus_tag="VIJ87_07255"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY5444258.1"
                     /translation="MTSSNGHLLDVKDLRTYFETEDGVVKAVDGISFSLVRGETLGIV
                     GESGSGKSVTNLSIIRLILDPPGKIVSGEIVFNGQDILLLPAEEVRKIRGRRIAMIFQ
                     DPMTSLNPFLKISRQLMEMTQLHLGHSKAQAYEHAIKMLEMVGIPDARTRVDNYPHEF
                     SGGMRQRVMIAMALSCEPELLIADEPTTALDVTIQAQILELIKKLKQETGTSVILITH
                     DLGVVAGMTDHVIVIYAGKVF"
     gene            complement(734..>1077)
                     /locus_tag="VIJ87_07260"
     CDS             complement(734..>1077)
                     /locus_tag="VIJ87_07260"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5444259.1"
                     /translation="NQEFVLAARATGVSTFRIIFRHIVPNTLGPVIVYATLTIPQVML
                     TEAFLSFLGFGVQAPLASWGSLASDGAQNIAIFPWQMIFPGVTMALTLFSLNFLGDGL
                     RDALDPQMRTD"
BASE COUNT          262 a          289 c          268 g          258 t
ORIGIN      
        1 cgaaaacttt gccggcatag atcacgatga cgtggtccgt cattccggcc acaacgccga
       61 gatcatgtgt aatcaggatg acgctggtac ccgtttcttg tttgagcttc tttatcaact
      121 ccagtatctg cgcttgaatc gttacgtcca gggcggtagt aggttcatcg gcgatcagta
      181 gttcgggctc gcacgaaagg gccatcgcga tcatcactcg ctgacgcata ccgccggaaa
      241 attcgtgtgg atagttgtct acccgcgttc gtgcatccgg gatcccgacc atttccaaca
      301 tctttatagc gtgctcatac gcctgtgcct tgctgtgacc aagatgcaac tgcgtcattt
      361 ccattagctg cctggaaatc tttaggaaag gattcagcga cgtcatcggg tcctggaaga
      421 tcatcgcaat gcgtcggcca cgaatctttc gcacctcttc agccggcagt agaagaatgt
      481 cctggccgtt gaaaacgatt tcaccagaaa caatctttcc cggtgggtct agaataagac
      541 gaattataga caggttagtg actgacttgc ccgaacctga ctcaccgacg attcccaggg
      601 tctcgccacg caccaggcta aacgaaattc cgtcgacagc cttcacgacg ccgtcttcgg
      661 tctcgaagta agttctcaaa tcttttacgt cgagaagatg tccgttactt gaagtcatac
      721 tctgttcagc gtgttagtca gttcgcattt gcggatcgag tgcgtctctc aatccgtcac
      781 caagaaagtt cagagaaaac aacgtgagag ccatggtcac tccgggaaag atcatctgcc
      841 acgggaagat tgcgatgttc tgtgctccgt ctgacgccag gcttccccac gaggccaaag
      901 gcgcctggac cccaaagccg aggaacgaga gaaacgcctc agtcaacatc acctgtggaa
      961 tcgttaaggt tgcgtacacg atcacaggac caagagtgtt cggaacgatg tgacgaaaga
     1021 ttattcgaaa cgttgagact ccagttgctc tggctgccag gacaaactcc tggttct
//
LOCUS       DATCGC010000746         1478 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_276439, whole genome shotgun sequence.
ACCESSION   DATCGC010000746 DATCGC010000000
VERSION     DATCGC010000746.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1478)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1478)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1478
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_276439"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(14..604)
                     /locus_tag="VIJ87_07265"
     CDS             complement(14..604)
                     /locus_tag="VIJ87_07265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444260.1"
                     /translation="MKRGLLASLIITVISVAVLAQDHTRPRSTPSPIVRPTPSTQPTP
                     IPNPEGWVTFNNEAGRFSVLMPEIPTDKAETVPSDPGPYTTHLFIVSGTQSIFLIGWV
                     DYDPKFNFNPTQELDLNRENFIKGVNATLVNSQRITIDGYQAIEFTAESPNRVFKSRV
                     LMVGRRPYQLVTGTTKGLDDSVNVKRFFDSFKVRLH"
     gene            799..>1478
                     /locus_tag="VIJ87_07270"
     CDS             799..>1478
                     /locus_tag="VIJ87_07270"
                     /inference="COORDINATES: protein motif:HMM:NF012239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="HEY5444261.1"
                     /translation="MDLIETTQPEFAKASPLVAIVGRPNVGKSTLFNRLIGERRSIVG
                     DEPGITRDRIYGEVDWRGVTFSLIDTGGMVPDDDAVIPANIFKQAGVAIEEAQVLVWV
                     VDARKGITQLDEELATHLRSTGKRVLIAANKVDSATLENERGEFYRFGFDEVFAVSAE
                     QGIGVGELLDAVIDLLREELTDLDQKEEVEESKELLLAIIGRPNVGKSSLLNRLIGED
                     RVIVSPLAG"
BASE COUNT          357 a          327 c          401 g          393 t
ORIGIN      
        1 cgaatctaga gtgctaatgc agccgaacct tgaatgagtc aaagaaccgc ttgacgttga
       61 ccgaatcgtc aagtcctttc gttgtacctg tcacgagctg ataaggccgg cgtccaacca
      121 tcaatactcg agatttaaaa actctgtttg gtgattcggc ggtgaattca attgcttgat
      181 atccgtcgat tgtaattctt tgactattga ccaaggttgc gtttacgcct ttgatgaagt
      241 tctcgcggtt caaatccaat tcttgcgttg gattgaaatt aaactttgga tcgtagtcga
      301 cccatccaat taagaagatg ctctgcgttc cgctcacgat gaagagatga gtcgtatatg
      361 gcccgggatc gctcggaacg gtttctgcct tgtctgtcgg gatctccggc atcagcacag
      421 aaaaacgacc cgcttcgttg ttgaatgtca cccaaccctc aggatttggt atcggcgtgg
      481 gttgagtact tggggtgggt ctgacaatcg gactgggcgt tgagcgagga cgggtatggt
      541 cctgagcgag aaccgcaacg ctgattacgg ttattattaa tgaagctagt aaaccccttt
      601 tcatgctcca aaatcctccg gctgcaatct cgacttagta tctaagcctt atacctatga
      661 gtggtttagt agtcaattaa tctctaccgc tgcgggggcg gttagagttc tcgctgcctt
      721 ggtcgctgga attagtttga gttttcgcct acgttatgcc gttcgcggat agcggtgatt
      781 cttccgccaa ataaataaat ggacttaatt gaaacaacac aacccgaatt tgcaaaggcg
      841 tcgcccctgg tcgcaattgt aggccgaccc aatgtgggta aatccaccct attcaaccgt
      901 ctgataggcg agcgccgctc gatcgtagga gatgagccag ggattacgcg agatcggatc
      961 tatggcgaag tcgactggcg tggtgtcact ttctccttaa tagatacggg aggaatggtt
     1021 cctgacgacg atgcggttat tcccgccaat atattcaagc aagcaggcgt tgctattgaa
     1081 gaggcccagg tactggtctg ggttgtagat gcacgaaagg gaattacgca gctcgacgag
     1141 gaacttgcca cacacttgcg atccacagga aagagagtgc tgattgctgc taataaagtt
     1201 gactcggcaa cccttgagaa tgagcgaggc gagttttatc ggttcggctt tgatgaagta
     1261 tttgctgtgt cggcagagca gggaatcggt gtcggtgagt tactcgacgc agttatcgac
     1321 ctgttgcgag aagaattaac cgacctcgac cagaaggagg aggttgagga gtcgaaagag
     1381 ttactactgg cgataattgg gcggccaaat gttggcaagt cttcactttt gaatcggttg
     1441 attggtgaag accgcgtgat cgtttctcca ctagctgg
//
LOCUS       DATCGC010000747         1710 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_343059, whole genome shotgun sequence.
ACCESSION   DATCGC010000747 DATCGC010000000
VERSION     DATCGC010000747.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1710)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1710)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1710
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_343059"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1710)
                     /locus_tag="VIJ87_07275"
     CDS             complement(<1..>1710)
                     /locus_tag="VIJ87_07275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444262.1"
                     /translation="LQGTTNFINVPLGGGRPDIQFGTATNFSAQPVNTYDYLARIDWS
                     SSAKNSASFRYLATSQLFSNQFPDPSTGIAGSQFPGFEIDVPSLTQNFYMSDTYVFTP
                     RTLNEARFGYGRFNLQFGPRDAALTTSGPQFLFSGTTISTVGLSPSFVQGRIFNNFQW
                     QDTVTHTHGNHTLRVGVDILQQRAKQFVPINTRGQLTFAGGGGFPAFGNFVDSFSGVG
                     SGAASKVFGNGFDYPNVTTQAYFINDSWKVRQNLTLNFGLRYEHFGAVANNAPFPAFT
                     GFTAPLQTRVEQQTDNNNFGPRLSFAYSPHFESAWLGRVFGSDLTVIRGGFAINYDVF
                     FNNILSNIMATSPNALGTTVTGATFGGRGIPNFTSSSLPSTLVANPQATQNTLPSDLK
                     NPQTYVWNFGIQRELPGHNILDVAYVGTRATRLFINEQLNPGIVGSLNANGRAFGTRG
                     SVISRTNGGDSIYHGLQARVERSFRNNFLYRATYTYQKTIDNTNSEVFATTGGNSVGS
                     NPFDRSVDRGVADFDVPHIFTLSGLWEIPAVGSGFWRAVSGGFQFSTIWRYQSGNVSS
                     PFLT"
BASE COUNT          422 a          435 c          465 g          388 t
ORIGIN      
        1 gtgagaaatg gcgacgacac gtttccagac tgataacgcc agatcgtcga gaactgaaat
       61 cctccggata ctgccctcca aaaaccggaa cccactgcgg gaatctccca caaacccgac
      121 agggtaaaaa tgtgcggcac atcgaagtca gcgacgccgc ggtcaacgct ccggtcgaac
      181 ggattcgacc caacgctgtt tcctccggtg gtcgcaaaga cctcactgtt cgtgttgtcg
      241 atcgtctttt ggtaggtgta agtcgcgcga tagagaaagt tgtttctgaa acttctttca
      301 acgcgtgctt gcaagccgtg atagatagaa tcgccgccgt tggttcgcga gataacagag
      361 cccctcgtac caaatgcacg accattcgca ttcaggcttc ctacaatacc gggattcaac
      421 tgctcgttga tgaacaatcg agttgcgcga gtgccgacat aggcgacatc gagaatgttg
      481 tgtcccggaa gttcccgctg aatcccaaag ttccagacgt acgtctgtgg gttcttcaga
      541 tcagaaggaa gcgtgttctg agtcgcttgt ggatttgcga ctagagttga cggtaacgaa
      601 ctcgacgtga aattaggaat accacgtcca ccgaacgtcg cgcccgtgac ggttgtgccg
      661 agtgcattcg gcgacgtagc catgatgttg ctcagaatgt tgttgaagaa cacatcatag
      721 ttgatcgcga atccacctcg aatcacggtc agatccgaac caaacacgcg gcccaaccag
      781 gcggactcga aatgcggtga ataggcaaaa ctcaagcgtg gaccgaagtt gttattatca
      841 gtttgttgct caactcgcgt ttgcagtgga gcagtgaatc cggtgaacgc ggggaacggt
      901 gcgttgttgg cgacggcgcc aaagtgttca taacgcaatc caaagttcag cgtcaggttt
      961 tgtcttactt tccaactgtc gttgatgaag taagcctgag tcgtaacgtt tggataatcg
     1021 aagccatttc caaatacctt cgacgctgcg cccgagccca cacccgagaa cgaatcaacg
     1081 aagtttccaa acgccgggaa gccaccgccg ccagcaaacg tcaactgtcc gcgagtattg
     1141 atgggaacga actgcttcgc tcgctgttgc agaatgtcga ctccaacgcg cagtgtgtga
     1201 ttgccgtgcg tatgggtaac ggtgtcctgc cactgaaagt tgttaaagat ccttccctgc
     1261 acaaaactcg gcgagaggcc gactgtcgag atggttgttc cagagaagag gaactgcgga
     1321 ccactggtgg tcaaggccgc atctctcggc ccgaactgaa ggttgaagcg cccgtatcca
     1381 aagcgcgcct cgttaagagt tcggggtgtg aatacgtatg tatcgctcat gtagaaattc
     1441 tgcgtcagcg atggtacgtc gatctcaaaa ccggggaact gactgcctgc gatgccggtt
     1501 gatggatctg gaaactgatt actgaacagt tggcttgttg ccaggtaacg aaatgaagcg
     1561 ctgttctttg ccgacgaact ccaatcgatt cttgcgagat agtcgtacgt gttgacgggc
     1621 tgggcactga aattcgttgc tgtaccaaac tgaatatcag gtcgaccgcc gcccagcggg
     1681 acattgataa agttagtggt tccctgcaga
//
LOCUS       DATCGC010000748         3147 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_343062, whole genome shotgun sequence.
ACCESSION   DATCGC010000748 DATCGC010000000
VERSION     DATCGC010000748.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3147
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_343062"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(202..987)
                     /locus_tag="VIJ87_07280"
     CDS             complement(202..987)
                     /locus_tag="VIJ87_07280"
                     /inference="COORDINATES: protein motif:HMM:TIGR03891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiopeptide-type bacteriocin biosynthesis
                     protein"
                     /protein_id="HEY5444263.1"
                     /translation="MEKLEWLQAEGSLFPQLDGTPFLPWKSLQEAVEEWRADDLYQWF
                     WFVRKMPGLKLRFGGPDINAHLQALLAEWLHAAERSNAIRGFRFTVYEPEVHRFGGDA
                     GMALTHSHFNSSAKLFLHYEARTETTASERLSFSLANTSDLLQRALADEAEIWDVWQR
                     LYAAVGENAIETTETLPNFEELSEQSPGLGDLIVSAQNANAACADSLRALVEGGVLTV
                     GIRAWLTAVTTFEWNRFGLPDHPDALAAAIATILRQQQPDTFS"
     gene            complement(987..>3147)
                     /locus_tag="VIJ87_07285"
     CDS             complement(987..>3147)
                     /locus_tag="VIJ87_07285"
                     /inference="COORDINATES: protein motif:HMM:NF016615.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lantibiotic dehydratase"
                     /protein_id="HEY5444264.1"
                     /translation="GVQPWELPNERQQKLLGADFARQLELENEQRLRLIALRRDFADE
                     YDLELRRQCSALRNTTRDVRFARALTLANPALAMRWEQTTDEAPRTKRVRHLERAVLH
                     YLLRAVGRPTPSDGWAGVARIRLEQSRRELEVSAGITHCVAAPDLRPFREIVEFLAGS
                     VRYLEDWPLRLDPAAHLEDGSWWGIDVEGEWVQLPNNPTIEAITIVFLGGGQPTGAEL
                     IELLSVAHQKEDLVHSLEMLIDAGILRSSLEFPAAPTSAWDALESVTPQLLEPERSAW
                     LHAVERCQTACAGLAKAYERLPTTSVLQFHEEVRLAVAELCRQVGFQTTLPAQIIKLD
                     LAVPFEIRWSPQLMEQMRKAVVDVLEFHAEVGAAEVFRRELLNQLRGCSTTLAHLVRT
                     QPDLEGGATRAALACFKEWTVRQNRQESPVDGMPGPYGTLMFILGGDPITPYFTWGRS
                     APDFASCRAYELLDRTTQDLLFMSQLHGAGVRPVEVVGIDAANPNATIRLADRKDFEV
                     GRHAAATAAFSRIQIEVDGNARPWLRFPESNEAFVPTYSAPAGIGLNDPAGRFLVRLA
                     MAHGWEFISFGVPFAAVMADVEGAGPICVNEGDGVLGAQHWVLPADFVRELRAKNNLE
                     QYSMWRASIEQAGLGEWVWVGPATRPDAPRLLTRTDSPLLLSVVLEVHDENCESLVLT
                     RVPDPRHWPIKDDSGNHFLCELAITWADPEHWKEVRR"
BASE COUNT          753 a          916 c          792 g          686 t
ORIGIN      
        1 cgatgaggag cattaggcac aggaacctgc agtagtgaag tgacgcttat ctcttttcat
       61 tccaacctcc tcggaatcgt ctgagaagag caacgacgag ctcactctcc agctcatcag
      121 aaataggtga atttccatag catagtcgag aagatgtaca agggaacgcc tgtcttgaat
      181 tgaagagcac gcttaacgga atcaactaaa ggtgtcgggc tgttgctggc gaaggatcgt
      241 cgcgattgct gcggctaatg cgtcgggatg gtcaggtagt ccaaatctat tccattcaaa
      301 tgtggtgacc gcggtaagcc aggctcgaat tcctactgtg agtactccgc cctcgacaag
      361 tgctcggagt gagtcggcgc aagcagcatt agcgttctgg gccgagacga tgaggtcacc
      421 cagtccaggc gactgctccg acagctcttc gaagtttgga agcgtttctg tggtttcgat
      481 cgcgttctcg cccacagctg catacaagcg ctgccaaacg tcccagatct cggcctcatc
      541 agcgagcgca cgctgaagca gatcgcttgt gtttgctaac gagaaactaa ggcgttcaga
      601 ggctgtcgtt tccgttctcg cctcatagtg aagaaacagt tttgctgaac tgttgaagtg
      661 tgagtgcgtg agtgccatac ccgcatctcc gccaaaccgg tgaacctccg gctcatagac
      721 tgtaaaacgg aaaccgcgaa tcgcgttaga tcgctcagca gcgtgaagcc attccgcaag
      781 taacgcctgt aagtgcgcat tgatgtcagg accgccaaac cgcagcttaa gaccgggcat
      841 ctttcgtacg aaccaaaacc actgatagag atcgtcagct ctccattcct ctacagcttc
      901 ctgtagcgat ttccatggta gaaacggagt accgtcgagc tggggaaaca atgaaccctc
      961 cgcctgcaac cattcgagct tttccatcag cgccgcacct ctttccagtg ctcaggatca
     1021 gcccaggtta tcgccagctc acacaagaaa tgattaccgc tgtcatcctt gatcggccaa
     1081 tgtcgtgggt ccggcactct tgtcagaaca aggctttcgc aattttcatc atgaacctcg
     1141 agtacaaccg acaacagtag cgggctatcg gttcgggtca aaagtcgagg tgcatccggt
     1201 cttgtggctg ggccaaccca cacccactca ccaaggcctg cttgctctat cgaggcccgc
     1261 cacatggaat actgttcgag attattcttt gcccgcagct cgcgaacaaa gtctgccggc
     1321 aaaacccaat gttgcgcgcc cagcacaccg tcgccttcgt ttacacagat aggtccagct
     1381 ccttcgacat cggccattac ggctgcgaat ggaacaccaa atgagatgaa ctcccaacca
     1441 tgggccatgg ccaacctaac aagaaacctg ccagccggat cgtttaagcc tatccccgcg
     1501 ggcgctgaat aagtgggcac gaaagcctca ttactttcag gaaatctcaa ccacgggcgg
     1561 gcgttaccgt caacttcaat ttgaatcctc gaaaaggccg ccgtcgcggc ggcgtgacgc
     1621 ccaacctcga agtcctttcg gtccgccagt cgtatcgtag cgtttggatt ggcagcatcg
     1681 ataccaacaa cctcgacagg tcgaacgcct gcaccatgca gctgcgacat gaacaacaga
     1741 tcctgagtag ttcgatcaag gagttcgtat gcgcgacaac tggcaaagtc aggcgcactg
     1801 cgcccccagg tgaagtacgg cgtgatcgga tctccaccaa gaatgaacat gagcgtgcca
     1861 taaggtcccg gcatcccatc gacaggactc tcttgcctat tctgtctcac cgtccattct
     1921 ttgaagcatg ccaatgcagc tcttgttgcg ccgccttcca gatccggttg agttctgacg
     1981 agatgggcca gtgtagtact acagccacgc agttggttca gcaattcacg acgaaacact
     2041 tcggccgcgc ccacttcggc atgaaactcg aggacgtcga caactgcttt tcgcatctgt
     2101 tccatcaatt gcggggacca acgaatctca aacgggaccg caagatcgag tttgatgatt
     2161 tgcgcaggca gggttgtttg gaatccgact tgccgacaca actctgcaac tgcaagtcgt
     2221 acctcttcat gaaactgaag aactgaagtt gtaggcaatc gctcatatgc cttagcaagt
     2281 ccggcgcatg cagtctggca gcgctcgacc gcgtgcaacc aggcagacct ctcgggctcc
     2341 agtaattgtg gcgtgaccga ttcaagcgca tcccaggctg aagtcggagc agcgggaaat
     2401 tcaagcgatg aacgaagtat gcccgcgtcg atgagcattt ctaacgagtg caccagatcc
     2461 tctttctgat gcgccacact tagtaactca atcaattcgg cgcccgtggg ttggccacca
     2521 ccgaggaaga caatcgtaat cgcttcgatc gtaggattgt ttggtagttg gacccactcc
     2581 ccttcaacgt cgattcccca ccacgaacca tcttccagat gagccgcagg atcgagtcgc
     2641 aaaggccagt cttccaaata acgaacagag ccggcgagga actcgacaat ctctcgaaac
     2701 ggtcgcagat caggtgctgc gacacagtgc gtaatacctg cggaaacttc caattcacgt
     2761 cgagactgct cgaggcgaat tctcgccacg ccagcccaac cgtcgcttgg cgtcggtcgt
     2821 ccaacagctc tcagaaggta atgcaacacc gcacgctcta aatgtctaac gcgcttagtg
     2881 cgtggcgctt catcggttgt ttgttcccag cgcattgcca acgccggatt agctaaagtc
     2941 aacgctcgtg caaagcgcac atcgcgcgtc gtgttgcgta gcgccgagca ctgccggcgc
     3001 aattccaagt cgtactcatc ggcaaaatct cttctcagcg caatcagtct cagccgttgc
     3061 tcgttttcaa gctcaagctg ccgcgcaaaa tccgcgccca gtaacttctg ttggcgctca
     3121 tttggtagtt cccaaggctg cactccg
//
LOCUS       DATCGC010000749         1125 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_376298, whole genome shotgun sequence.
ACCESSION   DATCGC010000749 DATCGC010000000
VERSION     DATCGC010000749.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1125
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_376298"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(83..>1125)
                     /locus_tag="VIJ87_07290"
     CDS             complement(83..>1125)
                     /locus_tag="VIJ87_07290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444265.1"
                     /translation="GYRPDDSTFDRVNGRTKFHHISLKIKRAGKYNIRMRNGFYGVSD
                     EVITPTAGRTPQEQILNALTSPFARSGIHLHLTSLFVNDAQTGSAMRSMLHVDPRDID
                     FTQEPDGMHKAVFDILAVAFGDNGQVLEQFSYTQTLRIKDENFARVLNNGFTYHVTVP
                     VKKAGAYQLRTALRDKSSERLGSASQFIEVPDIKKNKLLLSGIVLRGMTLDAYLKNAG
                     VKNEEQTTNDIAVDALPKASPALRQFQTGMALAYGVTIYNAQLDKTSGKPNLKIQVRV
                     FRNGEQLFAGNELLYDATEQSDLKRLSVVGGIELGSAMAPGEYVLQIIVKDLVKEKPR
                     VATQWMDFEIVK"
BASE COUNT          274 a          289 c          259 g          303 t
ORIGIN      
        1 gttagtgttt cttttgatag cgaattggat tgcaaactaa acagcaaagc acaaagcact
       61 aagtacaacg ctcagccgtc catcacttca ctatctcaaa atccatccac tgtgtcgcaa
      121 ctctcggttt ctctttcacg agatctttaa cgatgatttg taacacgtac tcgcccggcg
      181 ccattgcact cccaagctca ataccgccta ccacgctgag ccgtttcaga tcggactgct
      241 cagtcgcatc gtagagcagt tcgtttccgg caaacagttg ctcgccattt ctaaatacgc
      301 gcacttgtat cttgagattt ggcttgccgc tcgtcttgtc gagctgagcg ttgtaaatag
      361 tgaccccgta agccagcgcc atgcccgttt gaaactgtcg caatgccgga ctagccttgg
      421 gaagagcgtc cactgcgata tcgtttgtag tttgctcttc gtttttcaca ccagcatttt
      481 tcaggtaagc atccaatgtc atgccgcgta aaacaatccc cgaaagcaaa agtttgttct
      541 tcttgatatc gggaacttca atgaactggg acgcagaacc aaggcgttcc gacgacttgt
      601 cacgcaaagc cgttcgtagt tgataagcgc ctgctttctt gacaggcaca gtcacgtgat
      661 aagtgaaacc attgttcaag acgcgcgcga aattttcatc cttgattcga agcgtttgcg
      721 tatagctgaa ctgttcgagt acctgaccgt tgtcgccgaa tgccactgcc agaatatcga
      781 atacagcctt atgcattccg tctggttctt gtgtgaaatc gatgtcccga ggatctacat
      841 gcagcatcga gcgcattgcc gatccggtct gagcatcgtt aacaaaaagc gaagtaagat
      901 gaagatgaat ccctgacctc gcaaatggag acgtcagggc gttgaggatt tgctcctgag
      961 gagttcgccc cgctgtcgga gtaatcactt catcgctaac gccgtaaaag ccgttacgca
     1021 ttcggatgtt gtattttccg gctcgtttta ttttgagaga aatgtggtga aacttcgttc
     1081 gaccattcac cctgtcgaaa gtcgagtcat cgggtcggta accga
//
LOCUS       DATCGC010000750         1001 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_276518, whole genome shotgun sequence.
ACCESSION   DATCGC010000750 DATCGC010000000
VERSION     DATCGC010000750.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1001
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_276518"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1001
                     /locus_tag="VIJ87_07295"
     CDS             <1..>1001
                     /locus_tag="VIJ87_07295"
                     /inference="COORDINATES: protein motif:HMM:NF019285.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside transporter C-terminal
                     domain-containing protein"
                     /protein_id="HEY5444266.1"
                     /translation="LAAGPGESGSIGFILVFQVLPVVIFFAAFTSVLYHLRVLQVFVR
                     LFARLFHRTMKISGAESLSSAANIFVGIESTLVVRPYLEKMTRSELLLVLTTGMGTVA
                     SSTLGVYVAFLMGVFPQIAGHLISASVLAIPACVVVSKLLIPETETPETFAAVPREDE
                     STRSKNLISAIIEGSMDGLKLAAGISALLIAILGLVALVDKVLGAGSSWLGMSEPLSF
                     VRLLSWAFYPFALLLGLQSSDVPIASHLLGERVILTEVFSYNHLAQLISSGQITDGRT
                     VVILSYALCGFAHVAAVAIFVGGTAALAPSRRDDLASLGLRALLAATLATLMTGCVAG
                     "
BASE COUNT          185 a          257 c          287 g          272 t
ORIGIN      
        1 cttgccgctg gtcccggaga gtcgggatcc atcggtttca tcctggtctt tcaagttctt
       61 ccggtagtca tcttttttgc ggcgttcacg tctgtgctct atcacctgcg cgttttgcaa
      121 gtttttgtac ggctgtttgc caggcttttc caccgaacga tgaaaatcag tggcgcagag
      181 tcgctctcaa gtgcggcaaa cattttcgtt gggattgaat caactctcgt ggttcgtccg
      241 tacctggaaa agatgacgcg ctcagagttg ttgctggtgt tgacgaccgg aatggggacg
      301 gttgcctcaa gtacgcttgg agtttatgtg gcctttctaa tgggagtgtt tccacagatc
      361 gcaggacacc tgatctcagc ttctgtcctc gccattccgg cttgcgtggt ggtctccaag
      421 ctactcatac cggagacgga aacgcccgag acattcgcgg cagttcctcg ggaagacgaa
      481 tccactcgtt caaagaatct aataagcgca ataattgaag gctcgatgga cgggctaaag
      541 ctggccgcag gaatctcggc gctgctgatt gcaatcctgg gattggtggc cctggtagac
      601 aaagtactcg gggccggaag ttcgtggttg ggaatgagcg aaccgctttc gttcgtgaga
      661 ctcttgagtt gggctttcta ccccttcgcc cttctacttg gattgcaatc gagcgatgtg
      721 ccaattgcat cgcacttgtt gggtgagcga gtcatcctta ccgaggtctt ctcatacaac
      781 catctcgccc agttgatctc cagcggacag ataaccgatg gtcggaccgt agtgattttg
      841 agttatgcgc tttgcggctt cgcacacgtg gccgcagtgg ctatctttgt gggcggtaca
      901 gcggcactcg ctccctcacg gcgcgacgat cttgctagct tgggtctacg cgcattgctt
      961 gctgcgacgt tagctacgct gatgaccggg tgtgtggctg g
//
LOCUS       DATCGC010000751         1084 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_409576, whole genome shotgun sequence.
ACCESSION   DATCGC010000751 DATCGC010000000
VERSION     DATCGC010000751.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1084
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_409576"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1084
                     /locus_tag="VIJ87_07300"
     CDS             <1..>1084
                     /locus_tag="VIJ87_07300"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5444267.1"
                     /translation="GAVFGLAPALQATRPSLLKSLKDNAAQGGASRTRLRSGLVVAQI
                     ALSLVVLIAAGLVVRTLQHLQTMNPGFESKNALMMSFDLGLQGYDEAKAQQFYRQLVE
                     RVQSVPGVQSSAITNSVPLSLNYNSRNVFVEGQPVERGANAPIAMAGNVGPRYFETMV
                     TPILQGREFTNQDTPKTESVAVVNETFVRRLMPFAKSSAEAVGRRFSFRGGEGPFVRI
                     VGVAGDGKYFNIGEEPRTFVWTPVSQDYSSSVSLIVRTKGAPEPMFGSVRREIQGLDP
                     NLPLFDVKTLNEHMRLSLFPARIAATVLGVFGLVALLLSAIGIYGITSYAVAQRTREI
                     GIRMALGAQLGDVLKLVLNHGVKLTLI"
BASE COUNT          222 a          259 c          331 g          272 t
ORIGIN      
        1 ggagctgtct tcggtcttgc cccggcgctt caggccactc gccccagtct cttaaagtca
       61 ctcaaggaca acgcggcgca aggtggagct agccggacgc gtttgcgcag tgggttggta
      121 gtggcccaga tcgctctgtc gttagttgtg ctgatcgccg ctggattggt ggtgaggacg
      181 ctgcaacatc tgcaaacgat gaacccgggt ttcgaatcga agaacgcgtt gatgatgtcg
      241 ttcgacctcg gtctgcaggg atatgacgag gcgaaggcgc agcagtttta tcgtcagcta
      301 gtcgaacgag ttcagtcggt acctggtgtt caatcttcag ctattacgaa ttcagtcccg
      361 ttaagtctca actacaacag tcggaatgtc tttgtcgaag gccagccagt cgagcgaggc
      421 gcaaatgctc cgattgcgat ggcgggaaat gttggacctc gttatttcga gacaatggta
      481 acgcccatat tgcaggggcg cgagttcacg aatcaggata cgccaaaaac tgagtcggtc
      541 gcggtcgtta acgagacgtt tgtcagacgt ctgatgcctt ttgcaaagtc cagtgcggaa
      601 gcagttggtc ggcgctttag tttcagagga ggggaaggtc cgttcgttag gattgtgggc
      661 gttgccggcg acgggaagta tttcaacatc ggggaagagc cacgtacatt tgtctggacc
      721 ccggtaagcc aggactactc ttctagcgtc tctttgatcg ttcgcacgaa aggcgctcct
      781 gaaccgatgt ttggaagtgt gcgtcgtgag attcagggcc tcgatccgaa tttgccgttg
      841 tttgacgtga aaacgctaaa cgagcacatg cggctgtcgt tgtttcccgc gcgcatcgct
      901 gcaaccgttc tgggggtttt tggactggtc gcgcttctgc tctccgctat cgggatatat
      961 ggcatcacgt cttatgcggt cgcacaacgg acgcgtgaga ttggaattcg aatggctctc
     1021 ggtgcgcagt taggcgatgt tttgaaattg gtactgaatc acggcgttaa gctgacgctg
     1081 atcg
//
LOCUS       DATCGC010000752         1154 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_276546, whole genome shotgun sequence.
ACCESSION   DATCGC010000752 DATCGC010000000
VERSION     DATCGC010000752.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1154)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1154
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_276546"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(117..725)
                     /locus_tag="VIJ87_07305"
     CDS             complement(117..725)
                     /locus_tag="VIJ87_07305"
                     /inference="COORDINATES: protein motif:HMM:NF024937.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4126 domain-containing protein"
                     /protein_id="HEY5444268.1"
                     /translation="MNLLSTLAIAMGSAWVSGINLYACVATLGLLSRFGHLQLPGELQ
                     VVTSWWVIGVALGLYVIEFVADKVPWIDTTWDVIHTFIRVPAGAVLAAGAFGDFDRSV
                     QVIALLLGGGLALSSHGTKAATRAVLNTLPEPITNVTASIIEDVLAIGSTIVSVFFPI
                     LLFVIVAVGVGISIYLFHRVLRFFSQVTHKVRSWFAPVSDML"
     gene            960..>1154
                     /locus_tag="VIJ87_07310"
     CDS             960..>1154
                     /locus_tag="VIJ87_07310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444269.1"
                     /translation="MSFPEPQSMLLHYRLLEKIAAGGMGDVYKAEDTKLGRTVALKLL
                     PQAVNQDPNARRRFLNEAQSV"
BASE COUNT          316 a          295 c          299 g          244 t
ORIGIN      
        1 tggcggggag ttgtttggct cgaaactcgt aaaccgttaa aacggttcct caaaattacg
       61 ccctactgta accccaagct gaagcttggg gagaatcaga gtttttgcaa gaggctctaa
      121 agcatatcgg acacaggcgc aaaccagctg cggactttgt gggtaacctg gctgaagaag
      181 cgaagaacgc gatggaacaa gtagattgaa atgccgacac caaccgcgac gatcacaaac
      241 agcaagatcg gaaaaaagac tgaaacgatc gttgaaccga tagccaggac gtcttcaatg
      301 atactggcgg taacgttggt gattggttct ggaagagtgt tgagcactgc tcttgtggcg
      361 gccttcgttc cgtgtgaact taaggcgagt ccaccgccca gaagtagtgc aatgacttgt
      421 acgctgcggt cgaagtcgcc gaatgctcca gctgccagaa ctgctccggc tgggacgcga
      481 atgaacgtat gaatcacatc ccacgtggta tcgatccacg gaactttgtc cgcgacaaat
      541 tcaatgacgt aaagaccaag ggcaacgcca atcacccacc aactcgtcac gacctggagt
      601 tcgccaggca gttgcaagtg gccaaagcga ctaagcaatc caagcgtcgc gacacaggcg
      661 tagaggttga tacccgacac ccaagcggaa cccatcgcga ttgccagcgt agagagcagg
      721 ttcatagagt aaaaacagag ctttgtgctt tgaacttcgt tttagagctt tgtcgcttcc
      781 gacaagtcta aggaactcct cgcttagcca atcacaaagt acaaaatcca acgtacaaag
      841 tacaaagtac aaagcacaaa gcacctagca ctcgttcttg cgtgcacgtt gcttccgccg
      901 aacgttttcc ttagagtgtc cggtcatatc gatgtacgcc ccgcagggct ggagggttca
      961 tgagttttcc tgagccgcaa tcaatgctgt tgcattatcg cctgcttgag aaaatagcgg
     1021 ctggcgggat gggcgatgtt tataaggccg aggacactaa actcggtcgt actgttgcac
     1081 tgaaactcct acctcaagct gtcaaccagg atccaaacgc caggcgcagg tttctcaacg
     1141 aggcccagtc agtt
//
LOCUS       DATCGC010000753         2447 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_409610, whole genome shotgun sequence.
ACCESSION   DATCGC010000753 DATCGC010000000
VERSION     DATCGC010000753.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2447)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2447)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2447
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_409610"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2447
                     /locus_tag="VIJ87_07315"
     CDS             <1..>2447
                     /locus_tag="VIJ87_07315"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF016859.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta''"
                     /protein_id="HEY5444270.1"
                     /translation="QDDVRRVINTTVGRVIFNDSIPAGLPFINGTLKKKGLQSLVNYS
                     HIRLGHEMTVKMLDDLKTLGFLYATKAGISIGIDDLVTPPSKKGLVDKADKDVIAVEQ
                     QYLDGVITNGERYNKVIAIWSEVTDKVAKEMFKAMDDREKASGELNPILVMSDSGARG
                     SAQQIRQLAGMRGLMARPSGEIIETPIQANFREGLNVLQYFISTHGARKGLADTALKT
                     ADSGYLTRRLVDVAQDVIISEDDCGTLRGIPASAIIEGGEEIESLRDRIVGRTALEEV
                     VDPIEGQPIVEANQEIDEDLSTEIQRSGVQRVRIRSVLTCESRRGCCIKCYGRNLATG
                     RPVEIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTARLEESSKHEARQDGTVKYLDLQT
                     VKSRKGERIAMNRNGSLIIIDDRGREAARYQIVYGAHILVEDGSRVTQDQLLATWDPF
                     TFAILTEVAGHIKFQDLKEGVTFDEEVDEVTGQSRMVVKDSPDEKKQPRFEIRSGSNK
                     VLKTYQMPVRANLMVTDGEEVEPGDIIAKIPRETTKTKDITGGLPRVVELFEARRPAE
                     TAVMSEIDGTVTLGAISKGKRKLIITGDDGEEREYDIPRGTHINVQDGDRVRAGEALM
                     DGPLNPHDILRVLGMSRLQEYLVNEIQEVYRLQGVNINDKHIEVIVRQMLRWVKIKEV
                     GDTEFLLEEQVDRFRFQDENERVRVDDGEVAQAEPLLLGITKASLSTDSFISAASFQE
                     TTRVLTEAAISGRVDYLRGLKENVIMGRLIPAGTGMEFYRNVDVERDETVDQAREREL
                     DEFPDIVGGHDIALPAR"
BASE COUNT          589 a          625 c          710 g          523 t
ORIGIN      
        1 ttcaggacga tgtccgtcgc gttatcaata cgaccgttgg tcgcgtgata tttaacgact
       61 cgattcctgc cggtcttcca ttcatcaacg gtacgttgaa gaaaaaaggt ctgcagtcgc
      121 tggtcaacta ctcgcatatc cgacttggcc atgagatgac cgtcaagatg cttgacgatc
      181 tcaagacact cggattcctg tatgcaacca aagccggtat ctcgatcggt atcgacgacc
      241 tcgtcactcc accttcgaag aagggtctgg ttgataaagc tgacaaggac gtgatcgcag
      301 tcgaacagca atacctcgac ggtgtgatca caaacggtga acgttacaac aaggtcatcg
      361 ccatctggtc tgaagtcact gacaaagtgg ccaaggaaat gttcaaggcg atggacgatc
      421 gcgaaaaggc atcaggggaa ttgaatccaa tcctggtgat gagcgattcc ggagctcgag
      481 gtagcgcaca acagattcgc cagttggctg gtatgcgcgg actgatggct cgcccctcgg
      541 gtgaaatcat cgagactccc attcaggcta acttccgcga aggcttgaac gtgttgcagt
      601 acttcatctc gacccacggt gctcgcaaag gtttggctga cactgcgttg aagacagctg
      661 actcgggtta cctgactcga cgtttagtcg acgttgctca ggacgtcatc atcagcgaag
      721 acgactgcgg cactctacgc ggtattcctg ccagcgccat cattgagggc ggcgaggaga
      781 tcgagtcact gcgtgaccgc attgtcggtc gcacggcgct cgaagaagtt gtcgacccaa
      841 tcgaaggtca accgatcgtc gaagccaatc aagagataga cgaagatttg tctaccgaaa
      901 ttcaacgctc aggtgtgcag cgcgttcgca tccgttcggt gctgacgtgc gaatcccgtc
      961 gtggttgctg catcaagtgt tacggccgca accttgccac tggtcgaccg gttgagatcg
     1021 gtgaagcggt tggcgttatt gctgcgcaat cgattggtga gccaggaacg cagttgacga
     1081 tgcgtacgtt ccacatcggt ggaacggcgc gccttgaaga gtcgtcgaaa cacgaggctc
     1141 gccaggacgg gacggtcaag tatctcgacc tgcaaacggt caagagccgc aagggcgagc
     1201 gcatcgccat gaaccgcaac ggttcattga taatcatcga cgaccgtggt cgtgaggctg
     1261 cgcgttacca gattgtctac ggtgcgcata ttctcgtcga agacggtagc cgtgtgactc
     1321 aggatcagct cttggcgaca tgggatccgt ttaccttcgc aattcttacc gaagttgcag
     1381 gtcacattaa gttccaggac ttgaaggaag gtgtgacgtt cgacgaggaa gtggacgaag
     1441 ttacgggtca gtcgcggatg gtcgtaaaag actcgcccga cgaaaagaaa cagccgcgtt
     1501 ttgaaatccg cagtggcagc aacaaggtac tgaagactta ccagatgcca gtacgcgcca
     1561 acttgatggt gaccgacggg gaagaagtag agccgggcga catcatcgcg aagatcccgc
     1621 gtgaaacaac caagacgaaa gacatcacgg gcggtttgcc gcgcgtcgtt gagcttttcg
     1681 aagcacgacg tccagcagaa accgcggtta tgtctgaaat cgatggaacg gtcactctcg
     1741 gtgctatctc gaagggtaaa cgcaagctga ttattactgg cgacgacggc gaagagcgcg
     1801 agtacgacat cccacgtggt acacacatca acgtgcagga tggcgatcgt gttcgagccg
     1861 gcgaagcctt gatggatgga cctttgaatc cgcacgacat cctgcgcgta ctcggtatga
     1921 gccgcttgca ggaatacctc gtgaacgaaa ttcaagaggt ctatcgtcta caaggtgtga
     1981 atatcaacga caagcacatt gaagtgattg ttcgtcagat gttgcgctgg gtaaagatca
     2041 aggaagttgg cgatacggag ttcctgctcg aggaacaggt cgatcgcttc cgcttccagg
     2101 acgagaacga acgtgtacgc gtggatgacg gcgaagttgc tcaagcggag ccgctcttgc
     2161 ttggtatcac gaaggcttct ctctcgaccg attcgtttat ctcggcagcc tcgttccagg
     2221 aaaccactcg cgtgttgact gaagcagcta tctcgggtcg cgtcgactat ctgcgcggct
     2281 tgaaggagaa cgtcatcatg ggtcggctga ttccagccgg tacaggcatg gagttctacc
     2341 gcaacgtcga cgtcgagcgt gatgagacag ttgatcaggc acgcgaacgt gagcttgacg
     2401 agtttccgga catcgttggt ggtcacgaca tcgcgctacc cgctcgc
//
LOCUS       DATCGC010000754         1240 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_80345, whole genome shotgun sequence.
ACCESSION   DATCGC010000754 DATCGC010000000
VERSION     DATCGC010000754.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1240)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1240)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1240
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80345"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            169..>1240
                     /locus_tag="VIJ87_07320"
     CDS             169..>1240
                     /locus_tag="VIJ87_07320"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY5444271.1"
                     /translation="MTFDAIIIGAGHNGLVTACYLAKAGIKTLVLERRDVVGGGAITE
                     EFHPGFRCSTLDHTAGPLSPQVVTDLNLAQHGLEFITPEVRVLSLTTDQRSLCIYNDT
                     ARTVAEIEKFSSKDAKSYPDFLTSFSRIGSVLAPILSMTPPSIDQPTASDAWQFGKVG
                     LAFRGLGKKDEYRLLRWGPMAVADLVAEWFDTEVLRATVAARGISGSFAGPWSAGTSL
                     GLLLQAALDSNPISPSCFVRGGLGGLTKALVAAAMSLGVEIRTKAEVVRVETGDGAEA
                     KVILSDGEELQTRAVVSNADPKTTFLRLVDPIDLDPNFLLKMRNYRAQGTSAKINLAL
                     DGLPAFSGADASKLNGRIYIGPE"
BASE COUNT          287 a          301 c          347 g          305 t
ORIGIN      
        1 atgcttcagc ttgtcgtgat gagcaagagg agtcggccac agataaacac gtatgaaact
       61 gataagaaga gaaagccttc tttttgatcc gactgatttc tgtttgtctg tcgccgactt
      121 tggtaagtca acgacaagac agacgcatat cggacataaa aatcggaaat gacttttgac
      181 gcaatcatta tcggtgctgg tcacaacgga ctcgtcaccg cctgttacct tgcgaaggcg
      241 gggataaaga ctcttgtcct cgaacgtcgt gacgttgtcg gtggcggagc gatcaccgaa
      301 gagtttcatc cgggatttcg ttgctcgaca cttgatcaca ctgctggtcc gctctcacct
      361 caagtagtta ctgacttgaa ccttgcgcaa catgggttgg agttcataac acccgaagtg
      421 cgagtcctga gtctgacaac tgaccaacga tcactgtgta tctacaacga caccgcacgt
      481 accgttgccg agatcgaaaa gttttccagt aaagatgcga agagttatcc cgactttctg
      541 actagcttct cccgaatcgg aagtgtgctt gcgccgattc tctcaatgac gcctccgtcg
      601 atcgatcagc caacggcgag tgacgcatgg cagtttggca aggtcggact cgcgtttcgt
      661 gggcttggaa agaaggacga gtatcgtttg ttgcgctggg gaccgatggc tgtggctgat
      721 ctggttgccg agtggtttga cacagaagtg ctacgagcga ccgttgctgc acgaggaatc
      781 tccggcagtt ttgctggtcc gtggtcagcc ggaacaagcc ttggtttgct tctccaggcg
      841 gcactcgatt cgaatcccat ttcaccttcc tgttttgtca ggggcggact gggtggtctc
      901 acgaaggccc tggttgcagc ggcgatgtct ttgggagttg agattaggac gaaggcagaa
      961 gtcgtacggg ttgagactgg ggatggcgcg gaagcaaaag tgatcctgag cgacggcgag
     1021 gaacttcaaa ctcgtgctgt tgtctctaac gcagatccca agacaacatt tctgcgcctc
     1081 gtcgacccaa ttgatcttga tccgaatttc cttttgaaga tgagaaacta tcgcgcacag
     1141 ggaaccagcg cgaagattaa tctggcgctt gacgggttgc ctgccttcag cggcgctgat
     1201 gcgagtaagc tcaacggacg aatttacatt ggtcctgaaa
//
LOCUS       DATCGC010000755         1235 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_178499, whole genome shotgun sequence.
ACCESSION   DATCGC010000755 DATCGC010000000
VERSION     DATCGC010000755.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1235)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1235)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1235
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_178499"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..676)
                     /locus_tag="VIJ87_07325"
     CDS             complement(<1..676)
                     /locus_tag="VIJ87_07325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444272.1"
                     /translation="MQNQLKAKLNSTFNWNTATFMAIFHVGAIAALFVFSWKWVAISI
                     VLNWIGGSLGIGIGFHRLMTHRGFQTPKPIEYLLTFCGLLALQGGAINWVVTHRIHHA
                     FTEKEGDPHSPRDGRWWAHMGWILTGTSQQHSDAVMRRYAPDLMKDPIHLWMNRLYFM
                     PLVLLGIALFAISGWQGLLWGVFFRVTFGLHATWLVNSATHLWGSRRFETTDDSTNSW
                     WVALLTF"
     gene            complement(928..>1235)
                     /locus_tag="VIJ87_07330"
     CDS             complement(928..>1235)
                     /locus_tag="VIJ87_07330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444273.1"
                     /translation="SRILLGAEFAVQETLLMRLVPDNLRGRVSTTDRASEMLVWSLST
                     AAAGWSLQAITPRSLTIISGLLSSTAGVAWLVLFGAQFVRLPKRLSGRVAPMSEQGL"
BASE COUNT          345 a          339 c          287 g          264 t
ORIGIN      
        1 caaacgtcaa cagcgcaacc caccagctat tggttgagtc gtcagtggtc tcaaaacgac
       61 ggctacccca aaggtgagtc gccgagttta ctagccacgt agcatgtagt ccgaatgtca
      121 cgcgaaagaa cacaccccac aaaagtccct gccatccact gattgcaaag agcgcaatcc
      181 ccagtagcac caagggcatg aagtagagac gattcatcca aaggtgaatc ggatccttca
      241 taaggtccgg ggcatatcta cgcatcacag cgtcagagtg ctgctgagag gtaccggtaa
      301 gaatccaacc catgtgtgcc caccaacgac catcacgtgg cgaatgcgga tcgccctctt
      361 tttcagtaaa cgcatgatga atgcgatgag ttacgaccca atttattgca ccgccttgaa
      421 gcgcaagcaa cccgcaaaac gtgagtaggt actcgattgg tttgggagtc tggaaaccgc
      481 gatgggtcat taaccgatga aagccaatgc caatccccaa actgcctcca atccaattca
      541 gtacgattga tatagctacc cacttccaac tgaaaacaaa aagcgccgca atcgcgccga
      601 cgtgaaaaat cgccatgaag gtggccgtgt tccaattgaa cgtactattt aatttcgcct
      661 tgagttgatt ctgcattacc gctccgaaag tattgatcta gcgttccaat gttcgcgccc
      721 cagaactgta ccaaagctct gacaaccgat gtgtaatagt tatgtcggaa ttaaataaac
      781 gcgaggtttt agcggtgagg aaacttcgca gttctggtta ctcaatgggc ctgtcactaa
      841 gacatcggta ccacaagcga atagcgtgtg gctctaacaa atgaccacct gacaaaggtc
      901 atatgaccat tgttctgtat tcttaagtta gagcccctgc tcgctcatcg gcgcaactcg
      961 gccgctcagt cgtttcggca gtctaacgaa ctgcgcccca aacagaacca gccaggcaac
     1021 accagcggta gacgaaagca gtccactaat aatcgtaagc gagcgcggag tgattgcttg
     1081 caacgaccat ccggcagctg ctgttgacag actccagacc aacatctcac ttgcccggtc
     1141 cgtagttgag acacgtccgc gcaggttatc cggtacgagt ctcatcagta aggtttcctg
     1201 gaccgcaaac tcagcgccca gcaatattcg tgaga
//
LOCUS       DATCGC010000756         1303 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_478456, whole genome shotgun sequence.
ACCESSION   DATCGC010000756 DATCGC010000000
VERSION     DATCGC010000756.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1303)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1303)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1303
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_478456"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..181
                     /locus_tag="VIJ87_07335"
     CDS             <1..181
                     /locus_tag="VIJ87_07335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444274.1"
                     /translation="DLSKEKLIQSLESLSNFATGLTQPVTYNSTRRLGVQGAYIFKVD
                     LKEKNFVPAGWFNVN"
     gene            185..1258
                     /gene="lpxD"
                     /locus_tag="VIJ87_07340"
     CDS             185..1258
                     /gene="lpxD"
                     /locus_tag="VIJ87_07340"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: protein motif:HMM:NF002060.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HEY5444275.1"
                     /translation="MTNSQKLSVNDLAEMVGGRVIGDGSQVVERIANLDTADESEIAY
                     VDSKKFFDAARNSKASCLIVPVDAGGEFKSSAVIEVANPKLAFSIVGAALNPAKSRDA
                     AIHPLASISPSADIDSLAYIGPYVAVGDYSHIGPATRVEAGVVIGDNVRVGSGCVIHP
                     NVVLYDGVSVGNNVILHAGVCIGADGFGYVRDRMGYHKFPQIGTVVIEDEVELGAHTC
                     VDRAALGRTRIGRGTKLDNMVHVGHNCDIGERVVIAAQTGISGSVVIEDDAVIGGQVG
                     FGDHTRVLSGAIIGSKAGILPGKIVRPGVWWGIPIQPLDEYKRLNAHLGRLPQMRGEL
                     KDLRQRVKELEERINKNQQDKSE"
BASE COUNT          331 a          289 c          375 g          308 t
ORIGIN      
        1 agacttgagc aaggaaaaat tgatccagtc actcgagtca ctatccaact ttgcaactgg
       61 tttgacccag ccagtaactt acaattcaac tcgacgtctc ggcgtccagg gcgcctacat
      121 attcaaggtc gacttaaagg aaaagaactt tgtccctgcg ggatggttca acgtcaacta
      181 gctcatgact aattcgcaaa aattgtcggt gaatgatctg gctgagatgg taggcggccg
      241 cgtgattggt gatggttcgc aggtcgtcga acgcatcgcc aatctcgaca ccgccgacga
      301 aagcgagatt gcctatgttg atagtaagaa gtttttcgat gcagctcgca acagcaaagc
      361 atcgtgcttg attgttccag tggatgccgg cggtgaattc aagagttcag cagtaattga
      421 agtggcgaat cctaaacttg cgttctcgat agttggagcg gcgcttaatc cggcgaagag
      481 tcgagacgct gcaatccatc cgttagcttc tatctctccg tcggcagata tcgactcttt
      541 agcttacatt gggccgtatg tcgcagttgg cgactattca catattggtc cagcgacaag
      601 agtagaagcg ggcgtcgtta taggcgacaa cgtccgcgta ggatcaggct gtgtcattca
      661 cccaaacgtt gtgctttatg acggtgtgtc tgttggcaat aacgtcattc tgcacgcggg
      721 ggtttgtatt ggcgcggatg gattcggata cgttcgagat cgaatgggtt accacaagtt
      781 tccacagatc gggaccgttg taattgaaga cgaggtcgaa ctcggcgcac atacttgcgt
      841 ggatcgagcg gcgcttggtc gtacgcgaat tggtcgcgga acaaagctcg acaacatggt
      901 gcacgtcggt cacaactgcg acatcggtga gcgagttgta atcgcagcgc aaacaggtat
      961 cagtggtagc gtggttattg aagatgacgc tgtgattgga ggccaggtcg gattcggtga
     1021 tcacacgcga gtcctgagtg gagcaattat tggttctaag gcgggaatac ttccgggcaa
     1081 gatcgttcgc cctggagttt ggtggggaat tccaattcaa ccgcttgatg aatacaagcg
     1141 tttaaatgct catctaggtc gcctgccaca gatgcgaggg gagttgaagg acttgcgaca
     1201 aagagttaaa gaactcgaag agaggatcaa caagaatcag caagacaaga gtgagtaaga
     1261 cagggcaacc cggtgcagta gcccgactgt caaggagggc tca
//
LOCUS       DATCGC010000757         2279 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_444631, whole genome shotgun sequence.
ACCESSION   DATCGC010000757 DATCGC010000000
VERSION     DATCGC010000757.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2279)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2279)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2279
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_444631"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2095
                     /locus_tag="VIJ87_07345"
     rRNA            <1..2095
                     /locus_tag="VIJ87_07345"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          646 a          468 c          636 g          529 t
ORIGIN      
        1 gacctgtggg taggggtgaa aggccaatca aactcggaaa tagctcgtac tccccgaaat
       61 gcatttaggt gcagcgcaag tcgtaaagtt atatagaggt agagctactg attggatgcg
      121 ggggcttcac cgcctaccaa ttcctgacaa actccgaatg ctatataatg tttctcaaca
      181 gtgagggcat gggtgctaag gtccatgtcc gagagggaaa gaacccagac catcagctaa
      241 ggtccccaaa tatatgctaa gttgaaagaa cgaggtttgt ctgcccagac agctaggatg
      301 ttggcttgga agcagccatt catttaaaga gtgcgtaaca gctcactagt cgagcggacg
      361 agcatggata ataatcgggc ataagcatat taccgaagct atggatttac aatttattgt
      421 aagtggtagg ggagcattct aacagggtag aaggtgtatc gtaaggtatg ctggactggt
      481 tagaaaagaa aatgtaggca taagtaacga taatgcgggc gagaaacccg cacaccgaaa
      541 gactaaggtt tccacagcta tgctaatcag ctgtgggtta gtcgggacct aaggcgaacc
      601 cgaaagggac agtcgatggc caacgggtta atattcccgt actacttatt actgtgatgg
      661 ggtgacggag tgatgaaagc gccgcgaact gacggaatag ttcgttgaag tacctaccta
      721 taagaaccgc aggcaaatcc acggtttttg gggaaatacg atagtactcg gagtcttcgg
      781 acaaagagat agtgcgccta agggcttcca agaaaaacct ctaaacttca ggtaatgagt
      841 acccgtaccg caaaccgaca caggtagtcg aggagagaat cctaaggtgc tcgagagatt
      901 catggctaag gaattaggca aaatagaccc gtaacttcgg gagaagggtc gccacgtagc
      961 aatacgtggc cgcagtgaag aggtccaggc gactgtttat caaaaacaca gggctctgca
     1021 aaatcgtaag atgaagtata gggcctgaca cctgcccggt gctggaaggt taagaggaga
     1081 tgttatcttc ggagaagcat tgaattgaag ccccagtaaa cggcggccgt aactataacg
     1141 gtcctaaggt agcgaaattc cttgtcgggt aagttccgac ctgcacgaat ggtgtaacga
     1201 tctggacact gtctcagcca tgagctcggt gaaattgtag taacggtgaa gatgccgttt
     1261 acccgcagtg ggacgaaaag accctgtgca cctttactat agcttagtat tgaccttgga
     1321 taaatgatgt gtaggatagg ttggagacta tgaagcggcg tcgccaggcg ttgtggagtc
     1381 attgttgaaa tacaaccctt tgtttatctg aggcctaacc ccgcgttgcg ggggacattg
     1441 cttggtgggt agtttgactg gggtggtcgc ctccaaaaga gtaacggagg cttctaaagg
     1501 ttccctcagt acgcttggta accgtgcgta gagtgcaatg gcataaggga gcttgactga
     1561 gagacataca ggtcgatcag gtacgaaagt agagcatagt gatccggtgg ttccgcatgg
     1621 aagggccatc gctcaaagga taaaaggtac gccggggata acaggctgat ctcccccaag
     1681 agctcatatc gacggggggg tttggcacct cgatgtcggc tcgtcacatc ctggggctgg
     1741 agaaggtccc aagggttggg ctgttcgccc attaaagtgg cacgcgagct gggttcagaa
     1801 cgtcgtgaga cagttcggtc tctatctact gtgggcgcaa gaaatttgag tggatctgat
     1861 tctagtacga gaggaccgaa ttggactaac ctctagtgta tctgttgtcc cgccaggggc
     1921 accgcagagt agctacgttg ggaagggata agcgctgaaa gcatataagc gcgaaaccca
     1981 ccacaagatg agatttcttt taagggtcgt ggaagatgac cacgttgata ggctatagat
     2041 gtaaaggcag taatgtcata gtcgagtagt actaataacc cgtaagctta tgtacacatt
     2101 ttcctcccga gcaatcggga ggaggaatct ttctaataaa atacttcttt atctcagtat
     2161 gttaagatat tcttacaatt acgaattcaa aattaggaat tacgaattgt aaatgttgcc
     2221 caaagcaaca taacgacctt aaggtggtta ttgcggcggg gctcacctct tcccatccc
//
LOCUS       DATCGC010000758         1294 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_210088, whole genome shotgun sequence.
ACCESSION   DATCGC010000758 DATCGC010000000
VERSION     DATCGC010000758.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1294)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1294)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1294
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210088"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..369)
                     /locus_tag="VIJ87_07350"
     CDS             complement(<1..369)
                     /locus_tag="VIJ87_07350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444276.1"
                     /translation="MSPETAILQDLLRRARRRRQLLVTLRGIAICLCVIAGVLLLTGW
                     MAHRFRTNSAAIIVLRLGALLTVLATIYFALIRPLLKHISDVRLARLIEERSPGTDDR
                     LVSAVEYSNADLRRNISPAIV"
     gene            complement(525..>1294)
                     /locus_tag="VIJ87_07355"
     CDS             complement(525..>1294)
                     /locus_tag="VIJ87_07355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444277.1"
                     /translation="MPATLTESVQTKAGETVAISDVKFDHPIFEVFQQSGRLAAAHVI
                     GYFRSQPAANASVLARFEDGSPALLESRAGKGRVLLFTSSLGPSWNDLPLMPLYLPFV
                     HQMVRYAGSREESSWYELGETFRVAKEQSAVPAVDTPTGTRLTENRLTPDGDVLVTGR
                     EPGFYRLRYSARPDFAAVDVDGAEGDFTKLDFGQFVAGVTGGAGNAESSEANRKLSNE
                     EVEGRQKVWWSLLFIALLLLLTESVLARRTRVVKMVG"
BASE COUNT          333 a          365 c          313 g          283 t
ORIGIN      
        1 gacgattgcc ggtgaaatat tgcgacgaag gtccgcgttt gaatactcaa ctgcggacac
       61 caggcgatca tccgttcccg gcgaacgttc ctcgatcaaa cgagcgagcc tgacgtcact
      121 gatatgtttg aggagcggac gaatgagagc gaaataaatt gtggcaagaa cagtgagcag
      181 ggcgccaagg cgcaggacaa tgattgcagc gctgttagtg cggaagcgat gagccatcca
      241 tcccgtcaac aacagaacgc cggcgatgac gcacaggcag atggcaatac ctcgcagcgt
      301 gaccagtagt tggcgtcgac gtcgagcacg acgtaggaga tcttgaagga tcgcggtttc
      361 agggctcatg acttactccc cggctaaaat cagttacagc gttgcgattc gatctggtac
      421 ttagtactta gatttttgta ctttgttcgt ttgtttcaag cacgtattca cgcggagact
      481 aagtacaaag cacaaagatc aaaataccag cttaggacat tctatcaacc aaccattttt
      541 acaactcttg tgcggcgcgc gagcaccgac tcagtcaaca aaagcaatag cgctataaac
      601 aaaagcgacc accaaacctt ttgtcgtccc tcgacttctt cgttgcttag cttgcgattc
      661 gcttcgctac tttccgcgtt gcccgcgccg ccagttacgc ctgcgacaaa ctgtccaaaa
      721 tccagtttcg tgaaatcgcc ctctgcacca tcaacatcaa ctgcagcaaa atccggacga
      781 gcactgtatc gcaatcgata aaacccgggt tcacgacccg tcaccaacac gtcaccgtca
      841 ggtgttaagc gattctcagt caatctcgtt ccagttggcg tatcaactgc gggtactgca
      901 ctctgctcct ttgccactct gaatgtttcc cccaactcgt accatgaact ttcttcgcgc
      961 gagcccgcgt aacgaaccat ctgatgaaca aatggtaagt agagcggcat caacggcaga
     1021 tcgttccaac ttggtccaag cgacgacgtg aacaaaagca cgcgaccctt ccccgcgcgc
     1081 gattcgagca gcgccggact cccatcctca aaacgcgcca acacactggc gttcgcagcc
     1141 ggttgagatc tgaaatagcc aatgacgtgc gctgcggcca gtcggccact ctgctggaaa
     1201 acttcgaaga taggatgatc aaacttaacg tcgctgatag ccacggtctc accggctttt
     1261 gtctgaactg attcagtgag tgtcgcgggc atga
//
LOCUS       DATCGC010000759         1181 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_144050, whole genome shotgun sequence.
ACCESSION   DATCGC010000759 DATCGC010000000
VERSION     DATCGC010000759.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1181)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1181)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1181
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144050"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1141
                     /locus_tag="VIJ87_07360"
     CDS             <1..1141
                     /locus_tag="VIJ87_07360"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY5444278.1"
                     /translation="VIRIDTTLVASDLLVLDRQGHAVKGLVATDFIITEDGKPEPVGH
                     FLLGSNTSVPRSIVLIIDYSGSQFPYIQNSVDAAKVLIDKLGPHDSMALITDDIEMLS
                     DFTTNKTELKKKLDILIERNRGKKGFMGFGKTNIRYGLSAQYSALMATLNEMFDHEDQ
                     RPIIVFQTDGDEAKYLRNSIITPHVPAGIPPEWSAAVQANIEAELKLQRDGMTEFSLE
                     DVYRTVEKSRATIYTVIPGTKFVGLSPEQQIDAMRQVDERAMKESLSNVSKEVREAFK
                     ARSAVQKAGTLTPVLRYRAEEIAKLQSALMEVSNLSGGWTEFLETPTQAQSIYSRIFA
                     DINERYIVGYYPKNKIGDGQRHKFNIEVKNHPEYTILGRKFYYTH"
BASE COUNT          337 a          322 c          277 g          245 t
ORIGIN      
        1 tgttattcgc atcgacacca ctctcgtcgc cagtgacctg cttgtactgg atcgacaggg
       61 ccacgcagtg aaaggtctgg tggccacaga cttcatcatc accgaagacg gcaagccaga
      121 acctgttggt cattttcttc ttggaagtaa taccagcgta ccgaggtcga tcgtgctcat
      181 catcgattac agtggtagcc agtttccgta cattcaaaac agcgtcgacg ccgcgaaggt
      241 cttaatcgat aaactcggtc cgcacgacag catggcctta atcaccgacg acattgaaat
      301 gctctccgac ttcacaacga acaagaccga actgaagaag aagctcgaca ttctgatcga
      361 acgcaaccgt ggcaagaaag gcttcatggg atttggaaaa acgaacattc gttacggcct
      421 cagcgctcag tacagcgcgt taatggcaac actcaatgaa atgtttgacc acgaggacca
      481 gcgtccaatc atcgtgtttc aaaccgacgg cgacgaagcg aaatacttgc gcaattcaat
      541 cattactccg cacgttccag caggcatccc ccctgaatgg tctgccgctg tccaggccaa
      601 cattgaagct gagctcaaac tccaacgcga cggtatgacg gagttcagcc tggaagacgt
      661 ctatcgcacg gtcgaaaaat cacgtgcgac gatctacacc gtaatacccg gtacgaagtt
      721 cgttggcctg tcgcctgaac aacaaatcga cgcgatgcga caggtcgacg aaagagcgat
      781 gaaggagtcg ctatctaacg tctcaaagga agtgcgtgag gcattcaaag ctcgaagcgc
      841 agtccagaag gcaggaaccc tgacgcccgt cctccgatat cgggctgaag aaatcgccaa
      901 acttcaatct gccttaatgg aggtgtcgaa tctgtctgga ggctggactg agtttctgga
      961 aacacccacg caggcccaat cgatctactc acgaatattt gccgacatca acgaacgcta
     1021 catagtcggt tactacccaa agaacaaaat tggagacggt caacgccaca agttcaacat
     1081 cgaagttaaa aaccaccctg aatacacgat tctcggcagg aagttttatt acacccatta
     1141 agtagctata atccgattcg ccccctcgaa ttgggagttc a
//
LOCUS       DATCGC010000760         1250 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_376482, whole genome shotgun sequence.
ACCESSION   DATCGC010000760 DATCGC010000000
VERSION     DATCGC010000760.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1250
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_376482"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1250)
                     /locus_tag="VIJ87_07365"
     CDS             complement(<1..>1250)
                     /locus_tag="VIJ87_07365"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY5444279.1"
                     /translation="PKSPQFIETAHRRGYRFIARINAPPQLPIAEKHADALVSSASTA
                     RLVKAYPAVVGRDDTLLRLEGWLQQSLQGERQIVFLTGEAGIGKTALVDAFVGGLSSE
                     TNIRVARGQCLEQYGTGEAYLPVLDAIGRLCREEPQVTHLIRPHAPMWLLQMPSLVSS
                     ADRELLTREVAGATHERMLREMSEALDALTAETPLILILEDLHWSDHSTLNLISYLAN
                     QRQTAHLMLIGTHRNVELTVGRHALKAVKQELLAKQLCFELPIEYLSENAVAKYLAFR
                     FPSHRFPAGLARLIHKRTDGNPLFMVNAVDYLLAEKVIVEAEGQMELVDELTNVEVGV
                     PDNIKQMIEMQVDHLDGKMQRLIETASVAGVEFSPLALLAGLEEEQSVIERRCEELAR
                     DGQFIRDCGIQELPNGEVVARYGF"
BASE COUNT          290 a          344 c          296 g          320 t
ORIGIN      
        1 gaaaccgtat ctcgccacaa cttcaccgtt tggcagttcc tgaatgccac aatcccgaat
       61 aaattgaccg tcccgagcca gctcttcaca tcgtctttcg atgacgcttt gctcttcttc
      121 caaacctgcg agtaaagcga gcggggaaaa ctccactccg gccacgcttg ctgtctcaat
      181 cagccgttgc atttttccat ccagatgatc cacttgcatt tcgatcatct gtttgatgtt
      241 gtcaggcaca ccaacttcta catttgtaag ctcatctacc agctccatct ggccttcagc
      301 ttcaacgatc accttctctg caagtagata gtcgacggca ttgaccatga agagtggatt
      361 gccatctgtg cgtttgtgga tcaaccgggc gagccctgca ggaaaacgat gactgggaaa
      421 tctgaatgcc aagtatttcg ctacagcgtt ttcactcaag tactcgattg gtaactcgaa
      481 acaaagttgt ttcgccaaca actcctgttt cactgccttg agcgcatgtc gaccgacggt
      541 tagctcaacg tttctatggg ttccgatgag cattagatga gctgtttggc gttggtttgc
      601 aaggtaagag atcagattga gggtggaatg atcgctccaa tggagatctt caagaatcag
      661 gatcaacggc gtttcagccg tcagagcgtc tagcgcttcg ctcatctcgc gcaacattct
      721 ttcgtgagtc gcaccagcca cttctcttgt caacagttcg cgatccgccg aactcaccaa
      781 cgaaggcatc tgcaacaacc acattggcgc atgtgggcga atgaggtgcg tcacttgagg
      841 ttcttcgcgg cacaacctcc caatcgcatc aagtacgggc aaataagctt cacccgttcc
      901 atactgttca agacattgac ctcgagctac tcgaatgttt gtttcagagg aaagtccgcc
      961 aacgaatgcg tcgaccagcg ccgtctttcc aatccctgct tcaccggtta ggaatacgat
     1021 ctgacgctcg ccttgcagtg actgttgaag ccaaccttcc agacgcaaca aggtgtcatc
     1081 tcggcccaca actgccgggt atgctttcac gagtctcgca gtactcgctg acgaaacgag
     1141 ggcatcagca tgcttttctg cgatgggtaa ttgcggcggt gcgttgatgc gcgctatgaa
     1201 gcggtagcct cggcgatgcg cagtttcaat aaactgtggc gactttggat
//
LOCUS       DATCGC010000761         1228 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_343260, whole genome shotgun sequence.
ACCESSION   DATCGC010000761 DATCGC010000000
VERSION     DATCGC010000761.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1228)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1228)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1228
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_343260"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..934
                     /locus_tag="VIJ87_07370"
     CDS             <1..934
                     /locus_tag="VIJ87_07370"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEY5444280.1"
                     /translation="VVLYSVKKDRVADAIAAIDDYSKRQPQNPDDQFRMEFLITDAFL
                     RAKNFSAMATHAEKMLAAAKTFSSSHKKEVSKRDDMLLKSTLLLADAYDKSNRKELAI
                     STWEDLRRVSMALPSGSLYKQATFRLASLSPAADLKKLSEDLAKATFEALPDIVGTQW
                     IDQEPKKLSDLRGQVVLLDFWAPWCGPCRFTFPKLTLWHQAYKDKGLVILGLTKYFGH
                     DDERALTPGEELLYLRNFKKQNRLPYGFVVADNDANNLNYGVFSIPMSFLIDRRGVVR
                     FISAGANPDEIAELGKMIKKLIEEPAEAKTESGH"
     gene            1041..>1228
                     /locus_tag="VIJ87_07375"
     CDS             1041..>1228
                     /locus_tag="VIJ87_07375"
                     /inference="COORDINATES: protein motif:HMM:NF014713.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcdA"
                     /protein_id="HEY5444281.1"
                     /translation="MDFVRILIAFIAGIASFLSPCVLPLVPGYISLISGVSVDGLKEG
                     TSSRRAVIINSLAFNAGLS"
BASE COUNT          310 a          285 c          317 g          316 t
ORIGIN      
        1 cgtagtcttg tactcggtca aaaaagacag ggtcgctgac gcgatcgcgg caattgacga
       61 ctactcaaaa cgtcagccgc agaatccaga tgaccaattc agaatggagt tcctgatcac
      121 cgacgcattc ctgcgagcga aaaacttttc agcaatggcc acgcacgccg agaaaatgct
      181 ggctgctgcc aagacgtttt caagctcaca taaaaaggaa gtatcgaaac gcgacgacat
      241 gttgcttaag tcgactcttc tgctggcaga tgcctacgac aaaagtaatc gaaaggaatt
      301 ggctatttcg acgtgggaag atcttcgccg cgtgtcgatg gcgttgcctt cgggaagctt
      361 gtacaagcag gcaacgttcc gtttggccag cttgtctcca gcagctgatt tgaaaaaact
      421 gtcagaggat cttgcaaagg ctactttcga agcactaccc gacattgtcg gtacacagtg
      481 gatcgatcag gaaccaaaga agctctctga tttacgtggt caagtggtgt tgctggactt
      541 ctgggctcca tggtgcggtc cgtgtcgctt tacttttccc aagctgacgc tctggcacca
      601 ggcttacaaa gacaagggtt tggtaattct aggattgacg aagtattttg gacacgacga
      661 cgagcgggca ttgactccgg gtgaagagct tctgtacctg cgcaatttca agaaacaaaa
      721 tcgactgcca tatggttttg tcgttgctga taatgacgca aacaatttga attatggagt
      781 cttttcgatt ccgatgtcgt ttttgatcga tcgtcgtggc gtggtgcgct tcatttcagc
      841 cggcgcgaat ccagatgaaa ttgcagagtt gggtaagatg attaagaagt tgatagaaga
      901 accggcggaa gcaaagacgg aaagtgggca ctgaatgtcc gatatgcgtc tgtcttgtcg
      961 tttacagagc ttcggacgtc cttgtgggag tcatcgacaa gctaaagctt atcggacaat
     1021 cggacatctg aaataacctt atggacttcg ttcgcattct tatcgcattc atcgcaggca
     1081 tcgcctcgtt cctgtctcca tgtgtgttac cactggttcc cgggtacatc tcgctaatct
     1141 ctggcgtcag tgttgatggc ttgaaagaag gaaccagcag tcgacgtgcg gtaatcatta
     1201 attcactcgc tttcaacgcc ggactctc
//
LOCUS       DATCGC010000762         1829 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_244392, whole genome shotgun sequence.
ACCESSION   DATCGC010000762 DATCGC010000000
VERSION     DATCGC010000762.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1829)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1829)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1829
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244392"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..620
                     /locus_tag="VIJ87_07380"
     CDS             <1..620
                     /locus_tag="VIJ87_07380"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY5444282.1"
                     /translation="AIVAFVETLQTGALDDRESSQRFLSIISKNASRMHVLIDDILEL
                     TAIEGGNVQLKLAEVELSDLAGEVSAALSGKATAQKVKIVNEVPKNVTVYADARRLEQ
                     MLTNLVDNGIKFGREGGSVTIRYQTNERDQISVEDNGDGIPAQHLERLFERFYRVDRA
                     RSRDMGGTGLGLAIVKHLALLHGGEVTVTSELGKGTTFKIHLPKA"
     gene            789..1067
                     /locus_tag="VIJ87_07385"
     CDS             789..1067
                     /locus_tag="VIJ87_07385"
                     /inference="COORDINATES: protein motif:HMM:NF012911.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HEY5444283.1"
                     /translation="MNTVARKFLIRGEVQGVGYRFFAQRAAARHQVVGYVKNCDDGTV
                     EAFVEGSANNVEAFKHDLATGPQWAVVEQMEEISFEPTGRYSAFRIER"
     gene            1178..1699
                     /locus_tag="VIJ87_07390"
     CDS             1178..1699
                     /locus_tag="VIJ87_07390"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: protein motif:HMM:NF002636.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003999 - adenine
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HEY5444284.1"
                     /translation="MDHLKKLIREVPDFPKPGINFYDITTLLKHPEGLRNTVDALAAE
                     FDGQKVDSVIGVEARGFIFAPALAYHLGAGFVPVRKPKKLPAECASISYDLEYGQDTL
                     QIHRDAVGDGHRVIIADDLLATGGTARAVVDLVEQLGGTVVGLVFVVELEFLPGREKL
                     AGYDVRSLIKYQE"
BASE COUNT          461 a          431 c          494 g          443 t
ORIGIN      
        1 cggctattgt ggcgtttgtt gagacattac aaaccggagc cttagatgat cgtgagagca
       61 gtcaacggtt cctttcgatc atcagcaaaa acgcttctcg aatgcacgta ttgattgacg
      121 atattcttga gttaaccgcg atcgagggcg ggaatgtgca gttgaaactt gccgaggttg
      181 aattgtcgga ccttgcaggt gaggtgagcg cggctttgtc cggaaaggcg actgcccaga
      241 aagtaaagat cgttaacgag gttccaaaaa acgtaactgt ttatgcggat gctcgtcgac
      301 tggagcagat gctgacgaac ctggtcgaca atggaataaa gtttggacgt gaagggggat
      361 ctgtcactat caggtatcaa acaaacgaac gggatcagat atcggtagaa gacaacggtg
      421 acgggattcc agcccagcat ctcgagcgtc tcttcgaacg tttctatcgt gttgaccgcg
      481 cgcgatcacg cgacatgggc ggcaccgggt tgggcctcgc tatcgtaaag cacttggcac
      541 tcctacacgg tggtgaagtg acggtaacgt ccgagttggg caagggaaca acgtttaaga
      601 ttcatcttcc aaaagcgtaa gcctcacaaa agacgcctcc ttgagtgcgg tggcctggca
      661 ccgctctggt aaagcaaacg ttcactttgc gaaagcggtg ccgggccacc gcattccaag
      721 gaggcgtgct tggttttggg cccgttaggt ttcttgccga acctttggca aaatgccacg
      781 cgtcgacgat gaacaccgtt gcgcgaaaat tcttgatacg tggagaggtg cagggcgttg
      841 ggtatcgttt ctttgctcaa cgtgccgctg cacgccacca ggttgttggt tacgtaaaga
      901 actgcgatga cggaactgtc gaagcatttg tcgagggctc ggcaaacaat gtcgaagcgt
      961 tcaagcatga tttagccact ggcccacaat gggcggtcgt tgagcagatg gaagaaatca
     1021 gtttcgagcc gactggaagg tattccgcct tcaggattga aaggtaggtc tttggtcttg
     1081 ggtctttggc ctttgttcag gatctactta agctctaaac atctaagacc aaaaacctaa
     1141 gaccaaagac ctaagtcaaa taacatctca aatcaaaatg gatcacctga aaaaactaat
     1201 tcgcgaagtc ccagacttcc caaaacccgg aatcaatttc tacgacatca ccacacttct
     1261 caagcacccc gagggcttgc gcaacacagt tgacgctctc gcagcagaat ttgacggtca
     1321 gaaagttgat tcggtgattg gtgtcgaagc gcgtggcttt atctttgccc cagcgttggc
     1381 ctatcacctt ggcgccggtt ttgttccggt gcgtaaacct aagaagttgc cggctgaatg
     1441 tgcgtccatt tcatatgacc ttgagtacgg tcaggacact ttgcagattc acagagacgc
     1501 agtcggcgac ggccatcgag tgatcattgc cgacgacttg ttagcaactg gcggcactgc
     1561 tcgcgcggta gtcgatctcg ttgaacaact tggtggtaca gtcgtcgggt tggtgtttgt
     1621 agttgaactc gagttcctac caggccggga aaagttggca gggtatgacg ttagatcact
     1681 gatcaaatat caggagtaaa aaacgatctt tgggcttagg ccttggttgt gtccttgtaa
     1741 agacctaagg ccaaagaccc aagaccaaag gcccaagacc attgctgcct ttacgattaa
     1801 ccattcacga tttacgattc acttctctt
//
LOCUS       DATCGC010000763         1165 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_478562, whole genome shotgun sequence.
ACCESSION   DATCGC010000763 DATCGC010000000
VERSION     DATCGC010000763.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1165)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1165)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1165
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_478562"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1165)
                     /locus_tag="VIJ87_07395"
     CDS             complement(<1..>1165)
                     /locus_tag="VIJ87_07395"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY5444285.1"
                     /translation="VLPSKSASPERVIRFQREARAASSLNHPNIITIYDFGVANGRDY
                     IVSEFVEGRTLRSFIGAPDLTLNKILDLVIQVASALEAAHTAGIVHRDIKPENIMVRP
                     DGYVKVLDFGLAKLSEEHEKSGEQSFDAEGEEAFSHGTVKDTSFNSNFETRTGALIGT
                     FRYMSPEQARGQEVDPRSDLFSLGIILYELVTGERPFKGETGHHAMVAIKDVEPAPIY
                     TEVGEAPNELQWIITRALAKKRENRYQTARDLLNDLEALKDRLSDESRVQMIPANTET
                     PPNFSQVSTANLLEKGPRIDLSTQASSGVAPKERRSYTHWYQLVVGFVIVVLATVASY
                     HYGQTSRLTRPVFTNRDTILLADFANETGETVFDNTLKQGLATQLSQSPYLNL"
BASE COUNT          267 a          310 c          293 g          295 t
ORIGIN      
        1 aaaagattga gatatggaga ctgagacagt tgcgtcgcca gaccttgctt gagggtgttg
       61 tcaaagactg tctccccggt ttcgtttgca aagtcagcga gtagaattgt gtctctgtta
      121 gtaaatacgg gacgggtcaa tcgagatgtc tgcccgtagt ggtaggaagc aacagtcgcc
      181 agcacaacga tcacaaaccc aaccacaagt tgataccaat gcgtgtagga gcgtctctcc
      241 ttgggcgcca caccgctgga cgcctgggtt gaaagatcga ttcgcggccc tttttccaag
      301 aggtttgccg tactcacctg actaaagttt ggcggcgtct cagtgtttgc cggtatcatt
      361 tgcactcgag actcgtctga caatctgtcc ttcagtgctt caagatcatt caataaatcg
      421 cgcgcagttt gataacgatt ctcacgtttc ttagccaatg ccctcgtaat gatccactgc
      481 aactcattcg gggcttcacc gacctctgtg tagatcgggg cgggctcaac gtctttgatc
      541 gccaccatcg cgtggtgccc ggtttcccct ttgaacgggc gctcgccagt tacgagttca
      601 taaaggatga taccgaggct aaaaagatcg cttcgtggat caacctcctg gccgcgcgcc
      661 tgttcgggcg acatgtacct aaacgtgcct attagagctc ccgtgcgtgt ctcgaagttt
      721 gaattgaacg aagtgtcctt tacagtgccg tggctgaagg cctcctcgcc ttctgcgtca
      781 aagctttgtt ctccactctt ctcgtgctcc tcgctaagtt tggctaaacc gaagtcgagc
      841 acttttacgt aaccatccgg ccggaccatg atattttccg gcttgatgtc acggtggacg
      901 atgcctgcgg tgtgggcagc ttcgagggca cttgctacct gaataaccaa atccagaatc
      961 ttgttgagcg tcagatccgg agccccaatg aaactgcgca acgtacgacc ttcaacaaat
     1021 tcagacacga tgtagtcgcg accattcgcc acaccaaaat cgtaaatcgt tatgatgttt
     1081 ggatgattga gtgaactggc tgcgcgcgct tcacgttgga aacgaatcac acgttccgga
     1141 ctagcagact tcgaaggcaa aacct
//
LOCUS       DATCGC010000764         1470 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_244397, whole genome shotgun sequence.
ACCESSION   DATCGC010000764 DATCGC010000000
VERSION     DATCGC010000764.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1470)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1470)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1470
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244397"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1470
                     /locus_tag="VIJ87_07400"
     rRNA            <1..>1470
                     /locus_tag="VIJ87_07400"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          399 a          330 c          462 g          279 t
ORIGIN      
        1 gagcgaacgc ggaagagccc aaaccgattg tcttcggaca gtcggggttg tggggcccgc
       61 tcatatggag tgacaaacca actacctagt cgaagagtcc ggaacggctc accaaagaag
      121 gtgacagtcc tgtaggcgaa agacaaacgg ctccgagtgg gtacccgagt accacgggac
      181 acgtggaacc ctgtgggaat ctggggggac catcctccaa ggctaaagac tactctgtga
      241 ccgatagtga actagtaccg tgagggaaag gtgaaaagaa cccctgttag gggagtgaaa
      301 tagtacctga aaccgtcaat ctacaagcag tggaagcact atgtctcgta agggaaatgt
      361 gcaaccgcgt gccttttgca taatgagccg gctagttact ctcaggggca aggcgaagca
      421 atttgcagag ccgtagcgaa agcgagtctg aatagggcga gtgagtcgct gggagtacac
      481 gcgaagcggg atgatctagg catggccagg atgaaacctg ggtaacacca ggtggaggtc
      541 cgaaccagtg ttggttgaaa acagcttgga tgagctgtgc ctaggggtga aaggccaatc
      601 aaattccgtt atagctcgtt ctctccgaaa tatctttagg gatagcgtcg cgtcgaccat
      661 gatggtggta gagcgctgga tggactaggg gccttaccgg gttactgaat ccaaccaaac
      721 ttcgaatgcc atcaatgtaa tgcgcggcag tcagacggcg ggggataagc ttcgtcgtcg
      781 agaggggaac aacccagacc gccagctaag gtccccaaat tcacgctaag tggaaaagga
      841 tgtggagacg cacagacagc caggaggttg gcttagaagc agccatcctt taaagaaagc
      901 gtaatagctc actggtcaag tggctccgtg ccgacaatgt aacggggctc aagcgtgata
      961 ccgaagctgc ggatcagtcg gttctttgga actgactggt ggtaggagag cattctcaac
     1021 cggagtgaag gtcgatcgaa agaacggctg gaccgttgag aagagactct gccggcacaa
     1081 gtagcgataa agtgtgtgag aatcacactc gccgtaagtc taaggtttcc tgaggaaggt
     1141 tcgtccgctc agggtcagtc ggtccctaag gcgaggccga aaggcgtagt cgatgggaaa
     1201 caggtcaaca ttcctgtacc ggaccgtgct gcgatggggt gacgcaggag gataggtggg
     1261 cccacgaacg gaagtgtggg tttaagcctg tagcgtgcct ggataggtaa atccgtccgg
     1321 gtatacgtga gaggtgacgc cgagagcttt tagctcataa agtcagtgat tccaagctgc
     1381 caagaaaaac ctctaagctt cagacacggg atgaccgtac cgcaaaccga cacaggtaga
     1441 cgggaagagt attccaaggc gcgtgagtga
//
LOCUS       DATCGC010000765         1771 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_444692, whole genome shotgun sequence.
ACCESSION   DATCGC010000765 DATCGC010000000
VERSION     DATCGC010000765.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1771)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1771)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1771
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_444692"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(313..>1771)
                     /locus_tag="VIJ87_07405"
     CDS             complement(313..>1771)
                     /locus_tag="VIJ87_07405"
                     /inference="COORDINATES: protein motif:HMM:NF012784.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000028 - ribosomal small subunit assembly
                     [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HEY5444286.1"
                     /translation="AYRQNWNKIASVFQGDGLIKGKVKSVVKGGLMVNIGVEAFLPAS
                     QIDIVPPKDLQQFVGNTYDFKIVKINDDRRNVVLSRREIIEQERSEKRLKFLESVNVG
                     NRVTGTVKNLTDFGAFIDLDGMDGLLHITDMTWGRLGHPSEMVKVGQQLEVVVLDINK
                     EKERVSLGLKQTQRNPWDQIEERFPAGQRVKGKITNLVPYGAFVELEEGVEGLIHVSE
                     LSWTKRIMRPSDILSVGQEVEAVVLGVNKEEQKISLGLRQLEPNPWDEIEKKFEIGSR
                     VKGQIRNMTAYGAFVELADGIDGMIHVSDLSWTRKINHPSEVFKKNDEVEAVVIDIDK
                     VNQRISLGIKQLSEDPWKNIDQKYKIGDLVKGKVTKLASFGAFVQLQDDIDGLVHISQ
                     LSEDHVAKVKDVLKVGQEVEARVIKVDKVERRIGLSIKAANYSEEELRKESEAFDTLR
                     PGEDMVGLEKAFAAAEQEDYRPGEGKKPKDDSKGN"
BASE COUNT          397 a          501 c          387 g          486 t
ORIGIN      
        1 atattagctt tgcaaatttt gggtggaaaa agcggcccgt gaaactctac cgcctaaaat
       61 ttagaaaatc tcatcaccaa tactgttcaa ttcgcgtccg ttcaacttgg cactcttagc
      121 gtcgattgtc tgagaaagga acggcccggc gcgatgcact cgcggaaact ctcgacagaa
      181 tcaactgagc aaactatgca accagcttcc gaaacagtag cgaactcaag tgaattcagc
      241 cgccttcgct aagaactcgt cagacgctaa tgtcggacac gacgttttag cgattcaacg
      301 agtaaggatc ctctaattgc ctttggaatc gtctttgggt ttcttccctt caccggggcg
      361 atagtcttcc tgctcggcgg cagcaaaggc cttctccaag ccgaccatgt cttcgcctgg
      421 gcgcagcgta tcgaacgctt cggattcttt gcgcaattct tcttcggagt agtttgccgc
      481 cttaatggac agaccaatgc ggcgctctac tttgtccacc ttgatcacgc gagcttctac
      541 ttcctgcccg accttgagca cgtctttgac tttggcgaca tgatcttcgc tcagctggga
      601 aatatgaacg agtccatcga tatcgtcctg taattgaacg aacgcaccga agctcgccag
      661 ctttgttacc ttgcctttaa ccaaatcacc gatcttatat ttttgatcaa tattcttcca
      721 cggatcttca ctgagttgct tgatcccgag gctgatccgc tgattgacct tgtcgatgtc
      781 aatcaccacc gcttctactt cgtcgttctt tttaaatact tcgctgggat ggttgatctt
      841 tcgagtccag cttagatcgg agacgtgaat cataccgtca atgccgtcgg ctagttccac
      901 gaaagccccg taagcggtca tgttgcgaat ctggccttta acccggctgc cgatctcgaa
      961 cttcttctca atctcatccc atggattggg ttcaagttgc cgcaaaccga gcgaaatttt
     1021 ctgttcctcc ttgtttacgc ccaggacaac ggcttcaact tcctgaccca cacttaaaat
     1081 atccgatggc cgcatgatcc gtttcgtcca ggaaagttcc gagacgtgga tcaacccttc
     1141 tacgccttcc tccaattcca cgaaggcgcc ataaggaaca aggttcgtaa tcttgccttt
     1201 gaccctctgg cccgctggga aacgttcttc gatctggtcc cacggattcc tttgcgtctg
     1261 cttgagtccg agcgagacac gttccttttc cttgttaata tcgagaacga ctacttcgag
     1321 ctgctgacct actttgacca tctcgctggg atgaccgaga cggccccagg tcatgtcggt
     1381 gatgtgaagt aatccatcca tcccatcgag atcgatgaaa gcgccgaaat cggtcaggtt
     1441 ctttaccgtc ccggtcacgc gattgccgac attcacgctt tcgagaaact ttagccgctt
     1501 ctcgctccgt tcctgttcaa ttatttcgcg ccggcttaaa acgacattgc gacggtcatc
     1561 attaatctta acgattttga aatcgtaggt gttgccgaca aactgctgca aatctttcgg
     1621 cggaacaata tcgatctgtg atgccggcaa aaatgcttcc accccgatat tcaccatcag
     1681 cccgcctttg accacggact taactttgcc tttgatcagg ccgtcgccct gaaaaacgct
     1741 ggcaatcttg ttccagttct ggcggtaggc t
//
LOCUS       DATCGC010000766         2554 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_444719, whole genome shotgun sequence.
ACCESSION   DATCGC010000766 DATCGC010000000
VERSION     DATCGC010000766.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2554)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2554)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2554
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_444719"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1479
                     /locus_tag="VIJ87_07410"
     CDS             <1..1479
                     /locus_tag="VIJ87_07410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444287.1"
                     /translation="RMASVFLSVALVAILAGLSISLWQAAVARRQWERAERRSTEVRR
                     LTNTLLKELQSEVGVLPGSDKARKRLSQISIDYLNGLAAETNDPAVLKQLSEAYVQLG
                     KQYGYESGDPDQIHGHILRGLEISRRLVAAAPGDVDAKKLLATNLAEYDFFCEKEPAE
                     KLKLNLERAQLWEQILATNPSDGESYSELASAYGTLNYLYRLYEQTDEASKYGRLEIQ
                     IREREANLLEKPNGTNHERDLLSGDYLSLGSAYAEELKDVSTAERFYDRALSVAQALI
                     AEHPDYRLGWIRFAAANRQIGELQYREANYRSALDHFQTGLGAIRDATAKLTDAQMRG
                     AEPSYMLHVAESLYRTGQVEQARKMLRDAGEVNAQIIGFGGTETTNAVTNARFLGLSA
                     EVYEVFGETEKALAAYAEAEALWKKVVEAQPQQQTEASLQIARLCLGRADLYAGLRVR
                     TGEARSEYERVVDILSKLKASNQISLGGLNELNQAKQKLQTL"
     gene            complement(1496..>2554)
                     /locus_tag="VIJ87_07415"
     CDS             complement(1496..>2554)
                     /locus_tag="VIJ87_07415"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY5444288.1"
                     /translation="QTAEAIREAMSKVKGAKDLAVEQSAGEEHLEISLDRDKLARYGL
                     NIADVLEVAKIAIGGDEATDVLEGQRRFAIFVRLKENYRNQIEKLNDILVNAPVGGQV
                     PLGQLATFRLSSGDSVVSRENALRRIVVKCNVAGRDIGSFVKDSQAAVAAQVKTPPGY
                     FITWGGQFENAQQATRRLLIAIPISLLLVFVLIYTCFNSLRNTLTIIFNIPIALVGST
                     TFLLISGFPLSVPAIVGFIAVFGIAVQNGLVMVSYINKLRDRGMELREAVITGASVRL
                     RAELLSALIGSISLVPFIISSGTGAEIEKPLAIVVVGGLVTRPLKIIILPMVYEWVES
                     RAARRAETKTEAVVQAEG"
BASE COUNT          665 a          638 c          670 g          581 t
ORIGIN      
        1 cggatggcgt ccgtgttttt atcggttgct ctggtcgcga tcttggctgg tctatcaata
       61 tcgttgtggc aagccgcagt cgcccgccga caatgggaac gagccgagcg acgctccact
      121 gaagtaagac gcctgaccaa cacgctgctg aaagagttgc aaagtgaagt tggtgttttg
      181 cccggttcag acaaggctcg caaaaggctt tcgcaaatct caatcgacta tctgaacggc
      241 ctggctgcgg agacgaatga tcccgcagtt ttgaagcagt tgtcagaggc ttatgtccaa
      301 cttggcaaac agtacgggta cgagagtggt gatcccgatc agattcacgg ccacattctt
      361 cgagggctgg agatatcacg tcgtcttgtt gctgcagcac ccggcgatgt tgatgcgaaa
      421 aaactgctcg ctacgaacct ggcggagtac gacttctttt gtgaaaagga accggcagaa
      481 aaactgaagc taaaccttga gcgagcgcaa ctgtgggaac aaattctcgc gactaatccc
      541 agcgacggcg aatcgtattc agaactcgct agtgcttacg ggacgcttaa ttatctatac
      601 cgattgtatg aacagaccga cgaggcctcg aagtacggtc gtctggaaat tcagatccgc
      661 gagagagagg caaatcttct tgagaagcct aacggcacta accatgagcg cgacttgttg
      721 tccggcgact acctaagttt aggttctgca tatgctgaag aattgaaaga cgtgtcaacc
      781 gccgaacggt tttacgaccg tgctttgagc gttgctcaag cattgatagc agaacatcct
      841 gactaccgtc tcgggtggat tcgttttgct gcagccaacc gccaaattgg cgagcttcaa
      901 tatcgagagg ctaactatcg atcggctttg gatcatttcc aaaccgggtt aggagcgatt
      961 agggacgcaa ctgcgaaatt gacagatgcg cagatgagag gtgccgaacc gagttacatg
     1021 ttgcatgttg cagaaagttt gtatcgcact ggtcaagttg aacaggcgag gaaaatgttg
     1081 cgtgacgcgg gtgaagtcaa cgcgcagatc attggttttg gtggaacgga aactacaaac
     1141 gccgtaacca acgcgcgctt tctaggcttg agcgccgaag tttatgaagt tttcggagag
     1201 acagaaaagg cattggcagc gtatgcagaa gctgaagcac tatggaaaaa agttgtcgaa
     1261 gctcagccac aacaacaaac tgaggcgagt ctgcagatcg ccagactttg cctcggcaga
     1321 gcggatctct acgcgggatt aagagtgcgc accggagaag cgcgcagtga atatgaacgt
     1381 gtggtcgata ttctttcaaa actgaaagcg tcgaaccaga tctccctggg aggattgaac
     1441 gagctcaacc aggctaagca gaaattacaa acactgtgag attatttgat cgttttcaac
     1501 cttctgcttg cacgacagct tccgtctttg tttcagcccg gcgagcggca cgactctcca
     1561 cccattcgta aaccatcggc agaatgatga tcttgagcgg acgcgtcacc aacccgccaa
     1621 ccacgacaat cgcaagaggc ttttcgatct cagcgcctgt gccggatgaa atgataaaag
     1681 gtaccaggct gatactaccg atcagtgcac ttaacaactc ggcgcgcagg cgaacactgg
     1741 cgccggtaat cacagcttcg cgcagttcca tacctctatc gcgaagttta ttaatgtaag
     1801 aaaccatcac cagtccattt tgtacggcaa taccgaagac cgctatgaaa ccgacaatag
     1861 cgggaacgct gaggggaaat cctgaaatca gaaggaaggt cgtactaccc accaacgcga
     1921 tcggaatgtt gaagatgatc gtgagtgtgt tacgcagaga attgaagcat gtatagatta
     1981 ggacaaacac gagaagcaac gagatcggta tggcgataag aagccgtcgt gtggcctgtt
     2041 gtgcattctc gaattgtccg ccccaggtga tgaaatatcc gggtggggtt ttaacctggg
     2101 ccgcaaccgc agcctgcgaa tccttaacaa aacttccgat gtctcttccg gcgacattgc
     2161 atttcaccac gatgcgccgc aaagcgttct cgcgactgac gaccgagtca ccactggaaa
     2221 gtcgaaacgt agctaactgt cccagcggca cctgtccacc aactggtgca ttcacgagaa
     2281 tgtcattgag cttttcaatc tggttgcgat agttttcttt caaacggacg aagatcgcaa
     2341 agcggcgctg accttcaagc acgtcggtcg cttcatcccc gccgatggca atcttggcta
     2401 cttcaagtac gtcagcgata tttagtccgt agcgcgccaa cttgtcgcga tcaagagaaa
     2461 tctctaggtg ttcctcgccc gccgactgtt ccactgccag gtctttcgct cctttaacct
     2521 tcgacatcgc ttcgcgaatt gcttcagctg tttg
//
LOCUS       DATCGC010000767         1271 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_144248, whole genome shotgun sequence.
ACCESSION   DATCGC010000767 DATCGC010000000
VERSION     DATCGC010000767.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1271)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1271)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1271
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144248"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1271
                     /locus_tag="VIJ87_07420"
     CDS             <1..>1271
                     /locus_tag="VIJ87_07420"
                     /inference="COORDINATES: protein motif:HMM:NF012731.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HEY5444289.1"
                     /translation="VIQLRARAGIDRIGRGTQERDAIVITEIPFQVNKARLIERIAEL
                     VNEKKLDGISDLRDESDRTGMRIVVELKRDSVPQVVLNKLYKLTPMQSSFGVINLAIV
                     NGQPRVLNLKQMLEYFIDFRREVVKRRTEYELRKAKARAHILEGLTKAIDALDAIVLL
                     IRNSRSVDEARQWLMGQLSTMSEVKEWKGIPSDVQLKPHLSKLQKTMERLAFSELQAQ
                     AILDLQLRRLSALERQRITDEYENIIKLIAELEEILGNERSLRAVIRKELEEVKKDFG
                     DERRTEIVDEGVELSIEDLIADEEVAITVTNSGYIKRTPVTTYSRQGRGGKGRFGAAA
                     KGADFVEHLFIATTHAYLMIFTDDGMVYKIKVHEVPDAAASARGKAVVNLINIPSDRK
                     LAGVVPVKEFAEGRYVVMVSRKGVIKKTSLA"
BASE COUNT          330 a          305 c          352 g          284 t
ORIGIN      
        1 tgttattcag ttacgcgctc gcgctggaat cgatcgcatt ggtcgtggca cccaggagcg
       61 cgatgcgatc gtaattacag aaattccatt ccaggtaaac aaagcacgcc tgatcgaacg
      121 catagctgaa cttgtcaacg agaagaagct cgatggtatc tcagacctgc gtgacgagtc
      181 ggatcgtact ggtatgcgaa tcgtggttga gttgaagcgc gactcagttc cccaggtggt
      241 gctgaacaaa ctctacaagc tcacgccaat gcaatcgtca tttggggtta tcaacctggc
      301 gatcgtaaat ggtcagccgc gggtactcaa tctcaagcaa atgctcgaat actttatcga
      361 ctttcgccgt gaggttgtga agcgccgcac tgaatacgag ttgagaaagg cgaaagcgcg
      421 cgcgcatatt ctcgaaggcc tgaccaaggc catcgatgca ctcgatgcga tcgttttgtt
      481 aatccgaaac tcgcgttcgg ttgacgaagc aagacaatgg ctgatgggcc agttaagcac
      541 gatgagcgag gtcaaagaat ggaagggcat tccgtccgac gttcaactca agccgcatct
      601 cagcaagctc caaaaaacta tggagcgtct cgctttctcc gagttgcagg cccaggcgat
      661 cctcgatctc cagctgcgca gactgtctgc tctcgagcgt cagaggatca ctgacgagta
      721 cgagaacatc atcaagctca tcgccgagct ggaagagatc cttggaaacg agagatctct
      781 tcgtgcggtt attagaaaag aactcgagga agttaagaaa gatttcggcg acgaacggcg
      841 caccgagatt gtcgacgaag gagtcgagct ctcgatcgag gacttgatcg cagatgaaga
      901 agtcgcgatt acagtaacca acagtggtta catcaagcga acgccggtaa ccacttattc
      961 acgtcaggga cgtggcggaa aaggccgatt cggggctgcg gcgaagggtg cggatttcgt
     1021 cgaacacctg ttcatcgcta ccactcatgc ttatctaatg atctttactg acgacggcat
     1081 ggtctacaag atcaaggttc atgaagttcc ggacgctgca gcatcggctc gcggaaaggc
     1141 ggtagtgaac cttatcaaca taccttcaga tcgaaagctt gctggtgttg ttccggtaaa
     1201 ggagtttgct gaaggtcggt atgttgtgat ggtttctcgc aagggcgtca tcaagaagac
     1261 atcattggct g
//
LOCUS       DATCGC010000768         1512 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_478674, whole genome shotgun sequence.
ACCESSION   DATCGC010000768 DATCGC010000000
VERSION     DATCGC010000768.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1512
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_478674"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            247..450
                     /locus_tag="VIJ87_07425"
     CDS             247..450
                     /locus_tag="VIJ87_07425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444290.1"
                     /translation="MAISNELSSEIAAAILAHQNSPQDLLKLKEVLLEIHSALQEMSE
                     HSHTSRMRAASIDSSTPSDKRSH"
     gene            462..1055
                     /locus_tag="VIJ87_07430"
     CDS             462..1055
                     /locus_tag="VIJ87_07430"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY5444291.1"
                     /translation="MSQAVQTHIQTQLADICTQLERNSFQVSELVKNLLHYQLNLRLE
                     SDRWSIAECVAHLNLFSEAFLPIISEACEQTRESGWVVDAPFKMDVIGRLLKYALEPP
                     SKWKAVTTAAFEPLVVEPLEQVAPGFYELQSDLICVLRSAANLNLNRIRIVSPLSNHV
                     RYNLYSCFLIIAAHQRRHIWQAEQTRVALLESELKRR"
     gene            complement(1058..>1512)
                     /locus_tag="VIJ87_07435"
     CDS             complement(1058..>1512)
                     /locus_tag="VIJ87_07435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444292.1"
                     /translation="VPGRWLSDNDTRLPAFVVLIDFTDFRQILGDEKARAAFDVGWGF
                     LHELDHVVTDSIDSDEQGSLGECENHINAMRRELGLPLRADYFFTESSLKTDPNFGTK
                     LVRLPFELYNPRTTRKQRYWLIWDAASVGGLVAKHQTAAVRSAPDRRN"
BASE COUNT          401 a          360 c          374 g          377 t
ORIGIN      
        1 atgttggatt cagactttgt ttcttcaagg cgcaacgata tgcgcgatca gttaaagggc
       61 tgtgaattgc gccttaaatg tttgttaagg agaacaaggc aggttggacg actctatttg
      121 gagcgctcaa aacttctcgg cgggctgata attaacattg aattaacatc aacgtaacac
      181 cttcaaacta cgatggcccc tcttcaaaat cagcctcggc aattcggttc agagactcca
      241 ggaatcatgg caatttctaa tgaactcagc agtgagatcg ctgccgccat tctggcgcac
      301 cagaattccc cgcaagactt attgaaactt aaagaggtgc tactcgagat tcattctgcg
      361 cttcaggaaa tgtcggaaca ctcgcataca agtcgcatgc gagccgcttc gatagactcg
      421 agtactccat cggataaacg ttcccactga tacctaccaa cgtgagtcag gcagtacaga
      481 cacacatcca gacccagctc gctgatattt gtacccagct cgaaagaaac tcgtttcaag
      541 ttagtgagct ggtcaaaaac ttacttcact atcaactgaa tctgagactc gaatcggatc
      601 gttggtcgat cgccgagtgt gtggcccatc tgaatctctt ctcggaggca ttcttgccaa
      661 tcattagtga ggcatgtgag cagacacgtg aaagtgggtg ggtagttgat gctccgttca
      721 agatggatgt tattggaagg ttattgaagt atgcgctcga gccaccgtca aagtggaagg
      781 cggtcacaac agcggcgttt gagcccttgg tggtggaacc gttggaacag gtcgcacccg
      841 gattttacga attgcagtcg gatttaattt gcgtgctacg gtcggcagcg aatctcaatt
      901 tgaacaggat tcgaatcgta tcgccgctct ccaatcatgt tcgttacaac ttgtattcgt
      961 gctttctaat catagcggca catcagcgac gacacatctg gcaggcagag caaacgcgtg
     1021 ttgctctact ggaaagcgaa ttaaagcggc gttgagttta gtttcgacga tcaggtgcgg
     1081 agcgcactgc agcagtctga tgctttgcga ctaagccacc aactgatgcc gcgtcccata
     1141 tcagccaata acgttgcttg cgagtagttc gtgggttgta gagttcgaaa ggaagccgga
     1201 cgagtttggt tccgaagttc ggatcggttt ttaatgaaga ctcagtaaag aaatagtctg
     1261 ctcgcagcgg taaaccaagc tcccggcgca tcgcatttat gtggttttca cattcgccaa
     1321 gcgagccttg ctcatcggag tctatagaat cggtgacgac atgatcgagc tcatgcaaaa
     1381 aaccccaccc aacatcaaac gcagctctgg ctttttcatc acccaggatt tgtcggaaat
     1441 cagtaaagtc gatcaagaca acaaaggcgg gcagtcttgt atcgttgtct gacaaccatc
     1501 gaccaggaac aa
//
LOCUS       DATCGC010000769         1530 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_210260, whole genome shotgun sequence.
ACCESSION   DATCGC010000769 DATCGC010000000
VERSION     DATCGC010000769.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1530
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210260"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1229
                     /locus_tag="VIJ87_07440"
     CDS             <1..1229
                     /locus_tag="VIJ87_07440"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEY5444293.1"
                     /translation="IVDPKGYILTNYHVIDEASRIIVGLQSGEKYRATVKGVDPDTDV
                     AVLKIDAPHDLPTVTLGDSNAAQVGDWVLAMGSPFGLDQTVTAGIISKKERESQYFTA
                     FQRFLQTDAAINRGNSGGPLVNMRGEVIGMNSQIATSTGDYNGIGFALPANETNFVYK
                     QLVAQGKVKRGFLGITLDSVHEEFAKVYGMSDAKGAIVTSVTALDNGLQTPAGKAGIQ
                     ANDIIIEFEGAQVANAQDLIQRVASTPVGQTTTLVYLRDIDGKLEKKTASVVLSERPP
                     SGLRDWVEPTKPTVKENDPKGNALHLGITLAELTPQLIAEKHLTNIKGLFVKEIDPNG
                     LVAEVRVPPTNNPALIEGDVINRINRVPVNTLAEFQRVVSGLKAGDPIVLNVTSIRRD
                     AKGDRPQPVIVQFTYQ"
     gene            1334..>1530
                     /locus_tag="VIJ87_07445"
     CDS             1334..>1530
                     /locus_tag="VIJ87_07445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444294.1"
                     /translation="MAQAKKAIAKTSGKRNQRSSVRTAVKTYQNYINGEWVASESGEL
                     FENFNPADNRDIVGRFPLSTS"
BASE COUNT          425 a          387 c          388 g          330 t
ORIGIN      
        1 tcatagtcga tcccaaaggc tacattctga cgaattatca cgtaatcgac gaggcatcac
       61 ggatcatcgt tggacttcag tcgggcgaaa agtatcgggc gactgttaag ggcgtcgatc
      121 ccgataccga tgtcgctgtg ctcaagattg atgctccaca cgatctgccg accgtgacgc
      181 ttggcgattc gaatgctgca caagtaggcg attgggtcct ggcaatgggt tctccatttg
      241 gactcgacca aactgtgact gccgggatca tttccaagaa agagcgagag agtcagtact
      301 tcaccgcctt ccagcgcttt ctacaaactg atgccgcaat caatcgtggc aatagcggcg
      361 gcccactcgt gaacatgcgc ggcgaagtaa tcggaatgaa ttcccaaatc gctacctcta
      421 ccggggacta caacggtatc ggtttcgcat tgccggcaaa cgaaacgaat ttcgtctata
      481 aacagctcgt tgcacagggc aaagtaaaac gtggcttcct gggaatcact ctcgattcag
      541 tgcacgaaga gtttgccaag gtctacggca tgagtgatgc caagggtgcg atcgttactt
      601 cggtaaccgc gttggacaat ggccttcaga cacctgctgg gaaagcgggt atccaggcta
      661 acgacatcat catcgaattt gagggtgcac aagttgccaa tgcgcaggac ttgattcaaa
      721 gagtggccag cacaccagtc ggtcagacaa caacgctcgt ctatttgcga gacatcgatg
      781 ggaaactgga aaagaagact gcgagtgtcg tgttgagcga acgtccacca tcaggactta
      841 gagattgggt tgagccgacc aaaccaacgg tcaaagaaaa tgacccgaaa ggtaacgctc
      901 tacatttggg aatcacactc gctgagctta cgccccaatt gatcgccgaa aaacatttga
      961 ccaacatcaa agggctgttt gtgaaagaga ttgatcctaa cggcctcgtt gccgaagttc
     1021 gggtgccgcc gacaaataat cccgctctta ttgaaggcga tgtcatcaat cgtatcaata
     1081 gagttcccgt aaacacgctg gcggagtttc agcgcgttgt gagcggcctg aaagccggcg
     1141 atccgattgt gctcaacgtc accagtattc ggcgagacgc caaaggtgat cgaccgcaac
     1201 ctgtgatcgt gcagttcacc tatcaataac caaataagga atgtccgata tgctttagct
     1261 tgtcgctgaa gctcagaagt agtttcttcc ggacaaagac gacaagacag acgcatatcg
     1321 gacatccaaa cttatggctc aggctaaaaa agcaattgct aaaacaagcg gtaaacgaaa
     1381 tcagcgaagc tctgtacgca ccgcagtaaa gacctaccag aactacatca acggcgaatg
     1441 ggtcgcgagc gagtccgggg agttatttga aaacttcaac cctgctgata accgcgacat
     1501 tgtcggtcga tttccacttt caaccagcca
//
LOCUS       DATCGC010000770         1098 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_144322, whole genome shotgun sequence.
ACCESSION   DATCGC010000770 DATCGC010000000
VERSION     DATCGC010000770.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1098
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144322"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..259
                     /locus_tag="VIJ87_07450"
     CDS             <1..259
                     /locus_tag="VIJ87_07450"
                     /inference="COORDINATES: protein motif:HMM:NF013731.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HEY5444295.1"
                     /translation="STLLLDKILGQEIVDAQSPVYLQFGEEIVLQVNELTETEQVLVR
                     TLGSRGGRWFGVAGAAEMSDGKVALLLDLPALVARYRSETL"
     gene            complement(256..>1098)
                     /locus_tag="VIJ87_07455"
     CDS             complement(256..>1098)
                     /locus_tag="VIJ87_07455"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEY5444296.1"
                     /translation="ETLGSIISPSSTCGCAGLRPTYGRVSRYGAMGLSWTMDKIGPIC
                     RGVEDCAAALSAIYGPDGKDITVGDAPFNWNPDTNISGLRIGYLKTEFEGTGLQPNVG
                     QQQQQRRELYKTAIDVLEKAGAKLVPIEMPKFSTNALRFILQAEAAAAFDDITRDGRV
                     TQLSGQNPGDWPNAFRTSRFIPAVEYLRAQRARTMLIHEMEKLMSQWDVFVSPAPGSS
                     SLLVTNLTGNPAVCVPCGFVNDRPLAIMFTGGVYDEVSPLRVALAFERATNWHTMHPK
                     MDWS"
BASE COUNT          256 a          301 c          286 g          255 t
ORIGIN      
        1 ctcgacgttg ttgctcgaca aaattttggg ccaggaaatc gtcgacgcgc agtcgcctgt
       61 ctatttgcag tttggagaag agatcgtcct acaggtaaat gagctgactg aaactgaaca
      121 agtgttagtg cgaacccttg gtagtcgtgg tggccgctgg tttggagtgg ccggcgccgc
      181 cgaaatgagt gatggaaaag ttgcgctctt actcgacctt cctgccttag tcgctcgcta
      241 cagatccgaa accctttagg accaatccat cttggggtgc atggtgtgcc agttcgttgc
      301 tcgttcgaac gccaatgcca ctcgcaatgg cgacacctcg tcgtaaacac cgccagtgaa
      361 cataatcgcc agcggtctat cgttcacaaa tccgcacggt acacagacgg caggatttcc
      421 agtgaggttc gtaaccagca aactcgaact ccccggcgcg ggactaacaa agacatccca
      481 ctgcgacatt agtttctcca tctcgtggat cagcattgtg cgagcacgtt gtgcgcgcaa
      541 gtactccact gcgggaatga aacgggatgt gcggaatgca ttgggccagt ccccggggtt
      601 ctgacctgac aactgggtaa cgcgaccgtc acgagtgatg tcgtcaaaag cagcagcagc
      661 ttcggcttgg agtatgaaac gaagcgcatt cgtcgagaac ttcggcattt caatcgggac
      721 caatttcgcg ccagcctttt ccagcacgtc tatggcagtc ttgtaaagtt cacgtcgttg
      781 ttgctgttgt tgaccgacgt ttggctgtaa gccggttcct tcaaactcgg tcttcaagta
      841 accgattctc aacccgctga tgttggtatc tggattccag ttgaaaggtg catcgccaac
      901 agtgatgtcc ttcccatcag gaccgtagat cgcgctcaat gccgcagcac agtcctcaac
      961 gccacgacaa ataggtccta tcttatccat cgtccaactc aaacccatcg ccccgtagcg
     1021 acttacgcgg ccgtaagttg gacgaagacc tgcgcaaccg cacgtcgatg aaggagaaat
     1081 gatcgagcca agtgtttc
//
LOCUS       DATCGC010000771         2441 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_343394, whole genome shotgun sequence.
ACCESSION   DATCGC010000771 DATCGC010000000
VERSION     DATCGC010000771.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2441)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2441)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2441
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_343394"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1959)
                     /locus_tag="VIJ87_07460"
     rRNA            complement(<1..1959)
                     /locus_tag="VIJ87_07460"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            complement(2236..2311)
                     /locus_tag="VIJ87_07465"
     tRNA            complement(2236..2311)
                     /locus_tag="VIJ87_07465"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2276..2278),aa:Ala,seq:tgc)
     gene            complement(2318..2394)
                     /locus_tag="VIJ87_07470"
     tRNA            complement(2318..2394)
                     /locus_tag="VIJ87_07470"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2358..2360),aa:Ile,seq:gat)
BASE COUNT          516 a          742 c          539 g          644 t
ORIGIN      
        1 ggtcggaact tacccgacaa ggaatttcgc taccttagga ccgttatagt tacggccgcc
       61 gtttaccggg gcttcgatca agagcttgca ccccatcact taaccttccg gcaccgggca
      121 ggcgtcacac cctatacgtc cacttgacgt gtttgcagag tgctgtgttt ttattaaaca
      181 gtcgcagcca cctatttttt gcaaccgcat tgggctcccc ttgtacaggt tcacctacta
      241 gcggcacacc ttcttccgaa gttacggtgt caatttgccg agttccttca cccgagttct
      301 ctcaagcgcc ttagaatttt catcctgccc acctgtgtcg gtttgcggta cggtttcgcc
      361 ttgactgaag cttagaggat tttcctggaa gcatggtatc tgcaacttcg cgccacaagg
      421 gcactcgtcg tcacgccttg gtgttaacga ccccccggat ttacctagag gatccaccta
      481 cacgcttgaa ccgggacatc caacacccgg cttgcataac cttctccgtc tccccatcgc
      541 atcaaaacga ggtatcggaa tattgaccga ttttccatcg actacgcctt tcggccttgc
      601 cttaggagcc gactcaccct gcgccgatga acgtggcgca ggaaaccttg ggctttcggc
      661 gagcgggcct ttcacccgct ttatcgctac tcatgtcagc attcgcactt ctgatacctc
      721 cagcaaccct tacaggtcac cttcgcaggc ctacagaacg ctctcctacc atgcaatata
      781 tcccggagga catacgcatc cgcatcttcg gtgcacagtt tgagccccgt tacatcttcc
      841 gcgcaggacg actcgaccag tgagctatta cgctttcttt aaagggtggc tgcttctaag
      901 ccaacctcct ggctgtttat gccttcccac ttcgtttgcc acttaactgt gtctctggga
      961 ccttagacgg cggtctgggt tctttccctc ttgacatcgg acgttagcac ccggtgtctg
     1021 tctcccgtga aactactctt cggtattcgg agtttgcaat gatttggtag acctatacgg
     1081 ccccctagtc ataacagtgc tctacccccg aaggtatatc acgaggcgct acctaaatag
     1141 ctttcggaga gaaccagcta tctccaagtt tgattagcct ttcaccccta cccacagctc
     1201 atcccctacc ttttcaacgg tagtgggttc ggacctccag caggagttac cctaccttca
     1261 tcctggccat gggtagatca cttggtttcg ggtctacacc cagcgactga acgccctatt
     1321 aagactcgct ttcgctgcgc tttccctaaa aaggttaagc ttgccactga atgtaagtcg
     1381 ctgacccatt atacaaaagg tacgcggtca ccccttgcga ggctcccact gtttgtatgc
     1441 atgcggtttc aggatctatt tcactcccct cccggggttc ttttcgcctt tccctcacgg
     1501 tactggttca ctatcggtcg atcacgagta tttagccttg gaggatggtc cccccatgtt
     1561 cagacaggat ttcacgtgtc ccgccctact tgtcgcaacc ctagttccac cacctgtctt
     1621 tcgcatacgg ggctatcacc cgctatggcc ggactttcca gaccgttccg ctagacaaat
     1681 ggctaaaagt tgcaggctga tccgatttcg ctcgccacta ctttcggaat ctcggttgat
     1741 ttctgttcct ctgcctactt agatgtttca gttcagcagg ttcgctctac ccggtctatg
     1801 tattcaaccg ggagtgaccc ttgcgggccg ggtttcccca ttcggacatc tgcggatcaa
     1861 agcttgtttg ccagctcccc gcagcttaac gcaagctact acgtccttca tcgcctgtga
     1921 tcgccaaggc atccaccaca tgcacttgtt cgcttgaccc tataaccttg aatcctcgag
     1981 tgacttcgaa gccaatagtc ataaggcata taacgcgctt gtgacgcacc cgaccctttt
     2041 gtttgtcgaa tgcgtcgata caatcaaacc caagtattcc agcttcagac ttcgaaactg
     2101 aaatgccttt acttcttcca ttttgttaaa gatcaagata cagcactggt caaaaaacca
     2161 gaaccaagcg ctcaaacgtt agcgcttggt tctgcattct cgacagatca ttcacggttt
     2221 gacgaacaca ccagttggtg gaggtgaacg ggatcgaacc gatgacctcc tgcttgcaaa
     2281 gcaggcgctc tcccaactga gctacacccc cgataaatgg tgggtctgga tgggttcgaa
     2341 ccatcgaccc ccgccttatc aagacggtgc tctaaccagc tgagctacag accccgtgtc
     2401 aggatccagg attgtggaac gagggaccga gggttcagaa c
//
LOCUS       DATCGC010000772         1610 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_178695, whole genome shotgun sequence.
ACCESSION   DATCGC010000772 DATCGC010000000
VERSION     DATCGC010000772.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1610)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1610)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1610
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_178695"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            106..189
                     /locus_tag="VIJ87_07475"
     tRNA            106..189
                     /locus_tag="VIJ87_07475"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:138..140,aa:Ser,seq:gct)
     gene            283..359
                     /locus_tag="VIJ87_07480"
     tRNA            283..359
                     /locus_tag="VIJ87_07480"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:317..319,aa:Arg,seq:gcg)
     gene            451..528
                     /locus_tag="VIJ87_07485"
     tRNA            451..528
                     /locus_tag="VIJ87_07485"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:486..488,aa:Leu,seq:tag)
     gene            607..684
                     /locus_tag="VIJ87_07490"
     tRNA            607..684
                     /locus_tag="VIJ87_07490"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:642..644,aa:Leu,seq:caa)
     gene            781..857
                     /locus_tag="VIJ87_07495"
     tRNA            781..857
                     /locus_tag="VIJ87_07495"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:815..817,aa:Leu,seq:taa)
     gene            complement(861..>1610)
                     /locus_tag="VIJ87_07500"
     CDS             complement(861..>1610)
                     /locus_tag="VIJ87_07500"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HEY5444297.1"
                     /translation="NGNWFIYIGLPGKNVQSFHPSPAPRGTIQFPSEIEKLYQQFLDL
                     NMEAVKAHAIEDRTKGYALSTYPSLRTNQLAVREYATRNLLLIRKVLSESADAEQRRA
                     AAHFLGYTNYSRVQIELLVKASRDQDETVRNNAVRALGVLAESNPAIAQQIPARDFIF
                     MLNSGNWSDRNKGCYLLSTLTIPRDPKVLQLIRKLASDSLVEMAHWRDYNHAHTSRVL
                     LGRIAGIEEKKLQQLAHDDGDAIILAFKSAR"
BASE COUNT          385 a          415 c          428 g          382 t
ORIGIN      
        1 aatccgggta cccctgccaa aagacagaag gcaggaggca gaagcagtag gcagacgctc
       61 cgtgagttca gaattcctgc ttcctcctgc tcctgcccct gactcggagg cgtcgcctaa
      121 tggtatggca gcggtttgct aaatcgccgc gcttgtcgcg tgcaggttca actcctgtcg
      181 cctccgccaa aagacaggag gcaggaagca gaagcagtat gcagacgctc cgcgagttca
      241 gaattcctgc ttcctgctac tgcctactgc ctcctgattc tcgggcctgt agctcaatgg
      301 aacagagcgc gactgtgcga aggtcgaggt tgcacgttca aatcgtgcct ggcccaccaa
      361 agaaacagac ggggagaagg agtgactggg tgagttggag aaagttcacc ccgtcgccca
      421 ctctcaccat cgccccgtca cttccttttc tccggcgtag cccaaatggc atgaggcact
      481 agtcttagaa actagttagt gagggttcga atccctccgc cggaaccagg atcagtaggc
      541 aggcggcagg ggcagtaggc aggagcccga gactcgcgcc caggtggaaa cttcatcctt
      601 gcttttgctc gcgtagtcca aatggcagga gacgtcagat tcaaaatctg aacagtgtgg
      661 gttcgaatcc ctccgcgagt accaatgtcc gatatgcttc tgtcttgttg tgatgaatgc
      721 tagcgaatct ctaatccgag tcacgacaag acataagcat atcggacatt cataatcctt
      781 gcgcgtgtag cccaactggg agaggcgact gacttaagat cagttaagtg ggagttcgaa
      841 tctcttcacg cgcaccagtc tcaacgagcc gacttgaacg cgaggataat tgcatcgcca
      901 tcgtcatggg ccagttgctg aagtttcttt tcttcaatac cggctattcg gcccaacagg
      961 acacgggaag tatgcgcgtg attgtaatcg cgccagtgcg ccatttcgac gagtgagtcg
     1021 gaagcaagtt tacgaataag ctgaagtacc tttggatcac gtggaatggt tagtgtactg
     1081 agcaaataac agcctttgtt ccgatccgac cagtttcccg aattcaacat gaatatgaaa
     1141 tcccgcgcag gtatctgctg agcaatggct ggattcgact cggccaacac accgagtgct
     1201 ctaaccgcat tatttcgcac agtctcatcc tggtcgcgac tcgctttcac cagcaattca
     1261 atctgcacgc gactgtagtt tgtgtatccg agaaagtgtg cagcagctcg gcgctgttcc
     1321 gcgtcagcag attcactcaa cactttacga atgagcaaca ggtttcgagt ggcatattcg
     1381 cgtacagcca actggttggt ccgaagcgat ggataggtcg agagagcata acctttggtt
     1441 cggtcctcga tggcgtgtgc tttaacagcc tccatattca ggtcgagaaa ttgttgataa
     1501 agcttttcga tctctgatgg aaattgaatc gtgcctcttg gtgcgggact gggatgaaac
     1561 gattggacat tttttccagg taggccgatg tagatgaacc aatttccatt
//
LOCUS       DATCGC010000773         1162 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_376633, whole genome shotgun sequence.
ACCESSION   DATCGC010000773 DATCGC010000000
VERSION     DATCGC010000773.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1162)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1162)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_376633"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..288
                     /locus_tag="VIJ87_07505"
     CDS             <1..288
                     /locus_tag="VIJ87_07505"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: protein motif:HMM:NF014560.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050797 - thymidylate synthase (FAD)
                     activity [Evidence IEA];
                     GO_process: GO:0006231 - dTMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HEY5444298.1"
                     /translation="QKELSEHSQQGFDLYLEAIDRGIAKEQARLFVPPNLYVEFYFSC
                     NARSLMNFLSLRNDTHAMFEIRKYAIALEYLWGEVMPDTKKAFVEHGRIAP"
     gene            392..>1162
                     /locus_tag="VIJ87_07510"
     CDS             392..>1162
                     /locus_tag="VIJ87_07510"
                     /inference="COORDINATES: protein motif:HMM:NF024554.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HEY5444299.1"
                     /translation="MPQNHTHGDSTGKLAINRAKGLYNCWVCGGGTVVQLVSAVRSLS
                     AQDSLKYLSQFVDSSTKESTDEFTTRVARLLAKETESPRRVSPPVFNPNVLKDWQTPH
                     EWFDSRHIRDGVRQSFQAGFDPVARRYSPEHGTYEGPGIILPHFWGGSLVGWQTRWLD
                     GKPKWLPKYTNTTDFPRETTLWGYDSAATSEHAPVVVESVPTALYLISEGHPAIATFG
                     AQITEAQLRHLRQFQQGVILAPDNDSAGRKWLDTTIKYL"
BASE COUNT          311 a          289 c          290 g          272 t
ORIGIN      
        1 cagaaggaac tatcagagca ttcgcaacag gggttcgacc tctacctaga agcaatcgac
       61 cggggaattg ccaaagagca ggcccgtctg ttcgtgcctc caaatctcta cgtagaattt
      121 tatttctcct gcaatgcccg cagcctcatg aacttcctat ccctgcgtaa tgatactcac
      181 gctatgtttg agatacgtaa gtatgctatt gctctagagt atctatgggg tgaggtaatg
      241 ccagacacta agaaggcatt cgtagaacat ggtcgcatcg caccttaaat gggatgacat
      301 ataccctcgt atagattggg agaaactata cgatgaactt ggatgggagc caatctacac
      361 ccgaggggac gaagataagg ggtactgtct catgccccaa aaccataccc acggagactc
      421 cacgggaaaa ctggctatca atcgagcgaa aggactctac aattgttggg tatgtggtgg
      481 aggcactgtg gtacagcttg tcagtgctgt acgttctcta tctgctcaag atagtttgaa
      541 gtacctttca cagtttgttg attcaagcac taaagagtca acagatgaat tcacgactcg
      601 cgtcgcaaga ctattggcga aggaaacgga atcaccacgc cgcgtgtcgc cgccggtatt
      661 caaccctaac gtactcaaag actggcaaac gccccatgag tggtttgatt cccgacatat
      721 tcgtgatgga gtacgtcaaa gtttccaagc ggggtttgac cctgtggcta gacggtactc
      781 cccggaacac ggaacatacg aaggtccggg aatcatactt ccccattttt ggggtggctc
      841 attggttgga tggcaaacta gatggttgga cggtaagccc aagtggctcc ctaagtacac
      901 gaacactact gattttccac gcgagacaac tttatgggga tacgatagtg cagcaacatc
      961 tgaacatgcg ccggttgttg tggagtccgt cccaacagcc ctctacctaa tctccgaggg
     1021 tcacccggca attgcgacgt tcggagcgca gatcacagag gcccaactgc gccatttgag
     1081 acaatttcaa cagggcgtaa ttctcgcccc ggacaacgac tctgctggta gaaagtggct
     1141 cgatacgacc attaaatact tg
//
LOCUS       DATCGC010000774         1221 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_343430, whole genome shotgun sequence.
ACCESSION   DATCGC010000774 DATCGC010000000
VERSION     DATCGC010000774.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1221)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1221)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1221
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_343430"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..205
                     /locus_tag="VIJ87_07515"
     CDS             <1..205
                     /locus_tag="VIJ87_07515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444300.1"
                     /translation="GPPWDRPATKAFSDIWIEKLGRTIHADEHIGRYEFIGHLASEDI
                     RKKYVGHKIPKRHTGNPTMYFNC"
     gene            477..1181
                     /locus_tag="VIJ87_07520"
     CDS             477..1181
                     /locus_tag="VIJ87_07520"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5444301.1"
                     /translation="MFLSLLTISISLFTAGVHYSTAHLGVLHTQEINGAAQNIFGRPN
                     DPEVRQGRASRTASQAIDEVEDALAKANSARNATPPRYRDAELTYGFTARLNPRDPRP
                     LMGLANILYDQKQFAAAAKIYQEALTMVTSMASFGGATLRGELNPGEQRSMASELRVY
                     FGISLLETNDFKNAQAQFERAIKSEPTNARWHALFGYSLLKQGAKPDAVKALQEAVRL
                     DPGNSDYQQLLQSTQR"
BASE COUNT          315 a          351 c          290 g          265 t
ORIGIN      
        1 aggtcccccc tgggaccgcc cagcaacgaa agccttcagc gacatctgga ttgaaaagct
       61 gggccgcacc atccacgccg acgaacacat cggccgctac gaattcatcg gccacctcgc
      121 gtcagaagac atccgcaaaa aatacgtcgg ccacaagatt cccaagcgtc acaccggcaa
      181 tccgaccatg tatttcaatt gttaacagga tgaagcgctg agtctggcta acagttgagc
      241 catggcatcg gcttcgccgc ccgatgtggg gaatggctgt gcctttccgc gggcgacctt
      301 taagaatctt gggctaagcc ctctccccgc acaactctct caatattctc cggctcatct
      361 cgcttcggcc acaaaacgaa agtcgttgcc gggcaggatc gcaacagcca aggagtagct
      421 gtgatacgat ttgccccgca caaaacgaag ctaaatatta cgaaggatgt tccaaggtgt
      481 tcctctctct actcacaatc tccatctcct tattcacagc tggcgtccac tattcgactg
      541 ctcatttagg tgtgcttcac acacaagaga tcaatggagc ggcgcagaat atttttggtc
      601 gaccaaatga tccggaggtg cgacaaggtc gcgcgtcccg tactgcttcc caggctatcg
      661 acgaagtgga agatgctttg gcaaaggcaa actccgcccg caatgcaact ccgccacgtt
      721 accgcgatgc cgagctgact tatggattta ctgccagatt gaatccgcgg gatccaagac
      781 ctctgatggg gcttgccaat atcttgtacg accaaaagca gtttgcggct gcagcgaaga
      841 tttatcagga agccttgacg atggtgactt caatggcgtc gttcggtggt gccactcttc
      901 gaggagaact taaccctggc gagcaacgga gtatggcgtc cgagctgcgt gtttactttg
      961 gaatctcact ccttgaaact aacgacttca aaaatgcgca agcacagttt gaacgagcga
     1021 ttaaatctga accaaccaac gcgcgatggc atgcactctt cggctactcc cttctcaaac
     1081 aaggagccaa accggacgca gtcaaggccc ttcaggaagc tgtacgactc gacccaggaa
     1141 attccgacta ccagcaactc ttacaatcaa cgcaacgatg aataacaaat gtccgatatg
     1201 ctttagcttg tcgtgactct a
//
LOCUS       DATCGC010000775         1713 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_44251, whole genome shotgun sequence.
ACCESSION   DATCGC010000775 DATCGC010000000
VERSION     DATCGC010000775.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1713)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1713)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1713
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44251"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1115
                     /gene="allB"
                     /locus_tag="VIJ87_07525"
     CDS             <1..1115
                     /gene="allB"
                     /locus_tag="VIJ87_07525"
                     /EC_number="3.5.2.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR03178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004038 - allantoinase activity [Evidence
                     IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0050897 - cobalt ion binding [Evidence
                     IEA];
                     GO_process: GO:0000256 - allantoin catabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="allantoinase AllB"
                     /protein_id="HEY5444302.1"
                     /translation="RAAAAGGVTTLIDMPLNSIPATTSSAAFHSKLNAAQNKCHVDVG
                     FWGGVIPGNTSELALMKRDGVVGFKCFLVPAGVDEFPHVTEADLREAMPELSRLDSLL
                     IVHAELPGPIDEAAPDEDSASDYASFLESRPRQAENDAIELMIRLSREFGTRVHIVHL
                     SSADAVHLIRKAQAEGVKISAETCPHYLHFAAETIPSGATEFKCCPPIRERENREQLW
                     QALADGTIGMVVSDHSPCPAEMKLGESGDFLGAWGGIASLQLRLPVVWTEANKRGFSL
                     LDLARWLCLGPAEQVGLQHRKGSIAPGFDADLIVWRPEAEFKVDKSVLRHRHKISPYI
                     GETLSGVVQKTFLRGRKIYDGREMVGLADGEFLLNS"
     gene            1123..1440
                     /locus_tag="VIJ87_07530"
     CDS             1123..1440
                     /locus_tag="VIJ87_07530"
                     /inference="COORDINATES: protein motif:HMM:NF024375.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEY5444303.1"
                     /translation="MAEIEWAGLENAEVKEKFGGIVRVKTLWRGTNGALAQVVELDAG
                     ACWDELDVHEPGPEEVYVVSGVFNDGVRDYPAGSFIHNPVGSSHIPQSKTGCTIFVFY
                     PEG"
     gene            1443..>1713
                     /locus_tag="VIJ87_07535"
     CDS             1443..>1713
                     /locus_tag="VIJ87_07535"
                     /inference="COORDINATES: protein motif:HMM:NF015522.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444304.1"
                     /translation="MDFTELIDLASERLGGAVLLTNDDFFAEKENLVKASSPIFVEDK
                     YTDRGKWMDGWESRRRRTPGFDWCIIRLGLSGIIRGVVVDTSFFRG"
BASE COUNT          395 a          414 c          488 g          416 t
ORIGIN      
        1 ccagagcagc ggcagcaggt ggcgtaacaa cactcatcga tatgccgctc aactcgattc
       61 ccgcaactac ttcctccgcc gcattccact cgaagctgaa cgctgcgcaa aacaaatgtc
      121 atgtcgatgt tggtttctgg ggaggcgtga tcccaggcaa cacgtcagag cttgcactaa
      181 tgaagcgaga cggcgtcgtt ggctttaagt gctttcttgt cccggctggt gttgatgagt
      241 ttccgcacgt taccgaggcg gatctacgag aagcaatgcc tgagctgtcg cgtctcgatt
      301 cgcttttaat cgtacacgcc gagctacccg gaccgattga tgaagcagca cccgacgagg
      361 attcagcgag tgactacgct tcgtttcttg agtctcgacc ccgacaagca gagaacgatg
      421 caatcgaatt aatgattcgt ttgagtcgag agtttggtac acgggttcac atcgtccatt
      481 tgtcatcagc cgacgccgtt catttgattc gcaaagcgca ggctgaaggc gtgaagattt
      541 ccgctgagac ttgtcctcac tatcttcatt ttgccgcgga gacaattccg tctggagcaa
      601 ccgagtttaa gtgttgccca cctatccgtg agcgcgagaa tcgggaacaa ctctggcagg
      661 cactcgctga cggaacaatt ggaatggttg tttcagatca ctctccttgt ccggcagaaa
      721 tgaaacttgg cgagagcggc gacttccttg gagcgtgggg aggaatcgct tcgcttcaac
      781 tgcggctgcc tgtggtttgg accgaagcaa acaaacgtgg tttctcgcta ctcgacctgg
      841 cgcgatggct ttgtctcggg ccagctgaac aagttggact acaacaccga aagggatcga
      901 tcgctccggg ctttgacgcg gacctaatag tgtggcggcc cgaggcggaa ttcaaagttg
      961 ataaatcagt cttaaggcat cgacataaga tcagtccgta catcggagaa acgttgagtg
     1021 gtgtcgtgca aaagactttt cttcgcggca gaaagatata tgatgggcgc gaaatggtcg
     1081 gtctcgccga cggcgagttt cttctgaatt cgtgaggttg ttatggcaga aattgagtgg
     1141 gctggtcttg aaaacgccga ggtaaaagag aagtttggtg gcatcgttcg cgtgaagact
     1201 ctctggagag gaacgaacgg cgcgctggct caagttgttg aactcgatgc cggcgcatgc
     1261 tgggacgagc tcgatgttca cgagcctggt cctgaagagg tgtatgtcgt ttcgggtgta
     1321 ttcaacgacg gcgtacgcga ttatccagca ggttctttca ttcacaaccc ggttggctca
     1381 tcacacatcc cgcaatcgaa gactggttgc acaatcttcg tcttctatcc ggaaggttaa
     1441 ggatggattt taccgaactg atcgacctgg catcggaacg actcggcggc gcagttctcc
     1501 taaccaacga cgacttcttt gctgaaaagg aaaatctcgt aaaggcgtct tcgccaatct
     1561 tcgttgaaga taaatacact gatcgtggta agtggatgga tggttgggag agtcgacgac
     1621 ggcgaacacc gggatttgac tggtgcatca ttcggctcgg gctgtcggga ataattcgag
     1681 gggtcgtagt tgataccagc ttctttcgcg gta
//
LOCUS       DATCGC010000776         1483 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_178717, whole genome shotgun sequence.
ACCESSION   DATCGC010000776 DATCGC010000000
VERSION     DATCGC010000776.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1483)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1483)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1483
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_178717"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..534)
                     /locus_tag="VIJ87_07540"
     CDS             complement(<1..534)
                     /locus_tag="VIJ87_07540"
                     /inference="COORDINATES: protein motif:HMM:NF012271.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HEY5444305.1"
                     /translation="MTVRVTIADLMPGTPYTVRVRAKNDSGVSEWSVALPLTTITDTN
                     APAVPANVTWTVQGDSFHGEWDAVTQNTNSLPVLISNYEVRIVAGATTRVVQVAPGTT
                     GSKNTFDLPFATNLALFGTPQPAITMSVRAVDSYGLIGNYSTGILATNPAPAVPTAVT
                     VTAGVDSLDISWTPPADT"
     gene            complement(531..1391)
                     /locus_tag="VIJ87_07545"
     CDS             complement(531..1391)
                     /locus_tag="VIJ87_07545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444306.1"
                     /translation="MITTNGKLVVKRYLAQYVPTMAQSIAFGIGAATETLADIALQLQ
                     VAQSQIDVVAYDFVNNAVVYKASVPDDYVGSIYEVGLYSLVEDPNATNFGSQTLSTFD
                     SQTELWTDTGTGNASTFGASSTRVGIDSLLQTPALSTTKTDRLAALTLDLSGYSGSDY
                     FTFAYNVGNTNTTGVTFRFMTDGSNYYSFALSGTNVTTTGYKIVTANKSTATVTGAPS
                     WANITEIQVATTSGAGGASALAFDAIRIEDVDSINLDYVLVARKVLSSPVTKVAGQAQ
                     DIEFSLDVTV"
BASE COUNT          365 a          370 c          382 g          366 t
ORIGIN      
        1 tgtgtctgct ggtggtgtcc atgagatatc caggctgtcc acgcccgcag taacggtgac
       61 cgctgttggt acagccggtg ctgggtttgt ggctaagatg cccgtcgagt agtttccaat
      121 caacccataa ctgtcaacgg cacgtacaga catagtaatg gctggctgtg gagtgccgaa
      181 caaagcgagg ttggttgcga atggtaaatc gaatgtattc ttgctaccgg ttgtgcctgg
      241 ggcaacctga accactctcg tcgttgctcc ggcaacaatt cttacttcgt aattactaat
      301 aagtacagga agactattgg tgttttgagt taccgcgtcc cactcgccgt ggaatgaatc
      361 gccttgaacg gtccaagtta cgtttgccgg tactgctggt gcattggtat ccgtaatagt
      421 tgtgagcggt aatgcgacag accattcgga tacaccggaa tcgttctttg cacgcacccg
      481 aaccgtatag ggggtacccg gcataaggtc tgcaattgtt acacgtacgg tcataccgtc
      541 acgtccagac taaactcaat atcttgagcc tgacccgcga ccttggtcac cggacttgag
      601 agcacctttc ttgccaccag aacatagtca agattaatag agtcaacgtc ttcgatacga
      661 attgcgtcaa aggccaatgc cgaagcgcca ccggcaccag acgtggtagc aacctgaatc
      721 tcagtaatat tggcccatga cggagcaccg gtcaccgtgg cagtggactt gtttgccgtt
      781 acaatcttgt aacctgttgt ggtaacattt gtaccagata acgcgaacga gtaataattg
      841 gagccgtcag tcatgaatct aaaggtgacg cctgtcgtat tggtatttcc tacgttatag
      901 gcgaaggtga agtagtcgct accagaatag ccgctgaggt caagcgtgag ggctgccagg
      961 cggtctgtct ttgtggtact cagagccggg gtctgtagca atgaatcaat acccacgcgc
     1021 gtgctagaag caccaaaagt ggatgcgtta cctgtaccgg tgtcggtcca cagttcggtc
     1081 tgcgagtcaa atgtactaag tgtttgtgaa ccaaagttag ttgcattggg gtcttcgacc
     1141 aaagaatata ggccgacctc gtagatagaa cccacgtaat cgtctgggac gctggccttg
     1201 tagaccacgg cattgttaac aaagtcgtat gccaccacgt caatctgtga ctgggcgacc
     1261 tgtagttgta gagcaatgtc tgccaaggtc tctgtcgccg caccaatgcc aaacgcaatg
     1321 gactgtgcca tggtaggtac atactgagcg agataacgct taactaccag tttgccattt
     1381 gttgtaatca cttaatcacc tgtacatcat aatcactggc accaggaaca tcttcaatac
     1441 cgagcaccac gtccacgacc agttgaccgc cgccagcacg tct
//
LOCUS       DATCGC010000777         1242 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_144425, whole genome shotgun sequence.
ACCESSION   DATCGC010000777 DATCGC010000000
VERSION     DATCGC010000777.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1242)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1242)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1242
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144425"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1242
                     /locus_tag="VIJ87_07550"
     CDS             <1..>1242
                     /locus_tag="VIJ87_07550"
                     /inference="COORDINATES: protein motif:HMM:NF012618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HEY5444307.1"
                     /translation="VITAIALSDDQNYLAVGGMFPGTNAETKYAVYLYKFDSGQLVQL
                     LKGHVVQVTSLAFSRDGSFLAAGSVGFEGGRQLEENAIWIWKAGAGSWEAHQKLFGPT
                     DDVSNLAFAPNGKFLVASSHDTHVRFWNLEDPSAARSPIVKNHDDQVTSIVVSPDSQY
                     VASGGLDGKVKLWDPKGNLINQWPQLAGVASLAFSPDKKKLKLAMGLEDGNCQVFSMP
                     GGEPVSAPRRASEQFDDKVRAIAFSPDGQLVASTGGFNGEITLWRADNGDLLANSILA
                     GNGETVWSVGFAKDGNSIAFGTKHDSRQPNSYGPLEQVLRLKVATSGAEQYAQKPYRI
                     SLEGEIKDANDYLTTRTKTAAFGLNIPLGQTETRVVGTRKISTPKTDFRSLEILKSAT
                     AAPVLVPRKYDEGRSFRSFTLT"
BASE COUNT          307 a          291 c          340 g          304 t
ORIGIN      
        1 cgttattacc gcaattgcct tgtctgacga tcagaattat ctagctgtag gcggaatgtt
       61 tcctggaacc aatgccgaga caaagtacgc agtttatctc tacaagtttg actcgggcca
      121 acttgttcaa cttctcaagg gacatgttgt ccaggttact tcgttagcgt tctccaggga
      181 tggatctttt ttagcggccg gctctgtcgg tttcgaaggc ggacgacaac tcgaagaaaa
      241 cgctatttgg atttggaagg ctggtgctgg aagttgggag gctcatcaga agctgtttgg
      301 accaacagac gatgtgtcga atctggcatt tgctcctaat ggaaaattcc tggtcgcaag
      361 tagtcacgat acgcacgtca gattctggaa tctcgaggat ccgtcggcgg caagatctcc
      421 catcgtcaaa aaccatgacg atcaagtgac ctcgatcgtg gtttcacccg attctcagta
      481 cgtcgcgtcg ggcggtttag acggtaaggt caagttgtgg gatccaaaag gcaacttgat
      541 aaatcaatgg cctcaactgg cgggcgttgc gagcctggcg tttagccccg ataagaagaa
      601 actaaaactg gcgatgggct tggaagatgg aaactgccag gttttttcga tgccaggcgg
      661 ggaaccagtt tctgctccgc ggagagcttc tgagcagttt gacgacaaag tcagggcaat
      721 cgcgttctcg cctgatggac agctggtcgc ttcaaccggg ggctttaacg gcgagattac
      781 gctctggcgt gcggataatg gtgacctttt ggcgaatagc attctggccg ggaatggtga
      841 gacggtttgg agtgttgggt tcgcaaagga tggaaattca attgcctttg gtactaagca
      901 tgattctcgc cagcccaaca gctacggacc gctcgagcaa gtgttgcgct tgaaagtggc
      961 aactagcggc gctgagcagt acgcccaaaa gccatatcga atttctctcg agggagaaat
     1021 caaagacgct aacgactacc tgaccacccg taccaagact gctgctttcg gtctcaatat
     1081 tccattaggt caaacagaaa cacgcgttgt cggcacaagg aagattagca ctccaaaaac
     1141 tgactttcga agtttggaga ttctcaagtc agcgactgct gcacccgtgt tggttcctcg
     1201 aaaatacgac gaagggcggt ccttcagaag tttcactctg ac
//
LOCUS       DATCGC010000778         1216 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_44268, whole genome shotgun sequence.
ACCESSION   DATCGC010000778 DATCGC010000000
VERSION     DATCGC010000778.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1216)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1216)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1216
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44268"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(702..>1216)
                     /locus_tag="VIJ87_07555"
     CDS             complement(702..>1216)
                     /locus_tag="VIJ87_07555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444308.1"
                     /translation="PFRQRLLREEAEQFLVERVTALPRKAPVKLLIALPETERGKEQR
                     VTDALHQDFNYRRIQAEKELHRTRRFGWRSLVVALIFLTAAMLLVQLMKRYLHMGNLM
                     SVLVEGLTVFAWVALWRPGELLLYEWYPFKRDVRLFRKLEKSEIGFSYDIKEEKSARQ
                     MANPAAALSL"
BASE COUNT          293 a          297 c          338 g          288 t
ORIGIN      
        1 ttcaattggg acccgaaagt accgttcgat cagtttgatg tgagatcgct tagtaacgca
       61 cggaacgcga cagaaagtca ggtgtacaga aagcaattcc tagcttcgat acgggatagg
      121 cttggtaccg ctacagtaaa gggacaagca ttagacctgg ttcaggagct cttctcgcgg
      181 atggtgcgcg ctctgacgaa gaagacgctg tgcttcaaaa tctgcggaag gtgcccgaat
      241 agcttccgaa tctgcgcatc cggcagcaca cgccgctggc gtgttggttt cgcgggtcgc
      301 cgaacgaact ttttagaatc cgcaatgaat tctccatgcg agcgatgtgt gctgaatggg
      361 ccggatccgt cggggtggct agatattcat ttggtggatg ggacgatcat ccgccgcggc
      421 acgtgcgtgt ttcgacagcg atggtaaaca ttaggcgtat gaatctcgaa acgatgcaac
      481 cgatggacga cgcaaggatc gaccggaaga ttgtcgacct ttcgacgaat tgcgaacgga
      541 aggcgggttc tgaaagctac cgagtacgcc agattcattt ccaaccgcga aatatttcct
      601 agtcaggaat gtgcgctacg tgagttggga agaggcgtta gaggttgccg tcagctgcgg
      661 ttcactagcg atggcagtgc tatgatcgat gttgtgtagt ttcataggct caaagctgcg
      721 gcagggtttg ccatctgccg agcagacttc tcttctttga tgtcgtagct aaaaccgatt
      781 tcagatttct ccagcttgcg aaacaggcgt acgtcacgtt tgaagggata ccactcgtat
      841 aacaacagct ctccaggtcg ccacagcgcg acccatgcaa acacggttaa cccttcgact
      901 agcactgaca tcagatttcc catgtgtaaa taacgtttca tgagttgaac caagagcatg
      961 gccgccgtca aaaaaatgag agccacgaca aggctgcgcc agccgaagcg tcgggtgcga
     1021 tgaagctcct tctcagcttg aatacgtcgg taattgaagt cttggtgtaa cgcatctgta
     1081 actctctgct cttttccacg ctcagtttcg gggagtgcga tgagcagttt caccggagct
     1141 ttgcgcggta aagctgtcac gcgctcgaca aggaactgtt ctgcttcttc tctcaacaac
     1201 cgctggcgaa atggcg
//
LOCUS       DATCGC010000779         1074 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_478807, whole genome shotgun sequence.
ACCESSION   DATCGC010000779 DATCGC010000000
VERSION     DATCGC010000779.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1074)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1074)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1074
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_478807"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1034)
                     /locus_tag="VIJ87_07560"
     CDS             complement(<1..1034)
                     /locus_tag="VIJ87_07560"
                     /inference="COORDINATES: protein motif:HMM:NF024909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BatA domain-containing protein"
                     /protein_id="HEY5444309.1"
                     /translation="MSFLTPLFFLGAAALAAPILVHLVRRTRARRIQFPALVFVRQVP
                     QRTIRRRTLHNLLLLLVRCLAILLIVIAFTRPFFSNKSSAKTTAGAGATVILIDDSLS
                     MRRDQLFGDAQSKAESATDGARTDEQIALVSFDKRYTVVNRFVGDKNRIRFGIRSLSA
                     GWDGTDYEQALRGAEALLAELKTSGSKKIVMISDFQATGWSQANATFKLANDTQLTTL
                     DVGGSNPPSNVAVTNVEAHGTVFGQKYLDNLAVHLSNFSDSPKDHLQVDFQINDQTVE
                     KRELSLNSRETKVVEFTGFNLNDGANRCTIEINSGDFPLDNRFYFTLRREVPAKGLIV
                     ESSTRGRSDSL"
BASE COUNT          259 a          256 c          288 g          271 t
ORIGIN      
        1 agactgtcgc tgcgtccgcg agttgagctc tcgacgatca atcctttcgc cggcacttct
       61 cgtcttagag tgaaatagaa acggttgtct aacgggaaat cgccggaatt gatctcaatc
      121 gtgcaacgat ttgctccgtc attcagattg aaccctgtga actcaacgac ttttgtctct
      181 cggctattta agctcagttc gcgcttttcg acagtttgat cgttgatctg aaaatcaact
      241 tgaaggtgat cttttggcga gtcgctgaag tttgagagat gtaccgcgag gttatcgaga
      301 tacttttgcc caaagacagt tccatgcgct tcgacgtttg tgactgcaac attcgaaggt
      361 ggattactgc cgccaacgtc aagagtcgtc agttgagtgt cgttggcaag tttgaaggtt
      421 gcgttcgctt gactccagcc agttgcctgg aaatccgaga tcatcacgat cttttttgaa
      481 ccgctggttt tgagttcggc aagcaaagcc tcggcgccgc gcaacgcctg ttcataatcc
      541 gttccatccc aaccggcact aagacttctg atgccaaagc gaatgcgatt cttatcccca
      601 acaaatcgat taacaacggt gtagcgtttg tcgaaactca ctaaagcgat ctgttcatcg
      661 gtgcgggcac catcggtcgc tgattcagct ttactttgag cgtcgccgaa aagctgatcc
      721 cgacgcatgc tcagggagtc gtcgataagg atcacggtcg cgccggcacc ggctgttgtt
      781 ttggcagaac tcttgttgct gaagaatgga cgtgtgaacg caatgacgat cagtaggatt
      841 gcgagacaac gaacgagcag gagaagtaga ttgtggagtg ttcgacggcg aatggttcgt
      901 tgaggaacct ggcggacaaa gacgagagca gggaattgaa tgcgacgcgc acgcgtgcgt
      961 ctgaccaggt gcacgagtat cggtgccgcc aatgcagccg cgccaagaaa aaatagtggc
     1021 gttaagaatg acatctcaga tattgccgat ttccgattgc caattgccga ttga
//
LOCUS       DATCGC010000780         1029 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_44288, whole genome shotgun sequence.
ACCESSION   DATCGC010000780 DATCGC010000000
VERSION     DATCGC010000780.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1029
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44288"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..436)
                     /locus_tag="VIJ87_07565"
     CDS             complement(<1..436)
                     /locus_tag="VIJ87_07565"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5444310.1"
                     /translation="MTIWQFLQTNWPELLMLIRQHIVLVFASIAIAVVIGMPTGILLT
                     RYRSLRSPVLGLANIMQTVPSLALFGFLIPLPFIGGIGSRTALVALVLYSLLPIIRNT
                     VTGVLGVEPSIREAAVAMGMTDGQVLRQVELPLAMGVIVTGIR"
     gene            complement(557..>1029)
                     /locus_tag="VIJ87_07570"
     CDS             complement(557..>1029)
                     /locus_tag="VIJ87_07570"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY5444311.1"
                     /translation="GLFPHFTIARNVGLVPSLSGWDEQKTKSRVDELLKLVGLEPSRF
                     AERYPRELSGGQRQRVGVARALAAGPALLLLDEPFGALDPLTRASLQKEFGELTKRLG
                     KTAILVTHDVREALLLGSRIALMHAGEIVLLETPKGFLVSENAKAQAYLETLKT"
BASE COUNT          286 a          306 c          234 g          203 t
ORIGIN      
        1 cgcgaatgcc cgtgacaatc actcccatcg ccagcggcaa ctcgacctgt cgaagcactt
       61 gtccatccgt catccccata gcgacggcgg cctctctaat gctcggttca acccccagaa
      121 caccggtcac ggtgttacga ataatcggca gcaacgaata aaggacgagg gcgacgagcg
      181 ctgtacgtga gccaatgcca ccgatgaatg gtaaaggaat gagaaaacca aagagggcca
      241 ggctcgggac ggtctgcatg atgttcgcca gaccaaggac cggacttcgc aaagatctat
      301 aacgagttag cagaattcca gtcggcatac cgataacaac cgcgatggcg atcgatgcaa
      361 acacaaggac gatgtgttgc cgaatcaaca tcagcaactc cggccaattc gtttgtagaa
      421 actgccaaat ggtcatcgat acaaacttct tctctgtgtt aactctgcgc cttctgtgtc
      481 tctgcggtta acttcctgcg acacaaaacg gcttaccaca gagacacaga ggacacagag
      541 gtagcacaga gaaaattcat gttttcaagg tttccaaata agcctgggct tttgcgttct
      601 ccgaaaccaa aaatcccttc ggcgtttcca acaagacaat ctcacctgca tgcatcaacg
      661 cgatcctact cccgagtaac aacgcctcgc gcacatcatg cgtaacaagt atcgccgttt
      721 tacccagtct cttagtcagt tcaccaaact ccttctgcag gcttgcacgc gttaaaggat
      781 ccagcgcacc gaaaggctca tccaacaaca gcaaagccgg accagcagcg agtgcgcgtg
      841 ccacaccaac acgctgccgc tggcctcctg acaactcgcg tggatagcgc tctgcaaaac
      901 gcgacggttc aagtccaacc aacttcaaca actcgtcgac acgtgattta gtcttctgct
      961 catcccaacc agacaacgaa ggcactagtc caacgttgcg cgcgattgtg aagtgtggaa
     1021 agagtccac
//
LOCUS       DATCGC010000781         2326 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_178736, whole genome shotgun sequence.
ACCESSION   DATCGC010000781 DATCGC010000000
VERSION     DATCGC010000781.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2326)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2326)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2326
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_178736"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..681
                     /locus_tag="VIJ87_07575"
     CDS             <1..681
                     /locus_tag="VIJ87_07575"
                     /inference="COORDINATES: protein motif:HMM:NF012493.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HEY5444312.1"
                     /translation="KRLISREVKLGRQVYVVYPLVEESEKMDLKDATRRYEYLRDTVF
                     PKLQVGLLHGKMKPAEKEEVMKAFASGETKILVTTTVIEVGVDVPNASVMIVEHAERF
                     GLSQLHQLRGRVGRGAEKSFCVLLTSDKKTLVAQERLGIMAKTSNGFLIAEKDLEIRG
                     PGEILGTKQSGLPEFRIGNLIRDQAILEKARAASEYYLTEKALSPETKRMAKYLAKTN
                     RFGLASVG"
     gene            778..1338
                     /gene="rsmD"
                     /locus_tag="VIJ87_07580"
     CDS             778..1338
                     /gene="rsmD"
                     /locus_tag="VIJ87_07580"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: protein motif:HMM:TIGR00095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052913 - 16S rRNA
                     (guanine(966)-N(2))-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HEY5444313.1"
                     /translation="MRIIAGIYRGRHLKSPPSLDVRPTSDRLRETLFNILSPRISNVR
                     FLDLCAGSGAVGIEALSRGAAQATFVDRSRKMCGLIEANLDLCKVPEDQTEVFNSEAG
                     DFLHHAITRKIPAWDIIYFDPPYQDDYLHVLEFIGSHTEHLLTSECLVVAEHYYKNQL
                     PEEIGNIHRSRILKQGDASLSFYTIS"
     gene            1474..>2326
                     /gene="tsaD"
                     /locus_tag="VIJ87_07585"
     CDS             1474..>2326
                     /gene="tsaD"
                     /locus_tag="VIJ87_07585"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: protein motif:HMM:TIGR03723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HEY5444314.1"
                     /translation="MLVLGIETSCDETAAAVVRDGREIVSSVISSQIPIHKRFGGVVP
                     ALASREHLDKIVPVVSEAFERATVTPQDIDGLAVTIGPGLVGSLLVGVSYAKAMAYAL
                     GKPFVGVNHIEGHIYSVAFENPPIEYPAEALVVSGGHTNIFFIPEPGKYKVVARTRDD
                     AAGEAFDKVAKLLGLGYPGGPIIERLAREGDPKAVRFAIPRMGDGLPDFSFSGLKTAV
                     TKHVRETGLARVENGGEPSQGIKDLAASFQHVVVQSLVQTMEKIAEEYYPRTLIVAGG
                     VACNGKLR"
BASE COUNT          572 a          568 c          640 g          546 t
ORIGIN      
        1 aagcggttaa tctcacgcga agtaaaactg ggacggcaag tctacgtcgt ttatccgctg
       61 gttgaagaat cggagaagat ggacttaaaa gacgcgactc gtcgttatga atatctgcga
      121 gacacggtct tcccgaagtt acaagtggga ttgcttcacg ggaaaatgaa gccggccgaa
      181 aaggaagagg tcatgaaggc gtttgcttcg ggtgaaacta agatactcgt gacgacgaca
      241 gtgatcgagg taggagtcga cgtgccaaat gcatcggtaa tgatcgttga gcacgcggag
      301 cgtttcggtt tatcacaact tcatcaactg cgtggtcgtg ttggacgtgg cgccgagaag
      361 agtttctgtg tattgctgac cagcgataag aaaaccctgg tggcccagga gcgacttggc
      421 atcatggcca agaccagcaa cggttttttg atcgctgaga aagatctgga gatacgtggg
      481 cctggtgaaa tcctcggaac caaacaatcg ggactgcctg agtttcgaat cggaaacctg
      541 attcgggacc aggcgattct ggaaaaggcg cgagctgcgt ctgagtatta cttaactgaa
      601 aaagccttgt cgcctgagac caaacgaatg gccaagtacc ttgccaagac taatcggttt
      661 ggactagcaa gcgttgggta atcatcgctg ctatgtccga tatgctttag cttgtcgttg
      721 tgcttcgaga caaagtagat tgagtcaaca acaagctaaa gcatatcgga catacctttg
      781 agaatcatcg ccggcatcta tcgtggtcgt catcttaaga gtccgccttc gttagatgtg
      841 cggccgacct cagatcgcct gcgggagacg ctattcaaca ttctctcccc ccgaatcagc
      901 aatgtgcgct ttctggattt gtgtgccggg tctggcgctg taggaatcga agcgttgtcg
      961 agaggtgcgg cgcaggcgac gtttgtcgat cgctcgcgaa agatgtgtgg actaattgaa
     1021 gcgaatctcg acctatgcaa agtcccggaa gaccaaactg aggtgttcaa ctcggaagcc
     1081 ggagattttc tccatcatgc gatcacccga aagatccccg cctgggacat tatctatttc
     1141 gatccacctt accaggacga ctatctgcat gtgctcgaat tcatcggttc ccatactgaa
     1201 catttgctca ccagcgaatg tctcgtcgtc gctgagcact actacaagaa ccagctaccc
     1261 gaagagatcg gaaacatcca ccgctcgcga atactgaaac agggcgacgc gtcgctcagc
     1321 ttctacacaa tctcctaaag tcgctttctg gagtgcggtg gcctggctcc gctttagtaa
     1381 atagcttgtc ccgagaccaa agcggtgcga ggccaccgca ctccaaggag tcaccctctg
     1441 acaaccacgt gaaagagttg ttagaatcaa tttatgcttg tacttggtat cgaaacatcg
     1501 tgcgacgaaa cggccgccgc agttgttcgc gatggacgcg aaatcgtctc gtcagtcatt
     1561 tcatcccaaa tccctattca caaacgcttc ggtggcgtcg tacctgcgct tgcctcacga
     1621 gagcatctcg acaagattgt gccggtagtc tccgaggctt tcgaacgtgc cacagtgacg
     1681 ccccaggaca ttgatgggtt agcagttacg atcggaccgg gtttggtggg ctcgctgttg
     1741 gttggcgtgt catatgcaaa agcgatggct tatgcactcg gaaaaccgtt cgttggcgtt
     1801 aaccatattg aaggtcacat ctactctgtt gcgtttgaga atccaccaat cgaatatcca
     1861 gccgaggctc tcgttgtttc cggcggtcat acaaacatct tctttattcc cgaaccaggt
     1921 aagtacaagg tcgtcgcacg aacgcgagac gatgccgcgg gtgaggcctt tgacaaggta
     1981 gcaaagttac ttggtctagg ttatccagga ggaccaatca tcgaacggct cgcacgcgaa
     2041 ggtgatccca aagcagtgcg ctttgcgatt ccacgcatgg gagatggttt acctgatttc
     2101 agttttagcg ggttgaagac ggccgtgaca aagcatgtcc gtgagacggg gctggcacgt
     2161 gtcgaaaacg gcggtgaacc ttcgcaggga atcaaagacc tagcggcgag tttccagcac
     2221 gttgtggtgc agtcgctggt tcaaaccatg gagaagattg cggaagagta ttacccaagg
     2281 acgttaattg tcgctggtgg cgttgcgtgc aatggcaaac tgcgtg
//
LOCUS       DATCGC010000782         2178 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_110588, whole genome shotgun sequence.
ACCESSION   DATCGC010000782 DATCGC010000000
VERSION     DATCGC010000782.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2178)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2178)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2178
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110588"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(166..1197)
                     /locus_tag="VIJ87_07590"
     CDS             complement(166..1197)
                     /locus_tag="VIJ87_07590"
                     /inference="COORDINATES: protein motif:HMM:NF014647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BMP family ABC transporter substrate-binding
                     protein"
                     /protein_id="HEY5444315.1"
                     /translation="MKYKLLALVVLLSVAVLLMSACGQGYAADDKSKIHVGIVFDIGG
                     KDDRSFNAAAWQGVQRAAKDLPIVLRDIEPGTPNAIEPAMRAFAERNYDLIIGVGFAQ
                     APIMEQVAKDYPNIHFAIIDGVSELPNVASLVFKEHEGSYLVGILAAKASQTGTIGFL
                     GGMDIGLIHRFEKGYEEGAKSVNPDIRVIQNYVGVTDSAWNNPGKGKELSLAQIGKGA
                     DVIFTAAGNSGLGAFDAVEQQGTQNGRATHFVIGVDSNQNMVKPGFVLTSMVKRVDNA
                     VYNIVQEVFNHRFEPGLHVFGLDKDGVGYAMDDYNKNLVSPEAITLAEEAKKKIIAGQ
                     IKVTDAMFQ"
     gene            complement(1194..>2178)
                     /locus_tag="VIJ87_07595"
     CDS             complement(1194..>2178)
                     /locus_tag="VIJ87_07595"
                     /EC_number="2.4.2.4"
                     /inference="COORDINATES: protein motif:HMM:NF004490.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006206 - pyrimidine nucleobase metabolic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="thymidine phosphorylase"
                     /protein_id="HEY5444316.1"
                     /translation="LGHTGGTLDKLESIPGYRVNLSASEFRKTLEDVGYAMAGQTAEI
                     APADKKMYALRDATSTVEAIPLIVASIISKKGAAGLGAMVIDVKVGNGAFMRDESRAT
                     ALAHALVRTGNSCGIRTRALLTDMNQPLGSAVGNSIEVEECVNLLRGEFPDAARPVLD
                     LSLELSAHMLVLAGVEETLESAHVHLQKVLDSGAALECLRSNIIAQGGDPRVCDSPKD
                     FLPLVTESVKVESPRSGYITNVDTTEIGHTIAAIGGGRVRIEDVIDPTVGFFAERKIG
                     DRLNAGETIGVVYSADPAKAEEARKRIQEAYEIADEPVNKLQKLVKEVINE"
BASE COUNT          555 a          598 c          470 g          555 t
ORIGIN      
        1 aattccaacg cagcacaatt ttccaaattt cgtccgaaag ttgctcggac agtttataga
       61 tgtgaagatg cacaaaatta gtcttttcca tcttgggttc tcctgaggaa agattgataa
      121 gaccgaaaat tgaatcaaag acctaagacc aaaaaccaaa gaccctcact ggaacatcgc
      181 atccgtcacc ttaatctggc cagcaataat cttcttcttt gcttcttcag cgagtgtaat
      241 tgcttcaggg cttacgaggt ttttattgta gtcgtccatc gcgtaaccca caccgtcttt
      301 gtccaaacca aaaacgtgta gaccaggctc gaaacgatga ttgaacactt cctggacgat
      361 gttgtagaca gcgttatcaa cacgcttcac catgctcgtg aggacgaagc ctggtttcac
      421 catgttttga tttgagtcga cgccaataac aaagtgagtc gcacggccgt tttgagttcc
      481 ttgttgctca acggcatcga aggcgcccaa tcctgaattg ccggcagcgg taaagattac
      541 atctgcacct ttacctattt gggccaacga taactctttc cctttccctg gattattcca
      601 cgcgctatcc gtaaccccta cgtagttctg aataacgcga atgtctggat taactgattt
      661 cgctccttcc tcgtaacctt tctcgaagcg atgaatcaga ccaatgtcca ttccaccaag
      721 aaaacctatt gttcctgttt gtgacgcctt cgcggcgagt attccaacaa gataagaacc
      781 ttcatgctct ttgaaaacca acgaggcaac atttggcagt tcactaactc catcgatgat
      841 tgcgaagtga atgttcggat agtctttcgc gacttgttcc atgattggag cctgcgcaaa
      901 accgacaccg ataatcaaat cgtagttacg ttccgcaaac gcgcgcatag caggttcgat
      961 cgcgtttgga gtacctggct caatgtcgcg taatacaatc ggcagatcct tcgctgcccg
     1021 ctgcacacct tgccacgccg ctgcattaaa agaacgatca tccttaccac caatatcgaa
     1081 gacgattccg acgtggatct tcgacttgtc gtctgcagcg tatccctgac cacacgccga
     1141 catcagcaaa acggccacgg ataacagaac taccagcgca agaagtttgt atttcattcg
     1201 ttgattactt ccttaactaa cttctgcaat ttgttcaccg gttcgtcagc aatctcataa
     1261 gcttcctgaa tacgtttccg agcttcttca gcttttgccg gatcggcaga gtagaccaca
     1321 ccaatagtct cgcctgcgtt tagccggtca ccgattttgc gttcggcaaa gaaaccaact
     1381 gtgggatcta tcacgtcttc gatgcgcact ctgccgccac cgatagccgc gattgtgtga
     1441 ccaatttctg tggtgtcgac gtttgtgatg tagccagagc gcggggattc taccttaacg
     1501 gattcagtta ccaaaggaag aaaatctttc ggagaatcac aaacacgcgg gtcgccgccc
     1561 tgcgcaatga tgttgcttcg gaggcattct aaagcagcgc ctgagtcgag aactttttgc
     1621 aggtgaacat gcgccgactc cagggtctct tcaacgccag ccagcaccag catatgcgct
     1681 gaaagttcaa gcgagagatc caataccggt cgagccgcat ctggaaactc accacgcaat
     1741 aggttgacgc actcttcgac ctcaatcgag ttgccaaccg cgcttccgag cggttgattc
     1801 atgtccgtca ataatgctcg cgttctgata ccgcaagaat ttccggtcct cacgagcgca
     1861 tgtgcaagcg cagtcgctcg tgactcgtct cgcatgaacg caccattgcc caccttaacg
     1921 tcaatcacca tcgcaccaag acctgcggca ccctttttag aaataataga ggccacaatt
     1981 aacgggatag cttcgacagt agaagttgca tctcgaagcg cgtacatctt cttatccgcc
     2041 ggcgcgattt ctgcagtttg accagccatc gcgtaaccga catcttcgag tgtcttgcga
     2101 aactccgaag cacttaggtt gactcgataa cctggaatcg attccaactt gtcgagcgtt
     2161 ccacctgtat gaccaaga
//
LOCUS       DATCGC010000783         2830 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_409966, whole genome shotgun sequence.
ACCESSION   DATCGC010000783 DATCGC010000000
VERSION     DATCGC010000783.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2830)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2830)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2830
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_409966"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..193
                     /locus_tag="VIJ87_07600"
     CDS             <1..193
                     /locus_tag="VIJ87_07600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444317.1"
                     /translation="SGIIVHHMNPMEAADISQGDPRILDVDQLICCSLKTHNAIHYSD
                     EGQLPRLFAERSPGDTTLW"
     gene            208..768
                     /locus_tag="VIJ87_07605"
     CDS             208..768
                     /locus_tag="VIJ87_07605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444318.1"
                     /translation="MRTPSQALHAAMLTVNNVPGMCQFVTRGWLDAPSAGDFDGDGAA
                     DAEDGWKKEPGSARRFDRNPPAGYPVTYLGGSKDNGHRALSAGRINGVTHIRSTDAGG
                     TGRVATVPLDFPEKNWGLTYAGWSTTMDGVPIPRDKNTRGWRVDRALNRLIRAEKHSA
                     DGTHRDTVLDRVIASLKSLPTHLKRK"
     gene            816..1061
                     /locus_tag="VIJ87_07610"
     CDS             816..1061
                     /locus_tag="VIJ87_07610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444319.1"
                     /translation="MSYTVDKENQLREARRRSRFGSIASLARQGVGNDMAEEQKAAMK
                     TKPAKKTAKKTSAAKKDAPKTSATAKKATAKKTTKKS"
     gene            1075..1443
                     /locus_tag="VIJ87_07615"
     CDS             1075..1443
                     /locus_tag="VIJ87_07615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444320.1"
                     /translation="MPEVMDSILLSIKKLNSVPQDYTAFDDDFVMWINGALSDLVQLG
                     IGPTEGFSVEDENDEWDDYLPSSHLRDGVKTYIALHVRTFFDPLPTSFGQQMMKDQLE
                     EKAWRLKAMQEDLDREAVEQ"
     gene            1440..1832
                     /locus_tag="VIJ87_07620"
     CDS             1440..1832
                     /locus_tag="VIJ87_07620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444321.1"
                     /translation="MTTLEIAQRPQEVSLIWVAGDALRFTLTIVDPDPDSPDPENPVM
                     IPRNLTGYVAASQIRKNAKPDSVLLAEFEFNTLDGSGVIAAYLSPDESEKLRGTNSAS
                     WDLQLTDPEGDPLTLMAGPAKPSGDVTR"
     gene            1829..2740
                     /locus_tag="VIJ87_07625"
     CDS             1829..2740
                     /locus_tag="VIJ87_07625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444322.1"
                     /translation="MSEMILELRDGDTIQLELPTPIHMTVDQGRGPQGPSGSDGADST
                     VPGPKGDKGDKGDTGDPGADSTVPGPKGDKGDKGDTGDAGADSTVPGPPGEDGPSAYE
                     VAVSNGFTGTEAEWLDSLVGPEGPEGPEGAASTVPGPPGTDGADSTVPGPKGDKGDKG
                     DTGDPGADSTVPGPPGSDGADGDSAYEVAVNNGFSGTEAEWLESLVGADGADSTVPGP
                     TGSTGPAGADGSKWYTGSGAPSNGTGANGDFYLRSNGDYYGPKASGAWGSVAGSLLGP
                     TGATGATGPAGSAGGGSAIDAFLLMGA"
BASE COUNT          679 a          735 c          853 g          563 t
ORIGIN      
        1 ctcaggaatc atcgtgcacc atatgaatcc aatggaagct gcggacatct cacaaggaga
       61 tccgagaatc ctggatgtgg accagctaat ttgctgttca ctcaagacac acaacgctat
      121 tcactactcc gacgaagggc agctcccccg gctcttcgct gaacgtagtc ctggcgatac
      181 cacattgtgg tagggaggat gacaatcatg aggacaccaa gccaagcatt gcacgccgca
      241 atgcttaccg tgaacaacgt tcccggcatg tgccaattcg taacccgagg atggctcgat
      301 gccccgagtg ctggagactt cgatggtgac ggtgcagctg acgctgaaga tgggtggaag
      361 aaggaaccgg gctcggcccg acgcttcgac cgaaaccctc ctgcgggcta tcccgttact
      421 tacttgggag gtagcaagga caacggacac agggctctca gtgcggggcg gatcaatgga
      481 gtcacgcaca ttcgcagcac tgatgctggg gggactggcc gggtggctac tgtaccactg
      541 gactttcccg agaagaactg ggggctgacc tacgccggat ggtcgacgac catggatggt
      601 gtgccgatcc ccagggacaa gaacactcgt ggatggcgag ttgaccgtgc tctgaatcgt
      661 ttgattcgag cggagaagca cagtgcagac ggaactcatc gagacacggt tctcgatcga
      721 gtcatcgctt cactgaagtc tcttccgact catctgaagc ggaagtagtt cacaaaagct
      781 caaaatcgaa agtcaatctt gagggaggtg acacgatgag ctacacagtc gacaaggaga
      841 accagcttcg agaagcgcgc aggcgcagcc gattcggttc gattgcttct ctggcccgac
      901 agggcgtcgg aaacgacatg gcagaggagc agaaggcggc tatgaagacc aagcccgcca
      961 agaagactgc caagaagacg tctgctgcca agaaggatgc accaaagacg tctgcgacgg
     1021 ccaagaaggc caccgcaaag aagacaacca agaagtcctg aaggaggtgt gaccatgccc
     1081 gaggtaatgg acagtattct gctgagcatt aagaagctga acagtgttcc gcaggactac
     1141 acggcattcg atgatgactt tgtcatgtgg atcaacggcg cgctctcgga tctcgtccaa
     1201 ctgggcatcg gtcctactga gggcttcagc gtcgaggacg agaatgatga gtgggacgac
     1261 tatctcccct caagtcatct ccgagacggc gtgaagactt acatcgcact ccacgtccgt
     1321 acattcttcg accctctgcc gacctctttc ggtcagcaga tgatgaagga tcagctggaa
     1381 gagaaggcat ggcgtctcaa ggccatgcaa gaggatctag atcgagaggc ggttgagcag
     1441 tgacaacttt ggaaattgcg caacggcctc aagaggtctc tttgatctgg gtggctggtg
     1501 atgcgcttcg tttcacgttg acgatcgtag atcctgaccc agattcacca gatccggaga
     1561 atcccgtgat gattcctcga aatctcacgg gatacgtagc agcatcacag attcgaaaga
     1621 acgcaaagcc ggattctgta cttctggccg aattcgagtt caacactctc gatgggagtg
     1681 gtgtgatcgc tgcatattta tctccagacg agtctgagaa gcttcgtgga acaaacagcg
     1741 ctagctggga tctccagttg accgaccctg agggtgaccc cctgacactc atggccggtc
     1801 cggctaagcc ttctggagac gtgacgcgat gagtgagatg atccttgagc ttcgtgatgg
     1861 agacacgatt cagctagagc ttccgactcc aattcacatg actgttgatc aaggacgtgg
     1921 ccctcagggt ccttctggtt ctgatggagc tgattcgaca gtccctggtc cgaagggaga
     1981 caagggtgac aaaggcgaca cgggagatcc aggcgctgac tccacagttc cgggccccaa
     2041 gggcgacaaa ggcgataagg gagatacagg tgacgccgga gctgattcga cggtgccggg
     2101 acctcctgga gaagatggcc cgagcgctta tgaggttgca gtcagcaatg gtttcactgg
     2161 cacagaggct gaatggctcg atagccttgt cggacctgag ggtccggaag ggccagaggg
     2221 tgcagcgtct acagttcccg gtcccccagg caccgatggt gctgactcca cagttccggg
     2281 ccccaagggc gacaagggtg ataagggaga tacgggagat cccggcgcag attcgaccgt
     2341 acctggacca ccaggttccg acggtgcgga tggcgacagc gcgtacgaag ttgccgtcaa
     2401 caacggtttc tcgggcacgg aagcagagtg gctagagagt cttgtaggag ccgatggagc
     2461 tgactctacc gttcctggac ctacgggttc gaccggaccg gcaggagcag acggatccaa
     2521 gtggtacaca ggatctggtg ctccttcaaa tggaactgga gctaacggag atttctatct
     2581 tcgttcgaac ggtgactatt acggtcccaa ggcctctgga gcttggggat ctgttgcggg
     2641 cagtctctta ggtcctactg gtgccaccgg tgctacaggt cctgctgggt cagcaggcgg
     2701 tggatctgcg attgacgctt tcttactgat gggagcatga catgacaact acgtacaagg
     2761 ttctgggtca ggtcgctccg tcggcaaaca cggataccga tctgtatacg gttccgggaa
     2821 gcactcagac
//
LOCUS       DATCGC010000784         1450 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_15833, whole genome shotgun sequence.
ACCESSION   DATCGC010000784 DATCGC010000000
VERSION     DATCGC010000784.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1450)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1450)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1450
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15833"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            160..450
                     /locus_tag="VIJ87_07630"
     CDS             160..450
                     /locus_tag="VIJ87_07630"
                     /inference="COORDINATES: protein motif:HMM:NF024845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-TFIIB domain-containing protein"
                     /protein_id="HEY5444323.1"
                     /translation="MADGVDEDYFERKNKEAIEKLRAKMKVAEDAKAAGLSSMLCPRC
                     AGALKESKFEEVMIDTCEKCGGIWLDSGELEQLLKRDSNTDSWFSRLWFAEG"
     gene            552..>1450
                     /gene="hutU"
                     /locus_tag="VIJ87_07635"
     CDS             552..>1450
                     /gene="hutU"
                     /locus_tag="VIJ87_07635"
                     /EC_number="4.2.1.49"
                     /inference="COORDINATES: protein motif:HMM:TIGR01228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016153 - urocanate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urocanate hydratase"
                     /protein_id="HEY5444324.1"
                     /translation="MNRETIHAPRGSQLTCKSWHQEAALRCLMNNLDPDVAEKPDELI
                     VYGGAGKAARNWNCFDAIVRELQTIENDETLLVQSGKPIGVFRTHDYAPRVLIANSNL
                     VGAWANWEHFHELERRGLMMYGQMTAGSWIYIGTQGIVQGTFETFAAMADKQFGGDLS
                     GKLVVSGGMGGMGGAQPLAATLNGAVFLGIDVDPARIDRRVRTGYCDRITFTLDEALK
                     ICEEAREQKQAVSVGLVGNCAELMPEIVRRGVKVDVVTDQTSAHDPLNGYVPAGLSLI
                     EAEELRQANPSDYIKRSMHSMAQ"
BASE COUNT          360 a          330 c          427 g          333 t
ORIGIN      
        1 gactaatttt tggtagtgac ccaattcgaa ctctgtgtgt tacctctgtg ccctctgtgt
       61 ctctgtggtt gagtaagtgg ctgagatagg ttcaccacag agacacacca cagagaaaac
      121 tcaaactcgg gcactgccta aatctcggag gaagaactca tggcggatgg agttgacgaa
      181 gattactttg agcgcaagaa caaagaggct attgaaaagc tacgagccaa gatgaaagta
      241 gctgaggatg cgaaggcggc gggactttca tcgatgttat gtccccgctg tgcgggcgcg
      301 ctcaaggaga gcaagtttga agaagtaatg atcgacactt gtgaaaagtg tggaggcatc
      361 tggctcgact ccggagaatt agaacaactt ctcaaacgcg acagtaatac cgatagttgg
      421 ttcagtcgtc tttggtttgc cgaaggctga gattgtggag tgcggtggcc tggcaccgct
      481 ttggcctcag aaagacttcc gaagaaatta ccaaagcggt gccaggccac cgcactccaa
      541 agaaagttct tatgaacagg gaaacgattc acgcgccgcg cggttcacag ttgacttgca
      601 agagttggca tcaggaagcc gcgctgcgtt gtttgatgaa caatctcgat ccggatgttg
      661 ctgagaagcc ggacgaactc atcgtctatg gtggggctgg gaaggcagcg cgcaactgga
      721 attgtttcga cgcgatcgtt cgcgagctgc agaccattga aaacgatgaa accctgttgg
      781 tgcagtccgg caagccgatc ggagttttta gaacccatga ctacgccccg cgagtattaa
      841 tagccaactc gaatctcgtt ggcgcctggg ccaactggga acactttcat gaacttgaac
      901 gtcgtggctt gatgatgtac ggccagatga ccgccggtag ttggatctac attggtacac
      961 agggaatcgt ccagggaacc tttgaaacat ttgcggcaat ggccgacaaa caatttggcg
     1021 gtgatctctc aggcaaactg gttgtgtccg gtggcatggg tggaatgggc ggcgctcagc
     1081 cacttgctgc tacgctgaac ggcgccgtgt ttttgggcat tgatgtcgat ccggcccgta
     1141 ttgatcgtcg tgtgcggacg ggttactgcg atcgcattac tttcacgctt gatgaggcgt
     1201 tgaagatttg tgaagaagca cgtgaacaaa agcaggcggt gtcagttggg ttggtgggaa
     1261 actgcgcgga gttaatgccg gagattgttc gacgcggcgt caaggtagat gtcgttacgg
     1321 atcaaacgag tgctcacgat ccactcaacg gctatgttcc tgcggggctt tctttgatcg
     1381 aagccgaaga actacgccag gcaaatccaa gcgactacat aaagcgatcg atgcattcga
     1441 tggcccaaca
//
LOCUS       DATCGC010000785         1226 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_144530, whole genome shotgun sequence.
ACCESSION   DATCGC010000785 DATCGC010000000
VERSION     DATCGC010000785.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1226)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1226)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1226
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144530"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            409..573
                     /locus_tag="VIJ87_07640"
     CDS             409..573
                     /locus_tag="VIJ87_07640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444325.1"
                     /translation="MKIENPTALLAALKPVDMPIGLIHFDSDFCWCDPTIEADDYGRY
                     IIVHRQVTWN"
     gene            981..>1226
                     /locus_tag="VIJ87_07645"
     CDS             981..>1226
                     /locus_tag="VIJ87_07645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444326.1"
                     /translation="MKITSAFFAGLLLIGALGVVNSAAAADGMIEKVPLTADSYCHEQ
                     FPAIEGRTLDSNNPTLKDANSGDVIDYYGPCSETPTGK"
BASE COUNT          301 a          329 c          287 g          309 t
ORIGIN      
        1 gttgctcgtc cggtaccgat caaaaccgaa agttcaactg aatctcccat gcagcgcatg
       61 acaaagaaat cgcgcagcac agggcaccga cgtcgatcac gataaatttc accatccgtt
      121 agcgcggctt tccgcaattc tcgtatcgat ctctggtcca tcgaagtgtc aattggccgg
      181 cagctgctag cccgttggca ccccgtcaat ccgacacggt cacttcgatt cgtcgtttct
      241 aacgatacgc ccgctaaact cgggaatgct cggacgccgt gagcactcgc gtccatttgg
      301 cataaccctt gctcctaggt tgctcagatg gagcagtaac atcggttcca aataatcaac
      361 ggggctttgt cgcgtgcctt gcgtcgaatt gatcaaggag attccatcat gaagatcgaa
      421 aatccaaccg cgctattagc cgcactcaaa cctgtcgata tgccaatagg tctgattcat
      481 tttgactcgg acttctgttg gtgtgatccg accatcgaag cggacgacta cggccgctat
      541 ataattgtcc accgacaagt gacgtggaac tgaagtttgg cgcagcggta ctactgagct
      601 gcgtcgcgca aagcaatctt attgatgagt catcccccca caacccaatc aacttcttca
      661 ttcattgaag aggttgtcat cctatctact atgctgccga gagcgacgtc catgcgtcgc
      721 tgattcatct ctaatctatt tactcttgaa acgtagcgag cgcgcttaag ttaaggcatg
      781 aaatcctccg tcgggtcttg ctacgtgagc ttgtcacctg tcgataaatc gacacgattc
      841 tttgctgcac ctgattacga actctattaa gcgactataa tttcgctttc attacgacct
      901 tgttcggcat tgcaaatggt cttttacccg ttcggcacac cgattgcggt gtgtagccta
      961 caagaaagga ggtgagaacg atgaaaatca caagcgcatt ttttgctggc ttgcttttga
     1021 ttggcgcgct aggtgtcgta aacagcgcag ccgccgcgga tggaatgata gaaaaggttc
     1081 cgctcaccgc agacagttac tgccatgagc aattccccgc cattgagggt cgtactttag
     1141 attcaaacaa tccgactctt aaggacgcaa actccggtga tgtgattgac tactacggcc
     1201 cgtgcagtga aacgccgacc ggaaaa
//
LOCUS       DATCGC010000786         1204 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_409982, whole genome shotgun sequence.
ACCESSION   DATCGC010000786 DATCGC010000000
VERSION     DATCGC010000786.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1204
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_409982"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(100..>1204)
                     /locus_tag="VIJ87_07650"
     CDS             complement(100..>1204)
                     /locus_tag="VIJ87_07650"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="hybrid sensor histidine kinase/response
                     regulator"
                     /protein_id="HEY5444327.1"
                     /translation="TLAGILGRAQLLQRTNDPEKIKRGLDIIVKTAEDGAKTVKRIQD
                     FARQRRDHDFELISVDQILTDASEITRPRWKTCSEAANIHIRLDLQINSNAMIMGDDS
                     ELREVLVNMVFNAVDAMPEGGTLRLATSTVGETVVISIADTGVGMYPEVRSRVFDPFF
                     TTKGTAGLGLGLAVSFGIIRRHGGNIEVESSYGNGSEFRITLPLASVATKAQPVINRE
                     VNHSIQNVTRLPEQPQTKVLVVDDEDFVRELLTEILELEGCEVQSADSGARALEIFGT
                     THFDCVFTDVGMPGMSGWELAQAIRGMNKSIPIAVITGWGEAVGSDEQKAAGVDWVVA
                     KPFTADRIAELVKEINEKHHDIEELEGLAVAAA"
BASE COUNT          264 a          323 c          301 g          316 t
ORIGIN      
        1 cacttcaagc gggacgtgag tcaggcaaaa ataccaggct gcggctgatt tacgataggc
       61 aggactgaca acatttccag ctttccagta cgttcgcagt taggccgcgg cgactgcgag
      121 gccttcgagc tcttcgatgt cgtggtgttt ctcattgatc tctttgacga gttcagcaat
      181 tcggtctgcg gtaaatggtt ttgcgaccac ccagtcgacg ccggctgcct tctgttcatc
      241 agagccgacg gcttcacccc agccagttat gacggcaatc ggtatggact tattcattcc
      301 ccgaattgcc tgagcgagtt cccaaccgct cattcccggc attccgacgt cagtaaagac
      361 gcaatcgaaa tgcgtagtgc caaagatctc aagcgctcgt gctccggaat ccgcgctttg
      421 aacttcgcat ccctccaact ctaaaatctc agttaacaac tcacgaacaa aatcttcgtc
      481 gtctacgacc agcactttgg tttgcggttg ttctggaagt cgagtgacgt tttgaatcga
      541 atggttgact tcgcgattta ttaccggttg tgccttggta gcgacgctag ccaatggcaa
      601 cgtgatgcgg aactccgaac catttccata gctggattcg acctcaatgt taccgccgtg
      661 acggcgaatg atgccgaagc taacagccag tccaagaccg aggccggccg taccttttgt
      721 ggtaaagaat ggatcaaata ctcgagacct gacttcgggg tacattccga cgcctgtatc
      781 tgcaatcgaa atcacaacag tttcgcccac cgtactggtc gccagtctta gtgtgccgcc
      841 ttcaggcatt gcgtcgacgg cattgaagac catgttgacg agcacttcac gaagctcaga
      901 atcatcaccc atgatcattg cgttcgagtt gatttgcagg tccagcctta tgtgaatgtt
      961 tgcggcttca gagcaggtct tccaacgggg ccgtgtaatt tcgcttgcgt cggtcaggat
     1021 ctgatctact gagatcagct caaagtcgtg atcccgtcgt tggcgagcga agtcctgaat
     1081 tcgcttaaca gtttttgcgc cgtcctcagc tgttttcaca atgatgtcga gtcctcgttt
     1141 gattttttcc ggatcatttg ttcgttgcaa gagttgcgcg cggccaagaa ttccggccaa
     1201 cgtg
//
LOCUS       DATCGC010000787         1202 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_478900, whole genome shotgun sequence.
ACCESSION   DATCGC010000787 DATCGC010000000
VERSION     DATCGC010000787.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1202)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1202)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1202
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_478900"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..395
                     /locus_tag="VIJ87_07655"
     CDS             <1..395
                     /locus_tag="VIJ87_07655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444328.1"
                     /translation="VFSFFKVGQRFYVPRVQQQPRREDVFNSYANVMNQAQETAAAIV
                     YERDFRNVAASTQMLQSTISPDPKAEELKVRLLILFGKAKATANASPSPGDEKRSVPA
                     DQKLIEEYVALRKDYDAWLKSAAPKADR"
     gene            429..>1202
                     /locus_tag="VIJ87_07660"
     CDS             429..>1202
                     /locus_tag="VIJ87_07660"
                     /inference="COORDINATES: protein motif:HMM:NF014757.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase family protein"
                     /protein_id="HEY5444329.1"
                     /translation="MEIKKVGVLGCGLMGAGIAQVAASAGFETVVKEISDELIAKGFG
                     GIEKSLAKFAEKGTITADQQKDIRGRLSGTTSFAELADCDIIIEAIIENLEEKRSTYK
                     QLDELCKPETIFASNTSSLSITEMMTATSAERQKRFIGLHFFNPVPLMKLVEVVRTIL
                     TDDAVYEQAVGFGKTLGKVPVRASDKTGFIVNRLLVPYMLDAIRALEENVGSIVDIDN
                     AMKLGCGYPMGPFTLGDFVGLDTTYYIAEIMFNEFREKRF"
BASE COUNT          332 a          268 c          322 g          280 t
ORIGIN      
        1 tggttttcag ttttttcaaa gtgggccaac gcttctacgt ccctcgtgtc caacaacaac
       61 caagacgcga ggacgttttc aattcttatg caaacgtaat gaatcaagcc caggaaactg
      121 ctgctgcgat agtctatgag agagacttca gaaatgtcgc ggcgtcgacg cagatgctcc
      181 agtcgacaat ctcaccggat ccaaaagccg aagagctaaa ggtacgcttg cttattttgt
      241 ttgggaaagc aaaagcaacc gcaaatgcga gcccttcgcc gggagatgag aagcggagtg
      301 tacctgctga tcagaaactg attgaagagt atgttgccct gcgaaaagat tatgacgcgt
      361 ggctcaagtc ggccgcgcca aaagcagatc gatagaaacc aagtatttca tttaaccagg
      421 agacagagat ggagataaag aaagtaggag ttttgggatg cggtttaatg ggtgccggta
      481 ttgctcaagt tgcggcaagt gcaggattcg aaactgttgt taaagagatt tccgatgagc
      541 tgattgcgaa gggttttggg ggaattgaga agtcgctggc aaagtttgcc gagaaaggga
      601 caatcactgc tgatcagcaa aaggacattc gcggtcgtct gtccggcacc acgtcgtttg
      661 cggagcttgc cgactgcgac atcatcatcg aggcaatcat cgaaaacctc gaagagaagc
      721 gaagcaccta caaacaactt gatgagttgt gtaaaccgga aacaatattc gcatcaaaca
      781 cgtcgtctct ttcgatcact gaaatgatga ctgcaacgtc ggctgaacga cagaagcgtt
      841 tcattggact tcactttttc aatccggtcc cactgatgaa gctggtcgaa gttgtacgga
      901 caattctgac cgacgacgcg gtgtacgaac aggcagttgg gtttggcaag accctcggta
      961 aagttccggt tcgggccagc gacaaaaccg gattcatcgt gaatcgcttg cttgtgcctt
     1021 atatgctcga cgcgatccgg gcgttggaag aaaacgttgg atcgatcgtg gatatcgaca
     1081 atgctatgaa gctcggatgt ggatacccga tggggccgtt cacgctcggc gacttcgtag
     1141 gcctcgacac aacctattac atcgcagaaa tcatgttcaa tgagtttcgc gaaaaacgtt
     1201 tt
//
LOCUS       DATCGC010000788         1455 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_44404, whole genome shotgun sequence.
ACCESSION   DATCGC010000788 DATCGC010000000
VERSION     DATCGC010000788.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1455)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1455)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1455
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44404"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..332)
                     /locus_tag="VIJ87_07665"
     CDS             complement(<1..332)
                     /locus_tag="VIJ87_07665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444330.1"
                     /translation="MFDSKRRAFLQQSGFGLAAIGVSGLVLRSDAQPTPQVSRDQSDR
                     TLIQMGSVKTEGLPSNTELKKVTPFPYGPFYKTGAPFRGKLSLPGEPGTQFVLSGRVW
                     ALDTKRPLA"
     gene            complement(529..>1455)
                     /locus_tag="VIJ87_07670"
     CDS             complement(529..>1455)
                     /locus_tag="VIJ87_07670"
                     /inference="COORDINATES: protein motif:HMM:NF012931.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 20 glycosylhydrolase"
                     /protein_id="HEY5444331.1"
                     /translation="KDLPTLAKQGINFIILEVDYNFAFKSHPELRRGTNPITRDGARR
                     FATLCKKLNIRLIPQFQSLGHQSWKAETFPLLTSYPNFDVTPGAFPNNEGIYCREWDP
                     LNPEVWRIVFQLMDEIIDAFNADAFHVGMDEIFLLGSEQSPSTKGKDSGVLFAKAVNE
                     IYSHLVKKRHVEMLMWGDRLIDGKKYDFGEWEAALNGTATAVDLIPKDIIICPWHYEV
                     RDNYPSILMFTEKGFRVLPAGWKDVDATRALIGFSQTHAGAKLLGHMFTTWGVKKDAL
                     LEFPPLVEGLKLIREIETKKVASKQEQVTPEN"
BASE COUNT          362 a          374 c          337 g          382 t
ORIGIN      
        1 gccaacgggc gtttggtatc cagagcccac acccgacctg atagtacgaa ctgggttccc
       61 ggttcaccgg gtaaacttag ctttcctctg aatggcgcac ctgttttgta aaacggacca
      121 tacggaaatg gcgtcacctt cttgagttca gtgtttgaag gtaaaccttc tgtcttcact
      181 gaccccattt ggatcaaggt cctgtcagat tgatcccgac taacctgtgg tgttggttgt
      241 gcgtcgctac gcaaaaccaa acctgagacc ccaattgccg ctaatccaaa tccactttgc
      301 tggagaaaag ctcgccgctt tgaatcaaac atatttcact cctggcccgc gatctacaag
      361 ttgctaccta agagacactg ttacagtagg ttttgtggcg agaatctgat gaaacgccga
      421 ttcgtagatg ggccacagat aagcacagat tgatcacaga ttcgaagaaa cgagaatagt
      481 tacgcatata ccctcttctg atctgcgaag atttgcgacg atctgtggct aattctccgg
      541 cgttacttgt tcttgttttg aagctacttt cttggtctcg atttctcgta tgagttttaa
      601 gccttcaacc aacggaggaa actcaagaag cgcgtccttc ttgacgcccc acgtcgtaaa
      661 catgtgccca agcagtttcg caccggcgtg cgtctgacta aacccaatta acgccctagt
      721 cgcgtcaacg tctttccaac cagccggcaa gactcggaag cccttttcag tgaacatcaa
      781 gattgatgga taattgtctc taacttcgta gtgccacgga caaatgatga tgtctttcgg
      841 aatcaaatcg acagcggtag ccgtcccatt aagagcagct tcccattcgc caaaatcgta
      901 cttctttcca tctatcaaac ggtcgcccca catcaacatc tcaacgtgac gcttcttgac
      961 tagatggctg tagatttcgt ttacggcctt cgcaaagagt accccgctgt ctttaccttt
     1021 cgttgatggt gactgctcgg agcccaacaa gaagatctca tccatcccaa cgtgaaaagc
     1081 atcggcatta aatgcatcga tgatttcgtc catcaactga aaaacgatcc gccagacttc
     1141 cgggttgagg gggtcccatt cacggcaata gataccttcg ttattcggaa aggctccggg
     1201 cgtcacatcg aagttcggat aggaagtaag tagcggaaaa gtttcagcct tccacgactg
     1261 atggccgagc gattggaact gcggaatgag tcggatgtta agcttcttac agagagtcgc
     1321 aaatcgtctt gcgccgtctc gagtgatcgg attcgtccct cgtcgcagtt cggggtgaga
     1381 cttgaatgca aagttgtagt caacctcgag aattatgaag ttgattccct gtttggccag
     1441 ggttggcaga tcctt
//
LOCUS       DATCGC010000789         1087 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_15880, whole genome shotgun sequence.
ACCESSION   DATCGC010000789 DATCGC010000000
VERSION     DATCGC010000789.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1087
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15880"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(74..149)
                     /locus_tag="VIJ87_07675"
     tRNA            complement(74..149)
                     /locus_tag="VIJ87_07675"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(113..115),aa:Trp,seq:cca)
     gene            complement(191..343)
                     /gene="rpmG"
                     /locus_tag="VIJ87_07680"
     CDS             complement(191..343)
                     /gene="rpmG"
                     /locus_tag="VIJ87_07680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005918839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEY5444332.1"
                     /translation="MPRDNIILQCTECKERNYVTTKNKKNTPNRLEFKKFCRRCRCHT
                     MHRENK"
     gene            complement(362..>1087)
                     /locus_tag="VIJ87_07685"
     CDS             complement(362..>1087)
                     /locus_tag="VIJ87_07685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003640798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EF-Tu/IF-2/RF-3 family GTPase"
                     /protein_id="HEY5444333.1"
                     /translation="IRELLSSYEFPGDDIPVVQGSALKALEGDPAWEPKIDELMQAVD
                     DFIPTPARETDKPFLMPVEDIFTIQGRGTVATGRIERGIINVNEPVEIVGIKDTKNSV
                     VTGVEMFKKLLDQGQAGDNVGLLLRGVERKEIERGQVIAKPGSITPHTKFKAEAYVLT
                     KEEGGRHTPFFTGYRPQFYFRTTDVTGVAKLPEGVEMVMPGDNIQMEIELIAPIAMEK
                     GLRFAIREGGRTVGAGTVSEVVE"
BASE COUNT          222 a          312 c          267 g          286 t
ORIGIN      
        1 cgacggtgtc aacagcttct gacactttat attctccctt tcggcaaact tccaacagcc
       61 gaaaaatatt gtctggcagg ggtaccagga ctcgaacccg gacctaaggt tttggagacc
      121 tccatgctaa ccattgacac catacccctg tgcaaacggg gccgacttcg acgtccgccc
      181 caataaagga ctacttgttc tctcggtgca tggtatggca acggcaacgg cggcagaact
      241 tcttgaactc caaccggttg ggggtgttct tcttgttctt cgtcgttacg taattgcgtt
      301 ccttgcactc cgtgcactgt aaaattatgt tatctctggg cattactgct tacctcgtaa
      361 attactcaac cacttctgaa acggtaccgg caccgactgt tcggccgcct tcacggatag
      421 caaagcgaag tcctttttcc attgcgatgg gagcgatcag ttcgatctcc atctggatgt
      481 tgtctccggg catcaccatc tcgacgcctt ctggaagctt tgcaacaccg gtcacatccg
      541 ttgtcctgaa gtagaactgc gggcgatatc cggtaaagaa cggtgtatgt cggccgcctt
      601 cttccttggt caggacatag gcctctgcct tgaacttcgt gtgcggcgtg atcgagcccg
      661 gcttggcaat gacctgtccg cgttcgatct cttttctttc aacacctctt aagagaagtc
      721 cgacgttgtc gccggcctgt ccctggtcca gaagcttctt gaacatctcg acgcctgtca
      781 cgacagagtt cttggtgtcc ttgatgccga cgatctcgac cggctcattg acattgatga
      841 tgcctctctc gatccttccc gtagcaacag ttcctcgtcc ctggatggtg aagatgtctt
      901 cgacaggcat caggaagggc ttgtccgttt cgcgggcagg tgtcggaatg aaatcatcta
      961 ccgcctgcat cagctcatcg atcttcggct cccatgccgg gtcgccttcc agagctttca
     1021 gggctgaacc ctgaactaca gggatgtcat caccggggaa ttcgtaagaa ctcagaagct
     1081 cgcggat
//
LOCUS       DATCGC010000790         1006 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_478934, whole genome shotgun sequence.
ACCESSION   DATCGC010000790 DATCGC010000000
VERSION     DATCGC010000790.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1006)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1006
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_478934"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..945
                     /locus_tag="VIJ87_07690"
     CDS             <1..945
                     /locus_tag="VIJ87_07690"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HEY5444334.1"
                     /translation="GFSMTASLLTRRQFVWKCGTGAVASTVLAKSLAGSSLFLPASTM
                     QFGYASITWNGNDAQAIKDISELGFRGIQLRSNILPEYGSKPEALRALLEQNKLEMVA
                     LSSGGVGIAPNTEADEIAKHVNNAKFVKAVGGRYLQVTDSARPKDRKPEASDFKQLGH
                     VLNEIGKRALDLGVPVGYHNHMASLGEAPDEVDRIMDAADPRYIKLELDIAHYQQGGG
                     DPVRAVEKYHDRLLFLHIKDVESLPSVDARGRSYRFVELGRGRVDLPGVFAALKKVKF
                     NGWAIIELDGVPDPSRTPKECAAISIKYLNEKLGMKVS"
BASE COUNT          242 a          237 c          279 g          248 t
ORIGIN      
        1 gggttttcaa tgactgcttc attgttaacg cgcaggcaat tcgtctggaa gtgtgggact
       61 ggcgcagtag cttcgacagt cctggctaag tcgctcgcgg gttcttcgtt gtttctacct
      121 gccagtacaa tgcaattcgg ctacgcttct atcacctgga acggcaacga cgcacaggca
      181 atcaaggaca tctccgaact cgggtttcgc gggattcaac tgcgcagcaa catccttccc
      241 gaatacggat caaagccgga ggcattgcgt gcgctcctgg aacaaaacaa attagagatg
      301 gtggctttat cgagcggcgg cgtcggcatt gctccgaata ctgaggccga tgaaattgcc
      361 aagcatgtca ataacgcaaa gtttgttaag gccgtgggcg gacggtattt gcaagtgacg
      421 gattcagcgc gcccgaagga tcgaaagcct gaagcatcag acttcaaaca actcggacac
      481 gtcctaaacg aaattggtaa acgagcgctg gatcttggag tcccggttgg ctaccacaat
      541 catatggcga gtttgggtga agctcctgac gaagtggatc gcataatgga cgccgcagat
      601 cctcgttaca tcaaactcga gttggacatt gctcattatc aacaaggtgg tggcgatcca
      661 gttcgtgccg tcgagaagta tcacgatcga ctcctctttc ttcacatcaa ggacgttgag
      721 agtcttccga gtgtcgatgc ccgaggtcgc tcttaccggt ttgttgaatt gggccgagga
      781 cgcgtagatc ttcccggtgt tttcgcagca ttgaaaaagg tgaagtttaa tggctgggca
      841 attatcgaat tggacggtgt gcctgatccg tcgcggacgc caaaggagtg cgctgcgatc
      901 agcatcaagt acttgaacga gaagcttgga atgaaggtta gctaaaacat tgtccgatat
      961 gctctgagtg tccgatatgc tttagcttgt cgttgattct ttcagg
//
LOCUS       DATCGC010000791         1378 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_80659, whole genome shotgun sequence.
ACCESSION   DATCGC010000791 DATCGC010000000
VERSION     DATCGC010000791.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1378)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1378)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1378
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80659"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            221..841
                     /locus_tag="VIJ87_07695"
     CDS             221..841
                     /locus_tag="VIJ87_07695"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY5444335.1"
                     /translation="MSIVASPINSVLSSDLAKVNDCDLVTSAISGLDGSFEELVRRYQ
                     RPISAYVYRMVGNYESALDLTQEIFIKVYNSLRRYRPEFKFSTWIYKIAHNSAVDHLR
                     RTSTREQSLISGTDGDSFELPLESSRLTPEQESEQKERRIEIESVVRTLPSNYRELII
                     LRHSQDLTYEEIVEVTGLPLGTVKNRLFRAREMMRQQFLEKGITGI"
     gene            851..>1378
                     /locus_tag="VIJ87_07700"
     CDS             851..>1378
                     /locus_tag="VIJ87_07700"
                     /inference="COORDINATES: protein motif:HMM:NF024881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HEY5444336.1"
                     /translation="MAAISENLCERSLIPAYVDGELEADAQARFAEHLNNCLGCRDEL
                     RFHQQFMCELDAALVEDKEVLMPADFSRMVAARAVSDMSGVRSATEKRRALAFCLILA
                     GAGFALIGATTRQLTFSMISRLAAKVLGVLEFAWSTLYATAASIAVVSRVVSRKLVVE
                     TGNLGLVLVLLAFAVL"
BASE COUNT          315 a          357 c          367 g          339 t
ORIGIN      
        1 ttgaccaaag accgggcgcg ggagatcgtg aatgaaacga ccggagggac ccttgagccc
       61 cttgatgccg aagacttggg cttgttactc ccgggccgcg aactcagttt tgacgcgatt
      121 gccgctccag ccgggctcgc aaccctctct ttttaaaggt ttccacacgg ctccatccgt
      181 tgaaacaatt ccgttttgta gaacgtaaca cccttgcatc atgagcattg ttgcgtctcc
      241 aatcaattcc gttctctcct cggatcttgc caaggtaaac gactgtgacc ttgtgaccag
      301 cgctatttcc gggcttgacg ggagctttga agaactcgtt cgccggtatc aacgtccgat
      361 atcggcttac gtctaccgga tggtaggcaa ttacgagtcg gctctcgacc taacgcagga
      421 gattttcatc aaggtctaca actccttacg tcgctaccgc cccgaattca agttctcaac
      481 ctggatctac aagatcgccc acaactcagc cgtcgatcac cttcgtcgaa cttcgacgcg
      541 ggaacagtca ctgatcagcg gcaccgatgg cgacagtttc gaactgccac tggaaagcag
      601 ccggcttact ccggagcagg aaagcgaaca gaaggagcgt cgcatcgaga tagaaagtgt
      661 agtcagaact cttccctcaa actaccgcga gctcattatt cttcgtcact cacaggacct
      721 cacttacgaa gagatagtcg aagtcacagg actaccgctg ggaaccgtta agaatcggct
      781 ctttagagcg cgcgaaatga tgcgacaaca gtttttggaa aagggaatta ctggtatctg
      841 attttctgag atggcagcga tcagcgaaaa tctctgtgag cgaagtctga ttcccgccta
      901 cgttgatggc gagttggaag ctgacgcgca agcgcgtttt gcggaacacc tcaacaactg
      961 tttaggctgc cgggacgagt tgcgatttca tcagcagttt atgtgcgagc ttgatgcggc
     1021 gcttgtcgag gacaaggaag tgttgatgcc cgctgacttc tctcgaatgg ttgccgccag
     1081 ggctgtgagt gacatgagtg gagttcgttc cgcgacagag aaacgaagag cgctggcttt
     1141 ctgtttaata cttgccggag ccggtttcgc tcttatcggt gcaaccactc ggcaattaac
     1201 tttcagcatg atcagcaggc tcgctgccaa agttctcgga gtgctcgagt ttgcgtggag
     1261 tactctatac gccacggcgg cgagcattgc tgtagtttcc agggtcgtta gtagaaaact
     1321 tgttgtcgag actggaaacc tgggattagt tttagtgctt cttgcgtttg cggtcctg
//
LOCUS       DATCGC010000792         1213 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_478974, whole genome shotgun sequence.
ACCESSION   DATCGC010000792 DATCGC010000000
VERSION     DATCGC010000792.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1213)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1213)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1213
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_478974"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1213
                     /locus_tag="VIJ87_07705"
     CDS             <1..>1213
                     /locus_tag="VIJ87_07705"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CHAT domain-containing protein"
                     /protein_id="HEY5444337.1"
                     /translation="NEATVSTNVGHAYYEMGEFEKALSFYEEPLRYWQTTTNKLNEAI
                     THSHIAAALRELGRLDEAKIHIEQSIALFEFIREHAGSADSQSSFVANFFEFYDLYVD
                     VLMRLHAANPQSGNDSTALAFTEKVKLRSLVALLAQARVDLGQGNDVALLERERKINE
                     RITAQLDDLAKLLKGRFTSKQKSAAERELDALKSELGQVRAQIAARNSRYESLTAPQP
                     LGIKEIQQVLDDKTILLEYELGKKRSYLWAITPDKLLSYELPSRETIEAQARHVYELL
                     TARQPDPKLTVGRQRAREVAADVQYKTDARVLSKMLLEPVAAQLGTKRLLIVADGALQ
                     YLPFAVLPSPTETTGDPRPLILEHEIVNLPSASVLAALRRDLFDRKPAPKTIAVLADP
                     VFEVNDARVKLS"
BASE COUNT          308 a          316 c          315 g          274 t
ORIGIN      
        1 caacgaagca acagtctcga ccaacgtcgg ccacgcttat tacgagatgg gcgagtttga
       61 gaaggccctc agcttttacg aagagcctct gcgatactgg caaaccacaa ccaacaaact
      121 aaacgaagcc atcacccata gccacattgc cgcggcactt cgtgaattgg gacgtctcga
      181 cgaagcgaag atccatattg aacagtctat tgctctcttt gaattcattc gtgagcatgc
      241 tggaagtgct gattcccagt cgtccttcgt agcgaacttt ttcgagtttt atgaccttta
      301 tgttgatgta ctgatgcgtc ttcacgcggc aaatcctcaa tcaggaaatg attcgaccgc
      361 tctggctttt accgagaaag ttaagctccg cagtctcgta gctcttctgg cgcaggcaag
      421 agttgatttg ggacagggga acgatgttgc gctacttgag cgagagagaa agatcaacga
      481 acgcatcacc gcgcagctcg atgacctggc aaaactcctg aagggcagat ttacaagtaa
      541 gcaaaaaagc gcagccgagc gtgagctgga cgcactcaag agcgaactgg gtcaagtgcg
      601 cgctcaaatc gctgctcgaa actcgcgtta tgagtctctc accgctccgc aaccactcgg
      661 cattaaagag attcaacagg tgctcgatga caaaacaatt ttgttggaat atgagttggg
      721 aaaaaagcga agttacctgt gggcaatcac gcccgacaaa ctcttaagtt atgaattgcc
      781 ttccagggag acgatcgaag cgcaggcgcg tcatgtctac gagttgctca cggcacgaca
      841 gcccgacccc aaattgacag ttggtcgaca gcgcgcgcgc gaagttgcag cggacgtgca
      901 gtataagact gatgcgcgcg ttcttagcaa aatgctgctt gagccggtgg ccgcgcaatt
      961 aggtactaag cgcttactta tcgttgctga tggcgcgttg caatacctgc cgttcgctgt
     1021 cctgccatcg ccgacagaga ctacaggtga tcccagacct ttgattctcg aacatgagat
     1081 cgtgaatttg ccttcggcct cagtgctcgc tgcgttgcga cgcgacctgt ttgatcgaaa
     1141 gccggcgccc aaaacaatcg ctgtcttagc cgacccggtt tttgaggtga acgatgcgcg
     1201 cgtcaagtta agc
//
LOCUS       DATCGC010000793         1218 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_410021, whole genome shotgun sequence.
ACCESSION   DATCGC010000793 DATCGC010000000
VERSION     DATCGC010000793.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1218)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1218)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1218
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_410021"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..267
                     /locus_tag="VIJ87_07710"
     CDS             <1..267
                     /locus_tag="VIJ87_07710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444338.1"
                     /translation="ARYLSVFARAGCKDVAMPYDITKISHLADELESSWFRMLLLADE
                     KVKDGKPKLRTRLRGLLFANIRSEILAAGSGTRIPEFTQTTKQR"
     gene            305..>1218
                     /locus_tag="VIJ87_07715"
     CDS             305..>1218
                     /locus_tag="VIJ87_07715"
                     /inference="COORDINATES: protein motif:HMM:NF012345.4"
                     /note="Members of this family of hydrolases with an active
                     site Cys residue belong to MEROPS family C26; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEY5444339.1"
                     /translation="MTQELIELSPTEHAQAEVVGALPFPFNQQTYCRYEPIEQRIDEA
                     RVLVVDNLLRDERDLSPVAIREWGSALAVQLKRERLIAGMAIENILNNIARLVKRPIT
                     EVAHLSELAEAASKFNPEAIVLSGTLRDFDYYQQPMLDGFASFIQKTKIPVLAICGGH
                     QLVGLSFGARVVTLDKLEQHEQREDRPHEYQYRFIRITSPSDPIFAGINTVDDDVIPG
                     TSQQARILRVWQNHGLQLDRVPKGFELLATSYLCRNQMMVKRSEGQLIYAVQFHLEKS
                     FEDWNKSRTRWEHPNDSRDGRLLFENFLT"
BASE COUNT          290 a          308 c          320 g          300 t
ORIGIN      
        1 gccaggtatt tgtcggtctt tgcgcgcgct ggctgtaagg atgtcgccat gccgtacgac
       61 attactaaga tttcgcattt ggccgacgaa ctcgaatcgt cttggttcag gatgctgctc
      121 ctggccgacg agaaggtgaa agacggtaaa ccaaaacttc gaactcggct tcgtggcctg
      181 ctgtttgcta atattcgctc ggagattttg gctgctggct cgggaacacg aattccggaa
      241 tttacgcaga caacaaagca gcgctaactt gattctgata ccgattggac atttactagc
      301 atagatgacc caggaactaa ttgaactttc ccccactgag cacgcccagg ccgaggttgt
      361 tggcgcactt ccttttcctt tcaaccagca gacctattgc cggtatgagc ctatcgagca
      421 gcgtattgac gaagctcgag tactcgtagt tgacaatctt cttcgtgatg agcgtgacct
      481 gtcgccagtc gctattcgag aatggggctc cgccttagca gtccagctga aacgcgaacg
      541 tttgatcgcg gggatggcaa tcgagaacat cctgaataac attgcccgat tggtgaagag
      601 accaattacg gaagtggcgc acttatcaga attggccgag gcagcgtcga agttcaatcc
      661 tgaagcgatt gttctgagtg gcacgttgcg cgattttgat tactaccaac agccgatgct
      721 cgatggattc gcgtcgttta ttcagaaaac caagattcca gtgcttgcaa tctgtggagg
      781 acatcaactc gttgggctga gctttggcgc cagggtcgtc accttagaca agctcgagca
      841 gcacgaacaa cgcgaggatc gtccgcacga gtatcagtat cgattcattc gtatcacgtc
      901 accatctgat ccgatttttg caggaatcaa tacagtcgac gacgacgtca ttcccgggac
      961 ttctcagcag gcgcggatac ttcgtgtctg gcagaaccac ggtcttcaac tcgaccgtgt
     1021 accaaaagga ttcgagttgc tcgccacttc gtatctgtgt cgcaaccaga tgatggtgaa
     1081 gcgcagtgaa ggacagctga tctatgccgt tcagtttcac ctcgagaaat cgtttgagga
     1141 ttggaacaag agccgtactc gttgggaaca cccaaacgat tcgcgggacg gtcggctgct
     1201 tttcgagaac ttcctgac
//
LOCUS       DATCGC010000794         1415 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_479034, whole genome shotgun sequence.
ACCESSION   DATCGC010000794 DATCGC010000000
VERSION     DATCGC010000794.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1415)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1415)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1415
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_479034"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(122..652)
                     /locus_tag="VIJ87_07720"
     CDS             complement(122..652)
                     /locus_tag="VIJ87_07720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444340.1"
                     /translation="MQKLKAHIARLKEELGSIQAMAATLAIELDGVGPFELPLLTEFD
                     WLVPTEQNGFKVGFRSESGNRIYAGISHRAIAQLVNDRRAFPLSQETLSPLTLIDLTK
                     PADAHILPVLARLEGHFERGQNEWILVFSSEDGRKILLPLSSDAYEQLLTQSKATLLS
                     HQEENWLKEIIPRLVT"
     gene            complement(1168..>1415)
                     /locus_tag="VIJ87_07725"
     CDS             complement(1168..>1415)
                     /locus_tag="VIJ87_07725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444341.1"
                     /translation="DRRNNMRTVPDTELQATLLREIDVSEKKLKVEENLRTADMRSKL
                     LIDSAARKDIEAYRNRPVVAEVAHFAMMPADNVRKQI"
BASE COUNT          319 a          384 c          350 g          362 t
ORIGIN      
        1 aaggttcgtg tcccctttct tgctttaatt gttacgggtt ttttcgcatg gcactccgcg
       61 cggccaggcc ttggtcatgt ctcgcgccga cacaattggc tagaatagaa aacctgagtg
      121 atcaggtgac gaggcgggga atgatttcct ttaaccagtt ttcttcctga tgcgacagga
      181 gcgtggcctt agactgcgtg agaagttgct cgtaggcatc cgatgaaagt ggcagcaaaa
      241 tctttcgtcc gtcttcggat gagaagacta aaatccactc gttttgaccg cgttcaaaat
      301 gtccctccag gcgagcgagg accggcagta tgtgcgcatc agccggtttt gtcagatcaa
      361 tcaaagtcaa tggagacagc gtctcttgcg ataacgggaa cgcgcgacga tcgttgacga
      421 gttgtgcgat ggcccggtgc gagatgcctg cataaattcg attcccactc tccgatcgaa
      481 aaccaacttt gaacccgttt tgctcggtcg gaactaacca gtcgaactca gttaataaag
      541 gcaactcgaa gggtccaacc ccatcgagtt caatcgccaa cgtcgcagcc atcgcctgga
      601 tggatcccag ttcttccttc aacctagcaa tgtgagcttt tagtttttgc attttcattt
      661 ctcgccttgc tctcactttc gcaaggaaat aagcaactaa gccgacgaga attgaaatac
      721 tgaacgcgcc aagcagagga aagagaagat gtgtccaggt ggaccacaga actatttgga
      781 ctgaatccag caaatccatc gtggagcgga ctccaaatcg tcaggcttgg gacgagacgg
      841 tacccggcct acgaggatgc gacgctgaga tacggtgaaa gtcgataaag aaaagtgggc
      901 gatttttcga cattgaagac tcttctgagc ggactggaat tcatgcgaca gggctgctct
      961 ttggctactg cttcgacatt ctgacatccg cacccattct ttaactccct cctacgccgc
     1021 ttccctgcat gcctcatgct cctcgtacgc ccgccagtcc ggcacatagc cgcagttgcg
     1081 gcagtagaac tgctcgggaa tgtggtcctg acatcggggg caactacacc catcttcctt
     1141 ttcggctttc attgtctcgc cctcgtttca aatttgcttg cggacgttat cggcaggcat
     1201 cattgcgaag tgggcaacct cggcaaccac aggacggttc ctataggcct cgatatcctt
     1261 ccgcgcggcg ctatctatga gtaacttgct ccgcatatcc gctgtcctga gattctcttc
     1321 gaccttcagc ttcttttcac tcacgtcgat ctctctcaaa agcgtcgctt ggagttcagt
     1381 gtcaggcact gtccgcatat tgtttctcct gtcgg
//
LOCUS       DATCGC010000795         1171 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_80716, whole genome shotgun sequence.
ACCESSION   DATCGC010000795 DATCGC010000000
VERSION     DATCGC010000795.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1171)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1171)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1171
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80716"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1027)
                     /locus_tag="VIJ87_07730"
     CDS             complement(<1..1027)
                     /locus_tag="VIJ87_07730"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5444342.1"
                     /translation="MRLDDVKESAYMALDTLRTNKLRSSLTILGVSVGVLTVIFMVSI
                     IQGLNKAFADQIESLGSNTIFISKFDPSFGRPPGPEEIHRKDLGMEDVEALRREAPSI
                     AGVSPIHRKLSSTVRYQDKQTDTPILLGVTPYYEFVHTQYVANGRFINEIDMQDRSNV
                     VIIGVDVKTALFPYEDPVDKDVRINGNPYRVIGVMEPLGNFFGQSRDNSIFVPISTFD
                     KYYAEGPFPEVVFFMVVRPQNRAFVKSAMDEITDILRRRRRVPLGAKNDFGVSSQDSL
                     LDVYNQLTGATALVLTSISFVALMIGGIGVMNIMLVSVTERTKEIGVRKAVGATRLDI
                     LSQFLIEA"
BASE COUNT          286 a          296 c          288 g          301 t
ORIGIN      
        1 ctgcttcaat caaaaattga gaaaggatgt cgagcctcgt ggccccaacc gccttgcgaa
       61 caccaatttc ctttgtgcgc tccgtaacag atacgagcat gatgttcatc actccgatcc
      121 caccaatcat caaagcgacg aaggagatcg acgtcaacac gagtgccgtt gccccagtca
      181 actggttgta gacatccagc agcgagtctt gtgatgaaac accgaagtcg tttttggcac
      241 cgagtggcac gcgccgtctg cgtcttagga tgtcagtgat ttcgtccatt gcagatttca
      301 caaatgcacg attctgaggt ctgactacca tgaaaaacac gacttcgggg aatgggcctt
      361 ccgcatagta cttgtcgaac gttgagatgg gaacgaatat ggagttgtcg cgagattgtc
      421 caaagaaatt acccagtggc tccattacgc caatcactcg atacggattg ccgtttattc
      481 taacgtcttt atcaaccgga tcttcgtaag gaaacaaagc ggttttgacg tcgactccaa
      541 tgatcacgac attcgagcga tcctgcatat cgatctcgtt gatgaatcgt ccatttgcga
      601 cgtactgcgt gtgaacgaac tcgtagtaag gagtcacacc gagaagaata ggagtgtccg
      661 tctgtttatc ctggtatctg accgtcgatg aaagcttgcg atgtatcggc gacactcctg
      721 cgatcgatgg cgcttcacgt cgcagcgcct cgacatcttc cattccaagg tccttgcgat
      781 gaatctcctc tggaccaggt ggtcgcccaa aactcgggtc gaacttggaa ataaaaattg
      841 tgttggagcc cagtgattcg atttgatcgg caaatgcttt gttaagtccc tggatgatcg
      901 acaccataaa gatgaccgtg aggacaccga cgctgacacc gagaatggtc agcgacgaac
      961 gcagcttgtt agtgcgcaat gtatcaagcg ccatgtaagc ggattctttg acgtcgtcta
     1021 gtcgcatgat gttagttatt gtcgatttcc gaatgtccga tatgctttag cttgtcgttg
     1081 actttgcatg aggacgcctt actccgccct cagtgcttcg atcggatcca gtttcgccgc
     1141 acgccatgcg ggccatagtc cacttatgat t
//
LOCUS       DATCGC010000796         2650 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_144747, whole genome shotgun sequence.
ACCESSION   DATCGC010000796 DATCGC010000000
VERSION     DATCGC010000796.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2650)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2650)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2650
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144747"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            147..1079
                     /locus_tag="VIJ87_07735"
     CDS             147..1079
                     /locus_tag="VIJ87_07735"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine dehydratase"
                     /protein_id="HEY5444343.1"
                     /translation="MSAVRDAREAIAGSAIRTPLLRLNLLDSPFEIYLKLENLQPIGS
                     FKIRGAANAISAMSAEQLKQGVVTASAGNMAQGVAWMARTLKIPCTVIAPATAPEIKI
                     KAIERLGGRVIKVSFEDWWKAFEQRAHPGVKGTFIHAFDDPNVMAGNGTIALEILEDL
                     PEPDAIVIPWGGGGLTCGIASVLRELRPACKVFAAEVATAAPLSASIAAGVPTSVEYE
                     HSFVDGIGAKAVFPQMFERAKKLIDDVLVAQLGEVAAAVKLLLDRNHVVAEGAGATPV
                     ACAVSGKAGKGKVVCVVSGGNIDAAKLAELLTGK"
     gene            1340..1684
                     /locus_tag="VIJ87_07740"
     CDS             1340..1684
                     /locus_tag="VIJ87_07740"
                     /inference="COORDINATES: protein motif:HMM:NF013921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEY5444344.1"
                     /translation="MGGIIREVGGTSLGINGIEDHVHVVTKLRPDKALSDVLRVLKCN
                     ASGWMHDVFPSLAEFSWQRGYAAFTVSQSNVEEVSRYVAGQKEHHKKISFRDEFIGFL
                     KENYIEYDERFV"
     gene            1998..>2650
                     /locus_tag="VIJ87_07745"
     CDS             1998..>2650
                     /locus_tag="VIJ87_07745"
                     /inference="COORDINATES: protein motif:HMM:NF019575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEY5444345.1"
                     /translation="MLQPSLFFPARPSLIHKRERGFTLIELLVVIAIIAILIGLLLPA
                     VQKVREAANRSQCINNLRIIAVAEAQFHQQQGVFTNSLESLGLNNLFPNNQAGGYDFV
                     INADALSFVADGKPAAPGITGNTDCHANNLNHLWCSPNPDADAGRERMFANIHARSAQ
                     VIGSLLAQMPEALGRLIPTLQSDRVVPDAFSRLDTNGDGELKVREIFGPHADNTGALG
                     "
BASE COUNT          634 a          684 c          702 g          630 t
ORIGIN      
        1 gcgacgaata tatctcaggt gtcttagaaa aaagtaggat gtgatttgat cgcatggcta
       61 taccctcccc caacgctaga ccttacttgg aaccaacatg ggaagtcggt gtaatctaaa
      121 ccaacatgtc aacaacttca tctcccttgt ccgcagttcg tgacgcacgc gaagcgattg
      181 caggttcagc tattcgcacg ccacttcttc gactcaatct tctcgattca ccttttgaga
      241 tctaccttaa gctcgaaaat ctacaaccaa tcggttcctt caagattcgt ggcgctgcaa
      301 atgcgatatc ggcaatgtcc gctgagcaac tcaagcaggg agttgtcact gcgtcggccg
      361 gaaacatggc gcagggagtt gcgtggatgg ccaggactct caaaattccc tgcacggtaa
      421 tcgcgccagc cactgcgccg gagatcaaga tcaaagcaat cgaacgactc ggtggacggg
      481 tcatcaaggt gtcgtttgag gattggtgga aggcttttga acaacgcgct catcctggtg
      541 tcaaaggaac attcatccat gcgtttgacg acccgaatgt gatggcgggt aacggcacta
      601 tcgcgcttga gatcctcgaa gacttgccag aaccggatgc gatcgtaatt ccatggggag
      661 gcggtggact tacctgcggc atcgcatcgg tgctacgtga actacgtccg gcgtgtaagg
      721 tctttgctgc ggaagtggca acggcggcgc cactgtctgc ttcgattgca gccggagttc
      781 cgacgtcggt tgagtatgaa cattcgtttg tagatggtat cggcgctaag gctgtgtttc
      841 cgcaaatgtt cgaacgagct aagaagttaa tcgacgacgt actcgtcgcc cagttgggtg
      901 aagtagcggc tgcggtaaag ttgcttctcg atcggaacca tgtagttgcg gaaggggcgg
      961 gagcgacacc agttgcgtgc gccgtgtctg gaaaagcggg aaagggtaag gttgtttgcg
     1021 tggtatcagg tggaaacatc gacgcggcga aactggcaga gttgctgaca ggaaagtgag
     1081 cccgcgaagt gggcgatgag cgtagagcct agggcgtaag ccctaggaaa gccacgcaaa
     1141 agtttatcga gcccgcgaag cgggcgacag ccgccacctc aaggcgtata atcacgtcta
     1201 gttttatcca ttctcacaac aaaggaacct cactcgatgt ctcaatcatt tacgaatctt
     1261 ctgtaccatc tcatcttctc aaccaaggat cgtcgaccga tcattacgct cgattatcaa
     1321 cctcgcctct cacgattaca tcggcggaat aatccgcgag gttggtggaa catcccttgg
     1381 aataaacggg atcgaggacc acgttcacgt cgtcacgaaa ctacgccctg ataaagccct
     1441 atccgatgtg ttacgagtgt tgaaatgtaa cgcgagtgga tggatgcacg acgtgtttcc
     1501 aagtctggca gagttttcgt ggcaacgagg ttacgccgcg ttcacggtga gccaatcaaa
     1561 cgtggaagag gtaagccgtt atgtagcggg gcaaaaagag catcataaga agatctcttt
     1621 tcgagatgag ttcattgggt tcttgaaaga aaattacatc gaatacgacg aacgatttgt
     1681 ttgattcgtg cggctgtcgc ccgcttcgcg ggcttggggg attcattcgc aacgttcctg
     1741 gggctgacgc cccaggcttt acgcttgtcg cccgcttcgc gggctttgaa ttgttccagc
     1801 cgtgggcact gctctagacc aactctcctg tcttcctgct attaaaacct tgcgctggat
     1861 tggatttggc gttagtttcc cccctgccta atcccgacca aacagcgcct cgataacgac
     1921 gtttcctcca gtacctcaac ctggtgtttg gcttagtcta gtgtgaccgg ccagacccgc
     1981 caaaaaggag acaggcaatg cttcaaccgt cactattctt ccctgctcgg ccttcactga
     2041 ttcataagcg cgagcgaggg ttcacgctga tcgaacttct cgttgtaatc gcgatcattg
     2101 caatcctaat cggactactt ctgcctgcag ttcagaaagt ccgcgaggct gctaaccgca
     2161 gccaatgcat aaacaacctg cgaataattg cggtcgcaga agcgcaattc catcagcagc
     2221 agggagtctt taccaattca ctcgaatcgc tcgggctcaa taatttgttc ccgaataatc
     2281 aggctggtgg atacgacttc gtcattaacg ccgacgctct ttcctttgtt gctgatggga
     2341 aaccggcggc cccgggcatc actggaaaca ctgattgtca tgccaacaat ctcaatcacc
     2401 tttggtgttc accaaatcca gacgccgacg ccggaaggga acgaatgttc gctaacattc
     2461 acgcacgttc tgctcaggtg attggctcac tactggccca aatgcctgaa gccttaggcc
     2521 ggctgatacc aaccttgcag tccgataggg ttgttccaga tgctttcagc cgtctggata
     2581 ccaacggaga tggggagtta aaggtacgag agatctttgg acctcacgca gataacactg
     2641 gagctttggg
//
LOCUS       DATCGC010000797         1262 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_144769, whole genome shotgun sequence.
ACCESSION   DATCGC010000797 DATCGC010000000
VERSION     DATCGC010000797.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1262)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1262)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1262
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144769"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..509
                     /locus_tag="VIJ87_07750"
     CDS             <1..509
                     /locus_tag="VIJ87_07750"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY5444346.1"
                     /translation="RIISMTGLIESTINTVRRISSELRPGVLDDLGLVAAIEWQAQQF
                     QRRTGLKLHWETDLDNAEVSRDGATAVFRIFQEVLTNILRHSRAKNIYVKLFEIDQSL
                     ELEVTDDGRGITDDEQQNTRSLGLLGMKERALLVEGEVSIKGAQGKGTRVLVRIPLSQ
                     GVESETVA"
     gene            502..1125
                     /locus_tag="VIJ87_07755"
     CDS             502..1125
                     /locus_tag="VIJ87_07755"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY5444347.1"
                     /translation="MHRILTIDDHEVVREGVKGLFAAGLAEFGEARSGAEAINLIRDS
                     EWDIAILDISLAGRSGLDVLKEIRQLRPKLPVLMLSMHAEDQYAMRAFKAGASGYISK
                     ASSRDELRQAVLKVIKGGRYISPSMAERMVFDISSSDKPPHEQLSDRELEVLCLIASG
                     RTVGEIATSLSLSDKTISTYRRRILDKMHLSTNAELTHYAIRNHLVE"
BASE COUNT          313 a          316 c          344 g          289 t
ORIGIN      
        1 agcggatcat ttcaatgaca gggctaatcg agtcgacaat caatacagtc cgtcgcattt
       61 cgtcagaact gagaccgggc gttcttgacg acctgggtct tgtcgccgcc atcgaatggc
      121 aagctcaaca gtttcagaga agaactggtt tgaaactcca ttgggaaacg gatctcgaca
      181 atgctgaagt cagccgcgat ggtgcgacgg ctgtctttcg catatttcag gaagtgctga
      241 cgaacattct tcgacactcg cgcgcgaaga atatttatgt aaagctgttc gaaatagacc
      301 aaagccttga gcttgaagtt actgatgatg gacggggcat cactgatgac gagcagcaga
      361 atacgcgctc gttgggtttg ctcggaatga aagaacgagc tttgcttgta gagggcgaag
      421 ttagtattaa aggtgctcaa ggaaagggca ccagggttct ggttagaatt ccgttgagtc
      481 aaggcgtcga atctgagacc gttgcataga atccttacca ttgatgacca tgaagttgtg
      541 cgcgagggcg taaagggtct ctttgctgcg ggcctggcgg agtttggcga agcaaggagc
      601 ggcgcggagg ccattaatct catccgggat agcgagtggg atattgccat cctcgacatt
      661 tctttggccg gacgtagtgg cctcgacgtg ctgaaggaga tcaggcagtt gcggccgaag
      721 ctgccggtgc tgatgcttag catgcacgcg gaagatcagt acgcgatgcg tgcttttaag
      781 gctggagctt cgggctacat tagcaaggcg agctcccgcg acgagttacg ccaggccgtc
      841 ttgaaggtaa taaaaggagg ccgctacatc agcccctcaa tggcggagag aatggttttt
      901 gacatttcct cgtcagacaa accgcctcac gaacaattgt ccgacaggga actcgaagtt
      961 ctgtgcctga ttgcctccgg caggacggtc ggcgagattg ccacttcgct ttcgttgagc
     1021 gacaagacca tcagcaccta ccgtcgacgc attctggaca agatgcacct aagcacgaac
     1081 gccgaactca cccactacgc gattagaaat catctggtcg agtaacgtct ccaatttgta
     1141 gggcaaactc ctacaaatca ccggcccatt taccttacac cctaatcatc aatgccctga
     1201 tatcaccatt gtcgtctgac ctgtattctc cccctcgctt gaaccgataa tcccccggaa
     1261 ag
//
LOCUS       DATCGC010000798         1353 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_80738, whole genome shotgun sequence.
ACCESSION   DATCGC010000798 DATCGC010000000
VERSION     DATCGC010000798.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1353)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1353)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1353
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80738"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1335)
                     /locus_tag="VIJ87_07760"
     CDS             complement(<1..1335)
                     /locus_tag="VIJ87_07760"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY5444348.1"
                     /translation="MPTPAPRVSLRERKVTLAAISVFLLCLLVAASIVVYQQHQPAVE
                     KINYSQLYALSGLSGVTALTVEGDTLTLTKQDGTLVEAVVSGEAAQHEIIELFRKNNV
                     PVEFRVLRPGLIITILNWGLPLLCLGFVGFAGWKVYASINGGGSFDLENQSGKQTVGF
                     GDVAGVDEAKAELTETIEFLKDPIKFGRLGGRVPRGILLYGPPGTGKTLLARAAAKEA
                     GVPFLAASGSSFQEKFAGLGAARVRHLFAKGRKLSPCIIFIDEVDALGRQRGRGGDSA
                     SADQDQTLNQLLVEMDGFDQSSSIVVIASTNRPDILDKALTRPGRFDREIAVNLADAN
                     GREAILKVHARNLTLEADIDLTWIARGTPGFSGAELANLMNEAAIAATRDGSEAIGRK
                     HIEYARDRILMGAERHGFMMDEDERFATAVHEAGHVAVGLAVENGDPIHKVSI"
BASE COUNT          334 a          381 c          330 g          308 t
ORIGIN      
        1 aatcgaaact ttatggatcg gatcgccatt ctctacggcg agtcccacgg caacgtgtcc
       61 agcctcgtga accgcggtag cgaaacgctc atcctcgtcc atcatgaagc catgacgctc
      121 agcgcccatg aggattcgat ctcgcgcata ctcgatgtgt ttacgtccga tcgcttctga
      181 tccatctcgc gtggccgcaa tcgccgcttc attcatcaag ttcgccaact cggccccgga
      241 gaagcccgga gtgcctcgag caatccatgt gagatcaatg tccgcttcta acgtcaagtt
      301 gcgagcatga accttgagga tcgcttctcg tccatttgcg tcggcaaggt tcaccgcaat
      361 ttcacggtcg aaacgaccag gtcgggttaa tgccttatcg agaatgtctg ggcgattcgt
      421 tgaggcaatt acaactatcg agctagattg atcgaagccg tccatctcta cgagcaattg
      481 attcaacgtt tgatcctggt ccgccgaggc agaatcgcca ccgcgtccac gctgacgacc
      541 cagcgcatca acttcatcga tgaagattat gcagggtgaa agttttcgtc ctttagcgaa
      601 caggtgtcga acacgagctg ctcccaaacc ggcaaacttc tcctgaaaac tcgacccgga
      661 cgcagccaag aacgggacac cagcttcttt agctgcagcg cgcgccagca aggtcttgcc
      721 tgtgcccgga ggtccgtaaa gtaggatacc gcggggaact ctgccgccga ggcgaccgaa
      781 ctttataggg tctttcaaaa actcaatcgt ttcggtaagt tcagcctttg cttcgtcaac
      841 acctgccacg tctccaaacc caaccgtctg tttgccactc tggttttcaa gatcgaatga
      901 gccgccgccg ttaatgctgg cgtaaacttt ccagcccgca aaacctacga accccaggca
      961 taacagaggc agaccccagt tcaagatcgt tatgatcaac ccgggtcgaa gaacccgaaa
     1021 ttcgaccggg acattattct ttcgaaacag ctcaataatt tcatgttgcg ctgcttcgcc
     1081 gctgacaaca gcctcgacaa gtgtgccgtc ctgctttgtt aaggtgagag tgtcgccttc
     1141 gactgttaat gcggtgacgc cacttaaacc tgatagcgcg tacagctggg aatagttgat
     1201 cttctcaacg gcaggttgat gttgttgata aacaactatt gaagcagcca cgagaagaca
     1261 caataagaaa actgatatgg cagccagggt tacttttcgt tcgcgaagag aaactcgcgg
     1321 tgcgggggta ggcatgaaac aaaacctcca aat
//
LOCUS       DATCGC010000799         1468 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_343715, whole genome shotgun sequence.
ACCESSION   DATCGC010000799 DATCGC010000000
VERSION     DATCGC010000799.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1468)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1468)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1468
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_343715"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..400
                     /locus_tag="VIJ87_07765"
     CDS             <1..400
                     /locus_tag="VIJ87_07765"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY5444349.1"
                     /translation="PFAPETTKEEARAIWMSPQVQPYVACLDEQIVGSYFIRANQPGL
                     GSHVANAGYMVKPDFHGKGIGRAMCEHSLAEARGAGYLAMQFNIVVSTNESAIALWKK
                     MGFSIVGTLPRVFRHQELGLVDAFVMHRFL"
     gene            570..1427
                     /locus_tag="VIJ87_07770"
     CDS             570..1427
                     /locus_tag="VIJ87_07770"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY5444350.1"
                     /translation="MNTCSFQTALDVWNEGFQGYFVDLTLSLDKFLARVTSECLSPEV
                     SFIAFVAEKPVGFLLNGIRTSGATKFAWNGGTGVIPSYRGKGIGRVLVNASIDLYEAH
                     GVEVATLEALRDNKSAITLYSNCGYAIVEELTFLDSGDSVPSFDLKPGYTVRQVSLSS
                     VGALSFYPDLPAWQTQWQSLLSSNGEAIIVSDDSGGAVGYALYKKRYDADGMLANVAL
                     CQCEVAPDRDDAAHIAAQALQRVFFSEPGSYRRSTHNLRKSNQLVIRMLEDAGFTTFI
                     EQVHMIKRM"
BASE COUNT          342 a          367 c          390 g          369 t
ORIGIN      
        1 cccattcgct cctgaaacaa cgaaggaaga ggcccgagcc atctggatgt ctcctcaagt
       61 gcagccttat gtcgcctgtc tcgatgagca aatcgtcggc agttatttca taagagcgaa
      121 tcaaccgggt cttggttcac acgtcgcaaa cgccggctac atggtgaagc ctgacttcca
      181 cggcaaaggg atcggacgag caatgtgtga acactcgttg gccgaagcac gaggcgcagg
      241 ctatctcgcc atgcaattca acatcgtggt gagtactaac gaatcggcaa tcgcgctttg
      301 gaagaagatg ggattctcaa ttgtaggaac gttgccgcga gtctttcgtc accaagaact
      361 gggattagtc gacgcgtttg tgatgcatcg gtttttgtaa aagacagcga ggtcagtacc
      421 acaccgcggt agcctgtggc tctggatttg gtcttgtacg tcgagccaca cgctaccgcg
      481 ctgtggtact gactacatcg tcacttgact gcacagttgc aacatagact ttactcatga
      541 agaccttagc taacgttgaa ctcaagccca tgaacacttg ttcgtttcaa acggctctcg
      601 atgtttggaa cgaaggtttt caggggtact tcgttgacct gactttgtcc ctcgacaagt
      661 ttctggctcg agtaacttcc gaatgtttat ctcccgaggt gtcatttatt gccttcgttg
      721 ctgaaaaacc cgttggcttc ttgcttaacg gcatcaggac aagcggggcg acgaaatttg
      781 cgtggaatgg cggcaccggt gttattccat cttatcgtgg aaaaggaatc ggccgagtac
      841 tcgtgaatgc gtcgattgac ctttatgaag cacacggtgt tgaagttgcg acactcgaag
      901 ccctgcgtga caacaaaagc gcgatcactc tttactcaaa ctgcggctat gcgattgttg
      961 aagaactgac atttcttgat tcgggagatt ctgtaccttc attcgatttg aaacctggtt
     1021 acaccgtacg acaagtgtcg ctctccagcg ttggcgcgct aagtttttat cccgacttac
     1081 cagcctggca gactcagtgg caaagtttgc tctccagtaa tggagaggca attattgttt
     1141 cggacgactc aggcggcgct gttggctacg cgctttacaa aaagcgctac gatgcagatg
     1201 gcatgcttgc caacgtcgcg ttgtgccaat gtgaggtagc acccgaccgc gacgacgcgg
     1261 cgcacatcgc ggctcaggca ctgcagcgag tgtttttctc ggaaccaggt tcgtaccgca
     1321 ggtcgacaca caacctcagg aagtcaaacc agttagtcat taggatgttg gaggatgcgg
     1381 ggtttacgac tttcatcgag caagtgcata tgatcaagag gatgtgaatt tcggacgcgc
     1441 tcttctggga ccgcaggcgt cctcgcct
//
LOCUS       DATCGC010000800         1287 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_410120, whole genome shotgun sequence.
ACCESSION   DATCGC010000800 DATCGC010000000
VERSION     DATCGC010000800.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1287)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1287)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1287
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_410120"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..206
                     /locus_tag="VIJ87_07775"
     CDS             <1..206
                     /locus_tag="VIJ87_07775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444351.1"
                     /translation="RSAPSEFVTFGFVVSNSSLKCSALPFPISDVSLPAVDLAKQAAI
                     NHRTTAVVTQSGALVAQLVPALS"
     gene            complement(588..1028)
                     /locus_tag="VIJ87_07780"
     CDS             complement(588..1028)
                     /locus_tag="VIJ87_07780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444352.1"
                     /translation="MKQPLMKTKIIGKILLGLGLMFVLVGAITQVHGDSPAISIVTIN
                     STGDVPRGKIGSFVLEMKPPVTFGGAYVNFSVSGAAVPGVDYVPLVSPIYVGSSGYGV
                     ILIETLPDRRGSSFRRGYDVVVTLEHGLGYALGEPKSAKMTIKP"
BASE COUNT          282 a          344 c          350 g          311 t
ORIGIN      
        1 caaggtctgc tccctctgaa tttgtaactt tcggctttgt ggtatcgaat tcttcgctta
       61 aatgttctgc gctgccattc cctatttctg acgtttcgct tccggcggtg gacctcgcaa
      121 aacaagccgc cattaaccac cgaacgactg cagttgtaac acaatccggc gcgcttgtgg
      181 cgcaactggt accggcgctg tcgtgacaac ccgctcatgc cgttgttagg acctcgaatc
      241 atttctgctt ctggtttgca ttcgccttct gatagctgtt cgtcttatct gttggtcttc
      301 tttgactcgg ttcttcacac aggtgtactg caggaaatcc cgtgcgaggt tacgcggaaa
      361 gtgtgagagc gttagaccgc ctgctcgcga aggctgtcgg agttgaaccg ttaaagtgtt
      421 gaagctgcaa atcagtagaa acccgccttc gcgatctagc caaagtcagc aagcaccaca
      481 gacacgagtc gggaagccag ggacagaagt aggagcgccg cgccgccccg aaagctctgc
      541 ggggacagcg ctgcgcgccg tttctgccgt ctgtcgaaga cttaaggtca aggcttaatc
      601 gtcattttgg ctgacttggg ttcgcctagc gcgtatccca agccatgttc gagggttacg
      661 acaacgtcgt atcctcgacg gaaggatgat cctctgcgat caggtaaggt ttcgatcagg
      721 attactccgt aaccagagga tcccacgtag atcggggaga caaggggaac gtaatcaact
      781 cctgggacag cggcgccgct gacagagaag tttacgtaag ccccaccgaa cgtgactgga
      841 ggcttcatct cgaggacgaa tgaaccgatt ttcccccggg ggacgtcccc agtgctattg
      901 atagtgacaa tcgagattgc cgggctatcg ccatgcacct gcgtgatcgc gcccaccagc
      961 acgaacatca agccgaggcc aaggaggatc ttgccgatga tttttgtttt cataagaggt
     1021 tgtttcattt tgttaacttc tttcttgttt tggccttccg tgagccttct ttctggagaa
     1081 ctcatttctg gccgttcaca ggtgtactgc aggaaatccc gtgcgaggtt acgcagagag
     1141 ttgcgcgggc attaaaccgc ctgctcagct tgcccgccgt ggtgggcgaa tgccttcgga
     1201 gttgaagcgg aaccgctgat tacgcggatg tcgcggatga gaaccggaac gtcaaaccac
     1261 gaatgaacac gaattcacac gaaccaa
//
LOCUS       DATCGC010000801         1037 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_44452, whole genome shotgun sequence.
ACCESSION   DATCGC010000801 DATCGC010000000
VERSION     DATCGC010000801.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1037)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1037)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1037
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44452"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1037)
                     /locus_tag="VIJ87_07785"
     rRNA            complement(<1..>1037)
                     /locus_tag="VIJ87_07785"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          192 a          346 c          232 g          267 t
ORIGIN      
        1 ggtggctgct tccaagccaa cctcctggtt gtcactgcga ctccacatcc ttttccactt
       61 agtcaccgct taggggcctt agctgatggt ctgggctgtt tccctctcga ctacggagct
      121 tatcccccgc agtctcactg ccacgctctc acttaccggc attcggagtt tggctaacgt
      181 cagtaacctg gtcgggccca tcggctatcc agtgctctac ctccggcaag aaacacgtga
      241 cgctgcacct aaatgcattt cggggagaac cagctatcac gaagtttgat tggcctttca
      301 cccctatcca caggtcatcc ccccagtttt caacctaggt gggttcggtc ctccacgtcg
      361 tcttaccgac gcttcaacct gcccatggat agatcactcc gcttcgggtc ttgatcatgc
      421 tactcaaacg ccctgttcgg actcgctttc gctacggctt ccccacacgg gttaacctcg
      481 caacacaacg caaactcgca ggctcattct tcaaaaggca cgctgtcacc cctgctaggg
      541 aggctccaac ggattgtagg cacacggttt caggtactat ttcactcccc tcccggggta
      601 cttttcacct ttccctcacg gtacttgtcc gctatcggtc actaggtagt atttaggctt
      661 acacagtggt ctgtgcagat tcactccagg tttctcgggc ccggagctac ttgggatccc
      721 cttcgggagg ccacgccatt tcgtctacgg gggtcacacc ctctgtgccg ggcctttcaa
      781 tgcccttcga ctatgacgcg actttctgac tccctgctga ttcggcagaa ccagctgaaa
      841 ggtcccacaa ccccgtgcac gcaacgcctg ccggcttgaa cacgtacacg gtttggcctg
      901 atccgctttc gctcgccact actcacggaa tatctcttcc tgtcggtact gagatgtttc
      961 acttcccgac gttccctcca cgcaccctat atattcaggt gcaggtatca cgacataact
     1021 cgtgctgggt ttcccca
//
LOCUS       DATCGC010000802         1257 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_376856, whole genome shotgun sequence.
ACCESSION   DATCGC010000802 DATCGC010000000
VERSION     DATCGC010000802.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1257)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1257)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1257
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_376856"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(113..754)
                     /locus_tag="VIJ87_07790"
     CDS             complement(113..754)
                     /locus_tag="VIJ87_07790"
                     /inference="COORDINATES: protein motif:HMM:NF024895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HEY5444353.1"
                     /translation="MRRVIFAGLLAVVCLIATSVSVNAQIDEHPAEVGALYTVISLTD
                     FQTRLFPVVGRGSNTVSGLGGRFAYNFNKHIALDAEANFFPEAHLLNEEFGQKMQGFA
                     GIKAGVRKKRVGVFAKARPGVMWFGEFSSRGGCSSTSFGSVCGVSHEKDFAMDIGGVF
                     EFYPADRFILRADIGDTIVRYPSHTFQTLSAPVLVPAATKNNLQISLGVGWRF"
BASE COUNT          318 a          336 c          304 g          299 t
ORIGIN      
        1 gagtgcggtg gcctggcacc gccttggtaa aaacagtcaa tccagaaccc tgatgacaaa
       61 gcggtgccag gccaccgcac tccaaggagt cgcgcttttc tcgcaggact ttctagaacc
      121 gccagccaac tcccaagcta atctgcaggt tattcttcgt ggcagccggc accaatactg
      181 gtgcgctgag ggtctgaaac gtgtggctgg gatagcgaac aatcgtgtca ccaatgtctg
      241 ctctaagaat gaaacgatca gccggataga attcgaaaac accgcctata tccatcgcaa
      301 aatctttttc atgcgacact ccgcatactg aaccaaacga agttgaggag cagccacctc
      361 gcgatgagaa ctcaccgaac cacatcacgc caggtcgtgc ctttgcaaac acgccaacac
      421 gtttcttccg cactccggct ttgatgccag cgaagccctg catcttctgg ccaaactctt
      481 cgttcaataa atgtgcttcg ggaaagaagt ttgcttcagc atcgagcgca atatgcttgt
      541 tgaagttgta tgcgaagcgg cctccaagcc cacttacggt gttactgcca cgacccacaa
      601 cgggaaagag gcgcgtttga aagtcagtca gtgaaatcac tgtatagagc gccccgactt
      661 cggccgggtg ttcgtcgatt tgagcgttaa cactgacgct ggttgcgatg agacacacta
      721 ctgccagcaa tcctgcgaag ataactctgc gcataggacc tcctgagatt ttggttttcg
      781 atcctttacg aaacgagcca aaccaaatga cacgtttagt tgcttagcta cccgagcaac
      841 gtctatgcct tgtctgtttg cgttgaaaac agctcttgag tcaggagagg tgcgtggaaa
      901 atgatttcag ttgaaagata attttgcggt gtccgataag ctttagagtc tcttgcaaaa
      961 gtctgaaatc gtcacgttcg ccgccagagt gcgcgacccc ctctcattct ccccaagctt
     1021 cagcttgggg ttatgctgcc cgcccattac taagaaaccg tttcaacggt ttcgcccagt
     1081 gtgcgaatga atccgacgcc aatgaaacct tgccagggag cttgtttggc tcgaaactcg
     1141 taaaccgtta aaacggttcc acagaattgg gccctactgt aaccctaggc tgaagcctgg
     1201 ggataatgag acttttgcaa gagcctcttt agcttgtcgt gaactaaatt agggatc
//
LOCUS       DATCGC010000803         1859 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_343737, whole genome shotgun sequence.
ACCESSION   DATCGC010000803 DATCGC010000000
VERSION     DATCGC010000803.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1859)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1859)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1859
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_343737"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(90..>1859)
                     /locus_tag="VIJ87_07795"
     CDS             complement(90..>1859)
                     /locus_tag="VIJ87_07795"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HEY5444354.1"
                     /translation="ISYRQTIHAYPSGGGAYIVAKENLGTNAGLVAGASLLVDYVLTV
                     AVSIAAGVAAITSMAQGTKYAWLINHKVLLCLVFITFIALANLRGVRESGALFAAPTY
                     AFLISFLFMIGYGLFSYYMYGGAAPIPGPEEIKIAEGYKLQPLTLFLILGAFSNGCAA
                     LTGIEAISNGVPAFKKPEATNAATTLVVMAALLTTMFLGTSVLAYLYGVHPHESETVI
                     SQFARIVFTGPMAWFYYVVQVATALILVLAANTSFADFPRLGSLLARDRFLPRQFATR
                     GDKLVFSNGIVILAIFASVLVIAFGGDTSRLIPLYAVGVFLSFTLSQSGMVRHWLKER
                     AEVKKNGKRREEDIHYTQSTVVTDGVPDAELEASEQRESTFVSDEVTDRSHWKKSIVV
                     NAVGATATFVVLCVFIATKFIHGAWIVVVVVPLLVVMFRAIHSHYVAVAKQLSTEGLE
                     EIRPIRHTVIVPISGIHRGVVSALEYAKSIAPDHVQAVYVDFDEEATAKLREKWERWG
                     AGINLVVLPSPYRELTKPLLRYITRLERKNHNDVVTVLLPEFVPAKWWQHLLHNQSSL
                     MLKGALLFKEGVIVISVPYHLKG"
BASE COUNT          518 a          478 c          465 g          398 t
ORIGIN      
        1 aggcgaggac gcctgcggtc ccagaagagc acgtccgata ctccaatggg attactaaag
       61 ggtaacgaga acagcgaaaa tatcgcgctc taacctttca agtgatacgg gacactaata
      121 acgatcacac cctccttgaa gagcaacgct cccttcagca tcaacgaact ctgattgtga
      181 agtaggtgct gccaccattt cgccggaacg aattcgggca acaagacagt aaccacatca
      241 ttgtgatttt ttcgttcaag gcgagtgatg taacgcaaca acggctttgt gagttcgcgg
      301 taaggtgatg gcaacacgac taggttgatt cccgcgcccc agcgctccca cttctctcgt
      361 agtttcgcgg tggcctcttc gtcgaaatct acataaacag cttgaacgtg atccggtgca
      421 atcgacttcg catactcaag cgcactaacg acgccacgat gaataccgga aatcggaaca
      481 attacggtgt gccggatcgg acgaatctct tcgaggcctt ccgttgagag ttgtttcgca
      541 acggcaacat agtggctatg aattgcgcga aacatcacta ccaacaacgg aacaactaca
      601 acaacaatcc aagcaccatg gatgaacttg gtagcaatga aaacacaaag cacaacaaag
      661 gtggccgttg ctccgactgc gttaacgaca atcgacttct tccaatgtga tctatccgtt
      721 acttcgtccg aaacgaaagt cgattcacgt tgctcggaag cttcaagctc tgcgtcaggc
      781 actccatctg ttaccacggt gctttgtgtg tagtggatgt cttcctcacg ccgcttaccg
      841 tttttcttta cctccgcgcg ttccttgagc cagtgcctaa ccattcctga ctgagaaaga
      901 gtgaacgaca gaaagacgcc gactgcataa agcgggatca accgacttgt atcaccacca
      961 aaagcaatca caagaacgct ggcaaagatc gcaagaatca caattccatt tgagaaaacg
     1021 agcttgtctc cacgcgtagc aaactgtctt ggtaagaacc gatccctggc gagcaaacta
     1081 ccgagccgag ggaaatccgc aaatgaagtg ttggcagcca aaacgagaat taaagcggtc
     1141 gcgacctgga caacgtaata gaaccaggcc atcgggccag taaacactat tcgagcgaat
     1201 tgagagatga cggtttcgct ttcgtgtgga tggactccat aaaggtaggc gagcacactt
     1261 gtgccgagaa acatcgtggt tagtagcgcg gccattacaa ctaatgttgt tgcggcattg
     1321 gtggcctcgg gtttcttaaa tgccggaaca ccgttggaaa tagcttcaat accggtgagt
     1381 gccgcgcatc cgttagagaa cgcgccaaga atcagaaata gcgttagagg ttgaagcttg
     1441 tagccctcgg caatcttgat ctcctcgggg ccaggaattg gtgctgcccc tccatacatg
     1501 tagtagctga agagtccgta accgatcata aacagaaagc taatcagaaa ggcatacgta
     1561 ggggcggcga agagcgcccc tgattccctc actccgcgca ggttagccaa ggcaatgaaa
     1621 gtaatgaaga ccaggcagag caaaaccttg tgattaatta accaggcgta ttttgtcccc
     1681 tgggccatgg aggtaatcgc agccacgccg gcggcaatcg aaacagcaac tgtgagaacg
     1741 tagtcaacga gtagtgaagc tccagctacg agaccggcgt tggtgccgag gttttccttg
     1801 gcaacaatgt aagccccgcc ccccgatgga taggcatgaa tggtctgtcg atagctgat
//
LOCUS       DATCGC010000804         1155 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_178987, whole genome shotgun sequence.
ACCESSION   DATCGC010000804 DATCGC010000000
VERSION     DATCGC010000804.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1155)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1155)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1155
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_178987"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..538
                     /locus_tag="VIJ87_07800"
     CDS             <1..538
                     /locus_tag="VIJ87_07800"
                     /inference="COORDINATES: protein motif:HMM:NF024399.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF3881 family protein"
                     /protein_id="HEY5444355.1"
                     /translation="PWALTEYDEEGEAVIHGFREGTDCEVLFELQNLTEVGPSGFRAQ
                     ELHIGLCGLAYRARVRRTKTKTRWTPLEKAAPARAAHENDWSLSGQVIAFKPLRNPLT
                     GGELFWIHLDLERIKLEVLVNKRALRGDELKVGASLDAEVWLQGHVLDEHALRSRYEG
                     VDCAYSLGSFWAGLKRRN"
     gene            581..>1155
                     /locus_tag="VIJ87_07805"
     CDS             581..>1155
                     /locus_tag="VIJ87_07805"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEY5444356.1"
                     /translation="MKRALVVALLALTIILAAYFLNSYWTHRYDALITQQAAIYRVDP
                     DLVWSIIYEETYFSPWKVGQAGEIGLMQVTPTVAREWATETGMREFERQMAIDPQSFL
                     RDPEHNIQIGCWYLEKIHEQFRDSPDAEARMVAAYNAGPSRAVEWNKPGEDGRALTAA
                     EFIKRIDIPSTRAYVTSILQRYQQIKGAKSQG"
BASE COUNT          296 a          274 c          323 g          262 t
ORIGIN      
        1 accctgggca ctgactgaat acgacgaaga gggcgaagcc gtgattcatg gttttcgcga
       61 aggcacagat tgtgaagttc tttttgaact gcaaaatctc acagaagtag ggccttcagg
      121 ttttcgcgca caggagttac acatcgggct ttgtggcctc gcctaccgag cgcgcgtcag
      181 gagaactaaa accaagactc gttggacgcc acttgaaaaa gctgcgccgg cgcgggccgc
      241 tcatgaaaat gattggagct tgtcgggtca agtcatcgct ttcaagccgt taagaaatcc
      301 tctcaccggt ggagaactgt tttggattca tctcgatctt gagcgcatca agcttgaagt
      361 gctggttaat aaacgcgcgc ttcgtggcga cgagttgaaa gtaggcgcat cactcgacgc
      421 tgaagtgtgg ctccagggac atgtcctgga tgaacatgca ctgcgctcac gttatgaagg
      481 cgtcgattgc gcctactcgc tcggtagctt ctgggcagga ttgaagagga gaaactagtc
      541 agtgagtcga tgaaggttac tgacgtcttt gccaatctta atgaaacgcg ctctggttgt
      601 tgctctcctg gccctcacga taattctcgc cgcatatttc ctgaacagct attggactca
      661 ccgctatgat gcgctaatta cgcagcaagc ggcgatctac cgagtagatc cagatcttgt
      721 ctggagcata atctacgaag agacctattt cagtccgtgg aaagttggac aggcgggaga
      781 gattggttta atgcaagtca ctccgacagt cgcgcgtgag tgggccacag aaacaggcat
      841 gcgagagttc gagcgacaaa tggctataga ccctcagagt tttttgcgcg accctgaaca
      901 caatattcaa ataggatgtt ggtatctcga gaaaatccac gaacagttcc gggacagtcc
      961 tgatgcggaa gcacgaatgg ttgcggccta taatgccggg ccaagtcgag cggttgaatg
     1021 gaacaaacca ggcgaagacg gaagagcact gacggcagct gagttcatca agcggatcga
     1081 cataccgtcc acgcgcgctt acgtaacttc gattttgcag cgttatcaac agatcaaggg
     1141 agctaagagt caggg
//
LOCUS       DATCGC010000805         1263 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_16161, whole genome shotgun sequence.
ACCESSION   DATCGC010000805 DATCGC010000000
VERSION     DATCGC010000805.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1263)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1263
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16161"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1263)
                     /locus_tag="VIJ87_07810"
     CDS             complement(<1..>1263)
                     /locus_tag="VIJ87_07810"
                     /inference="COORDINATES: protein motif:HMM:TIGR02604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PVC-type heme-binding CxxCH protein"
                     /protein_id="HEY5444357.1"
                     /translation="EFGDEGSEIVFHGQPNTPKLPKDANGRCIRFRPDSNQIEMTSSD
                     CQFGHTFDEWGHRFGCNNSNQGYQEVIADRYFQRNPHLLISDATQSMSDHEDAAEVFP
                     TTTHPDRQIFTNVGVMTSACGLTAYLGDAFPAPYNKNVTFVAEPVSNLVHVDVLKDSG
                     ASFTASRILQSKEFFSSTDAWSRPVNMYVGPDGALYVLDYYRKVIESPEWMSEDAINA
                     GDLYDGTDKGRIFRITPKDAKPAEWTKGLKLGDASIEELVNNLANPNSWWRMNAQRLL
                     VDRADKNAVHALVEMTSNPSAMGRLHALWTLEGLGELKQEQIEQALKDSEAGIRENAV
                     QLAELHLNKSPGLSNALLAMRNDPNAKVRFQLLLTLGFIDSPESAEARNQILFADIND
                     PWVQVAALSASSSQTASLLKVVLGKYRA"
BASE COUNT          321 a          307 c          286 g          349 t
ORIGIN      
        1 ttggcacgat acttacccag aacgactttc aacaatgagg cagtttgcga cgaggaagca
       61 gataaagcag cgacctgtac ccacgggtca ttgatatccg cgaaaagaat ttgatttcgc
      121 gcctcggcgg attcagggga atcaatgaag ccaagggtca gcagcaattg gaatcttact
      181 ttggcattgg gatcattacg catagccaac aaggcattgg acagtccggg tgatttgttg
      241 agatgaagtt ctgccagttg aacagcattt tccctgatgc ctgcttcgct gtcttttaaa
      301 gcctgttcaa tctgttcttg cttcaactct cccaggccct ctagcgtcca taaagcatgt
      361 aaccttccca tcgctgaagg attcgaggtc atttctacca gggcgtgaac tgcattttta
      421 tcggcccggt ctaccaacaa acgctgggca ttcattctcc accaggaatt agggttcgca
      481 agattgttaa ccaattcttc aatcgacgca tctcctaatt ttaatccctt cgtccactca
      541 gcgggtttcg catctttagg ggtaatcctg aagatccttc ccttgtcagt accgtcgtat
      601 aagtctcctg cattaatcgc atcttctgac atccattcag gagattcgat aaccttgcga
      661 tagtaatcaa gtacatataa agctccgtcg gggcctacat acatatttac gggacgcgac
      721 cacgcatcgg tcgatgaaaa gaattcctta ctctgaagaa tacggctagc ggtaaaactt
      781 gcgccactgt ctttcaacac gtcaacatgt acgagattac tgacaggttc tgcaacaaaa
      841 gtgacgttct tattatacgg agcagggaac gcatcgccca aatatgcggt gagtccgcaa
      901 gcagatgtca taactcccac atttgtgaat atctgcctgt cgggatgtgt cgtagttgga
      961 aatacttccg cggcatcctc atgatcagac atgctttgcg tggcgtctga aattaacagg
     1021 tgggggttgc gttgaaaata gcgatcagcg attacttcct ggtagccctg gttggaattg
     1081 ttgcaaccga atctgtgacc ccattcatcg aatgtgtgac cgaactggca gtcgcttgaa
     1141 gtcatttcaa tttgattact atccggacgg aatcttatac aacggccgtt agcatctttc
     1201 ggaagttttg gggtatttgg ctgcccgtga aaaacaatct ctgatccttc atcgccaaat
     1261 tct
//
LOCUS       DATCGC010000806         1316 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_210669, whole genome shotgun sequence.
ACCESSION   DATCGC010000806 DATCGC010000000
VERSION     DATCGC010000806.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1316)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1316)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1316
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210669"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            729..>1316
                     /locus_tag="VIJ87_07815"
     CDS             729..>1316
                     /locus_tag="VIJ87_07815"
                     /inference="COORDINATES: protein motif:HMM:NF024319.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD family hydrolase"
                     /protein_id="HEY5444358.1"
                     /translation="MSATLATLIELQRLKRLDRTGWTLRGLPNGTESVGAHSFGVAVT
                     AMLLADELLDQGVEIDVEKVLRIALLHDWAEARVGDMPRTATLYFGADARRNAESAAL
                     TDIVSQLKASPRYLELYGEYEHRESVEAKLVKAADVIDLLIQVLALERAGARGLDEFW
                     EVTEEPNFRLDGLAKETIDKLVNSILKARSEVVRSS"
BASE COUNT          354 a          279 c          367 g          316 t
ORIGIN      
        1 gaaaaagcta gttatgtgtt tgagggtcgt ttgaagaaga gtgtcacgaa agacggaaag
       61 acaatcgatc agttgattta cgcgagaacg atcgattgac ggcacagtct cagcgatcac
      121 cacagagacg cagagaacgt cgagcatacg ccgagacatt ttcaaatcaa gttggtggcc
      181 caacgaatag aagcttgacc atcgcttgac cgagttctag cattaatcgc actgtttcga
      241 tcaagggagg gaggcagttc tgatggcaga caacgaacgg aagtgcgcac atccaacttg
      301 tgattgcttg atagatcctg atgagaagta ctgtagtgag tattgcaaga acgccgaaaa
      361 gtctggagta gcggaaatcg gctgcggttg cgaacactcg gcatgcagat aagttggaag
      421 agacagttcc gataaagaga acctggagtt atcccgcccc cgctaatacc attctgacta
      481 acgcctgcgc ctgagtttag cgggtgacaa tctgcgactt gataaggaaa cagctcttta
      541 cctcgttgtg agtcaatccg cgagcgtaaa taagaattga tactgagttt tttggttggt
      601 cgttgtcttt tgtgaggtaa gcctcgctga aggcgacgac ctttttgttt gttgtcgaac
      661 aaagtttcta tcaacgcgga ccgccgcacg accaaaagtg gatttgaaaa tgctaaagta
      721 acgactcaat gtctgccacg ctcgcaacgc tgattgagct tcaacgcttg aaacgacttg
      781 accgcacagg ttggaccttg cgcggacttc caaacggaac cgaatcagta ggcgcccatt
      841 cgtttggagt agctgtgacg gcgatgctgc ttgctgatga gttgctagat caaggtgttg
      901 agattgatgt agaaaaggta ttgcgaattg ctttgctgca cgattgggca gaggctcgtg
      961 ttggagacat gccgcgaaca gccacgctct actttggtgc cgacgccaga cgcaatgccg
     1021 aaagtgcggc gctaaccgat attgtgagtc agctgaaagc gtcgccgcgt tatctggagt
     1081 tatatgggga atacgagcat cgtgagagtg ttgaggcgaa gttggtcaag gcagctgatg
     1141 taatcgactt attaatccag gtactcgcac ttgagcgagc aggtgcccga ggccttgatg
     1201 agttttggga agtaacagag gagcccaatt tccgcctaga cggtttagcc aaagaaacga
     1261 ttgataaact ggttaattcg attctaaaag cccgaagtga agtcgttcgc tctagt
//
LOCUS       DATCGC010000807         3998 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_343833, whole genome shotgun sequence.
ACCESSION   DATCGC010000807 DATCGC010000000
VERSION     DATCGC010000807.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3998)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3998)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3998
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_343833"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..291
                     /locus_tag="VIJ87_07820"
     CDS             <1..291
                     /locus_tag="VIJ87_07820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444359.1"
                     /translation="FLFYGLLEAGDAAHKNWYYWLALWAILNTVVSFYYYVRFIKVMY
                     LGDRIADDKPLMLSPALRVAVFVSLVGILFIGIWPEKIIAVTRALLKTALLG"
     gene            375..1568
                     /locus_tag="VIJ87_07825"
     CDS             375..1568
                     /locus_tag="VIJ87_07825"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEY5444360.1"
                     /translation="MYLYYFLAAVASYFGVQSLRSGFRYVAYVRRETSKPLPDFHPFV
                     SVIAPSRGLESGLTDNLRTLLSQDYPAYEVLFVFDRADDPAADVLDQLERGNVSARTI
                     ISGPAVDSGQKVHNLRVAVDKLDPHSEVVVFVDTDARPGHLWLRQLVAPLIDEKLGAS
                     SGYRWFVPLHGGFASRLRSVWNASIASALGEDRQKNFCWGGSTAIRRTVFERLNIRER
                     WRGSVSDDFTVTTVLKEAKLPIHFTPNCLVASVGDCDVSELLEFTTRQIKITRVYAPQ
                     LWKALLLGSSLFTIVFFGGILLLMVRIAAGIPSLTLFLVLCFVFALGAAKGLIRWRVV
                     CIPLQSYQSEMRRDLLAHMVLWPVASVLYLYNAIVAGFSRRINWRGITYELKSPNEAV
                     IISRD"
     gene            1599..2789
                     /locus_tag="VIJ87_07830"
     CDS             1599..2789
                     /locus_tag="VIJ87_07830"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY5444361.1"
                     /translation="MQRRLVAIDGDKLKHIGTFSNKVVPNKAVQLVQLLRSSKREMRL
                     GTVILFVTSRCNAFCQTCFYHEELNNPGDMTFQQIAKVSETMPAITDLWLSGGEPTLR
                     RDVSEIIDMFVRNNGVNRIIIPTNGLIKTRVFDIVDKALGNNPGIDLYLNIALDGYGK
                     THDRIRGVPGNWEKALECIEALYPLKTKYTDRFRLNVNTVVCAENYKEIEMLSEFMWA
                     NYRLDGQYFNIIRGETLVGDEIKQVPPEVLPAMYTHVSKLTKQYGDRMFADDDAGKRF
                     VKNAAYVGAITTHYRTQHANFENPTPWPFPCTAGETTAVIDYNGDVRACELREKFATL
                     SDFDYDFGALWSANQRAVELAAIDGGKACWCTHVCFIHDSMRHSRRALLYEVPKNFLT
                     RESW"
     gene            2793..3005
                     /locus_tag="VIJ87_07835"
     CDS             2793..3005
                     /locus_tag="VIJ87_07835"
                     /inference="COORDINATES: protein motif:HMM:NF021073.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HEY5444362.1"
                     /translation="MPDSKEDTNRKTGYAYAAGISLFAVVATFCGLGWLLDKWLGTQP
                     WCLIGGVVLGSAAGLFQFIRISSKTY"
     gene            3251..3688
                     /locus_tag="VIJ87_07840"
     CDS             3251..3688
                     /locus_tag="VIJ87_07840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444363.1"
                     /translation="MANSANEIAEMSIQTEPDHRLNTRVFRVMVAVTVLSATVSAFVG
                     PWRFTTGLIIGGALAIFSHRWLSNSAAAAIRLSIGGGVQQIGLFQFILRYVVVAATVF
                     AAAELGIASLSAMLVGLSSFVLALMVEALREFYFAIIQREEIS"
     gene            3688..>3998
                     /locus_tag="VIJ87_07845"
     CDS             3688..>3998
                     /locus_tag="VIJ87_07845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444364.1"
                     /translation="MFWLLEAAHEGAEHAEEEAHAAPIIVQWVNQLIGEPVYRFEMHY
                     TKPLWDNFLGKFGTNAESAFGPYSPETAVPWYTVMFFIACLLSIAIIWIFKGQLSSDK
                     PG"
BASE COUNT          896 a          940 c         1062 g         1100 t
ORIGIN      
        1 tttctctttt acggattgct cgaagcgggc gacgccgctc ataaaaactg gtactactgg
       61 ctggcactct gggcaattct caacacagtg gtttccttct actactacgt ccgctttatc
      121 aaggtgatgt acctcggcga cagaattgct gacgacaagc cgttaatgct ttctccggcg
      181 ttgagagtcg cggtgtttgt gtcgttagtg ggaatcttgt tcataggcat ttggccggag
      241 aaaattatcg ctgtcacaag ggcgttactt aagacggcgc ttctgggtta gaacgggttc
      301 agccaattgt gagagatggc gatgttttgt tttccaaagc atcgccttca ttgttttatc
      361 ggacattgat gttaatgtac ctctactatt tcctcgccgc agtcgcttcc tacttcggtg
      421 ttcaatcgct gcgcagtggc tttcgatacg tcgcatatgt gcgacgtgaa accagcaagc
      481 cgcttcctga ctttcaccca ttcgtttccg tcatcgcacc aagcagagga ttggagtcag
      541 gtttaactga caatctacgc acgctattga gccaggacta tccggcttat gaggtcctat
      601 tcgttttcga tcgagcagac gatcctgcag ccgatgttct agaccaactc gagagaggga
      661 atgtttcagc ccgcacgatc atcagcggtc cagctgttga ttctgggcag aaggttcaca
      721 accttcgggt tgccgtggac aaacttgatc cgcactcgga ggttgttgtt tttgtggaca
      781 ccgatgcaag gcccggacat ttgtggctac gtcaacttgt cgcgcccttg atagacgaga
      841 agctaggtgc ttcgagcggg tatcgctggt tcgttccatt acatggtgga tttgcttcac
      901 ggttgcgttc cgtgtggaat gcctccattg cgtctgcgct cggtgaagat cggcagaaga
      961 acttttgttg gggtggttct acggcgattc gtcgtaccgt ctttgaacga ttgaacattc
     1021 gtgagcgttg gcgaggaagt gtgtcggacg atttcaccgt gacaactgtg cttaaagaag
     1081 caaagctgcc gattcatttc actccgaact gtttggtcgc ctcggtcggg gattgtgatg
     1141 tgagtgagct cctcgaattc acgacccggc agatcaagat cacgcgcgtc tatgcgccgc
     1201 aactctggaa ggcgctgttg ctcggttcat ctttattcac gatcgttttc tttggcggaa
     1261 tcttgttgct catggttcgg atagcggccg gaattccgtc attaacgttg tttctggtgt
     1321 tgtgttttgt ctttgcgctg ggtgcagcga aggggctgat tcgttggcgg gttgtctgca
     1381 ttccgttgca gagctatcaa agcgaaatgc ggcgagacct gcttgcgcac atggtcctct
     1441 ggccagtcgc ctcagttcta tatctctaca acgcgatcgt tgcggggttc tctcgtcgga
     1501 tcaactggcg aggaattacc tatgaattga aatcacctaa tgaagctgtc attatctctc
     1561 gcgattagct gtccgatatg ctttagcttg tcgcgacgat gcagaggagg cttgttgcga
     1621 ttgacggcga caagctaaag catatcggaa cattctcgaa taaagtcgtg ccaaacaaag
     1681 ctgtccaact agtgcaattg ctgcggtcgt ccaaacgcga aatgcgtctg ggtacagtaa
     1741 tcctgtttgt aacctcacgt tgcaacgcct tctgccagac ctgtttctat cacgaagaac
     1801 taaataatcc cggcgatatg actttccaac agatagcgaa agtctcggaa accatgccgg
     1861 cgatcactga tctttggctc tctggtggtg agcctacgct tcgtcgcgat gtctccgaga
     1921 tcattgatat gttcgtccga aacaacggcg tcaatcgaat catcattccc acgaacggtc
     1981 tgatcaagac acgtgtcttc gacatcgtcg acaaagccct cggcaacaac ccgggtatag
     2041 atctttatct caacatcgcg ctcgacggtt acggcaaaac gcacgacaga attcgcgggg
     2101 ttcccggcaa ctgggaaaag gctctcgaat gtatcgaggc cctttacccg ctcaagacaa
     2161 aatacaccga tcggtttcgt ctgaatgtaa acacagtggt ctgtgccgag aactacaaag
     2221 agatcgagat gctgtcggag tttatgtggg cgaactatcg gctggacggt caatacttca
     2281 acatcattcg cggagaaacc ctcgtcggcg atgagataaa acaagtaccg cctgaagtgt
     2341 tgccggcgat gtacacccac gtctccaagc tcacaaaaca atatggtgat cggatgtttg
     2401 ctgacgacga tgccggcaag cgatttgtta agaatgccgc ttacgttgga gcaatcacta
     2461 cgcactaccg gacgcagcac gccaactttg agaatccaac accctggccg tttccgtgca
     2521 cggctggcga aacaacggca gtgattgact ataacggcga tgtgcgtgcc tgcgagttgc
     2581 gcgagaagtt tgcgacgctt tcagatttcg attacgactt cggggcactt tggtcagcga
     2641 atcagcgtgc cgtggagtta gcggcaatcg atggtggaaa ggcttgctgg tgtacacatg
     2701 tttgctttat ccacgactcg atgcgtcatt ctcgtcgcgc gcttctttat gaggttccga
     2761 agaactttct gacgcgagag agttggtagt cgatgccgga ttcaaaagag gacacgaata
     2821 gaaaaactgg ttacgcctat gcggccggga tttcgttgtt cgcagtggtt gcgacatttt
     2881 gtggtttggg atggttgtta gataagtggt taggcacaca gccctggtgt ttgattggtg
     2941 gagttgtgct tggatctgcg gcgggacttt ttcagtttat tagaatcagt tcgaagactt
     3001 actaatggcg gtgtcctaat ctgagttgtt tactaaaaaa gaaaaacaag aggacgatcc
     3061 actaaatcac actaaacaac accaaagtat ctcttagtga cattacgttt cgtgttgttt
     3121 cgtgtgattt ggtggatcgt tctttcatct accagcacta tggaccccaa aaactttaga
     3181 ttaggacacc acctactaat acccaactcg acaattcatc aatttcacag ttaaaatctc
     3241 cggcttcgca atggccaatt ctgcaaacga gatagctgag atgtctattc agaccgaacc
     3301 agatcatcgc ctgaatacgc gtgttttccg cgtgatggtc gcggtcacgg tgttgtctgc
     3361 tactgtgtcg gcatttgttg gcccgtggcg cttcacaact ggtctcatta taggcggggc
     3421 gttggcgata tttagtcatc gctggctgag caattcggct gctgcagcga tccgcttgtc
     3481 gattggtggc ggagtgcaac agatcggttt gtttcaattc attcttcgtt acgttgtcgt
     3541 ggcggcgact gttttcgcag ccgctgaatt gggaatcgca tccctgtccg ccatgctggt
     3601 gggtttgagt agttttgttt tggctctgat ggttgaagcg ttaagagagt tctatttcgc
     3661 aattattcag cgagaggaaa ttagttaatg ttctggttgc tggaagctgc ccatgaaggg
     3721 gcagaacatg cagaagagga agcacacgcg gcgccaatca tcgtgcagtg ggttaatcaa
     3781 ttgattggtg agccggtgta tagatttgaa atgcattaca ccaagcctct ttgggataac
     3841 ttcctcggga agtttggaac aaatgccgag agtgcgtttg gcccttattc gcctgagacc
     3901 gcagttccct ggtacacggt gatgttcttc attgcgtgtc tgctgagcat cgcgatcatt
     3961 tggattttca aagggcaact ctcgtcagat aagccagg
//
LOCUS       DATCGC010000808         1231 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_377052, whole genome shotgun sequence.
ACCESSION   DATCGC010000808 DATCGC010000000
VERSION     DATCGC010000808.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1231)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1231)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1231
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_377052"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..928)
                     /locus_tag="VIJ87_07850"
     CDS             complement(<1..928)
                     /locus_tag="VIJ87_07850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HEY5444365.1"
                     /translation="MDSNTLTTKHTVRLLDPRNNGLGARITDDATSTPMVAPDGDVYF
                     GVFGSSGNGSRGFLLHFSGDLQTTKTPGAFGWDYTPGIVPASMVPSYTGNSSYLLFCK
                     YNNYISQDGDGVNRVAILDPNATQTDPHSSAPGLVEMREVLTLIGPTPDDTGGQFPFA
                     VQEFCINAPAVNPATNSVFFDSEDGHIYRWNLVTNVIDQAVVLSPGLGQPYVPTVIGP
                     DGTLYTLNGGNFFAVGTKPGVAVTISSSSPDVQRTVVGNPITFTATVAGSAPTPTGTV
                     TFSDLTYNGLTPVTTILASNVPLDGNGRATVTT"
     gene            993..>1231
                     /locus_tag="VIJ87_07855"
     CDS             993..>1231
                     /locus_tag="VIJ87_07855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444366.1"
                     /translation="MLLRAGPAALLSRSISPSPAAFPTNTNDPFPFAAIRASPLWVVL
                     RGAGADPCTLKPKKMFPAESAVIGVLTKTVLLKAAA"
BASE COUNT          305 a          300 c          342 g          284 t
ORIGIN      
        1 atgtggtaac agttgcacga ccattaccgt caagcggtac attgctggcc agtattgtcg
       61 taaccggggt gagtccgttg taagtaagat cgctgaacgt gacggttccg gttggtgttg
      121 gggctgaacc cgcaacggtc gcagtgaacg ttatcggatt gccaacgacg gtgcgctgca
      181 catctggtga tgacgaactg atagtcacgg caacccccgg cttcgtgcca accgcaaaga
      241 agtttccgcc gttgagggtg tagagcgttc catcaggtcc aatcactgtt ggaacatagg
      301 gctgaccaag gcctggtgac aggaccaccg cctgatcgat tacgttcgtg acgaggttcc
      361 aacgataaat gtggccgtct tcgctatcga agaagacgct gttggttgcg ggattaaccg
      421 ccggagcgtt gatgcaaaac tcctgaaccg caaatggaaa ctgaccgcct gtgtcatcag
      481 gtgttggccc aatcagtgtc aatacttcac gcatttcaac caaacctggc gccgatgagt
      541 gtggatcggt ctgagtagcg ttcggatcga gaatagcaac gcggttaacg ccgtcaccat
      601 cttgagatat gtagttattg tatttgcaaa acagaaggta cgaggagttt ccagtatagg
      661 agggtaccat gctagccgga acgatgcccg gcgtgtaatc ccaaccgaag gcaccgggag
      721 ttttagtcgt ctgcaaatca ccactgaaat gaagtagaaa tccacgcgat ccgttccctg
      781 agcttccgaa tacaccgaaa taaacatcac cgtcgggtgc gaccatcggg gtggaagtcg
      841 cgtcgtcagt gatccgagcg ccaaggccgt tattgcgagg atcaagcaat cgtacagtgt
      901 gctttgtagt aagagtattg gagtccaact cgacgagata acaccttaag gaatcgcttg
      961 atgcttttac agggaagtat acggaagatt cattgttgct gagggcggga cccgctgcat
     1021 tactatcacg atcgatcagt ccatcgcctg ccgcgttccc aaccaacaca aacgatccat
     1081 ttccatttgc agcaattcga gccagtccac tttgggttgt actcaggggt gccggagctg
     1141 acccttgcac tctgaaaccg aagaaaatgt ttccagctga gtcagcagtg attggtgtgt
     1201 taacgaagac tgtgttgttg aaggcagcgg c
//
LOCUS       DATCGC010000809         1939 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_244902, whole genome shotgun sequence.
ACCESSION   DATCGC010000809 DATCGC010000000
VERSION     DATCGC010000809.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1939)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1939)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1939
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244902"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(181..1482)
                     /locus_tag="VIJ87_07860"
     CDS             complement(181..1482)
                     /locus_tag="VIJ87_07860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444367.1"
                     /translation="MMISLVENQAVQAELLTDKGKLRQQVDLAVNKTLAIDVHTHVHP
                     PAFKGLFLSGIDDLLTYHYLIAETLRSSDLSHACFWRMSKSERADFVWKTLFVESTPL
                     SEAARGIVTILNSFSLDTRAPNLDEARAFFAAQKETTHLDRVLEMACVSDVVMTNDPF
                     SEQEVQAWQSGLTPDDRFHASLRLDTLLNEWPAPVDVLKIQDLNVSANLSSSTFDELR
                     RFLDKWILRMRPVYMAVSLPDDFQYPADDDRTQLLKEVIMPTAREHGLSLALMIGVRR
                     GVNPALRSAGDGVGKADIRALERICAEFSDVKFLVTMLSRENQHELCVAARKFNNLLP
                     FGCWWFLNNPSIVSEITAERLELIGPSFVPQHSDARVLEQLVYKWQHSRTVIAETLYE
                     TYARLLDSGRAVMPKEVTRDVTRLFSGNFRKWVGMAGQDLL"
     gene            complement(1505..>1939)
                     /locus_tag="VIJ87_07865"
     CDS             complement(1505..>1939)
                     /locus_tag="VIJ87_07865"
                     /inference="COORDINATES: protein motif:HMM:NF024771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enolase C-terminal domain-like protein"
                     /protein_id="HEY5444368.1"
                     /translation="LLDTTFWGGIRQCVKAANVCETFQLGVAMHSSGELGIQLATMLH
                     LAAVIPNLSFAADAHYHQLTDDVIEGGKFEYKDGHIAVPTSPGLGVRLDYDKLSAYKE
                     LYRSLGSYPYDQDPLRPGWVPTIPNDRWADPLDSRIPTNIHL"
BASE COUNT          468 a          505 c          511 g          455 t
ORIGIN      
        1 cgtgcggaaa gcctccggct ttccgttagc tcaataaaga atcagaggct ttgcctcggg
       61 cggcgtagcc gccaacagag tcgcgggtta acggaaagcc ggaggctttc cgcacgggag
      121 gtggcaaagc cgcaatccta agccgcataa caaacaatgc gaattactac atgcgagtta
      181 ctacagtagg tcctgccccg ccattccgac ccacttgcgg aagttgcccg agaacaaacg
      241 cgttacgtcg cgcgtgactt cttttggcat cactgcgcgg ccactgtcca acagtcttgc
      301 gtaagtttca tacagcgtct ctgcaattac agttcgagag tgctgccact tatagacaag
      361 ttgttccagg acgcgagcat cagaatgctg gggcacgaaa ctcggtccga ttagctccag
      421 ccgttcagcc gtgatctccg agacgatcga aggattgttt aagaaccacc agcaaccaaa
      481 aggaagtagg ttgttgaact ttcgcgccgc gacacatagt tcatgttggt tttctcgcga
      541 gagcatcgtc accaaaaact tcacgtcgga aaactccgcg cagatacgct ccaacgctct
      601 gatgtcagct ttgcccactc cgtccccagc ggatcggaga gcagggttta ctccacggcg
      661 tacaccgatc atcagtgcca acgaaagacc atgttctcga gcagttggca tgatcacttc
      721 cttgagcaat tgagtacgat catcgtcggc tggatactgg aaatcatcag gaagcgaaac
      781 tgccatgtag accggccgca ttctcaagat ccacttgtcc aggaatcggc gcaattcatc
      841 aaaggtgctc gacgagagat tggcgctaac attgaggtcc tggatcttga gcacatcaac
      901 gggcgcgggc cattcgttaa gcagcgtgtc caaccgaagc gatgcgtgaa agcgatcgtc
      961 aggagtgagt ccggactgcc atgcctgaac ttcctgctcg ctaaagggat cgttggtcat
     1021 taccacgtca ctcacgcagg ccatctcgag tacgcgatcg agatgagtcg tttccttttg
     1081 tgcagcaaag aatgcgcggg cttcgtccag gttcggtgcc ctggtgtcga gactgaagga
     1141 gttgagaatt gtaacgatgc cgcgggctgc ttctgataat ggagtacttt cgacaaataa
     1201 ggtcttccag acaaagtctg ctcgttccga cttcgacata cgccagaaac aagcatgact
     1261 gaggtccgat gaacgcaatg tctcggcgat caggtaatgg tacgtaagaa gatcgtcaat
     1321 gcccgaaaga aagagtcctt tgaaggcggg tggatgcacg tgagtgtgga catctatcgc
     1381 gagagtcttg ttcacggcga ggtccacttg ttgccggagt tttcctttgt cggttagtaa
     1441 ctcggcttgc acggcttggt tttccaccag actaatcatc attccgtccc tttctggtcg
     1501 cgtcttaaag gtggatattc gtcggtatcc gcgaatctaa cggatctgcc caacggtcat
     1561 ttgggatcgt tggtacccaa ccaggtctca atggatcctg atcgtacggg tacgatccca
     1621 aactccggta cagctctttg taagcactta gtttgtcgta atcgagtcgg actcccaaac
     1681 ccggcgacgt tggtaccgcg atatgaccat ctttgtattc gaatttgccg ccctcgatta
     1741 cgtcgtccgt tagttggtga tagtgtgcgt cagcggcgaa actaaggttg ggaatcactg
     1801 ccgcaaggtg aagcatggta gctaactgaa ttccgagttc acctgatgaa tgcatcgcaa
     1861 cgccaagttg aaaagtctca caaacatttg cggctttaac gcactgtcga ataccacccc
     1921 aaaaagttgt gtcgaggag
//
LOCUS       DATCGC010000810         1030 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_110990, whole genome shotgun sequence.
ACCESSION   DATCGC010000810 DATCGC010000000
VERSION     DATCGC010000810.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1030
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110990"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(239..880)
                     /locus_tag="VIJ87_07870"
     CDS             complement(239..880)
                     /locus_tag="VIJ87_07870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444369.1"
                     /translation="MNRIFLLASLLCLLLIQSSALAQTQDPPRYEVAAEFTTLNREAY
                     DGVRVEPGVGARFTFNFNKTFAVEGAMHISLNECPGCINPGRSGDLFAGVKVGKRYKS
                     WGIFAKARPGIVNVGQLQYVQTGTTGPFPFQAEIKGLDNFAADLGGVVEFYPSRRIVT
                     RFDAGDTIIHFTRRTANGISFDPTTSTYVLVPFTTPARTTHNFQFMASVGFRF"
BASE COUNT          263 a          275 c          248 g          244 t
ORIGIN      
        1 cgttcctgtg tcaacgtcgc cgccatcggc acaaaccatt cgggaaatgg atttgttgtg
       61 accattctta tttgttacag gacgtcctat ggaagcgcaa ctctttggtg cggtgcctcg
      121 tcaccgcttt gttaaatgag cttctcgaaa tggaaacgct ctaacaaagc agtgacgagg
      181 caccgtacgc caaagagacg ccatggcctt agtccaaaga taacaaataa acccgccctt
      241 aaaaccgaaa tcccacgctc gccatgaact gaaagttgtg agttgttctt gccggcgtgg
      301 taaatggcac taggacgtac gtgctggttg tgggatcgaa gctaatgcca ttagccgtcc
      361 gacgcgtgaa atgaataatg gtatcgccag cgtcaaagcg agttacgatt cggcgcgatg
      421 gataaaactc aaccacgcca cctaagtccg ccgcaaaatt atccaggcct ttgatttctg
      481 cttgaaaagg aaacggtcca gtcgttcccg tttgaacgta ttggagttgt ccaacgttca
      541 cgattcctgg ccgggccttc gcgaatatac cccaactctt atagcgctta cccaccttta
      601 cacccgcaaa aaggtcgccg gatcgaccag ggttgatgca acccggacat tcgttcaaag
      661 agatatgcat tgcaccttcg acagcaaaag tcttgttgaa gttaaaggta aagcgcgcac
      721 ccactcccgg ctcaactctt acgccgtcat atgcctcgcg gttgagagtc gtaaactcgg
      781 cggccacttc gtaccttggg ggatcctgcg tttgcgccaa cgcgctcgac tgaatcagca
      841 aaagacacaa caaactcgct agcagaaata ttctgttcat caaactctcc ttcatcggtt
      901 aactgacgga ctgtcgcctg agcacacctg tacctggtct caacaagtga cggttggtga
      961 gagtgcgact tagctttgca acacggagcc aggtccgcgc tgatgtttta aatagggaga
     1021 tctattcggt
//
LOCUS       DATCGC010000811         2035 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_16369, whole genome shotgun sequence.
ACCESSION   DATCGC010000811 DATCGC010000000
VERSION     DATCGC010000811.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2035
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16369"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..980
                     /locus_tag="VIJ87_07875"
     CDS             <1..980
                     /locus_tag="VIJ87_07875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444370.1"
                     /translation="SHDEPRLKPIKTGAARISLAAVSTGEVSNLQIVPAGLYYTSKTS
                     FRSSALLYFGEPIKVEPVELEPDGSPPRDEVRELSSRIESALREVILHAEQNEALQTI
                     SRAERIFSSETTPTSNDTLTDELQLQQLFIKAYSVLQQSQPERLRRLEVRIIRFDEEL
                     RQAGVDPEELAPPSSTLGVFWGILKRAIVFLLMLGPAILGTVVHFPAYRLGGYLSTKL
                     SQNYEDVISTIKIISAMLLFPLTWIVVAGVVYFVLGWVAALVALLVIPLCGYVAVLFF
                     EELDKSLGGLRVLMFFLMRRRFFVRLLAERKAIRNEMLSLGRDGAINGT"
     gene            complement(1022..1339)
                     /locus_tag="VIJ87_07880"
     CDS             complement(1022..1339)
                     /locus_tag="VIJ87_07880"
                     /inference="COORDINATES: protein motif:HMM:NF012610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEY5444371.1"
                     /translation="MKLNVRVNRKSPDSMTRQIREQINTQIEAGLLAVGTLLPSEREL
                     ANTLKVARNVVRGAYEQLMDAGRLRSEGRKGRSVKSGGGSKKKKSTTKTTKTKKASKA
                     RKK"
     gene            complement(1495..>2035)
                     /locus_tag="VIJ87_07885"
     CDS             complement(1495..>2035)
                     /locus_tag="VIJ87_07885"
                     /inference="COORDINATES: protein motif:HMM:NF015535.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="P1 family peptidase"
                     /protein_id="HEY5444372.1"
                     /translation="QTNFGGVLTINGAPVGVELNRYYLKDELTKPGSQGSKSRSNKEN
                     DADGSVMIVIATDAPIDARNLKRLASRAMLGLARTGAAGSNGSGDYAIAFSTSPDVRI
                     KTLSQAERNQSRAIKSLPNDAMSPLFLAVVESTEEAIYNSLFKATTTTGKGHTVEALP
                     LDQTINILRRHGLISQPPK"
BASE COUNT          439 a          492 c          538 g          566 t
ORIGIN      
        1 tttcacacga cgagccacgc ctaaagccga tcaagacagg ggcagcgaga atctcactgg
       61 cagcggtttc tacgggcgag gtatctaatt tacagatcgt tccggcagga ctctattaca
      121 catccaagac tagttttcgc agttccgctc tcttgtattt tggtgaaccg atcaaagttg
      181 aaccggttga acttgaaccc gatggcagtc caccacgaga tgaggtgcgc gaactatcga
      241 gccgaattga aagcgctctc cgcgaagtca tacttcatgc tgaacagaac gaagcgctgc
      301 aaacaatctc acgagccgaa cgcatctttt cgtcggagac cacgccaact agcaacgaca
      361 ccctgacgga cgaactgcag ttacagcagc ttttcatcaa ggcctattca gttttgcagc
      421 agagccagcc tgaacgactg cgccggctag aagtcaggat cattcgtttc gatgaggagt
      481 tgcgacaggc tggagttgat ccggaagaac tggctccgcc ttcgtcaacg ctcggtgtct
      541 tttggggaat actaaagcga gcgatcgtgt ttctgttgat gctggggcct gcaattctcg
      601 gaacagttgt gcacttccca gcctacaggc tcggcggata tctctcgaca aagctgtcgc
      661 agaattatga ggacgttatc tcgacgatca agatcatctc tgcgatgttg ctttttcccc
      721 tgacatggat cgtagtcgcg ggggtcgtct actttgtgct tggttgggtc gccgcgctgg
      781 ttgccttgct cgtgattccg ttgtgcgggt acgtcgcagt tttgtttttc gaagaactag
      841 acaagtccct gggtggattg cgcgtattga tgtttttcct gatgagacgg aggttttttg
      901 tgcggttact cgccgagcgg aaggcaatca gaaatgagat gctttcacta ggtagagatg
      961 gggctattaa cggaacttag atatggcaaa gcagggggaa tgttgggcga gtgtcggatt
     1021 gctatttctt gcgtgctttg ctggccttct tagtcttggt tgtcttggta gttgatttct
     1081 tcttcttgct ccctcctcct gatttaacgc ttcttccttt acgtccttca ctacgtaacc
     1141 ttccggcgtc cattaattgt tcatacgcac ctcggacaac gttacgggcc accttcaaag
     1201 tattggcgag ctcgcgttca ctcggaagaa gagtaccaac agcaagcaag ccagcctcaa
     1261 tctgtgtgtt tatttgctcc cgaatctgcc tggtcatcga atccggactt tttcgattga
     1321 cacgaacatt tagtttcacg tctttgctcc tcgcataaag gtaagaacca gggggcgagt
     1381 caaaacttgg tagggagacc actgcgattc tatcaccggg aattcgagtg tcaaacacct
     1441 tggtgccgga atatgaaaag gttagaccac cgtgaacttg tcgtgataga gcgactactt
     1501 gggtggttgc gatattaggc catgtctgcg caggatgttg atggtctgat ccaaggggag
     1561 cgcttcgact gtatggccct taccggttgt agttgttgct ttgaagagcg agttgtagat
     1621 ggcttcttcg gtcgattcca ctaccgcgag gaatagcggc gacattgcgt cgttgggcaa
     1681 cgacttaatc gcacgtgact ggtttctttc cgcttggctc agtgttttga tgcgaacgtc
     1741 aggagaagtt gaaaaagcta ttgcgtagtc accgcttcca ttacttcctg cggcaccggt
     1801 tcgagcaaga cccagcattg cgcgacttgc cagtcgtttg agatttcggg catctatcgg
     1861 agcgtcggtc gcaatgacga tcattactga cccgtcagca tcgttttcct tgtttgatct
     1921 cgactttgac ccttgtgatc ccggttttgt gagttcgtcc tttaaataat agcggtttag
     1981 ttccacgcca acgggtgctc cgtttattgt caaaacaccg ccgaagtttg tttga
//
LOCUS       DATCGC010000812         1134 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_210770, whole genome shotgun sequence.
ACCESSION   DATCGC010000812 DATCGC010000000
VERSION     DATCGC010000812.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1134)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1134)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1134
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210770"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            366..>1134
                     /locus_tag="VIJ87_07890"
     CDS             366..>1134
                     /locus_tag="VIJ87_07890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444373.1"
                     /translation="MSPLDPLQILQLVGYSVGALLPLWMAVQLVTHRNRLTSLERMLA
                     LLALTMGGWHTSNLVITLHGLFDLGYDRWTTLLRVADTVSVVSITFAYSFLLHVHLHL
                     WANAHMRRLTKGEKLRVYLCYLPTIFLTLAVPKLWMGEYAPMFTKLSFFVIPFAFWIA
                     YVLGLIALTELLIARKTTNRSERRIMRTLAASFIGVGVVIFAALAFGLGEGTIAGLYL
                     KTLANLGSLLPSVLLAYYIYRYRYLEIIIEESLVVVTF"
BASE COUNT          235 a          304 c          274 g          321 t
ORIGIN      
        1 attgtcggat cattttcaaa ccgctggagt agatccaacc aagatccagg ccaacggaat
       61 gggtgcatca aatccagtag tgccaaatac gacgctggcg aacagagcta agaaccgccg
      121 cgtagaaatt acatttactt cgcctttgcc cagaacgagt gctgcgaatt gagccggcct
      181 gcttgtgagt gttggccgtt gggtttgagc ttagtgcttt gatctttgta ttttgttcgt
      241 aacaggcgaa gggttctgcc attgattcaa gatcaacggt gaagccgttc aactagcgaa
      301 caagacgcaa agaggcaagt acaaagctca agtacgtaaa agggcactaa ctcgcaacgc
      361 cgtccatgtc tccgctcgat ccacttcaaa tactacaact cgtcggctat agcgttggcg
      421 cgctcttacc gctgtggatg gcggtccagc ttgttacgca ccgcaaccga ctcacctcgc
      481 ttgagcggat gttggcgttg ctcgcactta caatgggcgg ctggcacact agcaatcttg
      541 taatcactct tcatggtctc tttgatttag gttacgaccg ctggactacc cttcttcgtg
      601 ttgctgacac cgtttcggtg gtcagtatca ctttcgccta ctcctttctg cttcacgtcc
      661 accttcatct ttgggccaac gcccatatgc gtcgtcttac taagggcgaa aagcttcgag
      721 tgtacctttg ctacctgccg accattttct tgaccctggc tgtccccaag ttgtggatgg
      781 gtgaatacgc cccgatgttc acgaagttgt cgttcttcgt gattccgttt gccttctgga
      841 ttgcatatgt cctgggtttg atcgcgctta ccgagttact gattgcccgc aagactacca
      901 atcgcagcga gaggcgaatt atgcgaactc ttgctgcgtc tttcatcggt gtcggcgtcg
      961 tgattttcgc tgccctcgct ttcggccttg gtgaaggaac aatcgccgga ctctatctta
     1021 agacccttgc caatctcggt tcgttactcc cgtcggtact tctcgcttac tacatttatc
     1081 gttatcgata tctcgagatc atcatcgagg agagcctggt agttgttacc ttcg
//
LOCUS       DATCGC010000813         1715 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_44822, whole genome shotgun sequence.
ACCESSION   DATCGC010000813 DATCGC010000000
VERSION     DATCGC010000813.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1715)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1715)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1715
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44822"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..705)
                     /locus_tag="VIJ87_07895"
     CDS             complement(<1..705)
                     /locus_tag="VIJ87_07895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444374.1"
                     /translation="MFTRTTILNVLGVAILIAVASSMANAQATRTWVSGVGDDANPCS
                     RTAPCKTFAGAISKTFIGGEIDALDPGGFGTVTITKSITIDGCCITSILASGTNGVNI
                     NIAPNANDPERRVTLRHLTINGTGASGAVGQRTGLKGINYTQGLTLHVENCFIQNFTQ
                     EGIFMSHAASGGTLHVKDTNVTNCNVGISMTTSTGFVVANMDHVRLEKMTSHGLVVNN
                     HGHAHVNNCYIAFNGGD"
     gene            1258..>1715
                     /locus_tag="VIJ87_07900"
     CDS             1258..>1715
                     /locus_tag="VIJ87_07900"
                     /inference="COORDINATES: protein motif:HMM:NF013396.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mur ligase domain-containing protein"
                     /protein_id="HEY5444375.1"
                     /translation="MASLAGMLQARGHRVTGSDKDVYPPMSTMLQSLGIPVSQGFKAE
                     NLAPAPDCVIVGNAIPRGNPEVEETLKRKLLYRSQAEVVKEEFVRGRHSLVVAGTHGK
                     TTTTSIGAWVIDQGQLNPSFLIGGVAQNFGTSFRVTESNYIIIEGDEYDTA"
BASE COUNT          404 a          422 c          473 g          416 t
ORIGIN      
        1 atcgccccca ttgaaagcga tataacaatt gttcacgtga gcgtgaccgt gattgttcac
       61 aaccaatccg tgcgaggtca tcttctcaag tctcacatga tccatgttgg caaccacgaa
      121 acccgttgag gtagtcatgc tgatgccgac attgcaattc gtgacgttgg tgtctttgac
      181 atgcaaggtt ccgccactcg cggcgtgcga catgaagatg ccttcctgcg tgaagttctg
      241 gataaagcaa ttttccacgt ggagggtaag tccttgagtg taattaattc ccttgaggcc
      301 agtgcgttgt ccaacggcgc ctgatgcgcc ggtgccattg attgtgaggt gacgcagtgt
      361 cactctcctt tccgggtcgt tggcatttgg ggcgatattt atgttgacgc cgttcgtccc
      421 gctggcaagg atcgaggtaa tacagcatcc gtctatcgtt atcgacttgg taatcgttac
      481 agtgccaaat ccacccggat cgagcgcatc aatttcaccg cctataaaag tcttcgagat
      541 ggcaccagca aaggttttgc acggcgcagt gcggctgcac ggattagcgt cgtcgcctac
      601 accggacacc caggtccgtg tcgcttgagc gtttgccatg gaactcgcga cggcgatgag
      661 aatagccaca cctaacacat tgaggatggt tgttcgagta aacatgcgga aagttctcct
      721 ttggatagaa ggggtgatcg ggttagttta caaatagtgc attcagcgct tttgatgcgt
      781 tggcggagtc cgaaatttac gaggtaacac ggaatctggg tcttttgatc cggcgaggaa
      841 gctgaggccc gactcgcctc gtcttgttaa gcgcgggggt tttactacac aaggtgatcg
      901 agtgtcaata ctttttgagg ttggaagcta accaaaacaa cctggtggtt gctaactcag
      961 tgggccgccg ccagaagtag ataacgtttg taaaacacga aagcagttgc taggctcgtc
     1021 gtgtgtcttt ctctcagcga aaactcctag taaccggtgg tgcgccttaa gtagtttcgg
     1081 cggaccgatg cgtccgcctc acgataatcc aggacggacg ggatattgcc gcgcctaagg
     1141 taagccgcca aagatcagca ttgtgcactc cctctttcaa tcgagagtcg agttagagcc
     1201 agagaccctg atcagcaaat aatgcactat cacttaatcg gaatatgcgg gaccgcgatg
     1261 gcgtcgctcg ccggtatgct ccaggcgcgc gggcatcgcg ttaccgggtc ggacaaagac
     1321 gtctacccgc cgatgtctac gatgttgcaa tctcttggca tcccggtaag tcagggattc
     1381 aaagctgaga atcttgcgcc ggcaccggat tgtgtgatcg tgggcaatgc aattccgcgc
     1441 ggtaaccctg aagttgaaga gacgttgaag cgtaagctgt tgtatcgatc tcaggctgaa
     1501 gttgtaaagg aagagtttgt tcggggccgg cattcattgg tggtcgcagg cacccacggc
     1561 aaaacaacca caacaagcat tggcgcctgg gtaattgacc agggacaact caatcccagt
     1621 tttctgattg gcggtgtcgc acaaaacttt ggtacgagct ttcgagtcac tgaaagcaat
     1681 tacatcatca tcgaaggcga cgaatacgac acggc
//
LOCUS       DATCGC010000814         1917 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_479387, whole genome shotgun sequence.
ACCESSION   DATCGC010000814 DATCGC010000000
VERSION     DATCGC010000814.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1917)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1917)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1917
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_479387"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1811
                     /locus_tag="VIJ87_07905"
     rRNA            <1..1811
                     /locus_tag="VIJ87_07905"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          509 a          422 c          551 g          435 t
ORIGIN      
        1 aggtttgctt agaagcagca atcctttaaa gaaagcgtaa tagctcactg gtcaagtagc
       61 cctgcaccga caatataacg gggcttaaac tatccaccga agctttggat gaatttattc
      121 atggtaggcg agcattctgt aactgtgaag cggttccgta aggtccgttg gagtgatcag
      181 aaaagacttt gtcggcatta gtagcgataa cgtatgtgag aaccatacgc accgaaaacc
      241 taaggtttcc tgcgtcaagt taatctgcgc agggttagtc tgtacctaag gcgaggccga
      301 aaggcgtagt cgatggagat ccggttaata ttccggaacc atgggtatgt gatgtgggat
      361 gacgcaacag ggtaggcagg acggctgatg gatgccgttg aagtaaatag gccgtcgttt
      421 aggcaaatcc ggacgacaca aggctaaata ctcggacgaa agtacggtcc ctcgggaccg
      481 gaacaagctg ctgaccccag ttgccaagaa aattctcgtt catctataca tactccactg
      541 gcagtaccgc aaaccgacac aggtaggtgg ggtgagaatc ctaaggtgct tgtgagaacc
      601 ctcgttcagg aactcggcaa aatgtacccg taacttcggg agaagggtag cctcgtcaac
      661 caatggcggg gtcgcagaga attgtcccag gcgactgttt aacaaaaaca caggtctccg
      721 caaagttgta aagacaacgt atgggggctg acgcctgccc aatgctggaa ggttaagagg
      781 agtggttagc cgcaaggcga agctgcgaat cgaagcccca gtgaatggcg gccgtaacta
      841 taacggtcct aaggtagcga aattccttgt cgggtaagtt ccgacctgca cgaatggcgt
      901 aacgatctgg gagctgtctt aacgaggggc acagcgaact tgtagtaccg gtgaagatgc
      961 cggtttcccg catctagacg gaaagacccc gtgcaccttg actacaactt gatagtgatt
     1021 tcgggcaaac gatgcgcagc ataggtggga ggctttgatg tcaggctttc gggcttggcg
     1081 gagccaatgg tgagatacca cccttcgttt gtttggaatc taacctcgac ccgtaatccg
     1141 ggccagggac attatcaggc gggtagtttg actggggcgg tcgcctccta aagagtaacg
     1201 gaggcgctcg aaggttggct caggctgttt ggaaatcagc cgcagagtgt aaacgcataa
     1261 gccagcttga ctgcgagaca tacacgtcga gcaggtacga aagtaggagt tagtgatccg
     1321 gcggtcgctt atggaagtgc cgtcgctcaa cggataaaag gtacgccggg gataacaggc
     1381 tgatcctgcc caagagttca catcgacggc agggtttggc acctcgatgt cggctcatca
     1441 catcctgggg ctgaagaagg tcccaagggt tcggctgttc gccgattaaa gtggtacgtg
     1501 agctgggttc agaacgtcgc gagacagttc ggtccctatc tggtgtgggc gtagcaatat
     1561 tgaaggaatc tgtccttagt acgagaggac cgggatggat ccacctctag tgtacgagtt
     1621 atcgcgccag cggtatcgct cggtagctat gtggagcatg gataaacgct gaatgcatct
     1681 aagcgtgaag ccagacctaa gataagtatt gccagtgaga ctcgtggaag accaccacgt
     1741 tgataggttg gagatgtaag tgcagtaatg tacttagttg accaatacta attgtcccaa
     1801 ggcttgacca taaaatttgt tgacaagcaa atttgaatca agcagctcgt aggaaatact
     1861 acatatattc agttttcaga tatcaagatt ttgaaaatct gttttgagtc ccgcctt
//
LOCUS       DATCGC010000815         1836 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_179158, whole genome shotgun sequence.
ACCESSION   DATCGC010000815 DATCGC010000000
VERSION     DATCGC010000815.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1836)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1836)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1836
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179158"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1836)
                     /locus_tag="VIJ87_07910"
     CDS             complement(<1..>1836)
                     /locus_tag="VIJ87_07910"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF013591.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="M3 family metallopeptidase"
                     /protein_id="HEY5444376.1"
                     /translation="TEQLAEVEKIANNPAPPTFENTIVALEEAGATFDRVGTIYGVWG
                     ATMNGPEFQLVQREMAPKLAQFGDQITQNEALFKRIEAVYNSPAKAKLNAEQQRLVWL
                     DYTNFVRSGARLGPEAKARLSQINQELAGLFTKFSQNVLIEENDQFLLLKSEDELAGL
                     PQSLRDAAASAAATKKQTGWVIMNTRSAIDPFLTYSDRRELREKAWRMFINRGDNGDE
                     HDNNATITQILQLRAERAKLLGYKTHAHWRLENAMAKTPERAMELMEAVWKPAVARVH
                     EEVRDMQALADKEGAKLTIEPWDYRYYMEKVRKDKYDLDQNEVKPYLQLEKLREGIFW
                     VAGELFNFQFTPVTNVPVAHPDIRVWEVTDKTSKRHIGLWYFDPYARAGKRSGAWMNA
                     YRSQERVNGEVTTIVSNNANFIKGKPGEPLLISWDDATTMFHEFGHALHGLNSNVTYP
                     SLSGTAVARDYVEFPSQLMEHWLSTPEVLQRFALHYQTGKPIPQTLVDRIKKSATFNQ
                     GFATVEYLSAALVDMKMHLAGDRKIDPDAFERETLAELGMPKEIVMRHRTPQFLHVFG
                     SDGYSAGYYSYLWSDVLTADAFGAFVEGKGPYDKSVAERLRKNIF"
BASE COUNT          398 a          499 c          468 g          471 t
ORIGIN      
        1 aaaagatgtt tttccgtaga cgttcagcga cagacttgtc gtaaggtcct ttgccttcca
       61 caaatgcgcc gaaagcatcc gcagtcaaca catctgacca gagatagctg tagtaaccag
      121 ccgagtaccc atcgctgcca aacacgtgaa gaaactgcgg tgtgcggtgt ctcatcacga
      181 tttcctttgg cataccaagt tcggccagcg tctctcgttc gaacgcgtcg ggatcgatct
      241 ttcgatcgcc tgccagatgc atcttcatat cgaccaacgc cgccgacaga tactcaaccg
      301 tggcgaatcc ttgattgaag gtcgccgact tcttaatcct atccacgagc gtctggggga
      361 ttggcttgcc ggtttgataa tgcagagcaa aacgctgtag tacctccggt gtcgagagcc
      421 agtgttccat caactgcgac ggaaactcga cgtagtcgcg ggctactgcc gttccagaca
      481 gcgaaggata cgtaacgttc gaattgagtc cgtgcaacgc atgtccaaac tcatggaaca
      541 tcgtagtggc atcgtcccac gagatcagta agggctctcc tggtttaccc ttaatgaagt
      601 tggcattgtt tgagacgatg gttgtaactt caccgttcac ccgttcctgg ctgcgatagg
      661 cattcatcca tgcgcccgaa cgtttacccg cgcgcgcgta aggatcgaaa taccacaaac
      721 cgatgtgacg cttcgatgtc ttgtcggtaa cttcccacac gcgaatgtcg ggatgagcaa
      781 cgggaacatt tgtgactgga gtgaactgga agttgaacag ttcaccagct acccagaaaa
      841 ttccttctcg cagtttttcg agctggaggt acggctttac ttcgttttga tcgaggtcgt
      901 acttgtcttt gcgaactttc tccatgtagt aacgatagtc ccatggctcg atcgtaagct
      961 tggcgccctc tttgtcagcc aacgcctgca tgtcccggac ctcttcgtgc acacgtgcga
     1021 ccgcgggttt ccaaacagcc tccatcaact ccattgcccg ctccggtgtc ttggccattg
     1081 cattttcaag acgccagtga gcgtgcgttt tatagccgag cagttttgca cgttccgcgc
     1141 gcagttgcag aatttgagtg atggtggcgt tgttgtcatg ctcgtcaccg ttgtcgccgc
     1201 ggttaataaa cattcgccac gccttttcac gaagttcgcg tcgatctgag taagtcaaaa
     1261 acggatcgat ggccgatcgc gtattcatga ttacccagcc cgtttgcttc ttcgttgcgg
     1321 cagcggaagc agcggcgtca cgtagtgatt ggggaagacc cgctagttca tcttcgctct
     1381 tcagaagtag aaactgatca ttctcttcga tcagtacgtt ctgactgaac ttagtaaaca
     1441 agccagccag ctcctggttg atttgagaga gacgcgcttt tgcttcgggt ccgagacgtg
     1501 cgccggaacg aacaaagttt gtgtagtcga gccacacgag tcgctgctgt tccgcgttga
     1561 gcttcgcttt agccggcgag ttatagactg cttcgattcg tttaaaaagc gcttcgttct
     1621 gcgtgatttg atcgccaaac tgtgccagct tcggcgccat ctcgcgttga actaactgga
     1681 actcaggccc gttcatcgtc gcaccccaaa ctccgtagat agtaccgaca cgatcaaacg
     1741 tagcaccggc ctcttccaat gcgacgatag tgttctcgaa cgtaggcggg gcagggttgt
     1801 tggcgatttt ttcgacctcc gccagttgct cggtca
//
LOCUS       DATCGC010000816         2686 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_44870, whole genome shotgun sequence.
ACCESSION   DATCGC010000816 DATCGC010000000
VERSION     DATCGC010000816.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2686)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2686)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2686
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44870"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(96..965)
                     /gene="larE"
                     /locus_tag="VIJ87_07915"
     CDS             complement(96..965)
                     /gene="larE"
                     /locus_tag="VIJ87_07915"
                     /inference="COORDINATES: protein motif:HMM:TIGR00268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent sacrificial sulfur transferase
                     LarE"
                     /protein_id="HEY5444377.1"
                     /translation="MSANEATIELQNAGEASAILIAKESSLRELFRQCGSVIVAYSGG
                     VDSSYVAYVANAELGPRAVCVTGVSASLPVYQSAEIDRIVEEFGFNHERVQTDELQNP
                     EYQANNGNRCYFCKDELYTKLESLATSRGIDFIVDGSTMDDLDDYRPGRQAAKEHSVR
                     SPLIEVGMSKADIRELSRRVALPTWDKPASPCLSSRIAYGTTVTIERLTKVDRGEEIL
                     REFGFREFRVRHHDTLVRLEISTSEMDRVLNRDVLDQLAARFRELGFKYITLDLEGYR
                     TGSMNESLRVTKS"
     gene            1202..2665
                     /locus_tag="VIJ87_07920"
     CDS             1202..2665
                     /locus_tag="VIJ87_07920"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5444378.1"
                     /translation="MLASRFPFIRKIATYKTWLVLILVAIFCVSSKAQTDEFGDAAAD
                     PVKLFERGQGAHARHEFEKALEFYEQAIKIKPEFPEAEFQRGNALVSLARFDEAEAAF
                     RRAIDLKKNWSLPHSALGALLMRRERDADATTSFRAALAIDPQDNVALRLLSEIRLRA
                     GDAKEALDLAKRATSGPDAPTSSWIGLAIAERANDNKPGARTILDRTLTEEPTNLAAL
                     LERSDLLIDLKEYELAIADLKNASKVRPNDKIVLSRLAYAYQQAGRAEEAAAVAKAAG
                     LEIQQASGNDKNKVIGTPEEIEAANNDDRNTSRRALEKLIEKNPHSAMLLARLGASYR
                     VDDPARSLELFRKASALQPTQAEYAVGYAAALVQARRFVEAANILRQVVRLNPKNYAA
                     HANLATALYESKQFAAAVVEFEWVVANKPEVIVAQYFIATSHDYLGEYPEALAAYEKF
                     LAGADIKTNQLEIEKVKLRLPTLQRQIKLGEGVKKKP"
BASE COUNT          688 a          718 c          649 g          631 t
ORIGIN      
        1 tgccattggc cgtctccatt tttgcgagtg ccgattgacc ccgcggcgat aattcaactt
       61 cagaaagcta gtccatctga tctaaaaaca tctgtctacg atttcgtcac gcgcaaagat
      121 tcattcatcg acccggtgcg atagccctca aggtcgaggg ttatgtactt gaatccaagt
      181 tcacgaaagc gagcggcgag ttgatccaat acgtctctat tgagcacacg atccatttca
      241 gaggttgaaa tctccaagcg caccagagtg tcgtgatggc gcactcgaaa ctctctaaac
      301 ccaaactcac gaagaatctc ttcacctcga tcaacttttg taagtcgctc gatagtaact
      361 gtcgttccat aagcaattcg tgatgaaaga cacggactcg ccggcttatc ccatgtcggc
      421 aacgcaactc gcctgctcaa ttcgcgaata tctgccttgc tcattccaac ttcaataagc
      481 gggctcctta cggaatgttc tttcgcggct tgccgacccg gtcgatagtc gtcaaggtcg
      541 tccatcgtcg agccgtcaac tatgaaatca attcctcgac tcgtcgctag cgactcaagc
      601 ttcgtgtaca gctcgtcctt acagaaataa cagcggttgc cgttgttcgc ctggtactcc
      661 ggattttgca gttcatccgt ttggactctc tcatgattaa aaccaaactc ctcgacgatt
      721 cgatcaatct ccgcgctttg ataaacaggc aagctcgcag agactcctgt aacgcaaaca
      781 gcccttggac ctaactcggc gttagcgaca tacgcgacat agctactatc aacaccgccc
      841 gagtaagcca ctatcaccga tccacattgg cgaaacagtt cacgcagact tgattccttg
      901 gcgatcagga tcgcagaggc ttcacccgcg ttttgtaatt caatagttgc ttcgttcgca
      961 gacatacctg accgtgggca gagggacact tttagtttag cttctcgtct cgtcgaaatt
     1021 gtgctctagt gtgaaggcat ggtagctcat gcatcaacgg acgtgcaacc agcatctcag
     1081 ctagcgtttg atacattcgc aagtggtgaa tttggacgtt ctgtcgcgcg acatgctaac
     1141 attccagcca tccccggata gattctttgc tcacaataaa tggtgcgcgt tcttgagtat
     1201 cgtgcttgca tctcgctttc cgttcattag aaaaatagcg acgtataaga cctggttggt
     1261 gttaatcctc gtcgcgatct tctgcgtatc gagcaaggct cagactgacg agttcggcga
     1321 cgccgcagcg gatcctgtaa agctcttcga gcgtggccag ggcgcacatg ctcgccacga
     1381 atttgaaaag gccctcgagt tctacgagca agccataaag atcaagccgg aattccctga
     1441 agcggaattc caacgcggca acgcgctagt ttctctggct cgttttgatg aagctgaggc
     1501 agcgttccgt cgagcaatag atctcaagaa gaactggtca cttccccatt cagctctcgg
     1561 agctcttctg atgagacgtg aacgagacgc ggatgccacg acgagcttcc gcgcagcgct
     1621 cgcaatcgat ccacaggaca acgttgctct tcgtctactc tccgagattc gtctccgcgc
     1681 gggggatgct aaagaagcgc tcgaccttgc caaaagagcg actagtggtc ccgacgctcc
     1741 aacgtcttca tggatcgggc ttgcaattgc agaacgcgca aacgacaaca agccaggtgc
     1801 tcgaactatt ctcgatcgga cgctaaccga agagccgacc aacctggcgg cattgctcga
     1861 aaggtctgac ttactaatcg atcttaagga gtatgaactc gcgattgcgg atttaaagaa
     1921 cgcctccaag gtacgaccga acgacaagat tgttctttca agactcgctt acgcttatca
     1981 acaggccgga cgtgcggaag aagccgccgc agtggctaag gctgcgggat tagagatcca
     2041 gcaagcttct ggaaacgaca agaataaagt gatcggaact cccgaggaga tagaggctgc
     2101 gaataacgac gaccgcaaca cgtcgcgacg cgcgcttgaa aagctaatcg aaaagaatcc
     2161 acacagcgca atgttgttgg ctcgactcgg tgcttcgtac cgcgttgacg atccagctcg
     2221 atctttagag ttgtttcgaa aagcatctgc attgcagccg acccaagcgg aatatgcggt
     2281 gggttatgct gccgcactgg tccaggccag gcgattcgtt gaagccgcga acattctgcg
     2341 gcaggttgta cgtttgaacc ccaagaacta tgcggcacac gccaatttag ccacggcact
     2401 ttacgaatca aaacaatttg cagctgcggt ggttgaattt gaatgggtgg tggcaaacaa
     2461 acctgaggta atcgtggctc aatatttcat tgccacgtca cacgattatc ttggagaata
     2521 ccccgaagca ctcgcagcct atgaaaaatt tctggcggga gcggatataa agacaaatca
     2581 actcgaaatc gaaaaagtca aacttcgtct tcctactctg caacgacaaa tcaaactcgg
     2641 agagggcgtg aaaaaaaagc cctgatgctg gatctgaatg tttgtt
//
LOCUS       DATCGC010000817         2593 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_145129, whole genome shotgun sequence.
ACCESSION   DATCGC010000817 DATCGC010000000
VERSION     DATCGC010000817.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2593)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2593)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2593
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145129"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..213)
                     /locus_tag="VIJ87_07925"
     CDS             complement(<1..213)
                     /locus_tag="VIJ87_07925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEY5444379.1"
                     /translation="MNQNHKSQQGFSLIELIIAMTVTIVIAGIASSLLAQSFRLRARE
                     DIRSDAVADAQRALNIVSREIANSGFG"
     gene            complement(230..676)
                     /locus_tag="VIJ87_07930"
     CDS             complement(230..676)
                     /locus_tag="VIJ87_07930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEY5444380.1"
                     /translation="MDEQKRSADKREQQKGFTLIETAMALLVMMIGGLGICAVFAYAI
                     KNNTGARDRAAALAVAQQQMETYRNLQFTDPALTDNSLNPTQVTVTSAERTYTVRTVI
                     TDTTSSLKTIQIQVTPQLSDAAWSNGTVQVTVQRSTFALGSYTGGL"
     gene            complement(700..1710)
                     /locus_tag="VIJ87_07935"
     CDS             complement(700..1710)
                     /locus_tag="VIJ87_07935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444381.1"
                     /translation="MTATKTVSIANGSRSETGFTLMQLLIVVAVVGIVSAAAVLGIAS
                     AKQRIRLTNSSRLLASYLEKARVDSVRRHPQNSDDMSGLTMLNSNTYRVKMDFDGDGV
                     METKDFTLDSGVVFATDPISLIFDWRGRLVDLPITEIKVSIAMQWGTDPNDQRIVDVT
                     RSGDVTIDSDVYLDDVPNVNVNVGGLTGIDSGSTLNGNNTATPTPTPEPSPTPTPTPT
                     PTPTPTPTPDPNGTPTPTPTPTPIPSPSPSPSPTPCLVTVTTNPNPLSIHKNGGSGTI
                     DFSINPSGAVTLASTPASNLSVTGSGTSFTVESLNNTRGSFTLTFTTPCGSQNVTVTV
                     VN"
     gene            complement(2225..>2593)
                     /locus_tag="VIJ87_07940"
     CDS             complement(2225..>2593)
                     /locus_tag="VIJ87_07940"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: protein motif:HMM:NF014200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004185 - serine-type carboxypeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HEY5444382.1"
                     /translation="PSDILPVAGIDPGTLQERFAGPNWKGSVIAKTGTLVHTDGGASA
                     LVGQMRAANGEVLLFVIFNQRGSVVRFRENQDYLVMLIQNSRGGPKPFDYKPLTLMMQ
                     LSNTESTVGSEEFEPKSKGQ"
BASE COUNT          547 a          651 c          726 g          669 t
ORIGIN      
        1 tccaaagcct gagttagcga tctccctgga aacgatattg agcgcgcgtt gtgcgtcggc
       61 aacagcgtcc gaacgaatgt cttcccgcgc tctcagccga aacgattgcg cgaggagcga
      121 actcgcgata cccgcaatga cgatggtcac tgtcatcgcg atgatcaatt cgatcagtga
      181 aaaaccctgt tgcgatttat ggttttgatt cattgctaat caatccttct tacaaaccgc
      241 cagtgtatga accaagggcg aatgtcgatc gttgtactgt gacttgtacg gtgccgtttg
      301 accacgccgc atcgctcagc tgcggtgtga cctggatttg aatcgtcttc agcgacgagg
      361 ttgtgtcggt gatgactgtc cgaactgtgt acgttcgttc ggcactcgtc accgtaacct
      421 gtgtaggatt gagtgaattg tcagtcaggg ccggatcggt aaattgcaga tttcgatagg
      481 tctccatctg ttgttgagcc acggctagtg cagctgctcg atcgcgcgca cctgtattgt
      541 tcttaattgc gtaagcgaag accgcgcaaa tcccaagtcc gccaatcatc atcaccaaaa
      601 gagccatcgc cgtttcgatc aacgtgaatc ctttttgctg ttctctcttg tccgctgatc
      661 ttttctgctc gtccatcgtt ttctcctcaa cttaagaatc tagtttacga cggttaccgt
      721 gacgttttgc gaaccgcacg gtgtcgtgaa ggtgagcgtg aagctgccac gcgtgttgtt
      781 caatgattca actgtgaaag atgttccgga gcctgttact gacaggttgc tcgctggagt
      841 actcgcgaga gtgaccgcgc ccgacggatt gatcgagaag tcgatcgtgc ccgatccccc
      901 gttcttatga atcgaaagcg ggttcggatt cgtcgtcacc gttaccaaac acggcgttgg
      961 ggaaggactc ggactaggac ttggtatcgg cgttggagtt ggtgtcggcg ttggcgtccc
     1021 atttggatcc ggcgtcggcg ttggcgttgg cgttggtgtc ggcgttggtg ttggcgttgg
     1081 cgaaggctca ggcgtagggg ttggcgttgc tgtgttattg ccgttaagag ttgaaccaga
     1141 gtcaatgccg gttagtccac ccacattcac gttaacgttt ggtacgtcgt cgagatagac
     1201 gtcgctatcg atcgtaacgt cgccggaacg tgtgacgtcc acgatgcgct gatcgttagg
     1261 atctgtgccc cactgcattg caatactgac tttgatttct gttatcggaa gatcaactaa
     1321 gcgaccgcgc caatcgaaaa tcaatgagat gggatcagtt gcaaatacaa cccctgagtc
     1381 gagcgtgaaa tcttttgtct ccatgactcc atcgccgtca aagtccatct tcacgcgata
     1441 ggtgttgctg ttgagcattg tcagtccgga catgtcgtcc gagttttgcg gatgccgacg
     1501 gactgaatca acgcgcgctt tttcgaggta gctggccagg agccgggaag agttggtcag
     1561 ccggatgcgt tgcttagctg aggcgattcc caggactgcc gcggcggaga cgataccgac
     1621 gacggcgacc acgatgagca attgcatcag ggtaaagccg gtttcggatc tggaaccgtt
     1681 tgctattgac actgtctttg tggcggtcat ctctcctccg tagcgggtaa cttggggaaa
     1741 ttcgcgaaga gcccctgccg ctcaaggagc aatgaccatg ccagcaacaa tcgcgagcaa
     1801 aaaggggctg gttcttgcgg gcaatctttg gttttggtct ggagtagtta cttaaggtga
     1861 cggtgttgga agtggattac ctattgggcc gcgcagagga ctcaggagcg aacagcaaga
     1921 aagttatccg gttctgcgga agatgaccct ggtttgcact ttctttagag agtaagcggc
     1981 gaacaagcca agctgcttat tgctccttca aggaatcgtc cgctgctgtg tggtgccgca
     2041 cgccgcgcgc agtttggacg gtaaagcgcc ccgacgatcc tcggatcggc ggggcgcaaa
     2101 tttttgaatt gggaatttcg aatctcagac cgaaggaagg atctcagttc gaagatctca
     2161 aatctcaaat cgaagatctc agatggggaa aggcgtagcg tctgagatct taaatctgag
     2221 atctttattg ccctttgctt ttcggctcaa actcttcgct gccaaccgta ctttccgtat
     2281 tcgacaactg catcatcaac gtcaggggct tgtagtcgaa cggctttggg ccaccccggc
     2341 tgttttgaat caacataacg agatagtcct gattttctct gaaccgaaca acgctgcctc
     2401 gttggttgaa aatcacaaag agcagtacct cgccgtttgc cgctctcatc tggcccacca
     2461 gggcgcttgc gcctccatcg gtgtgcacga gtgttccagt ttttgcgatt acgctgcctt
     2521 tccagttcgg gccggcgaat cgttcctgaa gtgttccggg atcgattccc gccaccggca
     2581 gaatgtcaga cgg
//
LOCUS       DATCGC010000818         1155 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_145143, whole genome shotgun sequence.
ACCESSION   DATCGC010000818 DATCGC010000000
VERSION     DATCGC010000818.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1155)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1155)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1155
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145143"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            42..>1155
                     /locus_tag="VIJ87_07945"
     CDS             42..>1155
                     /locus_tag="VIJ87_07945"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HEY5444383.1"
                     /translation="MLLVPFVTSGQTPAASPSPAFDNYVPGPDSKPQPDVPKGEIIKL
                     SFDKSKIFPDTVRDYWIYVPAQYKPDKPACVFVMQDGIRFEAPTVFDNLINKKEIPIT
                     IGVFVAPGVVKTPNAAAALDRFNRSFEYDGLGDAYARFLLEELLPEVETKKTADGRAI
                     RLSHEGNDRAIGGASSGAIAAFTAAWERPDAFSRVFSSIGTFVDLRGGMRYPALIRKF
                     EPKPIRIYLQDGSNDLNIYGGDWWMANQTMERAFIFAGYEVEHAWGDGGHTGKHATLI
                     FPDALRWLWKDWPKHVGNGPTKNPTLNDILLPGEGWQLVSEGYKFTEGPAVNQQGELL
                     FNDFSGSKSFKVGLDNKVIQTVADSKRSNGQAFGPDG"
BASE COUNT          282 a          301 c          291 g          281 t
ORIGIN      
        1 aatacccaac atcgagaacg ttatttctta tcaccctctt tgtgctgctc gtaccatttg
       61 taacttccgg acaaacgccc gcagctagtc cgtcgccagc gttcgacaac tacgttccag
      121 gcccggattc caagccacaa cctgatgttc ccaagggcga gatcataaaa ctcagtttcg
      181 acaagtcgaa gatttttccc gacacggttc gcgactattg gatttatgtc ccggctcaat
      241 acaaacctga caagcctgct tgtgtcttcg ttatgcagga cgggattcgc ttcgaggcgc
      301 caacagtctt cgacaatcta atcaacaaga aagagatacc gattacgatc ggcgttttcg
      361 ttgcaccagg cgttgtcaaa actcctaatg cagctgccgc tctcgatcgt ttcaacagaa
      421 gctttgaata cgacggactc ggcgacgcat acgctcgctt cctgctcgaa gaattgttgc
      481 cggaagttga aactaagaag actgctgacg gacgcgcgat tcgcctttcg catgaaggta
      541 acgaccgtgc gatcggtggt gcatcgagtg gggcaatcgc agcgtttacc gccgcatggg
      601 aacggcccga tgcgttttcg cgtgtcttca gttcgatcgg aacttttgtc gatctgcgcg
      661 gtggtatgcg ttatccagcg ctgattcgta agtttgagcc caaacctatt cgcatctacc
      721 ttcaggatgg ctctaacgat ctaaacatct acggcggcga ttggtggatg gcaaatcaaa
      781 ccatggagcg cgcattcata tttgccggct atgaagttga gcatgcatgg ggggatggtg
      841 gacacaccgg taagcacgcg acattgattt ttcctgatgc tcttcgctgg ctttggaaag
      901 attggccaaa acatgtgggt aacggtccca caaagaaccc gacgctcaac gacattcttt
      961 taccgggcga aggctggcag cttgtttctg agggctacaa attcaccgag ggtccggcag
     1021 tcaatcagca aggtgaactg ctcttcaacg acttcagcgg cagcaagtcg ttcaaagttg
     1081 gacttgataa caaagtcatc caaacagtcg ccgactcgaa acgaagtaat ggtcaagctt
     1141 ttggacccga tggtc
//
LOCUS       DATCGC010000819         1143 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_377291, whole genome shotgun sequence.
ACCESSION   DATCGC010000819 DATCGC010000000
VERSION     DATCGC010000819.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1143
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_377291"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            96..>1143
                     /gene="trxB"
                     /locus_tag="VIJ87_07950"
     CDS             96..>1143
                     /gene="trxB"
                     /locus_tag="VIJ87_07950"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR01292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004791 - thioredoxin-disulfide reductase
                     (NADP) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HEY5444384.1"
                     /translation="MDNETIKKDVVIIGSGPAGLTAAIYSARANLNPLLIDAPADTEK
                     QTTPGGQLMITTDVENYPGFAKGIQGPELMEEFRKQAERFGTEFLESWITEVDLSERP
                     FTLYTTGPTITTQTLIIASGASAKWLGIPGEAKVPNGFGGHGVSACATCDGPLPAFRN
                     RTLVVVGGGDTAMEEATFLTRYAAKVYVVHRRDKLRASKIMQDKAFGNKKIEFIWNTG
                     VDEILGTPDDGVNGVRLRNLQSGEVRDFPCEGVFIAIGHKPNTALFKGQLDMDEVGYL
                     KTSGHSTATNIPGVFACGDVQDSVYRQAITAAGTGCMSAIDAERFLDHMPVAMPDGEQ
                     VTVDGEHITPDHKAI"
BASE COUNT          288 a          286 c          319 g          250 t
ORIGIN      
        1 gaaaaggcta tactctttgc ggccaatgcc aataatttcc ctgtcaatac tcaagttgta
       61 cgccaacttg cgcgaaggag aacagacgtt tagcaatgga taacgagaca atcaaaaagg
      121 atgtagtcat tataggttcg ggacccgccg gtctgactgc ggctatctac tcggcgcgcg
      181 ctaacttgaa tccgctgctc atcgatgccc cggcggacac ggagaaacaa acgacgccgg
      241 gtggccagct aatgataacg accgacgtag aaaactaccc gggcttcgca aaaggcatcc
      301 agggtccgga gttgatggaa gagtttcgca agcaggctga gcgttttgga accgagtttc
      361 tcgaaagttg gataacggaa gttgacctga gcgaacgacc gtttacgctt tacacgacag
      421 gtcccacgat tacaactcag acattgatca tcgcttccgg tgcttctgca aagtggctgg
      481 gaattccggg cgaagcgaaa gttccaaacg gtttcggagg acatggtgtt tcagcctgcg
      541 caacttgtga cggccccttg cccgcttttc gaaatcggac gctggtggta gttggcggcg
      601 gcgatactgc aatggaggaa gcaacgtttt tgactcgcta cgccgccaaa gtctatgtcg
      661 ttcatcgccg cgacaaactg cgcgcctcga agataatgca ggacaaggcc ttcggtaaca
      721 aaaagatcga gttcatttgg aacactggag tcgacgagat tctcggaaca ccagacgacg
      781 gtgttaatgg tgtccgacta cggaatcttc agtctggcga agtacgtgac tttccttgtg
      841 aaggggtatt tattgcgatc ggtcacaagc caaacactgc actcttcaaa ggtcagctcg
      901 atatggacga ggtgggttat ttgaagactt ccggacactc aacggcgacc aatattcccg
      961 gcgtctttgc ctgcggcgac gttcaggatt cggtttaccg gcaggcgatc acggcagccg
     1021 gaacgggttg catgtcagcg attgatgccg aaaggtttct tgaccacatg ccggtcgcga
     1081 tgcctgatgg tgaacaagtt acggtcgacg gcgaacacat cacgccggat cacaaagcga
     1141 tca
//
LOCUS       DATCGC010000820         1958 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_479444, whole genome shotgun sequence.
ACCESSION   DATCGC010000820 DATCGC010000000
VERSION     DATCGC010000820.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1958)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1958)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1958
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_479444"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            335..>1958
                     /locus_tag="VIJ87_07955"
     CDS             335..>1958
                     /locus_tag="VIJ87_07955"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HEY5444385.1"
                     /translation="MASDLVTFSPAINDERPQLVDAVKLIVNRHNDGHRATSIVIPPR
                     VGKSNVIRLSALELVQTGVACTTLALVPWENLADQLVNKKKLDEMSAKYPVTAPEISF
                     LCQRIRQLSMNFHELSYVQHLWVSTIQLANSQILILSNWLDRCNSNSEFKHKRPVVFV
                     DEGQMLSHKNEWGGIARLVEEKNAHVILLTGTPYRADRADIPGFRVDEMNKKDIEKVV
                     GTRINDQQVLMRFYKGTSSERVLCPNYEMPLKDAWDLGCLCRVDAQWVNIMLDIKDDD
                     GVVTKTVSLDDMKPTAAQKQLRKASTDEKTMLEMLGRGVSSLAEIRRIRKCESAGMLV
                     ITCSDIDDEGQEVDGGTGNWHARLARRILGELDPTLHVVIATQADEQREKSNQGLKRL
                     QNFVNNDIGDVLIVKSMGTVGMDCGRIKVVVLMGTFRQLASWLQAILRGATAWRDIKF
                     FKLVLLEDPLNKLNYEFLIEGQGGSFTVSELEFIKEELLEKEKKDDDIPDISVNSAKV
                     KRAEDSLGKGTTELESVQKLLKIDPELGRAFST"
BASE COUNT          524 a          418 c          540 g          476 t
ORIGIN      
        1 ccggcatcgt gcgcatgctg gagtaacggc ttttgaattg tcgggaagcc ccggctagat
       61 ttggttgaac cgctgggatg gctggcggtg caaacggaag taagcgtgcc cgcgtagagt
      121 gggttgtcaa tgaagcgaag acgtctgact cagtcggaga gactgaatgt gttcatgacc
      181 acgagtgggc attgcgccct ctgctggata gaactcgagt tctggggcgg ctggcatgcc
      241 gaccatattc ttgcgttctc acacacaggc cggacagtcg cagccgaaat gcaaccgtta
      301 tgtcgggcat gcaatcttcg caaaggagcg aaagatggca tccgaccttg tgacgttttc
      361 ccctgctata aatgacgagc gcccccagct tgttgatgca gtaaaactga ttgtcaatcg
      421 gcataacgat gggcacagag ccacatccat cgtcattccc ccacgtgttg gaaaatcaaa
      481 cgttattcgt ttgagcgcct tggaactggt ccagacaggc gtagcctgta ctacgctggc
      541 attggttcct tgggagaatc ttgcggatca gctcgttaac aagaaaaaat tggatgagat
      601 gtccgcaaag tatccggtaa ccgctccgga aatttctttt ctgtgccagc gtatcaggca
      661 actgtcgatg aattttcacg agttgagcta tgttcaacat ctgtgggttt ctactatcca
      721 gctagctaat tctcaaatac tgattctcag taactggctt gatcgttgta attcaaacag
      781 tgagttcaag cacaagcggc cggttgtgtt tgttgatgag gggcaaatgc tgtctcataa
      841 gaatgagtgg ggcggcattg cgcgattagt ggaggagaag aatgctcacg tcatattgct
      901 gacaggtaca ccataccgcg cagaccgggc agatattcca ggcttcagag tcgatgaaat
      961 gaataagaag gacattgaaa aggttgtggg tacgcgcatc aacgatcagc aggtactgat
     1021 gaggttctac aagggaactt catcggaacg cgtactctgc ccaaattatg aaatgccttt
     1081 gaaggatgcg tgggatttag gatgtctgtg ccgtgtagat gcccaatggg taaacatcat
     1141 gctggacata aaagatgacg acggcgtggt tacaaaaact gtctctctcg acgacatgaa
     1201 gccaactgcg gcgcagaaac aactccgcaa agcgtctact gatgaaaaaa caatgctgga
     1261 aatgttgggg cgtggggttt ctagcctggc agaaattcgc agaataagaa aatgcgaaag
     1321 tgctggcatg ctcgtcatca cttgttcaga tattgacgac gaaggacaag aagtcgacgg
     1381 tggcacagga aactggcatg ccaggctggc ccgccgaatt cttggtgaat tggatccgac
     1441 attgcatgtt gtcattgcga ctcaagcgga tgaacaaaga gaaaagagca atcaaggttt
     1501 gaagcgcctt caaaacttcg tcaacaatga cataggcgat gttttgatcg tcaagtccat
     1561 gggtactgtc ggcatggatt gtgggcgcat caaggtcgtg gtcttgatgg gtacttttcg
     1621 ccaacttgcg tcgtggcttc aagctattct gagaggtgcc actgcgtggc gtgacatcaa
     1681 gtttttcaaa ttggtgctcc ttgaagatcc actcaacaag ctgaattacg aatttcttat
     1741 agaaggccaa ggtgggtcat ttactgttag tgagcttgaa tttattaagg aagagctgct
     1801 tgagaaggaa aagaaagacg atgatattcc agacattagc gtcaacagtg ccaaagtaaa
     1861 gcgtgcagaa gactctctcg gcaaaggcac tacggaatta gagagcgtcc aaaagttgct
     1921 caagattgat ccggaattgg gtcgggcttt cagtaccg
//
LOCUS       DATCGC010000821         1272 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_111135, whole genome shotgun sequence.
ACCESSION   DATCGC010000821 DATCGC010000000
VERSION     DATCGC010000821.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1272)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1272)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1272
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_111135"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1173)
                     /locus_tag="VIJ87_07960"
     CDS             complement(<1..1173)
                     /locus_tag="VIJ87_07960"
                     /inference="COORDINATES: protein motif:HMM:NF039196.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HEY5444386.1"
                     /translation="MVDQLRSFASEVTRVAREVGSDGKLGGQADVRGVAGTWKDLTDN
                     VNMMAGNLTAQVRNIAEVTTSIANGDLSRKITVDVKGEILEMKNTINTLVDRLGSFAS
                     EVTRVAREVGSEGILGGQAEVSGVAGTWKDLTDSVNQMAGNLTAQVRNIAEVTTAVAK
                     GDLSRKITVDVKGEILELKDTINTMVDQLNSFASEVTRVALEVGTEGKLGGQAKVQDV
                     GGTWKDLTESVNQMASNLTAQVRNIADVTTAVATGDLSKKITVNVAGEILELKNTINT
                     MVDQLNSFASEVTRVALEVGTEGKLGGQAKVQGVGGTWKDLTDSVNQMGSNLTAQVRN
                     IAEVTTAVAKGDLSRKITVDVKGEILELKNTINTMVDQLNSFGSEVFRVAREVGSEG"
     gene            1090..>1272
                     /locus_tag="VIJ87_07965"
     CDS             1090..>1272
                     /locus_tag="VIJ87_07965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444387.1"
                     /translation="MAAQFSIRTNFARDTSHFRGERSELIDHGVDRVLQFQNFAADID
                     GDFLGEIAVRDRRRHLG"
BASE COUNT          285 a          367 c          241 g          379 t
ORIGIN      
        1 accttccgat ccaacctcac gggcaacacg gaatacctct gaaccaaatg aattcaactg
       61 atccaccatc gtattgatgg tattctttaa ttcaaggatc tcacctttta cgtcaactgt
      121 aatttttctt gacaagtctc cttttgctac agccgttgtt acttctgcaa tatttcttac
      181 ctgcgcagta agatttgatc ccatttgatt tactgaatct gttaagtctt tccaggtacc
      241 accaacaccc tgcacttttg cctgtccacc caatttacct tctgtaccta cttccaatgc
      301 aacacgggtt acctcggatg caaatgaatt caactgatcc accatcgtgt tgatcgtatt
      361 ctttaattca agaatttcac cagccacatt caccgtaatt tttttagaaa ggtcaccggt
      421 tgcaacggca gtcgttacat ctgcaatatt tctaacctgc gcagtaagat tggaagccat
      481 ttgatttacg gactctgtta agtctttcca tgtaccaccc acatcctgca cttttgcctg
      541 ccccccaagt tttccttccg ttccaacctc caatgcaaca cgggttacct cagatgcaaa
      601 tgaattcaac tgatccacca tcgtgttgat cgtatctttt aattcaagga tctcaccttt
      661 tacgtccact gtaatttttc ttgacaaatc acctttcgca accgctgtcg ttacttccgc
      721 aatattcctt acttgtgctg taaggttgcc agccatttgg tttaccgaat cggttaggtc
      781 tttccaagtg ccggccacgc cgctcacttc ggcttgacca ccgaggattc cttccgaacc
      841 gacttcgcgg gccacacgag tcacttctga tgcgaatgaa ccaagacgat cgaccagcgt
      901 attgatcgtg tttttcatct cgaggatttc gcctttcaca tcgacggtga tcttccgtga
      961 gagatcgcca ttcgcgattg aagtcgtgac ctcggcgatg ttgcgcacct gcgcagtcag
     1021 attaccggcc atcatgttca cgttatcggt caaatctttc catgtcccgg cgacacctct
     1081 tacatccgct tggccgccca gttttccatc cgaaccaact tcgcgcgcga cacgagtcac
     1141 ttccgaggcg aacgatcgga gttgatcgac catggtgttg atcgtgtcct tcagttccaa
     1201 aatttcgccg cggacatcga cggtgatttt cttggagaga tcgccgttcg cgaccgccgt
     1261 cgtcacctcg gc
//
LOCUS       DATCGC010000822         1331 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_245087, whole genome shotgun sequence.
ACCESSION   DATCGC010000822 DATCGC010000000
VERSION     DATCGC010000822.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1331
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245087"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            26..>1331
                     /locus_tag="VIJ87_07970"
     CDS             26..>1331
                     /locus_tag="VIJ87_07970"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY5444388.1"
                     /translation="MKRFAFLLLVLCTVPFVANGQNWPQFRGPGATGVVEGRPAPVKW
                     DAEKSVNTVWKTEIPGLAHSSPVIWGNKIFITTAVTTGAKDETRYGLFGDVAPVKDDP
                     KHVWKVYALDKLTGKILWERVAYEGLPKVKRHPKSTHADSTPVTDGKYLIALFGSHGL
                     YAYDLDGKLLWKQDIGMLDSGWFYDPDYQWEHGSSPIIYRDLVIIQADVQKDSFIAAY
                     SLKNGKLVWKTPREEVSSWGTPTIYEGKTRTELIANGSKAIRSYDPLTGKELWRLGPN
                     SEITTPTPFVARDLIYVTSGYAPIQPIYAIRPGATGDISLKDGAVTNTFIAWSKQRGG
                     PYMPTPLVYGDLLYTCSNQGVVTAYNADTGDRLYQERLGGKGGAFTASPIATDGKLYL
                     MSEDGDVFVVKTGPKYELLSTNPVGEVMMASPAISDGLVIVRG"
BASE COUNT          320 a          323 c          377 g          311 t
ORIGIN      
        1 ctccaagcca aagtggagga cgtttatgaa acgcttcgca tttttgctcc tggttttgtg
       61 caccgtccct ttcgttgcca atggtcagaa ctggccgcag tttcgtgggc caggcgcgac
      121 tggagtagtt gaaggacggc ctgcacctgt gaaatgggac gcagagaagt cggttaatac
      181 ggtatggaag accgagattc ccggactggc tcattcgagt ccggttattt ggggcaacaa
      241 gatttttatt acgaccgcag tcactactgg tgcaaaggat gagacgaggt atggactctt
      301 cggcgacgtt gccccggtca aggatgatcc caagcatgta tggaaggttt acgcgctgga
      361 taagctaacc gggaagattc tttgggagcg cgtcgcctac gaaggtctgc caaaggtcaa
      421 gcgacatccg aaatcgaccc atgccgattc gactcccgta acggacggaa aatatctcat
      481 cgctcttttc gggtcgcatg gtctttatgc ctacgacctc gacggcaagc tgctctggaa
      541 acaggatatc ggaatgctcg actcgggttg gttctacgat cccgattatc agtgggaaca
      601 cggcagctcg ccgatcattt atcgtgacct ggtaattatt caagcggatg ttcagaagga
      661 ctcttttatt gcggcttaca gtctgaagaa cggaaaactg gtttggaaaa ctccgcgaga
      721 agaagtttcc tcctggggga cgccaaccat ctacgaaggg aagacgcgaa ctgaactgat
      781 cgcaaatgga tcgaaagcta ttcgcagtta cgatcctttg acgggtaaag aactgtggcg
      841 tcttggtcca aactccgaaa taacaacacc taccccattc gtcgcgcgtg atctgattta
      901 cgtcaccagc ggttatgcgc cgatccaacc aatctatgct attcgacctg gagctacggg
      961 cgacatctcg ctgaaagacg gcgcggtcac taacacgttc atcgcgtgga gcaaacagcg
     1021 tggtggcccc tacatgccga cgccgttggt ttatggagac ttgctctaca cttgttcgaa
     1081 tcaaggagtc gtgaccgcat acaacgcgga cacgggagat cggctttacc aggaacggct
     1141 gggtggtaaa ggtggggcct ttacggcatc gccaatagct accgacggca agttgtactt
     1201 gatgagtgaa gacggtgatg tattcgtcgt gaagaccggt cctaaatacg agctgctctc
     1261 aacgaacccg gtcggtgaag tgatgatggc aagcccggcg atttcggatg ggttggttat
     1321 tgttcgagga t
//
LOCUS       DATCGC010000823         1093 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_344059, whole genome shotgun sequence.
ACCESSION   DATCGC010000823 DATCGC010000000
VERSION     DATCGC010000823.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1093)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1093)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1093
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_344059"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1043)
                     /locus_tag="VIJ87_07975"
     CDS             complement(<1..1043)
                     /locus_tag="VIJ87_07975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444389.1"
                     /translation="MDPLSKILELPIGERELRGLVHTPREIFQQPDTWWGTFEKVNSI
                     RHDIQSFLKQAGIYRESKERPSVFLIGAGTSDYVGRSVSTILRRSWQCEVCAVPSTDV
                     LTCLDDLRIKDNPYLWVSFSRSGDSSEGVAILESALERSPEIRHIIVCCNEGGRMSWL
                     RNDAQNVCRIILSDDVNDKGLAMTSSYSNMVIAAQCLAHLEDLDGYGRTLESLIAAAR
                     TLLPTAAEITEQLVAEKFSKICFLGTGPLQGVAVESALKVVELTAGRVFSFSESFLGV
                     RHGPLSAIDRDTLVVAFVSTDQLRRAYELDLLEEIKNKKLAKNILTVALVGEPEDEKR
                     LAKVGIGLQLDTSV"
BASE COUNT          285 a          294 c          246 g          268 t
ORIGIN      
        1 accgaagtat caagttggag tccaatacct acctttgcta gccttttttc atcttctggt
       61 tcacctacca gtgctacagt taagatattt ttggctaatt tcttgttctt gatctcctcg
      121 agcaagtcca gttcgtaggc acgacgaagt tgatcggtcg agacaaaagc aaccaccagg
      181 gtgtccctgt cgatggccga gagtggacca tgcctcactc ccaagaatga ttcactaaaa
      241 ctaaacactc taccggccgt aagctccacc accttcagcg ccgactctac agcaacacct
      301 tgcaaggggc cggtgcccag aaaacagatc tttgaaaatt tttcggcgac cagttgttcg
      361 gtaatttcgg cggctgtggg aaggagggtt cgcgctgctg caatcaacga ctccaacgta
      421 cgcccgtaac cgtcaagatc ttcaaggtga gccagacact gagccgcaat caccatattt
      481 gagtaagaac tggtcatagc cagcccttta tcgttgacgt catcgctcag aattatccga
      541 caaacatttt gtgcgtcgtt tcgaagccac gacattcgac cgccttcgtt gcagcaaaca
      601 ataatgtgac gaatctctgg gctccgctcc aaggctgatt caaggatggc gactccctca
      661 gagctatcac ctgatcgcga aaatgaaacc cagagatatg gattgtcttt gatccgcaga
      721 tcatccaggc aggtaagaac atccgtgctg ggaactgcac acacttcgca ttgccagctt
      781 cgccgcagaa tagttgatac tgacctacca acgtaatcag aagtaccagc gccaatcaga
      841 aacactgacg gtcgttcttt cgattcccga tagatacctg cttgtttgag aaagctttga
      901 atgtcgtgcc ttatgctgtt gaccttctca aaagtccccc accaggtgtc gggctgttga
      961 aagatctccc taggtgtatg gacgaggcct cgcaactcac gttcaccgat aggtaattcc
     1021 aggattttcg agagagggtc caatgctact aaagcctttc taacgtcgaa gccgatgaat
     1081 tccccaagag aaa
//
LOCUS       DATCGC010000824         1490 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_445410, whole genome shotgun sequence.
ACCESSION   DATCGC010000824 DATCGC010000000
VERSION     DATCGC010000824.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1490)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1490)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1490
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_445410"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1287
                     /gene="groL"
                     /locus_tag="VIJ87_07980"
     CDS             <1..1287
                     /gene="groL"
                     /locus_tag="VIJ87_07980"
                     /inference="COORDINATES: protein motif:HMM:NF009488.0"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEY5444390.1"
                     /translation="DKAVERATREIKKMSKPVTGGMIAQVGTISANGDHSIGELIAEA
                     MDKVGKDGVITVEDSKTMETALEVVEGMQFDRGYLSPYFVTDAETMKAVLENPVILLS
                     EKKISAMRDMLPILEQVAKLGKPILIIAEDVEGEALATLVVNKLRGTINVAAVKAPGF
                     GDRRKAMLEDIAVLTGGKVISEDLGIKLENVKLEDLGTARRVTIDKDTTTIIDGGGET
                     SDLQGRVKTLKSQIEESTSDYDREKLQERLAKLVGGVAVIRVGAATETELNEKKARVE
                     DAMHATRAAVEEGIVPGGGVVFIRAAKVLDKFKLFEDNEDEPVGDADEQIGINIVKRA
                     LEEPLRQIVSNAGKEGAVIVEKVRAEKNPNIGYNAVTEKFEDLVAAGVIDPAKVTRCA
                     LQNAASIAGLMLTTEALISELQDDDKPRALPGGMDM"
BASE COUNT          418 a          349 c          443 g          280 t
ORIGIN      
        1 gataaagcgg tcgagcgcgc aactcgagag atcaagaaaa tgtcgaaacc ggtcacggga
       61 ggcatgatcg cgcaggtcgg cacgatttca gcaaatggcg accacagtat cggcgagtta
      121 attgccgaag cgatggacaa ggttggtaaa gatggcgtca tcaccgtcga agattcgaaa
      181 acaatggaga cggctttgga agttgtcgaa gggatgcagt tcgatcgtgg ctacctttcg
      241 ccctacttcg tcactgacgc ggaaacgatg aaagccgtgc tcgagaatcc ggtcattctg
      301 ctcagcgaaa agaagatttc ggcgatgaga gacatgcttc ccattcttga gcaggtcgcc
      361 aagttgggaa aaccaatctt gattatcgcg gaggatgtag aaggcgaagc cctcgcaacc
      421 ctcgtggtca acaaactgcg tgggacgatc aacgttgcag cggtcaaggc gccgggcttc
      481 ggtgatcgtc gtaaggcgat gctcgaagac attgcagtcc tgacgggtgg caaagtcatc
      541 agcgaagacc tcgggatcaa actcgagaac gtcaagcttg aagacctggg aaccgcaaga
      601 cgtgtgacga tcgacaaaga caccacgacg atcatcgatg gcggtggtga gacgagcgat
      661 ttgcagggtc gggtgaaaac actaaagagt cagattgaag agtctacctc agactatgac
      721 cgcgaaaaat tgcaagagcg gctggcgaaa ctcgttggcg gtgtagcggt aattcgggtc
      781 ggcgcagcga cggaaaccga gctcaacgag aagaaggccc gggtcgagga tgcgatgcac
      841 gcgacacgcg cggcagtaga agaaggcatc gtgccaggcg gcggtgtcgt attcattcgc
      901 gccgcgaaag tgctcgacaa attcaaactc ttcgaagaca acgaggacga acccgtcggc
      961 gacgcagacg aacaaattgg catcaacatc gtcaagcggg cactggaaga gccgctgcgt
     1021 cagattgttt caaacgccgg caaagaaggc gccgtcattg tcgaaaaggt tcgtgcagag
     1081 aagaacccaa acatcggcta taacgcagtg accgaaaagt ttgaagatct tgtggctgcg
     1141 ggtgtgattg atcccgccaa ggtgacacgt tgcgcactgc aaaatgccgc gtcaatcgct
     1201 gggctgatgc tcacgactga agcactcatt tctgagctac aggatgatga caagccgagg
     1261 gcattgcccg gcggcatgga catgtaattc ggtggcaaat tgggaagcca acatgttcac
     1321 caaggcggct tctgttaact caccaaagga gaagtcttct cgaagtgaga aaccctgtag
     1381 aggggaaaag gtaagaaact tatgtctatg aaactttatg tcggtaatct ctcgtttgaa
     1441 acgtcgagca atgaactaca aacattattc gcgcaaacgg gcacagtcga
//
LOCUS       DATCGC010000825         1191 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_145307, whole genome shotgun sequence.
ACCESSION   DATCGC010000825 DATCGC010000000
VERSION     DATCGC010000825.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1191
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145307"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1191
                     /locus_tag="VIJ87_07985"
     CDS             <1..>1191
                     /locus_tag="VIJ87_07985"
                     /inference="COORDINATES: protein motif:HMM:NF013126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HEY5444391.1"
                     /translation="GRQPLWPRFWETFGEDPYLAKVMGAAFVRGVEGDDVSSSKSVAT
                     SLKHYVGYSFPLTGRDRTPAWIPENYMREYFLPPFAAAVKAGARTIMVNSAEVNGVPG
                     HVNYHLLTEVLRNELGFDGFVVSDWQDIKKLVTEWRVAADEKEATRQSVMAGIDMSMV
                     PQDYSFSDLLLELVKENKVPMSRIDEAVSRILLVKYQLGLFDHPMPDASLKANFATAG
                     SRAIALEAARESLTLLKNEGSILPLTTSRKILVTGPTADSLISLNNGWTYVWQGNNIA
                     LYPKDRPTVLGAIRAKAGDKVTYVPGVAFDKEIDIEAAVKAAASADVVVVCIGESSYT
                     ETPGNITDLTLSEPQLRLAERIQATGKPVVLVLVEGRPRVINRIVEGAKGILLAYNPS
                     NEGGS"
BASE COUNT          287 a          292 c          334 g          278 t
ORIGIN      
        1 ggtcgccaac ctctctggcc acgcttctgg gaaacctttg gcgaggatcc ttatctcgcg
       61 aaagtcatgg gcgcggcgtt cgtgcgtgga gttgaaggtg acgacgtttc ttcttcaaag
      121 agcgtcgcga cttcgttgaa gcattacgtt ggttatagtt ttccgctgac gggtcgcgat
      181 cgcacacccg catggattcc ggagaattac atgcgcgaat actttctccc accgtttgct
      241 gccgctgtaa aagccggcgc gcgcaccatc atggtcaatt cggcggaggt caatggagtt
      301 cccggacacg ttaattatca tctcctaaca gaggttcttc gcaacgagtt gggctttgat
      361 ggattcgtag tttcagactg gcaggacatc aagaaactcg tgactgaatg gcgcgtcgct
      421 gctgacgaaa aagaagcgac ccgacaatcg gtgatggcgg gcatcgacat gagcatggtg
      481 ccgcaggatt acagtttcag cgatctcctg ttggagctcg tcaaagaaaa caaagtgccg
      541 atgtcgagaa ttgacgaggc tgtctcacgc attctgctcg tcaagtacca actcggattg
      601 ttcgatcacc cgatgcccga cgcttcgtta aaggcaaact ttgctacggc cggttcacga
      661 gcaattgcgt tggaagcagc acgcgaatct ctgacgctgt tgaagaatga aggttcgatt
      721 cttcctttga ccacaagtcg gaaaatcctg gttaccggac ctactgccga cagtctcatc
      781 tcactaaaca atggctggac ctacgtctgg caaggcaaca acattgcact ttatccgaaa
      841 gatcgaccaa ccgttttagg agcgatacga gcgaaggccg gggacaaggt gacttacgtc
      901 cctggtgttg ctttcgacaa agagatcgac atcgaagcgg cggttaaggc tgcagcgtcg
      961 gctgatgtgg tcgttgtttg tatcggtgaa tcgtcataca cagagacgcc aggaaacatc
     1021 actgacctga cgctgagcga accacagtta agattggctg agcgtattca agcaaccgga
     1081 aagcctgtgg tgttggtatt ggttgaggga cgcccgcgcg taatcaatcg cattgttgaa
     1141 ggagcaaagg gaattctgct ggcctataac ccgagtaatg aaggtgggag c
//
LOCUS       DATCGC010000826         1892 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_245139, whole genome shotgun sequence.
ACCESSION   DATCGC010000826 DATCGC010000000
VERSION     DATCGC010000826.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1892)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1892)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1892
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245139"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1629
                     /locus_tag="VIJ87_07990"
     CDS             <1..1629
                     /locus_tag="VIJ87_07990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444392.1"
                     /translation="LGQPQGSLFAGRSPIKHVIYLIKENRTYDQVFGDVEKSGDGTKA
                     DGDPTLAIFGAGVTAARPDGTKQNITPNHHALAQRFGLFDRFFVNSEASPDGHNWATA
                     AFSTDYLDKAYRWNYSSRGRTYDYEGFNRLPNYEPLRNSPSMFGPEVNAEQVANYLRR
                     FIPYLHGSRDVTEPQTLYLWDAAARAGLTYRNYGEFIATVSEADVKAIKDNRAKSYPD
                     LTPNASAIPTKKSLEGHYSEAYRNFDLDTPDSMTIDSYRAAKESWGKTSPFINSAHIE
                     EKFRGNSRIGIWLDEFRVIAAERAGGKPDRLPNLSTVRVSNDHTDGLASRKPTPQFYV
                     ADNDYAVGLMVEAVSNSVYWKDTAIILVEDDAQDGPDHVDAHRSVALVISAYNRPGAL
                     IHEFHNTVSLIRTIEMLLGIQPMNQLDATAIPINIFRSEADLRPYQAVLPEVALDNLT
                     NQPRDAVTAYWMRETEGQDLTHADMADPYVLNQIIWFSVRPERPMPGICRLPAFDAMR
                     LGVSEEEEERIAGSGREEDGHERVADKKTRDRDE"
BASE COUNT          478 a          475 c          529 g          410 t
ORIGIN      
        1 cttggccaac cacagggcag tttgtttgcc ggacgatcac caatcaaaca cgtcatctat
       61 ttgatcaaag agaaccgcac gtatgatcag gtctttggtg atgtagagaa gtctggagat
      121 ggcacgaaag cagacgggga tcccacactg gcaatttttg gtgcaggtgt tactgccgca
      181 cgacccgacg gaactaaaca gaacatcacg ccaaatcatc atgcgttagc tcaacgattc
      241 ggtttgttcg accggttctt cgttaactct gaagcaagcc ccgacggtca caactgggcg
      301 actgcggcat tttccaccga ctatttagat aaagcttatc ggtggaatta cagcagtcgc
      361 ggtcggacct acgactatga gggtttcaat cgcctgccga actatgagcc gctccgtaac
      421 tcgccgtcga tgtttggacc tgaagttaac gcggagcaag tagcgaacta cctgcgacgt
      481 tttatcccgt atctgcacgg ctcgcgtgac gttaccgagc cgcagacgct ttacctgtgg
      541 gatgcggctg cccgcgcagg actgacgtat cgaaattacg gcgagtttat tgcgacggtt
      601 tctgaagcgg acgtgaaagc gatcaaagac aaccgggcga agtcgtatcc ggatttgacc
      661 ccgaacgctt ccgccattcc cacgaagaaa tcgttggaag gtcactacag tgaagcctac
      721 cgaaatttcg acttagacac tcccgattcc atgaccatcg actcttaccg tgccgcgaaa
      781 gaatcgtggg gcaaaacaag cccgttcatc aatagcgcgc atattgaaga aaaattcaga
      841 gggaactctc gaattggaat ctggctcgat gagtttcgag tgatcgcagc tgagcgagcc
      901 ggcggcaaac ctgatcgact cccgaacctt tcaaccgttc gagtctcaaa cgatcacacc
      961 gacggtttgg catcacgaaa gccaacgcct cagttttatg tcgcagataa cgattacgcc
     1021 gttggtctaa tggtggaagc ggtttcaaat agcgtctact ggaaagacac agcgatcatc
     1081 ctggttgaag acgatgcgca ggatgggccg gaccacgtcg acgctcaccg gtcagtggcg
     1141 ctggtgatca gtgcgtacaa tcgacccggc gcgttgatac atgagtttca caacacggta
     1201 agtttgatac gaacgatcga aatgctgctc ggtattcagc cgatgaatca actcgatgcc
     1261 accgcgattc caatcaatat ctttaggagt gaagccgatc tgcgtccgta ccaggctgtc
     1321 ctacccgaag tagcgttgga caatctgacg aaccaaccgc gagatgcggt cactgcctac
     1381 tggatgcgag agacagaggg gcaagacctg actcacgccg acatggccga tccgtatgtg
     1441 ttgaatcaaa tcatctggtt ttcagttaga cctgaaagac caatgccggg catctgtcgc
     1501 ttgcccgcgt ttgacgcgat gcgattgggc gtgagcgaag aggaagaaga acggatcgcg
     1561 ggatcgggcc gagaagagga tgggcatgag cgggttgcgg acaagaagac acgcgatcga
     1621 gatgagtaga gaagaataat tttccataag tcatttgaca tttttcagtt ggtgatttga
     1681 ttgcgagcaa agctcagggc gcctcagtgg attgaacaag ctgggaaggg gcgggcgcct
     1741 cagtgggtcg aacaagcttg gaagggggca gcggtgattt ggacgcgatt cacttttagc
     1801 cccgagcgtg cccccgctga gtcgcaattt gaaaatctga gctggtacaa gtgaatctca
     1861 gcgggggcac gctcggggcc tcatttgcta cg
//
LOCUS       DATCGC010000827         1882 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_179293, whole genome shotgun sequence.
ACCESSION   DATCGC010000827 DATCGC010000000
VERSION     DATCGC010000827.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1882)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1882)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1882
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179293"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            256..>1882
                     /locus_tag="VIJ87_07995"
     CDS             256..>1882
                     /locus_tag="VIJ87_07995"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEY5444393.1"
                     /translation="MLFRLSEVYKSYGVQDVLRGTTLQINPGEHVGLVGRNGAGKSTI
                     FRLVRGEESADKGEVVKARGVRLGLLDQHVHFEPGSTVHESALAAFGHLQQIEHEMHE
                     LEHRMADAGDELEKILERYSDLQHQFEHEGGFEYAAKAEAILQGLGFERETWSMETSK
                     LSGGQQNRLGLAKLLLAAPDVLLLDEPTNHLDVHAVEWLEEFLQTYEAGYVIVSHDRY
                     FLDRACRRIIELENGKAASYTGNYSAYLVEREERREAQQRAYDNQQQLIAKTEEFIRR
                     NLAGQKTKQAKSRRTMLQKLERLDSVRPDQSSGDFRLQAIERTGNHVLTINELVVGYP
                     NNELAGVISFILRRGECLGIIGPNGSGKTTFLKTILSKLPALRGDVRWGTKVQVGYYA
                     QQLDDLDDRNEIIMELRRVAPASATAGELRSFLAKFLFTGDDVYKHVRDLSGGEKGRL
                     ALAKLIYSRVNVLVLDEPTNHLDIPSREALEEALSAYEGTIITISHDRYFLDRVATQI
                     LSLDGLGHAEHYDGDYTEYHDWKLGGGKTQSQKH"
BASE COUNT          475 a          477 c          503 g          427 t
ORIGIN      
        1 taacctggcg gcatcgatgc tgaacaaccc tggcaatctt ggattgagac cggcagctcc
       61 gggttcacag ccttccgctc cgcagccagc tcagcaggca tctccagctc ccagcagttc
      121 tacgagtact gtcaaacctg cgggatcgcc caagtaggat ttattagttc aaaccctttc
      181 gcgggtgttg gaggctacat cagctccgca cccgcgtagt attgtgacga ggccgcgcct
      241 cagacgaatt cagaaatgct gttccgctta tcagaagtct acaagtcgta tggagtgcaa
      301 gacgtgcttc gcggcacaac tctgcaaata aaccccggcg agcatgtagg acttgtaggt
      361 cggaacggag caggtaagag cacaatcttt cgtctggtac gtggagaaga gtcagccgat
      421 aaaggagaag tggttaaggc gcgaggggtt cgtcttggct tgctcgacca gcatgtacac
      481 ttcgagcccg gttcgaccgt acacgagtcc gcgctcgctg cttttggcca tctgcagcag
      541 attgaacatg aaatgcacga gcttgaacat cgcatggccg acgccggaga tgagctcgaa
      601 aagatcctgg aacgctacag cgatctgcag catcagttcg aacacgaagg cggttttgaa
      661 tacgcagcga aagcagaagc gattttgcag ggactgggct ttgaacggga aacctggtcg
      721 atggaaacct ccaagctctc tggcggacaa caaaatcgtt tgggtctcgc gaagttgttg
      781 ttggccgctc cggatgtatt gcttttggac gagccgacaa atcacctgga cgttcatgcc
      841 gtcgaatggc ttgaggagtt tttacaaacc tatgaggcag gctacgtcat tgtaagccac
      901 gatcgttatt tcctcgatcg cgcatgccgg cgaattattg agctggagaa cggaaaggcc
      961 gcgagctata ccggcaacta ttcagcctac cttgttgagc gcgaggaacg tcgcgaagca
     1021 caacaacgag cctacgataa ccaacagcag ctcatcgcaa aaacagaaga attcattcgg
     1081 cgaaatcttg caggacaaaa aactaagcaa gcaaagtcgc gccgaacgat gctgcaaaaa
     1141 ctcgaacggc tcgactctgt tcggcctgat caatcatctg gtgattttcg tctgcaagcg
     1201 attgaacgaa ctggaaatca tgttctgact attaacgaat tggttgttgg ctatcccaat
     1261 aatgaactgg ctggagtcat ctctttcatt ttgcggcgag gcgaatgcct tgggatcatt
     1321 ggcccgaatg gatcaggaaa gactaccttc ctcaagacaa ttctaagcaa acttccggcg
     1381 cttcggggtg atgtcaggtg gggaactaag gtacaggtcg ggtactacgc gcaacaactc
     1441 gatgacttag acgaccgcaa cgagatcatt atggagttac gtcgagtagc gcccgctagt
     1501 gccacagccg gcgagcttcg ttccttcctc gcaaaattcc tgtttactgg tgatgacgtt
     1561 tacaaacacg tgcgcgatct ttccggtggc gagaagggca gactggcact cgcgaagttg
     1621 atctactctc gagtgaatgt tctcgttctt gatgagccca ctaatcacct cgatatccca
     1681 tcgcgtgaag cgctcgagga agctctctcg gcttacgagg gcacgattat taccattagc
     1741 cacgatcgat actttctgga tcgagttgcg acgcagatcc tctcgttgga cggtttgggc
     1801 cacgctgaac attatgatgg cgactacacc gagtatcacg attggaaact tggtggtgga
     1861 aaaacccaat ctcaaaagca tt
//
LOCUS       DATCGC010000828         1792 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_377525, whole genome shotgun sequence.
ACCESSION   DATCGC010000828 DATCGC010000000
VERSION     DATCGC010000828.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1792
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_377525"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..901
                     /locus_tag="VIJ87_08000"
     CDS             <1..901
                     /locus_tag="VIJ87_08000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444394.1"
                     /translation="SKPGEKKKLIWAAALGFLAILFLWWTFVGFGSASTPSRPSNPSQ
                     PPQNAPRGVNQRPTVEQSKSPQVINIADLVLPQHQIQVPVVPEPRRNIFAYYEPVQVK
                     VEVPPPTPTPPPPPPPVLLAAISPSNVYAKTTEFTMELSGDKFTPEMRVYVDERELPT
                     KYKGPQQMSATIGTAIIATPGIRQFKVRTPDGRVYSNQIQLSVAPPPTPNYAYVGIWG
                     TRHYVNTALLQDKNNKEILSVQLGDLLSGRFRVTSISDKEIVFVDTNLKIKHSLAMTE
                     GERTAGSPIARPTPRVDSEDDEP"
     gene            957..1619
                     /locus_tag="VIJ87_08005"
     CDS             957..1619
                     /locus_tag="VIJ87_08005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444395.1"
                     /translation="MSVNNRPIDHSEGGYTLVALLALMTLLALFAMAVAPSIQQQTER
                     EKEKEAIFRGEQVADAIRDYYRYRNRLNGVIGDQALPTSMDQLLEGLPIPGGSKTRQI
                     LRASAARDPLSLEGEWRFIHPRSEPLIDFQQAVMAYAGTVVPTPKDPQMIQLQQFAVP
                     AMTSVLNTGTTSKSTSSSSAGDDSSGPFVGVASRSRRDSVLTYYGIESHDGWIFTPLF
                     RN"
BASE COUNT          461 a          469 c          440 g          422 t
ORIGIN      
        1 tagtaagccg ggagaaaaga agaagctgat ctgggctgcg gccctaggct ttctagcgat
       61 tcttttcctt tggtggacat tcgttggctt tggcagtgcc tcaacgccat cccggccatc
      121 taatccgtct caaccacctc agaatgcgcc tcgtggcgtg aatcagaggc caacggtaga
      181 acaaagtaaa tctccgcagg taatcaatat tgccgacctc gtactaccgc agcatcagat
      241 tcaagtgcca gttgttcccg aaccaagaag gaacattttt gcctactatg aaccggtgca
      301 ggtgaaagtc gaggtgccgc caccgactcc aacgccgcca cctccgccac ctcctgtatt
      361 actcgcggcg atttctccgt caaacgtcta cgcaaagaca acagaattta cgatggagct
      421 ttctggtgac aagttcactc cggagatgcg cgtgtacgtt gatgaacgtg agctcccgac
      481 aaagtacaag ggaccgcaac agatgtcggc cacgatcggg acggcaatca tcgcaactcc
      541 cggtatccgg cagttcaaag tgcggactcc cgacggtcga gtgtattcca atcagatcca
      601 attgagtgtt gccccccctc cgacgccgaa ttatgcctac gtgggcatat ggggaacgag
      661 gcattacgtc aacactgcgc tgcttcagga taagaacaac aaagagatcc taagcgtaca
      721 gttgggtgat cttctaagcg gcaggtttcg tgtgacgagt atctcagata aggaaatagt
      781 tttcgtcgac acgaatctta agattaaaca tagcctggct atgactgaag gagaacgcac
      841 cgcgggatct ccaatcgctc gtcctacacc tcgagttgac tcagaagatg acgaacccta
      901 acgccgaacg tgaccacaat atattagggt gcggacaaat tcgctcaaac caagatttgt
      961 ctgtcaacaa tcgccctatt gaccattctg aaggtggcta caccctcgtt gcgctactgg
     1021 ccttgatgac tctattggct ctctttgcaa tggccgttgc tcccagcatc cagcaacaaa
     1081 cggaacgaga gaaagagaaa gaagcaatct ttcgtggtga acaagttgcc gatgcgatcc
     1141 gcgattacta tcgctatcga aacagattga atggagtgat tggcgatcaa gcgttgccta
     1201 catcgatgga ccaactgctt gaaggactac ccataccagg tggttcgaag acgcgacaga
     1261 ttttgcgcgc aagcgccgcg cgcgatccgc tttcccttga aggtgagtgg agatttattc
     1321 atccgaggtc cgagccatta atcgattttc agcaggccgt aatggcgtat gccggaaccg
     1381 tagtgcccac cccgaaagat ccgcaaatga ttcagctgca acagtttgca gtccccgcca
     1441 tgacaagtgt gctaaatacc gggaccactt cgaagtcgac aagttcgtcg tcagctggcg
     1501 atgattcgag tggaccattc gttggtgtcg cgagtagaag tagacgagac tcagtgctta
     1561 cgtactacgg aattgagtct cacgatggat ggatcttcac tcctctcttt cgtaattgaa
     1621 tcttggacca cgtgcttcat cttcatttcc taaatccaaa attctgacaa gagttagatc
     1681 ttgaatacac ggtctcgtca atcgttttta gattgcgacg aacacgagcg atcagtctct
     1741 ctagtcgctg cgtctgcgat cggatcatgt gtgttcagac ctccaaaatg at
//
LOCUS       DATCGC010000829         1029 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_145370, whole genome shotgun sequence.
ACCESSION   DATCGC010000829 DATCGC010000000
VERSION     DATCGC010000829.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1029
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145370"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..990
                     /locus_tag="VIJ87_08010"
     CDS             <1..990
                     /locus_tag="VIJ87_08010"
                     /inference="COORDINATES: protein motif:HMM:NF025115.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4163 domain-containing protein"
                     /protein_id="HEY5444396.1"
                     /translation="SLVLLFLSLAPSALAQTIKTYRGSLGNKHIEMRLTVEGNKVTGS
                     YFYDQFKQDIPLEGAFDSKGTLQLAEGKGKTKTGKFVCKNQLSTVEVSECEWSRMDGT
                     GQAFVFLTEQGIQFKEAIALTPKVLNDRKLKATVSYPQLTSQASSPAIEGFNSLVEKL
                     VQKSVKDFAENRDSNSVFEISYNVLLGSDNVVSVELEEYFDGGAHPTEHFSTVNYSLK
                     ANKQLTLADVFRPGDEYKQAIAEFAAKDINRRADEIERADAQRENRQPQKRDEQLMTD
                     DQLPEMDTWGLSPKGFVVYFDFPHVMAVFDKTVVPYGMLARHLSPTGVVPIVR"
BASE COUNT          277 a          221 c          280 g          251 t
ORIGIN      
        1 tctctcgtgt tgttgtttct ctcgctggcg ccgtcggctt tggcccaaac cataaaaacc
       61 taccgcggaa gtctcggcaa caaacatatc gaaatgcgtt tgaccgtcga gggcaacaaa
      121 gttactggaa gttattttta cgaccagttc aaacaagaca ttccgttgga aggggctttc
      181 gattcaaaag gcacgcttca acttgctgaa ggtaaaggaa agaccaaaac aggaaagttt
      241 gtatgcaaga atcagctgtc aaccgttgaa gtcagtgaat gtgaatggtc tcgaatggac
      301 ggaactggtc aggcgtttgt ctttctcacc gagcagggaa ttcagtttaa agaagcaatc
      361 gcgttgactc ccaaggtcct caatgatcgg aaactaaaag cgacggtttc ttatccgcag
      421 ctgacgtctc aggctagttc gcctgcgatt gaaggtttca atagcctggt tgagaagctt
      481 gttcagaaat cagtaaaaga ttttgccgag aatcgcgatt cgaattctgt cttcgagatt
      541 agctacaacg tcctgcttgg tagtgacaat gtggtgagtg tcgagctgga agagtacttt
      601 gatggcggag cgcatcctac tgaacatttc tcgaccgtca attacagcct gaaagccaac
      661 aagcaactga ctctggccga tgtcttcaga cctggcgatg agtacaagca ggcaattgcg
      721 gagtttgcgg caaaagacat taaccggcga gcggatgaga tagaacgagc agacgcccag
      781 cgcgagaata gacaaccgca gaaacgagac gagcagttga tgacagacga tcaactaccg
      841 gaaatggaca cctggggttt gagtccaaaa ggtttcgttg tctatttcga tttcccgcac
      901 gtgatggcag tgtttgataa gacggttgtg ccatatggaa tgcttgcccg gcacctgagt
      961 ccgacgggtg tcgttccaat tgtgagatga gtgatattgg ggcggcgagt tgattagcgt
     1021 ggctttgga
//
LOCUS       DATCGC010000830         1217 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_344122, whole genome shotgun sequence.
ACCESSION   DATCGC010000830 DATCGC010000000
VERSION     DATCGC010000830.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1217)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1217)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1217
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_344122"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(147..503)
                     /locus_tag="VIJ87_08015"
     CDS             complement(147..503)
                     /locus_tag="VIJ87_08015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444397.1"
                     /translation="MEFVPLVAMGALVFTLVNFLRYLTNGDVKSAITQLVSWAAGVLV
                     VLLVAQTDFADGISVGGQALSVLNFYSLLFVGLQASSIFGFGQKALQSIDNTQTSRVP
                     SLVPDGVPPHDEALNP"
     gene            complement(516..1175)
                     /locus_tag="VIJ87_08020"
     CDS             complement(516..1175)
                     /locus_tag="VIJ87_08020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444398.1"
                     /translation="MADTSDEHPITGENPAIVSNAGIVEHAEIVSHTEKVEHVEVHGE
                     PLRSDKERRLSHLRDIARTAVMFFALLVMIVVIFDKNANENKLEKQLTELRSSRVEAD
                     KVTSAKLDCVRRYTDITDTYRSKQLVLISDFLIAITQIPPGPDRVAAVNEKITELEDT
                     NEEAKAAIASKINYTNSGNKLPCPISETPNPINDNLPPEVAEVIPTTTSILPTSSPPN
                     P"
BASE COUNT          354 a          271 c          262 g          330 t
ORIGIN      
        1 acaaccaaag aacagcgtag caatcgctag cattccaaga agagattcag tgccgggaag
       61 atcccaaatc aatgatccta cgaaatatag agtagcgata gcaggaagcc aaatatgaac
      121 tagtacacgg agtctcttaa tggttctcac ggattgagag cctcatcatg gggcgggacg
      181 ccatcaggca ccaaggaggg cactctagaa gtctgcgtgt tatcaatcga ctgaagagcc
      241 ttctgaccaa agccgaagat cgacgaggcc tggagaccaa caaatagaag cgaatagaag
      301 ttcaagacgc tcaaagcctg accaccaacg gaaataccgt cagcgaaatc agtctgagcg
      361 acaagaagaa ctactaggac tccagcagcc catgaaacga gctgggtaat ggcagactta
      421 acgtctccat tggtgaggta gcgcaggaag ttcacaagtg tgaacaccag tgcacccatt
      481 gctacgagag gaacgaattc cattgttttt tctccttacg ggtttggggg actagatgtg
      541 ggtagaatgc ttgtcgtagt tggtattact tcagctactt ctggcggcaa attgtcatta
      601 ataggatttg gagtttcact tataggacaa ggaagcttat tcccactatt agtgtaatta
      661 atctttgaag caattgctgc ttttgcttct tcattagtgt cttctaattc ggtaattttt
      721 tcatttacag cagctactcg atcgggtcca ggtggaatct gtgtaatggc gataagaaaa
      781 tcgctaatca gaaccaactg ttttgatcga tatgtatcag taatatcagt ataacgacgt
      841 acacaatcca atttagccga agttacttta tctgcttcga ctctagaaga tcgtaattcc
      901 gttaactgct tttccaattt attttcattg gcgttcttgt cgaaaatcac cacgatcatt
      961 actaacaatg caaagaacat aactgctgta cgagcaatgt cacgaagatg tgacaatcga
     1021 cgctctttgt cactccgcaa tggttcacca tgcacttcca catgttcaac cttttcagta
     1081 tgactgacaa tttcggcatg ttcgacaatg ccggcatttg atacaattgc tggattttca
     1141 ccagtaatcg gatgttcatc acttgtatct gccatcgatc aactcctcta tctgagcatg
     1201 tagctctgcc acctctt
//
LOCUS       DATCGC010000831         1307 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_410570, whole genome shotgun sequence.
ACCESSION   DATCGC010000831 DATCGC010000000
VERSION     DATCGC010000831.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1307)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1307)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1307
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_410570"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            517..1134
                     /gene="rplC"
                     /locus_tag="VIJ87_08025"
     CDS             517..1134
                     /gene="rplC"
                     /locus_tag="VIJ87_08025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016293507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HEY5444399.1"
                     /translation="MKALITRKVGMTSTIADDGTVQAITLLSASPCVITQVKTDENDG
                     YTAIQIGFEEAKQQNVAKAQQGHFKAAGVLPKIIREFRVSEITEDLKVGEKINPEVFS
                     IGDEIDATGTSKGKGWAGTIKRHNFHRGRKTHGGRSYRRPGSIGSMYPQHIFKGKKMA
                     GQMGYEQVTVKNLKVALVDTELGVIGVTGAVPGPRKGIVVIKEAK"
BASE COUNT          368 a          318 c          327 g          294 t
ORIGIN      
        1 aacttatcag gtagctgggg cctttcccta ccacccaacg aaccattctc tcacggagct
       61 caagagcttc ttcaaacaat tctgtatcca tgaattgtac ttcgtagtca agttctgctt
      121 gtgattctga agacgcggct gcgtctggtg ggattactgt atcaacaagt gtaggatcgg
      181 taggggagga gaagtgttct ggagaagaca tagaatattt aaggatagca aaaatttgca
      241 ccagacaaaa tagcggtctg gcttgctaat tttggaatcg ttcgatcaac gccagaacca
      301 cccatgttaa tgtagaatag acaacggatt gacaggagta gcgtttgagt gctacactgt
      361 tgaggtataa caaattcctg tacttggtga tttgggaagg tccgatcgta acagatcaga
      421 aaccgctcgg agccgagcat ttttgtgtca gtcggcagaa aaatgaacgg caacaggtaa
      481 gaagtggcgg cggccaagcg ctcgcacgga gatactatga aagcattaat cactcgaaag
      541 gttggcatga ccagtaccat cgctgatgac ggtacggttc aagctatcac cttgctttcc
      601 gctagtccct gtgtcattac acaggtcaaa acagacgaga atgacggcta caccgctatt
      661 cagatcggtt ttgaggaagc aaaacaacaa aacgttgcca aagcacagca aggccacttt
      721 aaggcagccg gcgtcctccc gaagattatt cgtgagttcc gcgtttccga aatcactgaa
      781 gacctcaagg ttggcgagaa aatcaacccc gaggtctttt caattggtga cgaaatcgac
      841 gcaaccggta caagcaaggg taaaggttgg gctggtacca tcaaacgcca caacttccac
      901 cgcggtcgca agacgcacgg tggccgcagc taccgccgtc ccggttcgat cggttcgatg
      961 tacccacagc acattttcaa aggtaagaaa atggctggtc aaatgggtta cgaacaagtt
     1021 acggtcaaga acctcaaagt tgcacttgtg gacacagaac tcggcgtcat cggtgttacc
     1081 ggtgccgttc ccggcccacg caaaggcatc gttgttatca aggaggctaa ataatggctg
     1141 tttctaccta caccaagagc ggtacgaaag cagcaacggc tgcaaagctc gacaaatcag
     1201 tcttcgaggt tatgcctgaa aaccacgacc ttctgaaact cgcctacgtc gcgtacctcg
     1261 ccaacggccg tgaaaacctc gctgtcacca agactcgtgg tttagtt
//
LOCUS       DATCGC010000832         1372 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_445519, whole genome shotgun sequence.
ACCESSION   DATCGC010000832 DATCGC010000000
VERSION     DATCGC010000832.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1372)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1372)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1372
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_445519"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..709)
                     /locus_tag="VIJ87_08030"
     CDS             complement(<1..709)
                     /locus_tag="VIJ87_08030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444400.1"
                     /translation="MKVLFHTKRSQTLVQLQSLAMCLGVNSECINVGIVGSLLLAVRE
                     AILAKTRGIVLDVGSLKDKCDEAELRELAACLLRHKIVVLLLVSDVDQSATRFLSILT
                     NNAILGIEPIEQASRVNFPASSRALSKELSSYSYPRKSAKGISLILSSARKAQVVMTL
                     DVSPTFVCAGVGEANVFVWATDVVFNVSKLLTAEIEFEQATEQYIPAIIFLRFAFGER
                     CWHNPRPGAGFIIDDPLL"
     gene            complement(706..1227)
                     /locus_tag="VIJ87_08035"
     CDS             complement(706..1227)
                     /locus_tag="VIJ87_08035"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024812.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HEY5444401.1"
                     /translation="MDAITIEDLQVKDLSLVAEWLSRDKINRWLTTEWRNRVVSTTLI
                     AIALRNRKNRFFLVRCNGEACGLTALADIDVVDSTAMIWYVLGEPRFTRKGITSKAVR
                     HLVQKSFQELKLRSLYAWIMEDNAPSAKVLTAVGFREAGRIRQAVASNGHQVDRIYFD
                     LVLSDCPEFDFSQ"
BASE COUNT          359 a          378 c          305 g          330 t
ORIGIN      
        1 taagcagcgg atcgtcaatg atgaacccgg ccccggggcg aggattatgc caacaccgct
       61 caccaaacgc gaatctgaga aagatgattg cgggaatata ttgctctgtt gcctgttcga
      121 actcaatttc ggccgttaag agcttagaaa cgttaaagac tacatcggta gcccacacaa
      181 aaacgttcgc ttcacccacg cccgcgcaga cgaaagttgg tgatacgtcc aacgtcataa
      241 caacctgcgc ctttctggcc gacgagagga ttagacttat tcccttggct gattttcgcg
      301 gatacgaata tgagctcaat tctttgctca gcgcccttga actagctgga aagttcacgc
      361 ggctggcctg ttcaataggc tctatcccga ggattgcatt attcgtgaga atgcttagga
      421 atcgagttgc agattgatct acgtcagaaa ccaatagcag aacaacgatc ttatgcctga
      481 ggagacacgc cgccagttca cgaagttcag cttcgtcgca cttgtccttt agacttccga
      541 cgtccaacac gataccacgc gtttttgcca aaattgcttc tcttactgca agcagcagcg
      601 aacccacgat ccctacattg atacattccg aattaacacc gagacacatc gccagactct
      661 gtagctgcac gagcgtttgt gaccgcttag tgtgaaatag taccttcatt ggctaaaatc
      721 aaactcggga cagtccgaca gtactaagtc gaagtatatt cgatcgacct gatgaccgtt
      781 cgacgcaacc gcctgtcgaa tccgtcccgc ctcacgaaac ccaactgccg tcaatacctt
      841 agccgacggc gcgttatcct ccataatcca agcgtaaagc gatcgaagct tgagttcctg
      901 gaaggatttt tgcaccaaat gccttacagc ctttgaggta atcccttttc gcgtaaatcg
      961 cggctcacca agtacgtacc atatcattgc agttgagtct acaacgtcga tatcagccag
     1021 agcagttaga ccgcatgctt cgccattgca acggactaag aagaaccggt tcttgcgatt
     1081 tcgcaatgca atggcgataa gcgtagtaga gacaactcgg ttacgccatt cggtggttaa
     1141 ccagcggttg atcttgtctc gcgaaagcca ctcagcgacc agactaagat ctttgacctg
     1201 aaggtcctca atggtaattg cgtccattaa agtcgccgtt cgtgtaattt tcgaactcct
     1261 tcctcaacgt ctctggccat tctttaagat caaaaccaaa ttgactgaaa atcgcgtaga
     1321 cccagcgctc gtaaccccac ccaacgcagg cgctcgttgc cggtcggccg tc
//
LOCUS       DATCGC010000833         4437 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_410572, whole genome shotgun sequence.
ACCESSION   DATCGC010000833 DATCGC010000000
VERSION     DATCGC010000833.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4437)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4437)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4437
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_410572"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..956)
                     /locus_tag="VIJ87_08040"
     CDS             complement(<1..956)
                     /locus_tag="VIJ87_08040"
                     /inference="COORDINATES: protein motif:HMM:NF020037.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HEY5444402.1"
                     /translation="MADTVQAGSVVGVFTTDSDLRIKVWDNALARFTGVSADQARGKL
                     IQELFIEIETRGLHKKLENALRDGTVEVLAPAFHRYLIPCPPQTPSTRFDTMLQRTTI
                     VPVVENDAIVGVLVTIEDVTTRVERERELNELLNSNDAETRLRATEALAQSTEVEDEL
                     GLLSAVGDSDWRVRQVAVQGLAQRSAPEAIQALLESLREDHGNLAVLNSALQVLTMVD
                     IETLPTLVEFLHDANADLRMQAALALGEQRDKRAVPALLEALNDSDPNVRFHVIEALG
                     KLRDPAGVVPLATIAESEDFFLSFPALDALKQIGDSSITPKL"
     gene            complement(1006..3201)
                     /locus_tag="VIJ87_08045"
     CDS             complement(1006..3201)
                     /locus_tag="VIJ87_08045"
                     /inference="COORDINATES: protein motif:HMM:NF012245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEY5444403.1"
                     /translation="MSSEVRAPEKRNVGFAIADVRSQAEEVFNAANTVKQIADEVVSG
                     ATSQAVSLSSALERSNHLTTSLQEATTQATSIISSVEQIAASMTETAVSIEQVTGNAG
                     SLASSVNENAAAIEESASSIKNVTESVQEMSAAAESVSAAAMELNASIKSVVAETETL
                     TSSINETAAAMEETARSNQGLVENADDLTVAAEETSAAIGEMGASIEEVASMSENLAS
                     SVDEVSTSMEEIARSIQGVSQNVERISGDTAGAATTAAEMDRSLQSVVSMAQNANEIT
                     TRVARDAAEGGAMARTSIEGAGRVRDAINQAATVIREMGKRSNEIGSIVNTINIIAER
                     TNMLSLNASIEAARAGEAGRGFAVVAEEIRNLADRSAQATADIAQIIQAVQEVTQEAI
                     KVTAEGVRMADEGNRLAEDGLKGLEKILDGVSQTTKLVSQITKATEEQLGAGQDVRRS
                     IDSVASQSKHAAAASEEQSSTAQRIVQSAAGMRKVAKEVNQAMAEQARAAREIIKASQ
                     SATKIASQVRKATSEQSAGAQQIAAALNSMRRGASSTFKALQEQSAASQQVSNDTVKL
                     TSLISIVSKATSEQAISANQISRETDGMKQQSEQVARAMAEQARAMKDTRDATQNISQ
                     QVQQIMKANVEYTASADSIRVSLAETRSITDRNARTANDAIQATTSLLGAAQQLSIIM
                     DQIEKGGLGSNGSTDLSNRKRRPRKNEPRDGLGNHESRTDEPPIQRTES"
     gene            complement(3256..3732)
                     /locus_tag="VIJ87_08050"
     CDS             complement(3256..3732)
                     /locus_tag="VIJ87_08050"
                     /inference="COORDINATES: protein motif:HMM:NF013731.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HEY5444404.1"
                     /translation="MTSTSPASASEQYVLFELVNTAYAVRSSAVSRLEMVENVTPVPN
                     ATESLEGVVLSRGRIIPAVNLRTRFGFSRIAYDLRTRLIVVEAEGRMVGLIVDAAREF
                     TTLAGSEIKPPPEAIANLNGDYLEGIANINGRVILVLKLEELLKIADEAPANEATN"
     gene            complement(3747..>4437)
                     /locus_tag="VIJ87_08055"
     CDS             complement(3747..>4437)
                     /locus_tag="VIJ87_08055"
                     /inference="COORDINATES: protein motif:HMM:NF013731.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HEY5444405.1"
                     /translation="GRGIDVEAIEESLGRELQTTDGEINFSELLKVISEPGFSTRKHA
                     DRASGRGVGMDVVSRSIKDLDGHLSMRTEPGVGTTFQIELPLTLAIADALIATVAGQT
                     FAIHRSSVQEVIEVDADSVKVFENNEIIIHREDVLPLVRLSSVFNLQGKKQGLLNAFV
                     IGTGAQATALVVDKVLGLREVVVRSLPDPLTAVPGVAGATELGDGKPVLILDIGEILD
                     SARHVPVSPRT"
BASE COUNT          896 a         1234 c         1128 g         1179 t
ORIGIN      
        1 atcagctttg gagtgatgct gctatcaccg atctgtttca acgcgtccag tgcagggaaa
       61 gagagaaaga aatcctccga ctcggcaatc gttgcgagtg ggactacccc ggcaggatca
      121 cgaagcttgc cgagtgcctc aatgacatgg aagcgcacgt tagggtctga atcgttcagg
      181 gcctccagga gtgcaggtac agctcgttta tcacgctgct ctccaagcgc cagagcagct
      241 tgcattcgca ggtcagcatt cgcgtcgtga agaaattcaa ccaacgttgg cagcgtctcg
      301 atatcaacca tcgtcagcac ttgaagtgcg ctgttaagaa ccgccaggtt gccatgatct
      361 tctcgcagtg attcaagcag ggcttgaatc gcctcaggag ctgaccgctg cgccagaccc
      421 tggacagcta cctgacgcac tcgccaatcg ctgtcgccaa ctgcgcttag taatccaagt
      481 tcgtcttcaa cctcagtgct ctgggcgagc gcttcggtgg cgcgtaagcg tgtttcagcg
      541 tcgttgctgt ttaggagttc gttgagttca cgttcgcgtt caactcgggt tgtgacgtcc
      601 tcgatagtga caagcacacc aactatcgcg tcgttctcga ctaccgggac gatagtcgtt
      661 ctctgcagca tcgtgtcgaa gcgtgttgac ggagtttgtg gcgggcaggg aattaagtaa
      721 cggtgaaagg ccggagcgag cacttcaact gtgccgtcac gcagggcgtt ttcaagcttc
      781 ttgtgtagtc cgcgggtttc aatttcgatg aagagttcct ggattagctt tccccgagct
      841 tgatccgcgg acacaccagt aaaccgtgcc agtgcgttat cccaaacctt gattctgagg
      901 tctgagtcgg tagtgaaaac tccaactacc gatccagcct gaacggtgtc tgccattatt
      961 tacttcggtg tgttcagagg actaagcctc gactcgtcac cgttctcagc tttcggttct
     1021 ctgaataggg ggctcgtctg tcctcgattc atggttgccg aggccgtcgc gaggttcgtt
     1081 cttacgtggt cgtcttttcc tgtttgatag atctgtagag ccgtttgagc ccaggccacc
     1141 cttttcaatc tggtccatta ttatcgaaag ctgttgcgca gctcccagaa gcgaagttgt
     1201 tgcttgaatg gcgtcgttcg ctgtcctcgc attgcggtcg gttatgctgc gggtctctgc
     1261 cagtgataca cggatcgaat ctgccgaggc agtgtattcg acgtttgctt tcatgatttg
     1321 ctggacttgc tgggaaatat tctgtgtggc atctctcgtg tctttcatgg cacgagcctg
     1381 ttcggccatt gcccgggcaa cctgttcaga ctgttgcttc atgccatcag tctcacggga
     1441 tatctgattc gccgaaatag cctgttcgct tgttgctttg cttacgatcg agatgagact
     1501 cgttaacttc actgtatcgt tagatacttg ctggctcgct gctgattgtt cctgcaacgc
     1561 tttgaacgtt gaagatgcac cgcgccgcat tgaattcagc gcagcagcta tctgttgtgc
     1621 cccggcagat tgttcagaag tagcctttct cacctgagac gctattttgg tagcgctttg
     1681 tgaagcttta attatttcgc gagcggcgcg cgcttgttct gccattgcct gattaacctc
     1741 tttagcgact ttgcgcattc cggcagccga ttgcacgatc ctctgggcgg ttgacgactg
     1801 ctcttcactt gcagcagcag catgctttga ttgtgaagct acagaatcga ttgaccgtct
     1861 tacatcctgc ccagctccca gttgttcttc cgtcgcttta gtgatctgac taaccagctt
     1921 tgttgtctgg ctaactccgt cgagaatctt ctcgagtcct ttcaaaccat cttccgcaag
     1981 gcgattgcct tcgtcagcca ttcttacgcc ttcggccgtt accttgattg cttcctgggt
     2041 cacttcctgc acagcttgaa taatttgagc aatgtcggcg gtggcttgag ctgatcgatc
     2101 cgccaggttg cgaatttctt cggcaacgac tgcgaaccct cggccagcct caccagctcg
     2161 agctgcctcg atcgacgcgt tgagtgaaag catgtttgtg cgttcggcaa tgatgttgat
     2221 tgtattgacg atgctgccaa tctcattcga ccgctttccc atttcacgaa tcacagttgc
     2281 ggcttgattg atagcgtcgc gcactcgtcc agcgccttcg atagatgtgc gcgccatcgc
     2341 gccgccttct gcagcgtcgc gcgcgaccct ggtcgtgatc tcattcgcat tctgagccat
     2401 cgatacaacc gactgcagcg atcgatccat ttcggctgca gtagttgctg cgccggccgt
     2461 gtcgccgctg atccgctcta cattctgcga tactccttga attgagcggg caatctcctc
     2521 catcgaggtc gatacttcat caacagacga cgcgaggttt tctgacatcg aagcgacttc
     2581 ttctattgat gcccccattt caccgattgc tgcggatgtc tcttcggcgg ccacggtgag
     2641 atcgtcggcg ttttcgacga gtccttgatt agatctcgcc gtctcctcca tcgccgctgc
     2701 tgtttcgttg atcgaagacg tcaaagtctc tgtttcggca accacgctct ttatcgaggc
     2761 gtttagttcc atcgccgcag cggaaacgga ctcagctgct gcactcatct cctgaaccga
     2821 ttctgtaacg tttttgattg aggacgccga ctcttcgatc gcagcagcgt tttcattgac
     2881 cgaggaagcc aggctcccgg cgttgcctgt aacttgttcg atcgagactg ctgtctctgt
     2941 catcgaggca gcgatctgtt cgacagagct gataatagaa gtggcctgcg ttgtcgcttc
     3001 ttgcagcgaa gtggtcaaat ggttgctccg ctccaaggca gaactcagcg atacagcttg
     3061 cgaagtcgct ccactgacta cctcgtcagc gatctgctta actgtgttcg cggcgttgaa
     3121 tacctcttct gcctggctcc gaacgtcagc gattgcaaaa ccgacatttc gtttctcagg
     3181 ggctctcact tctgacgaca tatctgactc cttagaattt gcgcgctcag cacagcgcac
     3241 tgttttgtag aactactagt ttgtcgcttc gttggccggg gcttcgtcag cgatctttag
     3301 aagttcctcc agcttcaaaa ccagaatcac tcgcccatta atgttggcaa taccttccaa
     3361 atagtctcca ttgagatttg cgattgcctc gggtggaggc ttgatttccg aaccggccag
     3421 ggtagtgaac tcgcgcgctg cgtcgacaat caggccaacc attcgacctt cagcttcgac
     3481 aacgatcaag cgtgtgcgca aatcgtaagc aatccttgaa aaaccaaaac gcgttcgcaa
     3541 gttgactgcc ggaatgattc gaccacgtga gagcaccaca ccttcgagtg actccgttgc
     3601 attcggaacc ggagttacgt tttccaccat ctcaagccga ctaacggcgg aacttcttac
     3661 ggcgtacgcc gtgttcacga gttcaaacaa cacatactgt tcagacgccg atgccggcga
     3721 tgttgatgtc ataacagtct gacccttcag gttcttggcg aaaccgggac gtggcgagca
     3781 gagtcaagaa tctccccgat atcgagaatt agaactggtt tgccatcacc gagttcagtc
     3841 gcccctgcga ctcccggaac ggccgtcaat ggatcaggaa gcgaacgaac gacgacttct
     3901 ctgaggccca atactttgtc gaccacgagc gcggttgcct gcgcgcccgt cccaattaca
     3961 aatgcgttca gcaaaccttg tttcttgccc tgcaagttga agacgcttga aagccgcact
     4021 agcggcaata cgtcttcgcg atgaatgatg atttcgttgt tttcaaacac cttcaccgaa
     4081 tcagcgtcga cttctattac ctcctggact gacgatcgat gaatggcaaa ggtttgtccg
     4141 gcaaccgtcg cgattaaggc gtcggcgatc gccagcgtca gcggcaattc aatctgaaag
     4201 gtggttccga ccccaggctc agtacgcatg cttaaatggc cgtcgagatc cttaatggac
     4261 cgtgagacaa cgtccattcc gacgccgcgt ccacttgcgc gatcggcgtg cttgcgggtt
     4321 gagaaacctg gctccgaaat gacttttagt aactcggaga aattgatttc accatcagtc
     4381 gtttgaagtt cccgtcccag gctttcctcg atcgcttcaa catcgatgcc gcgtcca
//
LOCUS       DATCGC010000834         1087 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_277614, whole genome shotgun sequence.
ACCESSION   DATCGC010000834 DATCGC010000000
VERSION     DATCGC010000834.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1087
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277614"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..580)
                     /locus_tag="VIJ87_08060"
     CDS             complement(<1..580)
                     /locus_tag="VIJ87_08060"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEY5444406.1"
                     /translation="MKKPVFELESFAVFREISDGGKEMLKRGLRLEDYPKKTTIVEKD
                     QVVSGAFFVARGKLRVFTITPDGNEATLYFIKPDEFCVFTLNCIFNNLLYPAWVQTET
                     QTRIGVIPAQLYRSLFRSEGTIQDITVRAFSTIVSRLMVELELIHSYKLEKRLASFLI
                     SSASKDHSVLMTQNEIAAHLGTSREVVARALRR"
     gene            complement(595..909)
                     /locus_tag="VIJ87_08065"
     CDS             complement(595..909)
                     /locus_tag="VIJ87_08065"
                     /inference="COORDINATES: protein motif:HMM:NF025392.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4242 domain-containing protein"
                     /protein_id="HEY5444407.1"
                     /translation="MTEMRFFVDTHNRSTGTFPEKMSTEEFEVFFAKYEQACAEEGVV
                     VLRLHLALEAGRVFCFNMAPNAEAVRRAHDRVGFPYDSITEVTTATPGDIFFNRSVSH
                     AA"
BASE COUNT          301 a          277 c          244 g          265 t
ORIGIN      
        1 agcgacgcag cgctctcgca acaacctcac gcgatgtgcc cagatgggcg gcaatttcat
       61 tttgcgtcat taacactgag tgatcctttg aagcgctcga gataagaaaa cttgctaacc
      121 gcttctccag cttgtaggaa tgtatcaact ccagttcaac catcagacgc gaaacaatcg
      181 tcgagaaagc gcgcacggtt atatcttgaa tagtcccttc actgcggaac aacgaccgat
      241 agagctgagc agggatgacg ccgatacgag tttgggtttc ggtttgtacc caggctggat
      301 agagaaggtt gttgaagatg caattgagtg tgaacacaca aaactcgtcc ggcttgatga
      361 aatacaatgt agcttcattg ccatcgggcg taatcgtgaa gactcgcaat ttccctctgg
      421 caacgaaaaa agcacctgaa acaacctggt ctttctcaac gatcgttgtc ttctttggat
      481 aatcttctaa acgaagcccg cgttttagca tttcctttcc gccatctgag atctcgcgga
      541 agacagcaaa ggactcaagc tcaaacacgg gcttcttcaa gttgtcatct cctcttatgc
      601 cgcatgactc acgctacggt tgaagaaaat gtcaccggga gttgccgtgg tgacttccgt
      661 aattgaatca taagggaacc cgaccctgtc gtgcgcccgg cgaacagctt cggcgttagg
      721 ggccatgtta aagcagaaca cacgccctgc ttcaagcgcc aaatgcaaac gaagcacgac
      781 gacaccctct tcggcgcaag cctgttcgta ctttgcaaag aagacttcaa actcctcggt
      841 agacatcttt tcaggaaaag tgccagttga acggttgtga gtatccacaa aaaaacgcat
      901 ctcagtcatt gctaattcct ttctcaatca aatattcgta caagacaaaa aggcttgtac
      961 gctgatcgat tatgcgcaat gactgaatac gttatctgta acaaaagtta cggagttcca
     1021 gattcaacac tcgttatcgc tgtcttcatt cgcttgcgaa cgcacgacgc tacagaagct
     1081 cgaatct
//
LOCUS       DATCGC010000835         1051 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_245275, whole genome shotgun sequence.
ACCESSION   DATCGC010000835 DATCGC010000000
VERSION     DATCGC010000835.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1051)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1051)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1051
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245275"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            306..596
                     /locus_tag="VIJ87_08070"
     CDS             306..596
                     /locus_tag="VIJ87_08070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444408.1"
                     /translation="MSSSQHVYEIRPRKDGRGLDLISERLPLGVLWFEGADAIGDAVN
                     YARAFSYPHPAIIRVLNESRTFAVTLESVDDFSRPVDISARPLRHCLMSSSQ"
BASE COUNT          263 a          252 c          266 g          270 t
ORIGIN      
        1 cacagccgac cgaatggcag cagggctgca atcagcccga cgccatgttc atcttactcg
       61 gacggattta cacactggcg cggaggtaat ccgcaatgct tccgaatgac ttatgcttgg
      121 tcaggttttc acatcgttcg cttaggtgaa aatcaccctg ctcaatcagt aggcaagcct
      181 gatttacaga atgcgtcggc gcgctataac gaggccgaca tttttacgtt ttgttatgca
      241 actcgtgaga aacgcctttc aagagaagaa atgttggtcg tatggtgttt cgcttctgta
      301 aaacgatgag cagctcacaa catgtttacg aaattcgacc gcgaaaagat gggcgtggac
      361 ttgacctaat tagtgaacgg ctgccattag gtgtgctttg gtttgaaggc gctgacgcaa
      421 ttggggatgc tgtcaattac gcgagagcgt tctcataccc gcatccggcg attattcgcg
      481 tgttgaatga gtccaggacg tttgcggtga ccctcgaatc agtggacgat ttctcccgac
      541 ccgtagatat ttctgcgcgc cctcttcgac attgcttgat gagttctagc cagtgaagga
      601 cagactaacg agtcatctct tcctgtgtaa acggcggtgc agatattgta accgcatgtt
      661 cacgccgcaa tcgcacaatc agaaatattg ttcttatacg tgtcggtgga atacaaaaat
      721 agaaaaaagc gagcttcaga ctcggattac tgctgacgtt gagcaccaga ttaaacaact
      781 cgttgcgaaa tttggtgaga agaaagttcg ggaagtgctc gacccgctga ttaacgaaat
      841 gtaatagaat gactcgcaat gcgccgctaa cgcgatccgt tgaatatctc gtcagaaatg
      901 agccagttca gcattctttg aactcgcccg tgtgctcgtg cgtctcgatc acgttgccag
      961 ccgcatcata aacgcgaatc acggcatcat gcgaacggct gctgtgcatc gcatacccga
     1021 ttgcattgtt gactgcgttt ggttcgccgt a
//
LOCUS       DATCGC010000836         1152 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_314703, whole genome shotgun sequence.
ACCESSION   DATCGC010000836 DATCGC010000000
VERSION     DATCGC010000836.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1152)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1152
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_314703"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..864)
                     /locus_tag="VIJ87_08075"
     CDS             complement(<1..864)
                     /locus_tag="VIJ87_08075"
                     /inference="COORDINATES: protein motif:HMM:NF019317.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444409.1"
                     /translation="MMFEPRNRFLILFGILALLTTLLLLSGHTSGFTDNYKEGEVLTR
                     AIIAPADITTVDVSETEQRRAAARRATRPVFNFDSSRAESSVQSFRADWEELKRQYTL
                     APSKPPVWNGEGGSVVAQAIIAHKSSEDELERLTSILREIAAGFIYDDNDAERLQQEI
                     VLVDVRKPVAQMVMPAPRTQMIAVSAARRNLELRILNLKGWAPDQKTALALAVVPLIR
                     PNVVLDQTATAAARESEANRIAPVVISLKRNQVLAREGDTLTANILAQITAIRSTGHT
                     GRPFQNLIGLLL"
     gene            complement(945..>1152)
                     /locus_tag="VIJ87_08080"
     CDS             complement(945..>1152)
                     /locus_tag="VIJ87_08080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444410.1"
                     /translation="KADLLDSGELDGAVRQAHNEAAEVVVISAIRQTSLTPLLEKAGA
                     ILARNLAAELIEDERYRPAVSRIA"
BASE COUNT          251 a          289 c          319 g          293 t
ORIGIN      
        1 tagcaataag ccgatcaagt tttggaaagg cctgcctgtg tgtccagtac ttcggatagc
       61 cgtgatctgc gccaggatat ttgcagttag agtgtcgccc tcacgtgcga gaacctgatt
      121 acgttttagc gagatcacaa ctggcgcgat tcggttagcc tcgctttcac gtgcggcggc
      181 cgtggcagtt tggtcgagta ctacatttgg gcgaatcaga gggaccactg ccagcgccaa
      241 tgccgtcttt tgatctggtg cccagccctt gagattaagg attctcaact cgaggtttcg
      301 gcgcgctgca gaaactgcga tcatctgggt gcgtggcgcg ggcatgacca tttgagcaac
      361 aggtttacgt acatctacca agactatctc ctgttgcaat cgttcggcgt cgttgtcgtc
      421 gtagataaat ccagcggcga tttcgcggag gattgatgtc aaccgttcga gttcatcttc
      481 actagacttg tgagcgatga tcgcctgcgc gacaaccgat ccaccttcgc cattccaaac
      541 tggtggcttg gaaggggcga gggtgtattg acgttttaac tcctcccagt cggcgcgaaa
      601 actctgtact gacgattccg cccggctcga atcaaagttg aacacaggcc gagttgctcg
      661 tcgtgctgct gcacgtcgct gttcggtctc tgatacgtca actgtagtga tgtcggcagg
      721 cgcgatgatt gcgcgggtga gtacttcccc ttctttatag ttatcggtaa agccagaagt
      781 gtggccactc aataggagca gtgtggtaag taacgcgaga ataccgaaga gaatgaggaa
      841 ccggtttcgc ggttcgaaca tcatgaaggg acgaatcgca tagctcacga gcttatcgcg
      901 agtctggcta agcggagttt tgaaacgtgg tggtcggaga cccattatgc gatacgcgat
      961 acagctggtc tgtatcgctc atcttcaatt agttcagcag caagattgcg agcgagaatt
     1021 gctcctgcct tttccaataa cggcgtcaag ctcgtttgac gaatagccga gatcacaacc
     1081 acctctgcag cttcgttgtg agcttgtcta actgctccat cgagctcgcc actgtcgagt
     1141 aagtccgctt tg
//
LOCUS       DATCGC010000837         1239 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_179409, whole genome shotgun sequence.
ACCESSION   DATCGC010000837 DATCGC010000000
VERSION     DATCGC010000837.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1239
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179409"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1239)
                     /locus_tag="VIJ87_08085"
     CDS             complement(<1..>1239)
                     /locus_tag="VIJ87_08085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444411.1"
                     /translation="LTVKATLQQYDWYTYLPHAFLHPSALQIQGIVLALLSLTWIAAR
                     FGMKKVVGEEGHPLASVWRLLDTKYAIDRLIPWVLLGAFVMFAFYGAGLGVVQEFALR
                     GTTLPNLDVAGFPHQEVFSIGSWILLGLLILIMLANAWERRRSLYLIGSLVSISVAIP
                     LLAGRFEAELATATAWRFLAALFFLAGSVCIWNRETIQRQLKSFGWPAVEVKVEILAT
                     LLRVVLLTLTCAPILFFTFYPALRALMYAPVQVPLGVFALFDSTVSYALPLIVIALVF
                     VGYAIREGLPRFNSYAALLLNTTVSLAYVLSVVSANGSLDAAVLIRTVQLNAVTLGVH
                     ALLWTVLRRRWLQALESREREVESLLFLEMSVVAVLTLSVIVPTVFMLIFQIVLGTAT
                     LTAGDSFGWFTLIVTALTVVV"
BASE COUNT          370 a          319 c          313 g          237 t
ORIGIN      
        1 actacaacgg taagagcggt cactatcagc gtaaaccaac caaacgaatc tccagcggtt
       61 agcgttgctg tacctaaaac aatctggaag atcagcatga atacggtagg cacaatgacc
      121 gagagggtga ggacagctac cacactcatc tcgaggaaaa gcagtgactc cacttcccgt
      181 tcacgactct ccaacgcctg gagccaacgc ctacgaagaa ctgtccacaa cagagcatgg
      241 acacccagag tgaccgcatt caattgtacg gttctaatta acacagccgc gtcgagtgaa
      301 ccgttagcgg aaacaaccga taacacgtaa gccaacgaga ccgtagtgtt gagtagaagt
      361 gcagcgtaag aattgaaccg cggcaagccc tcacgaatgg cataacccac gaacacgagg
      421 gcgatgacga ttagtggtag ggcatacgaa acggtgctgt cgaacaaagc gaaaacaccc
      481 aacgggacct gaacgggtgc atacatcagt gctcgaagcg cgggataaaa tgtgaagaaa
      541 agaatcgggg cacaggttag tgttagaaga actacacgca gcagagttgc cagtatttca
      601 accttgacct caactgctgg ccagccaaat gatttgagtt gccgttgaat tgtttccctg
      661 ttccagatgc agaccgaacc agctaagaag aacaaggctg ccaaaaatcg ccatgctgtt
      721 gctgtagcga gctctgcttc aaagcgacct gccaggagag gtatcgcgac tgaaatggat
      781 accagggacc cgattaagta aagactacgc cgccgctccc atgcgtttgc caacatgatt
      841 aggatcaaca agccaagtag tatccatgaa ccaatggaaa aaacttcctg atgcggaaac
      901 ccggcaacgt ccaaattcgg cagtgttgtt cctcgtaagg caaactcctg cactacgcca
      961 aggcctgctc catagaacgc aaacattaca aacgcaccta agagaaccca ggggatgagt
     1021 cggtcgattg catacttcgt gtcgagtagc cgccagacac ttgcgagtgg gtgtccttcc
     1081 tcaccgacaa ctttcttcat tccaaaacgc gcagcaatcc acgtcaggct caacagtgcg
     1141 agcacaatgc cttgaatctg tagcgcagac ggatggagaa atgcgtgtgg caggtaggtg
     1201 taccagtcat attgttgcag ggtcgctttg acggtgagt
//
LOCUS       DATCGC010000838         1579 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_245289, whole genome shotgun sequence.
ACCESSION   DATCGC010000838 DATCGC010000000
VERSION     DATCGC010000838.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1579)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1579)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1579
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245289"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..528)
                     /locus_tag="VIJ87_08090"
     CDS             complement(<1..528)
                     /locus_tag="VIJ87_08090"
                     /inference="COORDINATES: protein motif:HMM:NF013567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEY5444412.1"
                     /translation="MSEQKMKLSRRDLLKTAAIGGLGISAFSNQTRGNAADHETAGAK
                     GQKQQTMMGVKFEPRDVVRVGLIGVGLRGTDVLGEFLAIDKVVVNAVCDVVKEKCLRA
                     AQLVEKAGQKTPAIYSNGERDFEQLSKRDDLDFIYIATPWEWHVPQALAALKAGKHVG
                     TEVPAAYTIEDCWQLV"
     gene            complement(766..>1579)
                     /locus_tag="VIJ87_08095"
     CDS             complement(766..>1579)
                     /locus_tag="VIJ87_08095"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY5444413.1"
                     /translation="TADMYTYPAGGTGLDASLPPWVFDGGREAAYKRLQDPVTRQKIA
                     EAVRTPTKEWENLYMLTGSPDRILLASFKSESLKPLTGKTLAEVAKMRGKDPIETIMD
                     LVLEDRSRIGTIYFLMNEDNIKKQIKQPWVSFGSDAASIEAEGVFLKSAAHPRAYGNF
                     ARLLGKYVRDEKVISLTEAVRRLSGLPATNLGLDHRGFLQPGMFADVVIFDPQIIADK
                     ATFPNPHQYSVGVRDVFVNGQQVLKNGESTSTRPGRALWGPGKIMGNSNQNQ"
BASE COUNT          344 a          437 c          391 g          407 t
ORIGIN      
        1 gacaagttgc caacagtcct cgatggtgta agccgcagga acctcggtgc caacatgctt
       61 gcccgctttc agggccgcca gggcttgcgg cacatgccac tcccagggcg tcgcgatgta
      121 aatgaaatcg agatcgtcgc gtttggaaag ctgttcgaaa tctcgctcgc cattggaata
      181 tatggctggt gttttctgcc cggccttttc aaccagttga gccgcgcgca gacacttctc
      241 cttgaccaca tcgcagaccg cattaacgac aaccttatcg atcgccagaa actctccaag
      301 cacatcggtg ccacgtagtc cgacgccaat caaccccact cgtactacat cgcgcggttc
      361 aaacttcacg cccatcatcg tctgctgttt ctgacctttg gcgccggccg tctcatggtc
      421 cgcggcattg cctctggtct ggttgctgaa cgcactgata cccaagccgc cgatagcggc
      481 tgttttaagt agatcgcgac gagatagctt cattttctgt tcactcatgg tgtctccctc
      541 acaagctaac tctcacttaa gcagattatt tgtgaacttc ttcaggtagg attgaatatt
      601 atcttaccaa tcgatgttga agctacggtc ttttcattca acgcaatcaa acgtcaccag
      661 acgtaaaggt gatcggagtt tgattgttcc agcgaagatc cgtcgagagc agtctggtca
      721 ttcgactctg acgcggggaa ccactgtttc tatgcgttga gagtttcact ggttctggtt
      781 tgaattaccc atgattttgc ctggccccca cagcgctcgt cccggtcttg ttgacgtaga
      841 ttcgccgttc ttcagcactt gttggccgtt cacgaaaaca tccctgacgc cgacagaata
      901 ttgatgtgga tttgggaagg ttgccttgtc agcaattatt tgcggatcga aaatgactac
      961 atcggcaaac atgcccggct ggagaaagcc tcgatggtcc aggccaagat tggtcgccgg
     1021 taatccactg agtcttcgca cggcctcagt gagagaaatc actttctcat cgcgcacgta
     1081 cttaccaagc agccgcgcaa aattgccata agcccgcgga tgtgccgcag atttgaggaa
     1141 gacgccttct gcctcgatcg aagcggcgtc tgaaccaaac gaaacccacg gctgcttgat
     1201 ttgcttcttg atgttgtctt cgttcatcag gaaatagatt gtcccgatgc gggagcgatc
     1261 ttcgagcacg agatccatga tcgtctcgat cggatcttta ccgcgcatct ttgccacttc
     1321 ggcgagggtc ttccctgtga gcggtttaag actttctgat ttgaaacttg ccaacaagat
     1381 acgatcgggc gagcccgtca gcatgtagag attctcccat tccttcgtcg gcgtgcgaac
     1441 agcctcggca attttctgac gagtgaccgg atcttgaagt cgtttgtaag cagcttcgcg
     1501 tccaccatca aagacccacg gtggtagtga tgcgtcgaga cctgttccgc ctgccggata
     1561 cgtatacatg tcggctgtg
//
LOCUS       DATCGC010000839         1055 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_16726, whole genome shotgun sequence.
ACCESSION   DATCGC010000839 DATCGC010000000
VERSION     DATCGC010000839.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1055)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1055)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1055
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16726"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..951
                     /gene="malQ"
                     /locus_tag="VIJ87_08100"
     CDS             <1..951
                     /gene="malQ"
                     /locus_tag="VIJ87_08100"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: protein motif:HMM:TIGR00217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004134 - 4-alpha-glucanotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0005980 - glycogen catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HEY5444414.1"
                     /translation="FFQFLFFRQWFELKTYCHQRGIKILGDIPIFIAEDSADVWTNPD
                     QFKLDENGRPTVVAGVPPDYFSKTGQFWGNPIYNWDQMKTDGFAWWIKRVHAALRMFD
                     LVRIDHFRGFAASWEIPAGDKTAERGSWVSVPGKELFHAIKLGLGDVPIIAEDLGVIT
                     PDVEKLRDELGFPGMHVLQFGFGGDANNADLPHNYRRNLVAYTGTHDNDTTVGWFRSQ
                     AGAGSTREAADIDREREFCLQYLNTDGSQIHWDFIRAVLSSVADTAILPVQDLLGLGN
                     EARMNLPNSSSGNWSWRVEAGAFTEEIAGKLLELTRLFGR"
BASE COUNT          258 a          239 c          286 g          272 t
ORIGIN      
        1 ttttttcagt ttctcttttt tcgccaatgg ttcgaactaa agacgtattg tcatcagcgc
       61 ggaattaaga tccttggcga tattccaatc tttattgctg aagattcggc ggatgtttgg
      121 accaatcccg atcagttcaa actcgatgag aatggccgcc caaccgtggt ggccggagtg
      181 ccacccgatt atttcagtaa gacagggcag ttttggggaa atccgattta caactgggat
      241 caaatgaaga cagacggttt tgcctggtgg ataaaacgag tccatgcggc attacgaatg
      301 tttgacttgg ttcgtatcga tcactttcga ggctttgcgg cgtcgtggga aattccggcc
      361 ggagataaga ctgccgaacg tggcagttgg gtgtccgttc cgggaaaaga actttttcac
      421 gccataaagc tgggccttgg cgatgtacca attattgctg aagatcttgg cgtcattaca
      481 cccgacgtcg agaaactcag agacgagctg ggctttccgg gaatgcatgt tctccagttt
      541 ggttttggag gcgatgcaaa taacgcagat ctaccgcaca actatcgtcg aaatctcgtt
      601 gcctataccg ggacacatga caacgataca acggtgggtt ggttcaggag tcaggcgggc
      661 gctggctcaa ctcgagaggc cgctgacatt gatcgcgaac gagaattctg tttgcagtat
      721 ctcaacacag atggcagtca gattcattgg gactttattc gcgccgtgct tagctctgta
      781 gcagacacag cgattctgcc cgttcaagat ctcctgggcc tgggaaacga agcgcggatg
      841 aatttaccga acagcagctc gggcaattgg agttggaggg tcgaagctgg tgccttcacc
      901 gaagagatcg ccggaaagct acttgagtta acaagactgt ttggtcggta aactattcga
      961 cgacttccac tgcacgagac agtactcgcg cgttcatttt actgaacact tcgccattaa
     1021 gttgaactgg tgttttcgaa agtgggactg caaag
//
LOCUS       DATCGC010000840         1021 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_445612, whole genome shotgun sequence.
ACCESSION   DATCGC010000840 DATCGC010000000
VERSION     DATCGC010000840.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1021
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_445612"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            77..>1021
                     /locus_tag="VIJ87_08105"
     CDS             77..>1021
                     /locus_tag="VIJ87_08105"
                     /inference="COORDINATES: protein motif:HMM:NF016145.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide pyruvyl transferase family
                     protein"
                     /protein_id="HEY5444415.1"
                     /translation="MRAYYRFEKAFGMKEDFIELDPAKSAQNILRNRKFGIIQDLYAA
                     VSEADIVVVDGNGDLIFRAQPARIPLFNLAVIELASQLGKEVQYVNSIFADCPIDGRN
                     ESFHQFARSTLAKCSKIALRDPASIRLAKLSAPELNVEFVPDSLFLWYDLLQDASADV
                     PNNGDYVIPFLHERLEHYGRLRFDQPYICLSGSSHAAFFQKEAIEAYSALATVVRDRF
                     DMNVYLTPTCRGDRFMYEVAARTSLPIIPAELPIVMAAGIVGRAQAYITGRYHPAIMA
                     SLGGTPCVFLGADSHKTTSLQELLEYEQVQTFSALPSPV"
BASE COUNT          243 a          250 c          246 g          282 t
ORIGIN      
        1 gccgatcgtt atagataccg ttttttcttc ctcattggct tctccattac ttgcccgtcg
       61 gaatcggaat gccatcttgc gtgcatatta tcggtttgaa aaagcttttg gaatgaagga
      121 agattttatt gagctcgatc ctgcaaagag tgctcaaaac atcctgagga acaggaagtt
      181 tgggattatt caagatcttt atgccgcagt ctcggaggcc gacatcgttg tagtagatgg
      241 aaacggtgat ctgatctttc gggcccagcc ggcacgcatc ccgttgttta acctcgccgt
      301 gatcgaatta gcttctcagc tcggcaagga agtacagtac gtcaattcca tatttgccga
      361 ctgccccatc gacggccgaa atgagagctt tcatcaattt gcaagatcta cgcttgcaaa
      421 gtgctcgaag atcgctttgc gcgatccagc ttcgattcgc cttgcaaagt tgagtgcacc
      481 agaactaaat gttgagtttg tgcccgactc gctctttcta tggtatgacc ttttgcagga
      541 tgcttccgca gatgttccca acaacgggga ttacgtaatt ccgtttctac acgaacgtct
      601 agagcactat ggacgcctca ggttcgacca gccatatatt tgtctctcgg gaagttcgca
      661 tgccgcgttc tttcagaagg aagccattga agcatattca gccttggcta cggttgtacg
      721 ggatagattc gacatgaatg tttacctcac gccgacatgc cgaggagacc gcttcatgta
      781 tgaagttgct gcgcggacct cacttccaat aatccccgct gaattaccaa tagtgatggc
      841 agctggaatc gtcggaaggg cgcaggcgta cataactggt cgctatcacc cggcaattat
      901 ggcttctctt ggcggtacac cttgtgtgtt tctaggggcc gattcacata agacgacgag
      961 tctgcaagaa ttgctcgagt atgaacaagt acagactttt tcagctttac catcaccggt
     1021 a
//
LOCUS       DATCGC010000841         2396 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_45307, whole genome shotgun sequence.
ACCESSION   DATCGC010000841 DATCGC010000000
VERSION     DATCGC010000841.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2396)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2396)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2396
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45307"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..243)
                     /locus_tag="VIJ87_08110"
     CDS             complement(<1..243)
                     /locus_tag="VIJ87_08110"
                     /inference="COORDINATES: protein motif:HMM:NF012360.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444416.1"
                     /translation="MTRPTNIHPTAVVSPKARLGEDCFIGPYSLIGDDVELGDGVRLE
                     SHCVVDGHTSIGAQTHVFPFVSIGLASQDLKYQGEPS"
     gene            complement(371..823)
                     /gene="fabZ"
                     /locus_tag="VIJ87_08115"
     CDS             complement(371..823)
                     /gene="fabZ"
                     /locus_tag="VIJ87_08115"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: protein motif:HMM:TIGR01750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HEY5444417.1"
                     /translation="METVLDALAIQQLLPHRYPFLLVDRIIELVPRERIVGIKQVSIN
                     ESFFQGHFPGAPVMPGVLVVEALAQVGAVLALREIEDRDQKLVLFTGIKEARFRRPVV
                     PGDTLVLEVTALRIGSRVQRMRGEAKVDGQLAADAEIMSIVAPREAEK"
     gene            complement(898..1557)
                     /locus_tag="VIJ87_08120"
     CDS             complement(898..1557)
                     /locus_tag="VIJ87_08120"
                     /inference="COORDINATES: protein motif:HMM:NF015871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HEY5444418.1"
                     /translation="MKRYQFLSAGLLTILTALSVSAQRPAAQATPTPAQRPPAQTTTQ
                     TPPANVSLPMSKMGVIYTELFLDSKEGILKFATLVTKLNSEFQKQKDELTQMGQQAQA
                     LETEITKLQSAPAGTPIDAKSIQAKSDQLEALKRDIQRKGEDAQAGYNRRRAELFQPL
                     QEDIGKALEVFAKARNINVIIDGTQVPLIYAADSIDITKAFIVEFNSKNPVTAATTPP
                     R"
     gene            complement(1633..2247)
                     /locus_tag="VIJ87_08125"
     CDS             complement(1633..2247)
                     /locus_tag="VIJ87_08125"
                     /inference="COORDINATES: protein motif:HMM:NF015871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HEY5444419.1"
                     /translation="MKIVRLFAAVALLTTVANISVSAQQPKPGASAPAAAPQSNVAVP
                     DSKMALIYSDAFTDPKNGIARFGTLLTTLNKEFQPRQTELTSMDQKIQQLTKEINDTQ
                     AVADPKTIAQKRDQLESLNRDFKRKGEDAQAAYGRRRQEIFQPLQEDIGKALEAFAKA
                     RGITVIVDGSQVPVVYAADSIDVTKAFIADFNSKNPATASVTQP"
BASE COUNT          559 a          598 c          610 g          629 t
ORIGIN      
        1 ggaaggttca ccttgatatt tcaaatcctg cgaagcgagt ccgattgaga cgaaaggaaa
       61 aacgtgagtc tgggcgccta ttgaagtgtg tccatcaaca acgcagtgag actccagtct
      121 cacgccgtcg cccagttcga cgtcatcgcc gatgagtgaa tacggaccaa tgaaacaatc
      181 ctcaccgaga cgcgctttag gacttacgac tgcggttgga tggatatttg tcgggcgggt
      241 cactgtcgac atggggcaaa ttaaagaatc tcagagcgca gatttaaaat tgcagatttc
      301 agatttccat gccttcagct tggactctga gatctgaaat ttgagatctg agatcatctt
      361 cggcctgaga tcatttttca gcttctcgtg gcgcaacaat actcatgatc tcagcgtcag
      421 cagcgagttg gccatcgacc tttgcttcgc cacgcatacg ttgcacgcgt gagccaatac
      481 gtaaagccgt aacctcgaga accagggtgt caccgggtac aactggccga cggaacctgg
      541 cctcctttat tccggtaaac aaaaccaact tttgatcacg atcctcgatc tcgcgcaatg
      601 cgagtacagc acccacttgc gccaatgctt ccactactag cacgccaggc atcaccggag
      661 cacctggaaa gtgcccctga aagaacgatt cattgatgct cacttgcttg atcccaacta
      721 tgcgctcgcg gggaaccaac tcgataatgc ggtcgacgag aaggaacggg tagcggtggg
      781 gcaggagctg ctgaatcgct agtgcgtcaa gaacagtttc catggctgaa ataaacaacg
      841 cggtgaagcg ggatctaaag ccgcatcacc gcgcatagga tgagctgcct ccaattacta
      901 ccgaggaggt gtagtggctg cggttactgg attcttacta ttgaattcga caatgaaagc
      961 cttagtgata tctatactgt ccgctgcata gatgagtgga acctgggttc catcgatgat
     1021 cacatttatg ttccgtgctt ttgcaaacac ttccagagct ttccctatat cttcctgcaa
     1081 cggttggaaa agttctgcgc gacgtcgatt gtaaccagcc tgcgcatctt cgcctttacg
     1141 ttgaatgtcg cgcttgagcg cttccaactg atcgctcttg gcctgtattg acttcgcatc
     1201 gattggtgtt ccagccggcg cgctctgcaa tttggtgatt tcagtttcca gcgcttgagc
     1261 ttgctggccc atttgagtga gctcgtcctt ttgtttttga aactcactgt tgagttttgt
     1321 gactaaggta gcaaacttca ggatgccttc cttagagtcg agaaacagct cggtgtaaat
     1381 cactcccatt ttactcatcg gcagcgagac attcgccgga ggtgtctgag tagttgtttg
     1441 tgccggaggt cgttgcgctg gagttggtgt agcctgagcg gccggtcgtt gagctgaaac
     1501 tgacaaggca gtcagaatcg tcaacaagcc ggctgatagg aattgatatc tcttcattga
     1561 tttggccatt aaggcctcgg ggttagcccg aggcctttcc ctggcaatgc catttatgaa
     1621 aactgcgccc gactacggct gggtaactga cgctgttgcc ggattcttgc tattgaaatc
     1681 ggcgatgaat gcttttgtaa catcaatgct gtcggcagca taaacaacag gcacttgact
     1741 accgtctacg atgaccgtaa taccacgcgc ctttgcgaac gcttcaagag ctttgccgat
     1801 gtcttcctgc aatggctgga agatttcctg acgacgtcga ccataagcag cctgcgcatc
     1861 ttcgccctta cgtttgaagt cacggttaag cgattcgagc tgatctcgct tttgcgcaat
     1921 cgtctttgga tctgcgaccg cctgggtatc gttgatttct ttcgtaagct gctggatttt
     1981 ttgatccatg ctagtgagct cagtttggcg cggctgaaat tctttattca aagtggtaag
     2041 caaggttccg aaccgagcga tgccattctt cggatcagta aaagcgtcgg aataaatcaa
     2101 cgccatcttg ctgtccggca cagccacgtt gctttggggg gccgccgccg gcgcactggc
     2161 acccggcttc ggctgttgag ctgaaactga aatgtttgcg acggtcgtca gcagtgcgac
     2221 tgcggcaaat aggcgaacta tcttcataac tttctagtaa tactccttac tttgaggcgg
     2281 tcagataaac ttgttagttg taaatctacc cacccaggtt ggctcaattg attaaaaggt
     2341 gcggcctacg ctaaagcgga tgaccttctt tttctcattg aagaagaacg gaaatc
//
LOCUS       DATCGC010000842         2904 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_145561, whole genome shotgun sequence.
ACCESSION   DATCGC010000842 DATCGC010000000
VERSION     DATCGC010000842.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2904)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2904)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2904
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145561"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1792)
                     /gene="glgP"
                     /locus_tag="VIJ87_08130"
     CDS             complement(<1..1792)
                     /gene="glgP"
                     /locus_tag="VIJ87_08130"
                     /inference="COORDINATES: protein motif:HMM:TIGR02094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucan family phosphorylase"
                     /protein_id="HEY5444420.1"
                     /translation="MIDTTEIERIVLTKRELPAPLKPLERLALNYWWSWSADGASLFR
                     DLDADIWEECEHNPRQLLAKTSPYRLAQAATDPVYLERVRRIDELFQDYMAQTTAWPQ
                     TGTPVITSANPVAYFCAEFGVHNSLPLYSGGLGILAGDHLKSASDLRLPLVAVGLLYR
                     YGYFVQRLRTDGWQEEHYGETFPAELPIQIVRDVDGLPLQIEVLIRERKVLAQVWRAD
                     VGHVQLYLLDTNIPENIETDRWVTGHLYGGDRETRIVQEMLLGIGGVRLLRKLGVEPH
                     VFHLNEGHSAFLTLELAREVIQREQCSMAEATAIVRTQCVFTTHTPVAAGNDEFDPAL
                     VVRSFGSSYLNALGLTQEEFLGLGRVNPTNASERFGLTPLAIRMCRSTNGVSKKHGEV
                     SRSLWQELWPEKTADEIPITHITNGVHAPTWVSPLLRYLYEKYVGADWANQLNDRVRW
                     EKAVAGISDEELWIAHSLLKERLVAFLRFRSYQARRAAGEKLDYIEAANTMFEPGALT
                     IGFARRVAGYKRWNLLLTDPDRLLRLINDSNRPIQFVFAGKAHPQDDGSKRILQQLAY
                     WKYDPRVRQRAVFLEDYDQEIARQLVQSVDV"
     gene            complement(1893..2450)
                     /locus_tag="VIJ87_08135"
     CDS             complement(1893..2450)
                     /locus_tag="VIJ87_08135"
                     /EC_number="3.1.1.106"
                     /inference="COORDINATES: protein motif:HMM:NF001664.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetyl-ADP-ribose deacetylase"
                     /protein_id="HEY5444421.1"
                     /translation="MEPDIKASFLDGRVVVLIDDITRQGVDAIVNAANSTLLGGGGVD
                     GAIHRIGGPQILQECRGIRETKYPQGLPTGEAVITTGGELPARFVIHTVGPIYGRDEE
                     REATLLAACYQNSLELAQEHQLVSIAFPSISTGAFGYPREQAAAISSSAIKDSLAQNA
                     ALEQVRLVFFQPRDLRVFLQYQIFE"
     gene            complement(2440..>2904)
                     /locus_tag="VIJ87_08140"
     CDS             complement(2440..>2904)
                     /locus_tag="VIJ87_08140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444422.1"
                     /translation="RYLFRRVRQMLGVNQIRMVKLSRRINLPAALVQKTAHEIKREVR
                     EYCLIVEGAYLSESEAEHALRDPFIEDWVEQTGHFRIHNMNEIQIAPGVTLGSLGVVM
                     LDDRLFEIASTDPEHPLTEHKAKGVAEALRRQDMFDEIRTEPREEELVNDGA"
BASE COUNT          731 a          770 c          707 g          696 t
ORIGIN      
        1 acacgtcgac tgactgtacc aactgacgcg cgatttcctg atcgtagtct tcaaggaata
       61 ccgcacgctg ccgaacgcgt gggtcatatt tccaataggc gagttgttgc aggatgcgct
      121 tggagccatc gtcttgcggg tgcgcttttc cagcaaacac aaattgaatg ggtcggttgc
      181 tgtcattgat cagacgcaac agacgatctg gatccgtcaa caagagattc caccgtttat
      241 accccgcaac ccgacgagcg aatccaatcg tcaaggcgcc aggttcaaac atcgtgttgg
      301 cagcttcgat atagtcgagc ttttccccag ccgcgcgacg cgcttgatac gaacggaagc
      361 gcagaaaagc taccaatcgc tccttgagca acgaatgggc aatccacaac tcttcatctg
      421 aaataccggc gacagccttt tcccatcgaa cccgatcgtt aagctggttt gcccaatccg
      481 caccgacata tttctcgtag agataacgca acagcggcga cacccaggtt ggagcatgaa
      541 cgccatttgt aatgtgggtg atcggtattt catcagccgt cttctctggc caaagctcct
      601 gccaaagtga gcgcgaaacc tccccatgct ttttgctgac gccgttcgtt gagcgacaca
      661 ttctgattgc gagcggagtg agtccaaacc tttcacttgc attggttgga ttaactcgac
      721 ctaatccgag aaactcttcc tgcgtaagtc ccagcgcgtt cagatagctt gaaccaaacg
      781 aacgaacaac cagtgctgga tcaaactcat catttcctgc ggctaccgga gtgtgagtag
      841 taaagacgca ctgagttctt acaattgctg tcgcttcagc catcgaacac tgttcacgtt
      901 gaattacctc acgagccaat tccaaagtca gaaacgctga gtgcccctca ttaagatgaa
      961 acacgtgcgg ctccacgccg agtttcctta acagtctgac gccaccaatt ccgagcagca
     1021 tctcttgaac gatgcgcgtc tcacgatcgc caccgtatag atgaccagta acccagcgat
     1081 ctgtttcgat gttttccgga atgtttgtgt cgagtaggta gagctgaaca tgtccaacat
     1141 cagcgcgcca aacttgcgcc agaaccttgc gttcgcggat caagacttcg atttgtaacg
     1201 gaaggccatc aacgtcgcga acgatctgta ttggtagttc agcaggaaag gtttcgccgt
     1261 agtgttcctc ttgccaacca tcggtacgca atcgctgaac gaaatagcca taacgataaa
     1321 gcagcccgac tgcgaccaat ggcaaacgaa gatcgctggc tgacttgagg tgatcgccag
     1381 ccagtattcc taagccgccc gagtagagcg gcaaggagtt gtgaacacca aactccgcac
     1441 aaaaataagc aacgggattc gcggaagtaa taacaggagt tccggtttgt ggccaggcag
     1501 tggtctgcgc catgtagtcc tgaaatagct cgtctattcg tcggactctc tccaggtaga
     1561 cgggatcggt cgcagcctgc gccaatcgat agggtgacgt cttagccaga agttgtcgtg
     1621 gattgtgttc acactcttcc cagatgtccg cgtcgaggtc acgaaaaagg cttgcgccat
     1681 ccgcggacca actccaccag taattcaacg ccagtcgttc aagcggcttc agaggcgctg
     1741 gcaattctcg ttttgttaat acaattcttt cgatttcagt agtgtcaatc attcagctaa
     1801 tttgtatccc gaacaataaa ggtacgaaga acttagtttt taaaaaaaga gccggtctgt
     1861 ctgctggatt ttctaataca gggccggaaa gtttactcga agatctgata ttgcagaaat
     1921 acccgaaggt ctcttggttg gaagaagaca aggcgaacct gctctaaagc ggcattctgg
     1981 gctagcgaat ctttgatcgc tgaggatgaa atagctgccg cttgctcacg cggatagcca
     2041 aatgcgcccg ttgagataga cggaaaagcg atagaaacga gctggtgttc ctgtgctaat
     2101 tcaagcgaat tctggtaaca cgcggccaat aaagtggcct cccgctcctc atctcgccca
     2161 tagatcggcc cgacggtgtg aattacaaat ctggcaggta gttctcctcc agttgtaata
     2221 acagcctcac cggtgggtag tccctgcggg tacttcgtct cccgaatgcc acgacactct
     2281 tgcagtattt gcggaccgcc aatgcgatgg attgccccgt caaccccacc gccacccagt
     2341 aaagttgaat tggcggcgtt aacaatggcg tcgacgccct gacgagtaat gtcgtcaatc
     2401 agaacgacaa cgcgtccgtc aagaaacgac gccttaatat caggctccat cgttaactaa
     2461 ctcttcttca cgaggctcag ttctgatttc gtcgaacatg tcttgtcgac gaagagcttc
     2521 ggcgactcct tttgctttat gttctgtcag aggatgttca ggatcggtgc tggcaatttc
     2581 gaaaaggcga tcatccaaca tcacgactcc aagtgaacca agcgtaacac ctggagcaat
     2641 ctggatttcg ttcatgttgt gaatccgaaa gtgaccagtc tgttcgaccc agtcttctat
     2701 gaaggggtcg cggagagcgt gctcagcctc ggattctgaa agatacgcgc cttcgacgat
     2761 gagacaatat tcgcgcactt ctctttttat ttcgtgagcc gttttttgga ccaaagccgc
     2821 cggcaggttt atccgacgcg ataactttac catcctgatt tggttgacgc caagcatttg
     2881 tctaacccga cggaaaagat aacg
//
LOCUS       DATCGC010000843         1020 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_344225, whole genome shotgun sequence.
ACCESSION   DATCGC010000843 DATCGC010000000
VERSION     DATCGC010000843.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1020)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1020
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_344225"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            155..>1020
                     /locus_tag="VIJ87_08145"
     CDS             155..>1020
                     /locus_tag="VIJ87_08145"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY5444423.1"
                     /translation="MDLTTLGFPASYNNAVGEGIRRFPRFDFTCSGSCTGTPVGNGHS
                     NEFRPVSSHFGTAVLNWIKGKHALRFGGEMRIYREDDSFASNDQSGQFAFDNTYTRQG
                     TGTGQQTTDVEGLQAFASFLLGYPSTMSIIRRSDYSEYSKTWGFFAQDDLRLTSKLTL
                     NLGLRWEFEQALTERQNKSVSGFDFAYTQPFEAQAQANYALILSKLPANDVLKTIYPL
                     STITAKGGLLFAGKDTGSGLYNTPMNGFLPRVGFAYGWNDKTVLRGGFGLFQGFLGER
                     RGDVIQPGYTQVT"
BASE COUNT          245 a          253 c          267 g          255 t
ORIGIN      
        1 caactcgatc tatgtcggtg acaggtttgt gtttgcctcg aggcaggctg ttctcgatga
       61 ggtccatact ttcaataaca acaccatcct caacctctga tacggtttta atcgattcat
      121 tcggaatcca gacgcacccg agggacaata cgggatggat ctgaccacac ttgggtttcc
      181 cgcctcgtat aacaatgctg ttggtgaagg tattcggcgc tttccgcgct tcgactttac
      241 atgctcagga agctgtacag gtactcccgt tggcaatggt cacagcaatg agttccgacc
      301 tgtcagcagt cactttggga ctgcggtgtt gaactggata aagggcaagc acgcacttcg
      361 gttcggtgga gagatgcgca tctatcgtga ggacgatagc tttgcgagta atgaccagtc
      421 gggccaattc gcgttcgaca acacctacac cagacagggt accggtaccg gccaacaaac
      481 aactgatgtc gagggtttgc aggcttttgc gtcgttcctg ctcggctatc caagcacgat
      541 gtcaatcata cgccggtcgg attattctga gtactccaag acgtgggggt tctttgctca
      601 ggacgaccta agactcacta gcaaactaac cctgaatctc ggtttgcgct gggaatttga
      661 acaggcatta actgaacgtc agaacaagag cgtttccggt ttcgatttcg cctatacgca
      721 gccgtttgaa gcgcaggccc aagctaacta tgcgctgata ttaagtaagt tacccgcgaa
      781 cgatgttctc aaaactattt acccgctgag tacgatcaca gctaaaggcg gtctattgtt
      841 tgccggcaaa gacacgggaa gtggactcta taacacgcca atgaatggct ttctgccacg
      901 cgtgggattt gcctatggat ggaatgacaa gacggtattg cgcggaggct ttggcttgtt
      961 tcaaggcttc ctgggtgagc ggcgtggaga cgtcattcaa ccaggttaca ctcaagtcac
//
LOCUS       DATCGC010000844         1195 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_81209, whole genome shotgun sequence.
ACCESSION   DATCGC010000844 DATCGC010000000
VERSION     DATCGC010000844.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1195
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_81209"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..957
                     /locus_tag="VIJ87_08150"
     CDS             <1..957
                     /locus_tag="VIJ87_08150"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEY5444424.1"
                     /translation="ALRKRHLRLKLIQVCQHRMRFQPQTTKATDLTRTEKVSPLLYVL
                     AAAILWSTGGLFIKWTQLSGLELSFYRSFFALLIVAFVTRREGFGLNKVSAAASLLYA
                     VLIILFVLATKKTTAANAIFLQYTAPVYLLIFEPLVYKEKFRLRDLITVLVCIGGMTL
                     FFVGKLRPEDVVGNFLALASGVCFAAYFLLLRHSTARLVNRASSAIYGNLLVVLVTAP
                     WGLSALTSLDRHDTLSVIYLGVIQIGLAYTLFTVAMARGVRSLDAGIIGYAEPVLNPI
                     WVFLVLGEKPSEWALLGGAIIIVAVIVHMLMDAKRKRSEIVR"
BASE COUNT          248 a          309 c          303 g          335 t
ORIGIN      
        1 gcgctcagaa agcggcactt gagactcaag ttgattcagg tgtgtcagca ccggatgcga
       61 ttccaaccgc aaacgaccaa agccactgat ttgacccgga ctgaaaaggt ctccccgctg
      121 ctttacgtgc ttgctgcggc aatcctgtgg agcacggggg gccttttcat taagtggaca
      181 caactgtctg gccttgagct ttcgttttat cgttcattct ttgcgctgtt aatagttgcc
      241 ttcgtcacca ggcgcgaagg cttcggacta aacaaagtat ctgctgcggc gtcactactc
      301 tacgctgttc tcatcatcct ctttgtctta gcaacgaaga agactacagc tgcgaacgcg
      361 atctttcttc agtacaccgc tcccgtttat ctgctcatct tcgagccgct cgtttacaag
      421 gaaaagttcc ggctgcgcga cttgatcacg gttctcgtgt gcatcggtgg aatgactttg
      481 ttttttgtcg gcaagctacg cccggaagat gtggttggta attttttggc actcgcatca
      541 ggtgtttgtt tcgcggcgta ttttctgttg cttcgacact cgacagctcg tcttgtgaat
      601 cgagcttcat cggcgattta cggaaacctg ctcgtcgtgt tggttactgc gccatgggga
      661 ctctcagcct taacaagcct ggatcgccac gacacgctaa gcgtgatcta tcttggtgta
      721 attcagatcg gtcttgctta cacgttgttc acggtagcaa tggcgcgcgg ggttagatcg
      781 ctcgatgccg gaatcatcgg ctacgccgag cctgtgctaa atcctatctg ggtattcctg
      841 gtgcttggtg agaagccttc tgagtgggct ctacttggcg gagcgatcat catcgttgcg
      901 gtgatcgttc acatgctgat ggacgcgaag cggaagagaa gtgaaattgt ccgataagct
      961 ttagcttttc gttgacccgg cggaggacgc ctttgattaa gtcaacgaca agctaaagat
     1021 tatcggacat cagttgaaca gttgagaaac cacgaactca aatcccgcta atacctttga
     1081 cctcgcttga tcttgatcct gaagttcggt gctcggttgg agacgctctt gttcgagcac
     1141 tcgtacttca accgttcgcc gatcttcatc aatcagccac aactccttca ctccg
//
LOCUS       DATCGC010000845         1147 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_245353, whole genome shotgun sequence.
ACCESSION   DATCGC010000845 DATCGC010000000
VERSION     DATCGC010000845.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1147
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245353"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..523
                     /locus_tag="VIJ87_08155"
     CDS             <1..523
                     /locus_tag="VIJ87_08155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444425.1"
                     /translation="SKYDADGNRTEWLQYEGDALRYKIISSYDSKGRVLEAETFEFNG
                     NPNIITSHAPEPGKVVYNYDDEKRTKEVAAYEVNGKLKSKFVYTYDDRGNEIGRTQFN
                     GDGSPKDLEIQFYDNIYQAGSPFRGTLSGRSLMNIEYDSHGNWTKKTRLVQSEKGGLP
                     QAYNAELRVITYY"
     gene            554..1003
                     /locus_tag="VIJ87_08160"
     CDS             554..1003
                     /locus_tag="VIJ87_08160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444426.1"
                     /translation="MKRYFVYATVSLLTFAFGISLFHLRPGKRRDEPRSTPLLVMVSQ
                     PSSISSRQYRTITIKNVSDRIVRGYSLGHTCNCRSWDSYDRPYPEGVTYSNPIPEQQL
                     LQPGESQELMFETDSSRELEVWVDLVHFQDGPNWGPNQSHKEGYVRQ"
BASE COUNT          328 a          263 c          289 g          267 t
ORIGIN      
        1 ttcaaagtac gacgccgacg gaaacagaac ggagtggctt cagtacgagg gagacgcgct
       61 caggtacaaa atcatttcca gctatgacag taaaggtaga gtcctggagg ccgaaacctt
      121 tgagttcaat ggcaacccaa acataattac gtcacatgcg cccgaaccgg gaaaggtcgt
      181 gtacaactac gacgacgaga agcgaacaaa ggaagtagct gcttatgaag tcaacggaaa
      241 attgaagagc aagtttgttt acacgtatga cgatcgagga aatgaaattg gacggacaca
      301 gttcaatgga gacggttcac cgaaagacct cgagatccag ttttacgaca acatttatca
      361 agcaggaagt ccgtttagag gcaccctcag tgggagatcg ttaatgaaca tcgagtatga
      421 ctcacatggg aactggacga agaaaacacg cctcgtccaa tctgaaaaag gtggactgcc
      481 gcaggcgtat aatgcggagc tgcgggtaat cacttattac tagtgtaagc gggcaacacc
      541 gggaggagac atgatgaaac gctattttgt ttatgccact gtttcgcttc tgactttcgc
      601 cttcggcatc tccctattcc acctcagacc agggaagcga cgggatgaac caaggagcac
      661 tcccttgctc gttatggttt cacaaccgag ttcaatttct tcacgccagt atcgaaccat
      721 taccatcaaa aacgttagtg atcgaatcgt gcgcggctac tccctgggcc atacgtgcaa
      781 ttgtcgctct tgggatagtt atgatcgtcc ttacccggaa ggtgtaactt attccaatcc
      841 gattcctgag caacagcttt tgcaacctgg cgaatctcaa gaattgatgt ttgaaactga
      901 tagttcccgg gaactagagg tttgggtcga tcttgttcac tttcaagatg gacctaactg
      961 gggccccaac cagtcgcata aagaaggata tgttaggcag tagcgtcggt ataaacgagg
     1021 tacagccaac gatgaagcga tcaacgatga tttcgttctt actcgtggtt tgcatcggcg
     1081 taagttccca aatctttgcg caacgtaagg cagtcagcgg cacggaagtg actggaactt
     1141 ttcgcta
//
LOCUS       DATCGC010000846         1164 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_410725, whole genome shotgun sequence.
ACCESSION   DATCGC010000846 DATCGC010000000
VERSION     DATCGC010000846.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1164)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1164)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1164
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_410725"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(144..926)
                     /locus_tag="VIJ87_08165"
     CDS             complement(144..926)
                     /locus_tag="VIJ87_08165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444427.1"
                     /translation="MQRRTLTELAGNPELISGIYNYCDRWCERCPLSSRCLLYATEQE
                     DDDQSPETRDIQNEAFWKKLASIFQETREMVMEWAQEAGVDLNQWTEEDELHLRKKRR
                     RADSHPLARAGKKYANDTSDWFREFDQMVEVSDLASTDADIDEAERLIDAREIIHWYQ
                     YQIAVKTMRALSSSFDEQEYDDEENSFPKDSDGSAKVALLGIDRSIAAWRLMQLSVPD
                     RAESIVPLVFQLERLRQRTERQFPSARDFVRPGFDEVLGAAN"
BASE COUNT          291 a          302 c          278 g          293 t
ORIGIN      
        1 aaaggtcgat gatccagaaa cacaagggaa tcagcgtctt cgtgaacaat gaccgccttt
       61 gtagctccgg acacaatact gcaaaacaga cagctgtcat cgttcattta cttgattccc
      121 tttcgtgttg aagttcgatt agtttagttt gcagcaccca aaacttcgtc aaagccaggc
      181 ctaacaaaat cccgcgcact cggaaactgt cgttccgtcc gctggcgtaa tcgctccaac
      241 tgaaaaacca acggaacgat cgactctgcg cgatctggca cagacaactg cataagacgc
      301 catgcggcta tcgagcgatc gatgccaagc aaagcgactt tcgcagaccc atcggagtct
      361 ttcggaaacg aattttcttc gtcgtcatac tcctgttcgt cgaaactgct agacagcgca
      421 cgcatcgttt ttaccgcgat ttggtactga taccagtgaa ttatctcacg agcgtcgatt
      481 aatcgttccg cttcatcaat atctgcatca gttgaggcaa gatcgctaac ctccaccatt
      541 tggtcaaact cccgaaacca atcactcgtg tcgtttgcgt atttcttgcc cgcgcgcgcg
      601 agtggatgac tatcagctct gcgtcgcttc tttcgaaggt gcagttcgtc ttcctcggtc
      661 cactggttga ggtcaacgcc tgcttcctgg gcccactcca taaccatttc gcgagtctcc
      721 tgaaagattg acgcgagctt tttccaaaag gcttcattct ggatgtcgcg ggtctccggt
      781 gattgatcgt catcttcttg ctcggttgcg tacaacaagc agcgagaaga taaaggacaa
      841 cgttcgcacc agcgatcgca atagttgtag attccagaaa tcagctcagg attaccagct
      901 aactcggtga gagttcttcg ttgcatgagg ttttctcctt agagtatgag gtttttaggt
      961 ggggcgcatt gtaagatacc gagccgcgaa atgacagcaa atgcgaacaa gaactttgcc
     1021 cgagcaatga acattttgga gaacaacggg ctgctcctgc taagaggtac agagatagcg
     1081 gacatctgtg gattggttac ctcacaaaga atcaaaggct catggtgggg agatccggct
     1141 ggtccagaaa tcttcgcgct cggc
//
LOCUS       DATCGC010000847         1784 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_344261, whole genome shotgun sequence.
ACCESSION   DATCGC010000847 DATCGC010000000
VERSION     DATCGC010000847.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1784
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_344261"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            235..1626
                     /locus_tag="VIJ87_08170"
     CDS             235..1626
                     /locus_tag="VIJ87_08170"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HEY5444428.1"
                     /translation="MTQTEPEQKDTHLLRRFGLLQATALNMSNMIGVGPFITIPLLMS
                     ALGGPQAMLGWLVAVLIAIPDGMVWSELGASMPGSGGSYLYLREAYGREKFGRLLAFL
                     FIWQFILSGPLEIASGYIGFARYTGYIWQGITSRQTFLVAATIGVVNIVLLYRRITSI
                     GKITVSLWIGTLLTTLVVIFTGVMHFSAARAFDFPPHAFSFSLGFLFGLGAASRIGVY
                     DYLGYYDVCYIGDEVKDPGRTIPRSIIISVICVAIIYFAINLSIIGVVSWRDFVPAGD
                     HPESGFIVSVMMERIWGPKFAVIFTAMVLWTAFGSVFALLLGYSRIPYAAALDGYFFK
                     VFGRLHPTKRFPYVAVIVLGLISIICSFFSLDIVIDALITTRILVQFIGQIFALTLLR
                     RNQPNMVRPYRMWLYPVPSIIALAGWIFIFSTADKMVILLGLGTLGLGAIFFLIWSWR
                     SQRWPFDEAAVQP"
BASE COUNT          369 a          462 c          452 g          501 t
ORIGIN      
        1 agagtagtgg ttaataaggc agtccaggaa gaacaagctg ggaaggggca cgcaagtagt
       61 acagacttca gtctgtgttt gaatcaacta caagctacga cgagcaaaga tgagctttag
      121 tacctccaaa tcaatcccca cagactgaag tctatgccac acactccctc cgatctcaaa
      181 taactttctt tacgaattcc aatcttcgga tatcatgggc atccttctat ctcgatgacc
      241 caaacagaac cagaacagaa agacacacac ttactccgtc gattcggact gcttcaagcc
      301 acagccttga acatgtcgaa catgatcggt gttggaccgt tcatcaccat tccattgctc
      361 atgtctgccc ttggtggtcc gcaagcaatg ctcggatggc tggtggccgt gctaattgcc
      421 attcccgacg ggatggtgtg gagcgaactt ggtgcgtcga tgccgggttc gggcggctcg
      481 tatctttatt tgcgtgaagc ttatggtcgc gagaaatttg gtcgactgct tgcgttcctt
      541 tttatctggc aattcattct aagcggtcca ctggaaatcg catctggcta catcggcttc
      601 gccaggtaca ccggttacat ctggcaagga atcacctcac gccaaacatt tctagtggct
      661 gcaactattg gtgtggtcaa cattgttctc ctgtaccggc gaatcacttc aattggaaag
      721 ataaccgtga gtctctggat cggtacgctg ctgacgaccc tcgttgtaat ctttactggc
      781 gtcatgcact tcagtgccgc gcgtgcgttt gactttcctc cacacgcctt tagtttttcg
      841 ctcggattcc tctttggtct tggcgcggct tcgcgcattg gtgtttacga ctacctcggt
      901 tattacgacg tttgttatat cggcgacgaa gttaaggacc ccggcagaac aattccccgt
      961 tcaatcatca tcagcgtgat ctgtgtagcg atcatctact tcgcgatcaa tctttcgatc
     1021 atcggcgtgg tgtcatggcg agactttgtg ccagccggcg atcatccgga gtcgggtttc
     1081 atcgtctcgg tgatgatgga acggatctgg ggcccgaagt tcgccgtgat atttacggca
     1141 atggtgctat ggacagcttt tggatccgtc ttcgctctgt tgctgggcta ttcacgtatt
     1201 ccgtacgccg ctgcgcttga tggctacttc tttaaggtgt tcggtcgcct gcatcctacg
     1261 aaacgatttc cgtacgtggc ggtcatcgtg ctgggactga tctcgatcat ctgtagtttc
     1321 ttctcgctgg atattgttat tgatgcgctc atcaccacgc gcattctggt tcaattcatc
     1381 gggcagatat tcgcattgac actcttgcgc aggaaccagc caaacatggt tcgtccctat
     1441 cggatgtggc tttatcccgt accgagcatc atcgctttgg ctggttggat ctttatcttt
     1501 tcgaccgctg ataaaatggt gatcctactt ggactcggaa ccctgggatt aggcgcaatt
     1561 ttctttttga tctggtcgtg gcgctctcaa cgttggccgt ttgatgaagc ggccgtgcaa
     1621 ccttgattag ccgtcgtagc cctatgagtt ctctgcctgt tctcataaaa gcctgcgaag
     1681 caggcggaaa gcgtaaagcc tcgggcgtat gccccaggac atgtagtttc gcaataatga
     1741 gcccggtcgc gcgggcggaa gccttcgaac cgaggcgttc ctgg
//
LOCUS       DATCGC010000848         1624 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_377879, whole genome shotgun sequence.
ACCESSION   DATCGC010000848 DATCGC010000000
VERSION     DATCGC010000848.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1624
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_377879"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..480)
                     /locus_tag="VIJ87_08175"
     CDS             complement(<1..480)
                     /locus_tag="VIJ87_08175"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEY5444429.1"
                     /translation="MKQIKHNHSRGAHLEARTVKDIIKPAESILNKVCVKEALDEMQA
                     RAVDSSPVIDQRGELLGTVSKNKMNREVGGFGHDPKTEPVEAHIEQNSPYCFEDQTVA
                     AAEQMMLNTKIGEVFVVTREKLLVGTINIESIVAQKHGRKDPLGASERSAPRSITLRF
                     "
     gene            complement(586..1008)
                     /locus_tag="VIJ87_08180"
     CDS             complement(586..1008)
                     /locus_tag="VIJ87_08180"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HEY5444430.1"
                     /translation="MEEATQNRFNRFLGGFPNRIGTGETHSLTVADWSPEVDISQDNH
                     EYLLKADLPEMKKDDVRVTVEDGILCVSGERKSEKEDQKRKFHRIERSFGNFRRSFTL
                     PEDADSTKVTAEFHDGVLKVHLPTTTKARSKAIEVKVA"
     gene            1312..1384
                     /locus_tag="VIJ87_08185"
     tRNA            1312..1384
                     /locus_tag="VIJ87_08185"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1345..1347,aa:Ala,seq:cgc)
BASE COUNT          329 a          435 c          397 g          463 t
ORIGIN      
        1 gaaccggagt gtgatgctcc taggggccga tctctcagaa gctcccagtg ggtcttttct
       61 tccatgtttc tgcgctacaa tcgattcaat gtttattgtt cctaccaaca atttttcgcg
      121 ggttactaca aaaacttcgc cgatctttgt gttgagcatc atttgctccg ccgcagcaac
      181 cgtctggtcc tcgaagcaat aggggctgtt ttgttcgatg tgtgcttcta ccggttctgt
      241 cttgggatcg tggccaaaac cacccacttc ccggttcatt ttgttcttcg acaccgtccc
      301 caataattcg ccgcgttgat cgattacagg tgacgaatcg actgcccggg cctgcatttc
      361 gtccaaagct tcctttacac aaaccttatt aagaatgctc tccgcaggct tgatgatgtc
      421 cttgaccgtg cgggcttcga gatgcgcgcc ccgggagtgg ttgtgtttta tctgtttcat
      481 tgtttagaga ccaacgttgg ttaaattaga gttcaataag ttagcagctt tacactgggg
      541 ctcgcgcacg gaaccctccg tacgctcgcc gtcagtgtta gcgcattacg ccactttaac
      601 ttcaatagct tttgatcttg ctttcgtcgt tgtcgggagg tgcactttca gtactccgtc
      661 gtggaactcc gccgtcactt tcgtgctatc ggcatcttcc ggcagggtga agctgcgtct
      721 gaagttacca aaggatcgct cgatgcgatg gaattttctt ttctgatctt ctttctcgct
      781 tttgcgttct ccggaaacgc acaggatgcc atcttcgact gttaccctaa cgtcatcctt
      841 cttcatctca ggcaagtcag ctttgagcag gtactcgtga ttatcctgac taatatcaac
      901 ctccggtgac caatctgcga cggtcaggct gtgggtctcg ccggtgccta ttctgttcgg
      961 aaatccgccc aggaaacgat taaagcggtt ttgcgtcgct tcttccatct ctctcagctg
     1021 attccatgtt attaatgtat tcatgttata tttacctttc tgaactgact agaagccatg
     1081 tccgtccctc acgcgcaccg cttattgtca gactcaaccc taatcttgtg gtcgacgtcc
     1141 gaggagcttt taccgccctg gcagccgtga aaacgccgag cattttgcct ggggcggtgg
     1201 aaatcggtca ggcgatcctg atgcggttgc cacgaaaatc ggccttcccg ctgattttcg
     1261 tgttttgcat taattgcgga ttcctcgcat aatctgcagg tgcgatcatt tgggggtata
     1321 gctcagttgg tagagcgtct cgttcgcaat gagaaggcca ggggttcgaa tccccttacc
     1381 tccagtcttc gctcgcgtcg tagaggagag cgaagactgt cgcgccgtag cttcagcgaa
     1441 ggcggacacg tttaccttgc aacgtcaacg cggcgagcta cgactcggca agccagcaag
     1501 cgcataagcg catgggaaag tttttctaca tctatatctt gcagagtgag cgcgatgagg
     1561 accaattcta cactggctta acagacgacc tgcgtaaacg aatcaggagc cataacgccg
     1621 gccg
//
LOCUS       DATCGC010000849         1386 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_410733, whole genome shotgun sequence.
ACCESSION   DATCGC010000849 DATCGC010000000
VERSION     DATCGC010000849.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1386)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1386)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1386
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_410733"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1386
                     /locus_tag="VIJ87_08190"
     rRNA            <1..>1386
                     /locus_tag="VIJ87_08190"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          334 a          333 c          435 g          284 t
ORIGIN      
        1 attcctgcac cgccaactga ggttcgaagt gcgtcaggac gttttcccga aagcgatcgg
       61 ggtgctagac atccccgtgc cgcaaggccg aagccattta tgatgctgaa gtcgttggaa
      121 ggagagccaa gaaaagccga cgctctacga agttggcgcc cgtactaaaa ctgacacagg
      181 taggcgagat gaatattcta aggcgctcga gagaatgctc gtgaaggaac tctgcaaatt
      241 aactccgtaa cttcgggaaa aggagtgccc ctgagggtgt caaagcccac gggggtcgca
      301 gttaaaaggg tctagcgact gtttactaaa aacacaggac tctgcgaact cgtaagagga
      361 tgtatagagt ctgacgcctg cccggtgtcg gtaagttaag gaagagggtt atccgggtaa
      421 ccggagaagc tcgcaaccga agctccgata aacggcggcc gtaactatga cggtcctaag
      481 gtagcgaagt tccttgtcgg gtaagttccg acctgcatga atggcgtaac gactggacca
      541 ctgtctccac gagctactcg gtgaaactgt agtcgtcgtg aagatgcgac gtacccgcag
      601 ttagacggaa agaccccgtg aaccttaact gtaggatagt attgggttta ggcccgacat
      661 gcgtagcgta gctgggacac tgtgaaggga gcgtttcggc gcttccggag tggccgatga
      721 aacaccagcc ttgtcgtgct tgaattctaa ctcgtgtcac aaccacgtgg acagttctat
      781 ctgggcagtt tgattggggc gatctcctcc taaaaggtaa cggaggagtg caaaggtacc
      841 ctcagcccgg ttggcaatcg ggcagcgagc gtaaacgtag aagggtgctt gactgcgaga
      901 ccgataggtc gagcagggac gaaagtcggc gttagtgatc cggtggtcct gaatggaaag
      961 gccatcgctc aacagataaa aggtactccg gggataacag gcttatgact cctgagcgtt
     1021 catagcggcg aggaggtttg gcacctcgat gtcggctcat cacatcctgg gggtggagaa
     1081 gctcccaagg gttcggctgt tcgccgatga aagtggtacg tgagctgggt ttagaccgtc
     1141 gtgagacagg tcggtcccta tctgctgtgg gcggaggaaa cttgcggggc tttctcccta
     1201 gtacgagagg actgggaggg acacacctct gatgttccag ttgtggcgct agccgcaccg
     1261 ctgggtagtc acgtgcggcc gggataaacg ctgaaggcat ctaagcgtga aaccctccgc
     1321 gagatgaggc ctcccgcact taacgtgcga aggctcctgg tagactacca ggtcgatagg
     1381 ccgggc
//
LOCUS       DATCGC010000850         1592 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_377934, whole genome shotgun sequence.
ACCESSION   DATCGC010000850 DATCGC010000000
VERSION     DATCGC010000850.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1592)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1592)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1592
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_377934"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            20..>1592
                     /locus_tag="VIJ87_08195"
     CDS             20..>1592
                     /locus_tag="VIJ87_08195"
                     /inference="COORDINATES: protein motif:HMM:NF019758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444431.1"
                     /translation="MRSFVQENPEVRGHRHWDAITKGGVASHHAGHIPAWKLVIEKLM
                     SAGLLDAIFATATVAAGVDFPARSVVLTGADKRTGSGWRMLSASELQQMTGRAGRRGR
                     DNVGFVVAAPGLHQDPECIAKLLKAKPDPLVSQFRATYTTLLNLLDAYGSFAGVREIA
                     ERSFAYRDLAQQIHQLEKSQRDAEQTIEERIKNAGFGLPVSAALGLERLVAARARLNE
                     AKPQTRAELFHNWLNEVVKPGRIVGVGRSGKRLVMVFEKRDGSIRGFRDDGSSASFPQ
                     ERIGRVYSRVYRLREEEIEQAFNEVRQRGKELVLPEPRLRDADEEEADTLRVFDDTID
                     QLLPAEINGADRLRGTELLWELHEIAEDHQRATRRIAALRDDVWEPFEQRAKVLSAFG
                     YLDFESEQVTERGRWLADLHIDRPLLVGEALESGLFNSLQHKHFAGIMAALTADEDRD
                     YGELELDDELITSLTRFEDIGFKVSGEEWKQGVEPSPELNFSAAGAAVHWAGGAEWSD
                     IVRRTRAEEGDLFRMF"
BASE COUNT          370 a          384 c          489 g          349 t
ORIGIN      
        1 agaggcacga ctcgaattca tgcgatcgtt tgtacaggag aacccggaag ttcgtggcca
       61 cagacactgg gacgcaatca ctaagggcgg ggtcgcttca catcacgccg gtcacattcc
      121 tgcctggaaa cttgtaatcg aaaaactaat gagtgctggt ttgctcgacg ccatatttgc
      181 tacggccaca gttgcagctg gcgtcgactt cccggcccgc agtgtggtcc taaccggcgc
      241 tgacaagcga actggcagtg gctggagaat gctcagcgct tctgaactcc aacaaatgac
      301 tggtcgcgcg ggacgacgtg gacgcgacaa cgttggcttt gtagtcgctg cgccaggtct
      361 gcatcaggat ccggaatgta ttgcaaaact tcttaaagcg aagcctgacc cgctggtgag
      421 ccagtttcgt gcgacctaca cgacactgct caacctgctg gatgcttacg gaagttttgc
      481 cggcgtgcga gaaattgctg aacgcagttt cgcctatcga gatcttgcac agcagataca
      541 ccagctggaa aaaagtcagc gagacgccga acaaacgatt gaagaaagaa tcaagaacgc
      601 aggctttggt ctgccagttt ccgctgcgct tgggttggag cgtctcgttg cggcgcgggc
      661 ccggctaaac gaagcaaagc cacaaacgcg tgcagagctt tttcacaatt ggctgaacga
      721 ggttgtgaag ccaggtcgca tcgttggcgt tggtcgtagt ggaaaacgtc tcgtgatggt
      781 gtttgaaaaa cgcgacggta gcattcgcgg atttcgtgac gatggaagta gcgcgagttt
      841 tccacaggaa cggattgggc gagtctattc gcgagtctat cgacttcgcg aggaagagat
      901 tgagcaagcg tttaatgagg ttcgtcagcg tggaaaagaa ctggtacttc cggagccacg
      961 cctgcgcgac gccgacgagg aagaggcgga tacgctgagg gtttttgacg acaccatcga
     1021 ccaactgttg cccgcagaga tcaacggggc cgacagactg cgaggcacag agttgctctg
     1081 ggagttacat gagatcgccg aagatcatca gcgtgcgact cgtcggattg cagccttgcg
     1141 cgacgatgtt tgggaaccgt ttgagcaacg agcgaaagtc ttgtcggcat tcggatacct
     1201 tgacttcgaa tctgagcagg tcaccgaacg agggcgctgg ctggcggatc tgcacatcga
     1261 tcgtcctttg ctagttggcg aggcgcttga gagtggatta ttcaattcac tgcagcacaa
     1321 acattttgcc gggatcatgg ccgcgctcac ggcagatgaa gatcgcgact acggcgagtt
     1381 ggagttggac gatgaactca taacttcgtt gactcgcttt gaggatatag gcttcaaagt
     1441 ttcaggcgag gaatggaagc aaggtgtgga accttctccg gagttgaatt tctcggccgc
     1501 tggtgcagcg gttcactggg cgggtggtgc tgagtggtca gacatagttc gacgaacgcg
     1561 cgctgaagag ggagatttgt tccgcatgtt ct
//
LOCUS       DATCGC010000851         1895 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_445701, whole genome shotgun sequence.
ACCESSION   DATCGC010000851 DATCGC010000000
VERSION     DATCGC010000851.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1895)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1895)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1895
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_445701"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(207..848)
                     /gene="rsmG"
                     /locus_tag="VIJ87_08200"
     CDS             complement(207..848)
                     /gene="rsmG"
                     /locus_tag="VIJ87_08200"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: protein motif:HMM:NF014575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA];
                     GO_process: GO:0046118 - 7-methylguanosine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HEY5444432.1"
                     /translation="MASNDKGERFTSSLKAGMGNYALDLSEQTILQLSEYYSLLTRWN
                     ERLHLVAPCSPEEFAQRHILESLILLRFFPINASVVDIGSGAGLPIIPCLIARSDLTA
                     TLIESSQKKSVFLREALSQIGLAKRGSIAAKPFEEVDPPAVMFVTCRALDEFMNKVSA
                     LVNWAPKQSTLLLFGGESLRRQLETLEVRYTEFLIPLSEKRFLFEVVRTSQSR"
     gene            987..>1895
                     /locus_tag="VIJ87_08205"
     CDS             987..>1895
                     /locus_tag="VIJ87_08205"
                     /inference="COORDINATES: protein motif:HMM:NF012503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY5444433.1"
                     /translation="MIDDIVEQHKYLGEAVAKLIVEQVSQLDTRRVAPESTPSEIEKL
                     FNEPLPESGVSLEAILKRFRDEIAPNSMLVPSPRYFGQFNPTPLPIGVWADALAAMLN
                     QNAGAWRNGPASTMIEARTIRWLCDLVDYGPRSFGTLASGGSEANLLALKCARDNAVK
                     TIKDRGLRTAPGDLIIYASEQCHYSIDKSADLLGLGREGVRKIPTDERFHIRLKDLRE
                     AIQRDRANGAIVCCIVGVAGTTSTGVIDPLEELAAIALENKCWYHIDAAYGGPLAFSN
                     EHKDKLNGIALADSITFDPHKWMFVPF"
BASE COUNT          469 a          514 c          481 g          431 t
ORIGIN      
        1 acacgaatca acacgaaatc aaaccaacac gaaatacagt tcgtgatgtt tcgtgtgagt
       61 tcgtggatcg tagcttttgg ttgcggctga ggccccgctg tgtctctgcg gtgaaatcta
      121 cctcagcaac tcattcaacc acagagacac agaggacaca gaggtagcac agagattcca
      181 aattggccac agagattcca aattggctac cgactctggg aggtacggac tacctcaaac
      241 aagaatctct tctccgacaa cggaatcaga aactcggtat accgaacttc aagtgtctct
      301 agctgtcgtc ttaaactctc tccgccaaac aacaacagcg tgctttgttt aggcgcccaa
      361 ttcaccaacg cggaaacctt gttcataaat tcatcgagcg cacgacaagt tacgaacatc
      421 actgccggcg gatcgacttc ttcaaatggc ttcgcggcta tactccctcg ctttgctaag
      481 ccaatttggc taagcgcctc gcgcagaaat accgacttct tttgtgacga ctcgattagt
      541 gtagctgtca gatctgaacg cgctatcagg cagggaatga ttggcagacc tgcaccagac
      601 ccaatgtcga caacggacgc attgatcgga aaaaatcgca acaggatgag cgactcaagt
      661 atgtgccgtt gagcaaattc ctccgggctg catggggcaa cgagatgcag acgttcgttc
      721 cagcgcgtta gcagggagta gtactcagac aactgcagaa tcgtttgctc agagaggtcg
      781 agagcatagt tccccatccc cgccttcagc gagctcgtga accgttcgcc tttgtcattg
      841 cttgccattg actctttgga gtgcggtggc ccggcaccgc tttagtaaag atattgaagc
      901 gccaattaac aaagcggtgc cgggccaccg cactccaggg agacgtcctt tgccacgtcc
      961 ggctcgggcg tcatattctt acccacatga tcgacgacat tgttgagcaa cacaaatatc
     1021 tcggagaggc cgtcgccaaa ctcatagtgg agcaagtatc ccagctcgac acccggcgag
     1081 ttgctccaga gtctactcca tccgagatcg aaaaactttt caacgaaccg ctaccagaaa
     1141 gcggcgtaag tctcgaagca atcctgaagc gcttccgtga tgagattgct ccaaactcga
     1201 tgctggttcc cagtccaagg tacttcggcc agtttaaccc gacgcccctt ccgattggtg
     1261 tttgggcaga cgcgctcgcc gcgatgctca atcaaaatgc tggcgcgtgg cggaatggcc
     1321 cagcgtcaac aatgatcgaa gccaggacca ttcgctggct gtgtgacctg gttgattatg
     1381 gtccgcggtc ttttggaacc ctcgcgagcg gcggttcaga ggcaaatctg cttgccttga
     1441 agtgcgcacg cgacaacgct gtgaaaacca tcaaagaccg tggattgcga acggctcctg
     1501 gtgacctgat tatctatgct tccgaacagt gtcactattc aatcgacaag agcgccgacc
     1561 tcttgggttt gggacgtgaa ggtgtgcgca agattccaac tgatgagcga ttccatattc
     1621 gtctcaaaga ccttcgcgaa gcgatacaac gggaccgggc caacggcgcg attgtttgtt
     1681 gcattgtggg tgtagccggt actacctcga cgggagtcat tgaccctttg gaagaacttg
     1741 ccgctatcgc acttgagaac aagtgctggt atcacatcga tgctgcctat ggcggaccgc
     1801 tcgcgttttc gaacgaacac aaggacaagc tgaacgggat cgcactcgca gattcaatca
     1861 cttttgatcc gcacaagtgg atgtttgtgc ctttt
//
LOCUS       DATCGC010000852         1460 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_410765, whole genome shotgun sequence.
ACCESSION   DATCGC010000852 DATCGC010000000
VERSION     DATCGC010000852.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1460)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1460)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1460
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_410765"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1086)
                     /locus_tag="VIJ87_08210"
     CDS             complement(<1..1086)
                     /locus_tag="VIJ87_08210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444434.1"
                     /translation="MHVALLFPPSVDPRAPHLAIPSLAAFLRANGVRVTVRDLNLEGF
                     VWATKYAQLVEAERTARARLDTASESERPKLRQVLARAPFVVNAAEEAIATLRDDEAF
                     YDPDRYNEARNTLRSALALMSAASGRVNYAFSNAVYEVEGCNSWRLTDLDQATADSGT
                     NVFLPFWEEQVFPSLAADRPDFVGISILNGQQILPGLTLARRLRERGHTVLIGGTVYS
                     KFVPQLMKQPDFFRLFCDGLVPYEGEPALRAIALGAWEGEPAGIPNLMRLDAKGNPVI
                     GPACVETVDDLPVPDFSDLHLSDYLAPKPVLPILTGKGCYFNRCKFCDIPHINSISTK
                     NYRVRRPDTVAADIAALYKNHGARHFVI"
BASE COUNT          360 a          377 c          398 g          325 t
ORIGIN      
        1 aatcacaaag tgacgagcac cgtgattctt ataaagagcc gcgatgtcgg cggctactgt
       61 gtcgggtcgt cgaacgcgat agttcttagt tgagattgag ttgatgtgcg ggatatcgca
      121 gaacttgcag cgattaaagt aacaaccctt gccggtcaga atcggcaaca ctggtttcgg
      181 cgcgagataa tcactgagat gaagatcgga gaagtccgga actggtagat catcgacagt
      241 ctcgacgcaa gcgggtccaa tcaccggatt tcctttagca tcgagtcgca ttaagtttgg
      301 aatgccggcc ggctcgcctt cccaagcgcc taaggcaatt gcgcgcaacg ccggctcacc
      361 ttcgtaggga actaatccat cgcagaacaa acggaaaaaa tccggttgct tcatcagttg
      421 gggaacgaac ttggagtaca cagtgccgcc gatcaggacc gtgtgaccgc gttcgcgcaa
      481 ccgtcgcgca agcgtgagcc cgggaagaat ctgctgccca ttaaggatgg aaataccgac
      541 aaagtcggga cggtcagccg cgagtgaggg aaaaacctgt tcttcccaaa acggcaaaaa
      601 gacattcgtt ccagaatcgg ccgtagcttg atccagatcc gttagccgcc atgagttgca
      661 cccttcgact tcgtagacag cattgctgaa cgcgtaattg acacgacccg atgccgccga
      721 catcagagca agagctgaac gcaaagtgtt ccgcgcttcg ttgtagcgat cagggtcata
      781 aaaggcttcg tcgtcgcgca acgttgcgat ggcttcttcc gccgcattga ctacaaacgg
      841 agcgcgagcc agcacctgac gaagctttgg tctttcactc tccgatgccg tgtcgagtcg
      901 agcgcgtgca gttcgttcgg cctcgaccag ctgagcatac ttggtcgccc agacgaatcc
      961 ctccaaattc agatcgcgga cagtgacgcg gacgccattc gctcttaaga aagcagcgag
     1021 cgacggtatc gccaaatgag gtgcgcgcgg atcgacagaa ggtggaaaaa ggagagcaac
     1081 atgcataacc ggtggaccct ttgaggagtc gttcgtccaa ggttattcgt ttgaatgtta
     1141 gttaggccca gtgtcggtag ggggaagcac ctctgaggtg aacggaccaa cgttccgggg
     1201 gcgctgaata tatcctaaaa actggcacta gtatattatt tttcttgtac tcaatgttcg
     1261 aataaatctg ctgtgtctgc cagcaattcc ggtttagtta gcacttcact ccacatgctg
     1321 tgaccacacc agtaccaaaa gttaacaatg aatcagtcga cctcccggct cccggtgccg
     1381 ttcgggtgtc cttggctgat cgaattcaaa ttgctgatga agctgtcggt cgcattgcgg
     1441 cttttcccat tgagatgttg
//
LOCUS       DATCGC010000853         1216 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_479801, whole genome shotgun sequence.
ACCESSION   DATCGC010000853 DATCGC010000000
VERSION     DATCGC010000853.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1216)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1216)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1216
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_479801"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(143..>1216)
                     /locus_tag="VIJ87_08215"
     CDS             complement(143..>1216)
                     /locus_tag="VIJ87_08215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444435.1"
                     /translation="GTNAAVNPDSSRQVALPLLSPAFIQTRINEAQRLLKSRPLATAM
                     TAPSIDFVTVVALDQNSSRTHLLTFPKQTFLTKGSELTITSSLGTPLTVRVLRANGVN
                     TALTVFTPQGQSLVPLIVEYPIERNGLFREMAYYTSAHPALLSKDLTRSGQLYVRNMI
                     DLAVKRLKERGVSISPDIVNVAERLCLIEHIDHDRFKNENRIALYDEIYSLYALNELD
                     TYRYSVSSAGAGGMVQMIPWAYNLERQRHPGVGLIPDFVTAMRNHANALQAMLLYMQD
                     TWNELSANEDVKSALNGKLATTSELLAAGYNSNAAKLPGYIRRGGEDWKTLIPRETQM
                     YLQIYKSFESLVPMKQRTLVTAD"
BASE COUNT          286 a          310 c          319 g          301 t
ORIGIN      
        1 ctaaagctga atagggctga cggcctgtgg cgagttcctc gttggcgcct ttcgttcggt
       61 ccacatccca aaagcaggaa gggcgcccat ggcggacgcc cttacaaatt ggacatgacc
      121 gaagttggat ttaactcccg aattagtcgg ccgtcaccag agttcgctgc ttcataggca
      181 ccagcgattc aaacgacttg taaatctgca ggtacatctg cgtctcacgc ggaatcagag
      241 tcttccaatc ttcaccaccg cgtcgtatgt atccgggaag tttggcggcg ttggagttgt
      301 aaccggccgc tagcaattca ctggtcgtgg ctagtttccc attcaatgca gacttcacgt
      361 cttcgttcgc tgaaagttca ttccatgtgt cctgcatgta aagcagcatt gcctgaagtg
      421 cgttcgcgtg atttcgcatt gccgtaacga agtcgggaat taggcccact ccagggtgac
      481 gttgtctttc caggttgtat gcccagggaa tcatctgcac catcccgccc gcgccggcgc
      541 tactaaccga gtagcgataa gtgtcgagtt cgttcaaggc atatagcgaa tagatctcat
      601 cgtagagcgc gattcggttc tcattcttaa agcgatcgtg gtcgatatgt tctataaggc
      661 acaggcgctc ggccacgttc actatgtccg gagatatcga aacacctcgt tccttcaaac
      721 gcttcacagc gaggtcgatc atgttgcgca catacagttg acccgacctg gtgagatctt
      781 tcgacaacaa agctggatgg gctgaagtgt aatacgccat ctcgcggaac aatccgttgc
      841 gttcaattgg gtactcgaca atcagtggca caagtgactg accctggggc gtgaagacgg
      901 taagcgcagt gttaacgcca ttggcgcgca gtactcgaac agtcaatggc gtacccagtg
      961 aactggtgat cgttaactcg ctaccttttg tcaggaatgt ttgttttgga aacgttagaa
     1021 gatgtgttcg agatgaattc tgatcaagcg caaccactgt cacaaagtcg attgacggag
     1081 ccgtcatcgc ggttgccagc ggtctcgatt tcaacagacg ttgtgcttca ttaatacgag
     1141 tctgaataaa tgccggcgac agtagaggca acgcaacctg tcgactggaa tcaggattga
     1201 cagcggcatt agtccc
//
LOCUS       DATCGC010000854         1192 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_245464, whole genome shotgun sequence.
ACCESSION   DATCGC010000854 DATCGC010000000
VERSION     DATCGC010000854.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1192
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245464"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1133)
                     /locus_tag="VIJ87_08220"
     CDS             complement(<1..1133)
                     /locus_tag="VIJ87_08220"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF017464.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M13 family metallopeptidase"
                     /protein_id="HEY5444436.1"
                     /translation="MGLHVLFISDSTQDFKNSAEVTFEVSQGGLGLPDRDYYTKTDEK
                     SASTRDSYVKHVAKMFELLGDDSAKATAEAQTVMGIETKLAEASLTRVEMRNPEKLYH
                     RMTVAQVKELAPAYDWSGYMQKLGVTQKTDVNVATPDFFKVVNPMLSSVPIADWQTYL
                     RWHLINNTAPALPSAFVNEDFNFKGKILQGAQENLPRWKRCSAGTDRVMGEAVGEVWV
                     KKAFPPSAKARALDMVHNLEAALKNDITTLSWMSEATRQQAIKKLDAFLNKIGYPDKW
                     RDYSSMEIDRGPYVLNRARAAAFEKRRDLAKIGKPVDRMEWGMSPPTVNAYYNPQINE
                     IVFPAGILQPPFFDANADDAYNYGGMGSVIGHEMTHGFDDQGA"
BASE COUNT          262 a          313 c          304 g          313 t
ORIGIN      
        1 tgtgctcctt gatcatcaaa cccgtgagtc atctcatggc cgatcacgga acccatgcca
       61 ccatagttgt aagcgtcgtc agcattcgcg tcgaagaaag ggggttggag aatgccggcc
      121 ggaaaaacta tttcgttgat ctgcgggttg tagtaagcat tgacggtggg cggcgacatt
      181 ccccattcca ttcggtcgac aggcttaccg atctttgcca ggtcgcgtcg cttctcgaaa
      241 gcagctgcgc gtgcgcgatt caagacatac ggtcctcgat cgatttccat cgaggaatag
      301 tcgcgccatt tgtccgggta gccgatcttg ttgagaaacg cgtcgagctt cttgatagct
      361 tgttggcgag tcgcttcact catccatgac aaggtggtga tatcgttctt caaggctgct
      421 tcaaggttgt gcaccatgtc taaagcacgc gccttggccg acggtggaaa cgccttcttc
      481 acccaaacct cgccgactgc ttctcccatt acgcgatcgg tcccagccga acatctcttc
      541 cagcgcggca ggttttcctg cgcaccctga agtatcttgc ccttgaagtt gaagtcttcg
      601 ttgacaaaag cagatggaag agcgggtgcc gtattgttga tgagatgcca acggagataa
      661 gtctgccagt cagcaatcgg cacactgctc aacatgggat tgactacttt gaagaagtcg
      721 ggtgtagcta cattgacatc agttttctga gtcacaccta gtttctgcat gtaacccgac
      781 caatcgtaag ctggcgcgag ttccttcacc tgggcgaccg tcatgcgatg gtagagcttt
      841 tccggattcc gcatctctac tcgcgtcagc gaagcttcag caagtttcgt ttcgataccc
      901 atcacagttt gggcttcagc cgttgctttc gctgaatcat cgcccagcag ctcaaacatt
      961 tttgcgacgt gcttaacata ggagtcgcgt gtcgacgccg atttttcatc cgtcttggtg
     1021 tagtagtcac gatctggtag acccaaacca ccttgagaaa cttcaaaggt cacttctgcg
     1081 ctgtttttga agtcttgagt cgaatcagaa atgaagagta catgtagccc cattgaatga
     1141 aagtgggcga tagcatcctg tagtcccgcg acgtctttga tgttcgcgat ac
//
LOCUS       DATCGC010000855         1074 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_211273, whole genome shotgun sequence.
ACCESSION   DATCGC010000855 DATCGC010000000
VERSION     DATCGC010000855.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1074)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1074)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1074
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_211273"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            28..528
                     /locus_tag="VIJ87_08225"
     CDS             28..528
                     /locus_tag="VIJ87_08225"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY5444437.1"
                     /translation="MLRSSIFLPSDCTAQALADFEKLVVEGGAVNPEGLARRIHNASR
                     LLFLRESDDQLIGAGALKHPRPEYRNKVFADARATVSADEYPVELGWVVVAKSYQGRR
                     LSTRIVSELLAFAKNENIFATTRTDERVLSFAFDCGFKINGKPFPSGNGYDLVLYLRN
                     ARDYLR"
     gene            787..933
                     /locus_tag="VIJ87_08230"
     CDS             787..933
                     /locus_tag="VIJ87_08230"
                     /inference="COORDINATES: protein motif:HMM:NF039824.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lmo0937 family membrane protein"
                     /protein_id="HEY5444438.1"
                     /translation="MLWTIIVILLVLWLLGLLGHVGGGLIHLLLVIAIIVLIINLIQG
                     RRGV"
BASE COUNT          245 a          285 c          287 g          257 t
ORIGIN      
        1 gctctgcatt cgtaactcga cgctgcgatg ctaagatcgt caatattctt accctcagat
       61 tgcacagccc aggcgctagc cgatttcgag aagcttgtcg tcgaaggcgg cgccgttaat
      121 cccgaaggcc ttgcccgacg catccacaac gcctctcgcc tgttattcct acgtgagtca
      181 gatgaccaac tcatcggagc aggcgcgttg aaacacccca gaccggagta tcggaataag
      241 gtgttcgccg atgcgcgggc taccgtttct gcagatgaat accctgttga gttgggttgg
      301 gtagtcgtgg ctaaatcgta ccaggggcgg cggctgtcga cccgcatcgt cagtgagtta
      361 cttgctttcg ctaagaatga gaacattttc gcgacgaccc ggacagacga acgcgtcctg
      421 agtttcgcgt tcgactgtgg attcaagatc aatgggaaac ccttcccgag cggaaacggc
      481 tacgatcttg ttctctatct tcgaaacgcg cgtgattacc tgcggtgaag taacgagaag
      541 cactgcgtcg ctggcacgca tggttatctg acgagaaaga ggcaagcatc ccggttggcc
      601 gtccgggagc ccgtaagccg tagcgcggct tatttcgacc caagcatgta actgtagtga
      661 gctcgcagtt tgcccgttgt tgtcacgttt tcccatcgtt gaataaactg caaaaaagaa
      721 cttggcgaac agatgacctc tgataaaaca agggatgaaa cctaactcaa ccgaaaggga
      781 ctacccatgc tttggactat aattgttatc ctgctcgtgc tctggctcct tggtttgctt
      841 ggtcacgttg gcggcggttt gatccatctc ctgctcgtca tcgcgatcat cgtgctgatc
      901 attaatctga ttcaggggag acgaggagtt tagcacccaa tttctagttc gaattcccag
      961 tcgctcgcga cagcggccga gttcggtttg acttcgaggt gatttagcga acgaaaccca
     1021 tataagccag aagacggcca tgagctagca tcgctgcgca attgcgacca gccg
//
LOCUS       DATCGC010000856         1007 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_45477, whole genome shotgun sequence.
ACCESSION   DATCGC010000856 DATCGC010000000
VERSION     DATCGC010000856.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1007
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45477"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..344)
                     /locus_tag="VIJ87_08235"
     CDS             complement(<1..344)
                     /locus_tag="VIJ87_08235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444439.1"
                     /translation="MLPSINSNPGRAVLGLLIALSALYSPVRGQACTQQARFYEDEGF
                     TVHHVRIDAPLAWIAGVDVRLNELLSKVPLKDGGRFTVSGYNEGFMVISRSFPELRVN
                     PSSRIAFRLERPA"
     gene            complement(361..813)
                     /locus_tag="VIJ87_08240"
     CDS             complement(361..813)
                     /locus_tag="VIJ87_08240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444440.1"
                     /translation="MPTRKSSRTRAVSRRTQTKKTTEKGRARGGTTETTSKCTPFSVK
                     VAILTPDDTHEIQFGLTKGCNPDNTAFWLIDFLLKEFKNGIPKTRVEVHVTIGADRHG
                     QASTLARTKRLSPESVDLLNGPVADRASRLPAGTTSDKKLGGMLLSTL"
     gene            complement(813..>1007)
                     /locus_tag="VIJ87_08245"
     CDS             complement(813..>1007)
                     /locus_tag="VIJ87_08245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444441.1"
                     /translation="LDVTRREPLLAEIDHFLDCVTTRSTPLVSGIDGRRTLALAFDVL
                     SKIREHSARAGLNLAFDEED"
BASE COUNT          229 a          268 c          268 g          242 t
ORIGIN      
        1 gcaggccgtt cgaggcgaaa agcaattcga gaagaagggt tgacccgaag ttcagggaaa
       61 cttcgactga tcaccataaa cccttcgttg tagccggaaa ctgtgaacct gcctccgtcc
      121 ttgagtggga cctttgagag cagctcgttg agtctgacgt caacgcccgc aatccaggcg
      181 agaggcgcat caatcctcac atgatgaacc gtgaatccct catcctcata gaacctggct
      241 tgctgcgtgc aggcctgacc tcgcacaggg gaatacaacg ctgacaatgc gatcagcagg
      301 ccaagcacag cccggccagg atttgagtta atggatggga gcacggtgtt tcagtgccag
      361 ctagagagtg cttaacaaca taccgcccag cttcttatct gatgtagttc cggctggcag
      421 tcgacttgcc cggtcggcga cagggccatt cagcaggtcc acgctttcag ggctgagcct
      481 cttagttcgc gcgagcgtcg acgcctgacc atgcctatcc gcgccgatag taacgtgaac
      541 ctcaacccgt gttttcggaa tgccgttctt gaattccttc aaaaggaaat caatcaacca
      601 gaatgccgtg ttgtccggat tgcagccttt ggtcaaaccg aattgaattt catgcgtgtc
      661 atcgggggta agtatcgcga ctttgactga gaagggtgtg cacttcgagg tagtttcggt
      721 cgtgccacct cgtgctcgcc ccttttcagt tgtctttttt gtttgtgtcc ttcgggaaac
      781 tgctctagtc cttgaactct ttctggtggg cattagtcct cctcgtcgaa tgcaaggtta
      841 agtccggctc gagctgaatg ctcacgaatc tttgaaagca catcaaatgc aagcgcaagt
      901 gtccgacgac cgtcgattcc gctaacgagt ggtgtgctcc gggtcgtgac acaatcgaga
      961 aaatgatcga tttctgcaag caaaggttca cgacgagtca cgtccag
//
LOCUS       DATCGC010000857         2965 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_45479, whole genome shotgun sequence.
ACCESSION   DATCGC010000857 DATCGC010000000
VERSION     DATCGC010000857.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2965)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2965)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2965
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45479"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1034
                     /gene="queA"
                     /locus_tag="VIJ87_08250"
     CDS             <1..1034
                     /gene="queA"
                     /locus_tag="VIJ87_08250"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: protein motif:HMM:TIGR00113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HEY5444442.1"
                     /translation="LISDFDYDLPEELIAQQPLAERDASRMLLVDRQTQSWRDLSFRE
                     FQSELKPNDVVVVNNSRVIPARLLGRRKESGGRVEIFLVRELEPLMWEALVRPGARLR
                     LSSRVVFGNGELEAELLDEPGSELRRVRFESNGSFDSVLSQVGSTPLPPYIKRPEGAL
                     RADDERYQTVYSKPRGAIAAPTAGLHFSPALLAKLHEQNQLVEITLHVGYGTFEPVRV
                     DEVSEHEVSSERFEIQDEAAHRINLARAKGGSVIAVGTTTTRALESASTENGEIAAGQ
                     SEARLTIKPGYRFRIVDALLTNFHLPRSSLLILVSTFAGRELILQAYKHAVEQHYRFY
                     SYGDCMLIR"
     gene            1095..1646
                     /locus_tag="VIJ87_08255"
     CDS             1095..1646
                     /locus_tag="VIJ87_08255"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HEY5444443.1"
                     /translation="MAVLKKFRSRWWSQSDVPYDSEKNEKAVTPSWGMRYDIRPLTIS
                     QLDECWRLDQRCFIDGEAYSRETFDYLLTAPEAVSFRAVTSGGVMVGFVIGLVEPDHT
                     GHVTTVGVSPEHRRRNLAKRLMGQVEEGFRKRHVRLVRLEVRYLNTPAQKLYESLGYS
                     ITQRLPKYYSNGGDGLLMLKSLD"
     gene            complement(1643..2227)
                     /locus_tag="VIJ87_08260"
     CDS             complement(1643..2227)
                     /locus_tag="VIJ87_08260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015347803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase domain-containing protein"
                     /protein_id="HEY5444444.1"
                     /translation="MTFINYASREINCKIVYYGPGLCGKTTNLQYIFDSTAPQARGKL
                     ISLATETDRTLFFDFMPLELGTVRGFKTRFHLYTVPGQVFYDASRKLILKGVDGVVFV
                     ADSQEERMDANIESLYNLEENLKSQGYDLMKIPYVLQLNKRDLGNVVPVEDLAAELQR
                     KGEPVVEAVAATGAGVFDTLKAVAKQVLTELRKG"
     gene            complement(2239..2709)
                     /locus_tag="VIJ87_08265"
     CDS             complement(2239..2709)
                     /locus_tag="VIJ87_08265"
                     /inference="COORDINATES: protein motif:HMM:NF015232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="roadblock/LC7 domain-containing protein"
                     /protein_id="HEY5444445.1"
                     /translation="MADTPILLREQQYHQIKAVLARLRMDSAAKVVFLVDKDGQEIAS
                     LGEVGNLDTTSLASLTAGNVAATGGMAQLIGEKEFPTLSHEGEKESIHISVIGRLLLV
                     VMFDERSSLGLVKLRSKQVSQQLASMFDEVASNDYDDDSPFAGITDEDIDSLFS"
BASE COUNT          722 a          737 c          767 g          739 t
ORIGIN      
        1 tgctcatctc ggattttgat tacgaccttc ccgaagaatt gatcgcgcag caaccgttgg
       61 ctgaacgcga cgcctcgcga atgttactcg tcgatcgtca gactcaatcc tggcgagatt
      121 tatccttccg agagtttcaa agcgaactaa agcctaacga cgttgttgtc gtaaataatt
      181 cacgagtaat acctgctcga ctgcttggtc gccgtaaaga gtcaggcggg cgagttgaga
      241 tttttctggt tcgagagttg gaacctttaa tgtgggaagc gttggttcgc cctggtgcgc
      301 gcctgcggct cagttcgcgg gtcgtttttg gaaacggcga gcttgaggca gaacttctgg
      361 acgaaccagg gtcagagctg aggcgagtac gctttgaaag taacggctca tttgactccg
      421 tgctttcgca ggtaggctca accccacttc ctccctacat caagcggccc gagggggcct
      481 tacgcgccga tgacgaacgc taccaaacgg tctactcaaa accgcgcgga gcgatcgctg
      541 ctccgacagc agggctccac tttagccctg cgctgttagc caagctgcat gagcaaaacc
      601 aactagtaga aatcacacta catgttggtt atggaacatt cgaaccagtt agagtcgatg
      661 aagtgagcga gcatgaagtc tcgagtgaac ggtttgagat tcaagatgag gctgctcaca
      721 gaatcaattt agcgcgggcg aaaggaggga gtgtcatagc cgttggcact acgacaaccc
      781 gggcactaga gtcagcgtct acagagaacg gcgaaattgc cgcgggtcaa agtgaagcaa
      841 ggttgaccat caaacccggt tatcggtttc gcatagttga tgctctgctg accaatttcc
      901 atttgcctcg gtcgtcattg cttattctgg taagcacttt cgctggacga gagttgatct
      961 tgcaagctta taaacacgct gtcgaacagc attatcgttt ttacagttac ggggattgca
     1021 tgttaatccg gtaggcggta taaaaaacca agtggtaaac tgaacttagc tggttcactt
     1081 ctaccaacaa tgctatggca gtactaaaga aatttcgttc ccgctggtgg tcacaatccg
     1141 acgttcccta cgattcggag aagaacgaga aggcggtcac tccctcttgg ggaatgcgct
     1201 acgacatccg tccgttgacc atttctcagc tggacgaatg ctggcggctc gaccaacgtt
     1261 gctttatcga cggcgaagcc tatagccgcg aaaccttcga ctatctactg accgctcctg
     1321 aggcagtttc attccgggca gttacgtccg gaggagtcat ggtcggattt gttattggcc
     1381 tggttgaacc tgatcacacc ggacacgtaa ctacggtcgg tgtctctcca gagcaccgtc
     1441 gtcgtaatct cgcaaaaaga ctaatgggcc aggttgaaga aggatttcga aaaagacatg
     1501 ttcggctggt gcgactcgaa gtgagatatc tcaacactcc cgcacaaaaa ctctacgaga
     1561 gtctcggcta ttcaatcact caacgcttac cgaaatatta ttccaacggc ggggacggac
     1621 tcttgatgtt gaagtcgctc gactagcctt tgcgcagttc cgtcagaacc tgcttagcta
     1681 ccgctttcaa agtgtcaaaa acgcccgctc cggttgcagc cacagcctca actacgggct
     1741 cacctttgcg ttgtaattca gcagctagat cttctaccgg cacaacgttg ccaaggtcgc
     1801 gtttattgag ttgaaggaca taggggatct tcattagatc atacccttgg gacttcaagt
     1861 tctcttccag gttgtagagc gattcgatat tggcgtccat acgctcttct tgcgagtcag
     1921 ctacgaatac gacaccgtcg acacccttaa ggatgagttt gcgcgaagca tcgtagaaga
     1981 cctgacccgg aacggtgtag aggtgaaaac gagtcttgaa cccgcgaacc gttcccagtt
     2041 caagaggcat aaaatcaaaa aacagtgtgc gatcggtttc ggtggctaaa ctgatcagct
     2101 tgccgcgggc ctgaggagcc gttgagtcaa aaatgtactg cagatttgtg gtctttccac
     2161 acaggccggg accgtagtag acaatcttgc agttaatctc tctggaagcg tagttgataa
     2221 aagtcatatc gggtgccgtt agctaaaaag gctgtcaata tcttcgtccg tgattccggc
     2281 gaatggagag tcatcgtcgt agtcgttgct ggcaacctca tcaaacatcg aggccagctg
     2341 ttgcgagact tgcttactgc gaagcttgac cagtcccagg cttgatcgtt cgtcaaacat
     2401 gacaactaga agaagtcggc caatcaccga gatgtgaatg ctctcttttt cgccctcgtg
     2461 ggaaagagtc ggaaactctt tttcgccgat cagttgcgcc atgccacccg tggctgcaac
     2521 gtttccggcg gttagcgagg cgagactggt tgtgtcaaga tttcccactt caccgagtga
     2581 agcgatttcc tgaccatctt tatcgaccag aaagaccacc ttggctgcgc tgtccatccg
     2641 taatctggct aggactgctt ttatctggtg gtattgctgc tcacgcaaca ggattggggt
     2701 gtctgccatt gttacgactc tttgttgaag gccggggcgg gaagtcttaa tcggagagtg
     2761 aacccgaaac gcagcttcgt gggtcgcaag ttttgaatct acaagaggtt acttctacgg
     2821 ttggggccgt ttggcggaga tatctaatac ctctccaaac caagacgcac tgtaacatag
     2881 caaacaatga ccatcaagtg tttttctatg tttacacttt tattgttcat ttgaacgtga
     2941 gcgaagctgc ttaaagcgcc cgcaa
//
LOCUS       DATCGC010000858         1274 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_377999, whole genome shotgun sequence.
ACCESSION   DATCGC010000858 DATCGC010000000
VERSION     DATCGC010000858.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1274)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1274)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1274
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_377999"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..232
                     /locus_tag="VIJ87_08270"
     CDS             <1..232
                     /locus_tag="VIJ87_08270"
                     /inference="COORDINATES: protein motif:HMM:NF015510.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="outer-membrane lipoprotein carrier protein LolA"
                     /protein_id="HEY5444446.1"
                     /translation="NIVLRGVPTAMNDRVEEILLEITPQNQIVRISVNEADGSSTEYR
                     FQNLRENDEIADAPFRFLPPPGAEVIQGDLGP"
     gene            431..>1274
                     /locus_tag="VIJ87_08275"
     CDS             431..>1274
                     /locus_tag="VIJ87_08275"
                     /inference="COORDINATES: protein motif:HMM:NF012694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEY5444447.1"
                     /translation="MAEFLVKVADEQGHLVQQVEHGYSEADVRERFTQQGYLVYWVKP
                     QGIFSGGRVGLSRGKLKQNPFVIFNQQFLTLIKAGLPILTALELLIKRQKDSTLRPLL
                     ENVRDRVKSGELLSDSFAAQGVFPKMYTTTLMAGEKSGNMEEVLNRYISFQRLSMTFR
                     KKLFVSLVYPTLLIVVVTIMVLFLVTYVVPEFAKLFNNLGATLPTPTVIMLALGTQAR
                     KLLPFLALGFVALVIFIWRWRTTDRGAEQIDRILLKIPLLGDIRLKYQVATFSRMLST
                     LLLGG"
BASE COUNT          300 a          297 c          369 g          308 t
ORIGIN      
        1 aaatattgtg ctgcgcggcg tcccaaccgc gatgaatgac cgtgttgagg agatacttct
       61 cgagatcacc ccgcaaaatc agatcgttcg catctcagta aatgaagcgg atggctcttc
      121 gacggagtat cgcttccaaa atttgaggga aaacgacgag atcgccgatg ctccattccg
      181 atttcttccg ccgccggggg cggaagtcat tcagggggac ttggggcctt agggaagcag
      241 gacagaatgt ggttgattcg gaagaattta ggaaccggct tgtaacgatt cgggccgcca
      301 gatcacatta ctagggttat ggcaaatcct ttgtgagcag tacattacaa gtaatcttac
      361 cggttacatg agtgataaac tgggcgagac agggcttctt gagattgata cgggctcggg
      421 ataggcaaaa gtggcagagt tcctcgtaaa agtggcggac gagcaagggc atctggtgca
      481 gcaggtcgag cacggatatt cggaagccga cgttcgcgaa agattcaccc agcaaggtta
      541 tctcgtctac tgggtgaaac cgcagggaat tttcagcggc ggcagggtag gcctttcgag
      601 gggcaaactt aaacagaatc catttgtgat cttcaatcag cagtttctga cgctgatcaa
      661 agctggtctc ccgatcctga cggcgcttga gctgcttatc aagcggcaaa aggactccac
      721 cctgcggccg ctgcttgaaa atgttcgcga ccgagtaaag agcggagagc tgttatcgga
      781 ctcatttgcg gcacaaggcg tctttccgaa gatgtacacg actacgctca tggcgggcga
      841 gaagagcggc aacatggaag aggtgctgaa tcgctacatt tcgttccagc gactcagcat
      901 gacgttccgg aagaagctct ttgtgtcact cgtgtatccg acacttctga tcgtggttgt
      961 aacgatcatg gtgctgttcc tggtcacgta tgtggtccct gagtttgcga agctattcaa
     1021 caatctcggc gcaacgctgc caacaccaac tgtgatcatg ctcgccctgg gtacgcaggc
     1081 acgaaagctt ctgccattcc ttgcgctggg gtttgttgcg ctagtgattt tcatctggcg
     1141 atggagaact actgatcggg gcgcggaaca gatcgatcgg attcttctaa agattccgtt
     1201 gttgggtgat atccggttga agtatcaggt cgcaacgttt tcgaggatgt tgtctacttt
     1261 gctgctgggc ggca
//
LOCUS       DATCGC010000859         2190 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_45562, whole genome shotgun sequence.
ACCESSION   DATCGC010000859 DATCGC010000000
VERSION     DATCGC010000859.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2190)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2190)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2190
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45562"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..452)
                     /locus_tag="VIJ87_08280"
     CDS             complement(<1..452)
                     /locus_tag="VIJ87_08280"
                     /inference="COORDINATES: protein motif:HMM:NF017181.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444448.1"
                     /translation="MIKTFFRRIATISTVASFCLSSAISSSAQSPTPDQAALMSWLSL
                     DAPPGWEQLATNVLLKQLPGWKRDPLGNLILRKGTGSPRRVVACGIDRPSFAVSEITD
                     DGYLRLRESGSIRPHPLWIQFHEGQRIRVLTRKGSTSGVVTVKSTHLQR"
     gene            complement(528..1841)
                     /locus_tag="VIJ87_08285"
     CDS             complement(528..1841)
                     /locus_tag="VIJ87_08285"
                     /inference="COORDINATES: protein motif:HMM:NF015140.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4214 domain-containing protein"
                     /protein_id="HEY5444449.1"
                     /translation="MYKAIRSRLSLNIFLSIFVAVTFVSQASAQQSSGDVPGTNGVSP
                     SGGVISFLSSTLVTQENRGSAVITVQRTGDTSQAVTVHYETADHSESIDVFPCSAVNG
                     LASSRCDYTTAIGTLRFASGENSKTLKVLISEDSYVEGLEGVQVILSNPTNGAVLGTP
                     STATLEISDDPIEPNTNLINDPNTFVTHHYHDFLNREPDAAGLQFWTNEIFLCGGNTQ
                     CQDAKRVNVSAAFFLSIEFQETGVLVYRTYKASFGNLPNAPVPVRFVEYLPDAQQVSF
                     NVQVGVGNWQAQLEANKVAYFADFVTRPRFTDAYPNLLSPTQFVDILFLNTAVTPTRE
                     EREAAIDEFAGAGNTTNVGARARALRRVVENEAFKKREFNPAFVLMQYFGYMRRNPNA
                     TPDTNYNGFQFWLNKLAQFNGDFQSADMVKAFIISGEYRARYGPQ"
BASE COUNT          553 a          524 c          575 g          538 t
ORIGIN      
        1 cgttgcaggt gtgtgctttt taccgttact actccggaag tgctgccttt gcgagtgagg
       61 acccgaatac gctggccctc gtgaaactga atccacaacg gatgcggtct gatgctgccg
      121 gactcacgaa ggcgcaggta gccgtcgtca gtaatttcgc ttaccgcaaa agacggacgg
      181 tcaataccac acgcaacaac acgtcgagga ctgccagttc cttttctcaa tatgagattg
      241 cctagcggat cacgtttcca cccgggcaat tgcttcaaca aaacattggt tgccagctgt
      301 tcccaacccg gcggagcgtc aagggaaagc caactcatta gtgcggcttg gtcaggagtc
      361 gggctttggg cgcttgaact gatcgccgaa gaaagacaaa aagaggcgac cgtcgaaatc
      421 gttgcgatac gacgaaagaa agttttgatc atgatgggga gttttagagg ttgtgggtgg
      481 cacagacttc agtcggtgat tccgctgagt ttctgccacc agttatttta ttgtgggccg
      541 tagcgcgcgc gatattcgcc ggaaatgata aacgctttga ccatgtctgc gctttggaag
      601 tcgccgttaa attgagccag tttgttgagc cagaactgaa aaccgttata gttcgtgtct
      661 ggagtagcgt tcggattacg tctcatataa ccgaagtact gcatcaacac aaatgccgga
      721 ttgaactctc gctttttgaa agcttcattt tcgaccactc gtcgcaatgc gcgagcgcgc
      781 gcgccgacat tagtcgtatt gccagcgccc gcaaactcat cgatcgccgc ctcccgctct
      841 tcgcgtgttg gcgtgacggc tgtgtttaga aacaaaatgt cgacaaactg tgttggtgac
      901 agcaggtttg ggtaagcatc cgtgaatcgt ggtctcgtca cgaagtcagc aaagtatgcg
      961 accttgtttg cttccagttg ggcctgccag ttgccgacgc cgacttgaac attgaatgag
     1021 acctgttgag catcgggcaa gtactctacg aaacgaaccg gtaccggcgc atttggcaaa
     1081 ttcccgaaag atgctttgta agttctgtaa accaaaactc ccgtctcctg gaactcaatc
     1141 gagagaaaga aggcagccga tacgttcact cgcttagcat cctgacactg cgtatttccg
     1201 ccacacaaaa agatttcgtt tgtccaaaac tgaagaccag cagcgtctgg ctctcgattg
     1261 agaaagtcgt gatagtgatg ggtgacaaag gtgttcggat cgttgatcag attcgtgttt
     1321 ggttcgatcg gatcgtccga aatctccagg gttgcagttg aaggtgttcc tagcactgcg
     1381 ccattggtcg ggttagaaag tattacttga acgccttcga gtccttcgac ataagaatcc
     1441 tcactgatca ggactttcaa cgttttcgag ttttctccag aggcaaagcg aagagttcca
     1501 atcgcagtag tgtaatcaca tcgtgacgac gccaggccgt taaccgcgga gcagggaaaa
     1561 acgtcgattg attcgctatg gtcagctgtt tcatagtgaa cagtaaccgc ttgagacgta
     1621 tcgcccgtcc gctggacagt gatgactgcg gagcccctgt tttcttgagt gacgagggtt
     1681 gacgaaagga agctgattac tccgcccgac ggacttacgc cgttggtacc tggcacgtct
     1741 ccggacgact gttgggcaga agcttgagaa acaaaagtaa cagcgacgaa tatcgagaga
     1801 aagatgttaa gactcaatct tgaacgaatt gctttgtaca taagtactcc gatctttagt
     1861 cgggtcttaa caataattgc ctggcgtcct gggttagact tcaaagcaat tgtaatgggg
     1921 agaagtatgc aagagtgcgc agcacggtgc acactcaacg aatcggtagc gttcccacac
     1981 gtttaccgct caagaattca tcaagtctca aactatcttt taggggattt tgcgacagcc
     2041 cgttgcggga gtgggctgtc gctaataaag ggggactaac aaactgctag gacaaatccg
     2101 taatgattta ttctacaacc gcaggcaatg aatgaatcaa gcggcgcatg cgatctgcaa
     2161 acagcacgtc aatcttgcat ggctcgatca
//
LOCUS       DATCGC010000860         1226 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_245518, whole genome shotgun sequence.
ACCESSION   DATCGC010000860 DATCGC010000000
VERSION     DATCGC010000860.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1226)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1226)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1226
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245518"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..134)
                     /gene="tsf"
                     /locus_tag="VIJ87_08290"
     CDS             complement(<1..134)
                     /gene="tsf"
                     /locus_tag="VIJ87_08290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011555308.1"
                     /note="EF-Ts; functions during elongation stage of protein
                     translation; forms a dimer; associates with EF-Tu-GDP
                     complex and promotes exchange of GDP to GTP resulting in
                     regeneration of the active form of EF-Tu; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HEY5444450.1"
                     /translation="MAGSSQLVKELRERTGAGILDCQKALTENNDDIEKAVDFLRQKG
                     "
     gene            complement(192..965)
                     /gene="rpsB"
                     /locus_tag="VIJ87_08295"
     CDS             complement(192..965)
                     /gene="rpsB"
                     /locus_tag="VIJ87_08295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HEY5444451.1"
                     /translation="MGVVSIKELLEAGVHFGHQTNRWNPKMKKFLFGERNGIYIIDLQ
                     QTLARMEQAYAFVRDTVASGQSVLFVGTKRQAAEILQEEALRANMFFVNQRWLGGMLT
                     NFQTIRKSIDKMKKLEAKLADPSHYGLKKKEVLKMQKEIVKLQKYLSGIKDMRGVPGA
                     VFVLDTRIEHIAVQEAGRLEIPVIAILDSNCEPDHITYPIPGNDDAIRSIKLITSRIA
                     DACIEGAHLRAQREEAEFKPVPAAVDKAAPVSFASAPAS"
BASE COUNT          249 a          331 c          314 g          332 t
ORIGIN      
        1 aagccttttt ggcgcagaaa atcgacggct ttctcaatat cgtcgttgtt ctcagtgagc
       61 gccttctggc aatcgagaat gccggcgccc gttctttctc ttaattcttt gaccagctga
      121 cttgatccag ccatacgtga cagtccttct cggtaaacag tgaaagtaac cgttgataca
      181 tgtgtccggc gttatgaagc cggtgcgctc gcgaagctga cgggtgcggc cttgtctacc
      241 gctgcaggaa caggtttgaa ctccgcttct tcacgttgcg cccgcaagtg ggcgccttca
      301 atgcatgcgt cagcaatgcg cgatgtgatg agcttgatgg aacggatggc gtcgtcgttt
      361 ccagggattg ggtaggtgat gtgatccggt tcgcaatttg agtcaaggat tgcgatcacg
      421 gggatctcca gccgacccgc ttcctgtacg gcgatatgct ctatgcgtgt gtcgagtacg
      481 aatacggctc ccggcacacc tctcatatcc ttgatgccgc tgagatactt ttgaagcttt
      541 acgatttcct tctgcatctt caagacttct tttttcttca gcccgtagtg actgggatcc
      601 gccagcttgg cctccagctt cttcatttta tcgatacttt tccggatggt ctgaaagttc
      661 gtcagcatcc cgccgagcca gcgttggttg acgaagaaca tattggcgcg caaagcttct
      721 tcctgaagga tttcagcagc ctgccgtttt gtgccgacaa acaggaccga ttgacctgaa
      781 gccacggtgt cacggacgaa ggcataggct tgctccatgc gagccagtgt ttgttgaaga
      841 tcgatgatat agataccgtt gcgctctcca aagaggaact ttttcatctt cgggttccat
      901 cggttcgttt gatgtccaaa atggacaccg gcttccaaca attccttgat cgaaaccact
      961 cccatgcctt cacctcctct caagacttgc agagcgcctg ttgtcacagg cgaggggtcg
     1021 cccccttatt ctcaagtcga gcgacgtccg tgacgtcgat atgaatttta tgctgttcct
     1081 ccccgcacga aattgtacga ggagaaggcc atctcccgag cgctataacc gtggcacgct
     1141 agcatggtca cggtcagttt ggcaaggcca ggccatctct ttcgtggcaa agcagcctat
     1201 ctccattgtc gatgatgctg gtttcg
//
LOCUS       DATCGC010000861         1049 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_179598, whole genome shotgun sequence.
ACCESSION   DATCGC010000861 DATCGC010000000
VERSION     DATCGC010000861.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1049)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1049)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1049
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179598"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(34..>1049)
                     /locus_tag="VIJ87_08300"
     CDS             complement(34..>1049)
                     /locus_tag="VIJ87_08300"
                     /inference="COORDINATES: protein motif:HMM:NF024627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
                     /protein_id="HEY5444452.1"
                     /translation="SILHGGHFAILATGVDNLTIDNLKIDTNRDGIDVDACKNVRISN
                     CTVNSPFDDGICPKSSFALGYARVTENLTITNCQVSGYDEGTLLDGTYKRDFRNANGT
                     FSPTGRIKFGTESNGGFKNITVSNCVFDYCRGLALEAVDGALLEDVTISNITMRDISN
                     APIFIRLGNRARGPKETTTVGAIRRVNISDIVVYNADPKYSSIISGIPGHPIEDLRLS
                     NIRVYSKGAGTKEQAALDPPEKEDTYPEPTMFGELPSYGFFIRHVKALQMRDVEVSYL
                     KEDMRPAFWLNDVAGIDLLHVKAQHASGVPTYALKNVTDFSTHQCWPLADMRLEKVDA
                     KSY"
BASE COUNT          243 a          258 c          272 g          276 t
ORIGIN      
        1 aagcggtgcc gggccaccgc actccaaaga ggatcagtaa ctcttcgcgt cgactttctc
       61 gagtcgcata tctgctagtg gccaacattg atgagtgctg aagtctgtaa cattcttcaa
      121 ggcgtaggtt ggaacgccgg acgcgtgttg cgccttaacg tgtaggagat caattccggc
      181 aacgtcgttt agccagaacg ctggtctcat gtcttccttc aaataactaa cctcaacgtc
      241 gcgcatctgg agcgctttca cgtgtctgat gaagaagcca tatgaaggaa gttcgccaaa
      301 catggttggt tccgggtacg tgtcttcctt ttcaggtgga tcgagtgcag cttgttcttt
      361 ggttcccgcg ccctttgagt aaacgcgaat gttactcaaa cgtaagtcct caattggatg
      421 accggggatg ccgctaatga tcgaagagta tttcgggtca gcgttgtaga caacgatgtc
      481 gctgatgttc actcgacgaa tcgctcccac ggtcgtcgtt tcttttggtc cgcgtgctcg
      541 atttcccagt cttatgaaga tcggtgcgtt gctgatgtca cgcatggtga tgttggaaat
      601 ggtcacgtct tccagtaagg caccgtcaac cgcttcgagc gcgaggcctc tgcaatagtc
      661 gaacacgcag tttgaaacag taatattttt gaagccgcca tttgactccg tgccaaactt
      721 gattcgacct gtcggactaa aagtgccgtt cgcatttcga aagtcgcgct tgtatgtacc
      781 gtccaagagc gttccttcgt cgtaaccact aacctgacaa ttcgtgatag tcaggttctc
      841 ggtgacgcga gcgtagccaa gagcaaacga actcttcgga caaatgccgt cgtcgaatgg
      901 agaattgacc gtgcaatttg aaatgcggac gttcttgcaa gcgtcgacgt cgatcccatc
      961 gcgattcgta tcaatcttca agttgtctat ggtgaggtta tcaactccgg tggcgagaat
     1021 agcgaagtgt ccaccatgaa gaatcgaaa
//
LOCUS       DATCGC010000862         1023 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_145768, whole genome shotgun sequence.
ACCESSION   DATCGC010000862 DATCGC010000000
VERSION     DATCGC010000862.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1023
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145768"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..694)
                     /locus_tag="VIJ87_08305"
     CDS             complement(<1..694)
                     /locus_tag="VIJ87_08305"
                     /inference="COORDINATES: protein motif:HMM:NF021391.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2092 domain-containing protein"
                     /protein_id="HEY5444453.1"
                     /translation="MKKTGFKSLKMGVRCISVAVLPLIVLLGALAEVKADEADAKRMV
                     KAMSDYMAGQKAISFGYDSILEVVTKDHQTLALASSGTVLLRRPDKIRATRSGGFADV
                     EMLFDGKTLTMLGKNANLYAQADIPGSIDHLIDELKNKYDRPLPAADLLMTDIEGQLM
                     PDVTDIKDLGSGVIGGMECDHFAFRTKEVDWQIWIAQGDRPYPCRYVIKSVKIADGPE
                     YSIQLRDFKTGDN"
BASE COUNT          227 a          297 c          248 g          251 t
ORIGIN      
        1 cgttatctcc ggtcttaaag tccctgagct gaatgctgta ttccggtcca tcagcaatct
       61 tcactgattt gatgacatat cggcaagggt agggacggtc tccctgggcg atccagattt
      121 gccagtcgac ttccttggtc cgaaacgcaa aatgatcgca ctccatgccg ccaataacac
      181 cactgccaag gtccttgatg tcagtcacat caggcatcaa ctgaccttcg atatcagtca
      241 tcaacaaatc ggcggccggc aggggacggt cgtatttgtt cttcaactcg tcgattagat
      301 gatcgattga tccagggatg tcggcctggg cgtagaggtt ggcgttcttg ccgagcattg
      361 tcagcgtctt gccgtcaaaa agcatctcga catcggcgaa accgccgcta cgtgtcgctc
      421 ggatcttgtc gggccgtcgc agaagaacag tacccgaact cgccaacgcg agtgtctgat
      481 gatcttttgt gaccacttca aggatggaat cgtatccaaa cgaaatggct ttctgtcctg
      541 ccatgtaatc ggacatggcc ttgaccatcc gcttggcatc ggcctcatcg gctttcacct
      601 cggccaacgc ccccagtaga actatcagag gtagcaccgc aacggaaatg catcgcaccc
      661 ccatctttaa tgacttgaaa cccgtctttt tcactttgtt tttccttcct ttcttgctcg
      721 tgatccctac acataacagt gctcctgaca gctgcctata ggaccttggt cccacaccaa
      781 aggtgtgagg cgaagcactt tccgccattc ctgttgcgcc ttacgagagg ctgaaaagca
      841 ttcggacaaa tttggagacc cgaacaggcg caaaacgatc tgcagagcct acttctttac
      901 cgtagtccgc cgagacagga gacgagaagt caagccgctc catctgggct gtctctcatg
      961 ttgtctccgg gctcgcatgt agtttcgaag gacaatcgtc cccgcgccga gcggcgcttt
     1021 gcc
//
LOCUS       DATCGC010000863         2705 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_45594, whole genome shotgun sequence.
ACCESSION   DATCGC010000863 DATCGC010000000
VERSION     DATCGC010000863.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2705)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2705)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2705
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45594"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            272..880
                     /locus_tag="VIJ87_08310"
     CDS             272..880
                     /locus_tag="VIJ87_08310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444454.1"
                     /translation="MKPLLAISCFVLIVLSTAFVVHADIPKPKASQKSENTTIFSSLE
                     IVPDPKANNAKLQIHQSDLKALRAALDGQSTNTTLATSISHSGPRTIVAGVLLFLSLS
                     FGGVWLARTSRSGATLNRGQKTVAVLLVTAATLGAAAIITRGNAGPPPAYRWKNLPTA
                     LAAGESTAGPVMIEVIPDDPNTGTGMVLTIPLKKKNAQGDDE"
     gene            883..1935
                     /locus_tag="VIJ87_08315"
     CDS             883..1935
                     /locus_tag="VIJ87_08315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444455.1"
                     /translation="MQDALELKRTTWRSTLEAGTTTRLRVFAATLVLCVLASAAFASW
                     IPLPVSIITVFLFAGPHNWFELRYFLMRLPVRFGRSRNFFITAFFGIAVLTCTYFSLP
                     LIYRLSPNSNEWWLTVIAVWNTLFLGWLAVLVWLRAKQKPRSNWTWFLPLTFALCAFN
                     WFSPDFFSLALVYVHPLVALWFLDRHLKRTRPTWVRTYRRCLALLPVVLGLMVWQLQQ
                     TTSLPESNGLFWRITQHSGAELLPNVSSHLLVSVHLFLEMLHYGVWLLALPLLGSVVT
                     RSSSGKVWDWKSVPLARHPKGFPKLVAFALGFGVIMVALLWVGFSIDYSTTRDIYFTL
                     AIAHVLAEAPFLLKMI"
     gene            1963..2373
                     /locus_tag="VIJ87_08320"
     CDS             1963..2373
                     /locus_tag="VIJ87_08320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444456.1"
                     /translation="MRLNDEMTPSELWRFFPIGYLLTIAIETPILVIGLSERHSTRRR
                     LLAGVWLTACTYPIVTLVLPLVLVNHSRGLFLLVAEVFAPVAECVLFWLAFGSKEELG
                     TTRMWRDFLAIVVANLASFGVGEILNAWHWFGLV"
BASE COUNT          589 a          724 c          683 g          709 t
ORIGIN      
        1 ttggacgtct cgcaactgtg atcctgagcg tgcccccgct gagattaacc tgcaccaact
       61 aaggttttca tatggcgact cagcgggggc acgctcagaa tcacaaccac gacacgccca
      121 attctccgct gcccccttcc cagcttgttc aattcacaga gatgtctctt actgaaaacc
      181 aaatccgaaa tcatcttcct gttttctgtt gccgtcgctc ttatcgcggt ataagctgcg
      241 ggcgcttttc gattgaaagg agctaaccca aatgaaaccc cttctagcta tctcttgttt
      301 cgtcctgatt gttctgtcaa ccgccttcgt agtgcatgca gacatcccga aaccgaaggc
      361 gagtcagaag tctgaaaaca ctacgatctt tagtagcctc gagattgttc ccgacccgaa
      421 ggcgaacaac gccaaattgc agattcatca gtcggacttg aaagcgttgc gcgcagccct
      481 cgacggtcaa tcgactaaca cgactctagc cacaagcatc tcgcacagtg gccccaggac
      541 aatcgtggct ggagtcttgc tcttcctatc tctgtcattc ggcggcgtct ggttggctcg
      601 tacttccaga tctggcgcga ctctcaatcg aggtcaaaag actgtggcag tgttgctcgt
      661 cacggcggca acccttggcg cagcggcaat catcacgcgc ggtaatgcag gtccgcctcc
      721 ggcctatcgt tggaaaaatc tgcccacggc cctggcagca ggtgagtcga ccgctgggcc
      781 agtcatgatc gaagtgatcc ccgacgatcc gaatacggga acaggaatgg tgcttactat
      841 cccgcttaag aagaagaacg cacagggcga cgacgagtaa cagtgcaaga cgctttagaa
      901 ctaaaacgaa caacgtggcg ttcgacgttg gaagctggca caacgacccg gttacgtgtt
      961 tttgccgcga cgctggtttt gtgcgtgctt gcttccgccg cgtttgccag ttggattccc
     1021 ttaccagttt cgatcatcac cgtcttcttg tttgcgggtc ctcacaattg gtttgagctt
     1081 cgctatttcc tgatgcggct gccagtgcgg tttggaagat cgcggaactt cttcatcaca
     1141 gccttcttcg gaatcgcagt tttaacgtgc acttactttt cacttccctt gatttatcgg
     1201 ttaagcccga attcgaacga gtggtggtta acggtaatcg ccgtgtggaa cacactgttt
     1261 ctcggctggc tggcagtcct tgtgtggtta cgcgccaagc aaaagccgcg aagcaattgg
     1321 acatggtttc tgcctctaac gttcgccttg tgcgccttca actggttcag tcccgatttc
     1381 ttcagcctgg ccctggtgta cgttcatcca ctcgttgcgc tgtggttcct ggacagacac
     1441 ctcaaacgaa cccggccaac ctgggtgcga acatatcgac gttgcctggc cctattgcca
     1501 gtggtgctgg ggttaatggt ctggcaacta cagcaaacta cttcgctccc tgaaagcaat
     1561 ggactgttct ggcgtattac ccaacactct ggcgcggagc ttttgcccaa cgtgtcgagc
     1621 cacttactcg tctcggtcca cctgtttctc gaaatgttgc attacggagt ttggttgtta
     1681 gcgttgccgt tgctgggttc agtggtcacc aggagttcat cagggaaggt ttgggactgg
     1741 aagtcagtgc cgctcgctcg acacccgaaa ggatttccaa agctcgtcgc cttcgcactt
     1801 ggttttggtg tcatcatggt tgctctgtta tgggttggct tctcaataga ctactccacg
     1861 acaagagata tttacttcac gttggctatt gcgcatgtgt tggcagaggc accgttccta
     1921 ttaaaaatga tttgaacgga cgaggccgcg ccaggaagaa gcgtgcgtct gaacgatgaa
     1981 atgacacctt ccgaactctg gcgcttcttt ccaattgggt atctgctaac aatcgctatt
     2041 gagacgccga tacttgtcat tggcttgtct gagcgacata gcacgcgacg aagattgctc
     2101 gctggagttt ggttaactgc ctgcacctat ccaatcgtca ctcttgtctt accactagtg
     2161 ttggtcaacc actcgcgcgg attgtttcta cttgtggccg aagtcttcgc tccagttgca
     2221 gagtgtgtgt tgttttggtt ggcgtttgga tcgaaggaag aacttgggac aacccggatg
     2281 tggcgagact ttctggcgat cgtcgtcgca aacctcgcat cgtttggtgt tggtgagatt
     2341 ctaaatgcct ggcactggtt tgggttggtt taagagttgg gccgcagatg cacacagatg
     2401 aacgcggatc aggatcaaag aagaatgtct ttagagtctt taaattttga ctgaaggaac
     2461 ctctgattaa atgcaagggc cctacatgtt caaaagctct tatctgtgat catccgtcta
     2521 atctgtggca cttcagtttt cagcgataag actcgcgagc accgatgtgt cgatgttacc
     2581 gcccgacaag atcacaccaa tcttcttcac atccgccggc aacttctgaa acatcacggc
     2641 agcggcagcc gcaacacccg acggctcgac caatagcttc atccgaaaca acatgaactt
     2701 aatag
//
LOCUS       DATCGC010000864         2487 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_81417, whole genome shotgun sequence.
ACCESSION   DATCGC010000864 DATCGC010000000
VERSION     DATCGC010000864.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2487)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2487)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2487
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_81417"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..188
                     /locus_tag="VIJ87_08325"
     CDS             <1..188
                     /locus_tag="VIJ87_08325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444457.1"
                     /translation="QQSSSRIDERMKTGPIGEKCQCGADNWCITATMIECLACFRLWG
                     RVNGLWVEVIEPQKTGG"
     gene            188..481
                     /locus_tag="VIJ87_08330"
     CDS             188..481
                     /locus_tag="VIJ87_08330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444458.1"
                     /translation="MLQGDLTLEDMKRISGDVCSYLTKLQMSPEIICKEVVSDEKHYW
                     AELKRDVLAEIVEKATQLYLAHGGSTISNITKHFRENGNPRCFCGCPNSVKQQ"
     gene            507..1277
                     /locus_tag="VIJ87_08335"
     CDS             507..1277
                     /locus_tag="VIJ87_08335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444459.1"
                     /translation="MKATTSLYGNCVVLTGDTVMFRCDQERMNWYLSMGLADIVTKEP
                     PVIRLNFKPKGPGHHGDPYFLQEFKNRCVVCGITDNLSHHHIVPYCYRRYFPKDSYEN
                     GRWFYDVLLLCLGCHDSYEERAQELKQSIAHEHGVPPWGTTTLNDDEAQIMKAAITLH
                     RHRDKLPFDRRDRFEKIVKTYLGKEELLPEDPENVFDIIKDGIVTTSAAEIIVSKLRD
                     LDDFAIRWRRHFLRHMKPRFLPDLWVAERRIYTEPNKR"
     gene            1274..1477
                     /locus_tag="VIJ87_08340"
     CDS             1274..1477
                     /locus_tag="VIJ87_08340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444460.1"
                     /translation="MNLEDLQAKLHQMGSAEASALGQALETIWWDESDDVKAQELAIA
                     YMREIQGWAKRVEEVLTGVRKEL"
     gene            1480..1719
                     /locus_tag="VIJ87_08345"
     CDS             1480..1719
                     /locus_tag="VIJ87_08345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444461.1"
                     /translation="MTRAKYRVELQTEDQILIKDVGEGSMTVTNDAEAVVRDLHRNGM
                     LGERRLLYIDSEGSVDELKHDGKGAFQGFAPGKST"
     gene            1716..2048
                     /locus_tag="VIJ87_08350"
     CDS             1716..2048
                     /locus_tag="VIJ87_08350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444462.1"
                     /translation="MKDDDPDMLDEKAVSLFVEKLRAIAMKDVSMAKDVLEVLQSSIQ
                     RDAKEDPFQIARTICEIMEPERLGGIVWMTCKLCNSKLDALEVENKVDTCFSCRIKGD
                     EPERGSCW"
     gene            2050..2349
                     /locus_tag="VIJ87_08355"
     CDS             2050..2349
                     /locus_tag="VIJ87_08355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444463.1"
                     /translation="MKTNKSAMKLCKGYCKRCNKSGHHWEPILTTHGHLQMMRCVHCP
                     AALGPLEKCADCNHDLEHHEFDGTLECLIVVPDPKKDGRCPCKTFIIKGLAGVIK"
BASE COUNT          626 a          646 c          712 g          503 t
ORIGIN      
        1 aacagcaatc gagcagcagg atcgatgaac gtatgaagac cgggcctata ggagagaaat
       61 gccagtgtgg ggccgataac tggtgcatca cggccacgat gatcgaatgc ctcgcatgct
      121 tccgtctctg gggacgtgta aatggactct gggtcgaagt gattgagccc caaaagactg
      181 gtggataatg ctacagggtg atctcacgct cgaagacatg aagcggatct ccggagacgt
      241 ctgcagctac ctgaccaagt tgcaaatgag tcctgagatc atctgcaagg aagttgtctc
      301 ggatgaaaag cactattggg cggagctgaa gcgcgacgtt ctggcagaga tcgtagagaa
      361 ggccactcag ctttatctgg cccatggtgg gagcacgatt tcaaacatca caaagcactt
      421 cagagaaaac ggtaatcctc gctgcttctg tgggtgtcct aattcggtga aacagcaata
      481 agcacggcag cgaagccgat gatctaatga aagcgactac cagcctttac ggaaattgtg
      541 tggttctgac cggcgatacc gtcatgtttc gctgtgacca ggagcgcatg aactggtacc
      601 tctcaatggg cctggcggac atcgtgacga aagagcctcc cgtcattcgc ctcaatttca
      661 agcccaaagg ccctgggcat cacggtgacc cttatttcct tcaggagttc aagaaccgct
      721 gtgttgtctg cgggatcacg gataacctgt cccatcacca tattgtcccc tattgctata
      781 ggagatactt ccccaaggac agctacgaga atggccgttg gttctacgat gttcttctgc
      841 tctgcctggg atgccatgat tcctatgagg agcgggctca ggaactcaag cagtcgatcg
      901 ctcatgagca tggcgttcct ccctggggaa cgactaccct caatgacgac gaagcccaaa
      961 tcatgaaggc cgcgattacc cttcatcgtc atcgggataa gctccccttc gatagacggg
     1021 atcgtttcga gaagatcgtg aagacctacc tcgggaaaga agaactcctt cctgaagatc
     1081 ctgaaaacgt cttcgatatc atcaaggatg gcatcgtcac gacctcggcg gccgagatca
     1141 tcgtctccaa gctgagagat ctggacgact tcgccatccg gtggcgccgg cacttcctca
     1201 ggcatatgaa gccccgattc ctgccggatc tctgggtagc tgagcgccgc atctatacgg
     1261 agcctaacaa aagatgaatc tcgaagatct ccaggcgaag ctccatcaga tgggttcggc
     1321 agaagcctcc gccctgggac aggctctcga gaccatttgg tgggacgaat cggacgacgt
     1381 gaaggcccag gaactggcga tcgcttatat gcgagagatc cagggctggg cgaaaagagt
     1441 agaggaagta ttgactggcg tcaggaagga actttgatca tgaccagggc aaaatatcgg
     1501 gtggaactcc agacggaaga tcagatcttg atcaaggacg tcggggaagg ctcgatgacc
     1561 gtgacgaatg atgccgaggc tgtggttcgg gatcttcatc ggaacggaat gcttggagaa
     1621 cgccgactcc tttacatcga ctccgaaggc agcgtggacg agctcaagca cgacggcaaa
     1681 ggcgccttcc agggcttcgc gccggggaag agcacatgaa ggacgacgat ccggatatgc
     1741 tggacgagaa agctgtatcc ctcttcgtcg agaagctccg cgcgatcgcc atgaaggatg
     1801 tctccatggc caaggacgtg cttgaggtcc tccagtcttc tattcagcgt gacgcgaagg
     1861 aagacccatt ccagatcgca cgcacgatct gtgaaatcat ggagccggag cggctgggtg
     1921 gcatcgtctg gatgacctgc aagctctgta atagcaagct ggatgccctc gaggtcgaaa
     1981 acaaggtgga cacctgtttc tcctgtcgga tcaaaggaga tgagccggaa cggggatcgt
     2041 gctggtaaca tgaagaccaa caagagcgcc atgaaactct gcaagggata ctgcaaacgc
     2101 tgcaacaaaa gcggccatca ttgggaaccg atcctgacca cacatggcca tctgcagatg
     2161 atgaggtgcg tccattgccc ggcggctctc ggacccctgg aaaaatgcgc agactgcaac
     2221 catgacctcg agcaccatga attcgacggc acgctcgaat gcctgatcgt tgttccggat
     2281 ccgaagaagg atggccgctg tccgtgtaag actttcatca tcaaaggact cgctggagtg
     2341 atcaaatgat tcatgtcgcc aaagaagaag atctgaagaa gctggggcgc cgcggattcc
     2401 tccggatgtt cggcaccacg gccgccagcg cggtggtggc gccgaccaag acgttcgtct
     2461 tcttcggaga tatcttcagg ccaagga
//
LOCUS       DATCGC010000865         1140 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_81428, whole genome shotgun sequence.
ACCESSION   DATCGC010000865 DATCGC010000000
VERSION     DATCGC010000865.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1140)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1140)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1140
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_81428"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..194)
                     /locus_tag="VIJ87_08360"
     CDS             complement(<1..194)
                     /locus_tag="VIJ87_08360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444464.1"
                     /translation="MRQSNYKVMFRRGALCPLPLGLLLGIALTFGMNTWMATEAVALT
                     VSPTALTFQAAQGGTNPPSQS"
     gene            complement(555..1109)
                     /locus_tag="VIJ87_08365"
     CDS             complement(555..1109)
                     /locus_tag="VIJ87_08365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444465.1"
                     /translation="MTCAIYAKTATEQQRIGNVMRYVLILALMVLSHLDTTAARAGRV
                     EDRESLRRLPGVEVIVETFLSEEEAAGFSREAIRTGVELVLQSNGIRILSASERLQTS
                     SAPFLYVKVNPLKHSSADTFCLAIEVELHQAVSLLNRPEQKMSARTWNRVQVAMIGDQ
                     ITGRVTEVVEPLIKQFANDFLTVN"
BASE COUNT          261 a          309 c          280 g          290 t
ORIGIN      
        1 gattgactgg gcggattagt tcctccttga gcagcttgaa aggtcaaggc cgttgggctc
       61 accgtcaacg ccacagcttc agtggccatc caggtgttca tcccgaatgt caaagcaatg
      121 cctagcaaca gtccaagtgg aagaggacac agggcaccgc gtcggaacat taccttgtaa
      181 tttgattgac gcataccatc ctacttctgt gtgtgttggt ttaatcccag atggacggac
      241 caatcgtttc ttgtgcaaca gcgatgccat cacgacctct actcgcatgg ccttaagata
      301 gttcgccttc cggctcaaaa aagatcattg aaggatggtg cggttatcag catttgatag
      361 cactgctcga agtcatgtac ggaagacgtt gcatgattct gccttcattg atgacagact
      421 tgttcacaat tagggttgga aacatttttc ccatggcgcc attgcaccgt agcaagcgat
      481 gccatcccac ggcaatcctg ggacgctgta tatcgggcta gtcgaagaga gcgcgcactc
      541 cttccttctg cgtgctagtt gacggtaaga aagtcattgg caaattgttt tattaggggc
      601 tcaaccacct cggtcactcg gcctgttatt tgatccccga tcattgccac ctgcactcta
      661 ttccatgtac gcgcagacat tttttgctcc ggtctgttca gcaatgacac tgcctggtgg
      721 agttcaactt ctatcgctaa acaaaaggta tccgcactgc tgtgtttgag agggttcacc
      781 ttcacgtaca gaaagggtgc ggaggaggtc tggagtcgtt ctgatgcact gagaatcctt
      841 atcccgttag actgaagcac cagttcgacg cctgtgcgaa tcgcctcccg tgaaaagcca
      901 gcagcttcct cctctgacaa aaatgtctct acgataacct ccaccccagg cagtctgcgt
      961 agtgattcac ggtcctcaac ccgccctgct cgcgcggccg tggtgtcgag gtggctcaga
     1021 accatcaaag ccagaatcag gacatatcgc atgacatttc ctatgcgctg ctgctcggtg
     1081 gcggttttgg cgtaaatagc acaggtcatc gctcaaccct ccgcaccttg catgctcatg
//
LOCUS       DATCGC010000866         1129 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_81437, whole genome shotgun sequence.
ACCESSION   DATCGC010000866 DATCGC010000000
VERSION     DATCGC010000866.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1129)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1129)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1129
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_81437"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..244
                     /locus_tag="VIJ87_08370"
     CDS             <1..244
                     /locus_tag="VIJ87_08370"
                     /inference="COORDINATES: protein motif:HMM:NF019040.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1501 domain-containing protein"
                     /protein_id="HEY5444466.1"
                     /translation="TDHGHANAMFVLGNSVRGGKVYGQWPGLKSDQLYEGRDLAMTTD
                     FRDVFGEIASRHLGNKNLQSVFPGYSLSESKFKGFL"
     gene            complement(333..992)
                     /gene="modB"
                     /locus_tag="VIJ87_08375"
     CDS             complement(333..992)
                     /gene="modB"
                     /locus_tag="VIJ87_08375"
                     /inference="COORDINATES: protein motif:HMM:TIGR02141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015412 - ABC-type molybdate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015689 - molybdate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HEY5444467.1"
                     /translation="MVDWFPIRLSFVVASAATLIALIAGSALAWLLARKRFPGRNLVD
                     AIVTLPLVLPPTVLGYYLLVLLGTRSTLGGFLFNKFGIRLTFTVTAAIIAASIHALPL
                     VTKSLRAAFEGVNLELEAAARTLGLNNRRIFFRVTLPLASKGVLAATALAFARALGDF
                     GVTIMIAGNIPGKTQTASVAIYDAVQAGRDNEAFTLAVTVSVIAAVMLYLINRFGSLR
                     W"
BASE COUNT          293 a          275 c          305 g          256 t
ORIGIN      
        1 aaccgaccac ggacacgcca acgcaatgtt tgttcttggc aacagtgttc gcggaggaaa
       61 agtctacgga caatggccag gtcttaagtc agaccagttg tacgagggtc gcgacttagc
      121 gatgactaca gacttccgcg acgtgttcgg tgagattgcg agtcgacatc ttggaaataa
      181 gaacctgcaa agtgtgtttc ctggttactc gctcagtgag tcgaagttca aaggctttct
      241 atagatctca gatctcaggt ctcagatttc agataatctt agatctcgag tttcagaagg
      301 tttgtatctg agatctgaga tctgagatcg ttctaccacc tcaggcttcc gaacctatta
      361 atcaaataca gcatgacagc agcaatcact gaaacagtta ctgctaaagt gaaagcttcg
      421 ttgtcacgtc ccgcctgaac cgcatcgtag attgccacag aagcagtttg cgtcttaccg
      481 ggtatgtttc cggcaatcat gatcgtcacg ccaaagtcgc caagcgctcg tgcaaatgcg
      541 agagctgtgg ccgccagaac gccttttgag gcgagcggaa gcgtcacgcg aaagaagatc
      601 cggcgattgt tcaatcccaa cgtacgtgcc gccgcttcca attccaggtt cactccttcg
      661 aacgcggcgc gaagactctt tgtaaccagc ggcagcgcat gaattgaagc ggcaattatg
      721 gctgccgtta cagtaaaggt cagacggatc ccaaacttgt tgaagagaaa accaccgagg
      781 gttgaacgtg tgccgagcaa tacgagaagg tagtaaccaa gaaccgtcgg cggcaaaaca
      841 agtggcaacg ttacgatcgc atcgaccaga tttcgtccgg ggaaacgctt acgcgccagt
      901 agccatgcga gcgctgagcc tgcaatgaga gcgatgagtg tcgcagctga tgcaacgaca
      961 aaggacagcc tgatagggaa ccagtcgacc attgttggtg tgcggagaaa gtgttcgagc
     1021 gagcgcgagg catgttaacg cagtcgagtg gttggtgtga accaatgctt ctgtcttgtt
     1081 ggaaactcgt gagtccctct gtggcaatca attcatttgc ggctttgcc
//
LOCUS       DATCGC010000867         1082 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_410940, whole genome shotgun sequence.
ACCESSION   DATCGC010000867 DATCGC010000000
VERSION     DATCGC010000867.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1082
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_410940"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1082)
                     /gene="leuC"
                     /locus_tag="VIJ87_08380"
     CDS             complement(<1..>1082)
                     /gene="leuC"
                     /locus_tag="VIJ87_08380"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: protein motif:HMM:TIGR00170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HEY5444468.1"
                     /translation="RPGLTVGTADHNVPTTDRSLPIADAIAAKQIETLRQNCIEFGIQ
                     LFDIDSPEQGIVHVIGPELGLTQPGMTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLA
                     TQCLPQSKPRTMKVQTSGRLPEGVTAKDLALGIIGKIGTDGATGYVIEYAGEAVRALS
                     MEGRMTLCNMSIEAGARAGMVAPDETTFEYVKGRRFAPQGEAWDAAVSYWRTLVSDDD
                     AVFDKVVEIDASTLEPFVTWGTNPGMVVPISSVVPDPADATTLADRQAAERALEYMAL
                     KPSTSIEDISIDRAFIGSCTNARIEDLRAAARVVKGYHINSSVSALVVPGSYDVKQAA
                     EREGLDRIFSDAGFEWREPGCSMCLG"
BASE COUNT          239 a          326 c          269 g          248 t
ORIGIN      
        1 attcccaagc acatcgaaca gccaggctca cgccactcaa agccggcgtc actgaatatg
       61 cggtcgagtc cttctcgttc cgctgcttgc ttgacgtcgt aagagccggg cacaaccagc
      121 gcactgactg acgagttgat gtggtaaccc ttgacgacac gagccgcggc gcgcaggtct
      181 tcgatccgcg cgtttgtgca agagccgatg aaggctctgt cgatggagat gtcttcaata
      241 cttgtcgatg gcttcaacgc catgtactca agggcgcgtt ccgccgcttg tcgatcagcc
      301 agcgtggttg cgtcggcagg atctggaaca acactcgaga tcggaacgac cattccagga
      361 tttgtgcccc acgtcacgaa aggctccaat gttgaagcat caatctcaac aactttgtcg
      421 aacactgcgt cgtcgtcact gactaaggtt cgccagtaac ttaccgccgc atcccaagct
      481 tcgccctggg gagcaaatcg acgacccttg acgtactcaa atgttgtctc gtctggcgcg
      541 accatccctg cacgcgcacc ggcttcgatg ctcatattgc agagagtcat gcgaccttcc
      601 atcgacagtg cacgtaccgc ttcgccggca tactcgatga cgtaacccgt ggctccatct
      661 gtaccgatct tgccaataat ccccagggcg agatcttttg cagtcactcc ttcaggcaac
      721 cgtccggacg tttgcacttt catcgtgcgc ggtttgcttt gcggcaaaca ctgagtcgcc
      781 agcacgtgct cgacttcact cgtgccaatg ccaaatgcca gcgcaccaaa cgctccatgt
      841 gtactggtgt gactatcacc acaaacgatc gtcatgcccg gttgagtcaa tcccaactcg
      901 ggcccaataa cgtggacgat gccttgttca ggcgagtcaa tatcaaagag ttgaatacca
      961 aactcaatac agttctgtcg taacgtttcg atttgcttcg ctgcaattgc atctgcgatt
     1021 ggcaagcttc gatccgtggt cggaacgttg tgatccgcag tgccaactgt cagaccagga
     1081 cg
//
LOCUS       DATCGC010000868         1053 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_17001, whole genome shotgun sequence.
ACCESSION   DATCGC010000868 DATCGC010000000
VERSION     DATCGC010000868.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1053
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17001"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..971)
                     /gene="rimO"
                     /locus_tag="VIJ87_08385"
     CDS             complement(<1..971)
                     /gene="rimO"
                     /locus_tag="VIJ87_08385"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR00089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008172 - S-methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0018339 -
                     peptidyl-L-beta-methylthioaspartic acid biosynthetic
                     process from peptidyl-aspartic acid [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HEY5444469.1"
                     /translation="MKKIGFISLGCPKNLVDSEVMMGQLKANGYQITANAEEADTVVV
                     NTCGFIDSAKKESIDTILEAAQLKVTGKAKRLVVAGCLVERYRDELKAAMPEVDAFIG
                     TSQINDILAVCDPKTNTRSLPVVPLGNQTSTYLYDESTPRILATPSHYAFVKIAEGCD
                     RPCAFCFIPQMRGHFRSRRFGSIVAEAHQLAEEGVKELILVAQDSSRYGEDLGKLDAL
                     PGLIRELAKTDGIEWVRVMYTYPTHISDGFLDAIADEPKAVNYLDMPLQHASQNVLKL
                     MKRGGNRKSLERLIERVRKRVPNIAVRTTFITGFPGETEADFEELMA"
BASE COUNT          276 a          301 c          230 g          246 t
ORIGIN      
        1 aaggccatca actcttcaaa gtcagcttca gtctcacccg ggaaaccagt gatgaacgta
       61 gtgcgcactg cgatgttggg aactcgcttt cgcacgcgct caatcaatcg ttctagactc
      121 tttcgattgc caccacgctt catcaacttc aacacatttt gcgacgcatg ttgcaacggc
      181 atatccagat agttcacagc ttttggttca tcagcaatcg catccagaaa accatcgctg
      241 atgtgcgtgg gataggtgta catcacacgc acccactcaa tgccatcagt ttttgccaac
      301 tcacgaatca ggcccggcag agcatccaac tttccaagat cctcaccata gcgcgatgaa
      361 tcctgtgcaa ccaggatcaa ctctttgaca ccttcttccg ctaactggtg agcttcggct
      421 acgatcgatc caaacctgcg actgcgaaag tggccacgca tctgcggaat aaaacagaac
      481 gcgcagggac gatcgcaacc ttcagctatt tttacaaaag cataatggga cggagtcgcg
      541 agaatacgtg gagttgattc gtcgtaaagg taagttgacg tctgattgcc gagtggaacg
      601 acgggcagtg aacgagtatt cgtcttcgga tcacagaccg caagaatgtc gttgatctga
      661 ctggtaccga tgaacgcgtc gacttccggc atcgccgcct tcaactcatc gcggtatctt
      721 tcaaccaggc agcccgccac cacgagacgc ttcgctttcc ccgtaacctt caactgcgcg
      781 gcttcgagaa tcgtatcgat cgattccttc tttgctgaat caatgaaccc acaagtattg
      841 acgacaaccg tgtcagcctc ttcggcattc gcagtaatct gataaccgtt agcctttagt
      901 tgacccatca tcacctcgct gtcaacgagg ttcttaggac aacccaaact gataaatcca
      961 atttttttca taaacaacgt ccgctaatca aacccggtgc agtagcccga ctgtcaagga
     1021 gggcccaacc gggatccgta acaagcaatc gaa
//
LOCUS       DATCGC010000869         1054 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_445907, whole genome shotgun sequence.
ACCESSION   DATCGC010000869 DATCGC010000000
VERSION     DATCGC010000869.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1054)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1054
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_445907"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..217)
                     /locus_tag="VIJ87_08390"
     CDS             complement(<1..217)
                     /locus_tag="VIJ87_08390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444470.1"
                     /translation="MNILLVTPFELAANGGVSSTVRLLGCEFAKGNDVSVLLPGESNR
                     VVPLEQFNGIPVFSVYLRSPRVQRGCLL"
     gene            complement(257..>1054)
                     /locus_tag="VIJ87_08395"
     CDS             complement(257..>1054)
                     /locus_tag="VIJ87_08395"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY5444471.1"
                     /translation="STDNTERICLDYAAKDRRIRYYRLEKNLGMAANYKQVFELRTGE
                     YFKWAAADDICMPDYLSRCVEVLDSDSSVVLVCAKAMYIDENGALLSKGAPAWNVLSD
                     YPHERLRYIICVQSDAKVDAWSGVVRADALLKTRLIPSYPSGDKRALGELCLFGKFVE
                     IPEYLYMRREHENASSFNTANVEWMENFFNETSLNVFLPTVRLCVDHFITVMHSKLFV
                     ADKLCLALATLKVGYWSKNRVIKEIRIAAKYAVKAFLFSRGRSPGLR"
BASE COUNT          304 a          275 c          216 g          259 t
ORIGIN      
        1 gaagcagaca tccccgctga acacgtgggc tacgcagata aactgaaaac accggaatac
       61 cgttaaactg ctccaaaggt acaactcgat tgctctctcc aggcaacaag acgcttacgt
      121 cattcccctt cgcgaactcg catccaagaa ggcgaactgt ggaactaaca ccaccgttag
      181 cagcaagttc aaacggtgta actagcagaa tattcatgac actcaaatag tttgctgttg
      241 aagtcacctc aggttatcaa cggagacccg ggcttcgccc gcggctaaat agaaatgcct
      301 tgacagcgta cttagcagcg atccgtattt cttttatgac gcgattttta ctccaatagc
      361 caactttcag tgtcgccaat gccaagcaca acttatctgc aacaaataac ttagagtgca
      421 taacagtgat gaaatgatca acacacagtc gaactgtggg taaaaacaca ttgaggctgg
      481 tttcgttgaa aaagttttcc atccattcaa cgttggcagt attgaagcta gaggcgtttt
      541 catgctccct acgcatgtat aaatattcgg gaatctcaac gaatttccca aagaggcaaa
      601 gttctccgag tgcacgttta tccccgctcg ggtaactggg tatcaagcgc gtctttaaca
      661 acgcgtcagc tcggaccact ccagaccaag catctacctt agcgtcactt tgaacacata
      721 tgatataccg taggcgctca tgtgggtagt cagatagaac attccaagcg ggcgcgcctt
      781 tactaagcaa tgcaccattc tcgtcaatgt acatggcttt cgcacaaaca aggacgacgc
      841 tagaatcgct atccaatact tctacacaac gactaaggta gtccggcatg cagatatcat
      901 ccgcagcagc ccacttgaaa tactcaccag ttctcaactc aaatacttgt ttatagttag
      961 cggccattcc caggtttttc tcaagccgat aatagcggat acgccgatct ttggccgcgt
     1021 agtccaggca gattctttca gtattatccg ttga
//
LOCUS       DATCGC010000870         1458 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_145866, whole genome shotgun sequence.
ACCESSION   DATCGC010000870 DATCGC010000000
VERSION     DATCGC010000870.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1458)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1458)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1458
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145866"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            563..>1458
                     /locus_tag="VIJ87_08400"
     CDS             563..>1458
                     /locus_tag="VIJ87_08400"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY5444472.1"
                     /translation="MGALTSSEPGRQRHTNYTRALVAMLAATVLAGSILAQSGNRPLA
                     NASGGVMVSVIARRDDSKATPITSKELSIYDNGIEQAIRNFTPDPSPSHIVLLVDNSL
                     SIRADVDKLEQAAREFAYEIFEGDKLLIVGYDEQAEIVADWTDNAKSIESSLKLFRKK
                     GQPFLFDAIRAVVAEALQPLQNQKRVIVVISDGLDRGSKATFEQTLAQLQQENIMVYA
                     IQAVDRTRGAIRRDVPKPRVVIDKLAEGTGGQIFSIDQPSEAAKAICDELRKNRYVLS
                     YVPSSAPYGQARSLLVLGNQGIT"
BASE COUNT          401 a          403 c          355 g          299 t
ORIGIN      
        1 atttccgctt gcccccttcc cagcttgttc aatccacatg ggcgaccaac ccatgattgt
       61 tcgacccact gacacgtcca tggcatccct atccactgtt cgagccacga tgtcgtcctt
      121 accgccttcc caactcatca accccgagac tctttgccac cgtgttgctc acgtccgtat
      181 aatccaagac agctacacga acggagtcga aaactgtttc atgccgattt acgagtacga
      241 atgccagaaa tgcaagtcac acactgaggc atttcaaaag gtcaacgata agccactgac
      301 gaagtgtaag aagtgcggcg ggcgtctgga gaaaatgatc tcgaggtctg caattcagtt
      361 caagggttcc ggttggtacg tcaccgacta tgcctcaaag gcaacgaaga gtgataaagc
      421 ggaatccgag tcaaagaccg agtcaaagac tgagaaaaag acagaaaaga aatccacaga
      481 gagctcccca gctaagaaat cgaccgacaa ggcttcacct accaaagctt caagcgattg
      541 aagtcgttcc gcggcggcaa caatgggtgc gttaacctcc tcagaaccag gacgtcaaag
      601 acatacgaac tacactcgcg cgcttgtcgc aatgctcgct gcaactgtgc tcgcgggctc
      661 catccttgcg cagtcgggaa atcgccccct cgccaatgcc tccggcggcg tgatggttag
      721 tgttattgcc cgccgggacg acagcaaagc tactccaatc accagtaagg aactctcgat
      781 ctacgacaac ggaatcgaac aggcaatcag aaacttcact cccgacccat caccatccca
      841 catcgtttta ttggtcgaca actcactttc gatccgggcc gacgtagata aactcgagca
      901 ggcggcgcgt gaatttgctt acgagatatt tgaaggcgac aaactgttaa tagtcggcta
      961 cgacgaacaa gctgagatcg ttgccgactg gaccgacaac gcaaagtcaa ttgagtcttc
     1021 gctcaaactg ttccgaaaga aaggtcagcc attcctgttt gacgctatcc gcgcagtcgt
     1081 agctgaagcg ttacagccgt tgcaaaatca gaagcgcgtc attgtagtga ttagcgatgg
     1141 tttggatcga ggtagcaaag caacattcga acagacgctg gcccaactcc aacaagaaaa
     1201 catcatggtg tacgcgatac aggctgtcga tcggacccga ggtgcgatca gacgcgacgt
     1261 tccaaagcca agagtggtaa tcgacaaact ggcggaggga actggcggcc aaatcttttc
     1321 aattgatcaa ccatccgagg cagccaaagc gatctgcgac gagttgcgca agaatcgtta
     1381 cgtgctttct tacgtgccct cgagtgcacc ctatggccag gctcgaagtt tgttggtact
     1441 gggaaatcag ggcatcac
//
LOCUS       DATCGC010000871         2956 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_145876, whole genome shotgun sequence.
ACCESSION   DATCGC010000871 DATCGC010000000
VERSION     DATCGC010000871.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2956)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2956)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2956
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145876"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..754
                     /locus_tag="VIJ87_08405"
     CDS             <1..754
                     /locus_tag="VIJ87_08405"
                     /inference="COORDINATES: protein motif:HMM:NF024869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="XdhC family protein"
                     /protein_id="HEY5444473.1"
                     /translation="DRGSVAVVITLMSGLEGVGSKLLIDEAGDTVGSLGNAELDTQAL
                     RRAEEFLRSRDETRMISVSEFAPDLVNASDVLLLFERLQPAPRLVVCGAGHVGAALAK
                     LGVFVGYQTTLIDDRAEFVRADRFPEGQIELVVAQDWAEAVRQAVGTGRGVAIAVVTR
                     GHDQDEECMEAIVDVMPDYVGLIGSKRRTNIVIDNLRQSGASEDHLRNIRAPIGLDIG
                     AISPEEVALAIIAEIVAERRGAKGGSLSAWRR"
     gene            874..2142
                     /locus_tag="VIJ87_08410"
     CDS             874..2142
                     /locus_tag="VIJ87_08410"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY5444474.1"
                     /translation="MPVEAPAISSKSTPRIGKMFRALSHRNFRLFWIGAFLSNVGTWM
                     QAVAQGWLVLQLTNSAFWLGLDAFMATAPAFVLTLLGGVFADLIDRRRLLLYTQVVAG
                     AAALGLATLVATGVVNRWMVLGFSLVTGCCMSLASPSYLAMTYDLVGREDLANAIAMN
                     STQFQLSRVVGPTLAGVGFSLFGLAGCFYVNGLSFAAVVIALSMVRPLKPHEPDAHAV
                     IDRRSLLRNLFEGFRYVRNRPRVSSLLLLAAVNSLFGAPYFTLVPIYARDIFHLGATG
                     LALLMGTAGGGAFFGALLVAYLGDFRRKGWFVLGGSIMFGVCVTAFALSKWLPLSLIF
                     LFGLGFAIVVSIAITNTLLQKLVTDEMRGRVMSMFILSFMGTMPIGNIVAGSASHRFG
                     TEHTLAFGGIVVTVVATMVAIFNQRLRQLY"
     gene            2343..>2956
                     /locus_tag="VIJ87_08415"
     CDS             2343..>2956
                     /locus_tag="VIJ87_08415"
                     /inference="COORDINATES: protein motif:HMM:NF020076.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VIT domain-containing protein"
                     /protein_id="HEY5444475.1"
                     /translation="MLNYTRLIKLFLLISICFAAFAVAQAQGVIVPGPCERCPRPPRP
                     FPLPRSLPIASIKIDTKIQLQVATTHVEQVFRNDTDAMMEGTYLFPIPEAASIAEFAI
                     WDGNRRLVGEVRSREEARRIYDEIVRRQRDPGLLEYAGKDLFQASIFPILPHSDKKLE
                     ITYTQVVHAESGTVAYRYPLGTGRQITPIGSVAGRVEVESKDPLR"
BASE COUNT          615 a          764 c          792 g          785 t
ORIGIN      
        1 cgatcgcgga tcggtggctg ttgtgatcac gctaatgtcg gggcttgaag gcgtgggatc
       61 aaaactgctg atcgacgagg cgggcgacac cgttggaagc ctgggcaatg ctgaattaga
      121 tactcaggca ctgcgacggg ccgaggaatt tctgagatcg cgcgacgaga cccgaatgat
      181 ctccgtcagt gagtttgctc ccgaccttgt taacgcttcg gacgtccttc ttctcttcga
      241 aagactgcag ccggcaccgc gcttggtagt ttgtggcgcc gggcatgtcg gcgccgccct
      301 cgctaaactt ggagtctttg ttggttacca aacgactctg attgatgacc gcgctgagtt
      361 tgtcagggcg gatcgttttc cggaggggca gattgagctt gtagttgcgc aagattgggc
      421 cgaggcagtt agacaggctg tgggcaccgg acgtggcgtt gcaatcgctg tcgtaacaag
      481 aggtcacgac caggacgaag aatgcatgga agcgattgtt gatgtaatgc cggattacgt
      541 tggattgatt ggaagcaaac gacgcacaaa cattgtgatc gacaatctaa gacaatcagg
      601 tgcatccgag gatcacctca ggaatatcag agccccaatc ggactagata tcggcgccat
      661 cagccccgaa gaagtagcgt tggcaataat cgccgagata gtagctgaac gtcgtggcgc
      721 caagggtgga tccctttcgg cctggagaag gtgagatgtc cgataaactt tagtttgtcg
      781 ttgactaaaa ttaaggacgc ataacgcagt tcatggttcg acaattcatg ttttggtact
      841 caacgacaaa ctaaagttta tcggacattc ggcatgcctg tagaagcgcc agctatttca
      901 tccaagtcta ctccaagaat cggcaagatg ttccgtgccc tttcgcatcg gaatttccgt
      961 ctcttctgga ttggcgcgtt tctttccaac gttggcacat ggatgcaggc cgtcgcccag
     1021 ggttggctcg tactgcagct tactaactcc gctttctggc tgggcctcga tgcgttcatg
     1081 gcaacggcgc cagcatttgt tttgacgttg cttggtggtg tcttcgctga cttaattgat
     1141 cgtcgtcgtc tactcctcta cacacaggtg gttgcgggtg ctgcggcact cggactcgca
     1201 actctcgttg ccactggcgt ggtaaatcgc tggatggtat tgggtttctc acttgtcacc
     1261 ggctgttgta tgtctctcgc aagtccttca tatctggcga tgacctatga cctcgttggt
     1321 cgcgaagatc ttgctaacgc gatcgcgatg aactccacac agtttcagct ctcacgcgta
     1381 gttggtccca cattggcagg agtcggtttt agtctatttg gactcgccgg atgtttttat
     1441 gtgaacggac tttcattcgc tgcggttgtt atcgcgctct cgatggtgcg tccacttaaa
     1501 ccgcatgagc ctgacgccca cgctgtaatt gaccgtcgtt cgttgttgcg aaatctgttt
     1561 gaagggtttc gttacgtcag aaatcgtccg cgcgtgtcgt cgttgctttt actggcagcc
     1621 gtcaatagtt tgtttggcgc accatacttc acgctggttc cgatttatgc acgcgacatt
     1681 ttccatttgg gagcgactgg actcgccctg ttgatgggca cagcaggtgg cggcgcattt
     1741 ttcggagcat tgcttgtcgc ttacctcggc gatttcagac gcaaaggctg gtttgtgttg
     1801 ggtggttcaa tcatgtttgg tgtttgtgta accgccttcg ccctcagcaa gtggcttccg
     1861 ctttcattga tctttctctt cggtttggga ttcgcaatcg tggtgtctat cgcaatcacc
     1921 aacacactgc tacagaaact cgttaccgac gagatgcgtg gacgtgtgat gagcatgttc
     1981 attctttcgt tcatgggaac gatgccgatc ggcaacatcg tcgccggttc agcctcacat
     2041 cgttttggaa ccgagcacac gctggcgttc ggaggcatcg tagtaactgt ggtagcgacg
     2101 atggtggcga tattcaacca gcggctccgc cagctgtatt gaagacattt cggatttcga
     2161 atttcttgta acttagcttc ctcatagaac tctgagacgc ccttctgtca caagaaattc
     2221 gaaatcccca attcgaaatc cgaaatcttt tccgtgtcgc ctcccaagca acgcaagaag
     2281 catctaaccc ccacgttcta tcaccatcag agtgtttact tcgctctttt tggagatctc
     2341 aaatgctcaa ctacaccaga ttgattaagc ttttcctctt gatttcgatt tgtttcgcag
     2401 ctttcgcggt cgctcaagcc cagggagtga ttgtcccagg accttgcgaa cgatgcccgc
     2461 gcccgccgcg cccgtttcct ctacctcggt ccctgccgat tgcgtcgatc aagatcgaca
     2521 ccaagatcca gttacaagtc gcgacgactc acgttgagca ggtcttccgc aacgatactg
     2581 acgcgatgat ggaaggaacg tatctgtttc cgattcctga ggcagcctcg atcgcggagt
     2641 ttgcaatttg ggacggcaat cgacgtttgg tcggcgaagt caggtcgcgg gaggaagccc
     2701 gtcgcatcta cgacgagata gttcggcgcc agcgcgatcc aggtcttctc gaatatgccg
     2761 gcaaggattt atttcaagcc agtatctttc ccatcctgcc gcactcagat aagaaactcg
     2821 aaatcactta cacccaggtc gttcatgctg agtccggcac tgtggcctat cgctatccac
     2881 tgggtactgg tcgtcaaatc accccgatcg gttcagtggc cgggagagtc gaagtcgaaa
     2941 gcaaagatcc actgcg
//
LOCUS       DATCGC010000872         1132 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_81495, whole genome shotgun sequence.
ACCESSION   DATCGC010000872 DATCGC010000000
VERSION     DATCGC010000872.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1132)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1132)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1132
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_81495"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..727)
                     /locus_tag="VIJ87_08420"
     CDS             complement(<1..727)
                     /locus_tag="VIJ87_08420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444476.1"
                     /translation="MKRYYSRFPQNVRYFLFLTAKLRVNDSDSFITTIRAHDLIRYRA
                     LGKYLKVYELPEILTWQAIHDALPKLGKQGRANCQLIRSGLFELGNMYLQAGLLPSWE
                     SYLNEQRLDRYLKSTPAIFIEHVAAFERWAAHGMLNPKHEISLHESQPLAITTKSILE
                     TVYAVVVFLDWCVKRNICSLTNINQSTVATYKETLFWQQECKACRKRVPLEGDNTSET
                     CSNKECRATNSYLKIRRLARASVN"
BASE COUNT          271 a          283 c          273 g          305 t
ORIGIN      
        1 gattgactga tgcgcgcgcc aaccttcgga tcttcaaata ggaattggtc gccctgcatt
       61 ccttgttact gcatgtttca ctcgtgttat caccctctaa tgggactcgt ttgcggcacg
      121 ctttgcactc ctgttgccag aaaagagttt ccttataagt tgctactgtg ctttggttga
      181 tgttggttag tgagcagatg tttcgcttga cgcaccagtc gaggaatacg actaccgcgt
      241 aaactgtttc gagtatagat ttagtcgtaa tggcgagagg ctgtgattca tgcagactaa
      301 tctcatgttt cggattgagc atgccatgtg cagcccacct ttcgaaagca gctacatgct
      361 caatgaatat cgcaggagtt gacttcagat atcggtccaa tcgctgctca ttcagataag
      421 actcccagct tggcaggagc cctgcttgca aatacatatt gcccagctcg aacaaccccg
      481 agcggattaa ctggcaattc gctcgaccct gtttacccaa tttcggcaaa gcatcatgaa
      541 ttgcctgcca cgtcagaatt tcaggaagct cgtagacctt gaggtactta ccaagcgcgc
      601 gatagcgtat caggtcgtgg gcccgaattg ttgttatgaa gctgtcagaa tcattcactc
      661 tcagttttgc ggttaaaaac aaaaaatagc ggacgttctg cggaaatcgc gagtaatagc
      721 gtttcacgta gtcactgagg agcttcgggg cgagacgatc ggtgttgtga cgcacgcaga
      781 gttgcgactt cctattagcg attaacctcg ccgaacatcc ggtgactgta cactttcctt
      841 cgccattaag tcgtttgtag tagcacgcgt gacagatcgt tttcgacttg ttgaggcggg
      901 ctctcgtgag tccacaatcg acacatacca tcttcttagg gagtgacttt ctccaaattc
      961 tactgaggga cttccggtga catttacgac aaaggccggg atcactgaga aacgtataat
     1021 cagttcgccc gcactcctca catggcctca tttgcttaga atattttccc gcgcatcgac
     1081 gacaaagtga agagtctggt tgcaacctgc gaactgtcaa cgcgcacgcg cc
//
LOCUS       DATCGC010000873         1037 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_410980, whole genome shotgun sequence.
ACCESSION   DATCGC010000873 DATCGC010000000
VERSION     DATCGC010000873.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1037)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1037)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1037
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_410980"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..514
                     /locus_tag="VIJ87_08425"
     CDS             <1..514
                     /locus_tag="VIJ87_08425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444477.1"
                     /translation="TYGEEKAKAVLDDQVRGVYRLYRTFGGEDMDANRPSRDYRNTFQ
                     YAAIVTAKGALMFVELQNTLGDDKLFAALRNYYQANLFEIAQLEDLRSAIVAEAPIEQ
                     RRLVGRTFTRWLTSRRGDEDIAPPDQELASSLGIPSKQNPQKSGGDKNAFTAFAKVGK
                     FFWQQMTKIR"
     gene            567..>1037
                     /locus_tag="VIJ87_08430"
     CDS             567..>1037
                     /locus_tag="VIJ87_08430"
                     /inference="COORDINATES: protein motif:HMM:NF024822.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4112 domain-containing protein"
                     /protein_id="HEY5444478.1"
                     /translation="MALAMKLEELGIDPVVRQGRPRSAVPTGVENIERLGWLMDDLIR
                     IPVLGWRFGLDAIIGLIPALGDTTTSLVSFYILASAVRYRVPKITLLRMGLNIAIDYA
                     VGSVPVVGDLFDAFWKSNQMNVELLKRRAQVTVTEADKGKTSDWLFVALIIFGLI"
BASE COUNT          249 a          247 c          289 g          252 t
ORIGIN      
        1 cacttacgga gaagaaaagg cgaaagctgt tttggatgac caggtgcgcg gcgtctaccg
       61 actctaccgg acctttggcg gtgaagacat ggatgccaac cgaccgtcgc gcgactatcg
      121 taatacgttc cagtatgcgg cgattgtgac cgcaaaagga gcgctgatgt ttgtcgaact
      181 acaaaacacg cttggcgacg acaaactttt tgcggcgctg cgaaattact atcaggccaa
      241 tcttttcgaa attgcccaac ttgaggattt aaggagtgcc atcgttgctg aggcgccgat
      301 cgaacaaaga cgcctggtag gacgtacatt cacgcgctgg ctcacttcgc gacgcggtga
      361 cgaagacatc gccccgccgg atcaagagtt ggcgtcgtcg ctggggattc cgtcaaagca
      421 gaatccgcaa aaatcgggtg gggataagaa tgccttcacg gcattcgcga aggtcgggaa
      481 atttttctgg caacagatga cgaagattag gtaactaatg tcagatcgac gtctgttctt
      541 tcgttctgtg aatagttgtg agcaagatgg cactagcaat gaaactggaa gagttgggaa
      601 ttgacccagt cgtcaggcag gggcggccac ggagtgccgt ccctacaggt gttgagaaca
      661 tcgagcgact tggctggctg atggatgatc tgattcgaat cccggtgctc ggctggcgat
      721 tcggactaga tgcaatcatc ggcttgatcc ctgcattggg tgacacaact acgtccctgg
      781 tttcgttcta tatcctcgct tctgctgtcc gctatcgtgt tcccaaaatc accttgctca
      841 gaatgggact caacatcgct attgactacg ccgttggatc ggttccggtc gttggtgatt
      901 tgttcgacgc tttttggaaa tcaaaccaaa tgaacgtcga actcctgaaa cgacgcgccc
      961 aggtgacagt gacggaggca gataaaggga aaaccagtga ctggcttttc gttgccttaa
     1021 ttatttttgg cttgatt
//
LOCUS       DATCGC010000874         1101 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_17045, whole genome shotgun sequence.
ACCESSION   DATCGC010000874 DATCGC010000000
VERSION     DATCGC010000874.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1101)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1101)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1101
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17045"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1101)
                     /locus_tag="VIJ87_08435"
     rRNA            complement(<1..>1101)
                     /locus_tag="VIJ87_08435"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          208 a          335 c          254 g          304 t
ORIGIN      
        1 atgagatccg cagcttcggt acgattcttg agccccgttg aattatcggt gcaaagacgc
       61 ttgaccagtg agctgttacg ctttctttaa aggatggctg cttctaagcc aacctcctgg
      121 ctgtctcggc atcttcacgt cctttaccac ttagcatcga tttcgggacc ttagctggcg
      181 gtctgggctg tttccctttc gacaatggag cttagccccc actgtctcac tcccggatta
      241 cgtgtcgatg gcattcgaag tttgattgga ttcagtaacc tggtaaggcc cctagtccat
      301 tcagtgctct accaccatcg ccgaccatcc gaggctgccc ctaaaggcat ttcgaggaga
      361 acgggcaatc acgaaatttg attagccttt cacccctacc ctcagctcat ccgagctatt
      421 ttcaactaac accggttcgg acctccacgc ggtgttaccc gcgcttcatc ctggccaagg
      481 gtagatcatc tcgcttcgcg tctaatccca gcgactctaa cgcccatttc ggactcgctt
      541 tcgctacggc tcgcttgtgc ttaaccttgc cactgagatt aactagccgg ctcattatgc
      601 aaaaggcacg tcgtcaggca tgggggattg ctcccctata gccctccgac tgcttgtagg
      661 catacggttt caggtactct ttcactcccc tcacaggggt gcttttcacc tttccctcac
      721 ggtactggtt cactatcggt cgctagcgag tatttagcct tgcaagatgg tcctcgcagg
      781 ttcccacggg atttctcgtg tcccgcggta ctcaggaacc catccatcga gccagattga
      841 tttcgtctac aggtctgtca ccttctatgg atccactttc cagaggattc gactatcgat
      901 ctgattggta actcgacggc cttgcggcct agtgggccct acaaccccag agagcatgcc
      961 ctctggtttg ggctgatccg cgttcgctcg ccgctactag cggaatcact gacttgtttt
     1021 cttctcctgg aggtactgag atggttcact tccctccgtt gccctcacgc gactatgaat
     1081 tcatcgcgtg atactccggt a
//
LOCUS       DATCGC010000875         1214 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_211474, whole genome shotgun sequence.
ACCESSION   DATCGC010000875 DATCGC010000000
VERSION     DATCGC010000875.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1214)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1214)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1214
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_211474"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..290)
                     /locus_tag="VIJ87_08440"
     CDS             complement(<1..290)
                     /locus_tag="VIJ87_08440"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family A protein"
                     /protein_id="HEY5444479.1"
                     /translation="MSDSLSKKDSPLVSVIIPAYKVAPFIRETLDSVLDQPFTDLEVI
                     VINDGSPDTEELEAEIEDYRERIIYLKQSNLGAGAARNLGLRTARGEFVAFL"
     gene            complement(294..>1214)
                     /locus_tag="VIJ87_08445"
     CDS             complement(294..>1214)
                     /locus_tag="VIJ87_08445"
                     /inference="COORDINATES: protein motif:HMM:NF016800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HEY5444480.1"
                     /translation="VVLIFIVMVNVLRTEKRLRTLFMLSLLAGCVLSVSAISDYWTGR
                     LALRGLRIKGSIGGLFDNPNDLALHLVTAIPLAVALLFDSRNLFTKLFYGAVGILMVG
                     GLIATFSRGGFLGMACAAVILFWRIAGKNKWLLGIFLPIAFAVMIVVGPAGYLSRLAT
                     TNDGSAVARTADLKRSIYVALHHPLLGIGMNNYTLYSDNGLATHNAYTQVGVELGLAA
                     MVFYTLFLITPLRHLRRIAKETSSNRKKSLFYLAVGIEASLIGYMVSSFFGSVAYLWY
                     AYYLVAYGVCLRRLYATRDVSKPKPTFLAI"
BASE COUNT          364 a          319 c          263 g          268 t
ORIGIN      
        1 tctagaaatg caacgaattc tccccgcgcg gttcgcagac caaggtttct cgccgccccg
       61 gctcccagat tcgactgttt taagtaaatg attctctcgc gatagtcctc aatctcagcc
      121 tctaactctt cggtgtcagg cgacccatcg ttgatgacga tcacttcaag atcagtaaat
      181 ggttgatcaa ggactgagtc gagggtttca cggatgaacg gcgcgacctt atacgccgga
      241 attatcacgc ttacgagtgg tgaatctttt ttcgataacg aatctgacat tgcttagatt
      301 gccaagaaag taggcttagg ctttgaaacg tcgcgagtcg catacaaacg tctcaggcaa
      361 actccgtaag ccacaagata gtaggcatac cacaaataag ctaccgaccc gaagaaactc
      421 gacaccatgt agcctatcaa actagcttca attcctaccg ccaggtaaaa aagactcttt
      481 ttcctgttag aggaggtttc tttcgctatc cgtctcaaat gtcgcagcgg agtaatcaga
      541 aacaacgtat aaaacaccat cgcagccaaa cccaactcca cgccaacctg tgtataggca
      601 ttgtgggtag ccagtccatt gtccgaatac agtgtgtagt tattcatccc aatgccaagc
      661 aatgggtgat gaagtgcaac ataaatggag cgcttgagat cggcggtacg agcaactgca
      721 gaaccatcat tggtggttgc taatcgggaa agataaccgg ccgggccaac aacaatcatt
      781 accgcaaaag ctatcggtaa aaatatgcct agcagccatt tgttctttcc tgcgatcctc
      841 caaaacagaa taacggcggc gcaagccatt cccaaaaagc ctccccttga aaaggttgcg
      901 atcagaccac ctaccatcag tattccaaca gctccataga acaatttggt aaacaggttg
      961 cgcgagtcaa acaacaaagc aacggcaagc ggaatggccg ttactaagtg caacgccaga
     1021 tcgttaggat tatcgaataa gccgccgatt gaacccttaa tcctcaaccc ccggagagca
     1081 agtcttcccg tccaataatc agaaatggcc gagacgctca acacacaacc tgccagaagg
     1141 ctaagcataa agagagtgcg cagtcgcttt tccgtgcgca gtacattgac cataacgatg
     1201 aagatcaaga ctac
//
LOCUS       DATCGC010000876         1686 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_145909, whole genome shotgun sequence.
ACCESSION   DATCGC010000876 DATCGC010000000
VERSION     DATCGC010000876.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1686)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1686)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1686
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145909"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..295
                     /locus_tag="VIJ87_08450"
     CDS             <1..295
                     /locus_tag="VIJ87_08450"
                     /inference="COORDINATES: protein motif:HMM:NF018652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444481.1"
                     /translation="DVVRYIEAVENGRSAIVEQHELSPDDLRAEALYLGMRMMSGVNT
                     REYQQLFGVDVCEEYREDFSRFQEAGLIEFDGDLVRLTRAGALMSNEVFSSFI"
     gene            417..1112
                     /gene="cmk"
                     /locus_tag="VIJ87_08455"
     CDS             417..1112
                     /gene="cmk"
                     /locus_tag="VIJ87_08455"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: protein motif:HMM:TIGR00017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004127 - cytidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HEY5444482.1"
                     /translation="MNLIIAIDGPSGSGKSTLGRMLSRALNLLYIDTGSMYRAVALAT
                     IEQQLDPNNHDSVVKLAEGLDINLEGDPDSLKTLIGTRDVSELIRSESVTNMSSIVST
                     ISGVRKAMVARQRELGKRGAVLNGRDITTVVFPDAHYKFFLTADAGERAERRYQEDQL
                     KSSATSLAETLADMTERDRRDMSRSDSPLKIADDAIVIDSTGKSIEQVFQEMMRAIKP
                     EKESAADERGSGQ"
     gene            1355..>1686
                     /locus_tag="VIJ87_08460"
     CDS             1355..>1686
                     /locus_tag="VIJ87_08460"
                     /inference="COORDINATES: protein motif:HMM:NF012881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HEY5444483.1"
                     /translation="MFTGIIEELGKVRSIEERGENARIVIEAHVVIQGTNHGDSIAVN
                     GVCLTALDLQRDSFAADVSKETLARSTLGSLKHGAPVNLERSVTPATRLGGHIVQGHV
                     DARGQLLGV"
BASE COUNT          405 a          391 c          499 g          391 t
ORIGIN      
        1 cgatgtcgtg cggtatatcg aagcagtcga gaacggcagg agtgcgattg tcgagcaaca
       61 cgaacttagt ccagacgacc tgcgggctga agcgctctat ctcggaatgc gcatgatgag
      121 tggagtcaat acgcgagagt atcaacagct tttcggtgtt gatgtttgtg aggagtaccg
      181 ggaagacttc agtcgatttc aggaagcagg cttgatcgag tttgatggag acttagtgag
      241 actgacgcgt gccggcgcgt taatgtcgaa tgaagtgttt tcgagtttca tctaggacta
      301 agttgaccgg tgcagtagcc cgaccgtcag ggagggcttg aggtgcgcat tgtcgagagt
      361 ctgagccctc cctgacggtc gggctactgc accgtgacca caaactacag aacaacgtga
      421 acctaatcat cgccattgac ggaccttccg gatcagggaa atcgacgctt ggtcgcatgt
      481 tgtcgcgcgc tttgaacctg ctctacatcg atactggttc gatgtaccgg gcggttgcgt
      541 tggcaacgat cgaacagcaa ctcgatccta acaaccacga ttcggtcgtt aagttagctg
      601 aagggctgga catcaacctt gaaggcgatc cggattccct caaaaccttg atcggaactc
      661 gcgatgtctc ggaactgatc cggtctgaaa gcgtgaccaa catgtcgtca attgtttcga
      721 cgatatcggg tgttcgaaag gcgatggttg cccgacagcg ggaactcggc aagcgcggtg
      781 ctgtcctgaa tggtcgcgac atcacgacgg ttgtgtttcc agatgcgcat tacaagtttt
      841 ttcttactgc cgatgcgggt gagcgcgctg aacggcggta ccaggaagat cagttgaaaa
      901 gttccgctac gtcgttagcc gaaacattgg ctgacatgac tgaacgtgat cgacgtgaca
      961 tgagccgcag tgattcgccg ttgaagattg ctgacgacgc gatcgtgatt gattcaactg
     1021 ggaagtcgat cgaacaagtg tttcaagaga tgatgagggc gatcaaaccg gagaaagaat
     1081 cagccgcaga tgaacgcgga tcagggcagt gaagcaggta tgagactttt cacgttttca
     1141 tttaagcgag agagtgtttg gatgttggcg tttggtgttg cgccagcggt tattgggata
     1201 gtcgtcatgc tgttggtatg gatcctgaga tgatcgaacg agcaatgtcc gatatgcttt
     1261 agcttgtcgt cactgaacgg agcggatcgg tgttcatctc aaggcccaat ttcttcaagg
     1321 tcacgacaag ctgaagcata tcggacaaac aaacatgttc accggcatca tcgaagaact
     1381 cggcaaagta cgcagtattg aagagcgcgg agagaatgct cgcatcgtca tcgaggctca
     1441 cgttgtaatc caaggtacga accacggtga ttcgatcgca gtcaacggtg tatgtctgac
     1501 tgcacttgat ctgcaaagag attcgtttgc tgccgacgtg tcgaaggaaa cgttggcccg
     1561 ctcaacactg ggcagtctca aacacggtgc acccgtaaac ctggagcgct cggtcacgcc
     1621 cgcgacgcgc ctgggtggac acatcgttca aggtcacgtc gatgcccgcg ggcagttgtt
     1681 gggagt
//
LOCUS       DATCGC010000877         1118 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_81587, whole genome shotgun sequence.
ACCESSION   DATCGC010000877 DATCGC010000000
VERSION     DATCGC010000877.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1118
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_81587"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            121..726
                     /locus_tag="VIJ87_08465"
     CDS             121..726
                     /locus_tag="VIJ87_08465"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="J domain-containing protein"
                     /protein_id="HEY5444484.1"
                     /translation="MSHYETLGVKPDADAAEIKRAYRKRAESAHPDKKGGNQDEMMAI
                     NHAFDVLGDPKRRLLYDATGQDSQRPIAEQVRGLLMQGFQNALAKGSHTILKDVRWFI
                     KEAEAKTVESQRESRKAIKELQARRKKIKTKGKENVFHMIVDGEIRKLEQNIAVMDEG
                     LKVVAEAFKALDEYESSEKEPTSPSQTLYINPFSATSSSGW"
     gene            736..>1118
                     /locus_tag="VIJ87_08470"
     CDS             736..>1118
                     /locus_tag="VIJ87_08470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444485.1"
                     /translation="MIREQPSTAGIPIFRELDGIEAAEIFAHDLEQAIIDLLATGEFK
                     QKALDLFEKSGKFGAGAAYPVVIMIANMRIKVYTSVEAARSKEKMPPPQSHSLVIETG
                     KHGPDSEEVITSDVQISRIIGTDTS"
BASE COUNT          320 a          272 c          312 g          214 t
ORIGIN      
        1 tattgacgtt ccttttgagg cagcgcatga ggccaagtat ccggccatcg ttctcgagga
       61 actgcttgcc gcagatgaaa ttactttcga acaatacgaa cgactacaac gagagaacaa
      121 gtgagccact acgaaacatt gggagtgaag cctgacgccg atgctgcgga gattaagcgt
      181 gcctatcgca agcgtgcgga gtccgcgcat cccgataaga agggcggcaa ccaggatgag
      241 atgatggcga tcaaccacgc cttcgatgtt ctgggtgatc cgaagcgccg actgctttac
      301 gacgctaccg ggcaggattc gcagcgaccg atcgcagaac aggttcgcgg attgctgatg
      361 cagggatttc agaatgcgtt ggctaaaggc tcgcacacga ttctcaaaga cgtgcgctgg
      421 ttcatcaagg aggcagaagc gaagaccgta gagagtcaac gcgaatcgcg aaaggcaatc
      481 aaagaactcc aggcacgtcg gaagaaaatc aaaaccaagg gcaaagagaa cgtctttcac
      541 atgatcgttg acggtgaaat tcgcaaactc gaacagaaca tcgcagtcat ggatgagggt
      601 ctgaaagttg tcgccgaagc attcaaggct ctggatgaat atgaaagtag cgagaaggag
      661 ccgacgtcgc catcgcagac gctttacatc aacccgttta gcgccacatc atcgtcaggt
      721 tggtaaggag aacaattgat tagagaacaa ccatcaacag cagggattcc gatttttcga
      781 gagctcgacg ggatcgaggc agccgaaatt ttcgcgcacg atctcgagca agcaatcatc
      841 gacctgctcg ctactggaga gttcaaacag aaggctctcg accttttcga aaagagcggg
      901 aagtttggcg ccggcgcagc ctaccctgtg gtgattatga tcgccaacat gaggatcaaa
      961 gtgtacacat cggtagaagc tgcgcggtcg aaagagaaga tgccgccacc tcagagccat
     1021 tcacttgtga ttgagactgg taagcatggc ccagactccg aggaagtgat cacatcggac
     1081 gtgcaaatct cgcgaatcat cgggactgac acttcgaa
//
LOCUS       DATCGC010000878         1056 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_211582, whole genome shotgun sequence.
ACCESSION   DATCGC010000878 DATCGC010000000
VERSION     DATCGC010000878.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1056
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_211582"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(185..>1056)
                     /locus_tag="VIJ87_08475"
     CDS             complement(185..>1056)
                     /locus_tag="VIJ87_08475"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEY5444486.1"
                     /translation="NSFEQATHASARYLKDLANRYNGNWELAMAAYNTGAGNVDRAIA
                     RAGTANFWMIYPYIAQETRNYVPNILAVILIAKNPEKYGFRGIKPDAPISYDVVQVPN
                     ATSLQLIADATDTSVDVIRNLNPELKRDITPRGDVYNVRVPAGRSTLFASVLKRISPD
                     KRETARVISVAPGEDWQNVANRIGVSVPQLQAMNGGVDLKSATKLVVPSGSVKLTRWV
                     RAKPGTEPEAPTASLTKYRARKGDTIAKIAASKNLDVNDLARLNGITADAELRAGQEV
                     KLPGASTATSKRR"
BASE COUNT          239 a          279 c          254 g          284 t
ORIGIN      
        1 cttgtcgcgc tctcgcaatt aagtcagcca cagatagaca cagcctttcc ttttctatct
       61 gcgtcgatct gtttatctgt ggctaagctc ttccgacaac cgacaagaca gacgcatatc
      121 ggacatgaaa aagcgcgccc ggaaaatcca agcgcgctct atgttctgat ttgctgtaga
      181 ggttctagcg acgttttgat gttgccgttg acgctcctgg aagtttcact tcctgaccgg
      241 cgcgaagttc tgcatcagcg gtgattccgt tcaagcgagc cagatcgtta acatcaagat
      301 tctttgaagc agcgatcttc gcaatcgtgt cgcctttccg tgctcgatat ttagtcaagc
      361 tcgcggtagg tgcttccggt tcagtacccg gcttagctct tacccaacga gtcagcttca
      421 cacttccgct cggcactaca agcttggttg ccgatttaag atccacgcca ccgttcatgg
      481 cttgcaactg tggaacgcta actcctatcc ggttagcaac gttctgccag tcttcacctg
      541 gtgcaactga aatcacgcga gctgtttctc gcttgtcagg tgaaattctc ttcaacacgc
      601 ttgcaaacag agtcgagcgt cctgctggaa ctctgacgtt atagacatcg ccgcgcggcg
      661 taatgtcacg cttcaattcc ggattcaaat tgcgaatgac atcgacgctt gtgtcagttg
      721 catcggcgat tagctgcaag ctggttgcgt ttggaacttg aacgacatca taagaaattg
      781 gtgcgtcggg tttgattccc ctgaagccgt atttttcagg attcttagca atcaaaatca
      841 ccgccaggat attcggaacg taattgcgag tctcctgtgc gatgtacgga taaatcatcc
      901 agaagttagc cgtaccggca cgagcgatgg cacgatcaac attgccggcg ccggtgttgt
      961 acgcggccat agccaattcc caattgccgt tgtaacgatt ggcaagatct ttcaggtaac
     1021 gagctgaagc atgggtcgcc tgttcaaaac tgtttc
//
LOCUS       DATCGC010000879         1269 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_179828, whole genome shotgun sequence.
ACCESSION   DATCGC010000879 DATCGC010000000
VERSION     DATCGC010000879.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1269)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1269)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1269
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179828"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(172..1191)
                     /locus_tag="VIJ87_08480"
     CDS             complement(172..1191)
                     /locus_tag="VIJ87_08480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015352718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY5444487.1"
                     /translation="MAVDQLTISDEQLLDKLGSARELLLREIRKAIIGQDDVVEQVLL
                     SLFVGGHSIITGVPGLAKTLLVRTISSVLDLSFKRIQFTPDLMPADITGTEIIEEDRA
                     TGRRALQFIRGPIFANIVLADEINRTPPKTQAALLEAMQEGRVTVQGVSYDLPKPFHV
                     LATQNPIEMEGTYPLPEAQLDRFMFMVKIGYLPEEQEVAVVKQTTSPQDYEFKQVMNA
                     DEIIEFQRLVKQVPASDTVSRYAVRLVNASRPGTPAAPDFVNKWVTWGGSLRASQFLI
                     FGGKARAILRGRYNVSCEDVRAVAPAVLRHRVLLNFQAEAEKVDSDQVIKQLIETVPE
                     PKSGL"
BASE COUNT          273 a          344 c          333 g          319 t
ORIGIN      
        1 agcgagccaa cacgtgcgag tagttctgga tcgagaaagc gtgccggtgc ggtggaggtt
       61 gccgttgact gcggcaccgc tgttgtcgtt gcactttgtt tgtttcgtct aggccagatc
      121 attggtcatg ttcacgatca ctgaacgttc ggagtagtag ccgaccacta tctacaatcc
      181 actctttggt tcgggcacag tttcaattag ctgtttgatc acctgatccg aatcaacctt
      241 ttcagcttcc gcctggaagt taagcaagac ccgatggcgt aacactgccg gtgcgaccgc
      301 gcgcacgtct tcgcatgaaa cgttataacg tcctcttaga atggcgcggg ccttgccccc
      361 gaagatcagg aactgcgacg cgcgaagaga accaccccag gttacccact tatttacgaa
      421 gtccggcgca gcaggtgttc ccggtcggct cgcgttaacg agacgcacgg cgtagcgcga
      481 gactgtgtct gacgcaggaa cttgtttgac gagtcgctga aactcaatga tttcatccgc
      541 gttcatcact tgcttgaact cataatcctg cggcgatgtg gtttgtttga cgacagcgac
      601 ttcctgttcc tcgggcaaat aaccgatctt caccatgaac ataaagcgat cgagttgcgc
      661 ttcaggcaat ggataagtgc cctccatttc gatcgggttc tgagttgcca gtacgtgaaa
      721 cggttttggc aaatcgtaac tgacgccttg caccgtcaca cgaccttcct gcatcgcttc
      781 aagcaacgcc gcctgtgtct ttggtggcgt gcgattgatt tcgtcagcga gcacgatgtt
      841 ggcgaagatt ggtccgcgaa tgaactgtaa tgcacgacgc ccggtcgctc gatcttcttc
      901 gatgatctcg gtgccagtaa tgtcagccgg catcaagtca ggcgtgaact gtattcgctt
      961 gaacgacaga tccagaacgc tcgagatcgt tcggaccagt agcgtctttg ccaaccccgg
     1021 tacccctgtg atgatcgagt ggccgccaac aaacagcgac aacagtacct gttccaccac
     1081 atcgtcctgc ccgatgatcg ccttccggat ttctcgcagc agaagttcac gtgcggaacc
     1141 gagtttgtcg agtagttgct cgtcgctgat cgttaactgg tcaacggcca tgggtaatta
     1201 gtttcctctc gttgtcctgc cacattgcag aatgaagatt gaatgtccga taagctttag
     1261 cttgtcgag
//
LOCUS       DATCGC010000880         1578 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_480131, whole genome shotgun sequence.
ACCESSION   DATCGC010000880 DATCGC010000000
VERSION     DATCGC010000880.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1578)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1578)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1578
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_480131"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            303..788
                     /locus_tag="VIJ87_08485"
     CDS             303..788
                     /locus_tag="VIJ87_08485"
                     /inference="COORDINATES: protein motif:HMM:NF025887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEY5444488.1"
                     /translation="MRRQLLLVTGLILCFASLTYGQEAIPAPSPSPKPAMTKAQSQKI
                     IISTEKKLWEAWKNKQSKVFKTYLSADSVMIGDAGVATKAEAVKELEEMACEIKSYDL
                     SEIKVLFLNNDAAFMTYKAAQDGTCGGQPVPAAVWASSAYVKRGGKWFAASHQETPAK
                     P"
     gene            complement(1101..1478)
                     /locus_tag="VIJ87_08490"
     CDS             complement(1101..1478)
                     /locus_tag="VIJ87_08490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444489.1"
                     /translation="MSRKLFAFAAIFAILVVLQAQTPKTVTIEGNIIDNACAGAHSKD
                     ADFGARVKKHATSCALMDSCVTSGYAVLTSDAKFYKLDQAGNESTEAILRATATKSGL
                     AVVVEGTIDGDVIKVTKITEKTK"
BASE COUNT          389 a          406 c          389 g          394 t
ORIGIN      
        1 ccccaagctt cagcttgggg ttacagaagg ccctatcttg aggaaccatt ttaacggttt
       61 acgagtttga gccaatcaca ctccacgctg aagtttcatt agcgttctta ttcattcgca
      121 ctctggataa accgttgaaa cggttactga gcattgagcg caccataacc ccaagctgaa
      181 gcttggggag aatgagaacg ttcatacaca agctcggtcc cgacgtcgtt gacactaccc
      241 tgcctcggta gtaaaagtag cccgctaaat tcccagttca gtttctttaa aaggagcaaa
      301 ctatgagaag acaacttctt ctggttactg gtctgatctt gtgctttgcc tcattaacgt
      361 atggtcaaga agccatccct gcgccatcac cttcgccgaa gccggcgatg accaaagcac
      421 agagtcaaaa gatcatcatc tcgaccgaga aaaaactttg ggaggcatgg aagaacaagc
      481 agtccaaagt cttcaaaact tatctgtcag cggacagcgt gatgatcggt gatgcaggtg
      541 tggcgaccaa ggccgaagcg gttaaggaat tagaagagat ggcttgcgag attaagtcgt
      601 acgacttgtc ggaaatcaaa gtcttatttc ttaacaacga tgcagcattc atgacttaca
      661 aagctgcaca ggacggaacg tgtggcggac agccagtgcc ggctgcggtg tgggcaagca
      721 gcgcatatgt gaagcgagga gggaagtggt tcgctgcttc acatcaggag acacctgcga
      781 agccatagat cttcggtcca tcagcagacg actcaagatt cctctaagta tctagtccat
      841 ccccttcagt aacccctcca aaataacggg cgcgctcttc tgggaccgca ggcgtcctcg
      901 cctgcttgcc acgtcacaag cttgtcccga acctcagcag gcgaggacgc ctgcgctccc
      961 agaagagcgt gcccgtaaaa acttagtagc taccaactac gactcgcaaa aacaaatcga
     1021 gcgcggtagg tcgagtccac tcaagttttc ctgagacccg gcgctaccgc gctcgattct
     1081 gttgtgtatg ttgctgcttg ttacttcgtc ttttcggtaa tcttggtgac cttgattacg
     1141 tcgccgtcta ttgtgccttc aaccactacg gccaaacctg actttgttgc tgtggctcgc
     1201 aggattgctt cagtgctctc atttcccgcc tggtcaagct tatagaattt ggcatctgac
     1261 gtaagcaccg catatccact cgtgacacaa ctgtccatca aggcgcacga cgtcgcatgt
     1321 ttctttaccc gcgcaccaaa gtctgcgtct tttgagtgtg caccggcgca ggcattgtcg
     1381 atgatgttgc cctcgatggt gacagtcttt ggagtttggg cttgaagcac aaccagaatt
     1441 gcgaagatgg ctgcaaatgc aaaaagtttt cgactcatat tgtgaaactc cagtttagtt
     1501 gctatcaatg ttgttcatcg ggatttggtt ccgatgtttt gcgttcgggt cggaggtgcg
     1561 gaaacaatat cacgtccc
//
LOCUS       DATCGC010000881         2343 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_45926, whole genome shotgun sequence.
ACCESSION   DATCGC010000881 DATCGC010000000
VERSION     DATCGC010000881.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2343)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2343)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2343
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45926"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2343
                     /locus_tag="VIJ87_08495"
     CDS             <1..>2343
                     /locus_tag="VIJ87_08495"
                     /inference="COORDINATES: protein motif:HMM:NF019298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004866 - endopeptidase inhibitor activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-2-macroglobulin family protein"
                     /protein_id="HEY5444490.1"
                     /translation="NLLTLTSAGPDKRLDTDDDFIAEQFEWPYFLPVGEAINGAIFRY
                     HDKTHGFIRDQTTLNAEVAKAGISLPDLRDPWGTPYRFKFGVAASRYTIDVQSAGPDR
                     IFTEQPSRYDDDFLLSSSSIDYFAETRAGTASALNRWTTQQHPFPIDQSEFTAALRES
                     RIDLAKILDPFGHPYEVMFRMQTVYTDKVKLESSGPLGATQVTATPVTQTLRVISLNS
                     TGADGQSHTKDDFEVASFSGVISEEAATKAVKTQLISSIVMADNAGAIAGFITDPNGA
                     AIAGAQVSATSDLKSFVASSTDNGSYIISNVEPGSYTIQAEAPGFKKHIVTNVAVTPS
                     TATTVNIVLEVGATTETVTVTSSAPTITTRQIEDLPISGRQLQALNPRSVNVVTKSGT
                     NEPSFTPRLREYFPETLLWQPELTTDKQGRAHLDFKLADNITTWKLSVIGSNENGEVG
                     TAQTEIRAFQPFFAELDPPRVLTEGDRISLPVVLRNYLERKQTVDLEIQPETWFTLLA
                     GNRRRADVPAGDSSRQTFDLRAISSIENGKQRVTAIGSDSSDAIEKVVTVHPDGEEKT
                     DTTSDILQSTTSLAVNIPADVVPGSVHTELKIYPNLAAHVWESVEGIMQRPYGCAEQT
                     ISSSYPSLLVLQFMKESDKTSPLAARARRYVEAGYQKLLGYQSGDGGFTYWGRGEPDI
                     ALTAYALKFLQDSARLISVDKSVIEKAESWLLKKQRLDGSWPAWLWSNKEDPRRSAMV
                     TALVVRSLVPTLSANEDTAFKNAMSRALAYLNEQSRSIDEP"
BASE COUNT          611 a          618 c          585 g          529 t
ORIGIN      
        1 gaacctgctt acgctcacga gcgccgggcc cgataaacgt cttgataccg acgacgactt
       61 catcgctgag cagtttgaat ggccatactt tttacccgta ggcgaagcta tcaacggcgc
      121 gattttcagg tatcacgaca aaactcatgg attcattcgc gaccaaacaa ctctaaatgc
      181 cgaagtagcg aaagccggaa tctcgttacc agatctgcga gatccatggg gtacacccta
      241 tcggttcaaa ttcggtgttg ccgccagtcg atacacaatt gatgttcaaa gcgccggacc
      301 cgatcgcata ttcacagaac aaccgtccag gtatgacgac gacttcttac tcagcagcag
      361 ctcaattgat tacttcgccg aaactcgcgc gggcactgct tccgcactga accgttggac
      421 aactcaacaa catccatttc cgatcgatca gtctgaattc actgctgcgt tacgggaatc
      481 tcgcatcgac ctcgcaaaga ttctcgaccc ttttggacat ccctatgaag tgatgtttcg
      541 gatgcagacg gtctacaccg acaaggtgaa gcttgaaagt agcgggcctt taggtgcgac
      601 gcaggttacc gcaacaccgg tcacccaaac gttgagagtg attagcctca acagcacggg
      661 ggctgatggc cagtcacaca caaaggatga ctttgaggtt gcaagtttta gcggagtgat
      721 ttctgaagaa gcggcgacga aagcggtaaa gactcaattg atcagttcca tcgtcatggc
      781 cgacaacgct ggggcgatcg ctggattcat caccgatccg aatggggccg ccattgccgg
      841 tgcacaagtg tcggcaactt ccgatttgaa atcattcgtt gcgtccagta ctgacaatgg
      901 aagctacatc atttctaacg ttgagcccgg tagctacacg atccaagctg aagcgccggg
      961 tttcaagaaa cacatcgtta caaatgttgc tgtaacccca tcgactgcga ccacagtcaa
     1021 tattgtcctg gaggttggag ccaccaccga aacagttacc gtgacttctt cagccccgac
     1081 aatcacaact cgccaaattg aggacctgcc aatcagcggc cgacaacttc aagcgctgaa
     1141 tccgaggtcc gttaacgtcg ttaccaagtc tggaactaat gaaccgtcct tcaccccacg
     1201 ccttcgggaa tactttcctg aaaccctact ctggcaaccc gaactcacaa ccgacaaaca
     1261 agggcgagct caccttgatt tcaaactcgc tgacaacatc actacctgga aactgtcagt
     1321 aattggttcg aatgaaaatg gtgaagttgg gaccgcccaa acagagatac gcgcatttca
     1381 gcccttcttt gctgaactcg acccgccgcg tgtattgacc gaaggcgacc ggatctcact
     1441 tccggtcgtc ttacgaaatt atctcgaacg gaaacagaca gtcgatctcg aaatccaacc
     1501 tgaaacgtgg ttcacgttgc tcgccgggaa tcgcaggcgg gctgacgtgc ccgcgggtga
     1561 ttcaagcagg cagacttttg atctacgcgc catctcttcg attgaaaatg gaaagcaacg
     1621 cgtaacagca attggttccg attcgagcga cgcaattgag aaagtagtaa cagtccatcc
     1681 agatggcgaa gaaaaaactg ataccaccag cgacattctt cagtcgacga cctcgttagc
     1741 cgtaaatatt ccggccgatg ttgtgcctgg ttctgtacat actgaattga agatctatcc
     1801 gaatctggca gcgcatgtct gggaaagtgt cgaaggaatc atgcagcgtc cgtacggctg
     1861 tgccgaacaa acgatttctt ccagttaccc gagtctgttg gttctgcaat tcatgaagga
     1921 gagcgacaag acttccccgc tcgcagcaag agctcgtcgg tatgttgaag ctggatatca
     1981 aaagctcctt ggttatcagt ctggggatgg tggtttcact tactgggggc gcggcgaacc
     2041 cgatatagcg ttgacagctt atgctttgaa atttcttcag gattcagcgc gcttaatttc
     2101 ggtcgataag tcggtcattg aaaaggccga atcgtggttg ctgaagaagc aacgattgga
     2161 cggaagctgg ccggcgtggc tttggagtaa caaggaagat ccgcgacgaa gcgcgatggt
     2221 tacggcgctt gtcgtgaggt ctctggttcc cacgctttcc gcaaacgaag acaccgcttt
     2281 caaaaatgca atgagtcgtg cgttggcgta cttgaacgaa cagagccgaa gcatcgatga
     2341 gcc
//
LOCUS       DATCGC010000882         1217 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_446116, whole genome shotgun sequence.
ACCESSION   DATCGC010000882 DATCGC010000000
VERSION     DATCGC010000882.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1217)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1217)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1217
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_446116"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..444)
                     /locus_tag="VIJ87_08500"
     CDS             complement(<1..444)
                     /locus_tag="VIJ87_08500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444491.1"
                     /translation="MPRASLLNVPYTGVPTVESNAPPTAWQNIKVSDEQFGSQVGAAL
                     KNFGGTLEQLGATFGAIEEKNKHELEQTKAREIDTNMYKEFTKLDTEYRLKGGEDAVN
                     GWDDNEKRREEIKANALKAAGGNKRIERMVGASAESHIRSSFGASW"
     gene            complement(454..969)
                     /locus_tag="VIJ87_08505"
     CDS             complement(454..969)
                     /locus_tag="VIJ87_08505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444492.1"
                     /translation="MAAAIGIIGGVVSAIGAMKQGQAQADAANYQAQVARNNEIIALQ
                     QANLSRQDGATKAMQQDLKAAQTLGTQKAVLGASGVDIESGSSREVIASQNELARLDA
                     LTVQSNAERKAWGFDVEATNQKAQSGLYKMQAQHAKEAGMLNAFSSLLGGFGKVAGKW
                     GSDSGGGSLLS"
     gene            complement(945..>1217)
                     /locus_tag="VIJ87_08510"
     CDS             complement(945..>1217)
                     /locus_tag="VIJ87_08510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444493.1"
                     /translation="LVEKHWVTFVRVSALFLEELLGQYDRLSVIAPLRSDISQRWLQY
                     IGFKQTGVTRMYGIKFKTYELTKEALSNEKLTWLRGDDGWQPLLAS"
BASE COUNT          268 a          385 c          227 g          337 t
ORIGIN      
        1 ccacgaagca ccaaacgagc tgcggatatg actttcagca cttgcgccaa ccattcgctc
       61 aatgcgctta ttcccgcccg ctgccttcag tgcattcgcc ttgatctcct ctcttctctt
      121 ctcgttatca tcccagccat taacagcatc ttccccgccc ttcagccgat actcagtatc
      181 taacttagta aactccttat acatattagt gtcgatctca cgagccttcg tttgttccag
      241 ctcatgttta ttcttctctt caatcgcccc gaaggtcgct ccaagctgct caagcgtccc
      301 accaaagttc ttgagcgcgg ccccgacttg ggagccaaac tgttcatcac ttaccttaat
      361 gttttgccat gctgttggag gcgcgttcga ctcaacagtc ggcacccccg tataaggtac
      421 attcaataaa gatgctcttg gcatttacgt ctcctaggag agcaagctcc caccacccga
      481 gtcactaccc cacttcccag caacctttcc gaagccacca agcaacgaag aaaaagcgtt
      541 cagcatcccc gcttctttcg cgtgttgggc ctgcatttta tagagtcctg attgggcttt
      601 ttggttcgtc gcttcaacat caaagcccca cgcctttctt tcagcgttcg attgtacagt
      661 aagagcatcc aatcgcgcca gttcattttg actcgctatc acttctctcg aggacccact
      721 ttcaatatca actccagagg ctcccaaaac cgccttttgc gtcccaagcg tctgcgctgc
      781 cttcaagtct tgttgcatcg ccttagtcgc accatcttgt ctcgacaggt tcgcctgttg
      841 cagtgcaata atctcgttgt tccgcgcgac ctgcgcttga tagttcgcag cgtccgcttg
      901 tgcttggcct tgtttcatag cgccaatggc gctaacaact ccgcctatga tgccaatagc
      961 ggctgccatc cgtcatctcc tctcaaccaa gtaagctttt cgttcgaaag cgcctctttc
     1021 gttaactcat aagtcttaaa ctttattcca tacatcctcg tcacaccagt ctgcttaaac
     1081 ccaatatact gaagccacct ttggcttata tcactccgaa gcggggcaat aacgcttagt
     1141 cgatcgtact gtccgagcaa ttcctcgaga aacaaagcac ttactcgaac gaaggtgacc
     1201 caatgcttct caactag
//
LOCUS       DATCGC010000883         1071 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_446136, whole genome shotgun sequence.
ACCESSION   DATCGC010000883 DATCGC010000000
VERSION     DATCGC010000883.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1071)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1071)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1071
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_446136"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1071
                     /locus_tag="VIJ87_08515"
     CDS             <1..>1071
                     /locus_tag="VIJ87_08515"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEY5444494.1"
                     /translation="LLRMATGHQSEAAIRADGAPWTKTFLAHPVPFKPGTHFLYNSPA
                     TYMLSAIVQKVTGMTVLDYLKPRLFEPLGIDTPTWVASPQGISAGAYGLSVRTEDIAR
                     FGQLYLQKGNWKGKQLIPSAWVEEATARQTSNGSSPNSDWDQGYGYQFWRSRHNTYRG
                     DGAFGQYCMVIPELDAVVAITSGVRDMQSVMNLVWTKLLPAMKSDHLPEDRAARQKLE
                     ARLNGLVVKLPLGQPSSSMGAKISGKWFEFPKNERGIQAISFDFSSSMPVLLARTTAG
                     LSKTPIGMGSWRKNPDDFTNGLGDFLSVPAHPLVAASGAWTADDTFNVKLVLYQTPFY
                     SSLVFKFDGDRLVFDAEHNVAF"
BASE COUNT          229 a          264 c          319 g          259 t
ORIGIN      
        1 atctcctgcg gatggcaacc gggcatcagt cagaggcggc gattcgagct gatggtgcgc
       61 cgtggaccaa aacgtttctg gcgcatcctg ttcctttcaa gccgggcact cacttccttt
      121 acaactctcc cgcgacgtac atgctctccg caatcgtgca gaaggtgacg ggtatgacag
      181 tcctggacta cctcaagccg aggttgtttg agccactggg catcgatact ccgacctggg
      241 tagcgagccc gcaagggatt tccgcgggtg cttatggatt gtctgtgaga actgaagaca
      301 tcgctcgctt tggtcagttg tacctgcaga agggcaactg gaaagggaag caactaattc
      361 cttcggcatg ggtagaggaa gcaacggcgc ggcagacttc gaatggttcg tcgccaaata
      421 gcgattggga tcagggctac ggttatcagt tctggcgttc gcgtcacaac acttatcgag
      481 gtgacggagc gtttggtcag tattgcatgg tgattccgga gctcgacgca gtggtagcga
      541 tcaccagtgg tgtacgcgac atgcagagtg tgatgaatct cgtgtggacc aaactcctgc
      601 cggccatgaa atcagatcac cttccggagg atcgcgctgc gagacagaag cttgaagcaa
      661 gattgaatgg attggtggtt aagctaccgc ttggacaacc gagctcgtcg atgggcgcaa
      721 aaatctccgg gaagtggttc gagtttccga aaaatgagcg cggtatccag gcgatttctt
      781 ttgactttag ctcgtcgatg ccggttctac tggcgcgcac gactgctgga ttgagtaaga
      841 cgccgatcgg aatgggatcg tggcgtaaga accctgacga ttttactaac ggcctcggag
      901 acttcttgag tgtcccggct catccgctcg tcgcagccag tggggcttgg accgccgatg
      961 acactttcaa cgtcaagctc gtgctttacc agacgccttt ctattcgtcg cttgtgttta
     1021 agtttgatgg tgatcggttg gtgtttgacg cagaacacaa tgtcgcgttt g
//
LOCUS       DATCGC010000884         1440 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_245814, whole genome shotgun sequence.
ACCESSION   DATCGC010000884 DATCGC010000000
VERSION     DATCGC010000884.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1440)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1440)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1440
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245814"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..339
                     /locus_tag="VIJ87_08520"
     CDS             <1..339
                     /locus_tag="VIJ87_08520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HEY5444495.1"
                     /translation="THVLIPIQSSYFALEGTDDLLETIEKVKARPNPNLELLGVLVTL
                     HDKRTTLAREVHEQIKNVFGPKLFNTVITKSVRLEESPAYKESIFSFAPNSSGAIEYG
                     KLCKEVMSRV"
     gene            332..1168
                     /locus_tag="VIJ87_08525"
     CDS             332..1168
                     /locus_tag="VIJ87_08525"
                     /inference="COORDINATES: protein motif:HMM:TIGR00180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HEY5444496.1"
                     /translation="MSKRGLPTGLQMRHDAHYVEELSQHRPQQVGRMIPLDKLDPNPE
                     QPRVDFGDLTELTASIAEKGVLEPLLVKPNRITGRWMIIAGERRFRSAQRAGLKEVPC
                     VEMEVDEGTIAEIALIENMQRKDLTVWEEADGLLALTERFGYTHDDVARKVGKSRTTV
                     TEAMAIARIPNEVREICREGDINAKSSLLQIVRQPDDETMLSLAKQIASKGLNRNDAR
                     EARRQEMGPRVVPDSKPYTFKYASPDKDFNLEIKFKVSAVPDADVALILRAVADEIDS
                     NE"
BASE COUNT          359 a          356 c          397 g          328 t
ORIGIN      
        1 acccacgtgt tgattccgat tcagtcatcg tactttgcgc tcgaaggcac agacgacctg
       61 ctggagacta tcgaaaaggt gaaggcgcgc ccgaatccga accttgaact gttaggagtg
      121 ctggtaacgt tacacgacaa gcggacaaca cttgctcgcg aagtacacga acagatcaaa
      181 aacgtcttcg gtcccaaact gtttaatacc gtgatcacca agagcgtccg gctggaggag
      241 tcgccggcct acaaggaatc gatttttagc tttgcaccaa actcctccgg tgcaatcgag
      301 tatggaaaac tttgtaaaga ggtaatgagc cgtgtctaag aggggattgc caactggctt
      361 acaaatgcgt catgacgcgc attacgtaga ggaactctcg caacaccgcc ctcagcaggt
      421 gggtcgcatg attcctctcg acaaactgga tccgaatccg gagcagccgc gtgtggactt
      481 tggcgatctc actgagttga ccgcttcgat cgcagagaaa ggcgtgttgg aaccgctcct
      541 cgtgaagcca aatcgcatca cgggtcgctg gatgattatc gcaggtgaac gtcgtttccg
      601 atcggcccaa cgcgccgggc taaaggaagt gccttgcgtt gagatggaag tcgacgaagg
      661 gaccattgca gagatcgcgc tgattgaaaa catgcagcgt aaggatctga ctgtttggga
      721 agaagctgat ggcttactcg cgctaactga gcgctttggt tacacacacg acgatgttgc
      781 tcgcaaggtt ggaaagagta gaacaactgt aactgaagct atggcgatcg ccaggattcc
      841 gaatgaagtc cgggaaatct gcagggaggg agacattaac gcaaagtctt cgctgttgca
      901 gattgtgcga caaccagatg acgaaacgat gctcagtttg gctaagcaga ttgcttctaa
      961 gggactcaat cgtaacgacg ctcgtgaggc gcgtcgacaa gagatgggac ctcgtgtggt
     1021 tccggactcg aaaccttaca ctttcaaata tgcatcgccc gacaaagatt tcaacctcga
     1081 gatcaagttc aaagtgtcag ctgttccgga tgcggatgta gccttgatct tgagggcagt
     1141 cgcggacgag atagatagta acgagtaggt cttaggtttt tggtcttcgg tcttggaact
     1201 taggattctg cgcagtgatc cagtcagtac cacaacgcgg tagcgtgtgg cccctgtagt
     1261 ggtgtcatcc gccgggccac acgctaccgc gttgtggtac tgactacatc tccacgcgga
     1321 cgccaggatc taggaccaag ccctcatttc tcacttggaa gccagcgttt tcttcttctc
     1381 agcagcagct cgcttttgaa ggccttttgc ccaacgctca aaagttggtt gcaaaggctt
//
LOCUS       DATCGC010000885         1400 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_146148, whole genome shotgun sequence.
ACCESSION   DATCGC010000885 DATCGC010000000
VERSION     DATCGC010000885.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1400)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1400)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1400
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146148"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..349
                     /locus_tag="VIJ87_08530"
     CDS             <1..349
                     /locus_tag="VIJ87_08530"
                     /inference="COORDINATES: protein motif:HMM:NF024834.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEY5444497.1"
                     /translation="VIACTETAPPTNSSTPTSAASPPKPVDELAASRANYQKNCEGCH
                     TETGEGGTVKVENKQIKVPSLKSDHAMKRTDEQLTKMITNGEEEMPSFKDKLKPEEIA
                     AMVKFVRKHFQGK"
     gene            504..580
                     /locus_tag="VIJ87_08535"
     tRNA            504..580
                     /locus_tag="VIJ87_08535"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:538..540,aa:Arg,seq:tcg)
     gene            873..>1400
                     /locus_tag="VIJ87_08540"
     CDS             873..>1400
                     /locus_tag="VIJ87_08540"
                     /inference="COORDINATES: protein motif:HMM:NF012703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginase family protein"
                     /protein_id="HEY5444498.1"
                     /translation="MTDAPAGIEDRAQLALIGFRYDENSSYMKGASDAPPQIRAALRS
                     EAWNLASENGTELESVFFDAGDVEPQPGGDMFSLIENSVSTLLGDGLAPISLGGDHSI
                     TYPIVRAFARKYPELSILHFDAHPDIYDNFQGNRLSHASPFARIMEENLVKRLVQVGV
                     RTATKHQREQIKRFKV"
BASE COUNT          371 a          362 c          345 g          322 t
ORIGIN      
        1 agttatcgcc tgcactgaga ctgcgccacc aacaaacagt tccacaccaa cctctgctgc
       61 gtcgccgccg aagcctgtgg atgaacttgc cgcctcgcgt gcgaactacc agaagaattg
      121 tgagggctgt cacaccgaaa ccggtgaagg cggaacggta aaagtggaaa acaaacagat
      181 caaggttcct tcacttaaat cagatcacgc catgaagaga acagacgagc aactgacaaa
      241 gatgattacc aacggcgaag aagaaatgcc gtcgtttaaa gacaaactca agcctgagga
      301 gatagctgcg atggtgaagt ttgtgcgaaa gcattttcag gggaagtaag gagttagagc
      361 tttgtgcttg gtgcttcgaa ctttgaattg ttcggtcgcc cttcaaggtg ttcagacaaa
      421 gcactaagta caaagatcta agcacaaaaa acaggctttc gccgctttac gatttggtct
      481 cgctacctta acatccccct cgtgcactcg tagctcagtt ggatagagcg cctgacttcg
      541 gatcaggagg tcgcaggttc gagccctgcc gagtgcacca agttacagat tcactttctc
      601 ggcatcctcg ccagccgttt agcaaacagc gaagtcatcc caacgcgaaa gacagagacg
      661 gacgccctct ctggcttaaa aagcgaacct ctcttcttct gatatttttc atccgtgttc
      721 agctgtggcc tcaacttagt tgagacatcg acaagacaga cgcatatcgg acatttgagc
      781 gttgcttgtg atcaccttgc tgacggttta tgctcgcggt gttcgtcaaa tatagccccc
      841 gctgaatttc aaacgcttcc aaaggaacac ccatgactga tgctcccgca ggcatcgaag
      901 accgcgcgca acttgccctg atcggttttc gatacgacga aaactcgtct tatatgaaag
      961 gcgcttctga cgcacctccg caaatcagag cagctttacg ctccgaagca tggaaccttg
     1021 cgagtgaaaa tggaaccgag ttggagtctg tgttcttcga tgctggtgac gtcgagccgc
     1081 aaccgggcgg cgacatgttt tcgttgatcg aaaattcagt atcaacattg ctcggcgatg
     1141 ggctggcgcc aatttcactg ggcggcgatc attcgattac ctatccaatc gtcagggcat
     1201 ttgctcggaa gtatccagaa ctaagcatcc tccacttcga cgctcatccg gacatctacg
     1261 acaatttcca gggcaatcgt ttgtcacatg ccagtccttt tgctcgaatc atggaagaga
     1321 acctggtgaa gcgattggtg caggtcgggg tgagaaccgc aactaaacat cagcgtgaac
     1381 agatcaaacg attcaaggtt
//
LOCUS       DATCGC010000886         1414 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_179931, whole genome shotgun sequence.
ACCESSION   DATCGC010000886 DATCGC010000000
VERSION     DATCGC010000886.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1414)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1414)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1414
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179931"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..735
                     /locus_tag="VIJ87_08545"
     CDS             <1..735
                     /locus_tag="VIJ87_08545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444499.1"
                     /translation="KFGSEIVRTRKPSLRETYQPGFLQPDLESVMDELARFPESDPPA
                     HPLTTMVTESIPWYEFGRLAVEQSQVTLRTPYMDNDLVKLMFQAPLQIRAAGNLQERY
                     VKEQTPELGALPTNLGRFISDNPIVAKAMYFWFRALFKVEYIYLFATPHWLTYIDRTL
                     ARLRLERILAGRQKWEGYRLWIKTHFADFIQETLLSPKAQYTNLFERTAVEQMIKRHI
                     AGTHNYLNEINKVLTTELIYSSLLRY"
     gene            842..>1414
                     /locus_tag="VIJ87_08550"
     CDS             842..>1414
                     /locus_tag="VIJ87_08550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444500.1"
                     /translation="MNVLIIKLGATGDVVRTTPLLRRLSGNITWLTDAKNTVVLDGLK
                     NDLRSFSWEERQKALDGCYDLVINLEDTLDTAQFLRTLRCQKIFGAYLDGNNTLRYTE
                     DSSRWFDLSLISSYGPREADRLKFLNRRTYQELIFAGLSLRFAGDRYLLPDAIETGLS
                     GDVGIAADSGHVWPMKKWAYYGELKEALDDT"
BASE COUNT          373 a          350 c          362 g          329 t
ORIGIN      
        1 aaatttggaa gcgagatcgt cagaactaga aagccgtctc tccgggagac ctatcaacca
       61 ggtttcctac aacctgattt agagtccgtt atggatgaat tggcacgctt cccagaaagc
      121 gacccgcccg cacatccttt aacaacaatg gttactgaga gcattccatg gtacgaattc
      181 ggaaggctcg cagtcgagca atcgcaggtg acattacgaa cgccgtacat ggataatgac
      241 ctggtcaagt tgatgtttca ggcccctttg cagattcgag ctgcaggcaa cctgcaggag
      301 cgctatgtga aagaacaaac tccagagcta ggcgctctgc cgacgaacct aggacggttc
      361 ataagcgata acccaattgt tgcaaaggcc atgtatttct ggttccgggc actgttcaag
      421 gttgaataca tttatctctt cgcgacgccg cactggctga cgtatattga tcgcacactg
      481 gcgcgattga gactggagcg cattcttgca gggcggcaaa aatgggaagg ctaccgcctt
      541 tggatcaaga ctcattttgc cgacttcatt caggagactc tgttgagtcc aaaagcgcaa
      601 tatacgaatt tatttgagcg gacggcggtt gagcaaatga tcaagcgcca tattgcgggt
      661 acccacaatt acctgaacga gatcaacaag gtacttacaa ccgagctgat ttactcttcg
      721 ctgctccgtt attaaattgc cctcacctat aagccaagta taggcgaaaa ggcaatggcg
      781 agttcgcagc tctctaacga atgtggagct ggcctgaaga acgcatgtct tcattttacc
      841 aatgaacgta ctaatcatca agcttggcgc gaccggagac gtggtaagaa caactccttt
      901 gctcaggcgt ctgagcggga acataacatg gttgacggac gctaaaaaca ctgttgttct
      961 cgatggcttg aagaatgatc ttcggtcatt ctcctgggaa gagcgacaga aagcgttaga
     1021 tggctgttat gacctcgtta ttaacctgga agatacactg gatactgcac aatttctcag
     1081 aacgctgcgc tgccaaaaaa tcttcggtgc ctacctcgac gggaacaaca cattgcgtta
     1141 tacagaggat tcaagccgct ggtttgacct aagcctcatc agttcatatg gcccaaggga
     1201 ggctgatcgg ctcaaatttc tgaaccggcg cacgtatcaa gagctaatct tcgcaggctt
     1261 gagcctccgc tttgctggcg atcggtacct gcttccggac gcgatcgaaa cgggcctctc
     1321 aggcgacgtc gggatagctg ccgactcagg ccatgtctgg ccgatgaaga aatgggctta
     1381 ctacggggag ttgaaggagg cgctcgacga caca
//
LOCUS       DATCGC010000887         1054 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_81702, whole genome shotgun sequence.
ACCESSION   DATCGC010000887 DATCGC010000000
VERSION     DATCGC010000887.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1054)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1054
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_81702"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..202
                     /locus_tag="VIJ87_08555"
     CDS             <1..202
                     /locus_tag="VIJ87_08555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444501.1"
                     /translation="TCIPILRLPTALRQEEDRLAQEEATSLNEIHRATESSTGDEVFL
                     PYAFVQRETCGTGEKSETGEKI"
     gene            370..446
                     /locus_tag="VIJ87_08560"
     tRNA            370..446
                     /locus_tag="VIJ87_08560"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:404..406,aa:Arg,seq:ccg)
     gene            485..560
                     /locus_tag="VIJ87_08565"
     tRNA            485..560
                     /locus_tag="VIJ87_08565"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:518..520,aa:Lys,seq:ctt)
     gene            complement(546..>1054)
                     /locus_tag="VIJ87_08570"
     CDS             complement(546..>1054)
                     /locus_tag="VIJ87_08570"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEY5444502.1"
                     /translation="LGPRLSEILNLTWDRVDMHRGFLKLRSVDTKTREPRQVPLTPVV
                     LGALRDLSKVRSLKCPYVFQFEGKPIKRVKRAFHTAVRTAGIQDLRFHDLRHCAATNL
                     RRAGIDTVTAMKIVGHKSEKMHRRYNSVSESDLSAAARKLDSYLSNTCHQFSGNRFYN
                     CLIIWWAV"
BASE COUNT          241 a          289 c          280 g          244 t
ORIGIN      
        1 aacctgtatt ccgatcctgc gacttcccac cgccctccga caagaagaag atcgcttagc
       61 gcaggaagaa gccacttccc tcaatgagat ccatagagcc acagaatcat cgaccggcga
      121 cgaggtgttc ctaccctatg cattcgtaca gcgcgagact tgcgggacag gcgagaaaag
      181 cgagactggt gagaaaatct gagggctgaa aatcgaggat ggaagtttca ttttcacgag
      241 tcgcgcctat cgcacttttc tcgcctgtct cgcttgagcc tgtccgctgc tacagctcgc
      301 ggatatgact caggcaggct ggacagaggc taaaatcctg tgctactgtt acttcccttg
      361 gttgcgggag cgcctgtagc tcagctggat agagcatcag cctccggagc tgagggccac
      421 aggttcaaat cctgtcaggc gcaccaagca aaaaaatacg acctcatcct tcctgtttca
      481 cggtgggccg ttagctcagt tggtagagca gctgactctt aatcagcggg ccgtaggttc
      541 gacccctaca cggcccacca aataatcaag cagttataga accggttgcc gctgaattgg
      601 tggcaggtgt tagaaaggta ggaatctaac ttcctcgccg ctgcggaaag gtcactttcc
      661 gacacagagt tgtatcgtcg gtgcatcttc tccgatttgt gacccacaat cttcattgcc
      721 gtaaccgtat caatcccagc ccgtcgtagg ttcgttgccg cacagtgtcg caggtcgtga
      781 aagcgtaagt cttgaatgcc cgctgttcgc accgctgtgt ggaatgctcg tttgactctc
      841 ttaatcggct ttccctcgaa ctgaaacaca taggggcatt tgaggcttcg caccttggag
      901 aggtcccgta atgccccgag tacaacgggc gtcaatggta cttggcgcgg ctccctagtc
      961 ttagtgtcca ctgaacggag cttgaggaac ccacgatgca tgtctacacg atcccaggtg
     1021 aggttgagga tttcactcag acgtgggcca aggt
//
LOCUS       DATCGC010000888         1161 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_315246, whole genome shotgun sequence.
ACCESSION   DATCGC010000888 DATCGC010000000
VERSION     DATCGC010000888.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1161)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1161)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1161
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_315246"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..294
                     /locus_tag="VIJ87_08575"
     CDS             <1..294
                     /locus_tag="VIJ87_08575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444503.1"
                     /translation="KQAAVLLYGHGHAGTDMSVINNILFKEPFIVTSVGASGGFEPNG
                     RPSVYKRSLELIENEQIDVAALITHKYKSFDHVEPALNGGMQAEEYVKGVVVL"
     gene            407..1135
                     /locus_tag="VIJ87_08580"
     CDS             407..1135
                     /locus_tag="VIJ87_08580"
                     /inference="COORDINATES: protein motif:HMM:NF014774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEY5444504.1"
                     /translation="MRVSLFVTCLVDQLWSSVGASSVEVLRRVGCEVEFDDRQTCCAQ
                     PAFNTGYRQEAREVAKRFISIYEDSKVDAIVSPSGSCTAMVHHYPELFAEDAEWLKRA
                     QAIAERTHELSSFLVRVLKVEDVGASWTGRLTWHDACHGLRDLNLKSEPRSLIKNVRG
                     AEFVELDNADSCCGFGGTFSVKYPEISLAILDQKIEAIERAEVKAVVSGDASCLMQIG
                     GRLSRKGSQVKVMHIAELLASQEA"
BASE COUNT          276 a          245 c          333 g          307 t
ORIGIN      
        1 aagcaagcag ccgttttgct ttatggtcac ggtcacgcgg gaactgatat gagcgtgatt
       61 aacaacattc tcttcaaaga gccgttcata gttacttccg ttggcgcttc aggcgggttt
      121 gaacctaatg gccgcccgtc agtctacaag cgttcactgg aattgattga gaacgaacaa
      181 atagacgttg cagccttgat cacacataag tacaaatcgt tcgaccacgt tgaaccggct
      241 ctcaatggcg ggatgcaggc ggaagagtat gtgaagggag tggtggtgtt gtgatttgag
      301 attgtccgat atgcgtctgt cttgtcgctg actctcgaaa gaagcctttc actacactaa
      361 cgacaagcta aagcatatcg gacaatctgc aatcaacctc aatttgatgc gcgtttcact
      421 attcgtcacc tgtctcgtcg atcaactctg gagcagcgtt ggtgcaagca gtgttgaagt
      481 tcttagacgg gttggttgcg aagttgagtt tgacgatcgg cagacatgtt gtgcgcagcc
      541 cgcgttcaat actggttacc ggcaggaagc gcgcgaagta gccaagcggt ttattagtat
      601 ctacgaagac agcaaggtcg atgcgattgt cagtccttct ggatcttgca ccgcgatggt
      661 gcatcactat ccggagcttt tcgcagagga tgctgaatgg ttgaaacgtg ctcaagccat
      721 tgctgaacga actcatgaat tgagttcgtt cctggtccgt gtgttgaagg ttgaagacgt
      781 tggcgcgagt tggactggcc gcttgacctg gcacgatgca tgtcatggtt tgcgggacct
      841 aaatctaaag agtgaaccgc ggtctttgat aaagaatgta cgcggtgccg agtttgttga
      901 gctggataac gctgattcgt gttgtggttt tggcggtacg ttttcagtta agtatccgga
      961 aatatcgcta gcgatactcg accaaaagat cgaagcgatt gagcgagctg aagtaaaggc
     1021 ggtggtctcg ggcgatgcga gttgcttaat gcagataggc ggtcgcttgt cccgaaaggg
     1081 atcgcaagtg aaagtgatgc acattgccga gttgttagcg tcgcaggaag cttgatgtcc
     1141 gataagcttt agcttgtcgc t
//
LOCUS       DATCGC010000889         1072 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_278440, whole genome shotgun sequence.
ACCESSION   DATCGC010000889 DATCGC010000000
VERSION     DATCGC010000889.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1072)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1072)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1072
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278440"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(367..>1072)
                     /locus_tag="VIJ87_08585"
     CDS             complement(367..>1072)
                     /locus_tag="VIJ87_08585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444505.1"
                     /translation="ESAQASEPKPSDPVNVEIVKGKNGVVTRTTRRDGSVDVKRVNKK
                     GDVTIELDDIYDMAAAVRDATRRAADTRPNSQTSVVWISDGIAPIFFEDREATEQILI
                     RDNVIFNSLTVELRTLFKFLMPIGKPVAGWMGVSLYGSAKYLADRTGGEAVKVGRAKD
                     YGAGLSRIIGNLTARYSLGFALAEDEVDDGNMHGLEVRVKAKDDKGKTRKLLVSSRQG
                     YYMSSIGPKDTAAKAQ"
BASE COUNT          247 a          276 c          279 g          270 t
ORIGIN      
        1 cgactagttt cccgtctggc gacatgtgcg gatcacttag aaactcgaag gcgaagtagt
       61 cttcaggagt gatgccgcga agtgcttgtg agaaagctga tgctgtaaag gtgagacaaa
      121 gaacaagaat cgagaatcgc gttgcaagct tcatttgttt ttcggattgc ctaaacaggt
      181 tagctaagac gaggcttatg atacatgcga aacgcggatg ggaggaatat gaaaggcggg
      241 acaaacaacg agtgcgccta tttggagtgc ggtggcctag cgccgctttg gtgagagctc
      301 aggctgacag atattcatta ccaaagcggt gccaggccac agcactccaa ataggctttg
      361 aatggtttac tgtgctttag cggctgtgtc tttcggaccg atgctcgaca tgtaataacc
      421 ctggcgtgaa ctcactaaca gtttgcgtgt ctttcccttg tcgtctttcg ctttcacgcg
      481 tacttccaag ccgtgcatgt ttccatcgtc cacttcgtct tccgcgagtg cgaaaccgag
      541 actataacga gcggtcaggt ttccaataat ccgcgaaaga ccggcgccgt aatctttcgc
      601 ccgaccgact tttaccgctt cgccccccgt tcgatcggca aggtacttcg cgctgccgta
      661 caaactgact cccatccaac cggcaaccgg tttaccgatc ggcatcaaga acttaaacag
      721 cgtgcgcagt tcaacagtaa gtgagttgaa aatgacgttg tcgcgaatca atatctgctc
      781 ggttgcttct cggtcttcaa aaaatatcgg ggcaatgccg tctgagatcc aaacgactga
      841 agtttgagag ttcggtctcg tatccgctgc gcggcgcgtg gcgtcgcgaa cggcggcagc
      901 catgtcgtaa atatcgtcga gctcgatagt gacgtcaccc ttcttgttaa ctcgcttgac
      961 gtcgacacta ccatctcgcc gagttgtgcg cgtgacgaca ccattcttac ctttaacgat
     1021 ttcaacgttc accggatcgc ttggtttagg ctcggatgct tgtgccgatt cg
//
LOCUS       DATCGC010000890         1167 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_81714, whole genome shotgun sequence.
ACCESSION   DATCGC010000890 DATCGC010000000
VERSION     DATCGC010000890.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1167)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1167)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1167
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_81714"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1064)
                     /locus_tag="VIJ87_08590"
     CDS             complement(<1..1064)
                     /locus_tag="VIJ87_08590"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEY5444506.1"
                     /translation="MLADKWKTILCLVIFLLSLSVRGLTAYFIHTHLSDPAWFQAGTY
                     ELFDRKAQDILDHKASAFWIDDPSHTESAVYPPGYPLWIAGIYKLTGERSPSSVQKIQ
                     WILDALSVLLVVGIGVTAFDYRVGIVSGLLASLSPLLALSGAVPLADAPTSWLVLGAV
                     WLLAIAAQRQKLVPALLAGLLVGLSCWLRANALLLPVFWIGALLLWKVSWRSRLLLSG
                     GVVIGMAVLVTPLLIRNAVAFQVFTPTGLGVGTNLWEGIGETDRAAEFGAVYGDQKLL
                     EKERLELGVSPEATFNLYYPDGVKRDRERARRAMSIIRAHPVWYAGVMLRRMVGVLKF
                     AGTPARYYGSSGVNVTSSKC"
BASE COUNT          321 a          338 c          282 g          226 t
ORIGIN      
        1 aagcacttac tactcgtcac gtttacacca gagcttccgt aataacgagc gggggttccg
       61 gcgaacttca acacacccac cattcgtctc aacatcacac ccgcgtacca aactggatgt
      121 gcgcggataa tggacatcgc cctgcgcgcg cgttcacgat ctcgtttcac tccatcaggg
      181 tagtagagat tgaaagtggc ctcgggcgaa accccgagtt ccagacgctc cttttcgagt
      241 aacttctgat cgccgtagac ggcgccaaac tccgctgctc gatcggtttc gccaatccct
      301 tcccaaagat tcgttcccac gcccagcccg gttggtgtga acacctgaaa agcaacggcg
      361 tttcgaatca acaacggagt tacaagaacc gccatgccga taacgactcc gccactcaac
      421 aacagtcgac ttcgccagga caccttccag agcaacaaag ctccgatcca aaacaccggt
      481 aacaacaacg cgttcgctcg caaccaacac gacaaaccaa ctaggagtcc agccaacagt
      541 gcgggaacta gcttttgtct ttgtgcagca atcgccaaaa gccagactgc gccaagcacc
      601 aaccaactcg ttggcgcatc ggcaagcggt actgctcccg acaaagccag gagtggtgat
      661 aacgacgcga gcaagccgga cacaatgccg acgcgataat cgaatgcggt gacgccgatt
      721 cccacaacca ggaggacaga caacgcgtcg agaatccact gaattttttg aacactggag
      781 ggcgaacgtt cacctgtcaa tttgtaaatg ccagcgatcc acaatggata tccgggtggg
      841 tacacggccg actcagtgtg acttggatcg tcaatccaaa acgccgaggc cttgtgatcg
      901 agaatgtcct gggctttgcg atcgaagagt tcgtaagtgc ctgcttgaaa ccaggcagga
      961 tcagagagat gagtgtgaat gaagtaagca gtaaggcctc tcacagaaag cgagagcagg
     1021 aagatgacta gacaaagaat cgttttccat ttgtcagcta gcattagctc tcaactaatc
     1081 gaactacgct gacctcttag ctattctcgt ctgcaccaac cggggaatgg ccggaacttt
     1141 ctccgctaag gagccataag catcgag
//
LOCUS       DATCGC010000891         1205 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_411263, whole genome shotgun sequence.
ACCESSION   DATCGC010000891 DATCGC010000000
VERSION     DATCGC010000891.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1205)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1205)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1205
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_411263"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1205
                     /gene="argS"
                     /locus_tag="VIJ87_08595"
     CDS             <1..>1205
                     /gene="argS"
                     /locus_tag="VIJ87_08595"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: protein motif:HMM:NF012952.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HEY5444507.1"
                     /translation="KLKTAIEAMPEVSQVEIAGPGYINVFFNRAKLLHLFATKTEAVA
                     GDVTARPKKMVEHTSINPNKAAHIGHVRNAVLGDTFVRILKAAGDPVEVQNYIDNTGV
                     QVADVVVGFMQIENKNLEQIKELDASLSGNYTFDYYCWDLYTKVGLFYRNDNPSGEMD
                     PERTKVRTEVLHALEEGNNEIAKLADYVATRNVECIVDTMERLGIRYDLLARESDILH
                     LHFWDRAFELMKTAGVLRFESEGKHAGCWVMPFESHTGTDDHESDKIIVRSNGTVTYT
                     GKDIAYQLWKLGKLGLDFHYNIFRQYPGEHPLWVTTTDDSAEAKTQATRPHFGGGDTV
                     YNVIDSRQSYPQEIVAQGVAAVVPEVGREASVHFSYEMVALSPAACDELGIELTAEDR
                     ARPYIEMSGR"
BASE COUNT          304 a          293 c          327 g          281 t
ORIGIN      
        1 aaactaaaga ccgcgatcga agcgatgccc gaagtttcgc aagtggaaat tgctggcccg
       61 ggttacatca atgtcttctt taatcgagcg aagctgcttc atctatttgc gaccaaaacc
      121 gaggccgtcg ctggtgatgt aactgcacgc ccgaagaaga tggttgagca caccagcatt
      181 aatccgaata aagccgccca tatcggtcac gttcgtaacg cagttttggg cgacactttc
      241 gttcgcattt tgaaagccgc gggtgatccg gttgaagttc aaaactacat cgacaatacc
      301 ggcgtgcagg ttgctgacgt tgtcgtcggt tttatgcaaa ttgaaaacaa gaacctggag
      361 cagataaaag aactcgacgc ttccctgtct ggcaattaca cgttcgatta ttactgctgg
      421 gatctgtaca caaaggtcgg cctgttctac agaaacgaca atccgtccgg cgagatggat
      481 ccggaacgaa cgaaagttcg gaccgaagtg ctccacgctc tcgaagaagg taacaacgaa
      541 attgcgaaac ttgcagatta cgtcgccacg cgtaatgtcg agtgcatcgt cgacacgatg
      601 gaacggctcg ggattcgtta cgatttgctc gcacgcgagt cagacattct tcacttgcac
      661 ttttgggatc gcgcgtttga gttgatgaag actgccggcg tcctgaggtt tgagagtgaa
      721 ggcaaacatg cgggttgctg ggtgatgcct tttgaatcgc acacgggcac cgatgatcac
      781 gaatcagaca aaatcatcgt ccgttcaaac gggacggtca cttacaccgg taaagacatt
      841 gcctaccaac tctggaagct gggaaagtta gggctggatt ttcactacaa catctttcgc
      901 cagtatccag gtgagcatcc gctttgggtg accactactg atgattccgc agaagcgaaa
      961 actcaagcca cgcgtccaca ctttggcggc ggcgatactg tctacaacgt catcgattcg
     1021 cggcaatcat atccgcagga gatcgtggcc cagggagttg cggcagttgt tcctgaagtt
     1081 ggtcgagaag ctagtgtcca cttcagctac gaaatggtgg ccttgtcgcc ggcggcgtgt
     1141 gatgagttgg gaattgaatt gactgcggag gatcgtgcac gcccttacat tgaaatgagt
     1201 ggccg
//
LOCUS       DATCGC010000892         1759 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_278483, whole genome shotgun sequence.
ACCESSION   DATCGC010000892 DATCGC010000000
VERSION     DATCGC010000892.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1759)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1759)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1759
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278483"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(10..954)
                     /locus_tag="VIJ87_08600"
     CDS             complement(10..954)
                     /locus_tag="VIJ87_08600"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase family protein"
                     /protein_id="HEY5444508.1"
                     /translation="MRFPLSVPTNKPFDAVGFGLNAVDHLIVVPRYPDFDTKTRLLEH
                     KLSAGGQTATAMVALTRLGLKTAYAGRFGSDAEGHFGLATLKDEGVNTEHAEMVAGSA
                     TQIAFITIEEQSGERTIVWDRDDRLAYKPEEAPSDFGSQGRVLHLDAHDPPACVRVAR
                     DAKQAGTIISADIDNVYEGLPELLPYIDLLLGSKEFPGRVTGIRDGRTALVELQNRFG
                     SVMTGMTLGDQGVIIYCNGRYLESPAFAAPGGCRDTTGAGDAFRGGFLYGLLTGEDIE
                     TSMKFGNAVAAMKCSKLGARPGLPTKQQLEEFLMSDML"
     gene            1175..>1759
                     /locus_tag="VIJ87_08605"
     CDS             1175..>1759
                     /locus_tag="VIJ87_08605"
                     /inference="COORDINATES: protein motif:HMM:NF013691.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HEY5444509.1"
                     /translation="MSLEEKLNELPSSPGVYLHKDAAGKVIYVGKAKNLRSRVRSYFR
                     AARPFDRKTDALVDQIADLEFIITDNEVEALILEASLVKQHKPRYNIKLQDDKSYPHL
                     KLTVNEPFPKVVITRRIQRDGALYFGPFLPASLARKTIDVINRTFQLRTCDIEIDGKA
                     PRPCLEYHIKRCLGPCVKGLCTAEQYQEAVRDVRL"
BASE COUNT          408 a          506 c          426 g          419 t
ORIGIN      
        1 aacgacaagc taaagcatat cggacattag aaactcttcc agttgctgtt tagttggcag
       61 accaggcctt gctcccagct ttgaacactt cattgctgcc actgcatttc caaacttcat
      121 gctcgtttca atgtcttcac cggttaacaa cccgtacaag aatccaccgc gaaacgcgtc
      181 gcctgcaccc gttgtatctc tgcaacctcc aggcgctgca aaggctggtg attcaaggta
      241 acgtccgttg caataaatta ttacgccttg atcgcccaat gtcattccag tcatcactga
      301 gccaaagcgg ttttgtaact caactaaagc ggtgcgccca tctctgattc cggtgacacg
      361 acccggaaac tctttcgacc ctagtaacag atcgatgtac ggcagcaact ccggcagccc
      421 ttcgtaaaca ttgtcgatgt cggctgagat gattgttcca gcctgcttcg catcccgtgc
      481 aacacgtaca cacgctggcg gatcgtgagc gtcaagatgc aggacgcggc cttgtgatcc
      541 gaagtcgctt ggtgcctctt caggtttgta ggcaagacga tcatcgcggt cccaaacaat
      601 ggtgcgctct ccgctttgtt cctcgatagt gatgaaggca atctgcgtcg ccgagcccgc
      661 caccatttcg gcgtgttcgg tattcacgcc ttcgtccttc agtgttgcca gcccaaaatg
      721 gccttcggcg tcagaaccga agcgacctgc gtaggctgtc ttcaacccga gacgtgtcaa
      781 cgcaaccatg gctgtcgctg tttgaccgcc ggccgatagt ttgtgttcaa gcagacgagt
      841 ctttgtgtca aagtccggat acctgggaac gacgatcaag tgatcgactg cattgagtcc
      901 gaagccgaca gcatcgaaag gcttgttggt aggaacagat aatgggaagc gcatcgcttt
      961 tgaataagct ttgttgtgtt gctacgtcaa cacattcgct tggagtgcgg tggcctggca
     1021 ccgcttttgt acagtcgatc gttaatttaa gaggctcttt cccaaagcgg tgccgggcca
     1081 ccgcactcca agaaggcgcc cctttccagc ttgttcttgt ctggtcggtt cttcaaagtt
     1141 gcaactagcc cctcatgatc tagaatcact atcagtgtct ctggaagaaa aactcaacga
     1201 gctgccatcg tcgcccggcg tctatctaca caaagacgcc gcgggcaagg tgatctatgt
     1261 cggcaaggcg aagaacctcc gcagtcgtgt tcgttcatac tttcgcgcag cgcgtccatt
     1321 cgatcgcaaa acagacgcac tcgtcgacca gatcgctgat ctcgaattca tcattaccga
     1381 caacgaggtc gaggctctga ttcttgaagc ttcactcgtc aaacagcaca agcctcgcta
     1441 caacatcaaa ctccaggacg acaagtcgta cccgcatctg aagctcaccg ttaacgaacc
     1501 gttcccgaaa gttgtcatca ctcgacgcat ccaacgcgat ggtgcgctct acttcggacc
     1561 gtttctacca gcgagtcttg ctcgtaagac aatcgatgtc atcaatcgca cctttcaact
     1621 tcgcacctgc gatatcgaga tcgatggtaa ggcaccgcgc ccctgtttgg agtatcacat
     1681 caaacggtgc ctgggaccgt gcgtaaaagg gctttgcaca gcggagcaat accaggaagc
     1741 agtgcgcgac gttcggctc
//
LOCUS       DATCGC010000893         1765 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_411304, whole genome shotgun sequence.
ACCESSION   DATCGC010000893 DATCGC010000000
VERSION     DATCGC010000893.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1765)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1765)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1765
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_411304"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..845)
                     /locus_tag="VIJ87_08610"
     CDS             complement(<1..845)
                     /locus_tag="VIJ87_08610"
                     /inference="COORDINATES: protein motif:HMM:NF014896.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444510.1"
                     /translation="MRSYSLTRVVVCLSLMGILVGISISFGAHAQNSTTGASQQMMKK
                     NSYPVARKGDQVDDYHGVKVADPYRWLEDLDSDETRSWVDAENKLSFGFLEGIPARAA
                     IKERITKLWNYEKYGVPFKEGNRYFYSRNSGLQNQSVLYTVTSLDGQPKLVLDPNTLS
                     SDGTVALSGMQVSNGGKLLAYSLSASGSDWQEWKVRDVETGQDLSDDLKWVKFSGVSW
                     TRDNRGFYYSRYDEPKSDSLKATNYFQKVYFHKLGTPQSEDVLVYERPDQKDWLFGAQ
                     VTEDG"
     gene            1248..>1765
                     /locus_tag="VIJ87_08615"
     CDS             1248..>1765
                     /locus_tag="VIJ87_08615"
                     /inference="COORDINATES: protein motif:HMM:NF016300.4"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HEY5444511.1"
                     /translation="MSDERSGSFLGSAAIAVAIIIATIIGGWFFVKGKRGDQTITVTG
                     SARKSIKSDRVVWKSAITYQSPVLADAYRSLSEAVPRVKSYLVGKGIQENQITISSIS
                     SQTLHGRSSDGGETSEITGYSLRQELEVNSNEVDKISKIAREATELINQGILIESMPP
                     EYYYTQIGGLKI"
BASE COUNT          470 a          463 c          406 g          426 t
ORIGIN      
        1 tcaccatctt ccgtaacctg agcaccgaag agccaatctt tctgatctgg acgctcgtaa
       61 acaagaacgt cttcgctttg tggtgtaccg agtttgtgga agtaaacttt ttggaagtaa
      121 ttcgtcgctt tcagagaatc actcttcggt tcgtcatacc gactgtaata gaaccccctg
      181 ttgtcgcgcg tccaggaaac acctgagaac ttaacccact tgaggtcgtc agaaaggtcc
      241 tgcccagtct cgacgtcacg aactttccat tcctgccagt cagagcctga cgccgacaaa
      301 ctgtacgcca gcagcttccc gccattgcta acctgcatgc ctgacagagc aacggtcccg
      361 tcactcgaca aggtattggg atccaaaacc aacttcggct gcccatcgag ggaagtcacc
      421 gtgtagagga cactctgatt ctgcaatccg ctattgcgag aatagaaata gcggttccct
      481 tccttgaaag gcacgccgta cttttcatag ttccagagtt ttgtaatgcg ctccttgata
      541 gcggcgcgag cgggaatgcc ctcaagaaaa ccgaaactaa gtttgttttc agcatcgacc
      601 caacttcgcg tttcatcgga atcgagatcc tccagccatc tatatggatc agcgactttc
      661 acgccgtgat agtcgtcgac ctgatctccc tttcgagcta ctggataact attctttttc
      721 atcatctgct gcgaggcacc tgtagttgaa ttctgcgcat gagcaccaaa gctgattgag
      781 attccgacaa gaatgcccat caaggacaga cagacgacta cacgagtcag tgaataagaa
      841 cgcatgacga agctcccttc aagatttttg gagacgcaac gcaggttggt tctaaaacgg
      901 gaaacggctg gcagtataca gaggaaaaac gaccggaaca aaacagatga ttggccattg
      961 gtcattttca attcatcagt tttcattttt cgaggacgaa gttccctggt tatcaccagg
     1021 aaaggactat ccgcgagttc aattagtcgc ttccgtttcg acaaatggaa actgataaat
     1081 ggaaaatgac caatgaccaa tgatcttttc aaccccatca cccgtcgagc ccgcagcaac
     1141 taccgtagct cccccagtct ctaccaatgg taaatactgt tggtccacag tccgaaaccg
     1201 tgtattttgc acgccaactt agttggttaa aggagacact tcaacccatg agtgacgaac
     1261 gttccggaag ttttctgggc agcgcggcta tcgcagtcgc cattatcatt gccaccatca
     1321 taggcggctg gttcttcgta aaaggaaaac gaggcgacca gacaatcacc gtcaccggct
     1381 cggcacgcaa gagcattaag tcggatcgag tagtttggaa gtcggcgatc acctatcaat
     1441 cgccggtatt ggctgatgct tatcgatcgc tttccgaagc agtgccgcgt gtcaagtcgt
     1501 acctcgttgg caaaggcatt caggaaaacc agatcaccat ctcgtctatt tcttctcaga
     1561 ctctccatgg acgtagtagc gatggcggtg agacatcaga aatcactggc tactctttgc
     1621 gccaggagtt ggaagtcaat tccaacgagg tagataagat ctcgaagatt gctcgcgaag
     1681 cgacagaact catcaatcag ggaatcctga tcgaatcgat gccgcctgag tattactaca
     1741 ctcaaatcgg cggacttaag atcga
//
LOCUS       DATCGC010000894         1860 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_146253, whole genome shotgun sequence.
ACCESSION   DATCGC010000894 DATCGC010000000
VERSION     DATCGC010000894.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1860)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1860)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1860
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146253"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1860)
                     /locus_tag="VIJ87_08620"
     CDS             complement(<1..>1860)
                     /locus_tag="VIJ87_08620"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="chemotaxis protein CheA"
                     /protein_id="HEY5444512.1"
                     /translation="DLLGELSLSDIFRAEVESQAASMTEDLLALERDPAATHRLRELM
                     RGAHSLKGAARIVNRDPAVRVAHAMEDCLVAAQRSDVGLSQGRIDDLLGGIDLLTQIA
                     NLPDDAVAKWESDHHDEIALFVKSLSSLNEEVVIPKGPAIENTVTREPRTTTRDLRIG
                     VDNLNRLLGLAGESVVASHCLDAFATDLSRFKRMQDDLAYGLQGLRNSLGFADLNERT
                     RGQLLDLQKKVTVCQDFFSRHLGEFELFERRYYHLATRSYQEVLDCRMRPFSDGTRGF
                     ARMVRDAARRLGKKINLEIVGQTTPVDSDILKSLETSLGHLLRNAVDHGIETPADRRR
                     IGKSETGTIRLETRHRAGMLLIEVTDDGHGIDAESLRRVVIEKGLTTDEVAVKLSEPE
                     LLEFVFLPGFTLKETVTEISGRGVGLDAVQTMIRHVGGTVRVTSQPAQGTKFQLQLPL
                     TLSVLRTLLVEIAGEPYAFPVTRINRVLKLPRSRIESIEGREYFTYNHQQIGLVAARQ
                     VLGLSARSIRDGELPVVIIGEKNARYGVVVDKFLGERELVIRALDPRLGKVKDINGAA
                     LMADQSPVLIIDVEDLARSIENLASGGRLAHVSRNLGSKVGPIQKRVLVADDSL"
BASE COUNT          422 a          525 c          470 g          443 t
ORIGIN      
        1 agtgagtcgt cagccaccag aacgcgcttc tggattggtc cgacctttga cccaaggttc
       61 cgtgacacgt gcgccagtct accccccgag gcgaggtttt caatcgaacg cgccagatct
      121 tcgacgtcaa tgattaggac cggagattga tcggccatca gggctgctcc attgatgtct
      181 tttacttttc caagccgtgg atccagggcg cgaataacta attctcgttc gcccagaaat
      241 ttgtccacca ctactccata acgcgcgttc ttttcaccaa taataacaac tggcagctcc
      301 ccgtcgcgga tggaacgggc tgacaatcct aagacctggc gcgctgcaac caatcctatc
      361 tgctgatgat tgtaggtgaa atattcccgc ccttcaatcg attcaattct actccgcggg
      421 agtttcagca cgcggttgat gcgagttact ggaaacgcgt atggctctcc cgcgatttca
      481 accaacaatg tacgcaacac ggatagtgtc aggggaagtt gaagctgaaa cttcgtgcct
      541 tgcgctggct gcgaagtaac gcgcacggtt ccacctacgt gcctgatcat tgtctgaacg
      601 gcatcgaggc cgacgccgcg tccggaaatt tcagtgacgg tttctttcag cgtaaagccc
      661 ggcagaaaga cgaactccaa aagctccggt tcggacagct taactgcaac ttcgtcggtc
      721 gttaggcctt tttcgattac aacccgacgc agactttccg catcgattcc gtggccgtcg
      781 tcagtaactt caatgagaag catgcctgcg cgatgtcgag tttcgagtcg aattgttcct
      841 gtttctgatt tcccaatccg acgacgatcg gctggcgtct cgattccgtg atctacagcg
      901 ttccgcaaca gatggccaag tgaagtctca aggctcttga gaatgtcact atcaacgggt
      961 gttgtttgac ccacgatctc aaggttaatc tttttaccca gacgtcgcgc agcgtctcgg
     1021 accatgcgcg caaaaccgcg agtgccatcg ctgaagggcc gcattcgaca atcgagaact
     1081 tcttggtagg agcgagttgc aagatgatag tatcgtcgct cgaatagttc gaactcgccc
     1141 aggtgacgcg agaagaagtc ctgacacacg gttactttct tctgcaagtc taacagctga
     1201 cctctagtgc gttcgttaag gtccgcgaag cctaatgaat ttcgaaggcc ctgtaagcca
     1261 taagccaaat catcttgcat tcgcttgaag cgcgataagt cggtcgcaaa ggcatcaagg
     1321 caatgcgaag ccacgaccga ttcaccagcg agcccgagca gccgattcaa attgtccact
     1381 ccaatgcgga ggtcacgcgt tgtcgttctg ggttcccttg tgactgtatt ttcgatggcc
     1441 gggcctttcg gaataacaac ctcttcattg agcgagctca ggctttttac aaacaacgcg
     1501 atctcatcgt gatggtcgct ttcccacttg gccacagcgt cgtcgggcag gttcgcgatt
     1561 tgcgtcagca ggtcgatgcc tcctaacaga tcatcgatac gcccctgcga taatccaaca
     1621 tcgcttcgtt gcgcggcgac caggcaatct tccatcgcat gtgcaacgcg aaccgctgga
     1681 tcacgattca caatccgcgc tgcccccttt agtgagtggg ctccacgcat caactcacgt
     1741 agtctgtggg tcgcggccgg gtctcgttcc aaagcaagaa gatcttcagt catcgacgcg
     1801 gcttgagatt ccacttcggc gcggaagata tctgacagcg agagttcgcc aaggaggtca
//
LOCUS       DATCGC010000895         1986 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_17320, whole genome shotgun sequence.
ACCESSION   DATCGC010000895 DATCGC010000000
VERSION     DATCGC010000895.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1986)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1986)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1986
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17320"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..677)
                     /locus_tag="VIJ87_08625"
     CDS             complement(<1..677)
                     /locus_tag="VIJ87_08625"
                     /inference="COORDINATES: protein motif:HMM:NF017945.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urate hydroxylase PuuD"
                     /protein_id="HEY5444513.1"
                     /translation="MHLDPTLSEWLNLIFRWIHVFAGIMWVGTTYYFTWLDARLTEEE
                     KAVANTGIPAQIWMVHSGGFYVVEKRKVSDLASRTLHWFKWEAGTTWLSGFALLVVVY
                     YLGGGALIDADVRELSLGAAVGIGIGVMVVGWIVYDLLMLSPLGRNEVAFAVVAYILI
                     VGLCFALTQVFSARAAYIHVGATFGTIMAANVWQRILPAQRKMIAALNAGQKPDERLS
                     AQAKLRS"
     gene            complement(813..1157)
                     /gene="uraH"
                     /locus_tag="VIJ87_08630"
     CDS             complement(813..1157)
                     /gene="uraH"
                     /locus_tag="VIJ87_08630"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: protein motif:HMM:TIGR02962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0019628 - urate catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HEY5444514.1"
                     /translation="MSTISTHILDTARGAPASGVAVCLEVQNTDETWTELSHAWTDAD
                     GRVKPFFLVAQPVNDGTYRLVFETEPYFSSLSLDCFYPQVSVVFKVEDASTHYHVPLL
                     ISPYGYSTYRGS"
     gene            complement(1282..1806)
                     /gene="uraD"
                     /locus_tag="VIJ87_08635"
     CDS             complement(1282..1806)
                     /gene="uraD"
                     /locus_tag="VIJ87_08635"
                     /EC_number="4.1.1.97"
                     /inference="COORDINATES: protein motif:HMM:NF010372.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0019628 - urate catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline
                     decarboxylase"
                     /protein_id="HEY5444515.1"
                     /translation="MTNDSDHDMDWLNALSDSEAETEFLKCCGSRTWAHQMTENRPFA
                     DIEELTAKASETWWELDRNDWLEAFRSHPKIGERKAAAEVSSQAQSWSGQEQSGVQNS
                     AAKTLDELATLNHEYEARFGYIYIVCATGKSSEEMLSILKTRIGNDAPTELPIAAAEQ
                     AKITELRLRKLIHQ"
BASE COUNT          493 a          523 c          475 g          495 t
ORIGIN      
        1 ttagaccgca gttttgcctg ggctgataag cgctcatctg gtttttgccc ggcattgagt
       61 gcggcaatca tcttacgttg tgcaggtagg atccgttgcc agacattcgc agccatgatc
      121 gtcccaaacg ttgcgccaac gtggatgtac gccgcgcgag cactgaagac ctgcgtcaag
      181 gcgaagcaca gaccaacaat cagaatataa gcaacgacag cgaacgcgac ctcgtttcga
      241 ccgagtggcg aaagcatcag caggtcgtaa acaatccaac cgactaccat aacgccaata
      301 ccaattccta ctgctgctcc aaggctgagc tcgcgaacgt cagcgtcaat aagtgcaccg
      361 ccgcccaggt agtaaacgac gacaagcagc gcaaacccgc ttaaccaggt tgttccagct
      421 tcccacttga accaatgcag tgttcgtgaa gcgaggtctg aaacctttct cttttcgact
      481 acataaaaac cgccgctgtg gaccatccaa atctgtgcgg ggatgcccgt atttgccaca
      541 gccttttctt cctcagtcaa acgcgcgtcg agccaggtga agtagtaagt tgttcctacc
      601 cacatgatgc cggcaaacac gtgtatccaa cggaagataa ggttgagcca ttcgctgagg
      661 gtcgggtcga gatgcatgtt ggattaatga gagcttgatg ctttgagctt ggtacttagt
      721 gctttgtact tagttcacct tgtaacggaa ctactgaaac ccgagagcta gagcgaacaa
      781 agaacgaagt acaaagtacc aagctcaaag ccctaacttc ccctatacgt cgagtagccg
      841 tacggactga tcagcagcgg tacgtggtaa tgcgttgagg catcttcaac tttgaaaact
      901 accgagacct gtggatagaa gcaatcaaga ctcagagaag agaaataggg ttcggtctcg
      961 aaaaccaatc gatatgtccc atcgttcaca ggctgcgcaa caagaaagaa aggcttgacg
     1021 cgtccatcgg cgtcagtcca ggcatgactg agttcggtcc atgtctcatc agtgttctga
     1081 acttctagac acacggcaac tccactagct ggtgcgcccc gcgcggtgtc gagaatgtgg
     1141 gtggagatgg tgctcatgat cgcgttttga tcttaggcct taggtctttg gtctttggcc
     1201 tttgattcgt tcgccgcgct gaagtatcta atcaaatcga ttttttgcaa agaccaaaga
     1261 tcaaaggcca aaggccaaag actattgatg aatcaacttc ctcaacctca actccgtaat
     1321 ctttgcttgc tcggctgcag caattggcaa ttcggtaggg gcgtcgtttc cgatccgcgt
     1381 cttaaggatg ctcaacatct cttctgacga tttccctgtc gcgcaaacaa tgtagatata
     1441 accaaacctg gcttcgtatt catggttgag cgtagctaat tcatcgagcg ttttcgcggc
     1501 ggagttttgg acgcccgatt gctcctggcc cgaccaagat tgggcttgcg aagagacttc
     1561 tgcggctgct tttctttcgc ctatctttgg atggctgcga aacgcttcca accaatcgtt
     1621 tcgatccagt tcccaccaag tctcactggc tttagcggtc agctcttcaa tgtcggcgaa
     1681 tggtctgttc tcggtcattt ggtgcgccca cgttcgagat ccacagcatt tcaagaactc
     1741 ggtctccgcc tccgaatcag acagagcatt gagccagtcc atatcatgat cggaatcatt
     1801 ggtcatatat catttgacat ttgtcagttg gtcatctgga tcggaccctt tgctactccc
     1861 aaatgcatta cgtcttcctc aattgacgaa atgaaaaatg gcaaatgata tatgaccaat
     1921 gattcttcgg tacgccgtcg ccctcgacca gctctttccc agttcacaga ctgaagtctg
     1981 tgccac
//
LOCUS       DATCGC010000896         1228 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_17323, whole genome shotgun sequence.
ACCESSION   DATCGC010000896 DATCGC010000000
VERSION     DATCGC010000896.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1228)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1228)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1228
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17323"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..752
                     /locus_tag="VIJ87_08640"
     CDS             <1..752
                     /locus_tag="VIJ87_08640"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY5444516.1"
                     /translation="QLQSVIDAGKTIINSNKKGDETFLVRFISSDKIETVQDFTANKD
                     LLMDGLDSFYVEGGQTAIIDAVYLSAEHVSEYRRGDDGDRRRRALIVITDGEDRNSFY
                     KQEQLFARLREEDVQIFVIGFVNELDKETGFIRKSPREKATTLINKLATETGGRAFFP
                     ESLSELPQIATEIIRDLRTQYVLSYNPTNKAQDGSYRAIRVTVDQPNSAEKRIALTRT
                     GRLAKTASEKNAPKAPPVRLPGGATTPTRKP"
     gene            complement(816..1139)
                     /locus_tag="VIJ87_08645"
     CDS             complement(816..1139)
                     /locus_tag="VIJ87_08645"
                     /inference="COORDINATES: protein motif:HMM:NF013129.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMC domain-containing protein"
                     /protein_id="HEY5444517.1"
                     /translation="MPEALGLVECRGLVAMIEAADAMVKSANVRLVGWEKIDAGLVTA
                     IVRGDVAAVRSAVDAGAAAGKRVGEVVATHVIPQPHEDVDVGLPVLHTGETTRKKISG
                     SVKAK"
BASE COUNT          328 a          320 c          298 g          282 t
ORIGIN      
        1 cccagcttca aagcgtaatt gacgccggca aaaccatcat caatagcaac aagaagggtg
       61 acgaaacttt ccttgtccgc tttatcagta gtgacaagat cgaaacggtc caggatttca
      121 cagccaacaa agatttgtta atggatggac tcgatagttt ctatgttgaa ggtggtcaaa
      181 ctgcgattat tgacgcggtc tacctgtccg ctgaacacgt ctctgaatac cgaagaggtg
      241 acgatggaga tcgccggcgc agggcgctca tcgtaattac cgacggcgag gaccgaaaca
      301 gtttctacaa gcaggagcaa ctttttgctc gcttgcgtga ggaagacgtc cagatatttg
      361 ttatcggatt tgtaaatgaa ctagacaagg aaacgggatt tattcgcaag agcccgcggg
      421 agaaagctac gacactaatc aacaaacttg cgacggaaac tggcgggcgc gccttctttc
      481 cagaatcact ctcagagcta cctcaaattg ccactgagat tattagggat ctcaggacac
      541 agtatgttct ttcctataac cctaccaaca aggcccagga cggatcctat cgggctatca
      601 gagtaaccgt agaccaacca aactccgctg agaagcgaat cgcattaaca agaaccggaa
      661 gattggctaa aacggcctcg gagaagaatg cgccgaaggc tccgcccgta cgactgccgg
      721 gaggcgcaac gacgccgacg aggaagcctt aaatcaattg cacattgggt tcgtgaatag
      781 aatactgcgg ttgtgagaat tggctgggaa gtcggctact tcgctttgac tgatccacta
      841 attttctttc gcgtcgtctc acctgtatga agcaccggta agccaacgtc gacatcctca
      901 tgcggttgcg ggattacgtg agtcgcaacc acttctccaa ctctcttgcc ggccgcagct
      961 cctgcgtcaa ccgcacttcg cacggcagcc acatcgccac gaacgatagc agtcacgagt
     1021 ccggcatcga tcttttccca accgacgagc cggacatttg cagatttgac catcgcatcg
     1081 gcagcttcaa tcatcgccac caatccacga cattcaacca atccgagagc ttcaggcatg
     1141 atttgatcct tttttacgag gtgcgggtaa gcggtagatg tataagtcga ctagttcatt
     1201 tcctacggga attctttctt gttcattg
//
LOCUS       DATCGC010000897         1345 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_278544, whole genome shotgun sequence.
ACCESSION   DATCGC010000897 DATCGC010000000
VERSION     DATCGC010000897.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1345)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1345)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1345
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278544"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1345)
                     /locus_tag="VIJ87_08650"
     CDS             complement(<1..>1345)
                     /locus_tag="VIJ87_08650"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEY5444518.1"
                     /translation="NRELEEAGTRLFSAKTSLHESSNLTAQFANKHGDVDDNDGTLLF
                     GNDTRSAGTRSAHLTTLEQGSALTRVGAIMGTPLYMSPEQCSGAQIDTRSDIYSLGVI
                     AYQMLAGQPPFAGPTSTVMKAHREEKPKPLREIAAKVPKRVAGVVMSALSKVPSERPP
                     TAFAFASSLRGQAEGVGALYRRAFSLYSEYFPKFLKLSVLAHIPVIIVTILMTGMLIA
                     ERYIGRGSGWQKIAYICGLVIVALLQIAAFFVSTAIISGVTAIIVVQLSVAPLRPVRL
                     REAMGVLKKRLRPFLNTMFRFLIRLAFGYLLFIIPGIVMSIRYTLYAPVVLIEGLEKK
                     AALKRARELGSRSWRTVIIVSILQILIPLSVSSLVGRIRFGGPSADAQATSQTRQQTE
                     ASSVSGSQTTNGAAVSTGTPPPTGGLKIKRSDEGRDGNVRRQIWEQFLGLMNILIV"
BASE COUNT          341 a          374 c          341 g          289 t
ORIGIN      
        1 gcacgatcaa gatgttcatc agtccaagga actgttccca gatctgcctt ctcacgttgc
       61 catcccgccc ctcgtcgcta cgcttgatct tcagacctcc tgtcgggggc ggcgttccag
      121 ttgacactgc cgctccgttc gtcgtttgac ttccagatac actactggcc tcagtttgct
      181 gccgtgtctg agaagtagcc tgcgcgtcgg ccgatggacc accaaatctg atacgcccga
      241 ccagcgagct tacagacagg ggaatcaata tctgcagaat cgaaacgatg atcaccgttc
      301 tccacgatcg tgaaccaagc tcacgggctc tctttaacgc agccttcttt tcgagtcctt
      361 caatcaagac tactggcgca tacagagtgt agcgaatgga catcacgatg ccgggaataa
      421 tgaaaagcag atacccgaat gcaaggcgaa tcaagaaacg aaacatcgta ttgaggaacg
      481 gtcgcagacg cttctttaga acgcccatcg cttcgcgcaa tcgcaccggt cgcaagggcg
      541 ctacggagag ttgcacaaca atgattgcgg taacaccaga gatgatcgcg gtgctcacaa
      601 agaaagcagc aatttgaagg agcgcgacga ttaccaagcc gcagatgtaa gcgatcttct
      661 gccatcccga tcccctacca atgtacctct ccgcgatcaa cattccggtc attaggatgg
      721 taactatgat caccggaata tgcgcaagga ctgagagttt cagaaacttt ggaaaatatt
      781 cgctatagag cgaaaacgcg cgtcgataaa gagccccaac cccttccgcc tgtccacgca
      841 gggaactcgc aaaagcaaat gctgtgggtg gacgttctga aggaaccttc gagagcgcgg
      901 acattacgac acccgcaact cgcttcggca ctttcgccgc aatctcgcga agaggcttcg
      961 gtttctcttc acgatgggcc ttcatgaccg tcgatgttgg gccggcaaac ggtggttgac
     1021 cagccaacat ctggtaggca atgacaccca aactgtagat gtcggaacgc gtgtcgatct
     1081 gtgcaccact acattgctca ggcgacatgt aaagtggcgt gcccatgatg gcgcctacgc
     1141 gagtcaaagc cgatccttgt tccaaagtcg taaggtgagc ggaacgagtg cctgctgagc
     1201 gagtatcgtt gccaaaaagc agagtaccgt cgttatcgtc cacatcaccg tgcttgttag
     1261 caaactgggc agtcagattc gacgactcat gaagtgaagt ctttgccgag aagagccgag
     1321 taccggcttc ttccagttca cgatt
//
LOCUS       DATCGC010000898         1155 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_446231, whole genome shotgun sequence.
ACCESSION   DATCGC010000898 DATCGC010000000
VERSION     DATCGC010000898.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1155)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1155)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1155
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_446231"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            237..512
                     /locus_tag="VIJ87_08655"
     CDS             237..512
                     /locus_tag="VIJ87_08655"
                     /inference="COORDINATES: protein motif:HMM:NF016141.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HEY5444519.1"
                     /translation="MGLFDVIVLLIVAGVCGSLGQAISGYSRGGCLVSIALGFVGALL
                     GMWLARQLGLPELFAVNIGGTKFPIIWSIIGSALFVAVISLISRSRA"
     gene            complement(718..849)
                     /locus_tag="VIJ87_08660"
     CDS             complement(718..849)
                     /locus_tag="VIJ87_08660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444520.1"
                     /translation="MSDRENEENMIDPPENQGGGSMNLDAPAEDKAAIDPPSNDGGN"
     gene            complement(915..>1155)
                     /locus_tag="VIJ87_08665"
     CDS             complement(915..>1155)
                     /locus_tag="VIJ87_08665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444521.1"
                     /translation="TLALQAQQRFATGGQLESEWRAWLIAAQASQLLGDKNKADEQFT
                     EAKSARSRLEQQWGTEAFKTYVLRPDIQVYYKELG"
BASE COUNT          227 a          292 c          313 g          323 t
ORIGIN      
        1 tggttcggga gtgggcggct cggagaaggc agtaagaagg ggagtattta tcatttgtca
       61 tttgacattt ctcagttggt catttggaag atgaacttcg cgcttggcct ttgttcgatg
      121 attcgttttc ctacgaccca agaccaaagt caacgaaaca ccacgaccgt tttcccaaat
      181 gaccaactga gaaatgacaa atggaaaatg attggttcgg attctaggag gtggaaatgg
      241 gactattcga cgtaatcgta cttctcatcg tcgccggtgt ctgcggatcg ctggggcagg
      301 ccatcagtgg ctattcgcgt ggcggatgtc tggtttcaat agcgctggga tttgttggcg
      361 cgttgttggg gatgtggctt gcgcgtcaac tggggctacc ggaattgttt gccgtgaata
      421 ttggcgggac aaagtttccg atcatctggt ccatcattgg atcggcgttg ttcgtggcgg
      481 tgatctcgct gattagtaga agtagagcgt gaaagaacca ggggcaggag gcagattgca
      541 ggagcaccca cgactgggtg ccctgctcct gcccactgcc cctgcttgct gtttcgcgtc
      601 acctgcggga acacacactt cgtactgtcc ctcaagtgaa cgcgcagatt gttttgctac
      661 caactgacta acctaggagg tggcgccgtt tggtagcgcg aagggcttaa agctctttta
      721 attgccgccg tcgttcgaag gcggatcaat tgcggctttg tcttcagccg gggcgtcgag
      781 attcatgctg ccaccaccct ggttctctgg tggatcgatc atgttttctt cattttctct
      841 atctgacatt ttcgggtcct ccttgtagtc tgagctatct tctctggagt cacttccagt
      901 tgtactagag actttcatcc tagttccttg taataaacct gaatatcagg ccgtaacacg
      961 taagtcttga acgcttccgt tccccattgc tgctcgagcc tggaccgcgc actcttcgcc
     1021 tcggtgaact gttcatccgc cttattctta tcgccgagca actgactcgc ctgcgcagct
     1081 attagccagg cccgccattc tgattccaac tggcctcccg ttgcaaacct ttgctgggcc
     1141 tggagtgcca acgtg
//
LOCUS       DATCGC010000899         1220 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_146323, whole genome shotgun sequence.
ACCESSION   DATCGC010000899 DATCGC010000000
VERSION     DATCGC010000899.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1220)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1220)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1220
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146323"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..330)
                     /locus_tag="VIJ87_08670"
     CDS             complement(<1..330)
                     /locus_tag="VIJ87_08670"
                     /inference="COORDINATES: protein motif:HMM:NF013565.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HEY5444522.1"
                     /translation="MLTFRNTLSGRVEEFRPMKEGEVSFYYCGPTVWNYGHIGNFRSA
                     VAADILRRYLTFKGYKVTHVMNITDVEDRIIAKSQEAGVSIDEYTAKYIDALWEDFDA
                     LGCERPDI"
     gene            complement(484..>1220)
                     /gene="thiL"
                     /locus_tag="VIJ87_08675"
     CDS             complement(484..>1220)
                     /gene="thiL"
                     /locus_tag="VIJ87_08675"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR01379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009030 - thiamine-phosphate kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HEY5444523.1"
                     /translation="VPEDIWQSEFATRLYDGLFQLAAQFDVQLIGGDTSRTPKQIIID
                     SIVVGECSTDGALRRCGAQPGDQIFVTGTLGGSAAGLRLIERGAHLADQNFGASETQI
                     IDHVLLRHLKPEPRVGWGMVLGQEKLATSMIDISDGLSSDLNHLCSESKVGALIHSSL
                     IPIDEQVIELCGRRALDPLQLALHGGEDFELLFTVRPDAVSRLPRRVDGVGVTHIGEV
                     LELTDGVKISEGSRTWELTPGGWKHF"
BASE COUNT          291 a          325 c          315 g          289 t
ORIGIN      
        1 aatgtcgggc cgctcgcagc cgagtgcgtc gaagtcttcc caaagcgcgt cgatgtactt
       61 cgccgtatat tcatcgatgc tgactccggc ttcctgcgat ttggcgatga tgcgatcttc
      121 aacatcggta atgttcatca cgtgggtaac tttgtaaccc ttgaacgtga gataccggcg
      181 gaggatgtcg gcagcgacag ctgaacgaaa gttaccgatg tgaccgtaat tccagacagt
      241 tggaccacag tagtagaaac tgacttcgcc ttccttcatg gggcgaaact cttcaacgcg
      301 gccggaaagt gtgttgcgaa atgtcagcat ggtatttttg cgaaagtcca gaggataaga
      361 gaagaattgc cgattgcaca atgtccgata tgcttcagct tgtcgatgtc ggacaaaaaa
      421 ggccttgaac tagttccaga gcctcttcgc tacagtcagc gacaagctaa accatatcgg
      481 acatcaaaag tgtttccagc cgcccggggt caactcccat gtgcgcgagc cttctgagat
      541 tttgacaccg tcggtcaact ctagaacttc accaatgtga gttacgccga cgccgtccac
      601 ccgtctcggt aacctggaaa cggcgtccgg tctgactgta aatagcaact caaaatcttc
      661 gccgccgtga agagccagtt gtaacggatc caacgctcgg cgtccgcaga gttcgataac
      721 ctgctcgtca attgggatca gtgacgagtg gatcaaagcg ccgactttgc tttcgctgca
      781 tagatgattc aggtctgacg agagtccgtc gctgatatcg atcatggagg tggccagttt
      841 ttcctgaccc agtaccatgc cccaacccac tcgaggttca ggtttcaaat ggcgcagcaa
      901 aacgtgatcg ataatctgcg tttcgctcgc gccaaagttt tgatctgcga ggtgtgcgcc
      961 gcgttcgatt aatcgcagtc ccgcagctga accgcccaat gtgccggtca caaaaatctg
     1021 atcgcctggc tgtgcgccgc aacgccttaa tgcgccgtca gtcgagcatt ctccaacaac
     1081 aatcgagtca atgatgatct gtttaggagt tcttgaagtg tcgccgccga tcagttggac
     1141 gtcgaattgc gcggccagtt gaaacagacc gtcgtacagc ctggtggcaa actctgattg
     1201 ccaaatatct tcaggtacgc
//
LOCUS       DATCGC010000900         1252 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_411400, whole genome shotgun sequence.
ACCESSION   DATCGC010000900 DATCGC010000000
VERSION     DATCGC010000900.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1252)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1252)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1252
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_411400"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..296
                     /locus_tag="VIJ87_08680"
     CDS             <1..296
                     /locus_tag="VIJ87_08680"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: protein motif:HMM:NF014593.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HEY5444524.1"
                     /translation="ITETVSIPTIGIGAGVHCDIQVLVIHDMLGLSFGKQARFVRPYA
                     NLRDVMTDAVTKYADDVRNGTYPSNDESYALPAEAAEELDIKTPAKDLKTQKS"
     gene            310..1194
                     /gene="panC"
                     /locus_tag="VIJ87_08685"
     CDS             310..1194
                     /gene="panC"
                     /locus_tag="VIJ87_08685"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004592 - pantoate-beta-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HEY5444525.1"
                     /translation="MEIINRRQRMSSVARKIRREQDRTIGLVPTMGALHEGHLSLVRE
                     ARRMCDIVVVSVFVNPTQFGPGEDFEKYPRNLTNDTALLTDYNVDYIFAPTVDEMYPK
                     GFASYVNVEGLSDQLEGASRPGHFRGVATVVTVLLNTIRPDFAFFGQKDAQQALIIRR
                     LVKDLAFDTEIVILPTVREDSGLAISSRNLYLTPDEQASATVIHQALTRAKTAYKEGE
                     RSAGRLEILVRSTIEVEPRARVDYVNVVDADTLEHLDRLDERPILIAVAAYIGKTRLI
                     DNTILNKVKKKETGSLKG"
BASE COUNT          313 a          323 c          337 g          279 t
ORIGIN      
        1 tgatcactga gactgtcagc attccaacaa tcggtattgg agctggtgtc cactgtgata
       61 tccaggtttt ggtgatacac gacatgctcg gtctctcatt cggtaagcag gcgcgcttcg
      121 ttcgtcccta cgcgaacctg cgtgatgtaa tgaccgatgc cgtgacgaaa tacgccgacg
      181 atgtaaggaa cggcacctac ccgtccaatg acgaatctta cgcactcccc gctgaagctg
      241 cggaagagtt ggacatcaaa acgcccgcaa aggacttgaa gactcagaag tcctagatcc
      301 attccaacta tggaaatcat caaccgtcgc cagcgcatga gttccgtcgc gcgcaaaatc
      361 cgccgcgagc aggatcgaac cattgggctc gtacccacga tgggtgcgct gcacgaaggc
      421 catttgagtt tggtccgtga agcgagaagg atgtgcgaca ttgtcgtcgt ttcagtcttc
      481 gtcaacccga ctcagtttgg cccaggcgaa gacttcgaaa agtatccacg gaatctaact
      541 aacgacacgg cacttctgac ggattacaac gtcgactaca tattcgctcc gactgttgat
      601 gaaatgtatc cgaaaggttt tgccagttat gtgaatgtcg aaggattgtc ggatcagttg
      661 gaaggcgctt caaggcccgg acattttcgc ggtgtggcca cggtcgtaac ggttctgcta
      721 aacacgattc ggcctgactt tgcattcttc ggacagaagg atgcgcaaca agcattgatc
      781 atccgccggc ttgttaaaga cctcgcgttt gatactgaga tagttatcct gcccaccgtg
      841 cgtgaagatt ccggccttgc gatctcgtcg cgcaatctct atctgacgcc agacgaacaa
      901 gcgtcagcga cagttattca tcaggcgttg acgcgcgcaa agacagcgta caaggaaggt
      961 gaacgaagcg cgggtcgact cgagattctc gtacggtcaa cgatcgaggt tgagccacgc
     1021 gcccgtgtcg actatgtcaa tgttgtcgac gctgacacac tagagcatct cgacaggctt
     1081 gatgaacgac cgattctgat tgcggtagcg gcttacattg gcaagacccg tctgatcgac
     1141 aatacgattc tcaacaaagt gaagaaaaaa gagactggct cgctcaaggg atgaagggat
     1201 tccgagttcc tggtccaaag tcggggcagt agcccgactg taaaggaggg ct
//
LOCUS       DATCGC010000901         1001 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_46281, whole genome shotgun sequence.
ACCESSION   DATCGC010000901 DATCGC010000000
VERSION     DATCGC010000901.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1001
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46281"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1001
                     /locus_tag="VIJ87_08690"
     rRNA            <1..>1001
                     /locus_tag="VIJ87_08690"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          278 a          221 c          301 g          201 t
ORIGIN      
        1 gactaggggc ctcacaaggt taccgaattc aatcaaactc tgaatgccat gaatgtctgt
       61 ccgggagtca gactgcgggt gctaagattc gtagtcgaga gggaaagaac ccagaccaac
      121 agctaaggtc ccgaagttat agttaagtgg aaaaggaagt ggggaagcac tgacagccag
      181 gaggtttgct tagaagcagc aatcctttaa agaaagcgta atagctcact ggtcaagcag
      241 ctctgcaccg acaatacaac ggggcttaaa cctggtaccg aagctttgga tgtcttttga
      301 catggtagga gagcattccg tagctgtgaa ggagcatcga aagagctctt ggagcgatcg
      361 gaaaagactt tgtcggcata agtagcgata acgcgggcga gaaccccgcg caccgtaaac
      421 ctaaggtttc ctgagtcaag ttaatctgct cagggttagt cggtccctaa ggcgaggccg
      481 aaaggcgtag tcgatggaaa tccggttaat attccggaac cgcagctgga tgctatgggg
      541 ggacgcattt ggatagtgag gactggttat ggtttaccag tttaaccggt ataggctgcc
      601 aggcaggtaa atccgtctgg cgtcaggcta aagccgggat cgaggactcc attggagtct
      661 gaaagctcgc aactccaggt gccaggaaaa gcctcgtttg gcttaatcca gtggcgaccg
      721 taccgcaaac cgacacaggt aggtaaggag agaatcctaa ggtgcttgtg agaatgctcg
      781 ttcaggaact aggcaaattc accccgtaac ttcgggataa ggggtgccca gcgcaagctg
      841 ggccgcagtg aaaagcatca ggcgactgtt tactaaaaac acaggtctcc gcaaagtcgt
      901 gaagacgacg tatgggggct gacgcctgcc caatgctgga aggttaagag gagtggtcag
      961 gagcaatccg aagctgcgaa tcgaagcccc agtgaatggc g
//
LOCUS       DATCGC010000902         1046 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_246092, whole genome shotgun sequence.
ACCESSION   DATCGC010000902 DATCGC010000000
VERSION     DATCGC010000902.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1046
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_246092"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..630)
                     /locus_tag="VIJ87_08695"
     CDS             complement(<1..630)
                     /locus_tag="VIJ87_08695"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY5444526.1"
                     /translation="MLVDNGVAPASQTLVSVTRPIEEAMNGIPGIANIRSKTARGSSE
                     INLFFNWNVDIIQELQLVQARLSQLSSTLPPTAEIRNVERLTFAVFPAVGYGLISDKR
                     DQASLRDIVLYTIRPRLARLPGVAIVGVAGGKAREFHVTIDSDRLVAHNVSAQQVVDA
                     VKNSNIIISPGLIEENHQLELALVNGQAKEPGELGSIVVATVNNAPVTVA"
     gene            652..825
                     /locus_tag="VIJ87_08700"
     CDS             652..825
                     /locus_tag="VIJ87_08700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444527.1"
                     /translation="MTIGTRTKDKVEVVSGLKVGETVVIEGNFALADGTKVEVAVPEK
                     EEEAKPKGEEKEP"
     gene            822..>1046
                     /locus_tag="VIJ87_08705"
     CDS             822..>1046
                     /locus_tag="VIJ87_08705"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY5444528.1"
                     /translation="MKIGLLVSKQSRAVLVIVGLLCVAGIYAAWQLPIAVFPQTDFPR
                     IVIIVDNGVAPASQTLVSVTRPIEEAMNGIP"
BASE COUNT          254 a          257 c          287 g          248 t
ORIGIN      
        1 agcaacagtc accggcgcat tgtttaccgt tgcgacaaca atggaaccaa gttcacctgg
       61 ttcttttgcc tgcccgttaa ccagggccag ttcgagttga tgattctcct cgatcaatcc
      121 cggcgagata atgatgtttg aattttttac ggcgtcgaca acttgctgcg cggaaacatt
      181 gtgagcaact aaccgatcgg aatcgatcgt gacgtgaaac tctctcgctt ttcctccagc
      241 gactcccacg attgcaaccc ctggcaagcg agctagccgc gggcgaattg tgtagagcac
      301 gatgtcgcga agactggcct gatcgcgctt gtccgagatc aggccgtaac caacagctgg
      361 aaacactgca aaggtcagtc gctcgacgtt tcgaatctcc gccgtgggtg gcagtgttga
      421 cgacaattgt gaaaggcgtg cctgcaccaa ttgcaattcc tggatgatgt cgacattcca
      481 gttgaagaaa agattgattt cagaagagcc gcgtgcagtt ttggagcgaa tgtttgcgat
      541 gcccggaatg ccgttcatcg cctcttcgat tggacgagta acagaaacga gtgtttgtga
      601 agctggagcg acgccgttgt cgacgagcaa tcagttgcac atgaaaccaa ggtgacgatc
      661 ggtacgcgca ctaaagacaa ggttgaagtt gtttcagggt tgaaggtggg cgagaccgtt
      721 gtgatcgaag gcaactttgc gcttgccgat ggtaccaagg tcgaagttgc ggtccccgaa
      781 aaagaagaag aagcaaagcc aaagggcgaa gaaaaagaac cgtgaagatt ggcctcctgg
      841 tttcaaagca gtcccgtgct gtacttgtaa ttgtggggtt actctgcgtc gcgggaatct
      901 atgcggcgtg gcaactgccc atcgcggtct tcccgcaaac tgattttcct cgcatcgtta
      961 tcatcgtcga taacggcgtc gctcctgctt cacaaacact tgtttctgtt actcgtccaa
     1021 ttgaagaggc gatgaacggc attccg
//
LOCUS       DATCGC010000903         1019 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_146418, whole genome shotgun sequence.
ACCESSION   DATCGC010000903 DATCGC010000000
VERSION     DATCGC010000903.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1019)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1019)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1019
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146418"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            119..904
                     /locus_tag="VIJ87_08710"
     CDS             119..904
                     /locus_tag="VIJ87_08710"
                     /inference="COORDINATES: protein motif:HMM:TIGR02772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0045027 - DNA end binding [Evidence IEA];
                     GO_process: GO:0006303 - double-strand break repair via
                     nonhomologous end joining [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ku protein"
                     /protein_id="HEY5444529.1"
                     /translation="MAARAIWKGELKLGTQKLPVKLYSAVEDKSVRFHILDDSKRNRV
                     KQHMVNPESGKEVEPKEIRKGYEIEPGRFVILDEEDLEALKPEPSREIEVREFVPIDG
                     IPQQFYERPYFLGPDGNQADYFALAQALENQKREGIAHWVMRNKEYTGALGGQDGYLV
                     LSTLRNEGEVIDVGKLPKPAGQAPTKKEIELAKHLVSMLEGEFNPADYKDEYRERVLE
                     FIAKKAKGHAPRLAAVKTKRKTTSLDSVLAKSIASLKKGKRAA"
BASE COUNT          302 a          224 c          267 g          226 t
ORIGIN      
        1 tgtaacgaat gtgacgcacc tacctgttca gactgcattg aaccgtccac gtctgtttgt
       61 ctgtcctgta gtcgaaaaga agcgtcaatc gatattgaac ttgaggtgtg aatgacttat
      121 ggccgcacgt gctatttgga aaggtgaact caagctaggc acacagaaac tgccagttaa
      181 actctactca gctgttgaag ataagagtgt gcgtttccac attcttgacg atagcaaacg
      241 gaaccgagtc aagcagcaca tggttaatcc tgaaagtggt aaagaagtag agcctaagga
      301 gattcgcaaa ggttatgaga tcgagccggg tcggtttgta attcttgatg aagaggatct
      361 agaggctctc aaacctgagc catctcgtga aattgaagtg cgagagtttg ttcccattga
      421 tggtatccca caacaatttt atgagcgacc ttattttctc gggcctgatg gaaatcaagc
      481 tgactatttt gcgttggccc aggccctcga gaatcagaaa cgcgaaggaa tcgctcactg
      541 ggtaatgcga aacaaggaat acacgggcgc tctaggaggt caggacggct accttgtgct
      601 gtcaaccttg agaaacgaag gcgaagtgat tgatgtagga aagctaccta agcccgctgg
      661 tcaagcgcct acgaaaaaag aaatcgagct cgcaaaacat ctggtcagca tgcttgaagg
      721 tgaatttaac ccggcggact acaaagacga gtatcgcgag cgagtattgg agtttattgc
      781 caagaaagcg aagggacacg ctcctcgatt agctgcggta aagacaaaaa gaaagacaac
      841 ttcgctcgac agtgtcctgg cgaagagtat cgcttcgcta aagaaaggaa aacgcgctgc
      901 ctaaacgaac cacaaaagcc aagagtcccc gccgcagtca acgaagtgaa agcggccaag
      961 atcaaaccgc ggatcaatct ggtgtgcgtc cgttttggtc cggaactatc acgtttggt
//
LOCUS       DATCGC010000904         2374 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_17490, whole genome shotgun sequence.
ACCESSION   DATCGC010000904 DATCGC010000000
VERSION     DATCGC010000904.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2374)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2374)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2374
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17490"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1816
                     /locus_tag="VIJ87_08715"
     CDS             <1..1816
                     /locus_tag="VIJ87_08715"
                     /inference="COORDINATES: protein motif:HMM:NF012862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004197 - cysteine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="caspase family protein"
                     /protein_id="HEY5444530.1"
                     /translation="RFERIEIVPLINADATKANVISALQRLAGSKQTAARSEPAVLET
                     LKQVEPEDTVVIYFAGHGTAQGQRFYLIPYDLGFMGEREILNEQDLQTILSHSISDVE
                     LAQAVQGIDAGHLLMFIDACNSGQALEAEEKRRGPMNSKGLAQLAYEKGMYILTAAQS
                     YQAALEAAQLGHGLLTYSLVEEGLKTENADSKPKDGVLTAREWLDFATERVPQLQEEK
                     MKQARGIGLGLSFTYGEQDIVDPQKRNLQRPRSFYRRELEADPFVVSRSATSPRARSL
                     TLNAPLAQTGLSRWFDLQTVSLVARSRFVQNSQDVTTANQAQYQVQFKGRFKFDQAGN
                     YSLNAGIFTGSRFVLGFNDTGIGTGEPVTNLYLKQLYFSAKPITGVEVQFGGLYFNRG
                     ESTEITTYDNDGYLMGERLVVQRPQNFFFDEISATYAFLGDLNTPNINKRWNRLKKSN
                     YHQFLASKRIGERAVVSGDYSFQSGVDTLRQGLRLNTPEFKPIDFFRLEIYERVNSNA
                     AAGLAVYGEKTLLQKRLTLGGGYAQIDPNYGPFNADRLSIGRRYFFNGSYKLTPEFTI
                     STFYTRAFNNNFQINNHTRFEVLVTYNFLRTLQKTRLF"
     gene            complement(1945..>2374)
                     /locus_tag="VIJ87_08720"
     CDS             complement(1945..>2374)
                     /locus_tag="VIJ87_08720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444531.1"
                     /translation="APNGIAISKEGGKLFISDMPFGVYVVDVKTKLSARLPQSVGISP
                     SGSDGLYFYKNSLIGIVNIVSERAGRVARFYLDDSAESITRGAVLDCNHPVYQWPTTG
                     VVVGDSLFYIANSQYGSFDNEHRTFPRTKLHKVVVMKLKL"
BASE COUNT          603 a          605 c          595 g          571 t
ORIGIN      
        1 gcgcttcgaa cgaattgaaa tcgttccgct aatcaacgct gacgcaacga aggcaaacgt
       61 gatctctgcc ctgcagcgtt tggcaggatc gaaacaaacg gcggcccgga gtgaacctgc
      121 cgttctcgaa acgcttaagc aagtggaacc cgaagatacc gttgtcatct acttcgccgg
      181 acacggaaca gcgcagggtc agcgtttcta cttgatcccc tacgatcttg gcttcatggg
      241 tgaacgagag attctgaacg aacaggatct gcagacgatt ctgtcgcaca gtatttccga
      301 tgttgaattg gcccaggctg ttcagggaat cgacgcaggt catttgctga tgttcatcga
      361 tgcctgcaac tccgggcagg cgcttgaagc agaagaaaaa cgccgcgggc cgatgaattc
      421 gaagggtctg gcccaacttg cctatgagaa gggtatgtac attctcactg ccgcacagag
      481 ttatcaggca gcacttgaag ccgcgcaact tggtcacgga ctcctgacct atagtttggt
      541 ggaagagggt ttgaaaactg aaaacgcaga tagcaaacct aaagacggcg tactcacagc
      601 gcgagagtgg ctcgactttg caactgagcg tgtgccccag ttgcaggaag aaaaaatgaa
      661 gcaggcacga gggatcggtt tgggtctttc ctttacctat ggcgagcaag atatcgtcga
      721 tcctcagaaa cgcaatttgc agcgcccgcg ctccttttat agacgagaac ttgaggctga
      781 tccgttcgtt gttagcagat ccgccaccag cccgagggca cgatcactca cgctgaatgc
      841 cccgctcgcg caaacaggtc tctctcgttg gtttgattta cagacagttt cgcttgtcgc
      901 tcgctctcgt ttcgtccaaa acagtcagga tgtgaccacg gcgaatcaag ctcagtatca
      961 ggtgcaattc aaagggcgat tcaagtttga tcaggctggc aattacagcc taaatgcagg
     1021 aatctttacc ggcagcaggt tcgttcttgg cttcaacgat acgggcatcg gaaccggtga
     1081 gcccgtcacg aatctctatc tgaaacaact ctatttttca gcaaagccaa taacaggcgt
     1141 tgaagttcag ttcggaggtc tctatttcaa tcgtggtgaa tcgactgaaa ttaccaccta
     1201 tgacaacgac ggatacctga tgggtgagcg actcgtcgta caacgacctc aaaacttctt
     1261 ctttgacgag atctcagcta cgtacgcgtt tctcggcgat ctaaacacac ccaatatcaa
     1321 caagcgttgg aaccgactaa agaaatcaaa ctaccatcag tttttggcta gcaaacggat
     1381 cggtgagcgc gccgttgtgt ctggtgatta ttcgtttcag tcaggtgtcg atacgttacg
     1441 ccagggccta agactaaaca caccggagtt caaacccata gatttctttc gactggaaat
     1501 ctacgagcga gtcaattcca atgcggctgc cggtcttgcg gtgtatggcg aaaaaacact
     1561 cttgcagaag cgactgacgc tagggggtgg ttatgcacag attgatccca actatgggcc
     1621 gtttaacgct gatcgactca gtatcgggcg tcgctacttc ttcaacggca gttacaaact
     1681 gactcctgag tttacaattt cgacattcta cactcgggca tttaataaca acttccaaat
     1741 caacaaccac actcgatttg aagtgttagt cacgtataac ttcctccgaa ctttgcaaaa
     1801 gaccaggctg ttttaagcaa tcggaacgtg tggtaatcag tggaaccgat taagtccatt
     1861 cagacatgag ccgttcacat tacgagttac ggatcatgaa cggttcagaa ttgtgaacgc
     1921 ccgctcgccg ttgcactttt gtcgtcacaa cttcagcttc attacgacaa ccttgtgaag
     1981 cttggtccga gggaaggttc gatgctcgtt gtcgaagctg ccgtattggc tgtttgcgat
     2041 gtagaacaat gagtctccaa caactacgcc agtcgtgggc cattggtaaa caggatggtt
     2101 gcaatcaagc accgcaccac gtgtgatgga ctcggcggaa tcgtccaggt aaaagcgggc
     2161 cactctgccc gctcgttcgc tgactatgtt tacaattccg atcagactgt tcttgtagaa
     2221 atagagcccg tcgcttccgg aaggagagat gccgacgctc tgcggtagcc gcgcgctgag
     2281 cttcgtcttc acgtcgacca cgtatactcc aaacggcata tctgagatga agagctttcc
     2341 tccctctttg gagatcgcaa tgccgttcgg agct
//
LOCUS       DATCGC010000905         3308 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_315462, whole genome shotgun sequence.
ACCESSION   DATCGC010000905 DATCGC010000000
VERSION     DATCGC010000905.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3308)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3308)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3308
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_315462"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(39..965)
                     /locus_tag="VIJ87_08725"
     CDS             complement(39..965)
                     /locus_tag="VIJ87_08725"
                     /inference="COORDINATES: protein motif:HMM:NF024881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HEY5444532.1"
                     /translation="MHCDCTEKVSLLIDGELSPVEAREVERHLLTCTECQEARGDFLN
                     LRNQFASVPVSFRPVAQREALARILGKPPSVSRGFTRRWLFNPAVAAVASLLIVAGLI
                     ALLLYPRSKPGPAESGEIASGPSRKPTPAPAPSRSAEGGQKDRVVPKGSQPPGSNDKN
                     KAPKKKIPPVIVEPPEDNIAAVVPETRVRAADTETMTAIHFQKSELLLRSFRNVRTSS
                     PGVSAEIGYEKRLAQQLVYQNMMLRREADAAGDAQVASLLESLEPILLDIANLPAKPA
                     HNEVKVIKDRVERKNIVALLQVNSTALARALD"
     gene            complement(1020..1571)
                     /locus_tag="VIJ87_08730"
     CDS             complement(1020..1571)
                     /locus_tag="VIJ87_08730"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEY5444533.1"
                     /translation="MASQDEEFTVLFQDFYPSLCRFLECLLGGRVELAQDLAQESFLQ
                     LHRTAWGTLPHDEARFWLYRVARNFAINEFRKSHTRHRLFDRVVEAMRPRTKNPEEEY
                     ESQERKDLVLGMLSTLPESQRVALLLREHEQLSYRDISQVLNVSESKIKVDIFRARTA
                     LRERWAKKEKTLSKTGAVATGSF"
     gene            1774..2214
                     /locus_tag="VIJ87_08735"
     CDS             1774..2214
                     /locus_tag="VIJ87_08735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444534.1"
                     /translation="MLKRYSFWLWVVVALQILTAAAHSLSFIVTPVAANPTERQLLDL
                     MANYQSDMGAGIHRSMRQLFTALSACFPLLYLLGALNNFYLLKKRVEPGLVKGFLAIQ
                     LVVFGITFGLMAALTFLPPIVATGLVFTFLAVAFFMTPKVEPGS"
     gene            2313..3014
                     /locus_tag="VIJ87_08740"
     CDS             2313..3014
                     /locus_tag="VIJ87_08740"
                     /inference="COORDINATES: protein motif:HMM:NF014269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LON peptidase substrate-binding
                     domain-containing protein"
                     /protein_id="HEY5444535.1"
                     /translation="MSEGIEKVRGVNELPIFPLPVVLFPGVPLPLHIFEPKYRQMLED
                     IGNFNNLFGLSYFDSSTSDRDLPSPGEIGCVAEVTETQTFPDGRSNILTIGLVRYRIE
                     SYVERGDPYLVARVNYFEDTDEDDDALIKAAEDVADTFTRIALAVRTINDERLNLPDI
                     SDTEPQRLSFLVAAAMEVDVEVKQELLELRSTAERLERLKNMLDRAVEGYEERARIHE
                     LAKGNGHSGKKIEIE"
     gene            3011..>3308
                     /locus_tag="VIJ87_08745"
     CDS             3011..>3308
                     /locus_tag="VIJ87_08745"
                     /inference="COORDINATES: protein motif:HMM:NF014636.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HEY5444536.1"
                     /translation="MTEQKTNQIRVRVLFFGGAKDTVGTNSLGLSLDSPATLATASAT
                     LLDKFPELKRFGRSLLFAVNQEYSTPDTEIADNDELAVFPPVSGGSGTVCDYRCP"
BASE COUNT          784 a          902 c          797 g          825 t
ORIGIN      
        1 aaattgaata tccgatcgag cattctcttt cgttcacttc agtccagggc gcgagcaagc
       61 gcagtagagt tgacctgcaa cagcgcaact atattcttcc gctcgacgcg atccttgatc
      121 actttcactt cgttgtgtgc gggctttgca ggaagattgg caatgtcgag caaaataggc
      181 tcgaggctct caagtaacga agccacctgg gcgtcgcctg cagcatcggc ctcgcgtcgc
      241 aacatcatgt tttgatagac caactgctgc gccagccgct tttcatagcc aatttccgca
      301 gacacaccag ggctactcgt gcgaacgttt ctgaatgagc gcaacaacaa ctctgacttc
      361 tgaaaatgga tcgccgtcat cgtttcagta tctgccgcgc gcacacgcgt ctcaggcact
      421 acagctgcga tgttgtcttc cggcggttca acaatcaccg gcgggatctt cttctttggc
      481 gccttgttct tatcgttgct ccccggaggc tgtgaacctt tcgggacgac acgatctttc
      541 tgaccaccct ccgccgaacg tgaaggggct ggagccggtg taggtttcct acttgggcca
      601 ctcgcaatct ctcccgattc tgcaggtccg ggctttgatc ttggatacaa caacagcgca
      661 atcagtccgg cgacgatcag cagcgaagca accgctgcaa cggcaggatt gaaaagccaa
      721 cgccgcgtga acccacgtga aaccgatggc ggcttgccaa gtattcgcgc cagcgcctca
      781 cgttgtgcga ctggacggaa cgaaacgggc acactcgcga attgattgcg caggttcaga
      841 aagtcaccac gcgcttcctg acattcagtg caggtcaaca gatgacgctc aacttcacgt
      901 gcctcaactg gtgaaagctc accgtcgatc agtaaagaaa ctttttcagt gcaatcgcag
      961 tgcatggcta atgtccgata tgcgtcttgt cgctgacttg cccaacgaaa cttcaattct
     1021 caaaatgacc cggtcgctac cgctcccgtt tttgacagag tcttctcttt cttcgcccaa
     1081 cgctctcgca gtgctgttcg agcgcggaaa atatcaacct taattttgct ttccgaaacg
     1141 tttagcacct ggctgatatc ccgatagctc aactgctcgt gctcccgcag caacaatgcg
     1201 actcgttgac tctctggtaa tgtcgaaagc attcccaaaa cgaggtcctt gcgctcctga
     1261 gattcgtatt cctcttctgg attctttgtt cgcggtctca ttgcttcgac tacccgatca
     1321 aacagcctgt gtcgcgtgtg tgacttgcgg aattcgttga tcgcaaaatt tcgagccacc
     1381 cggtaaagcc aaaagcgcgc ctcatcatgg ggcaaagttc cccatgcggt ccgatgcagt
     1441 tgcaggaaac tctcctgtgc caaatcctgc gccagctcga cgcgtccccc tagtaaacac
     1501 tccaaaaaac gacataggct cgggtagaaa tcctgaaaca gcacggtgaa ctcttcatct
     1561 tggctcgcca tatgctgcgc tacatctcct aaaacacgtg ggcttgggaa aagttacaga
     1621 ataagttgct gagagggaaa aaagttccgc cagctcaaaa tagcctggga acatagtgtt
     1681 aactttttgg tcggctcgat aagattcgcc gcgctatcat gaccaaccaa gctctaatca
     1741 atcagactcg attagaaaat cacaggagaa ttcatgctca aacgttattc gttctggctc
     1801 tgggtggttg tcgcgctgca gatccttacc gctgccgccc actcactgag tttcatcgtg
     1861 actcctgtag cggcaaatcc gactgagcgt caactgttgg atctcatggc aaattaccaa
     1921 tccgacatgg gcgctgggat tcatcgctca atgaggcagc tcttcacggc actgagcgcg
     1981 tgttttccac tgctctattt attgggtgca ctaaacaact tctatctcct gaagaaacga
     2041 gtcgaaccgg gcctcgtaaa aggttttttg gcaattcagc tcgttgtgtt tgggattact
     2101 tttggattaa tggcagcact gacttttctg ccaccaattg tcgcgacggg gttagtgttt
     2161 acatttttgg ccgtggcgtt cttcatgact cctaaagtgg aaccaggatc gtgacttttc
     2221 aaaattcgca attctccgcc tttctgccat aatgtcgcct ccttaatgcg catttcaatc
     2281 ctactaacac cagccctctt acgaacttca gaatgagcga aggaatcgag aaagtcagag
     2341 gagtcaacga actcccaatc ttcccgctgc cggttgtact cttccctgga gtgcctttac
     2401 ctctgcatat tttcgagccc aaataccggc aaatgctcga ggatatcggc aatttcaata
     2461 atctttttgg actatcttac ttcgattcat caacctccga tcgagatcta ccgtcgcctg
     2521 gtgaaattgg ctgcgtcgct gaagtgacag agacgcaaac gttccctgac ggccgctcaa
     2581 acatcttaac gattggcttg gtcaggtatc ggattgagtc ctacgtcgaa cgtggcgatc
     2641 cttacctcgt cgcccgcgtt aattactttg aagacacgga tgaagatgac gacgctttaa
     2701 ttaaggccgc cgaggacgtt gccgacacct ttacgcgaat tgcgctggcc gtgcgcacta
     2761 tcaacgatga gcgcttaaat ctgccggaca tctcagacac tgaacctcag cgattgtcgt
     2821 ttctagtggc ggccgcgatg gaagtcgacg ttgaggtcaa acaggaatta ttggaactgc
     2881 ggtccactgc tgagcgattg gagcgtctaa agaacatgct cgatcgagca gtcgaaggtt
     2941 atgaagaacg tgcgcgaatc catgagctag ccaaaggaaa cggacatagc ggtaagaaaa
     3001 tcgaaatcga atgactgagc agaaaaccaa tcagattagg gttcgtgtcc ttttcttcgg
     3061 aggcgccaag gatacagtag gcacaaattc actgggcctc tcactggatt ctcccgcgac
     3121 gctcgcaact gcgtcggcca cactgctcga caagtttccc gagttgaaac gcttcgggcg
     3181 ttcgctgttg tttgctgtga accaggaata ctcgactcca gataccgaga ttgctgacaa
     3241 cgacgaactg gcagtgtttc caccggttag cggcggatca ggaactgttt gtgattatcg
     3301 ttgcccat
//
LOCUS       DATCGC010000906         1064 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_211985, whole genome shotgun sequence.
ACCESSION   DATCGC010000906 DATCGC010000000
VERSION     DATCGC010000906.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1064)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1064)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1064
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_211985"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..252
                     /locus_tag="VIJ87_08750"
     CDS             <1..252
                     /locus_tag="VIJ87_08750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444537.1"
                     /translation="REDLHERLVNGSDYPLPAVNILIRTTNLLKHGYITSGGRYMLNE
                     IYHYNPLLFDFVLKRTLKLPGTNKRLPPSVFMVNAQLGV"
     gene            340..>1064
                     /gene="moaA"
                     /locus_tag="VIJ87_08755"
     CDS             340..>1064
                     /gene="moaA"
                     /locus_tag="VIJ87_08755"
                     /EC_number="4.1.99.22"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019008 - molybdopterin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0061798 - GTP 3',8'-cyclase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HEY5444538.1"
                     /translation="MSVSPRVLRDSYGRAIRDLRVSLTDRCNFRCFYCLPHGEPPIAP
                     KEQMLSYEEIETVCKIFVGLGIEKIRLTGGEPMLRRDIETIISKLAKLKEGDHAGALS
                     SESDKLKHIGHNRLLDLALTTNGYFLPERAQSLKTAGLDRVTISLDSLKRDVFKQMTG
                     VDVLDKVLAGIAAAKDAGLQPIKINAVIVRGHNEDEVADFAAFAREHDVKMRFIEFMP
                     LDSGHDWSREDVVSGKEIRQRIE"
BASE COUNT          266 a          284 c          271 g          243 t
ORIGIN      
        1 cgtgaagatc ttcatgaacg cttggtcaac ggcagtgact atcccttacc ggcagtcaac
       61 attctgatca gaacaactaa ccttctaaaa cacggttaca taacttccgg tgggcgttac
      121 atgctcaatg agatttacca ctacaacccc ctgctgtttg atttcgttct caagcggacg
      181 ctgaaattgc caggaacgaa caaacgccta ccgccctctg tattcatggt gaacgctcag
      241 ctcggagttt gattctgcgc aatctgcgga tacgctttgc acgcgtttcg tcagcagccc
      301 atttggatgc ccaatcgcgg aacggtatga ttgcaagcga tgtcagtgag cccacgagtt
      361 ttgcgagatt catacggccg cgcaatccga gatctgcgcg tgtcgctcac ggatcgttgc
      421 aatttccgct gcttctattg cctgccgcat ggtgaaccac cgatcgctcc caaagagcag
      481 atgctttcct acgaagagat tgaaactgtt tgcaagatct tcgtagggct gggaatcgag
      541 aagatccggc tcaccggtgg cgagccaatg ctgaggcgag acatcgagac gatcatctct
      601 aaactggcga agctgaaaga gggtgaccat gctggcgcct tatcgtcaga aagcgacaag
      661 ctaaagcata tcggacataa tcgactcctc gatctcgcgc taacaacaaa cggttacttc
      721 cttccagagc gcgctcaatc attgaaaact gccggactgg atcgcgtcac cattagtctc
      781 gacagtttga agcgtgacgt cttcaaacag atgaccggcg ttgacgttct cgacaaagtg
      841 ctcgccggaa ttgccgccgc caaagacgct ggtctccaac cgataaagat caatgccgtg
      901 attgtccgcg gtcacaacga agacgaagtt gccgacttcg ctgcgttcgc ccgtgagcac
      961 gacgtgaaga tgcgcttcat cgaatttatg ccacttgatt caggtcatga ttggtcgcgg
     1021 gaggacgtgg tctcaggaaa agaaattcgg caacggatcg agga
//
LOCUS       DATCGC010000907         1956 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_146464, whole genome shotgun sequence.
ACCESSION   DATCGC010000907 DATCGC010000000
VERSION     DATCGC010000907.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1956)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1956)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1956
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146464"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            205..1725
                     /gene="atpD"
                     /locus_tag="VIJ87_08760"
     CDS             205..1725
                     /gene="atpD"
                     /locus_tag="VIJ87_08760"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020045332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HEY5444539.1"
                     /translation="MSTPNVTTDGQHFGKVVQIIGPVLDVEFEGEYLPPIYQALRIVS
                     EGFDVQEPISVIAEVQQHLGEGRVRTVSMLPTDGMVRGMKAIDTGGPITMPVGEGTLG
                     RVLNVIGDPVDTLGDVAHTQRYPIHRHAPTFEEQSTELQMFETGIKVIDLVQPFLRGG
                     KIGLFGGAGVGKTVIVMELINNIAKARSGFSVFAGVGERTREGNDLLREMVESEVIQF
                     GEAFNKHFKETGQFDLTKVDMSTIGKSKVALIYGQMTEPPGARLRVALSGLTVAEYFR
                     DQGMDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPNLATEMGEMQERITSTKTGS
                     VTSIQAVYVPADDYTDPAPATTFAHLDAVTALSRQIVELGIYPAVDPLASNSRILDPR
                     ILGDEHYNTAQDVKRVLQRYKDLQDIIAILGLDELSDEDKLIVSRARKIQRFFSQPFH
                     VAEQFTGLAGKYVKLEDTIRGFREIVDGKHDDLPEQAFYMVGTIEEVLEKAKTIGQ"
     gene            1772..>1956
                     /locus_tag="VIJ87_08765"
     CDS             1772..>1956
                     /locus_tag="VIJ87_08765"
                     /inference="COORDINATES: protein motif:HMM:NF014838.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444540.1"
                     /translation="MADKIQLEVVTPERKVLGEDVDMVTVPGLNGEMGILPGHTPLIS
                     QLKTGVLTYTQDSRNTQ"
BASE COUNT          473 a          492 c          537 g          454 t
ORIGIN      
        1 ggcagtgcca caacgcggta gcgtgtggct ctgactgact ctcgcgatgc ttgaaatcta
       61 gggagccaca cgctatcgcg ttgtggtact gacttcatcg ttgggagcgt ttggctagaa
      121 tttagcgcgt atgttatctt cagcggcatt taagcctgcc agtttgttag ccctaacagg
      181 tggaaagagg agttcaacga cagtatgtct acgcctaatg taaccaccga tggtcagcac
      241 ttcggtaaag ttgtgcagat tatcggacca gttctcgacg ttgagtttga aggagaatat
      301 ctcccgccta tctaccaggc actgcgaatc gtctcggaag gtttcgatgt tcaggaaccg
      361 atcagtgtta tcgcggaagt ccaacagcac cttggcgaag gtcgcgtacg caccgtatcg
      421 atgctgccga ctgacggaat ggtccgtggt atgaaagcca tcgacaccgg tggtccaata
      481 acaatgccgg taggtgaagg tacactcggt cgcgtcttaa acgtaatcgg cgaccctgtg
      541 gatactctcg gcgacgtcgc tcatacgcag cgttatccga tccatcgtca cgcgccaacc
      601 tttgaagagc aatcgacgga actccagatg tttgaaaccg gcatcaaggt tatcgacctt
      661 gttcagccgt ttctacgcgg cggaaagatt gggttgttcg gcggcgccgg ggtgggcaag
      721 acggttatcg tcatggagct aatcaacaac attgcaaaag cgagatcggg cttctcggtt
      781 tttgcaggtg tgggtgagcg gacgcgcgag ggaaacgact tgcttcgcga aatggttgag
      841 tctgaagtta ttcagtttgg cgaagccttt aataagcact tcaaagaaac cggccagttt
      901 gatttgacca aggtcgacat gagcacgatc ggaaaatcaa aggtggcttt gatctacggt
      961 cagatgactg agccgcccgg agctcgcctt cgcgttgctc tctcgggact gacagtcgca
     1021 gagtatttcc gcgatcaggg tatggatgtg ttgctcttta tagacaacat cttccgtttc
     1081 acccaggcag gttcggaagt gtccgcactg ctcggtcgta tgccatcagc agtgggatac
     1141 cagccgaatc tggcgacgga aatgggtgaa atgcaggagc gcattacctc aacaaagacc
     1201 ggttcggtca cctcgattca agccgtttac gttccggctg acgactacac tgaccctgca
     1261 ccggcaacga cgttcgcaca cttggacgcg gtcactgcgc tttcaagaca gatcgtcgaa
     1321 ctcggaattt acccggctgt ggatccgctc gcctctaatt cgcgcattct cgatccccga
     1381 atccttgggg acgagcatta caacactgcg caggatgtga agcgtgtctt gcagcgttac
     1441 aaagacctgc aagacatcat cgcgattctc ggtctcgacg aactttcaga cgaggacaag
     1501 ttgattgtct ctcgcgctcg caagatccaa cgcttcttct cgcagccgtt ccacgtcgct
     1561 gagcagttca ccggcttggc aggaaagtat gtgaagctcg aagacacgat ccgtggtttc
     1621 cgcgaaattg ttgacggaaa acacgacgac ctacccgagc aagctttcta catggttggc
     1681 acgatcgagg aagtactcga aaaggcgaag acaatcggac agtaatcaaa ggtgaggttg
     1741 ggagccgtca ggattccaac ctctaataca tatggctgac aagattcaac tcgaagtcgt
     1801 tactccggaa agaaaagtcc tcggtgaaga cgtggacatg gtgacagtgc ccggtctcaa
     1861 tggcgagatg ggaattcttc caggtcacac gccgttgatc tcacagttaa agacaggtgt
     1921 tctaacttac acgcaggata gtcgaaatac gcagtt
//
LOCUS       DATCGC010000908         2234 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_146480, whole genome shotgun sequence.
ACCESSION   DATCGC010000908 DATCGC010000000
VERSION     DATCGC010000908.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2234)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2234)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2234
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146480"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1341)
                     /locus_tag="VIJ87_08770"
     CDS             complement(<1..1341)
                     /locus_tag="VIJ87_08770"
                     /inference="COORDINATES: protein motif:HMM:NF012652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CpaF family protein"
                     /protein_id="HEY5444541.1"
                     /translation="MKNPLMEQEKERWDADRSSGDSSRVPLRSLQTASPDVMLQDLRL
                     RIHRRLIDTLDLSKLSNLEMERVRVEIRRILEDMVMAEAIPLSRADRDRLVMEVQHEV
                     FGLGPLETLMKDPEISDILVNSSSQIYVERYGKLEKTDVRFRDDAHLMQIIERIVTRV
                     GRRVDESSPMVDARLADGSRVNAIIPPLALDGPVLSIRRFGAERLTINDLIQFNSIPP
                     QMAEVAAACVKSRLNMIVSGGTGAGKTTLLNCLSNYIPENERIVTIEDSAELKLQQEH
                     VVRLETRPPNIEGQGAVTARDLVRNALRMRPDRIVVGEVRGGEALDMMQAMNTGHDGS
                     ISTIHANSGRDALSRLETMMLMAGINLPEKALREQAASAIDVIVQLTRLSDGSRKVVE
                     FSEVTGMEGSTITTQTIFKFEQRGVENGKVIGEFVATGVMPSFMDRLERYGFKIP"
     gene            complement(1353..>2234)
                     /locus_tag="VIJ87_08775"
     CDS             complement(1353..>2234)
                     /locus_tag="VIJ87_08775"
                     /inference="COORDINATES: protein motif:HMM:NF012369.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY5444542.1"
                     /translation="LKSFDAIRKKIDVHTLKANERGHVIAVSSNKGGVGSTTAATNLA
                     ACLVAQHKSVCLVDLVLQFGSVTSFLNIDASYTILDLVKNLKRIDPLFLDGSLVKHTT
                     GIRVLAEPFYAEDARRITPADIDEILDVLAQSFDFVVVDTPKEFDDMLALVLDKANLI
                     LFITEMDVPSLKSAHRALELFERMGIYDKKIRLILNRYVKSKLMTLESVEKALGVKVF
                     WTLPNNYPVAIAAVNQGLSIHECDSKSDIAKSYLGLTEAVLNTFMFSAPSRREAEDEK
                     KSGLLGRLLPPVRGLIK"
BASE COUNT          544 a          623 c          516 g          551 t
ORIGIN      
        1 ggggatcttg aaaccatacc gctccaagcg gtccataaaa gatggcataa caccggtcgc
       61 gacgaactcg ccgatgactt tgccattctc aacgccacgc tgttcgaatt tgaagatggt
      121 ttgggtcgtg atcgtgctac cttccattcc tgtgacttcg gagaactcca ccactttcct
      181 gctgccatcg ctgagtcggg ttaattgcac gataacatcg atggctgagg cggcctgctc
      241 ccgtagtgcc ttttcaggta gatttatgcc cgccattaac atcatggttt ctagtcgaga
      301 cagcgcatca cgcccgctat tggcgtgaat cgtactgatg gaaccgtcat ggcctgtatt
      361 catcgcctgc atcatatcaa gtgcttcgcc gccgcgtacc tcgccaacga caattcggtc
      421 cggtcgcatt cggagagcat tgcgtacgag atccctcgcc gtcaccgcgc cctgaccctc
      481 gatattaggg ggacgcgttt cgagccggac gacgtgctcc tgctgtagct tcaactcagc
      541 agagtcttcg atcgtgacga tgcgttcgtt ttccggaatg tagttcgata agcagttcag
      601 caacgtggtt ttgccggcac cagtgccgcc ggacacaatc atattaagcc gagacttgac
      661 gcatgcagcc gcgacctcgg ccatctgtgg cggaattgaa ttgaattgaa tgaggtcatt
      721 gatggtaaga cgttctgcgc cgaatcgccg tattgacaac accggaccgt cgagcgccag
      781 aggtggaatt attgcattca cacgcgagcc gtccgccaat cttgcatcca ccattggtga
      841 gctctcatcg acccggcgac ccacccgagt gacaattcgc tcaataatct gcatcaggtg
      901 tgcatcgtca cggaaacgaa catccgtttt ttcaagcttt ccatatcgct caacgtaaat
      961 ctggctcgat gagtttacga gaatatcgga aatctccgga tccttcatca atgtttcgag
     1021 aggacccaga ccgaagacct cgtgctgaac ttccatgacc aggcgatctc ggtctgcacg
     1081 gctcagcggg attgcctctg ccatcaccat atcttcgaga atacggcgaa tctcaacgcg
     1141 gacacgctcc atctccaagt tggaaagctt cgaaaggtct aatgtatcga taagtcttcg
     1201 atgaatgcga agccgcaagt cctgaagcat gacatccggg ctcgcagtct gcagagatct
     1261 aagcggcacc cgcgaactgt caccgctgct tcgatcagca tcccagcgtt ccttctcttg
     1321 ttccatcaac gggttcttca tttacgcgcc ccttacttta ttagtccccg cacggggggc
     1381 aagagtctgc ctagcagtcc cgattttttt tcatcttccg cctctctccg agatggcgcc
     1441 gaaaacataa acgtattcaa cactgcctcc gtaagcccca gatagctttt ggcaatgtcc
     1501 gatttcgaat cacattcatg aatagacaaa ccctgattca ctgccgcaat cgctacggga
     1561 tagttattcg gcaaagtcca aaacaccttg acaccaagcg ccttttcaac ggactccaag
     1621 gtcatcaatt tgctttttac ataccgattc agaataagcc gaatcttctt atcatagata
     1681 cccatgcgct cgaagagttc tagcgcccga tgagcgcttt tcagtgaagg aacgtccatc
     1741 tccgtgatga acaagattag attggcctta tccagtacaa gagctaacat gtcatcgaat
     1801 tctttggggg tatcaaccac aacaaaatca aatgattgcg ctaaaacgtc caatatttca
     1861 tcaatatcag ccggcgttat tcgtcgtgcg tcttcggcat aaaatggctc ggccaatact
     1921 cttatgcctg tagtgtgctt caccagcgaa ccgtcaagaa acagagggtc gatgcgcttc
     1981 aaattcttga ccaaatccaa aattgtataa gaggcgtcga tattgagaaa actcgtaacc
     2041 gagccaaact gcaataccaa gtcgacaaga cataccgatt tgtgttgcgc gacgagacaa
     2101 gctgccaaat tggttgcagc cgtcgtcgaa ccgacgcctc ctttgttgga cgagaccgca
     2161 atgacatggc cacgctcatt ggcctttagc gtatggacat cgatcttctt ccgaatcgcg
     2221 tcgaatgact tgag
//
LOCUS       DATCGC010000909         2032 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_246166, whole genome shotgun sequence.
ACCESSION   DATCGC010000909 DATCGC010000000
VERSION     DATCGC010000909.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2032
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_246166"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1753
                     /locus_tag="VIJ87_08780"
     CDS             <1..1753
                     /locus_tag="VIJ87_08780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444543.1"
                     /translation="DTLENVIIEPGKDTTIDIPLGPAQDDKNQQQQQQQRATPDRWRV
                     EFPEYDRYGDRGARGRDIPFKKGRWWDPYNQSVLKGDYPIKGDKTFMILSAVSTTTIE
                     QRRAPTPSDVSSVDPVSGEFFGRPEQLAINETAQVSFEMFHGDTTFKPRDWAIKFSPT
                     FSIPNYLNARENGVVNIDVRRGTDRTDWHVSLEEAFGEVKLADLNANYDFVSVRAGIQ
                     PFVSDFRGFIFSDNNLGARLFGALDNNRVQFNATYFSMLEKDTNSGLNRFDTRHQNVY
                     IANVFRQDFIRKGYTIQGSFHYNDDRRGVQFDRNGFLVRPALIGDVRPHAIEVGYLGV
                     SGDGHLGRLNLSHSYYFAFGHDERNEIAGRKIDVRSNMAAVEASVDRDYLRFKGSFFW
                     AQGDSNPTDDKGTGFDAIFDDPNFAGGQFSFWVRNGIRLTQTGVGLVQPNSLLPSLRS
                     SKIQGQANFVNPGIFIYNGGVDVELTQRIKAIFNVNFLRFHRTEPLEYVLFQNHIRHD
                     IGIDYSVGIAYRPFLINNFTLTFGAASLQTGRGFRDIFTDASRNCPPGVGDFCQPDVI
                     SPNKMLYQLFGQAKFVF"
BASE COUNT          498 a          497 c          533 g          504 t
ORIGIN      
        1 cgacacactt gagaacgtaa taatcgagcc aggcaaggac acaacaatag atatcccgtt
       61 gggccctgcc caggacgaca aaaaccaaca acaacaacaa caacagcggg cgaccccgga
      121 tcgttggcgt gtcgagtttc cggaatacga tcgttacgga gatcgcggcg cgcgcggcag
      181 agacattcca tttaagaaag gacgctggtg ggatccctat aaccaaagtg tcttgaaggg
      241 agattatccg atcaagggcg acaagacctt tatgatcttg tcagcggtca gcacaactac
      301 gatcgagcag cgacgagcgc ccacgccctc ggatgtcagt agcgtcgacc cggtaagtgg
      361 agaattcttt ggacggccgg aacagctcgc gataaacgaa accgcacaag tgagttttga
      421 gatgttccat ggcgacacga cattcaagcc gcgtgactgg gccattaaat tctcacccac
      481 cttcagtatc ccaaactatc taaatgcccg tgagaatggt gttgtgaata tagacgtgcg
      541 tcgtggaaca gatcgaactg actggcacgt atcactcgaa gaggcgtttg gcgaggttaa
      601 gttagctgat ttgaatgcta actacgattt cgtttcggta cgtgccggca ttcaaccttt
      661 tgtttccgat tttcgtggat tcatcttttc agacaacaac cttggcgcaa ggctgttcgg
      721 agcgttagac aataaccggg ttcaattcaa cgccacctac ttttcgatgt tggagaagga
      781 cacgaacagc gggctgaatc ggtttgacac tcgacatcaa aacgtttaca tcgcgaacgt
      841 ctttcgtcag gacttcatac gcaagggcta cacgatacag ggtagctttc attacaacga
      901 tgaccgtcgt ggagttcaat ttgatcgcaa tggttttctg gtgcgcccgg ctttgatcgg
      961 cgatgtccgt ccccacgcga tcgaggttgg ttaccttggt gttagtggcg atggtcatct
     1021 cggtagactc aatctcagtc actcctacta ttttgccttt ggacatgatg agcgaaatga
     1081 aatcgcgggc cgcaaaatcg atgtcaggtc aaacatggcg gcggtggagg catcggtgga
     1141 tcgtgattat cttcgcttca aaggatcatt cttttgggca cagggagaca gcaacccaac
     1201 cgacgacaaa ggtacaggct ttgatgccat cttcgacgat ccgaatttcg caggtggtca
     1261 gttttctttt tgggtaagga atgggattcg tctgacgcag accggagtcg ggttggtcca
     1321 gcccaacagt ttgttgccga gtttgcgcag cagcaagatt caaggccagg ctaacttcgt
     1381 gaatccggga atctttattt acaacggcgg tgttgatgtt gaactgacgc aacgaatcaa
     1441 agcaatcttc aacgttaact tcttacggtt tcaccggact gaaccgctgg agtacgtttt
     1501 gtttcagaac cacattcgcc acgacattgg aattgattac agtgtcggca tcgcctatag
     1561 accatttttg attaataact tcacgctgac gtttggtgca gcatcattac aaactggtcg
     1621 tggcttccgc gacatattca ctgacgcatc gcgtaattgt ccgcctggag taggagactt
     1681 ttgccaaccg gatgtgatca gtccgaataa gatgctgtac caattgtttg gccaggcaaa
     1741 gtttgtgttt tgagttcacg ggtgttctga ctttgtaggg tcgtcgcggc tttgccgctt
     1801 cccgtgcgga aagcctccgg ctttccgtcg tttgaaaaat gaacttgagg cttcgcctcg
     1861 gcggcgtagc cgcaaaccca agttgtagct gatcggaaag gcggagcctt tccgcacgga
     1921 atgcggcgta gccgccaatg agcagcctta gaccaacagt cctagaacca agatgacacg
     1981 cgccagccta attctaatca gggtcctgtt cgttgcgctc acatgtgtgt tc
//
LOCUS       DATCGC010000910         1380 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_180223, whole genome shotgun sequence.
ACCESSION   DATCGC010000910 DATCGC010000000
VERSION     DATCGC010000910.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1380)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1380)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1380
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180223"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..475
                     /locus_tag="VIJ87_08785"
     CDS             <1..475
                     /locus_tag="VIJ87_08785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444544.1"
                     /translation="FTSSVDWQVSSAFTISTGYNYNWLNSDAVVDYFYNSIQHPMGHS
                     LYYVRNSFFFIDTTIRFARRATLFTSYRVNHDNGQGSRVADPLGNPGNLLSSYPMTFQ
                     SPEARLAIKINHRLDWNFGYQYYNYNESPIVGPRPQNYHAHLPYTSLRIYFGRKE"
     gene            528..>1380
                     /locus_tag="VIJ87_08790"
     CDS             528..>1380
                     /locus_tag="VIJ87_08790"
                     /inference="COORDINATES: protein motif:HMM:NF025875.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c3 family protein"
                     /protein_id="HEY5444545.1"
                     /translation="MDLIVVYLLYLSLLPKAINTEATEIADPGAFASAQRRTRPTRKP
                     ASVDYRQFSHLTQPHQLECKTCHQFPSKNWKEIRKGDEGFPDVTEYPEHQSCLSCHRS
                     QFFARQRPVPYICSNCHVKATPRDTSRYPFPSVGEKFLTSDKAKGFVSDFRVYFPHDK
                     HLDVISKRQDGWRNKSVAREGPMRAISFRENSQPKSVRHLESDPKSCETCHQTYQPQE
                     KSDDEFVTKPPKDIGDNFWLKKGTFKTRPITHSTCFTCHNQESELAPLPPDCNACHKL
                     PTPAKLAT"
BASE COUNT          362 a          362 c          311 g          345 t
ORIGIN      
        1 ctttacctcg tcggttgatt ggcaggtaag ctcagctttc acaattagta ctggttacaa
       61 ctacaactgg ctcaacagcg acgccgtcgt ggattatttc tataacagca tccaacaccc
      121 gatgggacac agcctctatt acgtgaggaa cagtttcttc ttcattgata cgacaattcg
      181 gttcgcgaga cgagccacac tatttacttc ttaccgggtg aaccacgaca atggacaggg
      241 ttcacgagtc gccgatcctt taggcaatcc cggaaatctt ctttcgtcat acccgatgac
      301 ttttcaatct cctgaggcaa ggctcgcgat caaaatcaat caccggctcg attggaattt
      361 tggatatcag tattacaact acaatgaaag tccaatagtt ggtccacgcc cccagaatta
      421 tcatgcgcac ttaccttaca cgtctttgcg tatctacttc ggccggaagg aatagtctgg
      481 aggctttgca aggcaccttg ccgatttaga tcggtttgca taaatgcatg gacttaattg
      541 tggtctattt gttgtacctt tcattactgc ctaaggccat taatactgag gctactgaga
      601 tagccgatcc tggtgcgttc gctagtgccc aaaggagaac ccgacccaca cgaaaacccg
      661 cgagtgttga ctatcgtcag ttctctcatc tcacgcaacc tcatcaactt gaatgcaaga
      721 catgccacca gtttccctca aagaattgga aagaaattcg gaaaggtgac gaaggctttc
      781 cggacgttac ggagtatccc gaacatcaga gttgtctcag ttgtcatcgg tcgcagttct
      841 ttgcgcgcca gcgaccagtc ccatatatct gtagtaactg ccatgtaaag gccacgcctc
      901 gcgacacttc gcgttatccg tttccgagtg tcggcgagaa gttcctgacg tctgataagg
      961 cgaagggctt tgtttcggac ttccgggttt attttccgca cgacaaacat ctcgatgtga
     1021 tttcaaaacg acaagacggt tggcgaaaca aatcagtagc gcgcgaaggt ccaatgcggg
     1081 ctattagctt tcgcgaaaac tcccaaccga agagtgtgcg acacctcgag agcgatccca
     1141 agagttgtga gacttgccac cagacttacc agccccagga aaaatccgat gacgagtttg
     1201 taaccaaacc gccgaaagat attggcgaca atttttggtt aaagaaaggg actttcaaaa
     1261 ctcgcccaat cacacattca acgtgtttca cctgtcacaa ccaggagtct gagttggctc
     1321 cgctaccgcc agattgcaat gcttgtcaca agcttccgac gccggcaaag ctcgcgacag
//
LOCUS       DATCGC010000911         2296 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_278864, whole genome shotgun sequence.
ACCESSION   DATCGC010000911 DATCGC010000000
VERSION     DATCGC010000911.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2296
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278864"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1983)
                     /locus_tag="VIJ87_08795"
     CDS             complement(<1..1983)
                     /locus_tag="VIJ87_08795"
                     /inference="COORDINATES: protein motif:HMM:NF020390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1800 domain-containing protein"
                     /protein_id="HEY5444546.1"
                     /translation="MRISTKAISFQLKRTRPFVALFAVAILLGGTFSSSMVSFADGMK
                     EAKAKKLTENQRIVHILNRLGFGARPGDVERVKAMGVENYINQQLNPDKIADSVAESK
                     VKDLGVLNMSTAELYEKFPQPGQLLRQLQARGVLPNDLAEARDNRVKGGANVAPPPGQ
                     KPAGEMQGDPAKGNQPQQPPPGNPVDNEKYRAALQEYYRQNGLQQPQRIMAELQASRI
                     IRAVYSERQLQEVMVDFWTNHFNVFAGKGADRWLLPSYDRDTIRPNAMAKFSTLLEAT
                     AESPAMLFYLDNFQSVTPNPQRNAGQGQRRPGLLAELVNLQRRRDGNPMAQPANRQPP
                     VQQRRGINENYARELMELHTLGVDGGYTQKDVQEVARCFTGWTIFQPRGGAAAANALM
                     GGEAARRSAGSFFFNARAHDDGEKVVLGHKIPAGGGMKDGLMVLDILAHHPSTAKFIA
                     TKLARHFVVDEPSPALVDRVAATFTKTDGDIRETLKAIFTSPEFNSTESYRAKIKRPF
                     ELVISAIRTLGADTNGGPGTHQWIARMGEPLYGFQTPNGYSDSAESWVNTGGLLERMN
                     FGLALASNRVQGTRVNLSSVTGSVSRTELNKAKVMDDSLRTILGGDVSAATRDALLKQ
                     MDQEMVVSLPGPRNPESPQMGGPGRTGPPSGGEMDGP"
     gene            complement(2111..>2296)
                     /locus_tag="VIJ87_08800"
     CDS             complement(2111..>2296)
                     /locus_tag="VIJ87_08800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444547.1"
                     /translation="AVWTNSKPVGNVTTFTMKGMSKDNYFFGVRAVDKDGNRSMVTYP
                     RPLGRNAPATSATTPSP"
BASE COUNT          468 a          661 c          574 g          593 t
ORIGIN      
        1 cggtccatcc atctcacctc cagaaggtgg gccggttcgt cctggccctc ccatctgagg
       61 tgattccgga ttgcgaggtc ccggtaaact aacaaccatc tcctgatcca tctgcttcaa
      121 caaagcatcc cttgtcgcgg ctgaaacgtc tccaccgaga atggtccgaa gtgaatcgtc
      181 catcactttt gctttgttga gttcagtccg gctcacactt cccgtaaccg acgaaaggtt
      241 cactcttgtg ccttgcactc gattgctcgc caatgccaat ccgaagttca tccgctcgag
      301 caagccacca gtgttcaccc agctttccgc tgagtctgag tagccgttgg gagtttgaaa
      361 tccgtagagc ggttctccca ttcgggcaat ccactgatga gttcccggac caccattcgt
      421 gtccgcgccc agcgttctga ttgcactgat caccagttca aatggccgct tgatcttcgc
      481 acgataactt tccgtcgaat tgaactcggg cgacgtgaag atcgctttca aagtctcacg
      541 aatatcccca tcggttttgg tgaacgttgc tgccactcga tccaccaatg ccggcgatgg
      601 ctcgtccaca acaaagtgac gcgcgagttt ggtggcgatg aactttgcag tcgacggatg
      661 atgcgcgagt atatcgagca ccatcaggcc atctttcatc ccgccccccg caggaatctt
      721 gtgaccgaga acgacctttt cgccatcgtc gtgtgcgcga gcattgaaga agaaactgcc
      781 tgcgcttctt cgtgcagctt caccgcccat caatgcgttc gcagccgcag caccgccgcg
      841 tggttgaaag attgtccagc cggtaaagca acgcgcgact tcctgaacgt ctttctgcgt
      901 gtagccgcca tcgacaccaa gcgtgtgcag ttccatcaac tcacgcgcat agttttcatt
      961 gatgccgcgt cgctgttgta cgggtggttg acggttcgct ggttgcgcca ttgggtttcc
     1021 gtcgcgacgt ctttgcagat taaccaattc agccaacagt ccgggccgtc gttgtccctg
     1081 cccggcgttg cgttgcggat tcggcgtcac actctgaaag ttgtcgaggt agaaaagcat
     1141 cgccggactt tccgccgttg cctccaacaa tgtcgagaac ttggccatcg cgtttggacg
     1201 gattgtgtcg cgatcatatg aaggtagtaa ccaccgatca gcgcctttgc cagcaaacac
     1261 gttgaagtgg ttcgtccaga aatcaaccat cacttcctgt aactgtcgct cactgtaaac
     1321 ggcacggatg attctcgagg cttggagttc agccatgatg cgttgcggtt gttgcaatcc
     1381 gttctgacgg taatattcct gaagagccgc tcggtacttt tcgttgtcga ccggattgcc
     1441 aggcggtggt tgttgcggct gatttccttt tgccggatca ccctgcatct caccagcggg
     1501 cttctgacct ggaggtggcg cgacattcgc gccgcccttt actcgattgt cacgcgcctc
     1561 agccaaatcg tttggcaaaa ccccacgggc ttgaagctgt cgaagcaatt ggccaggttg
     1621 cggaaacttc tcatagagtt cggcggtcga catattcagg acgcccaggt ccttcacttt
     1681 gctttcagct acgctgtcgg caattttgtc gggattgagt tgctgattaa tgtagttctc
     1741 aactcccata gccttcacac gttccacatc gccgggtcgc gccccaaacc caagtcgatt
     1801 caggatgtga acgattcgct ggttctccgt gagcttcttt gccttcgctt ctttcatccc
     1861 gtccgcgaag gaaaccatgg agcttgagaa cgtgccgcca agcaggatgg ccaccgcaaa
     1921 cagagcaacg aacggtcgcg tccgctttag ctgaaaacta atggctttcg ttgagattct
     1981 catagtcaac accgcgtttt tgacgatttg tatttcttgg gagattttat ggggtcacta
     2041 gtttgcttca acctcttaga cgccccaatg gagttaatag ttgaaaaaag tgccttctat
     2101 caatccttcc tcacggactc ggagtcgttg ctgaagtagc cggagcattc cgaccaagcg
     2161 gcctcggata cgtcaccata ctgcgattcc cgtctttgtc tacagctcgg acaccgaaga
     2221 agtagttgtc cttggacatt cctttcatcg tgaacgttgt tacgttccca accggttttg
     2281 aattcgtcca gacggc
//
LOCUS       DATCGC010000912         1170 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_246196, whole genome shotgun sequence.
ACCESSION   DATCGC010000912 DATCGC010000000
VERSION     DATCGC010000912.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1170)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1170
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_246196"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1141)
                     /locus_tag="VIJ87_08805"
     CDS             complement(<1..1141)
                     /locus_tag="VIJ87_08805"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase-related protein"
                     /protein_id="HEY5444548.1"
                     /translation="MFASEIRALLASEQVPRKLSNSAVKSYLQFGSVQAPRTIIENVR
                     SLVPGQCLTVSASASSSFNVELLPFAIPADNPVPKSRPEAKAQLRTILEDSVRQHLMS
                     DVPIGVFLSGGMDSSAIVALMSRVSPERPNTFSVVFSEQQFSEACHSRLVAEKFKTDH
                     CEVELSETALLASLPQAIAALDQPSMDGINTYVVSKAVKEAGVTVALSGLGGDELFGG
                     YPSFRRALTFQATNRLAKRLLKVVAPIGQRAQNGSAPRDKFWQLAAGDGSAASVYSIS
                     RQLFSDATVKSLSAVSDNGLGVTTHSNGYSDTFNAISKLELEGYMANTLLRDTDAMSM
                     AHSLEVRVPFVDPVVADFVLGLPGAWKVNGDTGAVPKPLLADVLTD"
BASE COUNT          292 a          350 c          273 g          255 t
ORIGIN      
        1 aatctgtcag cacatccgcc aacaaaggtt tcggtaccgc acccgtatcg ccattcactt
       61 tccatgcacc tggtagcccg agaacaaaat ccgcaacgac tggatcgaca aacggcactc
      121 gcacctcaag cgaatgggcc atgctcatcg catcggtgtc ccgcaacaac gtattcgcca
      181 tatatccttc caactcgagt tttgagatcg cgttgaaagt gtccgagtaa ccgtttgaat
      241 gagttgtgac tccaagcccg ttgtcactca cggcgcttaa agatttgacc gtcgcatctg
      301 aaaacaactg tctactaatg gagtaaaccg acgcggctga accatcaccc gccgccagct
      361 gccagaactt atctcgtggc gcggatccgt tttgggcccg ctgtccaatt ggcgcaacca
      421 ccttcagcag acgtttggcc agacgattcg tcgcttggaa tgtcagcgct cgacgaaagc
      481 tcggataacc accaaacaat tcgtcgccgc ccaaaccaga tagagcgacc gtcacaccag
      541 cctctttcac cgctttcgaa accacgtaag tgttaatgcc atccatgctc ggctgatcca
      601 gcgcagcgat ggcttgcggc agcgaagcaa gtaacgcggt ttcactcagc tctacttcac
      661 aatgatccgt cttaaacttt tccgccacca ggcgcgagtg acaagcttca ctaaactgtt
      721 gctcactgaa cacaacacta aacgtattcg gtcgttcggg actcactcga ctcatcagcg
      781 caacgattgc actcgagtcc attccccctg aaagaaacac accgattggc acgtcgctca
      841 tcaggtgctg ccgcacggag tcctcgagaa tggtacgcag ttgggccttt gcttcagggc
      901 gagatttcgg cacaggattg tcggccggaa tcgcaaaagg caatagctca acattgaacg
      961 acgatgaggc cgatgcgcta actgtcaaac attgtcccgg caccagtgag cgaacgttct
     1021 caataatggt ccgcggcgcc tggaccgatc caaactgaag atacgatttg actgcgctgt
     1081 tgcttagttt tcgcggcact tgctcacttg ccagcagcgc ccttatttca gaggcgaaca
     1141 caagcgaagg agcttcatca tttgaatcaa
//
LOCUS       DATCGC010000913         1915 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_82021, whole genome shotgun sequence.
ACCESSION   DATCGC010000913 DATCGC010000000
VERSION     DATCGC010000913.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1915)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1915)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1915
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82021"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..833
                     /locus_tag="VIJ87_08810"
     CDS             <1..833
                     /locus_tag="VIJ87_08810"
                     /inference="COORDINATES: protein motif:HMM:NF014225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HEY5444549.1"
                     /translation="MRHYARKLAEALSVCGLMNIQFAIKDDRVYVLEVNPRASRTVPF
                     VSKATGVPIARIAALVMSGKKLKDFGLPDELTVKRFFIKSPVFPFAKFPGVDPILSPE
                     MHSTGEVMGVGETFGEAYGKAMMGAGLALPSSGKAFLSVSDVDKGSAVLLARKLARMG
                     FELVATLGTASRLREVGLNVESVFKVNEGRPNIVDHIKSGEISLVINTPLGRVSHFDE
                     QAIRRAALQYNVPCVTTMTGAQALVEAIVDLNGRKAPSVNSIQELHALSASMDAVSSV
                     "
     gene            857..1267
                     /locus_tag="VIJ87_08815"
     CDS             857..1267
                     /locus_tag="VIJ87_08815"
                     /inference="COORDINATES: protein motif:HMM:NF024773.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEY5444550.1"
                     /translation="MSLNSRETIQQILSECRTIAVVGLSSDPSRPSNSVSGYMRRHGY
                     KVIAVNPNEKEVFGDRAYPDLAAVPDKIDLVDIFRRPEEAGHAVDEAIAIGAKAVWLQ
                     EGVIDSAAAQRAIDAGLLVVMDRCLLKEHIRMNR"
     gene            1283..1771
                     /locus_tag="VIJ87_08820"
     CDS             1283..1771
                     /locus_tag="VIJ87_08820"
                     /inference="COORDINATES: protein motif:HMM:NF013183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MogA/MoaB family molybdenum cofactor
                     biosynthesis protein"
                     /protein_id="HEY5444551.1"
                     /translation="MSTQIRALVITVSDACSRGERKDESGETALRLLNELGAEIIARE
                     IIADDMEPLITLLQRHADEGNANLIITTGGTGFGPRDNTPEATRRVIEREAPGLSEAM
                     RSESLKHTRMGMISRGVCGTRAGCLIVNLPGSPKAVSESFSVIGPVLAHVVDLLAGKT
                     RH"
BASE COUNT          456 a          426 c          547 g          486 t
ORIGIN      
        1 cgatgcgtca ctatgcacgc aaactcgcgg aggctctttc agtctgtggt ctgatgaata
       61 ttcagttcgc gatcaaagat gatcgagttt acgtgctgga ggttaaccct cgtgcgtcgc
      121 gaacggtgcc tttcgtgtcg aaagctacgg gtgttccaat cgctcgcatc gctgcattgg
      181 taatgtccgg caagaagctc aaggattttg gactaccgga tgagttaacg gtgaagcgat
      241 tctttatcaa gtctcccgtg tttccatttg caaaatttcc cggggtcgat cccattctga
      301 gtcccgaaat gcactcgacg ggagaagtga tgggtgtcgg cgaaacattt ggcgaagctt
      361 acggcaaggc gatgatgggt gcaggcctcg cattgccttc aagtggaaag gcgttcttga
      421 gtgtgagcga tgtcgacaag ggctcagcgg tcttgcttgc caggaagttg gctcgaatgg
      481 gttttgaact ggttgcgacc ctgggcacag cgtcccgctt gcgcgaagtt ggactgaatg
      541 tcgaaagcgt tttcaaggtt aacgaaggtc gaccgaacat cgtagaccat attaagagtg
      601 gcgagatttc actcgttatc aatacgccgt tgggtagagt ctcccacttc gatgaacaag
      661 cgattcgacg ggcggcattg cagtacaacg ttccatgcgt gactaccatg acaggcgccc
      721 aggctttggt ggaagcgatc gtagatttga atggccgcaa agcgccaagt gtaaattcca
      781 tccaggagtt gcatgcgttg agtgcttcta tggatgcggt gtcttctgtt taagcctgcc
      841 tttcaagggg gaagctgtgt cgcttaattc tcgagagaca attcaacaaa tactttctga
      901 atgtcggacc attgctgttg tcggtctttc atcggatccg tcacggccgt ctaatagcgt
      961 gtcaggatac atgcgaaggc atggctataa agtgattgca gtaaatccaa acgagaaaga
     1021 agtgtttggt gatcgagctt atccggatct cgcagcagtg ccggacaaga ttgatctggt
     1081 tgatatcttt cgccgccctg aagaagccgg acatgcggtt gatgaagcga tcgcaatcgg
     1141 agcaaaggct gtgtggcttc aggagggcgt gattgatagt gctgcggcac aacgcgcaat
     1201 cgatgccggg ctgctagttg tgatggaccg ttgtctgttg aaagaacaca tccgaatgaa
     1261 tcgttgaggg cgaggaatga ctgtgtcgac ccagatacga gcactagtaa tcacggtcag
     1321 cgatgcatgt tcgcggggcg agcggaaaga tgaatcggga gaaactgctc taagactcct
     1381 taacgagttg ggagccgaaa ttatcgctcg cgagatcatc gcggacgata tggaaccgct
     1441 tatcactttg ttgcagcgac atgctgacga aggcaacgcc aacctgataa ttaccactgg
     1501 tggtactggc tttggtccgc gcgataacac cccagaagct acgcgaagag taattgaacg
     1561 tgaagcaccc ggattgtctg aagcgatgag atctgaatct ctcaagcaca cacgaatggg
     1621 tatgatttct cgcggtgttt gcggcactcg agcgggatgt ttgatcgtca atcttcccgg
     1681 ttcgccaaaa gctgttagtg agagcttttc tgttatcggt ccggtattag cacacgtcgt
     1741 tgatttgctt gccggaaaaa ccaggcattg aagtcaattc ataacaactt aaaacgaggg
     1801 taacttcctc gtagcgcgtt cgctttattg ttcagataat tcaagaagaa gttgcccata
     1861 gctgggttga gggttgtgaa cacgggttca tgaccctctc ttttttgatc gtggg
//
LOCUS       DATCGC010000914         2143 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_112174, whole genome shotgun sequence.
ACCESSION   DATCGC010000914 DATCGC010000000
VERSION     DATCGC010000914.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2143
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112174"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..382
                     /locus_tag="VIJ87_08825"
     CDS             <1..382
                     /locus_tag="VIJ87_08825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444552.1"
                     /translation="NAMAEMTIKRFSVLSVGKMQSLLMGIIGLIIGVIYGLIFIFVGA
                     AFTAIGSRSDAPNLGGVPSIVLGILAMILFPIGYAILGFIVGCIWALVYNAAAGMVGG
                     IKFELESVGPDYAAPPAPHQWVPQ"
     gene            435..1631
                     /locus_tag="VIJ87_08830"
     CDS             435..1631
                     /locus_tag="VIJ87_08830"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF017743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent RNA methyltransferase"
                     /protein_id="HEY5444553.1"
                     /translation="MTSNFAQIEATLDVTIERILPGGVGLAHADGKTVFVSLAAKSDR
                     VRVKIDRQQGNLLFASITEILEPSPDRIEPPCPYFGRCGGCDFQQLTYEAQLAAKSEI
                     IRDCLHRIAQVDLPEVKVVSSPNPWHYRARATWQVDQEQQTIGYYERGSRRVCDVVDC
                     AVLVPALQTTLEQLRNTPISAMPGDLKHLDVVLGETGVSLAPAFANFHTNELSVKVGD
                     ETYNYNAEAFFQVNQGVLIELLEFALDDLSGDVALDLYCGVGLFTLPLARRFKKVIGI
                     ESNSVATRFARRNLQQANLPNGDIVTSTLTDWIRSGSNKRDIVDFVLLDPPRAGAESA
                     VIQGILQLKPKTLCYVSCDPATLARDIKKLIAGGFVVRSISGFDMFPQTHHVETVVHL
                     VNEGHQ"
     gene            1706..>2143
                     /locus_tag="VIJ87_08835"
     CDS             1706..>2143
                     /locus_tag="VIJ87_08835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444554.1"
                     /translation="MISSKSVILALSFFLLLFQGSTNYKVANRYPIGGVGGFDYITLD
                     SDARRLYVSHATQVEVLDADSGKILGTIADTPGVHGVAVAGPFKHGFTSNGRENKVSM
                     FDTTTLQLIKKIDVGKGPDGIYYDPATKRVFTNNHGTHDITALD"
BASE COUNT          502 a          580 c          522 g          539 t
ORIGIN      
        1 aaatgcaatg gccgaaatga ctatcaagcg gttcagtgtg ctttcggtag ggaagatgca
       61 atcactcctg atgggaatca tcggattgat cattggcgta atctacggat tgatcttcat
      121 tttcgtaggc gcggcattca ccgctatcgg ctcgcgctct gatgctccta acctgggtgg
      181 cgttccttca atagtcctcg gaatcttggc catgatcttg tttccgatcg gctacgcgat
      241 tctcggtttt attgttggct gcatctgggc cctcgtttac aacgccgctg ccggcatggt
      301 tggtggcatc aagtttgaac tcgagagtgt cggccccgac tacgctgccc cgcctgcgcc
      361 gcatcagtgg gtgccgcaat agggcgaaac ggccgaacac ttaggaacga caagtcagaa
      421 atgcccaatg acatatgacc agtaattttg cccagatcga agccactctt gacgtcacca
      481 tcgaacgcat ccttcctggt ggtgttggct tggcccacgc tgatggcaaa actgtctttg
      541 tctcgcttgc tgccaagagc gatcgagttc gcgttaagat tgatcgccag caaggcaacc
      601 tcctatttgc ttcaattacc gaaatcctcg aaccctctcc tgatcgcatc gagccgccgt
      661 gtccttactt cggtcgatgt ggtggctgtg attttcagca gctgacttac gaggcacagc
      721 ttgccgcaaa gtctgaaatc atccgagact gtttgcatcg aattgctcag gtggacctcc
      781 cggaagtgaa agtcgtttca tctccaaatc cctggcatta tcgcgcgcgc gcaacgtggc
      841 aagtcgatca ggaacaacaa acaatcgggt actacgaacg cggctcaaga cgtgtttgtg
      901 acgttgttga ttgcgctgtg cttgtgcctg cgctccaaac aacactggaa caactgcgca
      961 acactcccat ctccgcgatg ccaggagatc taaaacacct cgacgttgtg cttggcgaga
     1021 cgggagtgtc gcttgccccc gcctttgcaa acttccacac gaatgaactc agcgtcaaag
     1081 ttggtgacga aacctacaac tacaatgccg aagcattttt ccaggtcaat caaggtgtcc
     1141 taattgaatt gcttgagttt gcactcgatg atctcagcgg ggacgtcgcg ttggatctct
     1201 attgtggtgt tggtttgttt accctgccgc tggccaggcg tttcaagaag gttatcggaa
     1261 tagaatcaaa ttcagttgcg acacgctttg ctcgaaggaa cttgcaacaa gcaaacctac
     1321 caaacggaga cattgttact tcgacactca cggattggat ccgatcaggt tccaacaagc
     1381 gagacattgt tgattttgtt ttgctcgatc cgcctcgcgc cggtgcagag tcggcagtta
     1441 tccagggcat cctccagctc aagccgaaaa cactctgcta cgtttcatgt gatcccgcca
     1501 cgttggctcg tgatatcaag aagctgattg caggaggatt tgttgtccga tcaatctccg
     1561 ggtttgatat gttcccgcag actcaccacg ttgagacagt cgtacacctt gttaatgagg
     1621 gacatcagta gaactttcat cgtgtcgtca tctttcctat gagattatgc gaaactgacc
     1681 ccagtccata agtgaggctc acaccatgat aagcagcaaa agcgtaatac tcgccctgtc
     1741 ttttttcctg ctcttgtttc aaggttccac caactacaaa gttgccaatc gttacccaat
     1801 cggcggcgtc ggcggcttcg actatataac cctcgactcc gatgctcgcc ggctctacgt
     1861 gtcgcatgca actcaagtcg aggtactcga tgcagactcc gggaagatct taggcaccat
     1921 cgctgatact ccaggcgttc acggagtcgc cgttgctgga ccattcaaac atggatttac
     1981 aagcaacgga cgcgaaaaca aggtctcgat gtttgatacc acgacgttgc aactcatcaa
     2041 gaagatcgac gttggcaagg gaccggacgg catctattac gatccagcta caaagcgcgt
     2101 ctttactaat aatcatggaa ctcacgacat caccgccctc gac
//
LOCUS       DATCGC010000915         2550 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_46537, whole genome shotgun sequence.
ACCESSION   DATCGC010000915 DATCGC010000000
VERSION     DATCGC010000915.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2550
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46537"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2469)
                     /locus_tag="VIJ87_08840"
     CDS             complement(<1..2469)
                     /locus_tag="VIJ87_08840"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEY5444555.1"
                     /translation="MTATEGAAMADDKHSSPSTYDVSAGFGQRAARVESFLSNALQGG
                     AQTNVTGTTGPTGVGSRSSEGDVTHRANIARGTFHINGTGIKIGVLSNGVANLAQSQA
                     LGDLGTVTILPGQGGTGDEGTAMLEIVHDLAPGAQLYFATANTGITQFAQNIRDLRTA
                     GCDIIVDDVFYFVESPFQDGQTAPTNTNGGVVTQAVVDVTAAGALYFSSAGNSGNLTQ
                     STSGTWEGDFVDGGAAAAPLPSPSPASRLHNFGGQTFDVLTVANTAAPISLYWSDPLG
                     GSANDYDLFRLNSTGTTVQASSTNIQSGTQDPYEQVTQAAGSRLVIVKKAGSADRFLH
                     LDSNRGQLSIRTTGNTHGHSQAADAFCVAATPAVGPFPNPFSSANVTETFSSDGPRRT
                     FFQGNGTAYTPGNFSSTGGTLRQKPDITAADGVQVTGVGGFPSPFFGTSAAAPHAAAI
                     AGLIKSANPLFTPAQIRTALNSTAIDIMSAGVDNVSGVGIIDAFSSIQSLGVAGTAFL
                     QATNITALENPGNGNGVLDAGESATMTIQLKNNGVNGATAISATLSSSTPGVTVTQPS
                     STYPDIAVGGSATNNTNFEFSIAGFVQCPTTLNFSLTVNYTGGPSQVINFTVLSGPAP
                     TAISSTLDTTPPANGPGFTATTGALTIRHFRDGVPSACGSNKAFPGTSTAGNHQYDAY
                     AFQTCANSGPTCVTVTLSAANGVNLFTAAYLGSFNPANLAQNYIADAGGSNTTVSYSF
                     NLPAGAQNFTVVVEDVPAIPASNSPYTLSVSGACVGVCPVVPVLGSNGSTLSQESCPA
                     FNSAVDPGERVSMNLKVINTGTSAT"
BASE COUNT          583 a          654 c          732 g          581 t
ORIGIN      
        1 agttgcagag gttccggtgt tgatcacctt gaggttcatg gaaacgcgtt cccctggatc
       61 aaccgcgctg ttgaatgctg gacaactttc ttgcgaaagc gtcgaaccat tcgatcccag
      121 cacaggaaca accggacaga cgccgacaca cgctccggaa actgacagcg tgtacggact
      181 gttgctcgct ggtattgcag gtacgtcttc aacaacaaca gtgaagttct gcgcaccagc
      241 aggtaaattg aacgagtagc ttactgtcgt gttgcttccg ccagcgtccg caatatagtt
      301 ctgcgcaaga ttcgccggat tgaagcttcc aagataagca gcggtaaaga ggttcactcc
      361 attcgccgcg ctgagtgtga ccgtaacgca cgttggtcca ctgttggcgc acgtctggaa
      421 ggcgtaagcg tcgtactgat gatttccagc ggtgctcgtg ccagggaatg ctttattcga
      481 accacaagcg ctcggaacgc catcgcggaa gtgcctgatg gtgagtgcgc cagtagttgc
      541 ggtaaagcca ggtccattgg ccggcggtgt tgtatcaaga gttgacgaga tagccgttgg
      601 tgcgggtcct gagagcaccg taaagttaat gacctgtgat ggaccaccgg tgtagttcac
      661 cgtcagtgaa aaattcaatg tagttggaca ctgaacgaag cccgcaatcg agaactcgaa
      721 attggtgttg ttcgtggccg aaccacccac agcgatgtca ggataggttg aagacggctg
      781 ggtaaccgta actcccggcg ttgaggagct caaagttgcc gaaattgcag ttgctccgtt
      841 tacgccattg tttttcaact gaatcgtcat cgtggcactt tctccggcat caagaacgcc
      901 gttgccattt cctggattct caagcgccgt gatgttggtc gcctggagga aagccgttcc
      961 tgcgacgcct agcgattgaa ttgatgagaa agcatcgatg atgccaacac cggacacgtt
     1021 atcaactcca gcagacatta tgtctatcgc ggtgctgttc aaagccgttc gaatctgcgc
     1081 gggtgtaaac aaaggattcg cagacttgat taatccagca atcgccgcgg cgtgcggagc
     1141 ggctgcggag gttccaaaga acgggcttgg gaaaccacca actcctgtta cttgaacccc
     1201 gtcagcggca gtgatgtccg gtttctgccg gagtgttccg ccggtggatg agaagttgcc
     1261 gggcgtgtag gcagttccat tcccctggaa gaaggtgcgg cgcggtccat cggacgagaa
     1321 tgtttctgtc acattcgccg agctaaatgg atttgggaat ggaccaactg ccggtgtggc
     1381 agcaacacag aaagcgtcag ccgcctgcga gtgaccgtga gtgttaccgg tagtgcggat
     1441 tgaaagttgt ccacggttgg aatcgagatg caggaacctg tcagcagaac cagccttctt
     1501 cacaatcaca agacgggagc ccgcagcttg agttacctgt tcatacggat cctgggttcc
     1561 gctttgaatg tttgttgaac ttgcctggac agttgttcca gtggagttga ggcggaagag
     1621 atcatagtcg ttggccgagc cgccaagcgg gtcagaccag taaagactta tcggagccgc
     1681 cgtattggca acggtaagca cgtcgaaggt ttgaccgcca aagttatgca gtctcgaagc
     1741 tggtgacggc gaaggtagtg gtgctgcagc cgcgccgcca tcaacgaaat caccttccca
     1801 cgttccggag gttgactgag tcaagttgcc ggaattgcct gcggatgaga aatacagagc
     1861 gccggctgct gtgacgtcaa caaccgcttg ggtaactacg ccgccgttgg tgtttgttgg
     1921 agcagtttgc ccatcttgaa aaggtgactc aacaaaatag aaaacatcat cgacaatgat
     1981 gtcgcaacca gcggtgcgaa gatcgcgaat gttctgtgcg aattgagtga taccggtgtt
     2041 tgcggtggcg aagtagagtt gtgcgccagg agcgagatcg tgaacgatct cgagcatcgc
     2101 agtgccttcg tctccagttc ctccctgacc tggtaggatg gtaacggtac caagatcacc
     2161 taaagcctga ctttgagcca ggttcgcaac accattcgac aacacgccga tcttgatgcc
     2221 agttccgttg atgtggaatg tacctcgtgc gatgtttgcc cgatgcgtga cgtcgccttc
     2281 tgaactccgg ctgccaacgc cagtcggtcc ggtagttccc gtcacgttag tttgagcgcc
     2341 gccctggagt gcgttcgata ggaacgactc tactctggct gctcgctgtc cgaaacctgc
     2401 tgagacgtca taggtagaag gagaactgtg cttgtcatcc gccatcgcag cgccctctgt
     2461 cgcagtcatc gaatcttgct tcggctgcac gaacttcacg gcgtccaaag ctgcaatacc
     2521 ttcgagactc tccaatgaaa cagcagcacg
//
LOCUS       DATCGC010000916         1208 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_146525, whole genome shotgun sequence.
ACCESSION   DATCGC010000916 DATCGC010000000
VERSION     DATCGC010000916.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1208)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1208)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1208
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146525"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..422)
                     /locus_tag="VIJ87_08845"
     CDS             complement(<1..422)
                     /locus_tag="VIJ87_08845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444556.1"
                     /translation="MAASVEITTKPVASAISLRWIISARDDLVWFIGSVLSSYLLLFL
                     YVKGFVSLLVMAATWAILIDAPHVFGTFSRTYFDRTERKNRARLLWGSLLFFAVGPLL
                     VWAGAGFVFFFVAALWAYYHLVKQHYGFMVLYKKKNGDL"
     gene            585..>1208
                     /locus_tag="VIJ87_08850"
     CDS             585..>1208
                     /locus_tag="VIJ87_08850"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF001886.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic pyrophosphatase"
                     /protein_id="HEY5444557.1"
                     /translation="MSNNPPKHFFQAHPWHGVTPGVKAPELVNAYIEIVPTDAVKYEL
                     DKASGHLKVDRPQRFSSMCPSLYGFIPQTFCGVEVGALCAERTGLEKVDGDGDPMDIC
                     VLSEKTFAHGSFFLSARPIGGLRMIDGQQADDKIIAVLESDLAYGRIENVADVPQGLV
                     DRLKHYFLSYKQLPEEAPRKVEIAHVYDRTEAMEVISRSLRDYQVTFG"
BASE COUNT          328 a          292 c          321 g          267 t
ORIGIN      
        1 aggtcaccgt tcttcttctt gtaaagaacc ataaagccat agtgttgctt cacaaggtgg
       61 tagtaggccc aaagagccgc aacgaaaaag aaaacaaatc cagctccggc ccagaccaat
      121 agcggaccca ccgcaaagaa gagcaacgat ccccacaaca agcgtgctcg gttcttcctt
      181 tcggtgcgat cgaaataggt cctggagaag gtgccaaaca catgcggggc gtcgatgaga
      241 atcgcccaag tcgccgccat gaccaggagc gagacaaaac ctttgacgta aagaaacaac
      301 agcaggtagc tggagagcac cgaaccgata aaccaaacga ggtcgtcgcg cgcactaatg
      361 atccaacgca aagagattgc gcttgcgaca ggcttggttg tgatttctac actggctgcc
      421 atgatctgga tgttcgataa ccttagtttg tcgatatcgt tggaggcgtg ttaagcaagg
      481 tcagcgacaa actaaagttt atcggtcatt cattgtttta gttcgactcg cattttatca
      541 tcgagctgaa tcccacaacc aaggccagcg gcaggaggaa accggtgtca aataatccgc
      601 caaaacattt ctttcaagca catccatggc acggcgtgac accgggcgtt aaggcaccag
      661 agttggtcaa cgcctatatc gaaatcgttc cgactgacgc tgttaagtac gaacttgata
      721 aggcatccgg acatttgaag gttgatcgcc cccagcgctt ttcgtcgatg tgtccgtcac
      781 tttacggatt cattccccaa accttttgcg gcgtggaagt gggggcgctt tgtgctgagc
      841 ggacggggtt ggaaaaggtc gacggagatg gcgatccgat ggacatctgt gtgttgtcgg
      901 aaaaaacatt cgcgcacgga agcttttttc tcagcgcacg tccgattggc ggtttgagaa
      961 tgatcgatgg tcaacaggct gacgacaaaa tcatcgcggt actggaatcc gatcttgcat
     1021 acggaagaat cgagaacgta gccgatgttc cgcaaggcct ggtcgaccga cttaaacatt
     1081 actttctaag ttacaagcag ttgccggaag aggctccgag gaaggttgaa attgctcacg
     1141 tttatgaccg gaccgaagca atggaagtga tatcccgaag cctgcgtgac tatcaggtga
     1201 cgtttgga
//
LOCUS       DATCGC010000917         1231 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_411515, whole genome shotgun sequence.
ACCESSION   DATCGC010000917 DATCGC010000000
VERSION     DATCGC010000917.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1231)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1231)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1231
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_411515"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..786
                     /locus_tag="VIJ87_08855"
     CDS             <1..786
                     /locus_tag="VIJ87_08855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444558.1"
                     /translation="RTQSDLGSLPKTANPQRDTKGNGRADRPPGKHDPRRMPYVTGHT
                     PQTESIMYDIIITGLPQVIPIRLGKTGQYGQINIDLAALPNNALQYLILYGIKQAMND
                     KMATKTDKHGTLTNDQIRNKVVSRVEGWYQGVVRQRGGATKIGVDRVRAEARKLAFEA
                     IKVAYDKKGYMVNIPKGTKDRQLFVANRFRDQAGKEPFATKDEWLDYFLALPTSAILM
                     ERAARNIKEENELAGEGDELLDMLKDIEGDTDDDGDDDADEAA"
     gene            863..1018
                     /locus_tag="VIJ87_08860"
     CDS             863..1018
                     /locus_tag="VIJ87_08860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444559.1"
                     /translation="MYDPDDYTHEYVEGQPWRVGYWHVWDDLFDAYGATLDEAIDELR
                     RNMGDKS"
     gene            1015..>1231
                     /locus_tag="VIJ87_08865"
     CDS             1015..>1231
                     /locus_tag="VIJ87_08865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444560.1"
                     /translation="MTLNDADLRFLSELIVQAKLQDTSFAARVEDAMTKRLDQMNKRM
                     ERLMEQMDVMARAKSRVNDVTWYVCKQD"
BASE COUNT          345 a          322 c          334 g          230 t
ORIGIN      
        1 cggacgcaat cggacctagg gtcactaccc aagaccgcta atccccagcg cgacacaaag
       61 gggaacggac gcgcagaccg tcctccgggt aaacacgatc cccggcgtat gccctacgta
      121 acggggcaca ccccacaaac ggagtcaatc atgtacgaca tcatcatcac cggcttgcca
      181 caagtcattc ctatccgctt gggcaaaacg gggcaatacg gtcaaatcaa catcgatctg
      241 gccgcgttgc ccaacaacgc cctgcaatac ttgatccttt acgggatcaa gcaggccatg
      301 aatgacaaga tggcaaccaa gacggacaag cacggcactc tcaccaatga tcaaattcgc
      361 aacaaagtcg tgtcgcgggt agaaggttgg tatcagggtg ttgtgcggca acgcggcggc
      421 gccaccaaga ttggcgttga tcgtgtcagg gcggaagcac gcaaacttgc gtttgaagcg
      481 atcaaggttg cttacgacaa aaagggttac atggttaata tccccaaggg tacgaaagat
      541 aggcagctgt ttgtggcgaa ccggtttcgc gaccaagctg gtaaagaacc attcgctacc
      601 aaagacgagt ggctagacta cttcctagca cttccgacaa gcgcaattct tatggaacgg
      661 gcagcgcgga acatcaagga agaaaacgaa ttagctgggg aaggcgacga gttgcttgat
      721 atgttgaaag acatagaagg cgacacggac gacgatgggg acgatgacgc ggacgaagcg
      781 gcatagccat cgacccaagc cgataggggc gtctaagacg cccctatcgc cttctaatgc
      841 ctatcctttt gggaacccca ccatgtatga cccggacgat tacacacatg agtatgttga
      901 aggccaaccc tggcgcgtcg gttattggca cgtctgggac gaccttttcg acgcttacgg
      961 tgcaacactc gacgaagcaa tcgacgaatt gcgccgcaat atgggggaca agtcatgaca
     1021 ctaaacgatg cagacctgcg gttcctatcg gaactaatcg tgcaggccaa gctacaagat
     1081 acttcgtttg cagcacgtgt cgaagatgca atgactaagc gtcttgacca gatgaacaag
     1141 cgcatggaac gcttgatgga acaaatggac gtaatggcac gtgccaagtc acgagtcaac
     1201 gatgtgactt ggtacgtttg caagcaggac t
//
LOCUS       DATCGC010000918         1985 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_112180, whole genome shotgun sequence.
ACCESSION   DATCGC010000918 DATCGC010000000
VERSION     DATCGC010000918.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1985)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1985)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1985
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112180"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..272)
                     /locus_tag="VIJ87_08870"
     CDS             complement(<1..272)
                     /locus_tag="VIJ87_08870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018251191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HEY5444561.1"
                     /translation="MATKDYSIELLFKALADRTRLRVIHLIGEDEVCVCFLVEVLKTN
                     QPKISRHLAYLRRAGLVSTRREGKWMHYRLTEPPDIHAARIFREVR"
     gene            complement(316..819)
                     /locus_tag="VIJ87_08875"
     CDS             complement(316..819)
                     /locus_tag="VIJ87_08875"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024812.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY5444562.1"
                     /translation="MSTRMCSVEPMREKDWPVVRRIYEEGIASGQATFETQAPGWEQW
                     DAGHHSFARLLLKSSDEILGWAALSRVSARQVYAGVAEVSVYVAANARGKGYGRTLLE
                     ALIRESENNDIWTLQASIFPENVPSIELHRRCGFREIGRRERIATLNGVWRDTILLER
                     RSQVTGI"
     gene            889..1359
                     /locus_tag="VIJ87_08880"
     CDS             889..1359
                     /locus_tag="VIJ87_08880"
                     /inference="COORDINATES: protein motif:HMM:NF041414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsI/CadI family heavy metal resistance
                     metalloenzyme"
                     /protein_id="HEY5444563.1"
                     /translation="MENNTRTQIKTLKAHIALNVSDVKRSTEFYKQMFGIQASKERDG
                     YAKFDVENPPLNLTLNQVAQVNHGALSHLGIQVESTEDVLAARQNWIHAGLITRDEMA
                     TNCCYALQDKTWVQDPDGNQWEAFVVLKDNLPTSSQCCATDSAAPVTIGTNMCT"
     gene            1554..>1985
                     /locus_tag="VIJ87_08885"
     CDS             1554..>1985
                     /locus_tag="VIJ87_08885"
                     /inference="COORDINATES: protein motif:HMM:NF024688.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase
                     N-terminal domain-containing protein"
                     /protein_id="HEY5444564.1"
                     /translation="MSLLESINSPADLRSLQPDQLQTVADEIRTYILETMSRVGGHTG
                     ASLGAVELAVALHYAFDTPADRLVWDVGHQAYAHKILTGRRDLLPTIKQYGGISGFLR
                     RDESEYDSFGAGHASTSLSAALGMAIARDRKGEDHHVVALIG"
BASE COUNT          512 a          516 c          487 g          470 t
ORIGIN      
        1 tcacgaactt cacgaaaaat tcttgcagcg tgtatatccg gtggttcagt tagtcgatag
       61 tgcatccact taccttcacg gcgagttgag acgagacctg cgcgtcttag atacgccagg
      121 tgtcgtgaaa tcttaggttg atttgttttg agtacttcta caaggaagca aacacacacc
      181 tcgtcctcac caattagatg gataacacgc aatctcgtgc gatcggcgag cgccttaaag
      241 agcaactcaa tgctgtagtc tttcgttgcc atctgctttc gaatacgtcc gtgagttgaa
      301 tcgagttcct ttctatcaaa taccagtcac ttggctcctg cgttcaagga gtatcgtatc
      361 gcgccaaact ccattgagcg tggcaattcg ttcacggcgt cctatctcac gaaagccaca
      421 acgccgatgt agttcaatgc tcgggacatt ctcagggaaa atgctggcct gcaaagtcca
      481 gatatcattg ttctcagatt ctcgaattaa cgcttccagt agagtccgac cataaccctt
      541 tccacgagcg ttggctgcca cgtagacgct aacctcagcg acgcctgcgt aaacctgtct
      601 cgcggagacg cggctcagcg cagcccaacc aagaatttcg tcgctagact tgagcaaaag
      661 cctggcgaaa gagtgatgac cggcatccca ttgctcccaa cccggagctt gcgtttcgaa
      721 tgtcgcctgc ccactagcaa tcccttcctc gtaaatccga cgcacgacgg gccaatcctt
      781 ttcccgcatc ggctcaactg aacacatgcg cgttgacata tctgtattca caggatattc
      841 tgcctctcat atttgcgttg gcgaatgtaa ctatagtgga ggtgcgagat ggaaaacaac
      901 accaggacac aaatcaaaac cttgaaagcg cacatagcgc tcaatgtcag cgacgtaaaa
      961 cgaagcaccg aattctacaa acagatgttc ggcattcaag cgtcgaagga gcgcgacggt
     1021 tatgcaaaat ttgacgtgga gaatccacca cttaacctga cgctaaatca agttgcccag
     1081 gtgaatcatg gagcgctttc tcatcttgga atccaagtcg agagcacgga agacgtgctg
     1141 gccgcccggc agaactggat ccacgccggg ttgataaccc gcgacgaaat ggccacgaac
     1201 tgctgttacg cacttcaaga caaaacgtgg gtccaggatc cagatggcaa tcagtgggag
     1261 gcgtttgttg tccttaaaga taacttgcca acaagttcgc agtgttgcgc cacagattca
     1321 gcggctcccg ttacgattgg aacaaacatg tgcacataag aaggaaaagg cgcggaccga
     1381 cgaatcgatc cgcgcctcct cttcaacggc aataggtttt tctattgact tccggcagca
     1441 aggcagagta ctttgcaatg ccaagcagct aaggatgctg cgattggaga gtaggttcgg
     1501 agctatctcg gtgaagtagt aaaaatcgat gtttggggta caatgcgcca acaatgagcc
     1561 ttctggaaag tattaactcg ccagccgatt tacgtagtct gcaacctgat caacttcaaa
     1621 cagtcgcgga tgaaatccgc acctatattc tggaaacgat gtccagagtt ggcggtcata
     1681 caggcgcttc acttggcgcc gttgagcttg ccgtcgcact tcattacgcc ttcgatacac
     1741 cggctgatcg acttgtttgg gacgttggtc accaggctta tgcacataag atcctgactg
     1801 gtcgtcgaga ccttttgccc acaatcaaac agtacggcgg tatcagtggt tttcttagac
     1861 gtgatgagtc ggaatacgat tcattcggcg ctggacacgc ttcgacgtca ttatcagcag
     1921 cgttgggaat ggcgatcgct cgtgatcgta aaggtgaaga tcaccacgta gtcgcgctaa
     1981 ttggc
//
LOCUS       DATCGC010000919         1963 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_180291, whole genome shotgun sequence.
ACCESSION   DATCGC010000919 DATCGC010000000
VERSION     DATCGC010000919.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1963)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1963)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1963
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180291"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..906
                     /locus_tag="VIJ87_08890"
     CDS             <1..906
                     /locus_tag="VIJ87_08890"
                     /inference="COORDINATES: protein motif:HMM:TIGR00641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HEY5444565.1"
                     /translation="TLRDGIEYVAWGLAAGLEIDQFVPRMSFFFNAHNDFFEEIAKYR
                     AARRIWAREMKNRFGSSNERTLQLRFHTQTAGVSLTVQQPLNNIVRVAIQALAGVLGG
                     TQSLHTDAYDEALALPTDRAALIALRTQQIIAEETGVVNTVDPLGGSYYLEALTEKME
                     QEALEYFRKIDGMGGMVSAIEKGFPQREIQDSAYQYQKAVERGEQVIVGVNKYTMSSE
                     SSEIPILVIDESVRGHQVERLEQTRSSRDNGAVKTALEKLKQAAQKDENTMPSIIDAV
                     RSYATLGEICSALRDVYGLYEEPAF"
     gene            1037..1441
                     /locus_tag="VIJ87_08895"
     CDS             1037..1441
                     /locus_tag="VIJ87_08895"
                     /inference="COORDINATES: protein motif:HMM:TIGR00640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin B12-binding domain-containing protein"
                     /protein_id="HEY5444566.1"
                     /translation="MNERKIRVLVAKPGLDGHDRGAKVIARALRDAGMEVIYTGLRQT
                     PEMIAAAALQEDVDAVGVSILSGAHNTLCPRIVQLLREKGMNECLVLVGGIVPQEDLA
                     RLKEVGVAEVFLPGSSTENIVKFLRENVKPRE"
     gene            1469..>1963
                     /locus_tag="VIJ87_08900"
     CDS             1469..>1963
                     /locus_tag="VIJ87_08900"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HEY5444567.1"
                     /translation="MNGDLLLTNPSPFTTIVTFNRPASRNSLSIAALYELDSLLSILV
                     NKPALKTLIFTGVEDVFLSGANIRELSSLDSVTAREFSSLGQKLFQRLAEAPQLTIAA
                     INGYCMGGGLDFALACDIRLAASAAVFAHPGARLGIITGWGGTQRLPRLIGKARAIEF
                     FVTAR"
BASE COUNT          534 a          473 c          492 g          464 t
ORIGIN      
        1 acattacgtg atggaatcga gtatgtcgcg tggggattag cagctggttt agagattgat
       61 caatttgttc ccagaatgtc gttctttttc aacgcgcaca acgatttctt tgaagagata
      121 gcgaagtatc gtgcagcaag acgaatctgg gcgcgggaaa tgaagaatag atttggcagt
      181 agcaacgaac gcactcttca gctccgcttt catactcaaa cagctggtgt ttcactaacg
      241 gtccaacaac ctctgaataa tattgtacgt gtcgcgattc aggcgcttgc cggcgttcta
      301 ggcggcacgc aaagtctgca caccgatgcc tacgacgagg cactcgcatt acctacggat
      361 cgggcagcgc tgatcgccct acgaacacaa caaatcattg ccgaggaaac gggtgtagtt
      421 aacaccgtgg atcctctggg tggttcttat taccttgaag cgctaaccga aaagatggag
      481 caagaggcgc tcgaatattt tcgcaagatc gatggtatgg gtggaatggt ctcggcaatt
      541 gaaaagggat ttccacaacg cgagatccag gattcagctt atcaatacca gaaagctgtg
      601 gagcgggggg aacaagtcat agtcggagtt aataagtaca cgatgagcag tgagtcatcc
      661 gaaatcccga ttctagtaat agatgagtcc gtccgcgggc atcaagtcga acgcctcgaa
      721 caaacacgat caagccgaga caatggagcc gttaaaactg cgctcgagaa actcaagcaa
      781 gctgcacaaa aagacgaaaa cacaatgccc tcgattatcg acgccgttcg ctcatacgcc
      841 acattaggtg aaatctgctc agctctccgc gatgtgtatg gactgtacga agaacccgct
      901 ttctaacttc tcgctaaagc ttgtctaaaa atcgaatagt tttgttagct tcacaagaga
      961 agactactct cacacattaa ccagacgaag gcgactaacg attgggcatt tcgacagcta
     1021 aggttagaat gctgacatga atgaaaggaa gatccgtgtc ctggtagcca agccggggct
     1081 tgatggccac gatcgggggg caaaagtgat tgcgcgcgca ttgagagatg cgggaatgga
     1141 agtcatctat accggtctgc gccaaacccc cgagatgatc gcagcagcag cgttgcaaga
     1201 agatgttgac gccgttggag tatcaattct cagcggagca cacaacacac tctgcccccg
     1261 cattgtccag ttgctcaggg aaaaaggtat gaacgagtgc ctggtcctgg ttggcggaat
     1321 tgttcctcag gaagatctag caagacttaa agaggtcggc gttgccgaag tttttctacc
     1381 gggaagctct acagaaaata ttgtgaagtt tcttcgtgag aacgtaaaac ctcgcgaata
     1441 acgattgaat gaatgaatga atgaatgaat gaatggcgat ctacttctta ccaatccctc
     1501 gcccttcact acaatagtca cttttaaccg acccgcgtct cgaaattcac tctcaatcgc
     1561 tgcactatat gaactggata gtctgctatc gattctcgtt aacaaacctg ctcttaaaac
     1621 actaatcttc acgggcgtag aggatgtctt cctctcggga gcaaacattc gtgagctctc
     1681 atcgctcgat tctgtcactg ctcgtgagtt ctcttcactg ggccagaagc ttttccaaag
     1741 actagctgag gcaccgcaat taaccatcgc agcaatcaac ggttactgta tgggtggcgg
     1801 attagatttt gcgcttgcct gtgacattcg ccttgctgca agtgctgcag tcttcgcgca
     1861 tccaggcgca cgacttggaa tcattaccgg atggggtggc acacaacgac tcccccgcct
     1921 cataggcaaa gcgcgagcga ttgagttttt tgttacggct cgg
//
LOCUS       DATCGC010000920         1870 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_411542, whole genome shotgun sequence.
ACCESSION   DATCGC010000920 DATCGC010000000
VERSION     DATCGC010000920.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1870)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1870)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1870
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_411542"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..370)
                     /locus_tag="VIJ87_08905"
     CDS             complement(<1..370)
                     /locus_tag="VIJ87_08905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HEY5444568.1"
                     /translation="MAESRTVPESLGARFTNIRTRINEALKRSQRSSDDLTLIAISKT
                     HPASVIREVIELGVTDLGENRVQEAETKIPEVGRDKARWHLVGHLQANKARRAVKLFD
                     VIHSLDSIELAKRLDRLCEEE"
     gene            692..778
                     /locus_tag="VIJ87_08910"
     tRNA            692..778
                     /locus_tag="VIJ87_08910"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:726..728,aa:Leu,seq:cag)
     gene            946..1332
                     /locus_tag="VIJ87_08915"
     CDS             946..1332
                     /locus_tag="VIJ87_08915"
                     /inference="COORDINATES: protein motif:HMM:NF014950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY5444569.1"
                     /translation="MSIDQAILKDSDNPRPSAAQTQMVHLKLAERPDRDRIQRVVDLA
                     DALLSEAETLARDKAFTDEANKLRPLDIVGGIDFYDEVQRFETHLIKMALAETGGNQA
                     RAARLLGIKATTLNSKIKLFSIEVSQ"
     gene            complement(1345..1776)
                     /locus_tag="VIJ87_08920"
     CDS             complement(1345..1776)
                     /locus_tag="VIJ87_08920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444570.1"
                     /translation="MSTEQKTELELIYTIFCDDVRLEAGNKLSFMGVFQNIMVQQLPA
                     SLIKFAVVNHWRGKGSYLSEVRILTPDRQQAVVVSQPTSFEVASGGFADNISFFVNVT
                     FPKPGQYLVQTLVNSSLFEEQVLTISDATETETLGSSEAIN"
BASE COUNT          457 a          472 c          455 g          486 t
ORIGIN      
        1 gttcctcttc acacaaacga tccaggcgct tagccagttc aattgagtcg agtgaatgta
       61 tcacgtcgaa aagcttaacg gcgcggcgcg ctttgtttgc ttgcaaatgt ccaaccaggt
      121 gccatcgagc tttatctcgt cctacttcgg ggatcttcgt ttccgcttct tgaacacgat
      181 tctccccgag atcggtaact ccaagctcga ttacttccct gattacgctt gcgggatggg
      241 ttttgctgat ggcgatcagc gttaggtcat ccgaagaacg ctggctacgt tttaaggctt
      301 cgttgatgcg agtcctgatg ttcgtgaacc gtgcaccaag actctccggg accgtgcggg
      361 attctgccat tcgtatctgc cgttatctcc ttcgtacatc gtataacaag agtaagacac
      421 gcgacagtcg cgagcttgcg ttgggttttc cacagcgcgg cgtcagccgc aaccaaatgc
      481 tgcgctccct catcaccgcg agccagtccc gtaaaattac ggtgacgctc ggagaaactt
      541 gtcggcctct gcttgtaatt tttccttcac tagtgcgact gcttggtgag gatagtttga
      601 aagacaactg agagtttcca ttcgaacatc aacaaaactg cccttcttga caccctacaa
      661 ccccattcgc ataatggccg cgccattatt tgcggatgtg gcggaactgg cagacgcgca
      721 ggtctcagaa gcctgtgatg gtgacatcgt ggaggttcaa gtcctctcat ccgcaccaga
      781 caaagaaaat tcggcgaagc cccaaagagg gcttcgccgt ttttattttt gttaaggcag
      841 atcattcgca aaagagatcg aagtgctggc aacaaaaaaa gttgccacgg aatctactac
      901 ttcggtgttt tcgtactaag aggttggttc gaaagggaag cattcatgag catagatcaa
      961 gccatactaa aagactcaga taatccgaga ccttctgccg cccaaaccca aatggttcat
     1021 ctgaaactgg cagagcgacc tgaccgtgat cgcatccagc gggttgtaga cctggctgat
     1081 gccttactaa gcgaagccga gaccctggcc cgcgataagg catttacaga cgaagctaac
     1141 aaacttcgac ctttggacat cgtcgggggc atcgatttct atgacgaggt ccagagattt
     1201 gagacccact tgatcaagat ggcgttggct gaaacgggcg ggaatcaagc aagagcagct
     1261 cgactgctcg ggatcaaagc gacgactctc aattctaaaa tcaagctgtt cagcatcgaa
     1321 gtttctcagt aagtcgcggg ctcgttaatt gattgcttct gatgaaccga gcgtctccgt
     1381 ttcggttgca tcggaaattg tcagcacttg ttcctcgaat aaactcgagt ttactagtgt
     1441 ctggacgaga tactgcccgg gcttagggaa agtcacgttt acaaagaagc tgatattgtc
     1501 ggcgaaccct cctgaagcga cttcaaaact agtaggctgc gaaaccacga cggcttgctg
     1561 acgatccggt gtgaggatcc gtacttccga aagataactt cccttccctc gccagtgatt
     1621 caccacggca aacttaatca acgaggccgg aagttgttgg accattatgt tttgaaacac
     1681 tcccatgaac gacaacttat tacctgcttc aagtcggacg tcatcgcaaa agattgtgta
     1741 aattaattcg agttcagttt tctgttcagt agacatttgt tctccatctt gtggcacaga
     1801 cttcagtctg tgtcgttcct cttaaagacg ttcgtgttgt ttagtgtgat ttcgtggatc
     1861 gtttcctccg
//
LOCUS       DATCGC010000921         2415 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_112230, whole genome shotgun sequence.
ACCESSION   DATCGC010000921 DATCGC010000000
VERSION     DATCGC010000921.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2415)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2415)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2415
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112230"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..209)
                     /locus_tag="VIJ87_08925"
     CDS             complement(<1..209)
                     /locus_tag="VIJ87_08925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444571.1"
                     /translation="MSPDFRELLLAFNAANVEYLLVGAHALAVYGHVRATKDLDVWIR
                     PEKNNADRVIAALTSFGAPLIDLSR"
     gene            complement(454..858)
                     /locus_tag="VIJ87_08930"
     CDS             complement(454..858)
                     /locus_tag="VIJ87_08930"
                     /inference="COORDINATES: protein motif:HMM:NF022281.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2752 domain-containing protein"
                     /protein_id="HEY5444572.1"
                     /translation="MQHEFWYRRVTVIAIWGALIAGAVYLFSFEPGKNGFFPGCPFRF
                     FTGITCPGCGSTRALHQLLHGHIQAAFMLNPLFVIALPILFCLLLRHTALSFQGKTPR
                     PNALPAAYIYLIFVVVVSFWIFRNTPFYPFVS"
     gene            complement(930..1313)
                     /locus_tag="VIJ87_08935"
     CDS             complement(930..1313)
                     /locus_tag="VIJ87_08935"
                     /inference="COORDINATES: protein motif:HMM:NF017007.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NINE protein"
                     /protein_id="HEY5444573.1"
                     /translation="MTRYCTKCGAVNDDLAQFCSTCQTPLTPVVSGGYQPMQSVNAGA
                     ITDWKAMGADKKITAGICAILLGWLGIHKFILGYSTEGIIQLILGVLTCGLTNIIGII
                     EGIIYLTKSDEEFVRTYIQGRKGWF"
     gene            complement(1390..1683)
                     /locus_tag="VIJ87_08940"
     CDS             complement(1390..1683)
                     /locus_tag="VIJ87_08940"
                     /inference="COORDINATES: protein motif:HMM:NF016394.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CD225/dispanin family protein"
                     /protein_id="HEY5444574.1"
                     /translation="MSQEWTPPPAAGATESVPNYLIPAIISIFCCLPLGIVGVIFAAQ
                     VNGKVAAGDLQGAVDASKKAKLFSFIAIGLGIAGWACYLIFWVIIGGAAMMNS"
     gene            complement(1756..2253)
                     /locus_tag="VIJ87_08945"
     CDS             complement(1756..2253)
                     /locus_tag="VIJ87_08945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444575.1"
                     /translation="MNNKLKPALIGGVVLGLLSVIPFINWVNFCCCLWAILGGMLASY
                     LYIKNSPTPATAGDGALVGVFAGLVGGAIAIVIGIPVSLLIGTAVNEVLLRLVENANP
                     GQAEMMRAQMAAQSVASAIGRGIIGAILLFVFAIIGGLLGVPIFEKRKGDLTPPAPPA
                     GGYAA"
BASE COUNT          628 a          596 c          619 g          572 t
ORIGIN      
        1 tcacgggaca ggtcaatcaa tggagctccg aatgatgtga gggcagcgat aactcggtca
       61 gcattgttct tttcagggcg aatccaaacg tcgagatctt tggtagcacg cacatgtccg
      121 tacacagcca atgcgtgagc gcctaccagt agatactcaa cgttcgcggc gttgaaggcg
      181 agtaatagtt ctctgaagtc ggggctcatc ggtttggtac ccagcccagg ccatacaaat
      241 tttggttagc gtccacactg cttcaatccg ttccgccggc gttgattctt tccaatcttc
      301 gtccattggc tcttcgccac ctcgaatgag tctgacgctg atcgattttg gttgctgctt
      361 ggaaaccatg tctctttgta gatatcacta tcaacaccga attgacacgc gctgatcttc
      421 gcgcagctgt tgtgcattcg gcaagagcaa tcctcacgaa acaaatggat agaacggagt
      481 gtttcgaaag atccaaaacg agactacgac cacgaagatc aggtagatgt aggcggccgg
      541 caaagcgttt gggcgtggag tctttccttg aaatgaaaga gccgtatgac gaagcaggag
      601 acagaacaaa atcggaagag caataacaaa cagcgggttc aacatgaaag cagcctgtat
      661 gtggccgtga agaagttgat gcaacgcgcg cgtacttccg cagccgggac aagtgatacc
      721 agtgaagaaa cggaacggac agccgggaaa gaaaccgttc ttacccggct caaacgaaaa
      781 caagtagacg gccccggcga tcagtgcgcc ccagatcgcg atcacagtga cacgacgata
      841 ccaaaactca tgctgcatgt gagtctaagg ctatcacgag aattaggagt tttgcctcga
      901 cctcgagaaa gaaaagagga gggctggtgt tagaaccagc ccttccgacc ttgaatgtac
      961 gttcgcacaa actcttcatc tgacttggtg aggtagatga tgccttcgat gataccgatg
     1021 atgttggtga gaccacaggt aagcacaccc aggatcaact ggatgatgcc ttcggttgag
     1081 tagccgagga tgaatttgtg aatacccagc cagccaagaa ggatcgcgca gatacctgcg
     1141 gtgattttct tgtcggcccc cattgccttc cagtctgtga tcgctcctgc gttcacggac
     1201 tgcatgggtt gatagccacc actgacaact ggagtgagcg gcgtctggca ggtggaacag
     1261 aactgcgcca ggtcgtcgtt cacggcaccg catttagtgc aatatctggt catctttttt
     1321 tggggtctcc gcgtcttcga tgattgaggc tagctcaaaa acgaagactg tgggttgtta
     1381 attctgctct caggaattca tcattgctgc accaccgatg atcacccaga agatcaggta
     1441 gcatgcccag cccgcgattc ccagaccgat tgcgatgaag ctaaatagtt ttgctttctt
     1501 ggaagcatcc acagctcctt gaagatcacc ggccgcgact ttcccgttta cctgtgctgc
     1561 gaaaatcacg cccacaatgc ccaaaggcaa gcagcagaaa atcgaaataa tcgctgggat
     1621 taaatagttg ggtacgcttt ccgtggcacc cgctgcgggt gggggagtcc attcttgtga
     1681 cattcctttt tctcctgatc cagacttggt tttttgaaag agcagttaat tgatcaccgg
     1741 catcgtcaat ctgatttacg ccgcatagcc acccgctggt ggcgctggag gtgtcagatc
     1801 gccttttcgt ttttcgaaaa ttggtacgcc tagtagtcca ccgataattg caaaaacaaa
     1861 caacaagatt gcgccgatga ttcctcttcc gatggcactc gcgactgatt gagcagccat
     1921 ctgagcgcgc atcatctcag cctgaccagg gttggcattc tcaactaacc ttagcagtac
     1981 ttcatttaca gccgttccaa tcagaagact gaccggaatg ccaatgacta ttgcgattgc
     2041 cccaccgacg agaccggcaa aaactcctac gagggcgccg tctcccgccg tagccggagt
     2101 tggagagttc ttaatgtaaa gatatgaagc cagcatgccg ccgaggatcg cccagagaca
     2161 acagcagaag tttacccagt tgatgaatgg aatgacggaa agtaggccta agactactcc
     2221 cccgattagg gcaggcttca gtttgttatt cattagattt gcactcttcc gctaagaaag
     2281 ttggcacagg ttaagtatta gatcttttga agcaggaatg agctcggttc acttgaataa
     2341 ctaacaaaca ggggcgggat tgtcaataaa attgccgata tttgttgggt tgaattagcg
     2401 gataacttga atgcg
//
LOCUS       DATCGC010000922         4147 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_112243, whole genome shotgun sequence.
ACCESSION   DATCGC010000922 DATCGC010000000
VERSION     DATCGC010000922.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4147
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112243"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1150)
                     /locus_tag="VIJ87_08950"
     CDS             complement(<1..1150)
                     /locus_tag="VIJ87_08950"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEY5444576.1"
                     /translation="MQTETKHLVRGLGLTAAIAVNVANIIGTGVFLKARVMTCNVGTP
                     GKALGVWVFAGLLALAGGLTYAELLAMKPKDAGEYGIVRDAYGRLWGFLYGWTQFLIA
                     RSASAAALAVGFAIFLNDFVGGSLKHVYFSLTLPGGHVVDFGRLQLIALTAILITTLI
                     NCAAVSVSGNFATVLTVLKVAVLIGVGVGAFVYSGGDWSHLSQANVNGTCEGVAVTTG
                     GLAGLSAAMLGALWAYDGWNNVAFMAGEVKRPERNLPLALITSMLVVMGIYVFINISY
                     YHVLSPTQIASIPASSSTAAEVVRRLLGSAAVTLMAAAMMTSSFGALHASILATARVP
                     YAMATDRLFFKGLAKLSGTHVPVRSLIVLAIWSSVLALSGSYDTLTDYA"
     gene            complement(1382..1588)
                     /locus_tag="VIJ87_08955"
     CDS             complement(1382..1588)
                     /locus_tag="VIJ87_08955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="four helix bundle protein"
                     /protein_id="HEY5444577.1"
                     /translation="MAKVKRFEDIQSWIKARALAKDIYDATLVGSFAKDFALKDQMRR
                     TQFQFFPTSRKGLNEVATKSSFSS"
     gene            complement(1665..3101)
                     /gene="lysA"
                     /locus_tag="VIJ87_08960"
     CDS             complement(1665..3101)
                     /gene="lysA"
                     /locus_tag="VIJ87_08960"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: protein motif:HMM:TIGR01048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008836 - diaminopimelate decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HEY5444578.1"
                     /translation="MSSGIAAECPAWSIPGYLEVRNGHLVINGVDAIELVKEFKSPLF
                     VFSEGRIRDNINRLKRAAETVDRPIKFCYASKANSNMAILKAVLDSGIDCEVNSGGEL
                     FKALRIGFKPEQIIFNGTSKSDDEIDEAVRAQIYAINVDSIYEIDLVEQSVLRLRAGG
                     ENVPPARVTLRLVPEIGTRSHLGLQTALLTSKFGISSSEVLSAFRRGLKNPDLVNVCG
                     IHIHVGSQTPDVEPFAEAFKSMWEHLMVIHRETGHTLEHINLGGGIPVNYLRDRTQAD
                     QLPEHERDMLGADLEPSAVLTEAMRVARESARAANAEHLLDQVTILLEPGRSVIADAG
                     LVLTTVNNIKTRPETGDVWLLTDAGYNIMLSMNNYKWYYHLISASRANEPYGHDYKVA
                     GPLCDSGDVYFDIEREGRLPDYRRLPENVGPGEVLALLNCGAYSLAQMFHYNGRPLPA
                     AVLIKLDGKPEMIRRRDTYDDLITNDVW"
     gene            complement(3617..>4147)
                     /locus_tag="VIJ87_08965"
     CDS             complement(3617..>4147)
                     /locus_tag="VIJ87_08965"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEY5444579.1"
                     /translation="KPVDQPNVASTEEPQVQEEIASSTGQSQKPQRVDDRRVSPEGGA
                     NNAKNVQGSLNTDENNTESGSGTAQANQQPNQTQQQGNQKRPPISGGMLNGKAIYMPL
                     PEIPPGEKAGGVVMVQILVDEQGTVIDARAVSGPPGLHASAVNAARFARFSPTMLMGE
                     PVRVQGTLAYNFAKAN"
BASE COUNT          992 a         1071 c         1080 g         1004 t
ORIGIN      
        1 tcgcgtagtc agtcagcgtg tcgtacgaac ctgacaacgc caacacactc gaccaaattg
       61 cgagcacaat cagtgacctt acgggcacat gtgtacccga caacttcgca agtcctttga
      121 agaacaaacg gtccgtcgcc atcgcgtaag gtacacgtgc tgttgccagg atcgaagcgt
      181 gaagcgcgcc gaacgacgac gtcatcattg ccgctgccat caatgtgaca gccgctgaac
      241 ctagcaaacg tcttacgact tccgccgccg ttgaagacga cgcggggatg ctcgcgattt
      301 gagtcggtga tagcacgtgg tagtaactga tgttgatgaa aacatagatt cccatcacca
      361 ccagcatgct ggttatcagt gcgagtggaa gattacgttc cggacgtttc acttcgcccg
      421 ccatgaacgc cacgttgttc cagccgtcat aggcccacag cgcaccaagc atcgcggctg
      481 agaggcctgc cagtcctccg gtcgttacgg cgacaccttc acaagttcca ttcacgtttg
      541 cttgtgagag atgactccag tcaccgccgc tgtaaacgaa agctccgacg ccgacgccga
      601 tgagtacagc aaccttcagc acggttaaca cagtcgcgaa gtttccgctg acactaactg
      661 ccgcgcaatt aatgagtgtc gttatcaaga ttgccgtgag cgcgattagt tgcagtcgtc
      721 cgaaatcaac aacgtgaccg ccgggtaaag tgagcgagaa gtagacgtgt ttgagtgatc
      781 cgccaacaaa atcgttgaga aaaatcgcaa agccaacggc taatgcagca gctgacgcag
      841 atctggcgat gagaaactgc gtccacccgt aaagaaaacc ccacagtcga ccatacgcat
      901 cgcgaacgat cccgtactcg cccgcgtcct tcggcttcat cgcaagcagt tcggcatagg
      961 tgagaccacc ggccaatgcg agcaatccgg caaacaccca gacgccgaga gctttgccgg
     1021 gcgtgcctac gttacacgtc atcacacgcg ccttgagaaa cacgccagtg ccgatgatat
     1081 tggcaacatt aacagcgatg gctgcggtta gaccgaggcc acgaacgagg tgtttagttt
     1141 cagtttgcat gcgggaagaa gtccaaggtc caaagtccaa agtccaaagt cggtatttgt
     1201 taccgaagct tgctgccgcg cagatcggat tgcttaaggt acttcatgaa acccgaaata
     1261 agttgactga tctctgttgc ttgttgacag agagcgtcaa aggtttggtt tgaaagatag
     1321 ttctgatcaa gcgctacata gagttgtgct cgtaactcgc cagccgaacc cttcgcaatg
     1381 gctaagaact gaatgaactc tttgtcgcca cctcgttcaa acccttccgc gatgttggaa
     1441 agaattgaaa ctgcgtccgt cgcatttggt ctttcagagc aaagtctttg gcaaatgatc
     1501 caacgagtgt tgcgtcataa atatccttcg ctagggcgcg agcttttatc caagattgaa
     1561 tgtcttcaaa gcgcttaact tttgccatat atccacctcc taagtggtga gaagtgaggt
     1621 taacttcaga gacgttggac tttggacctt ggactttgga ctcattacca aacgtcgttc
     1681 gtgattaagt cgtcgtaggt gtcgcgcctg cgaatcattt ccggcttgcc gtcgagcttg
     1741 attagcacgg ctgcaggtag cggacgtccg ttgtaatgaa acatctgggc tagcgaataa
     1801 gcgccacagt tcaataacgc caacacttca cccgggccaa cgttttcagg taggcgtcgg
     1861 taatcaggca aacgaccttc acgctcgatg tcaaagtaga catcacccga gtcgcaaagt
     1921 gggccagcaa ccttgtagtc gtgtccatag ggttcattag cgcgcgacgc cgagatgaga
     1981 tggtagtacc acttgtaatt gttcatcgag agcatgatgt tgtagccggc gtcggtaagg
     2041 agccagacat ctccggtttc gggacgggtc ttgatgttgt ttactgtagt taacaccagt
     2101 ccggcatcgg cgataacgct ccgaccaggc tcgagcagga tcgtgacctg atccaaaaga
     2161 tgttctgcgt tagctgctcg cgcagactct cgcgcaacgc gcattgcttc ggtcaacacc
     2221 gctgacggtt cgagatcggc gcccaacatg tcccgctcat gttccggcaa ctgatcagcc
     2281 tgcgtgcgat cgcgtaagta gttaacagga atcccgccgc caagattgat gtgttccagc
     2341 gtatgacctg tctcacggtg aataaccatc aagtgttccc acatactctt gaaggcttct
     2401 gcgaatggtt ctacgtcagg tgtttgtgaa ccaacgtgaa tgtgaatgcc gcacacgttg
     2461 actagatccg gattcttgag tccgcgacga aaggccgaca acacttcgga cgaggaaatg
     2521 ccaaacttcg aagttagcag tgcagtctgc aagcccagat gtgagcgagt gccaatctca
     2581 ggcacaagtc gcagcgttac tcgcgcaggt ggaacatttt caccgcccgc gcgcaaccga
     2641 agaacagact gttcaaccag atcgatttcg taaatcgagt cgacgttgat ggcatagatc
     2701 tgtgcgcgta ccgcttcgtc aatttcgtcg tctgacttgc tggttccatt gaagattatc
     2761 tgttcgggtt tgaatccgat gcgcagtgct ttgaagagtt caccaccgct gttcacctcg
     2821 caatcgatcc ccgaatcgag cacggccttt aggatcgcca tgttcgaatt tgctttggag
     2881 gcgtaacaga acttgatagg ccggtcgaca gtttcagcag cgcgttttag gcgattgata
     2941 ttgtcgcgaa tgcgaccttc agagaaaaca aaaagcggcg acttgaattc tttaaccagc
     3001 tcgattgcgt cgacaccgtt gataacgaga tgaccattgc gtacttccag gtacccggga
     3061 attgaccagg ccggacactc tgcggctatt cctgatgaca tgtttgaata ccactccagt
     3121 tagtgattat gaaaattcga gcgaagatag actgtggttc agatctggtc aagcagggcg
     3181 cggaataaag tccgataagc tttagcttgt cgttgacttt agatctagaa ccatcaagtg
     3241 gattgtggcg atctcagtaa agtcagcgac atggtaattt agcctgtcgt cgtcatcgac
     3301 catggaagaa cgcagatgat aacgacaagc taaagaggct cttgcaaaat tccacaaacg
     3361 gcagtttgtg gatacttcaa atccagcctg ttagggcaag caaacccaat ggcgaacgtt
     3421 gtctcagggt ctacactgtc ccgcagaagg ttggacttga acaaatccac aaattgccgt
     3481 ttgtgagatt caattccttt gcgcgcgact gttgaatagg ttggtcttga atcatctcca
     3541 aactgccgtt tggaggattg cgcttccttt cctgtgttcc tgacttttgc aagaggctcg
     3601 acaccatatc ggagcgtcag tttgctttgg cgaagttgta ggcgagcgta ccctggactc
     3661 gcacaggttc acccatcaac atggtgggtg agaatcgtgc gaaccttgcc gcattcaccg
     3721 cggatgcatg caatcccggc gggcctgaaa cagctcttgc gtcaataaca gttccttgct
     3781 catcaacgag tatttgcacc atcacgactc cgccggcttt ttcgcccggc gggatttcag
     3841 gcaaaggcat gtagatcgct ttgccgttaa gcattccccc ggagattggc gggcgtttct
     3901 gatttccttg ttgttgcgtt tggtttggtt gttgattcgc ctgagcagtg ccggagccag
     3961 attcagtgtt gttctcgtcg gtattgaggc taccttgaac gtttttggcg ttgttggcac
     4021 caccctccgg tgagacacgg cggtcgtcca ctcgctgtgg tttttgcgac tgaccagttg
     4081 aagacgcgat ctcttcttgt acttgcggct cttcggtaga agcgacgttg ggttggtcga
     4141 caggttt
//
LOCUS       DATCGC010000923         3560 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_379283, whole genome shotgun sequence.
ACCESSION   DATCGC010000923 DATCGC010000000
VERSION     DATCGC010000923.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3560)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3560)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3560
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_379283"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..643)
                     /locus_tag="VIJ87_08970"
     CDS             complement(<1..643)
                     /locus_tag="VIJ87_08970"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY5444580.1"
                     /translation="MDFTTKELLKRYAKLAIGQPFSPILLNILVTSVCDMRCTHCFFT
                     DELDDRPRKKLQMKTHEIERISETLGGNLGVLIVAGGEPFTRKDLPEIANAFYRNNQL
                     ESIYLMSNGQIQKRIFPDVTRILQECPNLNVTIALGIDGPKAEHEKIRQKAGSWDIAI
                     DTARQLQAIKKEYPRLDVQTCTCFMNSNQDTIFEWYDFLKYDLKPDKVNFNYIR"
     gene            complement(1014..1244)
                     /locus_tag="VIJ87_08975"
     CDS             complement(1014..1244)
                     /locus_tag="VIJ87_08975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444581.1"
                     /translation="MESALPLLVGLDFFERISEVVSDVVESTSGYLDVQFDVPTGGAF
                     RVMDVIVVEAPRFNEGSLRDASDARRQVADLH"
     gene            complement(1907..2953)
                     /locus_tag="VIJ87_08980"
     CDS             complement(1907..2953)
                     /locus_tag="VIJ87_08980"
                     /inference="COORDINATES: protein motif:HMM:NF033542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEY5444582.1"
                     /translation="MTVYIGVDFHARQQTISYLTTEEGAIQHLVLLHDNPVTVRAFYA
                     QFAGQRVVVGFESSGYAAWFEELLEELGCELWIGHATYIRQFAKRRQKNDRRDADLIL
                     ELLHTGDFPRIHRYSRTTREMLQQLRYRQRLVKMRTMAMNMLLFMASSRGVSLRTQLQ
                     SKRGQAKLQQLALPATLGTQRDELLSLLQTLNEKISTIERWLEQQTKADLAVQRLQTH
                     PGIGLLTSICLRYTLEDAGRFANTRKVSAFAGFDPMQDQSDERNRMGAISKQGSRWLR
                     FYLVEAGQVAIRKDADLQRVYQRVARRGGHAKAKVAVARRLLVRAFIMLRDEIDYAEF
                     QRRGVAARSSRGTA"
     gene            3184..>3560
                     /locus_tag="VIJ87_08985"
     CDS             3184..>3560
                     /locus_tag="VIJ87_08985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444583.1"
                     /translation="MKLSLLLVALVFMISIPAHKNGLLLVANKGDQSLSIIDAGSGEQ
                     LATVPEGGVTGHEVVASPDGRFAYVPIYGNSGVGRPGTDGQRIAVIDLSTKKVTGEVD
                     FGHGVRPHCAVFGPKSGLLYVTT"
BASE COUNT          823 a          940 c          926 g          871 t
ORIGIN      
        1 gacgtatgta gttgaagttg actttgtcgg gcttcaaatc gtacttcagg aagtcatacc
       61 actcgaagat cgtatcctga ttcgaattca tgaaacaggt acaagtctgc acatctagtc
      121 gcgggtattc cttcttaatg gcttgaagct gacgcgcggt atcgattgca atgtcccagg
      181 atcctgcctt ctgacggatc ttctcgtgtt ctgccttggg tccatcaatt cccagggcga
      241 ttgttacgtt taggtttgga cattcctgga ggatcctagt gacgtcagga aagattcgtt
      301 tctgaatctg accattggac atcaggtaga tcgactcgag ttggttgttc ctatagaagg
      361 cgttggcaat ctccggcaga tcttttctgg tgaaaggctc gccaccggca acaatcagaa
      421 cgcccagatt accgccaagt gtttccgaga tccgctcgat ctcatgggtc ttcatctgga
      481 gcttcttgcg cggtcgatcg tcgagctcgt ccgtaaaaaa acaatgagtg cagcgcatgt
      541 cacaaacgga cgtgacaaga atgttcagca agatcggcga aaagggctga ccaatcgcca
      601 gctttgcgta acgtttaaga agctcttttg tcgtgaaatc catctatccc tcaacttcat
      661 tctcgctaaa caaaaaaaac gcgagagtct tacagataag ctatttaagt cagcattgtc
      721 aacgtaatgt ctgatgtagg gttagagatg gatagttgca atgaattgag tgtggacgct
      781 ttgctagaga ccgttttcga agaggctttg atgatgcggc tttgccgcct cgcgtgcgga
      841 aagcctcggc tttccgttcg ctcttagaaa ggcggagagg cttcgcctcg ggccgcctag
      901 ccgccaaaat gtttgtgagc ttgacggaaa gccggagact ttcccgacgg gaagcggcaa
      961 agccgcataa ccaaaatgcg gtgttgacgg tgacctattg gctttggagt taattaatgc
     1021 agatccgcaa cttgccttcg ggcgtcgcta gcgtctcgaa gactcccctc attgaagcga
     1081 ggcgcctcaa caacaatgac gtccataact ctgaaagcac cacctgtagg tacatcaaac
     1141 tgcacatcca gataaccact cgtgctttcg accacgtccg aaactacttc actaattctt
     1201 tcgaaaaagt ccaaacccac taacaaaggc agcgccgatt ccaaagatga ttagccattt
     1261 cgaagcacgc cttggacgca cttcgggcgc aagaatcgaa accagtctaa ttggagctgt
     1321 gacagagtgg tccgtatgag tcaccgaact ctcgggcgtg aggagattca ttctcgttgc
     1381 tcctcgaagc gattggtttt ttttcgaaac ggaggttgtc ggtacaacaa cctcttcctg
     1441 actagggcca agtgacaata tcgattgtat atagaaagtc ggtcatggtt gtgtaaagtt
     1501 ttgtcaagct ttcgacgatc ccctcttacg acgatcccct ttagtagcta cttgggacaa
     1561 gacgatgcgc tcttctggga ccgcatctat gaagcgggct ccgagtgtca agagaaaaaa
     1621 gcaaacttct ccgagggcgc cccggaagag ctaaagggcg tcgcggacta gctgatgctt
     1681 ttggttgcgg gtgcatgagc tgcgatagca ataagatggt agagctaggt atttctggct
     1741 gaccgttttt gtttttagtc ttgcgtggtg gcagttgcac tcagtgtcga gtagcgaatg
     1801 acgcgttcaa tcatctctgc gagcactatg gctcatgagg atcgataggc tctttcttcc
     1861 gtttgaagaa aggctggtct cccaatcagg cgacaagcat ggtagcttac gcggtccctc
     1921 gggaagaccg agctgcgacg ccacgtcgtt gaaactcggc atagtcaatt tcatcacgca
     1981 gcatgatgaa agctcttact aacaggcgcc gggccaccgc cactttagct ttggcatggc
     2041 cgccacgccg tgcgacgcgc tggtaaacac gttgcaggtc ggcatcttta cgaatcgcta
     2101 cttgaccagc ttccaccaaa taaaagcgta accagcgtga accttgtttg ctgatggccc
     2161 ccatccgatt acgctcgtcc gattgatcct gcatcggatc gaagccggca aaggcgctta
     2221 ctttcctggt gttggcaaag cgtccggcgt cctcaagcgt atagcgcagg cagatgctgg
     2281 ttaacaaccc aatgccagga tgcgtctgca gtcgttgcac ggccaggtca gccttggtct
     2341 gctgctccag ccaccgttcg atcgtgctga tcttctcatt cagggtctgc agcaaactta
     2401 atagttcgtc tcgttgcgtg cccaaggtgg ccggcaaagc tagttgttgt aacttcgcct
     2461 ggccccgttt gctctgtagc tgcgtccgca gactcacgcc ccgactgctg gccatgaata
     2521 acaacatgtt catggccatg gtgcgcatct tcactagtcg ctgccgatac cgcagttgct
     2581 gcaacatctc ccgggtcgtg cggctatagc gatggatgcg cgggaagtct cccgtgtgca
     2641 gcagctccag aatcaaatca gcatcgcgcc gatcgttctt ctgccggcgt ttggcaaact
     2701 gccgaatgta agtggcatgc ccgatccaga gctcgcagcc tagttcttcc aatagttctt
     2761 caaaccaggc cgcataaccg ctgctctcaa agccgactac tacccgctga ccggcgaact
     2821 gcgcgtagaa agcacgcacc gttaccgggt tgtcgtgcag taggaccaag tgttgaatcg
     2881 ctccctcttc agttgtcaaa taactgatcg tttgctggcg cgcgtgaaag tcgaccccga
     2941 tatatactgt catgggcgtc tccttctgct atcgcagatg cacacccgtt agtctaacaa
     3001 ctaacggtag gagccgcccg cttcataaca tcaggcgtcc tcgcctgcat tcgtcgccac
     3061 tgggtatccc ttactgaacg gtaagcaggc gaggacgcct gcggtcccag aagagcgcgc
     3121 ccattagttc agaggcgtca ctgaggggtg acgatactca aacgaagtcc tagaatgacc
     3181 attatgaaac tcagcttact gcttgtagcc ctcgtcttca tgatttctat cccagctcac
     3241 aaaaacggat tattgctggt cgcgaacaaa ggcgatcaga gtctgagcat catcgatgcg
     3301 ggctcgggtg aacagcttgc gacggttcca gaaggtggtg ttactggcca tgaagttgtt
     3361 gcatctcctg atggtcgctt cgcttatgtt ccaatctacg gcaactcggg tgttgggaga
     3421 ccaggcaccg acggccaacg aatcgcagtg atcgacctct caacaaagaa ggtcacgggc
     3481 gaagtcgact tcgggcacgg cgtacgtcca cattgcgcgg tgtttggtcc aaagagcggc
     3541 ctgctctatg tcaccaccga
//
LOCUS       DATCGC010000924         1017 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_411605, whole genome shotgun sequence.
ACCESSION   DATCGC010000924 DATCGC010000000
VERSION     DATCGC010000924.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1017)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1017)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1017
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_411605"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(162..425)
                     /locus_tag="VIJ87_08990"
     CDS             complement(162..425)
                     /locus_tag="VIJ87_08990"
                     /inference="COORDINATES: protein motif:HMM:NF025392.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4242 domain-containing protein"
                     /protein_id="HEY5444584.1"
                     /translation="MPVYMVERSLPGIEMDQLAAAQKAAIETSNKFTAEGKDVRYIRT
                     TFVPGEAHCMCLFEAPNPDVVKEVNETAQIPFTRIVEALDLTP"
     gene            complement(503..991)
                     /locus_tag="VIJ87_08995"
     CDS             complement(503..991)
                     /locus_tag="VIJ87_08995"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY5444585.1"
                     /translation="MSTPKLTVQIRVADDTDAERLTKLINVAFRCAEQFFVEEDRIDQ
                     ATVQSLLVTGEFLIAEVNEAMVGTVYLEPRGDRMYLGLLSVDPSIQQTGFGSQLMSAA
                     EDHSRARDSRFIDILIVNLREDLPAFYQKRGYVETGTSPFPTEIKTKLPCHFINMSKA
                     LS"
BASE COUNT          241 a          260 c          236 g          280 t
ORIGIN      
        1 cccccgctgg ttctggtcaa agcttctgat cttgaaaagc ttgatatgaa ccagccgggg
       61 taaaccgccc ttcctaactt gttctgaatt ccaatctctt tttccccgtc ctgatttttg
      121 caagaggttc caaagcagat cggacattcc gaggtacctt actacggtgt caggtccaat
      181 gcttcgacaa ttcgcgtgaa tggtatttgc gcggtctcgt tcacttcctt caccacgtcc
      241 ggattcggag cttcaaataa acacatgcag tgtgcttcgc cgggcacaaa ggtagttcgg
      301 atgtagcgca cgtcttttcc ctcggcggta aatttgttgc tggtttcgat cgcagccttt
      361 tgagcggccg ccagttgatc catttcgatt ccaggtaaac tacgttcgac catgtagact
      421 ggcataaggt tctccttaga ttctgaactg gaacgattaa caggtgggtt gaattctact
      481 cctcatcgtt tgtacaagca cctcaactta gcgccttaga catattgata aagtggcagg
      541 gaagctttgt tttaatctca gtgggaaatg gtgaagtgcc cgtctcgaca tacccacgtt
      601 tctgatagaa cgcgggcaag tcctctctca ggttaacgat cagaatatcg ataaatcgtg
      661 agtcccgggc gcgactatga tcttcagccg cggacatcaa ctgcgatcca aaccccgttt
      721 gttgaataga tggatcaact gagagaagcc cgagatacat tcgatcaccg cgcggctcga
      781 ggtagacggt tcccaccatc gcctcgttca cttcagcgat aaggaattca ccagtaacca
      841 gcagagactg aacggtggcc tgatcgatgc ggtcttcttc gacgaaaaac tgctctgcac
      901 atctaaaagc aacattgatt agtttagtaa gtctttcggc gtcggtatca tccgccactc
      961 gtatctgaac tgttaacttt ggtgtactca tttagcctgg aggttccagc tacctta
//
LOCUS       DATCGC010000925         1539 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_279030, whole genome shotgun sequence.
ACCESSION   DATCGC010000925 DATCGC010000000
VERSION     DATCGC010000925.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1539
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_279030"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            282..1331
                     /gene="glpX"
                     /locus_tag="VIJ87_09000"
     CDS             282..1331
                     /gene="glpX"
                     /locus_tag="VIJ87_09000"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: protein motif:HMM:TIGR00330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042132 - fructose 1,6-bisphosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphatase"
                     /protein_id="HEY5444586.1"
                     /translation="MGHELRTERELSLDFLRVCEAAAIAAARTMGQGDRKYSDHVAVE
                     AMREVMDTVPMRGRVVIGEGERDEAPMLYIGEEVGGGFGVGEEMAGSCPEVDIAVDPL
                     EGTNLCALGANNAIAVLAAAERGGLLNAPDIYMDKIVVGPSSRGVVDIDAPVKDNLKN
                     IARRLGRDIEDLTVIVLERSRHRKLIADVRETGARIRLISDGDLSAGISAAVAGTNIH
                     ALMGIGGAPEGVITAAAMKCLNGEIQARLVFDAEKLGVDKDKVPSREEVLGRLDSMGI
                     ADPNKIYDTDDLAPGKKIIFAATGVTDGALLKGVRFFGAGKRTHSLVMTTESRHIRFV
                     DTLHIEGGPDTVIRF"
BASE COUNT          363 a          346 c          439 g          391 t
ORIGIN      
        1 gtctattggc cgagggccac aaataagttt tcaagggact tgggcacttt ttgtgcgaag
       61 ccgtttggtc tattcggcgt ggatactttg tttgactagg agtcaaaagt gacccaacga
      121 aatccaacta aaaccctgca tcaaaaggca aactccaaac ttaagagacg ctacaatttt
      181 gaatgaccgt ctgctagtat gaccccgcat ttcttcatcg ccgagcaagg ggattattcc
      241 cgctaagtag ttgaacttcc cgaatcagga gagctgaacg tatgggtcac gagttgagga
      301 cagagcgcga gctatctcta gacttcctgc gcgtttgtga agccgctgcg attgctgccg
      361 ccaggaccat gggtcagggc gaccgtaagt attctgatca tgttgctgta gaagcgatgc
      421 gcgaagtcat ggacaccgtt ccaatgcgcg ggcgtgtcgt gatcggtgag ggtgagcgag
      481 acgaagctcc gatgctgtat atcggcgaag aagtcggtgg cggatttggt gttggtgaag
      541 aaatggcagg gtcatgtccg gaagtggaca ttgctgtcga tcctcttgaa ggcacgaatc
      601 tctgtgcgct gggtgccaat aatgcgattg ctgtattggc ggctgctgaa cgaggcggac
      661 tcctaaatgc tcctgatatc tacatggata agattgtagt cggtccttct tcgcgcggcg
      721 tcgtggatat tgatgcgccg gttaaagaca acctgaagaa cattgctcgc cgtttggggc
      781 gcgacatcga agacctgaca gtcatcgtgc tggagcgctc gcgacacaga aagctaattg
      841 ctgatgttcg tgaaacaggc gcacgcattc gtttgatttc cgacggcgat ctgtcggccg
      901 gtatttcggc agctgttgct ggcacaaaca tccacgcgct aatgggtatc ggcggcgcgc
      961 cggaaggtgt gattactgcc gcagcaatga aatgtttgaa tggtgagatt caagcgcggt
     1021 tggtgtttga tgccgaaaag ctcggtgttg ataaagacaa ggtgccttca cgcgaagaag
     1081 tgttgggtcg tttggattcg atggggatcg cggacccaaa caagatttac gatacggatg
     1141 atcttgcgcc aggaaagaaa attatctttg cagccacggg tgtcactgat ggagcgctat
     1201 tgaagggtgt tagattcttt ggtgcaggga agcgcactca ttctcttgtg atgacgaccg
     1261 agtcgcgtca tatacggttt gtcgacacgc ttcacattga aggtggcccg gacacagtaa
     1321 tcaggttcta agactgatgt ccgatatgct ttagcttgtc gttgtcgcct gagaagcatt
     1381 atgtggagca cgacgacaag ctgaagcatg tcggacattt tcaaagcaat gcgtctttcc
     1441 atcaccgaat acatccctca aactgacaac tctcgtcgac cccttttgat ctggctctta
     1501 accgtaggag ttgcgtttac aattctcacg ctaattgtt
//
LOCUS       DATCGC010000926         2123 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_146605, whole genome shotgun sequence.
ACCESSION   DATCGC010000926 DATCGC010000000
VERSION     DATCGC010000926.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2123
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146605"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            232..1086
                     /locus_tag="VIJ87_09005"
     CDS             232..1086
                     /locus_tag="VIJ87_09005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444587.1"
                     /translation="MTQYNWQIACTASANVLSKPTMFNLPLQTDSGQWKIILEKIVAP
                     SPTGCLPRPRLEALLNQSLRSCSATVLSGRAGSGKTTLAIAFSEKSARSVAWYKVDAP
                     ESKLEVFFGYLISSIRAQRPAFGGYALLSLLQPDPDLSQISHLAEVFVFELERYSDTP
                     LLLVVEDLHLVCDADWVVPFFKRLLPLLPADVHMLITSRTLPPAPLWRMRSKQTLSVI
                     DEETLSFTRDEAIRLYEQYGLSREQASIAFDHSHGRAAALSSLAATLHFAETELMKEV
                     PAQQIKVG"
     gene            1216..>2123
                     /locus_tag="VIJ87_09010"
     CDS             1216..>2123
                     /locus_tag="VIJ87_09010"
                     /inference="COORDINATES: protein motif:HMM:NF024793.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY5444588.1"
                     /translation="MSPKPRQGDPPATSSTADAPDVRPGFFLRTKLLLPRPAPELLSR
                     PRLTDRLITNLTNPLTLVTANAGSGKTTLVADFLRTHDRQFVWYQLDHTDTDPFVFLG
                     YLTFGIQQIVPNFGNALFAYLKESSGELAQNPERAVDVLINEVLESVEQQLIVVLDDY
                     HHLGQDTPVHALLDRLLAYLPDVLHVVMISREMPPLALARLRSQSPSSVIDRADLLFT
                     DQETRELFRKVFDLEPTSEQLAEYRERTHGWITALQLVRQVAQKTVTNLSDGTPDLAE
                     VLRQSERDIFDYFAEEVFSNEAEEVQA"
BASE COUNT          499 a          568 c          510 g          546 t
ORIGIN      
        1 tttcagatct cagatctgca ctgcgctcaa cccaaactcc agttagttag tcacagtaca
       61 gtcaaaggtc ccactggcag tcaaatctga gatctgagat ctgagatctg aaatttgaga
      121 tttgagattc gattttgctc cgtttaaaac ctcaagaatt tctcaagggg actgcaataa
      181 aacattcctc gtaactcggc tcgcccaaat ctagcgttac ttcaagggga aatgactcaa
      241 tacaactggc aaatcgcttg caccgcgagc gccaatgtcc tcagcaaacc gacgatgttc
      301 aacttgccac tccaaacgga ctcaggtcag tggaagataa ttctcgagaa gattgtggct
      361 ccgtctccga ccggatgtct gccaagacct cggctcgaag cactcttgaa ccagagtctt
      421 cgttcctgct ctgcgacagt gcttagtggg cgggcaggtt ccggaaagac gacgctggcc
      481 atcgccttct ctgagaagtc cgccaggtcg gtcgcctggt acaaggttga cgccccggag
      541 agcaagttgg aagttttttt tgggtatctg atttctagta ttcgtgccca gcgacctgcc
      601 ttcggcgggt atgccctctt gtcgctactt cagccggatc ccgatctcag tcagatttca
      661 catcttgcag aagtctttgt ttttgaattg gagcgatact cagatactcc attgttactt
      721 gttgtcgaag acctgcacct ggtttgcgat gcagattggg tcgttccttt cttcaagcgt
      781 ttacttcctt tgcttcccgc ggacgtgcac atgctgatca ctagtcgaac tttgccgccc
      841 gcacctctct ggcggatgcg ctcaaaacaa acgctttccg ttattgacga agagaccttg
      901 tcatttacca gggacgaggc aatcagactg tatgagcaat atggattgag tcgagaacaa
      961 gcaagcatcg cgtttgatca ttcccatggt cgagcagctg cgctttcgag tttggcggcg
     1021 acgcttcact ttgcagagac ggagttgatg aaagaggttc ccgctcagca aatcaaggtt
     1081 ggataagttg tttgtatgga agttgtgcag gtcaaaaacg tagacgtccc tggtcattcg
     1141 gagcaaagta gaatgtcggg attccgctat gctaatctcc ggcaattcga acgcagggcc
     1201 cagaggcaca tggtaatgtc gccgaaaccc cgacaaggtg atcctcccgc aacttcgtcc
     1261 actgctgacg cgcccgatgt gcgaccgggt ttctttcttc gtaccaagct attactcccc
     1321 cgaccagcgc ctgaacttct ctctcgccct cgtctcactg acaggctcat aacgaatctc
     1381 accaatccct taactctcgt tactgcaaat gcaggctcag gcaaaactac cctggttgct
     1441 gattttttac gcacacatga cagacagttt gtctggtacc agttggatca cacggataca
     1501 gatccattcg tattcctcgg gtacttaacc tttggcattc aacaaatagt tcctaacttt
     1561 gggaatgcct tgtttgctta tttgaaagaa tcgtcgggcg agttggccca gaacccagaa
     1621 cgcgccgtcg acgtgctaat caacgaagtc ctggaaagcg tcgagcaaca gctcatcgtg
     1681 gtccttgacg actaccacca cctcggtcag gacactcccg ttcatgctct attggatcga
     1741 ttacttgcgt atctgccgga cgtgttgcac gtggtaatga tctcccgtga aatgccgccg
     1801 ctcgcattag cccgtctacg ttcgcagtcg ccctcatcag taatcgatcg tgctgacctg
     1861 cttttcaccg accaggaaac gcgcgagttg tttcgcaaag tctttgattt ggaaccaacc
     1921 agcgagcagt tggctgaata tcgcgaacgc acgcatggat ggattactgc tttacaactc
     1981 gtccggcaag ttgcgcaaaa aacagtaacc aacttgtcag atggcacacc cgatctggct
     2041 gaagtactgc gtcagtctga gcgggacatc tttgactatt ttgcggaaga agttttttcc
     2101 aacgaagcgg aagaagtcca ggc
//
LOCUS       DATCGC010000927         1155 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_17671, whole genome shotgun sequence.
ACCESSION   DATCGC010000927 DATCGC010000000
VERSION     DATCGC010000927.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1155)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1155)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1155
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17671"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1065
                     /gene="rhmD"
                     /locus_tag="VIJ87_09015"
     CDS             <1..1065
                     /gene="rhmD"
                     /locus_tag="VIJ87_09015"
                     /EC_number="4.2.1.90"
                     /inference="COORDINATES: protein motif:HMM:NF011968.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050032 - L-rhamnonate dehydratase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnonate dehydratase"
                     /protein_id="HEY5444589.1"
                     /translation="TSWGINALGTVVVQVELTDGTIGVGCSIGGEPACYIIEKHLSRF
                     VEGQDPRNVELIWDQMWRATMPYGRKGLTIQAISAVDLAIWDCLGKLRDEPVYALIGG
                     KTKERLPVYATTSRADIAQQWGFKGAKIPCRYGPADGNEGLKKNIEVMAEARAQVGPD
                     FPLRLDCYMALTVPYAIQLAKALAPYDLLWIEECLPPDDYDGYAALKAALTGTCLVTT
                     GEHEYTRYGFRELIARKCADILQPDINWVGGLTEARRIVAMAAAYDIPVIPHGSSVFS
                     YHMQYAFSNCPIAEFLVMSPKADELVPLFGELFTNEPLPNNGYLDLGDAPGWGVELNT
                     SLELIRPYESTRSDVVVNVR"
BASE COUNT          259 a          269 c          343 g          284 t
ORIGIN      
        1 accagctggg gtattaatgc gctgggcact gtcgtagttc aggttgaact taccgacggc
       61 actatcggtg tcgggtgtag catcggcgga gaaccggctt gctacatcat cgagaagcac
      121 cttagtcgtt ttgtcgaagg gcaggatcca cgcaacgtcg aattgatctg ggatcagatg
      181 tggcgtgcga cgatgcctta cggacgtaag ggcctcacga tccaggctat cagcgcagtc
      241 gatttggcga tctgggattg tcttggaaag cttagggatg aacctgtcta tgcgttgatc
      301 ggcggaaaga caaaagagcg cttgccggtt tatgcgacga cctcacgtgc tgacattgcg
      361 cagcagtggg gattcaaagg cgccaagatt ccctgtcgtt acggcccggc ggatggcaac
      421 gaaggtttga agaagaatat tgaagtcatg gccgaagcga gagcgcaggt tggtcctgac
      481 tttcccctgc gtctcgattg ctacatggct ctgaccgtgc cttatgcgat tcagctcgcc
      541 aaggctcttg ctccttacga tctgttatgg attgaagagt gtttgccgcc cgatgactac
      601 gatggctatg cagcgctcaa agcggcgttg acaggaactt gcttagtaac aaccggagaa
      661 catgagtaca cgcgttatgg cttccgcgag ttgattgcgc gcaagtgtgc cgacattttg
      721 caacctgaca tcaactgggt tggtggtcta actgaggcac gacgcatcgt cgcgatggct
      781 gcggcttacg acattccggt tattccgcac ggctcgagcg tgttttcgta tcacatgcag
      841 tacgcttttt ctaattgtcc gatcgccgag ttcctggtca tgagtccaaa ggctgatgaa
      901 ttggtgccgt tgtttggtga gctgtttacg aatgagccgt tgccaaacaa tggctatctc
      961 gacttgggag acgcgccggg ttggggagtt gagttgaaca cgtcactgga actcattcgg
     1021 ccgtatgaga gcactcggag cgatgtcgtc gtaaatgtcc gataagcttg agcttgtcgt
     1081 ttgaccttaa aaagaattca gccgcagata aacgcggata agaacagatc aggaaggact
     1141 gcgaagccga tttag
//
LOCUS       DATCGC010000928         1211 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_146614, whole genome shotgun sequence.
ACCESSION   DATCGC010000928 DATCGC010000000
VERSION     DATCGC010000928.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1211)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1211)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1211
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146614"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            225..>1211
                     /locus_tag="VIJ87_09020"
     CDS             225..>1211
                     /locus_tag="VIJ87_09020"
                     /inference="COORDINATES: protein motif:HMM:NF015585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialate O-acetylesterase"
                     /protein_id="HEY5444590.1"
                     /translation="MKTLLLLILLVVSASLTGRANVVLPDVLSSGMVLQRDQKIPIWG
                     KADPGEAITVTFGKQTKKTTADKDGKWLVRLNPLKANATPATLTVEGKNKLELNDILV
                     GEVWLVAGQSNMQRLLSETANGEAAIAAANHPQIRLFNVSRQVAFKHAAPPLAKWAAC
                     TSESVKQFSAAGYYFAVELQKELNVPVGVINSSYGGSQAEAWTPVEYLLASGDLKPTV
                     DRTKIWDEERPRVKVEYDEAIKKWREESDKAKAAGATPRPSPAVPDSLREYRVAASIY
                     DGMIAPLIPFYIRGAFWYQGESNEARAQQYEILLPVMIKAWRERWGQGDFPFG"
BASE COUNT          298 a          291 c          339 g          283 t
ORIGIN      
        1 gaagtgtgtt gtggaaggaa tcaggtcgac gaagttggcg ctggcaaagc atctgttaaa
       61 aggcttgccg atattcgatc cctctcgtcc ggatcagctc gaaagttttg tgttgccggc
      121 tagtccagtg gtgactaata caaaacccct gggtagctaa gtaatttctt gattagcggc
      181 tgcttctagt taaggactag ttgtctgagc acctctcaat ctttatgaaa actcttctcc
      241 tgttaattct gttagtcgtg tctgcttcgc ttactgggcg tgcgaatgtt gttctgcctg
      301 atgtcctgag tagcggcatg gtcttgcaac gcgatcagaa gatccccatc tgggggaagg
      361 ccgatcccgg cgaagcgatc actgtcacat tcggaaagca gacaaagaag actaccgctg
      421 acaaggatgg caagtggcta gttcgactaa atccgctcaa ggcgaacgca acgccagcga
      481 cattgactgt cgaaggaaag aacaaactcg aactcaatga catactcgtc ggcgaagttt
      541 ggttggtggc gggtcaatca aacatgcagc gtttgttgag tgagacagca aatggggaag
      601 cagcaatcgc ggcggcgaat cacccgcaga ttcgactctt caatgtcagt cgccaggttg
      661 ctttcaaaca tgcagcgcct ccactcgcga aatgggcagc gtgcacatct gaatcagtca
      721 aacagttttc ggcagctggt tattatttcg cggttgagtt gcagaaagaa ctcaatgttc
      781 cagtcggggt catcaattcg tcttacggtg gctcgcaggc cgaggcgtgg actcccgttg
      841 aatacctact cgcttccggt gatctgaaac cgactgtcga tcggacaaag atctgggacg
      901 aagagcgacc aagagtgaaa gtcgaatacg acgaggcgat taagaaatgg cgcgaagaat
      961 ctgacaaagc aaaagcagca ggagcaactc cgcgaccttc tccggccgtg cctgattcac
     1021 tgcgcgagta tcgtgttgct gcttcaatct acgatgggat gatcgcgccg ctgatccctt
     1081 tctacattcg cggagcgttc tggtatcaag gtgagtcaaa cgaagcgcgt gcgcagcagt
     1141 acgagattct gctgcccgta atgatcaagg cctggcggga gcgctgggga caaggcgact
     1201 ttccgtttgg a
//
LOCUS       DATCGC010000929         1136 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_315689, whole genome shotgun sequence.
ACCESSION   DATCGC010000929 DATCGC010000000
VERSION     DATCGC010000929.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1136)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1136
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_315689"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..606
                     /locus_tag="VIJ87_09025"
     CDS             <1..606
                     /locus_tag="VIJ87_09025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444591.1"
                     /translation="KQLTKAPGYDAETTITLDGKKLVFTSTRNGDLDIYTMDADGGNV
                     KQLTNELGYDGGPFWSYDGKQIVYRAYHPETEKQKTDYTNLLKQNLIRPTTLEIWVMN
                     ADGSNKRQVTHNGKANFGPYFFPDGKRIIFASNMDDPKGRNFDLYKINVDGSGLERLT
                     FNETFDGFPMFTKDGKKLVFASNRNSAKQGDTNVFIADWVE"
     gene            817..>1136
                     /locus_tag="VIJ87_09030"
     CDS             817..>1136
                     /locus_tag="VIJ87_09030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444592.1"
                     /translation="MKPRYLSILLISFLLANSVVAQQVATFDASAEKLQKHVSYLASD
                     KLEGRRTGTQGSTDAAKYIAAEFGKLGLRPAGAKANSWRRTTPLNAFQQTFPYVAGVE
                     LGKG"
BASE COUNT          313 a          274 c          289 g          260 t
ORIGIN      
        1 aagcaactga caaaggcacc gggttacgac gcagaaacca cgatcactct cgacggcaag
       61 aagcttgtat tcacttcaac gcgtaacggc gacctcgaca tctacacaat ggatgccgac
      121 ggaggtaacg ttaagcagct cacaaacgag ctcggttacg atggcggacc cttctggtct
      181 tacgacggca agcagatcgt ttatcgtgct taccatccgg agactgaaaa gcaaaagact
      241 gattacacga acctgctcaa acagaatttg attcgtccta ctacgcttga gatctgggtg
      301 atgaacgctg atggctcgaa caagcgacag gtgacgcata acggcaaagc caactttggc
      361 ccctacttct tccctgatgg caaacgaatc atcttcgcgt cgaacatgga tgatccaaaa
      421 gggaggaatt ttgacctgta taagatcaat gtcgatggat caggtttgga aaggcttacc
      481 tttaatgaga cctttgacgg ctttccgatg tttacaaagg atggaaagaa gttggtcttt
      541 gcgtcgaata gaaattctgc gaagcagggc gacacaaatg tgttcatcgc agattgggtt
      601 gagtagtgtc cgataagctt tagcttgtcg tgagttggat aattgatcac tcgcatttca
      661 aactgttgaa gagcggggac agggtccacc gttctgacct gcaaatcagc gataagcgtg
      721 tcgcttacct aaagacactt gatccgtgag ccaatttaca agtcaggagg gtgtaccctg
      781 tccccgccga ccccaagccc tcaatgaggt gtagttatga aaccaagata cctatcgatt
      841 cttttaatct cattcctgct cgcgaacagt gtcgtcgctc aacaagttgc gacttttgac
      901 gccagtgcgg agaaactaca aaaacacgtc tcttacctcg cctcagacaa attggaaggt
      961 cggcgtactg gaacacaagg atcaaccgat gcagcgaagt acatcgcggc cgagtttggc
     1021 aagttagggt tgcgcccggc gggtgccaaa gcaaactcct ggagacgcac tacgccgctc
     1081 aatgcgtttc aacagacgtt tccatacgtg gcgggtgttg agttgggcaa aggaaa
//
LOCUS       DATCGC010000930         1717 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_279134, whole genome shotgun sequence.
ACCESSION   DATCGC010000930 DATCGC010000000
VERSION     DATCGC010000930.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1717)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1717)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1717
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_279134"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1079
                     /gene="purD"
                     /locus_tag="VIJ87_09035"
     CDS             <1..1079
                     /gene="purD"
                     /locus_tag="VIJ87_09035"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR00877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HEY5444593.1"
                     /translation="PEAPLAAGLVDCFEEAGLPVVGPRASAARLESSKVFAKDFMARN
                     KVPTAAYRVAQSPEEAIDALRGGEFGDSSASVVVKADGLAAGKGVVVAQSHREAEQAI
                     EDLMINHVAGAEASTRVVLEETLVGTEASLLLFADGKDYVIMPAARDHKRIGENDTGP
                     NTGGMGSVTDASILTSEELQKAINGIVEPTLAGAEREGFPFKGILFLGLMLTSAGPKL
                     LEYNVRFGDPETQAILVRLKTDLVSIFDGIRTRRLGQLKVEWTSGASACVVAASRGYP
                     GKYETGAVIEGLERQLEGVEIFHAGTAFSSEGSVIASGGRVLGVTSAATTLSDSLANC
                     YDALRKIHWPGMQFRRDIGRTSIV"
     gene            1250..>1717
                     /locus_tag="VIJ87_09040"
     CDS             1250..>1717
                     /locus_tag="VIJ87_09040"
                     /inference="COORDINATES: protein motif:HMM:NF015945.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspA/IM30 family protein"
                     /protein_id="HEY5444594.1"
                     /translation="MGLWTRMKRSMRALFGGFIEKTEDPELILQQTIRDMRDRVPELN
                     NSVAQVMATEKLLAKNKERLESQVVDLDSKIRASVKMGRDDIATAYIGQLQQAQVDLT
                     KTSQQLEHANLASKQALKARDNYVLQMQRRTAEAMQLINQSKQAKLQEQLAQTM"
BASE COUNT          420 a          384 c          501 g          412 t
ORIGIN      
        1 gtccggaagc tcctttggcc gcagggctgg tcgactgttt cgaggaggcc ggtttacctg
       61 tcgttggtcc acgagcttca gctgcacgac tcgaaagcag taaagttttt gcgaaggact
      121 ttatggcgcg aaacaaagtt ccgaccgcgg cttatcgagt agcgcaatct cctgaagaag
      181 caattgatgc tttgcgtggc ggtgagtttg gtgactcatc cgcttctgtt gtggtgaagg
      241 cagatggttt ggctgcggga aagggagttg ttgttgctca gtctcaccga gaagccgagc
      301 aagcaattga agacttgatg atcaatcatg tggccggtgc tgaggcttca accagggttg
      361 tgctggagga gactctggtc gggacagaag catcgctact gctcttcgct gatggcaaag
      421 attacgtgat catgccggcc gcacgagatc acaaacgaat aggtgaaaac gacaccggcc
      481 caaatactgg aggaatgggt agtgtcactg atgcttcaat tttgaccagc gaagaacttc
      541 aaaaggccat caacggaatt gttgagccaa ctctcgccgg tgctgagcga gaaggttttc
      601 ctttcaaagg aattctattt cttggactga tgttaacttc ggctggaccc aaattgcttg
      661 agtacaacgt tcgttttggt gatcctgaga cccaggccat cttagttaga ctaaagacag
      721 acttggtctc gatcttcgac ggcattcgaa cccgaaggct tggccaactg aaagttgaat
      781 ggacatcagg agcttccgct tgtgtggttg ccgcgagccg tggttatcca gggaaatatg
      841 agactggggc ggttatagaa gggcttgaga ggcagttgga aggtgtcgaa atcttccatg
      901 cgggcacggc cttttcgtcg gaagggagcg tgattgcgtc cggaggtcgc gttcttggtg
      961 tcacgtcagc cgctacaacc ctgtctgatt cgctggcaaa ttgctatgac gcccttcgta
     1021 agattcattg gccgggaatg cagtttcgca gagacatcgg gagaacatca attgtctgat
     1081 gtggtcactg gctgaggctg tgcaaggctt aggtctctac tgttatactc ccaaacgttt
     1141 tggttttttg cgtgacttga aaccgcctga gcatatacgt cgtacatctg gtcgggtgtg
     1201 gtggtaagac aaggagattt gtcatctcgc cgtcggagga atagttgaaa tgggactttg
     1261 gactaggatg aaacgctcta tgcgtgccct ctttggaggg ttcattgaaa agactgaaga
     1321 cccggaactc attcttcagc aaactatccg agacatgagg gatcgagtac cggagctgaa
     1381 taattccgtg gctcaggtga tggcgaccga aaagctcctt gcgaagaaca aggagcgact
     1441 tgaaagtcag gtggtcgatc tcgattccaa aatccgagcc tcagtcaaga tgggtcgtga
     1501 tgacatcgcg actgcttaca ttggccagtt gcaacaggct caggtagatc tgacgaagac
     1561 gtctcagcaa ctagagcacg cgaatctggc atcgaaacaa gcgctcaaag cacgcgacaa
     1621 ctacgtgctt caaatgcaac gccgaacggc cgaggcgatg caattgataa atcagtcgaa
     1681 gcaggcgaag ttgcaggaac agcttgcgca gacgatg
//
LOCUS       DATCGC010000931         1755 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_212264, whole genome shotgun sequence.
ACCESSION   DATCGC010000931 DATCGC010000000
VERSION     DATCGC010000931.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1755)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1755)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1755
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212264"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..635)
                     /locus_tag="VIJ87_09045"
     CDS             complement(<1..635)
                     /locus_tag="VIJ87_09045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444595.1"
                     /translation="MAYVIYTPNAFEPAKSEKHIVEAGISVREWVKSFLRAPDFDHPT
                     ICVVNGDPLLRAGWDYLLKPDDVVNFLTLPGCPATWIAIISIVITIVMLGVTLLMSTP
                     TPTTPGEAPASDPVYTIKGQANSIRLAEPIECNYGRNRVYPSYAARPYYEYRDNDQYQ
                     FSLFCLGQGEYEIEEIKIGDTLLSNFQEVQYEVIPPAGQVTIFPTNVYTSA"
     gene            complement(623..1069)
                     /locus_tag="VIJ87_09050"
     CDS             complement(623..1069)
                     /locus_tag="VIJ87_09050"
                     /inference="COORDINATES: protein motif:HMM:NF013073.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NlpC/P60 family protein"
                     /protein_id="HEY5444596.1"
                     /translation="MSQSNTLIKNKLHWIYKYLSIPWVAGGRDKQGVDCWGLLRLVYK
                     EEFGIELPEVPGLPWNTKPAAKMLREIVEQESASWTEIAKPIDGCGVAMSKNTILHHV
                     GIWAVADGGKIVHCLQPQNVEAVSLNWLWPKGFFVIKFYRHKLWPT"
     gene            complement(1194..>1755)
                     /locus_tag="VIJ87_09055"
     CDS             complement(1194..>1755)
                     /locus_tag="VIJ87_09055"
                     /inference="COORDINATES: protein motif:HMM:NF020449.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1833 family protein"
                     /protein_id="HEY5444597.1"
                     /translation="LLRLTGTWMLSSASQLFHNMPNTSLQDAIKEAFASCPSSVVIYD
                     TLEIRQPGVQDSVFIVRSHQALTATDEDGNVREFEPVGFQFTLPPTDDQGFQSLNISI
                     DNVGRRVKDFVETAKSEQVPVEVVYRPFLSDDLSRPQMIPPLILYLKDIRISTLQVTG
                     KATFMDVVNKKFPSELYTRDRFPSLG"
BASE COUNT          423 a          464 c          442 g          426 t
ORIGIN      
        1 tctgctgaag tatagacgtt ggtcgggaag atagtcacct gccccgctgg agggataact
       61 tcatactgca cttcctgaaa gttagagagt agcgtatctc cgatttttat ttcctctatt
      121 tcatactccc cttgccccag acagaacaag ctaaactggt attggtcatt gtcgcggtat
      181 tcgtagtagg gccgcgccgc gtaggaaggg tagactcgat ttctcccata gttgcattca
      241 atcggctcgg ccagccggat ggaattcgcc tgccccttga tggtataaac ggggtcgctg
      301 gccggagctt ctccaggagt cgtcggggtc ggcgtcgaca tcagcagcgt gactccgagc
      361 attacgatgg taatgacgat ggagataatg gctatccagg tggcggggca tccaggcaac
      421 gtaaggaagt taaccacgtc gtctggtttg agcaggtaat cccagccagc tcgcagcaac
      481 gggtctccgt tgacgacaca aatagtcggg tggtcaaagt ccggagctct caagaaagac
      541 ttcacccact cgcggacaga tatccccgct tccactatat gcttctcgga cttcgctggc
      601 tcaaaagcgt tcggcgtata gattacgtag gccataattt gtgacggtag aatttgataa
      661 caaagaaccc cttcggccaa agccaattca aggagactgc ctcgacattt tgcggctgca
      721 aacaatgaac gattttgcca ccgtcagcta ctgcccaaat accgacgtgg tgcaggatgg
      781 tattcttgct catcgctact ccgcacccgt caatcggctt ggcaatctcg gtccacgagg
      841 cgctttcctg ctcaacgatt tcccggagca tcttagcagc cggcttcgta ttccatggaa
      901 gccccggaac ttccggcagc tcgataccga attcctcttt gtagacgagt cgcaagagtc
      961 cccagcaatc cacgccttgc ttgtctcgac cgcccgctac ccaaggaatc gacaaatact
     1021 tgtaaatcca atgtaacttg ttctttatca atgtgttgct ttgactcata cgctaaaacg
     1081 caaggaattg agatttgcgc tcgcccggga gcttcgctag agattcttca accgaacgct
     1141 tgaaaatcgc tcctagcgca aaatccgttc gaaattcgct tagattcata cgcttatccc
     1201 aagctcggaa agcggtcccg cgtatagagc tccgagggga acttcttatt cactacgtcc
     1261 ataaacgtcg ctttccccgt tacttgcaat gtgctaattc ggatatcttt caggtagaga
     1321 atcagtggcg gtatcatttg cggtcgtgac aagtcgtcgc tcaagaaagg acgatagaca
     1381 acttccaccg ggacttgctc cgacttggca gtctctacga agtctttcac gcgccggcct
     1441 acattgtcga tggaaatatt gaggctctgg aatccttggt cgtcggtcgg cggcaaagta
     1501 aattggaatc cgacgggctc aaactcgcgc acgtttccgt cttcgtccgt tgccgtaaga
     1561 gcttgatgac tacggacaat aaaaacagag tcctgcactc caggctggcg tatctccaac
     1621 gtatcgtaaa tcactacgct cgaagggcag gaagcgaaag cttccttgat ggcatcttgt
     1681 agagaagtgt taggcatgtt atggaagagc tgagaggcgg aagaaagcat ccaagtcccc
     1741 gtcagccgaa gtagg
//
LOCUS       DATCGC010000932         1340 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_46879, whole genome shotgun sequence.
ACCESSION   DATCGC010000932 DATCGC010000000
VERSION     DATCGC010000932.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1340)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1340)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1340
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46879"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            27..>1340
                     /locus_tag="VIJ87_09060"
     CDS             27..>1340
                     /locus_tag="VIJ87_09060"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY5444598.1"
                     /translation="MTLFQRAFSITFALAFLGATVVNAQNGQPKIDWPHYQDMAVDLM
                     QKYLRINTSNPPGNEIETAKFFKSLFDENGIPNEIFEYKPTRANIIARLKGNGTKKPI
                     ILLSHMDVVTADPSAWEVDPFSAEIRKGSIYGRGALDMKSEGLLHLMTMLILKQQNIQ
                     LSRDVIFIATADEEVKDEGSIWMIANKSDLFKDAEYLITEGGDNLLEGSAVRYVGVDV
                     AEKAPFWLQLTATGQPGHGSRPISDSATNRLVRAMSRVINWETPIKLLPAVEKFFKDV
                     APLQSEPMRTKFANIRASLQDPAFVKELTAEREYNFLLRNTISLTMLSGSKQTNVIPN
                     SATCNLDVRLLPDENREDFLAALKGVIADPTIKVENVNTFKPPNSSRVDTELFKVISD
                     VTKANHPEAIVTTKMLSGYTESQLYRQLGITAYGWVPFYTTPEENE"
BASE COUNT          380 a          355 c          317 g          288 t
ORIGIN      
        1 gccagcacag agaagaagga aacccagtga cgttatttca aagagcattc tcgataacct
       61 tcgcccttgc gtttctgggc gccacagttg tcaacgcaca aaacggtcaa ccaaaaatcg
      121 actggccgca ttaccaggac atggctgtcg acctcatgca gaaatacctg cgcatcaaca
      181 cctcaaatcc tcccggcaat gaaatcgaaa ctgccaagtt ctttaaatcg ctgtttgacg
      241 agaatggcat tccaaacgaa atcttcgaat acaaacccac ccgcgcgaac attatcgcca
      301 ggcttaaagg caacggcaca aagaaaccga tcatcctcct aagtcacatg gatgttgtta
      361 ctgccgatcc aagtgcgtgg gaagttgatc cattctccgc cgagattcga aaaggttcga
      421 tttacggacg cggcgcgctc gacatgaaga gtgaaggact acttcacttg atgacgatgc
      481 tcattctcaa acagcagaac atccagctgt ctcgcgacgt catcttcatc gcaactgccg
      541 atgaagaggt aaaagacgaa ggttcaattt ggatgattgc caacaagtca gacctgttca
      601 aagacgccga gtatttgata actgagggcg gcgacaatct gcttgaaggc agcgcggtga
      661 gatacgtggg cgttgacgtg gcagaaaagg cgccgttctg gttgcaatta accgcaacgg
      721 gtcaaccggg ccatggctcg cgtccgattt ctgattcagc gactaaccgc ctcgtgcgcg
      781 cgatgtctcg agtcatcaat tgggagaccc caatcaagtt gttacccgca gtcgagaaat
      841 tctttaaaga cgtagcgccc ttgcaatcag agccaatgcg cacaaagttt gcgaacattc
      901 gggcttcttt gcaggacccg gcatttgtta aggaactgac agctgagcgt gagtacaact
      961 ttctcctccg taacacgatc tcgctgacta tgctcagcgg cagtaagcaa accaatgtca
     1021 tccccaatag tgcgacctgc aatctagacg ttagactact tccggacgaa aaccgagaag
     1081 acttcctggc ggctctgaaa ggcgtaatcg ctgatccgac aatcaaagtt gaaaacgtca
     1141 acaccttcaa gccaccaaat agttctcgcg ttgacacaga actcttcaaa gtgatttcgg
     1201 acgtaactaa agcaaaccac cccgaagcga tagttacaac caagatgttg agtggttaca
     1261 cggagagcca gctttatcgc caactcggta tcacggcgta tggctgggtt ccgttttaca
     1321 cgacccccga ggaaaatgag
//
LOCUS       DATCGC010000933         1157 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_112442, whole genome shotgun sequence.
ACCESSION   DATCGC010000933 DATCGC010000000
VERSION     DATCGC010000933.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1157)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1157)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1157
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112442"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..379)
                     /locus_tag="VIJ87_09065"
     CDS             complement(<1..379)
                     /locus_tag="VIJ87_09065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444599.1"
                     /translation="MKTKLKMIGLLIVVLSIAGSASLQLEAQTKKRVPKGPPKYTLAA
                     NKTMRLRLNDKLTSKNANVGDEFKSTVVDPVYAKGFVVIPQGSIVIGHVTHVVRASRK
                     SQGGSLNVAFTRLELPNERTYAMN"
     gene            complement(408..947)
                     /locus_tag="VIJ87_09070"
     CDS             complement(408..947)
                     /locus_tag="VIJ87_09070"
                     /inference="COORDINATES: protein motif:HMM:NF024978.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4136 domain-containing protein"
                     /protein_id="HEY5444600.1"
                     /translation="MRKLLIPLTLLLVAGSAFAQKVTVNYDKSINFSKYKTFSWARGI
                     PAKNPFINMMIVEGFERALSNKGLTKADNNGDLQLSLSVAVDVDIQVTHGGWGNNGSG
                     LMTGIPSGSTSGAWDVRRGTIVLDMLDGTSQNLVWHGAASDTLSHAPTTDMNKDAKRA
                     EKHVRNAVEKLMKKFPRSG"
BASE COUNT          266 a          302 c          259 g          330 t
ORIGIN      
        1 cattcatcgc gtaggtcctt tcgtttggta actccaaacg ggtgaaggca acattcaagc
       61 tgccgccctg gctcttgcga cttgctctca caacatgcgt cacgtgtcca atgacaatac
      121 ttccctgagg aattacaaca aaacccttgg cataaaccgg atcaactaca gtcgatttaa
      181 actcgtcacc aacgtttgcg ttcttcgagg tcagtttatc gttcaaccgt aaacgcattg
      241 ttttattggc ggcaagtgtg tacttcggag ggccttttgg aaccctcttt ttagtttgcg
      301 cttccaattg caacgaagca ctgccggcaa tactcaaaac cacaatcagc aatccgatca
      361 ttttcaattt ggttttcatc gtagcctcta gttgtaggag acgttcatta tcctgaccgt
      421 ggaaacttct tcattagttt ttccacggca ttcctaacgt gtttttcagc cctcttcgca
      481 tccttgttca tgtctgtggt cggcgcgtga gatagtgtgt cgcttgctgc tccatgccag
      541 accaggttct gcgaggtccc gtcaagcata tcaaggacaa tcgtgcctcg cctaacatcc
      601 cacgcgccgc tagtgctgcc actcggtatg ccggtcatca gaccacttcc attgttaccc
      661 caaccgccat gcgtcacctg tatgtctacg tcgactgcaa cgctcaaact caattgcaag
      721 tcaccgttat tatctgcctt ggtcaatccc ttatttgaga gcgcgcgctc aaaaccttcc
      781 acgatcatca tgttgatgaa tgggttcttc gccggaattc ccctggccca cgaaaaggtc
      841 ttgtacttgc tgaagtttat gctcttgtca taattgacgg ttaccttttg agcaaacgcc
      901 gagccagcaa cgaggagtag agtcaaaggt attagcaatt ttctcatagt gccgagaggg
      961 taaagaagtc ttcggacctt tttaactgtc agtattaaca gtgggtgttt ttttgcagcg
     1021 aggagttgaa aggagcaagg tcagtaccac aacgcggtag cgtgtggctt gatcgtggta
     1081 atacctgttg tgagtcgtag gcgagccaca cgtggtaagg ccttgttacc gacagtctct
     1141 taactctacc ctcgaat
//
LOCUS       DATCGC010000934         1168 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_112458, whole genome shotgun sequence.
ACCESSION   DATCGC010000934 DATCGC010000000
VERSION     DATCGC010000934.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1168)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1168)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1168
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112458"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..519)
                     /locus_tag="VIJ87_09075"
     CDS             complement(<1..519)
                     /locus_tag="VIJ87_09075"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEY5444601.1"
                     /translation="MKIQKAVILAAGRGTRMRELTADVPKPMIQVRGKPVLQHIIEGL
                     RDAGIRDCLVVVGYRADAVQDFFRDGSRYNIAIQYKTQTVQDGTGRVVELAHEFVTDH
                     PFILAYGDILVDPTNYNRLVDLPDDVGAMLTVTCGEDVSQGGAVFLNDEMYLVDLREK
                     PKRGEPTSPWYNA"
     gene            complement(602..>1168)
                     /locus_tag="VIJ87_09080"
     CDS             complement(602..>1168)
                     /locus_tag="VIJ87_09080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444602.1"
                     /translation="PGDYQVKLTVGGKSQTVPLKLIIDPRNKGQEAGLQKQFTLAMQV
                     DDRISRLHQAVNQIRDLRSQIQNLHKRFGEDQRLKPALAVADDLDHKMSEVEQKLIQV
                     NMKGSEANLAFPNMLNERFDTFSHIIESGDKEPTKPQLEVFEMLSNQLDDQLKKWAQV
                     KQEDVAKVTELIKEANLPALIIPEKKTS"
BASE COUNT          246 a          319 c          284 g          319 t
ORIGIN      
        1 cgcattatac caggggctcg tcggttcccc tcgttttggt ttttcgcgaa gatcgaccag
       61 atacatctcg tcattgagaa acaccgcgcc accctgacta acgtcttcgc cacacgtgac
      121 tgtcagcatt gccccaacat catcgggaag atcgactaag cggttataat tcgtcggatc
      181 aactaaaata tcgccgtagg ccaggatgaa tggatgatca gtgacgaatt cgtgagcgag
      241 ctccacaacg cgcccggttc catcttgcac cgtttgcgtt ttatactgaa ttgcgatgtt
      301 gtagcgcgac ccgtcgcgga aaaaatcctg cacggcatca gcgcgatagc caacgacaac
      361 aagacaatcg cgtatccctg cgtcgcgcag tccttcgatg atgtgctgta ggaccggttt
      421 cccgcgcacc tggatcatcg gtttcggaac atccgcggta agctcgcgca tccgtgtacc
      481 gcggcccgct gcgaggatta cagctttttg gattttcatg gtgcatcggc ttctctgaag
      541 acaatactaa tcttcacaac ttgtccgtac ccaacattgc gttgacgacg acgcgatcca
      601 cctagctggt tttcttttcc gggatgatga gcgcaggcaa gttggcttcc ttgatcaatt
      661 cggtcacctt cgcgacatct tcctgcttga cctgcgccca cttctttaat tggtcgtcga
      721 gttggttgct taacatttca aacacctcga gctgcggttt ggtcggttcc ttgtcgccgg
      781 actcaatgat gtgactaaac gtgtcaaagc gctcgttcaa catgttcggg aaagccagat
      841 ttgcttctga tcccttcata ttcacttgaa taagtttctg ttcgacctcg gacatcttgt
      901 ggtcgagatc gtctgctacg gcgagggccg gttttaagcg ctgatcctca ccgaaacgtt
      961 tgtgtaagtt ctgaatctgc gatcgcaaat cacggatttg attaacagct tggtgcagtc
     1021 tcgaaatccg atcgtccact tgcatggcca acgtgaattg cttttgcaac cctgcttcct
     1081 gtcctttgtt tcgcggatcg atgatgagct tcagcggaac tgtctgcgat ttgccgccga
     1141 cggttagctt cacctggtaa tcaccagg
//
LOCUS       DATCGC010000935         1092 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_379540, whole genome shotgun sequence.
ACCESSION   DATCGC010000935 DATCGC010000000
VERSION     DATCGC010000935.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1092
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_379540"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1092
                     /locus_tag="VIJ87_09085"
     CDS             <1..>1092
                     /locus_tag="VIJ87_09085"
                     /inference="COORDINATES: protein motif:HMM:NF012321.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY5444603.1"
                     /translation="VKQSLLNENAGKPSFLSRLEEKFKTSLYGFSGELSAIKDANDLN
                     GSGRTSDLAGALDETIKRSSGLPLSAVVIATDGASNVPRDLAATLRELRARDISVFTV
                     GVGNTTRPMDAELTRVNMPRRVLVGSRLNIEAFVGLTGYSATKVLIGIREDGRAIKTE
                     EFSFRGSDTQAVNLEITPTTPGIHRYTVEVTPLDGEVTIENNKQDALVEVIPGPLRIL
                     YVEGEPRWELGKIRESLLPNEKNVTLVCLQRTGENKFYRQGLGNQGELVSGFPKTEEE
                     LFAYDALMIGSVEAGFFSADQLRNIEAFVARRGAGLLVMGGRLAFDGGKYKGTTLEEL
                     LPVSLTGNPVNDNNSFQSVYKPVLTGAGQT"
BASE COUNT          276 a          273 c          292 g          251 t
ORIGIN      
        1 gtgaagcaat ccctcctcaa cgaaaacgca ggaaagccat cgtttctgag tcgcctcgaa
       61 gaaaagttca agactagtct ttacggtttc tccggcgaat tgtccgccat aaaggatgcg
      121 aacgatctca acggttccgg acgaaccagt gatctcgcgg gcgccctgga tgaaaccatc
      181 aaacgttctt cgggactgcc attgtcagcg gtggttattg caactgacgg cgcctcaaac
      241 gtgccgcgtg acctggccgc gactttgcgc gaacttcgcg cccgagatat ttcagttttc
      301 acagtcggag ttggtaacac cactcgaccg atggatgcag aactgacgcg cgtgaatatg
      361 ccacgccgcg tactagttgg ttcgcgacta aacatcgagg ctttcgttgg gttgaccggt
      421 tactccgcaa ccaaggttct tataggaatc cgcgaagatg gacgcgcgat caaaacggaa
      481 gaatttagct ttcgtggaag cgatacgcag gcggtcaatc ttgagatcac accaaccact
      541 cccggaattc atcgctacac tgttgaagta acgccactcg acggtgaagt caccattgag
      601 aacaacaagc aagatgcgct cgtcgaagtt attccaggac cgctcagaat tctttacgtc
      661 gaaggcgaac cccgttggga gctcggtaag attcgagaat cactcctgcc aaacgagaag
      721 aacgtgacgc tggtctgctt gcaacgtact ggtgagaaca agttctatcg tcaaggcctt
      781 ggcaaccagg gcgaattagt cagcggtttt ccgaagactg aagaagaact atttgcttac
      841 gacgccctga tgattggcag tgttgaggct ggtttcttta gtgctgatca attgcgcaac
      901 atcgaagcct ttgttgcccg acgtggcgct ggtttgctgg taatgggcgg acgactggca
      961 ttcgatggtg gaaagtacaa aggaacaact ttggaagagt tgttaccggt gtcgcttacc
     1021 ggaaacccgg tcaacgacaa taattcgttt cagtcggttt acaaaccagt gcttacaggt
     1081 gccggtcaaa cg
//
LOCUS       DATCGC010000936         1117 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_246565, whole genome shotgun sequence.
ACCESSION   DATCGC010000936 DATCGC010000000
VERSION     DATCGC010000936.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1117
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_246565"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(80..>1117)
                     /locus_tag="VIJ87_09090"
     CDS             complement(80..>1117)
                     /locus_tag="VIJ87_09090"
                     /inference="COORDINATES: protein motif:HMM:NF014026.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HEY5444604.1"
                     /translation="GAFRVYVDDKLVLDNWNDYKALVSYVTVSLDQTPHKVVLERKGR
                     GGPFGNSRTRLGIVRQGQFVSEEAKKLAAKADVVVVAAGFDQETESEGADRTFGLPPG
                     QDELIKEMSTANKNTVVVITSGGSVAMTPWVDRVPAIIEAWYPGQQGGTALAEVLFGD
                     VNPSGRLPVSFERRWEDNPVHDSYYTDKDTRKINYKESIFVGYRGYERAKTKPLFPFG
                     HGLSYTTFKYSNLSVRATSDGRYEVSFDVKNTGSREGAEVAQVYVGAGSGKVERPLKE
                     LKGFSKVSLKAGELKHVSVLLDGRSLSYYDVDAKQWRAEPGSFDVLVGHSSEQIELTG
                     KLNLTSAIAIK"
BASE COUNT          252 a          337 c          248 g          280 t
ORIGIN      
        1 gcaccgcttt ggtaaagaac gtgtaaactt gatttcgagt tttaccaaag cggtgccggg
       61 ccaccgcact ccaaggtatc tacttgatcg cgatcgcgct cgttaagttc aacttccctg
      121 ttaactcaat ctgttccgac gagtggccca cgagcacatc gaacgagcct ggctcagctc
      181 gccactgctt tgcatccacg tcgtagtacg acaacgagcg accatcgagc aggacggaaa
      241 catgcttcag ttcgccggcc tttagactaa ctttcgagaa ccctttcaac tctttgagcg
      301 gacgttctac ttttccagac ccggcaccaa catacacctg cgccacttct gcaccttcgc
      361 gcgaccccgt gttctttaca tcgaaggaaa cttcgtaacg accatcgctg gttgccctga
      421 cggataggtt gctgtacttg aaggttgtgt atgacaagcc atgaccaaat gggaacaaag
      481 gtttggtctt agcgcgctca tagccgcggt agccaacgaa gatactttcc ttgtagttga
      541 tcttccgcgt gtctttgtca gtgtagtaac tatcgtgcac cgggttgtct tcccaacgtc
      601 gctcaaagct caccggcaat cgccccgacg gattcacatc accgaataaa acttcagcca
      661 gcgcggtccc gccctgttgg cccgggtacc acgcttcgat aatcgcaggc actcgatcaa
      721 cccacggcgt cattgctacg cttccgcccg aagttataac gaccactgtg ttcttattcg
      781 cagtcgacat ctctttaatc aactcgtcct gacccggcgg caaaccaaat gttcgatctg
      841 cgccttcact ttcagtttcc tggtcgaagc cggctgcaac cacaacaaca tccgctttgg
      901 ctgcgagctt ctttgcttct tcacttacaa attgaccttg tcgaacaatg cctaaacgcg
      961 tgcgactatt accgaaaggt ccacctcggc cctttcgttc cagcactacc ttgtgtggag
     1021 tttgatccag cgagacagtc acataactga cgagtgcttt gtagtcgttc caattgtcga
     1081 gcacgagctt gtcgtcaacg taaactcgaa acgcacc
//
LOCUS       DATCGC010000937         1844 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_180540, whole genome shotgun sequence.
ACCESSION   DATCGC010000937 DATCGC010000000
VERSION     DATCGC010000937.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1844)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1844)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1844
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180540"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..997
                     /locus_tag="VIJ87_09095"
     CDS             <1..997
                     /locus_tag="VIJ87_09095"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEY5444605.1"
                     /translation="HYEIQNPKFEIRNSFMDNEILTFKVAEEHADSRLDAFLAEQIPG
                     WSRARLQRLVESEDVLVNDKSTKSSYRLRLGDEVEVELNTPEAETFSPEEIPIDVIYE
                     DDELVVVNKPAGLVVHPAAGTRSGTLANALAFHFQHLPGGSSTIRPGIVHRLDRDTSG
                     LLVVAKNAASLEHISDQFRDRTVFKSYVALVHGRADNESGRIDQPLGRDLSNRTRMAV
                     VRNGRSALSLYSVRRRYQRFTLLDVELKTGRTHQIRVHLAWLRHPVVGDETYGGGRDN
                     MIQDARLRAHIRNLGRHFLHAEKLGITHPKTGQRLEFSSPLPAELSELLEAIDHE"
     gene            complement(1106..>1844)
                     /locus_tag="VIJ87_09100"
     CDS             complement(1106..>1844)
                     /locus_tag="VIJ87_09100"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5444606.1"
                     /translation="AEAYTSRAFVKLSYDWDWLGAESDFQQALKLNSKYPTAHQWYAS
                     YLMQMGKFNRAKAELEEAHNLDPLSPIISSNTGLYSYYEHNYDDAISKYKITLQSDPD
                     FWVARHYLGLAYVQKGMFTEAISELRTLIKAPATGPLPDEVVANETEASASLGFAYGM
                     AGKRAEAQAILNQLQALSQRRYVSGIYFAVVYAGLKDSDRAIVYLNQAFESRHPGLVL
                     IRIEPIFDGLRSDDRFKQLVKRFEPIP"
BASE COUNT          461 a          462 c          469 g          452 t
ORIGIN      
        1 ccattacgaa attcaaaatc cgaaattcga aatccgaaat tcgtttatgg acaatgagat
       61 cctcacgttt aaggtggcag aagaacacgc cgactcccga ctcgacgcat tcctcgctga
      121 gcaaattcca ggttggagtc gggcccgtct acaacgacta gtcgaaagcg aagatgtctt
      181 agtcaatgat aagagtacaa agtcgtccta tcgtttgcga ctcggtgatg aagtcgaagt
      241 cgaactgaat actccggaag cagaaacctt cagtccggaa gaaatcccca tcgacgtaat
      301 ctacgaggac gatgaactcg tggtggtaaa taaacctgcc gggctcgttg ttcatccagc
      361 cgcaggcact cgttcaggca cactggctaa cgcacttgct tttcactttc aacatctgcc
      421 tggcggttca agcacaattc gtcccggcat tgtgcatcgt ttggatcggg atacttcggg
      481 acttctagtt gttgccaaga acgcagcgtc gctggaacac atctcggatc aattccgaga
      541 tcgaacagtg ttcaagtcat atgtggcgct ggttcatggt cgtgccgaca acgagagcgg
      601 ccgtattgac cagccgctgg ggcgtgattt aagtaacaga acgcgaatgg cggttgtgcg
      661 aaacggtcgg agcgcattgt cgctgtacag cgttcgccga cgctaccaga ggttcacgct
      721 gctagatgtc gagttgaaga ctggaagaac gcatcagatt cgtgtgcacc tggcgtggct
      781 tcgacacccg gtagtgggtg atgagacgta cggaggcggc cgcgacaaca tgattcagga
      841 cgctcgactg cgagcgcaca ttcgcaatct cggtcggcac ttcttgcacg ccgagaagtt
      901 ggggattaca catccgaaga cgggacagcg tttggaattt agctcaccac taccagctga
      961 gttgtcagag ttgttagaag caatcgatca cgaatgacta aggtgtccga taaactttag
     1021 tttgtcgttg tgatccacct cacaagtctc ttagctgaag agaacgacaa actaaagttt
     1081 atcggacatc ggagtgcctt caatttcacg gtatcggttc gaatctcttc accaactgct
     1141 taaaccgatc atctgaccgt aacccatcaa atattggttc aatgcgaatc agtaccaacc
     1201 ccggatggcg gctttcaaat gcctggttca aatacacgat cgcgcgatcg ctatctttaa
     1261 ggcctgcata gacaactgca aagtagatcc ccgacacgta acgcctttgt gagagggcct
     1321 gaagctgatt caaaatcgct tgagcctccg ctcgtttgcc agccatgcca taagcaaaac
     1381 ccagggacgc cgaggcctca gtttcgttcg ctacaacttc atcaggaagt ggtccggttg
     1441 ccggtgcctt gatcaatgta cgcaactcgc taatcgcttc tgtgaacatt cctttttgaa
     1501 cataagcgag acccaggtaa tgtcgcgcaa cccaaaagtc aggatcgctt tgcagagtta
     1561 tcttgtactt gctgatcgcg tcgtcgtagt tgtgttcgta gtacgagtag agtccagtgt
     1621 tcgaactaat tattggtgat agcggatcga ggttgtgagc ttcttcgagt tccgctttcg
     1681 cgcgattaaa ctttcccatc tgcatcaggt atgaggcgta ccattgatgt gcagttggat
     1741 atttcgaatt caacttcagc gcttgttgaa agtcactttc ggcgccgagc caatcccagt
     1801 cgtaagagag tttcacgaaa gcccgcgaag tgtatgcctc agcg
//
LOCUS       DATCGC010000938         1996 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_379596, whole genome shotgun sequence.
ACCESSION   DATCGC010000938 DATCGC010000000
VERSION     DATCGC010000938.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1996)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1996)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1996
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_379596"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..813)
                     /locus_tag="VIJ87_09105"
     CDS             complement(<1..813)
                     /locus_tag="VIJ87_09105"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY5444607.1"
                     /translation="MKKLFLLFVLFVSLTVIPVHSQSGRKPIEPKAKPETKTATLETS
                     DNGVTETKIDPAGETVEGDVIRFDTSLVTVPVTVVDRHGGYVPLLNREDFKIFEDGVE
                     QKLAYFATSDQPLTVILVIDTSGSTEFRLEDIHKAAIDFVGKLNARDSVMVMSFDDRI
                     EVLTRPTSDRELIANAIRRARTGGGTRLYDAVDSVFTKQLTTFSGRKAVVLFTDGVDT
                     TSRHASYDSTLRLAEESDAPIYSVDYDTSGGNTVFTQGLPIPKGPIIFGLPIP"
     gene            888..1040
                     /locus_tag="VIJ87_09110"
     CDS             888..1040
                     /locus_tag="VIJ87_09110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444608.1"
                     /translation="MASSRTVAVSPDDAKELTAKPVEAVLGDFGLLVVEWMLFEGQKV
                     DSKIRL"
     gene            1137..>1996
                     /locus_tag="VIJ87_09115"
     CDS             1137..>1996
                     /locus_tag="VIJ87_09115"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HEY5444609.1"
                     /translation="MSDTNLSNGSDDSGFAGHPKGLGPLFFTELWERFSYYGMRAILM
                     LYMTSTVAQGGLAFDTKHAASIYGTYTMSVYLTALPGGLIADYFLGARPAVLVGGIII
                     ALGHFSMIFHSITSFYLGMALIAIGTGFLKPNISAMVGGLYRENDPRRDSGFSIFYMG
                     INVGAVLAPLVIGYLAQGESFKRFLASMGLDPTGGWHWGFGAAGVGMILGLTIYLLSQ
                     RSLANVGTQVKKRDTGKTKSAEVNQPLTAKDWKRIAAILIFFLFTMLFWAAYEQKGAS
                     LNLYAKELVRT"
BASE COUNT          456 a          490 c          520 g          530 t
ORIGIN      
        1 tggtatcggt agtccgaaaa tgattgggcc ctttggtatg ggaaggccct gtgtgaaaac
       61 agtattgccg ccggaagtat cgtaatcgac cgaatagatg ggagcgtctg attcctccgc
      121 cagacgcaac gtgctgtcat aagacgcatg acggctcgtt gtgtcgactc cgtcagtaaa
      181 caggaccaca gctttgcgtc cgctgaaggt ggtgagctgt ttggtgaaaa cggaatctac
      241 agcatcgtaa aggcgagttc ctcctccggt gcgagctcgc cggattgcgt tggcgattag
      301 ctcgcggtca cttgtcggtc ttgtcagcac ttcaatccga tcgtcaaacg acatcaccat
      361 tacgctgtct cttgcgttta gctttcccac gaaatcaatt gctgctttgt gaatgtcttc
      421 caaacgaaat tcagtcgagc cactggtatc aatcacaagg atcacggtaa gcggctgatc
      481 actggtggca aagtaagcca gtttctgttc gacgccgtct tcaaagatct tgaagtcctc
      541 gcgattgagc agaggcacat acccaccatg ccgatcgact acggtaaccg gcactgtcac
      601 caacgaggtg tcgaaccgga taacatcgcc ttcgactgtt tcacctgccg gatcgatctt
      661 ggtttcagtt actccgttat ctgaagtttc caaagtagcc gtctttgttt ctggttttgc
      721 tttgggttcg attggcttcc gtcctgattg ggagtgaact ggaattacgg ttagagacac
      781 aaacaaaaca aacagcaaga agagcttctt cattgtggta cccgttacga gtgaactgcg
      841 tttgcctact tcaccgctgc ataaactccg cgcaatttgc gttcactttg gcatcatctc
      901 gaactgttgc cgtgtcgcct gacgacgcaa aagagttaac tgcaaaacca gtcgaagcgg
      961 ttttgggaga ctttgggctg ctggttgttg aatggatgct ttttgagggg caaaaggttg
     1021 attcaaaaat tcggttgtaa gcttcaacat aaggttgaat gtagaacttc cgtccaccat
     1081 aatgccgcga atttcctgag accagattct gcagcccatt ggatgtgagc ccgactatga
     1141 gtgatacgaa cctatcaaat ggatccgatg acagcggatt tgctggtcat cctaaaggac
     1201 ttggaccgct tttcttcact gaactgtggg agcggtttag ttattacggc atgcgggcga
     1261 tcctcatgct ttacatgacc agcacggtcg cccagggcgg tttggcattc gataccaagc
     1321 acgcagcatc gatctatggc acttacacga tgtcggttta tctcactgca ttacccggtg
     1381 ggctgatcgc ggactatttc cttggcgcgc gtccggctgt tttggtgggc gggatcataa
     1441 ttgcccttgg tcacttctca atgatctttc actcgattac ttccttctat ctgggaatgg
     1501 cactcattgc cattggcact ggttttctaa agcccaacat cagcgcgatg gttggcgggc
     1561 tttatcggga gaatgatcca cgtcgtgaca gcgggttctc gatcttttac atgggtatca
     1621 acgtcggggc agtgttagcg ccactcgtca tcggctacct tgcccagggc gaaagcttca
     1681 aacgattcct tgcctcgatg ggtctcgatc caacaggcgg gtggcactgg ggttttggcg
     1741 ccgctggagt cggcatgatt ctcggcttga cgatctatct acttagtcag cgcagtttgg
     1801 ccaacgtcgg aacgcaagta aagaagcgag acactggaaa gacaaagagc gcggaagtaa
     1861 atcagcctct tacagctaag gactggaaac gaattgctgc gatcttgatc ttctttcttt
     1921 tcacaatgct cttctgggct gcctatgaac agaagggtgc aagcctgaat ctctacgcaa
     1981 aagagttggt ccgaac
//
LOCUS       DATCGC010000939         1373 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_17817, whole genome shotgun sequence.
ACCESSION   DATCGC010000939 DATCGC010000000
VERSION     DATCGC010000939.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1373)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1373)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1373
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17817"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..320)
                     /locus_tag="VIJ87_09120"
     CDS             complement(<1..320)
                     /locus_tag="VIJ87_09120"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY5444610.1"
                     /translation="MRIARTIITSFLVVGGLFCFSGPVYPQGTNLGSIRGAVTDPKGA
                     AVPNASVKITDLATNISRDLTSNSQGDYELAGLKSGKYRVAITAPGFKTTSIDAVLSG
                     SDVVR"
     gene            complement(773..>1373)
                     /locus_tag="VIJ87_09125"
     CDS             complement(773..>1373)
                     /locus_tag="VIJ87_09125"
                     /inference="COORDINATES: protein motif:HMM:TIGR00976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HEY5444611.1"
                     /translation="DGELNVTAPGAERNDTFEYDPKNPVPTIGGRLCCGQALAPGPFD
                     QRPNESRSDVLIFSTSRSEKDLEVTGFITLDIYASTSANDTDFTALIADVDESGYARF
                     LTDGVVRARYRDGTQRAEEVVPGMVYKYPIDLWATSNVFKKGHRLRLYVSSSNFPRFN
                     RNLNTGEQMLGASRMLSAQQTIYHDARHPSALTLPVIPR"
BASE COUNT          326 a          349 c          351 g          347 t
ORIGIN      
        1 cgcactacat cgcttccgga caagacggcg tcaatggagg ttgttttaaa ccccggagct
       61 gtgatggcca cgcgatattt gcctgacttg agacctgcca attcgtaatc tccctgggag
      121 ttagaggtca gatcacgcga aatgttagtt gccaggtcag tgatctttac cgaagcgttg
      181 ggaaccgcgg cccccttcgg atcagtcacg gccccgcgaa tcgaccccag attggtgccc
      241 tgcggataca ccggaccgct gaagcaaaaa agacctccga ccactagaaa actggtgatg
      301 attgtgcgtg cgattctcat atgagactcc taactgaact gatcggcgaa agcatcagaa
      361 cgcttgaggg ctttgagccg gaggctgacc attcacttcc gacgatacga caagtcgctt
      421 tagagcttcc tctaagttcc atggggaggt tagtcaacgt tttaaacgaa ccctcgagaa
      481 tgcttgttga acgttcgggc ttggttagtt tgcgatttgt actaactatt ccctttttta
      541 ccgcgcttca atttctgatc aaattagaat gtttgcttaa gggtggctcg actggagccc
      601 gtggtattta atgcaatcgc cttatagcac cgtcgaacgg ccgatggcaa gaacatttta
      661 tggttcattc ttccaaattc ttgttgaagc cctgcccagt tggcccgtgt caagccttac
      721 tcattaacaa gatcttgtga cctcatgtcg gagtcgctga aaagaacaaa gctcaccttg
      781 gaatgaccgg aagggttagt gccgaggggt gcctcgcgtc gtgatagatg gtttgttggg
      841 cacttaacat gcgcgaggcc ccgagcattt gttcaccggt gttcaaattg cgattgaacc
      901 gcgggaaatt gctacttgaa acgtacagcc gtaaacgatg gccctttttg aatacgttgc
      961 tcgttgccca caggtcaatc gggtatttat aaaccattcc gggaacaact tcttcagcgc
     1021 gctgggtgcc atcgcgatat ctagcgcgca ccactccgtc agtcaggaaa cgtgcgtacc
     1081 cagattcatc cacatctgca atcaatgccg taaagtcggt atcattcgcc gacgtggatg
     1141 cgtaaatgtc cagagttatg aatccggtaa cttcaagatc cttctccgac cttgacgttg
     1201 agaagatgag aacatcggaa cgggattcat tcggacgctg atcaaaaggc ccaggtgcta
     1261 atgcctgacc gcaacacaat cggccgccaa tagttggcac tgggttcttc ggatcgtatt
     1321 cgaaagtgtc gttgcgctcg gcacccggag ccgtgacgtt tagttcaccg tcg
//
LOCUS       DATCGC010000940         1156 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_212403, whole genome shotgun sequence.
ACCESSION   DATCGC010000940 DATCGC010000000
VERSION     DATCGC010000940.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1156)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1156)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1156
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212403"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..251)
                     /locus_tag="VIJ87_09130"
     CDS             complement(<1..251)
                     /locus_tag="VIJ87_09130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444612.1"
                     /translation="MKSCPTCKRTFHDTTVFCLVDGSILDAPFDAEAPRHLPNPARTK
                     APPTEVLKASDSLPRTIPGPAPTITAQHANPTYPLPAEVP"
     gene            complement(794..>1156)
                     /locus_tag="VIJ87_09135"
     CDS             complement(794..>1156)
                     /locus_tag="VIJ87_09135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444613.1"
                     /translation="HEVEQICNRVAIIETGRLLYQGSVGDLIAEHHWIKLRVDRLSEA
                     YELLSLDPELSISRNGDESLHLRITDEQIPVVNARLVQQGFSVMEISPQRESLEDVFL
                     RLTQEARSGNQLRSSDQS"
BASE COUNT          261 a          314 c          322 g          259 t
ORIGIN      
        1 ggtacctcag caggcaaagg ataagttgga ttagcgtgct gtgccgtgat tgttggagcg
       61 gggcctggga ttgtccgggg caacgaatct gaagctttca gaacctccgt tggcggcgct
      121 tttgtcctgg ctggattagg aagatgcctg ggggcttcag catcaaacgg agcgtccagg
      181 atcgagccgt ccacgagaca aaaaaccgtc gtatcatgga acgtccgttt acaagtagga
      241 cagcttttca ctggcgctca cctaaggtta ataatcaaga cagtgggtca gttttgatgt
      301 ccgacaagct ttagcttgtc gaagtcgcgc gacaaactaa agcttgtcgg acattaagtt
      361 tgaaactgac cctctgccgg acggtaccat aactcggagg ctcagtgaat ggcgatgcga
      421 gccggcttag ttgatgtggc cgaggaccga cggctccgtg tcagaacccg gagcgatagc
      481 gacggggtca gcacgaacgt tttcgtctta actgacctca gcaacccgaa gggttgccag
      541 aaagtagccg gtggtcggag tccgcggaga ccaccggaaa aagtcatttg tcatgatcgc
      601 accccgaagg ggtgccagac ttcaacgtaa atttacagcg gaagttctgg cacccctccg
      661 gggtgcgacc caattaatct ctcgcattcc cggtggtctc cgcagactcc gaccaccggc
      721 tactttcttt gcaacccttc gggttgctga ggtcagtcaa ctatatgaat gccctcgcaa
      781 ggctcaccct ggcttaactc tgatcgctgc tccgcagctg gtttccgctt cgcgcttcct
      841 gtgtcaaacg caggaacacg tcctcaagcg attcgcgctg aggcgaaatc tccatcacgc
      901 taaagccctg ctggaccagc cgcgcattca cgaccggaat ctgctcgtca gttatcctca
      961 ggtggagaga ctcgtcacca ttgcggctga tggaaagctc cgggtcgaga gagagaagct
     1021 cgtaggcttc tgacaagcga tcgactctca gtttaatcca gtggtgttct gcaattaggt
     1081 cgccaaccga tccctggtaa agcaaacggc cggtttcaat gatggccacc cggttgcaga
     1141 tttgctcaac ctcatg
//
LOCUS       DATCGC010000941         1787 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_146812, whole genome shotgun sequence.
ACCESSION   DATCGC010000941 DATCGC010000000
VERSION     DATCGC010000941.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1787)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1787)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1787
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146812"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1787
                     /locus_tag="VIJ87_09140"
     CDS             <1..>1787
                     /locus_tag="VIJ87_09140"
                     /inference="COORDINATES: protein motif:HMM:NF013707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016903 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HEY5444614.1"
                     /translation="KVRLYRPFNRGAFLGSLPLSTQKIAVLDRTKEPGAPGDPLYLDV
                     IASLTEARAEGESKLKTEPNVIAGRYGLSSKEFTPAMVKAIFDELTSDRPKRHFTVGI
                     IDDVTHTSLAWDPSFRTEGDDVSASLFYGLGADGTVGANKNSIKIIGGETDRFVQGYF
                     VYDSKKSGAITVSHLRSSPRPIRSAYLIDRANFVACHQFEFVDKIDVLEYAAPGAVFL
                     LNASGDASTVWDRLPREMQEQIIEKRIRFFAIDAYALAKQVGMGGRINTIMQTCFFGI
                     SEILPRDEAITHIKKSIEKTYGKRGPEVVRRNCEVVDLALAELHEIPVPATVTATQSR
                     PPLVSALAPDFVQKISAVMMAGKGDLLPVSAFPVDGTWPVGTAKWEKRNLALEIPVWD
                     TKVCIQCNQCALVCPHAAIRAKVYDESALATHPSTFKSTPYRSPEYKGKMFTIQVAPE
                     DCTGCNLCVNVCPAKDRSNPKHKAINMEPQAPLRDSERSNYDFFLNLPELDRRDVVRL
                     DHKGSQFLEPLFEYSGACAGCGETPYLKMLTQLFGDRLLIANATGCSSIYGGNLPTTP
                     YTTNRDGRGPAWSNSLFEDNAEFGFGFRLA"
BASE COUNT          428 a          467 c          472 g          420 t
ORIGIN      
        1 aaggtccgtc tctatcgtcc gttcaatcgt ggtgcctttc ttggctctct gccgttaagt
       61 actcaaaaaa ttgcggtgct cgacagaacg aaggaacccg gagcccccgg ggatcctttg
      121 tacctcgacg tgattgcttc tctcaccgaa gctcgtgctg aaggagaatc aaaactcaag
      181 accgagccaa acgtgatcgc cggccgatac ggattatcgt cgaaggagtt tactcccgcg
      241 atggtaaaag cgatctttga tgagctgacg agcgaccgtc caaaacgtca cttcacagtt
      301 ggaatcatcg acgacgtcac gcatacgtca ctagcgtggg atccttcctt tcgaaccgag
      361 ggagacgatg tttctgcgtc gctgttttac ggtcttggtg cagacggtac agtcggggcg
      421 aacaaaaact ctatcaagat aattggtggc gagacggatc gatttgttca gggctacttc
      481 gtttacgact ccaagaaatc tggggcaatc acagtttcac acctgcgctc gagtccgcga
      541 cctattcggt ctgcttacct tatcgaccga gcgaacttcg ttgcctgcca ccagtttgag
      601 ttcgtcgaca agattgatgt gttggagtac gcggctccgg gcgcggtctt tttgttgaat
      661 gcctcgggcg acgccagcac cgtttgggat cgtctgccgc gtgaaatgca ggaacagatt
      721 atcgagaagc gaattcgttt ctttgcgatc gatgcttacg ccctcgcgaa acaagttggg
      781 atgggtggtc gcatcaacac catcatgcag acgtgctttt tcggcatttc cgaaattctg
      841 ccgcgtgatg aagcgatcac acacatcaag aaatcaatcg agaaaaccta cggcaagcgt
      901 ggcccggaag tggttagaag aaattgcgaa gttgtcgacc tggcacttgc tgaacttcac
      961 gagattccgg ttcccgcgac agtgacggcg acgcaatcac gacctccgct ggtctctgca
     1021 ctcgcacctg actttgttca gaaaataagc gccgtgatga tggctgggaa gggcgatctc
     1081 cttccggtca gcgcgtttcc tgtcgacggc acctggccgg taggaacagc caagtgggag
     1141 aaacgaaatc tagctctcga gattccggtt tgggatacca aagtctgtat tcagtgcaac
     1201 cagtgcgcac ttgtttgtcc acatgcggcg atacgggcga aggtctacga cgaaagtgct
     1261 ctggctaccc acccatcaac attcaaatcg acaccttatc gaagtcctga atacaaggga
     1321 aagatgttta cgatccaggt cgcgccagaa gactgcacag gttgcaacct gtgcgtcaac
     1381 gtctgtccgg cgaaagacag aagtaatcca aagcacaaag caatcaacat ggaaccgcag
     1441 gcgcctctgc gggattccga gcgctccaat tatgacttct ttctcaatct acccgaattg
     1501 gatcgcagag atgtcgtacg actggaccac aaaggttcac agtttctcga acccttgttt
     1561 gagtactccg gcgcatgtgc aggttgtgga gaaactccat acctcaaaat gctgacgcag
     1621 ttgttcggcg ataggctgct tatcgcaaac gctaccggat gttcatcgat ctatggaggc
     1681 aaccttccta caacgccgta cacgacaaat cgcgatggta gaggtccggc atggtcgaac
     1741 tccttgtttg aggacaacgc cgagtttgga ttcgggtttc gtttggc
//
LOCUS       DATCGC010000942         1003 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_180646, whole genome shotgun sequence.
ACCESSION   DATCGC010000942 DATCGC010000000
VERSION     DATCGC010000942.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180646"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(115..351)
                     /locus_tag="VIJ87_09145"
     CDS             complement(115..351)
                     /locus_tag="VIJ87_09145"
                     /inference="COORDINATES: protein motif:HMM:NF023183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3311 domain-containing protein"
                     /protein_id="HEY5444615.1"
                     /translation="MKKLLLVLAVVVLYVLHQDIWFWRSSRLVFGFIPIGLFYQGCFS
                     VAAALLMWLLVIYAWPSHLEQEVEETDTREDHRL"
     gene            683..922
                     /locus_tag="VIJ87_09150"
     CDS             683..922
                     /locus_tag="VIJ87_09150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444616.1"
                     /translation="MKRILLVIAVVALYALHQDIWFWRTAHPLVFGFVPIGLFYQGCF
                     SIAACLLMWLLVAFAWPAHLEEEIEHSDTEEGRPH"
BASE COUNT          245 a          256 c          255 g          247 t
ORIGIN      
        1 aacggctcgc caggaaatag tcttcagctt cttctttgcc tttcgcgtga cgaaaagcaa
       61 agatgccgat gtagagaaca gtcgcgagat agagaaagac gacgattgcg ggaatcaaag
      121 tcggtggtcc tccctggtat ctgtttcctc aacctcttgt tcaaggtgag acggccaggc
      181 ataaatcacc agcagccaca tcagcagcgc agcggccact gagaagcatc cttgatagaa
      241 gagcccgatc gggatgaaac caaaaaccag gcgggagctt cgccagaacc agatgtcctg
      301 atgaagcacg taaagtacta cgacagcaag aacaagcagg agtttcttca cggaggccag
      361 aacttagcaa gcctctcgaa ccagtgtcaa gcttttataa tattgaggtg ggttgagctt
      421 tctctgcgca acctctgtgt cctctgcgtc tctgcggtgt agattgcggt gaccgttagc
      481 cgcagagacg cagaggacgc agaggactac gcagaggaga atccagatta ggacacgacc
      541 attagccact attggttcta cagatccgga tccaaattct tagaagtctt gacagtcttg
      601 aacggggttc ttatagtccg tttcccaacg ttcaattagt aatttttcta aaacccggtt
      661 tcgaaaagct gagacgcatc ggatgaagag aattctcctt gtcatcgcag tagtcgcact
      721 ctacgcctta caccaggata tttggttttg gcgcacggcc catccgttgg ttttcggatt
      781 tgtccccatc gggcttttct accagggctg cttttctatc gcggcatgtc tactcatgtg
      841 gctgttagtg gcgttcgcct ggccggctca tcttgaggag gagatcgaac actcagacac
      901 cgaggagggg cgcccccatt gattccagca atctttgtat ttctctactt agccgcagtc
      961 ctctatatcg gcgtctttgc ctttcgcaaa gcgcgcggta aac
//
LOCUS       DATCGC010000943         1483 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_112758, whole genome shotgun sequence.
ACCESSION   DATCGC010000943 DATCGC010000000
VERSION     DATCGC010000943.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1483)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1483)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1483
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112758"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(237..1013)
                     /locus_tag="VIJ87_09155"
     CDS             complement(237..1013)
                     /locus_tag="VIJ87_09155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444617.1"
                     /translation="MKTLVQWSVSFLLVATALAQQQTYDAGFEPKPPSPFPPEFVDYQ
                     ILPNTFSRDHRYAFLYPKRSRLYELSESRLYVAALEPFHVVSEIPIGNRSLAWNAHGY
                     YVAKWRKDGSVAIFIVGAKWGPDTVWVIKLQHGIVAKRIDLTAVVRQEVLPDYKRSHS
                     QPYNDYYDFIFDSEDRQTVLDSEPVAERGWHFDEAGHIMIDCTCTTDPKPFDPQRWMV
                     RFQGVWDIARERFIETSITRIPPEPNQSLEPTAGRRDAQI"
     gene            complement(1112..>1483)
                     /locus_tag="VIJ87_09160"
     CDS             complement(1112..>1483)
                     /locus_tag="VIJ87_09160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY5444618.1"
                     /translation="SSESRSHERWLILFSLDLVRQNHLLTAAALFSCAACTTTQQLMY
                     TGRVVDSRGTPVPHAGLFISSMDDRGLEGIMHGWDADADGNFTFKFSEKVRHICAWSP
                     DSKRKGELDFPPQRDSVIVVR"
BASE COUNT          364 a          400 c          403 g          316 t
ORIGIN      
        1 acgcgtagcc caatccagcc cacgaaatcg ctctgacgcc cgtttttgaa cgcgacgtgc
       61 ggctcccacc gaatcggtgg gacgacaaca gtgtgctgca actgtggtgc agcgcacgat
      121 gacagtgcga ctgcgaacac gaggatcatc gcggggatca ttacatctaa cgagacggag
      181 ctgagccacc gctggcggga gcgagtgtgg caaactgact gaactgtttc atggaattaa
      241 atctgcgcat cacgacggcc agcggttggc tcgagcgatt ggttaggctc gggcggaatg
      301 cgcgtaatgg acgtttcaat gaacctctcc ctcgcgatgt cccaaacccc ttggaatcgc
      361 accatccaac gctgtggatc gaacggcttc ggatcggtcg tgcatgtgca gtcaatcata
      421 atgtgtcctg cttcatcgaa gtgccagcca cgctccgcaa cgggttcgct gtccagaacc
      481 gtctgcctgt cttccgagtc gaaaataaag tcgtaatagt cattgtatgg ctgcgagtgc
      541 gaccttttgt aatcgggcag tacttcctgg cggactacgg ctgttaagtc aatgcgcttc
      601 gccacgattc cgtgctgaag ctttatgacc cacactgtat ccggtcccca cttcgcgccg
      661 acgatgaaaa tggcgaccga accatccttc ctccatttgg ctacatagta cccatgtgcg
      721 ttccacgcga gactcctatt accaatcgga atctccgaaa caacgtgaaa gggttcgagg
      781 gcggcgacat acaaccgaga ctctgaaagc tcgtacagtc gcgaacgctt gggatagagg
      841 aaagcgtaac gatgatcacg ggaaaaggtg ttcggcagaa tctggtaatc cacaaattca
      901 ggtggaaaag gggacggcgg ctttggttcg aagccggcgt catacgtttg ctgctgagcg
      961 agcgcagtag caacgagcag gaaagaaacg ctccattgca ccaaggtctt catgagccta
     1021 acgagacaga gataagccac ggcagggtgt cgtggcaatc acgctgaact tatttcgaca
     1081 aggggccgtt ggcttcatcg attggttaga tctatcgtac gacaatcaca ctgtccctct
     1141 gtggcggaaa atccagttca cctttgcgct tcgaatcggg agaccaagca cagatgtgac
     1201 gaaccttctc tgagaacttg aacgtgaaat tgccatcggc atcagcatcc cagccgtgca
     1261 tgatgccctc cagtcccctg tcgtccattg aactgataaa aaggcctgca tgtggaacag
     1321 gagttccccg gctatccaca accctgcctg tgtacatcaa ctgttgagtg gtggtgcatg
     1381 cggcgcacga gaagagagcc gctgctgtta acaaatgatt ttgacgcaca agatctaacg
     1441 agaacaagat cagccaccgc tcgtgggagc gagactcgct tga
//
LOCUS       DATCGC010000944         3015 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_47229, whole genome shotgun sequence.
ACCESSION   DATCGC010000944 DATCGC010000000
VERSION     DATCGC010000944.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3015)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3015)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3015
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47229"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..239
                     /locus_tag="VIJ87_09165"
     CDS             <1..239
                     /locus_tag="VIJ87_09165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444619.1"
                     /translation="GDGRMRKVDAFLSRTAQGQWPTAVVWFEPAEGNGLDRYILERHG
                     VDDILLGHQFKEVRVSLDVLVNSDQAKKAGKVAN"
     gene            244..1902
                     /locus_tag="VIJ87_09170"
     CDS             244..1902
                     /locus_tag="VIJ87_09170"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF012789.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HEY5444620.1"
                     /translation="MGLILVFGPPGTGKTEYDLRQMEAWRNEGISLDEIAYVSFMKTA
                     VKDGAKRFGLTEQDNRWFRTLHSLCFRVLELTRDSVVDPKWMKEWAKKVGFQVADEEE
                     GGDLEDFSEAVTHIMATLEKPDAQTEGSRIKSLYDLSRLLSRSVEELDYVKKQPHPGT
                     TDYQWPGFSAGVYAHFVALYEKGKAEDQKFDFTDMLAEVLRRRFIVLPKWKRAVIDEI
                     QDMSPLQFAVIEKLWFGRCETILFSGDDDQAIFSFQGANAHEFLKYRNYPDTQVKILE
                     QTHRFGPNGVRYAGLITDRIKERQPKNVIGLAGRENPIRNKLSFDPAEVMDGDLLLHR
                     HVAGCSEIADRLVDEGVPFYNERRGSNPFKNASELNAYLAFRDLSEGKSITATGLQYL
                     LKKVPSLTVDKRRLVFHGVKKKAEALKGNETVSFGDLSSFFTEGFMKAIREKNRRDVD
                     LNFGDYYDKLNQARYDFEKLPKTRIGTIHASKGRQAKRVWLWAETFPKALAKAGDDEH
                     RVAFVGATRMQHELMIVRERLIGDWTREYRYPETDNTVLVRTNE"
     gene            1920..2315
                     /gene="ssb"
                     /locus_tag="VIJ87_09175"
     CDS             1920..2315
                     /gene="ssb"
                     /locus_tag="VIJ87_09175"
                     /inference="COORDINATES: protein motif:HMM:TIGR00621.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEY5444621.1"
                     /translation="MATLNEVRLIGNLTKDPESRAAGSHTIVGFSIAVNRKSKGSDGQ
                     AKEEVSFFDCEAWNKTGELVMQYCKKGRQVLVCGRLQQDRWESQEGQKRSKVKVVADN
                     IQFLGAKPESDGGAGESASAGIGDPDAPF"
     gene            2317..2727
                     /locus_tag="VIJ87_09180"
     CDS             2317..2727
                     /locus_tag="VIJ87_09180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444622.1"
                     /translation="MKIEFVVPGPLMGYKQTTWKTMFHPNERARSKAYGQFKKNVLLL
                     SMEAGAPNMGTALKEMNPKLSVEVFWKDEPRIDWKNVYGAIEDGIWYEDDRYVAPGKE
                     SGVQCNTGREEVKVIIEINAKKKTGSGVRGSKVT"
     gene            2788..>3015
                     /locus_tag="VIJ87_09185"
     CDS             2788..>3015
                     /locus_tag="VIJ87_09185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444623.1"
                     /translation="MSENPSKELSVPDAPSNGGLLERFDLADDKKIIEAMAKRVTAGF
                     TYKVNGKHGLSSAGALWAAREFAKQGEVYRVQ"
BASE COUNT          775 a          720 c          933 g          587 t
ORIGIN      
        1 gaggtgacgg tcgcatgagg aaggtggatg cttttctcag ccggaccgcc cagggccagt
       61 ggcccacggc cgtcgtctgg ttcgagcctg ccgagggaaa cggcctggac cgctacatcc
      121 tggagcggca cggcgtggat gatattcttc tcggacatca gttcaaggaa gtacgggtga
      181 gtctggatgt cctggtcaac agcgaccagg cgaagaaggc tggaaaggtg gcgaactaaa
      241 gatatgggtc tcattctagt ctttggtcct ccaggcaccg gcaagacgga gtacgacctc
      301 cggcagatgg aagcttggag gaacgaagga atttctctag atgagattgc ctacgtaagt
      361 ttcatgaaaa cagcagtcaa ggatggggca aaacgattcg gcctcaccga gcaggataat
      421 cggtggttca ggacgctcca ttcgctttgt ttccgcgtcc tcgaactgac ccgcgatagc
      481 gtcgtcgatc cgaagtggat gaaggaatgg gcgaagaaag ttgggttcca agtagcggat
      541 gaggaagagg gcggagatct tgaggatttt agtgaagccg tgactcacat catggccacg
      601 ctcgagaagc ccgatgcgca aaccgaaggg tccaggatca agagtctgta tgatctgtcg
      661 cggcttcttt caaggtcggt ggaagaactg gactacgtca agaaacagcc tcatcccggg
      721 acgacggatt atcaatggcc tgggttttct gccggagtct atgcccattt cgtggcactt
      781 tacgaaaagg gcaaggcaga agatcagaag ttcgatttta cggatatgtt ggcggaagtc
      841 ctgagaaggc gattcatcgt cctgccgaaa tggaagaggg cggtgatcga tgaaatccag
      901 gacatgagtc cgcttcagtt tgcagttatt gaaaaactgt ggttcggccg ctgcgagacc
      961 atccttttca gcggggatga tgatcaggcg attttcagtt ttcaaggagc gaacgcccac
     1021 gagtttctca agtatcggaa ctatccagat actcaggtga aaattctgga gcagacgcat
     1081 cgcttcggcc ccaatggagt tcgctatgca gggttgatca cggatcggat caaggaaagg
     1141 cagccgaaaa acgtgatcgg cctggcaggg cgcgagaatc ccatcagaaa taaactctcc
     1201 ttcgatcctg cggaagtgat ggacggagat cttcttcttc atcgtcatgt ggcgggatgc
     1261 tccgagattg cggatcgcct cgtggacgaa ggagtgccgt tttacaacga gagaagaggg
     1321 tcgaatcctt tcaagaatgc ctcggaactg aatgcttatc ttgccttccg agatctttca
     1381 gaaggcaaat ccatcacggc caccggcctt caatatctcc tgaagaaagt tccgagtttg
     1441 accgtggata aacgaaggct ggtattccac ggggtaaaaa agaaggcaga ggccttaaaa
     1501 ggaaatgaga cagtttcttt cggggatctg tcctcatttt ttaccgaagg gttcatgaaa
     1561 gccattcggg aaaagaatcg tcgggatgtg gacctgaatt ttggagacta ctacgacaag
     1621 ttgaaccagg cccgatacga ttttgagaaa ctcccgaaga cccggatcgg aacgattcac
     1681 gcttcaaaag gtcggcaggc aaagcgcgtc tggctttggg cagaaacctt tccaaaggct
     1741 ctcgctaaag cgggcgatga tgagcatcgt gttgccttcg tcggcgccac caggatgcag
     1801 catgagctga tgatcgtgcg tgaacgactc ataggcgact ggactcgaga gtaccgatat
     1861 cctgagacgg ataatacagt tcttgtacga accaacgagt gaaaggaagg aggatcagca
     1921 tggcgactct gaatgaagtg cggttgatcg ggaacctgac gaaggatccc gagagccggg
     1981 cggccgggag ccacacgatc gtgggtttct cgatcgcggt gaaccggaag tcgaagggct
     2041 cggacggcca ggcgaaggaa gaggtgtcat tcttcgactg cgaagcgtgg aacaagacgg
     2101 gcgagctcgt gatgcagtat tgcaagaagg gccgccaggt cctcgtctgc ggccggctcc
     2161 agcaggatcg ctgggagagc caggaaggac agaaacggag caaggtcaag gtcgtcgccg
     2221 acaacattca gttcctcggc gcgaagcccg aaagcgacgg cggcgccggc gaatccgcga
     2281 gtgccggcat cggagatccg gacgctccgt tctagcatga agatcgagtt cgtcgtcccg
     2341 ggcccgctca tggggtacaa acagaccaca tggaaaacga tgttccatcc caacgagcgg
     2401 gcccggtcga aggcctacgg gcagttcaag aagaacgtcc tcttgctctc gatggaagcc
     2461 ggagctccga acatgggcac tgcccttaag gaaatgaatc cgaagctatc cgtcgaggtt
     2521 ttctggaagg acgaaccccg catcgactgg aagaacgtat acggtgcgat cgaagacgga
     2581 atctggtatg aagacgaccg ctacgtagct cccgggaaag aatccggagt gcagtgcaac
     2641 acgggtcgcg aagaagtgaa ggtcatcatc gaaatcaacg cgaagaaaaa gactggctct
     2701 ggcgtgaggg gaagcaaagt aacttgacgt aatgataggt aaacgggtat tcttcggaag
     2761 ctcgaaaagg taaacgagga aacgaacatg tcggaaaatc cgagcaagga gctgagcgtg
     2821 cctgatgccc cgtcgaacgg cggactcctc gagagattcg acctggcgga cgacaagaag
     2881 atcatcgagg ccatggcgaa gcgtgtgact gcggggttca cctacaaggt gaacggcaag
     2941 cacggcctga gctcggcagg cgccctttgg gcggcccggg agttcgccaa acagggcgaa
     3001 gtctaccgcg tccaa
//
LOCUS       DATCGC010000945         1408 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_411862, whole genome shotgun sequence.
ACCESSION   DATCGC010000945 DATCGC010000000
VERSION     DATCGC010000945.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1408)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1408)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1408
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_411862"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1399)
                     /locus_tag="VIJ87_09190"
     CDS             complement(<1..1399)
                     /locus_tag="VIJ87_09190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY5444624.1"
                     /translation="MLSSSVPFAVSAAQPKVTWSESHLNLQLSPGGGDVRQVTFTSDH
                     NLQNVTVESVPEIAGLVSVQPNTIATVFADQAQTVSLFFSIPAGTSFGLHEGTIHVRS
                     GNQTIPQTLKVSIDVSQSVDLPSEIEPLSPAVISLSGVSEKDFNPSSSTIGLGISGST
                     FNTDPTTVEILINGIQVPADSVVITPTVITVPVNFFNDKNELSFFGFDAEGRIVHKAA
                     TLWAGNFTLTVSIKDENNQPASGALVTARLGDDKEVKATETSVNGSVLFHNLPNRTIV
                     LEASASGNRIASVATNGSAFFEELKLKGFNSPSPIDNNDLSQGTAGWAIGTAPVQIIP
                     HVEGTFVPLEDPTPLSAQSSSQQLSRAERAAQLAANPPGTSTTSPSPENLPLSLEEGD
                     QDLVLNTSGEGPESISRTFQIEEGVQEIKVRYKFVTSEVPGGYFGTQYNDYFNVAIRS
                     QGAGGSASESQTMNGL"
BASE COUNT          324 a          351 c          372 g          361 t
ORIGIN      
        1 caagaccgtt catcgtctgg ctttcagagg ctgaaccacc ggcgccctga ctccgaatgg
       61 cgacattgaa gtaatcgtta tactgcgttc caaaatagcc gcctggtact tcgctcgtga
      121 caaacttgta gcgaaccttg atctcctgaa cgccctcttc aatttggaac gtgcgggaga
      181 tgctctccgg tccctcacct gatgtattca acacgagatc ttgatctccc tcttcaagtg
      241 aaagtggaag gttttcggga ctcggtgaag ttgtgctcgt gccgggaggg tttgctgcca
      301 actgggctgc gcgctccgcg cgtgaaagct gttgactgct tgattgcgct gatagcggtg
      361 tcggatcttc taacggaacg aatgttccct caacgtgcgg aatgatttgc actggagcag
      421 tgccaatcgc ccatcctgcg gtgccctgac tcaggtcatt gttatcaatg ggacttggcg
      481 aattgaaacc ctttagtttg agttcttcaa aaaaggcgct gccattagtt gcgaccgacg
      541 cgatgcggtt gccactcgcc gaggcttcga gaacgatggt gcggttaggc aggttatgaa
      601 ataagacact gccgttcacg ctagtttctg tcgccttaac ttccttgtca tcaccgagtc
      661 gagcagtaac tagagccccg ctcgccggct gattgttctc atctttgata gagacggtga
      721 gcgtaaagtt accggcccaa agtgtcgccg ctttgtgcac gatgcggcct tcagcgtcga
      781 agccgaaaaa gctcaactcg tttttgtcat taaagaagtt cactggaacg gtaataacgg
      841 tgggcgtgat tacaacgcta tcagcaggga cttgaattcc gtttatcaaa atctctacgg
      901 ttgttggatc agtattgaag gtgctgcccg aaattcccag tccgatagtg ctactactcg
      961 gattgaagtc tttctcggaa actccgctga ggctgattac ggccggtgag agcggttcaa
     1021 tttcagatgg caagtcaacc gattgtgaaa catcgataga aaccttcagt gtttgaggaa
     1081 tcgtctggtt acctgaccgc acatgaatcg tgccttcatg caaaccaaaa ctagttcctg
     1141 cgggaataga gaaaaacagc gagacagttt gcgcttgatc tgcaaacacg gtcgcgattg
     1201 tattgggctg tactgacacc aggccagcaa tctctggtac cgactcaact gtaacgttct
     1261 gcaagttatg atcactggtg aaggttacct gtcttacgtc acccccgccg ggcgacagtt
     1321 gaagattgag gtggctttct gaccaggtga ctttgggttg cgccgctgag acagcgaaag
     1381 gaacgctact gctcaacatt gccagtgc
//
LOCUS       DATCGC010000946         2292 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_146921, whole genome shotgun sequence.
ACCESSION   DATCGC010000946 DATCGC010000000
VERSION     DATCGC010000946.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2292)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2292)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2292
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146921"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1254
                     /locus_tag="VIJ87_09195"
     CDS             <1..1254
                     /locus_tag="VIJ87_09195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444625.1"
                     /translation="HVGRLSQLPFVDVLYIRCDWRDVQTQPGRLNLNPVFKLTLDAAK
                     RNNQRVAFRIQMSNTEGQPNRLALPDFLQNRIPLVKIGKTYGSSFDFVEPRYDHPAFL
                     SAFREINELLVAEFDNNPLMEFVDLMMYGFWGEGHTSNLPNPFPDYLTAEKTLVALTQ
                     IQLDAWKNIPLAVNTQPDISGVGNNRILDMCVRAGCWLRSDSIVIEEPIQIEELANRP
                     PWLPIVMEDGYYRRYSIDPNYIPADEVGINVLEKWMLHALDLGANYWSLWTESANLAQ
                     YYERYPKGFDTLRRRMGYRVRPSWVWQRKRYNTDELIVAFVNDGVAGIPGVLRVYIES
                     LDGRFRIGGGLDAGHPFGGKLRQASFVLPKGMDGQQLKIRAEIETKAGIRRPVSWSCA
                     QPLNTDGSLLIQLIRRDDKRWRKGV"
     gene            1301..2212
                     /locus_tag="VIJ87_09200"
     CDS             1301..2212
                     /locus_tag="VIJ87_09200"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEY5444626.1"
                     /translation="MEYGIGIDLGGTNIKIVAISREGQILDRSTCETETDSPDSWIKT
                     IKTKILEIELTRKESARWIGLAAPGLAARDNLSIASMPGKLRGLEGLNWTEALQTSHR
                     VPVLNDAHAAMMGEAWLGAAVGYQNVVLITLGTGVGGAILADGRLLKGNCGRAGHLGH
                     ISLDADGPLDIVGTPGSLELAIGNSTLAKRSAGRFTSTRQLVEAHINNDMVATEIWLT
                     SVHHLAAGITSIINAIDPEVVIIGGGIANAGPALFNPLKDFLEQIEWRPLGQAVRIVR
                     AALDDFAGTIGAVYYAIKSWEEHPGVD"
BASE COUNT          597 a          567 c          602 g          526 t
ORIGIN      
        1 catgtcggca ggctatcaca attgccattc gtcgatgtgc tttacatcag gtgcgattgg
       61 cgagatgtgc aaacgcaacc gggccggctg aacttgaatc cagtctttaa actaacttta
      121 gatgccgcga aacgtaacaa tcagcgcgtc gcgtttcgca tccaaatgtc taacaccgaa
      181 ggacaaccaa accgactagc attacctgac ttcctccaaa acagaattcc cctggtaaaa
      241 attggcaaga cttacggcag tagcttcgac tttgtagaac cgcgatacga tcatccagca
      301 tttctgagcg cgtttcggga aataaatgaa ctgctagttg cggagttcga caataacccc
      361 ttgatggaat ttgtggactt gatgatgtat ggattctggg gtgaaggcca cacaagtaac
      421 ttgccaaatc cctttcccga ttatctgacg gctgaaaaaa ctctcgtagc actaacgcag
      481 attcaattgg acgcgtggaa gaacatcccg ctcgcagtga atacacaacc cgacataagc
      541 ggtgttggaa acaatcgcat cctggatatg tgcgtacgcg ccgggtgttg gttgaggtcg
      601 gatagcatag tcatcgaaga gcccattcag atcgaagaac tcgctaatcg cccgccatgg
      661 ctccctatag tgatggaaga cgggtactat cgccgataca gcatcgatcc aaattacatc
      721 cctgccgacg aagtgggcat taatgtcctc gaaaagtgga tgcttcatgc cttagacctt
      781 ggcgcgaact attggtcgct ttggactgag tctgccaacc tggcccaata ttatgaacgc
      841 tatccgaaag gcttcgacac tctgcgacga cgtatgggct accgagtccg tccctcatgg
      901 gtctggcaga gaaaacgata taacactgac gaattgattg ttgctttcgt taatgatggc
      961 gttgcaggaa ttcccggagt gctcagagtt tacatcgaga gtttagatgg acgattccgg
     1021 attggaggtg gtctcgatgc tgggcatccc ttcggaggca agctacgcca ggcatccttt
     1081 gttttgccga aggggatgga cgggcaacaa ctaaagattc gagccgaaat tgaaacgaaa
     1141 gccgggattc gtcgacctgt tagctggtcg tgcgcacaac ctctaaacac agatggctcg
     1201 ttattgatcc agttgattcg acgcgatgac aaaagatgga gaaaaggcgt ctgaaaggtt
     1261 aacgcgattc gggatcgcgc ggtctttggg gacaaactag atggaatatg gaatcggtat
     1321 tgatctcggc ggaaccaata tcaagattgt ggcaatctct cgcgagggcc agattcttga
     1381 tcggtcaaca tgtgaaaccg aaactgattc tccagactcc tggatcaaga caatcaaaac
     1441 gaagatcctg gaaattgagc tgacccgaaa agagtcggca cggtggatcg gattagccgc
     1501 cccaggtctc gctgctcgag acaacctctc catcgcaagc atgcccggaa agttgcgagg
     1561 cctcgaaggg ctcaattgga cagaagcttt acagacatca catcgagtcc cggtacttaa
     1621 tgatgctcat gccgcaatga tgggtgaagc ctggcttggc gcagcggtgg gctaccaaaa
     1681 cgttgtgcta ataacgctcg gcactggcgt cggtggagca attctcgcag atggccgttt
     1741 gttgaaaggc aattgcggaa gggctggaca tcttggacat atcagcttag atgctgatgg
     1801 tccactcgac attgtcggca caccgggaag tcttgagttg gccatcggaa attccacctt
     1861 agcgaaacgg tctgctggac gattcacgtc aacgcgccaa ctagtcgaag cacacattaa
     1921 caacgacatg gtggccaccg agatctggtt gacgtctgta catcatctgg ccgcgggaat
     1981 tacctcgata ataaacgcga tcgatccgga ggtcgttatc atcggtggcg gaatcgcaaa
     2041 cgcgggacca gctctattta atccgctcaa ggattttctc gaacaaattg aatggcgtcc
     2101 gctgggacaa gcagtgcgta tagtccgtgc tgcgcttgac gactttgccg gaacaattgg
     2161 cgctgtctac tacgccatca aaagttggga ggagcatcca ggcgtcgatt agatcggaga
     2221 cttctatagt cacactggtc cacttacgat cttgaacctg accccccgtc ccatcagacg
     2281 tcggacctcc ga
//
LOCUS       DATCGC010000947         1876 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_47271, whole genome shotgun sequence.
ACCESSION   DATCGC010000947 DATCGC010000000
VERSION     DATCGC010000947.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1876)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1876)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1876
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47271"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            189..1082
                     /locus_tag="VIJ87_09205"
     CDS             189..1082
                     /locus_tag="VIJ87_09205"
                     /inference="COORDINATES: protein motif:HMM:TIGR00147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HEY5444627.1"
                     /translation="MSTRKATLISNPKTGRYVSKRKTIQELAADLSALGIDVELKLTT
                     GPGDATEFAARAANNGSTDVIVAGGDGTINEAIQGMVGTNARLGILPRGTANVLAREL
                     GLPMDVDEALKIAAQGHSRSIHFGVAINETTGARRHFVLMAGIGLDASVVRRVHPGLK
                     KRFGRGAFWLSGLSHLATWHPQKFTLEIDGSNYSATFAAIGKATRYGGDLMVTPRARL
                     EEPEFEVCIIETFSRVRYLQFLSYAMRSGMPNDRKGVRFLKTSRVRALGEAPVQVDGE
                     LVGQLPMTFEIVPQSLEVIVP"
     gene            complement(1238..>1876)
                     /locus_tag="VIJ87_09210"
     CDS             complement(1238..>1876)
                     /locus_tag="VIJ87_09210"
                     /inference="COORDINATES: protein motif:HMM:NF024578.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEY5444628.1"
                     /translation="GELVGMVLDLLIRGRSKGKVSLDDVMRAMYDEFYLKSSNNSYYL
                     HGRGYQPEDLERVASRVAGIDLSEFFKLHVFDTATLPYEEAFRPVGLQVTRNPMKEPF
                     NAGLSLQFDNPRAPMIENVRNNSPAENAGLQSGDEIVNVAGVSVTRNSWLSTLARYKT
                     GQSIPITVKRNRQTIKANIVLGEPERFEWKIEDRRDATAEQKQLRAVWLSGK"
BASE COUNT          444 a          469 c          493 g          470 t
ORIGIN      
        1 accagcaata caatcagctc gcgttgtgac ggagtctctt tttgttgttc catggaaagg
       61 cgacttacga catatttatc ggacatgtgt gtgcgaatga ttgagttcgt cactcccggt
      121 aattaccttt tgctcacgaa tggatagtcc ataggcggca tcgcagttgc caattgactg
      181 ctttctatat gtcgacccga aaagcaacac taatttccaa tccgaagaca ggacgttatg
      241 tctcgaagcg aaaaaccatt caggagttgg cagcagatct gagcgcattg ggtatcgatg
      301 tcgaattgaa attgacgacg ggaccaggag acgctacgga atttgcggcg cgagccgcta
      361 acaatggtag tacggacgtg attgtcgcag gtggtgatgg aacgatcaat gaagcaatcc
      421 agggtatggt tggaaccaat gcgcgcctgg gaattcttcc tcgagggacc gccaacgtac
      481 tcgctcgtga attaggtctg ccaatggatg tggatgaggc gctgaaaata gcggctcaag
      541 gacactcacg tagcattcat tttggagtag caatcaatga aacgaccggc gcacgtcgtc
      601 actttgtttt gatggctgga atcggactcg atgcttccgt cgtaagacgt gttcatcccg
      661 gcctaaagaa gagatttgga agaggcgcgt tttggctgtc gggactaagt catctggcga
      721 catggcatcc gcaaaagttc acgctcgaga ttgatggttc caattacagc gcgacgtttg
      781 ctgcgattgg aaaagcgact cgatatggtg gcgatctaat ggtgactcca cgtgctcgac
      841 tcgaggagcc ggagtttgaa gtttgcatca ttgaaacgtt cagcagagtt cgctacttgc
      901 agtttctttc ttacgctatg cgaagcggga tgccgaacga cagaaaaggt gtgcgcttct
      961 taaagaccag tcgagtgagg gccctcggtg aagcgcctgt gcaagttgat ggtgaactgg
     1021 tcggacaact gcctatgacg tttgagattg tcccgcagtc actcgaagta atcgttcctt
     1081 aatgttcgat ggccgatatg cttggagagc gaccgaggca gtagcccgac tatcaaggag
     1141 ggctcgggtt gcgctgatca acggccaccc tacgctgagc cctccttgac agtcgggcta
     1201 ctgccccggt cgctgtctaa gcatatcggc cattcttcta cttcccactc agccacaccg
     1261 cccgtaactg cttttgctct gcagtcgcat cgcgacgatc ttcgatcttc cactcgaatc
     1321 gctctggttc gccaagaacg atgttagcct ttatcgtttg tcgattccgc ttgaccgtta
     1381 tcggaattga ctgtcccgtt ttgtatctcg cgagcgtcga caaccagcta tttcttgtaa
     1441 cgctgacgcc ggcgacatta acaatttcgt caccactctg aaggcctgca ttctccgcag
     1501 gtgaattgtt tcggacgttc tcaatcatgg gagcgcgagg gttgtcaaac tgtagtgata
     1561 ggcccgcatt aaacggctct ttcatcggat ttctggtgac ctgcaaaccc acgggtcgaa
     1621 aagcttcttc gtaggggaga gtcgccgtgt cgaagacgtg aagtttgaag aactcggaca
     1681 agtcgatgcc cgccactcgt gaagccacgc gttcgagatc ctcgggttga taaccacggc
     1741 catgaaggta gtaactattg ttcgagctct tcaggtagaa ctcgtcgtac atcgctcgca
     1801 ttacatcgtc taaagaaact tttccctttg aacgaccacg aatcaacaaa tccaacacca
     1861 tacctaccaa ctcgcc
//
LOCUS       DATCGC010000948         1005 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_18005, whole genome shotgun sequence.
ACCESSION   DATCGC010000948 DATCGC010000000
VERSION     DATCGC010000948.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1005)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1005)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1005
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18005"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..423)
                     /locus_tag="VIJ87_09215"
     CDS             complement(<1..423)
                     /locus_tag="VIJ87_09215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444629.1"
                     /translation="MVETQLSWSDLSAEAHDLLKGRLVGLWGATSDAGAFESWSIDKQ
                     QALVLLLQRMRDRGLWHLVKQVTNVYGEGGVGIQFFAWPMIESTLERRDDFTRRFANH
                     KDTSGGFYEKERDTAVLHFLFQEGDPRTWYVHFDLYSPV"
     gene            complement(429..761)
                     /locus_tag="VIJ87_09220"
     CDS             complement(429..761)
                     /locus_tag="VIJ87_09220"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HEY5444630.1"
                     /translation="MDDDNDQSFDLPEERRVYDRSRLIVDVFFDGKDATGVASTKDIS
                     IGGFYMTTQAVIPEGALLLVRIPFGLGKQVVCNAEVVYIDGRGVGVRFQSLSEEAQAL
                     LESELAIP"
     gene            complement(820..>1005)
                     /locus_tag="VIJ87_09225"
     CDS             complement(820..>1005)
                     /locus_tag="VIJ87_09225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444631.1"
                     /translation="RETFPALTADGRMEFAEQLVDLDPLLFNGKVGSAFTRLSSTELA
                     NVSSGGGMVPTYIISKK"
BASE COUNT          253 a          295 c          220 g          237 t
ORIGIN      
        1 aaccggactg taaagatcga agtgcacata ccaagttcgc gggtcgcctt cctgaaaaag
       61 aaaatgaagc accgcagtgt ctctctcctt ctcgtaaaag ccgccactcg tgtccttgtg
      121 attcgcaaaa cggcgtgtaa agtcgtcgcg tcgttccagt gtcgattcaa tcatcggcca
      181 cgcaaaaaac tgaataccaa ctccgccttc accatagaca ttggtaactt gctttacgag
      241 gtgccagagc cctctatctc gcattcgctg tagcaataaa accagcgctt gttgcttgtc
      301 aattgaccac gactcaaatg cgccggcatc gcttgtagct ccccacaatc cgaccaatct
      361 gccttttaga agatcgtgcg cttcagcaga caagtctgac caacttaact gcgtttcaac
      421 catttcggtt aggggatagc cagttcactt tccaacagcg cctgcgcttc ctcagatagg
      481 ctttgaaagc ggacgccgac gccacgacca tcgatgtaaa caacctcagc gttacaaacc
      541 acctgcttgc cgagtccaaa aggaatgcgc accaacagca atgccccttc gggaatcact
      601 gcttgtgtgg tcatgtaaaa cccaccgata ctgatgtcct ttgtacttgc gacaccggtc
      661 gcatccttgc cgtcaaagaa gacatctaca atcaatcggg agcgatcata aaccctgcgc
      721 tcttccggca agtcaaaact ctggtcgttg tcgtcatcca cgcgatatgc tcctgggcaa
      781 gataatccaa gaacccgttt ttgattgtac cgttttacgc tactttttgc tgatgatgta
      841 cgttggcacc atgccaccgc ccgaactgac gttcgccaac tctgtagagg atagtcgcgt
      901 aaacgctgat ccgaccttgc cgttgaatag caacggatcc aaatcgacca actgttcggc
      961 gaattccatc cggccgtccg cggtgagcgc cggaaaagtt tcacg
//
LOCUS       DATCGC010000949         2662 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_146954, whole genome shotgun sequence.
ACCESSION   DATCGC010000949 DATCGC010000000
VERSION     DATCGC010000949.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2662)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2662)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2662
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146954"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..471
                     /locus_tag="VIJ87_09230"
     CDS             <1..471
                     /locus_tag="VIJ87_09230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444632.1"
                     /translation="LSARGDEPGLMTRMNTYRYDYRGVAQFVTSQLQPGDLVIPGIPH
                     VIEYYSGRPGDYFLNTLFASKVSYNQTLAEPRLSDKFRGLPALRNLTELEEVTHRGGR
                     IWLIDAPSSSSTRLQSPDVAEYLDKNSKVVFESYRAKVLLIQGAKQPTAVATSP"
     gene            complement(474..1322)
                     /locus_tag="VIJ87_09235"
     CDS             complement(474..1322)
                     /locus_tag="VIJ87_09235"
                     /inference="COORDINATES: protein motif:HMM:NF018669.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008146 - sulfotransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase family 2 domain-containing
                     protein"
                     /protein_id="HEY5444633.1"
                     /translation="MTRAAAAEEAVIFLHVPKTAGTTLNRLIEWEYPLFEMYSVDPVF
                     FRWSASHLWQLPARRLKRTRMFKGHMLFGLHEILPQPATYVTVLREPIDRVISAFYFM
                     RSYVLHPAYWQFRRENWTLEDFVRRSRRENVQSKILAGAEYNSPCTEEILEQAKENLF
                     RYFSVVGLSEHFEESLALMKLRFGWKLERYSSFNVTRARPKKRDLPQPTLDLIAEKNA
                     FDLALYECATKLFEDAVNNHAAEVNTIARDLEAARARTQGPLSSALFSIRAAGRKAIS
                     RAYSSV"
     gene            complement(1396..2499)
                     /locus_tag="VIJ87_09240"
     CDS             complement(1396..2499)
                     /locus_tag="VIJ87_09240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444634.1"
                     /translation="MRPRKFSNVIQTSICGLAVATVGQFPVFAEREPPIRTGLWVIQP
                     LAEDSNKLSDFAADVRANPQLTGVCIHLHWKDVEKEAGKPDFSAIDKMVAVLRGIGMK
                     YQLCLQPGVNTPASVYEEGAQSFATRVTNPHRPNFGQGILIPVPWDPIYQQNFSRAIK
                     QLGERYADDPLCVSVVLTCANFMSAEMHLPKTREDLAKWAALGNYQEKLLDVYKKYTD
                     EWARAFPKQEISLHVSKVLDLPPEFFERIVDYGLSKYPERFTIQNCQLTGRREDTGMM
                     SYDLVQKYRDRAHHGFQSLARLSRPNERMGSIEMAVLNMVHAQGEYWELWHGDGMSVE
                     TSTAVARAWEEARRVGYDAYKKKLIAEGKYRER"
BASE COUNT          591 a          723 c          688 g          660 t
ORIGIN      
        1 ctttccgcca gaggggatga accggggttg atgacacgta tgaacactta tcgttacgac
       61 taccgcggtg tcgcgcaatt tgtgacgagt caactccagc caggcgacct cgtcatccca
      121 ggcatcccgc acgtgattga atattactct ggaaggccag gcgattattt tctaaacacc
      181 ctgttcgctt cgaaggtctc atataatcag acactcgcgg aaccgagact ttccgacaag
      241 tttcgtggtt tacctgctct tcgcaatctg acggagctgg aggaggtaac tcatcggggc
      301 ggtcgtattt ggcttattga cgccccttct tcttcatcga cgagattgca aagcccggat
      361 gtcgccgaat atttggataa aaactcgaag gtcgtttttg aaagctaccg tgcaaaggta
      421 ttgcttattc aaggcgcgaa acagcccacg gctgtggcta catccccttg agtctagacg
      481 ctagagtaag ctctgctgat agctttcctt ccggcagccc gaatcgaaaa cagcgccgag
      541 ctgaggggac cttgggttcg cgctcgcgct gcttccaggt cacgagcgat agtattgact
      601 tcggcggcgt ggttgttgac cgcatcctcg aatagttttg ttgcgcactc gtagagcgcg
      661 aggtcgaacg cgttcttctc ggcgattaag tcgagagtgg gttgagggag atcgcgtttc
      721 ttgggccgag cgcgagtcac gttgaagctc gagtaacgct ctagcttcca gccgaaacgc
      781 agtttcatca gcgcaaggct ttcttcaaaa tgctccgata gaccaaccac gctaaagtat
      841 ctaaagaggt tctccttggc ctgttcaaga atctcctccg tgcaaggtga gttatactcg
      901 gctcccgcga gaatcttgga ttggacgttt tctcttcgtg aacgcctgac aaaatcctcg
      961 agggtccaat tctctcgcct gaattgccag tacgcaggat gcaacacata gctgcgcatg
     1021 aagtaaaagg cggagatcac gcggtcgatg ggctcgcgca acacggtaac gtaggtcgct
     1081 ggctggggga ggatctcatg aagaccaaac aacatgtgac ccttgaacat acgcgtcctc
     1141 tttaggcgtc gcgcagggag ttgccatagg tgcgacgcag accacctgaa gaaaacggga
     1201 tcgactgagt acatctcaaa gagaggatac tcccactcga ttagccgatt gagcgtggtg
     1261 cctgcggtct ttggcacgtg aagaaaaata accgcctctt cagcagcagc ggcccgggtc
     1321 attcgtcggt tccctatcgg ccccaaactt taagagagat tgcctctcga tctgatctta
     1381 tttgcagaac agtcatcatc gttcacgata tttaccttca gctatcagtt ttttcttgta
     1441 ggcgtcgtaa ccaacccgtc tggcctcttc ccaggccctt gcgacggcag ttgaagtttc
     1501 cacgctcatg ccatccccgt gccacagttc ccagtattcg ccttgtgcat ggaccatatt
     1561 gaggactgcc atctcgattg aacccatcct ctcattggga cgagacaaac gggcgagact
     1621 ctgaaagccg tgatgggcgc ggtcacggta cttttgcaca aggtcgtagc tcatcatgcc
     1681 ggtatcttct ctgcgtcccg tgagctggca attctgaatt gtaaatctct ccgggtattt
     1741 gctcagccca taatcgacga tgcgttcgaa gaactccgga ggcaggtcga gcacctttga
     1801 tacgtgcagt gatatctcct gttttgggaa cgccctggcc cattcatcgg tgtacttctt
     1861 gtagacatca agcagcttct cttggtagtt tccaagcgct gcccatttcg caagatcttc
     1921 acgcgttttt ggcagatgca tttcggcact catgaaattg gcgcaggtaa gcacgacgct
     1981 tacgcacaag ggatcgtccg cataacgttc tccgagctgc ttaatcgccc gcgaaaagtt
     2041 ttgttgataa atcggatccc acgggactgg aatgagaatc ccctggccaa aattgggccg
     2101 atggggattc gtaacgcgtg ttgcaaaaga ctgcgcgccc tcttcataga cagaagccgg
     2161 cgtattaacg ccaggctgga ggcagagctg atatttcatt ccaatgccac ggagcacggc
     2221 caccattttg tcgatcgcgc taaaatccgg tttgccagct tccttttcga cgtccttcca
     2281 atgaagatga atgcatacgc cggttagttg gggatttgcg cgtacgtcgg ccgcgaaatc
     2341 gctcaatttg ttgctatctt cagctagcgg ctgaataacc cataaacctg tccggatcgg
     2401 cggctcccgc tcagcaaaga ccgggaactg acccacggtt gcaacggcta gaccacagat
     2461 cgacgtttgg atgacgttgg agaatttgcg aggccgcatc tgtttttgaa tactggcttt
     2521 tccaatcact ttccttggcc gctcctcaga tgtttgtcga aaaactcctt gatcatgggt
     2581 cgaaacttca ggcctccgac cccgtgccct cgtccggtgg caatctccag ggtcgcatcc
     2641 actccagctc ccttgagcgc cg
//
LOCUS       DATCGC010000950         1929 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_279748, whole genome shotgun sequence.
ACCESSION   DATCGC010000950 DATCGC010000000
VERSION     DATCGC010000950.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1929)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1929)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1929
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_279748"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1929
                     /locus_tag="VIJ87_09245"
     CDS             <1..>1929
                     /locus_tag="VIJ87_09245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444635.1"
                     /translation="PTVGLGGLLASLDPTLRPITIGSGTARSSNYDSAFAFLLGRYAQ
                     ISTNFNYDTSGTAFAPGTGKHRDYKYNETELYVQDNWRIRNNLTLNIGVRYHLYPAPY
                     EKDGFQAGQDVELKNLLDTRIHNAALGISGSDAEPLLRYDLIGKGNGGRSLYETDLNN
                     FAPRFGFAYTPSFKSGFLSKIFGDGLTSIRGGGSVVFDRPGGGITFIQDQVSYLFDNS
                     ATTQFPASSPTSALLNNPRFTGNTLPVQNVAPVITRPSTPFTSNPDCPLSPSGLCSGE
                     FNYAVDQQFRTPYSIQYSFGFQRELPGNFILEASYVGRQSRKLFAQADLAQALNFKDA
                     GSGQLMFDAFNLLQAQVQAGLTGANITKQPWFENQIGAGGTALMAGNGTLRQFVLRGD
                     TSDAVQLLYANGLLDPNVGLSAQFGTNIYISNQGASSYDGMLMSLRKRFSNNLQFDFN
                     YTWSHAIDNGSSVVNTVSGGLVCDITNLRVCRGNSDFDIRHLVNANFIYELPFGRGQM
                     FGKDSPGWLNQIIGGWEVTGIFTARSGLPFGTTTTAFPLGFNFNSPAAYNTTNAAALQ
                     GNIHDASNGTIQFFDNPTAVFDPANPTAGAIRFPHHGEIGNRNTFRGPGFWNIDTAVL
                     KNFKMPWSEQQALQIRWES"
BASE COUNT          455 a          516 c          470 g          488 t
ORIGIN      
        1 ccaacagttg gtcttggtgg cttgctggcg tctcttgacc cgacgcttcg tccaataacc
       61 atcggctcgg gcacggctcg gagtagcaat tacgactctg cctttgcctt cttgctggga
      121 agatacgctc aaatctcgac caactttaat tacgacacaa gcggtactgc attcgctcct
      181 ggaacgggca agcatcgtga ttacaagtac aacgaaaccg aattgtatgt gcaggacaac
      241 tggagaatta gaaacaacct gacacttaac attggagttc gttatcacct gtatcccgct
      301 ccgtatgaaa aggacggttt ccaggcaggt caggacgtcg aactcaagaa cttgttagat
      361 acgcgaattc ataacgcggc tttaggaatc agcggcagcg atgccgagcc tttgcttcgt
      421 tacgatctaa tcggaaaggg aaatggtggc cgttctcttt atgaaaccga cttgaataac
      481 tttgctccgc gcttcggctt tgcgtacacc ccgtcattca agtccggttt tcttagcaag
      541 atcttcggcg atggactaac gtctatccgc ggcggcggct cggtggtctt cgaccgaccg
      601 ggcggcggta tcacgtttat tcaagaccag gtctcatacc tgtttgataa ctcggcaaca
      661 acacagtttc cggcttcgag cccgacatct gccttgctga acaacccgcg tttcaccggt
      721 aataccttgc cggttcagaa cgtggctccg gttatcactc gtccgtccac tccattcacc
      781 agcaatccgg attgtccgct ctctccgagc ggcttgtgct ctggtgaatt taactacgca
      841 gtcgatcaac aattcaggac gccctactcg atccagtaca gcttcggttt tcagcgtgaa
      901 ttgcctggca atttcattct cgaagcatcc tatgtaggac gtcagtcacg caaactcttt
      961 gcccaggcgg atctggccca ggcgctgaat tttaaagatg caggttcggg tcagttgatg
     1021 tttgatgcgt tcaacctgct gcaggctcaa gtacaggcag gactaaccgg cgccaacatc
     1081 accaagcaac cctggtttga aaaccagatc ggtgccggtg gtactgcgct gatggccggt
     1141 aatggcacgc tgcgccagtt tgttttgcgc ggcgacacat ctgacgctgt tcaattgctc
     1201 tatgcgaacg gacttcttga tccgaacgta ggtttgagtg cgcaatttgg caccaacatc
     1261 tacatttcga accagggagc ttcgtcgtac gacggtatgt tgatgagttt gcgtaagcgc
     1321 ttctcaaaca atttacagtt tgacttcaac tacacctggt cgcacgcaat cgacaacggg
     1381 tctagtgtcg tcaacaccgt gagcggtggc ttggtttgcg atatcactaa cttgagagtc
     1441 tgccgaggaa attctgactt cgacattcgt cacctcgtaa acgctaactt catttatgag
     1501 ttgccgtttg gtcgtggaca aatgtttggt aaggattcac caggctggct caatcaaata
     1561 atcggtggtt gggaagtaac cggaatcttc actgctcgca gtggacttcc gtttggtact
     1621 accacaactg cattcccgtt gggcttcaac ttcaacagcc cggctgctta caacacaacg
     1681 aatgctgcag cacttcaagg caacattcac gatgcgtcaa atggaacgat tcagttcttt
     1741 gacaatccaa ccgcagtgtt tgatccggca aacccaacgg ccggtgccat ccgattccca
     1801 caccatggcg aaatcggaaa cagaaacaca ttccgcggtc ctggattctg gaatattgac
     1861 accgccgttt tgaagaactt caagatgccg tggtccgaac agcaagcact tcagattcgc
     1921 tgggaatcg
//
LOCUS       DATCGC010000951         1860 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_180774, whole genome shotgun sequence.
ACCESSION   DATCGC010000951 DATCGC010000000
VERSION     DATCGC010000951.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1860)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1860)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1860
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180774"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            195..>1860
                     /locus_tag="VIJ87_09250"
     CDS             195..>1860
                     /locus_tag="VIJ87_09250"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRTAC1 family protein"
                     /protein_id="HEY5444636.1"
                     /translation="MSMRIISIVFLLLTLFLIAACKKDQGPPPAPATEVATASPSPSA
                     SPTPPRPSGAIEFTDVTQQAGIRFKHNSGAFGKKYLPETIGAGCAFIDYDNDGWQDIL
                     LVNSMNWPEQKGAKSFLALYHNNKDGSFTNVTGQVGLGVEMYGIGVAVGDYDNDGNDD
                     IYITCVGPNHLFRNLGGGKFADVTAKAGVGDPGFSTSAVWFDYDNDGKLDLFVGNYVE
                     WSVEKDIYCSLDNKNKSYCTPQTYKGQSATLYHNRGNGTFENTTQKAGMSDPAGKTLG
                     VALLDYDSDGWLDLFVANDTEPNKLYHNNKNGTFTDEGIAAGVAFSSAGTARAGMGVD
                     AADYDGSGKPSVIIGNFTNESMALYHNDGSGLFTDEAATSGIGKSSAQSLTFATFFFD
                     YDLDGLLDIFAANGHVSDDIAVVQPNVKYAQPPHVFHNKGKKKFEEMTSKLGKALQRA
                     IVGRGAAYGDFDNDGDLDLLITTNNGPVRLLRNENANQNDLLRVKLVGSKANRDGIGA
                     TVTVKTSKGAKEELMVRTGSSYASQSELPVVFGFGKPEEGLTLTVDV"
BASE COUNT          470 a          485 c          502 g          403 t
ORIGIN      
        1 tgggaagggt ggcttgcccc cgctccagcg aatcgcattt gcctcggagc gatgtaacta
       61 ttttcagttg taatgcgctt cgctggtgcg ggggccagcc acccgtcccc acttgttcta
      121 aataccgggt tctaaatagc agggcgtctc gatctacatg gacgccaagt cttcaaataa
      181 tctgaataaa tcaaatgtca atgcgaatca tttcaattgt ctttttactt ctcactctat
      241 tcctaattgc cgcttgcaag aaagaccaag gcccgccacc agcaccagcc actgaggttg
      301 ccaccgcgtc accttcgccg tcagccagtc caacaccacc tcgaccaagt ggggcgatcg
      361 agttcactga cgtcacacaa caggccggca ttcgtttcaa acacaacagc ggcgcattcg
      421 gaaagaagta tctaccggaa acgattggcg caggttgcgc tttcatcgat tacgacaacg
      481 acggctggca agacattctg cttgtcaact ccatgaactg gcccgagcag aaaggcgcca
      541 agtcgtttct cgccctgtat cacaacaaca aggatggttc attcacaaac gtcactggcc
      601 aggtcggact gggtgttgag atgtacggaa tcggagtggc tgtcggcgac tatgacaacg
      661 acggaaacga cgacatctac atcacctgtg ttggtcccaa tcacctgttt cggaatcttg
      721 gaggcgggaa gtttgcggac gtcaccgcga aagctggtgt tggtgatcca ggcttttcaa
      781 ccagcgccgt gtggtttgat tacgacaacg acggcaagct cgatctgttt gtcggcaact
      841 acgtcgagtg gagtgtggaa aaggatatct attgttcact cgacaacaag aacaagtcgt
      901 actgcacgcc gcaaacttat aaaggccaga gcgcaaccct ctaccacaat cgcggcaatg
      961 gcacgtttga gaacacaact cagaaagccg ggatgagcga cccggccggg aaaacgttgg
     1021 gcgttgcttt actggattat gactccgacg gatggctgga tctcttcgtc gcaaacgaca
     1081 ctgaaccgaa caagctttac cacaacaaca agaacggcac tttcacggac gaaggcatcg
     1141 ccgcaggtgt cgcgtttagt tcggccggaa cggcgcgcgc aggaatggga gtcgatgctg
     1201 ccgactacga cggttcgggc aagccaagcg tgatcatcgg taacttcacg aatgaaagca
     1261 tggcgcttta tcacaatgat ggttcgggac tcttcacgga cgaagctgcg acctcgggca
     1321 ttggaaagtc gtcagcacag tcgctgactt ttgccacgtt cttcttcgat tacgatctcg
     1381 acggcctact cgacatcttt gctgcgaacg gacacgtctc ggacgacatt gccgtagtac
     1441 aaccaaacgt gaagtatgcg cagccacccc atgtgttcca caacaagggg aagaagaagt
     1501 ttgaggaaat gacttcgaaa ctgggcaaag ctttgcagcg agcaatcgtt ggacgaggcg
     1561 ctgcctatgg cgattttgat aacgatggtg atctcgatct tttgatcacg accaacaacg
     1621 gcccggtacg cttgctgcga aacgaaaacg cgaaccaaaa tgatctgctt cgcgtgaagc
     1681 tggtaggctc gaaagcaaac cgggatggca tcggcgcaac agttacggtg aagacttcaa
     1741 aaggcgcgaa ggaggagttg atggttcgca ccggatcgag ttacgcctcg cagagtgaac
     1801 tgccggtcgt gtttggtttc ggaaaacctg aggaaggttt gacgttgacg gttgatgtcg
//
LOCUS       DATCGC010000952         1086 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_247043, whole genome shotgun sequence.
ACCESSION   DATCGC010000952 DATCGC010000000
VERSION     DATCGC010000952.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1086)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1086)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1086
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247043"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(30..413)
                     /locus_tag="VIJ87_09255"
     CDS             complement(30..413)
                     /locus_tag="VIJ87_09255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444637.1"
                     /translation="MVTRAIVTSSKTVDFSFRGPLGFEARTVLLSVESGSPNIMAFES
                     TGGNLDVMGLAEFTAIRPNCTEVSLALHYEIKSKLFAWLDRRFHFVDAFVTSELRSIR
                     AHFEGIAAPVVERPPLLPVYRPATA"
     gene            complement(636..>1086)
                     /gene="bioD"
                     /locus_tag="VIJ87_09260"
     CDS             complement(636..>1086)
                     /gene="bioD"
                     /locus_tag="VIJ87_09260"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: protein motif:HMM:NF024891.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004141 - dethiobiotin synthase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent dethiobiotin synthetase BioD"
                     /protein_id="HEY5444638.1"
                     /translation="ATPLSASLIEKVAIDEQRLVDALHRLEERCDFVVVDGPSGWLVP
                     IRRDFFACDLAAKFRLPVLVVTQNRLGCVNHTCLTVRSIIESGLACAGVVLNETPGLA
                     DIATNTNADILRQILAVPILPMLSEELVELTPEWRTAIGFFGDSPLV"
BASE COUNT          284 a          265 c          286 g          251 t
ORIGIN      
        1 ccgtgctctc tgttacagca aacttcaact tacgccgttg ccggtcgata gactggcagt
       61 aggggcggcc gttcaacgac gggcgcggcg atcccttcaa agtgcgcgcg gatgcttctc
      121 agttcagagg tgacaaatgc atccacaaaa tgaaaacgtc gatccaacca cgcgaacaac
      181 ttactcttga tctcgtagtg taatgcgagg ctgacttcgg tgcagttggg gcggatggcg
      241 gtgaattcgg ccaatcccat cacatccaga tttcctccgg tggattcaaa cgccatgata
      301 ttaggcgaac cgctttcaac ggataacagg accgtccgag cttcgaagcc gagcggaccg
      361 cgaaaactga agtcgaccgt cttcgatgat gtgacgatgg cgcgagtcac cattacgaac
      421 tgccgccgat atgattgaat actcgcgaga cgatttttgc attcgtccag cgactgattc
      481 atatggagag ttttttgtag caacataata acgtagggtt gttggggtag aattttagca
      541 ctggggatgc caccagattt tacctaggta aacccttgga aaagggggtc tgaggtgtaa
      601 ctattcgtta cacttgtgtc gaaatgacga caattttaca ccaatggcga atccccaaaa
      661 aaaccgattg cagtacgcca ttctggggtc aattcgacta gctcttcaga cagcattggc
      721 aggattggaa cagcgagtat ctggcgcaag atatcggcgt ttgtgttcgt ggcgatatcc
      781 gctaggccag gtgtttcgtt taagacaact ccggcacagg ctaaaccaga ttcgatgatg
      841 cttcggacgg ttaggcaagt gtgattaacg caaccgagac gattctgggt cacaactaac
      901 actggcagtc taaatttggc ggcgagatca cacgcaaaga aatcgcgacg aatgggaaca
      961 agccatccac tcggtccgtc aacgaccacg aaatcacaac gttcttctag tctatggagc
     1021 gcatcaacca agcgttgctc atcgatggcg accttttcaa tcagggacgc cgaaagaggt
     1081 gttgcg
//
LOCUS       DATCGC010000953         1363 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_446951, whole genome shotgun sequence.
ACCESSION   DATCGC010000953 DATCGC010000000
VERSION     DATCGC010000953.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1363)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1363)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1363
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_446951"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..764)
                     /locus_tag="VIJ87_09265"
     CDS             complement(<1..764)
                     /locus_tag="VIJ87_09265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444639.1"
                     /translation="MRFNRNSQLDRNTLLLLAIIVATAACAVEGQPINAQQNQSRTPF
                     ERNRYQIDFKIDFDHLSYTGSERVRWINRGEKPTSVIYFHLYPNLRITDPEMGVGTTS
                     EGDEPVLDVTEVRTLEGDASLYFFLDDQATTLRINLREPVAPQGATEIVIKFRGTVPE
                     IDPDETSLTTHVVKQVSAALRSERELRRARDLNFRCKGVMLLATAYPVLTVHEGDEWR
                     RKVEPSVGDIVFNEVADYEVSVTIASGVEVFTSGTET"
     gene            complement(774..>1363)
                     /locus_tag="VIJ87_09270"
     CDS             complement(774..>1363)
                     /locus_tag="VIJ87_09270"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEY5444640.1"
                     /translation="NDAIKSVLVSRDRLLRQRAAAALKTNGVGDFTAQIGSVQTRNTA
                     TDYQRALARIGKPVRAVVTTTRGSFTIELLPEEAPLTVDNFVQLARRGYYGGIVFHRV
                     VPNFVIQDGDPRGDGNGGPGYSIRCEVNETPYDRGTVGMALSGKDTGGSQWFVTHAPQ
                     PHLDGGYTVFGRVISGMDVVDAIVRGDVIRSIVIR"
BASE COUNT          317 a          365 c          343 g          338 t
ORIGIN      
        1 gtctccgtgc cggaagtgaa tacctcaact ccggaagcta ttgtcaccga aacttcgtag
       61 tctgcgactt cattaaaaac aatgtcaccc accgacggct cgacttttcg acgccactcg
      121 tcaccctcgt gtactgtcaa gacggggtaa gcagtggcca gcagcatcac acctttacag
      181 cgaaaattaa gatcgcgtgc acgtcttagt tctcgctcgc ttcgaagggc agcgctgact
      241 tgctttacaa cgtgagtggt aagactggtt tcatcgggat ctatctctgg tactgttcct
      301 cgaaatttga tgacaatttc agttgcgccc tgaggtgcta ccggctcccg caaattgatt
      361 ctgagcgttg tcgcttgatc gtcgaggaaa aagtacaaag acgcgtcacc ttctaaggta
      421 cgtacctcgg ttacatcgag cacgggctca tcaccttccg aagtcgtgcc tacgcccatc
      481 tccggatctg tgatgcgcaa gttagggtag aggtgaaagt agataacaga ggttggcttc
      541 tcaccgcgat tgatccatcg cacacgttca ctccctgtat acgacagatg atcgaaatca
      601 atcttgaaat cgatttggta tcgatttcgt tcaaacggtg ttcgagactg attttgttga
      661 gcgttgattg gttggccttc caccgcacag gccgctgtgg ccacgatgat tgccaatagc
      721 aagagcgtgt tccgatcgag ctgactgttt cgattaaatc tcatcaaaca atttcacctg
      781 atcacaatgg agcgaatcac atcacctcga acgattgcat cgactacatc catccctgaa
      841 attacgcggc caaaaacggt gtagccaccg tcgagatgtg gttgcggagc atgagttaca
      901 aaccactgtg agcctccagt gtctttgccg gaaagcgcca ttcccactgt gccgcgatcg
      961 tatggagtct cattcacttc gcagcggatc gaataacccg ggcctccatt gccgtcaccg
     1021 cgaggatcgc cgtcctggat cacgaagttt ggaaccacgc gatgaaaaac gattccgccg
     1081 tagtaacctc gacgggccag ttggacaaaa ttgtcgaccg tgagcggagc ttcttcgggg
     1141 agcagctcaa tcgtaaacga acctctggta gttgtcacaa ctgcacgaac gggtttgccg
     1201 attcgtgcga gcgcgcgctg gtagtcggtc gccgtgtttc tggtctgaac tgatccaatt
     1261 tgagcagtga aatcacccac tccgtttgtc ttcaaagcag ctgcggctcg ttgtcgtagc
     1321 aggcgatccc tggagacgag cacgcttttg atcgcgtcat ttg
//
LOCUS       DATCGC010000954         1555 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_147031, whole genome shotgun sequence.
ACCESSION   DATCGC010000954 DATCGC010000000
VERSION     DATCGC010000954.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1555)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1555)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1555
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147031"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(337..612)
                     /locus_tag="VIJ87_09275"
     CDS             complement(337..612)
                     /locus_tag="VIJ87_09275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444641.1"
                     /translation="MVPAFGIEIAGAIHPIGDQTTPTLPERLTEDIVKGKLTMIEGDH
                     VVITLTDGHDIKLHVDMHTKLGEVIIGDKVIAYVNDSGHATTRLRDE"
     gene            1272..>1555
                     /locus_tag="VIJ87_09280"
     CDS             1272..>1555
                     /locus_tag="VIJ87_09280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444642.1"
                     /translation="MLNIPCACAFMALGLLPGTQAIAGPNDFADNQLPDGMKTHLTFA
                     LQYEELAQSNKSKADNWEFMADYFEKFPKEYRDPSTPVKEHVAQLRAVAA"
BASE COUNT          385 a          388 c          376 g          406 t
ORIGIN      
        1 gcctggacga gatttagaaa gaccccttgc ccctgtagca tgattaagcc aattgcgcct
       61 atgccgagtg cgctcattag catgatgtat cgtagaatag gcatccggca ttcctcctta
      121 tcgtagaggt taagaggtta ataagatggc catctcgcat gagatattga atcagcagca
      181 aatcgcctgc caccgttcat acgacaagtc gaatcaagaa tttcaccaag ccgtcatgac
      241 gttagagggt ttgtagaacc gatagagaaa ataatcatgc cctgtagggc gaacatcttg
      301 ttccatgacg gacattctat cctcacagtt gaacgatcat tcatcgcgca gacgagttgt
      361 ggcatgccca ctgtcgttca cataagctat aactttatct ccgattatga cctcgcccag
      421 cttcgtatgc atatcgacgt gtagcttgat atcgtggcca tcagtaagtg tgatcaccac
      481 atgatcgcct tcgatcatcg tgagtttgcc cttcacaatg tcttcggtta aacgttcggg
      541 caatgtcggt gttgtctggt cccctatcgg atgaatggct ccggcaatct cgattccaaa
      601 agcgggcacc ataatcagta gtgagaatat gaacgatgag aacctgttca taagacgatg
      661 ctcaacgcag ccctcttgga tgacttcaat agcctcaggc tgactgagag acctcttgca
      721 tcgttaccag ttttgagcat tcttcggcgc acgtttggca agccttcgcg cattgctgac
      781 aatgctcagc cttgtgcttg gcacattcat cgctgcatgc ctggcaaatc tcagcgcaca
      841 gttcgcacag ttgcgcctca taccgtgagt cgcgtgacat gaattgagcg gccacgcggc
      901 acatatcggc gcagtctctg gtaagttcga tacaccggac catcatgttg agcttttgtt
      961 cgtgcagaca ggactctgcg catgcttcgc ataaggtggc acattcataa caggcctcga
     1021 tacatcgttg ctgctgtgtt gattgttcca tgtgttcctt ccttcattgt ggtggactcc
     1081 tcttctcatg acactctagg ggcatgcaga gattcttagt actggtgatc ttcctagtag
     1141 cgaactagcg atgcggggca cctaggcctt ttcctagttg agacatcgga ggatccgagg
     1201 acaataagct ctgaccaaat atcctggtta atggggtgaa aacatgcaga tcgcaagagg
     1261 agaggtatct agtgcttaac attccgtgtg cttgcgcatt catggccttg ggtctccttc
     1321 ctggcacgca ggctattgct ggtccaaatg attttgctga taaccaatta ccagacggaa
     1381 tgaaaacgca cctcacgttt gccctgcaat atgaggaact ggctcagagt aacaaatcaa
     1441 aagcggataa ttgggagttc atggcagact attttgaaaa gtttccgaaa gagtatcgcg
     1501 acccatcaac acccgtaaaa gagcacgttg cccagctccg tgcagtcgcg gcaga
//
LOCUS       DATCGC010000955         1068 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_113052, whole genome shotgun sequence.
ACCESSION   DATCGC010000955 DATCGC010000000
VERSION     DATCGC010000955.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1068)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1068)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1068
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113052"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1068)
                     /gene="glnS"
                     /locus_tag="VIJ87_09285"
     CDS             complement(<1..>1068)
                     /gene="glnS"
                     /locus_tag="VIJ87_09285"
                     /EC_number="6.1.1.18"
                     /inference="COORDINATES: protein motif:HMM:TIGR00440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004819 - glutamine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006425 - glutaminyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glutamine--tRNA ligase"
                     /protein_id="HEY5444643.1"
                     /translation="SNFIRDIIIDDVKSGKHGGSVQTRFPPEPNGYLHIGHAKAICLD
                     FGLAAEFGGKCNLRFDDTNPSKEETEYVEAIMEDVQWLGFQWDGLFYASDYFQQLYDW
                     AIQLIKDGKAFVCDLTADEIREYRGTLTEPGKNSPYRDRSVEENLDLFEKMKKGEFPD
                     GTRTLRAKIDMRSPNLSLRDPVMYRILHLEHHRTGGEWCIYPMYDYAHGQSDSIERVT
                     HSMCTLEFDNNRHLYNWFIENLGIFPSRQYEFDRLSLTHTLLSKRKLLRLVEDGHVEG
                     WDDPRMPTLSGMRRRGFTSTAIRNFVGSVGVSKTNGITQLQQLEYFLRQDLNQIVPRV
                     MCVQKPLRVVIENYPDDVVEE"
BASE COUNT          255 a          278 c          264 g          271 t
ORIGIN      
        1 atttcttcca ccacgtcatc gggatagttt tcgatcacta cgcgtaatgg tttctgcaca
       61 cacatcaccc gcggaacaat ctgatttaag tcctggcgca ggaaatattc gagttgctgt
      121 aactgagtaa tgccgtttgt cttcgagacc ccaacacttc cgacgaagtt tcgaatggct
      181 gtcgatgtaa acccgcgccg gcgcattccc gagagcgtag gcatgcgcgg atcatcccag
      241 ccttccacat gtccgtcttc aaccaacctc aacagcttgc gtttgctaag cagagtgtgg
      301 gtgagtgaaa gccggtcgaa ctcatattgc cgcgaaggga agatgccaag gttttcgatg
      361 aaccagttat acagatgacg attattgtcg aactccagag tgcacatcga gtgggtcacc
      421 cgctcaatcg aatccgactg accatgcgcg taatcgtaca tcgggtaaat acaccactca
      481 ccacccgtac gatgatgctc caggtggagg attcgataca tgactggatc gcgcagacta
      541 aggtttggag agcgcatgtc gatctttgca cgcagcgttc gcgtaccatc cgggaactcc
      601 ccctttttca ttttctcgaa aagatcgaga ttctcttcga cagaacgatc gcggtaaggg
      661 ctgttcttgc cgggctcggt caacgtgcca cgatactcgc gaatttcgtc tgcggtgaga
      721 tcacagacga aggcttttcc gtccttaatt aattgaatgg cccaatcgta cagttgttgg
      781 aagtagtcag acgcatagaa gagaccgtcc cactggaagc ctagccactg cacgtcttcc
      841 atgatggctt caacgtactc ggtttcttct ttagatggat tggtgtcgtc aaaacgcaag
      901 ttgcacttac cgccaaactc ggcggccaat ccgaagtcga ggcagatagc tttggcatgg
      961 ccgatgtgca ggtagccgtt tggctctgga ggaaatcggg tttgtacgct acctccatgt
     1021 tttccactct tgacgtcatc gataatgatg tctctaataa aatttgac
//
LOCUS       DATCGC010000956         1071 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_247131, whole genome shotgun sequence.
ACCESSION   DATCGC010000956 DATCGC010000000
VERSION     DATCGC010000956.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1071)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1071)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1071
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247131"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1071
                     /locus_tag="VIJ87_09290"
     CDS             <1..>1071
                     /locus_tag="VIJ87_09290"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEY5444644.1"
                     /translation="MEIAAFHVFGVHDWSARLGPALCGVLTVVAIWLLTRQAEFGAKD
                     DQISRGHVTALIVASCLGMLVFSRGASFDIVITMTTTWALSCFLLSELGEDLRRQTLM
                     RVGFYFFVGLSLLAKGLVGIVIPAGVIGFYYLLRREWPRCALWVSLLWGAPLAILVSA
                     VWYGPVIYKHGWVFVNEFFVQHHFARYLSNKYHHPQPFYFYPAILLMLTLPWTSFLID
                     AFIRAKNWNWRGPQNSSRLLVFSLGWILFPILFFSFSGSKLPGYILPVLPAALILISS
                     SVHRLQEKQDARWPMIVTGLLLVFVGVGGLFYGIRVAHLSVLCTGLAAAPFIIAGAFS
                     IVSRRIDWAVSAIACSVLLGIV"
BASE COUNT          186 a          244 c          294 g          347 t
ORIGIN      
        1 ggatggagat tgcggcattt cacgtttttg gcgttcacga ctggtctgca cgtcttggcc
       61 cagcgttatg tggcgtattg actgtggtcg caatctggtt gttgacacgt caagcagagt
      121 ttggagcgaa ggacgatcag atctctcggg gacacgttac ggcgctcatt gttgcttcct
      181 gtttgggaat gcttgtgttc tctcgaggag ctagtttcga cattgtcatt acgatgacga
      241 ccacgtgggc gctcagttgt tttcttctgt ctgaacttgg cgaagatcta agaagacaga
      301 ctttgatgcg cgttggtttc tatttctttg ttggactttc gctgctcgcc aaaggcctgg
      361 ttggtattgt gattccagcg ggcgtcattg ggttttatta cctgctccga cgcgagtggc
      421 cgagatgtgc cctttgggtg agtctgctgt ggggtgcccc actagctatt ctcgtttccg
      481 ctgtgtggta tggaccggtg atttacaaac acggctgggt ttttgttaac gagtttttcg
      541 tgcaacacca ctttgcgcgc tatctgtcca acaagtatca ccatccacag ccattctatt
      601 tttacccggc aatcttgttg atgctaacgc tgccatggac gtcgtttctt atcgacgcgt
      661 ttattcgagc aaagaattgg aactggcgag gacctcagaa ctccagtcgt cttttggtgt
      721 tttcattggg gtggatattg tttccgatac ttttcttttc cttctcaggt tcgaagctac
      781 ctgggtacat cctgccggtt cttccggcag cattgatctt gattagctcc agcgtgcatc
      841 ggttacagga gaagcaagac gctcgatggc cgatgatcgt aacaggactg ctcttggtct
      901 ttgttggtgt cggtggattg ttctacggaa tacgagtggc acatctttcc gttctttgta
      961 ctggcctggc agcggcgccc tttattattg ccggcgcatt ctccattgtc tctcgacgaa
     1021 ttgattgggc agtttcggca atagcttgtt cggtgctgtt gggaattgtc g
//
LOCUS       DATCGC010000957         5109 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_180879, whole genome shotgun sequence.
ACCESSION   DATCGC010000957 DATCGC010000000
VERSION     DATCGC010000957.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5109
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180879"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..831)
                     /locus_tag="VIJ87_09295"
     CDS             complement(<1..831)
                     /locus_tag="VIJ87_09295"
                     /inference="COORDINATES: protein motif:HMM:NF015651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase transmembrane
                     domain-containing protein"
                     /protein_id="HEY5444645.1"
                     /translation="MNDDSPATGNQTRRRRFAPVGIIFGLLGLLLFAYFVRRAGLAEI
                     GAGIRRLGFGFLLIIAISSVRHIVRSVAWTMCVEKPYRLRFRDAFAARLMGDALGNII
                     PLASAAVSEPSKAVFVKDRLPLMVGLSALAIENIFYSLSVTLFIFSGTATLLLSFALP
                     KPLRYASIGALIVILIIVPLGYFVIHRQAKFISGAFGFLAKRGIAASAMLRMKPRAEV
                     FEERIYGFYQRNQSSLIPIFALELLFHIAGVVEIYTTLYFISPDVPPSLRGAFILESV
                     N"
     gene            1082..2266
                     /locus_tag="VIJ87_09300"
     CDS             1082..2266
                     /locus_tag="VIJ87_09300"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HEY5444646.1"
                     /translation="MSQSQTAIEQLSGRPLTILSEDEQMFRASVREFAEGELRSRVEQ
                     MDEHQKLDPALIKQCFDLGLMGIETPEEYGGAGGTFFQAILAVEELSRVDASVGVFVD
                     VQNTLVNNAFFRWGTPEQKEKYLTKLASEKVGAYALSEPSSGSDAFAMQTRAVDKGDH
                     YVINGRKLWITNGIEAEIFVLFANANPEAGYRGITAFIVEKSFPGFSVGKKENKLGIR
                     ASSTVELILEDCKVPKENVLGEAGKGYKISIETLNEGRIGIGAQMIGIASGALECALR
                     YTTERQQFGKAINQFQGVQFQLAEMATDLEAARLLVYNSARLKDAGINFVKEAAMAKL
                     YSSRVAERVTSKAIELYGGYGYVKDYPVEKYWRDSKIGAIYEGTSNMQLQTIAKLIIG
                     GK"
     gene            2300..2617
                     /locus_tag="VIJ87_09305"
     CDS             2300..2617
                     /locus_tag="VIJ87_09305"
                     /inference="COORDINATES: protein motif:HMM:NF024579.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5444647.1"
                     /translation="MGTSRIELFKQMLGSDPGNTTVMFGLAKEYEKAGQHEELVEMLN
                     RYLETTDDEGNAFGMLANAYERLGQTEKAKEAYEKGIETAQRHGHPGMAEEYRMTLAS
                     NYE"
     gene            2610..4895
                     /locus_tag="VIJ87_09310"
     CDS             2610..4895
                     /locus_tag="VIJ87_09310"
                     /inference="COORDINATES: protein motif:HMM:NF012880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehydrogenase E1 component subunit alpha/beta"
                     /protein_id="HEY5444648.1"
                     /translation="MNDTKVLKLVRKSESDSVETEMEQPREAQPAPAPRPKPVEAPKP
                     TAVPGAKPMHALRAAVVKSRGQSLPDRKTLVEMYRTMYTSRRIDDKEIQLKGQNRIYF
                     QISGAGHEAVLVAAGMALRPGYDWFYPYYRDRALCLQLGMTPLEQLLAAVGSEDDPAS
                     HGRQMPSHWGHTELNIVSQSSPTGTQLLQAVGCAEANYRVNLIDELKQRTKNFHSDEV
                     TYVSLGDGTSSEGEFWEALNTACNLKLPVVFLLEDNGYAISVPVEVQTAGGDASSLVS
                     GFPSLYIQKCDGTDLIESLEVMSQAVQYCRERKGPALVHAKVIRPYSHSLSDDEKLYR
                     SDEERSGDAERDPVKRFGARLIEEGVISQQDLQKIKDEIDHEIAEAADQALASPQPSV
                     ESVTKFVFSPTVDPTSKKFDTEDGVELSGNAGTMVDLINRCLHTEMARDPSIVVFGED
                     VADCSREQYLDNVKGKGGVFKVTENLQRKFGSARVFNSPLAEANIVGRAIGMATRGLK
                     PVVEIQFFDYIWPAMHQIRNELALLRWRSGNEWKAPMVIRVPIGGYLKGGAVYHSQSG
                     VSTFTQIPGLRVIYPSNALDANGLLRTAIRSDDPVLFLEHKHLYRQAYNKSQYPGDQF
                     MIPFGKAKRVREGTDISIITYGALVQRSLVAAKQAEREGVSVEVIDLRSLVPYDWNSI
                     VETVKKTNRVIVAHEDSLSFGYGAEIAARISSELFEHLDAPVKRVCALDTFVAYAPHL
                     EDVILPQVTDVAKAIAEVKSY"
BASE COUNT         1348 a         1232 c         1392 g         1137 t
ORIGIN      
        1 gtttaccgac tcaaggatga acgccccacg cagcgacggt ggcacatccg gactaatgaa
       61 gtagagcgtg gtgtagatct caaccactcc ggctatgtga aaaagtaatt cgagcgcaaa
      121 aattggaatg agactgcttt ggttgcgttg atagaaacca taaatgcgct cttcgaatac
      181 ttccgcacgc ggcttcattc gcagcattgc agaggcagcg attccgcgtt tagccagaaa
      241 cccaaacgcg ccacttatga acttcgcttg tcgatgtatg acgaaatacc caagcggaac
      301 aataatcagg attactatga gcgcgccaat gctggcgtaa cgcaaaggct tgggcaaagc
      361 aaaactcaac agcagggttg cagtaccaga gaaaataaaa agcgtgactg acaaactgta
      421 aaagatgttt tcaatcgcca gggcagataa gccaaccatc aaaggcagtc gatcctttac
      481 gaagacggct tttgatggtt cgctaaccgc ggcgctggca agtggaataa tgttgcccaa
      541 cgcatctccc atgagtcgcg cggcaaacgc atcgcggaat cgcaatcgat acggcttttc
      601 cacacacatt gtccaggcaa cagatcgtac aatgtgtcga acactcgaga tggcgattat
      661 caggagaaat ccaaatccga gtcgacggat tcccgcaccg atttcagcga ggccggccct
      721 gcgcacgaag taggcaaaga gcagaagtcc caaaaggcca aaaatgattc caactggagc
      781 aaatctgcga cgcctcgtct ggttgccagt tgccgggctg tcgtcgttca ttggcttacc
      841 gtaacacata ggcgagttgc ctcagcaagc atcagaccgc tgggattggg ctttggtttt
      901 tggactttag tcttgggccg ttttagtcgt tcatttcaac gtttaccgaa ctctgaatca
      961 caaaactccg aagaccaaag gccaaagccc caagtctgtc ttttccgctt ttgccttttc
     1021 ctttttgtct tgattatgat gcaacgttca acttcctatc acagacaaag caaggtatct
     1081 gatgagtcaa tcccaaacag ctattgagca attatcaggt cgaccgctga ccatactttc
     1141 tgaagacgaa cagatgtttc gtgcgagtgt tcgagagttt gccgaaggcg aattgcgctc
     1201 gcgcgtcgaa cagatggacg aacaccaaaa gcttgacccg gctcttatca aacagtgttt
     1261 cgatctcggc ctaatgggaa tcgaaacacc ggaagagtac ggtggcgccg gaggtacatt
     1321 cttccaggcg attcttgctg tcgaagaact gtccagagtt gacgcttctg tcggagtctt
     1381 tgttgatgtt caaaacacat tggtcaacaa cgctttcttt cggtggggca ctcccgaaca
     1441 gaaagagaag tatttgacaa agctcgctag cgaaaaggtt ggagcttacg ctttgagtga
     1501 gccgagttcg ggctcggatg cttttgcgat gcagacccgt gcggttgata agggcgatca
     1561 ttatgtcatc aacggtcgca agctctggat cacaaacggc atcgaagcgg agatcttcgt
     1621 gctctttgct aatgcaaatc cggaagcggg atatcgcggc atcacggcgt tcattgtcga
     1681 gaagagtttt ccgggatttt ccgtgggcaa gaaagaaaac aaactaggca ttcgcgcctc
     1741 atccacagtt gaactaattt tggaagactg caaggtgcca aaagagaacg ttctcggtga
     1801 ggcaggcaag ggttacaaga tttcgatcga aactctgaat gaaggtcgta tcggaatcgg
     1861 tgcacaaatg atcggcattg cgagtggcgc gctcgagtgt gcacttcgtt acaccaccga
     1921 gcgacaacag tttggtaagg ctatcaacca gttccagggg gtgcagtttc agttggcgga
     1981 aatggcaacc gacctggaag cggcgcgact gctcgtgtac aactcagcgc gcctgaaaga
     2041 tgcgggaatc aactttgtca aagaagcagc gatggcgaag ttgtactcgt cgcgtgtggc
     2101 tgagcgagtg acatccaaag cgatcgagtt gtacggcgga tacggctatg taaaagacta
     2161 tccggtcgag aagtactggc gtgactcaaa gattggagcg atctacgagg gaacgtcgaa
     2221 catgcaattg caaacgattg ccaaattgat tatcggtgga aaatgatcgt cagaaactaa
     2281 ggttcgaaac ttaaaagtta tgggaacttc gcgaattgaa ttattcaaac aaatgttggg
     2341 gagcgatccg gggaatacca cggtgatgtt tggactggcc aaggaatacg agaaagccgg
     2401 acaacatgaa gaactggttg aaatgttgaa tcggtacctc gaaacaacag acgacgaagg
     2461 taacgccttc ggaatgttgg caaacgcgta tgaacggctc ggacaaaccg aaaaggcgaa
     2521 ggaagcttat gaaaagggta ttgagaccgc ccaacgccac ggacatccgg gtatggccga
     2581 agaatatcga atgactctgg cgagcaatta tgaatgacac aaaagtacta aagctcgtgc
     2641 gcaagtcgga atccgattca gtcgagactg agatggaaca accacgcgaa gcacagccag
     2701 caccagcgcc gcgaccaaaa ccagttgagg cgcctaagcc gacagcggtg ccgggcgcaa
     2761 aaccgatgca cgcgttaagg gctgccgtag ttaagtcgag gggccaatct cttccggatc
     2821 gcaagacact cgtcgagatg tatcgaacga tgtatacgtc gcgacgaatc gacgataaag
     2881 agatccaatt gaagggtcag aatcggattt actttcaaat tagtggagcc ggccacgaag
     2941 ccgttctggt cgctgccggg atggctttgc gacctggcta cgattggttt tatccgtact
     3001 atcgcgatcg cgcgctttgt ttgcagttgg gaatgacgcc actcgaacaa ctgctagccg
     3061 ccgtcggctc cgaagacgat cccgcctcgc atggtcgcca gatgccttcg cactggggcc
     3121 atacggaact aaatattgtt tcccagtcgt caccgacagg aacgcaactg cttcaagccg
     3181 tcgggtgcgc ggaagcaaat tatcgggtca acctgatcga tgaacttaag caacgcacta
     3241 agaattttca ctctgacgaa gtgacctacg tatcgcttgg cgacggaacc agcagcgaag
     3301 gtgagttctg ggaagcactc aacactgcct gcaacctcaa acttccagtc gtctttttgc
     3361 tcgaagacaa cggctacgcc atcagtgttc ctgtagaagt acagactgcc ggtggtgatg
     3421 cctcaagtct cgtttccggt tttccgtctc tctacattca gaagtgtgat ggaacggatc
     3481 taatcgagtc gctggaagta atgagtcagg cagttcagta ctgccgtgag cgaaaaggtc
     3541 cggcgttggt gcacgcgaaa gtaattcgtc cctattctca ctcgctttca gatgacgaaa
     3601 agttatatcg gtcggatgag gagcgctcag gagatgcaga acgtgatccg gtgaaacggt
     3661 ttggtgcgcg tttgattgaa gaaggcgtca tcagccaaca agatctgcaa aaaatcaagg
     3721 atgagatcga ccacgagatt gccgaggctg cggatcaagc gctggcgagt cctcaaccat
     3781 cggttgaaag cgtaacgaag tttgtttttt cccctaccgt agatcccacg tcgaagaagt
     3841 ttgacacgga agacggggtg gagttgtcgg gcaacgccgg gacaatggtt gacttgatca
     3901 atcgctgttt gcacacggaa atggcccgcg acccgagcat cgtagttttt ggggaagatg
     3961 ttgctgactg ttcccgagag caatacctcg acaacgttaa aggtaaaggc ggcgtgttta
     4021 aggtcacgga gaatttgcag cggaaatttg gtagtgcgcg cgtgttcaat tcaccactgg
     4081 ctgaagcaaa cattgtcgga cgcgccattg ggatggcaac gcgtggcttg aagccagtgg
     4141 ttgaaattca gttcttcgac tacatctggc cggcgatgca ccagattaga aatgagctgg
     4201 ctcttcttcg ctggcgttca ggcaatgaat ggaaagcgcc aatggtgatt cgcgttccta
     4261 ttggtggtta cctaaagggc ggcgcggttt atcactcaca atcgggcgtg tcgacattca
     4321 cacagattcc aggactgcga gttatttatc catcgaatgc actcgacgct aacggattac
     4381 ttcgcactgc tatcagatca gacgatccgg tattgttcct ggaacacaaa cacctgtacc
     4441 ggcaggcgta caacaagtcg cagtatccag gcgaccagtt catgattccg tttggcaagg
     4501 cgaagcgagt tcgggaaggc acagacatct cgatcatcac ttacggcgcg ctagtgcaac
     4561 gttcgttggt cgccgcgaag caggctgaac gggaaggtgt cagcgttgaa gtgatcgact
     4621 tgcgaagtct tgtcccgtac gactggaact cgatcgtcga gactgtgaag aagacgaata
     4681 gagtaatcgt cgctcatgaa gactcgctat cgtttggcta tggcgcagag atcgcagccc
     4741 gtatttcaag cgaacttttt gaacatctgg atgctccggt gaagcgcgtc tgtgcgctcg
     4801 acacgttcgt cgcatatgcg ccccacctcg aagatgtaat cctgccgcag gttactgatg
     4861 tggcaaaagc gattgctgag gtgaagagtt actagtaacg gttcccttta gtggcgccga
     4921 caacataacg ggcgcgctct cctgggaccg caggcgtcct cgcctgctaa tgtttccata
     4981 gcggacctta gtggcgactt gggcaggcga ggacgcctcc ggtcccagaa gagcgcgccc
     5041 gttagttcaa tggcgtcact gaagggctgc gtatccaaaa aaatattcct caccaacaaa
     5101 tacaaacgc
//
LOCUS       DATCGC010000958         1156 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_147088, whole genome shotgun sequence.
ACCESSION   DATCGC010000958 DATCGC010000000
VERSION     DATCGC010000958.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1156)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1156)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1156
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147088"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..889
                     /locus_tag="VIJ87_09315"
     CDS             <1..889
                     /locus_tag="VIJ87_09315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444649.1"
                     /translation="FPQYGIINNRLESQGQSFYNAGKVDVTRRFSNGIQAGLSYTFAK
                     LITDAGEDIFGDSPLNGVIQNPFDRGPLRSVSPNIPPHSLVFNYIIELPFGKGRRYLN
                     EGGLVDRLVGGFQITGIHRYRSGPALTPFLAGGQRDFLQLAGYNGNLRPNITGQSFYT
                     DIPAGGVNYRYLNPAAFSRPVDFRNAPPFSLDGVTVNPAYTAYYSDPLRFFGNAAPTY
                     GGLRAQPFFTEDFSVMKKTKVTETTYFEIRAEFFNLFNRGRFGAANVNVDDVNFGISA
                     RNADIFQPRRIQVGGRFVF"
BASE COUNT          266 a          313 c          285 g          292 t
ORIGIN      
        1 gtttccgcag tacggcatta ttaacaaccg cctggagagc caaggacaga gtttctataa
       61 cgcgggtaag gttgatgtta cgcggcgctt ctcgaacggt attcaggctg gactgtctta
      121 cacattcgct aaattaatca ccgatgcagg cgaagacatc ttcggcgact cgccactaaa
      181 tggagtgatc cagaacccgt ttgatcgcgg gccactgcgt tcagtctcgc ctaacattcc
      241 gcctcactca cttgtcttca actacatcat cgagctgccc tttggtaaag gccggcgata
      301 cctgaatgag ggtggcttag ttgatcgtct ggtgggtggg ttccagataa caggcattca
      361 ccgctaccga agcggtcctg cactgacacc gtttctcgca ggaggacagc gcgacttcct
      421 tcaactcgcc ggttacaacg gcaacttacg cccgaacatt actggacagt cgttttatac
      481 ggacatccct gctggtggag tgaactatcg atatctcaat ccagcagcgt tttcacgtcc
      541 ggtagatttc cgcaacgcac ctcccttctc gctcgacggc gtcacggtga atccggcgta
      601 taccgcgtat tattccgatc cgcttcgatt cttcggaaac gctgcaccga cctatggtgg
      661 tttgcgagca cagcctttct tcaccgagga tttcagcgtg atgaagaaga ctaaagttac
      721 cgaaacaact tatttcgaga tacgtgctga attctttaac cttttcaatc gcgggcgctt
      781 cggagcagcc aacgtcaatg ttgacgatgt gaacttcggt atctctgctc gtaatgcgga
      841 catctttcag ccgcgtcgca tacaagtagg cggaaggttc gtcttttagt tagggttggt
      901 cagcacaata acgcggtagc gtttgcctgc gtgtcgagat taagatctgg tggtaatgat
      961 cgtcaccaaa cggactattt gtgaccacga gaggacgcca tctgaaaaca gaaccatacg
     1021 ctaccgcgtt atggtactga ccatatgcct gcttctcgct tgcactcctg cataccctca
     1081 acaagtaaaa caatttgttg acgaaggcct ggccgcgttc gaccgtggtg acactacagc
     1141 cgcgcgcgac tcattt
//
LOCUS       DATCGC010000959         2373 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_247191, whole genome shotgun sequence.
ACCESSION   DATCGC010000959 DATCGC010000000
VERSION     DATCGC010000959.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2373)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2373)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2373
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247191"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(73..636)
                     /locus_tag="VIJ87_09320"
     CDS             complement(73..636)
                     /locus_tag="VIJ87_09320"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY5444650.1"
                     /translation="MRNRIEVETLTKEIKVVSEGARNEFGALTVEQLNWKPGAERWSV
                     AQCFDHLVTTNVGYFPVFESIAKGQKQSTFVERLPVVPSLWAKLLIKSLDPKTTRKLK
                     APAPFQPATSDLPGSIIDDFVEHQSRLAELMEATADMDVDRIVMTSPAAKMITYTVMD
                     AFRIVVVHEKRHFQQAKRVTEEGGFPR"
     gene            complement(654..>2373)
                     /gene="ggt"
                     /locus_tag="VIJ87_09325"
     CDS             complement(654..>2373)
                     /gene="ggt"
                     /locus_tag="VIJ87_09325"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HEY5444651.1"
                     /translation="TPTTMHPKRKHNFRSRLFLTVSITTIMAIGINSPLLQRPAAQVK
                     AGRSVVRAQHGMVATSQPLASQVGLEVLKRGGNAVDAAIAMAAVLNVTEPMMTGVGGD
                     MFAIVYWAKTKELKGLNASGRAPHALSLDYFAKNNIKRMPEFGMTSITVPGAVDGWTT
                     LRDKYGTMKLADLLAPAIGYAENGFPVMEKAAENWNAEVQKLKRTPAAASNYLIDGRA
                     PRPGEIFRQPNLARTLRTIADGGRDAFYKGPIAKAIVDYMKDNGGFITMEDLAATRAD
                     WVEPISTNYRGYQVYELPPNGQGITALIALNILEGFDLGAMRSQPAQYYHTMIEAMKL
                     AFADRNRYIADPTFSKVPVAELLSKDYAAKRRALIDPRKALDNPPSGDINLGSDTTYF
                     TVVDKDGNAVSFINSLFDAFGSGVVAGDTGIVFQNRGSAFSLDPKHPNAIAPGKRPFH
                     TLIPAMVMKDNQLFMSFGVMGGAIQAQGHVQVLVNLIDLKMGLQEAIDAPRYRFTSGR
                     SVLLEDELGSSVIEQLLSMGHVRGKPPGVLRSSMGGGQAIMIDPVSKTLMGASDPRKD
                     GMALGY"
BASE COUNT          494 a          661 c          613 g          605 t
ORIGIN      
        1 gggctactgc cccggcctac tgccccggcc tactgccttg ggctactgcc tcgggctact
       61 cgcttggcat aactatctag gaaagcctcc ttcttccgtc actctctttg cctgttgaaa
      121 atgacgtttc tcatgtacga ccacaatcct gaaggcatcc ataacggtgt atgtgatcat
      181 tttcgctgcc ggtgaagtca ttacgattcg atcaacatcc atgtcggccg tagcttccat
      241 cagttctgca agtcgacttt gatgttcgac gaagtcgtca ataattgaac cgggaagatc
      301 gctcgtcgca ggttgaaatg gtgccggtgc ttttagtttt cgtgtcgtct ttggatcgag
      361 tgacttgatc agcagcttag cccaaaggct tggcaccaca ggcagtcgtt caacgaatgt
      421 cgattgcttc tggcctttcg cgatcgattc gaacacggga aagtaaccaa cgttggtggt
      481 gacaagatgg tcgaaacact gagctacgct ccaacgctct gcgcccggtt tccagttaag
      541 ttgttcgacc gtcaaagcgc cgaactcatt tcgagctccc tcgctgacca ctttaatctc
      601 ttttgtcagc gtttctactt ctatgcgatt tctcatctcg aaaccttagt gcgctagtag
      661 cccaacgcca ttccatcttt ccttggatcc gacgcgccca ttaaggtctt gctaaccgga
      721 tcgatcatga tcgcctgtcc acctcccatc gacgaccgca acacccccgg aggtttcccg
      781 cggacgtgcc ccatcgataa caactgttct atcacgctcg atccgagttc atcctccagc
      841 agcacgctac gtccacttgt aaatctataa cgaggagcat caatcgcttc ctgtagtccc
      901 atcttcaagt cgatcaagtt tacgagtact tgcacgtgac cctgcgcctg gattgcgcca
      961 cccatgacac caaacgacat gaacagctgg ttgtctttca tgaccattgc cggaatgagc
     1021 gtgtgaaagg gacgcttgcc gggggcgatg gcgttcggat gtttgggatc caacgagaag
     1081 gcactgcccc gattttggaa gacgatgcca gtgtcgccgg cgacaactcc agatccaaac
     1141 gcgtcgaaga gactgttgat aaacgagacc gcgtttccgt ctttatcgac gaccgtgaaa
     1201 tacgtcgtat cactgcccag gttaatgtcg cccgacggag gattatccag cgccttcctg
     1261 ggatcaatca gcgcgcgtcg cttggcggcg tagtcttttg aaagcaactc ggcaaccgga
     1321 actttcgaaa acgtcgggtc ggcgatgtac cggttgcgat ctgcgaaagc tagtttcatc
     1381 gcttcaatca ttgtgtggta gtactgcgcc ggctgcgaac gcattgcgcc aagatcgaac
     1441 ccctcgagga tgtttagagc gatgagcgcg gtaattccct gcccgttcgg aggtagttca
     1501 tagacctgat agccacgata gtttgtcgag atcggctcaa cccagtcagc cctcgttgcc
     1561 gcaaggtcct ccatcgtgat gaaaccgccg ttgtctttca tgtagtcaac gatcgctttg
     1621 gcgattggtc ctttgtagaa cgcatcgcgt ccgccatcag caatagtgcg cagtgtacga
     1681 gcaaggtttg gctgacgaaa gatttcacct ggtcgggggg ctcgcccatc gatgagatag
     1741 tttgatgcgg ctgccggtgt gcgcttcaat ttttgaactt cggcgttcca gttttccgca
     1801 gccttctcca tcaccggaaa gccgttctcg gcgtagccaa ttgccggcgc cagtaagtcg
     1861 gccagcttca tcgtgccgta cttgtctcgt agggtagtcc aaccgtcaac agctcctggc
     1921 accgtaatgc tggtcatgcc gaactcgggc atccgcttga tgttgttctt tgcgaagtaa
     1981 tcgagactga gtgcgtgtgg ggcgcgaccg ctggcattta gacccttgag ttctttcgtt
     2041 tttgcccaat agacaatcgc gaacatatct ccgccgacac cagtcatcat gggctcagta
     2101 acatttagca ccgcggccat tgctattgct gcgtcgaccg cgttgccgcc tcgtttcaag
     2161 acctcgaggc cgacttgcga agccaacggt tgactggtcg ccaccatgcc atgttgagcg
     2221 cgtacaactg agcggcccgc tttgacttga gcagccggtc gttgcaacaa gggagagttg
     2281 ataccaatcg ccatgatggt tgttatggaa actgttagga agagtcgact gcgaaagttg
     2341 tgcttgcgtt ttggatgcat ggttgtcgga gtc
//
LOCUS       DATCGC010000960         1359 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_180931, whole genome shotgun sequence.
ACCESSION   DATCGC010000960 DATCGC010000000
VERSION     DATCGC010000960.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1359)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1359
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180931"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(378..1154)
                     /locus_tag="VIJ87_09330"
     CDS             complement(378..1154)
                     /locus_tag="VIJ87_09330"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEY5444652.1"
                     /translation="MNEQLPILIERTPVLAILRLNRPEKLNALSNDIFEALGSELSHL
                     EDDNDLRAVILTGAGERAFCAGTDINELRDADASMLSERGQQLCDRVENFPVPVIAAI
                     NSIAAGGGLELALACHLRLASVDASFSLPETKLGLIPGYGGTQRLARELGVGRALEMM
                     LTGRTLSSEEALAFGLINRIVSPEMLLSETTSLANEIAQLSPLSIRGCLKAVARGLDL
                     PLEEGLKLETEIFASLFETEDVREGTRAFLEKRSPVFKGR"
BASE COUNT          318 a          372 c          334 g          335 t
ORIGIN      
        1 cgggaaggct aacctccgcg cctaaccgcg gaattcttgt ttgctatccg ttataggttg
       61 tgcttgagca atctactaac tgtccattgg attcggcgtg gtgcttcggc gttctgttac
      121 gtaggttggc cgtgaacgat ccaccaaccg cccgttggtc ggagtcggcg tagtcctgca
      181 acctcctatt tcatagttgg acttgagact atccgatcac ggccctggtg ggattgcacc
      241 ttctgtgcaa agcactggct cctcaattat tgagttcctc ttcgcacttg cacgctttcc
      301 atcaacgcta ctgagccatc attcacgatt cctggggcag aagggcatcg tattgacgct
      361 aaatccggaa gagtccctta gcgccccttg aagacaggcg accgtttttc gagaaacgct
      421 cttgtacctt cgcgcacgtc ttccgtttca aacaacgacg caaagatttc ggtctcgagt
      481 ttgagacctt cttcaagtgg aagatcgaga ccgcgtgcga cggctttcag gcatcctcta
      541 atcgagagcg gcgagagttg ggcgatttcg ttcgcaagag aggtggtctc tgacagaagc
      601 atctcgggcg aaacaattcg attaataaga ccaaatgcca aagcttcttc gctggacagt
      661 gtccttccag tcaacatcat ttccaacgct cgacccacac cgagttcacg tgccaatcgt
      721 tgtgttccgc cgtacccggg aatcaagcca agcttcgttt ccggcaagct gaaacttgcg
      781 tccactgatg ccagtcgtaa atgacaagca agcgccaact cgagaccacc gcccgcggca
      841 atactgttga tagcggcgat taccggaacc ggaaagtttt caacccgatc gcatagttgc
      901 tgaccacgtt cggaaagcat cgacgcatct gcgtcccgta gttcgttgat atcggtgcca
      961 gcgcagaacg cgcgttcccc agcgcccgtg agaataacgg cgcgcaagtc attgtcgtct
     1021 tcgagatgac ttaactctga accgagtgct tcaaatatat cgttcgaaag cgcattgagt
     1081 ttttcaggac gattcagacg aaggatcgcc agcacagggg tacgttcgat gagaatgggt
     1141 agttgttcgt tcaaaactct caccaccaaa gaccggggtc cagctaaacc aaactcatcg
     1201 gcgttggatt cttcgggtcc ttcgtgtagt cgtaaaaccc acgcccggac tttcttccat
     1261 acaaacctgc caacaccatt cgctttaaca acggtggtga ggcaaaacgc ttttcacgaa
     1321 actcattgaa catgatttct gcgatgtaat aggttgtgt
//
LOCUS       DATCGC010000961         2533 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_113186, whole genome shotgun sequence.
ACCESSION   DATCGC010000961 DATCGC010000000
VERSION     DATCGC010000961.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2533)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2533
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113186"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..640
                     /locus_tag="VIJ87_09335"
     CDS             <1..640
                     /locus_tag="VIJ87_09335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444653.1"
                     /translation="RVLIAQLFEHFGVRPSIQVLTAAGKQLQQAQIVRYRFGNAEILS
                     IVKDNVALEGIVGQDGVTTYSDSSLGQIAKQEITVRLPKKFFVTDVRSGLKLGYTDLV
                     HSSVIVGDAVILSLSESDNKLMLTGPGNATRGDHVVFQLNSVAPGHRLVRCHVFAPDG
                     SMLPEYARNVLIDATSATFVLPSALNDQPGAYTIRATDIVSGAIAETKVDLK"
     gene            640..1050
                     /locus_tag="VIJ87_09340"
     CDS             640..1050
                     /locus_tag="VIJ87_09340"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025004.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HEY5444654.1"
                     /translation="MKLTDEQQKTLRAAVDRIIPSDNYPGAWQAGVGDYLAQQFEKDL
                     LPFFDTYCTGLASLEAESRKQFEQSFSSLSDEQKDAILNQVEAGDVFATWTVSPQNFF
                     KLLINTTAEGFYSEPQQGGNRNGVSWAMIGFDSI"
     gene            1055..>2533
                     /locus_tag="VIJ87_09345"
     CDS             1055..>2533
                     /locus_tag="VIJ87_09345"
                     /inference="COORDINATES: protein motif:HMM:NF012935.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HEY5444655.1"
                     /translation="MANYDAIIIGTGAAGGIVAGVLAEAGKNILLLERGPALSFSEVG
                     RDHLRNQRLSIYGHNAGPDLEGNPRVFVDPQGKVHTVRPHQPHYHNNAACVGGGTRVY
                     GAQAWRFLPVDFRMASTYGVPEGSSLSDWPIAYDDLEPFYERAEWELGVAGDGSALED
                     KLPRQRGYPLPAVNSSPQTVALRRGAAQLGWSTNPVPLLINTKPYGGREACIGCKYCV
                     GFACPTDAKNGSHNTMIPRALATGLCTLQTGAIVNSIETDTHGTVTGVSYIVQAPHGT
                     EVKKATAKIVVVSAGAIESARLLLNSRSSHHPNGLGNENDQVGRNLQGHLYPRAYGLM
                     REKVFTGIGPGVTIATTQFNHGNPDLIGGGMLADDFIKPPIDFWYDSLPPDLPRWGLA
                     NKQFMRDNYTRVLHVRGPVQDISSPKARVTIDHDVLDRWAIPVARLSGTTHPETVRAA
                     EFMQRRGEEWLRASGCEKVWSYSPGLVLSGGQHQAGTCRMGND"
BASE COUNT          623 a          648 c          649 g          613 t
ORIGIN      
        1 ccgcgtactt attgctcaac tctttgaaca ttttggcgtc cgtccgagca tccaggtact
       61 caccgctgcc ggcaaacaac tgcaacaagc tcaaatcgtt cgctatcgtt ttggcaatgc
      121 agagatcctt tccattgtga aagataacgt cgcgctcgaa ggtatcgttg gccaagatgg
      181 ggttactacc tacagtgact cctcgttagg gcaaatagcc aaacaggaaa tcacagtcag
      241 actaccaaag aaattcttcg ttacggacgt gcgctccggt ttgaagcttg gatatacaga
      301 tttagttcac tcttcagtga ttgttggtga tgccgtgatc ttgagtttga gcgaatccga
      361 taacaaatta atgttgaccg ggcctggaaa tgcgacacgc ggagaccacg tcgtgttcca
      421 actcaattca gtagctcccg ggcatcgcct tgttcgatgt catgtctttg ctcctgatgg
      481 atcgatgctc cctgagtacg ctcgtaacgt cttgatcgat gcaacttcag ccacgtttgt
      541 tctaccctca gcccttaatg accagcctgg tgcgtacaca attcgagcaa ctgacatcgt
      601 ctctggtgca atcgccgaaa cgaaagtcga cctcaagtaa tgaaactaac cgacgagcaa
      661 caaaaaacat tacgggcggc tgtggaccga attattccct cagataatta tccgggtgcg
      721 tggcaagctg gagttggtga ctacctcgcg caacagtttg aaaaggactt gcttcccttc
      781 ttcgatactt attgcacagg tctcgcttcg ctcgaagcag aatcgcgaaa gcaatttgag
      841 caaagctttt cttcgttatc tgacgaacaa aaggatgcga ttctcaacca ggtagaagcc
      901 ggagatgttt tcgcaacctg gacagtttcc cctcagaact ttttcaaact tttaataaac
      961 acgacagccg agggtttcta cagcgaacct caacaaggtg gaaatcgcaa tggcgtctcc
     1021 tgggccatga tcggtttcga cagcatctga acaaatggct aactacgacg cgatcatcat
     1081 cggcacaggc gcagcaggcg ggattgtagc cggtgtattg gccgaagccg gtaagaacat
     1141 cttgttattg gaacgaggtc cagcattgag tttctctgag gtcggtcgtg atcatttgag
     1201 aaatcaacgc ctctcaatct acggtcataa cgccggtccc gaccttgaag gtaatccgcg
     1261 cgtgtttgtg gatccccaag ggaaagtgca tacagttcgt ccgcaccaac ctcactatca
     1321 caacaatgct gcctgcgttg ggggtggcac tcgtgtttat ggagcacaag cctggcggtt
     1381 tttgcctgta gactttcgca tggccagcac ctatggcgta cctgaaggta gttcactctc
     1441 tgattggccc attgcttatg acgatctcga accgttctac gagcgcgcgg aatgggaact
     1501 cggcgtggcc ggcgatggct ccgctttgga ggataaactt ccaagacaac gtggttatcc
     1561 tctgccagct gtgaattcca gtcctcaaac cgttgcctta agacgaggtg ctgctcagct
     1621 tggttggtca acaaatccgg taccacttct aataaataca aagccttacg gtggtcgcga
     1681 agcttgcatt ggttgcaaat actgcgttgg cttcgcatgc ccaactgacg caaagaacgg
     1741 atcacacaac acaatgatcc cacgtgcgtt agcgaccgga ctgtgcacat tacaaaccgg
     1801 cgccatcgtc aattccatcg aaacggacac gcacggtacc gtgactggcg tgtcttatat
     1861 tgttcaagct ccacacggaa cagaagtaaa aaaagcaact gcgaaaatcg ttgtagtgtc
     1921 tgctggagcg atcgaatcag ctcgcttact tcttaactcc aggtctagcc atcatccgaa
     1981 cggcttggga aacgaaaacg accaagtagg tcgcaatctg cagggtcatc tttacccgcg
     2041 cgcttacggt ttgatgcgag aaaaggtttt tacgggtatc ggaccgggtg tgactatcgc
     2101 caccactcag ttcaaccatg gcaacccgga tcttataggt ggaggcatgc tggccgatga
     2161 ttttattaag ccacctattg acttctggta cgactcgctt ccgccagact taccgcgctg
     2221 ggggttggcc aacaaacagt tcatgcgtga caactacacg agagtcctgc atgtgcgtgg
     2281 tccagtgcag gacatatcaa gccccaaagc cagagtgacg attgaccatg atgttttaga
     2341 tcgttgggcg attccagtag ctcgtctaag cggcacaact catccggaga ccgtgcgcgc
     2401 tgcggagttc atgcagcggc gtggtgaaga gtggctgcga gcgagtggct gtgaaaaggt
     2461 gtggagttac agtccgggcc tggtgttgag cggcggtcag catcaggctg gaacgtgtcg
     2521 catgggcaat gac
//
LOCUS       DATCGC010000962         2180 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_47574, whole genome shotgun sequence.
ACCESSION   DATCGC010000962 DATCGC010000000
VERSION     DATCGC010000962.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2180)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2180
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47574"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..617)
                     /locus_tag="VIJ87_09350"
     CDS             complement(<1..617)
                     /locus_tag="VIJ87_09350"
                     /inference="COORDINATES: protein motif:HMM:NF013257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HEY5444656.1"
                     /translation="MRILIVKLGSIGDIVHTLPALAAIRGGLPQAEISWVVERSSSEI
                     LRDNPILDHLIEVDTKALRRGLMSGETLRAPRQQLRRLRASAFDIALDFQGLLKSASI
                     ARLSGARRVFGYSREGLREPPSTLLLSKRIHVPKHTHVIFKALQLVNGALDLPIPVNS
                     SELSFPISISQQAEDEAFEAAASTGGSYAILNPGGGWPTKLWNPER"
     gene            complement(627..1070)
                     /locus_tag="VIJ87_09355"
     CDS             complement(627..1070)
                     /locus_tag="VIJ87_09355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444657.1"
                     /translation="MTKKLAVLLIVAVCCTVGVFGQAKKSRFDPDGSFWINGGAPEGF
                     LDFSGINLNAKRVRRLPPSGVQITSGKSFRFKTLSVKQASFTFTTVAVSNISYSFSGK
                     FLKGGVFETAGLDDETPVLEGVLIKYKGSQKVAEAKLKFVYFGGT"
     gene            complement(1067..1549)
                     /locus_tag="VIJ87_09360"
     CDS             complement(1067..1549)
                     /locus_tag="VIJ87_09360"
                     /inference="COORDINATES: protein motif:HMM:NF013621.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyltransferase/cytidyltransferase family
                     protein"
                     /protein_id="HEY5444658.1"
                     /translation="MTSPQNVLDRKHLIEVVSIARRNGARIVFANGCFDVLHVGHIRY
                     LEGARQLGDILIVGVNSDHQVAIQKGSGRPIMPEAERAELLASLESVSYVTIFDEPTV
                     EELLLALKPDVHAKGTDYTVDTVPEREVVRSYGGQVAIVGDPKDHSTSQILSRMGEQP
                     "
     gene            complement(1549..>2180)
                     /locus_tag="VIJ87_09365"
     CDS             complement(1549..>2180)
                     /locus_tag="VIJ87_09365"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HEY5444659.1"
                     /translation="QQVIRVDYEDAPISDPDLREAIVNELTRRTAEASAVIVSDYNYG
                     AVNETAVDVLREVTRTRQLPVLVDSRFRLSSFTGLTSATPNEDEVEHLLQAPITSTEQ
                     LESTATELKRKLDYRALLVTRGANGMMLLEGNEPPLHIAAVGAHQPVDVTGAGDTVIA
                     TFALALASNSSFSDAARLANYAGGLVVMKRGTASITAHELEHSIINSET"
BASE COUNT          532 a          565 c          557 g          526 t
ORIGIN      
        1 cgctcaggat tccaaagttt cgtaggccag ccgccacccg gattcaggat cgcataagag
       61 ccaccggtgc tggctgctgc ctcgaaagcc tcgtcttctg cttgctgcga aattgaaata
      121 ggaaacgaaa gttcggatga atttacagga attggtaggt ccagggcccc gtttacaagt
      181 tgaagggctt taaagattac gtgggtatgt tttggaacgt ggattcgctt ggatagcagt
      241 aaggtactcg gtggttctcg tagaccttct cgactatacc caaaaacacg acgcgcgccg
      301 gaaaggcgcg cgattgaggc ggactttaga agtccttgaa aatctagtgc tatatcgaag
      361 gccgaggcgc gtaaccgacg taactgctgg cgcggtgccc gcagcgtctc cccagacatc
      421 agtccgcgcc tcagcgcctt cgtgtcgact tcgatgaggt gatctaagat cgggttgtct
      481 cgtaaaattt cagaagatga tcgttctacc acccaggaga tttcagcctg gggcagacca
      541 ccgcggattg cagcaagggc cggcaacgtg tgaacgatgt cgccgatact tcccagtttt
      601 acgatcagaa tccgcatcgc tacggtctaa gttcccccaa agtaaacaaa cttgagcttt
      661 gcttccgcaa ctttctgact acctttgtat ttgatcaata ctccttcaag cacaggagtc
      721 tcgtcatcga ggcctgccgt ttcaaaaacg ccgcccttca aaaactttcc tgagaagctg
      781 tacgaaatat tggatacagc cacagtggtg aacgtaaagc tggcttgctt tactgacagc
      841 gtcttaaaac gaaaagactt gccggaggtt atttgaaccc cagagggtgg aagtctccgc
      901 acacgtttgg cgttgagatt aatcccgctg aagtcgagga atccctctgg cgcacctcca
      961 ttgatccaaa aggaaccgtc aggatcaaag cgactctttt tggcctgtcc gaaaactccg
     1021 accgtacagc agactgcaac gatcaaaagt acagctaact ttttagtcat ggctgttctc
     1081 ccatacgcga cagaatctga gacgtagaat gatccttcgg atcgccaaca attgctacct
     1141 gcccgccgta cgaccttacg acttcgcgct ctggaacggt atcgacagta tagtccgttc
     1201 ctttcgcatg aacgtccggc ttcaaggcta acagtaattc ttcgaccgtc ggttcgtcga
     1261 atatcgtgac gtagctgacg ctttctaacg acgccaaaag ttccgcccgt tcagcttctg
     1321 gcatgattgg acgtcccgaa cctttctgaa ttgctacctg atggtctgag ttaacgccaa
     1381 cgataagaat atcgcctaac tgacgggccc cttccagata tctgatgtgt ccgacatgga
     1441 gcacgtcgaa acagccgttc gcaaaaacaa tgcgggcacc gttgcggcgg gcaatggaaa
     1501 ccacttcgat taggtgtttt cgatccagga cgttttgcgg agaagtcatt aagtctcaga
     1561 attaataata gagtgttcga gttcgtgagc agtgattgag gctgttcctc gtttcatcac
     1621 cacgaggcca cctgcgtagt ttgccaagcg agcggcatcg gagaaggagg aattagaagc
     1681 caaggcaagc gcgaacgtcg caattaccgt atcaccggcg ccggttacat ctaccggttg
     1741 gtgggcacct actgcggcaa tatgaagtgg cggctcattg ccctcgagta gcatcattcc
     1801 atttgctccg cgagtgacga gcaacgctcg gtaatcaagc ttcctcttga gttctgtggc
     1861 tgtcgactca agctgttccg tggaagtgat cggagcctga agcaagtgtt cgacttcgtc
     1921 ttcattaggt gttgctgaag tcagtcccgt gaaactggag aggcggaagc gtgaatcgac
     1981 gagcaccggt aattgtcgtg ttctcgtaac ctcccgcaaa acatcaacag ccgtttcgtt
     2041 aactgcgcca tagttgtagt cagacacgat cacggcgctg gcttcagcag ttcggcgcgt
     2101 caattcatta acgatcgcct cgcgtaaatc aggatcagaa ataggtgcgt cttcatagtc
     2161 cacgcgaata acttgttgac
//
LOCUS       DATCGC010000963         1414 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_447062, whole genome shotgun sequence.
ACCESSION   DATCGC010000963 DATCGC010000000
VERSION     DATCGC010000963.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1414)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1414)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1414
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_447062"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..421)
                     /locus_tag="VIJ87_09370"
     CDS             complement(<1..421)
                     /locus_tag="VIJ87_09370"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY5444660.1"
                     /translation="MVSERVMGSDYMHWAKTSSNAKFNLATSGLANLRLKDLRVSLDD
                     LEITDGGYGYAPLLRAIAERYRVNTDSIVTAAGTTFANHLAMAALVQPGDEVVFEQPA
                     YEPMLAAVRYLGADVKRVERRFENGFRVDPDEIEAAVT"
     gene            complement(421..>1414)
                     /locus_tag="VIJ87_09375"
     CDS             complement(421..>1414)
                     /locus_tag="VIJ87_09375"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEY5444661.1"
                     /translation="TFSRYFVEMAHVQIRDSVLAAIVLAVLTIINCLGVRAGSTVQSI
                     LMVLKIVAIVGLVVCGLLMVAPSAVAPVASGVLDRPVSLDLLTAIGAAMVPVLFAYGG
                     WQTATFVAGEIKEPARNLSRGLIFGVIGVVLLYLAANVVYIRVLGTDGLALAKAPASA
                     VMRLALGDFGARIIATGIAISTVGFLSQSMLTAPRVYFAMAQDGLFFKQVARVHPRTR
                     APIVAIALQGVLAIVIAFWGRYEQILNYVVSMDFIFFGLTACCIFVFRKREAMKSEAI
                     RTPLHPFTTLLFIAACWLVVINTVIRYPSNTLIGMIILIAGVPAYFFWSRRSHN"
BASE COUNT          371 a          403 c          341 g          299 t
ORIGIN      
        1 cagttactgc tgcctcgatc tcgtcaggat caactctgaa cccattctcg aatcttcgtt
       61 caactctctt aacgtcggcg cccaggtaac gcacagcggc cagcatcggt tcataggccg
      121 gctgttcgaa aacaacttcg tcaccgggct gtactaacgc cgccatcgcc aggtgatttg
      181 cgaaggttgt tcccgcagct gtcacaatgg aatcagtatt gactcgataa cgctctgcga
      241 ttgcgcgcag caacggcgcg tacccgtaac ccccgtcagt gatctccaaa tcatcaagtg
      301 agacacgcag atctttcagc ctcagatttg caagtccact cgtcgcgaga ttgaacttcg
      361 cgttcgagct ggtctttgcc cagtgcatgt aatccgagcc cattactcgc tcgcttacca
      421 tcagttgtga ctccttctac tccagaagaa atatgcaggc acgcctgcaa taagaatgat
      481 catcccgatg agtgtgttac tcggataacg aatgaccgtg ttgattacta cgagccaaca
      541 cgcagcaatg aacaataacg tcgtaaaggg atgaaggggt gttcgtatcg cctcagactt
      601 catggcttcg cgttttctga atacgaagat acaacacgcg gtcagaccga aaaaaatgaa
      661 gtccatcgac acgacatagt tgagaatctg ttcgtaacgt ccccaaaacg caatcactat
      721 tgcgagcaca ccttgcaaag cgatcgccac gatgggcgcc cgtgtgcgtg ggtgaaccct
      781 ggcgacctgt ttgaagaaca atccatcctg tgccattgca aaataaacac gtggcgccgt
      841 caacatgctt tgactcaaaa agcccacggt tgagatcgca atgccggtag cgattatccg
      901 tgcgccgaaa tcgccaagcg ctaatcgcat gactgctgaa gctggtgctt tggcgagagc
      961 gagtccgtca gttccaagca cccgaatgta gacaacgttt gcggcaagat agagaagtac
     1021 gactccgata acaccgaaga ttagtccgcg ggataaattc ctggcaggct ccttgatttc
     1081 gcctgcgaca aacgtcgctg tctgccaccc tccataagca aaaagtaccg gaaccatcgc
     1141 agcgccaatg gcagtcaata gatctaatga aaccggacgg tccaacacgc ccgacgcaac
     1201 gggcgcaacg gcgcttggcg cgaccatgag cagaccacac accacgagtc caactattgc
     1261 gacaatcttc aacaccatca ggatgctttg cactgtgctg ccggctctga cgccgaggca
     1321 gttgatgatt gtcagcacag ccagcactat tgccgccaac actgagtcac gaatttgcac
     1381 gtgggccatc tcgacgaagt aacgagagaa cgta
//
LOCUS       DATCGC010000964         2569 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_247222, whole genome shotgun sequence.
ACCESSION   DATCGC010000964 DATCGC010000000
VERSION     DATCGC010000964.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2569)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2569
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247222"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..312)
                     /locus_tag="VIJ87_09380"
     CDS             complement(<1..312)
                     /locus_tag="VIJ87_09380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444662.1"
                     /translation="MNRKLIRTTLAEVKGKVREVPQPRERSNGSRSSNEGGQQRERER
                     DRDRDRSTPQQASSSLQVKKRVPPPNETNAEIFYYKKQIDAHTVMVIVLLDGEEIEGT
                     IE"
     gene            complement(808..1959)
                     /gene="ftsZ"
                     /locus_tag="VIJ87_09385"
     CDS             complement(808..1959)
                     /gene="ftsZ"
                     /locus_tag="VIJ87_09385"
                     /inference="COORDINATES: protein motif:HMM:TIGR00065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HEY5444663.1"
                     /translation="MTPDARQPGTGINIFIDDDPPLTGARIKVIGIGGGGGNAVNRMI
                     EAGIEGIEFLVANTDLQALKRSRAPIKIQLGSRLTKGLGAGADPGVGREAALEDTDKI
                     IEVLEGADMVFVTTGLGGGTGTGAAPIIASLATELDALTVAVVTKPFHFEGRRRMHQA
                     DQGLRELRECVDTVITIPNERLLHTVDRGVSLGDSFRVADDVLRQAVQGISDLITVPG
                     LINLDFADVKSIMQGMGMALMGAGRAKGENRAIEATQQAISSPLLEEATIQGAKGVLI
                     NITGGPDLTLFEVNAASSIIRESADDDANIIFGAVIDETLTDEMRITVIATGFDKEAM
                     PLVSAAATTSMPTAPPRFVTRPPDDLPRPMMGARADDLDVPTFIRKKAD"
     gene            complement(2093..>2569)
                     /locus_tag="VIJ87_09390"
     CDS             complement(2093..>2569)
                     /locus_tag="VIJ87_09390"
                     /inference="COORDINATES: protein motif:HMM:NF025806.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division FtsA domain-containing protein"
                     /protein_id="HEY5444664.1"
                     /translation="CACSSSLSEMERGELVDVPSVGGRPPRQLSRQILCDILQPRAEE
                     VLMHVADEIKDAGWERQLSSGVVLTGGGALLNGMTEIAEQVFDAPVRLGYPERDRFGG
                     LIEDIQSPSWAAAAGLALLAHRTQAAEIRTGISRRGSTGKLTHFVSRFRNRFGSIF"
BASE COUNT          623 a          702 c          618 g          626 t
ORIGIN      
        1 ctcaatcgtt ccttcaatct cttcgccatc tagcaacacg atcaccatca cggtgtgcgc
       61 atcgatctgt ttcttataat aaaagatctc agcgttggtc tcgttcggcg gtggaactct
      121 cttctttact tgtaacgagg acgaagcttg ctgcggggtg gagcgatcgc gatcgcgatc
      181 gcgttcgcgt tcgcgttgct ggcctccttc attagagcta cgcgaaccat ttgagcgctc
      241 tctgggctgc ggaacttctc ggaccttacc tttcacttcc gcgagggttg ttcttatgag
      301 tttacgattc actgataatt acctccataa atcagatgac ggatggttat ccgtcggggc
      361 tcatgatgtt taagtcagga ctttgtgctt tgccggatca gcgtcaaagc tctcgcaggc
      421 agcggccatc cgaggagagg agcgaaacta tacccgtaat ggaatttcct gcaagtggat
      481 gagcgacatg ctacacaagc aaacaccaaa aagcaaagcg ctattgttat agaagattgc
      541 agatttcagg ttgcagattg gaaggctcgt caagcttgca gtgtcaaatg ttatcaaagc
      601 gccgattaac cagaatcgat tgccgattca ggatctaacg agattgtcga atgatgctaa
      661 gtatgaatta cgatgtgaaa gccaggaacg agattgtgtg gtgaagtcag caatccaatt
      721 ggacattcag agtcccaaaa accaaattgc agattgaatg tcttaaacac aagcattcaa
      781 cctgcaatct gcagtcttca gtgtcgatca gtcagctttc ttacgaatga acgtcggcac
      841 atccaaatca tctgctcgcg cacccatcat gggacgcggc aaatcatccg gaggccgagt
      901 tacgaaacgc gggggcgcgg ttggcatcga tgtcgtagct gcggcagaaa caagtggcat
      961 cgcctcttta tcaaatccag ttgcgatgac tgtgattctc atttcgtcag taagggtctc
     1021 atcaatcaca gcgccgaaga tgatattggc atcgtcatca gccgactcgc ggatgatcga
     1081 cgacgctgcg ttcacttcaa acaaggtaag atccggtccg cctgtgatgt taatgagcac
     1141 gcccttagcg ccttgaatcg tcgcttcttc gagcaacgga gatgagatag cttgctgcgt
     1201 tgcttcgata gctcgattct cgcccttcgc tcttccggcg cccatcaggg ccatgcccat
     1261 tccctgcatg atggacttca cgtctgcaaa gtccagattg attagtccgg gaaccgtaat
     1321 cagatcacta atgccctgga ctgcctggcg caaaacatcg tcagccaccc ggaaggaatc
     1381 acctaacgaa acccctcgat ccaccgtgtg gagcaatcgc tcatttggaa tcgtaattac
     1441 ggtgtcgacg cattcgcgca actctcgcaa accttgatcg gcctgatgca tcctgcgtcg
     1501 gccttcgaag tgaaacggct tcgtcacgac ggcaaccgta agcgcatcga gttcagttgc
     1561 gagtgaagca atgatcggcg cggcacccgt tcctgttccg ccacctaaac ccgtggtaac
     1621 gaaaaccatg tcagcgcctt cgagtacttc gattatcttg tcagtatctt cgagagcagc
     1681 ttcacgacca acaccgggat cggcaccagc accgaggcct ttcgttagtc tgctgccgag
     1741 ttggattttg atcggcgctc gtgatcgttt cagcgcttga agatcagtat tagcaactaa
     1801 aaactcaatg ccttcgatac cggcttcgat catgcggttg acggcattgc ctccgccacc
     1861 tccgatacca ataactttta tccgcgctcc ggtgagcggc ggatcatcat caatgaaaat
     1921 attaatgcct gttccgggtt gacgagcgtc cggtgtcata gttagttcct ctctcccaaa
     1981 acgggatggc ttccaaggcc tcttccttct atgttgggct gctggcgcca tcggcatcga
     2041 tatatagcgg acaatatctt gtgcaaccgg ggcgacagca tacaacaact tgtcagaaaa
     2101 tactaccgaa acgatttcgg aatcttgata cgaaatgcgt taatttccct gtagatccgc
     2161 gcctactaat gcctgtgcga atctccgctg cttgtgttct gtgagcgagc aatgcgagtc
     2221 ccgcagctgc tgcccacgac gggctttgga tgtcttcaat caaaccgcca aaacgatctc
     2281 gttcgggata cccaagacgt accggcgcat caaaaacttg ttccgcgatc tcagtcatgc
     2341 cgttgagcaa agcacctcca ccggttagca caacaccact cgagagttgc cgttcccatc
     2401 ccgcgtcttt gatctcatca gcaacatgca tcaacacttc ttcagcacgt ggttgcaaaa
     2461 tgtcgcaaag gatctgtcgc gaaagctgac gcggaggtcg accaccaacg gaaggaacat
     2521 cgaccagctc cccgcgttcc atttcactca acgaactact gcacgcaca
//
LOCUS       DATCGC010000965         1136 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_82714, whole genome shotgun sequence.
ACCESSION   DATCGC010000965 DATCGC010000000
VERSION     DATCGC010000965.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1136)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1136
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82714"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1136)
                     /locus_tag="VIJ87_09395"
     CDS             complement(<1..>1136)
                     /locus_tag="VIJ87_09395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444665.1"
                     /translation="TDIAIFDNVTYIRGKHSLKTGFLYVRNRKDQNGRSGYTGSLAFN
                     TNATASTGNSFADALLGNFRTYSEANDDPIGFFRFNQEEAYLTDSWKVRRNLSFEIGA
                     RFYHYEPTYTQANNIANFDPSRYNPAQAVTVLPNGNIDLTKGGNRFNGLVRAGNGIPT
                     EERGRVSVSDATLALVPTGAPRGFYQAANKIGPRVGFSYAPFDDDKTSIRGGFGIYYD
                     KVEGNLIFSQVNVPPFVSTPSLDNGNISNPSGGTPANAALLGSINSIDPNLDISSSMN
                     FSLGVQRELPRGFFVEANYVGNLGRHLIRQPDLNQPSFAALTANLPVNGGANVNTNAL
                     RPYKGFTQILYRLSDANSSYNGMQLYAAKRKGNLELTVSYTWSKA"
BASE COUNT          277 a          273 c          302 g          284 t
ORIGIN      
        1 gccttggacc acgtgtagct caccgtaagc tcgagattac ccttgcgttt agcggcatag
       61 agttgcattc cgttataact ggaattggcg tctgacaatc gataaaggat ttgcgtgaaa
      121 cctttgtagg gacgcagtgc attggtgttt acattggcac cgccgttgac cgggagattc
      181 gcagttaatg cagcaaaaga cggctgatta agatcgggtt gacgaatcaa gtgccgccct
      241 aaattgccaa catagttagc ttcgacaaag aaaccgcgtg gaagttctct ttgcactcct
      301 aaactgaagt tcatcgagga agagatatcc aggtttggat cgattgaatt gatcgagccc
      361 agcagcgccg cgttagccgg agttccgcct gaggggttcg agatattgcc gttgtctaag
      421 ctcggcgtac tcacaaacgg tggaacgttc acctgcgaaa agatcaggtt gccctcaacc
      481 ttgtcgtaat agattccaaa gccaccacga attgaagtct tatcgtcatc gaacggcgca
      541 taggaaaatc caacgcgagg accaatcttg tttgcggcct gataaaagcc gcggggtgca
      601 cccgttggca caagcgcgag agtcgcatca ctaacactta cgcggccgcg ctcctcagtg
      661 ggaattccat ttccagctct aacaaggccg ttgaagcgat tgcctccctt agtcaggtcg
      721 atgtttccgt ttggaagaac agttacggcc tgggccgggt tgtagcgact tggatcaaag
      781 ttcgctatgt tgtttgcctg ggtataggtt ggttcgtagt ggtaaaaacg ggcgccaatc
      841 tcgaagctta aattgcggcg aactttccaa ctatccgtca aatacgcttc ttcctgattg
      901 aagcggaaga aaccgatcgg atcgtcgttc gcttcactgt aagtccggaa gttgccaagc
      961 aatgcatcag caaaggagtt accggttgac gccgtggcgt tcgtattgaa agccagactt
     1021 ccggtgtagc cagagcggcc attctgatct ttgcgattcc gaacgtacag gaatcccgtc
     1081 tttagtgaat gcttgccccg gatataggtt acgttgtcaa agatcgctat atcggt
//
LOCUS       DATCGC010000966         1445 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_113321, whole genome shotgun sequence.
ACCESSION   DATCGC010000966 DATCGC010000000
VERSION     DATCGC010000966.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1445)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1445)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1445
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113321"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(250..690)
                     /locus_tag="VIJ87_09400"
     CDS             complement(250..690)
                     /locus_tag="VIJ87_09400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444666.1"
                     /translation="MIRALYNAHRPWDHKELNLGNGAVLSKYFSPELTKLFLKNAQLE
                     RDCPKGDLCGLEFDPILGSQDFDDHLNFKLHITKATPPQAGRFEARFKLFNEQKPEDE
                     QVLVFQLLQEKNGWRIDDIVYTKDNTALKAVITAILDEAAHLKE"
     gene            complement(814..>1445)
                     /locus_tag="VIJ87_09405"
     CDS             complement(814..>1445)
                     /locus_tag="VIJ87_09405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5444667.1"
                     /translation="AYYNRAMLKKEKGDATGADADFKRAQKLNPDLVSKGSAPDSSST
                     GNGGATGTTVSLLDGKLKLDIAPGFSRDADDPKTPKTLAKFSGPDGAWGEVLRGTHGL
                     TPDKLDGYLKMRVAEYSKGFNWLPKDSHLQWLKKDIVAIDGRKWADWRYVPMLKGTKD
                     YSHSPVYTRFLTTSYKGQLLEITFTSNLNTAPELKQKIDHMMGSVQLEE"
BASE COUNT          308 a          380 c          376 g          381 t
ORIGIN      
        1 tgaggtggtg acaacaatcc cgtaatgtcc gtcgggcgaa cgcgatttct cgtgaagcgt
       61 taaatgttcc ggccaatctg ccgcagtgac atcaacagtt gtcagaccca gagccactag
      121 cacgaggcag acaactctaa ccgggatttg gcgattatga gattgcaatc gccctttcat
      181 ttgtcgaagt ccactgccag gaacatgcga cacagcagag agcggcgact aacaaaacta
      241 ttctaacgtt cattctttga ggtgagccgc ctcatccaga atcgcggtaa tcactgcctt
      301 cagtgcggtg ttatccttgg tataaacaat gtcgtcaatg cgccatccgt ttttctcctg
      361 aagaagttgg aaaacgagta cttgctcatc ctcaggcttc tgttcgttaa acaatttgaa
      421 gcgtgcttcg aatcggccag cttgcggcgg cgttgcctta gtgatgtgaa gcttgaagtt
      481 gagatggtcg tcgaagtcct gagacccaag gattgggtcg aattcgagtc cacaaaggtc
      541 gcccttggga cagtcccgct ccagttgcgc attcttcagg aataacttgg ttagttcggg
      601 actgaaatat ttcgacagta cagcgccatt gccgaggtta agttctttgt ggtcccacgg
      661 ccggtgagcg ttgtaaaggg cgcgaatcac ctcctcagga ccatcgttcg cggcgacggc
      721 agatgacgca accgccgtca gcaataagac aataaccgct ttgtgcttga tgggcttcag
      781 gttctgaaaa ttagcctgcc gggttcgtgt ctctcattct tcgagctgca ctgagcccat
      841 catgtgatca atcttctgct ttaactccgg cgccgtgttc aggttcgaag taaaggtgat
      901 ctctaacagc tggcctttgt aggaagtggt taggaagcgc gtgtagacag ggctgtgcga
      961 atagtctttg gttcctttta gcataggaac gtaacgccaa tccgcccact tgcggccgtc
     1021 gatagcaacg atgtctttct tgagccattg aaggtgcgaa tctttcggca gccagttgaa
     1081 gcctttgctg tattcggcca ctcgcatttt aagataaccg tccagtttat ccggcgttag
     1141 tccgtgtgtt ccgcgcaaca cttctcccca cgcgccgtcg ggtcctgaaa acttggcgag
     1201 cgttttagga gttttcggat cgtcggcatc gcgcgaaaaa cccggcgcga tgtcgagctt
     1261 tagcttgcca tccagaagac tgacagtcgt tcctgtcgct ccgccattcc cggtgctgct
     1321 ggaatccggc gccgatcctt tgcttactaa atccgggttc agtttttgag cgcgtttgaa
     1381 atctgcgtca gctcccgtcg catctccctt ctccttcttc agcatcgcgc gattgtagta
     1441 cgcgc
//
LOCUS       DATCGC010000967         2204 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_47751, whole genome shotgun sequence.
ACCESSION   DATCGC010000967 DATCGC010000000
VERSION     DATCGC010000967.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2204
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47751"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1145
                     /locus_tag="VIJ87_09410"
     CDS             <1..1145
                     /locus_tag="VIJ87_09410"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEY5444668.1"
                     /translation="EQLDPTNVETPRRRIPLKRRLLYIAVIYCCFLLLLLAVEVITRL
                     TMSHVSSLDLFVATPQQRMQVSDPKQAGIFEGDPLLLWRLKPNLNHAVWDFTVLSTNA
                     QHFRADYPIENKPPGTYRIVCLGDSVTFGYRVPVVWPDKPTEYDPEWLPFPMLLEKQL
                     RAANLDRQVEVFPMAVPGYTSQQGLAWLRRDIDRLQPDMVIASFGWNDVSLSDAPDRE
                     AIRTDWYPVTVRWLIDHSQAFAHATRWLRSGNTVPAKKPRPVPRVSENEYLSNFGAIV
                     DLVRSRQAGLIVIGAPYRDATTNPTEAELMKKYRTALRTSMQEKQVPYLEVLELTEAA
                     APVNEGFFGELIHPNHMGHRLLASELLKMMARNKLVGDLKVPDFVP"
     gene            1309..1758
                     /locus_tag="VIJ87_09415"
     CDS             1309..1758
                     /locus_tag="VIJ87_09415"
                     /inference="COORDINATES: protein motif:HMM:NF020977.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HEY5444669.1"
                     /translation="MTLGEKIVSDLTASMKAQDSARTSTLRMVKAAMMNRQIEKGGEL
                     DDDEVSKLLRSLVKQRRDSIEQYEKAGRQELAAKEAGEIEVIEAYLPQAATREEIEAA
                     VNDAIASSAATSMKDMGKVMKAAQTVLSGKNADGRLISEIVKAKLGG"
     gene            1918..>2204
                     /locus_tag="VIJ87_09420"
     CDS             1918..>2204
                     /locus_tag="VIJ87_09420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444670.1"
                     /translation="MTHVTGIGGIFFKAEDPKSLKEWYREHLGIDAGDYGATFNWRDD
                     NDPTKQGQTLWTPFPKDTKYFDPGTAPFMINYRVADLDGLVKALRDGGVEV"
BASE COUNT          604 a          545 c          576 g          479 t
ORIGIN      
        1 ccgaacaact tgacccaacc aacgttgaaa ctccacgaag acgcatccct ctcaagcgtc
       61 gactcctcta catcgcagta atctattgct gcttcctgtt gctgctgctt gccgttgaag
      121 tgatcactcg cttaacaatg tcgcacgtct caagtctaga cctcttcgtc gcaacgcctc
      181 aacaaaggat gcaagtctca gatccgaaac aagccggaat cttcgagggc gatccattac
      241 tgctgtggcg gctaaaacca aatctcaacc atgcggtttg ggacttcacg gtattgtcga
      301 ccaatgccca acactttcgc gccgactatc caatcgaaaa caaaccgcca ggaacctacc
      361 ggatagtctg tctcggcgac tctgtgactt ttggttatcg ggtaccggtt gtttggccgg
      421 acaaacccac cgagtacgat cccgagtggc ttcccttccc gatgttgctt gaaaaacagc
      481 tgcgcgcggc aaatctggat cgacaagttg aagtgtttcc gatggctgta cccggttaca
      541 cgagtcagca gggtctcgcg tggttgcgtc gtgacattga tcgtcttcag ccagacatgg
      601 ttatcgcaag ttttggttgg aacgatgtga gtctcagcga cgctccggat cgtgaagcga
      661 tcagaaccga ctggtaccca gttacagttc gctggttgat agatcacagc caggcatttg
      721 cacacgccac tcgatggctt cgttccggca acacggttcc ggcgaagaaa ccaagaccag
      781 tccctcgtgt ttcagaaaac gagtacctaa gcaacttcgg ggcaatagta gatctggtaa
      841 gaagcaggca ggcgggcttg atagtgatag gggcgccgta tcgcgacgcg acgacaaatc
      901 ctactgaagc ggagttgatg aagaaatacc gcacggcgtt acgcacgagc atgcaggaaa
      961 agcaggtgcc gtatcttgag gtgctagagt taacggaagc ggcagcaccc gtgaatgaag
     1021 gattctttgg tgaactgatt catcccaatc acatgggcca caggttactg gcttcagagc
     1081 tattgaaaat gatggcccgt aacaaactag tcggcgatct gaaagtcccg gacttcgtgc
     1141 cctagcgtgt ggcacagact tcagtctgtg ttgaatcggt tagatggttc aatgcgaaag
     1201 aacacagact gaagccacac gctttgaatc tgcggctcaa attattgccc agagacgaca
     1261 agacagacgc acatcggaca taatgcatgc tggaggaaag tcgcaatcat gacgcttggt
     1321 gaaaagatag tttccgatct gactgcttcg atgaaagcac aggactcagc gcgaacgtcg
     1381 acgctgcgaa tggttaaagc agcaatgatg aaccggcaaa ttgaaaaggg tggcgaactt
     1441 gacgacgacg aggtttcaaa actgcttcgt tcgctcgtca aacaacgacg tgattcaatc
     1501 gaacagtatg agaaagcagg gcgccaggaa ttggctgcga aggaagccgg cgaaatcgag
     1561 gttatcgaag cgtaccttcc tcaagcggcc acacgagaag agatcgaagc cgcggttaac
     1621 gacgcaatcg cttcgtctgc tgcgacctca atgaaggaca tgggcaaagt gatgaaggca
     1681 gcccagactg ttttgtcagg caagaatgca gatggacgtc tgatcagcga aattgtcaaa
     1741 gcaaaactcg gtggatgatt tcaacgtccg atatgcgtct gtcttgtcgt ggccgggaaa
     1801 tatttagcca cagatttacg taagcaaaac gcagagaaga aaagctttta caggaaggta
     1861 gtactttcgt atttcaggca ccctggaact atgcaaccaa ctttgaggaa ctaaacaatg
     1921 acccacgtaa ctggcatagg cggcatcttc ttcaaggctg aagatccgaa atcgttgaag
     1981 gaatggtatc gcgagcacct cggaatcgat gccggagact acggagcgac cttcaactgg
     2041 cgcgatgata acgaccctac aaaacaaggt cagacactct ggacgccttt tccaaaagat
     2101 acaaagtact tcgaccctgg cacagcacct ttcatgatca actatagagt tgctgatctt
     2161 gatggtttag tgaaggcact ccgggatgga ggtgtcgaag tcaa
//
LOCUS       DATCGC010000968         1191 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_447162, whole genome shotgun sequence.
ACCESSION   DATCGC010000968 DATCGC010000000
VERSION     DATCGC010000968.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1191
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_447162"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(250..>1191)
                     /locus_tag="VIJ87_09425"
     CDS             complement(250..>1191)
                     /locus_tag="VIJ87_09425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444671.1"
                     /translation="SAGQGANNTALGATVANPFFCTTPNATGTGCTTGSALFVGAGAT
                     TSVRQLLRPFPNFGDINTTVNDGSSSYHSGQFSLNKRFSQGYGMQFAYTKSRWMEATE
                     FLNAGDASPFRQRSPQDAPNRFSMSAFYELPFGKGQPIGSHMNKWADAAVGGWQIQGS
                     YVYQSGFPVRFANDAFYLGGQIAIDSPTVGQWFNPAAFISVVGGNPTCGAFATANASC
                     ATPVDHLRTLPFYFGDVRSDPINNVDLGLRKDIHVREGMKIQLRMEFINAFNHPLLNV
                     GTGQITVNPGSAQFGQVVASNQQNYARRAQMLVKFIF"
BASE COUNT          311 a          307 c          317 g          256 t
ORIGIN      
        1 cagggacggc ggccgacgcg actaatgcag aaaggaatgt tcgacgtgat ggcatggtgt
       61 acgagcaggc agcaatcttc caggttgaac ttgaactacc caataacagc tgaggctcta
      121 taaaaacctt aagagagagg cgactagaga ttacacagtc tctgccgtgg ctgacatttc
      181 tgcaaagaca aaaatgggga gtctgctcaa aagcaaactc cccaaaaagg taaagcagaa
      241 cggtcgagtt tagaagatga acttcaccaa catctgtgct cgacgtgcgt agttctgttg
      301 gttcgaagcg acaacttgac caaactgcgc cgaacctggg ttaaccgtga tttgtcctgt
      361 gccgacgttc agcaacggat gattgaaagc attgatgaat tccatacgaa gttggatctt
      421 catgccttct ctcacatgaa tgtccttgcg caggcccaaa tcgacgttat tgattgggtc
      481 tgaccttaca tcaccgaagt aaaacggcaa cgttcggaga tggtcgactg gagtggcgca
      541 gcttgcgttg gcagttgcga acgctccgca ggtcgggttg ccgccaacga cggaaataaa
      601 cgctgccgga ttgaaccatt gcccaacagt tggactgtca atagcaatct ggccaccaag
      661 gtagaacgca tcgttagcaa atctcacggg gaaaccagac tgataaacgt aggatccctg
      721 aatctgccaa ccaccgacag ccgcatctgc ccacttgttc atatgcgacc cgattggctg
      781 acccttgcca aacggcaact cgtagaaagc actcatcgag aaacggtttg gcgcatcctg
      841 cggcgatctt tgtctgaatg gtgacgcatc gccggcatta aggaactccg tcgcttccat
      901 ccacctggac ttggtataag cgaactgcat tccgtaaccc tgtgagaagc gtttgttcaa
      961 gctgaactga cctgaatgat acgaactgct tccatcgttg acagtggtgt tgatatcacc
     1021 aaagttcggg aatggacgca gcaactgacg gacactggtc gtcgcgccag cgcctacgaa
     1081 gagcgcgctg ccggtggtgc aaccagtacc ggtggcgtta ggagtcgtac agaagaacgg
     1141 attcgccact gtcgcaccga gggccgtatt gttggcacct tggcccgccg a
//
LOCUS       DATCGC010000969         1980 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_280235, whole genome shotgun sequence.
ACCESSION   DATCGC010000969 DATCGC010000000
VERSION     DATCGC010000969.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1980)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1980)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1980
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280235"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1970)
                     /locus_tag="VIJ87_09430"
     CDS             complement(<1..1970)
                     /locus_tag="VIJ87_09430"
                     /inference="COORDINATES: protein motif:HMM:NF014851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 2 TIM barrel-domain
                     containing protein"
                     /protein_id="HEY5444672.1"
                     /translation="MKSLRLLTVLVVCVFGSVANAQTATTNTEVRYLSGTGTDDAVLW
                     DFFCSEGRNSGKWSKIHVPSNWETEGFGTYQYGGDHQRAENPFPKEQGKYKLNFEAPL
                     KWKNRVVRLVFEGSMTDTEVWINGKSAGPVHEGSFYRFKYDITDLLNYGQANLLEVTV
                     SKESANASVNNAERRGDYWNFGGIFRPVYLEVLPESFIDWTAINARADGSFSVDVNLQ
                     GVGDQVVAQIVDAAGVSVGRSFASNADKQQTVHLQTSIARPKLWTAETPNLYRVRLTL
                     VKNSRPVHSKTERFGFRTFEVRKGDGLYLNGQRILLKGVNRHSFWPETGRALSKKISY
                     DDVKLIKEMNMNAVRMSHYPPDVHFLEACDELGLYVLDELAGWHHSYDTPTGQRLIGQ
                     IIRRDVNHPSILFWDNGNEGGWNTANDDEFAKWDPQKREVLHPWEKFRLVNTDHYEKF
                     DSHTRLSNGPDIYMPTEFLHGLYDGGIGAGMWDYWELIRNSKVGGGGFFWALVDECVK
                     RTDQDGKLDCAGNRGPDGIVGPHREREGSFNTVREIWSPVSVKATFSGNSVVFSLENG
                     FDFINLNRCKFEWKLAAFPGPTDALRRRKVLGAGEIDATSIAPHSSGELSLSLPSWYR
                     KGDVLYLTAIDPGKHEIWTWSWSVGDNRSSTIT"
BASE COUNT          492 a          562 c          425 g          501 t
ORIGIN      
        1 gtaatcgttg aagaacgatt atctccaacg ctccaggacc acgtccaaat ttcgtgctta
       61 cctggatcta tcgctgtcag gtagagcaca tcacccttgc ggtaccatga aggcaacgac
      121 aagctcaact caccgctgct atggggcgcg atgcttgtag cgtcaatctc accggctccc
      181 aggaccttcc gtcttcttaa cgcgtcagtg ggcccaggga acgcagcgag cttccattcg
      241 aacttgcatc gattgaggtt gataaagtcg aacccattct ctaacgagaa cacaactgaa
      301 ttgccactaa aggtcgcttt gacactcaca ggcgaccaga tctcgcgaac cgtattgaaa
      361 ctcccttccc tttcgcgatg tggcccaaca atcccatccg gcccgcgatt ccccgcacag
      421 tccagcttgc cgtcctgatc tgttcgcttc acgcattcat caaccagagc ccagaagaat
      481 ccaccacccc caactttact gttgcggatc aattcccagt agtcccacat cccggcgccg
      541 ataccaccgt catacaaacc gtgcagaaac tcggtcggca tgtagatgtc aggaccattt
      601 gaaagacgcg tgtggctatc aaacttctcg tagtgatccg tgttgacgag tcgaaacttt
      661 tcccacggat gaagcacttc acgtttctgc ggatcccact tggcaaactc atcgtcattc
      721 gcagtattcc agccaccctc atttccgttg tcccaaaaca gaatgctcgg atgattcacg
      781 tcgcgacgaa tgatttgacc aatcaatctt tgaccagtgg gcgtgtcgta cgaatgatgc
      841 caaccagcca actcatccaa aacatacaaa cctagttcgt cgcacgcttc taaaaaatgt
      901 acatctggtg gatagtgcga catccgcacc gcattcatgt tcatttcttt gatcaacttc
      961 acgtcgtcgt agctaatctt cttgctgagt gcgcggccag tctccggcca gaaggagtgt
     1021 cgattcactc ccttcaatag aattcgctgg ccgttgagat agagtccgtc gcctttgcga
     1081 acttcaaacg ttcgaaatcc gaagcgttcg gtttttgagt gaacaggtcg agagttcttt
     1141 acgagagtga gtcttactcg atagagattt ggagtttcag cggtccacaa ctttggccga
     1201 gcgatacttg tctggaggtg tactgtctgt tgcttgtcgg cgttcgacgc gaatgatcta
     1261 ccaactgaaa caccagccgc atcgacgatc tgtgcaacta cctgatctcc aactccctgc
     1321 aaattaacat caactgaaaa actaccatcc gctctcgcat tgatcgccgt ccaatcaata
     1381 aaagattccg gtagaacttc gaggtaaaca ggacgaaaga tgccgccgaa gttccagtag
     1441 tcaccacgac gttcggcatt gttcacactc gcgttcgcag actctttact tacggtgacc
     1501 tcgagcagat ttgcctgacc atagttcaat aagtcggtga tgtcgtattt gaagcgatag
     1561 aaagatcctt cgtgaaccgg acctgctgac ttaccgttaa tccacacttc cgtatctgtc
     1621 atcgagcctt cgaagaccag acgtacgact cgattcttcc atttcaacgg cgcttcaaag
     1681 ttaagcttgt acttgccctg ctcttttgga aacggattct cagcgcgttg gtgatcgcct
     1741 ccgtattgat aggtcccgaa gccttctgtt tcccaatttg aaggcacatg aatcttcgac
     1801 cacttgccac tatttcgacc ttcactgcag aaaaaatccc acaacactgc gtcgtcggtt
     1861 ccagtgccgg acagataacg aacttctgta ttagttgtcg cagtttgcgc attcgctacc
     1921 gagccgaaaa cacacacaac aaggactgtt agtaatctga gactcttcat attggaatca
//
LOCUS       DATCGC010000970         1669 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_18392, whole genome shotgun sequence.
ACCESSION   DATCGC010000970 DATCGC010000000
VERSION     DATCGC010000970.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1669
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18392"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(32..1108)
                     /gene="plsX"
                     /locus_tag="VIJ87_09435"
     CDS             complement(32..1108)
                     /gene="plsX"
                     /locus_tag="VIJ87_09435"
                     /EC_number="2.3.1.274"
                     /inference="COORDINATES: protein motif:HMM:TIGR00182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043811 - phosphate:acyl-[acyl carrier
                     protein] acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HEY5444673.1"
                     /translation="MRSQSKNEARLTGKVVLDGMGSDHAPHAEIDGAMAATRDFGVKV
                     ILVGQPHILEPELRRCGWRGDGDYGVELVEAAEVIAMDDPVATSVRRKKKSSLRVGSK
                     LVIDGKADGFVSAGNTGAAMATAKMVMGTLPGVDRPALAAMIPTKAAKPVLLLDVGAN
                     SECKAHHLAQFAVMGDAYSRAVLGTVKPLVGLMSIGEEEAKGNDLTKEAFPLLKQLSN
                     INFVGNVEGRDVFAGTVDVIVTDGFTGNVMLKLSEGLTEAMLAMLKRELTATAVTKAG
                     AVLAKPAFRSIKKRLDYSEYGGAPLLGVSRIVVIGHGRSNARAIRNAIRSVKEFSENH
                     AGERIEKGLAETRAFQPMVAVSGM"
     gene            complement(1117..1299)
                     /gene="rpmF"
                     /locus_tag="VIJ87_09440"
     CDS             complement(1117..1299)
                     /gene="rpmF"
                     /locus_tag="VIJ87_09440"
                     /inference="COORDINATES: protein motif:HMM:NF013908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HEY5444674.1"
                     /translation="MPNPKRRHSKARTGKRRAHDALRVPQTNLCPNCREPRMPHRVCP
                     KCGHYKGREVVQVEQT"
     gene            complement(1372..>1669)
                     /locus_tag="VIJ87_09445"
     CDS             complement(1372..>1669)
                     /locus_tag="VIJ87_09445"
                     /inference="COORDINATES: protein motif:HMM:NF014657.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF177 domain-containing protein"
                     /protein_id="HEY5444675.1"
                     /translation="SDFSLEYITGSEYEANQTAELTEELMAVSVFDGQTIDIDEIAKE
                     QILLQVPTRSLCKVDCKGFCPTCGADRNAGECGCSGGQIDPRWAALKDLMSGKS"
BASE COUNT          386 a          486 c          375 g          422 t
ORIGIN      
        1 acaaaataaa agccaaacta gtctagagac ttcacattcc agaaaccgcg accatcggct
       61 gaaatgctct cgtctctgct aacccctttt caattcgttc acccgcatga ttctcggaaa
      121 actctttaac acttcgaatc gcattgcgta tcgcacgagc gttggaccgg ccatgaccaa
      181 tgacaacgat gcggctgact cccaacaacg gcgccccccc gtattccgag tagtccaaac
      241 gcttcttgat acttcgaaac gcgggcttcg ccaacacagc acctgctttt gttactgcgg
      301 tagcggttag ctctcgtttg agcatcgcga gcattgcctc ggtcaatcct tctgacagct
      361 tgagcattac gttaccggtg aatccgtcag taacgattac atcaaccgtt cctgcaaaga
      421 cgtcgcgacc ttcaacatta ccaacaaagt taatgttgct gagttgcttc aacaacggaa
      481 acgcttcttt cgtcagatcg tttccttttg cctcttcttc tccgatgctc attaaaccga
      541 ccaaaggctt tactgtgccc aggacggccc gcgaataggc gtcgcccatt acagcgaact
      601 gagcgagatg atgagcttta cattccgagt ttgcgccaac atcgagaagc aatactggct
      661 ttgccgcttt cgtcggaatc atcgcagcca gcgcgggacg atcgacgcca ggtagggtcc
      721 ccatgaccat cttggcggtg gccatcgcgg ctccggtatt tccggcagag acaaaaccgt
      781 cagccttgcc atcaatcaca agcttagagc caactctcaa agaactcttc ttcttgcgtc
      841 ttacggaagt cgcaactgga tcgtccatcg cgattacttc tgcagcttca accagctcaa
      901 ctccataatc gccgtctcca cgccatccgc agcgacgcaa ttctggctcg aggatgtgag
      961 gttgacccac aaggataacc ttcactccga agtcacgagt tgcagccatc gcaccatcga
     1021 tttctgcgtg tggcgcatgg tcgcttccca ttccgtcgag aacgaccttg cccgttaagc
     1081 gggcttcatt cttcgactga cttcgcacag attgttttag gtttgttcta cctgaacaac
     1141 ttcacggcct ttgtagtgac cgcatttggg gcagactcgg tgtggcatgc ggggctcacg
     1201 gcaattggga cacagattgg tttggggaac gcgcaaagca tcgtgcgcgc gacgtttgcc
     1261 cgtacgtgct ttcgaatgtc gtcgctttgg atttggcata attactccgt ttgtttagat
     1321 gttaatggga aatggtcagt gggtagagtt caaactccgt ctaccttcca ctcacgactt
     1381 accactcatc aaatctttca atgcggccca acgaggatcg atctgtcctc ccgagcaacc
     1441 acattcaccc gcattcctat cagcgccgca agtcggacaa aaacctttgc aatctacttt
     1501 gcaaagcgat cgagtcggca cctgtaacaa gatctgttcc ttcgcaatct cgtcaatatc
     1561 gatcgtttgg ccatcgaaga ccgagacggc cattagttct tcagttaact ccgccgtctg
     1621 attcgcctcg tattcactgc cggtaatgta ttccagcgaa aagtcggat
//
LOCUS       DATCGC010000971         3043 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_247468, whole genome shotgun sequence.
ACCESSION   DATCGC010000971 DATCGC010000000
VERSION     DATCGC010000971.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3043
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247468"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..446)
                     /locus_tag="VIJ87_09450"
     CDS             complement(<1..446)
                     /locus_tag="VIJ87_09450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444676.1"
                     /translation="MSTEPETLKSWLPVDAIIEGEQPAIEWMNLGDVEFREPFFNETL
                     VRANAIQKRPTIVTELDALLQLERISDSLEPSGFIFHSSRCGSTLLANACRALSRSIV
                     IAEAPVLDKIASRFFTDAEPGSPKELLYKLFLRAAVSALGQRRRGD"
     gene            complement(539..1597)
                     /locus_tag="VIJ87_09455"
     CDS             complement(539..1597)
                     /locus_tag="VIJ87_09455"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY5444677.1"
                     /translation="MTRNGFGAKRLVVELTNICNLHCSYCLRDEDALYHTPANFFSPE
                     LLDKIEKQAREVMGITAVVFTGGEPTLHPEFGRILEVSKANDLKVSFVTNGWHFEKIW
                     PTLQAHRDSVTHIGFSLDGVTAETHDAWRGAGSFVRLVRAFSLCFASGIPFVVKVGIR
                     RDTIENLEQLALFSARLGASALNFAHIMPTSNEVEDTSALTYAEREFADQEIANLSRI
                     FKMNIGIDVGYHNLDASPPCSALAGVSCNIDYLGRLSLCCNLSGFRGAEGELDIAADL
                     RSEDFATAYTRLNKVASDQLEARRKRLEAVAAQDSVDPYVSSPCLFCLDTFGKLPWRE
                     SYSATPTESRALPVLQGL"
     gene            complement(1603..2457)
                     /locus_tag="VIJ87_09460"
     CDS             complement(1603..2457)
                     /locus_tag="VIJ87_09460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444678.1"
                     /translation="MSVSVRCGVAPPPVPVDLPHFEITNGGTCYTNNETYWVTFDSSL
                     IVFGGGRDSEVNLWVDQPYDIASYKVAQLLSHALSPALRRCNIFEIHSAGVTVPGGKD
                     AIMITGPSGCGKSTLTAQLASRGWGYLSDDILLLHETGQEIEARAFRRFFALTADTMM
                     AVNLPQSMPEKTGGLKERVTPQEHFDKDPIQCAVPRAIIFPSLTGELRSRTNSLTAAE
                     SMRRLLRLCPWASYDKPTSAVHLRVLGTLVNTTTAFELFAGRDILDDSKIAAEVVYGV
                     AGEYAVTR"
     gene            complement(2647..2829)
                     /locus_tag="VIJ87_09465"
     CDS             complement(2647..2829)
                     /locus_tag="VIJ87_09465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444679.1"
                     /translation="MAKQNKFSLHENPQVLTDAPGNADTTQTAKKKFIEPEISMPVDV
                     LEATTFFQAISSGATN"
BASE COUNT          801 a          786 c          780 g          676 t
ORIGIN      
        1 tcatcgccac gccggcgttg gcccagagcg ctaacggcgg ctcgtagaaa aagcttgtag
       61 agtaattcct tcggagaacc tggctcagca tcggtaaaga agcgacttgc aattttgtcc
      121 agcaccggcg cctcagcaat aacaatagaa cggctcaaag ctctgcaagc attcgccaat
      181 aacgtagaac cgcatcgtga cgagtggaag ataaaaccag atggctcaag cgagtcggaa
      241 atcctctcca actgcaacag cgcgtccaac tccgttacga tggttggtcg cttttgtatt
      301 gcgttcgctc taactaacgt ctcattaaaa aaaggctcac ggaattcaac gtctcccaga
      361 ttcatccact cgatagccgg ctgttctccc tcgatgatcg catcgacggg taaccatgac
      421 ttcaatgttt ccggttcggt tgacaatgtt ttaaatgtgc tgaagggaga tgcggcaaac
      481 ggtttcacga gcggggatgt tacggcaggt gtatccggtc aaatgaacaa ctctggagct
      541 ataacccctg gagcaccggc aaggcgcggg attcagtcgg cgtagccgaa tacgattcgc
      601 gccacggtag cttgccaaac gtgtcgagac aaaacaggca gggtgaactg acataagggt
      661 cgacagaatc ctgagccgct actgcttcaa gacgtttacg tcgtgcttcc aattgatctg
      721 acgctacttt gttaaggcgc gtatacgctg tggcaaagtc ttcggatctc aaatcggcgg
      781 cgatatccaa ctcaccttcg gccccgcgga aaccagagag attgcagcac aaagagagac
      841 gaccaagata gtcgatgtta cagctaacac cagccagcgc tgagcagggc ggcgacgcat
      901 cgagattgtg ataaccgaca tcgatgccga tgttcatctt aaagatgcgc gaaaggttcg
      961 cgatttcctg atctgcaaac tcgcgttctg catacgtcaa cgccgacgta tcttcaactt
     1021 cattcgacgt tggcattatg tgcgcaaagt tcaatgccga ggccccgagg cgagctgaga
     1081 aaagcgctag ctgttccagg ttttcaatcg tgtcgcgcct aataccgact ttgacgacaa
     1141 acggaatccc gcttgcaaaa cagagcgaga aagcgcgtac aagtctcacg aacgaacccg
     1201 cacctcgcca ggcgtcgtga gtctccgcag tgacaccatc caaactaaaa ccgatatgag
     1261 taactgaatc gcgatgtgct tgtagcgtgg gccaaatctt ctcgaagtgc caaccattgg
     1321 ttacaaagct aaccttgaga tcgttagctt tcgaaacttc gagaatccga ccgaactcag
     1381 gatggagtgt tggttctcca ccggtaaaga cgacagcagt gatgcccatt acttcacgcg
     1441 cctgcttttc gatcttgtct aatagctcag gcgagaaaaa gtttgcaggg gtatggtaga
     1501 gagcatcctc gtcacgaagg caataactgc agtggagatt gcagatattc gtgagttcga
     1561 cgactagtct cttggcacca aaaccgttac gtgtcataag cctcaacgcg tcaccgcgta
     1621 ttcaccagca acgccataga ctacttcagc agcaatcttc gaatcatcaa gaatgtctcg
     1681 gcccgcaaaa agctcaaacg cggtcgtcgt attcaccagt gttcccaata cccgaagatg
     1741 cacagcggac gtgggcttgt cgtaagaggc ccacggacac aatcgcaaga gacgacgcat
     1801 cgactcggcg gcggtcagcg aattagttct gcttcgcagt tcgccagtaa ggcttggaaa
     1861 gataatcgct cgcggaaccg cacactgaat tggatccttg tcgaagtgct cctggggtgt
     1921 aacccgttcc ttcaagcctc ccgttttttc cggcatggat tgaggcagat taaccgccat
     1981 catggtatcg gctgtgagcg cgaagaaacg tcgaaacgct cgggcttcga tttcttggcc
     2041 cgtctcatga agcaggagaa tatcatctga aaggtaaccc cagccacggc tggcaagctg
     2101 cgcggtcaat gtcgactttc cacaaccaga aggtccggta atcatgattg catctttgcc
     2161 gcctggtaca gtaactccag cgctgtggat ttcaaaaatg ttgcagcgtc gcagcgcagg
     2221 agacagggcg tgtgaaagaa gctgggccac cttataagag gcgatgtcat aaggctgatc
     2281 tacccagaga ttaacctcag aatcccgacc cccgccaaac acaatcaaag aactgtcaaa
     2341 cgtgacccaa taagtctcgt tgttggtgta acacgttccg ccattggtta tttcaaagtg
     2401 cggtaagtca accggcactg gcggtggggc gacaccgcac cgaacagata cgctcatggc
     2461 aggggacact tgtgtctgac ttggtagagc agtgaggaac cagccagcta aaagtcgcga
     2521 gaccgcagtc gtggaccagt cgtcataggt attgataaga acagttcgac cggcaactga
     2581 gtaaaacaac ttagttgccg gtcgtatagg caagtcacaa ctccaaaaac gacttgaccc
     2641 gtaatttcag tttgtggcac cgctggaaat ggcctggaag aaagtcgtag cttcaaggac
     2701 atcaacgggc attgaaatct cgggctcgat aaacttcttt ttcgccgtct gtgttgtatc
     2761 cgcgttgccg ggtgcgtccg ttagaacctg tggattctcg tgcaacgaaa atttgttttg
     2821 tttagccaag tgtgccgcct cctagaatgg ttagaagtca tattatgtct tgaccgataa
     2881 acatggcaac aaaaatttaa accatgacat ggtcaagagt tccgtcgtta cgagccctgt
     2941 tgtggcgatt tggctggatc agccaagacc agacgcagtg cccgcctctc cgcgtgaagc
     3001 aaatcagcgc gaaggaaaag tcgaatattc ggggataact tcc
//
LOCUS       DATCGC010000972         1368 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_280366, whole genome shotgun sequence.
ACCESSION   DATCGC010000972 DATCGC010000000
VERSION     DATCGC010000972.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1368)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1368)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1368
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280366"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..377
                     /locus_tag="VIJ87_09470"
     CDS             <1..377
                     /locus_tag="VIJ87_09470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444680.1"
                     /translation="SETVKEFLKKYPDDNRGLLTSLEAVLAASDGQESVAEDKIKVAI
                     DKGKGFGHFHHTAYFIACAYALMKKPDQAIKWLEQAADEGFPCYPLFERDLNLSNLRQ
                     DERFITLLTKLKQQWESYKALS"
     gene            complement(490..>1368)
                     /locus_tag="VIJ87_09475"
     CDS             complement(490..>1368)
                     /locus_tag="VIJ87_09475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444681.1"
                     /translation="RFISSANPPQSAITDEFYPLPGGGFLVTMMGGAEGHHPGRVVEF
                     DKNLQLVAENPEQPPMEGFNPHGISVRPELNLMVTSDFICPSTTLDVVPGGLDLRGSV
                     RVWNFKQRKILRTVNIQNAVGTIDVKLIPGDERARAYTAGMIDDHLYLIDTVRGTAQA
                     VFDFSTIAPGGWPQLMRMTSDGKRLFVSMNTAGKVVMFDTSRPSRPRVLKVLDLGANS
                     GPHYIALTDDERRLVISDYFLNEDSFGKVHAEGDHHVHVARVTSRDLILDPRFNLDFN
                     TAFTTGPARPHGLAFK"
BASE COUNT          354 a          334 c          365 g          315 t
ORIGIN      
        1 catcagagac tgtaaaagaa ttcctgaaaa aatatcctga cgataaccgt ggtctactta
       61 ccagccttga ggcagtcctg gccgcctcag acgggcaaga aagcgttgcc gaagacaaaa
      121 tcaaggtagc gatagataag ggcaaaggct ttggacactt tcatcacaca gcttatttca
      181 ttgcctgtgc ttatgcgttg atgaagaaac cggaccaggc aatcaaatgg ctggagcaag
      241 cagctgacga aggcttcccg tgttatccat tgttcgagcg ggatcttaat ttgagcaact
      301 tacgacaaga cgaacgtttc attacgttgt tgacgaagtt gaaacaacag tgggagtcat
      361 acaaggcgct ttcgtgaagc ttttcagcat ctttggagtg cagtgacccg tcaccgcttt
      421 ggcttccaag gcaaccgaag aaacaggcgc cgttagaaag cgctgacagg tcagcgcact
      481 ccaaaagact tacttgaaag cgaggccgtg tggtcgggcc gggccagttg tgaatgcggt
      541 gttgaagtcg aggttaaacc gcgggtcaag gattaaatcc ctacttgtta ctcgcgcgac
      601 gtgaacatga tggtcaccct cagcgtgaac ttttccgaag gagtcctcat ttagaaagta
      661 gtcagagata accagtcgac gctcatcgtc ggtgagagcg atgtaatgcg gtccagagtt
      721 agcaccgaga tcgagcacct tgagcactct tggtcgggat ggacgtgaag tgtcgaacat
      781 gacaaccttg ccagcagtat tcatcgaaac aaacaaccgt tttccgtcgc ttgtcatgcg
      841 catcaactgt ggccaccctc ccggggcaat agttgaaaaa tcaaaaactg cttgggctgt
      901 tccacggacc gtatcaatca agtagaggtg atcgtcgatc atcccagcgg tgtaagcgcg
      961 tgctctttcg tcaccgggga tcagcttcac atcaattgtt cccacagcgt tttgaatatt
     1021 gaccgtgcgc aggatctttc gttgtttgaa attccagaca cgaacactgc cacgcaggtc
     1081 taacccacca ggcacgacgt ccaacgttgt gctcggacaa atgaagtcgc tggtgaccat
     1141 aaggttgagt tcaggacgaa ccgagatgcc gtgaggattg aagccttcca tcggaggttg
     1201 ttctggattc tccgcgacga gttgtaaatt cttgtcgaac tcaaccaccc ggcccgggtg
     1261 atgtccttca gcgccgccca tcatcgtcac gaggaagcca ccgccgggaa gcgggtagaa
     1321 ttcatcggtt atcgctgatt gaggtggatt ggctgaggaa atgaatcg
//
LOCUS       DATCGC010000973         1330 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_247497, whole genome shotgun sequence.
ACCESSION   DATCGC010000973 DATCGC010000000
VERSION     DATCGC010000973.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1330)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1330)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1330
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247497"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..817
                     /locus_tag="VIJ87_09480"
     CDS             <1..817
                     /locus_tag="VIJ87_09480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444682.1"
                     /translation="QMSVRTDQLPEGTNNVVETPQTKNQMGEKTNVSFGVNPEGTEEI
                     RVNTGVIETTNHAGDKTSIHGGEYVSVNNSGRLSAPQRLLDVPQPSEPHDLEKVLAGG
                     NGSASVGLKWQRPQSGAAAYYRVEVATSPFFVADGKVIERDQLAATELGASDLRPGVY
                     FWRVRATASSGQVSDWSEPQKFIVATRGTGSQVAVSNLAAEFLGGNIFLIRGKAEAGT
                     TIHAGGRETIVPSDGNFQLQITASSATREVVVEAQDSQGNSSQYKVSLGTRRG"
     gene            842..>1330
                     /locus_tag="VIJ87_09485"
     CDS             842..>1330
                     /locus_tag="VIJ87_09485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444683.1"
                     /translation="MSSHVILLTDAHEAPAYELIEALRAAGVKTLIEGLREVEVEAAI
                     TRKRKSEGTAVDPGPPPLAVLYEVVPGADMVELGTAIDHARAFWPGAPLVACRRHSNG
                     YQTLNLRSLDGATLKRLGFRAIADKAAQLPALLREIEGHGATGELRLPEIVQKPSESG
                     SLS"
BASE COUNT          346 a          332 c          369 g          283 t
ORIGIN      
        1 acagatgtca gttcgcaccg atcaattgcc cgaaggaacc aacaacgtag tcgaaacacc
       61 ccagaccaaa aaccagatgg gtgagaagac gaacgtgagc tttggtgtaa atccggaagg
      121 cacggaggag attcgggtca acaccggcgt gatcgaaaca acaaaccacg cgggcgacaa
      181 aacgtctatt cacggcggtg agtatgtctc agtaaacaat tcgggaaggc tatctgcgcc
      241 gcaaagactt ctcgacgttc cccagccttc ggaaccacac gatcttgaaa aagttcttgc
      301 aggcggcaac ggttcggcaa gtgtgggttt gaaatggcag cgcccacagt ctggtgcagc
      361 tgcttactat agggttgagg ttgcaacttc accgttcttt gttgctgatg ggaaggtgat
      421 cgaacgcgat cagctggcag ccactgaact cggtgcgagt gacctgaggc caggcgttta
      481 cttctggcgt gttcgtgcta ctgcctcgag cggacaagtt agtgactgga gtgaaccgca
      541 gaaattcatt gtggcaactc gaggaaccgg ctcacaggta gcagtttcaa atcttgcggc
      601 ggagtttctc ggcgggaaca ttttcttaat tcgcggaaaa gcagaagcag gcacaacaat
      661 ccatgccggt ggccgtgaaa caatcgtacc cagtgatggc aacttccaac tacaaatcac
      721 agcttcatcc gcaacccgtg aagtagttgt cgaagcacaa gactcccagg ggaacagcag
      781 ccaatacaaa gtttcacttg gcacacgcag aggttgaaac cttaaagaga cacgacgaac
      841 aatgtcgagc cacgtaattt tactgacaga tgctcatgaa gcgcccgcct acgagttaat
      901 tgaggcgttg cgcgctgccg gcgtgaaaac gctgatagaa ggtctgcgtg aagttgaggt
      961 tgaagctgcg atcacgcgta agcgtaaatc agaaggaacc gcagttgacc ctgggccgcc
     1021 gccacttgca gttctttatg aagttgttcc tggagcggat atggtcgagt tgggcacggc
     1081 aatcgaccat gcgcgtgcgt tctggcccgg tgcgccgtta gtagcatgtc gtcgccattc
     1141 gaatggctat caaactctca atttgagaag tcttgacggc gctaccttga agcggcttgg
     1201 atttagagca atcgctgata aagcagccca attacccgcc ttgctgcgtg aaattgaggg
     1261 gcacggagcc accggcgaac tacgtcttcc tgagattgtt caaaaacctt cagagtccgg
     1321 atcattgtcg
//
LOCUS       DATCGC010000974         1556 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_345831, whole genome shotgun sequence.
ACCESSION   DATCGC010000974 DATCGC010000000
VERSION     DATCGC010000974.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1556)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1556
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_345831"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1122
                     /locus_tag="VIJ87_09490"
     CDS             <1..1122
                     /locus_tag="VIJ87_09490"
                     /inference="COORDINATES: protein motif:HMM:NF012951.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase family protein"
                     /protein_id="HEY5444684.1"
                     /translation="EREQHYTIRFRAPDNLSGRVEFVDLIRGRIEHQDNVNDIVLLKG
                     SDQSPRLPTYHFAHVVDDTLMRVNVVLRGEEWINSVPVHLQLFNALGFQPIPYAHIAP
                     LMKFDGASRRKLSKRKDNEADVAYYIDSGYPAGAVLHYLRGLANSRFAEMTFEESASA
                     ALSLSDCGVAGPIFDLVKLESISREFIAQLPIEEALESLLTWARENDPELSTVLSNNL
                     PQVRRIFAAERQPAVQRKDLAKWNEFRAAYGLYFQELFPPVRNPADPRFAPVEPDMVV
                     KLAKGFADSYRHEENKEAWFEQIRSLASDNGFAPTAGQYKKNPENFAGTISHVSNAIR
                     IALTGLTTSPDLFLVAQNLGEEEVLKRVRALTDDPSGHA"
     gene            1302..>1556
                     /locus_tag="VIJ87_09495"
     CDS             1302..>1556
                     /locus_tag="VIJ87_09495"
                     /inference="COORDINATES: protein motif:HMM:NF024759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GxxExxY protein"
                     /protein_id="HEY5444685.1"
                     /translation="MKELIFKEEVYAIVGAAMEVYWELGRGFLEPVYQEALEIEFRLR
                     RIPCEPQEDIFIYYKGEALKKKYVPDFICYQQIIIELKALD"
BASE COUNT          399 a          369 c          413 g          375 t
ORIGIN      
        1 gagagggagc agcattatac gattcggttt cgtgcacctg ataatttatc cgggcgcgtg
       61 gagttcgttg atctgatccg aggtcgaatc gaacatcagg acaatgtgaa tgacatcgtg
      121 ttgttaaagg gtagcgatca atctccgaga cttcctacct accactttgc tcacgtggtt
      181 gacgacacgt tgatgagagt caacgtagtg ctgcgaggtg aagagtggat caattcagtg
      241 ccagtgcatc tgcaactatt caacgcactt ggtttccaac caataccgta cgcccatatc
      301 gctccgctga tgaaattcga cggagcgagc cggcgcaagt tgagcaagcg aaaagataat
      361 gaggctgacg tcgcgtacta catcgattcg ggctatccag caggcgcggt gcttcattac
      421 ttaagagggc tggccaacag caggtttgcg gaaatgacgt ttgaggagtc ggcgtcggct
      481 gctttgagtt taagtgactg cggcgtcgcc ggtccgatct tcgatctggt gaaacttgaa
      541 tcgatcagcc gggagtttat agcgcaactt cccatcgaag aagcgctgga gagtttgctt
      601 acctgggcac gcgagaatga ccctgagttg agcacggtac tctctaataa cttgccgcag
      661 gttcgccgca tttttgccgc agagcgacag cctgcggtgc agcgaaagga tctcgcgaaa
      721 tggaatgaat tccgcgcagc gtatggtttg tacttccagg agttgtttcc accagtaagg
      781 aatcctgcag atcctcgctt cgctcccgtc gaaccggaca tggtagtcaa attagctaaa
      841 ggcttcgctg attcatatcg gcatgaggaa aacaaagagg cttggttcga acagatccga
      901 agcttggcct ccgacaacgg cttcgcacca acagcggggc aatacaagaa gaatccggag
      961 aatttcgccg gtacgattag tcatgtgagc aacgccatta ggatcgccct gaccggactc
     1021 acaactagtc cggacctttt cctggtagcc caaaacctcg gcgaggaaga ggtactaaaa
     1081 cgtgtcagag ccctcacgga tgatccgtct ggccacgcat agcctgtttt agcgtttcct
     1141 atttcgtgtt atttcgtgtg gcttcgtgga tctttttttc tcggcataga cgatccacga
     1201 attcacacga aataacacga ataagccgaa caagttcttg tggaccgcgc gaagccggcc
     1261 tacaatgaaa tcgctcaaac tcaaaccgag gtcctcacaa catgaaagaa ttaatcttca
     1321 aggaagaagt ctacgcgatc gtgggtgccg caatggaagt ctactgggag ttaggtaggg
     1381 gcttcttgga gcctgtctac caggaggcac tagagattga attccggctc cgtagaattc
     1441 catgcgaacc gcaggaagat attttcattt actataaggg tgaagcattg aagaagaagt
     1501 atgtccccga ttttatctgt tatcaacaga ttatcattga gttgaaagca cttgat
//
LOCUS       DATCGC010000975         1041 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_345857, whole genome shotgun sequence.
ACCESSION   DATCGC010000975 DATCGC010000000
VERSION     DATCGC010000975.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1041)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1041)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1041
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_345857"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            347..589
                     /locus_tag="VIJ87_09500"
     CDS             347..589
                     /locus_tag="VIJ87_09500"
                     /inference="COORDINATES: protein motif:HMM:NF024858.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
                     /protein_id="HEY5444686.1"
                     /translation="MKSSVIRHSVVFNGHKTSVSLEDEFWNSLKEIAHAHGVTTSKLI
                     AEIDNARQHDNLSSAVRLFVLGQVRRTLGLDVPLGN"
BASE COUNT          241 a          266 c          273 g          261 t
ORIGIN      
        1 attctcgatc tgaggggagt gtttcggaat tgcttgctct atcaaattac tgattgcttt
       61 ctccacatct gacgtctcat gaagcggaga catcacagag tgattgtcgg atgccgaaga
      121 tgttgaatcg tccatcaacc tctcccgtgg atttcgttta tcgctagcct aaccgaacaa
      181 tatttgttgt cgggttaacg actggcggcg agcaggtgtt gtcacaccac cagctttcct
      241 ccgataccgc aacggaggat gatttttttg aaacggtact tctttgatga cctcgccaca
      301 ccgaatcgcc agatgatacc tgcgagcatt ttttgggaag acgttcatga aatcctcggt
      361 gatcagacac tctgtcgtct ttaacggaca caagacgagc gtcagcctcg aggatgaatt
      421 ctggaatagc ctgaaagaaa tcgcacatgc gcacggagtg acaacgtcga agttgatcgc
      481 ggagatcgac aatgcgcgcc agcacgacaa cctttcttca gcggtccgat tgttcgtatt
      541 gggtcaagtc cggcggacgc tcggactgga tgtgcccttg ggtaactaag cgtattgcgc
      601 tacctgcacc atggtttggg agtaggcgga catcttgttt gtccgcacac aaaaggcacg
      661 gccagatttt catgaatcaa gattaggcca acgtcttgcc cattggcttt gagcgtgccg
      721 caacgtcgcc cgtaattaca gtatggcgtt ctttcttttc ctgcgggaca cgcgcaaggg
      781 acaaattcga agtcaagctt gcttgatttc acaagattgc gaagccggcg ggtagccttg
      841 ccacctaact cgcgctccgc tttgcagagt gctcggcgag tttcaggtgc attgaagccg
      901 accaaacgaa cgtccggctt ctggtgatgg agtcgaattg tatcgccgtc tattacgcgc
      961 acctcatcag gtgttatcgg ggcagacgaa acggcaccga cagacagcgc aacagcgcgg
     1021 tgaccattct gtcaatcatt g
//
LOCUS       DATCGC010000976         2621 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_212956, whole genome shotgun sequence.
ACCESSION   DATCGC010000976 DATCGC010000000
VERSION     DATCGC010000976.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2621)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2621)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2621
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212956"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            62..1813
                     /locus_tag="VIJ87_09505"
     CDS             62..1813
                     /locus_tag="VIJ87_09505"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SpoIIE family protein phosphatase"
                     /protein_id="HEY5444687.1"
                     /translation="MSELIVKYPDRAPDHFPLGRLRITIGRSARNDLCIPDPFASRVH
                     AEVRREGDEYVLQDLGSANGTLYNGATVQGVIPLTAGGRIQIGETEIIFDDGTYNSSM
                     GATMITDNSDASLPEATIALASGDRTTSGLLEAIEGARTKPEEIAIVSGAAATATATK
                     KHGDLLALISKVGITLLASATLNETLEQIVALVFEAVPADRCLIMMRDEGSTEDLRVA
                     VARLRDRAGEVGEIRVSRNVLDEVVIRGKSVLTSDAQHDPRFASGTVVLQGVRSVLAV
                     PLGVADKVFGIIYADSPIAEGRFTEDHLKVLTTLASVAAIRVENTRLMEERMERERLE
                     RELALASEIQQRFQPTAPPVVLGYELQGISFPCYEIGGDYYDFIERDDGRLVIALGDV
                     SGKGTAAALLMSSLHAAVHAQSGSHDTLVDTISAVNRYLADNIPANRFVTLFYAELDP
                     ESGALSFLNAGHNPPLIIHSAGTVEQLASGGLPLGIKRDADYREGRTQLLHGDVLVIY
                     SDGVTEAMSPSGEEFGPTRLYEVVSRNIEASAAGIRDRIESSLTKFSQGTSAADDITL
                     VIVKRQAEVRLSASAGD"
     gene            complement(1810..2181)
                     /locus_tag="VIJ87_09510"
     CDS             complement(1810..2181)
                     /locus_tag="VIJ87_09510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444688.1"
                     /translation="MHKATFLLLILLIATPTYAQSTAASQTFTSFWKTFKAAIARNDK
                     QAVADVTKLPFLFDSKEQDRAGFIKIYNQLFTKKMRRCIATAKPEKEGERYDVFCGDL
                     IFYFGKDSDGKYKFLEFGVND"
     gene            complement(2206..>2621)
                     /locus_tag="VIJ87_09515"
     CDS             complement(2206..>2621)
                     /locus_tag="VIJ87_09515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444689.1"
                     /translation="DHLTLKRVHIIFGLLLFVVFLLTGQYMDKIHNHLRGMADGPRML
                     YRSRHIYILLSAMLHLGVGSYFSYHPQTARRTMQLIGSLFITIASALFVYAFFYEPNL
                     SGLYTPVSRNGIFLTAIGTLLHLLSGVGMGSEKRL"
BASE COUNT          625 a          650 c          709 g          637 t
ORIGIN      
        1 ggcaccgtag tagttcgcga aggttcgtag taattttgcc cagaccgttt gtcctttcga
       61 aatgtcagaa ctgatagtca aataccccga ccgtgctccc gaccatttcc cactgggtcg
      121 cttacgcata acgattggtc gttccgccag aaacgatctc tgtatccctg atccttttgc
      181 ttcgcgagtc cacgccgaag taagacgaga aggtgatgag tacgtgctac aggatctcgg
      241 ttccgctaac ggtacgcttt acaacggcgc tacggttcag ggcgtgattc ctctaactgc
      301 cggtggccgc atacaaatcg gcgaaacgga aatcattttt gacgacggca cctacaactc
      361 aagtatgggt gccacaatga tcaccgacaa ttcggacgct tcgttgcccg aggcgacgat
      421 tgcgctggct tccggtgatc gaacgacttc aggccttctc gaagcgatcg aaggggcgcg
      481 gaccaaaccc gaagaaatcg caatcgtttc cggcgcggca gcaactgcga cggcaaccaa
      541 aaagcacggt gatctattag cgttgatcag caaagtggga atcactttgc tggcatcagc
      601 aacactcaac gaaactctcg aacagatcgt cgcgctcgta tttgaagctg tccctgccga
      661 tcgttgtctc atcatgatgc gcgatgaagg cagcactgaa gacttgcgtg tggcagttgc
      721 gcgcttgcga gacagggcag gtgaggttgg tgagattcgc gtcagtcgca atgtgctcga
      781 tgaggtagtg attcgcggta agtcagtatt gacctcagac gcgcagcatg atcctcgttt
      841 tgcgagtggc acagttgtac ttcagggtgt gcgatcggtg ctggcggtac cgctgggcgt
      901 tgccgacaaa gtatttggaa tcatctacgc cgactcgcca atagccgagg gacgtttcac
      961 cgaagatcac ttgaaggttt tgactacact tgcttcagtc gccgccatac gagttgaaaa
     1021 tacgcgacta atggaagagc gcatggaacg agagcgactc gagcgtgaac tcgcgctagc
     1081 cagcgaaata caacagcgct ttcagccgac cgcgcctcca gttgtccttg gttatgaact
     1141 ccagggcatc agcttcccat gttacgaaat cggtggtgat tactacgact ttattgaacg
     1201 agatgatgga cgtttggtaa tcgccctggg cgacgtgtcg ggtaagggga ctgccgcggc
     1261 actgctgatg tcatcacttc acgcggcggt gcatgcacag tcaggttctc acgacacact
     1321 ggtcgacact atctctgctg taaacagata cctggcagac aatattcctg cgaatcggtt
     1381 tgtgacgctt ttctatgccg aacttgatcc cgaatctggc gcgttatcgt tcctgaatgc
     1441 tggccataat ccgcctttga tcattcactc agccggtacc gtggaacaac tcgcgtcggg
     1501 cggtttgccg ctgggtatca agcgcgacgc agattatcgc gaaggccgaa ctcaattact
     1561 gcacggcgat gtactcgtta tctattcaga tggtgtgacg gaagctatga gtccgtctgg
     1621 cgaagagttt ggtccaacgc gactttatga agttgtttcg agaaacatcg aagcctcggc
     1681 cgccggaata cgtgaccgca ttgaatcgtc gttgacaaag ttttcccagg gaacaagtgc
     1741 tgccgacgat atcacgctag ttattgtgaa gcgtcaagcg gaggtacgtc tctcagccag
     1801 cgccggcgac taatcattca cgccaaactc aagaaacttg tatttaccat ccgagtcttt
     1861 tccgaagtag aagattaaat ccccacaaaa aacgtcgtag cgttcacctt ccttttcggg
     1921 cttagccgtg gcgatgcacc gtcgcatctt tttggtgaat agctgattgt agatcttgat
     1981 aaagcctgct cggtcttgtt ccttgctgtc gaacaggaac ggaagtttgg ttacgtcagc
     2041 caccgcctgt ttgtcgttgc gggcaattgc ggctttgaac gttttccaaa aagacgtgaa
     2101 ggtttgcgat gccgcggtcg attgggcgta agttggcgtg gcgattaaga gtatcagtag
     2161 aagaaatgta gctttgtgca tgtggtgttt gccggttctg tgtatctata aacgtttctc
     2221 ggagcccatt cctacaccgc ttagcaggtg aagcagtgtc cctatcgcag tcaggaagat
     2281 cccgttacgc gatactggtg tatacaaacc gctaagattc ggttcgtaga agaatgcata
     2341 aacaaaaagt gcggatgcta tggtgataaa caacgagccg atcaactgca tcgttcgcct
     2401 ggctgtctgc ggatggtagc tgaaatagct gccgaccccg agatgaagca tcgcggaaag
     2461 taaaatgtat atgtgccgag aacgatagag catgcgcgga ccatcggcca tcccccggag
     2521 gtggttatgg attttgtcca tgtactgccc ggttaagaga aatactacga acagcaacag
     2581 accgaagatt atatggactc gtttcaaggt taaatggtca g
//
LOCUS       DATCGC010000977         1126 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_280518, whole genome shotgun sequence.
ACCESSION   DATCGC010000977 DATCGC010000000
VERSION     DATCGC010000977.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1126)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1126
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280518"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..770)
                     /locus_tag="VIJ87_09520"
     CDS             complement(<1..770)
                     /locus_tag="VIJ87_09520"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY5444690.1"
                     /translation="MGKPVVASYCTTFLKPEMLHIYRQVRSLHGYETFVMTKALQNSE
                     RFPFPDIELIPKPPTNPFRHGWLKWVKRTPPIIYRGEYKMLSNLLERRGADLMHIYFG
                     HTGVHLLPFIEQWHKPCVVSFHGADVAEKKDIPHYAPKLRSLFDAVPLVLARSRSLAE
                     RLLNLGCPPERLRINRTGLPLDEFPFVRRQVPSEGRWRFMQACRLIPKKGVATSLCAF
                     AIFQKDFPNSELVIAGKGPLQAHLEELTEELGIASKVR"
     gene            complement(814..>1126)
                     /locus_tag="VIJ87_09525"
     CDS             complement(814..>1126)
                     /locus_tag="VIJ87_09525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444691.1"
                     /translation="SGSEGRHPIEDLQNLRREIDLYDPRLSERPWYIIANKMDLPNAS
                     ENLRMLQERFPDREIIAISAHRSEGIDELQLHLDRWLQMKRKEAAGTKKAQTTGALTS
                     E"
BASE COUNT          264 a          268 c          313 g          281 t
ORIGIN      
        1 aaacggactt tggaagcaat accaagctcc tctgttagtt cttcgagatg agcttggagg
       61 gggcctttcc cggcaataac taactccgag ttcggaaaat ccttctggaa aattgcgaag
      121 gcgcaaagcg aagtggccac tcctttcttc ggaatgaggc ggcacgcctg catgaatctc
      181 catcggccct cgctcggaac ttggcgacga acaaagggga attcatccag agggagaccg
      241 gttcgattaa tccgcagacg ttctggtggg caaccgaggt tcaatagtcg ctcagcaaga
      301 gatcgggaac gagccaaaac gagcgggacc gcgtcgaaga gactgcgcaa tttgggggcg
      361 taatggggga tatctttctt ttccgcgaca tccgcaccgt gaaaggaaac gacacacggt
      421 ttgtgccatt gctcgatgaa aggaaggaga tgcacaccgg tatgtccgaa atagatatgc
      481 attagatctg caccgcgacg ctcgaggagg ttcgaaagca tcttgtactc accgcgatag
      541 ataatcggag gagttcgttt cacccattta agccagccat ggcgaaatgg attagtcggt
      601 ggtttcggga ttaactcaat atcgggaaag ggaaagcgtt cgctgttttg cagcgccttc
      661 gtcatgacga aggtctcgta tccatggagt gatcggacct gacggtagat gtgcaacatc
      721 tccggtttca ggaacgttgt gcagtagctt gctacaactg gtttacccat gaaagacgcg
      781 attgtccatg aggtcttggt tgttgtccaa ctgttattcg gaagttaagg ccccggtggt
      841 ttgagctttc tttgtacctg ccgcttcttt tcttttcatc tgcagccatc ggtcaagatg
      901 taactgtaat tcatcaatac cctccgaccg atgggcggaa atggcaatga tctctcggtc
      961 gggaaatcgt tcctggagca ttcgcaggtt ttccgaggcg ttaggtagat ccatcttgtt
     1021 cgcgattatg taccagggcc gttctgatag ccgcggatca tagagatcga tctcgcgccg
     1081 taagttttgc aggtcttcga tcggatgccg cccttcgctt ccggaa
//
LOCUS       DATCGC010000978         1466 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_181246, whole genome shotgun sequence.
ACCESSION   DATCGC010000978 DATCGC010000000
VERSION     DATCGC010000978.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1466)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1466)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1466
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181246"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..773)
                     /gene="glyA"
                     /locus_tag="VIJ87_09530"
     CDS             complement(<1..773)
                     /gene="glyA"
                     /locus_tag="VIJ87_09530"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016291634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0070905 - serine binding [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HEY5444692.1"
                     /translation="MSDSRNASLSEVDPLIANAIDHEVARQANGLELIASENFVSEAV
                     LEAAGSVFTNKYAEGYPGKRYYGGCEWTDVVEQTAIDRAKELFGADHANVQPHSGAQA
                     NMTVYLAAIQYGDQILGMNLSHGGHLTHGHPMNFSGLSYKVADYGVSKETEQIDYDEL
                     QRIAEEHRPKLLVCGASAYPRIIDFKRIGEIAASIGARVFADIAHIAGPVAAGLHPSP
                     VPHADYVTTTTHKTLRGPRGGLILCKEEHAKEIDRKLFPG"
     gene            complement(805..1260)
                     /gene="rpiB"
                     /locus_tag="VIJ87_09535"
     CDS             complement(805..1260)
                     /gene="rpiB"
                     /locus_tag="VIJ87_09535"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: protein motif:HMM:NF004051.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009052 - pentose-phosphate shunt,
                     non-oxidative branch [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HEY5444693.1"
                     /translation="MKIAIASDHAGFSEKEKLKPLLTELGIGFEDLGTLSESSVDYPD
                     FAQKVAEQVAQGSVDQGVLVCGSGTGMAITANKVPGVRAAVAWSEETARLARQHNDAN
                     VLAIGARTTPQGEIPKIVRAWFDAAFQGGRHAERVKKISAIEQSKAPAK"
BASE COUNT          340 a          381 c          363 g          382 t
ORIGIN      
        1 ccgggaaata gttttcgatc gatctctttc gcatgttctt ctttgcagag aatcaaacca
       61 ccgcgtggac ctcgtaaagt tttgtgcgtc gtagtcgtca cgtagtcggc atgcggaact
      121 ggtgaaggat gaagtcctgc agcgacagga cctgcgatgt gggcgatgtc ggcaaacacg
      181 cgagccccaa tgctcgcggc aatttctccg attcgtttga agtcaattat gcgcggatag
      241 gcagaagcac cgcacaccag taacttggga cgatgctcct ctgcaattct ctgcaactca
      301 tcgtagtcga tctgttccgt ctctttggaa acaccatagt cagcgacttt gtaactcaga
      361 cccgaaaagt tcatcggatg cccgtgagtt aaatgaccac cgtgcgacag gttcattccg
      421 agtatctgat cgccatactg aatcgctgcc aggtacacag tcatgtttgc ctgtgcgcca
      481 ctgtggggct gaacattcgc atggtccgcg ccaaatagtt ccttagcgcg atcgatggct
      541 gtttgctcaa caacatctgt ccattcgcaa ccgccgtagt agcgtttgcc cggataaccc
      601 tcggcgtact tatttgtaaa caccgagccg gcggcctcta gcacggcttc acttacaaag
      661 ttctcggaag caataagttc aagtccattt gcctgacgag caacttcatg atcgatggcg
      721 tttgctatta gcggatcaac ttcagagagt gacgcgttgc gggaatcaga catgggaata
      781 ttggcctttg gtttttagtt tagtttattt ggctggcgct ttggattgct caattgcgct
      841 gatctttttt acgcgctcag catggcgccc accctggaag gcggcgtcga accaagcgcg
      901 gacgatcttt ggaatctcac cttgaggcgt cgtgcgcgct ccgatagcca acacattggc
      961 atcattatgc tggcgggcaa gtctcgcagt ttcttccgac catgctactg cggcgcgaac
     1021 accaggtact ttgttagcgg taatcgccat cccggtccca gatccacaaa caagtacacc
     1081 ctgatcgaca cttccttgtg cgacctgttc agcgaccttt tgcgcaaagt caggatagtc
     1141 aaccgatgac tctgacagcg ttcccaagtc ttcaaaaccg attccgagct cagttaacaa
     1201 gggtttgagc ttctccttct cggagaagcc tgcatggtcg ctcgcgatag cgattttcat
     1261 gtcgccgtgt acctttaaga attaatcaga agtaatgtga tggtacatca cgctgttaga
     1321 gcccgcaaac gacaacgaga tcaaccatag atcgaaacac aaatcacgtg atctaaggtg
     1381 attgagagct caaaagttct gatctatttc atccgcctta tccgtgtccg atgaagattt
     1441 gcgtaagttg ttgttgctgg gtgaga
//
LOCUS       DATCGC010000979         1025 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_412320, whole genome shotgun sequence.
ACCESSION   DATCGC010000979 DATCGC010000000
VERSION     DATCGC010000979.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1025
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_412320"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..358)
                     /locus_tag="VIJ87_09540"
     CDS             complement(<1..358)
                     /locus_tag="VIJ87_09540"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5444694.1"
                     /translation="MTIPNAHVRSFPRSHAATDVIPPRETILLVDDHPSVRKLLGSIL
                     KSEGYSVLEAGSGAEAVELCHQYPDKIHLLLTDIIMPGMQGHALAEHIVSLRPAIQIL
                     YMSGYVEPQAFQQLQPP"
     gene            complement(399..611)
                     /locus_tag="VIJ87_09545"
     CDS             complement(399..611)
                     /locus_tag="VIJ87_09545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444695.1"
                     /translation="MAVLLTGSCLYHGEKTKSLRHAKTTMLVAAKPLRRHAKHLAIAN
                     QPHHRRSAGLHLDDGRFETNRQLQKP"
     gene            complement(690..>1025)
                     /locus_tag="VIJ87_09550"
     CDS             complement(690..>1025)
                     /locus_tag="VIJ87_09550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444696.1"
                     /translation="SAESVESLAIGQGEIQQDEIDRAIFQATEAVTEPVCPFKADRGV
                     ALLRQPRSDDGDVVLVIFDEQDLHCLFPSRIDTACLFLADNSPLHGVDTSGASFYVQI
                     VMEYPKALM"
BASE COUNT          232 a          288 c          264 g          241 t
ORIGIN      
        1 ccgggggctg aagctgctga aaggcctgcg gttccacata acccgacatg tagagaattt
       61 gaatggccgg cctgaggctg acgatgtgct ccgccaaggc atggccttgc ataccaggca
      121 taatgatatc cgtgaggagc aagtgaatct tgtccggata ttggtgacag agttccactg
      181 cctccgcccc gctccccgcc tctaacaccg aatagccttc gcttttgagt atcgatccca
      241 gaagttttcg aacggacgga tggtcgtcca cgagaagaat cgtctcgcgc ggtgggatga
      301 cgtctgtggc ggcatgactg cgcgggaaag acctgacatg agcgttgggt atcgtcacct
      361 cttgcctccc agtttcacac cttgcgatgt aagtatacct aaggcttctg aagttgccgg
      421 ttcgtttcaa accgtccgtc gtcgagatgt aaccccgcgg accgacgatg atgtggctga
      481 tttgcaatgg ctaaatgctt agcatgtcta cgcaatggct ttgccgcgac cagcatagtt
      541 gtctttgcat gtcgcaacga cttcgttttt tcaccatgat agaggcagct acccgtcagc
      601 aggactgcca tcttttttct taaaagagat gcctacgagc cctctcctct tctttctcct
      661 gctatgcttt tatcggctac ccgagttctt cacatcaatg ccttgggata ctccataacg
      721 atctgaacgt agaaggatgc gccgctcgta tcaacgccat gaagcggcga gttatcagcc
      781 agaaacagac aggccgtatc tatccgacta gggaataggc aatgcaagtc ctgctcatcg
      841 aagataacga ggacgacgtc tccatcatcc gagcgcggtt gacggagaag cgcgacaccg
      901 cgatccgcct tgaacggaca gaccggctca gtgacggcct cagtcgcctg aaaaatagca
      961 cgatcgatct cgtcctgttg gatctctccc tgcccgatag ccaaggactc gacactttca
     1021 gccga
//
LOCUS       DATCGC010000980         1618 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_412340, whole genome shotgun sequence.
ACCESSION   DATCGC010000980 DATCGC010000000
VERSION     DATCGC010000980.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1618
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_412340"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1618)
                     /locus_tag="VIJ87_09555"
     rRNA            complement(<1..>1618)
                     /locus_tag="VIJ87_09555"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          350 a          449 c          331 g          488 t
ORIGIN      
        1 gttcaactca ttagaccatt cgtgcaggtc ggaacttacc cgacaaggaa tttcgctacc
       61 ttaggaccgt tatagttacg gccgccgttt actggggctt cagtcaggag ctttgacttg
      121 cgtcgaacac ccttccttaa ccttccagca ccgggcaggt atcaggctct atacgtcatc
      181 tttcgatttt gcagggccct gtgtttttgt taaacagttg gttgaaccat tttactgaga
      241 cccaccgaag tgggtacgct ttatcccgaa gttacagcgt caatttgcct agttccttct
      301 ccacggctca cccgagcgcc ttagaatatt catcccgtct acctgtgtcg gtttgcggta
      361 ccagctgcta tactcgcttt tcttggaaga gcttttatca cttcgctttg tccgaagact
      421 ccactcagac gtacatttcc gtcagtacgt agcgaccacg gctctccgtc cctttcattg
      481 tatagcaggt gcaggaatat taacctgctt tccatcatct acccctttcg ggtttgacta
      541 aggaccggac taaccctgat ccgattaacg ttgatcagga acccttagac tttcggcgat
      601 aaggtttttc accttattta tcgttactta tgcctacatt ttcttttgaa atcgctccaa
      661 caaccgtcgc cggtcacctt cgacgcaatt tcaatgctcc cctaccgatc tagccttaag
      721 gctagatcat agagcttcgg ttcatagctt gatgcccgat tattttccgt gcaggatctc
      781 tcgaccagtg agctgttacg cactctttaa atgaattgct gcttccaagc aaacatcctg
      841 gctgttatag aaatcccacc tcgtttgatc aacttaacat acgcttaggg accttagctg
      901 ctaatctggg ttatttccct ctcggccacg gatcttagca cccgtagcct cactcccggt
      961 aaatatctgt tagcattcgg agtttgtcag ggtttggtag gcggtgaagc cccctagccc
     1021 aatcagtagc tctacctcta acagacttat aaaccgaggc tgttcctaaa aacatttcgg
     1081 ggagaacgag ctatctctca gtttgattgg cctttcaccc ctatccacag gtcatcccaa
     1141 gacttttcaa cgtcaacggg ttcggtcctc cagttagttt tacctaacct tcaacctgcc
     1201 catggataga tcacaaagtt tcgcgtctgc ccccactgac taaacgccct atttggactc
     1261 gctttcgcta cggctccgtt attaaggaac ttaacctcgc cagtgaggag taactcgtag
     1321 gctcattatg caaaaggcac gccgtcacat attgctatgc tccgaccgct tgtaggcgca
     1381 cggtttcagg tactatttca ctcccttgtt tagggtgctt ttcacctttc ccttacggta
     1441 ctggttcact atcggtctct gagaagtatt tagccttacc ggatggtgcc ggcagattca
     1501 ggcaggattt ctccggtccc gccttactca ggatactgct cgtcgctgtt aatttgtgct
     1561 tacgggatta tcaccctctt tgattcaact ttccagaaga ttcagcttga taacagtt
//
LOCUS       DATCGC010000981         1209 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_447332, whole genome shotgun sequence.
ACCESSION   DATCGC010000981 DATCGC010000000
VERSION     DATCGC010000981.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1209)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1209)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1209
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_447332"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            89..442
                     /locus_tag="VIJ87_09560"
     CDS             89..442
                     /locus_tag="VIJ87_09560"
                     /inference="COORDINATES: protein motif:HMM:NF025196.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4188 domain-containing protein"
                     /protein_id="HEY5444697.1"
                     /translation="MYCASFIWDPGTYDAEFHRLNDLINKVAQSSDGFLGSESWQSPD
                     GSRRCANYYWADLETLRTFSINPIHKEAKKQYARWYKGYQIVISEVIRSYGDGKLQHI
                     TESKTKRPAAKRRPM"
     gene            501..842
                     /locus_tag="VIJ87_09565"
     CDS             501..842
                     /locus_tag="VIJ87_09565"
                     /inference="COORDINATES: protein motif:HMM:NF016245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family protein"
                     /protein_id="HEY5444698.1"
                     /translation="MPILVRTIILLTISNIFMTFAWYAHLCNLHEKPWFIAAFVSWGL
                     AFFEYLFQVPANRLGYAQYSLGQLKILQEVITLSVFAPFAVLYMRQPLKLDFLWASLC
                     MVGAIYFMFRS"
     gene            906..>1209
                     /locus_tag="VIJ87_09570"
     CDS             906..>1209
                     /locus_tag="VIJ87_09570"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY5444699.1"
                     /translation="MNSYSFDHVDLRVSSFAEARKFYDVFLPALGFPGIRAMEIEVCY
                     YAAGDRKMVPFIALNEEPGHRGNANRFAFRADSDEEVDRLAAIIRQAGALNVEGPEY"
BASE COUNT          254 a          306 c          326 g          323 t
ORIGIN      
        1 tcggcgggag taggacctta gtcggataga cttcgcgggg gagttggcgg acagtcgagt
       61 gaaatagtct ctttataccg aatcgtctat gtactgtgca tctttcatct gggatcccgg
      121 aacttacgat gctgagtttc acaggctgaa tgatctgatc aacaaggttg cgcaatcgtc
      181 ggacggattt ctgggatcgg aatcatggca gtcaccggat gggtcacgca gatgtgcaaa
      241 ctactattgg gcggacctcg aaacgcttag gaccttctcg attaacccca ttcacaaaga
      301 ggcaaagaaa cagtatgctc gctggtacaa gggataccag atcgttatct cggaagtcat
      361 tcgttcctac ggtgacggca agttgcagca tatcacggaa tccaagacta agcgtccagc
      421 cgccaagcgc aggccgatgt gatgagcagg tgaatctggc tcgccctgtt gctgatctta
      481 tagttctttg gacctcgctt atgcctattc ttgtccgcac gatcattctc cttacgatct
      541 cgaacatctt catgacgttc gcctggtatg ctcatctctg taatctccat gagaaaccgt
      601 ggttcatcgc cgcgttcgtc agctggggat tggccttctt tgagtatctt ttccaggttc
      661 cggccaaccg cctcggctac gctcaataca gtctgggtca gttgaagatt cttcaggagg
      721 tcatcacgct ttctgttttc gcgccgtttg ccgttttgta tatgcggcag cctttgaagc
      781 tggacttcct ttgggcctcg ctttgcatgg tgggagcaat ttatttcatg ttccggtcgt
      841 aatacgtctt aaacagggtt gcggccttag aacgttgggt attcgttgcg gacagatcat
      901 tttgtatgaa cagctattcc ttcgaccacg ttgacctgcg cgtttccagc ttcgcagaag
      961 cgaggaaatt ttatgacgtg ttcctcccgg ctttggggtt tcccggaatc cgagccatgg
     1021 aaatcgaagt ttgctactac gcggcgggcg accgaaaaat ggttccgttc atcgcgctga
     1081 acgaggaacc gggccatcgc ggcaacgcga accgcttcgc ctttcgtgcg gatagcgacg
     1141 aagaggtcga tcgtctggcc gcgattatcc gtcaggccgg cgcgctcaat gtggaaggac
     1201 ccgaatact
//
LOCUS       DATCGC010000982         1072 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_481477, whole genome shotgun sequence.
ACCESSION   DATCGC010000982 DATCGC010000000
VERSION     DATCGC010000982.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1072)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1072)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1072
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_481477"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..518)
                     /locus_tag="VIJ87_09575"
     CDS             complement(<1..518)
                     /locus_tag="VIJ87_09575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444700.1"
                     /translation="MLPLPVVCYFQPIPHTTSSAGKYWDWPMTYRELSAQALAETDYE
                     SFLTELERALTDGRRDPNSVVQETLAEIYFGHSNTETDQLPSAARAVIHTFDPRNVTT
                     EPEYYTDIDTARYSDRKPLIWLWQMFDRSPLGQNALLGHRFRRMLSPYIFAKVGKNFK
                     CWHSVEWSFGYNL"
     gene            575..>1072
                     /locus_tag="VIJ87_09580"
     CDS             575..>1072
                     /locus_tag="VIJ87_09580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444701.1"
                     /translation="MKILRSLVVLICLALVLALIALWWNRPVKVDMSDYVPADSLIYI
                     EINSFTDLAKAIQETEAWQTTSTALGNRSKPQGSLAFFAARSGIGPVEAVVSTRAQMA
                     LVVVGVNTAEKENSLRIKPEVALVVETHTAGWRIKSTVVKNLKRLAEFAYGSSTCTER
                     TAGADF"
BASE COUNT          261 a          260 c          274 g          277 t
ORIGIN      
        1 aggttgtatc cgaatgacca ctcaacactg tgccaacatt taaaattctt tcctaccttt
       61 gcaaagatgt aaggcgatag catccggcga aatcgatgac ctaaaagcgc attttgtccg
      121 agcggtgaac gatcaaacat ctgccacagc cagatcagcg gtttgcgatc tgagtaacga
      181 gcggtgtcga tgtctgtgta gtactcgggc tcggtggtta cattccttgg gtcgaacgtg
      241 tgaatgaccg cgcgagcggc gctaggaagc tgatccgttt cggtattcga gtgaccaaag
      301 taaatctccg ccagagtctc ttgaacgacg gagttcggat ctctacgtcc gtcagttaaa
      361 gcgcgctcta gttctgttaa gaaactttcg tagtcagtct cagccaacgc ttgggctgac
      421 agttcgcgat aggtcatagg ccaatcccag tacttccctg cactgctagt tgtatgcgga
      481 attggctgaa agtaacacac gactggaagt ggcagcaatt cgaatctctt tcaacttgcc
      541 tgtcacttcg tcataacgct aggatgcgcg ctcaatgaaa atcttgcgtt ccctcgtcgt
      601 tctgatttgt ctcgccctag ttctagcgct tatcgctctc tggtggaacc gacctgtcaa
      661 agttgatatg tcggactatg tgccggcgga ttcacttatt tacattgaaa tcaacagctt
      721 cacagattta gcaaaagcga tccaggaaac tgaagcctgg cagaccacat ctacagcgct
      781 tggcaaccgc tccaagcctc aagggtcttt agccttcttt gccgctcgat ccgggattgg
      841 tccggtagag gctgtagttt cgactcgtgc ccaaatggcc ttagttgttg tcggagttaa
      901 cacagctgaa aaggaaaact cacttcgaat aaaacctgag gttgcactgg tggtggagac
      961 tcacactgca ggatggcgaa taaagagtac ggtcgtgaag aatcttaagc ggttggctga
     1021 atttgcgtat ggctcatcaa cctgcacgga gagaacggcg ggtgccgatt tt
//
LOCUS       DATCGC010000983         1158 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_247719, whole genome shotgun sequence.
ACCESSION   DATCGC010000983 DATCGC010000000
VERSION     DATCGC010000983.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1158)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1158)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1158
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247719"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..464)
                     /locus_tag="VIJ87_09585"
     CDS             complement(<1..464)
                     /locus_tag="VIJ87_09585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444702.1"
                     /translation="MKQFIEFCHARSRHRWLSFFSLDADAALGQALLPVALLIAGCAT
                     NESREMILIDSYTSREMKTLQSSPYEIQTWAWLRGISRADIQAIEALVARHREIRKPI
                     LRMMAVKNDRVQVLTGTDEHRGDIYNSFHVVKRAGKWSLEESKIEDIRVTVDR"
     gene            588..791
                     /locus_tag="VIJ87_09590"
     CDS             588..791
                     /locus_tag="VIJ87_09590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444703.1"
                     /translation="MSLQTELILPVLVVLNPLDQFIQDGILILWRGKLFGFPWAAMAV
                     SYANLNARIQEPQLGAVGKRRLN"
BASE COUNT          281 a          310 c          291 g          276 t
ORIGIN      
        1 cgatcaactg taacacgaat gtcctcgatt ttggattctt caaggctcca ctttccagcg
       61 cgtttaacga catgaaacga attataaatg tcgccgcgat gttcatcggt ccctgtgagt
      121 acctgcacgc gatcattctt cacggccatc atgcggagaa tcggtttgcg tatctcccgg
      181 tgtcgcgcta cgagggcctc aatcgcttgg atgtctgctc gggagatgcc acgtaaccaa
      241 gcccaagtct gaatctcata tggcgaggac tgcagtgtct tcatctcgcg ggacgtgtag
      301 gagtcaatca agatcatctc gcgagattca tttgtcgcac acccagcaat cagaagtgcg
      361 accggcagga gcgcttgacc caacgcggca tcagcatcta acgagaaaaa gctcagccac
      421 cggtggcggg agcgagcgtg gcaaaactca atgaattgtt tcataaaaat aaaatgtgcg
      481 catcgcgacg gccagcggtt ggctgcagcg attggttagc cttcatcata tgacccaaca
      541 gaagtgtatt ctcgctttcg accccgaaag ttgtcgaaaa gctgacgatg tcgcttcaaa
      601 ccgaactcat cctcccggtt ctcgtagtcc ttaacccact ggatcaattt atccaggatg
      661 gcattctgat cctctggcga ggaaaacttt tcgggttccc atgggcggcg atggcagtga
      721 gctacgcaaa cctcaacgcc cggattcaag aacctcaact cggtgcagtg gggaagcgcc
      781 gcctcaatta ggtcactgta acatccctcg acaatccatt gatcacttgc ccgaatgaag
      841 tcattgagtt tgcgaaggct agcatccaac ggtttgcgct ttgggcacgg aaaaccttcg
      901 tcccaagcga ttgtatctaa cgaaaggcgt gggattttgc cgccgtcgct tatttggcta
      961 gccatcgtgc tcttccccgc acccgcgtta ccaagaagga caagtctcat ttttcagctc
     1021 aaacacgctg ttgaaggcta acgtgaataa gatcaaccac cgctcgttac agcgaggctg
     1081 gcttgaaata atagcttttt agtcatcgaa agtgaagccg tacgcggtcg agcggttggc
     1141 tgcatcgcct ggttaggt
//
LOCUS       DATCGC010000984         1412 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_247734, whole genome shotgun sequence.
ACCESSION   DATCGC010000984 DATCGC010000000
VERSION     DATCGC010000984.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1412)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1412)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1412
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247734"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1033)
                     /locus_tag="VIJ87_09595"
     rRNA            complement(<1..1033)
                     /locus_tag="VIJ87_09595"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            complement(1140..1215)
                     /locus_tag="VIJ87_09600"
     tRNA            complement(1140..1215)
                     /locus_tag="VIJ87_09600"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1180..1182),aa:Ala,seq:tgc)
     gene            complement(1294..1370)
                     /locus_tag="VIJ87_09605"
     tRNA            complement(1294..1370)
                     /locus_tag="VIJ87_09605"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1334..1336),aa:Ile,seq:gat)
BASE COUNT          287 a          429 c          330 g          366 t
ORIGIN      
        1 cgtgcgtcca gtggcggcat tcggagtttg attgagttcg gtagcgttgg aacgccccta
       61 gctcattcag tgctctacct ccgccacggc tgacacgagg ctagccctct agctatttcg
      121 gggagaacca gcaatcacga ggtttgatta gcctttcacc cctacccaca gctcatccga
      181 gctttttgca acaaacaccg gttcgggcct cctccgtctg ttacgacgga ttcaccctgg
      241 ccatgggtag atcacctcgc ttcgggtcta ttcgacgcaa ctcatcgccc aattcggact
      301 cgctttcgct acggctccgc ctttccggct taaccttgct gcgccgaata actcgccggc
      361 tcattaagca aaaggcacac gattaggcat tgcccttgcg ggccatagcc ctttcgctgc
      421 ttgtaggtgt acggtttcag gttctatttc actcccctca ccggggttct tttcaccttt
      481 ccctcacggt actggtgcgc tatcggtcat cagagagtat ttagccttgg aacgtggtcg
      541 tcccggattc ccacaaggtt tctcgggccc cgtggtactc aggacctcta tccaacgagt
      601 cagggtcttt tcgcttacgg ggctgtcacc cactttggcc gatctttcca gaccgttcag
      661 ctaagatcct gctttgtaac tcgtcgacgg cgccgtatca ccatccgaca aaggccttca
      721 accccctatc tacaacgcac acgggcttga catagataag gtttaggctc atcccttttc
      781 gctcgccact actgggggaa tcgcatttgc tttcttttcc tgcaggtact gagatgtttc
      841 acttccctgc gtgggcttct cgctgcctat gtattcagca gcggataggc ggcattcatc
      901 gcctgggttt ccccattcgg gcatcctcgg atcacggcct gcttgcggct tcccgaggct
      961 tatcgcagct agctacgccc ttcgtcgcct tctgatgcca gggcatccac cgtacaccct
     1021 tagtagctta acaattacat taacattact tctgacacac atggtcttac taagacctat
     1081 tcaattgtca aagaacacag tgaagatgcg atcttcactc accgaactag agtgagtgtt
     1141 ggtggagctg ggcggaattg aaccgccgac cctctgcttg caaagcagat gctctcccaa
     1201 ctgagctacc gccccataaa acgttgaagg atgaacggcg aacgatgaag agttactgtt
     1261 tcatcgctca tcgttcatcc ttcaacgttc gcttggtggg cgtacctgga ctcgaaccag
     1321 ggacctcgat cttatcagga tcgcgctcta accaactgag ctatacgccc gcgcagccaa
     1381 gattatacca caacaatatg aggactgtgc ga
//
LOCUS       DATCGC010000985         1021 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_412364, whole genome shotgun sequence.
ACCESSION   DATCGC010000985 DATCGC010000000
VERSION     DATCGC010000985.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1021
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_412364"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..310
                     /locus_tag="VIJ87_09610"
     CDS             <1..310
                     /locus_tag="VIJ87_09610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444704.1"
                     /translation="IKFGGDSPSDQIYLGAVYAKAGDLKTAHQILKRLETSKDYVSPG
                     ELAVLYTSLGERDQAFASLEKAYAAHDLQLQFLGADSSFDSLREDPRFKDLMHRIGLT
                     "
     gene            343..555
                     /locus_tag="VIJ87_09615"
     CDS             343..555
                     /locus_tag="VIJ87_09615"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEY5444705.1"
                     /translation="MIETISRDELKAKIDRHDLFTLVETLPEIAYHHAHLPGAINLPP
                     DKVSSDAAKLLPDKNADIVVYCASPT"
     gene            711..>1021
                     /locus_tag="VIJ87_09620"
     CDS             711..>1021
                     /locus_tag="VIJ87_09620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444706.1"
                     /translation="MKQQPMSDQTLAKLQRDTFGYFKNETNLTNGMVPDNTREGAHAS
                     IAAIGLGLATYPVAVERSFISRDEAVDLVLTTLRFFWTSPQGIESDATGYKGFYYHFL
                     H"
BASE COUNT          263 a          266 c          252 g          240 t
ORIGIN      
        1 aatcaagttt ggcggcgact ctccatcgga tcagatctat ctgggcgccg tatacgctaa
       61 agccggagat ctcaagacag cgcaccagat acttaaacga ttggagacga gcaaagacta
      121 cgtgtcacct ggagaattgg cagtgcttta tacttcttta ggagaacgtg accaagcgtt
      181 tgcatccctc gagaaagctt atgcagcgca tgatctccaa ctgcaattcc tcggggctga
      241 ctcttcgttc gatagcctgc gagaagatcc gcgcttcaaa gacttgatgc accgcatcgg
      301 actcacgtaa ttcccttcaa atgaagttga gaggtgaaca atatgatcga gactatttcc
      361 agggatgagc tcaaggcgaa gattgatcgc cacgatctct tcacgttggt cgagacattg
      421 cctgagattg cttatcacca tgcgcatctg ccaggcgcga tcaacctgcc gcctgataaa
      481 gtttcttcag acgcagccaa actcttgccg gacaagaatg ctgacatcgt ggtttattgc
      541 gccagtccca cctgacacgc ttcagaaaac gccgcccgtg aattggtggc gatgggctac
      601 acaaaggtac gcgactattc tgaaggcaag tctgactgga ttgctgcggg gctaccgact
      661 gaaagtgaac accagcattg aatgaattcg cctattaaga tattcgcctc atgaaacagc
      721 aaccgatgag tgatcagacg ttggctaaac tccagcgcga cacgttcggc tacttcaaga
      781 acgaaaccaa tcttactaac ggcatggtgc cggacaatac tcgcgagggc gcacatgcga
      841 gcatcgctgc aatcggattg ggacttgcca cttatcccgt cgcagttgag cggagtttca
      901 tttcgcgtga cgaagcggtt gaccttgtcc tcacaactct gcggttcttt tggacgagtc
      961 ctcaaggcat agagtcagat gccacgggct acaaaggttt ctactatcac tttcttcaca
     1021 t
//
LOCUS       DATCGC010000986         1098 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_481495, whole genome shotgun sequence.
ACCESSION   DATCGC010000986 DATCGC010000000
VERSION     DATCGC010000986.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1098
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_481495"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(160..321)
                     /locus_tag="VIJ87_09625"
     CDS             complement(160..321)
                     /locus_tag="VIJ87_09625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444707.1"
                     /translation="MSLKITYGITDGRSGSRMAVVKSGDTVEITIEDRRGNAQSIKVS
                     RDEWKEINR"
     gene            complement(878..>1098)
                     /locus_tag="VIJ87_09630"
     CDS             complement(878..>1098)
                     /locus_tag="VIJ87_09630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444708.1"
                     /translation="DGAFLQRRLHLLSVPRKIRDVDFDEAWDAHGVYEREGYYGLSLL
                     YEDVRDSPMLGPIWRHKYLTRSLILNWL"
BASE COUNT          246 a          314 c          250 g          288 t
ORIGIN      
        1 ccccccgcct cacttcctcc aagatagtcc catcctcatc gagagtaaat tccacctctc
       61 cacagtaggg gatatccgga ttcaggtaga tggtattacc gttgcctaga gtgatctgga
      121 caaaggtaga cccgtcgcca ccatcggcaa ggataacctt catcggttga tttccttcca
      181 ctcgtcgcgg ctgaccttga ttgactgagc gttgccgcga cgatcttcaa tcgtaatctc
      241 gaccgtatcc ccgctcttga caaccgccat gcgcgaaccc gaccgaccat cagtgattcc
      301 gtatgtgatt ttgaggctca tacgtctgag tgtatcagca ccgggcagct ttggcaagca
      361 ccaatgttga ccggctgagc gatcttatat cctaccttct gtagcgcctc gcgcatgttg
      421 ttacggccca caggattagc ggtgtgcaga ataatacgac cgggaaggcg accatgctca
      481 atcatccact tgacgatttg gtatccattt ggactatcag gccctaggtc atggtccagg
      541 cttaccgtat ggacattatc cacacgggca aggtatatag tcgcctcacc ccaggtctta
      601 gcgtgcgccc agctagggac aggcgggtta cgctcgtcat ctacccaaag atacatagac
      661 acacggtact acacttgctt atcgaatgca agttccctgt tcaatgtatt tatttggact
      721 tccagccttt tggccttctc gttgtcgccc aatttagtag cgcgttccgc ctgccgacgt
      781 aggtcggccc ggatcgtcac cattatctta cgttcttcct tggacaacca agggaggcta
      841 cgacgtttct taggctctgt tctatctgtt ctatcgctca taaccaatta aggatcaaag
      901 atcgggttag gtatttgtgc cgccatatcg ggcctagcat tggagagtca cgtacgtcct
      961 cataaagcag gctcagaccg tagtaaccct cacgctcata aactccatga gcgtcccagg
     1021 cttcatcaaa gtctacgtcc ctaatttttc gcggcactga taacagatgt aatcgtcttt
     1081 gtagaaatgc tccgtccg
//
LOCUS       DATCGC010000987         1783 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_481515, whole genome shotgun sequence.
ACCESSION   DATCGC010000987 DATCGC010000000
VERSION     DATCGC010000987.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1783)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1783)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1783
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_481515"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1704
                     /gene="rpoD"
                     /locus_tag="VIJ87_09635"
     CDS             <1..1704
                     /gene="rpoD"
                     /locus_tag="VIJ87_09635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012607388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HEY5444709.1"
                     /translation="DDVMERLLELGGDKKYLTLDDLNRELPDNVVSPDDIEDVLQKLE
                     GSNIAVADSDERLLEQAVVAVAEGEEDLEEDVELDLSAGSLEKTNDPVRLYLREMGVV
                     PLLTREGEVAIAKRIERGQLKTQKAIARSPIAVRELIKIGEDLEAGKANIRETVTFSE
                     QAELTGDEDKADEYRSWTIEGIQNISKIYNGGLKEWEMLRDEQKEMRGKKSKKLTRLR
                     RSVARLRLEIAQEIGRLNLTERARQRLINSIRAVQKSVRESEREIDTFTERLNRKRLK
                     LDDQKEFKRRIISARKRLVQIEVEHNIPPVEIKRSLQAIVVGEQQTGQAKRELVEANL
                     RLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEWRRGYKFSTYATWWIRQAITRA
                     IADQARTIRIPVHMIETINKLIRTSRALVQELGREPTSEEIAKKMDIPVSKVRKVLKI
                     AQEPISLETPIGEEEDSHLGDFIEDKSILNPADAVVASNLREITDEVLATLTPREEKV
                     IKMRFGLGSTGSEHTLEEVGQHFAVTRERIRQIEAKALRKLRHPSRSRKLKAFLDGAA
                     R"
BASE COUNT          508 a          420 c          492 g          363 t
ORIGIN      
        1 gacgacgtaa tggagcgact cctcgaattg gggggcgata agaaatacct tacgcttgac
       61 gatctgaatc gcgaactacc cgataacgtt gtctcacctg acgatatcga agacgtactg
      121 caaaaactag aaggctcgaa cattgccgta gccgattccg atgaaagact tctggagcaa
      181 gcggtcgttg ctgttgccga aggcgaagaa gatctggaag aggatgtcga gctcgatctt
      241 tccgcgggaa gcttggaaaa aaccaacgac ccggttcgct tgtatcttcg cgaaatgggc
      301 gtcgtgccgc tactgactcg cgaaggcgaa gtggcaatcg ccaaacgcat cgagcgtgga
      361 cagcttaaaa cacagaaagc aattgctcgt tcaccgatcg ctgtgcggga actgataaag
      421 atcggcgagg atcttgaagc cggtaaagcc aacatccgcg agaccgttac cttttccgaa
      481 caagctgagt taacgggtga cgaagacaag gccgacgagt atcgaagctg gacgatcgaa
      541 ggcattcaga acatcagcaa gatctacaac ggcggactga aggaatggga aatgctgcgc
      601 gacgaacaaa aagaaatgcg cggcaagaag agcaagaaac taacgcgttt gcgacgcagc
      661 gttgcgcgac ttcgactcga aattgcccag gagattggcc ggctgaacct cacggagcgt
      721 gctcggcaac gtctgattaa ctcaattcga gctgtgcaaa aatccgttcg cgagtctgag
      781 agagaaatcg atacatttac agaacgtctt aaccggaagc gcctcaagct cgacgatcaa
      841 aaagaattca aacgacgcat catctcggcc aggaagcgtc tcgtccaaat cgaggtcgag
      901 cacaatattc cgccagtcga aatcaaacgc tcgcttcagg ccatcgtcgt tggtgaacaa
      961 caaaccggac aggcaaagcg tgagttagtt gaagcgaatc ttcgtttggt agtgtcgatt
     1021 gcgaagaagt acacgaatcg tggattgcag tttctggatc tcattcagga aggcaatatt
     1081 ggtttgatga aggcggtcga caagtttgag tggcgacgtg gttataagtt ttcgacttac
     1141 gcaacgtggt ggattcgcca ggcgatcact cgagcgattg ccgatcaagc acgcactatt
     1201 cgtatccctg tgcacatgat tgaaacgatc aataagttaa ttcgaacgtc acgagcatta
     1261 gtgcaggagc ttggtcgaga gccgacgagc gaggagatcg cgaaaaagat ggacattcct
     1321 gtgtcgaaag tccgaaaggt cttgaagatt gcacaggaac ctatttcgtt ggaaacacct
     1381 atcggcgaag aggaagattc acacctgggc gatttcatcg aagacaagtc gatcttgaac
     1441 ccggcggatg cggttgttgc ctcgaatctg cgggagataa ctgacgaagt attggctacg
     1501 ctgaccccgc gagaggaaaa ggtcatcaag atgagatttg ggctcgggtc aaccgggtca
     1561 gaacacaccc tcgaagaagt aggccaacac ttcgcagtca cgcgtgaacg aattcgtcag
     1621 attgaagcaa aggcgttacg taagctgcgt cacccgtcgc gctcacgaaa attgaaggct
     1681 ttccttgacg gcgctgccag ataaagttca gtcctacttg accaccaaaa aggcggtact
     1741 cctagccgta tggtcaaact catacatgta cgtgtagccg ggg
//
LOCUS       DATCGC010000988         2087 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_83136, whole genome shotgun sequence.
ACCESSION   DATCGC010000988 DATCGC010000000
VERSION     DATCGC010000988.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2087
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83136"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..250)
                     /locus_tag="VIJ87_09640"
     CDS             complement(<1..250)
                     /locus_tag="VIJ87_09640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444710.1"
                     /translation="MATGLVIHISSGEDRHTEILTDERIRIGNSESADLKLRSSSLPK
                     HSTNGNLLELVRRDGSYHVVAFDTSLEVTKNSAEFVIGD"
     gene            426..815
                     /locus_tag="VIJ87_09645"
     CDS             426..815
                     /locus_tag="VIJ87_09645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S) ferredoxin domain-containing protein"
                     /protein_id="HEY5444711.1"
                     /translation="MPNTEFIDDCDQLAELAPVATAPIQHHVFVCTGKSCSAVESAEV
                     KAAFEEELKARGLQFGSEKKGRNPKGSVVLTECGSVGFCAIGAAVMIYPDGVWYAQVR
                     AADVPEIVEQHIVNGKVVERLALMKIG"
     gene            complement(923..>2087)
                     /gene="gcvPB"
                     /locus_tag="VIJ87_09650"
     CDS             complement(923..>2087)
                     /gene="gcvPB"
                     /locus_tag="VIJ87_09650"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: protein motif:HMM:NF003346.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004375 - glycine dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0006546 - glycine catabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase
                     subunit GcvPB"
                     /protein_id="HEY5444712.1"
                     /translation="DAQGALQVIYELQQHLAEITGLPGVSLQPAAGAHGEMTGIMIIR
                     AFLDARDGDSTNRRTMLIPDSAHGTNPASAHLSGFSVKTIRSTSEGLTDLEHLRELCS
                     YGDVAGLMLTNPNTLGLFERNIKEICDIVHEAGGLVYMDGANMNALVGVTRPGDMGVD
                     VIHLNLHKTFSTPHGGGGPGCGPCCCTKELEQFLPTPRVIKTDSEYRLDYDQPQSIGR
                     VKAFFGNYGMMLRALSYTLTHGNDGLREATEAAVLNARYIAQGLSSDFDKPFDSPPMH
                     EVVFTDKRQTRKGVHTLDIAKRLIDYGFHPMTIYFPLIVQGAMLIEPTESVGRQELDQ
                     FIEAMRSIAKEAVEDPELVLNAPHNTRIGRLDEAAAARKPVLRWKPKQEAAAG"
BASE COUNT          484 a          511 c          562 g          530 t
ORIGIN      
        1 catcgccaat cacaaactca gcactgttct ttgtcacttc caaagaagtg tcaaaagcaa
       61 ctacgtggta tgagccatcg cgtctgacta actcgagcag gtttccgtta gttgagtgtt
      121 ttggtaatga agacgaacga agtttgagat cggcactctc agaattaccg atgcggatac
      181 gctcatccgt gaggatttca gtgtgccggt cttcgcccga ggagatatga ataaccaggc
      241 cggttgccat acttaagtct tcgattcaca cccaataaac aaattaggcg ccgagcagac
      301 cgcttgaaga gtttggtttg cggtcaggtg ttcggtcgcc tcgtggtgtc attctacaat
      361 gaagtgacaa gaaacggtta acgagatgag tatatcaatt tgttcgtggt agcatgtgaa
      421 caccgatgcc taacactgaa ttcattgacg attgcgacca attggctgag cttgctccgg
      481 tggctactgc accgattcaa catcacgttt ttgtgtgcac gggtaagtcg tgttccgcgg
      541 ttgagagtgc tgaagtcaaa gctgcgtttg aagaagagct gaaagcacga ggacttcagt
      601 ttggcagtga aaagaaaggt cgcaatccga agggaagtgt cgttctcacc gaatgtggtt
      661 cggttggttt ttgcgctatt ggcgccgctg taatgatcta cccggacgga gtttggtatg
      721 cgcaggttcg tgctgcagat gtgcctgaga tcgtcgaaca gcacatcgtt aatggaaagg
      781 ttgtggagcg gttggcgttg atgaaaattg gataaattgg tcttgggttt ttgggcttag
      841 gtcttcgatc gcaatgtgaa ggttttgact ttttgaatta ccgatatcga aggtcaaagg
      901 cacaaggccc aaggacaaag acctatcccg ccgccgcttc ctgcttcggc ttccatctca
      961 aaacaggctt acgcgcggca gccgcttcat ccagacgtcc aatgcgagtg ttatggggtg
     1021 cgtttagaac caactcagga tcctcgactg cctccttagc aatcgatctc atcgcttcaa
     1081 taaactgatc gagttcctgc cgtccgactg actccgttgg ctcaatcaac attgctccct
     1141 gaacaattaa agggaagtag atagtcattg ggtggaagcc ataatcgatt aggcgcttgg
     1201 caatatcgag tgtgtgtacg cccttgcgag tttggcgctt atcagtgaat acaacctcat
     1261 gcatcggcgg actatcgaag ggcttatcga aatccgaact cagaccctgc gcgatgtaac
     1321 gcgcgtttag gaccgctgcc tctgttgcct cgcgcagacc atcattgccg tgagtcaagg
     1381 tgtacgacag tgcccgcagc atcattccgt agttgccaaa gaatgctttt actcgcccga
     1441 ttgattgtgg ctgatcgtaa tcgagtcggt attctgagtc cgttttgatt acccgtggcg
     1501 tcggtaggaa ttgttcaagt tctttcgtgc agcaacaagg tccacaccca ggaccgccac
     1561 caccgtgcgg agttgaaaac gtcttgtgaa gattgagatg gatgacatca acgcccatgt
     1621 caccaggtcg cgtcacacca accagcgcat tcatgtttgc gccgtccatg tagaccaaac
     1681 cgccggcttc atgaacgatg tcgcaaattt ctttgatgtt gcgttcgaaa agaccaagcg
     1741 tgttcgggtt cgttagcatc agcccggcaa catctccgta tgaacacaat tcgcgcaagt
     1801 gctctaaatc tgtcaggcct tcgctggttg atcggatcgt cttaactgaa aatcccgaga
     1861 ggtgggccga tgctggatta gtgccgtggg ccgagtccgg aatcagcatc gttctgcggt
     1921 tggtcgagtc gccatcgcgc gcatcgagaa acgcacggat gatcatgatg ccggtcatct
     1981 caccgtgcgc tcccgcggcg ggttgtagtg aaactcccgg cagacccgtg atctcggcga
     2041 gatgctgttg caactcgtag atcacctgga gcgcgccctg ggcgtct
//
LOCUS       DATCGC010000989         1298 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_247848, whole genome shotgun sequence.
ACCESSION   DATCGC010000989 DATCGC010000000
VERSION     DATCGC010000989.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1298
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247848"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(445..>1298)
                     /locus_tag="VIJ87_09655"
     CDS             complement(445..>1298)
                     /locus_tag="VIJ87_09655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444713.1"
                     /translation="ESPIISQPPPVTAPAPPQQWRPAPTSVPQKKSNAIWWVLGGLAA
                     FAVIGIGLVVVIIAWASISASNTNNSNIGNRNENRNANVVTNSNSQPNSNTNASPPAS
                     FTDDFSQETWGKGDSKFGRIWYADGEYHMTSKDKTFIVMYAPSDDYGTENATVKVTAR
                     SVDGSVPASGFGLMVHCAQSKAKQLEDYALLIYPSDTPEYEVIMHKDGVQTSLVNKTT
                     STAIRPGTNPNQLEIRIKGSELSFYANGQYLTKITDTENYKRGRTGFYTSDATEVAFD
                     DLEISRQ"
BASE COUNT          291 a          307 c          342 g          358 t
ORIGIN      
        1 tgtgcgtatc gattgaacag cattcattaa caaccaaatt ggactgttac ggtgagtatt
       61 atgtcgataa gctttagaga ctgttgcaac gtctgaagtg gtcatcacat tagggagttg
      121 ctctcattca ccccaagctt cagcttgggg tgagagtgcg ccccggttac tcaggaaccg
      181 tttcaacggt ttacccggtc tgcgattgaa ttcgaacgcc aatgaaactt tagcgtggag
      241 cttgactggc tctcaaaacc ggtaaaccgt tcaaacggtt cctcaaaatc aggccctact
      301 gtaaccccaa gctgaagctt ggggagaatg agagttttgc aagagaccct ttagcttgcc
      361 gaacttgctg taagagaaat gaaccacggt ggattgatgg taagttagga ttggagtcaa
      421 cgacaaacta ttgtttatcg gacactactg cctgctgatc tcaagatcat cgaacgccac
      481 ttcggtagcg tcgctggtat aaaaacctgt acgcccgcgc ttgtagtttt ccgtgtccgt
      541 aatcttcgtt aggtattgtc cgttggcgta gaaggaaagc tcgctacctt tgattcgtat
      601 ttcaagctgg ttcggatttg taccaggacg aatggccgtg gaagttgtct tgtttaccag
      661 tgacgtttgc actccgtctt tgtgcatgat gacttcatat tcgggtgtat cgctagggta
      721 aatcagcagg gcatagtctt cgagttgttt tgcctttgac tgtgcacaat gaaccatcaa
      781 cccaaaacca gacgcgggta cactgccatc aacacttctt gccgtgacct tcaccgtggc
      841 gttctcggtg ccgtaatcat cggacggcgc atacatcacg atgaaggtct tgtcctttga
      901 tgtcatgtga tattcgccgt cggcatacca gatccggcca aactttgaat cgcctttgcc
      961 ccatgtttcc tggctgaagt cgtcagtgaa agacgccggg ggtgatgcat tagtgttcga
     1021 gttgggctgg ctgttgctgt tcgttactac gttagcgttc cgattctcgt tgcggttgcc
     1081 gatgttgctg ttgtttgtgt ttgaggcact tatgctggcc caggcaataa tgaccacaac
     1141 caaaccaatt ccaatcacgg caaaggcggc aagaccaccc agaacccacc agatcgcgtt
     1201 cgactttttc tgaggaactg atgttggcgc cggtcgccat tgctggggtg gagcgggtgc
     1261 ggtcaccggc ggaggttggc taattatggg tgactcgg
//
LOCUS       DATCGC010000990         3128 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_83158, whole genome shotgun sequence.
ACCESSION   DATCGC010000990 DATCGC010000000
VERSION     DATCGC010000990.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3128)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3128
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83158"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            39..3004
                     /locus_tag="VIJ87_09660"
     rRNA            39..3004
                     /locus_tag="VIJ87_09660"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          845 a          657 c          910 g          716 t
ORIGIN      
        1 aattgaatga gttgaaataa atcaaactct agtaatagtg ctggtgcaaa gacgccggtt
       61 ggaggatgac tcggcttgat aagtgatgaa ggacgtggca agctgcgata agcctagggt
      121 aggtgcatgc gaccgttgat cctaggatct ccgaatgagg tctctcaata actcccatgc
      181 ttacgcttgg gaggacgaac tgtccgaagt gaagcatctg agtaggacga ggaaaagaaa
      241 tcaacgagat tccgtaagta gcggcgagcg aaatcggaag agcccaaact gaacctgtta
      301 ctgtaaagta gtagggatgt ggtgtgctat agatttagat cctgtattta tagtcgaaat
      361 atgctggaat gtattggcat agatggtgat accccagtag acgaatgaat attggatttt
      421 tctatggcga gagtaattgg ccttgacagt ggccaacgaa aataggtgaa agtagcatct
      481 aaggctaaat attcatcaag accgatagca tactagtacc gtgagggaaa gttgaaaagt
      541 accccggaag gggggtcaaa agcgcctgaa accaaccggt tacagacgtt tacagcttga
      601 aaggatctag gtggaggttc cgcaagggac tgaagccttc tagagttgta agttccgtct
      661 agaaacacgg gccagggagc ttgttgttat ggcgagctta acccgttaag gggtaggcga
      721 agggaaacca agttcgcgca gcattagcaa ggcgaaggat ctgaaagggt cttgagtcat
      781 agcaataagg ctagaaaccg gacgatctat tcctggacaa gatgaaggtg ggcgaaagct
      841 cgctggaagt ctgaaggggt cctgacgtgc aaatcggtcc tctgatctgg gattaggggt
      901 caaaaaccaa tctagtccgg tgatcgctag ttcccaccga atcggatcgc agtcctacct
      961 tagttgagat ggcctgtgct gtagagcacc gatcggatag taagggttcg aaagagctcg
     1021 ctatccattc gaactccgaa tgtacaggcg tcgtagaaac taggagacgg gtttatgtgg
     1081 ggtaagcctc ataaccgaga gggggacaac ccagactaaa gttaaggtcc ctaaatgttt
     1141 gctaagtgtc aaacaaaagg gtgtcttaga gcagagacag caggaaggta ggctcagaag
     1201 cagccatcct ttaaagagtg cgtaacagct catctgccga gctctgaggc cccgaaaatg
     1261 gacggggctc aagtaaacta ccgatacttt agatcaccaa caaagttggt gtatggtagg
     1321 tgggcgtagt gattgggtag aagctgggtt gtgaaatcca gtggaccgat cgactagtgc
     1381 agatcctggc ggcagtaaca gcatagccgg gtgagaatct cggcgaccga atgggcaagg
     1441 gtttcccggc aatgcgtcgt cagccgggag ttagccggtc ctaagaacaa cctcaacaga
     1501 gttgtccgaa tgggaaactg gttaacattc cagtgccttg aaagatcgtt atcacccctc
     1561 ttgcagcttc aggatagggc aagcagaatc gtcgttctgt ccaagttttc gagtttcggg
     1621 gagtgtcgta atgacgagat ccgaaacgag aaatgagtgg tgctccgcaa ggaggatttg
     1681 ctcgaatcca ggagacaatg aaaacaagaa tgggaagatt ctttcaagac cgtaccgaga
     1741 tccgacactg gtgccctaga ttagtagtct aaggtctatc gggtataccg tatggcgagg
     1801 gaactcggca aaatagctcc gtacctatgg tataaggagt gcctgcagtt tttacgagga
     1861 gtagggactg caggtcgcag tgactagggg gtcccgactg tttaataaaa acacaggtgg
     1921 tcgctagtcc gaaaggatgt gtatggcctc tgtatcctgg ccagtggcgg tacctaaaac
     1981 ctgggttcaa ctgggctaag ggccgctaaa cgccgggagt aactctgact ctcttaaggt
     2041 agccaaatgc cttgtcgggt aagttccgac gtgcatgaat ggaacaacga gggccccgct
     2101 gtccctgcct acaacccggt gaagccacat aacgtggacg aacagtccac gaacctctgt
     2161 cggggagaga agaccctgtg gagctttact gcagcctgtt gttgctgtat ggttgcgaat
     2221 gcagagagta gctgggagcc ttcgaagtca gtcctccggg attgatggag gcaacgttgt
     2281 aacaccagcc atttgctacc gtacggctaa cccgttttta cggggacatc ggcaggtggg
     2341 cagttcggct ggggcggcac ccccttgaaa aagtatcgag ggggcccaaa gattggctca
     2401 agcgggacag aactccgctg ttgagggcaa agccagaagc cagtctgact ggatctccaa
     2461 tgatacgaga ttcagaggcg aaagccgggc ttagcgatcc atcatgtccc cactattggg
     2521 ggctggtggt gacagaaaag ttaccctagg gataacaggc tcgtcgcggg cgagagctcc
     2581 catcgacccc gcggtttggt acctcgatgt cggctcttcc catcctggtt ctgcagcagg
     2641 agccaagggt ggggctgctc gcccattaaa ggggaacgtg agctgggttt agaccgtcgt
     2701 gagacaggtc ggtctctgcc tgacaggggt gtagttgttt gaggggaagt tgcccatagt
     2761 acgagaggaa cagggcagcg cagcctctgg tttatcagtt gtccgacagg gcaggctgag
     2821 ccgctaagct gtttaggata actcctgaaa gcatctaagg aggaaacctt tcccgagaaa
     2881 agacaacctt ctgtaaggag aagggcagct atagaagata gcattgatag aatggaggtg
     2941 tacgcatcga gctttttgcg aggtgttcag cctgccatta ctaatagccc aacgcacctg
     3001 atttagaact aactagatga tggattcaat atcattcaat acgatagaat tcattataaa
     3061 gttcagtttg ctcaatgtca attgttcttt tgtatgataa tcttttttta ttttttttga
     3121 aatttcat
//
LOCUS       DATCGC010000991         1331 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_412463, whole genome shotgun sequence.
ACCESSION   DATCGC010000991 DATCGC010000000
VERSION     DATCGC010000991.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1331
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_412463"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..484
                     /locus_tag="VIJ87_09665"
     CDS             <1..484
                     /locus_tag="VIJ87_09665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444714.1"
                     /translation="TVFSISMRPVSFEFIERRAMSKNYKQRLELLPSDAVMISGSQTI
                     AVTYWASIGAGHWETIGTGGGWPGDGLFAVVEGHLAKGKRVFIDSDPRWWLPCGWQRD
                     EIPRIVELEQHFRFRRVTDVIFELRPMTDSTAQDTPDLKRLLPENRPEDAKKCPGSRI
                     "
     gene            502..>1331
                     /locus_tag="VIJ87_09670"
     CDS             502..>1331
                     /locus_tag="VIJ87_09670"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5444715.1"
                     /translation="MSYEVFLAFRYLRSRHKRRLARITALVAVCGIAMGVAALIVALA
                     LSNGFRDEMRDKILQGTAHINVLRSDGLPITDNDVTSQIQKVDGVISASATTYDGAVA
                     RGPKGSAYAVLRGIESGAGEAQSLQHWLAAGSMFSTAASSGEPQAVVGVELANRIGVS
                     TGDLLLVIPAGAAANATNVSTRRLRVSGVFRSGLFEYDSTWIYLPLGVATSFTSANHS
                     ASIVSVQVNRPEDVKLVAANIKKTLGGSYSTIDWQQANQPLFAALALERRMGLFIIGL
                     "
BASE COUNT          305 a          334 c          379 g          313 t
ORIGIN      
        1 gactgtgttc agcatctcga tgaggccggt gagttttgaa ttcattgagc ggcgggcgat
       61 gagcaagaac tacaagcaac gactcgaact gctgccatcc gatgcagtta tgatttcggg
      121 ttcacaaact atcgccgtta cctactgggc ctcaatcggt gcagggcatt gggaaacgat
      181 aggcaccggc ggcggttggc cgggcgatgg attgttcgct gtcgttgaag gtcatctcgc
      241 taaggggaaa cgagtcttca tcgacagtga tcctcgctgg tggctaccgt gcggttggca
      301 gcgcgatgag attccaagga tagtagaact cgaacagcat ttcaggtttc gacgagtaac
      361 cgatgtaatc ttcgagttgc gaccaatgac cgacagcact gcgcaagaca ccccagacct
      421 caaacgcttg cttccggaga acaggccgga agacgcgaag aaatgtcccg gtagtcgaat
      481 ctaactgcac atttgtgatc gatgtcttac gaagtttttc tagcatttcg ctatctccgt
      541 tcgcgacata aacgccgcct cgcgcgaatc actgcgctgg tagccgtgtg tgggattgcc
      601 atgggtgttg cggctctgat tgttgcgctt gctttatcga acggctttcg cgacgagatg
      661 cgcgacaaga ttcttcaagg cactgctcac atcaatgtac tgcgatcaga cggccttccg
      721 atcacggaca acgacgtcac aagtcaaatc caaaaagtgg atggcgtcat aagcgcctct
      781 gcgacgacat acgatggcgc agttgcgcgc ggcccgaagg gttcggctta tgcagtcttg
      841 cgcggaattg agagcggggc tggtgaagcg caatcgttgc agcactggtt agcggctggg
      901 tccatgtttt caaccgctgc gagcagtgga gagcctcagg cagtggttgg tgttgaactg
      961 gcgaaccgaa taggcgtgtc gacgggtgat cttctactgg ttattccagc gggtgcagct
     1021 gccaacgcga cgaatgtctc aaccagaaga ctgcgtgtca gtggtgtctt tcgttctgga
     1081 ttattcgaat acgattcaac ctggatttac ctacctcttg gcgtggctac gtcattcacc
     1141 agcgcgaacc attcggcttc aattgtcagt gtccaggtga atagacctga ggatgtaaag
     1201 ctcgttgccg caaacatcaa aaaaacactt ggcgggagtt acagcacaat tgactggcag
     1261 caggcaaacc aaccactctt tgctgcactc gcgctggaac gccgcatggg cttgttcatc
     1321 atcggattaa t
//
LOCUS       DATCGC010000992         2143 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_147347, whole genome shotgun sequence.
ACCESSION   DATCGC010000992 DATCGC010000000
VERSION     DATCGC010000992.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2143
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147347"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1190)
                     /locus_tag="VIJ87_09675"
     CDS             complement(<1..1190)
                     /locus_tag="VIJ87_09675"
                     /inference="COORDINATES: protein motif:HMM:NF016800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HEY5444716.1"
                     /translation="MTTSVSTDTTSVVIADSSPLSVPAPSRERAVYKIRHSLASRFVF
                     LVICVGIVMSALAFGTVHYWALSLFNLGALTILILWVIDSWQLGTLRVSRSLLQLPLL
                     GILFLGLVQLLPLRSVGGLGLSTTVTHALSLDPNSTRLFLVQLSTLLVYFSATLVFTD
                     TPHRLHILVRTILIFGFCLALFGLTQSIASPNKVYWFKELTQSTAFGPFINRHHFAGY
                     MELTIALPLGLLFGGAVEKEKRLLYLFVAGLMGIALVMTTSRGGIISLIAEILFFAGI
                     TAVWRPEIEERHTRQDRVKGAAIRVAMGVGLIVALFVGVMLLGGEFSITRFIDSVNTD
                     DPTTGRSHFWSVTLDIIKAHPWLGTGLGAFGVVYTQYDSRSGLFRLEQAHNDYLQILS
                     DGGV"
     gene            complement(1159..>2143)
                     /locus_tag="VIJ87_09680"
     CDS             complement(1159..>2143)
                     /locus_tag="VIJ87_09680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5444717.1"
                     /translation="MSLGTAREQNGEIEKGEAALRKATSLAPSYAYPHWYLGNLLLRS
                     GRYDEAFHELRIASEGDPSVLRPQLFYLMGAVYGNDPEVLPAVIGPSVESRSSFAVYL
                     LSQQKVDDAIRIWNTLGADDKRTRKADGDSMISTLISNHRFQDAMNVWNDLAATPAYR
                     AQVSRITDGSFEESITYGPETVFGWQVKAVPQTQIGIDPNTSHEGGRSLRMVFQVRTQ
                     LDAALAAQLVPVVPNSGYDFECFVRTAKFQSGGPLTIQILDASQGTVLATSESAPNGD
                     NDWARVALTFKTAAKTEAVILRIVRGSCGDATVCPIFGNVWYDDFSINRHN"
BASE COUNT          560 a          579 c          519 g          485 t
ORIGIN      
        1 ataactccgc cgtctgacag aatctgtaga taatcgttgt gagcctgctc gagcctaaac
       61 aaaccgctgc gggagtcata ctgtgtatag acaacaccaa acgcgccaag acctgtcccg
      121 agccagggat gcgctttgat aatgtcgagt gtcactgacc agaaatggga tctaccagtg
      181 gttggatcgt cggtgttcac actatcgatg aacctggtga tcgaaaactc ccctcccaaa
      241 agcatgacgc cgacaaagag cgctacaatc agacctacac ccattgccac gcggatcgcg
      301 gcacctttca ctcgatcttg tcgtgtgtgc cgctcctcaa tttctggccg ccagaccgct
      361 gtgattccgg caaagaaaag tatttccgca atgaggctga tgattccacc gcgcgaagtt
      421 gtcatcacca aagcgatacc catcaacccg gccacaaaca ggtaaagcag tcgcttctct
      481 ttttcgacag ctccaccaaa caacagaccg agaggcaacg cgatcgtcaa ctccatatag
      541 ccggcgaagt gatgccgatt gatgaaaggt ccgaaggcgg tgctttgggt taactcctta
      601 aaccagtaaa ccttattcgg acttgcgatt gattgcgtaa gcccaaacag cgctagacaa
      661 aaaccaaaga ttagaattgt tctgacgaga atatgtaaac ggtgtggtgt atcggtaaaa
      721 accagggttg ccgaaaagta aactaagagc gttgatagct ggactaagaa tagtcgtgtg
      781 gaatttggat ctagagacag ggcatgggta acagtagtgg acaagcccag tcctcccaca
      841 cttcgaagtg gaagaagttg gaccaatccg agaaacagta tgcccagcag cggcaattgc
      901 aacagactcc gactaaccct caacgtcccc aactgccagc tgtcaatcac ccacaggatc
      961 agaatcgtta gcgcgccaag attgaagagg ctcaaagccc aatagtgaac ggttccgaaa
     1021 gccaacgctg acatgacgat gccgacacaa atcaccagga acacgaatcg gctggctagc
     1081 gaatgcctga ttttgtatac agcacgttct cgcgacggcg ccggaaccga aagcggagaa
     1141 ctatcagcta tgaccacact agttgtgtcg gttgatactg aagtcgtcat accacacgtt
     1201 tccaaagatc ggacacaccg tagcgtctcc acaggaacct cggacaattc tcaaaatgac
     1261 agcttctgtt tttgccgcag tcttgaaagt tagggctact cgggcccaat cgttatcgcc
     1321 attcggagcg gattccgatg ttgccaggac cgtaccctga ctcgcatcga gtatttgaat
     1381 tgttaacgga cccccgctct ggaatttcgc ggttcttaca aagcactcga agtcgtaacc
     1441 cgaatttgga acaactggga ccaactgcgc agccagcgcc gcatcaagct gtgttctgac
     1501 ttgaaacacc atgcgcaaac ttcgaccacc ttcgtgcgag gtgttgggat cgatgcctat
     1561 ctgcgtttgc ggcacggcct tgacctgcca accaaaaacg gtttcgggtc cgtaagtgat
     1621 cgattcttca aagcttccgt cagttattcg acttacctgg gcccggtagg cgggcgtggc
     1681 cgccagatca ttccaaacat tcatcgcatc ctgaaatcga tgattgctga tcagcgtact
     1741 gatcatcgaa tcgccgtcgg cctttctggt tctcttgtca tcggcaccga gcgtgttcca
     1801 gattctaatt gcgtcatcca ctttctgttg gcttagcaaa tagacagcaa acgaagagcg
     1861 cgattccaca cttggtccga taaccgctgg taaaacctcc ggatcgtttc cgtagactgc
     1921 ccccatcaga taaaacaatt gtggacgcaa tacagatggg tcgccttcac ttgcaattcg
     1981 aagttcgtgg aaagcttcat cgtaacgtcc gctccgcagc aacaggttgc ccaggtacca
     2041 atgtgggtag gcataggatg gagcgagtga ggtcgctttt cgcagtgctg cttctccttt
     2101 ttcgatttcg ccattttgct ctcgagcagt tccgagcgac atc
//
LOCUS       DATCGC010000993         1175 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_316611, whole genome shotgun sequence.
ACCESSION   DATCGC010000993 DATCGC010000000
VERSION     DATCGC010000993.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1175)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1175)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1175
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_316611"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..347
                     /locus_tag="VIJ87_09685"
     CDS             <1..347
                     /locus_tag="VIJ87_09685"
                     /inference="COORDINATES: protein motif:HMM:NF024545.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEY5444718.1"
                     /translation="DAFLLEHRFQGAPTTEIAKQFGDKFAAKMAELPVGQWVGPVQSG
                     YGMHLVFVEDRVEGRLPELAEVRDAVQRDWANARRLESNEKFFNSLLKHYQVVVEKID
                     PAKAEQKLAKAK"
     gene            344..>1175
                     /locus_tag="VIJ87_09690"
     CDS             344..>1175
                     /locus_tag="VIJ87_09690"
                     /inference="COORDINATES: protein motif:HMM:NF025167.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HupE/UreJ family protein"
                     /protein_id="HEY5444719.1"
                     /translation="MKLSRAVRHSLLPGASVMSSEVETSLISSAPNQSRDSSTSLGMT
                     TNDATYISSPRETAKTRVPSLIAFLFFVTSLSASAHEIRPAYLELRQTGADTYDVLWK
                     VPARGDNMRLGIYVEFPSGTTNVTTPRTLFANDASTERWIVKRAGGLTGDKIYVTGLE
                     ATMTDVLVRVENLDDTTQVTRVTPSSPSFVVAATPSALEVTRTYLVLGVEHILFGIDH
                     LLFVLALLILVKGWRKLVGTITAFTIAHSITLAAATLGFVHVPGKPVEATIALSIVFV
                     A"
BASE COUNT          268 a          306 c          329 g          272 t
ORIGIN      
        1 gcgatgcgtt cctgctggag catcgattcc agggagcgcc gactaccgaa attgcaaaac
       61 aatttgggga caagttcgcg gcaaagatgg ctgagcttcc agtagggcaa tgggtcggtc
      121 cagtccagtc aggctatggc atgcatcttg tgttcgtgga agaccgagtc gaagggcgtc
      181 tgcctgagtt agctgaagtt cgtgacgcgg ttcaacgcga ctgggctaat gcccgtcgac
      241 tggaatcgaa cgagaagttt ttcaacagct tgcttaagca ctaccaagtg gtggtcgaaa
      301 aaatcgatcc ggcgaaagct gaacaaaaat tggcaaaggc gaaatgaaac tctcgagagc
      361 agtgcgtcac tccctcttgc ccggtgcctc tgtcatgtcg agcgaagtcg agacatctct
      421 gatcagttcc gctccaaatc aatctagaga ttcctcgact tcgctcggaa tgacaacgaa
      481 cgatgctaca tacatatctt ctccacggga gacagcgaag acgagagttc cgtcactgat
      541 cgcttttctt ttcttcgtga cttcgttgtc cgcttcggcg cacgaaatcc gcccagcgta
      601 cctcgaactg cgtcagacgg gcgcggacac ttacgatgta ttgtggaaag tgccggcgcg
      661 tggcgacaac atgcgattag gcatctacgt ggagttccca tccgggacga cgaacgttac
      721 tacgccacga accttatttg ctaatgacgc gtcgactgaa cggtggatcg taaaacgggc
      781 cggcggatta acgggggaca aaatttacgt taccggtctc gaggctacca tgactgacgt
      841 cctggtgcgg gttgaaaatc tggatgatac cactcaagta actcgtgtca cgccgtcatc
      901 gccgtcgttt gtggtagcag ccacgccgag tgcgctggaa gttacgcgca cttacctggt
      961 gctgggagtg gagcacattc tattcggtat tgaccatcta ctgttcgtgc tagccttgct
     1021 tattctagtg aagggatggc gcaagctcgt cggaaccatc accgcgttca cgatcgccca
     1081 tagtattacg cttgcagccg ccacgttggg attcgtgcat gtcccaggca agccggtcga
     1141 ggcgacgata gcgctgagca tcgtcttcgt tgctt
//
LOCUS       DATCGC010000994         3641 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_213158, whole genome shotgun sequence.
ACCESSION   DATCGC010000994 DATCGC010000000
VERSION     DATCGC010000994.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3641)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3641)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3641
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213158"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..258
                     /locus_tag="VIJ87_09695"
     CDS             <1..258
                     /locus_tag="VIJ87_09695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444720.1"
                     /translation="HPRYNGNPEHHPVPVPPQGLQVIRVYGEFRQHLHYALGPKAMDE
                     ETAVNTIDGWPDKGHEVVTPPLPEKLFLWREKGIRPIEAFL"
     gene            255..1046
                     /locus_tag="VIJ87_09700"
     CDS             255..1046
                     /locus_tag="VIJ87_09700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444721.1"
                     /translation="MISYCVCVYRPRLFYILLDDLIRKTGVPYEILVWLNTRAPELEA
                     YIERLALRGIPVKVVGSSPENVGMVGYKMLFLNAKYDMIAQVHDDVICISRNIAKKAA
                     AIFKKHGKVKQIVADVIQDSFTTGGRPGDDSYIQVYEEERLFSGPIDGWFSIYHRSIL
                     PIVVEAPYAPYFYLGSYVQMQLAASKKEGLLCKAMKVLHLAGPAYSQLFETVESEARK
                     YTGLGNKEAADRYLNMKPSPELLDQMCQQYKKNVEIIEEFGSDES"
     gene            1043..1750
                     /locus_tag="VIJ87_09705"
     CDS             1043..1750
                     /locus_tag="VIJ87_09705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444722.1"
                     /translation="MSSKLDILVVAYHARKELIQTLVSISLFSKPGYRLTVYENAAHN
                     YPLTWLWNRFVESSRRPYVALCNPDIIVGPGWDTETLACLEEHPDVGVVQPFTNCGQH
                     NELFQTAGGQFPGEMEIEAAPDVTNRLKKEFSHRRFAFGMNRDLVFGHCYILSRSVWK
                     DLGGFDEKFQFGGNEYDFNERLIKRNKHLAVCGHAFAYHFWNASSKDAKTRNEWDHQR
                     GQPIFKTPPSHKSFPEV"
     gene            1751..>3641
                     /locus_tag="VIJ87_09710"
     CDS             1751..>3641
                     /locus_tag="VIJ87_09710"
                     /inference="COORDINATES: protein motif:HMM:NF016850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CmcI family methyltransferase"
                     /protein_id="HEY5444723.1"
                     /translation="MIVLNIVTALSRPKNIPVIIRSMEGLRQIPDLRVRWIIVYDSQA
                     EAPKEVMAPGPLPTSLEIVPVAWTHGPCRFGVNQKNFGMDHMEPGFYHLLDDDNIVHP
                     SFFSRVVDLIQKHPEKKAFGFNQKRWDHHGDLPCRPDKMVPGKIDNTMFVVATDFIGS
                     KRYDLARAGMEDGWFFHELFHKDQNAWFFPDEWVTYYNYLAHHKVEPVTVTTPTLDVF
                     VVTYRSDAYLPGLLADLRATSKVSYNLKVVDNTGNKKTLTALWNDLWKESSAEYIAFL
                     NPDIKVSPGWDERLLECLQKRPDVGIALANRYFPMNGKPDLSYMTRVSGEYTNQTRYK
                     DLGEHLEGFYAFMTRRSVLQSLKGFDERFRFYFADSNFQLRALRVFGLKTTQVNYCLI
                     AHIGAVSTQEADRLGEIDRQAEFRYVEETRAQMRSGSLRVWHELSDQERAEVRHHPIY
                     ARMPVKGQVQSSIPSSGDSMKLIIDNIYSPEGRKALMDAYTKSYWADKLYHRVTWLGA
                     PLLQIPEDLIAMAQLIWAVKPKLIIECGIWQGGGLLFYSSILNLIGQGSVIGVDVGTA
                     QAEHVKTHPQGNRISIIQGSSASQEVAQVLSARAAASSPVILILDSNHTAEHVRNELK
                     TLSSLV"
BASE COUNT          906 a          904 c          968 g          863 t
ORIGIN      
        1 catccccgct acaacgggaa tcccgagcat caccctgtcc ccgtcccacc acagggtctc
       61 caggtgatcc gggtttatgg ggagttcagg cagcatcttc actatgccct cggccccaag
      121 gccatggacg aagaaaccgc ggtaaatacg atcgatggat ggccggataa agggcatgaa
      181 gtcgtcactc cgccattacc ggaaaagctg ttcctctgga gagaaaaggg aataaggcca
      241 atagaggcgt tcctatgatt tcctattgcg tctgcgtcta tcggccgcgc ctgttctaca
      301 tcctcttgga tgatctcatc cggaagacgg gcgttcccta cgagatcctt gtctggctga
      361 atacgagggc ccctgagcta gaagcctaca tcgaacggct ggctctgcga gggatcccgg
      421 tcaaagtggt cggctcaagt cctgagaacg tcggtatggt cggttacaag atgctgttcc
      481 tgaatgccaa gtacgacatg attgctcagg ttcatgacga tgtaatttgc atctccagga
      541 atatcgccaa aaaagcggcg gcgattttca agaagcacgg caaagtaaag cagatcgtcg
      601 ccgacgtcat tcaggattcc tttaccactg gtggtaggcc tggcgatgat tcctatatcc
      661 aggtctatga ggaggaacgc ctcttttcag ggccgatcga cggttggttc agcatctatc
      721 accgttcgat tctcccgatc gtcgtagaag caccctatgc tccttatttc tacctgggga
      781 gctacgtgca gatgcaattg gccgcttcca aaaaagaggg cctgctttgc aaagcaatga
      841 aggttctcca tctcgccggg cctgcatatt ctcaactgtt cgaaacggtg gaatctgaag
      901 cgaggaaata tacggggctt gggaacaagg aggcggctga tcgttacctc aacatgaagc
      961 cctctccaga attactcgac cagatgtgcc agcagtacaa gaagaacgtc gaaatcatcg
     1021 aggagttcgg atcggacgaa tcatgagctc aaagctggac atcctggttg tcgcgtatca
     1081 tgcccgcaaa gagttgatcc aaactctagt cagcatcagt cttttttcga agcctggata
     1141 caggcttacg gtctacgaaa atgccgctca taattaccct ttgacttggc tatggaatag
     1201 gttcgtcgaa tcgagtcggc gtccctatgt agctctctgc aatccggata tcattgtcgg
     1261 cccaggatgg gacacggaga ctctggcctg tctggaagaa caccctgatg ttggagtcgt
     1321 tcagcccttc accaactgtg gccagcataa cgagctgttt cagaccgcgg gagggcaatt
     1381 cccgggagag atggaaatag aggcggcacc agacgtcacg aatcgcctaa agaaggagtt
     1441 cagccataga cgctttgcct ttgggatgaa cagagatctg gtattcgggc attgctacat
     1501 tctcagcagg agcgtgtgga aagaccttgg cggtttcgat gagaaattcc aattcggcgg
     1561 caatgagtat gatttcaatg agcggctgat aaaacggaat aagcatctgg ctgtgtgtgg
     1621 gcatgccttt gcttatcatt tctggaatgc cagttcaaag gatgcaaaga ccaggaatga
     1681 atgggaccat caaagaggac agccgatctt caaaactccg ccttcccaca agtcattccc
     1741 agaggtctag gtgatcgtac ttaatatcgt cacggcactg tccaggccga aaaacattcc
     1801 ggtgattatt cggtctatgg agggtcttag gcagattccc gatcttagag tcagatggat
     1861 tatcgtttac gacagtcagg ctgaggcgcc caaagaagta atggctccag gcccactgcc
     1921 gacatccctc gagatcgtgc ctgttgcctg gacgcacggc ccctgccgct tcggagtcaa
     1981 tcagaagaat ttcggaatgg atcacatgga gccgggcttc taccatcttc tggacgacga
     2041 caatatcgtc catccatcat tcttcagccg tgtggtggac cttattcaga agcatcccga
     2101 gaaaaaagcg tttggattca atcaaaaacg gtgggatcac catggcgact tgccctgcag
     2161 gccggacaag atggtgccag gcaagatcga caataccatg ttcgtggtgg caaccgattt
     2221 catcgggtcg aagagatacg atctcgccag agctggcatg gaagacggtt ggttctttca
     2281 cgaacttttt cacaaggatc agaatgcctg gttcttcccg gatgaatggg tgacctatta
     2341 caactatcta gctcatcata aggtggaacc tgtgacagtt actacgccaa ccctcgatgt
     2401 gttcgttgtt acctaccggt ccgatgctta tcttccgggg ttattggctg atttgagagc
     2461 gaccagcaag gtctcctaca acctcaaggt ggtcgacaat accgggaaca agaagacgct
     2521 gacggcactg tggaacgatc tgtggaaaga aagcagcgct gagtacatcg cattcttgaa
     2581 tcccgatatc aaggtttccc cgggatggga tgagcgtctt ttggaatgtc ttcaaaagag
     2641 gcctgatgtc gggatcgctc ttgctaatcg ctatttcccg atgaatggga agcccgatct
     2701 gtcttatatg acccgggttt ctggggaata caccaaccaa accagataca aggatctggg
     2761 agaacatctc gaaggattct acgccttcat gaccaggcgg tctgttctac agagcctcaa
     2821 ggggttcgat gagcggttcc gcttctattt cgccgattcg aattttcagc ttcgcgctct
     2881 gagagtattc ggtctgaaga ctacgcaagt caattattgc ctgatcgcac atatcggagc
     2941 ggtctcgacg caagaagcag atcgccttgg tgaaatagat cgccaagcag aatttcgcta
     3001 tgtcgaagag acgcgcgctc agatgcgttc cggaagccta agggtctggc atgaactgtc
     3061 ggatcaagaa agagcggagg tcaggcatca cccgatttat gctcggatgc ctgtaaaggg
     3121 acaggttcaa agttccatcc cgtcttctgg agattctatg aagctgatta tcgacaacat
     3181 ctattcccca gaaggccgca aggcgctgat ggatgcgtat acgaaatcat actgggcgga
     3241 caaactatat catcgggtga cgtggcttgg agcgcctctt cttcagatcc cggaagatct
     3301 tattgcgatg gcgcaactca tctgggcagt caaaccaaaa ctgattattg agtgcggcat
     3361 ctggcaaggt gggggattgc tgttctattc atcgatccta aacctgatcg ggcaagggtc
     3421 tgtgattggt gttgatgtcg gaaccgctca ggcagaacac gtaaagaccc atccccaagg
     3481 gaacaggata tccattatcc agggcagttc tgcgtctcag gaagtcgctc aggtattaag
     3541 cgcaagagcg gcagcttctt ctccggttat tctgatcctc gatagcaatc atacggcgga
     3601 gcatgttcgc aacgaactga agacgctctc ttcattggtc g
//
LOCUS       DATCGC010000995         1588 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_447534, whole genome shotgun sequence.
ACCESSION   DATCGC010000995 DATCGC010000000
VERSION     DATCGC010000995.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1588)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1588
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_447534"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1010
                     /locus_tag="VIJ87_09715"
     CDS             <1..1010
                     /locus_tag="VIJ87_09715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444724.1"
                     /translation="DEYVAAENRILKAQIKARLRLSDAERTTLAEIGHRLGRKALEEV
                     AAVAKPDTILGWYRKLIANKFDGSKARRIQGRPRIEEEIESLVVRMAKENPSWGYDRI
                     VGAMANLGHKLSDQTVGNILRRHDVPPAPKRKHTTSWKDFIRGHLDVLAGTDFFTVEV
                     FTLKGLVTYYVLFFIHLESRKVCLAGMTPNPDEKWMKQTARNATLEQWGFLANCRYLL
                     HDRDSKFCPAFDQIIESGNVKPIQLPARSPNLNSFSERWVKSVKEECLSKLILFGESS
                     LRRALQAYELHYHEERNHQGKENTLLFPRQAQPVGSDQGSIQCQERLGGLLKYYYRQA
                     A"
BASE COUNT          372 a          368 c          464 g          384 t
ORIGIN      
        1 gggatgaata tgtggccgct gaaaaccgca tactgaaagc acagatcaag gctaggctgc
       61 gcctttctga tgccgagagg accaccctgg cagagatcgg tcatcggctg ggccgcaaag
      121 ctcttgaaga agtggctgcc gtggccaaac cagacacgat tctgggctgg tatcggaaac
      181 tgatcgccaa caagtttgat ggatcgaagg ctcgtcgaat tcagggccgt cccaggattg
      241 aagaggagat agaaagtctg gtcgtacgga tggccaagga gaatccgagt tggggctacg
      301 accggattgt gggagccatg gccaaccttg gtcacaagct gtcagaccag accgtcggca
      361 atatcctccg tcgtcatgac gtgcctcccg ctccaaagcg gaagcacacg accagttgga
      421 aagacttcat ccgcggtcat ttggatgttc tggctgggac cgatttcttc acagtcgaag
      481 tcttcacgct aaaaggctta gtcacttact atgttctttt tttcatccat ctggagagcc
      541 gcaaggtgtg cctggcaggg atgacgccta atccggatga aaagtggatg aagcagacgg
      601 ccaggaacgc caccctggag caatggggct ttttggcaaa ttgccggtac ttactccatg
      661 accgagacag caagttctgt ccggcctttg atcagatcat tgaatcggga aatgtcaaac
      721 cgatccaatt gccagccagg agtcccaatt taaactcctt ttcggagagg tgggtcaagt
      781 cggtcaaaga ggagtgcctg tcgaagttga ttctcttcgg cgagtcttcg ctgaggcgag
      841 ccttacaagc ttacgaactt cattaccatg aagaacgcaa tcatcaaggg aaggagaata
      901 cactcctgtt tcctcggcag gctcaaccgg tggggagtga tcagggatcg attcaatgtc
      961 aggagcgatt gggaggtctc ctcaagtact actatcggca ggcggcatga gcagcagagc
     1021 gggcaatcag attcagacga caagattcta cctttctggg tttctctcat tggttttggc
     1081 tgtgctcaag ctgacggccg tcagtgattg gtcttggtgg cgggtcttgc tgcctttatg
     1141 ggtgttctta ggtcacaaca ccgcctacat cctggttggt ttcatttgcc tattcttcgc
     1201 aagatatgga gaagaggagg aagaggagga gccgcccgtt gacgagagca atctcataca
     1261 gggttaccac ttcgcggcga tgctatttgt cctcatcttc gtggataact tactgagatg
     1321 gatggaggga aggggagatt cgaattggtt ttggctttgc tcggggaagt tagagatcct
     1381 ggtattgttt ggagttctca gtctggtcac ccactttttg tactggtcag ggattgtagc
     1441 tgtagttaat gagcagcgac ctggaggtta aatggggaac ggtttcgctc gctggccatg
     1501 gctgtgatcg aatcggcttt agacaccgac ccggtaaagc caatgaagga gatgaactcg
     1561 gcttggcttg catcgccgca agagcgtc
//
LOCUS       DATCGC010000996         1234 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_280930, whole genome shotgun sequence.
ACCESSION   DATCGC010000996 DATCGC010000000
VERSION     DATCGC010000996.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1234)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1234)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1234
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280930"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1194)
                     /locus_tag="VIJ87_09720"
     CDS             complement(<1..1194)
                     /locus_tag="VIJ87_09720"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEY5444725.1"
                     /translation="MGTVSYMSPEQSLAVKTLDYRTDIWSLGVVLYEMLTGQLPFQGK
                     TLYQQIVAIQEQPHLPLSTFDEHVPKRLEEIVNKALAKNPDDRYLTANDFLIDLRSLN
                     RQLEVDTANNRTALFDQRTSAGSFSAGHTSGPNSSSSAEYIVNQVKLHRRFAIALLGV
                     LALVAALTFVWYLKQKHAALLTDKDTILLAEFENKTGEDVFDGTLRQGLAVQLQQSPF
                     LDIFPAQRVRATLQLMSLSPDERVTRERAREICQRQGLKAFITGTIVKFDRNYSITLE
                     ALNGQTGDGLALVQVEAEGKDQVLKALSRAASELREKLGEELSSIQKFDAKLEVTTSS
                     LEALKEYALGRNEQDKGQSFKAIEFYKKATALDPKFATAWLGLGLQYSNTSQPGLGAD
                     CLSKAF"
BASE COUNT          279 a          346 c          308 g          301 t
ORIGIN      
        1 aaacgcttta gataagcagt ccgcccctaa ccccggttgg ctggtattcg agtactgcaa
       61 acccaggccc aaccaggcag tcgcaaattt cggatccagc gccgtcgctt tcttataaaa
      121 ctcgatcgcc ttgaacgact ggcccttgtc ctgttcattt ctgcccagcg catattcctt
      181 cagtgcttcc agcgatgacg tcgtgacctc gagcttggca tcaaacttct gaatcgagct
      241 caactcctct ccgagtttct cgcgcaactc actggcagca cgcgagagcg ccttaagtac
      301 ctggtcttta ccttctgctt cgacctggac cagtgccagc ccatcgcctg tttggccgtt
      361 aagagcctcc aaagtgatcg aatagttacg atcaaacttt acgatcgttc cggtgatgaa
      421 agccttcagc ccctggcgct gacagatttc gcgcgcccgc tcgcgggtca cgcgctcgtc
      481 gggggaaaga ctcattagtt gcaacgtcgc acgaactcgc tgggccggaa agatgtcgag
      541 aaacggcgac tgttgtaact gcacggcaag cccctgccgc agggtaccgt cgaaaacgtc
      601 ttcgccagtc ttgttttcga actcggctaa caggatcgtg tctttgtcag tgagaagagc
      661 ggcgtgtttt tgtttgagat accaaacaaa cgtcagtgct gctacaagag ccagcactcc
      721 caacaaagca atcgcgaagc gtcgatgtaa cttaacttga ttaactatgt actctgcgct
      781 tgaggaagaa ttcggcccgc ttgtgtgccc ggctgaaaag gaacctgccg aggtacgctg
      841 atcaaaaagc gcggtgcgat tgtttgcggt gtcaacctcc agttggcggt tgagacttcg
      901 taaatcgatc aggaagtcat tcgccgttag ataacgatcg tcagggtttt tcgccaacgc
      961 tttattgacg atctcttcca accgtttggg tacgtgttcg tcaaaagtcg acaacgggag
     1021 atgtggctgt tcttgaattg caacgatctg ctgataaagg gtcttcccct ggaatggcaa
     1081 ctgccccgtc aacatttcat aaagcaccac acccaggctc cagatatcgg tgcgatagtc
     1141 caacgttttc acggccagcg attgctcggg cgacatgtaa ctgacggtgc ccattacgat
     1201 gcctgtttcc gtcttaagca ccgcacctga atcg
//
LOCUS       DATCGC010000997         1355 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_181459, whole genome shotgun sequence.
ACCESSION   DATCGC010000997 DATCGC010000000
VERSION     DATCGC010000997.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1355
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181459"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..350
                     /locus_tag="VIJ87_09725"
     CDS             <1..350
                     /locus_tag="VIJ87_09725"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEY5444726.1"
                     /translation="RIVGKSKAIELMVTGELFDFERGLELGVINQIIEAETGDQFRDQ
                     VMDYARQFTAPNKAAHAVGKIKRSVQTGAEIPFESALALERELQQQLFQSEDAKEGLD
                     AYVGKRKAKFKGR"
     gene            475..1266
                     /locus_tag="VIJ87_09730"
     CDS             475..1266
                     /locus_tag="VIJ87_09730"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase"
                     /protein_id="HEY5444727.1"
                     /translation="MPYENILVSEAEGIMTITLNRPDKLNSFIGHMRRDLAEVLEHGG
                     SERSIRAVIITGAGRGFCAGGDVEFMAELMERRESEEFARILGAGRRVILAIRQMTKP
                     VIAAVNGIAAGAGCNLALACDFRIASTAATFTQSFIKVGLNPDWGGTYFLPRLVTPNK
                     ACELFFLGETLSAEEALRLNIVNWVVAPDELESATRELAERLRAAPPIALAAAKQAVY
                     MSEANDLETMLRHETESQLRCFESDDGHEGVRAFLEKREPHFTGH"
BASE COUNT          344 a          338 c          368 g          305 t
ORIGIN      
        1 ctcgaattgt cggtaaatca aaagcaatcg aactgatggt cacaggtgaa ctcttcgatt
       61 ttgagagagg attggagttg ggagttatca atcaaataat cgaagcagaa acgggagatc
      121 aattcagaga tcaggttatg gattatgccc ggcagttcac ggcgccgaat aaagccgctc
      181 atgctgtagg caaaatcaaa cgcagtgtac aaacgggagc cgagattcca ttcgagtcgg
      241 ccttagcact tgagcgcgag ctacaacaac aactcttcca atccgaagac gcgaaggaag
      301 gtctggatgc ttatgttggg aagaggaagg cgaagtttaa aggaaggtaa atattgtgct
      361 tggtattttg agctttgtac tttgttcgct tcgtcaggtc acactctagc taaacgagat
      421 tgctcaagct aaaaagaaca aagcacaaag tacaaagcac aaagctcaca acttatgccc
      481 tacgaaaaca tcctggtatc agaagccgaa ggcatcatga cgatcaccct gaatcgccct
      541 gacaagctca actccttcat tggacacatg cgtcgggatt tagccgaagt tctcgaacat
      601 ggcggtagcg aacgtagtat tcgcgcggtc attatcaccg gagcgggccg cggtttttgt
      661 gccggcggcg atgtcgagtt catggcggag ttgatggaac gacgggaatc tgaagagttc
      721 gctcgtattc tcggcgcagg tcggcgagta attctcgcca ttcgacagat gaccaaaccc
      781 gtgatcgccg cggtcaatgg aattgccgca ggcgcaggct gcaatctggc cctcgcgtgc
      841 gatttccgta ttgcctctac cgcagcaacc tttacgcagt cgtttatcaa agtcggtcta
      901 aatccagatt ggggtggtac gtactttctg cctcgactcg tcaccccgaa caaagcctgc
      961 gaattgtttt ttctcggtga gactctcagc gccgaagaag ctttgcgtct caatattgtg
     1021 aattgggttg tcgcaccgga tgagcttgaa agcgccaccc gggaactcgc cgaacgtttg
     1081 cgcgctgccc caccaatcgc gctggcggct gccaagcagg cggtctacat gagcgaggca
     1141 aacgatctgg aaacgatgtt gcgccacgaa acggagtcgc aattgcgatg cttcgaatcc
     1201 gacgacggtc acgaaggcgt acgtgcgttc ctggaaaaac gcgagccgca ctttactgga
     1261 cactaaaaac gggtgtcggg tgtcagtcgg taccctttag tagtaccttc agcactaatg
     1321 ggcgcgctct tctgggaccg caggcgtcct cgcct
//
LOCUS       DATCGC010000998         1662 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_412573, whole genome shotgun sequence.
ACCESSION   DATCGC010000998 DATCGC010000000
VERSION     DATCGC010000998.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1662)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1662)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1662
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_412573"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..182)
                     /locus_tag="VIJ87_09735"
     CDS             complement(<1..182)
                     /locus_tag="VIJ87_09735"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEY5444728.1"
                     /translation="MNYRQFGRTDWNVSDVGYGMWGMGSWSNSDDNESLSSLQASVDL
                     GCNFFDTAYAYGEGRS"
     gene            complement(403..777)
                     /locus_tag="VIJ87_09740"
     CDS             complement(403..777)
                     /locus_tag="VIJ87_09740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444729.1"
                     /translation="MKSIVNRIVVVLMVGALTSVAAFAKVHKHSVIFENDTKVGGTVV
                     KKGTYDLKFDDQSGQLSIIKNGKTVAQAMAKLEARDKKAGDFQVRSTGIGDEAQLLGV
                     TFGGSTQDVVISNNGASTSGSN"
     gene            1461..>1662
                     /locus_tag="VIJ87_09745"
     CDS             1461..>1662
                     /locus_tag="VIJ87_09745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444730.1"
                     /translation="MRKIIGALSLTSALIFTLAVHAAAPANFGGTWNLDKAKSQGLSQ
                     RIQGADSVTWTITQDDKAITIEE"
BASE COUNT          407 a          440 c          358 g          457 t
ORIGIN      
        1 tcactgcggc cttcaccgta ggcgtatgca gtgtcgaaaa aattacagcc cagatctact
       61 gacgcttgaa gcgagctcag cgattcattg tcgtcggaat tagaccagct acccatgccc
      121 cacattccgt atcccacgtc gctaacattc caatccgtcc gtccaaattg tctgtagttc
      181 attcggcgct cctgagtaat tcagttgata tgaagacatt tcatcatagc gcatgtgatg
      241 tccgatatgc tttagcttgt ctccgtctaa cttaagcgag cgttggtttc cttagacgcc
      301 cttcatcgat cacggcgaca agctaaagca tatcggacat gaaaacgcct cgggatccaa
      361 agatcccgag gcgttggtgt tattgctatt tagttgttcg gcttagttgc tgcctgaagt
      421 ggaagctccg ttgttgctga tcacaacatc ctgagttgat ccaccgaaag tcacaccgag
      481 aagctgcgct tcatcgccaa taccagttga acgaacctgg aagtctccgg ctttcttgtc
      541 gcgcgcttcc agtttggcca ttgcttgagc caccgtcttg ccgttcttga tgatcgacaa
      601 ctgaccactc tggtcatcaa acttcagatc gtacgttccc ttttttacga cagtgccgcc
      661 gacttttgtg tcgttttcaa atatgactga atgcttgtgc actttcgcaa acgcggcgac
      721 gctcgttagc gccccgacca tcaacactac aactatccga tttacaattg acttcatctt
      781 gctctcctta tcccgtgttc ggcctacagc taaagcacct tctggtcttt ttacgcaagc
      841 ctggtttagt ttcaaacttc tgatggctct tacaccctta tgattgcgaa aaacgttcca
      901 tcaaaaagtc acatcgtcaa cgccttccac tctgcggata aacaccactc gcgagtgtct
      961 tatgacaaaa aattaatgac agcgaaaagg tgttcacaat tgcaagttgg gccttcgcat
     1021 tctcgtacag acgctgctgt ctccattcgt gtcacatgca gattcctctt caacggtcca
     1081 atagttccac aaatccgtcg aattgttttc tgcgcttcaa agaacaatcg gcggagttag
     1141 gagtccacct attgacactt cgccttgtta cgcaatcaat cgtaaaaagg ttcccgctcg
     1201 caacccggca aactgtgggc ggtgatcgcg ttaattactt atacagagca tgagatgctg
     1261 tcagctagac ctctttacca tctctataca attctttaca tttgcttaca gtgttctggt
     1321 ggtcactttg atagactccg ttcactctct gagttgctcg gctggccgaa gtgttattga
     1381 tcccgaagaa ttcgaacctt tggttagtat gcggcgtctt agttccgaca aaacatgaat
     1441 gattctgaag gagatcttga atgagaaaaa taattggcgc tttgagcctg acaagcgcac
     1501 tcatatttac tctggctgtg catgccgccg caccagcgaa tttcggcggt acctggaatc
     1561 tcgacaaggc taagagccag ggacttagcc agcgcataca aggcgcagat agcgtgacct
     1621 ggacaatcac acaagacgac aaggcgatca ccattgaaga ga
//
LOCUS       DATCGC010000999         2348 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_48465, whole genome shotgun sequence.
ACCESSION   DATCGC010000999 DATCGC010000000
VERSION     DATCGC010000999.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2348)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2348)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2348
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48465"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1290)
                     /locus_tag="VIJ87_09750"
     CDS             complement(<1..1290)
                     /locus_tag="VIJ87_09750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444731.1"
                     /translation="MTPENNLANEDLLASALAVAETVEGEEHSELLEAIATEYCRRGD
                     LSTAEELAETIQDPYLRDRTIGTLAALSFDVQAPEAANQLLDSIEDPSLVAIAIEQTA
                     ISLANRGEFEEAIRLTAELADPTDALSNIAVLYAQSGAFEAAIEVAKMIEPAHSRTTT
                     FGQIALESLDKGRAEEASELLGEATSAAEEIEFPEDQVYSLAGLASIYEKLGDRESSL
                     DRLMQAHELCGDIESSAGVGITATAGRDQALSQVVGGLAALNDYSQADSVLEEIEDPF
                     QFSLASMQLAEAYHKDGKQQPAKELLDQAVEIAREPELTGERGIAVREQVLSMLAYRY
                     ALCGYFDESLKLAESITGTDQKTSLLVDIGRQLVVAGRDASRAAEFLTDLSKTSTFWM
                     AVSDAYWDANLPEEAARAITKAQASADAIEYAYEKSMA"
     gene            1417..>2348
                     /gene="msrP"
                     /locus_tag="VIJ87_09755"
     CDS             1417..>2348
                     /gene="msrP"
                     /locus_tag="VIJ87_09755"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: protein motif:HMM:NF003767.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016667 - oxidoreductase activity, acting
                     on a sulfur group of donors [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HEY5444732.1"
                     /translation="MAGNAEPEKITDKETFLNRRLFIQSAVLAGTAAASTLLYRRLNP
                     PAVKQVEGEKLSEVALVSKEEALKNGFVVDEQKTPLQSITNYNNFYEFDTSKSGVAYA
                     AKGFVSRPWSVSVEGLVNKPRVFDLDELLKFQQEERVYRFRCVEGWSMVIPWIGFPLK
                     ALLDKVEPTSQARYVAFQTLLDPKRMPNQSIGILDWPYVEGLRLDEAMHPLTIMATGL
                     YGETLPPQDGAPIRLVVPWKYGFKSIKSVVKISLVADEPPTTWNIQSPDEYGFYSNVN
                     PNVPHPRWSQATEQRIGEYGKRKTMIFNGYGEQVA"
BASE COUNT          548 a          629 c          592 g          579 t
ORIGIN      
        1 cgccatgctc ttttcgtagg catactcaat cgcatctgcg ctcgcttgag cttttgtgat
       61 agccctcgcg gcctcttcgg gaagatttgc gtcccagtac gcatcactta cggccatcca
      121 gaaggtggag gttttagaca aatcagtcaa gaactctgca gctcgtgaag catcgcgtcc
      181 ggcaaccacc aactgtcgtc caatatcgac aagcaaactt gttttctgat ctgtaccggt
      241 aattgactcg gctagcttga ggctttcgtc aaagtaaccg cagagtgcat atctgtaagc
      301 caacatcgac agcacttgct ctcgaacagc aatacccctt tcaccggtca attccggctc
      361 tcgagcaatc tcgaccgcct gatccagtag ctcctttgcg ggctgttgct tgccatcttt
      421 gtgatacgcc tcagccagct gcatgctggc gagtgaaaac tgaaacgggt cttcaatctc
      481 ttcgagcact gagtcggcct gggagtaatc gttcagggcc gccagaccgc caacaacttg
      541 ggacaacgcc tggtcacgtc cagcagtagc tgtaattccc acgccggcag aactctcgat
      601 gtcgccgcag agttcgtgtg cctgcataag tctatccagt gacgactcac gatcacccag
      661 cttttcgtaa attgaggcca aaccggctag tgagtagacc tgatcctcgg ggaactcaat
      721 ctcctcggcc gcgctagttg cttctcccag tagttcagaa gcctcttcag cgcgcccttt
      781 gtcgagtgat tcaagggcta tttgtccgaa ggtcgttgtt cgactgtgcg ctggctcaat
      841 catcttggcc acttcgattg cagcctcgaa agctccgctc tgcgcgtaaa gcacagcaat
      901 gttgctcaaa gcatctgtgg ggtctgccag ttcggctgtc aggcgaattg cttcttcgaa
      961 ttcaccgcgg tttgcgaggc tgattgcggt ttgttcaatg gcaatcgcaa ccaaactggg
     1021 atcttcaatg gagtcgagga gttgattggc tgcctcgggt gcttggacat caaaactcaa
     1081 cgctgcgagg gttccgatcg tcctgtctcg caggtaggga tcctgaatgg tctctgcaag
     1141 ctcctcagcg gtgctcaaat ctccgcgtcg acagtactcc gtggcaatgg cctccaataa
     1201 ttccgaatgc tcttcgccct cgactgtttc tgctacagcc agcgcagaag ccagcaagtc
     1261 ttcattagct aagttgtttt ctggagtcat cttcgttcac tctcaataat ggttcgttgt
     1321 tgagtcgttg cgtcgacatc caaattccac gcttccagcg taagtattaa gcgaacccgc
     1381 gactagtgag ggtattctaa aaacagggtg tcaaatatgg ccggaaatgc tgagccggaa
     1441 aaaattactg acaaagaaac ctttctaaac cggcgtctct tcatacaaag cgcggtgttg
     1501 gcaggaactg ctgccgccag cacgttgctc taccgccgtc tcaatccgcc ggcggtcaag
     1561 caggtcgagg gagagaagct cagcgaagtc gctctcgtct caaaagaaga agcgctcaag
     1621 aacggttttg tcgtcgacga acagaagaca ccacttcaaa gcatcacaaa ttacaacaac
     1681 ttctacgaat tcgacacctc gaagagtggc gttgcctatg ccgccaaagg ttttgtgtct
     1741 cgaccgtggt ctgtttcggt tgagggactt gtaaataagc cccgagtttt tgaccttgat
     1801 gaactactaa agttccaaca ggaagaacgc gtctatcgtt ttcgctgtgt cgaaggttgg
     1861 tcgatggtga ttccgtggat tgggtttccc ctgaaagcgc ttctcgacaa agttgagccc
     1921 acttcccagg ctcgttacgt agcgtttcaa accttgttgg acccgaagcg aatgccaaac
     1981 cagtcgatcg gcattctcga ttggccttac gtcgaaggtt tacggcttga tgaagcaatg
     2041 catccattga cgatcatggc cacgggactc tatggagaaa cattgccacc acaggacggc
     2101 gctcccattc ggctcgtagt tccatggaag tacggtttca agagcattaa gtcagtggtg
     2161 aagatttcgt tggtagctga tgaaccgcca acgacttgga atatccagtc acccgatgag
     2221 tacggatttt attcgaacgt aaatccaaac gtcccgcacc cgcgctggag tcaagcgacg
     2281 gagcaacgaa ttggcgaata cggcaaacgt aagacgatga tcttcaatgg atacggtgag
     2341 caggtagc
//
LOCUS       DATCGC010001000         1078 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_113928, whole genome shotgun sequence.
ACCESSION   DATCGC010001000 DATCGC010000000
VERSION     DATCGC010001000.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1078)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1078
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113928"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..508)
                     /locus_tag="VIJ87_09760"
     CDS             complement(<1..508)
                     /locus_tag="VIJ87_09760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444733.1"
                     /translation="MSVKNRDGRVTVIASEELKSKAIIEARSSGAAVSESDITTKGSG
                     GKLEVDVRQRGERDRIDVVVRIPIRSKVEVESGPGAVSVIGNLESAIVKTDTGTIHAD
                     VPLDTLKYDFVWEASKPRYMSDVELKEVKEKAGGWFRLEGRLGEKDSPKEERVALNFH
                     TQRGVVLLN"
     gene            828..>1078
                     /locus_tag="VIJ87_09765"
     CDS             828..>1078
                     /locus_tag="VIJ87_09765"
                     /EC_number="2.1.1.44"
                     /inference="COORDINATES: protein motif:HMM:NF021530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-histidine N(alpha)-methyltransferase"
                     /protein_id="HEY5444734.1"
                     /translation="MGQCTVQERSREDKEQEQQRREQEESSRLLIHNLVKRDPRTGLA
                     EDVRKGLEAHPKRFLPKYFYDELGSQLFEAICLLPEYYLT"
BASE COUNT          245 a          311 c          268 g          254 t
ORIGIN      
        1 cattcaggag tacgacaccg cgttgcgtgt gaaagttgag tgcgacgcgt tcttcttttg
       61 gcgaatcttt ctcaccgagt ctgccttcga gtcgaaacca gccgcccgct ttctctttca
      121 cttctttcaa ctcgacgtcg ctcatgtagc gcggtttgct ggcctcccaa acgaagtcgt
      181 acttcaacgt atcgagcggt acatcggcgt gaattgttcc ggtgtcggtt ttgacaatcg
      241 ctgactccag attgccaatc acactcaccg cgcccggccc actttcaact tcaactttgg
      301 atcgaatcgg aattctcaca accacatcga tccgatcgcg ctcgcctctt tgccgaacgt
      361 caacttccag cttcccacca ctgcccttcg tcgtaatgtc gctttccgag accgctgcgc
      421 ccgaagatcg cgcctcaata atcgccttgc tcttcaactc ttcgctggca attacagtca
      481 cgcgcccatc ccgattcttg acggacaaag agaccgtctc cgctgtagcg aattcccgtt
      541 gatagctggg aagttcttgc gctttgagtg agaggcaaag cacacccgcc aatagcaacg
      601 aggctaagtg acttagtgat atcggggata cagggcgccg cagaaaccgg gcgaggtact
      661 cacaaaaaaa catcgcgggt gatcttgcgc gagagaagag tgggtggtca agttgcccat
      721 gacttgcagt tgtttgccct cgccacctta tcggctatca tatcccgact cgcaaatcag
      781 caaccccctc gtccatagcc gtcacgcatt cagcaggaga gtgtcgtttg ggacaatgta
      841 ctgttcagga gcggagtcga gaagacaagg agcaggagca acaacggcgg gagcaggaag
      901 aaagctcacg gcttctgatt cacaatctcg tcaaacgaga tccacgcacc gggttggcgg
      961 aggatgtgcg caaaggtctc gaagcgcacc cgaaacgctt tcttccaaaa tacttctacg
     1021 atgaacttgg ctcgcagttg tttgaggcga tctgtctgct gcctgaatat tatttgac
//
LOCUS       DATCGC010001001         1977 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_281018, whole genome shotgun sequence.
ACCESSION   DATCGC010001001 DATCGC010000000
VERSION     DATCGC010001001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1977)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1977)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1977
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281018"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(404..497)
                     /locus_tag="VIJ87_09770"
     tRNA            complement(404..497)
                     /locus_tag="VIJ87_09770"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(461..463),aa:Cys,seq:gca)
     gene            complement(628..>1977)
                     /locus_tag="VIJ87_09775"
     CDS             complement(628..>1977)
                     /locus_tag="VIJ87_09775"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase C-terminal domain-containing
                     protein"
                     /protein_id="HEY5444735.1"
                     /translation="IRKLPPGTMLVFERGGCREERWYNYTPVPFSNPKEDKEAREELL
                     ELYRGAVRRHLLSDVPVGILLSGGLDSGLLLGLMNEQGGPWPAFTVGYGEIFEDDELA
                     DAKETAGVLGAVHVPVKLDQAEFERSLPKIVECLEEPIASSSIVPMYFVSQRARQDVK
                     VALMGQGPDELFGGYKRHLGVHYGNWWRWLPSAIRSSVSFAVDRLPRNETLKRGVSSL
                     GTLDRMKRYQHVFSLAPARIIDGLFRDDTLPRRNGDELVEYWRGLIPQMAHTDELGGF
                     QLLEIRSSLPDELLMYADKLSMAHSLEVRVPYLDRTVVEYVQRLGAGFKVRNGSRKWL
                     HRRVCERYLPSRILKRKKRGFAVNVVDDWFHSSLTGELQEVLLDESSLMFGLLNPKPV
                     RTLLEGHQSGRQDNHKLLFSLVMVEQCLRASRSYRRPSLCANPTNGQLSGFRQPGAS"
BASE COUNT          466 a          559 c          486 g          466 t
ORIGIN      
        1 tccgcttttc tggccttatt tcgggcggtc cgatcaatct gtctttccca ccagtaggaa
       61 taactcttga ttggaagcgc cgctatggaa tcccgttcca tagggtaaga atacctcggt
      121 tctgtatccg gcaggcgctg ccagaaagtc agaatatcag ggcgatcttg ggctcttcga
      181 agtgcgtcga ggagtagctc tgggttctct acgtcctcga accactcttg ctgaggatcg
      241 tcgtgaggcc gtgcaatccg cacaaccttc ccttcgacca acattttttg cccgttgatt
      301 tccacgctcg tgctaattct ttgccgcggc ggctggggcc cagcgcctta aattacatca
      361 ttatcgtgca ttttcggcaa tgcgccaaag cacctgaaca atgtggcgga aaggggaagg
      421 attcgaacct ccgatacggc ttcaaccgta tagcaaccct tgcgaatcac tgccttagat
      481 cactgagcta cctttccaac agaagatacc gctaagccaa cgttttccaa tcaatttggg
      541 attcacgtcg gccgtcctgc aacgcacttc gcaacttcac cgatacaagt cgtatttcta
      601 acgaagtcct cgagtcaaag tcaaaatcta tgaggcacca ggctgccgga agcctgataa
      661 ttgaccgttt gtcggatttg cacacaacga cggcctccta tacgaccggc tggcacgtaa
      721 gcattgctcg accatcacca gactaaacag aagcttgtgg ttgtcctggc ggccggattg
      781 gtgaccttcg aggagtgttc gcacgggttt agggttaagt aagccaaaca tgagagagct
      841 ttcatccaag agcacttctt gaagctcgcc ggtaagtgat gagtggaacc agtcgtccac
      901 gacgtttacg gcaaaaccgc gtttctttcg cttcaagata cgagatggca agtaacgttc
      961 gcaaactcgg cggtgcagcc attttcgact gccattacga accttgaatc ctgcgccaag
     1021 ccgctggacg tactctacca ccgtccgatc caagtatgga acgcggactt cgagactgtg
     1081 tgccattgag agcttgtccg cgtacatgag aagctcgtca ggcagcgagg agcgaatttc
     1141 aagaagctga aaaccaccca gttcatctgt gtgcgccatt tgtggaatca gaccgcgcca
     1201 gtattcaacg agctcatcgc catttcgcct cggaagtgta tcatcccgaa agagtccgtc
     1261 tatgatgcgt gctggcgcta gagaaaaaac gtgctggtag cgcttcattc tatccagcgt
     1321 tcccagcgat gagacaccgc gcttcaatgt ttcgttacga ggcaatcgat cgacagcgaa
     1381 gctgaccgag gaacgaatag cgctcggcag ccaacgccac caattaccat aatgaacgcc
     1441 caaatgccgt ttgtagccgc cgaacaattc gtccggcccc tggcccatca gagcgacctt
     1501 gacgtcctgt cgcgcccgtt gcgagacgaa atacattggg actatggaag aagacgcgat
     1561 tggctcttcc agacattcca cgatctttgg aagtgatcgt tcgaattcgg cctggtcgag
     1621 cttaaccggc acgtgaacag cgcccaaaac accggctgtc tcctttgcat cggccagctc
     1681 gtcatcttcg aaaatctctc cgtaacctac agtaaatgct ggccatggcc cgccttgttc
     1741 gttcatcaga cccaggagca agcctgagtc gaggccgcca ctaagaagta ttcccacggg
     1801 gacatcgctc agcagatgtc gtcgaaccgc accccgatac aattctaaaa gttcttccct
     1861 ggcttctttg tcttcttttg gatttgaaaa gggaactggc gtgtagttgt accaacgttc
     1921 ttcgcgacat cctcctcgct caaaaaccag catcgtcccc ggcgggagtt tccggat
//
LOCUS       DATCGC010001002         2065 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_48500, whole genome shotgun sequence.
ACCESSION   DATCGC010001002 DATCGC010000000
VERSION     DATCGC010001002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2065)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2065)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2065
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48500"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1141)
                     /locus_tag="VIJ87_09780"
     CDS             complement(<1..1141)
                     /locus_tag="VIJ87_09780"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEY5444736.1"
                     /translation="MYLARLNLNGRALSRSVQYRCGWCTILFLVVISASLLPCTAQTK
                     RLVIIKCDGLPYDFVEKFVAERDPQTGKSTLPWIDYIFHQRGTRLSNFYVRGMSLSAP
                     SWSLLDTGQHLQLKGNVEFDRYTLHSYDYLNFIPLYIARINGSRIDMPGVEELDALGI
                     PLLADAYRNDERYLGFSLFLRGARYSTLQRGLQGQFTKSPKDLFDEWTMGFELRHSLT
                     DQLVRELTAKLADPKVTYLDLFLPDFDHIAHHNNDVQSQLYVLKQMDAVIGQVWTAIN
                     KSPLADETALVLVSDHGTNTDEKVYSQGFNLVKLLGSSGGGGHHVITKRRLMLDYAIK
                     GINPMVPMITTTTDESYYLKGQSTSYPTALLDFDGNERASLHLRDS"
     gene            complement(1144..>2065)
                     /locus_tag="VIJ87_09785"
     CDS             complement(1144..>2065)
                     /locus_tag="VIJ87_09785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444737.1"
                     /translation="VDFRDTYNPKKREMSRRALNDVTRNILSISKFGNLPFFLGRSVY
                     DFVTGRRGIDLNQPSRLQSYSQLKLLLALNDSMDPKLRDQLNGRAENVSLNPFDNDLN
                     AEAKAAREQYDALVAFAKNPVGLAAKVDRDRRAELTSLEHGRNTQIFFRVANVLSFGR
                     YVHREAETSDMETRLDIARRLDHHTRFLREVAKSTAQVEVAWNIDDIRRSLNFIADHG
                     DKAGSNAATATSKIFSRTRDDEIRRACLESLSRINSNKARNELLKISQNQTLDQSWRD
                     IAEASLHRLNQQAPPISMTVNSTSLKTGQP"
BASE COUNT          511 a          507 c          524 g          523 t
ORIGIN      
        1 cactatcgcg caaatgtagt gatgctcgtt cgttgccatc aaagtcgagc agcgcagttg
       61 gataacttgt gctttgaccc tttaagtaat acgactcgtc agtagttgtc gtaatcatcg
      121 gaaccatcgg gttgataccc ttgattgcgt agtccaacat taaccgccgc ttagtaatta
      181 catggtgtcc cccaccacca gaactaccca aaagcttcac cagattgaag ccctggctgt
      241 agaccttctc gtcggtattt gtgccatggt ctgacaccaa aacaagcgcc gtttcatcag
      301 ccagagggct tttgttgatt gctgtccaca cctgtccaat gactgcatcc atctgtttca
      361 acacgtagag ctgtgattgc acgtcattgt tgtgatgggc gatatgatcg aaatcgggca
      421 agaacaaatc caggtaggtc acctttgggt cggcaagttt tgcggtcagt tctcggacca
      481 actgatcggt tagagagtgt cgcagttcaa aacccatagt ccactcgtca aagaggtcct
      541 tgggtgactt tgtgaactga ccttgtaagc cgcgttgcaa cgttgagtat cgagcgcctc
      601 gtaggaataa agaaaaaccc aggtagcgct cgtcgttccg atacgcgtca gcaagcaacg
      661 ggataccgag cgcatctaac tcttcaacac ccggcatatc gatacgtgat ccgtttattc
      721 gagcgatgta tagcggaata aagttcaggt agtcgtacga gtgaagagta tagcgatcaa
      781 attcgacgtt ccctttaagc tgaagatgtt gacctgtatc tagaagtgac caggaaggcg
      841 ccgacaagct cataccgcgg acgtagaaat ttgagagcct ggttccacgc tgatgaaaga
      901 tgtagtcgat ccagggcagc gtgctttttc cagtttgcgg gtcacgttcc gcaacgaact
      961 tctccacaaa atcgtaaggc agaccgtcgc atttaataat gaccagacgc tttgtttgcg
     1021 cagtgcatgg cagcaggctt gctgaaatga caaccaggaa aagaatcgtg caccagccac
     1081 aacggtattg caccgagcgg ctgagagccc tgccgttcag attaaggcgg gctagataca
     1141 tttctaaggt tgacccgtct tcagcgaggt tgagttaacg gtcatgctga tgggtggggc
     1201 ttgctgattc aaccggtgaa gacttgcctc agcaatatct cgccacgatt gatcgagggt
     1261 ttgattttga gagatcttga gaagctcatt ccgggctttg ttgctgttga tacgcgaaag
     1321 actctcgagg caggcgcgac gaatctcatc gtctcgtgtg cgcgaaaata tctttgacgt
     1381 tgcagtggcc gcgttcgatc cagccttatc gccatgatcg gcaatgaagt tcaaagacct
     1441 gcggatgtcg tctatattcc aggcgacttc cacctgcgct gtcgatttgg caacctcacg
     1501 aaggaatctc gtgtggtgat caagccgtcg tgcgatatca agtcgagtct ccatatcgct
     1561 cgtttccgcc tcgcgatgaa cgtaccttcc aaacgagagg acgttggcga cccgaaagaa
     1621 tatttgtgtg ttgcgaccgt gctcaaggga agtcaattca gcacgacgat ctcggtccac
     1681 tttcgccgcc aggccaactg gattttttgc aaaagcaaca agcgcatcgt actgttcgcg
     1741 cgcagccttt gcctcagcat tcaaatcatt atcaaatggg tttagagaga cattttctgc
     1801 tctgccgttc aactggtccc gaagttttgg gtccatcgaa tcgtttagcg cgagcaacag
     1861 ctttaactgt gagtacgatt ggagtcgtga aggctgattg agatcgattc ctcgtcggcc
     1921 agtcacaaag tcataaactg agcgaccgag gaagaacggc agattcccaa attttgaaat
     1981 agagagaatg tttcgcgtca catcgttaag cgcacgccgc gacatctctc tcttctttgg
     2041 attgtaggta tcgcgaaaat caacc
//
LOCUS       DATCGC010001003         3139 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_447656, whole genome shotgun sequence.
ACCESSION   DATCGC010001003 DATCGC010000000
VERSION     DATCGC010001003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3139)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3139)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3139
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_447656"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..857
                     /locus_tag="VIJ87_09790"
     CDS             <1..857
                     /locus_tag="VIJ87_09790"
                     /inference="COORDINATES: protein motif:HMM:NF025617.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4350 domain-containing protein"
                     /protein_id="HEY5444738.1"
                     /translation="TLLTQQIGEVMPSRFAARMKVVAMNSVSAEHSGEHKLPSVEIVE
                     NETENNLAAPVVHISDRDGALLVDYAYGAGRITVLGDPYVVANNGISSHDNLQLAINL
                     VSSVDGLVAFDEYHQGKGITQNEFASYFAGTPVLPIAAQVILLILFVLWTRARRFARP
                     LPLVQVDRRSSLEFVASMSELQERSRAFDLAVENIYSRTRRVLSRYAGVDYNSSRSEV
                     AARVAMRSTLDAHGLETLMRQCEETINGAPTSWRQAIDLVRRLREVERALGLRMRSRD
                     ARQAAEKI"
     gene            1042..1995
                     /locus_tag="VIJ87_09795"
     CDS             1042..1995
                     /locus_tag="VIJ87_09795"
                     /inference="COORDINATES: protein motif:HMM:NF040105.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HEY5444739.1"
                     /translation="MSEYVSSTVAHIRNELHKVIVGQDDAIEQILIAVLAEGHALIEG
                     VPGTAKTLTVKTLSRIIKATFSRIQFTPDLMPSDITGTNVFNIATSNFNLRRGPIFTD
                     ILLADEINRTPPKTQAALLEAMEERQVTIDGEAYPLPPIFTVLATENPIEYEGTYPLP
                     EAQLDRFQLKILLDYPAEEHEREVLARWDAGFNAKRLDEVDLQPLSDPDAIIHCRREV
                     SRARMEVGVQHYAVDIVRRSRVHPFIHYGASPRASVALLLCSKALAAIRGRDFVTPDD
                     VRDVALPVLRHRLTLRAEAELDGVTADAVITDILKLTEVPR"
     gene            2505..>3139
                     /locus_tag="VIJ87_09800"
     CDS             2505..>3139
                     /locus_tag="VIJ87_09800"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY5444740.1"
                     /translation="MKKYLLTLILASLTLCFSATLASAQNTSGVTGVVKDGTGAVVAG
                     ADVKLTDTKTGTEQTTKTNDQGVYSFNKVAPGQGYTISITASGFQTLVINDVALGVGN
                     TETHNAELTIGEVSGTVVVTASNEVTLNTTDASIGNVIGERRMKELPIQIRSSPAALI
                     SLQPGVVGNNVGTGTTNRVGSVTGSRADQGNITVDGIDANDQATGQFAATVG"
BASE COUNT          790 a          797 c          788 g          764 t
ORIGIN      
        1 ccaccttgct gactcaacaa attggggaag tcatgccgtc acgctttgcg gcgaggatga
       61 aagttgtggc gatgaactcc gtcagcgcgg agcatagtgg agaacacaaa ctgccatcag
      121 ttgaaattgt agaaaacgag accgagaaca atctcgccgc gccagtagtt cacatttcag
      181 atcgggatgg ggcgctctta gttgactacg cctatggcgc aggcagaatc actgtccttg
      241 gcgatccata cgtcgtagca aacaacggaa tcagttccca cgataactta cagctggcta
      301 ttaacctggt ctccagcgtt gacggattgg ttgcgttcga tgagtaccac cagggaaagg
      361 gaatcactca aaacgagttt gcgagttatt ttgccggcac tccggtgctg cccatcgccg
      421 cgcaagtaat tcttctcatc cttttcgtgc tttggacccg cgcccgtcgc tttgctcggc
      481 cgctacctct tgtccaggta gatcgccgat caagcctgga gttcgttgcg tctatgtcag
      541 agcttcagga gcggtctcgc gcgttcgacc ttgcggtcga gaacatctat tcacgtacgc
      601 gtcgagtact gtctcgctat gctggagttg attacaacag ttcacggtcg gaggtcgcag
      661 ctcgagttgc aatgcgctcg acgctggacg ctcatggtct cgagacgtta atgcggcaat
      721 gcgaggaaac aatcaacggt gctccaacaa gctggcgtca agcgatcgat ctcgtgcgcc
      781 gtttgcgaga ggttgagcgg gccctgggcc ttcgcatgcg ttcacgtgat gctcgtcagg
      841 ccgccgaaaa gatttaagtt gtccgatatg cggctgtctt gtcgatcacc gaacagcaaa
      901 taaacagtca atagctcatt tggttcactc aacaagctga agcatatcgg acaagtcaac
      961 tttgcacttt aacgagaaac aaagtacaaa gcacaaagtc tgaagctctg ttaccaactc
     1021 tgaaactact ctgctcaata catgtccgaa tacgtctcct ccacagtcgc acacatcagg
     1081 aatgaactgc acaaggttat cgttggtcag gatgacgcaa tcgagcagat cctgatcgca
     1141 gttcttgccg agggccatgc tttaattgag ggtgtacctg gaaccgcgaa gacgctgacg
     1201 gttaagaccc tctccagaat tataaaagcc acattcagcc gaattcagtt cactcctgat
     1261 ttgatgccgt ccgacatcac aggcacgaac gtcttcaaca ttgcgacctc gaatttcaat
     1321 ctgcgccgtg ggccgatctt cactgacatc cttctggctg acgaaataaa tcgcacgccg
     1381 ccaaaaactc aagccgcatt gctcgaagca atggaagaac ggcaagtaac gatcgatggc
     1441 gaagcttatc cacttcctcc gatcttcact gttttggcaa ccgagaaccc gatcgaatat
     1501 gaagggactt atccgctccc cgaggcgcaa ctggatcgtt tccaattgaa aatcctgctg
     1561 gattatccgg ccgaagaaca tgagcgtgaa gtactcgcaa gatgggatgc cggatttaat
     1621 gccaagcgtt tggacgaagt tgatcttcaa cctctatcgg atcctgatgc aataattcac
     1681 tgtcgccggg aagtcagtcg tgcacgaatg gaagtgggag tccaacacta cgcggtcgat
     1741 atcgttcgcc gctcgcgcgt gcatccattc attcactatg gtgcgagccc ccgcgcgtcg
     1801 gtggcgttgc tactttgttc taaggcactg gcagccattc gaggtcgcga ctttgttact
     1861 ccggatgatg tgcgcgatgt ggcgctgccg gtgttgcgtc atcgccttac gttaagagca
     1921 gaggcggaac tggatggcgt tactgctgat gcagtgatta ctgacatcct aaagcttacc
     1981 gaagtacctc gctaataaag ctctcctcgt gacacctgtc cggtgtcaga cgctggaaac
     2041 aacattccac ccagcacctg tcacccgttt ccgaacatac aatcaacata gtcgcacgcg
     2101 aaaaaatgta attctattcg taattttgta ggaccactgt tttcgcttta cgaatttgga
     2161 ttgaagtttc cctttttgga ttgagttatt gaattcaccg cgtacacatt tgtacgagtt
     2221 gtcagtaatt ctctaatcga ttggactatc ctcatcatag gaacattcct tgcttattca
     2281 acagtggtcg ttgtctctcc aattttaacg tttgtctcac gacacaactg aaagtgagag
     2341 ccgagtcgcg gaaagggcgg agctgtgcct tgattaaatc cctcgctcgg gaagtggaag
     2401 atagtgaagt aaacgttgga atcttcgacc aaggagccag tgcttctaca aacggatgca
     2461 ttgggtcttt tcgtctagaa cataaatttt tggaaggagt ctaaatgaag aagtatctac
     2521 ttaccttaat cctcgcatcg ctgacccttt gtttctcagc cacattggcg tcagcacaaa
     2581 acacttcagg agtaaccggt gtcgtaaagg atggcacagg cgctgtagta gcgggtgccg
     2641 atgtgaagtt gactgataca aagaccggca ctgagcaaac gacaaaaacg aacgaccagg
     2701 gagtctattc atttaacaaa gtcgctccag gtcagggtta cacgatcagt attacagcct
     2761 cgggctttca gacactcgtc atcaacgacg tagcacttgg agttggcaat accgaaactc
     2821 acaacgctga actgactatc ggcgaagttt ctggaactgt agtggtaaca gcttcgaatg
     2881 aagttacgct gaacacgacg gacgcgagta tcggtaacgt catcggcgaa cgtcgtatga
     2941 aagagttacc aattcagatt cgcagctcgc cggcagcatt gatcagtctg caaccgggcg
     3001 tggttggtaa taacgttgga actgggacca cgaaccgcgt tggttctgta actggttcgc
     3061 gtgcagacca aggcaacatt accgttgatg gaatcgacgc caacgatcag gcaactggtc
     3121 agtttgctgc caccgttgg
//
LOCUS       DATCGC010001004         1509 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_147522, whole genome shotgun sequence.
ACCESSION   DATCGC010001004 DATCGC010000000
VERSION     DATCGC010001004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1509
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147522"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1502)
                     /locus_tag="VIJ87_09805"
     CDS             complement(<1..1502)
                     /locus_tag="VIJ87_09805"
                     /inference="COORDINATES: protein motif:HMM:NF038122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NF038122 family metalloprotease"
                     /protein_id="HEY5444741.1"
                     /translation="MATVIAAFQRAAAVWTARIKSPVTISINIDYGLNSPGGGAFGSN
                     VLGATSSRRATVDYQGAKTNLLAGSSSAAETALYNLLPNSFVPTDNGNGAVVSANRSV
                     AFALGIPVPGSSSDQNVATMGFNKNFAFDFNPDDGITLNQTDFVAVATHEIGHALGFV
                     SSAGGASTSLVTTWDLFRFRPGTTTATFPTATRIMSIGGGSQVYFTGETFVVNGVPTT
                     ELGLSTGGPSGVTTNGGDGNQSSHWKADEQTGGRYIGIMDPTIAKNVHEETTENDFAT
                     LETIGWNLVSSVAPPPAPPPPTPPSNDNFVNAQTISGSTGSTTGQNVGATRETGEPVH
                     SPDSVVSNRSVWYQWQAPTSSCLSITTAGSAFDTVLGVYTGSSVGALAPIAKNDDVAS
                     NDQSSSVTFDATAGTTYRIAVDGYNNNGSGGDFGSLVLNWGAGVCVVPQIEFTSNEVH
                     TSESSGSVSVAVRRTGNASGSSTVDYATSSGQFHPNCANLDGSALSRCDY"
BASE COUNT          334 a          412 c          409 g          354 t
ORIGIN      
        1 atgtagtcac agcgcgaaag agccgaaccg tcaaggttgg cacagttggg gtggaactgg
       61 ccactgcttg tcgcgtaatc aactgttgat gaacctgaag cgttaccggt tcgtctcact
      121 gccaccgaca cagaaccact gctctcactc gtgtgaacct cattcgaggt aaactcaatc
      181 tggggtacga cgcaaactcc agcgccccaa ttcaacacta gagagccaaa gtctcctcct
      241 gatccattgt tgttgtagcc gtcgacagca atccggtaag tggttccagc agtcgcatcg
      301 aaagtcacac tactggattg atcgttgctg gccacgtcat cgttctttgc aattggagcc
      361 aatgctccga cgctagaacc cgtgtacaca ccgagaactg tatcgaacgc gctgcctgct
      421 gttgtgatgc ttaggcagct actagtcgga gcttgccact gataccaaac ggatcgattg
      481 ctaacgacgc tgtcgggtga atgaacaggc tccccggtct cgcgtgtcgc tcccacattc
      541 tgtccggtag tgctcccggt agagccactt atggtttgcg cgtttacgaa gttgtcattc
      601 gagggaggag ttggaggcgg tggtgccggt ggcggcgcaa cgctgctaac aagattccag
      661 ccgatagtct ccagggtggc gaaatcattc tcagtcgttt cttcatggac gtttttcgcg
      721 atagtcgggt ccatgatgcc gatgtatcgc ccacccgtct gttcatcggc tttccagtga
      781 ctagattggt tgccgtcacc accgttggtc gtgacaccgc ttggcccgcc tgtagatagt
      841 ccgagttccg ttgtcggaac gccattcacg acaaacgtct ctccagtaaa ataaacttgc
      901 gaccctccgc caatcgacat gatgcgagtt gcggttggaa atgtagccgt ggttgtgccc
      961 ggacgaaagc gaaatagatc ccaggtggtc acaagggacg ttgaagctcc tccggctgag
     1021 gagacgaagc caagggcgtg tccgatctcg tgagttgcca cggcgacaaa atcagtttga
     1081 tttagggtga tcccatcgtc aggattgaaa tcgaaggcaa agttcttatt gaagcccatc
     1141 gtcgcaacgt tctgatctga tgacgaaccg gggactggga ttcccagcgc aaacgccacc
     1201 gatctattcg ctgagacgac ggctccattt ccgttatcgg ttggcacgaa ggagttgggc
     1261 agaagattgt aaagcgccgt ttccgcagcg ctcgacgatc cggccagcag atttgtctta
     1321 gctccctggt aatcaaccgt ggcgcgacgt gaacttgtcg cccccaaaac gtttgatcca
     1381 aatgcgccgc cgcctggtga gttcaaaccg tagtcgatat tgatactgat cgtaaccggc
     1441 gactttattc tcgcagtcca cactgcggca gcccgctgaa aggccgcgat aaccgttgcc
     1501 atgtttgga
//
LOCUS       DATCGC010001005         3363 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_447756, whole genome shotgun sequence.
ACCESSION   DATCGC010001005 DATCGC010000000
VERSION     DATCGC010001005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3363)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3363)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3363
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_447756"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..491
                     /locus_tag="VIJ87_09810"
     CDS             <1..491
                     /locus_tag="VIJ87_09810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444742.1"
                     /translation="RSGEDLIFMDRVESAGFRFVHEPTAHVQWDLRPTFLSTFKRFLV
                     YSRNNIRAGLWRQWQATILTRYLMILVLLIGALIVDRRWFWIPLALWLAMIATRAVVS
                     IRRNRFCFPGSFLRNIRRAILVIAILTALDVAAIIGSIQWLMLDWFRWSRKGPVEAGN
                     GA"
     gene            481..1737
                     /locus_tag="VIJ87_09815"
     CDS             481..1737
                     /locus_tag="VIJ87_09815"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY5444743.1"
                     /translation="MGLNGRRALFISYNGMLDPLGQTQVIPYMSELATRGVNITLLSF
                     EKARAFTEEGKVLCDELHEKLRSIGIDWHRLEYHQRPSLPATAYDVFVGTRYAKELVR
                     KNKIELVHARAHIPATIALSLKRHTNLKMIFDLRGLMAEEYVDANHWSKSGLPYRITK
                     ATEQRIFAATDAVVTLTERIWPIIKDWKGLSGRSVHHEVIPCCVDLSVFSFSEQGRRQ
                     RRTELGLEDRFTLVYSGSLDGWYLTEEMADFFACVLQRRPDAHLLWLTTGRLERVQAL
                     MNDRKIGNSSFSVRAVSPADVPSYLSAADAGLSFIKPCFSKIASSPTKNGEYLACGLP
                     LILNSGIGDSDALVDKWQVGALVNQFNEKHYLEIIDKIGTLVRDPDVRKKTRRVATEL
                     FDLRSVGGERYASLYERVLGNGIDGV"
     gene            2128..3267
                     /locus_tag="VIJ87_09820"
     CDS             2128..3267
                     /locus_tag="VIJ87_09820"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEY5444744.1"
                     /translation="MSMRLLALVPSLYDKSPGQRYRLEQWEPLLRERGVDITYAPFEC
                     AELNDVVYKQGQIAKKLRLVVQALGRRAALLSKLTNYDVIYLHREAALLGPAVFERLI
                     HRSGVPIVFDFDDAIFLSYKSPSNGYLSYLKFAGKTKTNCRLAAHVMVGNPYLAEYAR
                     QFNQNVSIIPTTIDTDKYKPVNIEDSSGPLVIGWTGSHSTVQHLDTLRSALAKLAQRE
                     SIRLRVIGTPNYQIEGVEFETIMWRSETEVEDLSAVDIGIMPLPDDNWARGKCGAKAL
                     QFMAMGIPTVCSPVGVNTDIIQDNENGLIANSEDEWIEKLSLLIRSRELRARLGKAGR
                     QTIEQRFSAAVQAPRVHEVLESVVRKSPVAVDSGVQSARATENHG"
BASE COUNT          818 a          745 c          930 g          870 t
ORIGIN      
        1 tacgttcagg cgaggatctg atttttatgg atcgagttga aagcgccggc tttcgatttg
       61 tccatgaacc taccgcacat gttcaatggg accttagacc tacgttcctc tccaccttca
      121 agaggtttct tgtttattcg cgcaacaaca ttcgagcagg attatggcgc caatggcagg
      181 ccaccatatt gactcgctat ctcatgatcc tcgtgcttct gattggtgct ttgatagttg
      241 atcgcagatg gttttggatt cccctcgccc tttggctcgc catgatcgct acacgcgctg
      301 tggtctccat tagacgcaac cgtttctgtt tccccggctc attcctccgc aacattcgtc
      361 gcgcgatcct ggtgattgcg atcctgactg cgctggatgt ggccgcaatc atagggagta
      421 tccagtggtt gatgttggat tggtttcgct ggagccgcaa gggcccggtg gaggccggta
      481 atggggctta acggtcggcg cgccttgttc atctcctaca acggaatgct tgatccactt
      541 ggccagactc aggtgattcc ctatatgtct gagctggcga caagaggggt aaacatcacg
      601 ctgctcagtt tcgagaaagc gagggcgttt actgaagaag gaaaagtact ctgtgatgaa
      661 cttcatgaaa aactgaggtc gatcggaatt gactggcata ggctggagta tcaccagcgc
      721 ccgtcgttgc ctgccacagc ctatgatgtt tttgtcggca ctcggtatgc aaaagaactc
      781 gtgcgcaaga acaagatcga gttagtacac gctcgggctc acattcctgc gacaattgcg
      841 ctttctttga aacggcacac gaacttaaag atgatctttg atttgcgtgg gctgatggca
      901 gaagagtacg tcgacgccaa tcactggagt aaaagtggtt tgccttaccg cattacaaaa
      961 gcgactgagc agcgcatttt cgccgccact gacgcagtcg tcacacttac cgagcgtatc
     1021 tggcccatta tcaaagactg gaaaggccta agcggcagat cggtgcacca cgaggtgatt
     1081 ccatgttgcg tggatctttc ggttttcagc tttagcgaac aagggcggcg ccagcggcgc
     1141 actgagcttg gtttggaaga tcgattcaca cttgtttaca gtggttcact cgatggttgg
     1201 tatctgactg aggagatggc agatttcttt gcatgcgttt tgcagcgacg tccagacgcg
     1261 catttgttgt ggctaacaac cggccgattg gaacgagtgc aggcattgat gaatgatcga
     1321 aaaataggga actcaagttt tagtgttcgt gcagtttcgc cggcagacgt tccttcatat
     1381 ttgtcagcgg cggatgcggg tctttctttc atcaagccat gcttttcgaa aatagcgtca
     1441 tcgccgacca agaatggcga atacctggcg tgtggactgc cgttgatact gaattctggg
     1501 attggtgatt cggacgcgct ggtggataaa tggcaggttg gtgctttggt aaaccaattc
     1561 aatgaaaaac attacctgga aatcatcgac aagataggaa cgctggtgcg cgatcctgat
     1621 gtgcgaaaaa agactcgcag ggtagcgacg gagttgtttg accttcgttc agttggtggg
     1681 gaacgatatg catcacttta tgaaagagta ctgggtaacg gtatagatgg cgtttgataa
     1741 tcagaaatta ctggaatcat tgcgctgtcg aatgatgaaa caggtagctc ctctgaaggg
     1801 tctggccgag gatctaccga tgcagtatgc tggtttttcg tttcgcgttt gtgtaaatga
     1861 tcagttggat cgtttttcag cacccatcga gaatcgttac acgagagcag atgtggggga
     1921 ctggcttaag cgagctggtc tcaatgcctc tcaggtaagg gtgaactttg gttgggttgg
     1981 aacaggaaga aaatgaggag attgcagatt gaagattgat gtccgatatg ctttagcttg
     2041 tcgcgtgcga agtaagaggc gtgttcgata gtcaacgaca ggctaaagca tatcggacaa
     2101 agcatatcgg acaatctgca atcttaaatg agcatgcgtc ttttagcgtt agtgccgagt
     2161 ctttacgata agtcgcccgg gcagcggtac aggctggaac agtgggagcc tcttttgcgg
     2221 gaacgtggtg ttgatattac ttacgcacca ttcgaatgcg cagaactaaa tgacgtagtt
     2281 tacaagcaag ggcagatcgc gaagaaacta agactggtcg ttcaggcact gggtcgacgc
     2341 gcagctctgc tgagtaagct tacaaattac gacgttatct acctccatcg cgaagccgca
     2401 cttctcggtc ctgctgtctt cgagagatta atacaccgca gcggagtgcc aattgttttc
     2461 gatttcgatg atgcaatttt tctctcttac aaaagtccat ccaacggcta tctcagttac
     2521 ctgaagtttg caggcaagac caagactaac tgtcgactgg ccgctcatgt gatggtgggt
     2581 aatccgtatt tggcagaata cgctcgacag ttcaaccaga acgtttcgat cattcctacc
     2641 acaatagata ctgacaagta caaaccagtg aatatcgagg actcttccgg acccttagtg
     2701 atcggttgga ctgggagcca cagcactgtg cagcatttgg atactttgcg cagtgcgctc
     2761 gccaaactgg cgcaacgcga atcgattcgt ctgcgtgtta ttggaacgcc caattatcaa
     2821 atcgaaggtg tcgagttcga aacaataatg tggcgctcag agacagaggt agaagacttg
     2881 agtgcggtcg acatcggtat catgcctttg cccgacgaca attgggcaag aggcaagtgc
     2941 ggagcgaagg ccttgcagtt tatggcgatg ggtattccca cggtttgttc gcctgttggt
     3001 gtgaacaccg atattattca agacaatgag aatgggttaa ttgcaaactc ggaagacgaa
     3061 tggatagaga agcttagtct gttaatacgt tcacgcgaac ttagagcgcg acttggtaag
     3121 gccgggcggc aaactattga acaaagattt tccgcggcgg tccaggcgcc cagggtccat
     3181 gaggtattgg aatcggtggt gagaaaatcg cccgtcgcag tcgattctgg tgtgcaatcc
     3241 gcgcgcgcaa ccgagaatca cggttaatag tattggaagt gaggaatcag tcttggaaaa
     3301 aaggaatgtg ctggtaacag gcggcgctgg tttcattggt tctcatctag tggatgcact
     3361 ggt
//
LOCUS       DATCGC010001006         1303 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_213342, whole genome shotgun sequence.
ACCESSION   DATCGC010001006 DATCGC010000000
VERSION     DATCGC010001006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1303)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1303)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1303
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213342"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(515..979)
                     /locus_tag="VIJ87_09825"
     CDS             complement(515..979)
                     /locus_tag="VIJ87_09825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444745.1"
                     /translation="MKTNKTDISEESQWALAAGDLKHSAQRELAAGVLKQAVQDLRRS
                     LGATSKIERELYFDAYRWLTVNESSSPFSFLNVCQLLNLEPDNVRNDLVGDSSLGALS
                     YWARRCWRAAGRLRTSFRHFFVNDRNGHAQPGDMIFNNASSAAGACLHENVN"
BASE COUNT          308 a          339 c          354 g          302 t
ORIGIN      
        1 gtcgtgcatc tcgcgctgaa gttccgcgta ccggcgaact tcagccgcgg gagctgaata
       61 atgtgtggtg ttcatcagct agcaccagac gttctcgcgc tcgggaagcg gattgaagat
      121 ccgattccaa ccgcgatcag agttaaagat cgacatgttg aggaccagca tccggtcgtg
      181 ccggcggcgc gaccggcaaa accagcgtcg cgatctggcg attttacggt ggctagaatt
      241 taacgtttta atgctgatgg tctcctttcg ttaggctctc ccgggttgaa gccgaacagc
      301 ccgagaacta aaatccagaa gatcgccatc gtgatcatga ccgtattact ggttaactgt
      361 tggaagtgcc ggtgctggtg agtgcgccag cgtgggatgc aatttccatt ggacgcatcc
      421 cgcgatgggc tcgatcccat gctgccattg gccagcaagc ttcggaatac acgaaacagc
      481 aaaatggttg cagggacacg accgaggacg gatgtcagtt aacgttttca tgtaaacatg
      541 ctccagctgc agaggacgcg ttgttgaaga tcatgtctcc tggttgagca tggccattcc
      601 ggtcgttgac aaagaagtgt ctaaacgaag tccgaagtcg gcccgcagcg cgccaacacc
      661 gtcgcgccca gtagctgagt gcgcctaacg acgagtcgcc gaccaggtcg ttgcgaacgt
      721 tgtccggttc caggttcaac aattgacaaa cattgaggaa tgaaaacggc gaagaggatt
      781 cattgaccgt gagccagcga taagcatcga agtaaagttc tcgctcgatc ttgctcgtgg
      841 caccaagaga acgtcgtaaa tcctgcacgg cctgtttgag aacacccgca gccagctcac
      901 gttgggcgga gtgtttgaga tcaccggccg ccaatgccca ttggctttcc tctgagatgt
      961 cagtcttgtt agttttcatt gttttgcgtg acacctttcg acttcaacgc gccatgtttc
     1021 tccttacttc atcagacatg cagctatggc gcagatgatg aagccgagca ccggactaag
     1081 tattacgaac cagaccgctg catttgtgac ggccggcccg tgcgtttcga aagtcatttg
     1141 tgtgtgcata tttgttcttc agccgaacca gagttgataa agaacgctta gaaccgcgag
     1201 cgtcagtccg cccaacacaa aaacaatttc ttcgaagcgg ttgtgcctga cgaccgatgt
     1261 gtcgttcatg acttcaggat cgcgaccaaa caattgatcg cgc
//
LOCUS       DATCGC010001007         2155 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_481784, whole genome shotgun sequence.
ACCESSION   DATCGC010001007 DATCGC010000000
VERSION     DATCGC010001007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2155)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2155)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2155
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_481784"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..834)
                     /gene="groEL"
                     /locus_tag="VIJ87_09830"
     CDS             complement(<1..834)
                     /gene="groEL"
                     /locus_tag="VIJ87_09830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004585059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEY5444746.1"
                     /translation="MAKQITQGEGSRAAILRGVNQLADTVKITLGPKGRNVVLDKKYG
                     SPTITKDGVTVAKEIELKDATENMGAQMVREVASRTSDVAGDGTTTATVLAQAIFREG
                     VKTVAAGANPMALKRGIDKAVERATQEIKKMSKPVSGEMIAQVGTISANGDESIGELI
                     AEAMAKVGKDGVITVEDSKTMETSLEVVEGMQFDRGYLSPYFVTNAETMKAELESPVI
                     LLSEKKITSMRDMLPILEQVAKLGKPILIIAEDVDGEALATLVVNKLRGTINVAAVKA
                     PG"
     gene            complement(900..1229)
                     /locus_tag="VIJ87_09835"
     CDS             complement(900..1229)
                     /locus_tag="VIJ87_09835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020055847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HEY5444747.1"
                     /translation="MTTNIQPLHDRVIVRRIDEGEQVRGGIIIPDTAKEKPQEGEVIA
                     AGLGKYREDGSRQSLDVHAGDRVLFGKYGGSEIKVDGEDLLIMREDEILGIISRAGAA
                     AGGKKSK"
     gene            complement(1630..1890)
                     /locus_tag="VIJ87_09840"
     CDS             complement(1630..1890)
                     /locus_tag="VIJ87_09840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444748.1"
                     /translation="MAVDINEMNGMFVVEWNRMQRHFHIQALGEILKGNLLAAVNGRD
                     SGYVPVAIAQTEGEALEMSKLIQVKLRSLRRTHRVDSSDTLQ"
     gene            complement(1926..2051)
                     /locus_tag="VIJ87_09845"
     CDS             complement(1926..2051)
                     /locus_tag="VIJ87_09845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444749.1"
                     /translation="MSLLPPIDFELASLNGHRGTRNNLRSFGFQDDLVTHESDES"
BASE COUNT          472 a          591 c          488 g          604 t
ORIGIN      
        1 gcccggcgct ttcaccgcag caacgttgat ggtcccgcgc agtttgttta ccacgagagt
       61 tgccaatgct tcaccatcta catcctccgc gataatcaag attggtttac ccaacttggc
      121 aacctgctca agaatgggca gcatgtctct catcgacgta atctttttct cgctcaggag
      181 aatgaccgga ctctcaagtt cggccttcat cgtttctgca ttggtgacga agtagggtga
      241 aaggtagccc cgatcaaatt gcatcccctc gacaacttcc agagacgtct ccattgtctt
      301 cgaatcttcg acagtgatga cgccgtcttt gccaaccttt gccatcgcct cggcaattaa
      361 ctcaccgata ctttcatcgc catttgcgga aatcgtgcca acctgggcga tcatctcgcc
      421 actgactggt ttcgacattt tcttaatctc ttgagtcgcg cgttcgactg ctttatcgat
      481 acctcgcttc agcgccatag ggtttgcacc tgcagccacg gttttcacgc cttcgcggaa
      541 aatcgcttgc gcgagcacgg tggccgtagt tgtaccgtcg cccgcaacgt cgctggtccg
      601 cgatgccact tctcgaacca tctgcgctcc catattctcc gttgcgtctt tgagttcgat
      661 ctcttttgct actgtcactc cgtctttggt gatggtgggg ctaccgtatt tcttatcgag
      721 aactacgttg cgtcccttag gtcctagtgt gattttcact gtgtctgcga gttggttcac
      781 accgcgcaaa attgccgccc gcgatccttc accttgcgtt atttgctttg ccatagtctt
      841 gcctttttct cctaatcaaa attgttgacg caaactaacg gtttgcgtta gcgccagaat
      901 tatttgctct tcttgccgcc ggcagccgca cccgcccggc tgataattcc gagaatctcg
      961 tcctcgcgca tgatcaacag atcttcgccg tcgaccttga tctcggagcc gccgtacttg
     1021 ccgaacaaca cgcgatcgcc agcatgcaca tcgagcgact ggcgcgagcc gtcttctcta
     1081 tatttgccaa ggcctgcagc aatcacttcc ccttcctggg gtttctcttt cgcggtgtca
     1141 ggaatgatga tgccgccacg cacctgctcg ccttcatcaa tgcgtctgac gattacacga
     1201 tcgtgcagtg gttggatatt ggtcgtcata attttttgtc tccttctggt tgactaccgg
     1261 ttgtgggttc tgagaggtag gaaattgatc tgccattatt gcttgcgtta acgaacgctc
     1321 aatatagatg gcaaactaag atcgaaggga aacaccctga actttttggt agtcgagctg
     1381 taggtttcag acgatctggc tggtccagaa ggagctgaga atggagttag ctggtctcgg
     1441 ttccattcga ccttacgctt cctgtgccta tatgtcaaat gcaggataca tttcatatcc
     1501 aacataggca ttgaaagcac agaatccagc ggacatttga acatgacaga cctgaggatc
     1561 tgtgatccat cgttgcggtg taactctctg tgcgcagaga acgaccgctg aaaacgttag
     1621 caatagattt cactggagcg tatctgaact atctacccgg tgagtccggc gcaagcttct
     1681 taactttacc tggatgagct tggacatttc gagggcttct ccctctgttt gtgcaattgc
     1741 gaccggaacg taaccagaat cccgtccatt tacggcagca agaagattgc cctttagaat
     1801 ctcgccgagc gcttgaatat gaaagtgtct ttgcattcga ttccattcaa ctacaaacat
     1861 tccgttcatt tcatttatgt caacagccat aatgctacct ttccgaacaa tcgaagggtc
     1921 tcgaatcagc tttcgtctga ctcgtgagtt actaaatcgt cctgaaaacc aaaagaacga
     1981 aggttattac gagtgccacg atggccgtta agtgaagcca actcaaagtc gatcggtggc
     2041 agtaaggaca tcttatttcc cacgcgcgca ctattcctcc gcagtgatga ctatgcattc
     2101 tcatatcgat gcttattctc ttgcccccaa aaagggtgtc ctccaaacca ggtac
//
LOCUS       DATCGC010001008         1363 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_281165, whole genome shotgun sequence.
ACCESSION   DATCGC010001008 DATCGC010000000
VERSION     DATCGC010001008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1363)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1363)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1363
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281165"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1335)
                     /locus_tag="VIJ87_09850"
     CDS             complement(<1..1335)
                     /locus_tag="VIJ87_09850"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAT domain-containing protein"
                     /protein_id="HEY5444750.1"
                     /translation="MDDKVGQGDILSGMGSAYLRQKNYADALDSYQKALVLFDTAAAK
                     DRMADVLSRVAETFIAQNEFTKALSSAESSIAIAKQIDDGNVLWYAQLLAAKAHRGLD
                     HASVALQSVTESIGTVESLRERPPSLAIGDHNSYLPYLSGVDLLMSQHRPGEAFDYAE
                     RAKTQYLIELLRTSNAASTKGLTVTEQIEERRLAGEVASSELQLDRISELRSANETRR
                     AELRERLKQSQMAYREFRKKLSSDHPGLKIDRGENAALTVNEMGALVGDSRTALLEYT
                     ITERNTYLFVLTADRPEGTKTSRRRLPLSLNLKVYPLDVNGNELSTKLREFERLLSTK
                     SDDSQQSARDLYDMLLRPAEDQLVLKTKLVIVPDGVLWRLPFEALQPADDHYVVDQMQ
                     VSYAQSLSILRDLRSRRVPVNRLKASFVGIGNPLLSNEFKARVQLGYPDTILE"
BASE COUNT          305 a          370 c          339 g          349 t
ORIGIN      
        1 ctccaagatc gtgtctggat aaccgagttg cacccgcgct ttgaattcgt ttgagagtag
       61 tggattgcca atccccacaa acgatgcttt caaacgattg accggcactc gtcgcgagcg
      121 caggtcgcgc aagatagaaa gagactgcgc atacgagacc tgcatctgat caactacata
      181 atggtcatcg gccggttgca gtgcttcaaa tggcaaacgc caaagcactc catcaggaac
      241 tatgaccagc tttgtcttta acaccaattg atcctctgct ggtctaagca gcatgtcgta
      301 cagatcccgc gcagactgtt gagagtcgtc gctctttgtc gacagtaacc gctcaaactc
      361 ccttagcttc gttgacaact cattaccatt cacgtccagt ggatagactt tcaggttgag
      421 agacagtggc agtcttctgc gcgaagtctt tgttccctcg ggccgatcag cggtcaaaac
      481 aaacaggtag gtgtttcgtt cagtaattgt gtactcgagc aacgcagttc gagaatcacc
      541 taccagcgcg cccatctcgt tcaccgttaa ggcagcgttc tctcctctat ctatcttcag
      601 accaggatgg tcgctcgaca gtttctttct aaactctcga taagccatct gactttgttt
      661 gaggcgttcg cgcagttctg cacgtcttgt ttcgttggcg ctacgaagtt cggagatgcg
      721 gtctagttgg agttcactcg aagcgacttc acctgccagg cgtcgttctt caatctgttc
      781 cgtgacagtc aatcctttcg tggaagccgc gttgctggtt ctcaagagtt caatcaagta
      841 ctgagtctta gctcgctctg cataatcaaa cgcttcaccg ggacgatgct gactcattag
      901 cagatctact cccgacaggt agggcaagta gctgttgtga tcgccgatcg caagactggg
      961 cgggcgctcg cgcagagact cgaccgtccc aatcgattcc gtaactgact gtagagcgac
     1021 tgaggcgtgg tctaaaccgc gatgagcttt cgcggctaac aactgcgcgt accaaagcac
     1081 attcccatcg tcgatctgtt tagctattgc gatcgaactt tccgctgagc tcagtgcctt
     1141 ggtgaattca ttttgagcga tgaaggtttc ggcaacgcgt gacagaacat ctgccatccg
     1201 gtctttggcc gcggccgtgt cgaatagcac taacgctttt tggtagctgt ccaacgcgtc
     1261 tgcgtagttc ttttgacgaa gataggccga acccatacca gagagaatgt cgccctgtcc
     1321 aaccttgtcg tccatcgctt cacgtaagac gagagcgcgg cgg
//
LOCUS       DATCGC010001009         1123 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_181602, whole genome shotgun sequence.
ACCESSION   DATCGC010001009 DATCGC010000000
VERSION     DATCGC010001009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1123
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181602"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(448..>1123)
                     /locus_tag="VIJ87_09855"
     CDS             complement(448..>1123)
                     /locus_tag="VIJ87_09855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444751.1"
                     /translation="FTRWGGYGGIPGCSIGCAAPFPQNGYVTSIDIYLEAESITRGND
                     TRFDFSSAVNDPAGNHRRDFVFNAGFYNDAVAPGTGPRFVISASNNAGRDSSFPRNPG
                     RDPFTIIDDGWYTFQHKFLDNGLGVLTVELTIKDAAGVTLHTWNLSDPTDVINTTVGS
                     NRYGFFAQQELTPLAIDNSSRVDILSQPADKEQCKKDGWKLVVNGAGAPFRNQGQCVK
                     FVTTGN"
BASE COUNT          263 a          285 c          291 g          284 t
ORIGIN      
        1 agaaggcagc aaagaagttc tttggcaagc tactaaaagg attgcgctac gttccgcgtg
       61 tgatcgtcac cgataagctg agaagctaca gtcttcgcac ttcaatgttg ggagacatct
      121 gtacagcgct cgtggttacc gagcggtgat gaaattgaga cgcgccgtgt gggcacaggc
      181 gatttgttcg agatagttgt ttattggctt ggttacaaaa cttggtttga tcttgaacgt
      241 gtaggtactg ttctttccgc ctgagttaag ttgaccgtgc cttcgcgaac tctcgcttcg
      301 tttaatgacg gagcatcaag cactcgtcac ccaagttggt actgatctga aaaggcccgt
      361 caagttacgg gccttttcga gtacctccgc ggcctctcaa ccacggtcat agttggggca
      421 ttatcgggta cagggtcagg gaggaactca gttgccagta gtcacaaact ttacacactg
      481 gccttggttt ctgaacggtg cgcccgcccc atttacaact agcttccagc cgtccttctt
      541 gcactgctcc ttgtcggctg gttggctcag gatgtcaact cgactgctat tatcgattgc
      601 caaaggtgtc aactcctgct gagcaaagaa tccataacgg ttcgaaccaa cagtagtgtt
      661 gatgacgtca gtaggatcgc tgaggttcca agtatgtagc gtaacaccag cagcatcctt
      721 gatggttagt tcgaccgtca acacacccaa accgttgtca agaaacttgt gctgaaacgt
      781 ataccagccg tcgtcgataa tcgtgaaagg atccctaccc gggttcctcg ggaacgaact
      841 gtcgcgtcca gcgttgttgc tcgcactaat tacgaagcga ggaccggttc caggagccac
      901 ggcgtcatta taaaacccgg cgttgaagac gaaatcacga cgatggtttc cggctgggtc
      961 attgaccgcc gaactaaaat caaagcgcgt gtcgtttcct cttgttatgc tttccgcttc
     1021 gagatagatg tcgatcgagg tgacgtagcc attctgagga aacggcgcag cgcagccaat
     1081 tgaacatcct gggattccgc cgtagcctcc ccatctggta aat
//
LOCUS       DATCGC010001010         1064 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_447821, whole genome shotgun sequence.
ACCESSION   DATCGC010001010 DATCGC010000000
VERSION     DATCGC010001010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1064)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1064)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1064
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_447821"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..646)
                     /locus_tag="VIJ87_09860"
     CDS             complement(<1..646)
                     /locus_tag="VIJ87_09860"
                     /inference="COORDINATES: protein motif:HMM:NF012720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 3"
                     /protein_id="HEY5444752.1"
                     /translation="MVTSTRTVTAKTTGSGPKRPGPNGNGRNGHSHFEPDANANRYRV
                     GMWVALASISMLFTALSSAYIVRAGSSNDWVSIAMPKVLLLSTVLILVSSITLEVSRR
                     NLKSAAFSGYGRWLLITMFLGLGFLASQLLAWKQLARQGVYLVSNPHSSFFYLLTAVH
                     AVHLICGLLALIFLWVRSRFKKELKVTPRGQAVADAVTIYWHFMDALWIYLFLLL"
     gene            complement(630..>1064)
                     /locus_tag="VIJ87_09865"
     CDS             complement(630..>1064)
                     /locus_tag="VIJ87_09865"
                     /inference="COORDINATES: protein motif:HMM:NF012343.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HEY5444753.1"
                     /translation="KFHFWVTFIGVYCIFVPMHVMGLVGMPRRYSQFTEYEFLHGLHP
                     LVLFVSISAIITITVQLVFYFNVIWSIFKGAKAPDNAWDATTLEWNTASPPPHDNFAG
                     ILPTVYHGPYEFAVPGAPNDFVMQTDAAVEVPSGNGHNGHQH"
BASE COUNT          292 a          270 c          280 g          222 t
ORIGIN      
        1 ataggagtag aaataggtag atccaaagag cgtccatgaa atgccagtaa atcgtaactg
       61 catcggcaac agcctgaccg cgtggcgtta cctttagttc cttcttgaag cgtgatcgca
      121 cccaaaggaa gatcaatgcg agcagaccac aaatcaagtg aacagcatgt acggcggtca
      181 aaagatagaa gaaagaactg tggggattgc tgacgaggta gacaccttgt cgggccaact
      241 gcttccaagc tagcagttga gacgcaagaa accctagccc aaggaacatc gtgatcagca
      301 accagcgacc gtagccactg aaagcagcag acttcagatt gcgtctcgaa acttcgagcg
      361 taatgctact gaccaaaatc agcaccgtac tcagcaacaa caccttgggc atagcaatgg
      421 agacccaatc gttggacgag ccggctcgaa cgatataggc actgctgagt gcggtaaaca
      481 acatcgaaat cgaagcgagc gcgacccaca tccccacgcg gtagcgattg gcgttggcat
      541 cgggttcgaa atggctgtga ccattccttc cgttaccgtt tggtcccgga cgctttgggc
      601 ctgacccggt ggtcttcgct gtaactgttc tagtgctggt gaccattgtg gccatttccg
      661 cttggtacct ctaccgctgc atcagtctgc ataacgaaat catttggagc acctggtact
      721 gcaaactcgt agggtccgtg gtaaaccgtc ggcaagatgc cggcgaaatt gtcatgtggt
      781 ggcggcgacg ccgtattcca ttcgagcgtc gttgcgtccc aggcattgtc gggagctttt
      841 gcacctttga agatgctcca gatgacattg aagtagaaga ctaactgcac cgtaattgtg
      901 atgattgccg agatcgacac aaacagcact aacggatgca ggccatgaag gaattcgtac
      961 tcagtaaact gtgaatagcg acggggcatt ccgacgagtc ccatcacgtg catcggcaca
     1021 aaaatgcagt agacaccaat gaaggtcacc cagaagtgaa actt
//
LOCUS       DATCGC010001011         1493 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_447832, whole genome shotgun sequence.
ACCESSION   DATCGC010001011 DATCGC010000000
VERSION     DATCGC010001011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1493)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1493)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1493
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_447832"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..565)
                     /locus_tag="VIJ87_09870"
     CDS             complement(<1..565)
                     /locus_tag="VIJ87_09870"
                     /inference="COORDINATES: protein motif:HMM:TIGR03914.1"
                     /note="This protein belongs to the uracil DNA glycosylase
                     superfamily, members of which act in excision repair of
                     DNA. However, it belongs more specifically to UdgX branch,
                     whose founding member was found to bind uracil in DNA
                     (where it does not belong), without cleaving it, appears
                     to promote DNA repair by a pathway involving RecA, rather
                     than base excision; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UdgX family uracil-DNA binding protein"
                     /protein_id="HEY5444754.1"
                     /translation="MTTRKSENTSADDLIPKQLTFLSLKAAAAECKACDLWKKGTQTV
                     FGEGRRRANVIFVGEQPGNKEDLTGKPFVGPAGRLFDEALAEAGIDRKQTYVTNVVKH
                     FKWEPRGKRRIHKKPNAVEINACRPWLEAEIALVKPQVIVALGATAAQALLGPKFLVT
                     KQRGKFLESTLAPYIMATVHPSSILRAP"
     gene            638..1399
                     /locus_tag="VIJ87_09875"
     CDS             638..1399
                     /locus_tag="VIJ87_09875"
                     /inference="COORDINATES: protein motif:HMM:NF012381.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444755.1"
                     /translation="MRVAFSKAEIESDIASRFENAFRLQEKKAALTLATGVVEVDGLS
                     GGIPRGALSEVFGPASSGRTSLLLSILSYATTHDEICAVVDINDTFSPVAAAASGIDF
                     DRLLWIRCGANLEHGFKATDLLLNAGGFGLVVLDMGDVAGKDARRIISSWWYRFRRTV
                     ENKPTAIVVMSAEACTRSCSSLTLELNGIAEWVRTDGEGEETTKGNVLPIRHVTRSPL
                     VAHANLLRMNSIKVNRRRPITGGVNESRFSSSNYF"
BASE COUNT          367 a          322 c          393 g          411 t
ORIGIN      
        1 ccggagcgcg cagaatagag gagggatgaa cggtggccat tatgtaagga gcaagagttg
       61 attctaaaaa tttgccgcgt tgtttggtga cgagaaactt tggaccaaga agagcctgtg
      121 ctgcggttgc acccagggca acgatcactt gaggtttcac taaagcgatc tccgcctcga
      181 gccatggccg acaggcattg atctctacgg cattcggctt tttatgaatg cgacgtttac
      241 cacgtggctc ccatttgaag tgtttgacaa cattcgtaac gtaagtctgt tttcgatcga
      301 taccggcttc tgccagggct tcatcgaata gtctccctgc tggaccaacg aatggtttgc
      361 cagttaggtc ttctttgtta ccaggttgtt caccgacgaa gatcacgttt gctcgacgcc
      421 ggccttcgcc aaaaacagtt tgcgttcctt ttttccaaag gtcgcaagct ttgcactcgg
      481 cagctgcggc tttgagagat agaaatgtca gctgcttcgg aattaagtcg tctgcggaag
      541 tgttttcaga cttacgcgta gtcattgtta tccctcttaa ttgagagaca ttagtaacaa
      601 cgggtttggg aaatgtgtcg acgtagtaat aaagaatatg cgagtagcat tttcaaaagc
      661 tgaaattgaa tccgacattg ccagtcggtt tgaaaatgct tttagactcc aggaaaagaa
      721 agctgcttta acactcgcga ctggcgtagt tgaagtcgat gggttgagcg ggggcattcc
      781 tagaggcgca cttagtgaag tcttcggtcc ggcgtcgtcc gggcgtacca gtttgttgct
      841 atcaatactt tcttatgcaa ctactcacga tgaaatttgc gcggtagtcg acatcaatga
      901 caccttttca ccagttgccg ccgccgcgtc gggaattgat ttcgataggt tgctgtggat
      961 tcgttgtggc gccaatctcg aacatggttt caaagcaaca gatcttttac taaacgctgg
     1021 tggatttgga ttggtggtac ttgatatggg tgatgtggca gggaaagatg cacgccggat
     1081 tatatcgtca tggtggtatc gctttcgccg tacagtggaa aataaaccga cagcgatagt
     1141 tgtcatgtct gccgaggcat gtacccgatc ctgctcttcg ctaacgttgg aattgaatgg
     1201 tattgccgag tgggtaagaa cggatggcga gggtgaagag acaactaaag gcaatgtatt
     1261 gccaatccga catgtcactc gctcgccgtt ggtagctcac gcaaatcttt tgcgaatgaa
     1321 ctcgataaaa gtgaatcgac gtcgaccaat cacgggaggt gttaacgaaa gtcgattcag
     1381 tagtagcaac tacttttgaa attcaatggt ctgccttaat tcagaatgaa ttaccttgac
     1441 caataggatt taggatttcg cggcttggcc gctttccctt gcggaaagcc tct
//
LOCUS       DATCGC010001012         2521 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_481824, whole genome shotgun sequence.
ACCESSION   DATCGC010001012 DATCGC010000000
VERSION     DATCGC010001012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2521)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2521)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2521
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_481824"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..683
                     /locus_tag="VIJ87_09880"
     CDS             <1..683
                     /locus_tag="VIJ87_09880"
                     /inference="COORDINATES: protein motif:HMM:NF012529.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DnaA/Hda family protein"
                     /protein_id="HEY5444756.1"
                     /translation="NALYEAGRQIVMTSDRSPAEIPGIEARLISRFQWGMVADIELPD
                     LEHRIAILQHKAQMDHLEHTIPEPVIRFVAEHIRSSVRELEGSVIKLLAYASLKHRDI
                     SIDLARAALRDKLRLLADSNTESFDSGLSASVIQKVVAQEWGVTPEGLRSKTRTKTLT
                     VPRQAAMLLCREILGLQLVEIGNAFGGRDHSTVIHSIERATTLLNEDPVFQQHVNKLR
                     IKLQPASN"
     gene            885..2000
                     /gene="dnaN"
                     /locus_tag="VIJ87_09885"
     CDS             885..2000
                     /gene="dnaN"
                     /locus_tag="VIJ87_09885"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HEY5444757.1"
                     /translation="MRFTISREKLQEGLTAVAASIPAKTTLPVLANILVETTERGIRL
                     SGTDLDIAVSTEVSADVETPGAITIPAKKLSEIARELPPAPVKIGAMGEQRITLECGR
                     SRFKLLGLPRDEFPTFPQVRFQDSWRVRSGDLQKLISHTSFAVSTEESRPILNGVLWE
                     LRADRMRMVATNGHRLTRMDLPTTGASSPASGDLIIPPKALDQVRRLFPAEEELEIAQ
                     GDNHLGFRSPFTSVFTRLIEGPYPNYEQVIPRDNDRVAISDKVALISALKRMSVIASD
                     QTHRIRLSFNTALLRFSVQTPDLGEAQDELPIRFTGDPIDIGFNANYLLEILRYIPTD
                     EVRLTLKAPERAVTVEPENWSDSASYLCLVMPLRLMD"
     gene            complement(2213..>2521)
                     /locus_tag="VIJ87_09890"
     CDS             complement(2213..>2521)
                     /locus_tag="VIJ87_09890"
                     /inference="COORDINATES: protein motif:HMM:NF025063.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integrase core domain-containing protein"
                     /protein_id="HEY5444758.1"
                     /translation="GLVHHSDRGVQYACTAYREVLAAHGLAASMSRRGDCWDNAVAES
                     FFATLERELIDRWDWRTRAEAATALFDYIATWYNTRRRHSTLDYQSPAAYERQLATAA
                     "
BASE COUNT          614 a          657 c          618 g          632 t
ORIGIN      
        1 tcaacgcctt gtatgaagca ggccggcaga tcgttatgac tagcgatcgt tcaccagcag
       61 aaataccagg aattgaggca cggctaatta gccgatttca atggggaatg gtagcagata
      121 ttgagctccc cgatcttgag caccgaattg ctatcctaca gcacaaggct cagatggatc
      181 atcttgagca taccattcct gaacctgtga ttcgatttgt ggcagagcat attcgctcga
      241 gtgtccgaga actcgaggga tcagtcatca agctgctagc atacgcctcg ctaaagcatc
      301 gtgatatctc aattgatctc gctcgcgcag cgctacgtga caagctacgt ctactagcgg
      361 attcaaacac cgaatcattt gattcgggtc tttctgctag cgtcattcag aaagttgttg
      421 ctcaagaatg gggagtaact cctgaagggc taagatcaaa gacacgaaca aagacgctaa
      481 ccgtaccacg tcaggctgct atgctccttt gccgagagat tctcggccta cagctcgttg
      541 agattggaaa cgcattcggc ggacgtgatc actcaactgt tatccacagc attgagcgcg
      601 ctacaactct tctcaacgag gacccagtct ttcaacagca cgttaacaaa ctccggatta
      661 agttgcagcc tgcttctaat tgatttcttg gagtcttcta caaactccat atagcctcaa
      721 catcgaacct acatcaggag tacagctcta agtatctttt catcatgtcg ttatagcgtt
      781 attcaacata tctacaccgc ctgctgttat tactagttct ttctttatct agaactagtt
      841 atagcaggcc ccgctcccac gtggggaact cactcggagt ccgaatgcgc ttcacaatat
      901 cgagggaaaa gttgcaggag gggcttactg ccgttgcagc tagtatcccg gctaagacga
      961 ccctgcccgt tcttgcaaat attctcgtcg agacaacaga acgaggaatc agactctcgg
     1021 ggaccgatct cgatatagct gttagtaccg aggtcagcgc agacgtggag acacctggag
     1081 caattacaat ccctgctaaa aagctgtccg aaattgctcg ggaacttcca cctgctcctg
     1141 tgaaaatagg agcaatgggc gagcaaagaa ttacgttgga atgtggccgc tcgaggttca
     1201 agctattagg actacctcga gatgaatttc caacgtttcc tcaagttcgg tttcaggaca
     1261 gttggcgagt tcgctcagga gatcttcaga agctcatctc acatacttcg tttgcagtat
     1321 caacggagga aagtcgtcca atcttgaatg gtgttctgtg ggaattacga gctgaccgaa
     1381 tgcgtatggt ggcgacgaac ggtcatcggc taactcgaat ggacttgcca actactggag
     1441 caagctcacc agctagtggg gatttgatca tcccaccgaa agctcttgat caagtccgac
     1501 ggctctttcc ggcggaggaa gagctagaaa ttgcccaggg ggataatcac ctaggattcc
     1561 gttcaccctt cacatctgtg tttacacgat tgattgaagg gccgtatccg aactatgagc
     1621 aagtaattcc tcgtgacaat gaccgagtag ctatcagtga caaggtagct cttattagtg
     1681 cattgaagcg aatgtctgtg attgcttctg atcaaacaca ccgaattcgt ttgtcattca
     1741 acacagcctt gctccgcttt agcgttcaga cacctgatct tggtgaagct caggacgaac
     1801 taccaattcg ttttactggt gatccgatcg atattggttt caatgcgaac taccttctcg
     1861 aaattcttcg ttacatccct actgatgaag tccggcttac actgaaagca cctgaacgtg
     1921 cagtaacagt tgaaccggaa aactggtcgg attctgcatc ctatctatgt cttgttatgc
     1981 cactccgctt aatggactag ttcatagctc gagttggagt gctaaagaca ttacagtaga
     2041 tcgtctgtct tatgctacac tgaactctcg tggaccgaat gctgtctagc tttatatccg
     2101 cggttcgcag cttacgcttg gggtaggcga tacatgtctt gaagcttacg ctgctgccac
     2161 cgatgaccgc ttggtcttga cccggtttag tggacaccgg ggataaggat cgttatgcag
     2221 ccgttgccag ttggcgctca tacgccgccg ggctttgata atcgagggtg gaatgccgcc
     2281 gccgcgtgtt gtaccacgtc gcgatgtagt cgaacagtgc cgtcgccgcc tccgcccgcg
     2341 tccgccagtc ccagcgatcg atgagctccc gttccagcgt cgcgaagaaa ctctccgcca
     2401 ctgcgttgtc ccaacagtcg ccgcgccggc tcatgcttgc ggcgaggcca tgcgcggcga
     2461 gcacctcgcg atacgccgtg cacgcgtact ggacgccgcg gtccgagtga tggaccaacc
     2521 c
//
LOCUS       DATCGC010001013         2238 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_213382, whole genome shotgun sequence.
ACCESSION   DATCGC010001013 DATCGC010000000
VERSION     DATCGC010001013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2238)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2238)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2238
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213382"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..823)
                     /locus_tag="VIJ87_09895"
     CDS             complement(<1..823)
                     /locus_tag="VIJ87_09895"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine dehydratase"
                     /protein_id="HEY5444759.1"
                     /translation="MLTIDMINAARDRIASRIHRTPVVTSRLFNEVAGKQVFFKCENL
                     QRAGAFKIRGATNKIQSLTEEEKRRGIVAFSSGNHAQAVALAGKEAGVRVVVAMPDDA
                     PKAKVAATRDYGAEIIFYDRHKEDREKFALDLAERERLVMVPPYDDELIMAGQATCGL
                     ELLEDVPDLDCLLAPCSGGGLFAGIALAAKEVKPDIKLFPVEPDTADDTKQSFDKGER
                     VSIPPPPTIADGLRVQVPGRLTFPIVQKLAEDVLTVSDDEILATIKFMLFRMKLLV"
     gene            complement(858..1529)
                     /gene="lipB"
                     /locus_tag="VIJ87_09900"
     CDS             complement(858..1529)
                     /gene="lipB"
                     /locus_tag="VIJ87_09900"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: protein motif:HMM:NF010925.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033819 - lipoyl(octanoyl) transferase
                     activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HEY5444760.1"
                     /translation="MMKERNLLVQRLGRIDYEKALAVQKETELLVKTHQQSDTLLLLE
                     HPHTLTIGRRGDSSSVLLNEEELRARNVTLFETNRGGKVTYHGIGQVVGYPIINLSPE
                     REDVHRYVRDLEEVLIRTMSDFGIDSFRIEGLTGVHTSRGKIAAIGVHIARWVTTHGF
                     ALNVNTDLSYFDLIIACEGEPVTSMETLLGDTTELGSVEDRLIENFASVFSMTPCEST
                     LPMTV"
     gene            1757..>2238
                     /locus_tag="VIJ87_09905"
     CDS             1757..>2238
                     /locus_tag="VIJ87_09905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444761.1"
                     /translation="MKRTILVTLSTLLITSGTLAQTRGRSASPKPKPTPAAAQKTNQV
                     RTAGATRVGDQIKFLTKFIYLLGGATSNIASVDESIRRNQAGPDAAQKNSAAKAQVRS
                     GIEGFREALDKLEIDFRNTPELQPYYIKLAGVAAGAADAEQRATTEQFDAAGRSLLGV
                     V"
BASE COUNT          561 a          577 c          561 g          539 t
ORIGIN      
        1 cgaccaatag cttcatccga aacaacatga acttaatagt ggctagaatt tcatcgtcac
       61 taacggtcag tacatcctcg gccaacttct gcacaatagg aaatgttagc ctgccgggaa
      121 cttgaactcg taacccgtca gcaatagtag gtggcggcgg aatcgaaact ctttcacctt
      181 tgtcgaacga ctgcttggta tcgtcggcgg tatctggctc gaccgggaaa agttttatat
      241 cgggcttcac ttctttggct gccaacgcga tgccggcaaa caatcctcct ccgctacacg
      301 gcgccaacag gcaatctaaa tctggcacat cttccagtag ttcaagtcca cacgtcgcct
      361 gaccggccat tatgagctca tcgtcgtacg gtggaaccat gacgagtcgt tcacgttcgg
      421 caaggtcgag agcaaacttc tctcgatctt ctttgtgtcg atcgtagaaa atgatctctg
      481 caccatagtc acgagtcgcg gctactttcg cctttggagc atcgtcaggc atcgccacaa
      541 ccacacgcac acctgcttct tttccagcca gggcaaccgc ctgcgcgtga ttaccagaag
      601 agaacgcgac gatgccacga cgtttctctt cctcggttag tgattgaatc ttatttgtcg
      661 cgccgcgaat cttgaacgca ccggcacgtt gcaggttttc acatttgaag aacacctgtt
      721 tgcctgcaac ttcattaaaa agacgagagg tgactactgg cgtacgatga atccgcgaag
      781 cgatgcggtc gcgagccgcg tttatcatgt cgattgttag cattgggttg ttatccaggc
      841 cacagatata gagacgatca gacagtcatg ggcaatgtag attcgcaagg tgtcatcgaa
      901 aataccgagg cgaagttttc gatcagacga tcttccacgg agcctaattc tgtcgtgtcg
      961 cccaacaaag tttccattga agtaaccggt tcaccttcgc aggcaatgat caaatcaaag
     1021 tagctcaagt cggtgtttac attcagggca aagccatggg tcgtaaccca acgcgcaatg
     1081 tgaacgccta tcgcagcaat ctttccacgt gaagtgtgta cacccgttaa gccttcgatt
     1141 cgaaagctgt cgattccgaa atccgacatg gtccgaatca aaacctcttc gaggtcccga
     1201 acatatcgat gaacgtcttc acgctccggg ctaagattga taatcggata gccaaccact
     1261 tgtccaatgc catggtaagt aaccttgcca ccgcgattgg tctcgaagag tgttacattt
     1321 cttgctcgca gttcctcttc attgagtagt acagacgaac tatcgcctcg tcgtccgatt
     1381 gtcagcgtgt ggggatgttc cagcaaaaga agcgtgtcgg attgttgatg cgttttaacg
     1441 agcagttcgg tctctttttg gacggccagg gctttctcgt agtcaattcg ccccagcctt
     1501 tggaccaaca ggtttctttc tttcatcatg caaccagaac gttatctttt tgcgtcattc
     1561 tagcagcagg atggatgaaa gatggaacgc ggaaggttga gcaggatttc ggactgcaga
     1621 tgagacatgg tcgcagattg tgaggtcacg ttccgacctc gtgctataaa cattgtgctc
     1681 ctcctggagc aaaagattct ctcggtgcac tactatcagc tggagcttga gatcagacga
     1741 agaggagacg ctaactttga aacgcacgat actggttact ttgagcacac tattgataac
     1801 ttccgggaca ctagcccaaa cgcgaggcag gtcagcatca cctaaaccga agccgactcc
     1861 tgcggctgcg caaaaaacga accaggttcg cacggccggg gcaacgcgcg tcggagatca
     1921 aattaaattc ctgacaaagt ttatctactt gttgggtggc gcaacgagca acatcgcgtc
     1981 tgtcgatgag tcgataagac gaaaccaggc tggtcctgac gccgcgcaga agaatagtgc
     2041 tgccaaggct caagtccgat cgggtatcga gggatttcgc gaagcgctcg ataagttaga
     2101 gatcgatttc cgcaacacgc cagagcttca gccttactac atcaagctgg cgggagttgc
     2161 tgctggagcg gcggacgcag aacaaagggc aactacagag cagtttgatg ccgccggcag
     2221 atcactgttg ggagttgt
//
LOCUS       DATCGC010001014         1854 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_147610, whole genome shotgun sequence.
ACCESSION   DATCGC010001014 DATCGC010000000
VERSION     DATCGC010001014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1854)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1854)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1854
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147610"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..926)
                     /locus_tag="VIJ87_09910"
     CDS             complement(<1..926)
                     /locus_tag="VIJ87_09910"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY5444762.1"
                     /translation="MAPITDQSRISRPHRLPAYADEPVTLVDVFKRVAHKHKRSDTLN
                     FKKNGQWVSISSDEMLERARRIAGGLYAIGVRRGDRVALLSESRAEWTLTDAGCIFSD
                     AIDVPIYPTLTPPQVRYILKDSGARVLVLANREKFDELVEVLKECPEVQTIVVFDPEG
                     VDDIDAITLEQLEARGQQLILEQPDLVDRLSSETNAADLATIIYTSGTTGEPKGVMLS
                     HSNLVTNLVDSSGHLNLGEQDTALSVLPLSHVFERQAMYMYLHQGMAVYFAESLQTIG
                     PNLREVHPTILVGVPRIFEKIYDRIRERAAERG"
     gene            complement(932..1546)
                     /locus_tag="VIJ87_09915"
     CDS             complement(932..1546)
                     /locus_tag="VIJ87_09915"
                     /inference="COORDINATES: protein motif:HMM:NF019958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEY5444763.1"
                     /translation="MRTARSINSVRPPTGDKREAILRAAITVFAHNGYFNSKVADIAR
                     EAGVADGTVYLYFKSKEDILHSVFDRSVDEAIAEAKKIVETINDPKEKLRQIALLHLE
                     RLGDDRDLAVVFQVELRGSTKFMEEFSAAGFAEYLALIRSTFEEGQQAGVFRADLNAK
                     VVAKILFGALDEMATNWILSKRRYKLAPMADQVLDIFLNGVNAE"
     gene            1665..>1854
                     /locus_tag="VIJ87_09920"
     CDS             1665..>1854
                     /locus_tag="VIJ87_09920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444764.1"
                     /translation="MNEPSLSFVFSLDCCPALRKMLMGALLKFYREGRRSVPLRGSAW
                     LGHKQIGTAQYKKKATRYR"
BASE COUNT          436 a          470 c          511 g          437 t
ORIGIN      
        1 ccccgctctg ctgcacgctc acgaatccgg tcgtagatct tttcgaagat gcgcggcaca
       61 ccaaccagaa tggtgggatg aacctcgcgg aggtttggac caatcgtttg cagcgactca
      121 gcaaagtaga cagccattcc ctggtgcagg tacatgtaca tcgcctggcg ttcaaacacg
      181 tgtgagagcg gcaacaccga aagcgctgtg tcctgttcgc ccaaattgag atggcctgag
      241 gagtcgacca ggttagtcac cagattggag tgagacagca tcactccctt cggctcaccg
      301 gtcgtcccgg atgtgtaaat gatcgtggca agatcggcgg cattggtttc actcgacaaa
      361 cgatccacca gatcaggttg ttcgagtatg agttgttgac ctcgtgcttc gagttgttca
      421 agagtgattg catcgatgtc gtcgactccc tcgggatcaa agacgactat cgtctgcact
      481 tcaggacact ctttcaaaac ctcgaccagc tcatcgaatt tttcgcggtt agcaagaacg
      541 agcacacgcg cgcccgagtc tttcaagatg taacgaacct ggggcggtgt tagggtcggg
      601 tagatgggaa catcgatcgc gtcggagaaa atgcagccgg catcggtcag cgtccattcc
      661 gcacggcttt ccgagagtaa ggcgacacga tcgccgcgac ggaccccgat ggcgtaaagc
      721 ccgccggcga ttcgtcgcgc gcgctcgagc atttcatccg aagagataga gacccattga
      781 ccgttctttt tgaagttgag cgtgtcagat cttttgtgtt tgtgcgcaac tcgcttgaag
      841 acgtcaacga gcgttaccgg ctcgtccgca taggcaggta ggcgatgcgg gcggcttatc
      901 cgcgattgat cggtaatcgg ggccacctca ttcactcggc gttaactcca ttgagaaaaa
      961 tgtcgagcac ttgatctgcc atcggcgcga gtttgtagcg acgtttcgag aggatccagt
     1021 ttgtcgccat ctcgtcgagc gcgccaaaaa gaatttttgc tacgaccttg gcgttgaggt
     1081 cggcccgaaa gacacccgcc tgttggccct cttcaaaggt tgaacggatc aatgccaggt
     1141 actcggcaaa acccgcggcg gaaaactctt ccataaactt tgtcgacccg cgaagctcga
     1201 cctgaaaaac aactgcgaga tctcgatcgt cgccaagtcg ttcgagatga agcagagcaa
     1261 tttggcgcag cttttctttg ggatcgttga tcgtttcgac gatcttcttt gcttcagcga
     1321 ttgcttcgtc gacgcttcga tcaaaaactg agtggaggat gtcttctttg cttttgaagt
     1381 agaggtagac agttccatcg gcgacccccg cttcacgtgc aatgtcggcg actttggaat
     1441 tgaagtagcc gttgtgtgca aaaacggtaa tagctgcgcg caggatcgcc tcgcgcttat
     1501 cgccagtggg cggtcgaacg gagttgatgg aacgggcggt acgcatggtt tgtgcttagt
     1561 actttgttgt ctcgtttacg cggtgtcttc gattctagaa aactggttca caagagaaac
     1621 caagaacaaa gatcaaagca caaagatcaa ttgggtttcc agaaatgaat gaaccctcac
     1681 tcagttttgt ctttagccta gactgttgcc ctgcattgcg caagatgttg atgggggcat
     1741 tactgaagtt ttacagagaa ggaaggaggt cagtaccact acgcggtagc gcgtggcttg
     1801 gtcataagca aataggaacc gctcaataca agaagaaagc cacacgctac cgcg
//
LOCUS       DATCGC010001015         1762 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_248309, whole genome shotgun sequence.
ACCESSION   DATCGC010001015 DATCGC010000000
VERSION     DATCGC010001015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1762)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1762)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1762
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_248309"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(332..502)
                     /locus_tag="VIJ87_09925"
     CDS             complement(332..502)
                     /locus_tag="VIJ87_09925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444765.1"
                     /translation="MAYLVERNFMRRIGRAGYPFIAIGIAFMAIGFNGRRAFIAIGAA
                     FLIIGFIALRRN"
     gene            complement(490..1305)
                     /locus_tag="VIJ87_09930"
     CDS             complement(490..1305)
                     /locus_tag="VIJ87_09930"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY5444766.1"
                     /translation="MSLDPLSSGTSSAVETRFLVKQFGDFVAVDHLNLEVKRGSFFGF
                     LGPNGAGKSTTIKMLTGLLSPTSGTLRVLGLDLKEQPMEVKRRIGVVPEDLNLFERLT
                     GAEMLVFTGRMYGLGKTEIAQRAKELLELMELQDEPKKLIIEYSHGMKKKLSLACALI
                     HRPEILFLDEPFEGVDAIASRTLKDLLSRLTARGLTVFLTSHVLEIVERLCSDIAIIA
                     QGKLLASGALNELRKGIRLNGDGQGPVSLEEYFIHVVGGTRSTGEEEVLQWLT"
     gene            complement(1509..>1762)
                     /locus_tag="VIJ87_09935"
     CDS             complement(1509..>1762)
                     /locus_tag="VIJ87_09935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444767.1"
                     /translation="NAVVNVYDSLMTQRVQHTADILISLRDGHYYGWSPFGKFVRLAA
                     THGNALASSSNAFLMSTHRELPECVRADDAKPLLISDML"
BASE COUNT          468 a          436 c          429 g          429 t
ORIGIN      
        1 gttggagttt gagccacgag gctcgtgcag ggatttcaga tgactacaac tggctaccaa
       61 acaaaccacg ctcaaaagaa taattgcgac acttctcata gagttctcct tccagtagac
      121 gatcaatgag cgctacgtat catcacgaag gatgttattg caagtgacaa cgaacgtgtc
      181 cgtcgggagt attagatctc agagtgggga ttccggattt gggtgaatcg cacaattttg
      241 caactactgg cagaagaacc aggggtgagg atcaatctgc aatctgaaat ttcaatctaa
      301 aatttcccga caagctaaag catatcggac attagttacg gcggagggcg atgaagccta
      361 taattaaaaa cgcggcgccg attgcgataa acgctcgccg accattaaat ccgattgcca
      421 tgaacgcaat accgatggcg ataaatggat aaccagcgcg accaattcgt ctcatgaagt
      481 tcctttcaac taggtaagcc actggagtac ttcttcctca cccgtgctcc gagttccgcc
      541 aactacgtga ataaagtatt cctcaagtga tacgggtccc tggccgtcac cgttcaatct
      601 aattcccttt cgcaactcgt ttagcgcgcc tgaggccaac agttttcctt gcgcgatgat
      661 ggcgatatcg gagcagagac gttccacgat ctccaggacg tgcgaagtga gaaaaaccgt
      721 taagcctctc gcagtgagac gcgacaaaag atctttcaat gttcgcgaag cgatagcgtc
      781 gacaccttca aacggttcat cgagaaacaa gatctcaggt cggtgaatca aggcacaggc
      841 aagcgagagc ttcttcttca taccgtgcga gtattcaatg atgagtttct ttggctcatc
      901 ctggagttcc attagttcca ggagttcctt cgcgcgttgt gcaatttctg tctttccaag
      961 tccgtacata cgaccggtga agacgagcat ctccgcacca gttagtcgtt cgaaaagatt
     1021 cagatcctca gggacgacgc ctattcgtct cttcacttcc atgggctgtt cttttagatc
     1081 caaaccgaga actcgaagtg tgccgcttgt gggcgacagc aatcccgtaa gcattttgat
     1141 ggtggtagat ttcccggcgc cgtttggacc tagaaacccg aagaagctgc cgcgcttcac
     1201 ttcaagattg aggtggtcga cagcaacaaa atcaccaaac tgctttacga gaaaccttgt
     1261 ctcaacggca ctcgatgttc cggaggaaag agggtcaagg gacatgttcg aggttgtacg
     1321 cggtaaggga gtgataggtc aagtccaatg tccgatatgc ttcagcttgt cgttgacggg
     1381 aagaatttta gccgcagata aacccggata aattcagaca aaaggactca ggcagatcct
     1441 tttccctttg tctgatctgt gttcacctgt gtccatctgt ggctgatttt tgttaaggca
     1501 acgacaagct aaagcatgtc ggaaatcagc aacggctttg catcgtccgc ccgaacacat
     1561 tccggcaact cgcgatgggt gctcatcaag aaggcattgc tacttgaagc gagtgcattt
     1621 ccatgagtgg cagcaagcct cacgaacttt ccaaacggcg accacccata atagtgacca
     1681 tcgcgcaaac tgatcaggat gtcggctgtg tgctgaaccc gttgcgtcat gagcgagtca
     1741 tatacattta caaccgcatt tg
//
LOCUS       DATCGC010001016         1248 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_18949, whole genome shotgun sequence.
ACCESSION   DATCGC010001016 DATCGC010000000
VERSION     DATCGC010001016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1248)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1248)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1248
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18949"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            374..862
                     /locus_tag="VIJ87_09940"
     CDS             374..862
                     /locus_tag="VIJ87_09940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444768.1"
                     /translation="MKTLRVIVVSVLVSLAGFQLDQPVQAAPIDNGSFMSLWSIYSHC
                     QATSDFAQLREDALTLTKAANHSLTEEGFILPLPNKLEEYVSTPAARFAVDVKAMAAA
                     CSLRAGFAAVEAGKLDDAKDLLRPILSYQPQSEYSYYSLQAKSLLSDLEPSAIEVTLN
                     LR"
     gene            complement(953..>1248)
                     /locus_tag="VIJ87_09945"
     CDS             complement(953..>1248)
                     /locus_tag="VIJ87_09945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="starch synthase"
                     /protein_id="HEY5444769.1"
                     /translation="QLYSLRYGTVPVVRKIGGLADTVVPLTDDAQHVGRATGFYIEED
                     GADALLAVLRSAVKMYRDRSKWDQLIEAGMAEDVSWARSAKDYDRLFLSLVKG"
BASE COUNT          336 a          342 c          276 g          294 t
ORIGIN      
        1 gaagcgcgaa caatccgtta ttgaacatct ggctaaggga tggacgaaca aagagatcgc
       61 aaacgctctt gagatcactg aacagactgt caaggaacac attaaacaca tcatgaggaa
      121 aaccaactct acgaccagga ccggaatcct cgttcacgtc ttcaattcct aatctacaca
      181 atacctgtgt tgcaaatacc atagtgcgcg aaatacaaca cagcgattca tttcgagtcg
      241 tctaataagt cattgtaaat caatgactta tatgattgtg ctctggtctg ttgattgcac
      301 tgctggttca gtgcacatgc agtgatggta gagattctga acggtagcaa gacaaattga
      361 ggacagaggc aatatgaaga ccctgcgcgt gattgtagta agtgttctgg tttccctggc
      421 tgggtttcag ctagatcaac cggtacaggc agctccaatc gacaacggaa gcttcatgag
      481 cctgtggagt atctattctc actgccaagc caccagcgat tttgcccaac taagagagga
      541 tgcattgacc ctgactaagg cagccaacca ttcgctcacc gaagaagggt ttattctccc
      601 cctgccaaac aagctcgaag agtacgtgtc cactccagct gctaggttcg cagtcgatgt
      661 gaaagctatg gctgctgcct gttccttgcg ggcaggattc gctgccgtag aagcagggaa
      721 actcgatgat gccaaagacc ttctcaggcc aatcctgagc tatcaacctc aatctgaata
      781 ttcctactac agcctccagg caaaatcctt actttccgat cttgagccaa gcgctataga
      841 ggttacactc aacctccgct agatctggct agtcccacat aattccctcg ccgtctcagg
      901 atccagcttc gccaatggac ccgttcgtta gccgtgacaa ggtctgtggc tgtcatccct
      961 tcactaagga caagaagagt ctgtcataat ctttcgccga acgagcccaa gatacatcct
     1021 cagccatccc tgcctcgatc aattgatccc acttcgatcg atctcgatac atcttcacag
     1081 cactgcgcaa gacagccagc aaagcgtcgg ccccgtcttc ttcaatataa aatcccgtcg
     1141 cccgtcctac atgctgagcg tcgtcagtca gcggcacaac tgtgtcagcc aatccaccga
     1201 tttttctcac aacaggaacg gtgccatagc gaaggctgta gagctggg
//
LOCUS       DATCGC010001017         1217 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_48810, whole genome shotgun sequence.
ACCESSION   DATCGC010001017 DATCGC010000000
VERSION     DATCGC010001017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1217)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1217)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1217
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48810"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1217)
                     /locus_tag="VIJ87_09950"
     CDS             complement(<1..>1217)
                     /locus_tag="VIJ87_09950"
                     /inference="COORDINATES: protein motif:HMM:NF037982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nramp family divalent metal transporter"
                     /protein_id="HEY5444770.1"
                     /translation="GAVMAATSIGGGEWLVGPAVAVKYSSSIFLLVTAAIFLQVIFNL
                     EAIRYTLYTGEPIYGGIMRLKPGPKFWALFYTVLGFLQLGWPALAGSAAATLLSAWMG
                     KVPTADNRQVLNWTATILIIVVILILSFGGTIERMLEKFAWTMLFVVFSFLLFVNIAF
                     VPLTHWWTTFSGFFQFSGMPRPIDWGLIGALAATAGSGGLGNLTITNWVRDKGFGMGA
                     KVGAIPSAIGGTEIVLSHVGKIFEINRENLARWKEWMRYVHADQIWVWGVFCFLGMFL
                     NVNLATHIVPHGTDMQGLGAGAYQAKYLAERVWPGFWFVTLFTGFWLLFKTQLGNTDV
                     LVRTVTDALWMSNKKLRDWKHSAIQRIYYGILVIFSIWGALAIRAASPLRLFTILANV
                     AGIVMVIGGVQIF"
BASE COUNT          334 a          343 c          300 g          240 t
ORIGIN      
        1 aaaaagatct gcacaccacc aatcaccatc acaatgcctg cgacattcgc caggatcgtg
       61 aaaagtctca ggggcgacgc agcgcgaatc gcaagcgctc cccaaataga aaagataacg
      121 aggatgccat agtagattcg ctggatggca ctgtgtttcc aatcacgcag tttcttgtta
      181 gacatccaca gtgcgtcggt gactgtacga accaggacat ccgtgttgcc cagttgagtt
      241 ttgaacagta accagaaccc ggtgaagaga gttacaaacc agaaccccgg ccagactcgt
      301 tcggcaagat actttgcctg gtaagcgccc gcacctaaac cctgcatgtc ggtaccgtgc
      361 ggaacgatgt gggttgccag attcacattc agaaacattc cgagaaaaca gaagacgccc
      421 cacacccaga tctgatccgc gtgaacgtaa cgcatccatt ctttccagcg cgccaaattc
      481 tcacgattga tctcgaagat cttgccaacg tgagatagca ctatttcagt tccgccgatt
      541 gcactcggta tagcaccaac cttcgcaccc attccgaatc ctttgtcgcg cacccagttt
      601 gtgatcgtga ggtttcccag tccgccggaa cctgcggtcg cagcgagtgc gccgatgagt
      661 ccccaatcaa ttggcctggg cattccactg aattggaaaa accctgagaa cgtcgtccac
      721 cagtgagtca gaggaacgaa agcaatgttt acgaaaagaa gaaagctgaa cacgacgaac
      781 aacatcgtcc acgcaaactt ctccagcatc cgttcgatgg ttccaccgaa cgaaagaatc
      841 aagatcacaa cgatgatcaa gatcgtggct gtccaattga gcacctgcct gttgtcggca
      901 gttggaactt tgcccatcca ggcgctgagc agtgtggcgg ccgcactccc ggccagtgca
      961 ggccaaccca attgaagaaa accaagaacg gtgtagaaga gagcccaaaa cttaggcccg
     1021 ggcttcagcc gcattattcc gccgtagatt ggttctcctg tgtaaagggt gtaacggatc
     1081 gcctcgaggt taaagatcac ctgaaggaaa atggctgcgg ttacaagcag gaaaatggac
     1141 gatgaatatt tgacggcgac ggccgggcca acgagccatt cgccaccacc gatcgacgtt
     1201 gcggccataa cagcccc
//
LOCUS       DATCGC010001018         1959 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_346398, whole genome shotgun sequence.
ACCESSION   DATCGC010001018 DATCGC010000000
VERSION     DATCGC010001018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1959)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1959)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1959
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_346398"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..277)
                     /locus_tag="VIJ87_09955"
     CDS             complement(<1..277)
                     /locus_tag="VIJ87_09955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444771.1"
                     /translation="MQDFLQQENGGLGLPGFPPLPGWQQDSFLPASEDRSVFAPESAV
                     TMGQIRPRTNSYISKIMKERIKIFPTIAALALLVLNAFSVMAQTSENG"
     gene            complement(667..1572)
                     /locus_tag="VIJ87_09960"
     CDS             complement(667..1572)
                     /locus_tag="VIJ87_09960"
                     /inference="COORDINATES: protein motif:HMM:NF014658.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MqnA/MqnD/SBP family protein"
                     /protein_id="HEY5444772.1"
                     /translation="MSASSDQSSPFTEDKKFNMPTGTERRTITLAHSPDSDDAFMFYG
                     LATNKLDTGDLHFQHLLKDIQTLNEEATRGTYDVTAISFHAYAYVADKYALLPHGASI
                     GDNYGPIVVSRDAAKPDDIPKLKIAVPGTLTSAFLALRIFNPDFEYVVVPFDKIIDAV
                     KNGTCDAGLLIHEGQLFYESMGLHKVLDLGEWWHERHGLPLPMGGNVIRRDLGPELIK
                     EVSELLRKSINYSLSNREDALQYAMQFARDMEPELADRFVGMWVNELTLDYTERGREA
                     VRRLLEEGFEKGIIPNRVPVEFVDG"
     gene            complement(1556..>1959)
                     /locus_tag="VIJ87_09965"
     CDS             complement(1556..>1959)
                     /locus_tag="VIJ87_09965"
                     /inference="COORDINATES: protein motif:HMM:NF039584.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444773.1"
                     /translation="EQQEKSGGFQCFIPLAFYPPDTQLAHLPGPSGVDSLKTMAVSRL
                     LLDNFDHIKAYWVMLGKRLAQVALHYGANDIDGTITDGGELTTSYSVETNNEVKMSKA
                     ELVGLIEEAGFEAVERDTVYNRIERDDVSLV"
BASE COUNT          466 a          487 c          510 g          496 t
ORIGIN      
        1 atccattctc gctggtctgg gccataacac tgaaagcgtt gaggaccaac agggccagcg
       61 cggcaatcgt cggaaaaatt ttgatacgtt ctttcatgat ttttgaaata tatgaattgg
      121 tcctgggcct gatctgaccc attgttaccg cgctctctgg tgcgaaaact gacctgtcct
      181 cagatgcggg aaggaaagaa tcctgttgcc agccggggag gggcggaaag cccggcagac
      241 ccagaccacc attttcctgt tgcaaaaaat cttgcatcta gtgtaaggtt cccctactag
      301 aataagttac gacttaacta gcggcacgtt gttcactgaa aatcgagccc ggtcgacctc
      361 gaaatggcgg gctcagctag tttgaaagtt aaggtttctc aaggtcctca tgtcggcaac
      421 aggcactcgt ccacaaaccg tgaagcttta cggcgcggga gcgcagacgt gacgccgagc
      481 ggcggcgttg cttacacgga cgggcgataa tcaagctttg ggaggagctt ggttttacgt
      541 attctgaggc cgatgatgtg cgcggtgatt agctactcct tctgggcgga gtggttaata
      601 aagtcaccgc gcacacccca gctatttcaa agttctacat cccctggata gctcgaaatc
      661 aactgtttaa ccgtcgacaa attcgacggg aactcggttt gggatgattc ctttttcgaa
      721 gccttcttca agcagccgac gaactgcttc acgaccacgc tctgtataat ccagggttag
      781 ctcgttcacc cacatcccca caaacctatc cgcaagttca ggctccatat ccctggcgaa
      841 ttgcatggcg tattgaaggg catcttcgcg attcgataat gagtaattaa tgcttttacg
      901 gagcaactcc gagacttctt tgatcaactc cggacctaga tctcgtcgaa tcacatttcc
      961 acccataggc aacggaagac cgtgtcgctc atgccaccac tcgccgagat cgaggacttt
     1021 gtgtaagccc atcgattcat aaaataattg accttcgtga atgagtaggc ccgcgtcgca
     1081 ggtaccgttt ttgacggcat cgataatttt atcgaagggg accacgacgt actcaaagtc
     1141 tggattgaaa attcgaagcg ccaggaacgc gctggttaat gtgcccggta cagcgatctt
     1201 aagcttcggg atgtcgtcgg gcttggctgc gtctcgcgac acgacgatgg gaccgtagtt
     1261 gtcgcctatc gacgctccgt gtggaagcaa tgcgtatttg tctgcgacgt aggcgtaggc
     1321 atgaaaactg atagctgtaa catcgtatgt cccgcgggtg gcttcctcgt tgagcgtttg
     1381 aatgtctttc agtagatgtt gaaagtgcag gtcaccggta tccagtttgt ttgtggcaag
     1441 gccataaaac atgaacgcgt cgtcggaatc gggggagtgc gcaagagtaa tagttcttcg
     1501 ttcagttcca gtcggcatgt tgaatttctt atcctctgtg aaaggtgatg attgatcaga
     1561 cgaggctgac atcgtcacgc tcaatgcgat tgtagacagt atctcgttcg acagcttcga
     1621 aacccgcttc ctcgataagg cctactaact ctgccttgct catcttgact tcattgttgg
     1681 tttcgactga ataactggtg gtcaactcac caccgtccgt aatggtgccg tcgatgtcgt
     1741 ttgcaccgta atggagcgct acctgcgcta aacgttttcc gagcattacc cagtaggcct
     1801 tgatgtgatc gaagttatcc aggagcaaac gggaaacagc catcgtcttt agtgaatcca
     1861 ctccggaagg accaggtaag tgagcaagct gggtatcggg aggataaaag gcgagtggga
     1921 tgaagcattg gaaacctcct gacttctcct gctgctccc
//
LOCUS       DATCGC010001019         1190 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_281305, whole genome shotgun sequence.
ACCESSION   DATCGC010001019 DATCGC010000000
VERSION     DATCGC010001019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1190)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1190)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1190
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281305"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..574
                     /locus_tag="VIJ87_09970"
     CDS             <1..574
                     /locus_tag="VIJ87_09970"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: protein motif:HMM:NF006707.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="class I fructose-bisphosphate aldolase"
                     /protein_id="HEY5444774.1"
                     /translation="TIYFGSDESTRQITEISRAFAEAHELGMATILWCYLRNPKFKTP
                     EGDMHTAADLTSQANHLGVTIQADIIKQKLPERNGGYKAVEGVLGGSYGKTSKLVYDK
                     LTTDNPIDLVRYQVANCYMGRCGLINSGGESKGASDLAEAVRTAVINKRGGGMGLISG
                     RKAFQRPMSEGVELLNAIQDIYLEQEITVA"
     gene            735..>1190
                     /locus_tag="VIJ87_09975"
     CDS             735..>1190
                     /locus_tag="VIJ87_09975"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY5444775.1"
                     /translation="MQPEPAQTTDVELLKAIVRQDETALAELYDRYRVILFGLLVRIL
                     NNREEAEDVLQEVFLQVWRRAADFDENRGRPFTWLVTLARSRGIDRLRNLAARERVAQ
                     AGAREPSEEVSDAVDDALKSEQKTVVTTALAQLPEEQQQPLLLAYYDGLT"
BASE COUNT          306 a          325 c          320 g          239 t
ORIGIN      
        1 cacaatctat tttgggtccg acgaatcaac gagacagata actgaaatca gtcgcgcgtt
       61 tgctgaagca cacgaactcg gcatggcgac gattctttgg tgctacctcc gaaacccgaa
      121 gttcaagaca cctgaaggcg acatgcacac cgcggccgat cttacgagtc aggcaaatca
      181 tctcggtgtc acaattcaag ccgacatcat caagcagaaa ctccctgagc gaaacggcgg
      241 ttacaaagca gtcgaaggtg tactgggtgg ttcatacgga aagaccagca agctcgtcta
      301 cgacaaactc accaccgata acccgatcga cttggttcgt taccaggttg cgaattgcta
      361 catgggacgc tgcggtttga ttaactcagg cggcgaatcg aaaggcgcga gtgatcttgc
      421 cgaagcagtg agaactgcgg tcatcaacaa acgcggcggc ggtatgggtt tgatctcagg
      481 acgcaaagct ttccaacgac cgatgagtga aggcgtggaa ctgctcaacg caatccagga
      541 catttacctg gaacaggaga ttaccgtcgc gtaagaaagg tcgtctcctt ggagtgcggt
      601 ggcctggcac cgctttgtta aagcacccct aaaaccacgc ccaaagcggt gccagaccac
      661 cgcactccaa ggagacgacc aatctttttg ccatgcctca ctcgtagatt caccgagaga
      721 gcaaatcgag cgcgttgcaa ccggaaccgg cacaaaccac cgatgtagaa ctgctgaagg
      781 ccatagtccg tcaggacgaa acggcgttgg cggagctcta tgatcgttac cgggtaatcc
      841 tctttggcct actcgtccgt atattgaata accgcgagga ggcggaggat gttttgcagg
      901 aagtttttct ccaggtctgg cggcgcgcgg ctgacttcga cgagaatcgt ggacgacctt
      961 ttacctggtt ggtaacgctc gcacgtagtc gtggcattga tcgacttcga aaccttgctg
     1021 ctcgcgaacg agtagcgcaa gccggagcgc gagaaccgtc tgaggaagtt tccgacgccg
     1081 tcgacgacgc cctcaagtca gaacagaaga ccgtcgttac gactgcgctg gcacaacttc
     1141 ccgaagaaca acaacaacct ttgctgctcg cttattacga cgggctcact
//
LOCUS       DATCGC010001020         1008 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_481874, whole genome shotgun sequence.
ACCESSION   DATCGC010001020 DATCGC010000000
VERSION     DATCGC010001020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1008
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_481874"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..884)
                     /locus_tag="VIJ87_09980"
     CDS             complement(<1..884)
                     /locus_tag="VIJ87_09980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444776.1"
                     /translation="MFANFLQGNNVNFTQAHFDYTADLRQKVIEGYAQDEFRIRPSLT
                     LYYGLRYSFFGSPYDKNNRLSNFDPALYSASAAPQVTGAGNRVVGTGNFCNGITVNSS
                     QFLTGPNNCTPTISPLGNYVVDAPTKNLGPRVGLAWDPFGKGKTSIRTGYGIFYDQVL
                     NGTYEQNIGVNPPFQETVTITGTRLDQPLPTGQTPQVAASRASITVRAIQTDWHDPYM
                     QHWSFDIQHQLNEKTLITAGYFGSKGTHLIGAFELNELPPGLALKTQCVALGNDTQTL
                     QTPGVATVPCQPANTAFLS"
BASE COUNT          240 a          236 c          279 g          253 t
ORIGIN      
        1 gaaagaaatg ctgtgttcgc tggctggcaa ggaacggtag ccacgccagg agtctggagt
       61 gtctgcgtat cattccccag agcaacgcat tgagttttaa gtgcgagccc gggcggcagt
      121 tcattcaatt cgaaggcgcc gatcaaatgc gttcccttcg aaccaaagta tcctgccgta
      181 atcaaggtct tttcgttaag ttggtgctga atgtcgaaag accagtgttg catgtaggga
      241 tcatgccagt ccgtctgaat cgcgcgtacg gtgattgaag ctcttgaggc tgcaacctgt
      301 ggcgtttggc cagtcggtaa cggttgatcc aagcgagtgc cggtgatggt aactgtctcc
      361 tggaatggcg ggttaactcc gatgttctgt tcgtaagttc cattaagtac ctgatcgtag
      421 aaaattccgt agccggtacg aatggaagtc ttccctttgc caaatggatc ccatgccaac
      481 ccgacgcgtg gaccaagatt ctttgtcgga gcatctacca cgtaattgcc aagcggacta
      541 atcgtgggcg tgcaattgtt tgggccagtc aaaaactggc tggagttaac agtaatgccg
      601 ttacagaaat ttccggtacc gactacgcgg ttacccgcgc cagtaacttg cggagcggcg
      661 gacgcgctgt agagtgccgg atcaaaattc gaaagtcggt tgtttttgtc gtacggagaa
      721 ccgaagaacg agtatctcaa tccgtaatac aacgtcagac taggacgaat gcgaaactca
      781 tcctgcgcat aaccttcaat cactttctgg cgcaagtccg cagtgtaatc gaagtgagct
      841 tgcgtgaaat taacgttgtt gccttgcagg aaattcgcga acaattgaaa gttcgcacgt
      901 ctggcggcgt tggtatcctg accagcgatt tgcggcgatt gaacgctggt acccgaggta
      961 ctgttgttga aagcgttata aattccttcg ttgttaccgg ccagggcg
//
LOCUS       DATCGC010001021         2150 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_381279, whole genome shotgun sequence.
ACCESSION   DATCGC010001021 DATCGC010000000
VERSION     DATCGC010001021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2150)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2150)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2150
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_381279"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1305
                     /locus_tag="VIJ87_09985"
     CDS             <1..1305
                     /locus_tag="VIJ87_09985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444777.1"
                     /translation="QQTIDQTGPPYAPNYLGNGGIRNVLVPTGTDAAAARAATSAWIA
                     DQDVPYSLTWTGSLQRQFAKNYSFEVRYLATRGIHLLTQNRINRQNKVGNGLSGLPTF
                     LTAPTQAQLNALTLDLDQIQARSNFEPRFAAAGFTNPGSIVAYLSNGNSTYHGASAQL
                     VRRFAAGMQLTAAYTFSHLIDDTTAEVNTTVLSPRRVEDFQNLRNERADSALDRRHRF
                     VTSFIYEFPFFKNNDNRYVRTVAGGWSLAGTYIAEAGEKATVLSGIDSNLNGDSAGDR
                     AIRNPNGVRGTGSTVTALCRITACGTPGAGPIVGYLADNPNAEYIRTGLGAISNSARN
                     TMPLPGINNLDFSIFKNFRLGETRRIQVRADFYNALNHPQYIPGSPNDVQPVTTATVG
                     QINTLAAANLSLSNPGAATFNRADRVFLSNARFLQLALRFDF"
     gene            1389..1976
                     /locus_tag="VIJ87_09990"
     CDS             1389..1976
                     /locus_tag="VIJ87_09990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444778.1"
                     /translation="MRRILCNGSYLLTLVCMSVTFTSTQTQRKTPRDVVMESNRQELD
                     NLLLRKPILATEDKSARQAVLKQINDDFKNLQVLNNKLMSEVEDQGGVDYKEISTMLA
                     DIGSRAARLKSNLALPKVDEKKEKANSELTTAAALKDRLMEFDKVVMSFATNPIFQQA
                     NVIDVELAKQASGDLATIIERSGKLKKAAATLAKK"
BASE COUNT          569 a          553 c          548 g          480 t
ORIGIN      
        1 caacagacga tcgatcaaac cggaccacca tatgcaccaa actacctggg aaacggtggg
       61 attcgaaatg tacttgtgcc gactggaaca gatgcagccg cggcaagggc agccaccagt
      121 gcgtggattg ctgaccagga cgttccctat tcactaacct ggacgggcag tctgcaacgt
      181 caattcgcaa agaactattc ttttgaggtt cgctacctcg ctacgagagg cattcacctg
      241 ttgacccaga accgaatcaa tcgtcagaac aaagttggta acggcttgtc tggattgccg
      301 actttcttaa cggcgccaac gcaagcgcaa ttgaacgcgt taacgttgga cctcgatcag
      361 atccaggcac ggtcaaactt cgagccgcgt ttcgctgcgg cgggattcac aaatcccgga
      421 agtatcgtcg cctatctttc aaatggaaac tccacttatc acggggcatc agcacaactg
      481 gttcgccggt tcgccgcggg aatgcaactg acggctgctt acactttcag ccatctcatc
      541 gacgacacca cggcggaagt gaacacaact gtcctgagtc cccgacgagt tgaggatttt
      601 caaaacctac ggaacgagag agctgactcc gcacttgatc ggcgtcatcg atttgtcacg
      661 tcgttcattt atgaattccc gttcttcaag aacaacgaca atcgctacgt gcgcaccgtt
      721 gcaggtggtt ggagtttggc aggtacttac attgccgaag caggcgagaa ggctaccgtg
      781 ctttctggaa ttgattcgaa cttgaacgga gattcagcgg gagaccgtgc gatcaggaat
      841 ccaaatggcg tgcgaggaac gggtagcacc gtgacagctc tttgtcgtat cactgcttgc
      901 gggacgccgg gcgctgggcc aattgtcggt tatctcgcgg acaatccgaa cgcggaatac
      961 attcgcaccg gcttgggagc tattagcaat tcggcgcgca acacgatgcc cctaccgggg
     1021 attaacaacc tcgatttttc aatcttcaaa aacttccgcc tgggagaaac ccgacgcatt
     1081 caagtgcgcg cggatttcta caatgcacta aaccatccac agtacattcc gggttcgccg
     1141 aatgatgtcc aaccggtaac cactgccacc gtaggtcaaa taaacacact tgcggcggcg
     1201 aatcttagtt tgtcgaatcc gggtgcggcg acattcaacc gggccgatcg agtgtttcta
     1261 agtaatgctc gattcctaca gctggccttg cggttcgact tctaaactcc cttcaagaat
     1321 cgttttcgca aggcttacgg aggtggcgat gaacttcgcc acctcttctt cttttgagga
     1381 ggcatacgat gcgaaggatc ttgtgcaatg gttcgtacct gctcacgctc gtttgtatga
     1441 gcgtgacctt cacttcaacc cagacacagc ggaaaacacc tagagatgtg gtgatggaaa
     1501 gtaatcggca agaactcgac aacctgttgt tgcgtaaacc aatcttagcc actgaagaca
     1561 aatcagctcg ccaggcagta ctcaaacaga tcaacgacga cttcaagaac ttgcaagttc
     1621 ttaataacaa gctaatgagt gaagtcgagg atcaaggcgg cgtcgattac aaagaaattt
     1681 cgacgatgct cgctgacata ggtagtagag cggcgcgtct aaaatcaaac ctggccttgc
     1741 cgaaagttga cgaaaagaag gagaaagcga actcggagct cacgacggca gctgccttga
     1801 aagatcgtct catggagttt gataaagtag tcatgagctt tgcgactaac ccaatctttc
     1861 aacaagcgaa tgtgatcgac gtggaattgg caaaacaagc aagcggagat ttggcaacaa
     1921 tcattgagcg cagcggcaag ttaaagaaag ctgcggcaac gctggcgaag aagtagaaaa
     1981 tgaagctgac aaattggacg tcttcatgga gtgcggtggc ctggcaccgc tttcgtaaac
     2041 atagcgctct ccttttacaa aagcggtgcc aggtcaccgc actccaggga ggcgtcatct
     2101 ttgtaatcct tctcttctca tcagtatgtt ttgctcaaga cgcagcgaag
//
LOCUS       DATCGC010001022         1181 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_412851, whole genome shotgun sequence.
ACCESSION   DATCGC010001022 DATCGC010000000
VERSION     DATCGC010001022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1181)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1181)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1181
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_412851"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1028)
                     /locus_tag="VIJ87_09995"
     CDS             complement(<1..1028)
                     /locus_tag="VIJ87_09995"
                     /inference="COORDINATES: protein motif:HMM:NF014851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding domain-containing protein"
                     /protein_id="HEY5444779.1"
                     /translation="MSKVSRRTFLKSSSLAIVGGASIASLALEEIAAQQSTRIQSENL
                     SRRLTSGWEYRRGSLGGPWETWRKANDDANTWAKVELPHCFNALDAVDAEHPYFQGQG
                     WYRTRLKIDNPFLNGRTLLHFEGAGQKSEVYVYTRRLNSHVGGYDEYTVDITDEVSRF
                     PRTEKDPGLVPVAVMCDNARDLEMIPSNLSDFNLYGGLFRYVNLKYVPAISLERVIIE
                     PSLTQKGLTTVGISGRLYNPTQLKDDVELVVQIQDPRGKSIHTKTEKMTAWEGTRTIA
                     NFNVEKPLLWAPRSPLLYRAIVTLKSRHGDMQVSERFGLRSFDFIKNGPFMLNRERLL
                     IRGTQRHE"
BASE COUNT          280 a          319 c          283 g          299 t
ORIGIN      
        1 tcttcatgac gttgcgttcc tcgaatcagc agccgctctc tattcagcat gaacgggcca
       61 tttttgatga aatcaaaaga ccgcaagcca aaccgttcac tcacctgcat gtcgccatga
      121 cggctcttca acgtgacgat ggctcgatag agcaacggcg atcgcggtgc ccacaaaagc
      181 ggcttctcga cgttgaaatt tgcgatggtg cgagtgcctt cccacgcagt catcttctcg
      241 gtttttgtat gaattgactt accgcgtgga tcttgaatct gaacaactag ctcaacgtcg
      301 tctttgagtt gagttggatt gtacaagcgg ccgctgatgc cgaccgtcgt caggcctttc
      361 tgtgttaacg acggctcgat aatcacgcgc tcaagtgaaa tcgctggcac atatttcaga
      421 ttcacgtagc gaaagagtcc accataaaga ttgaagtcgc tcagattcga aggaatcatt
      481 tccaggtcgc gtgcgttatc acacatcaca gcaacaggaa ccaggcccgg atccttttcc
      541 gtcctgggaa acctactgac ttcatccgta atgtcgactg tgtactcgtc gtatccaccg
      601 acatgcgaat tgagtcgtcg cgtataaacg tagacttcac ttttctgacc agcaccttcg
      661 aaatgcaaga gcgtgcgacc atttaaaaac gggttatcga tcttcaggcg cgtgcgatac
      721 caaccctggc cctggaagta aggatgttca gcatcgacgg cgtccagagc attgaaacag
      781 tgtggtagct caaccttcgc ccatgtgttg gcatcatcgt ttgcctttcg ccaggtttcc
      841 cagggaccac caagacttcc tcgccgatac tcccagccac tggtaaggcg ccggcttaga
      901 ttctccgact gaattctggt cgactgctgc gccgcaatct cttcgagcgc gagcgaagcg
      961 atggaggccc ctccgacaat tgccagcgaa cttgatttta gaaatgtgcg acgactgact
     1021 ttggacattt cgatttgcag attggttttc gggtacagtg cggactctta ccatgaccaa
     1081 tcgaaaccag caagatgaat ttttgcacta taggtcgatt ctctcagtgc ctctgtcgtg
     1141 catattcggt tgatctcttc accacagaga cacagaggac a
//
LOCUS       DATCGC010001023         1047 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_48955, whole genome shotgun sequence.
ACCESSION   DATCGC010001023 DATCGC010000000
VERSION     DATCGC010001023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1047
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48955"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..521)
                     /locus_tag="VIJ87_10000"
     CDS             complement(<1..521)
                     /locus_tag="VIJ87_10000"
                     /EC_number="2.7.4.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0050145 - nucleoside monophosphate kinase
                     activity [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside monophosphate kinase"
                     /protein_id="HEY5444780.1"
                     /translation="MSKIIVLMGAPGAGKGTQARLLQERLNLPQISTGDIFRALKDSH
                     TSLAQEVRDIMAKGHLVPDELTIRLVRERTSEDDCRNGYILDGFPRTPAQAASLEELA
                     QEQGNQIVPVLIDTARDLLERRMTGRRNCPVCNEIYNLYFRPPKFDNVCDNHPNAQLV
                     HRADDNSETVSARL"
     gene            complement(593..>1047)
                     /locus_tag="VIJ87_10005"
     CDS             complement(593..>1047)
                     /locus_tag="VIJ87_10005"
                     /inference="COORDINATES: protein motif:HMM:NF012564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444781.1"
                     /translation="LILFFTFFYVSIVFNVEEVSDNLRKHGGFMPGIRPGRATAEYLN
                     SILTRLTTVGAIYLALVAFIPQFMLSGFKVGRLPWIGPMLDSFVSTTPGLAWIPTGMG
                     YQFYFGGTSLLILVGVAMDTVSQIEAQLVMRNYEGFLGSGGRLRGRRA"
BASE COUNT          280 a          292 c          236 g          239 t
ORIGIN      
        1 agtcgcgcgc tcacggtttc tgaattgtca tccgcccgat gaactagttg cgcatttgga
       61 tggttgtcac aaacattgtc gaacttcggt ggcctgaaat acaggttata gatttcattg
      121 cacaccgggc aattccttcg acctgtcatt cgtcgctcaa gcaggtcgcg cgcagtatca
      181 atcagaacag gaacaatctg gttcccttgt tcttgggcca gttcttcaag gctcgcagcc
      241 tgcgcaggcg ttctcggaaa cccgtcgagt atatatccgt ttcgacagtc atcctcactt
      301 gttcgctccc gcactaaacg aattgtcaat tcatcgggga ccaggtgtcc cttcgccatg
      361 atgtcccgaa cttcttgggc caacgaagtg tgggaatcct tcagcgcgcg aaaaatatct
      421 cccgtggaga tttgcggcaa attcaatcgc tcttgaagta agcgcgcctg agtgcctttg
      481 ccggcaccag gcgcacccat cagaactatt atcttcgaca taggcgagag atgatttgag
      541 gttcttattt acgacgggca aatgccagac acaaagtcaa acctaaacca ggtcaggctc
      601 ttcggccccg caatcggcca ccactaccaa ggaacccttc gtagtttcgc attacaagtt
      661 gggcctcgat ttgtgaaaca gtatccatcg ctacacctac caggatcagc aatgaagtac
      721 cgccaaaata aaactgataa cccatcccag ttgggatcca agccaaccct ggcgtcgtac
      781 taacaaaaga atccagcatc ggaccaatcc agggcagcct tccaacctta aaaccactga
      841 gcatgaactg tggaatgaag gccaccaacg cgaggtagat cgcacccaca gtggttagcc
      901 gagtcaggat cgaattcaag tactccgcag ttgctcttcc cggtcggatg cccggcataa
      961 acccaccgtg cttacgcaaa ttgtcagaca cttcttctac gttaaaaaca atcgagacgt
     1021 agaagaatgt aaaaaacaga atcaacg
//
LOCUS       DATCGC010001024         1197 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_114173, whole genome shotgun sequence.
ACCESSION   DATCGC010001024 DATCGC010000000
VERSION     DATCGC010001024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1197)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1197)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1197
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114173"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1197)
                     /locus_tag="VIJ87_10010"
     CDS             complement(<1..>1197)
                     /locus_tag="VIJ87_10010"
                     /inference="COORDINATES: protein motif:HMM:NF036516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444782.1"
                     /translation="GMSRPHTHLFEVDIRIKRTGTAPGDESLVMPVWTPGSYLIREFE
                     RNVQDFSAKDASGQPLKWEKTNKNTWHITTNGIAEWHANYKVYANELSVRTSELNSSH
                     AFWNNANLLMYLDGYLKNPSTVQVLAPDVWKVATGLPVAPGPKNTFRAENFDVLYDSP
                     FEASDFKTITFLVNKVKHRIVIDGEGNYDAEKMRNDVQKIVEAEVAIMGGEIPYADYT
                     FILHLRANAGGGLEHLNSTALGYPRFGFRVDPRTDRATSSSPNASQPTERYYSGFLSL
                     VAHEFFHLWNVKRIRPDALGPFDYQNENYTRMLWVAEGITDYYADVALRRANLISERD
                     FLAATARSFQGLQNTPGRLVQSAEESSYDSWIKFYRPDENTVNSQVSYYDKGGILGLL
                     LDLEIRK"
BASE COUNT          289 a          304 c          302 g          302 t
ORIGIN      
        1 tttcctaatc tcaaggtcga gcaatagtcc gagtatgcca cccttgtcgt aatacgacac
       61 ctgggagttc actgtatttt catctggacg ataaaacttg atccaggaat cgtaactaga
      121 ctcttcagca ctctggacca accgtcccgg cgtgttttgc aaaccctgga atgagcgggc
      181 agtcgccgcc agaaagtcac gttcggaaat cagatttgcc cggcgcaaag ccacgtcggc
      241 gtagtaatcg gtgatgcctt cagcgaccca gagcatcctg gtgtagtttt cgttttgata
      301 gtcaaacggg ccaagcgcgt cgggtcggat tcgcttcacg ttccacaagt gaaagaattc
      361 gtgggccacc aaagaaagaa atccgctgta gtagcgttcg gttggttggc ttgcgttagg
      421 cgatgatgaa gttgctcgat cggttcgagg atctactctg aaaccaaaac gaggatagcc
      481 aagcgccgtt gagttgaggt gttcgaggcc gccaccagca ttcgcgcgca agtgaagaat
      541 aaacgtgtaa tcagcatagg gaatttcacc acccatgatc gccacttccg cctcgacaat
      601 cttttgcacg tcgttgcgca tcttctcggc gtcgtagttg ccctcgccat cgatgacgat
      661 gcggtgcttt accttattga ccaggaaggt aatggtcttg aagtcactag cctcaaatgg
      721 tgaatcgtac aaaacgtcga agttctcagc acgaaaagta ttcttcggac ctggagctac
      781 gggtaagccg gtcgcaactt tccagacatc aggcgctaga acttgcacag tcgatggatt
      841 cttcaaatag ccatcgagat acatcaaaag gtttgcgttg ttccagaacg cgtgactcga
      901 attcaactcg ctcgtgcgca ccgaaagttc attagcatag actttgtagt ttgcatgcca
      961 ctcagcaatt ccattcgttg tgatatgcca cgtgtttttg tttgtcttct cccatttaag
     1021 cggttggcct gacgcgtctt tggcgctgaa gtcctgaaca ttccgctcaa actcgcggat
     1081 gagataagag ccaggagtcc aaaccggcat gacgagtgat tcatcgcctg gtgcagttcc
     1141 tgtacgcttg atcctgatat caacttcaaa cagatgcgta tgcgggcgcg acatgcc
//
LOCUS       DATCGC010001025         1865 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_181762, whole genome shotgun sequence.
ACCESSION   DATCGC010001025 DATCGC010000000
VERSION     DATCGC010001025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1865)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1865)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1865
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181762"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..822)
                     /locus_tag="VIJ87_10015"
     CDS             complement(<1..822)
                     /locus_tag="VIJ87_10015"
                     /inference="COORDINATES: protein motif:HMM:NF013126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HEY5444783.1"
                     /translation="MLNKRTLPKFSVVLLLLLLSVQTPQGQNTTPQLGKNSLKEVIAA
                     MTTEEKANLLVGMGFGLDMPGLPQASDQDKKSAEKVVGAAGRTHAIPRLGIPSLTLSD
                     GPAGVRISPIRNGDSSKTYYATGFPIATLVASSWNTDVAERVGAAIGREARDYGIDVM
                     LAPAMNIHRNPLGGRNFEYYSEDPLIAGKMAASFVKGVQANGVGTSIKHFAANNQEFN
                     RMQSNSIVSERALREIYLRGFEIAVKESQPWTVMSSYNLINGTPASHSEELLTTIL"
     gene            1254..>1865
                     /locus_tag="VIJ87_10020"
     CDS             1254..>1865
                     /locus_tag="VIJ87_10020"
                     /inference="COORDINATES: protein motif:HMM:NF021576.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2306 domain-containing protein"
                     /protein_id="HEY5444784.1"
                     /translation="MKINAKHVVFSVIAIASLYVMYHNERFLIDGSHPAWQHYAPFKW
                     WLLPHGIFGAIVLLFAPLQFSDRLRQRFTKAHRVMGRLYVLGAFVLAPLGAYIQYYQE
                     RLGGPRSFTVLGIVDAAMLMSATALMLLFAVRRKIALHRQWATRSYAIALVFIAGRFV
                     LGVTGWEQLGIEIVQAIIWSCLALAVVLADISIHWREIRAALSG"
BASE COUNT          418 a          481 c          494 g          472 t
ORIGIN      
        1 caagattgtc gttagcagtt cctcactatg ggatgcagga gttccattga tcaaattgta
       61 agaagacatc acggtccatg gctgagattc tttcacggca atctcaaaac ctcgcaagta
      121 gatctctctt aatgctcgtt cgctaacaat cgagttcgac tgcatgcgat tgaactcctg
      181 gttgttggcc gcgaagtgtt tgatggaagt tcccacgcca ttcgcctgga cacctttaac
      241 aaacgaggcc gccatctttc cagcgatcag tggatcttct gagtagtatt caaagtttct
      301 gccgcctaat gggttgcgat gaatgttcat cgccggcgcc aacataacgt cgattccgta
      361 gtcgcgtgcc tcgcgtccga ttgctgcgcc aacgcgttca gccacgtccg tattccacga
      421 cgaagccact aacgtcgcta tggggaaacc agtcgcatag taagttttgg agctgtctcc
      481 atttcttatt ggactaatac gaacaccagc ggggccgtcg gataaagtaa gagacggaat
      541 gcccaggcgc gggatcgcgt gcgtgcgccc ggctgctcct acaacctttt ccgcggactt
      601 cttgtcttgg tccgaagcct gcggaagccc cggcatgtcg agaccgaatc ccatgccgac
      661 aagaaggttt gccttctcct cggtagtcat cgcagcaata acttctttta gactgttctt
      721 accgagctgg ggagttgtgt tttgaccttg cggagtttga actgaaagaa gaagtaggag
      781 caggaccact gagaacttag gaagagttcg tttgttcagc attcggtttc ctgtttggtt
      841 aactggatct tggacttcgg actttggagt gcaagagcaa gcgtacagat atcagaccat
      901 caacaggttg acaaatgatt ttactgcagc tgtgctgccg ttgcggaaag cctctggctt
      961 tccgttaaag cctcgatgct ttgggcggct aggccgtccg gagacgaagc ctctcatttt
     1021 cttaatggcg aacggagagc cagaggcttt ccacacggga ggcggtacag ccgcaaacca
     1081 atctattgcc gaccgtagaa ctcacgagtt tctaagcagg cacagaaaac ttcaaactag
     1141 ggccaaccca aacctaaaca gaaaattctc accatgctga cccaaaaggc gtcgggactt
     1201 cgcgttaaca aatggcagtc gatatgacct ttaacgagag gtaaaacttc cttatgaaga
     1261 tcaacgccaa acatgtggtc ttttccgtga ttgcgatagc gagcctttac gtgatgtatc
     1321 acaacgaacg ttttctcatc gacggctcgc atccagcctg gcaacactac gcgccgttca
     1381 agtggtggct gctgccacac ggcatttttg gcgcaattgt cttgctgttt gctcctcttc
     1441 agttttcaga tcgactacga cagcgattca cgaaggccca tcgggtcatg ggccgccttt
     1501 acgtgttagg ggcgttcgtg ctcgccccgc ttggcgcgta catccagtat taccaggagc
     1561 gtctgggtgg gccacgttca ttcactgtgc tgggaatcgt tgatgccgca atgctcatga
     1621 gcgcgaccgc ccttatgctg ctctttgcag tgaggcgaaa gatcgcgttg catcgccaat
     1681 gggcgacgcg cagctatgca atcgcgctgg tattcatagc cggacggttt gttttgggtg
     1741 tcactgggtg ggaacaacta ggcatcgaga ttgtccaggc aatcatctgg tcttgccttg
     1801 cgctggcggt ggtactggcg gacatttcga ttcactggcg cgaaattcga gcagctttgt
     1861 caggg
//
LOCUS       DATCGC010001026         1127 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_281498, whole genome shotgun sequence.
ACCESSION   DATCGC010001026 DATCGC010000000
VERSION     DATCGC010001026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1127)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1127)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1127
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281498"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..612)
                     /locus_tag="VIJ87_10025"
     CDS             complement(<1..612)
                     /locus_tag="VIJ87_10025"
                     /inference="COORDINATES: protein motif:HMM:NF013936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF542 domain-containing protein"
                     /protein_id="HEY5444785.1"
                     /translation="MINSAMTVREVAIEVPQSTRLFEKLKIDYCCGGNRSLTEACNSA
                     GLEVDDLLGMLKTASIEGESETSAVDFQQLPITDLIEHIVNTHHVFTKDEMLRVDSLI
                     KKVIAAHGENHPELRTVGELFDRMCADLTPHMSKEERVLFPYLSALAKAAAKKLAAPF
                     SPFGTVNNPVRMMMIEHDAVGEILRELRNVTSNYTTPPDGCISY"
     gene            complement(820..>1127)
                     /locus_tag="VIJ87_10030"
     CDS             complement(820..>1127)
                     /locus_tag="VIJ87_10030"
                     /inference="COORDINATES: protein motif:HMM:NF021596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glucoamylase family protein"
                     /protein_id="HEY5444786.1"
                     /translation="APWAVVASLPFAPEIVLPTLRSFNDLYPDMTSKYGFKCSFNPTF
                     NGENEKGWISKGYYGLDQGPVVIMIENYRTDFFWELMKKCRYISDGLRKAGFKGGWL"
BASE COUNT          270 a          283 c          292 g          282 t
ORIGIN      
        1 atagctaatg catccgtcag gaggggtggt gtagttggat gttacgttac gcagttcgcg
       61 caaaatctcc ccgacggcgt catgttcgat catcatcatg cgcacgggat tattgacggt
      121 gccgaaaggg gaaaatggcg cggcgagctt tttagcggcg gctttcgcaa gcgccgacaa
      181 ataggggaac aggactcgct cttccttcga catgtgcggc gttaggtccg cgcacatccg
      241 gtcgaacagt tcgccgactg tgcgaagctc cggatgattt tctccgtgag ctgcaattac
      301 tttctttatc aacgaatcaa cccttagcat ctcgtctttc gtaaagacgt gatgggtatt
      361 aacaatatgt tctatgagat cggtgattgg gagttgttga aagtcgacgg cgctcgtttc
      421 cgactctcct tcaatgctgg cggtcttcaa catcccgagc aaatcgtcga cttcgaggcc
      481 cgctgagttg caggcttctg ttaaggaacg attgccaccg cagcagtaat caatttttag
      541 tttttcaaag agtctagttg actgcggaac ttcaatcgca acctcacgca cggtcatcgc
      601 tgaattaatc attatggttc tcctatctaa tctggtcgcc gccccaggcg tgccaatcca
      661 gacccttgtg agtgcaaggg acataccgga cgaaaaccta ggggattttg ataagcgaga
      721 gcctgggttg gggatttttt gcgaccggtt gcgaagaagt tcgcacaaga ggcttcaagt
      781 tctccaaaag gctggaagcg cattactaat tgagcgagac tacaaccaac cgcctttgaa
      841 tccggctttt cgcaaaccat ccgaaatgta acgacacttc ttcatcagtt cccaaaagaa
      901 gtcggtgcga tagttctcaa tcatgattac caccggaccc tgatccagac cgtagtaacc
      961 tttcgagatc cagcctttct cattttcccc gttgaaggtc ggattgaagc tgcacttgaa
     1021 tccatacttg ctggtcatgt caggatagag gtcgttgaag gatcgcagcg tcggcaacac
     1081 gatctccggc gcgaagggca gggaagcaac gacggcccat ggtgcaa
//
LOCUS       DATCGC010001027         1273 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_346616, whole genome shotgun sequence.
ACCESSION   DATCGC010001027 DATCGC010000000
VERSION     DATCGC010001027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1273)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1273)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1273
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_346616"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1148)
                     /locus_tag="VIJ87_10035"
     CDS             complement(<1..1148)
                     /locus_tag="VIJ87_10035"
                     /inference="COORDINATES: protein motif:HMM:NF019902.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444787.1"
                     /translation="MEEQDGTKQFNISERLEDLRREHQALLWEGSFRDYFEIVAQNPR
                     IAQLSHARINDMVHAAGVGRLNEGTQHEVLSYDFFSSELFGIEEPIARIVEYFKSAAQ
                     RLEVRKRILLLMGPVGGGKSTIVNMLKRGLEDYTKTEGGAVYAIKDCPMHEEPLHLIP
                     HKLRAEVEKHYGIYIEGDLCPQCRYSLDKIYGGRHEDVKVHRVAFSEKERVGIGTFSP
                     SDPKSQDITELTGSIDLSTIGEVGVESDPRAYRFDGELNIANRGLMEFVEMLKVDEKF
                     LYSLLTLSQEQSIKTGRFAMIYADEVILSHSNENEYIAFAGNRKSEALQDRIILVRVP
                     YNLRVSQEERIYDKLLHQSEALRNVHLAPNTLKVAAMFAVMTRLEEPKR"
BASE COUNT          276 a          325 c          336 g          336 t
ORIGIN      
        1 cgttttggtt cttccaggcg cgtcatcacc gcaaacatgg cggcgacctt taatgtattt
       61 ggcgccaggt gaacattccg tagcgcttca gattgatgga gcaacttgtc gtagatgcgt
      121 tcttcctgcg agacgcgcag gttgtaaggg acacgcacca ggataattcg gtcctgcaag
      181 gcttcggact tacgattacc agcaaaggcg atgtattcat tctcgttcga atgagaaagg
      241 atgacttcat ccgcgtaaat catggcgaag cggccagtct tgatgctctg ttcctgcgaa
      301 agtgttagca agctgtacaa gaacttctca tccaccttta gcatttccac gaactccatc
      361 aggcctcgat tagcaatatt gagttcgccg tcgaagcgat aagcgcgtgg atccgattcc
      421 acgccgacct cgccgatcgt cgacaagtcg atggaacctg ttagttcagt aatgtcctgt
      481 gatttaggat cactcggtga aaatgttccg atcccaacgc gttccttctc cgaaaacgcg
      541 acgcggtgaa ccttaacgtc ttcatgacgt ccgccatata tcttatcgag cgaataacga
      601 cactgtgggc acaaatcacc ctcgatatag atgccgtaat gcttttcaac ttccgcgcgc
      661 agtttgtgtg ggatcaggtg gagcggttct tcgtgcatcg ggcagtcttt gattgcataa
      721 accgccccgc cttcagtttt tgtgtagtct tcaagcccgc gtttgagcat gttgacgatg
      781 gtggatttgc caccacctac tggtcccatc agcagcagga ttcgtttacg tacttcgaga
      841 cgctgtgccg cggatttgaa gtattcgacg atgcgcgcga ttggttcttc gatgccgaag
      901 agttccgaag agaagaagtc gtacgacagc acctcgtgtt gcgtgccttc gttgaggcga
      961 ccgacgccgg ccgcatgaac catgtcgtta atgcgcgcgt gtgagagttg agcaattcgt
     1021 ggattctggg cgacgatttc gaagtaatca cggaaggagc cttcccaaag gagagcctgg
     1081 tgctcgcgcc gcagatcttc caatcgttca cttatgttga attgttttgt gccatcctgc
     1141 tcttccatag ccttgaaacc tcttcggctc tcgcgcattg gacagcgtgt ggggaaaggc
     1201 cacgcgatta accgtcacag acttgtagta gaagttgccg gttaagtccc ttgggtgtgt
     1261 gtgcttctcg atg
//
LOCUS       DATCGC010001028         1398 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_147749, whole genome shotgun sequence.
ACCESSION   DATCGC010001028 DATCGC010000000
VERSION     DATCGC010001028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1398)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1398)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1398
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147749"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..647)
                     /locus_tag="VIJ87_10040"
     CDS             complement(<1..647)
                     /locus_tag="VIJ87_10040"
                     /inference="COORDINATES: protein motif:HMM:NF024934.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEY5444788.1"
                     /translation="MRPTIRPTVVNRLLASLPRAEYKRLSPDLKPIALTFGEVLYEPG
                     DTIKHVYFPNDSIISLLSAMSERSTLEVGMVGNEGMAGLSVFAGVNKSSTRAIVQGSG
                     SATRMRAAVVWEEANRLGPFHQLLHRYSHSLQSQVSQASACNRFHSVNDRLARWLLMT
                     SDRLGTDEFRLTQEFMSNMLGVRREGVNQAAGSLQTAKLISYSRGMITILNRRRL"
BASE COUNT          364 a          371 c          354 g          309 t
ORIGIN      
        1 tgcagtcgcc ggcgattgag aattgtgatc atccctcggc tgtagcttat taatttcgca
       61 gtctgcagtg agccggccgc ctggtttact ccttcacgcc gaacgcccaa catattcgac
      121 ataaactcct gggtaagtcg aaattcatcg gtacccaggc gatcgctagt catcaacaac
      181 caacgggcaa gccggtcatt cacagaatga aagcgattgc acgctgaggc ttgagaaacc
      241 tgggactgta gagagtgaga ataccgatgc aagagttgat gaaaaggtcc aagccgattt
      301 gcttcttccc acacgactgc tgctcgcatt cgagtcgctg agcccgaacc ctgcactatt
      361 gcccgtgttg aggatttgtt tactcctgca aagaccgaaa gtcctgccat cccttcgttg
      421 ccaaccatcc caacctcaag cgtcgatctc tccgacatcg ccgagagcaa agaaatgatg
      481 gaatcgtttg ggaaatatac gtgcttaatc gtatcgccag gttcatatag aacttcgccg
      541 aaagtcagtg cgatcggttt cagatcaggc gacaaacgct tgtactccgc tcttgggagc
      601 gatgccaaca gccgattaac gactgtgggt cggatggttg ggcgcatttg aagggacctt
      661 aaatcgagcg tcgaccagat accagattaa tgaccaaaac gatcacagct atgacgagca
      721 ggatatgtat caggcccccg ccgacgtgcg agataaaccc aagtaaccaa agtaccagca
      781 gtatcaccaa tatcgtccac aacattgttt ttgctccctc taagaatttg tccgcatagt
      841 atgaagagct tcgagggaga cgtctgtgcg gcaacacaca cataggcaag agcagcaaga
      901 acgtaaggaa ctgattggtt cgtgatcctg agttccgcgg tcgggccgat tgctctgact
      961 atcattgcgc gttatctggt gaccgccgag ggcgtgccga acttgctcga ctttgggatt
     1021 gccaaactgc ttcgccccgg aagaaaccca gcgaaccgca accacagcaa tcgtgcagcg
     1081 attgatgacc ccggagtctg ccagccccga acaggttcaa ggagagcacg taacaactgt
     1141 aagcgacgtg tatcctgctg cggcacaaat tcactaggga cagacgaaga acatcggcaa
     1201 atttcaacgg ttagaagatt tgttgtgtac accgcacttc atcttgaatc acgcccgctt
     1261 ggctcatcaa tgcagcaatc tatcaaaagg cgatctagct cccgctgttt gcgctgccga
     1321 catcatcgaa cgtgagcgaa gatgaaaggt cgcgataggc gttggcctga gataggagtt
     1381 cgttggcctt ccgctcga
//
LOCUS       DATCGC010001029         1245 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_412923, whole genome shotgun sequence.
ACCESSION   DATCGC010001029 DATCGC010000000
VERSION     DATCGC010001029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1245)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1245)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1245
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_412923"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..187)
                     /locus_tag="VIJ87_10045"
     CDS             complement(<1..187)
                     /locus_tag="VIJ87_10045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444789.1"
                     /translation="MSAKFGMFAEDATPLGLISIPWRSPRVEATLGFETQPLRGIRKP
                     ETRSQKSAIPNPLAFSSP"
     gene            335..1195
                     /locus_tag="VIJ87_10050"
     CDS             335..1195
                     /locus_tag="VIJ87_10050"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016888 - endodeoxyribonuclease activity,
                     producing 5'-phosphomonoesters [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HEY5444790.1"
                     /translation="MQHRPRIGFHAPIKGGLHDALLVAKDTGCDTVQIFSRNPRGWMA
                     KPLSPDDVLLFKQTRKLTRISPVLIHCNYLVNLAAVDEALLIKSRESFREEVERALAL
                     GVDYLVVHPGSARGACEADGIALCAKSLKTACKGLKLGSFRILLENTAGQGECIGHRF
                     EHLRAIMDACPKLQLGVCFDTAHAFTAGYDIREEDGLEALIQRMQQTVGLKNVRAIHF
                     NDSRAVYNSRVDRHWHIGEGHIGRDALKRVAQHPKLRHCAFILETPYDDPRADIKNLE
                     MLKSFVGKSP"
BASE COUNT          293 a          331 c          334 g          287 t
ORIGIN      
        1 caggggaact gaaggctaga ggatttggga ttgcggattt ctggctgcgg gtttcgggtt
       61 tcctgatacc gcgaagcggt tgcgtctcaa agcccagggt tgcttcaacc ctgggcgatc
      121 tccatggaat tgaaatcaac cccaacgggg ttgcgtcctc ggcgaacatt ccaaattttg
      181 cggacataaa tcggtcgcaa ccccgttggg gttgagtcca aacgtcgatc ccccagggtc
      241 gacgtcaaag caggtcaacc ctgggctttg ggccgcaagc gcttggaggt acccttggct
      301 catagcctca tctgtatttc gctcgttcaa ctaaatgcaa catcgtcctc gtatcggctt
      361 tcacgcccca attaaaggcg gacttcacga cgccttgctc gtggctaaag acacaggctg
      421 cgacaccgtt caaatctttt cgcgtaaccc acgcgggtgg atggctaagc cgctatcgcc
      481 tgacgacgtt ctcctattca aacaaaccag aaagctcacc aggatttcgc cggtcctgat
      541 tcactgcaac tacctggtaa accttgcggc agttgacgag gcgttgctga tcaaatctcg
      601 cgagtcgttt cgtgaagagg ttgagcgagc gctagctttg ggcgtcgact atctcgtggt
      661 gcatccaggc agtgctcgtg gtgcgtgtga agccgacggc attgcgctgt gcgctaagag
      721 tctgaagact gcgtgcaaag gcctaaagct cggttcgttt cgcattctgc ttgagaacac
      781 ggccggacaa ggcgaatgca ttggacatcg cttcgaacat ttacgcgcca tcatggacgc
      841 ctgtccaaaa ctgcagcttg gagtctgttt cgataccgca catgccttta ctgccggcta
      901 cgacattcgc gaagaggacg gattggaagc gttaattcaa aggatgcagc aaacggttgg
      961 cttaaaaaat gttcgcgcaa ttcatttcaa tgattcacgt gctgtttaca actccagagt
     1021 cgacagacac tggcatattg gcgaaggaca tattggacgc gacgccctga agcgcgtggc
     1081 ccagcatccg aaactgcgcc actgcgcatt catcctggaa actccttacg acgacccgcg
     1141 ggcagacatc aaaaaccttg agatgttgaa gtcttttgta ggcaaatctc cgtaacagac
     1201 cgtcggcgtt ttaagtaggc gcaacaaaag ttaacgcaga ggaca
//
LOCUS       DATCGC010001030         1226 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_346680, whole genome shotgun sequence.
ACCESSION   DATCGC010001030 DATCGC010000000
VERSION     DATCGC010001030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1226)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1226)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1226
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_346680"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..491)
                     /locus_tag="VIJ87_10055"
     CDS             complement(<1..491)
                     /locus_tag="VIJ87_10055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444791.1"
                     /translation="MESPESLNESLIEVYVLTANRILVYRLGHLGDTLVALPSLAAIR
                     KTFPNSHIALLSNYHSPSERVSPEHVIPDGLIDEWLTYESSDAGGKATEMVRLLVRLR
                     IKKFDTLVYLAPRIRSKRDVRRDLGFFRWAGIKQFMGERGFEALPTRGANGLPSVAHE
                     TDH"
     gene            complement(454..>1226)
                     /locus_tag="VIJ87_10060"
     CDS             complement(454..>1226)
                     /locus_tag="VIJ87_10060"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY5444792.1"
                     /translation="TKEFFEEIDRRFFNASPLYRGTPPFSQIIPLATLKGKRVLEIGC
                     GLGSHSQLLAEAGCRLTSIDLTPRAVALTTQRLSLNNLPVDVREMDAEQMDFKDDEFD
                     FVWSWGVIHHSAHTEVIVKQVARVLKPGGEFRCMVYNRKAFDSYVKLVRGFVTGKRFK
                     GMSTADILSFYTDGYVARYYTRSSLAELLSTGGLEVKDVYPMGQTSEFFPIPGKGLLG
                     RAKYSLVDRMPRRLTARALLKTGSFLFGISRKPERVAY"
BASE COUNT          306 a          334 c          308 g          278 t
ORIGIN      
        1 aaatgatcag tttcgtgggc aaccgaaggc agtccgttcg ccccacgtgt tggcaacgcc
       61 tcaaaccctc gttcgcccat gaactgtttg atcccggccc aacgaaagaa tcccaagtcc
      121 cgacgcacat cgcgtttaga acgaatgcgt ggagcgaggt acacaagcgt gtcgaacttc
      181 tttattcgta gtcgcaccag gagccgaacc atctcggttg ctttgccgcc cgcatcgctg
      241 gattcatagg tcagccactc atcaatgagt ccatcaggaa tcacgtgttc cgggctaact
      301 ctttcgctgg gtgagtggta gttggacaag agagcgatgt gagagttagg aaacgttttc
      361 cgaatcgcgg ctaacgatgg cagcgcaacg agcgtgtcac ccaggtgtcc tagtcgataa
      421 acgagtatgc ggtttgcagt caggacgtac acttcaataa gcgactcgtt caggctttcg
      481 ggagattcca aatagaaaag aaccagtctt taacaaggca cgagcggtga gccgccgcgg
      541 cattctatcc accaacgaat acttagctcg tcccaataac cccttgcctg ggatcggaaa
      601 gaattcactg gtctggccca tcgggtaaac atctttgact tccaatccgc ctgtgctgag
      661 caactcggcg agcgagctgc gcgtgtagta tcgggcgacg taaccatccg tgtagaaact
      721 aaggatgtca gcagtagaca ttcccttgaa ccgttttccc gttacgaagc cacgcaccag
      781 ctttacgtac gaatcaaacg ccttgcggtt gtagaccatg cagcgaaact caccgcccgg
      841 ctttagcacc cgcgctactt gcttcacgat tacttcagtg tgagccgaat gatgaatcac
      901 tccccaggac catacgaaat cgaattcatc gtctttgaag tccatctgct cagcatccat
      961 ctcacgcaca tcaactggca ggttgttcaa actgaggcgt tgtgttgtta gcgcaacggc
     1021 gcgaggtgtc aggtcgatac tcgtcaacct gcatcctgct tctgcaagta actgtgagtg
     1081 cgaacccaaa ccacaaccga tctcgagaac tcgttttcct ttcaacgtgg cgaggggaat
     1141 gatctgggaa aaaggtggcg tgccgcgata cagaggcgac gcattgaaaa aacgacggtc
     1201 aatctcttca aagaattctt tggtac
//
LOCUS       DATCGC010001031         1109 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_114239, whole genome shotgun sequence.
ACCESSION   DATCGC010001031 DATCGC010000000
VERSION     DATCGC010001031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1109
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114239"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..714
                     /locus_tag="VIJ87_10065"
     CDS             <1..714
                     /locus_tag="VIJ87_10065"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="PEP-CTERM proteins occur, often in large numbers,
                     in the proteomes of bacteria that also encode an
                     exosortase, a predicted intramembrane cysteine proteinase.
                     The presence of a PEP-CTERM domain at a protein's
                     C-terminus predicts cleavage within the sorting domain,
                     followed by covalent anchoring to some some component of
                     the (usually Gram-negative) cell surface. Many PEP-CTERM
                     proteins exhibit an unusual sequence composition that
                     includes large numbers of potential glycosylation sites.
                     Expression of one such protein has been shown restore the
                     ability of a bacterium to form floc, a type of biofilm;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEY5444793.1"
                     /translation="YPILACSNREFPFLEDYRPTAIARHSLDVRALLFGLMKIRLSIK
                     GREIMKAILLILLCSVSVLADGVNTPKRKPRPKRKAEQSQATKVVVTPKAHPVKLPEL
                     LTTKYDELLGYPYQRPLLPLNDIPPLKAEVIETREVAVYPFEESHKPKFWFLLIGAAA
                     IPFLVPHGHEDTPPPIVSPPQITPFVVNPTTSPTPGPTPEVVPTTTVPEPTSIVLFVS
                     GLAILLKRRVTGHLIKTRR"
     gene            complement(735..>1109)
                     /locus_tag="VIJ87_10070"
     CDS             complement(735..>1109)
                     /locus_tag="VIJ87_10070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444794.1"
                     /translation="DGALELNGRSWQEDGTLSARYWSEALKEKKEPSGVFYYWKGERP
                     LQPGAPQLEGTGEIRMESAERASGYFTTRADTPPKVNTRTAGVYLRADPEDLSCLDGR
                     DDTKRAELIAERLRHWKSIKTT"
BASE COUNT          259 a          323 c          265 g          262 t
ORIGIN      
        1 tacccgatac ttgcctgttc taaccgagag ttccccttct tagaagacta tcgcccgaca
       61 gctatcgccc gtcacagtct cgacgtgcgc gctttgttgt ttgggctaat gaagatcagg
      121 ttgagcatca aggggagaga aatcatgaaa gccatactat taatcttact ctgttcggtc
      181 tcagttctcg cggacggcgt caacacgccg aagcgtaagc ctaggccgaa gcgcaaagca
      241 gaacagtctc aagctactaa ggtggtggtg acgcccaaag cgcaccccgt caagctaccg
      301 gaattgttga ccaccaagta cgacgagttg ctgggctatc cgtaccagcg acccctactg
      361 ccactaaacg acatccctcc gctaaaggca gaggtaatcg aaacacgaga ggtggcggtg
      421 tatccgttcg aggagtctca caaaccaaag ttctggtttc tattgatagg agcggcagcg
      481 atcccatttc tggttcctca tgggcacgaa gacactccgc ctcctattgt ttcgcctcca
      541 caaataacgc ccttcgtcgt caatccaaca acaagtccga cgccaggtcc aacgcctgag
      601 gtcgtaccta ctacaactgt acctgaacct acctcgattg ttttgtttgt ttcagggctg
      661 gcgatactgc ttaaaagaag agtaaccgga cacctcataa aaacgagacg ttagcaaaaa
      721 aacacgtact gacctcaagt agtcttgatc gacttccaat gtctcaatcg ctctgcgatt
      781 agttccgctc gtttcgtatc gtcgcgtcca tcgagacaac ttagatcctc cggatcagcg
      841 cgcaagtaga caccagccgt acgagtgttg acctttgggg gtgtgtctgc gcgagtggtg
      901 aagtatccag acgcacgttc agccgactcc atgcggatct ctccggttcc ttccaactgt
      961 ggcgcacccg gttgtagcgg tcgctctccc ttccagtagt agaagacgcc ggaaggctcc
     1021 ttcttctcct tcagcgcttc gctccaatat ctcgctgaga gtgtgccgtc ctcttgccat
     1081 gaacgaccgt tgagttccag tgccccgtc
//
LOCUS       DATCGC010001032         1209 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_317118, whole genome shotgun sequence.
ACCESSION   DATCGC010001032 DATCGC010000000
VERSION     DATCGC010001032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1209)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1209)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1209
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_317118"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..908
                     /locus_tag="VIJ87_10075"
     CDS             <1..908
                     /locus_tag="VIJ87_10075"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY5444795.1"
                     /translation="SSTLLTATPLQTEPTSLFFESHRLRLHYWDYGGEDKPALVLIHG
                     GLDHARSWDWVAAALLDTYHVYAVDLRGHGDSEWAPGAIYTVGEHILDLTALCETIGT
                     PLTLIGHSLGGVIALSYTGTFPGNVIKVVSIEGMGPPPTHHSQKDPYPDRMRRWIEQM
                     RDVERRERRAYKDLESAVARMREANPHLSEEMARHLTQHGSNRMADGSYTWKFDPFVR
                     GWPPYGFDSAQASELHKRIECPVLLFRGLESWASDPEKDGRAKALKDYRLVNVPNAGH
                     WLHHDQLAVFLRETKVFLSETFTTR"
     gene            complement(895..>1209)
                     /locus_tag="VIJ87_10080"
     CDS             complement(895..>1209)
                     /locus_tag="VIJ87_10080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444796.1"
                     /translation="NANTISQALDCVRKGGSVIVTGLSRADTLASIPTFPFVMQEKRL
                     IGSLYGSGSPAIDIPRLVDLYQKGKLKLRELVTHRYRLAEVNDALGQLASGTDARGII
                     EW"
BASE COUNT          283 a          343 c          308 g          275 t
ORIGIN      
        1 tgtcttccac cctgttaaca gcaacgccgc tccaaacgga gccgacttcc ctcttcttcg
       61 agtcgcatcg gttgcggctt cattactggg actacggtgg cgaagacaaa ccagctcttg
      121 ttctcattca cggcggcctc gatcacgctc gcagttggga ctgggttgca gccgcgttac
      181 tcgatactta tcacgtctac gcagtcgatc tacgcggcca cggcgatagc gaatgggctc
      241 ctggcgccat ctacacagtt ggcgaacaca ttcttgatct aaccgctctt tgcgaaacga
      301 ttgggactcc cctcaccctt atcggacact ctcttggtgg tgtaatagcg ctgagctaca
      361 ccggcacttt tcccggaaat gtcatcaaag ttgtctccat tgaaggaatg gggccaccac
      421 ctactcacca ctcccagaaa gatccgtatc cggatcgaat gcggcgctgg atagaacaaa
      481 tgagagatgt tgagcgtcgg gagcgtcggg cttacaagga cctggaaagc gctgttgctc
      541 ggatgcgtga ggcgaaccca cacctttccg aagagatggc ccgccatctt acacagcatg
      601 gctcaaaccg aatggccgac ggctcttaca cgtggaaatt tgatccgttt gtgcgtggct
      661 ggcctcctta tggattcgac agtgctcaag cgagtgaact gcacaagcgt atcgaatgcc
      721 ccgtactact atttcgtggc ttggaaagtt gggcgagcga tccggaaaaa gacggtcgag
      781 caaaggcgct taaagattat cgactcgtca acgttcccaa cgccggtcac tggttacatc
      841 acgatcagct agcggtgttt ttgcgggaaa ccaaagtgtt cctgagtgaa actttcacca
      901 ctcgataatc ccacgcgcat ctgtcccaga agccaactga cccagcgcat cgttcacttc
      961 tgccaaacgg tagcgatgtg tcaccagttc gcgcagcttc agttttccct tctgatagag
     1021 atcgaccaat cgagggatat caattgcggg actgcctgac ccgtacagag aacctatcaa
     1081 tcgtttttcc tgcatcacaa agggaaaagt cggaatggac gcaagggtgt cggcacgcga
     1141 aaggcccgtc acgataactg acccgccttt acggacacaa tctaacgcct gcgagatcgt
     1201 gttcgcgtt
//
LOCUS       DATCGC010001033         1151 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_114251, whole genome shotgun sequence.
ACCESSION   DATCGC010001033 DATCGC010000000
VERSION     DATCGC010001033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1151)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1151)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1151
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114251"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            137..865
                     /gene="pgsA"
                     /locus_tag="VIJ87_10085"
     CDS             137..865
                     /gene="pgsA"
                     /locus_tag="VIJ87_10085"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008444 -
                     CDP-diacylglycerol-glycerol-3-phosphate
                     3-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HEY5444797.1"
                     /translation="MNLPNALTLLRIFIVPLLVVVLLTPFSESWFGLPRHILGVLMFL
                     AAALTDFLDGHIARRRGQVTRLGQLLDPIADKLLISAALISLVENQLAPAWAVVIIIG
                     REFAVTGLRSIAAVDGLVISASKMGKFKMLAQVVTITLLIASSVAGKPPVANFGRPFP
                     AIEFWSVPELRSAWSHLIGPEITTATDWQVLVYTAGRAMLWLVVVSACTSMYGYFSSF
                     YRAVVADRTAKQKAKGSAVIVSPE"
     gene            complement(868..>1151)
                     /locus_tag="VIJ87_10090"
     CDS             complement(868..>1151)
                     /locus_tag="VIJ87_10090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444798.1"
                     /translation="ARGRATGFQSDAYRGGGFSSQSQRAKDSTFLVNVPGRYRYRPIT
                     TREVKGHRPEMPWKNIGEMVVIDVQARTATAIITRTVAEAHTGDWVEIQ"
BASE COUNT          236 a          291 c          307 g          317 t
ORIGIN      
        1 aggattcatc gtcagtagta ttcacagtga aggactggaa agttccagaa tcagatcggt
       61 ttgacacgtt ttccgagcgg gtcctactat gcaactatag tttgaagtaa cgtgttctcg
      121 gctcaggcgg ccatttgtga accttccaaa cgccctaacc ctactgcgaa tcttcattgt
      181 cccgttgctt gtcgtcgtgc tgctgacgcc attttcggag agttggtttg gactgccgcg
      241 tcacattcta ggcgtgttga tgtttcttgc cgctgcgttg actgactttt tggatggcca
      301 catcgctcgt cgtcgtggcc aggtaacacg ccttggccaa ttactcgacc cgattgccga
      361 caagttgctt atctctgcag ccttgatttc attggttgaa aaccaactag ctccggcatg
      421 ggcggttgtg atcataattg gtcgagagtt cgcggtcact gggctgcgat caattgccgc
      481 agtcgatggt ctcgtgatct cagcgtcgaa gatgggcaag ttcaagatgc tggcgcaagt
      541 agtcacaatt accctgctga ttgcatcgag tgtggctggg aaacctccgg tagcaaattt
      601 cggaagaccg tttccggcga tcgaattctg gtccgttccg gagttgcgaa gcgcgtggag
      661 ccacctgatt ggtcccgaga ttacaactgc aactgactgg caggtccttg tctacacggc
      721 aggtcgagct atgctttggt tagtggttgt ttcagcctgt acttcgatgt acgggtattt
      781 cagttcgttc taccgtgcag tcgtcgccga ccgcacggca aaacagaaag ctaaaggtag
      841 cgctgttatc gtctctcccg aatagagcta ctggatttca acccagtcac cggtgtgcgc
      901 ctcagcgact gtccgcgtga ttattgccgt cgcagttcta gcctgaacat cgatcacaac
      961 catttcgcca atgttcttcc agggcatctc tggacgatgt cctttgactt ctcgagttgt
     1021 gattggtcga tagcgatatc ttccgggaac attgactaga aaagtcgaat cttttgctcg
     1081 ttgggattga gaagagaaac cgccgcctcg ataggcgtcg ctttgaaatc cggtcgcacg
     1141 tccgcgagca t
//
LOCUS       DATCGC010001034         1634 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_49092, whole genome shotgun sequence.
ACCESSION   DATCGC010001034 DATCGC010000000
VERSION     DATCGC010001034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1634)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1634)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1634
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49092"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..703
                     /gene="menC"
                     /locus_tag="VIJ87_10095"
     CDS             <1..703
                     /gene="menC"
                     /locus_tag="VIJ87_10095"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: protein motif:HMM:NF024771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HEY5444799.1"
                     /translation="PEILLEKIRKEVDAGYQRIKIKIKPGWDVRIVEQVRKEFPDIRL
                     MGDANSAYSLADVALFKDLDNYNLMMLEQPLSHDDIFDHAKLQSQIQTAVCLDESIHS
                     AEDAIHAIELGSCRIINVKLGRVGGHSEAKRVERVTRENNIPVWCGGMLESGVGRAHN
                     IAMSTLAGFTLPGDVSASSRYWSEDIIEPPVMVSSRGTITPPEKPGIGFDLNLPRIDA
                     LTVRKETIKSASASA"
     gene            716..>1634
                     /locus_tag="VIJ87_10100"
     CDS             716..>1634
                     /locus_tag="VIJ87_10100"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY5444800.1"
                     /translation="MTANLISPDLARRVRSSFETRQENIEEFIRTLVEIESPSGDEHG
                     SRLVVDVLAKAAAQLECVSSIERSDVPGFGQHLVIEAFPQSHTAGQVLLVGHTDTVHE
                     LGTILQRPWRREENRIYGPGIFDMKANCAMAVEVLRTLQSLKVTPQYGVTIVLTCDEE
                     VGSQSGWPLIERVAKTRATRCALVMEPPAPGGRVKTGRKGTGMYSIKVEGKAAHAGLE
                     PEKGASAILELARQTERLHSINQSGSGITLNLGVVRGGTRSNVVAAEAEGEIDVRFTT
                     EGEANQIEQLLKTLKPIDERTRVFVSGGIN"
BASE COUNT          416 a          388 c          461 g          369 t
ORIGIN      
        1 accggaaatc cttctcgaga agatcaggaa agaagtcgat gccggttatc agcgcatcaa
       61 gatcaaaatc aagccaggct gggatgtccg catagttgaa caagtgcgca aagagtttcc
      121 tgatattcgt ttgatgggag atgcaaactc agcctattcg cttgccgatg tcgcattgtt
      181 caaggacctc gacaattaca acctgatgat gttggaacag ccattgtcac acgacgacat
      241 cttcgatcac gccaagcttc aaagtcagat tcagacagca gtctgcctcg atgaatcgat
      301 tcactctgct gaagatgcga ttcatgcaat cgaattggga tcatgcagga ttattaatgt
      361 gaaactcggt cgcgtcggcg gtcactccga agccaagcgt gtcgagcgcg taactcgtga
      421 aaacaacatt ccagtttggt gtggcggcat gcttgagtcg ggagtcggta gggcacacaa
      481 catcgccatg tcgacgttgg ctggtttcac actgccgggc gatgtttcag cgagttctcg
      541 ttactggtcc gaagacatca tagagccgcc ggtaatggtc agtagtcgcg gaacgattac
      601 gcctccggaa aaacccggca tcggtttcga tctcaacctg cctcgtatcg acgcgctaac
      661 tgtgcgtaag gaaacgatca aatcggcatc cgcttctgcc tgatcacaaa acatcatgac
      721 cgcaaatcta atttctccgg acctcgcaag acgggttcgg agttcatttg aaaccaggca
      781 ggaaaacatc gaagagttca tccgaacgtt ggttgaaatc gaatcgccgt cgggtgatga
      841 acatggcagc cgcttagtgg ttgatgttct ggcgaaggca gcagcacaac ttgagtgcgt
      901 cagttcaatc gagcggtcag atgttcctgg ttttggtcag cacctcgtca tcgaggcatt
      961 tccgcaaagc cacacggccg ggcaggtcct tctcgttggt cataccgata ccgttcacga
     1021 gctgggcacg attcttcaac gtccatggcg tcgcgaagag aatcggattt acggtccggg
     1081 cattttcgat atgaaggcca attgcgcgat ggcagttgag gtgttgcgaa cgcttcaaag
     1141 tttgaaggtt acgcctcaat acggagtcac gatcgttttg acgtgcgatg aagaggttgg
     1201 tagtcagagt ggatggccat tgattgagcg tgtggctaaa accagggcaa ctcgatgcgc
     1261 tctcgttatg gaaccaccgg ctcccggagg ccgagtaaag actgggcgaa agggaactgg
     1321 catgtattcg atcaaggtgg aggggaaagc cgcacacgcc ggacttgagc cagagaaagg
     1381 cgcgagtgca atcctggaat tagcgcggca gacagagcga cttcattcaa ttaaccaatc
     1441 gggttccgga attaccctga acctgggagt tgtacgtgga ggcacgcgct cgaacgtagt
     1501 tgctgctgag gctgaaggag agattgacgt tcgctttaca actgagggtg aagcaaacca
     1561 aattgagcag ctactaaaga cacttaagcc gattgacgaa cggacgaggg tttttgtgtc
     1621 gggtggaatc aacc
//
LOCUS       DATCGC010001035         2507 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_83729, whole genome shotgun sequence.
ACCESSION   DATCGC010001035 DATCGC010000000
VERSION     DATCGC010001035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2507
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83729"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(131..1270)
                     /locus_tag="VIJ87_10105"
     CDS             complement(131..1270)
                     /locus_tag="VIJ87_10105"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY5444801.1"
                     /translation="MTNRLKLSRRSFTKVIGAGAAFAALRPIDELKASWTTVLPGSSA
                     GDPQPKVVRLSSNENPYGPSPASLKAMTDSFSLAWRYPDEYADMLSEELAKLHGVPVE
                     QLLLGDGSGEVLKLCATAFTSKDKKLVMANPTFEAIGRHAAVAGAEVVKINLTADYHH
                     DLQKMLAAANSAGLIYICNPNNPTASITPRSDVADFLSKLPRQTVVLVDEAYHHYVES
                     SDYESVIPLVKDNPNLIVARTFSKIYGMAGLRCGYCVTQRENVRMMSAHQIFDSVNIM
                     ALVAAVAGLKDPNHVPTGRKLNTEVKRSVCAELDTLGYHYIPSHANFMMIDLRREVRP
                     VIGALRSRNVEVGRTFPALPNFLRVTIGTSSEMKAFMKAFREVMA"
     gene            1662..>2507
                     /locus_tag="VIJ87_10110"
     CDS             1662..>2507
                     /locus_tag="VIJ87_10110"
                     /inference="COORDINATES: protein motif:HMM:NF012363.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase family protein"
                     /protein_id="HEY5444802.1"
                     /translation="MHSRLVRTFAVFSILLIGALHGVASTADVVKTANGPIQGTGRQP
                     SGVRIFKGIPFAAPPISDLRWKEPQPVKNWTDIRKADQFGPRCMQAPVFGDMGFRANG
                     MSEDCLYLNVWTPAKSGKERLPVLVYFYGGGFVAGDGSEPRYDGESMATKGIVSVTVN
                     YRLGVFGFMAHPELTKESPHKSSGNYALFDQNAALRWVQQNITAFGGDPRQVTIAGES
                     AGSVSVSAQMASPLSKDLIAGAIGESGSILGTLSAVPLAQAEEAGVKFAKSIGANSLA
                     ELRALE"
BASE COUNT          590 a          639 c          655 g          623 t
ORIGIN      
        1 agcgtgtggc tcgctgaatt acaagagtcg ctatattcag acaagagcca cacgctgcca
       61 gctctataaa acgcagaggg cacagagacg cagaggacgc ggagccaacc gcagactccg
      121 tcaagaactc ctaggccatt acctctcgga aagctttcat aaacgctttc atctctgaac
      181 tcgtcccgat cgtcacacgc aagaaatttg gcagagctgg aaacgttcta ccgacttcta
      241 cattgcgact gcggagcgcg ccgattactg gtcgcacttc acggcggaga tcgatcatca
      301 tgaaattcgc atgcgatggg atgtagtggt agccgagcgt atcgagttct gcacagaccg
      361 atcgtttgac ttcagtgttc agcttgcgcc cagttgggac atggtttgga tctttgagac
      421 ccgcaaccgc ggcaacgagt gccatgatgt ttacgctgtc aaatatctgg tgtgcactca
      481 tcatcctcac gttctcgcgt tgagttacgc aatagccaca tcgtaaaccc gccatgccgt
      541 aaatctttga aaacgtgcgg gcgactatca ggtttggatt gtctttaact agtgggatca
      601 cgctctcgta gtcgctgctc tccacgtaat gatggtaggc ctcgtcaacc agcacaacag
      661 tctgacgcgg gagtttcgaa agaaagtctg cgacatcgct cctgggggta atactggcgg
      721 tcggattgtt tgggttgcaa atgtagatga gaccggcact gtttgcagcc gcgagcatct
      781 tttgtaagtc gtggtgatag tccgcggtca ggttgatctt gacgacttcg gcgcccgcta
      841 ccgccgcatg acgacctatg gcttcgaacg tcggattcgc cattacaagc tttttgtctt
      901 tactcgtgaa ggccgtggcg cagagtttta aaacctcacc tgacccatcg ccaagcagaa
      961 gttgttcgac gggcacccca tgtagttttg ctaactcttc tgaaagcatg tcagcgtatt
     1021 catccggata gcgccaggcg agactgaagc tatcggtcat tgccttcagt gaagcaggtg
     1081 aaggtccata tggattctca tttgaactaa gccgcacaac tttaggttgg ggatcgccag
     1141 cgctgcttcc cggtaagacc gtcgtccagg atgctttcaa ctcatctatt ggtcgtagcg
     1201 cagcgaatgc agcgcccgct ccgatcactt tggtaaaact acgccgagaa agttttagtc
     1261 ggttagtcat ggtctgttac ctcaaatgcg ctggtcggaa caatgaaaac aagaattagc
     1321 tggcaaggtt tgaattgtac caccttcaga gaagggcagc gggactgtct aactatggaa
     1381 tattacaatt tgggtcctcg attctctctg cttactctgt gttctccgtg tccctttggt
     1441 ggacgttaac ttctacaaca ttaaccagcg cagacacaga gaacatagac tagacaccga
     1501 acaagagaat cattctgatc ggcgtccttc tgcgtatgtc tgcggctaat tctttcgtgg
     1561 gtgctatcga tgaattgtgg attgtcttga acacgcaatt tgaattaatg ttgccgccac
     1621 taattagtca aatttagaca tccgaaatct caggagccct gatgcactca cgtcttgttc
     1681 gtactttcgc tgtgttttcg attcttctta tcggagcact ccacggggtc gccagcaccg
     1741 cagacgtagt caaaactgca aatggtccga ttcaaggtac aggccgacaa ccttccggcg
     1801 tgcgcatctt caaaggcatt cctttcgcag cacctccaat atcagatctt cgctggaagg
     1861 aaccacagcc agtaaagaac tggactgaca tacgcaaggc agatcagttt ggcccgcgtt
     1921 gcatgcaggc accagtcttt ggcgacatgg gattccgcgc caacggtatg agcgaagatt
     1981 gcctgtatct aaacgtttgg actcccgcta agagcggcaa ggaacggctg ccggtgttgg
     2041 tttatttcta cgggggcggt ttcgtcgcgg gtgatggttc tgaacctcgc tacgacggtg
     2101 agagcatggc cacgaaaggc atcgtcagtg tcacagtgaa ctaccggctc ggcgtctttg
     2161 gatttatggc ccatcctgaa ctcactaaag agtcgccgca caaatcgtcc ggcaattacg
     2221 ctctcttcga tcaaaacgca gcacttcgat gggtgcaaca aaacatcact gcttttggtg
     2281 gtgacccgag gcaagtaact attgccggtg agtcagcggg atcagtctct gtgagcgcac
     2341 aaatggcgtc gcctctgtct aaggacctca ttgctggagc gattggtgag agcggttcaa
     2401 ttctcggaac gttatcggca gtgccactcg cccaagctga ggaagcaggg gtgaaatttg
     2461 cgaaaagcat cggcgcaaat tcgctcgctg aattgcgtgc gttggag
//
LOCUS       DATCGC010001036         1194 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_381444, whole genome shotgun sequence.
ACCESSION   DATCGC010001036 DATCGC010000000
VERSION     DATCGC010001036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1194)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1194)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1194
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_381444"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1053)
                     /locus_tag="VIJ87_10115"
     CDS             complement(<1..1053)
                     /locus_tag="VIJ87_10115"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5444803.1"
                     /translation="MHFERGRDYKRATNYFQRAADNAMRRFAYREAVALARKGIELIK
                     KVPDSPDRLAQELCLHLTLGVPLVAIEGYASPNVGSVYLRARELQRQLGDTPDVAEVL
                     WGVWTYYTLRADLRTARETAEEFLRLSQRLSYPGFAMRAHLVMHVTLMHQGEFVPALE
                     HHAQATKLYDPQRHRDDAFFYSQHPGVALRCFEAWTLWYLGKPQQSLERLEEALAIAR
                     ALDEPHGLAHTLLFAAVVHQLRREPKKAQEFAESVLAIAGEHGLAMYRVQASITRGWA
                     LAQHGLSESGINLMRQGIADYKNTGTKLLLAQFLGLLAEALGNAGQTDEGLREVDEAL
                     NVAGSSEDASYLAELHR"
BASE COUNT          283 a          346 c          294 g          271 t
ORIGIN      
        1 ccggtggagt tccgcaagat atgaggcgtc ttcgctagaa ccagccacat tcaacgcctc
       61 gtcgacttcg cgaagtcctt catcagtttg acctgcgtta cccagtgctt cagcaagtaa
      121 gcccagaaac tgtgcgagca atagtttagt tccagtgttc ttatagtcgg caataccttg
      181 ccgcatcagg ttgattccgc tttcagagag accatgctga gccagcgccc atcctcgcgt
      241 gattgaagcc tgcactcgat acatcgccag gccgtgttca ccggcaatcg ccaaaacact
      301 ctccgcaaac tcctgggcct ttttgggctc tcgccgaagt tgatgcacta ctgctgcaaa
      361 caaaagcgtg tgtgctaatc catgtggctc gtctaatgct cgcgcgatag ccagagcttc
      421 ttccaaacgc tcgagtgact gctgaggttt gccaagatac caaagcgtcc aggcttcaaa
      481 gcatcgcagt gctacgcccg gatgttgaga atagaagaag gcatcatcgc ggtgacgttg
      541 gggatcgtag agctttgttg cttgcgcgtg gtgttcgagc gctggaacaa actcaccttg
      601 atgcatcaac gtgacatgca tcaccaggtg agcacgcata gcgaaacctg gatacgacaa
      661 tcgttgactc aaacgaagaa actcttcagc ggtctcccgt gcggtccgca aatccgccct
      721 caacgtgtaa taggtccaca cgccccagag aacttccgca acgtctggag tgtctcccag
      781 ttgccgctga agttcgcgcg cccttaagta aacactccct acgtttggag acgcatagcc
      841 ctcaatggca accaatggca ctcccaaagt caggtgcaaa caaagctcct gggcgagtcg
      901 atcaggactg tctggtacct tcttgatcag ttcaatcccc ttgcgcgcaa gcgctaccgc
      961 ctcacgataa gcaaacctgc gcatggcgtt atcggcagct cgttgaaaat agttcgtcgc
     1021 ccgtttgtaa tctctgccac gctcaaaatg catggccaat tctccagcga tctcgccgac
     1081 tctgtctcca taaacttcct cgccgcgttc gccaatacgg cggtggagtt gaaagcgacg
     1141 agatggcggt atccgttcat acaagacgtt ttgataaaga gcgtggacga aacc
//
LOCUS       DATCGC010001037         2056 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_482110, whole genome shotgun sequence.
ACCESSION   DATCGC010001037 DATCGC010000000
VERSION     DATCGC010001037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_482110"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..536)
                     /locus_tag="VIJ87_10120"
     CDS             complement(<1..536)
                     /locus_tag="VIJ87_10120"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5444804.1"
                     /translation="MNKAISVALLSLSVTSYALAGAQKTAEISKPAEQSSLSKNQTRP
                     NTELAGIPATDVATESQRRYDSAMALTEAGRLDDAISAFKQLLKAQPQDAQLHFGMGM
                     TYSKAKAFKDAFESFRKAVHYKPEWPEAHFRLGVMSYVLGKKAQANDEYKNLVQLNSP
                     LGSVLYRIIKDDSAPTELG"
     gene            842..>2056
                     /locus_tag="VIJ87_10125"
     CDS             842..>2056
                     /locus_tag="VIJ87_10125"
                     /inference="COORDINATES: protein motif:HMM:NF016354.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF512 domain-containing protein"
                     /protein_id="HEY5444805.1"
                     /translation="MYEFAVTPAVTNIRRRGVEIAEVAPESLGAEMDIEPGDRIVKVN
                     GRTVRDYLDFRFHTAGETELILEVRKKSGEDWEVELERSENEDFGFTFEQIVPRQCAN
                     ECIFCFCNGNPADARPSLFIKDEDVRLSFLYGNYTTLTSITDDEMQRIVEQGLTPQYV
                     SVHATDLDVRAYLLGVDKKRADISKKMKRLLDAGIQVHAQVVLCPKINDGEVLLKTID
                     DLAAEYPRITSVAIVPLGLTRYNTDSRLAAVTPEFCRDVINQLEPVQQKLKARLGTNF
                     ALLGDEFYLKAGYSIPSRSHYGDYPQIEDGVGMVRAFHEDFAKLQKRLARKGSTQVKK
                     FPGTIFTGTLFAPVLKNAIDKLNAKIGTKLFVSPIDNGYFGGDVSVAGLVTGRDLKAA
                     RDLIRGDFVLIPR"
BASE COUNT          519 a          471 c          534 g          532 t
ORIGIN      
        1 ccaagttctg tgggtgctga gtcgtctttg attattcggt aaagaacgct tcccaacggc
       61 gaattcaact gaacgagatt cttatactcg tcgttcgctt gagccttttt cccaagaacg
      121 taagacatga caccaagacg gaaatgggcc tcgggccact ctggtttgta atgcacggct
      181 tttctgaaag attcgaacgc atccttgaag gcttttgctt tcgaataagt catgcccatt
      241 ccgaaatgta gttgcgcatc ctgtggttgg gctttgagca actgtttgaa cgcactgatt
      301 gcgtcgtcga gtcgtcccgc ttcagtcaac gccattgccg agtcataacg tcgctgcgat
      361 tccgtagcaa catcagttgc gggaattcca gctagctcgg tgttgggcct ggtttgattc
      421 ttcgaaagag atgactgttc cgctggtttg gatatttctg ctgtcttttg cgcaccagcg
      481 agagcataag aggtgacgga tagggagaga agagcgactg aaatggcttt attcatggcg
      541 ttgattctga gactgaaatt ccgacttccg gtatgatttc gaagcgcagc gtcttgcgtg
      601 gttacaattg accccgaatt atacacgatt gactaagaac gttaagcccg cacgtctgtc
      661 ctagattccg agtacctaat aacgttgtag aaggcgaata caagctgcct tccaaatttg
      721 agttttgact caagcaggcg ctcaacaaag ctcgcggggc tctgttatag tgactggttc
      781 gctatggcct caactttata accggggagg cccggggcac atttgataga catctgaagt
      841 tatgtacgag tttgcagtca caccagcagt tactaacatc cggcgacgcg gcgtcgaaat
      901 cgctgaggtt gcgcccgaaa gtctgggtgc ggagatggac atagaacctg gcgaccgaat
      961 cgttaaggta aacgggcgaa cggtacgcga ctacctggat tttcggttcc acactgctgg
     1021 cgaaacggaa ttgattctcg aggttcgaaa gaagagtgga gaagattggg aagtcgaact
     1081 ggaacgatca gaaaacgagg actttggatt tacattcgaa cagattgttc ctcgccaatg
     1141 tgcaaacgaa tgtatctttt gtttttgtaa cggcaatcca gctgacgcgc gaccgtcgtt
     1201 gtttataaaa gacgaagacg ttcgcttgtc gttcctctac ggcaactaca caacgctgac
     1261 atcaataacc gacgacgaga tgcagcgaat cgtcgagcag ggattaacgc cacaatacgt
     1321 ttctgttcat gctactgatc ttgacgtgcg cgcatacttg ctgggcgtcg acaaaaagcg
     1381 agccgacatt agtaagaaaa tgaaacgctt gcttgatgct ggtattcaag ttcacgctca
     1441 agtggtcctg tgtccaaaaa ttaatgacgg cgaggtgctc cttaaaacga tcgatgactt
     1501 agccgctgag tatccccgga tcaccagtgt ggcgatagtt ccgcttggtc tgacgcgcta
     1561 caacacagac tcaagacttg cagcagtgac tcctgagttc tgtcgcgacg tcatcaatca
     1621 actcgaaccg gtccagcaga aactcaaggc tcggcttgga acaaacttcg ctttgcttgg
     1681 cgatgagttt tatctgaagg cgggttattc aattccatct cgatctcatt atggcgacta
     1741 ccctcaaatc gaagatggcg ttggtatggt gcgagctttc cacgaagact ttgcgaaact
     1801 gcaaaagcgt cttgcaagaa aaggatcaac ccaggttaag aagttccccg gaacgatctt
     1861 tacaggaact ttgtttgcgc cagtattgaa gaatgcaatc gacaagttga atgcaaagat
     1921 tggaacgaaa ctttttgtca gtccgatcga caacggttat tttggaggcg acgtttcggt
     1981 tgccggactg gttaccggta gagatttgaa ggccgcacgc gatctgattc gaggtgactt
     2041 tgttttgatc cccagg
//
LOCUS       DATCGC010001038         2095 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_49240, whole genome shotgun sequence.
ACCESSION   DATCGC010001038 DATCGC010000000
VERSION     DATCGC010001038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2095
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49240"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1175
                     /gene="ald"
                     /locus_tag="VIJ87_10130"
     CDS             <1..1175
                     /gene="ald"
                     /locus_tag="VIJ87_10130"
                     /EC_number="1.4.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000286 - alanine dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006522 - alanine metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alanine dehydrogenase"
                     /protein_id="HEY5444806.1"
                     /translation="FHISLLSRRIKAVIVGLPKEIKDNEYRVGLTPAGVRALKDGGHE
                     VITEKSAGEGSGFEDSLYQRAGATIIDSADDIWAKADMIVKVKEPIAPEYPRMREGQL
                     LFTYLHLAPDHELTKQLVERKITGIAYETITDRRGTLPLLTPMSEVAGRMAIQVGAHY
                     LEKMSGGRGILLGGVPGVPAARVVIIGGGVVGTNAAKMAVGMGAHVTIIDNNLDRLRE
                     LDDIFLSKISTLASSAYMIQDAISQADLIVGAVLVPGAAAPKLITQKMLKEVPNGAVI
                     VDVAVDQGGCIETTHPTTHSNPTYYVEGVLHYCVANMPGAVPRTSTFALTNATLPYAL
                     KLANKGFYAAIHSDSGLKEGVNTYGGHCTYEAVASAQGIPFTPLDQLINSSSGATV"
     gene            complement(1300..1725)
                     /locus_tag="VIJ87_10135"
     CDS             complement(1300..1725)
                     /locus_tag="VIJ87_10135"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5444807.1"
                     /translation="MISQEEFKITQSQTVNPADASGVSGCVVLAEDDPALQRYLEVVL
                     QRAGYEVLLAADGLEAMRILMSRPVDIVVTDALMPNLNGYELCRFVKSSPRLSGLPIV
                     LLSALDPKNAEAEQVDAFLTKPVSPEDLLECLSSLMVAD"
BASE COUNT          537 a          545 c          524 g          489 t
ORIGIN      
        1 aatttcacat ttcgttatta agccggagga ttaaagccgt gattgtcggt ctgccgaaag
       61 aaataaaaga caacgaatac agagtagggt taacgccagc cggtgttcgc gccctcaaag
      121 atggtggaca cgaagtcatc acggagaaga gtgctggtga aggatcgggc tttgaggatt
      181 cgctttacca gcgcgctgga gccaccatca tcgactccgc ggatgacatc tgggctaagg
      241 ccgacatgat cgtgaaagtg aaagagccaa ttgcgccgga gtatccacgc atgcgcgaag
      301 gacagcttct ctttacgtac cttcacctcg ctcccgatca cgaactcaca aagcagttgg
      361 ttgaacgaaa aataactggc atcgcgtacg aaacgatcac cgatcgacgc ggcacattgc
      421 ctttgttaac tccaatgtcc gaggtcgcgg gtcgcatggc aatccaggtt ggcgctcact
      481 atctcgagaa gatgagcgga ggccgtggaa ttctgcttgg tggtgttccg ggcgttcctg
      541 ctgcgcgcgt tgtgatcatc ggaggcgggg tggtcggcac taacgctgcg aagatggccg
      601 taggtatggg tgcccacgta accatcattg ataacaatct cgacaggctg cgcgaacttg
      661 acgacatttt cctttcaaag atttcaacac tggcttcaag tgcttacatg atccaggatg
      721 cgatatcaca ggcagacctg atcgtaggcg cagtcctggt gcccggagca gcggcaccca
      781 agttgattac tcagaagatg ctgaaggaag ttccaaacgg tgcagttatc gtcgatgttg
      841 ccgtcgatca aggcggatgt attgagacta cacatccaac gacacattca aatccaactt
      901 actacgttga aggtgtcttg cattattgcg tcgccaacat gcctggtgct gttccacgca
      961 cttcaacttt cgcactcacc aatgcgactc tgccgtacgc tctgaaactt gccaataagg
     1021 gtttctatgc agcgatacac agtgatagcg gtttgaagga aggcgtaaac acttacggtg
     1081 gtcactgcac ctatgaagca gttgcgtccg cccagggaat cccattcacg cctctcgatc
     1141 aattgatcaa cagctctagc ggcgcaacgg tctagacttt gtcggggcgg cactccatgg
     1201 ccgccctttt ttcatttcct cttaccaaaa ccaggctctt aaaaaccgaa ggggtggcca
     1261 cagagtgcca cccctacaaa gtttgttctt aactaaatcc tagtctgcga ccatcaaact
     1321 cgacagacat tccaacaaat cttcaggcga cactggcttt gtgagaaacg cgtcgacttg
     1381 ttctgcttca gcattcttgg gatcaagggc gctgagcaaa actattggca atccagaaag
     1441 ccgcggactg cttttcacaa accgacataa ctcatatccg ttcagattag gcatgagggc
     1501 gtccgtcacc acaatatcaa cggggcgact catcaagatc ctcattgctt ccagaccatc
     1561 agctgccaga agcacttcgt accccgcccg ttgcagaacg acttcgagat agcgctggag
     1621 tgccgggtca tcctcggcca gaaccacaca accagacaca cccgaagcgt cagcaggatt
     1681 gacggtctga ctctgggtta ttttgaactc ttcctgtgaa atcattaaat tgacaacggc
     1741 ccggggagtt tcttcgaggc cgtgaggggc ttcggaaggt cgaaccggat aagcatccgg
     1801 gttaaaagca gattaaacgt cgttggccgt agttgtcaac gcgaatgtcc gatatgcttt
     1861 agcttgtcgt gacttcagaa cactattcag cccgaggagc gataatctaa ggggctcttg
     1921 aaaaaatccc acaaacggct gtttgtggat gcttcaaatc cagctcacaa actcggaacg
     1981 cactactgtt ctaatcccac aaacggcagt ttggaggatt gttctttttt tccagcggtc
     2041 ctgacttttg caagagcctc taaagggtaa taatatactt gacgaatcaa gcaat
//
LOCUS       DATCGC010001039         1650 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_248600, whole genome shotgun sequence.
ACCESSION   DATCGC010001039 DATCGC010000000
VERSION     DATCGC010001039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1650)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1650)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1650
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_248600"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..183)
                     /locus_tag="VIJ87_10140"
     CDS             complement(<1..183)
                     /locus_tag="VIJ87_10140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444808.1"
                     /translation="MKPLFLLVAFVLTVGVADAQKTATPKQVLHDFRANTTTQPSKIS
                     PATQKFVLSKVFRKYLS"
     gene            complement(305..682)
                     /locus_tag="VIJ87_10145"
     CDS             complement(305..682)
                     /locus_tag="VIJ87_10145"
                     /inference="COORDINATES: protein motif:HMM:NF013777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY5444809.1"
                     /translation="MTIGKSAKKKAAAKRAVKPVKPEESSQVCSRFHHAVELIGRRWS
                     GAIISSMISRPRCFNEFFAAVPGLSDRLLTQRLRELESEGLVRRTVIAGPPVRVSYEL
                     TESGKDLEPAIEALGTWAEKWVD"
     gene            913..>1650
                     /locus_tag="VIJ87_10150"
     CDS             913..>1650
                     /locus_tag="VIJ87_10150"
                     /inference="COORDINATES: protein motif:HMM:NF014708.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HEY5444810.1"
                     /translation="MADKRIRAVSGIINSIETLEGEGFLVHRPFPTYALSDFDPFLLL
                     DEMGPKDLAPGEAKGAPDHPHRGFETVTYMLEGRMQHKDSHGNAGKLTPGDVQWMTAG
                     AGVVHSEMPEQEFSKNGGRLHGFQLWVNLPKRDKMMQPRYQEIPASRIPVATSADGLV
                     SVRVIAGESLGVKAVIETRTPIMYLHFTVKPGGQITQAMESTFNGFAYVVSGEGLFGV
                     DEEKATRGQMIMFEREGKAVSIKNDSDE"
BASE COUNT          397 a          387 c          474 g          392 t
ORIGIN      
        1 agacaagtac ttgcgaaaga cttttgagag gacgaacttc tgcgtcgctg gcgaaatctt
       61 cgacggttga gtagtcgtgt tggcccggaa gtcgtgaaga acttgtttag gtgttgctgt
      121 cttctgggcg tctgcaacgc caactgttag aacaaaggcg acgagaagaa agaggggttt
      181 catctgggcg tttcctttcc gtttttgttg ttggaatgat acaggagcga gaggcagaag
      241 gcagcggcag taggcaggag caggagcagg aggcagtgcg ctaagcggct tgttcaatct
      301 gcaattagtc gacccacttc tcagcccacg tacccagcgc ttcaatagcc ggctccagat
      361 ctttgcccga ttcagttaat tcataactga ctcgaaccgg cggaccggcg atgactgtcc
      421 gacgcaccag gccttctgat tcaagttcgc gcaagcgctg agtcaacaag cgatcggaaa
      481 gcccgggcac ggcggcaaag aattcattga agcaccttgg ccgcgaaatc atcgaactga
      541 tgattgcccc actccagcgt cgcccgatca actccactgc gtggtgaaat cgtgagcaca
      601 cctgcgacga ctcttcaggt ttcacaggct taacggcgcg cttggccgct gccttctttt
      661 ttgctgattt tcctattgtc acctctggtc acttaccttt cgttgcctac ttgacaaacg
      721 taagtctgct accttatctt gatgccgagc ttactaaaag taagttggct atgcaacgtt
      781 gatgaggctt tggggtgcgg cggcctggcg ccgccttggc gaaagagggt atcaccgagg
      841 gaattgttta ccagggcggc gccaggtcgc ggcactccaa agaggtcaat atttagagag
      901 ggatctattt caatggctga taagagaatt agagctgttt cagggattat caatagcatc
      961 gagacattgg agggcgaagg ttttctcgtg catcgaccct ttccaactta tgcactttct
     1021 gatttcgatc catttttgct gttagatgaa atggggccaa aggatttggc acctggtgag
     1081 gccaaggggg cacccgatca cccacatcgt ggatttgaaa ctgtcaccta catgcttgaa
     1141 ggacgcatgc agcataaaga ttcgcatggt aatgccggca agctgacgcc tggtgacgtg
     1201 cagtggatga cagcaggtgc aggtgtggtg cactccgaaa tgcccgagca ggagttttcg
     1261 aaaaatggcg gacggctaca cggatttcaa ttgtgggtga accttcccaa gcgcgacaag
     1321 atgatgcaac cgcgatatca ggagattccc gcgtcaagaa ttcccgttgc cacgagcgct
     1381 gatggtttgg taagtgtacg agtgattgct ggtgagtcgc ttggtgttaa ggccgtaata
     1441 gaaacgcgga cgccaatcat gtatctgcac ttcactgtga agccaggcgg gcaaataacc
     1501 caggccatgg agtcaacttt caatggcttt gcatatgtgg taagcggcga aggcttgttt
     1561 ggcgtcgacg aggagaaagc gacacgtgga cagatgatca tgtttgagcg agaaggcaaa
     1621 gcggtcagta ttaagaacga ctccgatgag
//
LOCUS       DATCGC010001040         1223 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_281769, whole genome shotgun sequence.
ACCESSION   DATCGC010001040 DATCGC010000000
VERSION     DATCGC010001040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1223)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1223)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1223
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281769"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(893..>1223)
                     /locus_tag="VIJ87_10155"
     CDS             complement(893..>1223)
                     /locus_tag="VIJ87_10155"
                     /inference="COORDINATES: protein motif:HMM:NF039391.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF6265 family protein"
                     /protein_id="HEY5444811.1"
                     /translation="KPEGQAMLGFGRTIKNNKMVFYEFLQIREEMGGLVYLPQVKGAP
                     PVPFRMTAYDNDKFVFENPSHDFPQRIIYQRQNLMLLAAIEGLQKGKPVREEYLMKRV
                     RCNDLAN"
BASE COUNT          299 a          306 c          274 g          344 t
ORIGIN      
        1 tatcgtcgaa cctaacgggc atctagaaac atcctgacag gagtcaggtg gggagcactt
       61 tttgaagaag acttcgcctt tagacaggcg gccaaagtac tttccagagt taattcgttc
      121 ggagaatggt ggataatcta ccaccctaga ttgccgaatc aaactcacga cggacgaagt
      181 tttcattttc gacaagtggc ttacgatttt ttacgcggcc gaagtttcaa gcatgtgaca
      241 gacggaaact ttgcgggatg gacgagtgaa ttttcgggat ggaggagtga atacgccaaa
      301 aaacgaaatg cgctactcac agcaagctgc aggtagcgca atccgtttat cctacaaatc
      361 gccgaagctt tctataggac ggtaacaaga acatgtacac gttctagtca cctaatttgt
      421 atcccggtta ccgactggcg gtcagtttgg tctccggtca gcactcgaat cattttcaca
      481 atcctcgcat tctttcgaat acggtgccgt taggtttttt ttgtggtggc ttttcctcca
      541 ccgccggtta cgacccggca acgaagctca acttgcgtcg agctgctgtg cgcccttaag
      601 cgggtccttg cctcagggtt ccactcgttt ttatccgagt ggctcgagaa agtctcgcaa
      661 ccttctctag ctgaaccttt cggttccaac tcagggcgtc atggaatcaa cagccgcctg
      721 tcttttccct cgctcgggcg tcaccgcacc gattgccgat ccctttgtcg gtctcaaacg
      781 ccgtaacgtt cgtgacagga tgcttatacg cttccatcag ttttagatca aacttttgcg
      841 tgttttattt ttgagaaaaa cagaaaacga tcttgactca gcaaatcact aattagttcg
      901 caaggtcgtt acatcgaact cgcttcatca aatactcttc gcgaaccggt tttccctttt
      961 gtagtccttc gatcgctgcg agcaacatca agttttgacg ttgataaatt atccgctgtg
     1021 gaaaatcgtg tgatggattt tcaaaaacaa acttgtcgtt gtcgtaagca gtcattcgaa
     1081 atggaactgg aggcgcgcct ttcacttgcg ggagataaac caaacctccc atctcttcac
     1141 gaatttggag gaactcataa aaaaccatct tgttgttctt tatcgtcctg ccaaacccga
     1201 gcatcgcttg tccttcaggt ttt
//
LOCUS       DATCGC010001041         1445 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_482187, whole genome shotgun sequence.
ACCESSION   DATCGC010001041 DATCGC010000000
VERSION     DATCGC010001041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1445)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1445)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1445
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_482187"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..489
                     /locus_tag="VIJ87_10160"
     CDS             <1..489
                     /locus_tag="VIJ87_10160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444812.1"
                     /translation="SRWDELTAEYEYLEAQDTQVRFLTNRTGFSADAVSRVLVHLTPA
                     IFGEEWDIEAQARDAGMSVEDYGLAMSPLLQMSMEQAQARLHEVEAQLARGDNPEPTV
                     DELEKVRKFETIVGKITRLSGQRPDVVVAILFAVSVLKNRQREIIQELARLKALGGGP
                     SG"
     gene            complement(509..856)
                     /locus_tag="VIJ87_10165"
     CDS             complement(509..856)
                     /locus_tag="VIJ87_10165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444813.1"
                     /translation="MGSTPKALGILMTFLLVIGLSVAVQAASMPSAADDKKADQSETT
                     DGQMQKTIQGDVIRIDGNNYVIEGVDGKEVKLYTDNNTVMSDQIFPRDRIEAKITEKN
                     QALSMFPIFRVAP"
BASE COUNT          348 a          364 c          363 g          370 t
ORIGIN      
        1 tcccgatggg atgaactcac ggccgaatat gaatacttgg aggcgcagga cacgcaggtc
       61 cgattcctta ctaaccgcac aggtttttca gctgatgccg tcagccgggt gctagtccat
      121 ctcactccgg ccatattcgg cgaagaatgg gacatcgagg cccaggcacg ggacgcaggg
      181 atgagcgtag aagattatgg gctcgccatg agtcccttac tacagatgag catggaacag
      241 gcacaggccc gcctgcatga ggttgaagca cagctcgctc gtggggacaa tcccgagccc
      301 acggtcgatg agcttgaaaa ggtcaggaag tttgaaacga ttgtggggaa gatcaccaga
      361 ttgagcggcc agaggcccga tgtcgtggtg gcaattttgt tcgcagtcag tgtgttgaag
      421 aatcgccagc gtgaaatcat acaagaatta gctcgcctga aagccttggg aggaggtccg
      481 agcgggtagg gcctgtcttc cattcatgtc agggggcaac tcgaaagatt gggaacattg
      541 aaagcgcctg gttcttctca gtgatcttgg cctcaatgcg atctctaggg aaaatctggt
      601 ccgacatcac ggtgttgttg tccgtataca atttgacttc tttcccgtct accccttcaa
      661 taacatagtt attgccatca atccgtatca cgtcgccctg aatggtcttc tgcatctgcc
      721 catccgtagt ctcagattga tccgctttct tgtcgtctgc agcagaaggc atactagcgg
      781 cctgcacggc aacagaaagt cctatgacaa gcaggaatgt catcaaaatg ccgagagctt
      841 tgggagtcga tcccacgact gcctcctctc atatgtgtgc ccgataaaac cttttgcaca
      901 ccatgtttcg ttacttgaat ggtcccagcc agtgtttttc attgggcctc ctgaagaagc
      961 cttaatttat tgcatggtca gaaaagtggg tactaggaac atcccacggc tcagttaatt
     1021 gaccaggcgt agtaagccgt gtagcggaat tcggtgagag ccacgcgcgc tagggattac
     1081 cccagtcgat tagaattata gagaagatta cattgagcgg tcttacgaaa atcgaattcc
     1141 gtgtatacct ctatgacaaa ggtagttctc atctgtattt tgtgtcttgg cgtactcctc
     1201 caaatcttgg gggctccgat tagcttttcc aacttagatg agacatatga tccagcttat
     1261 gaattacaat taaccgcagc taccatgatc tcccgccttt ctgcagactg ccatgacaga
     1321 tcctctttta gacgcgacga accctatggg caactctatt cttctgtata tggatcccgt
     1381 atctttcacc ctcccctgta acccgctcag taaagatcag ctttgtatat ctgggctgct
     1441 gccgg
//
LOCUS       DATCGC010001042         1835 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_281819, whole genome shotgun sequence.
ACCESSION   DATCGC010001042 DATCGC010000000
VERSION     DATCGC010001042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1835)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1835)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1835
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281819"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..678
                     /locus_tag="VIJ87_10170"
     CDS             <1..678
                     /locus_tag="VIJ87_10170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444814.1"
                     /translation="ILAKTDEKDWLLKRLHVFTQDALAPLRMDNGLSFVRDFERLLGE
                     DFFRKVKSFNSIKTDAEDLEAELGKYVERLESLGGIDLFFLGLGPEAGGASHLAYIKP
                     GSGATFNDVAGMIPISESILEHHITKFKAGGTAVSEADEAECRAAKHILTLGPAAIMA
                     ARRIVQSIVDASTAPAKRESYRRLLNTEISSDLEQREKQLDENPGLWLRVHPNVRSLI
                     LADVLEN"
     gene            693..>1835
                     /locus_tag="VIJ87_10175"
     CDS             693..>1835
                     /locus_tag="VIJ87_10175"
                     /inference="COORDINATES: protein motif:HMM:NF016203.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HEY5444815.1"
                     /translation="MSSIEISQPAAIGEYAIIVDPNDNVAVVKKSTFADLEVLLPNRS
                     SVQIRGAVPPGHRFATRDIPEGDFVLQFGQPIGTSLGIKAGEQITHGNMTNDVPIVRD
                     LPESLHTPAPDYLPVDERATFMGYKRPDGRVGTRNYLLIVPTSMCASHEAQQISTIAE
                     FTLYNKQKYPNVDGVVAIPHNKGCGCQDGSTIDVMLRTLSNYADHPNVGGVILIDLGC
                     EKTNLAQVERYLLKREKAFDKPVAKIGIQDVGGTESAIQRGLREVEAMLPAVNETARE
                     EVSVSELVLGVKCGGSDGFSGISANPSLGRAADWLVRSGGTVLITEVPEFCGAEHLLA
                     NRAKDVETGRAVYRMVDWYKDYASKFGAVLNNNPSPGNIAGGLLNIT"
BASE COUNT          449 a          458 c          506 g          422 t
ORIGIN      
        1 atcttggcaa agactgatga aaaagattgg ctgcttaaaa gactacatgt cttcacccag
       61 gacgcgcttg ctccgttacg aatggataac ggcctaagtt tcgttcgcga ctttgaacgc
      121 ctgctgggcg aagatttctt ccgcaaggta aaaagtttca attcgataaa aactgacgcg
      181 gaagatctgg aagctgaact cggcaagtat gtcgaaaggc tggagtcgct cggtgggatc
      241 gatctcttct ttctgggatt agggcccgag gctggtgggg cttcacacct cgcgtacatc
      301 aagccaggtt caggagctac tttcaacgac gtggccggga tgatcccgat ttcggaaagc
      361 attcttgagc accacatcac taagttcaaa gctggaggca cagcagtgtc tgaagctgat
      421 gaagcggagt gccgggcagc gaaacacata ctgactctgg gtccggcagc gatcatggct
      481 gcgcgtcgta ttgtgcagtc catcgtcgac gcgtcaacag cgccagccaa acgtgaaagc
      541 tatcgccgat tgttgaatac ggagatcagt tcagacctgg agcaacgcga gaagcaactc
      601 gacgagaacc cagggttgtg gttgcgagtc catccaaacg tgcgatcgct catccttgca
      661 gatgttttgg aaaactagcc gtcaggaaaa ttatgtcgag cattgaaatt tcacagcctg
      721 ctgcgatcgg tgagtacgca atcattgtcg acccaaatga caatgttgcc gtagtcaaga
      781 aatcgacttt cgctgatctc gaagttctat taccaaacag atcgtccgtg cagatccgcg
      841 gcgccgtacc tcccggacac cgcttcgcta cgcgcgatat tcctgaaggc gattttgttt
      901 tgcagtttgg ccaacctatc ggtacgtcac tcggtatcaa agcaggcgag caaataacgc
      961 acggaaatat gaccaacgat gtgcctatcg ttcgggactt gccggagagt ttacatactc
     1021 ctgcgccgga ttatttaccg gtcgacgaac gagcaacgtt catgggatat aaacgtccgg
     1081 atggacgcgt ggggacccgc aactacctgc taatcgttcc aaccagcatg tgcgcgagtc
     1141 atgaggcaca gcagatttcc accatcgcag agtttactct ctacaacaaa cagaagtacc
     1201 caaacgtcga tggcgtcgtc gcgataccac acaacaaggg ctgtggttgt caggacggtt
     1261 ccacgatcga cgtcatgctg cgaaccctat ccaactacgc cgatcatccc aatgttggcg
     1321 gcgttatctt gattgatctc ggttgtgaga aaacgaatct tgctcaggtt gagcgctatt
     1381 tgctaaagcg cgagaaggcg tttgataagc cggtggcgaa gattggcatc caggatgtgg
     1441 gtggcactga atcagcgatc cagcgtggct taagagaagt cgaagccatg ttgcctgcgg
     1501 taaatgagac tgcacgcgag gaagtttctg tcagtgagtt agtgcttggt gtgaaatgtg
     1561 gaggctccga tgggttctcc ggtatttccg caaacccgtc attgggccga gctgctgatt
     1621 ggttagttcg ttcgggcggc actgttctga ttaccgaggt tcctgagttc tgtggcgctg
     1681 agcacctcct ggcaaaccgc gcgaaagatg tcgaaacagg tcgcgccgtt taccggatgg
     1741 ttgattggta caaagactac gcctcgaagt ttggcgcggt gctgaacaac aatcctagcc
     1801 cgggaaacat cgccggcggt ctactcaaca tcacg
//
LOCUS       DATCGC010001043         1148 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_83854, whole genome shotgun sequence.
ACCESSION   DATCGC010001043 DATCGC010000000
VERSION     DATCGC010001043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1148)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1148)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1148
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83854"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            41..>1148
                     /locus_tag="VIJ87_10180"
     CDS             41..>1148
                     /locus_tag="VIJ87_10180"
                     /inference="COORDINATES: protein motif:HMM:NF036516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444816.1"
                     /translation="MSRPVSHLFEVSIEVALPADFKEQSVSFQMPKWSPGRYAVFDFA
                     KNVQEVRATAGICPPAAQCKMAPRPVTRVDDQTWSVATQGSQTLSLSYKVFGNDLSGT
                     FSQLDERHANYNGGSIFMYIVEHKPDPVKLVIDPPAGWKIVNGRTQHPGQTEWLFPNW
                     DIMIDTPTEIAPDWTLDNFEVNGKKYHVMVHSFGAEGGKRPALVKDIEKIVRAETEMW
                     GPPEFDEYTFLVHFAADDESGDGMEHLTSTQIIEPGALGEAGTYDDTLGTVAHEFFHV
                     WNVKRLRPYELGPWDFTKPLSPRGLFVAEGFTNYYGHLMLRRAGLLDDAQFLRREART
                     ISGIENASGTQLMSAVESSLSAPFLDDAPHAQKTN"
BASE COUNT          283 a          304 c          301 g          260 t
ORIGIN      
        1 cgcgcagcag cctttcagcg cgataacata tcggctttca atgtcgcggc cagtctcaca
       61 tcttttcgaa gtctcaatcg aagtagccct gcctgctgat ttcaaagaac agtcggtgtc
      121 atttcagatg ccgaaatggt cgcccgggcg atatgcagtt tttgactttg cgaagaacgt
      181 gcaggaagtt cgtgccacag ccggaatttg tccacccgcc gcacagtgca agatggcgcc
      241 gcgaccagtc acccgcgtcg acgaccaaac gtggagtgtt gcgacgcagg gaagccaaac
      301 gctgtcgcta tcgtacaagg tattcggtaa cgacctatcg ggcacttttt cacaactcga
      361 tgaacgacat gcgaattaca acggcggctc aatcttcatg tacatcgtcg aacacaaacc
      421 ggatccggtg aaactcgtca tcgatccacc cgctggttgg aaaatcgtaa acggccgcac
      481 tcagcatccc ggacaaactg aatggttgtt tcccaactgg gacatcatga tcgatacgcc
      541 gaccgagatc gcacctgatt ggacgctgga caactttgaa gtcaatggca agaaatacca
      601 tgtgatggtt cattcgttcg gcgctgaagg agggaagcgt ccggcacttg ttaaagacat
      661 tgaaaagatt gttcgcgccg aaaccgagat gtggggacca cctgagtttg atgaatacac
      721 ctttctggtc catttcgctg ctgacgatga atctggtgat ggaatggaac atctgacatc
      781 gactcagatt attgaaccag gcgcgctcgg tgaagcgggg acctacgacg atactcttgg
      841 aaccgtagcg cacgagttct ttcacgtttg gaacgtcaaa cgcttgcgtc cctatgaact
      901 aggtccatgg gattttacga agccgctcag ccctcgcggt ttgtttgtgg ccgagggatt
      961 cacgaactac tacgggcact taatgcttcg acgggcaggt ctcctggacg acgctcagtt
     1021 tctaagacgc gaagctcgca caattagtgg aattgaaaac gcttcgggca cccagctaat
     1081 gagtgcagtg gagtcgtcac tttctgcgcc atttcttgac gacgcgccgc acgctcaaaa
     1141 gacgaacc
//
LOCUS       DATCGC010001044         1036 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_347023, whole genome shotgun sequence.
ACCESSION   DATCGC010001044 DATCGC010000000
VERSION     DATCGC010001044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1036)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1036)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1036
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_347023"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..485)
                     /locus_tag="VIJ87_10185"
     CDS             complement(<1..485)
                     /locus_tag="VIJ87_10185"
                     /inference="COORDINATES: protein motif:HMM:NF012686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444817.1"
                     /translation="MVFWFVILYLLLSVGIGLFAATRVQNSKDFAVAGRSLPLPIVAA
                     TVFATWFGAEAVLGISATFVKEGLRGVVADPFGSSMCLVLAGLFFAPRLYRLNMLTVG
                     DYYRYRYNRTIEVLCTLCIVASYLGWVAAQFKVLGLVLNVVTEGSVSQSLGIVIGAAI
                     VL"
     gene            complement(732..>1036)
                     /locus_tag="VIJ87_10190"
     CDS             complement(732..>1036)
                     /locus_tag="VIJ87_10190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444818.1"
                     /translation="EERVSEQKVCAYSLCESLDGQRVTIEQGEVYCINRSEHGILVLM
                     GGRPRKHQLLELHVAETRLEYSLSLYEVQWTKILPVESQGELFLVGCRLVFGASRY"
BASE COUNT          282 a          298 c          260 g          196 t
ORIGIN      
        1 agaacaatcg ctgcgccgat cacgattccg agcgactggc tgacacttcc ctccgtcacg
       61 acattgagca ccaaccccag cactttgaat tgggccgcaa cccagcccag gtacgaggcg
      121 acgatgcaga gcgtgcacaa cacttcgatg gtgcggttgt agcggtaccg atagtaatcc
      181 cccaccgtca gcatattgag tcggtacagg cgtggagcaa aaaacagtcc ggcgagcacc
      241 agacacatac tagacccgaa tggatcagcc acaacgccgc ggagcccctc tttgacgaag
      301 gtcgctgaga tacccaatac cgcttcggca ccaaaccagg tcgcaaacac ggtcgccgct
      361 acaatgggta aaggcaggct cctcccggca acggcaaagt ccttggagtt ctgcactcgt
      421 gtcgcggcga aaagtccgat gccgacagaa aggagaagat agaggatgac gaaccagaag
      481 accacgcgcg caggatacgg ccataccggc gagcaatcaa tcagtattca taatcttgcg
      541 cagggaagat tgatcagcga tttcgaaaga ccagaggaag gttggaaatg gctaactgat
      601 ttcagacttc ctaacgaatc gcaggtggaa gagtgtccta gaactagtcg ggggttgcca
      661 gagcaagctg acagagaagc agactatgca ctcgcagtca gaaggacctt tcacccaagc
      721 agtcagaacg tctagtatcg agatgctccg aatacgagac ggcaccccac tagaaacagt
      781 tcaccttgag actcaacagg gagtattttc gtccactgca cttcatacaa actcagggaa
      841 tattccaatc gagtttcagc cacatggagt tccagcagtt gatgctttcg gggccggcca
      901 cccatcaaca ccaggatccc atgctcactt ctgttgatac agtagacctc accctgctca
      961 atggtcactc gctgtccatc gagcgattcg cataagctat aggcgcacac cttttgttcg
     1021 ctcacccgct cctctt
//
LOCUS       DATCGC010001045         1543 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_248661, whole genome shotgun sequence.
ACCESSION   DATCGC010001045 DATCGC010000000
VERSION     DATCGC010001045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1543
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_248661"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..216
                     /locus_tag="VIJ87_10195"
     CDS             <1..216
                     /locus_tag="VIJ87_10195"
                     /inference="COORDINATES: protein motif:HMM:NF012759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantetheine-binding protein"
                     /protein_id="HEY5444819.1"
                     /translation="FLNNNAASIGVSTLDPTLDLFASGTLDSFALVDFVTVIEEHCGI
                     RVPDAEVIPANFRTIEAIDLYVSDRKN"
     gene            219..1193
                     /locus_tag="VIJ87_10200"
     CDS             219..1193
                     /locus_tag="VIJ87_10200"
                     /inference="COORDINATES: protein motif:HMM:NF020130.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HEY5444820.1"
                     /translation="MKAFITASGTHLPEQVVTNEHLVDKLGLSPEQIFKSSGIRERRW
                     ARRGQTTSSLAGNALVNANTSLDDIDYLLFGTMTPDRFIPGSATAVQAALGLKEIPCL
                     DIRAACCNTLYGLQLSRALVATQTASKVALCLAEVQSAFLNISPAAATTSMLFGDGAA
                     ALIVSSKGEEGALEIVDVHLASDGKYVDDLGIRCPGSEFGNDGELQDFEPRMVGQSVI
                     LQASRKMVSTCQTVLERNSLSIEAVRWIVPHQANANLLAQVGRGLGLRDANKIVSVIE
                     HTGNTSSASMGIALDKLLRSGDLSSGDYVLLPAFAAGFTWGAGLCRVV"
BASE COUNT          356 a          376 c          428 g          383 t
ORIGIN      
        1 ttcctcaaca acaacgcggc gagcattggt gtttcgacac tggatccaac tctcgacctg
       61 tttgccagcg gcacgctcga cagcttcgcc ttggtcgact ttgtgaccgt gattgaagag
      121 cactgtggaa tacgagtccc cgatgctgag gtgattccag ctaactttcg gaccatcgag
      181 gcgatcgatc tctatgttag tgaccgaaag aattgatcat gaaagctttc atcacagcat
      241 ccggtacgca cttgccggag caggttgtta ccaacgaaca cttggttgac aagctcggac
      301 tatcgccaga acagatcttc aaatcttccg gaattcggga acgtcgctgg gctcgtcggg
      361 gtcaaactac tagttcgctg gcgggcaatg cgcttgttaa tgcgaacact tcgctcgacg
      421 acatcgacta tctgttgttt ggcacgatga cccctgatcg gtttattcca ggttcggcca
      481 cagctgttca ggcagccctt ggcttgaagg agattccttg tctggatatt cgcgcggcat
      541 gttgtaacac gctctatgga cttcaactct cgagggcact cgtggctaca cagactgcaa
      601 gcaaagttgc tctttgtttg gccgaagttc aatcggcatt tctaaacatc tcgcccgccg
      661 cggcaaccac ctcgatgctg tttggcgatg gcgccgcggc gttaatagtt tcgagcaaag
      721 gggaagaggg ggcgctggag atcgtcgacg tacatctcgc aagtgatgga aagtatgtcg
      781 acgatctcgg cattcgttgt ccggggtccg agtttggaaa cgatggtgag ttgcaagact
      841 tcgagccgcg aatggtgggt cagtcagtga ttctgcaggc atcgcgaaaa atggtatcga
      901 cgtgtcaaac ggtgcttgag agaaactccc tatcgataga agcggtgcgc tggatagttc
      961 cacatcaggc aaacgcaaac ttgctggcgc aagtcgggcg tggacttgga ttgagagacg
     1021 cgaacaagat cgtttcagtt atcgagcaca ctggaaacac gtcgtcagct tcaatgggaa
     1081 ttgcgttaga taagctgctc cgttcggggg atttgagttc gggagattat gtgttactgc
     1141 ccgcgtttgc agcgggattc acatgggggg cgggtttgtg tcgcgttgtt taatgtccga
     1201 tatgcttaaa gaggctcttg caaaagtctc attctcccca ggcttcagcc tggggttaca
     1261 gtagggccca attttgagga accgttttaa cggtttacga gtttcgagcc aaccaagctc
     1321 cctgccaaag tttcattggc gtcggattca ttcgcacact gagcaaaacc gttgaaacag
     1381 ttacttagta atgggcgggc accataaccc caagctgaag cttggggaga atgagaggga
     1441 gcccgcactc tggcttcgaa cgtgacgatt tcaaactttt gcaagagact ctaaagcaga
     1501 tcggacattc ggcagatcat cctcttgacc acttatcgct cag
//
LOCUS       DATCGC010001046         1227 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_281900, whole genome shotgun sequence.
ACCESSION   DATCGC010001046 DATCGC010000000
VERSION     DATCGC010001046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1227)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1227)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1227
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281900"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(212..484)
                     /locus_tag="VIJ87_10205"
     CDS             complement(212..484)
                     /locus_tag="VIJ87_10205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444821.1"
                     /translation="MARCIVSYLDTEGLRHTVEVEAESLYEAGVLALKAFKQHSCEPG
                     VLSMLEVEIQTSIKHEVTPKKIHSWLNGGARTPKEAAEKKRLRELL"
     gene            626..>1227
                     /locus_tag="VIJ87_10210"
     CDS             626..>1227
                     /locus_tag="VIJ87_10210"
                     /inference="COORDINATES: protein motif:HMM:NF024909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY5444822.1"
                     /translation="MRKRIVIVLFSSTITLLAGVIVTPAQQTTPARTPKPEVKQGSKT
                     APTQEPVARDQESIRISTEEVQLSVAAFDNFGRLVPSLQRDELLVLEDGVPQEIRSVR
                     RVPANVILLLDTGGELNSAKRVTVTREVAKTVVNSLAAGDQISILQFNSKVELLADWT
                     SDYQSVLSILQSKLLPAKRALFFDALAEATALFTLSSKLNR"
BASE COUNT          289 a          344 c          294 g          300 t
ORIGIN      
        1 ccagttgaga gagggggcaa aatcaactgc gtggatccac tttggtccga agtcggattt
       61 gggatcctca ccccggcggc cttcgccagc tttgcgtctc aggatagttc gcccagaagt
      121 gctagctctg aggcgcaaag cacggcggag agactcagaa aacatcaagc tcgaagctat
      181 accgttctca tttcaatgcc ctcgcacctg atcacagtaa ttcgcgcagt cgcttctttt
      241 cggcggcttc cttcggcgtt cttgcgccac cgtttagcca tgaatgaatc tttttgggag
      301 tcacctcgtg ctttatcgaa gtttgtatct ccacctcgag catgctcaga acacccggct
      361 cacaactgtg ctgcttgaag gccttcagcg ctaatacccc ggcctcataa agactctctg
      421 cttcaacttc cactgtatgt cgtaggcctt ccgtgtcgag gtaggagact atgcagcgcg
      481 ccatgctgcg gagtttagca atgggatttt cgctttggtg atcctttggt gaacaaaaga
      541 cacctgccaa ccacttcccg agaccatgtg tctatagacc taaggatcgc cagtgataaa
      601 acgcaactca tctgaccgga ttttcgtgag aaaacgaatc gtcattgtcc tgttctcttc
      661 cactattaca ctgctcgcag gcgtaatcgt tacgcccgcc cagcaaacca ctcctgcgcg
      721 aaccccgaag cccgaagtca agcaaggctc aaagaccgct ccaacgcagg aaccggtcgc
      781 aagggaccaa gagtcaatcc gcatttcaac cgaagaagtg caactctccg tcgccgcttt
      841 tgacaacttc ggcagactcg ttccttctct gcaacgcgat gagctacttg tattggaaga
      901 tggtgttcct caagaaatcc gtagtgtccg ccgtgttcct gccaatgtca ttctcttgct
      961 ggacaccggc ggtgaactta attctgcgaa acgtgtgact gtcacgcgtg aagtagcaaa
     1021 gactgtggtc aacagtcttg cagcgggcga ccaaatatcg atcctgcaat tcaatagtaa
     1081 agttgaactg ctagcggatt ggacgtcaga ttatcaatcg gtgctttcaa tacttcagtc
     1141 gaaactcctg ccggcaaaac gtgcgctctt cttcgatgcg ctagcggaag caacggcgct
     1201 cttcacgttg agcagtaaat tgaatcg
//
LOCUS       DATCGC010001047         1061 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_281910, whole genome shotgun sequence.
ACCESSION   DATCGC010001047 DATCGC010000000
VERSION     DATCGC010001047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1061)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1061)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1061
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281910"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1061)
                     /locus_tag="VIJ87_10215"
     CDS             complement(<1..>1061)
                     /locus_tag="VIJ87_10215"
                     /inference="COORDINATES: protein motif:HMM:NF015019.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_function: GO:0009678 - diphosphate hydrolysis-driven
                     proton transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sodium/proton-translocating pyrophosphatase"
                     /protein_id="HEY5444823.1"
                     /translation="GKFILILEAFIAVVIVLYFGVLSGLPAGRVVIILAFSLVGIAGS
                     YCVAWFGIRVNTFANSRTAFASLEGKPFPLYAIPLKAGMSIGMMLISTELLIMLCILL
                     FVPGEYAGPCFIGFAIGESLGAAALRIAGGIFTKIADIGSDLMKIVFKIKEDDARNPG
                     VIADCTGDNAGDSVGPSADGFETYGVTGVALITFILLGVREPHVQVQLLVWIFVMRVM
                     MIIASAASYFVNDFIAKSRYKNADKMNFEAPLTSLVWITSIVSVVITFIVSKLTIPTL
                     GNNTSLWWKLSVIISCGTLAGAIIPELVKVFTSTESRHVQEVVTSSREGGPSLNILSG
                     LVAGNFSAYWLGISIVALM"
BASE COUNT          303 a          273 c          269 g          216 t
ORIGIN      
        1 ccatcaacgc cacgatgctg atgcccagcc aataagcgga gaaattgccc gccacaagtc
       61 ctgacagaat gttcaaagaa ggtccccctt ctctggacga cgtcacaact tcctgcacgt
      121 gacgggattc ggttgacgta aacactttta cgagttccgg aatgatcgcg cctgccaatg
      181 tgccacagga gatgatcacg ctgagtttcc accaaagcga agtgttgttg ccgagggttg
      241 gaatcgtcag tttcgaaaca atgaaagtga ttacgacgga aacaattgaa gtgatccaga
      301 cgagcgacgt aagtggcgct tcgaaattca tcttgtccgc gtttttgtag cgcgacttgg
      361 caatgaaatc attaacgaag tacgacgcgg cactcgcgat gatcatcatt acgcgcatga
      421 caaagatcca gacgagcaat tgaacttgaa catgcggctc tctcacgccc agcaggatga
      481 atgtgatcaa agcgacgccg gttacgccgt aggtttcaaa accatcagcg ctcggtccaa
      541 ccgagtcacc tgcgttgtcg ccagtacagt cagcaatcac accggggttg cgagcatcat
      601 cttctttgat cttgaagacg atcttcatca agtcagatcc gatgtcagca atcttggtga
      661 agatgccacc agcaatgcgc agcgcggcag cgccaagtga ttcaccgatt gcaaaaccga
      721 taaagcaagg gcctgcatat tcgccaggta cgaacaaaag gatacagagc atgatcagca
      781 actcggtact gatcagcatc atgccgatgc tcatgccggc ttttagcgga attgcgtaaa
      841 gtggaaatgg tttgccttcg agactggcga aagctgttcg cgagttagca aatgtgttga
      901 cgcggatgcc gaaccaggcg acgcagtagc tgccggcaat gccgactaaa ctaaaggcca
      961 ggatgattac cacacgaccc gctggcagac cggaaagcac accgaagtaa agaacaataa
     1021 ctacagcgat gaaagcctcg agaatcagaa tgaacttacc c
//
LOCUS       DATCGC010001048         1550 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_317342, whole genome shotgun sequence.
ACCESSION   DATCGC010001048 DATCGC010000000
VERSION     DATCGC010001048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1550
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_317342"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1411)
                     /locus_tag="VIJ87_10220"
     CDS             complement(<1..1411)
                     /locus_tag="VIJ87_10220"
                     /inference="COORDINATES: protein motif:HMM:NF015901.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptA/OstA family protein"
                     /protein_id="HEY5444824.1"
                     /translation="MDFYLDKDQKLESAVAWQDVKGRTLNADSDVEWSGANSIEVKFQ
                     AQNNQSVLKQLDATGRSVITMSAPKSKANDPRAANKRLTADQVKLFWRSSGQDLEKAE
                     ANGNAELFVDPLDRSSASDRKTVTAPYFNCEFFPSGNLTKVCNATSGAKAVIDPVQPN
                     PKRGTRTLTSQTMTAVFIPDTQDIERFDAQGDAKFNENDRNGIAATVSYTAKDQTVRL
                     RGSEPTVWDSRGRTKAVELDSDLANKVSYSRGRTASTYYSQEQTNGATPFSKVKSPVY
                     IVSDRAEFHHETGLATYTGNARAWQDDNFVRSDKLNLYMNDKTMDASGHVQTGIYNSK
                     RKIDGNSVVVPVFASADSLKYSDPNRTIHYEGNVDIKQGTDRLTSGIADVYLMKESNE
                     MDKTIAERDVVLTQPNRKGIGDWVQYTAADEVAVLKGNPARVEDAEKGNTEGNRLTLS
                     IRDNKVTADDPRGPLSPGRI"
BASE COUNT          337 a          414 c          370 g          429 t
ORIGIN      
        1 gaattcgtcc aggtgataat ggtccacgcg gatcgtccgc cgtgacttta ttgtcccgaa
       61 ttgacagcgt caaacgattg ccttctgtgt ttcccttttc cgcatcttca acccgcgcgg
      121 gattgccttt taatacagcg acttcatctg cggcagtata ttggacccaa tccccaatac
      181 ctttccggtt tggttgagtc agaacaacat cacgttcagc aattgtcttg tccatctcgt
      241 tggattcctt catgagatag acatcggcaa tgccgctggt gaggcggtcc gttccctgct
      301 tgatatcgac gtttccttcg taatgaatgg ttcggtttgg atccgagtac ttcaacgaat
      361 cggctgaagc aaacacggga acaaccactg agttgccgtc aattttacgc ttcgaattgt
      421 agatgccggt ctgaacgtgc ccacttgcat ccatcgtttt gtcgttcatg taaagattca
      481 atttgtcgct gcgcacaaaa ttatcatcct gccaggcgcg agcattaccg gtataggtgg
      541 caagacccgt ttcatgatga aactctgcac gatcgctaac gatgtaaaca ggacttttta
      601 ctttcgagaa cggcgtagcg ccatttgttt gttcctggct gtaataggtc gacgcagttc
      661 gtccacgact gtacgacacc ttattcgcga gatcagaatc cagctcaacg gctttggtcc
      721 gcccacgtga gtcccacacg gttggctcac taccacgaag cctgacggtt tgatccttgg
      781 cagtatatga aactgtcgca gcgattccgt ttcgatcgtt ctcattaaac ttcgcgtcgc
      841 cttgtgcatc gaagcgttcg atgtcctggg tatcaggaat gaacaccgca gtcatcgttt
      901 gggaagtcaa cgtacgcgtt cctcgttttg ggttcggctg gaccggatca atcactgctt
      961 tagcgccgga agtagcatta catacttttg tcagattccc ggacggaaag aactcgcagt
     1021 tgaagtatgg agcggtaact gtctttctat cactcgcact actgcggtcc aacgggtcca
     1081 caaatagttc tgcgttgccg ttagcttccg ccttttccag atcctggccc gagcttcgcc
     1141 aaaagagttt cacttgatcg gcagtcaaac gcttattggc cgcacgtgga tcgttggcct
     1201 tagacttggg cgcagacatc gtaatcactg agcgacccgt agcatccaac tgcttcagca
     1261 cgctctgatt gttctgtgct tgaaacttaa cttcaatgga gttggcgcct gaccactcga
     1321 cgtccgagtc ggcattcaga gttcttccct tcacatcctg ccaggcaacg gcggattcga
     1381 gcttctgatc cttgtcgagg taaaagtcca tattgaacga gtgaacctca gcagagtgac
     1441 caggttccat tgtacggaga taggcattgc cacgaagctc acacttttgc agttgcttct
     1501 ctttgctgag cagggcgtta agcgtatcgc cactcatcac actcgtttcc
//
LOCUS       DATCGC010001049         1375 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_381585, whole genome shotgun sequence.
ACCESSION   DATCGC010001049 DATCGC010000000
VERSION     DATCGC010001049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1375)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1375)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1375
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_381585"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(761..>1375)
                     /locus_tag="VIJ87_10225"
     CDS             complement(761..>1375)
                     /locus_tag="VIJ87_10225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444825.1"
                     /translation="GLEIYGKNGSFRAPNCRTCPHTDKCRFFYDMKKNDMRMQLYASC
                     EDADHYYRDGCVFSEDCDIYDTMAAVVKYSNGTQMSYSLNAFMPFEGYRIAFNGEFGR
                     FEIRDYERQPWDSEWTTEMYLTKSFGQREKIDAGEVGAGHGGGDARLRDLIFRKTDLP
                     PYMRLPDSRAGALACMTGIAAGKSIELKRPIKIGELIKLPTRTA"
BASE COUNT          351 a          344 c          284 g          396 t
ORIGIN      
        1 cttcgctgac atgggaatca gcaaggtcat aaaaacaaaa acgatcgcac acgaaacatg
       61 tacgaacgaa cggaatctcg atctcatttc aatctcctct ttagtgaaaa gctccaagcg
      121 cctaactgtt ctcagctttt gaagcgcgcg cgctgtaaat tccagcattc ttgggctgag
      181 ctacagtcct atcttgaacc taattccgac tacctaaatt tcgttaagtg ctggtgggaa
      241 ttcccgcctg ccgtgatggg ttttgaacct gcttggtctg accaatcaat tagatcaggc
      301 ctttgaaact agcgaaccga atatgccgaa ggagcagtta acgcgaacct atgaaattga
      361 ttttgaagcc ctaaatacgg gtgttgagca ctaccgcgct tgatgtgcgc attttgtgtc
      421 agtgaactct tgatgtcaag ctctttttct taccaattgg tcaacccttt ggtaaggggt
      481 attaccaact tcgccgccac gtttttaatt gagcaaacat tgttccgact ttaacaatcg
      541 ttcaaactct tttagtttgt gacgatcgtg aacaattacc actcgttctt gtccgaaata
      601 ctgaatatgg gctgagtttt tggaacgggg cagtatttga ttggtaagtc caatatgcca
      661 atccacggac cactatttag tcccgatggc gaacttagca actcgaatcg atcgctattt
      721 gatcgtcgcc gaaacttttc tcgaatctac ttttggagat ttacgcagtt cgcgttggca
      781 gctttatcaa ctcgccaatc ttgattggtc gctttagctc gatgcttttc cctgctgcga
      841 ttcccgtcat gcaagcgagt gcaccagctc gcgaatcggg aagtcgcatg taaggcggca
      901 aatcagtttt tctaaaaatt aaatctcgaa ggcgcgcgtc acctcctcca tgacctgcac
      961 caacttcccc ggcatcaatc ttttctctct gaccaaaact cttagtcagg tacatctctg
     1021 tggtccattc tgaatcccat ggctgccgtt cgtaatcgcg aatctcaaag cgcccaaact
     1081 caccattaaa tgcgattcga tatccttcaa acggcatgaa ggcatttagc gaataactca
     1141 tttgagtacc gtttgaatat tttactactg cggccatcgt gtcatagatg tcgcagtctt
     1201 cgctgaagac acaaccatcc cgatagtaat gatcagcatc ttcacaactc gcgtagagtt
     1261 gcattcgcat atcgttcttt ttcatgtcgt aaaagaagcg acacttgtca gtgtgtggac
     1321 acgtccgaca attgggcgcg cgaaacgatc cgttctttcc atagatttcc aaacc
//
LOCUS       DATCGC010001050         1185 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_448629, whole genome shotgun sequence.
ACCESSION   DATCGC010001050 DATCGC010000000
VERSION     DATCGC010001050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1185)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1185)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1185
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_448629"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..476)
                     /locus_tag="VIJ87_10230"
     CDS             complement(<1..476)
                     /locus_tag="VIJ87_10230"
                     /inference="COORDINATES: protein motif:HMM:NF020846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protease pro-enzyme activation domain-containing
                     protein"
                     /protein_id="HEY5444826.1"
                     /translation="MKKFLALFFSIALSAALNAHAAPVANNTPGFIKKAADLGPVDPN
                     TVITATAWLKLHNEAQLDTLVQGLHKKGSPNYHKWITQDQFNASFGPTSQEVNSVQNF
                     LRSHGLTVLAVAENNMYVKVEGTVAAIQKAFNVQIDSYKFKGNTYRSNKADPSVDNS"
     gene            937..>1185
                     /locus_tag="VIJ87_10235"
     CDS             937..>1185
                     /locus_tag="VIJ87_10235"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY5444827.1"
                     /translation="MFKIEALDHVALAVHDVEHSAQWYADVLGFKREHEGLWDGVPIF
                     VGNGAAAIALFPVRDKAGSTSHDCAAVRTLHFAFRTDRE"
BASE COUNT          290 a          272 c          303 g          320 t
ORIGIN      
        1 gagttgtcaa cagatggatc ggctttgtta gaccgatagg tattcccctt aaacttgtaa
       61 ctgtcgatct ggacgttaaa cgctttctgg atggcggcca cagtgccctc caccttcacg
      121 tacatattat tttctgcgac cgccaacacg gtaagcccgt gggatctcag aaagttctgc
      181 actgaattaa cttcctgtga cgtcggtcca aaggaggcgt tgaactggtc ttgtgtgatc
      241 cacttgtgat agtttggcga gcccttcttg tgcaggcctt gcaccagcgt gtccagttgt
      301 gcctcgttat gaagcttgag ccatgcggtg gcagtaatga ccgtgttcgg atcaacgggc
      361 ccgaggtcag cggccttctt gatgaagccg ggggtgttat tggcgacggg ggctgcatgc
      421 gcattaagtg ccgcggacaa cgcgatggag aagaataggg caaggaactt tttcataagt
      481 gtgaaagtta tagtgtaaga agttatggaa tgttaatttg atttccacga aatctccaga
      541 atcttttgag tcagacaact tttttattga tctggcgtgt aggaacttac cttacaaacc
      601 agaagcaaca aagtcggcaa tttctaatcc gattgtctaa ttagcggtac ctactggtta
      661 taaaatctaa gccaagtgag tatggccggc gaaataccct ggtccaccta cagaacaaaa
      721 taataaggcc gagccccaaa ctcgatatta ccatgacagc atttgttata ggtaccattg
      781 ctgcgagtac tcctagaaat attccaattc ttagtttttt aacgataggc atcgaaacgc
      841 ggaaacggtc aacttctcag cgtacagggg cgcttcgcta gaagtacggt tgactttgtg
      901 agatgcgcag tgccgttcta agatatcgtt atctccatgt ttaagatcga ggcccttgat
      961 catgtcgcgt tggccgtcca cgacgttgaa cattccgccc aatggtatgc tgatgttctc
     1021 gggtttaaac gagaacatga aggactgtgg gatggagttc cgatctttgt cgggaacggc
     1081 gctgccgcca ttgcgttatt tcccgtgcgc gacaaagcag gatcgacgtc ccacgattgt
     1141 gccgcagtgc gaacactcca ttttgctttt cgcaccgatc gcgaa
//
LOCUS       DATCGC010001051         1171 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_49494, whole genome shotgun sequence.
ACCESSION   DATCGC010001051 DATCGC010000000
VERSION     DATCGC010001051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1171)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1171)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1171
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49494"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..265)
                     /locus_tag="VIJ87_10240"
     CDS             complement(<1..265)
                     /locus_tag="VIJ87_10240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444828.1"
                     /translation="MARKSQTILLIGFLLFLLGVVSLVPVLRNAVASPPPPMPPSGGS
                     ALQYSTSGKAVMTVNGPGCCDGITFPATFNMDYATDGSGAIHIN"
     gene            425..>1171
                     /locus_tag="VIJ87_10245"
     CDS             425..>1171
                     /locus_tag="VIJ87_10245"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEY5444829.1"
                     /translation="MSASLIEFGKFRLDFTEHLLYGEDGEVVPLKPKVVETLELLVQE
                     SGRLISKDELMTRLWPDTVVEESNLTQNVYLLRKVLGSDPNGRRYIENVPKRGYRFTA
                     DVDETVGTESRSRISTRTAHSSGNSIAVLPLANESQDPHAEYLSDGITESIINHLAQL
                     PQLKVIARSTVFRYKGRDVAPEKVGRELGVNVVLTGRVLLLGDKLIVRTELVDAVEGW
                     QLWGEQYNRFSSDILELQEVIAQDISGKLQV"
BASE COUNT          290 a          285 c          318 g          278 t
ORIGIN      
        1 ggttgatgtg aattgctccg ctaccgtcag tcgcgtaatc catgttgaaa gttgccggga
       61 aggtgatgcc gtcacagcag ccgggcccgt ttaccgtcat cacagctttt ccactggtac
      121 tgtattgcag agcagaaccg ccgctcggtg gcatcggcgg aggaggcgag gccaccgcgt
      181 tacgcagcac gggcaccagt gaaaccactc ccagcaggaa caataggaag ccaatcagca
      241 gtatcgtttg actctttcgc gccatgtttc ttctccctta gactctcgag cagatccgtc
      301 tggcaattct cgcgtccggt gacacggttt ctgttaatat cgccttcccc cacagtgctt
      361 caaaaacgca cttggagtct taaacgtaca ctcaaaaatt tcttagcaac ttctcaacgc
      421 cgttatgagc gcgagcctta ttgagttcgg aaagttccga ctcgacttca ccgaacactt
      481 gctttacgga gaggacggtg aggttgtgcc cttaaagccc aaggttgttg agactttgga
      541 actgctcgtt caggaaagcg gaaggctaat ctctaaggac gagttgatga ctcgactgtg
      601 gccggacact gttgttgaag agtcaaacct gactcagaac gtttacctgt tgcgcaaagt
      661 cctgggtagt gaccccaacg gtcgaaggta cattgagaac gttcctaagc gaggttacag
      721 gttcaccgct gacgtcgatg aaacagtggg aactgagtct cgatctcgaa tatcaacaag
      781 aacggcgcac tcctcaggta actcgattgc ggtcctgcca ctcgcgaatg aaagtcagga
      841 tccacacgct gaatatttaa gtgacggaat tactgagagc atcattaatc acctggcgca
      901 gttgccacag ttgaaagtaa tcgcgcgcag tacagtgttt cgttacaaag gccgagacgt
      961 tgcgcctgaa aaagtcggac gcgaactggg ggtgaatgtc gttcttaccg gcagggtttt
     1021 gctgttggga gataaactga tcgtaaggac agaattagtt gatgcggttg aaggctggca
     1081 gctgtggggt gaacagtaca atcgcttctc gtcagacatt cttgagttgc aggaagtgat
     1141 tgcgcaggac atctcaggga agctgcaagt a
//
LOCUS       DATCGC010001052         1039 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_213799, whole genome shotgun sequence.
ACCESSION   DATCGC010001052 DATCGC010000000
VERSION     DATCGC010001052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1039)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1039)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1039
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213799"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..843)
                     /locus_tag="VIJ87_10250"
     CDS             complement(<1..843)
                     /locus_tag="VIJ87_10250"
                     /inference="COORDINATES: protein motif:HMM:NF020976.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase D family protein"
                     /protein_id="HEY5444830.1"
                     /translation="MFKDLYDPNTPYMGDFVNLILRRMPIMHQWDDHDSGLNNDDKTY
                     PDWNLSQQVFQEYVPSYPLPSVTPAGIWQKFSYAQADCFVLDCRSQRDVATDPDDANK
                     SMLDGNNMGATGELQWLENGLLTSTARWKIIFTSVVTNPSTKQNDAWGAYQTEWNALR
                     DFINTNNIQGVVSIAGDLHLEAIDNGTQSGFPEMSVAGANSRQVAHQCATAPPGTWSE
                     GYYDDTCPGFGLVTILEDPDRVILQAADEYGTIHISYTVSAPSITTQPTDKRVRVGTR
                     ATFSV"
BASE COUNT          221 a          271 c          289 g          258 t
ORIGIN      
        1 cacactaaat gtggctcttg ttcctactcg caccctctta tcggtaggct gagtcgtgat
       61 ggatggagct gagacagtat aagaaatgtg gatggtgccg tactcgtccg ctgcttggag
      121 gattactcga tccggatcct ccaagattgt gaccaatccg aagccagggc acgtatcgtc
      181 gtaatatcct tcgctccagg ttccgggggg agcagtagcg cactggtgag caacctgtct
      241 cgaattcgcc cccgcgacgg acatctcagg aaagccagac tgcgtgccat tgtcgatcgc
      301 ctcaagatga aggtctccgg caatggacac gacgccctgg atattgttgg tgttgatgaa
      361 atccctcagc gcgttccact ccgtttgata ggctccccac gcgtcgttct gtttcgtgct
      421 cgggttggtt acgacggaag tgaagatgat tttccaccgt gccgttgatg tcaggagacc
      481 gttttctagc cactgcagtt ctccggtggc gcccatgttg ttcccatcga gcatactctt
      541 gttggcgtcg tctggatccg ttgcgacatc tcgctggctg cggcaatcga ggacaaaaca
      601 gtcggcctgg gcataactga atttctgcca gatacccgcc ggcgtgaccg aagggagcgg
      661 atagctcggc acgtattcct gaaatacctg ctggctgagg ttccaatcgg ggtaagtctt
      721 gtcgtcgtta ttcaagccag aatcgtgatc gtcccactga tgcataatag gcattctccg
      781 caggatcaga ttaacgaagt cccccatgta gggcgtattc ggatcataaa ggtccttgaa
      841 catctgcctc ttattcgaga gggttttggg attccggtgg tcaaagtcgc cgccaatgaa
      901 tgcgaagaca gggttctctg ctgccgcgct ggcgaaggtc tgcgatggct ccctcagctt
      961 ccggatcgtc acgaagtctg tcaaaactat aaagctaaaa tttcttgcac tcccgctggg
     1021 aggaaaagtg gtgaaggaa
//
LOCUS       DATCGC010001053         2525 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_114515, whole genome shotgun sequence.
ACCESSION   DATCGC010001053 DATCGC010000000
VERSION     DATCGC010001053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2525
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114515"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1441)
                     /locus_tag="VIJ87_10255"
     CDS             complement(<1..1441)
                     /locus_tag="VIJ87_10255"
                     /inference="COORDINATES: protein motif:HMM:NF016292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate binding protein"
                     /protein_id="HEY5444831.1"
                     /translation="MYADKSTGAMMAYRETFQSVLNQGSKDHITFFEEYMDLWQNSSE
                     EYLTLLRGYYAQKYRDQRFDLIVTQAPSVLNFISNYGEELFPGTPTVFGTMERRRIEE
                     INLRPNMTGVLDDFAFVETVELALRLQPGIRKVFVVSGSSEIDKRYLVIARREFDQLK
                     DRVEVVYLVDLTMEELEQRLSQLPDHSVTFFITLYRDSKGESIIQLDAAARVSKASTV
                     PTYGLADRFIEAGVFGGYVFSLEADASAAAKVALRVLAGEKPQDIPIQVAESNRYMFD
                     WRQLKRWGIAEDRLPQGSILRFKQLTFWELHKWKVVAAISLFVLQALLIVGLLINRAK
                     RLRAERETRRFAAEVKTEHERLEEVVRNVPGIVWESRLDQSQDSLCSTFVSPYVENML
                     GYTADEWLSVPNLPITITHKDDRESFAREMAAILKSGNEGVLRFRWQARNGKLLWVEA
                     HVAAIRDELGAIIGLRGVTMDVTERKRDEE"
     gene            2291..>2525
                     /locus_tag="VIJ87_10260"
     CDS             2291..>2525
                     /locus_tag="VIJ87_10260"
                     /inference="COORDINATES: protein motif:HMM:NF013080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HEY5444832.1"
                     /translation="MATKKPNILILWGDDIGIWNIGAYHRGMMAGRTPNLDKLAKGGM
                     LFTDYYAEASCTAGRANFIMGELPIRTGMTTVGQ"
BASE COUNT          660 a          639 c          584 g          642 t
ORIGIN      
        1 cctcctcatc acgtttgcgt tccgtgacgt ccatcgtcac gccacgtaaa ccaatgatag
       61 ctccaagttc atcccgaatc gctgcaacat gggcttccac ccaaagcaac tttccatttc
      121 tggcttgcca acgaaagcga agcacgcctt catttccact tttaagaatc gctgccattt
      181 cgcgagcgaa ggattcgcga tcatctttgt gagttatcgt tatcggaagg ttaggtactg
      241 acaaccactc gtcagccgta taacccaaca tgttctcgac atacggactg acgaaagtag
      301 aacagagcga gtcttgagac tggtctaaac gagactccca gacaataccg ggcacgtttc
      361 taacaacctc ctcaagtcgt tcatgttcgg tttttacttc agcagcgaat ctcctggtct
      421 ccctttctgc tcgtagacgc ttcgcacggt ttattagcaa accaacgatg agtagcgcct
      481 ggagaacgaa cagtgaaatc gccgcgacaa ctttccattt gtgcaattcc caaaaggtga
      541 gttgtttgaa ccgcagaata cttccctggg gcaatcgatc ctcagcgatt ccccatcgct
      601 tgagttgtcg ccaatcgaac atgtaacgat tggattctgc gacttgaata ggaatgtctt
      661 gcggcttctc tccagccaaa acgcgaagcg cgacctttgc tgcggcactc gcatcagctt
      721 ccaggctaaa aacataacca ccaaaaacac ctgcctcgat aaagcgatca gccaaaccat
      781 aggtcggaac cgtcgatgct tttgaaactc gcgcggccgc atccagctgg atgatcgact
      841 ccccttttga gtctcgatac agtgtgataa agaaagttac tgagtgatct ggcaattgag
      901 atagacgttg ctccaactcc tccatcgtca ggtcaaccag gtagaccact tcgacacgat
      961 cttttagctg atcgaattcc cgccgagcaa taaccagata tctcttatca atttctgagg
     1021 agccggaaac aacaaagact ttacgtatgc caggttgtag tcgaagagcg agttcaactg
     1081 tttccacaaa agcgaaatcg tcgagaaccc ctgtcatgtt tggtcgcaga ttgatttctt
     1141 ctattcgacg tctttccatc gttccgaaaa cagtcggcgt tcccggaaat aattcttcgc
     1201 cgtagtttga aatgaaattc aggacggatg gtgcctgggt aactatcaga tcgaaccttt
     1261 gatcgcgata cttttgagcg tagtaccctc gtaacagcgt caggtattcc tcactggaat
     1321 tctgccagag gtccatatac tcttcgaaga aagtaatgtg gtcctttgac ccttggttaa
     1381 ggactgattg gaaagtctcg cgataagcca tcatcgcgcc tgtgctcttg tcggcgtaca
     1441 agatcaggac cttcttttcc gccgcaaaga cgctaccctc taacactgtt aataaaatca
     1501 gcgcgagtat gccacctgca attctagagg aaggaatttc ggaggttatt cttgcgagag
     1561 atcgcttccg cataagatgt gaccgaggaa ccaacatttg gtgacacctg aaggcatcga
     1621 aaacaatcat ccatccgcag agtttcgcga attgaagaac cgtcagtact gatcaattca
     1681 gtagttttga ctcttaagcg aggttggaaa ctttagtgtc gatctaatac taaacagatt
     1741 gctcacaact actgtcagaa ttgacaggtt cgtgcggcca gagagcacga gtcataacta
     1801 cttacgatga acgtccgcga gccggctggg gaacagctat agaatagctg tcaaacggga
     1861 gcgagaatat cgggtgaatc atgtatttaa cacgaccttt ccgtgtggaa gtgaaattca
     1921 agagatgccc gcacttcgga gagggttcct gtcgctcgta cgcttcgtcc tcaaggttcc
     1981 ctatgtcaac ttttacttac atttactgtc aaaactagca gtcatagttg gatttcgcgc
     2041 ctgagtcggg aagcgaatgt gaagttttcg gtcggtctcg atgactgcct cctttctgct
     2101 tgcgatttca ggagtggtgg tattcgtgtt gatattaatc cggatgtaac ttccaaacct
     2161 ttcttgacat gtattgacag tattcagcgg cccgcactca gattaaattc cttgaacatt
     2221 cggatcgtga ctacctaacg cgaggaatca ttctcgtaga actacatttg aaaggaaggt
     2281 aaggcgcaat atggcaacaa agaaaccgaa catactcatc ttgtggggtg atgacattgg
     2341 catctggaac atcggcgctt accaccgcgg tatgatggca ggcaggacac cgaacctcga
     2401 taagcttgcc aaaggcggca tgctcttcac cgactactac gctgaggcga gttgcacggc
     2461 gggtcgcgca aacttcatca tgggcgaact tccgattcgc actggcatga cgacggtcgg
     2521 ccagg
//
LOCUS       DATCGC010001054         1220 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_83926, whole genome shotgun sequence.
ACCESSION   DATCGC010001054 DATCGC010000000
VERSION     DATCGC010001054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1220)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1220)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1220
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83926"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1220)
                     /locus_tag="VIJ87_10265"
     CDS             complement(<1..>1220)
                     /locus_tag="VIJ87_10265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444833.1"
                     /translation="TQYGDAFQRANFWDSVSVKAKDYHVLLGQPTVLPTQTIVVPDGL
                     GTYDVDFSTGLQLPSVDRAFLADQSASILSAANVTPSQLPIVVWGKVDYGRASGYHAT
                     LTLNGNQRQTYIGTSYHSQATRAGSLPDTYPLSHEVIEWLDDPFISNYTPGWDIPYIS
                     NKAQCDSRYVNDLLETGDPVEVLTEAVVSLNGGAFTYHVTEGMFIDFYTRARRSRSVN
                     GQYSMFNIGAQYGVPSAPSIPCTGHVELNDFQLYAIKGSSFSQALGVNNLESLVGVYV
                     DQSGLRHGWLSTTTSFQTIDYPGALETIPSQINDAGTIVGLYFDAVGVPHGFAIQSGQ
                     FSSIDYPGALDTAAFDVNLNGDIVGVYDAPDFTSHGFLLRSGSFSAIDFPFNRTTQAT
                     GINSAGKIVGYHSV"
BASE COUNT          317 a          298 c          308 g          297 t
ORIGIN      
        1 caccgaatgg taacccacaa tctttcctgc agagttgatt ccagtagctt gtgtagtgcg
       61 gttgaatgga aagtcaattg ccgaaaagct tccgctccta agtagaaacc cgtgactggt
      121 gaaatccggt gcgtcgtaga cgccgacgat gtcgccattt agattcacat caaaagcagc
      181 agtatctaag gctcctgggt aatcgatcga tgagaattga ccgctctgga ttgcaaaacc
      241 atgtggcaca cccacagcgt cgaaatataa acctacgatc gtgccagcat cgttgatctg
      301 gctgggtatc gtttccagtg ctcccggata gtcgatcgtt tgaaaggatg ttgtggttga
      361 cagccaacca tgtcggaggc ctgactggtc tacgtaaaca cctacaagtg attccagatt
      421 gtttacacca agcgcctgac taaaactcga acctttgatg gcatatagtt gaaaatcatt
      481 taactcaaca tgaccggtgc acggtataga cggcgcagac ggcactccat actgcgcgcc
      541 gatattgaac atgctgtatt gaccattgac tgaacgggaa cgacgagccc tagtatagaa
      601 gtcgataaac atcccttcgg tgacgtgata ggtaaaagct ccgccgttga gcgaaacaac
      661 ggcttcagtt aacacctcaa cgggatcgcc cgtttcaagc agatcgttga cgtagcgact
      721 atcacattgt gctttgtttg atatgtaggg aatgtcccaa ccgggcgtat agttgctgat
      781 gaatggatcg tcaagccact ctattacttc gtgactgagc ggataggtgt caggtaagga
      841 accagctcga gttgcttgcg agtgatagct ggtaccaata tacgtctgtc gctgattgcc
      901 gttgagagtt agagtagcgt gatatccact agctctgcca tagtcgacct ttccccaaac
      961 aacaatagga agctgggaag gtgtcacgtt cgctgcgctt aggatagaag cgctctgatc
     1021 ggccaaaaat gcccggtcga cgcttggtaa ttgaagtccg gtgctgaagt cgacgtcgta
     1081 cgtccctaaa ccatccggaa ctacaatcgt ttgcgttggc aacactgtcg gttgacccaa
     1141 cagcacgtga tagtccttcg ccttgactga aacggagtcc caaaagttcg ctcgctgaaa
     1201 cgcgtcgcca tactgcgtat
//
LOCUS       DATCGC010001055         1170 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_282027, whole genome shotgun sequence.
ACCESSION   DATCGC010001055 DATCGC010000000
VERSION     DATCGC010001055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1170)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1170
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_282027"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            64..>1170
                     /locus_tag="VIJ87_10270"
     CDS             64..>1170
                     /locus_tag="VIJ87_10270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5444834.1"
                     /translation="MYLDRREAGAASRALSMCSEHMLMGGQSDKLRSDLESILEIDEN
                     ELAAIRMLVRYYSWKRDKEALQDTLIKMARVSRTAEAVEDERYALSQLTIIVPHEIEF
                     SDRLNEINKQFGFEDNPFDERILQEQFSDVEVVDFDIPASPQVEIASNGFELEGNSGV
                     IRPATDSIAAELYEQTVQEVTSADFVEEEILAPTYESDLDKEIESLSFYIENEYFDLA
                     SRTINELRERFGQHSELDEIESRLKIAISNQTNGSKRLDIAEIRNEFGIDEIDVIDDS
                     DYDTHYQMGIAYQEMGLLEEAIREYQDAIALVRPNDGTRRFFQCANLLGHCFIQNSMA
                     NLALTWYQRALETVDLNDDEKQGIWYELAHAYEAE"
BASE COUNT          335 a          255 c          299 g          281 t
ORIGIN      
        1 gttcttataa aacttgtcga gttcgaaccg gcaaattacg aaaaattcct tgaacttgta
       61 tcaatgtatc tcgatagacg agaggcaggt gcggcatctc gtgcgttgag catgtgttca
      121 gaacacatgt tgatgggcgg acaaagcgac aaactgagaa gcgatcttga atccatactc
      181 gagatcgacg aaaacgagct ggctgcgatc cgaatgctgg ttcgatatta cagttggaag
      241 cgagataaag aggctctcca ggatacgctg ataaagatgg cccgcgtttc tcgcacggct
      301 gaagccgtcg aagatgagcg ttatgcactc tcccagttga ccattattgt tcctcatgag
      361 atcgaatttt cagacaggct gaatgagatc aataagcaat ttggatttga ggataatccg
      421 tttgacgaac ggatccttca ggaacagttc agtgacgtcg aagtcgtgga tttcgacata
      481 ccagcttccc ctcaggtcga aattgcctcg aatggttttg aactggaagg aaacagcggt
      541 gtgatccgtc ctgcaacaga ttcgattgct gccgaactat atgaacagac agtgcaggaa
      601 gtcacgtcgg cggattttgt cgaggaggag atcctcgctc ctacttacga atccgatctc
      661 gacaaagaaa tcgaaagcct tagcttttat atcgaaaatg agtactttga tctagccagt
      721 cgcacgatca atgaattgcg agaacggttc ggccaacatt cagaactcga tgagatcgaa
      781 tctcggctta agatagcgat ctcgaatcaa acaaacggtt caaagcgact cgacattgcc
      841 gaaataagaa atgaattcgg cattgatgag atcgatgtga tcgatgacag cgattacgac
      901 acccattacc agatgggaat tgcgtatcag gaaatgggat tgcttgaaga ggctatccgg
      961 gaatatcagg atgctattgc gctggtgcgg ccgaatgacg gaacgcgccg ctttttccaa
     1021 tgtgccaacc tgctaggtca ttgctttatt caaaacagca tggcgaatct tgcccttacc
     1081 tggtatcaaa gagccttgga gacagttgat cttaacgacg acgagaagca gggcatttgg
     1141 tacgaactgg cccacgccta cgaagcggaa
//
LOCUS       DATCGC010001056         1260 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_19485, whole genome shotgun sequence.
ACCESSION   DATCGC010001056 DATCGC010000000
VERSION     DATCGC010001056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1260)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1260)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1260
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19485"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..464)
                     /gene="recO"
                     /locus_tag="VIJ87_10275"
     CDS             complement(<1..464)
                     /gene="recO"
                     /locus_tag="VIJ87_10275"
                     /inference="COORDINATES: protein motif:HMM:TIGR00613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HEY5444835.1"
                     /translation="MALVDTEALVLRTYNLAEADKIVVCLTKAAGLVRGVAKGCRKLR
                     NRFGASLEPFTFVKLTYYERENQELVSIRQTEILKSNFNLSSDASTVTGLAYLGDLLI
                     EFSPPHQANELLYRMASACFDAIGQSPNDLQAILRYFEVWILKIEGFMPDLKT"
     gene            complement(475..642)
                     /locus_tag="VIJ87_10280"
     CDS             complement(475..642)
                     /locus_tag="VIJ87_10280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444836.1"
                     /translation="MRHFFVMTVFAVLASAVFGAVAKDSARERLLYGLKVFAEFMVIG
                     LVLGWLLYFIP"
     gene            complement(639..1070)
                     /locus_tag="VIJ87_10285"
     CDS             complement(639..1070)
                     /locus_tag="VIJ87_10285"
                     /inference="COORDINATES: protein motif:HMM:NF042755.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6677 family protein"
                     /protein_id="HEY5444837.1"
                     /translation="MVKTEKAIQQAAPTPPMAWAVGAAAWFIPGAGHLLNRRWTRAAL
                     MGGSVWVCFFLGMQMGGHMFNLSTGQGSSPLLQVPPMIANLGSGALYIVCWLLDIGFA
                     DDLVQAARATYEYGNTFLLIAGLLNYLTMLDAFDIAAGRKP"
BASE COUNT          333 a          341 c          296 g          290 t
ORIGIN      
        1 gtttttaggt ccggcatgaa cccttctatc ttcaaaatcc acacctcgaa gtaacgcagg
       61 atcgcctgga ggtcgtttgg gctctgaccg atcgcgtcaa agcaggcgct cgccattcga
      121 tacaggagtt cgttagcttg atgaggggga gaaaactcaa tgagtaaatc ccctaggtac
      181 gccaaacccg tgaccgtcga agcatcggac gaaaggttaa agtttgactt taggatttcg
      241 gtctggcgta tcgaaaccag ctcctggttt tccctctcgt aatacgtgag ctttacgaag
      301 gtgaacggct ccagcgacgc tccgaatcga ttccttaact tgcggcatcc tttggcgacg
      361 cctcgaacaa ggccggcagc tttagtgaga caaacaacga tcttgtcagc ctcagccagg
      421 ttgtaggttc gaagtaccag cgcttcggtg tcgactaaag ccatcttcga aggctcacgg
      481 tatgaagtag aggagccaac ccaaaactaa tccaatcacc ataaactcgg cgaagacctt
      541 caatccgtat aggagtcgtt cccttgccga atcttttgca actgctccaa ataccgccga
      601 cgcaagaaca gcaaataccg tcatcacgaa gaaatgtctc atggcttcct ccctgcggcg
      661 atatcaaatg cgtcgagcat tgtcaggtaa ttaagaaggc cggcgatcag cagaaatgtg
      721 ttgccgtatt cgtaagtcgc tcgagccgct tgaactaaat catcagcaaa gccgatatcc
      781 aacaaccaac atacgatata cagggcacca gaacctaaat tggcgatcat tggcggaact
      841 tgaagcaagg gggaagaacc ctgtcccgtc gacaaattga acatgtgtcc gcccatttgc
      901 atgcccagaa aaaaacaaac ccacacggag ccgcccatca aagccgctcg cgtccagcgc
      961 ctgtttagca agtgtcccgc gccggggata aaccaagctg ccgctccgac agcccaagcc
     1021 atcgggggcg tcggggcagc ttgttgaatt gctttctcag tctttaccaa tctaatcctc
     1081 cattagtgca tcgctaatac tttacctgaa gtccacattc aaaccttaat tgttaacttg
     1141 agccgtcggc attgcgacct ctcacgattt accttaacga ctagtgtcag taaaggaggt
     1201 gcgcccgtct gatctcatgg aactcttgaa gtggttgttt ccaacttgag agtagttcat
//
LOCUS       DATCGC010001057         2150 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_148107, whole genome shotgun sequence.
ACCESSION   DATCGC010001057 DATCGC010000000
VERSION     DATCGC010001057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2150)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2150)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2150
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148107"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1603)
                     /locus_tag="VIJ87_10290"
     CDS             complement(<1..1603)
                     /locus_tag="VIJ87_10290"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HEY5444838.1"
                     /translation="MKEAREETIAHYRIMQPIGAGGMGAVYKAYDKKLDRIVALKVLP
                     PEYVSQQDRRRRFYQEARAASALNHPHILTVYEVGEDDGKPYIAMEFIEGETLRQKIK
                     ARALKIKQTLEIAIQIADGLSKAHDAGIIHRDLKPENLMISRDGYAKILDFGLAKLVA
                     QRERALAADSAQKTLLRVETESGTLMGTVNYMAPEQLLGQRVDRRCDVFSFGVVLCEM
                     VTGLAPFVHDNRIDTMHAILHRDPRLPDSTHADAPADLQRILNKALAKLPKDRYQTVS
                     ELAVELRALKRDLDLGKAVPLGALRTKLVLKRAAVESRSRSVDYEAELNTAQLKAVMT
                     TDGPLLIVAGAGTGKTRTLVYRVARLVEIGAKPESVLLLTFTRRAATSMLTRAAALAD
                     ARCQRVSGGTFHSLGHSVLRKFAEQAGVQRNFTVLDQSDTEDLIDLMKRQIKLTKGRH
                     FPRKRTIASIFSTMVNKVLPLNKVLSQEYPQFLDERRDLEALFRSFEDFKRTKQMLTY
                     DDLLVRLKEALESSEEMREQLSDQYR"
BASE COUNT          469 a          554 c          588 g          539 t
ORIGIN      
        1 agcggtactg atcggacagt tgctcacgca tctcttcact cgactcgagg gcttctttga
       61 gtcgcacgag gaggtcgtcg taagtgagca tttgcttcgt gcgtttgaaa tcttcgaagg
      121 atctgaacaa ggcttccaaa tctcgtcgct catcgagaaa ctgtggatac tcctggctta
      181 gcactttgtt tagcggcaac accttgttaa ccatcgtgct gaagatcgat gcgatggttc
      241 gtttacgagg gaaatgccgg cccttggtca gttttatctg acgcttcatg aggtcgatga
      301 gatcctcagt atcgctttgg tctaacacgg tgaagttgcg ttgcacgccc gcctgctcgg
      361 caaactttct caacaccgaa tgaccgagtg aatggaacgt cccgcccgaa acgcgctggc
      421 agcgagcgtc tgccagtgca gcggcgcgcg ttagcatgct ggtggctgca cggcgcgtga
      481 aagtaagcag caatacagac tctggctttg cgccaatctc gaccagtcgc gcgactcgat
      541 atacaagcgt gcgagtctta ccggttcctg caccggcgac aattagcagc gggccatcgg
      601 tagtcatcac tgcttttaat tgtgctgtgt tgagctctgc ctcgtagtcg acactgcgag
      661 atcgactttc aactgccgcc cgcttgagca ccagctttgt tcgaagcgct ccaagcggca
      721 cagctttacc aaggtcgaga tcgcgtttca aggcgcgcag ttcgaccgcc aactcgctga
      781 cggtttgata acgatccttg ggcaacttcg ccaaagcttt gttcagaatg cgttggagat
      841 cagcaggcgc atctgcgtga gtggagtcgg gcagcctcgg gtcgcgatgc agaattgcgt
      901 gcatcgtgtc gatacgattg tcgtgaacaa agggagcgag gccggttacc atttcgcaca
      961 agaccacgcc aaaagagaag acgtcacaac ggcgatccac tctttgtccc aacagttgtt
     1021 ccggagccat gtaattgaca gtgcccatta gcgtgccgga ttccgtctcg acccgaagaa
     1081 gagttttttg tgcactgtcc gccgcgagag cgcgttcacg ttgagcgacg agtttagcga
     1141 gaccgaaatc aagaatcttg gcgtagccat cgcggctgat catcaggttt tctggcttga
     1201 ggtcgcgatg gattattccg gcgtcgtgag ctttgctaag accgtcggca atttgaattg
     1261 cgatttcgag ggtctgtttg atctttaaag cgcgcgcttt gattttctgg cgcaacgttt
     1321 cgccttcgat aaactccatc gcgatgtacg gcttaccatc gtcttcgcca acttcgtaaa
     1381 cggtaaggat gtggggatga tttagggctg aagcagcgcg ggcttcttga tagaaacgcc
     1441 ggcgtcgatc ttgttgtgag acgtactcag gtggcagaac tttaagcgcg acgatgcgat
     1501 ccagcttctt gtcatacgct ttatagactg cgcccatacc accagcgccg atgggctgca
     1561 tgatccggta gtgcgcgatc gtctcttcgc gagcttcttt cattacaagg aaatgtcagt
     1621 ttagttcaat gagtaaggta cgaagaagtt taccggaaag attttcggtt ggtaattgct
     1681 gctggagggg ctttggtctt tggccttagg actttggtct cgctttttga actttggttt
     1741 tgaactggtt atgcggcttt gcccgctttc cgtcgcttca caagaagtct ttgaggcttc
     1801 ggctcgggcg gcgtagccgc ccaaaagatt tggggtcttg acggaaagcc ggaggctttc
     1861 cgcacgggag gcggcaaagc cgcaaagcac aaacgccagt tcgaaaaccc aagaacccaa
     1921 gtacgaagac ccaagaccca agacccaaga cccaagtccg aagacagaag accatttatc
     1981 tcttcatcgc cagcgtcaat ccatcaccta ccgtaagcat gctcagcgct acgcgctcat
     2041 cacgatgaag tttttcattt aactttcgaa tggcgacggt gtcggtgtct gactcatttg
     2101 gattagctac tcgccctgac cagattgtgt tgtcgacggc aattaagccg
//
LOCUS       DATCGC010001058         1543 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_347246, whole genome shotgun sequence.
ACCESSION   DATCGC010001058 DATCGC010000000
VERSION     DATCGC010001058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1543
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_347246"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..824)
                     /gene="argC"
                     /locus_tag="VIJ87_10295"
     CDS             complement(<1..824)
                     /gene="argC"
                     /locus_tag="VIJ87_10295"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: protein motif:HMM:TIGR01850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HEY5444839.1"
                     /translation="MNNRKLKIGIYGGSGYGGSELLRILLFHPNVEISFVTANEQAGK
                     AVSEVHRNLAGLTALKFIPAPEKTEQLSDLDCVFLALPHGQAMDVVPTLPDHVKAIDL
                     SGDFRLRDHDVFEKHYKQQHTAMQLQSDFVYGLTETNREGVRHARLIANPGCFATATL
                     LGLAPLVAQGSLTGRVIVDAKTGSSGSGAKAAANTHHPQRMNSFYAYKPFTHQHVPEI
                     EQELDRVGDWTSELVFMTHSLPVARGIFASIYAELKNETTESELNDFFTDFYRDSV"
     gene            complement(934..>1543)
                     /locus_tag="VIJ87_10300"
     CDS             complement(934..>1543)
                     /locus_tag="VIJ87_10300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444840.1"
                     /translation="GETAPLVLIAGTSMNSGKTYAATELIKQATRAGLKVAAAKLSGV
                     ACLRDTMNMADHGAVATASFLDCGLPSTVDVGDLAPTAKAIIARLNEINPDLIVIELG
                     DGILGGYSVDTIFDDAEIREATAALVFCASDYVGAWGGIELLRRRGVNIDVISGSVTD
                     SQMGEDYVKNEFGVPAANARREGSMLFDLVKEKVSEKTKQLV"
BASE COUNT          364 a          434 c          372 g          373 t
ORIGIN      
        1 aagactgaat cacgatagaa atccgtaaag aaatcattca actccgactc cgttgtctcg
       61 tttttcagct cggcataaat cgaagcaaag ataccccttg cgacaggtaa cgaatgggtc
      121 atgaagacaa gttcgctcgt ccagtcaccg acccgatcaa gttcctgctc gatttcaggc
      181 acgtgctgat gagtgaacgg cttgtacgcg tagaacgaat tcatccgctg cggatgatgt
      241 gtgttcgccg ctgcctttgc ccctgaacct gatgaacctg ttttagcgtc cacaatcact
      301 ctgccggtca aactaccttg cgcgacgagt ggcgcaaggc cgagcaatgt cgcggtcgca
      361 aaacatccgg gattggcaat caatcgagcg tgtcgtacgc cttcgcgatt tgtttccgtc
      421 aaaccgtaaa caaagtctga ctgcaattgc attgcggtgt gttgttgttt gtagtgcttt
      481 tcaaagacat catgatcgcg taaacgaaaa tcgccggaga ggtcgatcgc ttttacgtgg
      541 tctgggagag tcggaacaac gtccatcgcc tggccgtgcg gcaacgcgag gaagacacag
      601 tcgagatcgc tcagttgttc ggtcttttcc ggagccggaa tgaatttcag agcggtcagt
      661 cccgcgagat tgcgatggac ctccgagaca gctttgccgg cttgttcgtt agcagtgaca
      721 aaggagattt ctacgtttgg gtgaaacagg aggatgcgaa gcaattccga tccaccataa
      781 ccggagccgc cgtagatccc aattttgagt ttgcggttgt tcatctgttc gttctctgcg
      841 ctaactctgc gtcctctgcg tctctgcggt taatatattt ctcgcatcca gatcaccgca
      901 gagacgcaga ggacgcagag ttaacgcaga gagtcacacc aactgtttgg ttttctctga
      961 aaccttctct ttcaccaaat caaacaacat cgatccttcg cgacgcgcat ttgctgccgg
     1021 tactccaaac tcgttcttga cgtagtcctc acccatttgt gaatcagtga cggaaccgga
     1081 gatcacatcg atgttcacac cacgtctccg cagcaactcg atgcctcccc acgccccgac
     1141 ataatcagaa gcgcagaata cgagtgcagc tgttgcttcg cgaatctccg catcgtcgaa
     1201 gattgtatcc accgagtagc cacccagaat tccatcaccc aactcaatca caatcaggtc
     1261 gggattgatt tcgttcaaac gtgcgattat cgccttcgct gtcggcgcca gatcaccgac
     1321 atccaccgtt gaaggtaaac cgcaatccag gaaactggca gtcgccacgg ctccgtggtc
     1381 ggccatattc attgtgtctc gcaaacaagc aacacccgat agctttgccg cagcgacctt
     1441 caagcccgcc cttgttgctt gcttaatcaa ctcagtggca gcgtacgtct tgccgctatt
     1501 catgcttgtg ccggcaatca acacaagtgg cgcagtctcg ccc
//
LOCUS       DATCGC010001059         1726 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_83997, whole genome shotgun sequence.
ACCESSION   DATCGC010001059 DATCGC010000000
VERSION     DATCGC010001059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1726)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1726
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83997"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..254
                     /locus_tag="VIJ87_10305"
     CDS             <1..254
                     /locus_tag="VIJ87_10305"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CHAT domain-containing protein"
                     /protein_id="HEY5444841.1"
                     /translation="RGEGLVGLVRGFMYAGSPRVVASLWQVDDAATAELMKRFYRGMF
                     QEKLPPSAALRAAQIDMLKRRHWQAPYYWSAFVLQGEWR"
     gene            541..>1726
                     /locus_tag="VIJ87_10310"
     CDS             541..>1726
                     /locus_tag="VIJ87_10310"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5444842.1"
                     /translation="MRWLEVGKPIERELSGGESHSYRLNVATGQYSYVIVDQKGIDVV
                     ASLFAPDGTLITAVDGPNGSYGEEPVHITAEATGSYKIEITSFDKNAKPGRYEVKLVE
                     LRPAEQRDRDRLVARRAFDEAEKLKTQNTRQSMETAIKKYEEALNLYRIIQDRIEQYL
                     ILLGIGNTELELQQWPLALERFDQAFLIAQDLKDKFRQGRALERGEAVYIGSGEWEKA
                     LQKAAQSLQFFEATGEKNEIALMLGEVGGIYNHLGEWEKALQRHDEALQIYRAIGDKS
                     NEAATLIRIGKIYNDLGEYEKAREFIWPAVRIYQALKDRNLEAGAIESIGYTYHLQEE
                     NQKALEYYLETLPIWQALKNKRREASNLSFIAGEYGRDGDKEKAISYATQAWQLAQAT
                     GSK"
BASE COUNT          482 a          381 c          481 g          382 t
ORIGIN      
        1 taaggggcga aggtttagtg ggtctcgtcc gaggctttat gtatgcggga tcgccccgag
       61 tcgttgcgag cctgtggcaa gttgacgatg ctgcgaccgc cgagttgatg aagcgttttt
      121 atagaggaat gtttcaggag aagttgcctc cgtcggcggc actccgagcg gcgcagatcg
      181 atatgctcaa gcgaaggcat tggcaagcgc cctactactg gagcgcattc gtgcttcagg
      241 gcgagtggcg ataagaggaa agtcagtacc ataacgaata gtttatggct gggtgttcgc
      301 atctgatcgt catgtggaat actgaatcca agaccccagt agttagcaag cctcttcact
      361 taacaatcta actttcacga tgctactcaa aaagtcttga tcttgatttc acacaccgga
      421 ataaaatctt ttggtcggca agcacttgcc tgcttgttgt gcttgctgtt tttgatcgcc
      481 cacctgcaga ggattcaaga aagcaaagcg aagagtctcc tgtttcaagg agcgagcgag
      541 gtgcgatggc tagaagtggg aaaaccaatt gagcgagagc tatcgggcgg cgaatcgcat
      601 tcttatcgac ttaacgttgc cacgggacag tattcatacg tgattgtcga ccagaaaggg
      661 atcgatgtgg tcgccagtct gttcgcgcca gatggaacat tgattactgc tgtagacggt
      721 ccgaatggct cgtatggcga agagccagtg catatcactg ctgaggcgac aggcagctac
      781 aagattgaaa taacctcgtt cgacaaaaac gctaagccag gacgctacga agtgaaactt
      841 gtagaacttc gaccggcgga gcaacgagac cgagatcgtc tcgtcgcgcg tcgtgcgttt
      901 gatgaggcag aaaagttgaa gacgcagaac acgcgacaat ctatggagac cgcgatcaaa
      961 aagtatgagg aagctctcaa cctctatcgc ataattcagg atcgcatcga gcagtactta
     1021 atactgcttg gaatcggaaa tacagagttg gagctgcagc agtggccgct tgcactcgaa
     1081 cgcttcgatc aagctttctt aatcgcacag gacctcaaag acaagttcag acagggacga
     1141 gcgcttgaac gtggtgaggc tgtgtatata gggtcggggg agtgggagaa agccctgcaa
     1201 aaagctgccc agtctttaca gttctttgaa gcgactggcg agaaaaacga gatcgctctc
     1261 atgcttggag aggtcggtgg tatttacaac catttgggcg agtgggagaa agctctgcaa
     1321 agacacgacg aggctttaca aatctatcgg gcgattggcg ataagagcaa tgaagctgcg
     1381 acactgataa gaatcggtaa gatttacaac gatttgggtg agtacgagaa agcgcgagaa
     1441 ttcatttggc cggccgtacg aatctaccag gcactcaagg atagaaatct agaggcgggg
     1501 gcgatcgaat ccataggcta cacatatcat ctacaagaag aaaaccaaaa agcactcgag
     1561 tattatctag agacgttacc aatctggcag gctttgaaaa acaagcggcg cgaagcgtct
     1621 aatctatctt tcatcgctgg tgaatacggc cgcgatggtg ataaggagaa agcaatttcc
     1681 tatgccacac aagcttggca actcgctcaa gctaccggaa gcaaag
//
LOCUS       DATCGC010001060         1098 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_448817, whole genome shotgun sequence.
ACCESSION   DATCGC010001060 DATCGC010000000
VERSION     DATCGC010001060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1098
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_448817"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..501
                     /locus_tag="VIJ87_10315"
     CDS             <1..501
                     /locus_tag="VIJ87_10315"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5444843.1"
                     /translation="CFEGALALYPEYIAARNDLGAQYLKLKRVDEAEKHFQIVLGNDP
                     KNFNATFNMGLVQVERRDYLGAIATLNQAISIDSSRPVARLWIGIAKLEMGNTAEAEP
                     ELTKSLIMGGAECVAAHYHLARIYAARGDFSEAAKALRSYLDEAPRGEFVKEAKQLQQ
                     QIEKRK"
     gene            complement(533..>1098)
                     /locus_tag="VIJ87_10320"
     CDS             complement(533..>1098)
                     /locus_tag="VIJ87_10320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444844.1"
                     /translation="QDLDAARKESVLFYREAQLPPGKYQVELVAYDATSHTANVSTSS
                     LEVPATDDARLRMSSVAVLKRAERLSPEEQKRDQPLRFGELLVYPNLGERIDRASAKQ
                     LAFFFTAWSPKGATGPMKVTLEILQNHQPVGKTTGDLPPADAQGQIKYASSFPLDKFQ
                     PGLFELKVTVSDGKNNVSRTTQFTLVG"
BASE COUNT          265 a          269 c          291 g          273 t
ORIGIN      
        1 tgttttgaag gagcattggc gctctatccg gaatatattg ccgcccgcaa tgatctgggg
       61 gcgcagtatc tgaaactgaa acgagtggat gaagcagaga agcactttca gattgtcctg
      121 gggaacgatc cgaaaaactt caatgcgact ttcaatatgg ggttggttca ggtcgaacgg
      181 cgagattacc tgggagccat tgcgaccctg aatcaggcga tttcaatcga tagttcgcgg
      241 cccgtagcgc gtttatggat tggtattgcc aaactggaga tgggaaacac ggctgaagca
      301 gagcctgagt taacgaagtc gctaatcatg ggcggagcag aatgcgtggc agctcactat
      361 cacctggcgc gcatttacgc tgcgcgtgga gattttagcg aagcagctaa ggcgcttcgt
      421 tcttatctcg atgaagcacc ccgcggggag ttcgtcaaag aagccaaaca actgcaacaa
      481 caaatcgaga agcgtaagta gatttccgac gactggcgtc ctactcaatc ggttacccaa
      541 ccagagtaaa ctgagtggtt ctgcttacgt tgttcttgcc gtcactcacc gttaccttca
      601 actcaaacaa tccaggctga aatttgtcga gtggaaaaga actcgcgtac ttgatctgac
      661 cctgggcatc cgctggcgga aggtctcctg ttgttttgcc gactggttga tgattctgaa
      721 gaatctccaa ggttaccttc attggcccag tagcaccttt tggcgaccat gcggtgaaga
      781 aaaacgccaa ctgtttggct gatgcgcggt caattcgttc gcctaaattt ggataaacaa
      841 gtagttcgcc aaaacgcaaa ggctgatcgc gcttttgctc ctccggtgac aatcgttcgg
      901 cacgcttcag tacggcaacg ctgctcattc gcagcctggc gtcatcggtg gccggtactt
      961 ctaaacttga ggtgctgacg tttgccgtat gacttgttgc gtcataagcg accagttcaa
     1021 cttgatattt acccggtggc aattgcgcct ctcgatagaa gagcacgctt tccttcctgg
     1081 ccgcatcgag atcttgaa
//
LOCUS       DATCGC010001061         1303 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_148173, whole genome shotgun sequence.
ACCESSION   DATCGC010001061 DATCGC010000000
VERSION     DATCGC010001061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1303)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1303)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1303
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148173"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..397)
                     /locus_tag="VIJ87_10325"
     CDS             complement(<1..397)
                     /locus_tag="VIJ87_10325"
                     /inference="COORDINATES: protein motif:HMM:NF017365.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline racemase family protein"
                     /protein_id="HEY5444845.1"
                     /translation="MPMLTRIKVIDSHTGGEPTRTVISGGPDLGDDSLAIRRERFRNH
                     FDYFRSAITNEPRGSDAMVGALLCEPVDKSCVTGVIFFNNVSYLGMCGHGTIGIVATL
                     AYLNRIGPGSHRIETPVGIVEALLDENGEV"
     gene            537..>1303
                     /locus_tag="VIJ87_10330"
     CDS             537..>1303
                     /locus_tag="VIJ87_10330"
                     /inference="COORDINATES: protein motif:HMM:NF012787.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HEY5444846.1"
                     /translation="MFWQESTKIRLVVGLVVSGILIVSIGLTKGWQVFGSLVPTFAAS
                     TREVATSDAEMAPEFAPGNWINSEPLTLKGLNGRVVLVEFWTFGCYNCRNTLPFVKSW
                     HDRYASKGLTIVGVHSPELEDEYKLENVRREVASLGIRYPVVTDNDYATWKAYKVNAW
                     PTIYLLDKRGKVRWAHVGEGAYDEAEKTIQKLLAENENQMSKQEKQMSDTEKIVKTDE
                     QWQKELSPDQYQVLRQAATERAFTGAYWDNHEHGTYY"
BASE COUNT          357 a          296 c          357 g          293 t
ORIGIN      
        1 tgacctcacc attttcatcc agcaaagctt ccacgatccc cacaggagtt tcaattcgat
       61 gactaccggg accgatgcga tttaggtagg cgagcgttgc gacaataccg atcgttccgt
      121 gaccgcacat gccgaggtaa ctgacgttat tgaagaaaat taccccggtt acacaagatt
      181 tatcgacggg ttcgcataaa agtgcaccca ccatggcatc cgatccgcgg ggttcattcg
      241 taattgctga tcggaagtaa tcgaaatggt tgcgaaaacg ttcgcgccga atggcaagcg
      301 agtcgtcacc caagtcgggt ccaccggata ttacagttcg cgtcggctcg ccaccggtgt
      361 gagaatcgat cactttaatt cgagtaagca taggcatggg ctatgactct ccattgaatt
      421 cgctgaccga acgagtgtct aatgcgggta tgtcccggac attattactg agttgtaatg
      481 aatctgcatc tgaagcacct ggttcagcga gatgatctga caaaaaagga agcattatgt
      541 tttggcaaga aagtacaaag attcgactgg tagttggact agtcgtctca ggcattctga
      601 ttgtgagtat aggattgacg aaaggttggc aagtgtttgg ctcactcgta ccaactttcg
      661 cggcgagcac tcgggaagtt gcaacctcgg acgccgaaat ggctccggag tttgcgccgg
      721 gtaattggat caactctgag ccgttgacgc tgaaaggtct taatgggcgc gttgtactcg
      781 tcgagttttg gacgttcggt tgttacaact gccgtaacac gttgccattt gtaaagagct
      841 ggcatgatcg atatgcgagc aaaggcctga cgatagttgg cgtccattca ccagaactgg
      901 aggacgaata taagcttgag aacgtacgac gcgaagttgc gtcactcggc attcgttatc
      961 cagtagtgac tgacaacgac tacgcaacct ggaaagcgta caaagtcaac gcctggccga
     1021 cgatctattt actcgacaag agaggcaaag ttcgctgggc gcacgttggc gaaggagctt
     1081 acgacgaagc ggaaaagaca attcaaaagt tgctagcgga aaacgaaaat cagatgagca
     1141 agcaggagaa gcagatgagt gacacggaaa agattgtgaa gactgacgaa cagtggcaga
     1201 aagagctgtc gccggaccag tatcaggtgc tgcgtcaagc ggcaactgaa cgcgcgttta
     1261 caggggctta ttgggacaac cacgaacacg gcacttacta ttg
//
LOCUS       DATCGC010001062         1099 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_213966, whole genome shotgun sequence.
ACCESSION   DATCGC010001062 DATCGC010000000
VERSION     DATCGC010001062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1099)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1099)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1099
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213966"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..925
                     /locus_tag="VIJ87_10335"
     CDS             <1..925
                     /locus_tag="VIJ87_10335"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY5444847.1"
                     /translation="TGREKFIAFFNSFHGRTLGSLSLTSSRAAQRRGFKRQALDVVHV
                     PYPNEFRNPFNAADCGDGGAGQGALNWIEERLFKTTTPPDEVAAIVVEAVQGEGGYVP
                     APKGFLNGLRRICDQHGILLIVDEVQSGMGRTGKMFASEHYDVQPDIVCIAKGIGSGL
                     PIGACVARADLMDWKPGAHASTFGGNPVCIAAALKTIELLEGGLVKNSAEVGAYLKAG
                     LEKLQKKYDCIGDVRGMGMMIGVEFVEDKASMKPAADLRDRIEVACFDRGLIILGCGN
                     NAIRWSPPLILTRENVDVALEIFDEAIAASL"
BASE COUNT          249 a          264 c          327 g          259 t
ORIGIN      
        1 gaccgggcgt gagaagttca ttgcgttctt caacagcttt cacggtcgaa cactcggctc
       61 gctttcgttg acgtcttcaa gggctgcaca acgaagagga ttcaagcggc aggcgctcga
      121 cgttgttcac gtgccctatc cgaatgaatt tcgcaatccg ttcaacgctg ctgactgtgg
      181 tgatggtggc gctggccagg gcgcattaaa ttggatcgaa gaacgactct tcaaaacaac
      241 tactccgccc gatgaagttg ctgcgattgt ggtcgaggcc gtacagggtg aaggtggata
      301 tgtaccggcg ccgaaaggat tcctgaatgg gttgcgtcgc atctgcgatc agcacggcat
      361 ccttttgatt gttgatgaag tgcagtctgg aatgggacgc acgggaaaga tgttcgcgtc
      421 tgaacattac gacgtgcagc ccgacatcgt atgtatcgcc aaaggaattg gctccggtct
      481 accgatcggg gcgtgcgtcg cgcgtgccga tctcatggac tggaaaccgg gggcacacgc
      541 gtcaacgttt ggtggcaatc cagtttgtat cgcagctgca cttaagacga ttgaattact
      601 tgaaggcggg ttggtgaaga acagtgccga ggttggagct tacttaaaag ctggtctcga
      661 gaagttgcag aaaaagtatg actgcatcgg cgacgtgcgc ggaatgggta tgatgattgg
      721 cgttgagttt gttgaagaca aagcttcgat gaagccggca gcagacttga gagatcgaat
      781 cgaagtcgcc tgtttcgatc gcggtctgat cattctcggg tgtggaaata acgcgattcg
      841 ctggtcgcca ccgttgattc tgacgagaga gaatgtcgac gtcgcattgg agattttcga
      901 cgaggcaata gcggcttcgc tctaaatact agtcagtacc acaacgcggt agcgtgtggc
      961 tgagcatccg gttcaggaac tctcgtggta ccacgggaca tcacgatctg gattgctcag
     1021 ccacacgcta ccgcgttgtg gtactgacta aaacctctgc gtcacaccct tcacacaccg
     1081 cactgtgtcg cgcgcgctt
//
LOCUS       DATCGC010001063         1436 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_49695, whole genome shotgun sequence.
ACCESSION   DATCGC010001063 DATCGC010000000
VERSION     DATCGC010001063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1436)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1436)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1436
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49695"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1436
                     /locus_tag="VIJ87_10340"
     CDS             <1..>1436
                     /locus_tag="VIJ87_10340"
                     /inference="COORDINATES: protein motif:HMM:NF025861.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 97 catalytic
                     domain-containing protein"
                     /protein_id="HEY5444848.1"
                     /translation="MTAFELSSPNGKIQITIQTGDRLTYDVLVNGKPVLKNSTLALDV
                     DHKILGSNPLVKTTKTDAVDRVIQSPVPQKSVKIHEAYRELRLEMEGNYAIIFRAYNE
                     GIAYRFETVLPAREVKIYNEDVKLNFNGDYSVYYPKEDSLFSHNEREFLYLPLKDIPA
                     TSIASLPAVVDTKDGIKLIVGESDVDDYAGLWLQGNSNNSLSGMFPHYPLKEEKKNDR
                     NVQVTQTADYIASTNGTRTFPWRIIGVAEKDADLITNHLVYLLAKPSQVQDTSWIKPG
                     KVAWDWYNANNISGVDFKSGVNTQTYKYYIDFASKYGIEYIILDEGWYKLGNVLQVVP
                     EMNIEELVAYGKQKNVGIILWVVWKTLDEQFDAALAQYEKWGIKGLKVDFMQRDDQPI
                     MNFYTKVCREAAKRKMLVDFHGAIRPATMTRTWPNLVNTEGVRGLEQNKWSKYSSPEH
                     NVTLPFTRMFLGPLDYTPGAMVNSGLEK"
BASE COUNT          408 a          380 c          346 g          302 t
ORIGIN      
        1 ccatgaccgc ctttgaattg tcgtccccga acggcaagat ccagataaca attcagaccg
       61 gtgaccgatt aacttacgac gttctcgtaa acggcaaacc agtcctgaag aactctacac
      121 tggctctcga cgtcgaccac aaaatacttg gctcaaaccc tctcgttaag acgaccaaaa
      181 cggacgcggt cgatcgtgtt atccaatctc ccgtcccaca aaagtccgtg aagattcacg
      241 aagcctacag agagttgcgg ctggagatgg agggtaacta tgcgatcatc tttcgcgctt
      301 acaacgaagg aatcgcttat agattcgaga ccgtgctgcc cgctcgcgaa gtcaaaatct
      361 ataacgaaga tgtgaagcta aacttcaacg gcgactacag cgtctattat ccaaaggaag
      421 acagtctctt ctcgcacaac gaacgcgagt ttctttatct gcctctcaag gacatcccgg
      481 caacttcaat tgcgagtttg cccgcggtcg ttgacacaaa agacggaatc aaactgatcg
      541 tcggcgagtc ggacgttgac gactatgcag gcttgtggct gcaaggcaac agcaacaaca
      601 gtctctccgg aatgtttccg cactatccac tcaaagaaga aaagaaaaat gaccgcaacg
      661 tccaggtaac tcaaacggcc gattacatcg cctctaccaa cggcaccaga acgtttccgt
      721 ggcgcatcat tggcgttgcg gagaaagatg ccgatctaat tacgaaccac cttgtttatc
      781 tgctggccaa accttcgcaa gttcaagaca cgtcctggat caaacccggc aaagttgcgt
      841 gggactggta caacgccaac aacatttccg gcgtggattt caaatcaggg gtcaacaccc
      901 agacctacaa gtactacatc gatttcgctt caaagtatgg catcgaatac atcatcctcg
      961 acgaaggctg gtacaagctt ggcaacgtgc tccaagttgt cccggagatg aacattgagg
     1021 agttagtcgc ttacggtaag cagaaaaacg tcgggatcat tttgtgggtt gtttggaaga
     1081 cacttgacga gcagttcgat gcggcactcg ctcagtacga gaagtgggga ataaaaggat
     1141 taaaggtcga cttcatgcag cgcgacgacc aaccgataat gaacttctac acgaaggttt
     1201 gccgcgaagc cgcgaagcgt aaaatgctgg tcgactttca cggcgcaatt cgtccggcaa
     1261 cgatgacacg cacctggccc aatctggtga acactgaagg agtgcgcgga ctggagcaaa
     1321 acaagtggag caagtattcg agccccgaac ataacgtcac acttcccttc accagaatgt
     1381 ttcttggccc gttggactac actccaggcg caatggtcaa cagcggcttg gaaaag
//
LOCUS       DATCGC010001064         1470 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_317528, whole genome shotgun sequence.
ACCESSION   DATCGC010001064 DATCGC010000000
VERSION     DATCGC010001064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1470)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1470)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1470
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_317528"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..483
                     /locus_tag="VIJ87_10345"
     CDS             <1..483
                     /locus_tag="VIJ87_10345"
                     /inference="COORDINATES: protein motif:HMM:NF016992.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilN domain-containing protein"
                     /protein_id="HEY5444849.1"
                     /translation="QQMLAVQREQTELEKKAQEIQARIDAIKRLRESQQGPSAVLHEI
                     KARFDAVPGLYLKSIEQKDGEITIKGESPNEYSVTKFGQSLEFSNGLFSNLNIETLRE
                     AAKEVAGANNAPTPVAADPNMPKPEVVSFTVRANFGMPKPQPAQPATASTANQVAMKK
                     "
     gene            524..1174
                     /gene="pilO"
                     /locus_tag="VIJ87_10350"
     CDS             524..1174
                     /gene="pilO"
                     /locus_tag="VIJ87_10350"
                     /inference="COORDINATES: protein motif:HMM:NF016253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA];
                     GO_process: GO:0043683 - type IV pilus assembly [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type 4a pilus biogenesis protein PilO"
                     /protein_id="HEY5444850.1"
                     /translation="MKFGKLPHLPWYLRLIVFVAVAGVMYAGFWYFMTRGTRTETKTM
                     QDEIAQLKPRNAQAQIASQRLNEFRAIYKAREEEYAELKALLPEQRELTMVLQGIQDR
                     AHNSGLVLARFNPKEDMQQDNYSGKKIEVGVVASFAGLRAFFEQLAHYQRIVSVTNFE
                     LKQLDKQSPTKTVDARFDLTAFYVSAERLQGQAQQSPNKAGSGGPAPAPAAPQPAK"
     gene            1219..>1470
                     /locus_tag="VIJ87_10355"
     CDS             1219..>1470
                     /locus_tag="VIJ87_10355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444851.1"
                     /translation="MMNNNSKRFGFAGLLMGGAMLIIGGTVSVAMSQSSQKQATPKTR
                     TVSSGRDPFRKYEPPKAVLRRVAGEAAVPTIQERINLYKA"
BASE COUNT          403 a          384 c          380 g          303 t
ORIGIN      
        1 cagcaaatgc ttgctgttca acgcgaacag acggaactgg aaaagaaagc gcaggagatc
       61 caggctcgca tcgatgcgat caagagactg cgtgagtctc aacagggccc gagtgctgtg
      121 ctacacgaga tcaaggcccg ctttgatgca gttcctgggt tgtatctcaa gagcatcgaa
      181 cagaaggatg gagaaatcac tattaagggc gaatcaccaa atgagtattc ggttaccaag
      241 tttggacaga gccttgagtt ctcgaacggc ttgtttagca atctgaacat cgagactcta
      301 agagaagctg ccaaggaggt agccggggcc aataacgcac ctactccggt agcagccgat
      361 ccaaacatgc cgaagcccga ggtcgttagc tttactgtcc gggcaaactt cggaatgccc
      421 aagccgcaac cggctcaacc cgccactgcc tcaactgcaa accaggtagc aatgaagaag
      481 taacgacttc ccattagacc tcaaaacgat aaggaacact caaatgaaat tcggcaagct
      541 tccacacctt ccctggtacc tgcgattgat tgttttcgta gcagtcgccg gcgtgatgta
      601 tgccgggttc tggtacttca tgacgcgcgg cacgcgtacc gaaaccaaaa ccatgcagga
      661 tgaaatcgcg cagctcaagc cgcgtaatgc tcaggcacaa attgcttcgc agcgtttgaa
      721 cgagttccgc gctatctata aggctcgtga agaagaatac gccgagctta aagcgctgct
      781 tcctgagcag cgcgaactca caatggtctt gcagggaatc caggatcgcg ctcacaacag
      841 tggtttggtc ctggctcgtt tcaatcctaa agaggatatg caacaagaca actatagtgg
      901 caagaaaatc gaggtaggag ttgttgcctc attcgcggga ctcagagcgt tcttcgagca
      961 gcttgctcac tatcagcgca ttgtttcggt taccaatttc gagttgaagc agttggacaa
     1021 acagtcaccc acgaagactg tcgatgcacg ttttgatttg actgcctttt atgtttccgc
     1081 agagcgtctg caaggtcagg cgcaacaaag ccccaacaaa gctggatccg gtggaccagc
     1141 gccagcgcct gccgctcctc aacctgcaaa gtaagtgcga acttaagcgc agacgcacac
     1201 aaggaagtga aaacgaccat gatgaacaac aactcaaaga gattcggatt cgccggtttg
     1261 ctgatgggtg gcgccatgct gatcatcggt ggcaccgttt cagttgccat gtctcagagc
     1321 tctcaaaagc aagcaacgcc gaagacccgt acggtgagct caggccgcga tcctttcagg
     1381 aaatacgaac cacctaaagc tgtcttaagg cgagttgcag gtgaagccgc ggttcctacg
     1441 atccaggaac ggatcaatct gtacaaggca
//
LOCUS       DATCGC010001065         1008 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_448909, whole genome shotgun sequence.
ACCESSION   DATCGC010001065 DATCGC010000000
VERSION     DATCGC010001065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1008
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_448909"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(142..>1008)
                     /gene="menC"
                     /locus_tag="VIJ87_10360"
     CDS             complement(142..>1008)
                     /gene="menC"
                     /locus_tag="VIJ87_10360"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: protein motif:HMM:TIGR01928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HEY5444852.1"
                     /translation="DVSHFYELLRAQGVDSFAKAGIEGALRDICARKNDVSLNTLLGG
                     RTRPIPSGVAIGIYDDIGELLERVERYTAQGYRRVKIKIEPGWDVKPVTEIRSRFPEL
                     SLMVDANAAYSLTDLAMFQELDTHGLMMIEQPLARSAYEEAGELQRSLRTPLCADESA
                     DSLEALGSLIEHKAARIINIKVQRVGGLSEAILMLNSARAAGLECWVGTMPELGIASA
                     QGLHFATLDGFSCPTDIEASMRWYVDDVIDPLIEIDELGYIHLPEGPGLGYRVVREKV
                     ERYAMARAEFTN"
BASE COUNT          249 a          296 c          229 g          234 t
ORIGIN      
        1 cctctaggat ttatcaagac ccgccaacgc ggggtgaaag gtaaacctgc aaaaacttat
       61 tcggttcagc attgccaaat tgccggggca cctttaaatc tgaatcaaac tgatcccaag
      121 actttctttc agcgagacca atcaattagt aaattccgcc cgcgccattg cgtaacgttc
      181 cactttttca cgcaccacgc gataacccaa acctggtcct tcaggaaggt gtatgtatcc
      241 cagttcatca atctcgatca atggatcgat cacatcgtca acgtaccagc gcatggaagc
      301 ctcgatgtct gtcggacacg aaaaaccgtc cagcgtcgcg aagtgcaaac cctgcgctga
      361 agctattccc aactcgggca tcgttccgac ccagcattcg agtccggccg cgcgcgcaga
      421 attaagcatg agtatggctt cgcttaatcc gccaacgcgt tgaaccttga tattgatgat
      481 tcgagcagcc ttgtgctcaa taagtgaacc gagcgcctcc agcgaatcgg ccgattcgtc
      541 ggcacagagc ggagtgcgca aactacgctg caattcacct gcctcttcgt aagcacttcg
      601 tgctaacggt tgttcgatca tcatcagacc gtgcgtatcc agctcctgaa acattgcgag
      661 gtcggtcagc gaatatgcgg cattggcatc aaccatcaat gacaactcag ggaatcgcga
      721 tctgatttct gttaccggct tcacatccca acccggttca atcttgatct tgacccgtcg
      781 atagccttgg gctgtgtacc gctctactcg ttccaacaat tcgccaatgt cgtcatagat
      841 gccgatggca acgcctgatg ggatcggtcg agtccgacct ccaaggaggg tattgagaga
      901 cacgtcattc tttctagcgc aaatgtcccg caacgctccc tcgatccctg ctttcgcaaa
      961 cgaatcaacg ccctgtgccc gaagcaattc gtaaaagtgg gacacgtc
//
LOCUS       DATCGC010001066         1516 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_347450, whole genome shotgun sequence.
ACCESSION   DATCGC010001066 DATCGC010000000
VERSION     DATCGC010001066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1516
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_347450"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(60..1256)
                     /locus_tag="VIJ87_10365"
     CDS             complement(60..1256)
                     /locus_tag="VIJ87_10365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444853.1"
                     /translation="MRFVIKFALIIVILLVALVQPLRLSAQSQQPLTSKEIVSLLYQL
                     PRYPEKRDELVEEIRKRGIGFPLTDGMRSLVATKSGNDALLRRTLEEAERRRVNPTES
                     ALPSSTEGTELLERTRNVTLAAANAMPDFIVKQLIRRSVAYGTTTNWIPQDTLSIAVG
                     YRANQGEEYKLLSVNGIPPGDDVKEGKDYSKYVKGATSSGVEYISALADIFRPESQTE
                     FRMVDTDTILGRRTIVYEYVVHAEQSKLTLSVGDTGASTVAGSQGRLWIDREFDRVLR
                     FEQIATEIPSGFPITSASSLIDYDWVSISEHKYLLPFHSEILMTTVQPKLVLQSRNDV
                     RFRAYQKFGAELKVVDEVGEDDEPTTATPPAKPKVDKPVTTPTLPQPLPADGAPPPPK
                     LKKPVG"
BASE COUNT          339 a          397 c          390 g          390 t
ORIGIN      
        1 ctgactacct cgctcccgtc aaatgatata tgcccaatga ttcggtctat gccagacgct
       61 tagccgacgg gttttttgag ttttggcggt ggcggtgcac catcagctgg taacggttga
      121 gggagggttg gcgtagtgac tggcttgtcg actttaggtt tcgcaggtgg agtggctgtg
      181 gttggctcat catcctcgcc aacttcgtcg acgactttca actccgcacc aaacttctga
      241 taagctcgaa atcgaacatc gttgcgactt tggagcacaa gtttgggttg aaccgttgtc
      301 atcaagatct cagaatgaaa cggcaacaga tacttgtgtt cgctaatgct cacccagtcg
      361 tagtcgatca aactgcttgc ggaagtgatt gggaagccac tcggtatttc tgtggcgatc
      421 tgctcaaatc tcaacacccg atcaaactca cgatcgatcc agagtctccc ctgtgagcca
      481 gcaactgtac tcgcaccggt gtctcccacg gagagcgtta gtttggattg ctccgcgtga
      541 acgacgtact catacacgat cgttctgcgg ccgagtatcg tgtccgtatc aaccatgcga
      601 aactcagttt gagactccgg cctgaagatg tcagccaacg ccgagatgta ttcaacgcca
      661 ctcgacgtcg cacctttgac gtacttgctg tagtccttac cttccttaac gtcgtctcct
      721 ggaggaatac catttactga aagcagcttg tactcctcgc cctggttggc tcgataacca
      781 accgcgattg aaagcgtgtc ttgcggaatc cagttcgtag ttgtgccgta ggctacggaa
      841 cgacgaatca attgcttcac gatgaagtcg ggcatcgcat tcgccgccgc aagcgttacg
      901 ttccgggttc gttcaagcag ttcggtgcct tcggttgacg aaggcaaggc tgattcggtt
      961 gggttaacac gacgccgttc agcttcttca agcgtgcgcc gcaataacgc gtcgttgcca
     1021 ctcttggttg cgacgaggga acgcattcca tcggttaacg ggaatccaat tccacgttta
     1081 cgaatctctt cgacaagttc atcccgtttt tccggatagc gcggcagttg ataaagcaag
     1141 gagacgatct ctttgctggt aagaggttgc tgcgattgag cggatagtct gagcggttga
     1201 actaacgcta cgagcagaat gacgataata agggcaaact taataacaaa acgcattacg
     1261 ggagaacctt cgtaaacaga tgatgtatta gtaatagact tccgatgggt ttacggccaa
     1321 tagtggttgc cttgactgtc gctagcttaa cgtaaccctc ccatttctcg aagcgaccag
     1381 cgcgatcccc tttagtgacg ccctggttgg atggggtgtg ctcttctgga ccgcaggccc
     1441 ccccgcctgt cccctattta acaagcaacc aacttcttgc tcctttagcg aggttctaag
     1501 cctcgtagcg agcggt
//
LOCUS       DATCGC010001067         1906 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_413282, whole genome shotgun sequence.
ACCESSION   DATCGC010001067 DATCGC010000000
VERSION     DATCGC010001067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1906)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1906)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1906
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_413282"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            181..>1906
                     /locus_tag="VIJ87_10370"
     CDS             181..>1906
                     /locus_tag="VIJ87_10370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444854.1"
                     /translation="MKKCLFIVLILFIATPIALAQVPSASPRPANPAPVQQREGARFE
                     VSEYGISFQADTRLIIMMAALEAAGFDPQPGKEPSVFRAKVRKDLASLDPDLKARLKT
                     FYERNLLPSPATPADQVSRYVSLALALSPAPELLAPERSDDLPAGLLDVLDFAPLVRE
                     FQRRSGIEEHLVDYVRAYQGEGDRLLQPTSEMVRSVLTYLHTRPLTTTIERVEVKTPT
                     ARKNKNTKTYSTRQKERRFVILPDLLAPHGAINFRIIGDDYYAIIPEGTDPTSSELRR
                     AYLQYVIDALVLRFNKEIALRRDQIRQLLDERQKAGAQVTPDVFLTVGRSFVAAADAR
                     YEEVRRLEVLGRSARAQLAAAKDDAARMLIGKAAQAEIAGIQDETIARLADEFEKGAV
                     LTFFFSDQLKGIESAGFDVANFFPDMIASFDPARESKRPAEYAEAKQRAVAAREARVA
                     ARRAEADMSSAGNANKPKDAALVKELSAVEDTLRTKNYNDAEVRLKSMLQSYPGEPRI
                     FFALGQTASLSAMDATDANIQAERLNRALGQYRLAVQASSPELDKAILSRAHESMGRI
                     NAFLDNKNE"
BASE COUNT          462 a          502 c          507 g          435 t
ORIGIN      
        1 tcactgattg cttatccgtt aacattgcgg gcgttacgtg ccgttcgcga ccgaaaggct
       61 attaagagtt gaaagaccgt aagagagttt ggcatcggcc ttacctcgtc gcgcatctac
      121 ttttctcggc aaatcaataa atcagctctg caaacgccaa cattgagtga attttagttt
      181 atgaagaagt gtctatttat cgttctgatc ttgtttattg cgactccaat cgctttagct
      241 caagttcctt cagcttcacc gcgtcctgcc aatcccgcgc cggtacagca acgtgaaggg
      301 gcccgttttg aagtttctga gtacggtata agttttcagg ctgatacacg cctaataatc
      361 atgatggcag cactggaggc tgccggattc gacccccagc ccggtaaaga gccgtcggtg
      421 tttcgagcga aagtaagaaa agatctcgcg tcactcgacc ctgatctgaa ggcgaggctt
      481 aagactttct acgaacgaaa tcttctgcct tcgccggcaa caccggctga ccaggtgtcg
      541 agatacgttt cgttagcgct ggccctttcc cccgcacctg agcttctggc ccctgaacgt
      601 tcagacgact tgcccgcggg acttctggat gttctcgact ttgctccgct tgttcgtgag
      661 tttcagcgca gatccggaat cgaagagcac ctcgtcgatt acgttcgtgc ttaccaggga
      721 gagggcgaca gacttcttca gccaacttct gaaatggtga ggagcgtcct gacttaccta
      781 cacacgagac cgctcaccac gactattgag cgagtcgaag tgaagactcc aaccgccagg
      841 aagaacaaga acaccaagac ttacagtacg cgtcaaaagg agcgacgttt tgtaatcctg
      901 ccagacttat tagcgccgca cggtgcgatc aacttccgaa tcattggtga cgactactac
      961 gcaattattc ccgaaggcac agatccgaca tcgtcggaat tgcgacgcgc ctacctgcaa
     1021 tacgtaatcg atgctctcgt gctgcgcttc aacaaggaaa tcgcgttgcg acgagatcag
     1081 attcgacaac tacttgatga acgacagaag gcaggagccc aggttactcc agatgtgttt
     1141 ctgactgtcg gtcgttcttt tgtcgcggct gcagatgctc ggtacgaaga agtgcgcagg
     1201 ttggaagtgc ttggacgctc agcgcgagct caacttgcgg ccgctaagga cgacgctgcg
     1261 cgcatgttaa ttggcaaggc tgcgcaagcg gagattgcgg gcattcagga tgaaacaatt
     1321 gctcgtcttg ccgacgagtt tgaaaaagga gcagtgctca ctttcttctt ctccgaccag
     1381 ttgaagggca ttgaatccgc cggctttgat gtcgcgaact tctttcccga catgatcgcc
     1441 tcgttcgatc cggcacgcga gtcgaagcgc cccgccgaat acgctgaagc taaacagaga
     1501 gcagtggccg cacgtgaagc gcgcgttgct gcgaggcggg ctgaagcgga tatgagttcc
     1561 gctggaaatg caaacaaacc gaaagatgcg gcactggtca aggagctgtc agcagtagaa
     1621 gatacgctgc gcacgaagaa ctacaacgac gcggaggttc ggctcaagag catgctgcaa
     1681 agttatccag gtgaaccgag gatctttttt gcactcggtc aaacagcaag tctgtcggca
     1741 atggacgcca ctgatgccaa tattcaggcc gaacgattga atcgtgccct ggggcagtat
     1801 cgcctggcgg ttcaagcgtc ctcaccagag ttagacaagg caattctctc gcgtgctcac
     1861 gagtcgatgg gacgaatcaa tgccttcctg gacaacaaga atgaag
//
LOCUS       DATCGC010001068         1106 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_182236, whole genome shotgun sequence.
ACCESSION   DATCGC010001068 DATCGC010000000
VERSION     DATCGC010001068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1106)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1106)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1106
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_182236"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1106)
                     /locus_tag="VIJ87_10375"
     CDS             complement(<1..>1106)
                     /locus_tag="VIJ87_10375"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY5444855.1"
                     /translation="WEAAALWIYDKETGTLRLGDIWHTANVNIENFEAASRQQNFAPG
                     VGLPGRVWQQRVPVWIADVADDENFPRATAALADGLRSAFGFPIVSDDELLGIGEFFS
                     HEIREPDDALLAMFRSAGTQIGQFIKRQRAEELLRAKESELAYITDTTPIMLARCSSD
                     LKYVFVNRAYASMLQKSPEELVGKSIVDMVGAEGMSTLKPYIDKVLSGHIVEFEDLIA
                     FRGIGSRFLRTTYRPERSENGEVVGWLASIADITDRKNAEQALRDSERELTEFFKNAT
                     EAIHWMKQDGTILRANEAELRMMGYSEEEYIGRNIVDFHVDRNVVDELVGRLIAGETI
                     ENFRSRLRHKNGSILEVTISSSVYFENEKFVHSR"
BASE COUNT          258 a          313 c          243 g          292 t
ORIGIN      
        1 caccttgaat gaacaaactt ttcgttttca aaataaacac tggaactgat tgtcacctcc
       61 agaatggatc cgtttttgtg tcggagtcgc gatcgaaaat tctcgatggt ttctcccgca
      121 atcaatcttc cgactagttc gtcgacgaca tttcgatcga catgaaagtc gacaatgttt
      181 cgaccgatat actcctcctc tgaataaccc atcattcgga gttcggcttc gttcgcccga
      241 aggatcgttc cgtcttgctt catccagtgg attgcttcgg tggcgttctt aaaaaactct
      301 gtcagctccc gctcgctatc tcttaatgcc tgctctgcgt tttttcgatc cgtaatatcc
      361 gctattgaag cgagccaacc gactacctcg ccgttctcgc ttcgttccgg gcgataggtt
      421 gttcgtaaga accgcgagcc gattcctcgg aaggcaatta gatcctcaaa ctcgacaatg
      481 tgtccgctca agactttgtc aatgtagggt ttcagcgttg acattccctc ggcgccaacc
      541 atatccacaa tcgacttccc aacgagttcc tctggggatt tttgtaacat cgatgcatag
      601 gcacgattca cgaaaacgta cttcaaatca ctactgcagc gagcaagcat tatcggcgtc
      661 gtatctgtga tgtaagcgag ttcagactct tttgcgcgta acaattcctc cgctcgttgg
      721 cgcttaataa actgaccgat ctgagtgcct gcgctccgaa acatcgcaag caaagcgtcg
      781 tcgggttccc tgatctcatg actaaagaac tcaccaattc ccagcagctc gtcgtctgac
      841 acaatcggaa acccaaacgc cgaacgcaat ccatcggcaa gggctgctgt tgcgcgtggg
      901 aagttttcat cgtctgccac gtctgcaatc caaacaggca cgcgttgctg ccaaactcga
      961 cctggcaaac ccacacctgg cgcaaagttt tgctgtcgtg aagcggcttc aaaattttcg
     1021 atgttgacgt tcgccgtatg ccaaatatcg ccgagacgta gagtgccggt ttccttgtcg
     1081 tagatccaaa gcgccgcggc ttccca
//
LOCUS       DATCGC010001069         1317 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_214042, whole genome shotgun sequence.
ACCESSION   DATCGC010001069 DATCGC010000000
VERSION     DATCGC010001069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1317)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1317)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1317
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_214042"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..635
                     /locus_tag="VIJ87_10380"
     CDS             <1..635
                     /locus_tag="VIJ87_10380"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF013206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HEY5444856.1"
                     /translation="AVQTVGRASAVPAIERANDTTCVNVIDKDGNLFSATPSGAWLPA
                     VVAGDTGLLMGQRLQSALIDPNSPNVVAPGKRPRITLSPTLVLKGNEPFMVLSTPGGD
                     NQDQALLQVLLNVIEFGMNPQEAVEAPRFDTQHFVSSFDDHEFLPGSLNIESRVGLST
                     IKELSQRGHKVKVQGEWGTLSSPTVIIYDTRTGVAAAGADPRRGRYAVAW"
     gene            685..1143
                     /locus_tag="VIJ87_10385"
     CDS             685..1143
                     /locus_tag="VIJ87_10385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444857.1"
                     /translation="MKNCARRMRALFGIGLVLTLSTYGLANPAHPVIPNPVITFLGAE
                     YLTVSGSQQTRYYFEVFNREAYPPDMFAASPKLPPCGTNTNASRTWIDIFDQNGKRLY
                     GFCAIGKPDDLNKLWFGIPSNEVPPSWIYVEFTDRQTNTKYKSNLAETVL"
BASE COUNT          348 a          353 c          312 g          304 t
ORIGIN      
        1 gtgccgttca aaccgtcggg cgcgcttcag cagtacccgc tatcgaacga gccaacgaca
       61 caacttgtgt caacgtgatc gataaagatg gaaacctttt cagtgctact ccgagtggcg
      121 catggcttcc cgccgtagtt gcgggcgaca ccggtttgct tatgggccaa cgacttcagt
      181 cggcacttat cgacccaaac agtccaaacg tcgtagcgcc tggcaaacgt ccgagaatta
      241 cactatcacc tactctcgta ctcaagggta atgagccttt catggtcttg agtacaccgg
      301 gcggtgacaa tcaagatcaa gcacttctcc aagtgcttct taacgtaatt gaatttggta
      361 tgaatcctca ggaagcagtc gaggcgccaa gatttgatac ccaacacttc gtcagctcat
      421 ttgatgatca cgaatttctt ccaggttcac taaacatcga atcgcgcgtt ggcttgtcca
      481 ccatcaaaga actaagccaa cgcggacaca aggtcaaagt acaaggggaa tggggcacgc
      541 tttcctcgcc aaccgtaatc atttacgaca cccgaactgg agtcgctgcc gctggcgctg
      601 atccgcgtcg aggtcgctac gccgtcgcct ggtgaacgca tcaacagtca tgacctaaaa
      661 ctcaatcttc aggagacccc cttcatgaaa aactgtgccc gaagaatgcg cgcgcttttt
      721 ggtattggtt tggtccttac tctctcaact tacggcctgg caaatccggc ccacccggtg
      781 attccaaacc cggtcattac ttttctgggt gccgaatact taactgttag tggttcacaa
      841 caaacccgct actacttcga ggttttcaac agggaagcct atcctcccga catgtttgca
      901 gcctcgccaa aactgccgcc ttgcggaact aacactaatg cgtcgagaac ctggatcgat
      961 atcttcgacc agaacggcaa gagactctat gggttttgcg ctatcggaaa acctgacgac
     1021 ctcaacaaac tgtggtttgg aataccaagc aatgaagtgc ctccaagttg gatatacgtt
     1081 gagttcaccg atcggcaaac aaatacgaag tacaaatcaa atcttgctga gactgttttg
     1141 tagcgaggac catgaaacgg aaaacattca aggctgaact tctggctggc cacaaagacg
     1201 ctgctgttga agtgccgttt gatccagcaa cagcatgggg cgccgaagcc aaagcattat
     1261 ggaaaggcag acgtggttac gaagttgaag ctacgttgaa tggcgttcgc ttcgaaa
//
LOCUS       DATCGC010001070         1269 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_49813, whole genome shotgun sequence.
ACCESSION   DATCGC010001070 DATCGC010000000
VERSION     DATCGC010001070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1269)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1269)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1269
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49813"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            41..841
                     /locus_tag="VIJ87_10390"
     CDS             41..841
                     /locus_tag="VIJ87_10390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444858.1"
                     /translation="MATVLVRADHDYNSVSKIINLVDPTGAQDAATKAYVDTLVEGLA
                     WKDSVRVKAPSNVTISSPGATIDGITMTTGDRMLLNNQTTTTENGIYVWNGAATPATR
                     AADASTSSELEQAVTTVEEGTSANTTWRQQTVNFVLGTGSPSFVAFGTAASAASETVA
                     GIAEIATQAETDAGTDDARMVTPLKLKTSPFVHKGFASSFGDGSATSYVITHNLNSLD
                     VSVYVYENGGSKRQVVCEVQHTSVNSVTLLFSSSVASNALRALVTKVA"
     gene            841..>1269
                     /locus_tag="VIJ87_10395"
     CDS             841..>1269
                     /locus_tag="VIJ87_10395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444859.1"
                     /translation="MVVPRLADFSPEQGVEVFDLTAQTDLQTGDIFIVVDVSDTTGDG
                     NGTTKKITAATMLAGLQVLGGVPRVKRVGTQHANSTVTGTKVTDLDITLEVGTYIFNY
                     YLITRSATATTGIQFGVNFTGTGTPIEHFRFMDNSSALNTD"
BASE COUNT          332 a          292 c          315 g          330 t
ORIGIN      
        1 cgttgatggc tttgcaagat tagtctaaaa ggagctaaca atggctacag ttttggttcg
       61 tgcagatcac gactataact cagtatctaa gattatcaac cttgttgatc caacaggtgc
      121 acaagacgca gccactaaag catacgtcga tacccttgtt gaaggtttgg catggaagga
      181 cagtgttcgg gtcaaggctc caagcaacgt aaccatctcc tcgcctggtg caaccattga
      241 cggtatcact atgactaccg gcgataggat gttgcttaac aaccaaacta caaccacgga
      301 aaatggtatt tatgtttgga atggtgccgc aactccggct acacgagcag cagatgcaag
      361 tacctccagt gagcttgagc aagcagttac cacggttgaa gaaggtactt ctgccaacac
      421 gacttggcgt cagcagactg tcaacttcgt gttgggtact ggctcaccgt cattcgtggc
      481 gtttggtaca gctgcatcag cagctagtga aaccgttgct ggtattgctg aaattgctac
      541 acaggctgag actgatgccg gtacagatga tgctcgcatg gtcacgcctt tgaagttgaa
      601 gacttcgcct tttgtgcaca aagggttcgc ctcttcattt ggtgatggtt cggcaacaag
      661 ctacgtgatt acccacaacc tcaactcact ggatgtgagt gtgtatgtct acgagaacgg
      721 tggctctaag cgtcaggtgg tatgtgaggt tcaacatact tccgtgaact cggtgacact
      781 gctgttctca tcgtccgtgg cctctaacgc attgagggcg cttgtaacta aggtggcata
      841 atggttgttc cccgtttggc tgatttcagc ccagaacaag gcgtagaagt attcgatcta
      901 acagcgcaaa cggatttgca gacaggagat attttcattg tagttgatgt atcggacact
      961 actggtgacg gtaatggaac tactaagaaa attacagcag caaccatgct tgctgggttg
     1021 caagtgctag gcggtgtacc acgtgtcaag cgtgtcggca ctcagcatgc taactcaacg
     1081 gtaacaggta cgaaagttac ggatctggac atcactcttg aagtcggaac gtacatattt
     1141 aactattacc tgattactag atctgctacc gcaacaaccg gtattcaatt tggtgtcaac
     1201 tttacaggta ctggcacgcc aattgagcat ttccgattca tggacaactc atccgcattg
     1261 aacacggat
//
LOCUS       DATCGC010001071         1113 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_214047, whole genome shotgun sequence.
ACCESSION   DATCGC010001071 DATCGC010000000
VERSION     DATCGC010001071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1113)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1113)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1113
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_214047"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            37..>1113
                     /locus_tag="VIJ87_10400"
     CDS             37..>1113
                     /locus_tag="VIJ87_10400"
                     /inference="COORDINATES: protein motif:HMM:NF016190.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIM44-like domain-containing protein"
                     /protein_id="HEY5444860.1"
                     /translation="MARSFEQLKKFDPNFSEIVFTDFCYALYGKAHDARGGGKAKLDL
                     FSPYLSEEARASLLQRNSSSLQEVKGIIVGSMKVEQIQGLETPLVRVGLLFESNYTEV
                     SGQSEMSYYVVERWQLERKRDVLSPTPAQATALHCPRCGAPLQHDTVGACAFCGTKID
                     SGEFQWYVRSINLVSKEARGPQLTSSVEEVGTDYPSVVQTNFDAIKVDFERNNPEFNG
                     EQFQERARLIFNELQAAWSTMNWERARPHETDNLFQMHQYWIEAYRRQKLRNVIDNCE
                     ITAMEPVKIQEDAFYQGITLRIWAHGLDYTVDSNGKIVSGSNQELREWSEYWTFIRSK
                     QAKSGKTHTDLNCPNCGSPLKVNAT"
BASE COUNT          293 a          272 c          293 g          255 t
ORIGIN      
        1 atgcaatcag ttggttcctc ctactcgccg gacgtagtgg cacggagttt tgaacagctg
       61 aagaaatttg atccgaattt ctcggagatt gtttttacag atttctgcta cgccctttat
      121 ggcaaagccc atgacgctcg cggcggaggt aaagccaaac tcgacctctt ctcaccctac
      181 cttagtgaag aagctcgcgc ctcgttactg cagaggaaca gttcctcgct tcaggaagtg
      241 aagggaatca ttgtgggctc aatgaaggtc gagcagattc agggccttga aactcctttg
      301 gttagagtcg gccttctctt tgagagcaac tacacagaag tctctggcca gtcagaaatg
      361 agttactacg tcgtcgagcg ttggcagctt gagcgaaagc gcgatgtgct ttcacctaca
      421 cccgcccagg ctacggcgtt gcactgtcca cgttgcggcg ccccgctgca gcacgacacc
      481 gttggagcgt gtgcgttctg tggaaccaag atcgatagcg gtgagtttca gtggtacgtc
      541 cgtagtatca atctagtcag taaagaagcg cgcggtccgc aactcacctc cagcgttgag
      601 gaagttggta cagactatcc gagtgttgtg caaacaaact ttgacgcgat caaagtggac
      661 ttcgaaagaa acaacccgga gttcaacggc gaacagtttc aggaacgagc tcgtctcatt
      721 ttcaatgaat tacaagccgc ctggtcaaca atgaactggg aaagagctcg gccacatgaa
      781 acggataatc ttttccagat gcatcagtac tggattgaag cttaccggcg tcagaaactt
      841 cggaatgtta tcgacaactg cgaaataaca gcgatggagc cggtcaagat tcaggaagac
      901 gctttctatc aaggcataac actgagaatt tgggcgcacg ggctcgatta cacggtcgac
      961 tcaaacggca agatcgtgtc gggttcgaat caggagttgc gagagtggag tgagtactgg
     1021 acatttatcc gcagcaaaca ggcgaaatcc ggaaaaaccc acacagattt gaattgtccg
     1081 aattgcggct cgcctttaaa ggttaacgcc acc
//
LOCUS       DATCGC010001072         2624 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_84129, whole genome shotgun sequence.
ACCESSION   DATCGC010001072 DATCGC010000000
VERSION     DATCGC010001072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2624
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84129"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(34..1893)
                     /locus_tag="VIJ87_10405"
     CDS             complement(34..1893)
                     /locus_tag="VIJ87_10405"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY5444861.1"
                     /translation="MSTVTKPTKKRITPAAAWQDARELIWQHRYRLALGMLLMIINRL
                     VGLVLPTTSKYLIDDVVLKHRGELLVPLAVAAGAATLIQAVTSFLLSQILGVAAQRAI
                     TEMRKSVQEHIERLPIRYFDSTQTGVLISRIMSDAEGIRNLVGSGLVQLVGGLVTAVL
                     ALTVLFYLNWRLTSVIIIALAAFGGAMATAFKRLRPLFRERGQINAEVTGRLTESLGG
                     IRIVKAYAAEKREELVFARGAHRLFRNVRRSMTGVSAVTSFSTLIVGLIGVLLTLVGG
                     RDILAGSMTLGDFFMYIFFTALVAAPLVEIASIGTQITEAFAGLDRIREIKRMATEDE
                     EDETREALGGIRGEIEFGDVSFEYNDDTPVLKNVSFKAPAGSTTALVGSSGSGKSTLI
                     SLVMAFNRPLAGTVRVDGRDLESIRLKDYRHELGVVLQDNFLFDGTIAANIGFSHPHA
                     TREEIIAASRVAHCEEFINGFADGYDTIVGERGVKLSGGQRQRVAIARAILAEPKILI
                     LDEATSSLDSESEAMIQDGLQTLRRGRTTFVIAHRLSTIRSADQILVLEEGEIVERGT
                     HEELLAKAGRYKQLYDKQYRFEKNQFINPGEDFTPEPPKVTAERRENSSMPNL"
     gene            2046..2378
                     /locus_tag="VIJ87_10410"
     CDS             2046..2378
                     /locus_tag="VIJ87_10410"
                     /inference="COORDINATES: protein motif:HMM:TIGR03433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEY5444862.1"
                     /translation="MRTTRTDLMQGTLELLILKTLSRKQMHGYGIAQQIHQAVDDLLK
                     VEDGSLYPALYRMEERGWISSEWGTSENNRRAKFYKLTKVGHRQLIAQSNNWERVSRA
                     VMRVLAAT"
     gene            2389..>2624
                     /locus_tag="VIJ87_10415"
     CDS             2389..>2624
                     /locus_tag="VIJ87_10415"
                     /inference="COORDINATES: protein motif:HMM:NF038403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease prefix domain 1-containing protein"
                     /protein_id="HEY5444863.1"
                     /translation="MKSLFDLVRRSKHSIADEVDEEFGFHLDMRAREYERRGVSSEKS
                     KAMAEARFGDVEKIRTECIQISSRKSVLIWLLNSV"
BASE COUNT          651 a          676 c          695 g          602 t
ORIGIN      
        1 cagttttgga agagtttctg aactctgtgc cacctagaga ttcggcatgc tcgaattctc
       61 gcgacgctcg gctgtaactt ttgggggctc tggagtgaag tcctcgccgg gattgatgaa
      121 ctggttcttc tcaaatcgat actgcttgtc gtagagctgt ttgtatcttc cggcctttgc
      181 cagcagctcc tcgtgagttc cgcgttctac gatttcgccc tcttccaaca ccagtatttg
      241 atctgcgctg cgaattgttg aaagccggtg agcgatcacg aaggtagttc gaccacgacg
      301 cagtgtttgc agcccatcct gaatcatcgc ttcactttcg ctatcaagac tggaagtcgc
      361 ttcatcaaga atcagaatct ttggttcagc aagaatcgcg cgggcaattg cgacccgctg
      421 acgttgaccc cctgacaatt tcacgccgcg ctcgccaaca atcgtgtcgt acccgtctgc
      481 gaaaccgttg atgaattctt cgcaatgggc cacccggctt gcggcaatta tttcttcacg
      541 agttgcgtgc ggatgcgaaa acccgatatt ggccgcgatt gtcccgtcaa acaggaaatt
      601 gtcctggagt acgacgccta attcgtgtcg atagtctttc aatcgaatcg attccaggtc
      661 gcgaccgtcg actctaacgg tgcccgcgag gggccgattg aaagccatta ccaaactaat
      721 cagagttgac ttacccgaac cgctcgaccc aaccaacgca gtcgttgacc ctgccggcgc
      781 cttaaaggaa acgttcttta gtactggagt gtcgtcgttg tattcaaaac tgacgtcgcc
      841 gaattcgatc tcgccacgga ttcctcccaa cgcttcacga gtttcgtctt cctcgtcttc
      901 ggtcgccatc cgtttgatct cacgaattcg atccagaccg gcaaaggctt cagtgatctg
      961 agtaccaata gaggcaatct cgacaagtgg tgcggcaact agtgcagtaa agaagatgta
     1021 cataaagaag tcgccgagcg tcatgctgcc ggcgagaatg tcgcgacctc ccacgagagt
     1081 taacaggaca ccgatgagac cgacgatgag ggtcgaaaac gaagtaactg ccgaaactcc
     1141 cgtcatcgaa cgtctaacgt tgcgaaacaa tctatgagcg ccgcgagcaa aaacgagttc
     1201 ctctcgtttc tcagctgcgt aggctttgac aatccggatg ccaccgagtg attccgtcag
     1261 gcggcccgtg acctcggcgt tgatttgtcc acgttcacgg aagagagggc gaagtctttt
     1321 gaaggcggta gccatggcgc caccgaaggc tgcgagagcg atgatgatga ccgacgtgag
     1381 tcgccagttg aggtagaaga gaacagttag agctaatacg gcagtgacga ggccgccaac
     1441 aagttgcacg agtccggacc cgacgagatt tcgaatgcct tccgcatcgg acatgatccg
     1501 cgagatcagc actccggttt gagttgagtc gaagtagcga atgggaagtc gttcgatgtg
     1561 ctcttgcaca ctcttgcgca tctcggtgat tgcccgttgg gcagccacac caaggatctg
     1621 tgataacaga aaagaggtga cagcctggat gagcgtcgcc gcacccgccg caaccgcaag
     1681 agggactaac aactcgccgc gatgtttcag cacgacgtcg tcaatcaggt acttggaggt
     1741 agtgggcagc accagaccaa ccaggcgatt gatgatcatc aagagcatgc ctaacgccag
     1801 acgataacgg tgttgccaga tgagttcgcg cgcatcctgc caggcggcag ccggcgtgat
     1861 tcgtttcttt gtgggtttgg taactgtgct catggtttcg ccacagatta cacagattat
     1921 gcagataaga acaaaccagc agtggtttca aatgaccaat gaccaatgat cccttctttc
     1981 ccttgacact ctggggaacg acaacctact cttcgcccta gactgtctag aggaagccat
     2041 ttcagatgag aaccactcga accgatctca tgcagggaac acttgagctc ttgattctca
     2101 agacactctc gcgcaaacaa atgcatgggt acggcattgc ccagcagatt caccaggcag
     2161 tggacgactt attaaaagtt gaggacggtt cgctttatcc ggcactctac cggatggaag
     2221 agcgaggctg gatcagttct gagtggggaa cttcagaaaa caatcgccgc gcgaaatttt
     2281 ataaactcac aaaagtcggg catcgacagc ttatcgcgca atccaacaat tgggagcgag
     2341 tctcacgggc agtgatgcga gtgttagcag caacctgaga ggtgtgtcat gaagagtctt
     2401 ttcgacttag ttcgacgaag caaacattca atcgcagatg aagtagacga ggagtttggt
     2461 tttcacctcg acatgcgtgc gagggagtac gaacgtcgag gcgtatcgtc tgagaaatct
     2521 aaagcgatgg ccgaagctcg attcggagat gtcgaaaaga ttcgaacgga atgcattcaa
     2581 ataagttcgc gcaagagtgt tttgatttgg ctgctaaata gcgt
//
LOCUS       DATCGC010001073         1045 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_114732, whole genome shotgun sequence.
ACCESSION   DATCGC010001073 DATCGC010000000
VERSION     DATCGC010001073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1045)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1045)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1045
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114732"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1045)
                     /locus_tag="VIJ87_10420"
     CDS             complement(<1..>1045)
                     /locus_tag="VIJ87_10420"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444864.1"
                     /translation="DDGLVQLSRDGGKNWTNVTPPASMMPEWIQINSLEASPNDPATA
                     YVAATMYKYDDNHPYLYRTSDYGKTWKKITTGIPETTFTRVIREDPNKRGLLYAGTET
                     GIYISFNNGDNWQPMQFNLPITPITDLAIHKRDKELVAATQGRSFWIFDDLPLIHQMM
                     DAGGLKSAEENKLFQPKESYRMPGGGGFQIGPTGTVGANPPSGVVVYYSLKAKPTSDV
                     QLEFLDMAGKSIRKFTGRVARAGGGAASPQAGPPSDEGGFGGGGATVTTNVGLNRFIW
                     DARYADASRFPGMILWSGETRGPKIAPGKYQVKLTVEGAAQTQSFEVKADPRLTTTSA
                     DYAKQLELGLKIRD"
BASE COUNT          208 a          292 c          275 g          270 t
ORIGIN      
        1 gtcgcgaatc tttagtccca actcgagctg cttcgcataa tcagcagacg tcgttgttag
       61 tcgtgggtct gctttcactt cgaagctctg cgtctgagcc gcaccctcga cagtaagttt
      121 cacctggtac ttgccgggtg cgatcttagg tccacgtgtt tcaccagacc aaagaatcat
      181 cccgggaaaa cgcgaggcat ccgcgtaacg tgcatcccag atgaatcggt ttagtcctac
      241 gtttgtcgtg accgtcgcac cgcctccccc aaagccgcct tcgtccgaag gcggacctgc
      301 ctgcgggctc gccgctccgc cacctgcacg tgcgactcgc ccggtgaact ttcgtattga
      361 cttgcctgcc atatccagaa actccagttg gacatctgag gttggctttg ctttgagcga
      421 gtagtaaaca acaacaccgc tgggtggatt cgctccaaca gttccagtcg gtccaatttg
      481 aaatccaccg ccgccgggca tccgatagct ctcctttggt tgaaatagct tgttctcctc
      541 agccgacttc aatccgccag cgtccatcat ctgatggatg agcggaagat catcgaagat
      601 ccagaacgaa cgaccctggg ttgccgcaac taattccttg tcccgcttgt ggattgctaa
      661 atcagtgatc ggagtgatgg gcaagttgaa ttgcataggt tgccagttgt caccgttgtt
      721 aaatgagatg tagatgccag tctccgttcc cgcatagagc aatccgcgtt tgttaggatc
      781 ttcgcgaatt acacgagtga aagttgtctc cggaattccg gttgtgattt tcttccaggt
      841 cttgccgtag tcgctcgtgc gatagagata cgggtggttg tcgtcgtact tgtacatcgt
      901 cgccgcaacg tatgctgttg ccggatcgtt gggcgaagct tccagggaat tgatttggat
      961 ccactcgggc atcatgctgg ccgggggcgt gacgttcgtc cagttctttc caccgtcacg
     1021 cgacagctga actaagccgt cgtcg
//
LOCUS       DATCGC010001074         1149 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_114737, whole genome shotgun sequence.
ACCESSION   DATCGC010001074 DATCGC010000000
VERSION     DATCGC010001074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1149
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114737"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1149)
                     /locus_tag="VIJ87_10425"
     CDS             complement(<1..>1149)
                     /locus_tag="VIJ87_10425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444865.1"
                     /translation="GPYFALASVIVFAAALLLRSEHDAWALSLVGVAVFVVPVLALSD
                     RIVFDGISIQRRGPLFFFLQVFFGKTKQLAVSEFETVETNAVRTLRRRGAVRYRYRTQ
                     ISGKDKDFVIASGGESYRRLVRELFPLVHEDKLDNRSRDLRDYLCDPRVVSRKTQLSQ
                     LASEDVLDGAKTEYRVGGKPNNRQETGELQNTPQDLERAHLLRRLGNELRVAGRLREA
                     GEAFRRALNVTPRGAWLIYDFARLLRSQASAQADARLLLRARAALRLASIRADDDLVL
                     LPLIGESFLECGDARLARQTLQKAVELDNGNFKARLGLADLALREGKLAHVIHHYQEA
                     ARVTSEHALARYAMREGDYYMRLNNDDDYLATELRRINWLQHVTRVRR"
BASE COUNT          275 a          325 c          290 g          259 t
ORIGIN      
        1 gacgccgcac acgcgttacg tgttgcagcc aatttattct gcgcagttcc gtggcgagat
       61 aatcatcgtc gttgtttaga cgcatgtagt agtcgccttc gcgcattgca tagcgagcca
      121 gcgcatgctc cgaagtgact cgagcagcct cttgataatg atgaatcaca tgcgccaact
      181 tgccctcacg aagagcaaga tcggcgagtc ccaaacgagc tttgaagttg ccgttgtcga
      241 gttcaactgc cttctgcaat gtttgccgag ccaaacgagc atcgccgcat tcgaggaagc
      301 tttcgcctat caaaggtaac aagaccagat cgtcgtcggc tcgaattgat gccaagcgta
      361 gtgcagcccg agcccgtagc aacaacctgg catctgcctg tgcactcgcc tgggaacgaa
      421 gcaacctggc aaagtcataa atgagccacg caccgcgagg cgttacattc aacgcccgcc
      481 gaaacgcctc gccggcttcg cgtaatcgac ccgcgacgcg gagttcattt ccgagcctgc
      541 gaagtaaatg cgctcgctcg agatcttgcg gagtgttctg gagctcacct gtttcttgtc
      601 gattgtttgg cttgcctccg actctatact cagtcttcgc tccgtcgagt acgtcttccg
      661 aagccaattg cgagagttgg gtttttcgac tcacaaccct tgggtcgcac aaatagtcgc
      721 gcagatctct acttcggtta tcgagtttgt cttcgtgaac tagagggaac aactcgcgca
      781 ctaaccgtcg atacgactcg ccacctgacg cgatgacgaa gtctttatcc ttgccgctga
      841 tctgcgttcg atatctgtat ctaactgcac cccgacgtcg gagtgtacga acggcatttg
      901 tctcaactgt ctcaaattcc gaaacggcaa gttgctttgt cttaccgaag aagacttgca
      961 ggaaaaagaa aagtgggcct cgacgctgaa tcgatatgcc atcaaaaaca atccgatctg
     1021 acaaagccag gaccgggacg acaaacactg ctacgcccac caatgacaaa gcccatgcat
     1081 cgtgttcgct tctgagaagg agggctgcgg caaatacgat tacgctggcg agcgcgaaat
     1141 aagggcccg
//
LOCUS       DATCGC010001075         1759 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_214072, whole genome shotgun sequence.
ACCESSION   DATCGC010001075 DATCGC010000000
VERSION     DATCGC010001075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1759)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1759)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1759
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_214072"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..218)
                     /locus_tag="VIJ87_10430"
     CDS             complement(<1..218)
                     /locus_tag="VIJ87_10430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2281 domain-containing protein"
                     /protein_id="HEY5444866.1"
                     /translation="MAVNKYRIEEVFNQLPEELQEELLSFARFLLEGKSETKRNVDTP
                     RVASFLGSWDSGSSNSADNYRIDRDLTR"
     gene            complement(308..1612)
                     /locus_tag="VIJ87_10435"
     CDS             complement(308..1612)
                     /locus_tag="VIJ87_10435"
                     /inference="COORDINATES: protein motif:HMM:NF013158.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HEY5444867.1"
                     /translation="MTKKLFTWCVLIIASISGAASVFACSCMNPGPPCEATSKSAAVF
                     VGTVVSSKNAKTTGQYDFNSREVKLSVEESFKGLGSTEALVFTGWGGGDCGYPFRTGQ
                     QYLVYAYKDEKDGRLATGICSRTRQLSEAKEDLAYLRGLSQASSGSMILGDVMRFKRD
                     EDGNGSSEPMPSIKIIVTGDDKKLEVESDAKGHFSISGLKPGAYNVSIDLPPGMTASK
                     NDYSVNLEDKACEFLYFGVESNGRLTGQVKNMLGVPIEKAEIFIIPANKPRYRGWWDS
                     AYTEKDGIYSFKRIPPGKYKLQIRFDGLTSQTRPFPNMYHPGVLDTTQATVIEIGDGQ
                     EIKDYNVIVPELPRDRTIEGTVVTSDGTLITDAKVSYFVEPVVYAATMDSPGHFKLNV
                     YEGVSTAVQAHVERNGKQVQSGSVTIPATGDVEKIKLVIPVQ"
BASE COUNT          455 a          480 c          375 g          449 t
ORIGIN      
        1 tcgcgagtga gatcacgatc tatccggtaa ttatcggctg agtttgaact gccactatcc
       61 cacgacccca aaaaagaagc gactcttggc gtgtccacgt tccgcttagt ttccgacttc
      121 ccttccaaga ggaatctggc aaacgataac agttcctcct gaagctcttc tggtagctga
      181 ttgaaaactt cttctatcct gtacttgtta actgccatcg atcaaacaat acacccgtca
      241 cccttagtca tgaaagcagc gagccaagtt acgaaaaagt ttggtcgcat cgccaaatat
      301 gaggactcta ctgcacagga ataactagct ttattttctc gacatctccc gttgcaggaa
      361 tcgtaaccga accactttgc acttgcttac cgtttcgttc gacgtgagct tgcacggccg
      421 tgctgactcc ttcgtagacg ttcaacttga aatgtcccgg cgaatccatc gtcgccgcat
      481 acacaaccgg ctccacgaag taggatacct tggcatctgt gattagcgtt ccatcggagg
      541 tgactacggt accctcgata gtccgatctc ttggcagttc aggtacgatg acgttgtagt
      601 ctttaatctc ctgtccgtcg ccgatctcga ttactgtggc ctgagtcgta tccaaaacgc
      661 ctggatgata catgttcgga aacggacgag tctgactcgt taacccatcg aatctgatct
      721 gaagcttata cttacctggc ggaatgcgct tgaaagagta aatgccgtcc ttctcagtgt
      781 aagctgagtc ccaccaaccc ctataccttg gcttattcgc cgggataatg aaaatctcag
      841 ccttctcaat tggtactccc agcatattct ttacttgacc tgtcaaacgt ccattcgact
      901 caactccaaa gtagagaaac tcacaagctt tgtcttccag attaactgaa taatcatttt
      961 tgctcgcagt catacctgga ggtaggtcta tcgaaacatt ataggcaccc ggcttcagcc
     1021 ccgagatgct gaaatgtcct ttcgcatcag attcaacttc aagcttcttg tcatcgccag
     1081 taacaatgat tttgatgctg ggcatcggtt ccgatgaacc attcccatct tcatcccgtt
     1141 taaaacgcat tacatcgcca aggatcattg accctgacga tgcttgcgaa agccctctca
     1201 ggtaagccaa gtcttccttc gcttctgata actgacgagt acgcgagcaa atgccggtag
     1261 caagacgccc gtctttttca tccttgtatg cgtaaactaa atactgttgt cctgtacgaa
     1321 acgggtagcc acagtcgcca cctccccaac ccgtgaacac caacgcttca gtcgagccca
     1381 aacccttaaa tgattcttca accgataatt tgacttcgcg ggaattgaaa tcgtattgcc
     1441 cggtagtctt agcgttcttg ctcgatacta ctgtgcccac aaaaacagct gcggacttag
     1501 aggtcgcttc gcaaggcggg ccggggttca tgcaactgca ggcgaacaca ctcgcggctc
     1561 cgctgattga agcaataatc agaacgcacc aggtgaaaag tttctttgtc ataactcaca
     1621 ctcacgcaaa gacaacataa acgtgggaaa ggtccgtcga aacgtggtcg tattagccat
     1681 cgccccagtt ggagcgcgac tcagatgtac aaagaagatc cgggcaacaa ctattgagaa
     1741 gccggtgaga acaaccagg
//
LOCUS       DATCGC010001076         1493 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_49863, whole genome shotgun sequence.
ACCESSION   DATCGC010001076 DATCGC010000000
VERSION     DATCGC010001076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1493)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1493)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1493
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49863"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            397..987
                     /locus_tag="VIJ87_10440"
     CDS             397..987
                     /locus_tag="VIJ87_10440"
                     /inference="COORDINATES: protein motif:HMM:NF015142.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004721 - phosphoprotein phosphatase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein phosphatase"
                     /protein_id="HEY5444868.1"
                     /translation="MSVLRKFPIATMALMLALSVVTFGKTNNKSSFPNIKIDNFGQMD
                     ERFYRGGRPKPEELKNLAALGINTIIDLTDNSREREQPAVEAAGMRYINIPIVDKTNP
                     SMEQVNQFLKVANDPATGKFYVHCAGGRHRTGVMGALYRFNHDHWNYDQVYAEMKQYD
                     FYTSNGHGKQLDFVQDYWQQFQAKQGARSASATAGH"
     gene            complement(1067..>1493)
                     /locus_tag="VIJ87_10445"
     CDS             complement(1067..>1493)
                     /locus_tag="VIJ87_10445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444869.1"
                     /translation="PDRFPFLFRREKIQIQKLDIFLKIKNEFLDDYQSEDALALDITP
                     PGPPPIPKEVPTPVPTPVPTLVSNKSELSGLPHAEKDFVNVFDKARDLGKWSLVIKED
                     DIKKIAASLQITTAAGTVNHARLKRSAIEDLFIAFRYSI"
BASE COUNT          398 a          348 c          371 g          376 t
ORIGIN      
        1 aggagtttcg cgccgccatc actgcaggcg aagaggtgac tctcgcgcga aaactgctac
       61 agagcgtaaa acaaatgcgg gggtaggctg aaacgatctg agcgcggtta acctgtgggt
      121 gatgacggta cagtcctcga cagcggcact ctgaacccac ctgccagtat tcctaaaaca
      181 gcaattgagc gacgcaaatc gtgtaagaat tttgcgcaac tttcgttgca atctctgaat
      241 cttatagacg gtttctttgc tacgaattgt gcttgaaacc cgtgttaatc ctttttcccc
      301 gtcgaatcgg ataatcgagt aatcactgat ttatttgaat gaatggctga ggagcccgac
      361 cgtatcaacg tgtttgacta tttgaggaga tttaagatga gcgtactaag aaagtttcca
      421 atcgcaacga tggctctgat gctggcactt tccgttgtta catttggcaa gacaaataat
      481 aagagtagct tccccaatat caagatcgac aattttggcc aaatggacga acggttttac
      541 cgtggcggcc gaccaaaacc ggaggagctt aagaatcttg cggcgttggg tatcaatacc
      601 attattgatc taaccgataa ctcaagggag cgggaacagc ctgcagttga ggctgctggc
      661 atgcgttaca ttaatatccc gatcgttgac aagacaaatc caagcatgga acaggtaaat
      721 cagttcttga aggttgcgaa cgacccagcc accggaaagt tctacgtgca ttgcgcgggc
      781 ggacgtcatc gcacgggagt gatgggtgcg ctttatcgtt tcaatcacga tcactggaac
      841 tatgatcagg tatatgcgga aatgaagcag tacgacttct acaccagcaa cggtcacgga
      901 aaacaactcg acttcgttca agactactgg caacagttcc aggccaaaca aggcgcccgc
      961 tctgcttcgg caactgcagg acactaaact tgagtagcag tttcactgaa agagccgcct
     1021 tttcgaggcg gctcttttta agtgcgctgc cataacaatg ggcggctcag attgaatacc
     1081 taaacgctat aaacagatct tcaatcgcgg atcgtttaag acgtgcatgg ttaacagttc
     1141 cagccgcagt cgtgatctgt aacgaagcag cgatcttctt gatgtcatcc tcttttatta
     1201 caagtgacca tttgccgaga tctcttgcct tgtcgaaaac gttgacgaag tccttctcag
     1261 catgcggtaa gccgctcaac tccgacttat tactaaccag tgtcgggact ggtgtgggga
     1321 ccggtgtggg tacctcctta ggaattggag gaggtcctgg cggcgttata tctagcgcaa
     1381 gagcatcctc gctctggtaa tcatcaagga attcgttttt gatcttcagg aagatgtcca
     1441 acttctgaat ttggatcttc tccctgcgaa aaagaaatgg aaaccgatct ggt
//
LOCUS       DATCGC010001077         1097 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_282283, whole genome shotgun sequence.
ACCESSION   DATCGC010001077 DATCGC010000000
VERSION     DATCGC010001077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1097
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_282283"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(87..824)
                     /locus_tag="VIJ87_10450"
     CDS             complement(87..824)
                     /locus_tag="VIJ87_10450"
                     /inference="COORDINATES: protein motif:HMM:NF012720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 3 family protein"
                     /protein_id="HEY5444870.1"
                     /translation="MSHAATETHSHPALQHHFENMEQQREAGTLGMWVFLVTEIMFFG
                     GMFLAYTLYRSEHGAAFASASNHLDITLGAVNTGVLILSSFTMAMAVYFTQIGKSRPQ
                     IFSLILTIILGLTFLGIKAVEYRAKYNDSLIPGHLIPSRPFGPAVAEHGDEDPHKLHL
                     LPGATVKQVELFYWIYFAMTGMHALHMIIGAGLLTFLLIFSIKGRFGPEYHSPVEVIG
                     LYWHFVDIVWIFLFPLLYLLGRHFEHG"
BASE COUNT          286 a          291 c          282 g          238 t
ORIGIN      
        1 aacgcggtgc cgaccaagag caccaggaaa atcgtaatgt aaactcgaac tggaactata
       61 tgttcactca tcgcaccaac ccaggtctat ccgtgctcga aatgccggcc caacaagtac
      121 agtaacggaa agagaaaaat ccaaacgatg tcgacgaagt gccagtaaag cccgatcacc
      181 tcaaccgggc tgtgatactc cggcccgaac cgacctttga tcgagaagat cagaaggaac
      241 gtcagcaaac ccgcaccgat gatcatgtgt aacgcgtgca tgccggtcat cgcgaagtag
      301 atccaataga agagctctac ttgtttcaca gtcgcaccgg gtaacaagtg gagcttgtgt
      361 ggatcttcat caccgtgctc tgcgaccgcg ggcccgaacg gtcgggacgg aatcaaatga
      421 ccggggatca ggctgtcgtt atatttcgcg cgatactcga cagccttaat gccaaggaac
      481 gtcagtccca gaattatcgt cagaataaga ctgaaaatct gaggtcgcga tttaccgatc
      541 tgcgtgaagt aaaccgccat tgccatcgta aagctgctca ggatcaggac cccggtattg
      601 acggcgccga gtgtgatatc gaggtggtta ctggcgctgg caaaggccgc gccgtgctct
      661 gaacggtaaa gcgtgtaggc cagaaacatc ccgccgaaga acatgatttc ggtcaccaga
      721 aacacccaca tgccgagcgt tccagcctca cgctgctgct ccatgttttc aaaatggtgc
      781 tgcagtgcag ggtgactgtg tgtttctgtt gcggcgtgac tcatgattaa tgtccgataa
      841 actttagttt gtcgttgctc aagaacggcc acagattgca caaatgaaac agatcagcgt
      901 ttttggctct atccgagtaa tctgttctta tctgtggcga accgtcatgc ccttaaacca
      961 attctccggc aaactttcca acaatctccg tctctgatgg cggagcaaac tcgtaagctt
     1021 cccaggtcac gatcggcgtg gtgtcgaagt tttcagttaa cggcggcgac tgcgtacgcc
     1081 actcgagacc gggcaag
//
LOCUS       DATCGC010001078         1009 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_182345, whole genome shotgun sequence.
ACCESSION   DATCGC010001078 DATCGC010000000
VERSION     DATCGC010001078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1009
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_182345"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(75..>1009)
                     /locus_tag="VIJ87_10455"
     CDS             complement(75..>1009)
                     /locus_tag="VIJ87_10455"
                     /inference="COORDINATES: protein motif:HMM:NF019042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="porin"
                     /protein_id="HEY5444871.1"
                     /translation="DFKMEGDFENSDGINNNRTAFEATDIFINWHQYPWAQIKMGQWK
                     APFGLEQLTPDTTLYTIERTLPTGAITPERQVGIQLWGKPFATIWPNQADLLTYYAGI
                     FNGNGRNISNNDNNNFMFVGRLESTLVKDVFGKGSFFKVGADVLNSRDDQGTNISQAL
                     TLLVNPDGSLSPFVLPGPDERTAWSVDAWLRMGPFDLIAEFLQEHVNPRTVNGVAPGF
                     DQFTTDGFYVTGAYYLIPKKLQAVVQWQHLNPGQKGNDGISSIVGGLNYYIRGDDLKL
                     MVNYFHTWSDFRDANPEFGDDQFDEVIGRMQLMF"
BASE COUNT          242 a          256 c          250 g          261 t
ORIGIN      
        1 atcgaatgtt ccgaggatat gctttggtgt aaccactatt atttataccg tggctactaa
       61 cataacagaa cggcttagaa cattagctgc atacgtccga ttacttcgtc gaactgatcg
      121 tcgccaaact caggattggc gtcgcggaaa tccgaccacg tatgaaagta attgaccatc
      181 agtttgagat cgtcgccgcg aatgtagtaa ttgaggccgc caacgattga tgagataccg
      241 tcgttcccct tttggcccgg atttaagtgc tgccactgaa caacagcctg cagctttttc
      301 ggaatcaagt aataagcgcc ggtaacatag aatccgtccg tcgtgaattg gtcaaagccc
      361 ggagccactc cgtttacggt acgcgggtta acgtgttctt gaaggaattc ggcgatcaaa
      421 tcaaagggac ccatcctgag ccatgcgtcg acgctccatg cagttcgctc atcgggcccg
      481 ggtagaacga atggtgaaag ggagccgtca gggttaacca gtagagtcaa cgcttgtgag
      541 atattcgttc cctgatcatc gcggctgttc agaacgtcgg cgccaacctt gaaaaaggaa
      601 ccctttccga aaacatcctt cactagcgtc gactccagcc tgcccacaaa catgaagttg
      661 ttattgtcat tattgctaat gttacgcccg tttccgttga agatgccagc atagtaggtc
      721 agcaggtccg cttggttagg ccagattgtc gcgaacggtt ttccccaaag ctgaattcca
      781 acctgtcgtt cgggtgtgat cgcgcccgtt ggaagagtcc gctcgatcgt gtatagagtc
      841 gtgtccggcg tcagttgctc caaaccgaat ggcgctttcc attggcccat cttgatctgc
      901 gcccagggat attgatgcca gttgatgaaa atatccgtgg cctcgaacgc ggttcgattg
      961 ttattaattc cgtcgctatt ctcaaaatcg ccttccattt tgaagtcga
//
LOCUS       DATCGC010001079         1408 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_317600, whole genome shotgun sequence.
ACCESSION   DATCGC010001079 DATCGC010000000
VERSION     DATCGC010001079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1408)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1408)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1408
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_317600"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            151..645
                     /locus_tag="VIJ87_10460"
     CDS             151..645
                     /locus_tag="VIJ87_10460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444872.1"
                     /translation="MTRNGKIALGCGGAGCLGLIVVVIAGGVLYFLWSKPTSGRSYNF
                     NVSNINRNSNSGPSSNLNANSNSTSDSNSTSDSNSSSSSSSLSDDEKHKLYQAASMTE
                     DAEMLRRVSVKLGIMNEDFTPGDDFLVFVKDHGIWAIRNTEFIQSLDSKEKAVDYVNK
                     HFPE"
     gene            715..>1408
                     /locus_tag="VIJ87_10465"
     CDS             715..>1408
                     /locus_tag="VIJ87_10465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016291381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEY5444873.1"
                     /translation="MDPSRIRNFSIIAHIDHGKSTLADRLLQLTGAVAERDMENQVLD
                     NMDLERERGITIKSHAVRLDYKAQDGVDYILNLIDTPGHVDFTYEVSRSLSACEGALL
                     IVDASQGVEAQTLANTYLALDNNLELIPVINKIDLPGAEPEKAIEQIEHFIGLETHNA
                     IFTSAKTGEGVAEVLEAIVRDVPSPKGNSDSPLKALIFDSWYDSYRGVIVLFRVIDGN
                     IKTGMKIRFFNTG"
BASE COUNT          380 a          330 c          362 g          336 t
ORIGIN      
        1 gcttatgatt ttgagtgggt gttgccgggt cacggagata tgcataacga cagcgcgcca
       61 aaaatgagag agcatttgga gcgctgtatt gcttggatga aaacgcgaaa ctaaaaagtt
      121 ctccgatcaa atgtcgagaa gaggaaaacg atgactagga atggaaaaat agctctcgga
      181 tgtggtggcg ctggatgtct tggattgatc gtagtcgtga ttgcgggagg tgtgctctat
      241 tttttgtgga gcaagcccac ttcgggtcgc agctacaatt tcaacgttag caatatcaac
      301 cggaattcaa actcgggccc gagctcaaac ttaaacgcca acagcaattc aacgagcgac
      361 agcaattcaa cgagcgacag taattcttcg tcttcatcga gttcgctttc agatgacgaa
      421 aagcacaagc tctatcaagc cgcgagcatg accgaagacg ctgagatgct gcgtcgtgtt
      481 tccgtaaaac tcggaataat gaatgaagac ttcacccccg gtgacgactt cctggtcttt
      541 gttaaggatc acggtatttg ggccatccga aacaccgagt tcattcagtc gctggattca
      601 aaagaaaagg ctgtggatta cgtgaataag cattttccag agtgaggagg gcgaagagca
      661 aagttcaaag tccaagtcca aagtcccaag aaagaactca gttacgcttt caatatggat
      721 ccgtctcgca ttcgaaattt ttcaatcatt gcccacatcg atcacggcaa gtcgacgctt
      781 gctgaccgtt tacttcaact cacgggtgct gtcgcagagc gtgacatgga gaaccaggtc
      841 ctcgacaaca tggatctcga gcgtgaacgt ggtatcacga tcaagtccca cgccgtacga
      901 ctcgactaca aagcccagga tggcgtcgat tacatcctga atctgatcga tacgccaggc
      961 catgtcgact ttacttatga agtttctcgt tcgttgtcgg cgtgtgaagg cgctctgctg
     1021 atcgtagatg cttcgcaggg cgtcgaagct caaacactcg caaacaccta ccttgcactc
     1081 gacaacaatc ttgagcttat tccggtcata aacaagatcg acttgccggg tgcggaaccc
     1141 gaaaaggcaa ttgagcagat cgagcatttc atcgggctgg agactcacaa cgcaatcttc
     1201 accagcgcca aaactggcga aggagtcgct gaggtgttgg aggcgattgt gcgtgatgtg
     1261 ccgtcgccga aaggtaattc tgactcgccg ttgaaggcgt tgatatttga ttcatggtac
     1321 gactcatacc gcggcgtcat tgttttgttc cgcgttatcg acggcaacat aaagaccggc
     1381 atgaaaattc ggtttttcaa tacgggac
//
LOCUS       DATCGC010001080         1213 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_381835, whole genome shotgun sequence.
ACCESSION   DATCGC010001080 DATCGC010000000
VERSION     DATCGC010001080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1213)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1213)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1213
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_381835"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..945
                     /locus_tag="VIJ87_10470"
     CDS             <1..945
                     /locus_tag="VIJ87_10470"
                     /inference="COORDINATES: protein motif:HMM:NF024853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HEY5444874.1"
                     /translation="KNLEVIADIDGTIVTRADLDQSAGKPLSTAREQVYKLERQKLDE
                     YIGATLLTREAKRQSISVSTLMEREVDNKVAPITEDNIKSFYEENRTRLPVEFDKVHD
                     QIRDYLRDQKIENQKAAYIKALRSKATITTQLKAPPVYRSDVPFTGAPIRGAEKAPVT
                     IVKFEDFQCPFCKTAQPTFKDLLKKYDGKVRLVHKDLPLDAIHPLARQAAEAARCAGE
                     QGKFWEYHDQLYSVSPKLSSEDLKNSAKQVGLNTAVFDQCLASGKYRAVVQKDLNDGA
                     QLGLTGTPSFFINGREMSGALPLEAFSSVIDEELAQVR"
BASE COUNT          308 a          279 c          324 g          302 t
ORIGIN      
        1 aagaacttag aggtgatcgc cgacattgat ggaacaatcg ttactcgtgc agacctcgat
       61 cagtcagcag gaaaaccgct gtcgaccgca cgtgagcaag tttataaatt ggagcgccag
      121 aagctggatg agtacatagg agcaacactc cttactcgtg aggcgaaaag gcaaagcatt
      181 tccgtctcga cgttgatgga acgtgaggtt gacaataagg tcgctcctat cactgaggac
      241 aatataaaat ctttttacga agaaaacaga actcgcctac cggttgagtt tgacaaagtt
      301 cacgaccaaa tccgtgatta cctgcgtgac cagaagattg agaaccagaa agctgcttat
      361 atcaaagcac ttcgttccaa ggcgacgatt acaacccaac taaaagcgcc acccgtttac
      421 agatcggatg tgccgttcac cggcgcacct attcgtggcg cggaaaaagc accggtaacg
      481 atcgttaagt tcgaggattt tcaatgtccg ttctgcaaaa ctgcccagcc cacgtttaag
      541 gatttgttga agaagtacga cggcaaagtg cgtctagttc acaaagactt gccgttggat
      601 gcgattcacc cactggcgcg gcaggccgca gaggccgctc gatgtgcggg cgagcaggga
      661 aagttttggg agtatcacga tcaactttat tccgtctcgc cgaagttgag ctcggaggat
      721 ctgaagaatt ctgcgaaaca ggtcggcttg aacactgctg tgttcgatca gtgtttggcg
      781 agcggtaaat accgagcagt agtgcagaag gatttgaacg acggagctca gctagggctg
      841 accggaacgc cgtctttttt tatcaacgga cgtgagatgt cgggagcttt gccgttggag
      901 gcattttcgt cggtgattga tgaggagttg gcgcaagtca ggtagttttt ctgctcgaat
      961 tttgttgaat ttagctactc cgatcgtaat tttccgacgc cccgcttgcg taaatcctgc
     1021 ggaaacgatg agcttttttc cttaactgct agtcgtttct cgcttccagg gcccggcagc
     1081 gtatttttat tcagcagacc cggttaaatc agataatggc ttcactcgac agcctcgctt
     1141 gtacaagcgc gactctgcgg tgttggatga attggtgagg gcttattgag gtgaaaattt
     1201 cttgacccgc ctg
//
LOCUS       DATCGC010001081         2489 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_413405, whole genome shotgun sequence.
ACCESSION   DATCGC010001081 DATCGC010000000
VERSION     DATCGC010001081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2489)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2489)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2489
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_413405"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1640)
                     /locus_tag="VIJ87_10475"
     CDS             complement(<1..1640)
                     /locus_tag="VIJ87_10475"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HEY5444875.1"
                     /translation="MKTSVSNSESVYASRPWLDHYNFWVPAHVNYPRRPLHEILRLTA
                     SEIPDRPATAFFGKHLTFREVKEQADKFATALSRLGIRQGDRVGIMLPNCPQYIVATF
                     ALLRLGVTVVNVNPIYTPREVLVVAKDSEMCALLTLGVLAPVVLSVSEQTAIKGIIIT
                     SLEEYSAAATPTPALAGTLRMADLLAGVDEPDLPHVEINTDDDVAVLQYTGGTTGVPK
                     GAMLTHANIFANVVQTELWGNRDTRKGEDRYLLVIPFFHIYGFTVGMIEGVWRGVQQI
                     MIPKYDVEVVLTAIRDYCPTYFPAVPTIYISLLNHPKAKEYGIDKVRAFNSGSAPLPL
                     EVIDQFERMTGGTLNEGYGLSEASPVTHSTPSLGRRKPGSIGLPLSDTDMKIVDLETG
                     LSEVPVGEEGELCIAGPQIMKGYLNKPEETAIALRADEAGRRWLYTGDVARMDEDGYT
                     YIVQRKKDMIIVSGFNVYPSEVEGVLYTHEAVMEAAVIGVPDSYRGEAVKAFVVLKPG
                     ATATLEELTAHCETGLAEFKIPRHLEFRTSLPKTAVGK"
     gene            complement(1670..>2489)
                     /locus_tag="VIJ87_10480"
     CDS             complement(1670..>2489)
                     /locus_tag="VIJ87_10480"
                     /inference="COORDINATES: protein motif:HMM:NF006070.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY5444876.1"
                     /translation="LCRVTALTIHSINPVTAHIKQLFDLSGRIAIVTGGSRGLGKEMA
                     EGLAEAGASLMLCARREEWLWPTVEEFRGKGFKTEGMLCDVADSEQVQRLVDSTVVTY
                     GHVDILVNNAGVSWGELPEKMPIDKWHRVIETNLTGAFLVAQAAGREMLKRERGCIIN
                     IASVSGLQSSANGPHYVGYAASKAGMFGLTRELAASWGRQGIRVNAIAPGFFHSRLAD
                     QALAVAEPSIKARNPIPRVGDEGELKGVAVFLASDASSYITGQIIVVDGGRTIV"
BASE COUNT          561 a          687 c          641 g          600 t
ORIGIN      
        1 atcttcccta cagcggtctt gggcaaactg gtccgaaatt ccaaatggcg aggaatcttg
       61 aactcggcca gaccagtctc acaatgcgca gttagttctt ccagagtggc tgtcgctccg
      121 ggcttgagca ctacgaacgc cttaacagct tctcctcgat acgaatccgg cacgccaatc
      181 accgccgctt ccatcacagc ttcatgcgtg taaagcacac cttctacttc cgatggatac
      241 acgttgaatc cactaacgat gatcatgtcc ttcttgcgtt gcacgatgta ggtgtagcca
      301 tcttcatcca ttcgcgccac atcgcccgta tacagccaac gtcgtcccgc ttcatccgcc
      361 cgcagtgcga ttgcagtctc ttctggcttg ttcagatagc ctttcattat ttgcggtcca
      421 gcaatgcaaa gttcgccttc ctcaccaacc ggcacctcac tcagtccagt ttcaagatcc
      481 actatcttca tgtcggtgtc cgagagtggc agaccaatgc ttcccggttt acgacgaccg
      541 agcgaaggcg tcgagtgtgt cacaggagag gcttccgaca agccgtaacc ctcgttgagt
      601 gtgccaccag tcatgcgttc aaattgatcg atgacttcga gtgggagtgg cgccgagccg
      661 ctattgaagg ctcgcacttt gtcgatgccg tattcctttg ctttcgggtg atttagcagc
      721 gagatgtaga tggttggaac ggctggaaag taagttggac aatagtcgcg aattgcagtc
      781 agcacgacct cgacgtcgta cttcggtatc atgatctgtt gcactccacg ccagacacct
      841 tcaatcattc ctaccgtaaa tccatagatg tgaaagaagg gaatgacgag caagtagcga
      901 tcttcgcctt tcctggtatc acgattcccc cacaactcgg tctggacgac attcgcgaag
      961 atgttagcgt gcgtgagcat cgctcccttt gggacgccgg ttgttccacc cgtgtactgg
     1021 aggacagcga catcgtcgtc ggtgtttatc tcaacgtgag gaaggtcggg ctcgtcgacg
     1081 ccggcaagta aatcagccat tcgcaacgtt ccagccaacg caggtgttgg agtcgctgcc
     1141 gcagagtatt cttcaaggga agtgataatg attcccttga ttgccgtttg ttctgaaaca
     1201 ctgagcacaa ctggagcaag gactcctaat gtcagcagcg cacacatctc ggagtctttc
     1261 gcgacaacca gcacctcgcg aggcgtgtaa atgggattaa cgttaacgac cgtcacgccc
     1321 aatcgcagta aggcaaacgt ggccacgatg tactgcgggc agttcggcaa catgataccg
     1381 acgcgatcgc cctgcctgat gccgagtcga gacagtgctg tagcaaactt gtctgcttgt
     1441 tccttgacct cgcgaaacgt cagatgtttg ccgaagaaag ctgtagctgg acgatcagga
     1501 atttcagaag cagttagtcg gagaatctcg tgaagtggtc ggcgcggata gttcacgtgg
     1561 gccggcaccc agaaattgta gtgatcgagc cacggtctgg atgcgtagac tgattcgctg
     1621 ttacttacac ttgttttcac tttgctcatg agctgcggtg cagggatttt tagacgattg
     1681 tacgtccacc atcgacgact atgatttgac cggtaatgta gctggacgca tcagacgcaa
     1741 gaaacacggc gacacctttt agttcgcctt cgtcgccgac gcgcggaatc gggtttcgtg
     1801 ctttgatcga cggttccgct actgctaacg cctgatctgc taaccgtgaa tgaaagaatc
     1861 cgggagcaat ggcgttgact cgaataccct gtcgtcccca cgatgcggca agttcgcgcg
     1921 ttaagccaaa cattccggcc ttgcttgctg cgtaccccac atagtgcggt ccgttcgccg
     1981 aagactgcaa gcccgaaact gaggcgatat tgataatgca cccgcgctcg cgtttgagca
     2041 tttcacgacc agcggcctga gccacaagaa acgcgccggt caggttggtc tcaattactc
     2101 gatgccactt atcgatgggc atcttctcgg gaagttctcc ccaacttacg ccggcgttgt
     2161 ttaccaggat gtcgacatgg ccgtaagtca cgacggtgct gtcgacaagt ctttggacct
     2221 gttcagaatc tgcaacgtca caaagcattc cctcagtttt gaatccttta ccacgaaact
     2281 cttcaactgt gggccatagc cattcttcac gtcgagcgca cagcatgagt gaagctccag
     2341 cctcagccag accttccgcc atctctttgc ctaagccacg cgagccgccg gtgacaatcg
     2401 cgatgcgtcc ggaaagatcg aagagttgtt tgatatgagc tgtcacaggg ttgattgaat
     2461 gtatggtcag tgccgtaacg cggcagagt
//
LOCUS       DATCGC010001082         2357 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_182521, whole genome shotgun sequence.
ACCESSION   DATCGC010001082 DATCGC010000000
VERSION     DATCGC010001082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2357)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2357)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2357
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_182521"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            217..879
                     /locus_tag="VIJ87_10485"
     CDS             217..879
                     /locus_tag="VIJ87_10485"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY5444877.1"
                     /translation="MISLKNISKTFQTPAGPFMALKDINLKIRDGEFVGLIGKSGSGK
                     STLLNMIGGIDRPSSGAVEVGTTSVQDLKENKLAHWRGRTVGFVFQFFQLLPTLTAAE
                     NVMLPMDFCKTFPVRERRQRAVSLLERVGVGQQADKLPATLSGGEQQRVAIARALANE
                     PAVVLADEPTGNLDSVTAQAVFDLFREMATAGTTVVIATHEADITRVIDRTLEISDGA
                     LV"
     gene            888..>2357
                     /locus_tag="VIJ87_10490"
     CDS             888..>2357
                     /locus_tag="VIJ87_10490"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5444878.1"
                     /translation="MTSPVTKIFRDFWQERGRTGLVILAIALGIAAFASVMSSYAILT
                     RELDRGYLATNPASAVFFLDSIDDELIQTVLSDRSVSNAEPRRVVSGQIKSGPIQWRN
                     LVLFVVKDYGNVHVARLEHERGAWPPATGEILIERDAFQVAQASIGDLVTVKTSDGNE
                     QRLVISGSVHDVGQAQARMENVVYGYITLETLAQLGEQPYLDQLNILVAENRFDENHI
                     REVAARIQTLIQARGHEIRRVDIPKPGKHPHSEIMGVLLLSMSTFGLFVLALSGILVV
                     NLLTATMSSQVRQIGIMKAVGASHRQLLGIYLGQATLLGAAATIIALPAGLLGSRLLC
                     RYMAVFLNFDIKSFAVPLWVYALVALVGIITPLVAAMYPVWRGIRVPVRVAISDYNLS
                     PNSFGSAVIDRLLARLGGNYRPFLISLRNSFRRRARLALTLLTLSAGGVFFMSALNVR
                     ASMVNTLDQMFVTRKFDLSVIFASPQPIDKIERAIRSTSG"
BASE COUNT          544 a          603 c          629 g          581 t
ORIGIN      
        1 cgaacggttt ctcctgcatt agttcaacta gtgcatcgcc gagcgcgtcg cgtgttttgc
       61 gcacccgggc atcaagcttc tttttgaaat gcggtaccga tgatttcagt ttgtgcctgt
      121 taataatgga catcgtgact ctttctgttc aggtactagg agcgccgttg cactaaagct
      181 ggacagcttt ccgcggattg agcagattag ctcgccatga tctctctaaa aaatatctcc
      241 aagacgtttc agacgccagc cggaccattt atggcgttaa aggatatcaa tctaaaaatc
      301 cgggatgggg aattcgtcgg tcttatcggc aagtccggaa gcggaaaatc aaccttgcta
      361 aacatgattg gcgggattga tcgtccgtca tcaggagccg tcgaagtcgg caccacttcg
      421 gtacaggatc tgaaagaaaa taaacttgcg cactggcgcg gaagaactgt gggatttgtc
      481 tttcagtttt ttcagctcct ccctacgtta accgcagctg agaacgtgat gttgccgatg
      541 gatttctgca aaacgtttcc ggttcgcgaa cgacgacaac gcgcagtgag tctactcgag
      601 cgagtcggag tgggacagca ggccgataaa cttccggcga cgctatccgg cggagaacaa
      661 cagcgcgtcg caatcgcccg cgcacttgcg aacgaaccag cagtcgttct ggcggatgag
      721 ccaaccggta atctcgattc agttaccgcc caggctgtct tcgatctctt tcgagagatg
      781 gcgaccgccg gaacaactgt agtcatcgcc acacacgaag cagacataac acgtgtgatt
      841 gatcggaccc tggaaatttc agacggcgcg ttggtataga agaaactatg actagccccg
      901 tcactaaaat atttcgagac ttctggcaag aacgtggtcg cacaggcttg gtgattctcg
      961 cgatcgcttt gggaatcgct gcctttgcat ctgtgatgtc gtcttacgcc atcctcacac
     1021 gcgagctcga ccgtggctat ctcgccacca atccagcctc agcagttttc ttcctggact
     1081 cgattgacga tgaactaatc caaaccgtgc tcagtgatcg ctcggtcagc aacgctgaac
     1141 cgcgccgcgt ggtgagcggg cagatcaagt cgggaccgat acagtggcga aacctcgttc
     1201 tgtttgtagt aaaggattac ggcaatgttc acgttgccag gctcgaacac gagcgaggtg
     1261 catggccacc ggcgactggc gagatactga ttgagcgcga tgctttccag gttgcgcagg
     1321 ccagtatcgg tgacctggtg acggtcaaga ctagcgatgg aaacgaacaa cgactggtca
     1381 ttagcggcag tgttcacgat gtgggccagg cccaggcacg aatggaaaac gtggtctacg
     1441 gctacatcac gctcgagact ctggcacaac tcggagagca accgtatctc gaccaactca
     1501 atattctcgt ggcggagaat cggttcgatg agaaccacat tcgagaagtg gcagcgagaa
     1561 tccaaacact aatccaggct cgtggtcacg aaatccgacg tgttgatatt ccgaagccag
     1621 gcaaacatcc acactcagaa atcatgggtg ttctgttgct atcgatgtcc acctttgggc
     1681 tgtttgtgtt ggctctcagc gggattctcg tagtgaactt gttaactgcg accatgtcat
     1741 cgcaagttcg acagatcgga atcatgaagg cagtcggcgc ttcacaccgg caactcctgg
     1801 gaatctacct cggccaggca acgctgctcg gtgccgcagc tacaatcatt gcgctgccgg
     1861 caggcctgct tggcagccgg ctcctctgtc ggtacatggc ggtgtttctg aatttcgata
     1921 tcaaaagttt tgcagtgccg ctttgggttt atgcccttgt agctttagtt ggaatcatca
     1981 cgccactagt ggcggcaatg tatccggttt ggcgaggtat cagagtacca gtccgagttg
     2041 caatctcgga ttacaacctc tcgcccaaca gttttggttc tgctgtaatc gatcgactac
     2101 ttgcaaggtt gggtggaaac tatcgaccat tccttatttc tttgcggaat agttttcgac
     2161 gtcgagcgag gttggcacta actcttttga cgctttcggc tggtggtgtg tttttcatgt
     2221 cggctcttaa cgttcgggct tcgatggtta acacgctcga tcaaatgttc gtcaccagga
     2281 agtttgattt gagtgtcatc ttcgcgtcgc cgcaaccaat cgataagatc gaaagagcga
     2341 tacgcagtac ttcaggt
//
LOCUS       DATCGC010001083         1552 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_317715, whole genome shotgun sequence.
ACCESSION   DATCGC010001083 DATCGC010000000
VERSION     DATCGC010001083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1552)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1552)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1552
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_317715"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..281)
                     /locus_tag="VIJ87_10495"
     CDS             complement(<1..281)
                     /locus_tag="VIJ87_10495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444879.1"
                     /translation="MKKLVTNHDDKLKHIGHCTPELIADPIMTNPLRLHAGGHQLEYV
                     WLGPAPDQAPTIVFLHEGLGSVAMWRDFPQQVVETTGYGALVYSRAGYG"
     gene            complement(358..1434)
                     /locus_tag="VIJ87_10500"
     CDS             complement(358..1434)
                     /locus_tag="VIJ87_10500"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY5444880.1"
                     /translation="MHLLNGFLLLILLAITTNAVTPTNHFKIVKVANGVYAAIRTEPP
                     GLTVNANIVFIVNDDDVVVVDTTLTPGTARETIAALKQITNKPVRYVINTHWHDDHIM
                     GNQAYREAFPGVEFIAHQETRDYLPTTGLANRKGAMSEQGYPAFISALKNRLTKNESV
                     FGGPMDEEERNTYASGIEIAEEYMAENPGVEIVLPTTTVKDRLLLRRGRRTIDIRYFG
                     RGHTSGDLVVYLPKERIAITGDLVVWPVPYVGTPQSHPRDWSLALQQILGLHAKRFVP
                     GHGPVLTDDSQLKLMSRLFDSIDEQVRAAVNRGENLELVRNSVNLDSFRVILAGESRM
                     RKLIFRNYVVGPAVEAAYLDATAK"
BASE COUNT          344 a          387 c          407 g          414 t
ORIGIN      
        1 ttcccgtagc cggcgcgact ataaaccagg gctccatagc ctgttgtctc gacaacttgt
       61 tgtggaaagt cacgccacat cgcaacagac ccgaggcctt cgtgtagaaa gacgattgtc
      121 ggtgcttgat cgggcgctgg gcccagccat acgtattcga gttgatgtcc gccagcgtgt
      181 aagcgcaaag gatttgtcat tattgggtcc gcaataagtt ctggagtgca atgtccgata
      241 tgctttagct tgtcgtcgtg attggttacg agcttcttca atcgtcgctt gtgtcagaca
      301 gtgaggcgat aagctaaagc atatcggaca ttgcactaca aagaaggcgc actcatccta
      361 ctttgcagtt gcgtctaagt aggccgcttc caccgctggc ccaaccacat agtttctaaa
      421 gatcaacttt cgcattcgcg attcaccggc aaggatgact cgaaagctgt cgagattaac
      481 actgttccgc actagctcga ggttctctcc tcgattcacc gcagctctca cttgctcatc
      541 gatggaatcg aacaacctcg acattaattt caattgcgag tcgtcggtca agaccgggcc
      601 atgcccaggc acaaaacgtt tcgcatgcaa cccaagaatc tgttgtaacg ctaagctcca
      661 atcgcgcgga tgagattgcg gtgttcccac ataaggtaca ggccagacga ccaaatctcc
      721 cgttatggct atgcgttcct ttggcagata tacaacgagg tcaccgctgg tgtgaccacg
      781 accgaagtaa cgaatatcga ttgtacgccg acctctgcga agtaataatc gatccttcac
      841 ggtcgtcgtt ggcagcacaa tttcaacccc cggattctcc gccatgtatt cttcggcgat
      901 ctcgatcccg cttgcgtaag tattgcgttc ctcttcatcc atcgggccgc caaagacact
      961 ttcgtttttg gtcaaacgat ttttgagcgc actgatgaag gcaggatacc cttgttcgga
     1021 cattgcgcct ttgcgatttg cgagtcccgt ggtgggcagg tagtcgcgcg tttcctggtg
     1081 agcgatgaac tcgacgccag gaaatgcttc acgatacgct tggtttccca tgatgtggtc
     1141 gtcgtgccaa tgcgtgttga tgacgtatct cactggcttg ttggtgatct gtttgagtgc
     1201 tgcaatcgtc tcgcgagcgg tgccgggcgt tagcgtagtg tcgacaacca cgacgtcgtc
     1261 gtcgttaaca atgaacacta tgtttgcgtt gactgttagt ccaggtggtt cagtgcgaat
     1321 cgccgcgtag acgccgtttg cgactttaac gatcttgaag tggttggttg gtgtgacagc
     1381 gttggtggtg attgcgagga gaatcaataa aagaaaccca tttagtagat gcatgaattc
     1441 tccgggatcg gatgacgttt gcacgaactg tttctagtaa gaacgtttcg acgtctttgg
     1501 gagttcggaa gttgtcggct tgagtttata gccgcaaggt gccctttagt ag
//
LOCUS       DATCGC010001084         1605 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_449217, whole genome shotgun sequence.
ACCESSION   DATCGC010001084 DATCGC010000000
VERSION     DATCGC010001084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1605)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1605)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1605
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_449217"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..434
                     /locus_tag="VIJ87_10505"
     CDS             <1..434
                     /locus_tag="VIJ87_10505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444881.1"
                     /translation="GSMLVGVVQFNNKAGRPVPLDSLRLRLISQLSSAGVDAIALNAS
                     SQMEAEAEAKVKQCDFILYTDIAALKMNKIGGMLGGLTGGSMVPKTEAKLEFKLFAVG
                     ETAPRLQSNASAKEEGDENSAGTAVDAEARAVSTEVKKKRG"
     gene            complement(449..1000)
                     /locus_tag="VIJ87_10510"
     CDS             complement(449..1000)
                     /locus_tag="VIJ87_10510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444882.1"
                     /translation="MKTRIIAKFLLPVIFASVVIVQAATTQRDHLTPQEVDLVKEAQI
                     LDKRIEVFIKATDRRLMVLNGTQASNAKLLKKDAELWGELPSGSQAELIGDIARILDE
                     AITNIDDVSSRDERNPLIPKAMRRLAQAVNSIMTQVAPFKDKATTEAEVASLELLNED
                     AQQILEAAKKLPPEPEKKGKTKN"
     gene            complement(997..1485)
                     /locus_tag="VIJ87_10515"
     CDS             complement(997..1485)
                     /locus_tag="VIJ87_10515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444883.1"
                     /translation="MAPPPLQTIPKEERTQINGATDPKQRVRITIEFAGTHLTTAEKL
                     TTQSNYESASHEVGTYQAIVQNLLTFLASQKRDSNKTRDMYKRLELALRGDGPRLTAM
                     RRTTPLEFAVWIKQVEDFARESRTEALNSFYGHTVVREPDSLQKASEKPKESPTPQNQ
                     QP"
BASE COUNT          342 a          373 c          456 g          434 t
ORIGIN      
        1 ctggttcaat gttggttgga gtggtgcagt tcaataacaa ggctggtcgt ccagtgccat
       61 tggattcatt acgcttacgt ttgataagcc aactatccag cgctggagtc gacgcaatag
      121 ccttgaatgc gtcttcgcag atggaagctg aggctgaagc aaaggtgaaa cagtgtgact
      181 tcatcctgta caccgatatt gctgcactca agatgaataa gattggcgga atgcttggcg
      241 ggttaactgg cggatcaatg gtgccgaaga cggaagccaa gttggaattc aaactatttg
      301 cggttggcga aacagcacca cgactccaat caaacgcttc ggcgaaagaa gaaggtgacg
      361 aaaacagcgc gggcactgct gttgatgctg aagctcgagc ggttagtact gaagtaaaga
      421 agaaacgcgg gtagcgaaag cacgtacttt agttcttcgt ctttcctttt ttctcgggtt
      481 caggaggtag cttcttggct gcctccagta tctgttgcgc gtcttcgttg aggagttcga
      541 ggctggcgac ttctgcttca gttgtcgctt tatctttaaa gggcgcgact tgcgtcatga
      601 tgctgtttac agcctgagcg agtcgtcgca ttgcttttgg aattagtgga ttcctctcgt
      661 cgcgagagct gacatcgtcg atgttggtaa tagcctcgtc gagtatgcgg gcaatgtccc
      721 cgatcaactc cgcctgagaa ccactcggca attctcccca cagctcagca tctttcttca
      781 acagtttcgc gttcgacgcc tgagttccat tcaataccat taagcgtcga tctgtagcct
      841 tgatgaaaac ttcgattcgc ttgtcgagaa tctgcgcctc ctttacgaga tccacctctt
      901 gcggcgtcag gtgatcccgc tgggtagtag cggcttgaac gataacaact gaagcaaaga
      961 taacggggag taaaaacttg gcgatgattc gggttttcat ggctgttgat tctgcggagt
     1021 tgggctctct ttgggtttct cgctggcttt ctgaagggag tcaggctcgc gaacaaccgt
     1081 gtggccgtag aaagaattga gtgcttccgt tctgctctcg cgagcgaaat cctcgacttg
     1141 tttgatccag acggcaaact cgagcggcgt ggtccggcgc attgccgtca gtcgtgggcc
     1201 atcgccgcgc aatgcaagct cgagtcgctt gtacatatcg cgtgtcttat tgctatcgcg
     1261 cttttgggag gcaaggaatg tcaggaggtt ttgaactatt gcttgatatg ttccgacctc
     1321 gtgcgatgct gactcgtaat tgctttgggt cgtaagtttc tccgctgttg tcaggtgcgt
     1381 tcccgcaaac tcgattgtga tccgtactcg ttgttttgga tcggtggctc cgttgatctg
     1441 tgtgcgctcc tccttgggga tcgtctgcaa gggcggcgga gccatgaggg gtgttggctg
     1501 cggagtgggt tgtggttcct gagcgaaagc cgcgccagcg cacaagaata atagtgctga
     1561 aagaagaaca agtttacctg tgggttccac aaacattcag atcca
//
LOCUS       DATCGC010001085         1450 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_50124, whole genome shotgun sequence.
ACCESSION   DATCGC010001085 DATCGC010000000
VERSION     DATCGC010001085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1450)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1450)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1450
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50124"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(68..1078)
                     /locus_tag="VIJ87_10520"
     CDS             complement(68..1078)
                     /locus_tag="VIJ87_10520"
                     /inference="COORDINATES: protein motif:HMM:NF025032.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HEY5444884.1"
                     /translation="MKRFAIVFVCLLALSISAFGQTSESFDIATFQSPKGWNRQATQN
                     AAQFSTEDKTQGTYCVITLFKSLPGIGSAKDNFDAAWQTVVKTVVNPTAAPQMFPSDT
                     KEDWQVVGGFAPFEKDGEKGVAVLYTASGYGKMVNALVLTNTQAYEAAITAFLESISF
                     KKPAPEIQSQTPDNQNGSHPSLAGNFWKQAGIRGGMLGHAGLSTASFSKTYQFFSDNT
                     YKFFRVDMQLAAPKYYLENEEGTYSVTGNTITITPRKSSFSQHRLNKEDPPIKSGNLP
                     LSPAQYRFEFWLHDDNWALLLSPVDGNETKRDGTFSFWRNGEAQRTYQYVLVNAKGEL
                     IR"
BASE COUNT          351 a          349 c          342 g          408 t
ORIGIN      
        1 caatagaccg atagctgtaa agagaatgtg tttcataagt tcttccaggt atagataaga
       61 gcagttccta cctgatcaac tcgcctttcg cattgaccaa gacatactgg tacgttcgtt
      121 gggcttcgcc gttcctccag aagctgaatg tcccgtccct ttttgtttcg tttccgtcaa
      181 cgggcgaaag cagcaatgcc caattgtcgt catgcaacca aaactcaaat ctatattgcg
      241 ccggcgataa cggaagattg cctgacttta taggaggatc ttctttgttg agcctgtgtt
      301 ggctgaagct cgactttctt ggtgtgatcg tgatcgtgtt tcccgtgacg ctgtaagtac
      361 cttcttcatt ctccagatag tattttggag cagctagctg catatctact cggaagaatt
      421 tatatgtgtt gtcgctgaag aactgatagg tttttgaaaa actcgcggta gataaaccgg
      481 catggcccag catgcctccg cggattccag cctgcttcca aaaattcccg gcaagggaag
      541 ggtgagaacc gttctggtta tccggtgttt gcgattgtat ttcgggggca ggcttcttaa
      601 agctgattga ttccaagaac gcggtgatgg ctgcttcgta cgcctgtgtg tttgtgagga
      661 ccagcgcatt aaccatcttg ccgtaaccac tagcggtgta gagcaccgca accccttttt
      721 cgccgtcctt ctcaaatggt gcgaatccgc caaccacttg ccagtcctct ttagtgtccg
      781 aaggaaacat ctgcggcgcg gctgtaggat ttacgactgt cttaacgact gtttgccagg
      841 cggcatcgaa gttgtctttg gcgctgccga tgcccggaag tgatttgaac agcgttatca
      901 cacaataagt tccttgtgtt ttgtcttcag tagaaaactg ggccgcattc tgggtcgcct
      961 gcctgttcca gccctttgga gattgaaacg tagcaatatc gaagctttct gatgtttggc
     1021 caaaagcgct gatcgaaagg gctagaaggc agacgaacac tatagcgaat cgtttcatgg
     1081 tctagttgtc cgggttgatt aagattatcg aaggattgtg gaatcagtct cgaagaactt
     1141 agaaacgctt tctgaggaag taaaaatcct ggagccgaag gggggactcg atctaatcgc
     1201 tgcttctaaa ctattgctaa acaaggaact tcctcgcaag taattatcgc tcgagcacct
     1261 agaatttttc tgtttagtct ccctgattcc ctcacctctc tctggtgctc gccaataata
     1321 gacaccaaac agacaccaaa aatttcttga tcgtatcggt ccctcggacc aaatgtctga
     1381 accctaccgt gccaaggtag tgctctaccc ctggttaagt ctttcaaatc aacaagcact
     1441 aaatatccta
//
LOCUS       DATCGC010001086         1320 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_317737, whole genome shotgun sequence.
ACCESSION   DATCGC010001086 DATCGC010000000
VERSION     DATCGC010001086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1320
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_317737"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..619
                     /locus_tag="VIJ87_10525"
     CDS             <1..619
                     /locus_tag="VIJ87_10525"
                     /inference="COORDINATES: protein motif:HMM:NF042734.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY5444885.1"
                     /translation="PVAHGQLEAIIKEPRESPPKGVALVLHPHPLGGGTMHNKVVFRA
                     AAALNDAGLTTLRINFRGVGQSTGAHDFGNGELDDAKAGLSYLAAHYPGQAVTVCGFS
                     FGARMGMEVGINDERVKLLISIGTPLDKYDFSFLEQCRKPLLFVHGENDEFGDTHEVR
                     SLAERLGQTIPVKFVVIPGTGHFFEGHLDELKSAIYDWVTAQLER"
     gene            complement(608..853)
                     /locus_tag="VIJ87_10530"
     CDS             complement(608..853)
                     /locus_tag="VIJ87_10530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444886.1"
                     /translation="MITFILIYNSVCLISLIQETQTDFNDLGKLLLGGVAAAILFAVG
                     FTFVRLRLREKNPRPSDFISISATREKTEEVGGRSTL"
     gene            1135..>1320
                     /locus_tag="VIJ87_10535"
     CDS             1135..>1320
                     /locus_tag="VIJ87_10535"
                     /inference="COORDINATES: protein motif:HMM:NF015048.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hotdog domain-containing protein"
                     /protein_id="HEY5444887.1"
                     /translation="MNDYTDPAIRITLLPRDTNSRGTIFGGVILSYIDTAGAIQAHRH
                     TKMERFVTVAMREVIFHK"
BASE COUNT          328 a          338 c          359 g          295 t
ORIGIN      
        1 tccggtagcg cacgggcagc ttgaggccat catcaaagaa cccagggagt cgccgccgaa
       61 aggtgtcgct ctcgttcttc atccccatcc tctcggcggt ggaacgatgc acaacaaggt
      121 agtgtttcga gcagccgcgg cgttgaatga cgccggcctc acgaccttgc gaatcaattt
      181 tcgtggcgtc ggtcaaagta ccggcgcaca cgattttggt aacggagagc tcgacgacgc
      241 caaagcggga ttgtcgtacc tcgccgccca ctatccgggt caggccgtaa cagtgtgtgg
      301 cttctcgttt ggcgcccgga tgggaatgga agtcggcatc aacgacgagc gtgtcaagct
      361 tctgatcagc attggcacac cgctagacaa gtacgatttt agttttctcg agcagtgtcg
      421 caagccgctg ttgtttgttc atggcgaaaa tgatgagttc ggtgacacgc acgaagtacg
      481 ttcgctcgca gaacggctcg gacaaactat accggtcaag ttcgttgtga ttcctggtac
      541 gggccacttc tttgaaggcc atttggacga actcaagtcc gcaatctacg actgggttac
      601 cgcgcagtta gagcgttgat ctcccgccca cttcttcagt cttctcacgt gtcgcactaa
      661 tgctgataaa gtctgacggc cgaggattct tctccctcaa gcgtaggcga acgaaggtga
      721 agccaactgc aaacaagatt gccgcggcca ctccgcccag cagaagctta ccgagatcgt
      781 tgaagtcagt ttgagtttct tgaatgaggc taatcaggca aacagagttg tagataagaa
      841 tgaacgtaat catccaatca cgacctttca gtgtgaaccg taacaacgcg ggaaggagac
      901 gactatgtta gacaccgaag tgttcgggag gttccatgat gtccgatatg cgtctgtctt
      961 gccgtgactg ggaaattcag ctggagatcg tcgcaggtga cgggttaggg attgaataag
     1021 ctgggaaggt ggtcagctga atagtgagcc actaacacgt cgacgaatct gcggcaattg
     1081 ttcccagtta cgacaagctg aagcatatcg gacacaggat gtagaataac cggcatgaac
     1141 gattacacag atcccgcgat tcgcatcacg ttactgccac gcgacacaaa ctcacgagga
     1201 acaattttcg gtggcgtcat tctcagctac atcgacacag caggtgctat tcaagctcac
     1261 cgccacacga agatggaacg attcgtaacc gtggccatga gagaggtcat ctttcataag
//
LOCUS       DATCGC010001087         1817 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_50156, whole genome shotgun sequence.
ACCESSION   DATCGC010001087 DATCGC010000000
VERSION     DATCGC010001087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1817)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1817)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1817
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50156"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..429
                     /locus_tag="VIJ87_10540"
     CDS             <1..429
                     /locus_tag="VIJ87_10540"
                     /inference="COORDINATES: protein motif:HMM:NF013237.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019346 - transsulfuration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HEY5444888.1"
                     /translation="VVRGTKTLALRMEQHDKSGRAVAAFLEEHPKVNKVYYPGSASHP
                     QHSLARRQQRGFGGMVAFDVGSFANARTVLESVKLCTLAESLGGVETLISHPATMTHA
                     SVDADKRERLGITDGLVRISVGIEDTDDIIADIEQALDKI"
     gene            572..1501
                     /locus_tag="VIJ87_10545"
     CDS             572..1501
                     /locus_tag="VIJ87_10545"
                     /inference="COORDINATES: protein motif:HMM:NF025053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein phosphatase 2C domain-containing
                     protein"
                     /protein_id="HEY5444889.1"
                     /translation="MIVELYAKSDVGRVRRGNEDNFLVLDLSTEQTWTGTDGTNAPDK
                     LRRFDLGTKGLVLVVSDGMGGALAGDVASRMAVDSVREMLVGAGGEEPCDPSIDLVEC
                     LKNATVYANLAIHLRSQEDSRCAGMGATFTGAAVKGNSLDLVQVGDSRGYVIRRGQIR
                     LATKDQSLVQQLVDVGQISESEAETHMFRNVILQALGAQSEISPVTGKIRLRQGDAVL
                     LCSDGLSGKLRAEDIQHIVANSDGDLVKACDGLVEEANNRGGEDNITVVLARFLGDDL
                     EEPSNDRITIELPPLEEDKTLDDTYEADTEPRI"
     gene            complement(1595..>1817)
                     /locus_tag="VIJ87_10550"
     CDS             complement(1595..>1817)
                     /locus_tag="VIJ87_10550"
                     /inference="COORDINATES: protein motif:HMM:NF014062.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HEY5444890.1"
                     /translation="VDALPGKIGTVVSSSRGALQEGAVKVFGSTWTAYPAPGEPPLEA
                     GERVCVESIEGASIYVKRIEGERDWRGRE"
BASE COUNT          460 a          462 c          472 g          423 t
ORIGIN      
        1 gtggtgcgcg gaacaaaaac gctggcgctg cgaatggaac agcatgacaa atcgggacgt
       61 gctgtggctg cttttctgga agaacaccct aaagtgaata aggtctacta tccagggtca
      121 gcgtcacatc cgcagcattc attggcccgc agacaacaac gcggatttgg tggaatggtc
      181 gcttttgatg ttggttcgtt cgccaacgcg cgaacagtgt tggaatctgt gaagttatgc
      241 accctggcag aaagcctcgg cggcgtggaa accctgatat cgcatccggc tacaatgact
      301 catgcttcgg ttgacgctga taagcgcgaa cgactgggca tcactgatgg acttgttaga
      361 atctccgtag gcattgaaga tacagacgat ataattgcgg atatcgagca ggccctggac
      421 aagatttagt cagactgaac ttttatcttg cctcgaacgc tggggcgaac tacattttgt
      481 gcggaaactc gacgagtgac agtcaagtat agacaggtta caatcacttc gttctcagcc
      541 tttatcagac tccttttatt tcgctctcct tatgattgta gagttatacg ccaaatcaga
      601 tgttggccgt gtccgacgtg gcaatgaaga caactttctg gttctagatc tctcaaccga
      661 gcagacctgg accggcactg acggcaccaa cgcacccgac aaactcaggc gatttgatct
      721 tggcaccaaa ggtctcgtcc ttgttgtttc agacggtatg ggtggagcgc ttgccggtga
      781 cgtcgccagt cgaatggctg ttgactcagt tcgcgagatg cttgtaggcg caggcggtga
      841 agagccgtgc gatccttcaa tcgatctagt cgagtgtttg aagaacgcta ctgtctacgc
      901 aaacctggcg atacatctgc gcagccagga agactcccgt tgcgctggaa tgggagcgac
      961 gtttactgga gctgcagtaa agggaaattc attggatctg gtacaggttg gcgacagtcg
     1021 tggttacgta atccgcaggg gccagattcg actagcaacg aaggaccaat cactcgttca
     1081 gcagttagtc gacgtcggcc agattagcga gagcgaagcg gagactcaca tgtttaggaa
     1141 tgtgattttg caagcgcttg gcgcacaaag tgagatttcg ccagtcaccg gcaagattcg
     1201 actccgacaa ggcgatgctg ttctgctttg tagtgatgga ctttccggaa aactacgcgc
     1261 tgaagacatt caacacatcg tggcgaatag cgatggcgac cttgttaagg cctgtgacgg
     1321 attagttgaa gaagcgaata atcgcggcgg cgaggataac atcacggtag ttctcgccag
     1381 gttccttggc gacgacctcg aagaaccctc caacgaccga atcacaatcg agcttccacc
     1441 actcgaagaa gacaagaccc tggacgacac ctacgaagcg gatactgaac cgcgaatctg
     1501 aagtatttaa gcttgtagac tgtagatttc agctggtttc aaaccagtct gctgcggacc
     1561 tcaatccaaa cgacaatcta aatctgaaat cctttcactc cctgcctctc caatcccgct
     1621 caccttcaat tcgcttaacg tagatcgatg cgccttcgat actttctaca caaacgcgtt
     1681 caccggcttc taaaggaggt tcgcctggcg cggggtacgc tgtccacgtc gacccgaaaa
     1741 ccttaacggc tccctcctgc aatgcgcctc gactagaaga aactacagtg ccaatttttc
     1801 caggcaaagc atcaaca
//
LOCUS       DATCGC010001088         1153 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_482637, whole genome shotgun sequence.
ACCESSION   DATCGC010001088 DATCGC010000000
VERSION     DATCGC010001088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1153)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1153)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1153
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_482637"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..709
                     /locus_tag="VIJ87_10555"
     CDS             <1..709
                     /locus_tag="VIJ87_10555"
                     /inference="COORDINATES: protein motif:HMM:NF015083.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peroxidase family protein"
                     /protein_id="HEY5444891.1"
                     /translation="AGYNFEVDPTIALVFSTAAFRIGHSLLPQSLLLFNKQGIQTGET
                     ALERAIFQPNLINGNGIEPYLRGLALQRPQEVDAYMIDAMRNFLVGGARTQGFDLAAL
                     NIQRGRDHGLPGYNQVRIDYGLSPKASFAEITSDVSLQDKLTLAYTSPDNVDIWVGGI
                     SEDHVNGGLVGETFFTILKEQFERTRDGDRFWYESYLDTATLATVQQQTLGTILKRNA
                     AIGHEVPDDVFHVASSP"
     gene            910..>1153
                     /locus_tag="VIJ87_10560"
     CDS             910..>1153
                     /locus_tag="VIJ87_10560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444892.1"
                     /translation="MVIAKLSMTGFVVGLVSLSSLAIASGQTAKHRPLPQEPLEQYNN
                     PPNYIWRTGVSPAMISQHDAFTSTQVNVDASGRNITG"
BASE COUNT          270 a          319 c          289 g          275 t
ORIGIN      
        1 tgctgggtat aacttcgagg ttgatcccac tattgcgctg gtattttcca ccgcggcttt
       61 tcgtatcggt cacagtctgt tgcctcaatc actcttgctt ttcaataaac aaggtatcca
      121 gactggggag accgcgctcg aaagagctat ctttcagcca aacctgataa acggcaatgg
      181 aatcgaacct tatctgcgcg ggctagccct gcagaggcca caggaagtgg acgcctatat
      241 gattgacgct atgcgcaact tccttgtcgg cggggcacga acgcaaggat tcgacctcgc
      301 ggcgctcaat attcagcgcg gtcgcgatca tggattacca ggttataatc aggtgcgaat
      361 cgactacgga cttagcccga aggcatcctt cgcggaaata acctccgatg tctctctcca
      421 agacaagctg actttagcct acacttctcc cgacaatgtc gatatctggg tcggcggtat
      481 ctcagaggat cacgttaacg gaggtcttgt aggtgagact ttctttacga ttctcaaaga
      541 acagtttgag cggacacgcg atggagatcg tttctggtat gagtcatatc ttgacactgc
      601 gacactggcg acagtccaac agcaaacact tggcacaatt ctgaaacgga acgcggccat
      661 cgggcatgaa gtcccagacg acgtctttca tgttgcctca agcccttagg tggagctaac
      721 gctcgctccc acaaacgcgt cgcattagtt aggtagcccg gaacaagttc ttggtcttct
      781 aggcggatct tgttcgtcgg acagcaacac gaccgcggag taccgcagat tttttgtcgg
      841 tccgtccttt taccttgaca acctagctcc ctcccctgta tgcgggaact ttcgcaccgg
      901 gggtttatca tggtaattgc aaaactttca atgacaggat tcgtcgtcgg cctggtttcg
      961 ttatcaagcc tggccattgc ttcaggccaa acggcgaagc acagaccgct cccgcaagag
     1021 ccgttggaac agtacaacaa cccgcctaac tacatctggc ggaccggcgt ttcgccagcc
     1081 atgatctctc agcacgatgc ctttaccagc acccaggtaa atgtcgacgc gagtggacgt
     1141 aacatcacgg gcg
//
LOCUS       DATCGC010001089         2209 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_214210, whole genome shotgun sequence.
ACCESSION   DATCGC010001089 DATCGC010000000
VERSION     DATCGC010001089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2209)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2209)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2209
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_214210"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..959
                     /locus_tag="VIJ87_10565"
     CDS             <1..959
                     /locus_tag="VIJ87_10565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444893.1"
                     /translation="LSWINGNSGQPNIYYDYRVNFLFSPSALTNRNTWYANLMALAII
                     GFVLPAVWFLYRLFKSSEQNLKPTVVLFLGSFFMATALSWPIWAIVPKLYEIQFPWRW
                     LAITSLASAPLLAACIRYWGEQIRKVRPRDLAVLFAFVLSLGFIVTQQIYDCRYLGRQ
                     ELQPLWQDMRGAVSFKDWLPIWGKEFLKVERMNEPVKSQARVTTVSAWEPQRRVFDVQ
                     AGQAGPVQLRTYYYPLWGAQMNGKTLTTSPTADGLLLVNVPAEAGTVEVVFQEPSRVG
                     IASKISAGVWLLMISGLLVSWLHSVRTKRTIALTDPESTFSY"
     gene            1023..1856
                     /locus_tag="VIJ87_10570"
     CDS             1023..1856
                     /locus_tag="VIJ87_10570"
                     /inference="COORDINATES: protein motif:HMM:NF024091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEY5444894.1"
                     /translation="MTEPSALNTVQATSNSPSVWRRIMAIARNTFLEAVRDRVLYNLV
                     IFVLLLIAGAIFLGELSGGQERKIIIDLGLSTMLLFGVFISIFVGVGLVYKEIERRTV
                     YAIFSKPISRGEFLIGKYLGLCLTLLVNVVIMGVGVSLALLFVHRGWEPLIVTIWPAI
                     LLIYFELMMITGVALLFSSFSSPALSALLTFMVFIIGHFSADLKNLASSMDSVVARGL
                     FILLYYLLPNLSNYSYITPAAHGQLPGAANVLLAMLYAAVYIAVTIAVATLVIGRRNF
                     K"
     gene            1873..>2209
                     /locus_tag="VIJ87_10575"
     CDS             1873..>2209
                     /locus_tag="VIJ87_10575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444895.1"
                     /translation="MSENHRVHTNRKYDFVLIAIVVVGLASVVGLSRIIDARRPAADP
                     TLEEEKLYVTANAARRVSLGFNGLIADWYWMRSLQYVGHKVLSLPADVPLDDLGSLNL
                     KLLAPLLDTA"
BASE COUNT          505 a          546 c          556 g          602 t
ORIGIN      
        1 agctttcctg gatcaacggg aattccggtc aaccaaacat ctactacgat taccgcgtca
       61 attttctgtt ctcaccgagc gctctcacga atagaaacac gtggtatgcg aacctgatgg
      121 cgctcgcaat cattgggttt gtactgcctg cagtctggtt tctctacagg ttgttcaaaa
      181 gctccgaaca aaacttgaag ccgaccgttg ttctgtttct cggttccttc tttatggcca
      241 ccgcattaag ttggccaata tgggctatcg ttccgaaact ttacgaaata cagtttccct
      301 ggcgatggct tgccataacg tctctggcta gtgcgcctct ccttgcagca tgcattcgat
      361 actggggtga acaaattcgc aaagtacgac cacgcgatct tgcggtgctg ttcgcgttcg
      421 ttttgtcctt gggatttatc gtcactcagc aaatctatga ttgccgttat ctgggacgtc
      481 aggagcttca gccgttgtgg caagatatgc gtggtgctgt gagcttcaaa gactggctgc
      541 cgatctgggg caaagagttt ctaaaagtcg aaagaatgaa cgaacctgtt aagtcacaag
      601 cgagagtgac gacagtgtct gcgtgggaac cgcaacgacg tgtctttgat gtccaagcgg
      661 gccaggcagg gccagtacaa cttcgaactt actattaccc gctctggggt gcgcagatga
      721 atggcaagac gctgacgaca agcccgacag ctgatgggct gcttctggta aacgtgcccg
      781 cggaagctgg aacagttgaa gtggtatttc aagaaccgtc acgagtgggc atcgcttcaa
      841 agataagcgc cggtgtatgg ctgttgatga tcagtggcct tcttgtttct tggctacatt
      901 ccgtgcgaac aaagcgcact attgcactga cagatccaga atcgaccttt tcctactgat
      961 ccattttcta ttaaagttat gcgcgtctgg tataacttct caacgaataa ttacaactga
     1021 agatgactga accctcagcg ctgaatactg tgcaagcgac gtcgaattca ccatctgtct
     1081 ggcggcgaat tatggccatc gcgcgcaata cctttctgga agcggtgcgc gatcgggtct
     1141 tgtataacct cgttatcttt gtcctgttac taattgccgg cgcgattttc cttggtgaat
     1201 tgtccggcgg acaagaacgc aaaatcatca tcgatctcgg actcagcaca atgctgctgt
     1261 tcggcgtgtt catttcaatt tttgttggcg ttggtcttgt ctacaaagaa atcgagcgtc
     1321 ggactgtcta tgccattttc tcgaagccaa taagtcgcgg cgagtttttg attggcaaat
     1381 accttggtct atgtctgacg ctcctggtca atgtcgtgat aatgggagtc ggagtctcgt
     1441 tggcgctgct ttttgtacat cgaggttggg aaccactgat agttaccatt tggcccgcca
     1501 tacttctaat ctatttcgag ctgatgatga tcacgggcgt tgcactgctg ttttcctctt
     1561 tctcatcacc agcactgtcg gcgctgttga ccttcatggt attcatcatc ggacacttca
     1621 gcgcggacct gaagaacctg gcgagttcaa tggacagcgt tgttgcacgc ggattgttca
     1681 tcttgctcta ctacttgtta cccaacctga gtaactacag ctacatcacg ccagcggcac
     1741 atggacaact gcccggagca gcaaatgtcc tgttggccat gctctacgca gcggtctata
     1801 tcgccgtcac catcgcggta gcgacactgg ttattgggag acgtaacttc aaatagatca
     1861 gcgtctgact gtatgtctga aaaccatcga gtacatacaa atagaaaata cgacttcgtg
     1921 ctgattgcca ttgttgtcgt gggcctggca agcgtggtgg gactttccag gatcattgac
     1981 gcacgcaggc cagcggcaga tccgactctt gaagaagaga aactctacgt cactgcaaac
     2041 gctgcgagga gagtgtcgct tggattcaac gggttgatcg cagactggta ctggatgcga
     2101 tctttacaat atgtgggtca caaagttttg agtttgcccg ccgacgttcc tctcgatgat
     2161 ctgggcagtt tgaatctcaa acttctcgca cccttgctcg acacggcaa
//
LOCUS       DATCGC010001090         1003 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_148469, whole genome shotgun sequence.
ACCESSION   DATCGC010001090 DATCGC010000000
VERSION     DATCGC010001090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148469"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(488..>1003)
                     /locus_tag="VIJ87_10580"
     CDS             complement(488..>1003)
                     /locus_tag="VIJ87_10580"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEY5444896.1"
                     /translation="SLLETHNGKELFRWEAVAGRYADCRNNTMPRNASPCGTTVDRNA
                     TQLMYMAERVFPALKADPPVVEALLVPFSLNGKTVGTIWVVAHDESRKFDAEDERIVM
                     TLAKFASAAWQMWTARNASETARRELEDKIMELENLHDIVVGRELKMMALKSDVERLQ
                     TENSGLKTNRG"
BASE COUNT          256 a          269 c          235 g          243 t
ORIGIN      
        1 gaccatcagc agacacgaca tacactgagg cgggaactcc atgaatgatc gcttcgcgaa
       61 cgatattctc atgcctgaga tagtcggaat gctgaacgat catgacgaga cctcttggag
      121 tagccaaata gccgatgacg attcatgaag cttacttgac gcgctcaggc attacaacgc
      181 aatattctct tccccaacaa aattgcagtt gaatcgtcgg aagtgctcta aaatcgactt
      241 cagcaaggtg ctgcatccca tgaaccggcg ggcggtaccc agatttaccc taagcaagat
      301 ggagaagagc cacctctgaa cgtctgtatt gcctctatca agaggttcca gcctagcatt
      361 gaaaccagta tacgaacagg cacggcgagt cgggcgttgc tccgccattg cgaagggcaa
      421 gtgttgcgtg atgtgagtaa tatctcgttg aaatcagtaa gtcgcgtcgc agaatcgtag
      481 aggcatctta gccacgatta gttttcaatc ctgagttctc cgtttgtagc cgttccacat
      541 cactctttag cgccatcatt ttcaactcac gtcccacgac aatgtcatgt aagttttcaa
      601 gctccatgat cttatcttcc aattctcgac gtgcggtttc agatgcgtta cgagccgtcc
      661 acatttgcca tgcagcagat gcaaatttcg ccagggtcat aacaatacgt tcgtcctctg
      721 catcaaactt gcgggactcg tcatgggcca ccacccagat agtgccaacc gtttttccgt
      781 tgagcgaaaa ggggaccagc aaggcttcca ccacgggagg gtcggctttt aaggccggga
      841 aaactctctc agccatatac ataagttgag tagcattccg atcaaccgtc gtgccacaag
      901 ggctggcatt tctcggcatg gtgttattgc gacaatcggc gtaccggccc gcaacggcct
      961 cccagcgaaa cagttcctta ccattatgcg tttccaatag act
//
LOCUS       DATCGC010001091         1410 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_182651, whole genome shotgun sequence.
ACCESSION   DATCGC010001091 DATCGC010000000
VERSION     DATCGC010001091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1410)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1410)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1410
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_182651"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..181
                     /locus_tag="VIJ87_10585"
     CDS             <1..181
                     /locus_tag="VIJ87_10585"
                     /inference="COORDINATES: protein motif:HMM:NF012562.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444897.1"
                     /translation="FTQGTIWNIDSFDQWGVELGKQLAQRIIPELESKEKPALNHDSS
                     TNNLIYQYRKSKKAN"
     gene            192..1094
                     /locus_tag="VIJ87_10590"
     CDS             192..1094
                     /locus_tag="VIJ87_10590"
                     /inference="COORDINATES: protein motif:HMM:NF003784.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fructose bisphosphate aldolase"
                     /protein_id="HEY5444898.1"
                     /translation="MKSIDLNEEQLQKMKAHPGFIAALDQSGGSTPGALRLYGIKEGA
                     WSNEDEMFGIVHQMRTRMITSPSFTGERIIGAILFENTMDRDIEGQPTADYLWNVKRV
                     VPFLKVDKGLAAEKDGVQLMKPMPALAALLEKAKSKRIFGTKMRSVIKQANEAGIKEI
                     VNQQFELAAQIIAAGLMPIVEPEVDIHCPEKAKAEGLLKAAILEKLNQLPQGQMVMLK
                     LTLPEQDNFYADFVKHPKVLRVVALSGGYSRDEANKRLRRNHGVVASFSRALAEGLSA
                     QQTNAEFNAVLDKSIQSIFDASNT"
     gene            1175..>1410
                     /locus_tag="VIJ87_10595"
     CDS             1175..>1410
                     /locus_tag="VIJ87_10595"
                     /inference="COORDINATES: protein motif:HMM:NF013030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEY5444899.1"
                     /translation="MDKRIVKLAPSILSADFAYLGKLVREAEEAGADRIHVDVMDGHF
                     VPNISIGAPIVQSLRKITRLPLETHLMISDPDFFL"
BASE COUNT          373 a          359 c          383 g          295 t
ORIGIN      
        1 ctttacacag ggtaccattt ggaacatcga ctcgttcgac cagtggggtg tcgagctagg
       61 gaagcaattg gctcagcgca ttataccaga actcgagagc aaggagaaac ctgctcttaa
      121 ccacgatagc tcaaccaata acctgattta ccaataccga aaatcgaaga aggcaaatta
      181 aaggaggcgt tatgaaatcg atcgacttga acgaagaaca actgcagaaa atgaaggcac
      241 atcccggctt catcgccgcg ctggatcaaa gcggtggcag cactcccggc gcactgcgtc
      301 tttacggaat caaagaaggt gcgtggtcca acgaggacga gatgtttggg atcgtgcacc
      361 agatgcgcac gcgcatgatt accagcccca gctttaccgg agagcggatt attggcgcca
      421 tcctgttcga gaacaccatg gacagggaca ttgaggggca acctacggct gactatcttt
      481 ggaacgtaaa acgtgtggtg ccatttctga aagtggacaa gggcctcgcc gctgagaagg
      541 acggggtcca actgatgaag cccatgcccg cactggccgc gctactcgag aaagctaaat
      601 cgaagcgtat ctttggaacc aagatgcgct cagtcattaa gcaagctaac gaagcaggca
      661 tcaaggagat cgtgaaccag caattcgaat tggcggcgca gatcattgcc gccggactga
      721 tgcctatcgt cgagccagaa gtcgacattc actgcccgga aaaggcgaag gccgaaggat
      781 tacttaaggc ggctattctc gagaagctca atcagctgcc acaaggtcag atggtcatgc
      841 tcaagctcac actaccggag caagacaact tctatgcgga tttcgtcaag catcccaaag
      901 ttttgagggt ggttgcgttg tcgggaggtt attcgcggga tgaagccaat aaacgcttgc
      961 gccgcaacca cggtgtggtc gcaagcttct cgcgggccct tgctgaagga ctatcggctc
     1021 agcaaaccaa tgctgagttc aacgctgtgc tggacaagtc gattcagagt atctttgacg
     1081 cctctaacac ctaagcggaa cacaatcgga aaatcgaatg ggaatcggat gccggggtcg
     1141 ctccacgctg cctatgacca agaggactta agatatggac aagcgtatcg ttaaacttgc
     1201 tccttctatc ctctcggctg attttgccta tttaggcaag ctagtgcgcg aggcggagga
     1261 ggccggggcg gatcgcatcc acgtggatgt catggatgga cacttcgtac ctaacatttc
     1321 gattggggca ccgatcgtcc agtcgcttcg caagataacg cgtctgcctt tggagacaca
     1381 cctgatgatt tccgacccag actttttcct
//
LOCUS       DATCGC010001092         2081 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_148481, whole genome shotgun sequence.
ACCESSION   DATCGC010001092 DATCGC010000000
VERSION     DATCGC010001092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2081)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2081)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2081
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148481"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1390)
                     /gene="lpdA"
                     /locus_tag="VIJ87_10600"
     CDS             complement(<1..1390)
                     /gene="lpdA"
                     /locus_tag="VIJ87_10600"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004148 - dihydrolipoyl dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA];
                     GO_process: GO:0051068 - dihydrolipoamide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HEY5444900.1"
                     /translation="MANENFDVTIIGSGPGGYVAAIRAGQLGLKVAIVEKDTRLGGTC
                     TLRGCIPTKQMLMSAHVYEQMQHAADFGVQASGIQLAFADVQKRKDKVVLKNTKGIEY
                     LMKKNKVTVFKGTGKLALPGKVEVTDAEGKKQTIVSKNIIIATGSVVRPIPGFDTDGK
                     QVVNSDHILELKDVPKSLIVMGSGAVGVEFASVYSRFGAETTIVELLPRLVPLEDEEV
                     SKELERSFRKRGIKAQVDTKLEKLEKTEKGVRVTGKTSKGETVTLEAEMLLVAVGRMP
                     YTEGLGLEGTKIKVDRGFIQVDEYQQTAEKGVYAIGDCVPTPLLAHLASKEGIVAVEH
                     MSGQKDVRPINLRLVPNCTYCDPEVASVGLTEAKAKEQGYDVKVGRFPFSASGKARIL
                     GEEEGFVKIVSEKKYDEILGVHIIGPHATELIAEACVAMQLESTADELGRTMHAHPTV
                     SEAVMEAAEGVHD"
     gene            1611..1991
                     /locus_tag="VIJ87_10605"
     CDS             1611..1991
                     /locus_tag="VIJ87_10605"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEY5444901.1"
                     /translation="MKHSEGFLKLVNEAKNRIQETTVAETQKKLSSDSNVKLIDVRED
                     KEWDAAHAAKAFHLGKGIIERDIEQLVPDKSTELILYCGGGYRSALAADVLQTMGYTN
                     VFSMAGGWKAWQESGAPIEQGPDV"
BASE COUNT          502 a          532 c          523 g          524 t
ORIGIN      
        1 ggtcgtgaac accctcggct gcttccatta ctgcttcaga aactgtcggg tgagcgtgca
       61 tcgttcgccc gagttcgtcg gcggttgatt cgagctgcat cgcgacacaa gcctccgcaa
      121 tcagttcagt tgcatgtggt ccaatgatgt gcacgcctag gatctcgtcg tacttcttct
      181 cactgacaat ctttacaaag ccttcttcct ctccgagtat tcgcgctttg cccgaagcag
      241 aaaaaggaaa cctaccaact ttgacgtcgt agccctgctc ctttgctttc gcctcggtca
      301 agccaactga ggcaacttca ggatcgcaat aggtacagtt tggaacgagt ctgagattga
      361 tcggacgcac atccttctga ccagacatgt gctcaacagc aacgattcct tctttggaag
      421 cgaggtgagc gagtagtggt gttggcacgc agtcgccaat cgcatacaca cctttttcag
      481 ctgtctgctg atactcatcg acttgaatga aaccacgatc gactttgatt ttcgtgcctt
      541 cgagtcccag tccttcggtg tagggcatac ggccaactgc gacaagcagc atctcggctt
      601 ccagcgtcac agtttcgcct ttgcttgtct tgccggtaac gcgaacaccc ttctcagttt
      661 tctcgagctt ctctaactta gtgtccacct gtgctttgat tccgcgcttg cggaaacttc
      721 gctcgagttc ttttgagact tcctcgtcct caagcggaac aagtcgaggc aacagttcaa
      781 cgattgtcgt ctccgcacca aaacgtgagt agaccgaagc aaactcaacc ccaaccgcac
      841 cagaacccat gacgattaac gacttgggaa cgtcctttaa ttcgaggatg tggtcgctgt
      901 taacgacctg cttaccatcg gtatcgaatc cgggaatcgg tcgaacgact gagccagtcg
      961 caatgatgat gttcttcgac acgatggtct gcttcttgcc ctcggcatcg gtgacttcga
     1021 ctttcccggg cagtgcaagt ttgccagtac ctttgaaaac agtgaccttg ttcttcttca
     1081 tcaggtactc gatacccttc gtgttcttca ggacgacctt atctttacgt ttctggacgt
     1141 cggcaaaagc cagttgtatt cccgaagcct gcacgccaaa gtcggcagca tgctgcatct
     1201 gttcatacac gtgggccgac atgagcatct gctttgtcgg aatacaaccg cgaagggtac
     1261 aggttccgcc gaggcgtgta tccttctcga cgatagcgac cttgaggcct aactgtcctg
     1321 cgcggatggc tgcgacgtag ccgccaggac cgctgccaat gatcgtcacg tcaaagtttt
     1381 cgttggccaa tttagaagtt cctctcgtta aagcagtgtt tggttaaaag tgatgagtta
     1441 gtagtgatgg gaaaattcac gcgggtgctc gtcacttaac gtgcagactc aagctattca
     1501 ttgaaagtca gcaattgaaa gacgggcatt ataatcgttt gccacgcggc caccaaacag
     1561 gcatgctgag caggaattaa caacaaatac agaccaatcg aggatgagcg atgaagcatt
     1621 cagaaggttt cctgaagttg gtgaatgagg caaaaaaccg gatacaagaa acaactgttg
     1681 ccgagacgca aaagaagttg agcagcgata gcaacgtcaa attgatcgat gttagggaag
     1741 acaaagaatg ggacgctgcg catgcggcta aggcattcca cctgggtaaa ggaatcattg
     1801 aacgtgatat cgaacagctg gttccagaca agtcgacaga gttgattcta tattgcggcg
     1861 gcggttaccg gtctgccctt gctgctgacg tcttgcagac tatgggatac acaaatgttt
     1921 tctccatggc tggaggatgg aaagcgtggc aggaatctgg cgcaccgatt gaacaaggcc
     1981 ctgacgttta acgggatttg gtgggctgaa gtcggactaa tttgaaaata aatagggcgt
     2041 gctcttgagg agcacgccct attgttttcc caattaccgc t
//
LOCUS       DATCGC010001093         1239 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_148493, whole genome shotgun sequence.
ACCESSION   DATCGC010001093 DATCGC010000000
VERSION     DATCGC010001093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1239
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148493"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..493)
                     /locus_tag="VIJ87_10610"
     CDS             complement(<1..493)
                     /locus_tag="VIJ87_10610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444902.1"
                     /translation="MNKEAGNQTPATKSYRVLLILIIGLAAFSSAMNELNQLQSLTLQ
                     ASNLIGAWTDVMVPTASASGPVVANSCLANFVPSLPQAGSHSDEFRWNGNIAPGLAIE
                     VKGINGEINAEPTSGSEVQVVASKRSRRSDVNSVQIKVQQHAGGVTICALYPNEDGEY
                     PTDC"
     gene            complement(766..>1239)
                     /locus_tag="VIJ87_10615"
     CDS             complement(766..>1239)
                     /locus_tag="VIJ87_10615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444903.1"
                     /translation="GTVSGDIQLDHVSNPKVSAKTVNGTVTMTGPLARSGYYGFTTMG
                     GDVVLMMPHDVSFTLNAKVTEKGDIVSDFPLKYLPEPPSPGIRTPKPSPVPEPAPKTP
                     PTKTMPPKSGPVIAPIVIAKPMIVNPFRRFTATYGSGDATISLSSFGGTLRLKKI"
BASE COUNT          275 a          320 c          320 g          324 t
ORIGIN      
        1 tgcagtcagt cgggtattca ccgtcctcgt ttggatagag tgcgcagata gtcacgcccc
       61 ccgcgtgttg ctgcactttt atctgaaccg agttgacgtc gctgcgcctc gaccgtttgc
      121 tggcgaccac ctgaacttcg gaaccgctcg tcggctcagc gttgatttca ccgttaatgc
      181 ctttcacctc gatagccaag cccggcgcaa tgtttccatt ccagcgaaac tcatctgagt
      241 gactgccggc ctggggtaac gatgggacaa aattcgccaa acatgaatta gctacaacag
      301 gtccgctggc gctcgctgtc ggtaccataa cgtcagtcca ggctccgata aggttactgg
      361 cttgaagagt caggctctga agctgattca actcgttcat tgcgcttgaa aatgccgcca
      421 aaccgatgat cagtattagg agcacgcgat aagacttcgt tgcaggtgtt tgatttccag
      481 cttccttatt cattgccata acctcttcat tttttagggc cgagagcagc cagcctgtta
      541 atactagttc taactgccct cagccctttc tgcgttgctc tatattcaaa acaccgaccc
      601 tgaattggtt gtggcaataa agttacgtgg ggttaagtta ttttgggagt taggtctttg
      661 tacttagttc tttgaacttt gtactcgaac cttcgcgtta cggttagttt tggagccgga
      721 gtgaaagtca aagcaccaag ctcaaagcac taagctccgc tttggtcaaa tcttcttgag
      781 ccgcaatgtc ccaccaaacg atgacagcga gatcgtcgca tcgccggatc catacgtagc
      841 ggtaaatcgc ctgaaagggt taacgatcat cggtttggcg atcactatcg gtgcaatcac
      901 cggcccagac ttcggaggca tggtcttggt tggtggagtt ttcggagcag gctcaggaac
      961 cgggcttggc ttgggagtgc gaatgcctgg cgatggaggt tcaggcaagt acttcagggg
     1021 aaagtcggaa acgatgtcgc ccttttcagt aactttagca ttgagtgtga atgagacgtc
     1081 gtgcggcatc atcaacacaa catcgccgcc catcgtcgta aaaccgtagt agccggaacg
     1141 cgccagcggc cctgtcatcg tcacggttcc gttgactgtc ttggcggaga cctttggatt
     1201 actcacgtga tcgagctgta tatcaccgct gacagttcc
//
LOCUS       DATCGC010001094         2550 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_482673, whole genome shotgun sequence.
ACCESSION   DATCGC010001094 DATCGC010000000
VERSION     DATCGC010001094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2550
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_482673"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..230
                     /locus_tag="VIJ87_10620"
     CDS             <1..230
                     /locus_tag="VIJ87_10620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444904.1"
                     /translation="LEGVLKEHEDFVEARVLLASVYYRLNRVEDGDREKAIVEKLNLE
                     QQSKQPGVHVGSQTPTPKSSPTPADNTKQPE"
     gene            227..1471
                     /locus_tag="VIJ87_10625"
     CDS             227..1471
                     /locus_tag="VIJ87_10625"
                     /inference="COORDINATES: protein motif:HMM:NF024299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5444905.1"
                     /translation="MRGSLLTTARGLIVATATMAVLAICSSLCTAQSTRRSRSKTAPA
                     QPQLSAKANVEFEQFAKLADEARLSERIDDAISLYGKALKIKPQWPDGWWYIGAILYE
                     KDQYAQARDAFQNVVALEPSRGQAWGMLGLCQFQIGEYERSVVSLQRGRKLGVNDNSE
                     LAAVVRYHTALLYIRFGEFEIAFEILREFMRVGNESPKVVEAFGLTVLRMPFLPKEAP
                     PEKREQIMIAGQAGSNMAARRLDQARESFAILLERYPNEPNVHYVYGVFLLSQDADAA
                     LKEFKRELEISPAHYPSMVQMAFEYLKRDQYNDALPLAEKAVQLAPKMYAARNVLGRI
                     LLELDQVDRAVKELEEGVRIAPTSPEMHFALARAYTRAGRKDDANREREAFKKLQDQS
                     GDQQNPQNGSAPTASPDKPKPK"
     gene            1511..>2550
                     /locus_tag="VIJ87_10630"
     CDS             1511..>2550
                     /locus_tag="VIJ87_10630"
                     /inference="COORDINATES: protein motif:HMM:NF024827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiheme c-type cytochrome"
                     /protein_id="HEY5444906.1"
                     /translation="MAHVNQSVLLMIALLLGAAVGGVVVYTSTAVSAQVTVRQKWNPR
                     RVPAGTEFIGDKVCAECHKRPSEKYFQSGMAFAMEAIPDSKVLGQNPQLALTLGPYKY
                     EIKRNGKESTYSVTDGKDTLSAPIVYAFGQGRMGQTYVLQHDGKFYESRMSFYNETKG
                     LDFTIGSPRGVPKTLDEAFGRVLPNNEVVSCFGCHSNGAISGQQIRLEKLTHGVRCEN
                     CHGPGGQHVADINKGERGYKSIFNPARLSGDELSQQFCASCHRGAEEFSLLKSMEINN
                     VRFQPYRIFHSKCYSDDRNISCTACHDPHEPLKEGAAEYDQKCLACHALKGKPAAQGS
                     SPSCPVAVKECTT"
BASE COUNT          653 a          591 c          703 g          603 t
ORIGIN      
        1 tgcttgaagg agtgctgaag gagcacgagg actttgtgga agcccgggtc ttgttagcgt
       61 cagtctacta ccggctaaat agagtagaag atggcgatcg agaaaaggcg atagttgaaa
      121 agctgaactt ggagcagcaa agtaagcaac ctggggtgca cgtgggaagt caaacgccta
      181 ctccaaaatc ttctccgact cctgccgaca acaccaaaca accagaatga ggggttctct
      241 attgactact gccagggggc tgattgtcgc aactgctacg atggcggtgt tggcaatctg
      301 ctcgtcgctt tgtactgctc agtcgactcg tcgatcacgc tcaaaaactg caccagccca
      361 acctcaactc tcagccaagg cgaatgtcga gtttgaacag ttcgcaaagc ttgctgacga
      421 agcacgtttg tcggaaagaa tagacgacgc gatttcgctc tacggtaaag cgttgaagat
      481 taaaccgcag tggcctgatg gctggtggta tatcggggcg attctttatg agaaggatca
      541 gtacgcccag gctcgcgacg catttcagaa tgttgttgcg cttgagccaa gccggggtca
      601 agcgtgggga atgttaggac tgtgtcagtt tcaaattgga gaatacgaac ggtcagttgt
      661 ttccctgcaa cgtggtcgta agttgggggt gaatgacaat tccgaactag ctgcggttgt
      721 taggtaccac acagcgctac tctacattcg ctttggagag ttcgagattg cttttgagat
      781 tttgagagag ttcatgcgcg tcgggaacga aagccctaag gttgtcgaag ctttcggttt
      841 gactgttttg cgaatgccgt tcttgcccaa ggaagctccg cctgagaagc gggagcaaat
      901 aatgatcgcg ggtcaggctg gttcgaacat ggctgcacgc cgtttggatc aagcgagaga
      961 atccttcgcg attttgctgg agcgctaccc gaatgaaccg aacgtgcatt acgtctatgg
     1021 tgttttcctg ctgtcgcaag atgctgatgc tgcgctcaag gagtttaagc gggaattgga
     1081 aatttcgccg gcacattacc cctccatggt gcagatggcg tttgaatatc taaagcgcga
     1141 tcaatacaac gatgcattgc cgctcgctga gaaggcagtg caacttgctc caaagatgta
     1201 tgctgcccgt aatgtacttg gccgtattct gcttgaactg gaccaggttg accgggcggt
     1261 aaaggagctc gaagaaggcg tgcgaatcgc accgacaagt ccggaaatgc actttgcact
     1321 tgctcgcgct tatacgaggg cagggcgcaa agatgacgcc aaccgggaac gcgaagcgtt
     1381 taagaaactt caggaccaaa gtggcgacca acagaatcca caaaatggat ccgccccaac
     1441 tgcatcccca gataaaccga aaccgaaata acgtcgctga ttatccattg ctctgctcgc
     1501 gaaccaacta atggctcacg tcaaccagtc tgttttgcta atgattgctt tgctgctcgg
     1561 ggcggcagtt ggcggtgttg ttgtttacac gtcaaccgca gttagtgcgc aagttactgt
     1621 tagacagaaa tggaatcctc gaagggttcc agccggaacg gaattcattg gcgataaggt
     1681 ttgtgctgag tgccataagc gcccctccga aaagtatttc caaagcggga tggcatttgc
     1741 gatggaagcg attccagact cgaaagtgtt gggacaaaat ccgcaattgg cgttaacgct
     1801 cggaccctat aaatacgaga ttaagaggaa cggcaaagag agcacttact ccgttaccga
     1861 tgggaaagac acattatcgg cacccatcgt ttatgcgttt ggtcagggta gaatgggcca
     1921 aacttatgtt ctccagcatg atgggaagtt ttatgaaagt cggatgagtt tctacaacga
     1981 aacaaaggga ctcgatttca caatcggttc accgcgtggt gttccgaaaa cgctcgatga
     2041 ggcgtttggg agggtgctgc caaacaacga ggtagtgagc tgttttggtt gtcattcaaa
     2101 tggcgctatt agtgggcaac aaatccgact tgaaaagttg acacacggtg ttcgttgcga
     2161 aaactgtcat ggacctggcg gacagcacgt tgccgatatc aacaaaggcg agcggggcta
     2221 caaaagtatt tttaatcccg ctcggctgag cggtgatgaa ttgtctcaac agttctgtgc
     2281 ttcatgccat cgcggtgcgg aagaattctc cttgctcaag agcatggaaa tcaacaacgt
     2341 gcgtttccaa ccctatcgca tctttcacag caagtgttat tcagacgata gaaatatcag
     2401 ttgcaccgct tgccacgatc cgcacgagcc gcttaaggaa ggtgctgccg agtacgatca
     2461 gaagtgtctc gcttgtcatg ccctgaaggg caaacccgct gctcagggta gttcgccaag
     2521 ttgtcccgtt gccgttaaag agtgtacgac
//
LOCUS       DATCGC010001095         1673 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_347832, whole genome shotgun sequence.
ACCESSION   DATCGC010001095 DATCGC010000000
VERSION     DATCGC010001095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1673)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1673)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1673
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_347832"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..350
                     /locus_tag="VIJ87_10635"
     CDS             <1..350
                     /locus_tag="VIJ87_10635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444907.1"
                     /translation="VHSCSTELLGSVRLGDANERCSSTQKPEGADQEIYRIPKKRRLV
                     SFNRVTNKLKHPPNNEKTQSPAPTKNEERQRQNNHRDTDTVRQPIQRMLMFGFVVTKE
                     VLLHVGLNFGLWT"
     gene            complement(406..738)
                     /locus_tag="VIJ87_10640"
     CDS             complement(406..738)
                     /locus_tag="VIJ87_10640"
                     /inference="COORDINATES: protein motif:HMM:NF014662.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XdhC family protein"
                     /protein_id="HEY5444908.1"
                     /translation="MSSTLAQRELYRMLNEAGDRGERVVIATVAHTRGSTPQRRGAKM
                     LFFQNGEVAGTVGGGCIEAEVWAGAREAMRNGKSELKHFSLTADAASEEGMVCGGTMD
                     IFVEVIKP"
     gene            818..1540
                     /locus_tag="VIJ87_10645"
     CDS             818..1540
                     /locus_tag="VIJ87_10645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444909.1"
                     /translation="MATQTISRRINDRKLYILAAILTPIIVLIGFARTYYLKGFFSTP
                     VIPSRLVHFHGLVMTSWVVLFVVQVALVETKRVKTHQRLGILGSALAALVFVVGTLTG
                     IYAAARGASPGPPALQFLIIPLGDMFVFAILVGTALYFRRKLAIHKRLMLLGAINLLA
                     PAIARIPLSFILNGGPLAFYGLTDLCLLACVAFDTIKHRRLHPAFLWGGLFIVVFQPL
                     RLMFAGTDLWLTIATTLVGLVK"
BASE COUNT          393 a          477 c          384 g          419 t
ORIGIN      
        1 tcgtccatag ttgttctacg gaattacttg gaagcgtgcg gcttggcgat gccaacgaga
       61 gatgcagctc gacgcaaaag ccagaggggg ccgatcagga gatataccgg attcctaaaa
      121 aacgccggtt ggtttccttc aatcgcgtga ccaacaaact gaagcatcca cccaacaatg
      181 aaaagaccca aagcccagcg ccaactaaaa atgaagagcg gcaacgacag aacaatcatc
      241 gggataccga tactgtgcgt cagcctattc agcggatgct gatgtttgga tttgtagtta
      301 ctaaggaagt cctgttgcat gttggtctca actttggact ttggacctag gtctttgcag
      361 tgatcaaagg ccaaagacct aaaacccaag gccaaaaacc aaatcctacg gttttatcac
      421 ctcaacaaat atatccatcg ttccgccaca aaccattcct tcttcactag ctgcatcagc
      481 tgttagtgag aagtgtttca actccgactt gccattgcgc atcgcttcac gagctccggc
      541 ccacacttcc gcttcgatgc aaccgccacc aacagtgccg gcaacttcgc cgttttggaa
      601 gaagagcatc tttgctccac gtcgctgtgg agttgaacct cgcgtgtgag caacggtcgc
      661 aataaccaca cgttcacctc gatcgccggc ttcattaagc attcgataga gctcgcgctg
      721 tgccagagtt gatgacatgt gtgaaagtct acgctacgca ctgcacaagc gacaaaccga
      781 agtttatcgg acataatgct ccgccacgga gacccccatg gcgacacaaa ctatttcccg
      841 acgcatcaac gatcgcaagc tctatatcct ggccgcgatc ctaactccca tcattgttct
      901 catcggtttc gcacgcactt actacctgaa aggattcttc agcaccccgg tcattcccag
      961 tcggctggtc catttccacg gcttggtaat gacatcgtgg gtcgttctct ttgtcgtgca
     1021 agtggcactc gttgaaacca aacgggtaaa gacacaccaa cgtctcggca ttctgggttc
     1081 cgcgcttgcc gctttggtgt ttgttgttgg aactctcaca ggaatctatg ctgccgcccg
     1141 aggcgcatcg cccgggcctc ccgcgctgca atttttgatc atcccgctcg gtgacatgtt
     1201 cgtatttgcc attctggtag gcaccgccct ctacttccga cgcaagctcg caattcacaa
     1261 acggttgatg cttctcggtg cgatcaatct tttagcaccc gccatcgcaa gaattccgct
     1321 ttcgttcatc ctgaatggcg gtcccctggc attttatggt ttgaccgatc tgtgtttgtt
     1381 agcatgcgtg gcgttcgaca cgatcaaaca tcggcgactc cacccggcat ttctctgggg
     1441 cggtctcttc atcgtagtgt tccagccgct gcggctgatg tttgcgggaa ctgacttgtg
     1501 gctaacaatc gccacaacgt tggtaggttt ggtcaaataa gtcgaagaaa tattgaacta
     1561 attactgacg gttttgttcg tgtgatttcg tggatctgat cacttcccat cccgactccc
     1621 aaacacctca ttcatatcgc caaacggcgc gccgaccgct aatgcgtcaa act
//
LOCUS       DATCGC010001096         1845 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_84378, whole genome shotgun sequence.
ACCESSION   DATCGC010001096 DATCGC010000000
VERSION     DATCGC010001096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1845)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1845)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1845
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84378"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..305
                     /locus_tag="VIJ87_10650"
     CDS             <1..305
                     /locus_tag="VIJ87_10650"
                     /inference="COORDINATES: protein motif:HMM:NF025715.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4404 family protein"
                     /protein_id="HEY5444910.1"
                     /translation="LKLVPQRKRRNMEKEKLHQELEHLHAQLQQIDSLDDSEREQLLS
                     LAQDIRRILDYKGTDAGHYQGLIDRVRDTVTVFEAAHPRTTLLMRQVLDQIAYLGV"
     gene            complement(328..1062)
                     /locus_tag="VIJ87_10655"
     CDS             complement(328..1062)
                     /locus_tag="VIJ87_10655"
                     /inference="COORDINATES: protein motif:HMM:NF014090.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VIT1/CCC1 transporter family protein"
                     /protein_id="HEY5444911.1"
                     /translation="MISKPHLEHEHSSQAIQQRLDMGPQHNYLRDWIYGGIDGSVTTF
                     AVVSGVSGARLSSWIILVMGFANLLADGFSMAASNYLGTKAEHDDLQRLEAIENRHID
                     LEPEGEREEVRQIFQQKGFLGEDLRRIVELVTSERKRWVRTMLTEEYGLPYAVRSPWT
                     AALSTFGAFIVCGIIPLLPYLFHLPQALTLSLIMTGAVFFAIGSAKSRWSTASWLRSG
                     LVTLFVGVIAAGLAYAVGVILRVIAE"
     gene            1314..>1845
                     /locus_tag="VIJ87_10660"
     CDS             1314..>1845
                     /locus_tag="VIJ87_10660"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEY5444912.1"
                     /translation="MTERMKILIGYDGSHCADAALDDLRRAGLPEEVEAQVLSIAEIW
                     LPPPPPSNYEIVEQAREVKTPADLKRVYSKDSAAAKEALCLAQRAQERLKSIFPLWEV
                     TADSLCGSAAWELIAKADLWKPDLIVVGSHGRAGLGRLVLGSVSQRVLTEAHCSVRIA
                     RGRVEDPEESVRLIIGI"
BASE COUNT          486 a          465 c          476 g          418 t
ORIGIN      
        1 tattgaaatt ggtcccgcag agaaaaagaa gaaacatgga aaaagaaaaa cttcatcagg
       61 aattggaaca tctgcatgct cagcttcagc aaatagactc gttggacgac agtgagcgag
      121 aacagctttt aagcctggca caggacattc gaagaatact cgattacaaa ggaactgacg
      181 caggccacta tcaggggctg attgatcgag tgagagatac ggtcactgta ttcgaagccg
      241 ctcatccgag aaccactctg ttgatgagac aagtgttaga tcaaatagcc tatcttggtg
      301 tttagtcttg cgccaaccca cgctcaatca ctccgcgata actcggagaa tgactccgac
      361 tgcatacgcc aggccggctg cgatgacacc gacaaaaagg gtaaccaatc ccgaccgtaa
      421 ccatgaagcc gtggaccacc gactcttggc tgaaccgatg gcaaagaaca cggctcctgt
      481 cattatcagc gaaagagtca acgcttgggg gagatggaac aagtagggaa ggagtggaat
      541 aatcccgcaa acaataaacg caccgaatgt gctcagtgct gctgtccaag gtgaacggac
      601 tgcgtatgga aggccatact cctccgttag catggtccgg acccaacgtt tacgttcgct
      661 ggtaactagt tcaacgatcc gcctcaaatc ttctcccaaa aaaccctttt gctgaaaaat
      721 ctgtcttact tcttctcgtt caccctcggg ctctaaatcg atgtgacgat tctcgattgc
      781 ctccagacgc tgtaagtcgt catgctcggc ttttgttccc aggtagttac ttgccgccat
      841 agaaaatccg tctgccaaga ggttcgcaaa ccccatcacc agaattatcc atgacgaaag
      901 tcgtgcacca gacactccgc taacgacagc gaatgtagtt actgagccat cgataccccc
      961 gtagatccag tcacgtagat aattgtgttg ggggcccatg tcgagccgct gttgaatggc
     1021 ttgcgacgaa tgctcgtgtt caaggtgtgg ttttgagatc attatccaaa ctccctctga
     1081 atatcgtgct gttatgtccc aagcttcagt ccctgagcgc gaaaacatac acaaaagaaa
     1141 ctcgacgctg cggaaggtta cgcactattg agaatcgtac tttcgtcaaa gccgcatcaa
     1201 ttcgacttgc gtgtcaggaa cacatcttgc gctcagcaaa cctaaggtac cagcaattta
     1261 ggcaccgcgc gttgagttgg atcggcgcac ggggcgcatc tcaggaggag ataatgactg
     1321 aacgcatgaa gattcttatt ggttacgatg gctcgcactg cgcagacgcg gcgcttgatg
     1381 acctgcgccg cgcggggttg ccggaggaag ttgaagcaca agtcctttcg atagccgaaa
     1441 tctggcttcc gccgccgccg ccttcaaatt atgaaatcgt agaacaggct cgggaagtga
     1501 agactcccgc cgatttgaag agggtctatt caaaggactc cgcggccgcg aaggaagctc
     1561 tctgtttggc ccaacgggca caagagcgac tcaaatctat atttcccctg tgggaagtta
     1621 cggcagactc tttgtgcgga tctgctgctt gggaactaat cgccaaagct gatctgtgga
     1681 aacccgatct aatcgttgtt ggctcacacg gccgagcggg actcggtcgt ttggtgctag
     1741 gaagcgtttc gcaaagagta ttgaccgagg ctcattgctc tgtccgcatt gcgaggggac
     1801 gagtcgagga tccagaggag tcggtaaggt tgattattgg tatag
//
LOCUS       DATCGC010001097         1017 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_413597, whole genome shotgun sequence.
ACCESSION   DATCGC010001097 DATCGC010000000
VERSION     DATCGC010001097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1017)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1017)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1017
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_413597"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1017
                     /locus_tag="VIJ87_10665"
     CDS             <1..>1017
                     /locus_tag="VIJ87_10665"
                     /inference="COORDINATES: protein motif:HMM:NF015706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="EF-Tu/IF-2/RF-3 family GTPase"
                     /protein_id="HEY5444913.1"
                     /translation="GSTWGTHPKTGDEIERKVSESDPFSGLAFKIATDPFVGKLAYFR
                     VYSGKLQAGSYILNSSTGEKERVGRIVRMQADKREDVTEVSAGDIAAIVGLKGTTTGN
                     TLCDTNNPIVLESIDFPEPPVSIAIEPKTKSDQEKMSIALQRLAEEDPTFRVKVDDET
                     GQTIISGMGELHLEILVDRMKREFNVEANIGQPQVAYRETIRKDAVEIQGKFVRQSGG
                     RGQYGDVWLRLSQNEKGAGFEFINSIKGGVVPGEYIKPVQQGIEEAMNNGVIAGYPVV
                     DIKVELYDGSYHEVDSSEMAFKIAGSMALQEGVKKANPVLLEPIMKVVVVTPEQFMGD
                     VIGDL"
BASE COUNT          264 a          271 c          271 g          211 t
ORIGIN      
        1 cggttcaacc tggggtaccc acccaaagac cggcgacgaa atcgagcgca aagtctctga
       61 aagtgatccg ttttctgggc tcgcctttaa gattgcaacc gacccattcg tgggtaagct
      121 cgcatacttc cgtgtgtact ccggtaaatt gcaagccggt tcgtacatcc tcaatagctc
      181 aaccggtgaa aaagagcgcg tgggccgtat cgtccgcatg caagccgaca agcgcgagga
      241 cgtaaccgaa gtttctgctg gggatatcgc cgcgattgta ggccttaaag gcaccacgac
      301 cggtaacact ctgtgtgaca ccaataaccc gatcgttctt gaatcgatcg acttcccaga
      361 gcctccggtt tcgatcgcta tcgagccaaa aaccaaatcc gaccaagaaa aaatgagcat
      421 cgcgctccag cgcttagccg aagaagaccc gaccttccgt gtgaaggttg acgacgaaac
      481 cggccagacc atcatcagtg gtatgggcga gttgcacctt gaaatcctcg ttgaccgcat
      541 gaagcgcgag ttcaacgtcg aggcgaacat cggccaacca caggttgcgt accgtgaaac
      601 catccgcaaa gatgccgtgg aaatccaagg taagtttgtc cgccaatctg gtggtcgtgg
      661 tcaatacggt gacgtttggc ttcgcctttc acagaacgaa aagggcgccg gcttcgaatt
      721 catcaactcg atcaagggtg gtgtggttcc cggcgaatac atcaaaccgg tccagcaagg
      781 tatcgaagaa gccatgaaca acggtgtaat tgccggctac ccggttgttg acatcaaagt
      841 tgaactctac gacggaagtt accacgaagt tgactcgagc gagatggcgt ttaagatcgc
      901 cggctccatg gcgctgcaag agggcgtcaa gaaagcaaac ccggtactgc ttgagccaat
      961 catgaaagtg gttgtcgtaa ctcctgagca attcatgggc gacgttatcg gtgatct
//
LOCUS       DATCGC010001098         1643 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_413608, whole genome shotgun sequence.
ACCESSION   DATCGC010001098 DATCGC010000000
VERSION     DATCGC010001098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1643)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1643)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1643
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_413608"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            362..>1643
                     /locus_tag="VIJ87_10670"
     CDS             362..>1643
                     /locus_tag="VIJ87_10670"
                     /inference="COORDINATES: protein motif:HMM:NF014732.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Wzz/FepE/Etk N-terminal domain-containing
                     protein"
                     /protein_id="HEY5444914.1"
                     /translation="MMSQDNRLIPLPAVDRTLDRPIGDLGPARSYGPAANEPTQLRDY
                     LFVVIKRKWLILSLCVVVTSLVAVQMYRQPSIYQAESTIRIEQRQKSALKITDFVVNA
                     PADANFWGTQIKLLQSPTLARQVALTLDLQHNPTFFGGGQSQGVFSSLRRMFSGDRQK
                     QKVSPATQTGLNVVGTEQLRDQPLSPEELSALEPYEDMIIGNEQVDGIVGTNLFTIKY
                     KHTDPELAQKIANTLADVFASNNLERSTMNSTRADDLLAREIAELQAKIRHDTEVLFN
                     YQRAHNLPLTANSVLDVEAARLSDLTKQLLESENRRKNTEAAYKSAVASTDKFSLPEV
                     QKSGRVSALRDRISLLKEKREGLKVIYTDEWPEVKKLDFQIKPLEAELDRVVNETIGS
                     LKAEYEGAVANENSIRQMYNSQKGTTSQQTRDQIE"
BASE COUNT          440 a          407 c          444 g          352 t
ORIGIN      
        1 atcttcccgg cgtatttcat gtggtcaatt caggtgaggg aacaagcttc gcaactttcg
       61 cgcaagcagc gctcgaactc gcagggtcca acgactcaac ggtggagttt gtgagtttcg
      121 actcgctgag caggccggca cctcgcccga gaaattcgcg cttgaggtgt ttgtggtcgg
      181 aaccgctcgg gctgaaaccg cttccctcat ggcaagacgg cctggagagg ttcgtcgaca
      241 ggatcagcca aaaacataca aaagagaggc aatttggtgg gtagaggacc ttgcctcagg
      301 ctgagtctct gctattattt ctagcactta aagctttccg gagcgtgaag gtcgaaaaaa
      361 tatgatgtcg caagataatc gcttgatccc gttacccgcc gttgaccgaa cattggacag
      421 accaatcggt gatcttggtc cggcgagatc gtatggccct gccgcgaatg aaccgactca
      481 gctgcgcgac tacttgttcg ttgtgataaa acgcaaatgg ctgatcctga gtctatgcgt
      541 ggtcgtgacc tcgctggtag ctgttcagat gtaccgccaa ccatcgattt accaggcgga
      601 gtcgaccatc cgaatcgaac agcgtcagaa gagtgcattg aagataactg acttcgtcgt
      661 gaatgcgccc gctgatgcaa atttctgggg cacacaaatc aagttgttac aaagtccgac
      721 ccttgcgaga caggtcgctc taacccttga tctgcagcac aatccgactt tctttggtgg
      781 tggccagtca cagggagtct tctcgtcgtt gaggagaatg ttcagtgggg accgacagaa
      841 gcagaaggtt tcgccggcaa ctcagaccgg actaaacgtt gtaggtaccg agcaattacg
      901 agatcaaccg ctctcacctg aggaactatc cgcgcttgag ccttacgaag acatgatcat
      961 cggcaacgag caggtcgacg gcattgtcgg gacaaacctt ttcaccatca aatacaaaca
     1021 caccgatccg gagctggccc agaagatcgc caacactttg gctgacgtat ttgcgagtaa
     1081 taacctggaa cgttcaacaa tgaattcgac gcgagcggac gatttactgg cccgagaaat
     1141 cgccgaactt caagccaaga tccgccatga cacggaggtg ttgttcaact atcagcgagc
     1201 gcacaatctt ccgctgactg ccaacagtgt cctcgatgtt gaggcagcac gattgtccga
     1261 cttgacaaaa caattgttgg agtccgaaaa caggcgtaag aacacggaag ctgcttacaa
     1321 gagtgccgtg gcgagtacgg acaaattctc gcttccggaa gtgcagaagt cgggaagagt
     1381 ctcggcgctt cgcgatcgca tatctctatt gaaggaaaaa cgtgaggggc tgaaggtaat
     1441 ttatacggac gaatggcctg aggttaagaa gttggacttc cagatcaaac ctctcgaagc
     1501 agagttggac agagtagtaa acgagacgat cggttctctc aaagccgaat acgagggggc
     1561 tgttgctaac gaaaacagta ttcggcagat gtataactcg cagaagggaa caaccagtca
     1621 acaaacgcgc gaccagatag aga
//
LOCUS       DATCGC010001099         3528 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_50357, whole genome shotgun sequence.
ACCESSION   DATCGC010001099 DATCGC010000000
VERSION     DATCGC010001099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3528)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3528)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3528
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50357"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1082
                     /locus_tag="VIJ87_10675"
     CDS             <1..1082
                     /locus_tag="VIJ87_10675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444915.1"
                     /translation="ARYVGTRGIHLLSQNRINRQAKVAPEDGRPGLPTFLTAPSQATL
                     NALSLDLTQINARSSFVSRYANAGFNGASVVAFLSNGNSTYHGASAQVTKRFSQGFQM
                     TGAYTFSKLIDDTTAEVFSTVLSPRRVEDFQNLRRERATSALDHTHRFVSSMIYELPW
                     FSKTTGLTKTLLGGFNLAGTYTYETGERVTVRSGNDANLNGDNAGDRAILNPGGTEGV
                     GSSVTPLCRVTGNCNAVGAGAVVGYLANNPNAKYIQTGSGAQSTIGRNTFLLPPINNV
                     DFSVFKNFKFGESSRYIQIRADFFNVFNHPQYVPGSVNSVDPVGTTGLTTLNQVTPLT
                     PDFLNPSAVLSSNPRVIQLAARFNF"
     gene            1202..1798
                     /locus_tag="VIJ87_10680"
     CDS             1202..1798
                     /locus_tag="VIJ87_10680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444916.1"
                     /translation="MSNQMRFQLLLVCLSLTAFLSLVQGQGRGVNAERARVIERAEMD
                     RLLLWALPSNKESEATRLSRFKKIKDDFRDLQSLNNKMMADAWLQDALNYSAIAEMVS
                     KIQGKANDLKKSLSLPEAEKSETALTIPTVTTGRHFREELLLLDKTIMGFVTNPVFQA
                     ANTLDLNQAKKASNDLEQVLTLTDDLKQNAQRLRKATP"
     gene            complement(1927..>3528)
                     /locus_tag="VIJ87_10685"
     CDS             complement(1927..>3528)
                     /locus_tag="VIJ87_10685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444917.1"
                     /translation="VASASISPDGKYVAYSAQGDSGQSSLWVKYIATGSNVEIVPAAG
                     PDSLLGQFTVSPDGNHIYYLRNERGRASGVLYQVPVPGGTSKKVLENVSRISFSPDGK
                     RFAFVRRDLTQGEDAIIVVNADGTGEQKLATRKNPHYFLPGAAWSPDGQTIACPAGDA
                     NGDGYRSVALIQVSDGSQRQLTSHVWNDLQRIAWLSDGSGIMLTAQQERADQYQIWRV
                     SYPEGEAQTVTNDLSDYRNLSLTADSSALVALLYDRTANLSVATYGDWQNARQLTLGK
                     SNGGLGTIWTPDGKIVYNSSAGGNPDIWILDADGRNQKQLTDDAYAERALAVSPDGRH
                     LVFDSLRSGTLQIWTMDIDGSNAKQLTHSGNAFTPDFSADGQWVVYTTFVAGGFRIWK
                     VPIGGGEAVPVINKYVLTPAVSPDGKLIACYYQVEQTGASKIALFPFEGGEPVKLFDS
                     TQPAGATSAPVRWLPDGSAFSYISTRGGVSNIWLQPIDGGQPKQLTDFKSEVIFSFDW
                     SRDGKQLALSRGTENRDVILINNSR"
BASE COUNT          849 a          926 c          911 g          842 t
ORIGIN      
        1 aagcgcgtta tgtcggcacg cgaggcattc acctgttatc gcagaatcga atcaatcgcc
       61 aagctaaagt ggcaccggaa gacggtcgtc cgggattgcc gacattctta accgcaccat
      121 ctcaggcaac gcttaacgcc ttgagtctgg acttgactca aatcaacgcg cgttcaagct
      181 tcgtgtctcg atatgcgaat gccggtttca acggcgctag cgttgtggcg tttctttcaa
      241 acggaaattc tacctatcac ggtgcgtccg cccaggtcac caaacgcttt tctcaaggtt
      301 tccaaatgac cggtgcgtac acgttcagta agctaattga cgatacgaca gcggaagtat
      361 tctcaactgt actctcgcct cgacgcgtag aggatttcca aaacctacgt agagagcgcg
      421 cgacttccgc actcgaccac acgcacaggt ttgtgagttc tatgatttac gagttgcctt
      481 ggttctccaa gactactggt ctgacaaaga cgctgctggg cgggtttaac ctggctggaa
      541 cttacaccta tgaaactggt gagcgggtca cagtacgcag tgggaacgat gcgaatctta
      601 acggcgacaa tgccggggat cgcgcaatcc tcaatccagg tggaactgag ggcgtcggta
      661 gttcagtgac tccgctgtgc cgagtcaccg gcaattgcaa cgcagtcgga gctggagcag
      721 tcgttggata tctcgccaac aatccgaatg ctaagtacat tcaaactggt agcggcgctc
      781 aatccaccat cggccgcaat acgttcctgt taccgccgat taacaatgtc gatttttcgg
      841 ttttcaagaa cttcaagttt ggcgaatcat cgagatacat ccaaattcgc gctgacttct
      901 tcaacgtgtt caatcatccg cagtatgtac cgggttcagt taatagtgtg gatccggttg
      961 gtaccacggg gttgacaacg ctaaaccagg tgacaccgct tactcccgat ttcctgaacc
     1021 catccgcggt attgagcagt aatcctcggg tgattcaact tgcggcgcgg tttaatttct
     1081 aaccgagcca ctacaggcat ttcacatttg tcggggtggc gaagaaatct tcgccaccct
     1141 ttttgttctt gcagattggt cgagtgcatg gttaatctcc gcttccgaag ggagtgacga
     1201 aatgtctaac caaatgagat ttcagttact actggtttgt ttgtccttga cggcttttct
     1261 tagcttggtt caaggtcagg gtcgtggtgt taatgctgaa cgagctcgcg ttatagagcg
     1321 tgcagagatg gataggctgc tcctctgggc attaccctca aacaaggagt ctgaagcaac
     1381 tcggttaagt cgattcaaaa agatcaaaga cgatttccga gacttgcaat cgttgaataa
     1441 caagatgatg gctgatgcct ggctacaaga cgcactcaac tattctgcga tcgcggaaat
     1501 ggtttccaaa atccagggca aggctaacga cttaaaaaag agtttgtctt tgcccgaagc
     1561 cgaaaagtct gagacagctt tgacaatacc aacagtcact acaggtcgac actttcgcga
     1621 ggaacttttg cttctcgata aaacaataat gggatttgta actaaccctg tctttcaagc
     1681 ggctaacaca ttggatctca accaggctaa aaaggcgagt aatgatcttg agcaagtact
     1741 cacgctaacc gatgatctca aacagaatgc gcagaggttg cggaaggcga ctccctaacc
     1801 atctagccta aaaattccca aacagttggg atagcagctc cagtaactct tagtttatcg
     1861 gaagacgttt ttgcctcaat acaaagcgtc gaaaacttag caggccggaa aacggtaagc
     1921 gcgaaactat ctggaattat ttatcaagat cacgtcacga ttttcggtgc cgcgtgagag
     1981 cgcgagttgt ttcccgtcgc gcgaccagtc gaaggaaaag atcacttcgc tcttgaagtc
     2041 agtcaactgc ttaggctgtc cgccgtcaat aggctgaagc cagatgttgg agacgccgcc
     2101 acgggtgctg atgtaactga aggcgctgcc atccggcagc catcgtactg gggcactggt
     2161 ggctccggca ggctgcgtcg aatcaaagag ctttacaggt tctccacctt caaacgggaa
     2221 gagcgcaatc tttgaagctc cggtctgttc aacctggtaa taacaggcaa tcaacttacc
     2281 gtcaggtgag accgcgggag ttagcacgta cttattaatg accggcaccg cctcgccgcc
     2341 gccaataggg actttccaaa ttcggaaccc gccggccacg aacgttgtat aaaccaccca
     2401 ttgaccatcg gcggagaagt ctggagtaaa ggcattcccc gaatgggtta attgtttcgc
     2461 attactgcca tcaatatcca tcgtccatat ttggagtgtg cctgagcgca atgaatcaaa
     2521 cacgagatgg cgaccgtcgg gactgacggc gagagcgcgc tccgcgtaag cgtcgtcagt
     2581 caactgcttt tgattgcgtc cgtcagcatc aaggatccaa atgtcgggat taccgccagc
     2641 gcttgagtta taaacaatct tgccgtcggg cgtccaaatc gtgcccaagc ctccgttact
     2701 cttgcccaaa gtgagctggc gagcgttttg ccagtctccg tacgtcgcta ccgagaggtt
     2761 tgcagttctg tcatacagca gggcgacgag ggcgcttgaa tccgccgtca ggctgaggtt
     2821 gcggtaatcg ctcaggtcat tggttactgt ctgcgcctcg ccctctggat aggacacgcg
     2881 ccagatttgg tattggtcgg cccgctcctg ctgcgccgtg agcattattc cgctcccgtc
     2941 agacagccac gcgattcttt ggagatcatt ccagacatga gaagtgagtt gacgctgcga
     3001 gccgtcagac acctggatga gtgcgacgct ccgataaccg tcgccgttgg catcccctgc
     3061 agggcaggcg atagtttggc cgtcgggcga ccacgccgcg ccgggcagga aatagtgcgg
     3121 gtttttacgt gtggcgagtt tctgttcgcc cgtgccgtcg gcattcacta ctattattgc
     3181 gtcttcgcct tgagttaggt cacgacgcac aaaagcgaaa cgttttccgt cgggcgagaa
     3241 gctaatccgg cttacattct ccagcacctt cttcgacgtg ccaccaggca ccggaacttg
     3301 atagagcact ccggaagcgc gacctctttc gttgcgaaga tagtaaatgt ggtttccatc
     3361 aggcgagacg gtaaattgtc ctaagagact atctggccct gccgcaggaa cgatttccac
     3421 gttgctgccc gtggcaatgt actttaccca aaggctcgac tgacccgaat caccctgcgc
     3481 cgaataagcc acgtatttgc catcgggcga aatggacgca ctggcgac
//
LOCUS       DATCGC010001100         1819 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_182825, whole genome shotgun sequence.
ACCESSION   DATCGC010001100 DATCGC010000000
VERSION     DATCGC010001100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1819)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1819)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1819
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_182825"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            36..290
                     /locus_tag="VIJ87_10690"
     CDS             36..290
                     /locus_tag="VIJ87_10690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444918.1"
                     /translation="MNSTGSKAIIVSVGFLLLFGVFGRSVAQEPLLFDLKRVADRPPP
                     DVEKILGKPSKLVDDVFRGSRGSTYPATRAAYMNGAIEVV"
     gene            356..1669
                     /locus_tag="VIJ87_10695"
     CDS             356..1669
                     /locus_tag="VIJ87_10695"
                     /inference="COORDINATES: protein motif:HMM:NF033593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ISNCY family transposase"
                     /protein_id="HEY5444919.1"
                     /translation="MRKVISQQMSFGDGFIDASLYELDEELKKVDELLGDAKLLKPFE
                     EVFDDSMGRPGTAVGIYLRMMYLKFRWGLSYEEVEAEVGERLPWRYFCHLSLMDSVPD
                     ATTLIKLNQRFGEERMTELNRLLIKSLVKTRSIKPRRIRIDSTTLEAHIAYPSDIGIL
                     HQAVRTLTRTANSLGQKIVNHVRGTKRALARWGQSSKAKPKQRKAHGKKVLKKVTQLA
                     TDTVEHSRQAFEKLSKSAPAPLKEKFMAQIGLAKELLEQTEKKLAGQRSIRERIVSFF
                     DPHARAIVKGKLDKPVEFGRTMELVQDDSGVIVHYEVHQGNPSDKVHLLSLVRQTKKV
                     LNQSPQELAADRGFYSAQNLRKLRRLKVRRVGIPKIGRLTPSETQHQRTQWFRELQRF
                     RCGIEASISMLKRQFGLGKVLARGSPATAIWTGWAIFAYNLWQQT"
BASE COUNT          462 a          452 c          483 g          422 t
ORIGIN      
        1 gtcgaatgat ttgaacggtg aaagggatgg aataggtgaa ttctacaggt tcgaaagcaa
       61 tcatcgttag cgtcggattc ttgcttctat ttggcgtgtt tggccgttcc gtggcgcagg
      121 aaccgctcct cttcgacttg aagcgggtgg ccgataggcc tcctccagat gtggaaaaga
      181 ttttaggaaa accatccaag cttgtggatg atgtttttag aggcagccga ggcagtacct
      241 atccagcaac aagggccgcc tatatgaatg gggcaattga ggttgtctaa ttagttctca
      301 ctgaaaaagt cagaattttc ttgggtctga gaagagggtt gatgtaaaag aagtcatgcg
      361 caaagtgatt tctcagcaga tgagttttgg cgacggtttt atcgacgcct cgttgtacga
      421 gttggatgag gagctcaaga aagtcgacga gcttttgggg gatgccaagc tgctcaagcc
      481 cttcgaagaa gtcttcgatg atagcatggg ccgccccggc acagcggtag ggatctatct
      541 gcgcatgatg tatctgaagt tccgctgggg gctgagttac gaagaagtcg aggctgaagt
      601 tggggaaaga ctgccgtggc gctacttctg ccatctttcg ctgatggact cggtgcccga
      661 cgccaccacg ttgattaaac tcaaccagcg attcggcgag gagcgaatga ccgagctcaa
      721 ccgcctgctc atcaaatcgc tggttaagac tcgctcgatc aagccgcgcc gcattcgtat
      781 cgattcgacg actctggaag cccacatcgc atatcccagt gacatcggaa tcctgcatca
      841 agcggtgaga acgctcaccc gcacggctaa ctctttgggc caaaagatag tcaatcacgt
      901 gcgtggcacc aagagagccc tggcccgttg gggccaaagt tccaaagcca aacctaaaca
      961 gcgtaaggcc cacggcaaaa aagtgctcaa gaaagtcacc caactggcta cggacactgt
     1021 ggagcacagt cgtcaagctt ttgagaaact ctcgaagtcg gctcccgccc cactcaaaga
     1081 gaagtttatg gcgcagatcg ggttggccaa agaactgctt gaacagaccg agaaaaagct
     1141 cgctgggcaa agatcgattc gcgagcggat tgtttcgttt ttcgatcctc atgcccgggc
     1201 tattgtgaag ggaaaactcg ataagccggt cgaatttggt cgtacgatgg agttggtgca
     1261 ggacgactct ggggtgatcg ttcattatga agtccatcag ggtaatccca gcgataaagt
     1321 ccatctgctt tctttagtcc gccaaaccaa aaaggttctc aatcaatcgc cgcaggaact
     1381 tgccgcggat cgaggattct acagcgcgca gaatttgcgt aagcttcgac gtcttaaagt
     1441 acgccgagtg ggcatcccga agatcggtcg gctcacgccc agtgaaaccc aacatcaacg
     1501 cacccaatgg tttagagaac tgcagcggtt tcgttgcggg atcgaagcct ccatcagcat
     1561 gcttaaacgt caattcggtc tgggcaaagt gttggccaga ggctcgccgg ccaccgccat
     1621 ttggaccggc tgggcgatct ttgcctataa tctctggcaa caaacctgaa atgcgactga
     1681 taccgaacat cgacttaatc tctgaacaaa acctctatac ttcagggcaa atttgaaact
     1741 ctcaaactgt actttttcag tgagaactat ctagcccctg tatttccctg ctctgggtca
     1801 gtcccttcac ttcaagaat
//
LOCUS       DATCGC010001101         1276 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_84442, whole genome shotgun sequence.
ACCESSION   DATCGC010001101 DATCGC010000000
VERSION     DATCGC010001101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1276)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1276)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1276
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84442"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..671
                     /locus_tag="VIJ87_10700"
     CDS             <1..671
                     /locus_tag="VIJ87_10700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444920.1"
                     /translation="AIQKERHGIGIPDVEIQAGASTQDKKLAHEMARNLRTNEYSYIV
                     RPPSLKVGFAKPEGNLVNALESVSHHDDMIMKNILVQFLNMGLGSGGGGRATSATAAD
                     IFLKAMSYIANMWCQTLNLYLIPRLVAYNFLTDKFPKLSVKNIGETKDFQMWSAGMRN
                     LVDAGLITYSHETEQYVRKVSDVPVRTAPVTPEELAITAGSAITGGGESSGNVGKSDT
                     SGAV"
     gene            671..>1276
                     /locus_tag="VIJ87_10705"
     CDS             671..>1276
                     /locus_tag="VIJ87_10705"
                     /inference="COORDINATES: protein motif:HMM:NF021627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage protease"
                     /protein_id="HEY5444921.1"
                     /translation="MPWIVKPEGDQFCVFKKGGGKVKCHKTRKEATAHMRALYANSKE
                     FSEAAEGLLTMLRPLRFSEEEVQGQKLTKWIQAFPYGSWDHPIYGMTYFGKHNAETMK
                     QNFSEKVHGKDILNTDYEHGLDVSKGTKASGAILDMEVRDDGMWWLVEFTPTATKEIE
                     DGEWNYFSPEYYEVYENHMNGEIHADVATGGALTNKPWIKGM"
BASE COUNT          326 a          313 c          346 g          291 t
ORIGIN      
        1 acgctattca gaaagagcgt cacggtatcg gcatccccga cgttgaaatc caggccggtg
       61 ccagtacaca ggataagaag ctcgcacacg aaatggctcg taacctccgc accaacgagt
      121 acagctacat tgtgcgtcca ccttctctta aggtcggatt cgctaagccc gaaggaaact
      181 tggttaacgc cttggaatca gtctcgcacc acgacgacat gattatgaag aatatcctcg
      241 ttcagttcct caacatggga ctcggcagcg gtgggggcgg tagagccaca agcgccacag
      301 cggcggatat cttccttaag gccatgtcgt acattgcgaa catgtggtgt cagacactca
      361 acttgtacct tatccctcgt ctagttgctt acaactttct gacggataag ttcccgaagc
      421 tctctgtcaa gaacattggc gagactaagg actttcagat gtggtctgct ggtatgcgta
      481 acttggtcga tgctggcctt attacctaca gccacgaaac tgagcagtac gtccgtaaag
      541 tctcggacgt tcctgttcgc actgctcccg ttacgccgga agagttggct atcactgctg
      601 gtagtgcaat taccggcggt ggcgagagta gtggtaatgt aggcaagtcc gacacgtcag
      661 gagccgtgta atgccctgga tcgttaagcc cgaaggtgac cagttctgcg tgttcaagaa
      721 gggtggcggc aaagtcaagt gccacaagac gcgcaaagag gccaccgctc atatgcgtgc
      781 tctgtacgca aacagcaagg aattctcaga agccgctgaa ggtctgctta ctatgcttcg
      841 accccttcga ttctcggaag aggaagtaca gggtcagaag cttactaagt ggattcaagc
      901 gtttccgtac ggtagttggg atcatcccat ctacggtatg acttacttcg gtaagcacaa
      961 cgcggaaacg atgaagcaga acttcagtga gaaggtgcat ggaaaagata tcctgaacac
     1021 ggactatgag cacggtctgg acgttagtaa gggtacgaag gcttctggcg ctatccttga
     1081 catggaagtt agggacgatg gtatgtggtg gctcgttgag ttcactccta ccgctaccaa
     1141 ggaaatcgag gatggtgagt ggaactactt tagtcccgaa tactacgaag tctacgagaa
     1201 ccacatgaat ggtgagattc acgccgacgt tgctactggc ggcgctctta ccaataaacc
     1261 gtggatcaag ggcatg
//
LOCUS       DATCGC010001102         1129 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_148593, whole genome shotgun sequence.
ACCESSION   DATCGC010001102 DATCGC010000000
VERSION     DATCGC010001102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1129)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1129)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1129
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148593"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1129
                     /locus_tag="VIJ87_10710"
     CDS             <1..>1129
                     /locus_tag="VIJ87_10710"
                     /inference="COORDINATES: protein motif:HMM:NF026288.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5444922.1"
                     /translation="AVKDASQEKRIGALKNHAWALDTLGSVHNEFGDRKKAVELFSQA
                     LSIRKQANDRPGTIATLNSLAIVYEDMGDPRKALEFLIQIGDLLRDLGDPEKESDFLN
                     NMCVVYENIGEYAKSIEYCNQALSIRREMEDEPGAANILNSLGNAYGDMGEYERALEL
                     YNQSQVLYAKFGSDSGQGIEFNNLGWLYAALGDYEKAIQFYNKSFEIFRKLGNQSRQG
                     YALGNIAANYRDIGDFKKALEVNQEVLKLRIAASDIEGEAVTYNNIATCYSRLGEKQK
                     AIDYCKRSIEIHRKTNPRQLASALRNLGSVYRELGETQNATESLNEALEITRRIGDPA
                     GEAGTLSLLAQVERDQGKLLDAKLHVEAALASVESTRVSLKD"
BASE COUNT          328 a          251 c          288 g          262 t
ORIGIN      
        1 tgcagtcaaa gacgcgagcc aagagaagcg catcggagcc ttgaagaatc atgcgtgggc
       61 gctggacacg ctcggttcag ttcataatga atttggtgat cggaagaaag cagtcgaact
      121 gtttagtcaa gccctctcaa tccgaaaaca ggcaaatgat cggcccggta ccattgctac
      181 cctcaacagt cttgcaatcg tgtatgaaga catgggcgac ccgcggaagg cgctcgagtt
      241 tcttattcag attggtgact tactaagaga tttaggtgat cccgaaaagg aatcagattt
      301 cctaaacaac atgtgcgtgg tttacgagaa catcggtgag tacgccaagt cgattgagta
      361 ctgcaatcaa gcgctttcaa ttcgacgtga aatggaggat gaacctggtg ccgcgaatat
      421 tctcaatagt ttgggcaacg cttatgggga tatgggtgag tacgagcgtg ccctggaatt
      481 atacaatcaa tcgcaagtgc tttacgcaaa gttcggaagc gattctggcc agggaatcga
      541 gttcaacaat ctaggctggc tttacgcagc cttgggtgat tatgaaaagg cgatccaatt
      601 ctacaataag tcattcgaaa tatttcggaa gctgggcaat caatctcgcc agggttatgc
      661 gctcggcaac atcgccgcta attatcggga catcggagac tttaagaagg cattagaggt
      721 caatcaggag gtgttaaagc ttcgcattgc tgcaagtgat atcgaaggcg aagcggtcac
      781 ttacaacaat atagccactt gttattcacg tcttggcgag aaacagaaag ccattgacta
      841 ctgtaaacga tctatagaaa ttcatcgtaa aacaaatcct cgacaacttg cctcagcatt
      901 aagaaacctc ggatccgtct atcgcgagtt gggcgaaacc cagaacgcaa ccgaatcact
      961 aaacgaggca ttggagatta ccaggcgaat aggtgatccg gctggagaag ccggaacctt
     1021 atcgctactg gcccaggtag aacgtgatca aggcaaattg ctcgatgcga aacttcacgt
     1081 tgaggctgca ttagcttccg ttgagtctac acgcgtcagc ctcaaagat
//
LOCUS       DATCGC010001103         1556 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_413650, whole genome shotgun sequence.
ACCESSION   DATCGC010001103 DATCGC010000000
VERSION     DATCGC010001103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1556)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1556
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_413650"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(176..1312)
                     /locus_tag="VIJ87_10715"
     CDS             complement(176..1312)
                     /locus_tag="VIJ87_10715"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HEY5444923.1"
                     /translation="MRINIIGGGPAGLYFAILMKKADPKRQITIYERNGPDDTFGWGV
                     VFSGKTLANLRAADEESHAAITNQFEAWDNVDIVHRDEKISIHGNSFSGIARLQLLKI
                     LQHRAEQLGVEVVFRTEIADVETLRSQCDLLVAADGVNSGVRSRYAEQLQPSLDVRAH
                     RYIWYGTNQLFHGLTLTFRENEDGVFAAHSYKFNKTTSTFIVECDPETSRRANLEAKS
                     DEETRRYIAKVFERDLAGHPLLSNNSKWINFVLVKNANWFFENLILLGDALHTAHFSI
                     GSGTKLAMEDAIALAECFQTTSDVTKVLSKFTEVRRPVIEDYQAAAFESMVWFENAAK
                     YVSLAPIDLAFSAMMRSGRVSYEDLKKRAPEFIERYEAATGFHG"
     gene            complement(1339..>1556)
                     /locus_tag="VIJ87_10720"
     CDS             complement(1339..>1556)
                     /locus_tag="VIJ87_10720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444924.1"
                     /translation="DTSQQAQRKQYEMMSQLSPTQRLKLAFDLTESTRKLVIADLRHR
                     YPEADEVSIPRGGVIRACGFVPLTEEY"
BASE COUNT          364 a          407 c          392 g          393 t
ORIGIN      
        1 gatcaagcgc atcgtcccgt gacgtgcaaa ctttgggatc gggtggatct tgaagagcct
       61 ggattggcca ctgtggacga aggacgtcga cgattagaac cgcctgcgtg gaaaccggat
      121 tagccacaga tcaaacagat aagcgagaat ttgaaaaggt tctcatgatc tgtgttcatc
      181 cgtgaaaacc tgttgcagct tcatatcgct caataaactc cggcgcgcgc tttttgaggt
      241 cctcataact aacgcgtccg cttctcatca tcgcgctaaa ggctaaatca atcggagcaa
      301 gcgacacgta ctttgcagca ttttcgaacc acaccatgct ttcaaaagcg gcggcctggt
      361 aatcttcaat aaccggacga cgtacctcgg tgaacttcga caacaccttg gttacatcac
      421 tcgtagtttg gaaacactcg gccaacgcaa tcgcatcttc catcgcaagc ttggtccccg
      481 agccgatcga aaagtgggca gtgtgcaaag cgtcgccaag caaaatcagg ttttcgaaaa
      541 accaattggc gtttttcact aggacgaagt tgatccactt ggaattgttc gagagtaaag
      601 ggtgtcccgc cagatcccgc tcgaagacct tggcgatgta gcgacgtgtc tcctcgtctg
      661 atttggcttc gaggttagcc cgcctcgacg tctccggatc gcattccacg atgaacgtgc
      721 ttgtcgtttt gttgaacttg taagagtggg ccgcgaacac tccgtcttcg ttttcccgga
      781 aggtcagcgt caaaccatga aacaattggt tggttccgta ccagatataa cgatgtgcgc
      841 gcacatcaag actcggctga agctgctcag cgtatctact cctcactccg ctattcacgc
      901 catcagcggc gactaacaaa tcgcactgac tgcgtagtgt ttcgacgtcg gcaatctcag
      961 ttctgaagac gacttcaacg ccgagttgtt ccgctcgatg ctgcaaaatc ttgagaagtt
     1021 gaaggcgcgc tatacctgag aagctgtttc cgtgaatcga gatcttttcg tcgcggtgaa
     1081 caatgtcgac gttgtcccac gcttcaaact ggtttgtgat cgccgcgtgg gattcttcgt
     1141 cagcggcccg aaggttagcc agtgtcttgc cagaaaacac gacaccccaa ccgaaagtgt
     1201 cgtcgggacc attgcgttcg tagattgtga tttgacgttt cgggtcggcc tttttcatga
     1261 ggatggcgaa gtacaaaccc gccgggccac caccgatgat gttgattctc atcccgtaag
     1321 tcttattcca cttccagctc agtattcctc tgtgagaggg acgaagccac aggcacgaat
     1381 cacacctcca cgaggtattg agacctcgtc tgcttctgga tagcggtgtc tgagatcagc
     1441 aataaccagc tttcgtgttg attcggtgag atcgaaagcg agctttagtc tttgagtcgg
     1501 tgataactga ctcatcattt catattgctt gcgctgcgct tgctggctag tgtccg
//
LOCUS       DATCGC010001104         1148 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_413691, whole genome shotgun sequence.
ACCESSION   DATCGC010001104 DATCGC010000000
VERSION     DATCGC010001104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1148)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1148)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1148
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_413691"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            21..>1148
                     /locus_tag="VIJ87_10725"
     CDS             21..>1148
                     /locus_tag="VIJ87_10725"
                     /inference="COORDINATES: protein motif:HMM:NF017722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004062 - aryl sulfotransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase"
                     /protein_id="HEY5444925.1"
                     /translation="MLEVDGSDGRVLKTFNMAQIIRAAMVAGGDDPNQFVFPTPTDWF
                     HNNGAAYNRADDSLIVSSRENFVICLDYETRAIKWILGDPTKKWHQFASLRKFALAIA
                     PGSLPPIGQHAPSITFDQNLMVFDNGAPSVFQRPPGNYRNYASPRKYTLDLVGKVATE
                     VWNYPANQNIHCPICSSVYEDAPYNYLIDYAFVNGGPPNVPTFAQLMGLDTAGERIFY
                     YQYATQGCNTAYNSTPIHLENTKFPSVGPQPLNLSTRGMVSEGDNVVIGGFIITGTEP
                     KTLVLRALGPSLSGFGLSSVVMDPVLRVYNSSGTLIASNDNWQSDPNHFVVEANGLTP
                     PNVLESATAQTLAPGAYTVIVRGKQVTPGIGLVELYDLSPVS"
BASE COUNT          269 a          304 c          289 g          286 t
ORIGIN      
        1 cttcctactt cgagtccaca atcctggaag ttgatggttc agacggcagg gttctgaaga
       61 catttaacat ggcgcagatc attagggctg ccatggtcgc tggtggagac gatccgaatc
      121 aatttgtctt cccgacgccg accgattggt tccataacaa cggtgccgca tacaaccggg
      181 ccgacgactc tctgatcgtt tcaagtcggg aaaattttgt tatttgcctt gattatgaaa
      241 cacgcgctat caaatggatc ctgggggatc cgacgaaaaa gtggcaccag ttcgcctctc
      301 tgaggaaatt cgcgctcgcc attgcgcccg gcagcctgcc acccatcggc caacacgctc
      361 cttcgattac ttttgatcaa aatcttatgg tttttgataa tggcgctccg agtgtttttc
      421 agaggcctcc agggaattac cgcaactacg cgagtccccg caagtatacg ttggatctgg
      481 taggaaaggt agcgactgaa gtgtggaatt accctgcgaa ccagaacatc cactgcccga
      541 tctgctcaag cgtctatgag gatgccccgt acaactatct aattgattat gcgttcgtta
      601 atggtggacc gccgaacgtt ccaacgttcg cccaacttat gggcctggat actgccggcg
      661 aaaggatctt ctattatcaa tatgcaaccc aaggttgtaa cactgcatat aactccactc
      721 cgattcatct agagaacacg aagttcccga gcgtaggccc tcaaccgctc aatctctcta
      781 ctcggggcat ggtttcagaa ggtgataacg ttgtgattgg tggctttatc atcactggta
      841 ccgagcctaa gacgttagtg cttcgcgcgc tggggccgtc gctcagcggc tttgggctat
      901 ccagcgtagt gatggatccg gttctgaggg tatataactc ttccggcact ctgatagcaa
      961 gtaacgacaa ctggcagtcc gatccaaacc actttgtagt agaagccaac ggacttacac
     1021 cgcctaatgt attggaatca gccactgcgc agactttggc gccgggcgcc tacaccgtga
     1081 tagtcagggg aaagcaagtg actccgggta ttggcttggt cgagctttac gatctctcgc
     1141 cggtatcc
//
LOCUS       DATCGC010001105         1301 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_50499, whole genome shotgun sequence.
ACCESSION   DATCGC010001105 DATCGC010000000
VERSION     DATCGC010001105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1301)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1301)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1301
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50499"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..703
                     /locus_tag="VIJ87_10730"
     CDS             <1..703
                     /locus_tag="VIJ87_10730"
                     /inference="COORDINATES: protein motif:HMM:NF024117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEY5444926.1"
                     /translation="FALVDEVLERLAAEYEDRLAPAIPRVWEDSINSIRMDLREWLRR
                     MAEDNGGWIPDKFELSFGLSDRGPRASDPASVDDPVEITGDLRLRGSIDMVERQGTDR
                     YRVTDHKTGKARADKDTIVGGGKYLQPLLYALACQKLLNATVDSGRLYYCTADGGYEE
                     RVVRLDDESTDIINSVLSTIRQGLVDGFLPAAPDKDACMWCDFLALCGNFEEQRVKNK
                     PRERLIQIKALRDLP"
     gene            700..>1301
                     /locus_tag="VIJ87_10735"
     CDS             700..>1301
                     /locus_tag="VIJ87_10735"
                     /inference="COORDINATES: protein motif:HMM:NF012789.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HEY5444927.1"
                     /translation="MIKKKPLADQESRDRICTDLDTTLIVEAAAGTGKTSALIGRILS
                     GIVSGKLSLAKTVALTFTEFAAGELKLRLRKEIEEARQSQTSDDARELFKKAIEELEE
                     ARVGTIHSFCADLLREHPVEAGIDPLFEVAPEDMTSPIFEVAFERWFEQQLANPGEGV
                     RRILRRLPRREFGGKRTATLASRPPGTGPKPMLRRAVLDLV"
BASE COUNT          332 a          308 c          379 g          282 t
ORIGIN      
        1 attcgcgctg gtggacgaag tgctcgaacg tttagcggca gagtatgaag acaggttggc
       61 gccggctatt ccgcgtgtgt gggaagacag cattaacagt atacggatgg acctgcgtga
      121 gtggttgaga agaatggcgg aagacaacgg tggctggata cccgacaagt ttgaattgtc
      181 gtttggcttg agcgatcgcg ggccacgcgc atcggatccg gcgagcgtcg acgacccggt
      241 tgaaattact ggtgatctaa gactgcgtgg atcgatcgac atggtcgagc gccagggcac
      301 agacaggtat cgtgtcaccg accacaaaac cggaaaagca cgcgcagaca aagacaccat
      361 tgttggtggg ggcaaatatc tgcagccgct gttgtatgca ctcgcatgtc agaagttact
      421 gaacgccaca gttgattcgg gacgcctcta ctactgcacc gctgacggtg gttacgaaga
      481 acgcgttgtt cgcctcgatg acgaaagtac agacattatc aattcagtgc ttagcacgat
      541 tcgacaaggg ctggttgatg gatttcttcc ggcagccccc gacaaagatg cgtgcatgtg
      601 gtgcgacttc ctcgcattgt gcggaaactt tgaagagcag cgagttaaga ataaaccgcg
      661 cgaacgactt atccagatca aagcgttgag ggacctgcca tgatcaaaaa gaaacctctc
      721 gcagatcagg agtctcgcga ccgtatttgt accgacctcg acactacgct aatcgtcgaa
      781 gccgcggctg gtaccggaaa gacaagtgcg ctgattggtc gaatcctatc cggtatcgtc
      841 agtggcaaac tcagtttggc gaaaacagtt gctttgacgt ttaccgagtt tgcggccggt
      901 gaactcaaac ttcgcttacg aaaagaaatc gaagaggcac gacagtcaca aacatcggat
      961 gacgcgcggg aactttttaa gaaggctatc gaggaactcg aagaagcacg agtcggaacc
     1021 attcactcgt tttgtgcaga tcttcttcgc gaacatccgg ttgaggccgg aatcgatcca
     1081 ttgtttgaag tcgcaccgga agatatgact tcgccaattt ttgaggtcgc ttttgaaaga
     1141 tggtttgagc aacagttggc gaatcccggt gaaggtgtgc ggcgcattct caggagactt
     1201 ccacgtcggg agtttggcgg aaaacggacg gcaacattag ctagtcggcc gccaggtacc
     1261 gggcccaaac caatgttgcg aagagcagtg ctcgatctgg t
//
LOCUS       DATCGC010001106         1062 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_282601, whole genome shotgun sequence.
ACCESSION   DATCGC010001106 DATCGC010000000
VERSION     DATCGC010001106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1062)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1062)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1062
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_282601"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            219..>1062
                     /locus_tag="VIJ87_10740"
     CDS             219..>1062
                     /locus_tag="VIJ87_10740"
                     /inference="COORDINATES: protein motif:HMM:NF026257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEY5444928.1"
                     /translation="MFDAERFNILRSSAEAELLVHCTRLDIDPTRAKRIHALLELEID
                     WTKLFSLAQRNALIPLLYFQLNKIAPSLVPSDRLKELNDRFQDNSALNTLLTAEMILL
                     VDLFEQNQIPAIPYKGPAIGAGVYGQAALRQFADLDILVRETDVWKATDLLLDRGYKA
                     HFVIPAKRRSAFIRLSYVRSFNRDSTTVELHWRLAPRFFGPHFDTSKLWERTRKIPLQ
                     GSCVRIPFSDDLILMLCIHGAKDCWEKLEWVCGLAEVVRTDPELDWDDLLERAKDAQA
                     VGVVS"
BASE COUNT          266 a          251 c          274 g          271 t
ORIGIN      
        1 tgtgatggtc gctgctgcta tcgggctgct tgtgacttgg ggagattaga tgagcccagg
       61 tagttttagt gaagtccgca agagctaacg agacggcgtg tgataggcta acgttcacac
      121 aatcttttgt cggttgtttc agaatccgat aagaagttga ccgggaaacc ggaactgctc
      181 atggtgagca tagatcaaac cgcaaatcac tctagctaat gtttgacgct gagcgtttca
      241 acattctccg gtcaagtgcc gaggcagaat tgttggtgca ctgtactcgg ttggatatcg
      301 atccaaccag ggccaaacga atccacgcac tactcgaact cgagattgat tggacaaagc
      361 tgttttcctt agcacaacgt aacgccctta tcccactgtt atattttcag ctcaacaaga
      421 ttgcgccttc actggtcccg tcagatcgac ttaaagaatt gaacgatcgt tttcaagaca
      481 acagcgcgct aaacacttta ctaacggctg agatgattct tttggtcgat ctctttgagc
      541 agaatcaaat acccgctatc ccctataaag gaccggccat cggagctggc gtctatggac
      601 aggcagcgct aagacagttc gcagatctcg atatcctggt acgcgagacc gatgtctgga
      661 aagctactga tctcctcctg gatcgaggtt ataaggccca ctttgtgata ccggccaaaa
      721 gacgatcggc gtttattcgc ctgagctacg ttaggtcatt caatcgagac agcaccacag
      781 tagaactaca ttggcgattg gcgccgcgtt tctttggacc gcactttgac acttcaaaac
      841 tctgggagcg aacgcgaaag attccgctac agggttcatg cgtccgaatt ccattttcag
      901 atgacttgat cctgatgctt tgcattcatg gggcaaagga ttgttgggaa aagttggagt
      961 gggtttgcgg gctggcagag gtcgtgcgca cagatccgga gcttgattgg gacgatttac
     1021 tcgagcgcgc aaaagacgct caagcagtcg gcgtagtttc at
//
LOCUS       DATCGC010001107         1226 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_84528, whole genome shotgun sequence.
ACCESSION   DATCGC010001107 DATCGC010000000
VERSION     DATCGC010001107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1226)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1226)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1226
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84528"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..203
                     /locus_tag="VIJ87_10745"
     CDS             <1..203
                     /locus_tag="VIJ87_10745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444929.1"
                     /translation="PNKDGQGIKANGFVGVVDVSYCMPTTAAAGVPSGASLFAGQIQL
                     NTTTFELYRALEKGTTTWAKLN"
     gene            203..>1226
                     /locus_tag="VIJ87_10750"
     CDS             203..>1226
                     /locus_tag="VIJ87_10750"
                     /inference="COORDINATES: protein motif:HMM:NF016359.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit"
                     /protein_id="HEY5444930.1"
                     /translation="MARVRTVQVAERPELLLKENSLQDKFLHSRAKVQIYGGGFGNGK
                     TTAAVIKALQLADMYPGSTGLISRSTYPKLNDTIRKEFLKWCPPKWIVSFSTGQNGDN
                     ICHLKNGTTVYFRYIAQQGTKTESSSSNLLSATFDWVIVDQVEDPEITHKDFLDLFGR
                     LRGRARYIGEDATMPVTGPRWMMLTCNPTGNWVYTKLVRPLQQYKATGVVTDDLICAR
                     DIDRKPVLGEDGKPQLLIEVVEGSTYELRHVHEAEGGDFIQTLETMYQGQQRDRFLLG
                     RWVAYEGLVYPQYDTSVHLLQEGDIHALLDAYVETHYHPTWIEGYDYGQAQPSCYGLA
                     FVTPEQH"
BASE COUNT          310 a          309 c          317 g          290 t
ORIGIN      
        1 taccgaataa agacggccaa ggtatcaaag ccaacggctt cgtcggtgtg gttgatgtga
       61 gttactgcat gcctaccact gccgctgcag gtgtgcctag tggtgcatcg ctgttcgctg
      121 gtcagataca gttaaacact acaacctttg aactctaccg tgccttggag aagggcacaa
      181 ctacatgggc taagctcaac tgatggcgcg tgtacgcact gtacaagttg cagaacgtcc
      241 tgagttgctg ttgaaggaga acagcttgca ggacaagttc ttgcactcac gcgccaaggt
      301 gcaaatctac ggcggtggct ttggcaatgg taagactact gcagccgtta tcaaagcact
      361 acaactcgct gacatgtacc ccggtagcac tggtcttata tcacgttcta cctatccgaa
      421 actaaacgac actatccgca aagagttcct caagtggtgt ccccccaagt ggatagtgtc
      481 gtttagcaca ggacagaacg gtgacaacat ctgccatctc aagaacggca ccactgtgta
      541 cttccgttac attgcacagc aagggacaaa gactgagagc agtagttcta acttgctctc
      601 agcgacgttc gattgggtca ttgtagatca ggttgaagac cctgaaatca cacataagga
      661 cttcctcgac ttgttcggtc gcttgcgtgg tcgcgctcgt tacattggtg aagatgctac
      721 gatgcctgtc actggcccac gttggatgat gttgacatgc aatccaactg gtaattgggt
      781 ctacaccaaa ctcgtgcgcc cactgcaaca gtacaaagca actggcgttg tgactgacga
      841 cctcatctgc gctcgtgaca tagaccgtaa gccagtactc ggtgaagatg gcaagccgca
      901 gttgttaata gaagttgtcg aaggcagcac ctacgagtta cgccatgtgc atgaagctga
      961 aggcggtgac ttcatccaaa cccttgaaac gatgtatcaa gggcagcaac gtgatcgttt
     1021 cttgctcgga cggtgggttg cgtatgaggg tttggtgtac ccccaatacg atacgtctgt
     1081 acatctactg caggaaggcg acatacacgc tctgttggat gcgtatgtag agacacacta
     1141 ccaccccacg tggatagaag gctacgacta tggtcaagcg cagcctagtt gctacggtct
     1201 tgcgttcgtt acacctgagc agcatg
//
LOCUS       DATCGC010001108         1202 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_249263, whole genome shotgun sequence.
ACCESSION   DATCGC010001108 DATCGC010000000
VERSION     DATCGC010001108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1202)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1202)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1202
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249263"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..260)
                     /locus_tag="VIJ87_10755"
     CDS             complement(<1..260)
                     /locus_tag="VIJ87_10755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444931.1"
                     /translation="MDLSITVNGIKFPNPFLLGSGPPGTNARVLAKSYDAGWGGAVAK
                     TVSLESAKVVNVVPRYGKLRSRTTGEVIGFENIELISDRPIDV"
     gene            complement(396..>1202)
                     /locus_tag="VIJ87_10760"
     CDS             complement(396..>1202)
                     /locus_tag="VIJ87_10760"
                     /inference="COORDINATES: protein motif:HMM:NF012993.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HEY5444932.1"
                     /translation="IEEIKRLNIEKHLGFIEQAAKQGVQIICMQEVFTTPYFCAEQQT
                     RWYEAVEKIPDGPTVRLMQEVAKEHGMVIVVPIYEEEITGIYYNTAAVIDADGKYLGK
                     YRKNHIPHVNPGFWEKFYFRPGNLGYPCFDTAFARIGVYICYDRHFPEGARALGLNGA
                     EIVFNPSATVAGLSEYLWKLEQPAHAVANGYFIGAINRVGHEQPWDIGEFYGQSYFCD
                     PRGQLVAQAPRDEDALVVADLDLDQIREVRNTWQFFRDRRPDSYGALVAD"
BASE COUNT          300 a          326 c          279 g          297 t
ORIGIN      
        1 acatcgatag gccgatccga aatcagttcg atgttctcaa agccgataac ctcacccgta
       61 gttctcgagc gaagctttcc gtaacgcgga acaacattga cgactttggc tgactcaaga
      121 ctcaccgttt tggcgacggc accaccccaa cccgcgtcgt atgatttggc aagcacacga
      181 gcattcgttc ccggagggcc cgaaccaagc aggaaagggt ttgggaattt gattccgttg
      241 acggtgattg agagatccat ttaatgctcc tagatgtccg ataaacttca gtttgtcgcc
      301 gaccctgagt agcgggtcga aaacattcaa tcgattcggt tagttgccat ggtctaatct
      361 tgttgagtca gcgacaaact aaagtttatc ggacattaat cagctactaa agccccataa
      421 ctatccggtc gacgatcacg gaaaaactgc cacgtgtttc gtacttcgcg aatctgatcg
      481 agatccagat cagcgacgac taacgcgtcc tcgtcacgtg gtgcttgcgc caccagctgt
      541 ccacgcggat cgcagaagta actctgtccg taaaactcgc caatgtccca tggctgttca
      601 tgaccgacac gattgatcgc gccgatgaag taaccatttg caacggcatg agctggctgc
      661 tcaagtttcc ataaatactc cgacagaccc gcaaccgttg ccgatggatt gaaaacgatc
      721 tctgcaccat tcaaaccaag tgcgcgtgcg ccctctggga agtgacggtc atagcagatg
      781 taaactccga ttcgcgcgaa ggctgtatcg aaacacggat agccgagatt gcctggacgg
      841 aaatagaact tttcccaaaa gccgggatta acgtgtggaa tgtgattctt tcgatacttt
      901 cccagatact tcccatccgc atcaatcact gccgcagtgt tgtagtagat accggttatc
      961 tcttcttcgt agatcggaac gacgatcacc atgccatgtt ccttagccac ttcctgcatc
     1021 aggcgaacgg tcggtccgtc aggaatcttc tctacagctt cgtaccagcg tgtctgctgt
     1081 tcagcgcaga agtaaggcgt cgtgaaaact tcctgcatgc agataatttg cacgccttgt
     1141 ttcgcagctt gctcgatgaa tcccaagtgc ttctcgatat tcaaccgctt gatctcttca
     1201 at
//
LOCUS       DATCGC010001109         1137 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_449698, whole genome shotgun sequence.
ACCESSION   DATCGC010001109 DATCGC010000000
VERSION     DATCGC010001109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1137)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1137)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1137
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_449698"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..288)
                     /locus_tag="VIJ87_10765"
     CDS             complement(<1..288)
                     /locus_tag="VIJ87_10765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003215863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005694 - chromosome [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HEY5444933.1"
                     /translation="MTKAELVEDVARAAELTKKDAERLVEIVFESIIETLNQGEKIEL
                     RGFGSFRVRERGARRGRNPKTGDPVSIPAKRVPYFKPGKELKELINDENGTA"
     gene            complement(551..>1137)
                     /locus_tag="VIJ87_10770"
     CDS             complement(551..>1137)
                     /locus_tag="VIJ87_10770"
                     /inference="COORDINATES: protein motif:HMM:NF012784.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="S1 RNA-binding domain-containing protein"
                     /protein_id="HEY5444934.1"
                     /translation="GRVRNLTDFGAFIEIEDGVDGLVHVSDISWSRRIKHPSEVLKKG
                     QEIDAVITSIDSENRRLSLSIKDLEPNAWEKFTNEHKPGDVVHGKVARFANFGAFVEL
                     DDNLEGLCHISELSEERVNKPEDVVQLGQEMDFKILRIDTETKKIGLSARAVGKDEPI
                     IDTKIYSSEAGGGMASLGELADFFPPSKPDTNDE"
BASE COUNT          269 a          294 c          262 g          312 t
ORIGIN      
        1 cgccgtgccg ttttcatcat tgatgagttc cttgagttct ttgccgggtt tgaaataagg
       61 aacacgtttg gcagggatgc tgacaggatc acctgtctta ggattacgtc cacgtcgcgc
      121 gcctctttca cgcacccgaa agctaccgaa tccgcgcaac tcaatcttct cgccctgatt
      181 caaagtttca atgatgcttt caaagacaat ttcgactaaa cgttcagcgt ccttcttagt
      241 gagttctgcc gcacgagcta cgtcttcgac gagttctgct tttgtcatac atcacctcga
      301 ttgctcaaat gatggtctgg gctaaaccgt acaattcccg gataagatat ttaattaact
      361 tctaaatagt ggcgagataa gctagaccgt acactatcag aaaatgatct ggtcgggcaa
      421 gactctcatt gaatgcatct tacggttgcg aagcattcat ttggggcgtg attggaccta
      481 acaaattggc cctacatcaa acctatgcgg agtcagattt gatgcagggc cgtttggttt
      541 ctcaacgtat ctattcgtcg tttgtgtcag gcttgctggg ggggaaaaaa tcggctagtt
      601 caccgagtga cgccatgcca ccgccagctt ctgaagaata gatctttgta tcaatgatcg
      661 gctcatcctt gccaacggcc cgggcggaaa gaccgatctt cttggtctcc gtatcaatgc
      721 gcagaatctt gaagtccatc tcctgaccaa gttggaccac atcttccggc ttgttgaccc
      781 gctcctcgga gagctcagaa atatgacaaa ggccctcgag gttgtcgtcg agttcaacaa
      841 acgcaccgaa atttgcaaac cgtgcaacct taccatgtac cacatcgcct ggcttgtgtt
      901 cgttagtgaa tttctcccag gcgttgggct ccagatcttt gatggacagt gacagccgac
      961 ggttttcgct gtcgatgctg gtaattactg catcaatctc ctgccctttc tttagcactt
     1021 cacttggatg cttaattctt cgggaccagg aaatgtccga aacgtgcacc aagccgtcaa
     1081 caccgtcctc aatttcaatg aaggctccga agtcggtgag attgcggact cgaccat
//
LOCUS       DATCGC010001110         1414 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_449719, whole genome shotgun sequence.
ACCESSION   DATCGC010001110 DATCGC010000000
VERSION     DATCGC010001110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1414)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1414)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1414
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_449719"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            542..>1414
                     /locus_tag="VIJ87_10775"
     CDS             542..>1414
                     /locus_tag="VIJ87_10775"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HEY5444935.1"
                     /translation="MIIPTPAPRHTRGSIRRPQDPTGEETGVVRLDRNQRITPIADAI
                     VRELKNRLSATVIQSYPNPLPFRGSLSQSTGLSPPQIAVTAGADAAIRLIFQAFVRPG
                     DVVLLPTPTYSMYSTYIEIFEARHQPVPYGDDLKLDLQRFREELLYSPRLAVIANPDQ
                     PTGAVLPIAVIEEFAEIAARQGTLLLVDEVYFPFYPETALSCLKRFSNVALLRSFSKI
                     FGLAGLRLGFVASDENIIAAIEQVQGLHEVSSTALVAGDYVLKHSELIADYTREVEEG
                     RRVLQAAASTLGLTF"
BASE COUNT          352 a          363 c          334 g          365 t
ORIGIN      
        1 accgagtttg gcccagttgc ttctgagtgt tctgcaaccc ccggatggct acacattgac
       61 cggagtatag tgcaccacga attcgcagca gatagcgaag tccatccaac ccacgaactt
      121 gtgctctcat ccgtatccaa catggctatg ccactgctcc gctaccgcac cggagacatt
      181 gtccgagtcg aaaataatat gtgtatttgc ggttcagttg atcctcaagt atcaatgtct
      241 agtggcaggc tagtgccgac atttaaacgt agatctggac gattgttttc tccaacaatt
      301 ttcaatggcc tttcagcctc cctaccgatt gctaagtacc aagttattca agagaacatt
      361 aaccaactgg tggtattgat tcatccacga gtgggggccc tatcagacct aatagaaccg
      421 accttacgct acgttcaatg tgccagcagg aacgaattcg atgttcgggt gggtcatctt
      481 gaatcttaca gttcttcaaa ttttcagcgc tacaaatgca tgatctgaga aatgtaggag
      541 aatgatcatt cccaccccag ctcccagaca cacacgtggg tctattcgac ggccgcagga
      601 tcctactggc gaagagacag gtgttgttcg tcttgatcga aaccaacgga tcactccgat
      661 agctgacgcg attgtgcggg agctaaaaaa tagattgtct gcaacagtta ttcaatcgta
      721 tccaaatccg ctaccctttc gaggtagcct aagtcagtcc acaggacttt cgccgccaca
      781 aattgccgtc accgctggag cagatgcagc gatacgatta atctttcagg cattcgttag
      841 gccgggagat gtggtactac tcccaactcc cacatactcg atgtactcga cgtatattga
      901 gatatttgag gctcgccacc agccggttcc ctatggcgat gatttaaaat tagacctgca
      961 acgctttcgc gaggagctgc tctattctcc tcgtttggcc gtaattgcca accctgatca
     1021 gccaactggc gccgtattgc ctatcgcggt aattgaggag tttgcggaaa ttgccgcgcg
     1081 acaaggaacg ctcctcctcg tagatgaggt ctactttccc ttctatcctg aaacggcctt
     1141 gtcctgtcta aaaagattct ccaatgtcgc actactgcgt tccttctcca agatttttgg
     1201 gctagctgga ctaagattag gtttcgtagc gagtgacgaa aatatcatcg ccgcaataga
     1261 acaggtgcag gggctgcacg aagtcagttc aacggcgtta gtggctgggg attacgtcct
     1321 aaaacattca gagctaattg cggactatac gcgagaagtt gaagaaggac ggcgtgtgct
     1381 tcaggcggca gcgtctacac ttgggctcac tttt
//
LOCUS       DATCGC010001111         1742 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_348189, whole genome shotgun sequence.
ACCESSION   DATCGC010001111 DATCGC010000000
VERSION     DATCGC010001111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1742)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1742)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1742
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_348189"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1742
                     /locus_tag="VIJ87_10780"
     CDS             <1..>1742
                     /locus_tag="VIJ87_10780"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444936.1"
                     /translation="VIGYSQTPAPTKPDPLKALQWRSIGPYRGGRVDAVAGVATQPMV
                     FYYGATGGGIWKTTDGGINWEVISDGSVFGTGSVGAIALSDSDPGTIYVGMGESAIRG
                     NTSHGDGVYKSTDAGKTWKRVGLEDSRQISRIRVHPKNPDIVYVAAQGHVWGANEQRG
                     VYRSKDGGKTWERVLYKGDKAGACDLIMDPTNPSVLYAGLWEVYRKPWTLESGGPTSG
                     IFKSTDGGDTWTDITRNPGLPKGTIGISGVAVSPANSDRVWAIVEAEDGGVFRSENGG
                     RTWAKINEDRNLRQRAWYYTRIYADPKSADTVYVLNTGFYKSNDGGRTFGRIGTPHGD
                     NHDLWIAPDDPNRMIESNDGGSNVSFNGGRSWTDQDQPTAQFYRVALDNDFPYHVYGA
                     QQDNSTVRIASRNSEGGIGTSDWYDVGGGESGWIAPSPKDSEIVFAGSYGGLTTRYDH
                     RTGQQRDINPYPNNPMGAGADVLKYRFQWNFPIVFSPHDQNTLYLGANVLFKSMNEGQ
                     SWEIISPDLTRNDKSKQGSSGGPITKDNTSIEYYDTIFTVMESPLTAGTIWVGTDDGL
                     VQLSRDAGTNWTNVT"
BASE COUNT          449 a          434 c          488 g          371 t
ORIGIN      
        1 gttatcgggt actcgcaaac gccggcacca acaaagcccg atcctctaaa agcgcttcaa
       61 tggcgaagca tcggtccgta ccgcggtgga cgagttgacg cagttgccgg agtggcgacg
      121 caaccaatgg ttttttatta cggggcaacg ggtggtggca tttggaagac aacagatggt
      181 ggcatcaatt gggaagtgat ctcggatggt tctgtttttg gcaccggttc agtcggagcg
      241 atcgcgcttt ccgattctga tccgggcacg atctacgtcg gcatgggcga gtcggcgatt
      301 cgcggaaaca catcgcatgg cgatggagtt tataaatcga ctgatgcagg aaaaacctgg
      361 aaacgcgttg gactcgagga ctcgcgccag atctcgcgta ttcgggttca cccgaagaac
      421 cccgatattg tctacgtcgc agcacaaggc cacgtttggg gagcaaatga acaacgcggc
      481 gtttaccgca gcaaagacgg aggcaagacc tgggagcgag tgctttacaa aggcgacaag
      541 gcaggagcct gtgatttgat catggaccca acgaatccca gtgttcttta tgccggcctg
      601 tgggaagtct atcgaaagcc atggaccctc gagagtggtg gtcctacgag cggcatcttt
      661 aagtcaactg atggcggtga cacttggaca gacatcacgc ggaatcccgg actacctaaa
      721 ggaactattg gtataagcgg cgttgcggtt tcacccgcta attccgaccg tgtatgggcg
      781 attgtcgaag ctgaagatgg cggggtgttt cgttccgaaa atggtggccg tacgtgggcc
      841 aagattaatg aagatcgaaa cctgcggcag cgtgcctggt actacacgag aatctatgcc
      901 gatcccaaga gcgcagatac agtctatgtt ttgaatacag gattctataa atccaacgac
      961 ggcggcagaa cttttggtcg catcggtaca ccgcacggag acaatcacga tctttggatc
     1021 gcgccagacg atcccaaccg tatgatcgaa agtaatgatg gtggatcaaa tgtctctttc
     1081 aatggaggcc gtagttggac agatcaggat caaccgacag cacagtttta ccgagtcgca
     1141 cttgataacg acttcccgta tcacgtctac ggcgcgcagc aagacaactc gactgtccga
     1201 atcgcaagtc gaaacagcga gggcggcatc ggaacgagcg actggtacga cgttggtggt
     1261 ggtgaatcag gctggattgc gccgtcgcca aaggattccg aaatagtttt cgccggctcc
     1321 tacggtggac taacaactcg ttacgatcat cgcaccggtc aacaacgcga tatcaatccc
     1381 tatccaaaca atccgatggg cgccggtgct gacgtcttga agtacagatt ccaatggaac
     1441 tttcccatcg tgttctcgcc tcacgatcaa aacacgctgt acttgggagc gaatgtactt
     1501 ttcaaatcga tgaatgaagg acagagttgg gaaatcatca gtcccgattt gacgcgtaac
     1561 gacaaaagca aacaaggttc ttcaggcggt ccgattacaa aagacaacac gagtattgag
     1621 tactacgaca cgatcttcac ggtgatggaa tctcccctca ccgccggaac aatctgggtg
     1681 ggcaccgacg acggcttagt tcagctgtcg cgtgacgctg gaacgaactg gacgaacgtc
     1741 ac
//
LOCUS       DATCGC010001112         1124 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_449771, whole genome shotgun sequence.
ACCESSION   DATCGC010001112 DATCGC010000000
VERSION     DATCGC010001112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1124)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1124)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1124
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_449771"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1065
                     /locus_tag="VIJ87_10785"
     CDS             <1..1065
                     /locus_tag="VIJ87_10785"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY5444937.1"
                     /translation="KSVSLKPAGQVQLMPPDTDLGWLPQVGWIDARDSAKQPLWLRDP
                     QNKFWFEYLPDARAVYVQLNQIGNKDDESMESFSNRLLSFIDSNAVERLVLDLRLNRG
                     GNGEFNRPILRALIKANKVDQKGKLFVIVGRSTWSAAQFLVNKLEDYTEAIFVGEPTG
                     GKRNSYGDSRRITLPNSGITVRVSTLWWQEDERDRRQWKAPELAADLTFDDYRRGIDP
                     ALRTALEYVPRKSLSEQLSETISANNPVRALEVFKRWRSAPINRYANGEAQVNRLGYE
                     LLSRKQIDQAIEVFKLNVVEFPESTYSFDSLADAYAARGDKELAIKSYQRAVELDPAN
                     ESAKELLEKLRGELQKSVKP"
BASE COUNT          283 a          254 c          313 g          274 t
ORIGIN      
        1 aagtcggtct ctctaaaacc tgccggacaa gttcagctga tgccacctga tactgatctc
       61 ggttggcttc ctcaagttgg ctggattgat gctcgggatt ctgcaaaaca gccgttgtgg
      121 ctaagagatc cacaaaacaa attctggttt gaatatttac ctgatgcccg ggcagtctat
      181 gttcaactta accagattgg aaacaaagac gatgagtcga tggagtcgtt ctcgaatcga
      241 ctgctttcgt ttatcgactc gaatgcggtg gagcgactcg ttctggatct tcgtttgaat
      301 cgaggtggaa atggagagtt taatcgacca attcttcgag cactgattaa ggcaaacaag
      361 gtcgatcaaa agggcaagct tttcgtgatt gttgggcgca gcacctggtc agccgcacag
      421 tttctggtta acaagttgga agattacacc gaagcgatct ttgttggtga accaaccggt
      481 ggaaaacgaa attcatacgg cgactctcgt cgcattacac tgccgaacag cggcatcact
      541 gttcgcgtgt caactctgtg gtggcaggag gacgaacggg atcgtcgtca atggaaagca
      601 ccggagttag ctgctgatct cacgtttgac gactatcgcc gcggcatcga tccggctttg
      661 agaactgcgt tggagtacgt gccccgaaag tctcttagcg agcagctttc cgaaaccatt
      721 tccgcgaata atccagtgcg tgcgttagaa gtcttcaagc gatggcgatc agcgccaatc
      781 aatagatatg cgaatggcga ggcacaggtg aatcggcttg gttatgaact gctctcgagg
      841 aagcaaatcg atcaagctat cgaagtcttc aagctgaacg ttgttgagtt tccggaatcg
      901 acttatagct tcgacagttt ggcggacgcg tacgcggcgc gtggagacaa ggaactggca
      961 attaagagtt accagcgggc agttgaactg gatccggcaa acgagtcagc aaaagagtta
     1021 ttggagaaac tccggggcga actacagaag agcgtgaagc cctgatgatg gattgagctt
     1081 tgcagtttgg cgcctcgatt gggatttgcg gctttgccgc ctcc
//
LOCUS       DATCGC010001113         1906 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_413836, whole genome shotgun sequence.
ACCESSION   DATCGC010001113 DATCGC010000000
VERSION     DATCGC010001113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1906)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1906)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1906
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_413836"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1906
                     /locus_tag="VIJ87_10790"
     CDS             <1..>1906
                     /locus_tag="VIJ87_10790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY5444938.1"
                     /translation="TTKTNDQGVYSFNKVAPGQGYTITITASGFQTLVINDVALGVGN
                     IETHNGELTIGEVSGTVVVTASNEVTLNTTDASIGNVISERRLKELPIQIRSSPAALI
                     SLQPGVVGNNVGTGTTNRVGSVTGSRADQGNITVDGIDANDQATGQFAATVGNAPIDA
                     IQEFRAVSTNPNASEGRSSGGQVELVTKSGTNDFHGNLYEYNRTAKTAANSFFNNRSG
                     VARPQLTRNQFGGSIGGPIMKDSLFFFFNYEGRRDAQGISYLRVVPLDHWRSGSLGFL
                     NNTAGCAASARLNTAPQCITILTPAQVAAMDPKHVGGSPELLSFINTRYPHANDLTAG
                     DGVNTGGFRFNAPSKRADNTYTTRLDWNPTSKQKVFGRFNIARRLQTDTVNSVAAQFP
                     GDPETAQIVVKDYAWVVGDTWTVSNNLVNQATVGVSRSGLLFPTNFKPSFPNSFTFGM
                     GLSAPFAGISDQDRFVLVPTIRDDVTWIKGAHTFEFGGSLKPIDSKSGIVNDFNFPTV
                     GLGGLLASLDPTLRPGTIGTGTARSSNYDSAFTFLLGRFAQISTNFNYDTTGTAFAPG
                     TGKHRDYKYNETELYVQDNWKIRNNLTLNFGVRYHLYPAPYEKDGFQAGQDTELKNLL
                     DTRIHNAALG"
BASE COUNT          483 a          497 c          473 g          453 t
ORIGIN      
        1 aaacgacaaa aacgaacgac cagggagtct attcatttaa caaagtagcc ccaggtcaag
       61 gttacacaat cactattaca gcctctggct ttcagacact cgtcatcaac gacgtagcac
      121 ttggcgttgg caatatcgaa actcacaacg gcgagctgac tatcggcgaa gtttcaggaa
      181 ctgtagtggt aactgcttca aacgaagtta cgctgaatac aacggatgcg agtatcggta
      241 acgttatcag cgaacgtcgt ctgaaagagt tgccaattca gattcgcagt tcgccggcag
      301 cattgatcag tctgcaaccg ggtgtggttg gcaataatgt tggaacagga accacgaacc
      361 gagttgggtc tgtcaccggt tcgcgtgcag accagggcaa tatcactgtc gatggaatcg
      421 acgcgaacga tcaggctact ggtcagtttg ctgccaccgt tggtaatgcg cccatcgatg
      481 ctattcaaga gttccgagca gtctcaacta atccgaatgc ttcggaagga cgaagcagtg
      541 gtggtcaggt tgagctggtt acgaagagcg gaacaaacga ctttcacggg aacctatacg
      601 aatacaaccg cactgcgaag accgccgcga atagcttctt taacaatcgc tccggcgtcg
      661 cccgcccgca gttaacccga aatcaattcg gcggtagcat tggcggccct atcatgaagg
      721 actcactgtt cttcttcttc aattacgaag gacggcgcga tgcccagggg atttcatact
      781 tgcgcgttgt tcctctcgat cactggcgaa gcggaagctt gggcttccta aacaacactg
      841 ccgggtgtgc agcaagcgct cgcttgaata ccgcacctca gtgcatcacc attctgactc
      901 ctgcccaggt tgcagctatg gacccgaagc atgtcggtgg cagtcctgag ctgttgagtt
      961 tcatcaacac tcgttacccg catgctaacg atctaactgc gggcgatggc gtcaatactg
     1021 gcggtttccg ttttaatgca ccttcaaaga gggctgacaa tacgtacaca acccgacttg
     1081 attggaatcc gacctccaag caaaaggttt tcggtcgttt caatattgct cggcgactac
     1141 aaacggacac cgtcaattca gtggccgctc aattcccggg cgatcccgaa actgcgcaga
     1201 tcgtggtcaa agattatgcg tgggtagtag gtgatacatg gacggttagc aataacctgg
     1261 tcaaccaggc cacggttggt gtttcccgat ccggtttgct atttccaact aacttcaaac
     1321 catcattccc caattcgttc acttttggaa tgggactatc agctcctttc gcaggcatca
     1381 gcgatcaaga tcgcttcgtg ctcgttccga cgattcgcga cgacgtcacg tggatcaagg
     1441 gtgcacacac cttcgagttt ggaggttcct taaagccaat cgattcgaag tctgggatcg
     1501 tgaacgactt caatttccca acagttggtc ttggtggctt gctggcttct cttgacccga
     1561 cgcttcgtcc aggaacgatc ggcacgggta cggctcggag tagcaattac gattcagcct
     1621 ttaccttctt gctgggaagg ttcgctcaga tctcgaccaa ctttaattac gacacaaccg
     1681 gtacagcatt cgctcctgga accggcaagc atcgtgatta caagtacaac gaaaccgaat
     1741 tgtatgtgca ggacaactgg aaaattcgaa acaacctgac acttaacttt ggagttcgtt
     1801 atcacctgta tcccgctccg tatgaaaagg acggtttcca ggcaggtcag gacaccgaac
     1861 tcaagaactt gttagatacg cgaattcata acgcggcttt aggaat
//
LOCUS       DATCGC010001114         1712 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_482916, whole genome shotgun sequence.
ACCESSION   DATCGC010001114 DATCGC010000000
VERSION     DATCGC010001114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1712)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1712)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1712
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_482916"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1495
                     /locus_tag="VIJ87_10795"
     CDS             <1..1495
                     /locus_tag="VIJ87_10795"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY5444939.1"
                     /translation="PTTLFAQTTTQDKVRNYHRANEHKIVNEFLSLLSIPNIASDNPN
                     IRKNAELILAMMKQRGLNPRLLEAQTPNTPPVVYGEWKPPGAQRTLILYAHYDGQPTD
                     PKQWTGTLPWTPVFRSAATEAGGEILPTPGDGQPINPEWRIYARSASDDKAGVMAILT
                     ALDALKANSIALSSNIKFVFEGEEEAGSSHLGEIIKLNKDLLESDAWIICDGPVHQSG
                     AKEVVFGARGDVNADVTIYGAKRPLHSGHYGNWSPNPAMMLARLLATMKDDDGRVLIN
                     GWYSDVEPLGDAERRAIAEAPQYDEQLKTQLGIKRTEGGGKSLMELINVPSLNINGFA
                     SGDVGALARNVIPTSASVVLDLRLVRGNDVKRQVQRLIDHIQKQGYFVIDHNPTDTER
                     SQYPLLAKVMARAGGYNAERTRMDLPLSINVIEAVQSTSKEKVVLLPTSGGSLPLSVI
                     TENLKTVTMSVPIANYDNNQHAENENIRLQNLWDGIETYAALMTMKQ"
BASE COUNT          465 a          436 c          424 g          387 t
ORIGIN      
        1 acccacgaca ctgtttgccc aaacaacaac ccaggacaaa gttcgcaact atcatcgtgc
       61 aaacgaacac aagatcgtta acgagttcct ttcgctgctg tctattccaa atatcgcttc
      121 tgataatccc aacattcgca agaacgctga actcatcctg gcgatgatga aacaacgtgg
      181 tctaaatcca cgactgttag aagcacaaac cccaaacact ccgcctgttg tctacggtga
      241 atggaaacct ccgggcgcgc aacggactct gattctttac gctcactatg atggtcaacc
      301 gaccgacccg aaacaatgga ctggaacctt accgtggaca cccgtttttc gttcggcagc
      361 aacagaagcg ggcggtgaga ttcttccaac cccgggcgat ggtcaaccta tcaatcccga
      421 gtggcgtatt tatgctcgct cagcgtcaga cgacaaggcc ggtgtgatgg cgatcctcac
      481 tgcccttgac gcgttgaagg caaactcgat tgctttatcg tcaaacatca aatttgtttt
      541 cgaaggcgaa gaagaggcag gctcctctca tctcggggag ataattaaac tcaataagga
      601 tcttctcgag tctgatgcgt ggatcatttg tgatgggccg gtgcatcagt caggcgcaaa
      661 ggaagttgtt ttcggagcac gtggagacgt caatgctgat gtgacgatct atggagctaa
      721 gcgaccgcta catagcggcc actacggaaa ctggtcacca aacccagcaa tgatgctggc
      781 tcgactcctt gcgaccatga aagacgacga cggacgagtc ttgatcaatg gttggtactc
      841 cgacgttgag cctctcggtg atgccgagcg acgagcaatt gccgaagcac cgcagtacga
      901 cgaacaactc aagacacagt tgggaatcaa acgcaccgag ggcgggggca aaagcctgat
      961 ggaactaatc aacgtgccct cgctaaacat caacggattc gccagcggcg acgttggggc
     1021 tttggctcgc aacgttattc caaccagcgc ttcggttgtt ttggatctaa gacttgttag
     1081 gggaaacgat gtaaagcggc aggtccaacg tttaatcgat cacattcaga agcagggata
     1141 ctttgttatc gatcacaatc cgaccgacac cgaacgaagt caatatccct tgctggcgaa
     1201 ggtaatggct cgcgcgggcg ggtacaacgc cgagcgaaca cgaatggatc ttccactgtc
     1261 gattaatgta attgaagcgg tccagtcaac gtcaaaggaa aaagtagttc tcctgccaac
     1321 ctcaggtggc agcttgccgc tttcagtgat tacggaaaac ttgaagacag tcacaatgtc
     1381 agtaccgatc gcgaactacg acaacaacca gcacgctgaa aacgagaaca ttcgacttca
     1441 gaatctttgg gatgggattg agacgtatgc ggcgttgatg acgatgaaac aataaatctc
     1501 agatctcaga tttgaaactt aagaatctga gatctgagat cctgaaatct gagatcaagt
     1561 tataacgtgc agccgtacac tttcatcgaa gtcttcgcgc tttcctggga agacttgcat
     1621 gcagcaacga gtgcagcttt tgttcgcgga tcggaagcct gagccttcca ggttttcttc
     1681 cacgtggcta tcccagtttc aaatgttgct ct
//
LOCUS       DATCGC010001115         1196 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_214477, whole genome shotgun sequence.
ACCESSION   DATCGC010001115 DATCGC010000000
VERSION     DATCGC010001115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1196)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1196)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1196
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_214477"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1196
                     /locus_tag="VIJ87_10800"
     CDS             <1..>1196
                     /locus_tag="VIJ87_10800"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY5444940.1"
                     /translation="ARDEVLSNYIKQYHGQLRTSVQAVAAISGGGFRNADIQYVIGGP
                     DLTKLTEYSDALLAKMKTIPDVVDVDSTLINGKPEVRVVIDRERSADLGVRVGDIAQA
                     LNTLVAGTKVSTFNAGTDQYDVLVRATGEYRTSVEGLKKMIVSSSKMGWVSLDNLVHF
                     EEGTGPSAIDRLNRKRQVTLMANVKPGGSQSAVIAKMNQFVKEMTLDPAYSTGLAGRS
                     KELGRAGYYFVLAFVLSFIFMYMVLAAQFESFVHPITILLTLPLAIPFGILSLLMTGQ
                     TVNIYSGLGLLLLFGVVKKNAILQIDHTNQLRERGMERLEAIIRGNRDRLRPILMTTI
                     ALVAGMLPLTISTGPGSGTNRSIGVLVVGGQSLCLLLTLVAVPVFYSLFDDLARSRVW
                     GRLNLL"
BASE COUNT          264 a          309 c          324 g          299 t
ORIGIN      
        1 aagcgcgcga cgaagtactc tcaaattaca tcaagcaata ccatggtcag ttgcgcacga
       61 gcgtccaagc agtcgcagcc atctctggag gcggtttccg caacgctgac attcaatacg
      121 ttatcggtgg acccgatctt acaaagttga ctgaatactc agacgcgctg ctcgcaaaga
      181 tgaagacgat cccggacgtc gtcgacgtcg attcgacgct cattaacggc aagccggaag
      241 ttcgtgtcgt tatcgaccgt gaacgatctg ctgatttggg agtgagggtc ggtgacatcg
      301 cccaagcctt aaatacgctc gtggctggca cgaaggtgtc gactttcaat gccggcaccg
      361 atcaatacga tgtcctggtg cgcgccaccg gtgaatatcg caccagcgtc gagggtttga
      421 agaaaatgat cgtctcgtct tcaaagatgg gatgggtgag cctggataat cttgttcact
      481 ttgaagaggg aacaggccca tctgcgatcg acaggttgaa ccgcaaacgt caggtaacac
      541 tcatggctaa cgtaaagcca ggcggttcgc agtcggcggt gatcgcgaag atgaatcagt
      601 ttgtgaaaga gatgactctt gatcccgcgt acagcacagg cctggcgggt cggtctaaag
      661 aactcgggcg tgctggttac tacttcgtgc ttgctttcgt tttgtcgttc atcttcatgt
      721 acatggtgct ggctgcacaa tttgagtctt ttgttcaccc aataaccatc ctgttaacgc
      781 tgccgttagc aattccgttc ggcattctgt cgttgctgat gaccggtcag actgtaaaca
      841 tttactccgg actcggtctg ctgctgttgt ttggtgtggt gaagaagaac gcgattctgc
      901 aaatcgatca cacgaaccag cttcgtgagc gcgggatgga acgactggaa gccatcatcc
      961 gcggcaaccg agatcgttta cgaccgatcc tgatgaccac gatcgcactc gtcgctggca
     1021 tgttgccgct gactatttcg accgggcccg gctccggcac taatcgatca attggcgtcc
     1081 tcgtagttgg cggacagtcc ctgtgtttat tgctcacact ggtagctgtt cctgttttct
     1141 attcactctt cgacgacttg gcaaggagcc gcgtttgggg acgactcaat cttctc
//
LOCUS       DATCGC010001116         1048 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_449811, whole genome shotgun sequence.
ACCESSION   DATCGC010001116 DATCGC010000000
VERSION     DATCGC010001116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1048)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1048)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1048
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_449811"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..461)
                     /locus_tag="VIJ87_10805"
     CDS             complement(<1..461)
                     /locus_tag="VIJ87_10805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444941.1"
                     /translation="MCSRIMSGLMIVLLALVTVPSVVGKNSRKSRTIPATISVAMVSS
                     TKEAALHDAMRKLWEDHITWTRLFIVSAVADLPDKGATTERLLQNQVDIGNAIKPYYG
                     DAAGEKLTALLKTHITTAAELVAAAKANDTAKMGDASKRWYTNADEIAAFL"
     gene            complement(480..695)
                     /locus_tag="VIJ87_10810"
     CDS             complement(480..695)
                     /locus_tag="VIJ87_10810"
                     /inference="COORDINATES: protein motif:HMM:NF020917.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043231 - intracellular membrane-bounded
                     organelle [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDGSH iron-sulfur domain-containing protein"
                     /protein_id="HEY5444942.1"
                     /translation="MADFSIRATPNGPYIVQGATELLDTAGDKYPLEKESIALCRCGH
                     SSNKPFCDGTHSKIGFQATEKVADWKR"
     gene            complement(766..>1048)
                     /locus_tag="VIJ87_10815"
     CDS             complement(766..>1048)
                     /locus_tag="VIJ87_10815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444943.1"
                     /translation="CSQCHVPPLFTEPGWNAHKASEIGIDDFQANRSPDNSYRTTPLR
                     GLFAHMKRGFYHDGRFATLLDVVEHYNTFKRLDLSGQEKNDLVEYLKSL"
BASE COUNT          242 a          275 c          257 g          274 t
ORIGIN      
        1 ctcaagaacg cagcgatctc atcagcattg gtataccaac gcttacttgc gtcccccatt
       61 tttgctgtgt cattggcttt ggcggcggca accagttctg ccgcagtcgt aatgtgtgtt
      121 ttcaagagcg ccgtcagctt ctcacctgcg gcatctccgt agtagggctt gatggcgtta
      181 ccgatgtcca cctgattttg gagtagacgt tcagtggtcg cacccttgtc aggcagatcc
      241 gccacagcgc tcacaatgaa gagacgcgtc caggtaatgt gatcttccca aagtttacgc
      301 atggcgtcgt gaagagcggc ctctttcgtt gaactcacca tggccactga aatcgtagcc
      361 ggaatagttc gcgacttccg ggagttcttc ccgacgaccg aaggaacagt tactagggcc
      421 aaaagcacaa tcattaagcc tgacataatt cgactacaca tgaatcttct ccttgtagct
      481 tagcgcttcc agtcggcgac tttttcagtt gcctggaaac caatcttgct atgggtacca
      541 tcacagaacg gtttgttgct tgagtggccg caccgacaga gtgcgatgct ttccttttcg
      601 agcggatatt tgtctcctgc tgtgtcaagc agttcggtag cgccctgcac aatgtaagga
      661 ccatttggtg ttgcccggat tgaaaaatca gccattgcat ctccttcaga atttatttcg
      721 cttctctctt aagacgtcag aacagtttct tgcagaccat tgcgattaca gcgatttcaa
      781 gtactcaacc agatcattct tctcttgccc gctcaaatcc agtctcttga aggtgttgta
      841 gtgttcgacc acatccagca gagtggcaaa ccgaccgtcg tgataaaaac cgcgtttcat
      901 atgcgcaaac aacccgcgca agggtgtggt gcgataggaa ttgtcggggg aacgattagc
      961 ctggaagtcg tcaatgccga tctccgatgc cttgtgcgca ttccaacccg gttcagtgaa
     1021 gagcggagga acgtgacact gagaacaa
//
LOCUS       DATCGC010001117         1999 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_318115, whole genome shotgun sequence.
ACCESSION   DATCGC010001117 DATCGC010000000
VERSION     DATCGC010001117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1999)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1999)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1999
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_318115"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..498)
                     /locus_tag="VIJ87_10820"
     CDS             complement(<1..498)
                     /locus_tag="VIJ87_10820"
                     /inference="COORDINATES: protein motif:HMM:NF018435.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HEY5444944.1"
                     /translation="MKFIEKFFKHELAIDLGTVNTLIYDPDRGILLSEPSVIAIDRYD
                     DEVVSVGHEALKMLGREPRGIEVHRPIRSGTIFNFEVTHKMLRSFLTSVTDGYRRGHF
                     VVGTPGSATAVEQRSVREAAYDAGASRIDLVDEGLAAGLGAGLSFEDERAHLVVDVGG
                     GTTNIA"
     gene            complement(742..>1999)
                     /locus_tag="VIJ87_10825"
     CDS             complement(742..>1999)
                     /locus_tag="VIJ87_10825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444945.1"
                     /translation="SKRVATPGENFIAITDPGSPLVDTALELGFQRTFLNQADIGGRY
                     SALSYFGMVPAALMGIDISKFLAHAKEAEQTCSPVMPAEKNIALQLGVVLGECARAGR
                     DKLTLVIGDEIDTLGLWIEQLVAESTGKEGKGVLPVASEKLGTVGNYGDDRLFVSISI
                     GRASEEVRASLGALAGAGHPVVYRELADVYDLGAEFFTWEFATACAGWRLGINPFDQP
                     NVQESKDATKELLNTFVNHGKLPDQNKLVSDDALAIYGEADQKQLSSDSTLAAIRSHL
                     STIKSGDYVALLNYVEETPEIDGEIQKIRLLLRDATKCATTIGYGPRFLHSTGQLHKG
                     GPDSGVFFQITANDAVDFPVPGEPYTFSILKQAQALGDFRSLAARGRRAIRIDLGNDT
                     VGGLKRLGQLISDALSESDAVATSRG"
BASE COUNT          470 a          543 c          494 g          492 t
ORIGIN      
        1 cgcgatgttg gtggtgccac ctcccacatc tacgacaaga tgtgcgcgct cgtcctcaaa
       61 actgaggccg gcgccaagtc cggccgccag gccttcatct accaaatcga ttcgactcgc
      121 accggcgtcg taggctgctt ctcgcacaga ccgttgctca acggctgttg cggagccggg
      181 cgtcccaact acaaagtgtc cacgacggta gccatcagtg acgctggtaa gaaacgaacg
      241 cagcatcttg tgtgtaactt caaagttaaa tatcgtccct gatcgaatgg gtcgatgaac
      301 ttctataccg cgtggctcac gaccgagcat ctttagagct tcgtgaccga ccgatacaac
      361 ttcgtcgtcg tatctgtcga tagctattac ggatggttca cttagcagta ttccccgatc
      421 gggatcatag atgagcgtgt tgaccgttcc gaggtcaata gccaactcgt gtttgaaaaa
      481 tttctcgatg aacttcatgg cgacggttcc tcctccgaag tggcaggggc ctggaagcaa
      541 agtaaatctt aagcttcatt tggcaacttg tatgcctgaa ataaaggtca attgcgtcgg
      601 gggaatgtct ttgaatttag tagacggtga ttagatgaag gtttccagtt tgtacgacat
      661 ttagtcgtga gatttttttg acgtactact ttgaggcgtt cgttcaggat gacgtggtgg
      721 tttccaggga ctgaggtctc cttaaccccg gctcgtcgcc accgcgtccg attcggaaag
      781 tgcgtcacta atcaactgac ccagacgctt caacccgccg actgtgtcgt tgcctagatc
      841 tatccgaatg gcacgtcgac cacgagctgc gagtgaacga aaatctccga gcgcttgagc
      901 ttgtttgaga atactgaaag tgtagggctc accgggcaca ggaaaatcaa cggcgtcgtt
      961 cgcagtgatt tggaaaaaca caccactgtc cggtcctccc ttgtgtagct gccccgttga
     1021 atggaggaaa cgcggaccgt agccgatggt ggtagcacac ttagtcgcgt ctctaagcaa
     1081 caatctgatc ttttggatct ccccatcgat ctcgggggtc tcttccacgt agttcaacag
     1141 cgcaacataa tcacccgact taatcgtcga caaatggctc ctgatagcag ctagtgtaga
     1201 gtcgctcgat aactgctttt gatcagcttc gccgtagatc gccaaggcat cgtccgacac
     1261 caacttgttc tggtcgggaa gctttccgtg attgacgaat gtgttaagga gttccttagt
     1321 cgcgtccttc gactcctgga cattcggttg atcgaaagga tttatcccca atctccaacc
     1381 agcacaggcc gtcgcaaatt cccaggtgaa gaactctgct cccagatcat aaacgtcagc
     1441 tagctcccga tatacaacag gatgtcccgc gccggccaat gcaccaaggc tcgcgcgaac
     1501 ctcttcggag gcacgaccga ttgagatgga aacaaatagc ctatcgtcac catagttgcc
     1561 cacggttccc aacttctctg acgcaactgg caacactccc ttcccttcct ttccagtact
     1621 ttctgccacg agttgttcta tccacaatcc cagggtatcg atctcgtcac cgataaccaa
     1681 ggtgagcttg tcacggccag cacgagcaca ttcaccgagt acgactccta attgcagagc
     1741 tatgtttttc tcagcaggca tcaccggtga gcaagtttgc tcagcctctt ttgcatgcgc
     1801 caggaatttg gaaatatcga ttcccatcaa tgctgcgggc accattccaa aataggaaag
     1861 ggcggagtag cgaccaccta tgtcggcctg attcaagaag gttctttgga aaccaagttc
     1921 tagtgcggta tcaactaatg gcgaccctgg atcggtgata gcaatgaagt tctcacccgg
     1981 tgtcgcgacg cgtttgctg
//
LOCUS       DATCGC010001118         1096 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_84659, whole genome shotgun sequence.
ACCESSION   DATCGC010001118 DATCGC010000000
VERSION     DATCGC010001118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1096)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1096)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1096
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84659"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1057)
                     /locus_tag="VIJ87_10830"
     CDS             complement(<1..1057)
                     /locus_tag="VIJ87_10830"
                     /inference="COORDINATES: protein motif:HMM:NF015140.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007154 - cell communication [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Calx-beta domain-containing protein"
                     /protein_id="HEY5444946.1"
                     /translation="MIINDDTEGGTTVQFSQASFDVQEDLTAAIITVMRTGDTSGTTT
                     VDYFTEDDTATQKSDYEIASGTLTFLPDETSKTFVVLINEDSYVEGPEKITLYLSNPN
                     GAITGEPYTAVLNIIDDGLESPGNVIDDAQSFVYLHYHDFLNREPDAEGLAFWTNQIT
                     SCGSDKQCIEARRADVSASFFLSIEFQETAYLLYLMQKESFATVPKYATFMHDLQEVS
                     RGVIVNSPGWQQKLADNQRQFAETWINRPEFKAAYDALSNDAYVNALYQNAGIVPSQA
                     EKDKLVALLNGAGMNRSAVLLEVASDASFRHQEQNPAFVLMQYFGYLHRNPDEGPDTD
                     LSGFNFWLKKLDDNGGDF"
BASE COUNT          239 a          286 c          309 g          262 t
ORIGIN      
        1 ggaagtcgcc gccgttgtcg tcgagcttct tgagccagaa gttgaagccc gagaggtctg
       61 tatccggccc ctcgtccggg ttgcggtgga ggtagccgaa gtactgcatc agcacgaagg
      121 ccgggttctg ctcctggtga cggaacgaag cgtccgatgc tacctctaac aggaccgcag
      181 aacgattcat gccggcgccg ttcaagaggg ctaccagctt gtccttttca gcttgcgagg
      241 gaacgatgcc cgcattctgg taaagggcgt tgacgtatgc gtcgttggac aacgcatcgt
      301 aggcagcctt gaactcgggt cggttgatcc aggtctcggc aaactgacgc tgattgtcag
      361 ccagtttttg ttgccagccg ggggaattca caatcacgcc gcgactgact tcctgcaagt
      421 catgcatgaa ggtcgcgtac ttcggcacgg tcgcaaaaga ttccttctgc atcaggtaga
      481 gcagataagc agtttcctgg aactcaatcg agagaaagaa tgacgcggaa acgtcggcgc
      541 gcctggcttc aatgcactgt ttatcgctgc cgcaggaagt gatttggttg gtccagaaag
      601 ccagaccctc cgcatcaggt tcacgattga gaaaatcatg atagtggagg tagacgaacg
      661 actgcgcatc atcgattaca ttgccaggtg attccaaccc atcatcgata atattcaaca
      721 cggccgtgta cggttcccct gtgattgccc cattcgggtt cgacaaatag agggttattt
      781 tttcggggcc ttcgacgtaa gagtcttcat taatcaacac cacgaaggtc ttgctcgttt
      841 cgtcaggaag aaaagtcagc gtgcccgacg cgatttcata atcactcttc tgggtcgccg
      901 tatcgtcttc agtgaaataa tcgacagtcg tggtgccaga ggtgtcgccg gtgcgcataa
      961 ccgtaatgat cgcggcagtc agatcttcct ggacgtcaaa actggcctgg ctgaactgca
     1021 ctgtggtgcc accctctgtg tcgtcgttga tgatcatgcc gttgccctga ccttgaccga
     1081 tttcggcgtt cgtggg
//
LOCUS       DATCGC010001119         1800 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_318144, whole genome shotgun sequence.
ACCESSION   DATCGC010001119 DATCGC010000000
VERSION     DATCGC010001119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1800)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1800)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1800
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_318144"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..853
                     /locus_tag="VIJ87_10835"
     CDS             <1..853
                     /locus_tag="VIJ87_10835"
                     /inference="COORDINATES: protein motif:HMM:NF013715.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HEY5444947.1"
                     /translation="WWLIVKGSYQRVERAFLLMSLVFLGYIISAFLSRPDWSQVAVGL
                     VKPTFKLEQSFLFSFVAIVGTTISPYMQVFVQSSVVEKGVTPEDYGKTKIDVWAGTIF
                     AILIVFFIVVSTAATLHKSGIQISTAADAARALSPLAGKYAEVLFGVGLFGASMLAAG
                     VLPLATAYSISEALGFEKGVSRSFKEAPIFLGVFTFLVAVGAAIAVIPNLPLIRVLLV
                     TQVINGLLLPFVLFAVLKLVNNRELMGSKVNGPLYNLAAWLTALVVTALSLLYILVSL
                     FPNLLRF"
     gene            956..>1800
                     /locus_tag="VIJ87_10840"
     CDS             956..>1800
                     /locus_tag="VIJ87_10840"
                     /inference="COORDINATES: protein motif:HMM:NF013117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HEY5444948.1"
                     /translation="MKRRQSKNTLILLAVNAAIVIVLLVLVFHFSEELNALIFRFKVD
                     TVAKSETIIGTIQLVLFGILAYIVVRGLSFLIFGMFRLRRGFDAPTLVRNVFSIVAFS
                     LLFLLIFTFEFPKANLGALFTTSAIFGVILGLALQDTLGNFFAGISLQADRPFQVGDV
                     ITVGTQRHTGVVEEISWRAIKIRTFQNHVVLINNSGAAKEPIEVCPRDNLNARLVFFN
                     TLYTDSPAKTIHVVREAVRETDNVSARVTPIVRIRNLGDYGVEYECKYWLEDYAKYND
                     TDALI"
BASE COUNT          403 a          461 c          452 g          484 t
ORIGIN      
        1 ctggtggctc atcgtaaaag gttcatacca aagagtcgaa agagcattcc ttctgatgtc
       61 gttagtcttc cttggctaca tcatatcagc gttcctttca cgtccggatt ggagtcaggt
      121 agcagtggga ttggtgaagc ctacattcaa gttggaacaa tcgtttctat tcagtttcgt
      181 cgccatcgtg ggaacgacta tctcgccata catgcaggtc ttcgtgcagt catccgtcgt
      241 cgaaaagggg gttacaccgg aagactacgg caagacaaag atcgatgttt gggcgggaac
      301 gatcttcgca attctgatcg tgttcttcat cgtggtttcg acggcggcta ctttgcacaa
      361 atcaggaatt caaatttcaa cggctgccga tgctgctcgg gcattgagtc cacttgctgg
      421 gaaatatgcg gaggttcttt tcggagttgg cttgttcggg gcatctatgc tggccgcagg
      481 agttctgcca ctggcgacag cctattcgat cagcgaggct ctcggatttg aaaaaggtgt
      541 ttcacgaagt ttcaaagagg caccgatctt tctgggagtg tttacatttc tcgtggctgt
      601 cggcgcagcg atcgccgtga ttccgaactt accactcatc cgagtattac tggtcacgca
      661 ggttatcaat ggcttacttc tgccattcgt attgttcgcg gtgttgaagc tggtgaacaa
      721 tagagaattg atgggtagca aagtaaacgg gccactctac aatctcgcag cctggctgac
      781 tgcgctggta gtgacggccc tgtctctcct ttatatattg gtcagccttt ttcctaacct
      841 tctgcgcttc taagcccgac cgtcctttac tctcgccaac cagatcaatc ggtgataaaa
      901 ggataggcgc tctaaaacat caattttcat cggctagtta cttctttcaa gagacgtgaa
      961 acgccggcaa tccaagaaca ccctaatact acttgcagtc aatgcggcga tagtgatcgt
     1021 cttgttggtg ctggtcttcc atttcagcga agagctgaac gcgctaattt tccgatttaa
     1081 ggtcgacacg gtcgcgaagt ccgagacaat catcgggacg atccagctgg tcttattcgg
     1141 aatccttgcc tacatcgtcg tgcgcggcct gagcttcctg atcttcggaa tgttcagact
     1201 ccggcgcgga tttgacgcac ccacgctcgt tcgcaacgtg ttttcgattg tcgcgttctc
     1261 gctgcttttc cttttgattt tcacctttga gtttcctaaa gcgaatctgg gagcgctgtt
     1321 tacaacgtca gcgatcttcg gcgttatcct cggtctggcc ctccaggaca ccctgggaaa
     1381 tttctttgcc ggcatctcgc tacaagccga tcgcccattt caagttgggg acgttattac
     1441 cgtgggaact cagcgccata cgggcgtcgt ggaggaaatc agttggcggg caattaagat
     1501 tcggacattc cagaaccacg tagtccttat taataacagc ggcgccgcaa aagaaccgat
     1561 cgaagtctgc ccccgcgaca atctgaatgc acgtctcgtc tttttcaata ctctttacac
     1621 cgactcaccc gcaaagacca ttcacgtggt cagggaggcc gtgcgcgaga ccgacaacgt
     1681 ttcagcacgc gttacgccaa tcgtccgcat tcgcaacctt ggcgattacg gcgtcgagta
     1741 tgagtgcaag tattggctag aagactatgc aaaatacaac gacacggatg cgttgatcag
//
LOCUS       DATCGC010001120         1098 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_50736, whole genome shotgun sequence.
ACCESSION   DATCGC010001120 DATCGC010000000
VERSION     DATCGC010001120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1098
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50736"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(355..678)
                     /locus_tag="VIJ87_10845"
     CDS             complement(355..678)
                     /locus_tag="VIJ87_10845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0061810 - NAD glycohydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIR domain-containing protein"
                     /protein_id="HEY5444949.1"
                     /translation="MHLLSTLRERIERADALVMDLAGHNPNVLIEVGMAVAMYKGESG
                     GLIILKPKNEPWPSNLQGMVYCNYDKSLRRGLEDQVGFRAALRTRILKVAKDRQMLSS
                     QADAS"
BASE COUNT          261 a          280 c          277 g          280 t
ORIGIN      
        1 cgggctggcg gtggacggct cttcctgcgt gaaaacatta gctgccataa aaatcgcgac
       61 tgtcgcgatt aagacgaaac gagtggtgat gcgatgcatg atcttttctc gacgcaatgt
      121 ctgcttggga aaaacacgac ttgtaatttc acgtcgagat cttggcaaga gtttctacgt
      181 ctatgagcca gagagcaggg gcgtgagtgg ccgccggttt gtttgagaac gataatcgct
      241 cgcatttgtg agatatcgcc gaatgaaccg caaaatcttt gtcgttaggc ctggtatgcc
      301 gaacctccag atcgtgggag aaatgatgag atcacgcaca tcgcgtggac gatttcaaga
      361 cgcgtctgcc tgggaactga gcatctgcct gtcttttgcg accttcagaa tgcgggttcg
      421 cagcgcggca cgaaatccca cttggtcttc taatcctcgc cgaagcgatt tgtcatagtt
      481 gcaatacacc attccctgaa gattactggg ccatggctcg ttcttcggct tcaggatgat
      541 tagcccgcct gattcacctt tatacatcgc gacagccatc ccgacttcaa tcaggacgtt
      601 aggattgtga ccggcgagat ccattacaag agcatctgcg cgttcaatcc gctcgcgcaa
      661 tgttgaaagc agatgcatgc cttgtcgtcc tcgcaatcga tgaagccgaa cgtcgagctt
      721 gtattcaccc ggtgatgcgg cgacgcgtga gtggcactca tcgatgacct tctttatcag
      781 acttctaaga aatacccaac gtcggtcttg ccttacaggt acggtcgatt tacccctcct
      841 actccaaggg gacgagacat aaatttcgat aggtctttcc gtgagcgagc cggtgttctc
      901 cacgttctca atcgctgaac taatgcacta caaatgtact tcggttgaaa agtagcaaag
      961 cgccgtaaaa aaagagtcga gacaatcgcc ggcttagcgt gctcacacga gggcaaatgc
     1021 tttctctcct aattcggaca tgagcgtctg aaagctgccc tcacgtcgat gacgtttgac
     1081 tttgctgttc tatttcat
//
LOCUS       DATCGC010001121         1209 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_115230, whole genome shotgun sequence.
ACCESSION   DATCGC010001121 DATCGC010000000
VERSION     DATCGC010001121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1209)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1209)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1209
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_115230"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            379..>1209
                     /locus_tag="VIJ87_10850"
     CDS             379..>1209
                     /locus_tag="VIJ87_10850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444950.1"
                     /translation="MKKLIQTLLTLLTLFLLSGVVLGDTLYLRDGRSFRGTLIGYING
                     RFAFKVIDPTRTTTQRETIARNEGEIRFFRPNEVDRVEIDGRSLDELKFETRTVDVPL
                     GPNWIDSGIDLRRNERVQTTASGTILAGRSRITPDGLRSSDPSSPLPSAAEGMLIGAI
                     GNDQNAPVLELGAAREFVADRDGRLFLTANRGTYNDARGSFTVQVKRERDQSALGEDN
                     RTDSPFGGQRPRNRSRTRESTSSVTPAEVVIDVPGISRGTDTNIDVRAGDQITFSTTG
                     T"
BASE COUNT          308 a          322 c          301 g          278 t
ORIGIN      
        1 cggactcccg caataagaat gaagcgctgc ccgcaatata aatgagtcga gactgaggac
       61 acgatttacg cgcgggttac ctgtaccaat gaagatcctg acaataacgt cccagttctt
      121 ctatttagct tgaaagaaat atgaacttag aagagtagtt aatgactgac tttactgact
      181 tcaaacatta ctcttaaaag taactcttgc ccggccgttt ccaaggggta taagctgagt
      241 cagtagtcgt tctcaggatc cgggagcttg cattctcgtt ggtcccgacc aactctccga
      301 ccagtaccgc atttttcatt caaccaacgt gaccgatgaa cttgcagccg acactgtcga
      361 gacgataggg agaaactcat gaagaaacta atccagactt tgttgacact cttaacgcta
      421 ttcctgctgt caggtgtagt gctgggtgac acactctacc tccgtgatgg ccgatcattt
      481 cgcggtactt taatcggcta catcaacggt cgctttgctt tcaaagttat tgacccaact
      541 cgaactacaa ctcagcggga gactatagcg agaaacgaag gcgaaattcg attcttccgc
      601 cccaatgaag tggaccgcgt ggagattgat ggtcgctccc tcgatgaact gaagtttgag
      661 actcgcactg tggacgtgcc tctcggtccg aactggatcg actcaggaat tgacctgcgc
      721 cgcaacgaac gagtccaaac aacagcctct ggaaccattc ttgccggtcg ttcgagaatt
      781 acgccagacg gattacgaag cagtgatccc tcttcgccgc ttcccagcgc cgccgagggt
      841 atgctgatcg gagccattgg gaatgatcaa aatgcacctg tgctggaatt gggcgccgct
      901 cgggagttcg ttgccgatcg tgatgggcgc ttattcttga cggcgaaccg cggtacctac
      961 aacgatgctc gcggctcttt cactgtacaa gtaaagcgtg aacgtgatca gtcagcgcta
     1021 ggtgaagaca accgcacaga cagtcctttt ggcggccaac ggccacgcaa tcgttcccga
     1081 acgagggaat ctacatcctc ggtcacgcca gcggaagtgg ttatcgatgt cccaggcata
     1141 tcccgcggta cggatacaaa catcgacgtg cgtgcaggag atcaaatcac cttcagcacg
     1201 accggaact
//
LOCUS       DATCGC010001122         2097 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_214585, whole genome shotgun sequence.
ACCESSION   DATCGC010001122 DATCGC010000000
VERSION     DATCGC010001122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2097
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_214585"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..297
                     /locus_tag="VIJ87_10855"
     CDS             <1..297
                     /locus_tag="VIJ87_10855"
                     /inference="COORDINATES: protein motif:HMM:NF024928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase C-terminal domain-containing protein"
                     /protein_id="HEY5444951.1"
                     /translation="VVELPPKVHEYNRRRQFFYTYDPRRVIELAYALTTHKCQGSQYD
                     NISYIMASCAFFNLSRPNLYTGLTRAIKHATLITDQRSLATSLKSLGWKRKPKS"
     gene            294..458
                     /locus_tag="VIJ87_10860"
     CDS             294..458
                     /locus_tag="VIJ87_10860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444952.1"
                     /translation="MMTNTEIVQLAEWIKKLRWVSIDKDNMEFTVDTTCYVKDALNKW
                     ADSVLKGDNE"
     gene            455..>2097
                     /locus_tag="VIJ87_10865"
     CDS             455..>2097
                     /locus_tag="VIJ87_10865"
                     /inference="COORDINATES: protein motif:HMM:NF013755.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HEY5444953.1"
                     /translation="MTLTTAELKERFSLQASAAGLVVECSMGGTLHSTIAVIAEAPGR
                     NEVAQGIPLVGGAGNILWRAIRTHCPEVKRHECYITNVVKRQVAFDVNEGANRKPVGK
                     HELSAWQELLKWELEHLPNLQHVLLLGNYAVEALLGKKGITSWRGSVIPCIVGNREVT
                     AVCTFNPAFCARDPMAHIMFDMDIGDKLRPVVLGTFKPHAVVTHINPTCKQALDYIAM
                     CKASRDPIASDIEVIANETACVGLAPTTHEAMCIAFRNEERNVYQHHEETAIRLALQS
                     LYAAPTTRMVWQNGGFDMSWLWFKDRIRCRPAYSDTMLGHHVLYPTMPHDLGFIVKQY
                     TMHPFYKNEKDEWRHTGGVDNFWIYNGKDCALTLAANRGIISELRDQKLDKFYFEHVM
                     RLQHHLVWMTVGGVLNDMELRRRMLDENTPGNLYSDLQSKLHEFYVAARDAVGDNTYT
                     PNPNSPKQMAELYFSKLKLVGRGVSTDATNRELMRKHPRTSPAARRVLDAVDAYIEDD
                     KFYSVYASAKPDYDSRMRCDYRQTGVRSAPGRLSSAQTL"
BASE COUNT          539 a          564 c          514 g          480 t
ORIGIN      
        1 gttgtcgaac taccacccaa ggtgcatgag tacaacagac gtaggcagtt cttctacacc
       61 tacgatccac gtcgcgtgat tgagttggcc tatgctctca ccacgcacaa gtgtcaaggc
      121 tcgcagtatg acaacatctc ctacatcatg gcatcatgcg cgttcttcaa tctctcacgt
      181 cccaacctat acaccggcct cacacgtgcg atcaaacatg cgacgttgat aacagaccaa
      241 cgctcactcg ctacatcgtt gaagtcactc ggttggaaga ggaagcctaa gtcatgatga
      301 caaacacaga gatcgtacaa ctcgctgaat ggattaagaa gctgcgttgg gtatcaattg
      361 acaaagacaa catggagttc actgtagaca ctacatgcta tgtcaaagat gcacttaaca
      421 agtgggccga cagtgtgttg aagggggaca acgaatgaca ctaacaacag cagaacttaa
      481 agaacgcttc tcacttcagg ctagtgcggc ggggcttgtc gttgagtgct ctatgggtgg
      541 tactctccac tcgaccatcg ctgtcatagc tgaagctccg ggtcgcaacg aggtcgctca
      601 aggcatcccg cttgtaggcg gtgcaggaaa catactctgg cgtgccatcc gcactcattg
      661 tccagaggtg aagcgtcatg agtgttacat caccaacgtc gtcaagcgtc aggttgcgtt
      721 cgatgttaac gagggtgcga accgtaagcc ggtagggaaa catgagctat ccgcttggca
      781 ggagttgctg aagtgggagc ttgaacacct gcctaactta caacatgtct tactccttgg
      841 caactacgcc gttgaagcct tgctaggtaa gaagggcata acgtcgtggc gcggcagtgt
      901 tataccgtgt atagtaggca atcgtgaagt cactgctgta tgcaccttta atcctgcgtt
      961 ctgcgcgcgt gatcctatgg cacacatcat gttcgacatg gacataggtg acaaacttcg
     1021 ccctgttgta ctcggaacct tcaaacccca tgcagtcgtc acacatatca accccacctg
     1081 taagcaagca ctcgattata ttgctatgtg taaagcctca cgtgatccaa tcgcatctga
     1141 catcgaagtc atcgctaatg aaacagcttg cgtcggcctt gctcctacaa cgcatgaagc
     1201 aatgtgcatc gccttccgca acgaagaacg caacgtctac caacaccacg aagaaactgc
     1261 cattcgtctc gccttacagt cgctctatgc tgcgccgact acacgcatgg tgtggcagaa
     1321 tggaggcttc gacatgtcat ggctctggtt taaggatcgc attcgctgtc ggcctgccta
     1381 tagtgacacg atgctgggtc atcatgtgct atacccaaca atgccgcacg atcttggctt
     1441 catcgtcaaa caatacacaa tgcatccgtt ctataagaat gagaaggacg aatggcgcca
     1501 tactgggggt gttgataatt tctggatata caacggtaaa gactgcgctc tcacacttgc
     1561 agcgaaccgt ggcatcatat cagaactccg cgatcagaag ctagacaagt tctacttcga
     1621 gcacgtcatg cgtttgcaac atcaccttgt gtggatgaca gtcggtggag tgttgaatga
     1681 catggaacta cgtcgtcgta tgctggacga gaacacaccc ggtaacttgt acagtgatct
     1741 gcaatctaaa ctacacgagt tctacgttgc ggcaagagac gctgtgggtg ataacaccta
     1801 cacgcccaac cccaattctc ctaagcaaat ggctgaactc tacttcagca agctcaagct
     1861 cgtcgggcgt ggtgtgagta ccgacgctac caatcgcgaa ctcatgcgca aacatccacg
     1921 cacatcccct gccgctcgcc gtgtgctcga cgccgtagac gcatacatcg aggacgacaa
     1981 gttctactct gtctacgcat cagccaagcc tgactacgac agccggatgc ggtgtgacta
     2041 cagacagacg ggggtgcgtt ctgctccggg taggttgtcg tctgctcaaa cgctgtg
//
LOCUS       DATCGC010001123         1250 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_482996, whole genome shotgun sequence.
ACCESSION   DATCGC010001123 DATCGC010000000
VERSION     DATCGC010001123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1250
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_482996"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..49
                     /locus_tag="VIJ87_10870"
     rRNA            <1..49
                     /locus_tag="VIJ87_10870"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            208..284
                     /locus_tag="VIJ87_10875"
     tRNA            208..284
                     /locus_tag="VIJ87_10875"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:242..244,aa:Ile,seq:gat)
     gene            343..418
                     /locus_tag="VIJ87_10880"
     tRNA            343..418
                     /locus_tag="VIJ87_10880"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:376..378,aa:Ala,seq:tgc)
     gene            823..>1250
                     /locus_tag="VIJ87_10885"
     rRNA            823..>1250
                     /locus_tag="VIJ87_10885"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          284 a          333 c          362 g          271 t
ORIGIN      
        1 gtcgtaacaa ggtagccgta ggggaacctg cggctggatc acctcctttc taaggatgaa
       61 cctgtatggt tccaggcaca tcgcttggac ctcatggttc ctcgttggaa aatagggatc
      121 ggttcgtcag accggtcccg cgaaatgcct gcgggacacc gccgccttcg tttctctttc
      181 ttcgtttgga cgtccgccgc gtttaccggg cctgtagctc agttggttag agcgcgcgct
      241 tgataagcgt gaggtcgaaa gttcaaatct ttccaggccc accacatcct cggtggccaa
      301 cctacccatg ggatcgcctg gaagtggccg caaggtcgat acggggccat agctcagttg
      361 ggagagcgcc tgctttgcaa gcaggaggtc gtcggttcga tcccgtctgg ctccaccagc
      421 cttcgccgct ccgcggcttc ggctcggcaa gccagaacgt gtgagagcga accgaaaacc
      481 gccgacacac aactcgtcca tgaacttgaa tttgtatcgc gtcgatcctc gatcacgcga
      541 tgcaggttgt ctgacatcgt gaagaggaga tcgatccgca gttgtacgca gtgatgagct
      601 gcgtccgaca cccatatcct ataggcgcgc ttgaccgcac gcctcgcggg tcgatctcga
      661 agcaagctgg tctttctgtc agtgctcgca tcgaacgagc ttcctttcac gcgcaagttc
      721 ttcatcgcaa gatgattggc cttcgctaga tggtcttcca tcgaacgaaa gggtgttggt
      781 tcgtaatcac cgccgaggtg agtgggcatt gatgatgaga gcgatcaagt gccttaaggg
      841 cgttcggtgg atgccttggc gctgagaggc tatgaaggac gtgctacgct gcgataagcc
      901 acggggagct gcgaagaagc tttgatccgt ggatttccga atggggaaac ccacttccga
      961 taacggaatt ccgagaccat gttcacaagg cgcacagccg agcgaacgac gggatcggat
     1021 tcgtctgacc ttcacacatc gtttgaaccg caaggtgcaa gcgtgtgtgg tttcggactt
     1081 ccgttatcaa aaggaggtat gagatctctg aataaaatag gaggtttcaa gcaaacccag
     1141 ggaactgaaa catctcagta cctggaggaa aggacatcaa ccgagactcc gctagtagtg
     1201 gcgagcgaac gcggaccagg ccagtgataa tccaaagaca accggaaacg
//
LOCUS       DATCGC010001124         1215 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_318180, whole genome shotgun sequence.
ACCESSION   DATCGC010001124 DATCGC010000000
VERSION     DATCGC010001124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1215)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1215)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1215
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_318180"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(47..724)
                     /locus_tag="VIJ87_10890"
     CDS             complement(47..724)
                     /locus_tag="VIJ87_10890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444954.1"
                     /translation="MKMTRFLCCSLGVFGWWILSALAAMAQASPTPSRHTLIEILSDS
                     ALWGKNFPMVLASLRSWDQAGQRSVLVFPNRIVGGTPLSSPEKARETSRSIAETMTTR
                     PFKPKPQFQAMFGTSQLTPHLKTEIIARFQDDDSARVVATQPDAQFFAPDLTIDKVKE
                     RLGAPEKVEQQVIQSEGDRRPVILTLNRYAGGAVVFAQSDVAARPESVNRVLLDASAV
                     MNAIEAK"
     gene            969..1103
                     /locus_tag="VIJ87_10895"
     CDS             969..1103
                     /locus_tag="VIJ87_10895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444955.1"
                     /translation="MGNSEATFRLRFDSDGRVSGSYTQGGETYRLEGRNSSERLQLDE
                     "
BASE COUNT          294 a          324 c          320 g          277 t
ORIGIN      
        1 aagcaaacga atttgctgac tccgaaggaa acttcctttt cttttttcac ttggcttcga
       61 tcgcattcat tacggcagaa gcatccagca gaactcggtt aaccgactcc ggacgcgctg
      121 cgacatccga ctgtgcaaag acaaccgccc cacccgcgta gcggtttagc gtcagaatta
      181 cagggcgacg gtccccttca ctttgaatga cctgctgctc gactttttca ggcgccccga
      241 ggcgctcctt caccttatca atcgttagat cgggggcgaa gaactgcgca tccggctggg
      301 tggcaaccac gcgcgcggag tcatcatcct ggaaccgtgc gatgatctcg gttttgaggt
      361 gtggagttag ctgcgacgta ccgaacattg cctggaactg cggcttgggt ttgaatggtc
      421 gcgtggtcat tgtctcggcg atgcttcttg aggtctctct cgccttttca ggcgatgaga
      481 gcggtgtacc tccaacaatc cggtttggaa aaacaaggac tgagcgctgg ccggcttggt
      541 cccaactgcg cagcgaagcc agcaccatag gaaaattttt tccccacagt gcagaatcac
      601 tgaggatttc gataagcgtg tgcctcgatg gagtgggcga tgcctgagcc atggcagcaa
      661 gagcgctcag tatccaccag ccgaagactc caagcgagca gcaaagaaat cgtgtcattt
      721 tcatgtgacc acctcgatct gcgaagtttc tgttcaggta acacggaatt gcaagcccaa
      781 agtctcaaaa aacatcaata aacaatgtga ccacgtgggg ttttggggaa cgaccaaaga
      841 gttcacgatg tgaaccctac cctgacccta ctgcccttgc ttccatattt tccgatcaat
      901 tgtgttttca ttacgcaaat cgctccgcaa caaggaaagc cgtgcctcta gttagggagt
      961 tggggagggt gggaaattcg gaagcgacct ttcgcttgcg tttcgactcg gacggacgcg
     1021 tcagcggatc gtacacacaa ggcggcgaga cgtatcgtct cgaaggccgc aattcgtcgg
     1081 aacgcttaca gctcgatgag taacacggga gaccgattga cagctcatct cgatctcact
     1141 ctgaacagtt caaaaagaga ggttcgctgg gaaggtcgaa ttcaaaatgt ttaccccgac
     1201 acgaacaact atccg
//
LOCUS       DATCGC010001125         1357 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_413926, whole genome shotgun sequence.
ACCESSION   DATCGC010001125 DATCGC010000000
VERSION     DATCGC010001125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1357)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1357)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1357
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_413926"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1018)
                     /locus_tag="VIJ87_10900"
     CDS             complement(<1..1018)
                     /locus_tag="VIJ87_10900"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY5444956.1"
                     /translation="MIGQRLSNRYDIKSELGRGGMGVVYRAADPLLNRDVAIKLIPPT
                     LLNPDTEQRFQREAQLVAQMDHPAVVPIFDYGKHEGSLFFVMPVVEGTNLRWFQRDGT
                     LTLGEVIDIGVQVAEALEYSHSRNVTHRDIKPENIMVVREDSNRLRVRIMDFGLARGA
                     AESKITKTGTIAGTLSYMSPEQVAAGGIDHRTDIYSLGTVLYECLTGEPPFSGELQSI
                     LYRIVHEIPQSPRAMGADINPDLEEVILSCIAKEPGRRPQSASEVADSLRRAQTLVHQ
                     SDLGKSVVMTKTMMMPRVALSPFIGREKEQGELQKRLNAAISGECQFVVVSGEPGVGK
                     TRLLD"
BASE COUNT          330 a          348 c          346 g          333 t
ORIGIN      
        1 catcaagcag ccgagtttta cccacacccg gttcgccgga aaccacaaca aactgacact
       61 cgccactgat cgcagcgttg agtcgtttct gtagttcgcc ctgttctttt tcacgaccaa
      121 tgaacggcga caatgccaca cgcggcatca tcatcgtctt ggtcatcacc actgatttgc
      181 caagatcgct ctggtgcacg agggtttggg cgcgtctcaa tgaatccgca acttcactcg
      241 cactctgtgg ccttctaccg ggctctttcg caatacatga aaggatcact tcttcaagat
      301 ccggattgat gtccgcgccc atcgcacgcg gcgactgggg gatctcatga acaatgcggt
      361 aaagaatcga ttggagctcc cctgagaatg gcggctctcc ggtaagacac tcgtagagaa
      421 cagtaccaag tgagtagatg tccgttcgat gatcgatgcc gccggcagca acctgctccg
      481 ggctcatgta agagagtgtt ccggcgattg tacctgtctt ggtgatctta ctttccgcag
      541 ctccgcgagc gagaccaaag tccatgatgc gaactcgcag ccgattgctg tcttcgcgca
      601 ccaccataat gttttcaggt ttgatatcgc gatgcgtcac attacgcgag tgactgtatt
      661 cgagtgcttc ggctacctgc actccaatgt cgattacttc gccaagtgtc agcgttccgt
      721 cacgttggaa ccagcgaaga tttgttcctt cgacaaccgg catcacaaaa aacaacgagc
      781 cttcatgctt gccgtagtcg aagatgggaa caaccgccgg gtgatccatc tgcgccacca
      841 gctgagcttc acgctgaaac cgttgttcgg tgtcagggtt gagcagtgta ggaggaatta
      901 gtttgatggc gacgtcacga ttgagtaagg gatcagcagc gcgataaacc acacccatcc
      961 caccgcgacc caattcagac ttgatgtcgt agcgattaga aagtctttga ccaatcatcg
     1021 aggtacctaa taagggctct ggattaaatt agagaacaac agtctgggaa ctgttgtgta
     1081 gcggaaaaat gacgccttgt aaggcgtcag gacgctaaat gctaaagcgg aatcgaatgc
     1141 gtcaatgata gggcacgcga gtgtgattgt atagcgagca gtctaaaata gtgagaaagg
     1201 tattgagtgt ccttttcgta cccaattttc atggaaggtg gacgcgctct tctgggaccg
     1261 cctctggaga ttgaacaagc ggtcccggaa gagcgcttcc tttagtttgt tctggttgtc
     1321 tcatcaaaat accagtttga cttcgttaag aattttc
//
LOCUS       DATCGC010001126         1433 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_449973, whole genome shotgun sequence.
ACCESSION   DATCGC010001126 DATCGC010000000
VERSION     DATCGC010001126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1433)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1433)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1433
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_449973"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..271
                     /locus_tag="VIJ87_10905"
     CDS             <1..271
                     /locus_tag="VIJ87_10905"
                     /inference="COORDINATES: protein motif:HMM:NF024674.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YmdB family metallophosphoesterase"
                     /protein_id="HEY5444957.1"
                     /translation="LGTHTHVQTADERILPEGTAYLTDLGMTGSYAGVIGMSKTDVIA
                     RFTTVPARRAEHASGSVRICAAILDLDDASGKARSIERLSLSHEQ"
     gene            complement(278..1201)
                     /locus_tag="VIJ87_10910"
     CDS             complement(278..1201)
                     /locus_tag="VIJ87_10910"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5444958.1"
                     /translation="MRRCLIHVGLFVLLVLIVVSASAQTPNSAINHYRDGAAKVGKGD
                     LDGAIEEYSRAIAISSRLAPANSATAEANNVRVVDPFTANAYVNRGVARYRKGDFEGA
                     KSDFDSALLIRPGLATAYLNRSASKRALGDWTGASADINKAISIDPKLFEAYSNRGAL
                     KHDMGDVAGAIADFDKAISLNSKVAEPFYLRGYAYISAKNYSGAVADFDRALKLTPEM
                     ALIYQGRGTALMCQGKFDQAIADFNHAIELQPGIVWAHFNRGLALLVKGDEVGAQSDF
                     DLCLKLRPSLKAEIEQRIEVARELRQEKQKP"
BASE COUNT          346 a          365 c          368 g          354 t
ORIGIN      
        1 attaggcaca cacacacatg tgcaaactgc tgacgaaaga attcttcctg agggcactgc
       61 ctatctcaca gacctcggaa tgactggaag ctatgccggc gtcattggaa tgagtaagac
      121 cgacgtgatt gctagattca caaccgtccc tgccaggcgg gctgaacacg cgagtggcag
      181 tgtgcggatc tgcgcggcga tactcgatct cgatgacgca tcgggcaaag cccgttcaat
      241 cgaacgtctg agccttagtc acgagcaata gacgaaatca aggtttttgt ttttcttgac
      301 gtagctctct cgccacttct atacgttgct ctatctcagc ctttagcgaa ggtcgcaatt
      361 tcagacagag atcaaagtca gactgagccc ccacctcgtc acctttaacc aacagtgcta
      421 gaccccgatt gaagtgggcc cagacaatgc caggttgcag ttcgatcgca tggttaaagt
      481 ctgcgatggc ctgatcgaat tttccctgac acatcaaggc tgttccgcga ccctgataaa
      541 taagcgccat ctccggagta agcttcaaag cgcggtcgaa atcggcgacc gcacctgagt
      601 aattctttgc gctaatgtaa gcgtagccgc ggagatagaa tggttccgct actttagagt
      661 taaggctaat cgccttatca aaatccgcta tcgcaccggc gacatcaccc atgtcgtgtt
      721 tgagtgcacc gcgattgctg tacgcttcaa atagcttggg atcgatcgat atcgccttgt
      781 tgatatcggc tgatgcaccg gtccaatcgc caagtgctcg tttggaggcc gagcgattga
      841 gatatgcagt ggctaatccg ggccgaatta agagtgcaga atcaaagtcg gacttagctc
      901 cttcgaagtc accctttcga tagcgagcta cgccccgatt gacgtaggca tttgccgtaa
      961 atggatcaac aacccttacg ttgtttgcct ctgcggtcgc agagtttgct ggagcgagcc
     1021 tggagctaat tgcaatagcg cgcgaatact cttcgattgc gccatcgaga tctcctttac
     1081 ccactttagc tgcaccgtcg cggtagtgat tgatagcgct gtttggagtt tgagctgatg
     1141 cagagacgac aattaagacg aggagaacga atagaccaac atgaattaga cagcggcgca
     1201 tggcagacct tcctccttac tcattgaaga tcgtgcgctg tacccggttc tacaggacta
     1261 tgttgtcctg ggggtgagta gtctcaggag cgcatcattg gatttgtttc caaaacttca
     1321 aagttgaagc ccgtccacca tgtgcgctaa gatgtgggtg tcgacgatac atcttccacg
     1381 ctgaaaggcg aaagagcttg tgttgtcatc tgggcctcgt tgctattgca agt
//
LOCUS       DATCGC010001127         1333 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_20236, whole genome shotgun sequence.
ACCESSION   DATCGC010001127 DATCGC010000000
VERSION     DATCGC010001127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1333)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1333)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1333
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20236"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            105..407
                     /locus_tag="VIJ87_10915"
     CDS             105..407
                     /locus_tag="VIJ87_10915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444959.1"
                     /translation="MATAKKTSSDGGTIFKGSDGSLYFVRDEMLDALRVEGEGLERLD
                     EQLKGAKGGAKDAGSIKPIGYVKGSLLRQDPRNTTARAKSARVTARASTIMCPWFC"
     gene            513..>1333
                     /locus_tag="VIJ87_10920"
     CDS             513..>1333
                     /locus_tag="VIJ87_10920"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY5444960.1"
                     /translation="MNYVQGRDIHDADSHLLEHPDWLKPYLSSAVRQQVPSLDLHGLE
                     AEATQALEQHRAGTRPIIEDAAELMTYKNWAALGAFDTAERSQALNLLGFKSQLVFST
                     YSHLGMIDHGGAATLDPDVLYEIVDGHNRGVVDFCAADQRLLPVGFVAPHLPERAIAA
                     TQRALDLGCAGIELPSLPCGDYSLTHTDFDPLYAMLQERGRPLLFHVGGGGRLVHPTF
                     AATGRVPEQVHHDRETLIPSLTYMGIPAPLEMALGALILDGVFERFPGLRCGVIE"
BASE COUNT          303 a          369 c          359 g          302 t
ORIGIN      
        1 cgctagcctc cacgtcttaa ggacagaatt agcgaaactg ctgagccgtt acgctaagtg
       61 tctcaactca aacttctcac atgttctaaa ggaggtaatc tcatatggct acggcaaaga
      121 aaacttcttc agatggggga accatattca aaggatccga cggttcgctc tacttcgtgc
      181 gcgacgagat gttggacgcg cttagggtcg aaggggaagg ccttgaacga ttagacgaac
      241 agttgaaagg tgccaagggt ggtgcaaagg acgccggaag cattaagccc attggctacg
      301 tcaaaggatc gttgcttcgt caagatccac gcaacacaac cgccagggca aagtcagcaa
      361 gagtaacggc cagggcgagc acgattatgt gcccctggtt ctgttaactc gagctggaca
      421 tctacacttc attaatcaca gaacgatcgt gattctcgtg ccccggcttt tcctcagtcg
      481 gggcactttt acaacgacta actcacttcg ccatgaatta cgttcagggt cgcgacatcc
      541 acgatgcaga ctcccatctc ctggaacatc ctgattggtt gaagccatac ctaagctcag
      601 cggtgcgtca acaggtacca tcgcttgact tacatggact cgaagccgag gcgacccagg
      661 cgttggaaca acatcgagcc ggcacacgac caattattga agatgccgcg gagttgatga
      721 cgtacaagaa ttgggctgcg ctcggtgcct tcgataccgc agagcgctca caagcgctaa
      781 acctactcgg gttcaagtca caactcgtct tctcgaccta tagccacctg ggcatgatcg
      841 atcatggtgg agcagcgaca ctcgatccgg acgttttgta tgaaatcgtc gacggtcaca
      901 atcgcggagt cgttgatttc tgtgcggctg atcagcggtt gctcccggtg ggatttgtcg
      961 cgcctcatct tcccgagcga gccatcgcag ccacgcagcg cgccctggat ctagggtgcg
     1021 ccggcatcga attaccgagt ttgccgtgcg gtgattacag cttgactcat actgacttcg
     1081 atccgctcta cgcaatgctg caagagcgcg gccgcccgct actgttccac gtcggaggcg
     1141 gcggtcggtt agttcatccg acgtttgctg ctactggacg cgtccctgag caagttcatc
     1201 atgatcggga aactttgatt ccttcgctaa cttatatggg cattccggcg cccctcgaga
     1261 tggcgctcgg cgccctgatt ctcgacgggg tcttcgaacg ctttccagga cttcggtgcg
     1321 gagtgatcga gca
//
LOCUS       DATCGC010001128         2156 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_249482, whole genome shotgun sequence.
ACCESSION   DATCGC010001128 DATCGC010000000
VERSION     DATCGC010001128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2156)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2156)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2156
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249482"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(60..629)
                     /locus_tag="VIJ87_10925"
     CDS             complement(60..629)
                     /locus_tag="VIJ87_10925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444961.1"
                     /translation="MQIHVVLLLVLLIFGSQTLAQTSSKSPEPPPQRDGQHDFDFEIG
                     LWKTNLRRLVRPLTGSTTWVEYEGTSRVSKLLDGRANLVELKVGGPAGRIEGLSLRLY
                     NPDSHEWSLNFANINAGTLTIPTIGEFKDGRGEFYNQDTLNGRSILVRFVISDITPNS
                     CRFEQSFSADGGRTWELNWVAVDTRIPGQ"
     gene            complement(826..2115)
                     /locus_tag="VIJ87_10930"
     CDS             complement(826..2115)
                     /locus_tag="VIJ87_10930"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEY5444962.1"
                     /translation="MNNEGLNRAIRKWDLVALLVNVTVGAGILKLPSDVQRLVGNYSL
                     LAFVVCGLIIALIALCFAEVGSRFSGTGGPYLYARETYGPTPAFLVGWLMWLTRLAGL
                     ATLVQVFISYLGYFWPAAESGLPRVAIIILLVVVLTVINLVGVKESARASDVFTISKL
                     IPLLIFVAVGLFFIAPSRFTLAAAPGLGSFSAAVFVLVYVFSGFEAVLVNSGEVRTPS
                     RVIPFALIVALSSAVVLFLLIQVVCIGVLPNLANSQRPLADASQIFLGTLGPVIISAG
                     ALISIFGTLNVIMLACTRLPFAMANQGQLPAPLARVHERFRTPHLSILISAAAALMLA
                     LPGSFIYAVKVTVVTRVLVYASTCAALPLLRRRDRAEQKTPDSFAAPLGIPISIVCVG
                     LCVWLLVNSGWREARDVLIATAIGLVIYAITRSRHDV"
BASE COUNT          587 a          553 c          570 g          446 t
ORIGIN      
        1 gactgtggcc aacaaccgat taaactaaat cgagtccgga gccctccttg acagtcgggc
       61 tactgccccg ggatccgagt gtcgaccgca acccaattaa gctcccaggt ccgtccgcca
      121 tctgcggaaa atgattgttc aaatcgacat gagtttggag tgatatcgga aatgacaaaa
      181 cgaaccagaa tggatcgacc gttcaaagtg tcctggttgt agaactcacc acgaccgtct
      241 ttgaattcac caatggtggg aatagtcagt gtgccggcgt tgatgttcgc gaaattcaga
      301 ctccactcat gtgagtcagg gttgtagaga cgcaggctaa gaccttcaat acgacctgct
      361 ggaccgccga ctttgagttc taccaaattg gcgcgtccgt ccagcagttt gctcactctg
      421 gaagtgccct cgtattcgac ccacgtcgtg gagcccgtta atgggcgaac gagacgacgt
      481 aaattagtct tccaaagccc aatttcaaaa tcaaagtcgt gttgcccatc tcgctgtgga
      541 ggcggttctg gagactttga cgacgtctgg gccagagttt gtgaaccgaa gatcaacaag
      601 actaggagaa gtacgacatg tatttgcatg ctcactcact ttcaaaaaca aaggtaaatg
      661 aaactaatct tagtaattaa ttcggtcaag acgttacctc aaggtaactg aaggatcaga
      721 aaaagggatg tatttccact aggtatcgtc aaggcagcgg acttgagagt ttcgaacccc
      781 accgtcttta ctctgtgatc atctgttgat attcgaatcg tgggtttaca cgtcatgacg
      841 actgcgggtg atggcgtata tcactagtcc gatcgctgtt gctatcaata cgtcgcgtgc
      901 ctcgcgccag ccactattca ccagcagcca aacacaaagc ccaacgcaaa caatcgagat
      961 cggaattccc aacggcgccg caaatgagtc cggcgtcttt tgctcagctc gatcgcgccg
     1021 acggagaagt ggcagcgcag cacacgtgct cgcatagaca agaacccgcg tgactacagt
     1081 gaccttgacc gcgtagatga acgaacccgg caaagcgagc attagtgcgg cagcggcaga
     1141 aatcaggatt gacaaatgag gagtacgaaa tcgctcgtgc acgcgcgcaa gtggcgctgg
     1201 cagttggccc tggttcgcca tcgcaaacgg caaacgcgta cacgcaagca tgatcacatt
     1261 cagtgttccg aagattgata ttagtgctcc tgccgagatg atcactggtc ctagagtgcc
     1321 gagaaaaatc tggcttgcat cggccagtgg tcgttgagag ttcgcgaggt ttggcaagac
     1381 accaatgcag acaacttgaa tcaacagaaa cagcacgact gccgaactca aagcgacaat
     1441 cagcgcaaaa gggataacgc gtgagggcgt gcgcacctcg ccggagttga ccagcactgc
     1501 ttcgaatccg gagaacacgt agacgagtac aaatacggcc gccgagaatg atccgagacc
     1561 tggtgcggca gccagtgtaa agcgcgatgg ggcaataaag aacaatccca ctgccacaaa
     1621 gatcagaagg ggaatcagtt tactgatagt gaacacgtca ctcgctcgag ctgactcttt
     1681 gacgccgact agattaatga cggtgagaac aactactaga agaataatga tagcaacgcg
     1741 tgggagtccg gattcagcag cgggccagaa gtatccgagg taggaaatga agacctgaac
     1801 gagcgtggcg agtcccgcga gtctcgtcaa ccacatcaac cagccgacga ggaacgcggg
     1861 cgttggtccg tatgtttctc tggcatagag atacggacca ccagtgccac tgaaacggct
     1921 accgacctct gcgaaacaga gtgcaatcag cgcgatgatg agcccacaaa caacgaacgc
     1981 cagaagactg tagtttccga cgagtctttg cacgtccgac ggaagtttga ggatgccggc
     2041 gcctaccgtg acattcacga gtaaggcaac gagatcccac ttccggattg ctcgattcag
     2101 gccttcattg ttcaagcgtg ttcgatgctc gatgtccgat atgctttagc ttgtcg
//
LOCUS       DATCGC010001129         1248 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_148945, whole genome shotgun sequence.
ACCESSION   DATCGC010001129 DATCGC010000000
VERSION     DATCGC010001129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1248)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1248)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1248
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148945"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..907
                     /gene="dnaA"
                     /locus_tag="VIJ87_10935"
     CDS             <1..907
                     /gene="dnaA"
                     /locus_tag="VIJ87_10935"
                     /inference="COORDINATES: protein motif:HMM:TIGR00362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA];
                     GO_process: GO:0006275 - regulation of DNA replication
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HEY5444963.1"
                     /translation="NPLFVYGGVGLGKTHLMHAVGRYVLQHNPSFRLTYISSERFMNE
                     MINAVRYDRILDFRERYRSVDILLVDDIQFVSGKEGTQTEFFHTFNALYDAQKQIVLS
                     SDRPPHEIPALEERLRSRFEWGLIADIQPPDLETKVAILKRKAEAEAVPLPDNVAIYI
                     AGRIKSNIRELEGSLIRLIAYASLTGREISLELTQEVLKNVIDSDEKAVTIETIQKFV
                     SDYYQLKLFELKSKNNSKSIALPRQIAMYLCKTLTHASLPEIGRSFGGKHHSTVIHSI
                     KKVEEMRKTDGDFNSLMTNFLESFR"
BASE COUNT          309 a          334 c          316 g          289 t
ORIGIN      
        1 caacccgctg ttcgtgtatg gcggagtggg gctcggcaag acgcacctga tgcacgccgt
       61 tggccgctac gtgctgcagc acaacccgtc gttccgcctc acgtacatct cgtccgagcg
      121 tttcatgaac gagatgatca atgccgttcg ctacgatcgc attctcgact ttcgtgagcg
      181 ataccgaagc gtggacattc tcctcgtcga cgacattcag ttcgtctccg gcaaggaagg
      241 tacgcagacc gagttctttc acacgttcaa tgcgctctac gacgcgcaga agcagatcgt
      301 gctcagcagc gatcgccctc cacatgaaat cccggcgctc gaagaacgtc tgcgatcgcg
      361 cttcgaatgg gggttgatcg cggatatcca gccgccggat ctggaaacga aagtggctat
      421 cttgaaacgc aaagccgagg ctgaagccgt tccgctcccc gacaatgtgg ccatttacat
      481 cgccggacgg atcaagtcga acattcgcga actcgagggc tcgctcattc gactcattgc
      541 gtacgcgtca ttgacaggac gcgagatttc gctcgagttg acgcaggagg ttctgaaaaa
      601 cgtcatcgat tcggatgaga aggcagtaac gatcgagacg attcagaaat tcgtttctga
      661 ctattaccaa ttgaaattgt tcgagctgaa gtcgaagaac aattcgaagt cgatcgcgct
      721 tccgcgacag atcgcgatgt acctctgcaa gacgctgacg cacgcgtcgc ttccggagat
      781 cggacgaagc tttgggggaa agcaccattc aacggtcatt cactcgatca agaaggtgga
      841 ggagatgcga aaaacggatg gagatttcaa cagcctgatg acgaatttcc ttgagtcttt
      901 ccggtgattt caacagcggc tcacagctga gctcgaggac tgattgtgca cggttcggga
      961 ggtcgaaata cccacaaaaa accaacgcct tcacgcgttt ggattcacag atttttccac
     1021 acgctaaatt attgaattaa aaggattaat ctttaacaat ccttctttgc acagcccctt
     1081 attttcagta taattcttta tctcttctgc tcctctattt cagagcgaaa gaacctgact
     1141 gaaggctcct tcacagcgga tcaaccgcgc tgcttcgagg tcacagcacc atatggaact
     1201 cgtcgttggg aagaaccagc ttctgcgaga actgcaactt ttccaggg
//
LOCUS       DATCGC010001130         1260 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_450097, whole genome shotgun sequence.
ACCESSION   DATCGC010001130 DATCGC010000000
VERSION     DATCGC010001130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1260)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1260)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1260
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_450097"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..852
                     /locus_tag="VIJ87_10940"
     CDS             <1..852
                     /locus_tag="VIJ87_10940"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY5444964.1"
                     /translation="DVKGRFLWKVDLGRLDLGAYDIPTYEWGPASSPIIWQNLVILQC
                     DTQSDSFLLALDASTGKTVWKTDREEIPSWGTPTVVNTSTGPQLITNASNYIRGYDPR
                     NGKELWRLGGSSKITAPTPVFSEDLIVVVSGRGPERPIFVVRPNARGDVTLQDGKKTS
                     DSIVWSMTGRGSYMPTPLVYKGTLYVLANGGLFDAYDLKTGKEVYRQRLPTVGSGFSA
                     SPIAADGKIYLSNEDGEMLVIAAGEKFSHIATNSMGELLMATPALSEGVMYVRSSESV
                     FAIGRKH"
     gene            878..>1260
                     /locus_tag="VIJ87_10945"
     CDS             878..>1260
                     /locus_tag="VIJ87_10945"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEY5444965.1"
                     /translation="MKKLWAIGVFVFAIAICIVLWQVSRSRTYQFFGQLVARVNTSQK
                     SVALTFDDGPTPRATDEILSILEEEHIHATFFVIGGELETNMAEAKKIVSAGHELGNH
                     TYSHERMLLVSPSFVKQEIESTDKL"
BASE COUNT          304 a          295 c          348 g          313 t
ORIGIN      
        1 gacgtcaaag gtcgctttct ttggaaggtt gatctgggtc gtttggatct cggggcctac
       61 gacattccga cgtacgaatg gggaccggca agctcgccga taatctggca gaaccttgta
      121 attctccaat gcgacacaca aagcgattcg ttcctgctgg cgcttgacgc ttccaccggt
      181 aagacggtgt ggaagactga tcgtgaagag atcccttcgt ggggcacgcc gaccgttgta
      241 aacacttcta cggggccgca gctaataacc aacgcgtcga attacattcg cggctatgat
      301 ccgcgaaatg gaaaagagct ctggcgactc ggcggtagtt caaagataac tgcgccaacg
      361 ccagtgttct ctgaagatct aatcgtcgtc gtcagtggtc gtggtcccga aagacccatt
      421 tttgttgttc gccccaacgc tcgaggcgat gtcactttgc aggatggcaa gaagacgagt
      481 gattcgattg tttggagtat gactggtcgc gggtcgtata tgccgacacc gctggtctac
      541 aaaggcacgt tgtatgtgct ggcaaacggg ggtctgttcg acgcttacga cctgaagacg
      601 gggaaggaag tttaccgaca gcgtctgcca acagttggta gcggcttcag cgcctcacca
      661 atcgcggcgg acgggaagat ttatctctca aatgaagacg gcgagatgtt ggtcattgct
      721 gctggcgaaa agttttcgca tatcgctaca aactcgatgg gtgaattgtt aatggcaaca
      781 ccggcgttgt cagaaggcgt gatgtatgtg agatcgtccg agagtgtgtt tgcgatcggc
      841 cgaaaacatt gaccatttta tggtgccgag ttttcgaatg aagaaactct gggcaattgg
      901 cgtctttgtt tttgccatag ctatctgcat cgtactctgg caagttagtc gctcgcgaac
      961 ttaccagttc tttggacagc ttgttgcgcg cgtcaatacc tcccaaaagt ccgtagcgct
     1021 aacgttcgat gatggcccaa ctccgagagc tactgatgag atcctttcta ttctcgaaga
     1081 ggaacacatc catgccacgt tctttgtaat tggtggcgag ttggaaacaa acatggccga
     1141 ggcaaagaag atcgtaagtg ctggccacga attgggaaat catacgtatt ctcacgaacg
     1201 aatgttgttg gtctcaccat cattcgttaa gcaggaaatc gaaagcaccg acaagttgat
//
LOCUS       DATCGC010001131         1086 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_249517, whole genome shotgun sequence.
ACCESSION   DATCGC010001131 DATCGC010000000
VERSION     DATCGC010001131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1086)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1086)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1086
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249517"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1086
                     /locus_tag="VIJ87_10950"
     rRNA            <1..>1086
                     /locus_tag="VIJ87_10950"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          302 a          244 c          345 g          195 t
ORIGIN      
        1 caaccgagat tccgttagta gtggcgagcg aaagcggacc aggccagtag ctacgatgtt
       61 gcaaccagaa ccgtctggaa aggcgggcca gagtgggtga tagccccgta tgggtaatca
      121 acgtcgtagt tcttgagtaa ggcgggacac gagcaatcct gtctgaagat ggggggacca
      181 ccctccaagc ctaagtactc ctcagtgacc gatagtgaac aagtaccgtg agggaaaggt
      241 gaaaagcacc ccgatgaggg gagtgaaata gaacctgaaa ccgaatgcct acaagcagtg
      301 ggagcggccc tgagccgtga ccgcgtacct cttgtataat gggtcagcga cttagtctta
      361 cgagcaagct taagccgata ggcggaggcg tagcgaaagc gagtctgaat agggcgcttg
      421 agttcgtagg attagacccg aaaccgggtg atctagccat gggcaggctg aaggtgcggt
      481 aacacgtact ggagggccga acccacgtct gttgaaaaag acggggatga cctgtggcta
      541 ggggtgaaag gccaatcaaa ctcggaaata gctggttctc cgcgaaatct atttaggtag
      601 agcgtcaggc gttcaccgac gggggtagag cactggatgg gctagggggg agcgatcctt
      661 accaaaccta accaaactcc gaataccgtc gggttagagc ctggcagaca gactacgggt
      721 gctaaggtcc gtggtcgaga ggggaagagc ccagaccgcc atctaaggtc cccaagttat
      781 ggctaagtgg gaaaggaagt gggaaggcca agacaaccag gaggttggct tagaagcagc
      841 catcctttaa agaaagcgta atagctcact ggtctagaca agccgtcctg cgccgaaaat
      901 gtatcggggc taaagccata caccgaagat gcggatttga tgatcctacg ggatcctcaa
      961 gtagtagcgg agcgttccgt aagcctgcga agggtaatcg cgagattacc tggaggtatc
     1021 ggaagtgaga atgctgacat gagtagcgac aaagagtgtg agaaacactc tcgccggaag
     1081 tccaag
//
LOCUS       DATCGC010001132         1353 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_382437, whole genome shotgun sequence.
ACCESSION   DATCGC010001132 DATCGC010000000
VERSION     DATCGC010001132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1353)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1353)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1353
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_382437"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            77..1303
                     /locus_tag="VIJ87_10955"
     CDS             77..1303
                     /locus_tag="VIJ87_10955"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HEY5444966.1"
                     /translation="MKALLLALATLISSSLGAPHFSPYTHDSGLFALSEATSQQSGED
                     SAEVKSLVEKLTSSIASERAAAACRLGELKATAAIPALVKLLADDTEVIQPVCGDKSG
                     WGDAGNPNKTTPGEVAAVALSRMGRQAVEPLIGALKADAWPARSNAAYGLGLIKDERS
                     VEPLIAATKDAAWQVRARAAWSLGLVGDSRSIQPLLIALQDTEEKVRTQAAWALGLKG
                     DDSAVEGLIRALSDSSSKVQTQAAWALGLKGDSRAVEPLMAALSNSDANVRTQAAWAL
                     GLKGDARAVEGLSAALNDSNSKVQAQAAWALGLKGNSRAIEPLTIALRSSDPYVRAQA
                     AWALGLKGDSRAVEPLIAALRDNDADVRRQAAWALGLKGDQRAIEPLRSALNDQDAEV
                     RKQAEWALGMRRMQEQ"
BASE COUNT          342 a          337 c          394 g          280 t
ORIGIN      
        1 aaaacctcag atcaagtcgc cacaaagata cggtttgcgg tgttacctca ttgaagtcca
       61 ctcctgaggt caatccatga aagcccttct actagcactt gcaacgctta tctcttcttc
      121 attaggcgcc ccgcacttct cgccttacac gcacgactca ggcttgtttg ccttgtctga
      181 agccacgtcc cagcagtccg gagaagattc ggccgaagta aagtcactag tcgagaaact
      241 gacttcctca atagcgagtg aacgtgcggc agctgcgtgc cggcttggtg aactaaaagc
      301 gacggctgca attccagcgc tggtgaagct actcgcggac gatacagaag ttattcagcc
      361 ggtctgtggt gataaatccg gatggggtga tgcgggaaac cctaataaaa caacgccagg
      421 ggaagttgcc gctgttgcgt tgtcacgaat gggacgacag gccgttgaac cactaattgg
      481 agctctgaaa gcagacgcgt ggccggctag atcaaatgcg gcgtatggat taggactgat
      541 aaaggatgaa cgatctgtgg aaccattgat tgccgcgacg aaagacgccg cctggcaagt
      601 gcgcgcgcga gccgcatggt ccctgggcct ggtaggagat tcacgatcga ttcaaccact
      661 cttgattgca ttgcaagaca cggaagaaaa agttcgtaca caagccgcat gggcgttggg
      721 attgaaaggc gacgatagcg ctgttgaagg attgatcaga gcgcttagcg attcgagttc
      781 gaaggttcaa acacaagctg cgtgggcgct tggtctcaaa ggcgattcgc gggcggttga
      841 accactgatg gccgccttaa gtaatagcga cgccaatgtt agaactcagg cagcgtgggc
      901 actgggatta aaaggcgacg ctcgcgccgt tgagggtttg agcgcagcac tcaacgattc
      961 gaattcaaag gttcaggctc aagctgcgtg ggcactcggt ctgaaaggta actcacgggc
     1021 catcgaacct ctcacaatcg ctctgcggag cagtgatcca tacgttcggg ctcaagctgc
     1081 ctgggctctc ggcttgaaag gtgattcgag ggcagtggaa ccgcttattg cggctctgcg
     1141 cgacaacgat gccgatgtca gaagacaggc agcgtgggca cttggtctga aaggtgatca
     1201 gcgagctatc gaaccgctac gatctgcgtt gaatgaccag gacgcagagg tacgcaaaca
     1261 agccgaatgg gcgctgggaa tgagacgaat gcaggagcag tgagactcgc agatctcaaa
     1321 tctcaaatcc cagatctcag attggcccta tta
//
LOCUS       DATCGC010001133         1360 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_20313, whole genome shotgun sequence.
ACCESSION   DATCGC010001133 DATCGC010000000
VERSION     DATCGC010001133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1360)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1360)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1360
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20313"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..358)
                     /locus_tag="VIJ87_10960"
     CDS             complement(<1..358)
                     /locus_tag="VIJ87_10960"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEY5444967.1"
                     /translation="MRVLVTGGAGYIGSVVTEGLVNDGHHVVVYDNLSKGHRKSVNAE
                     AEFVEADLHDVSTLRNTFRKHQIDSVIHMAASSLVGESCTNPAKYYDNNVVAGLKLLD
                     AMIESNVKRIVFSSTAA"
     gene            complement(477..1238)
                     /locus_tag="VIJ87_10965"
     CDS             complement(477..1238)
                     /locus_tag="VIJ87_10965"
                     /inference="COORDINATES: protein motif:HMM:NF014630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-type zinc ribbon domain-containing protein"
                     /protein_id="HEY5444968.1"
                     /translation="MKAELQKLVALQNLDTTIRKLEKDLESIPQRRAEIEGEFDQRAF
                     EIRALENRRDEAKHVRARLENEVVEQKGRAERAERNLMSSKKQDEYTAAIREADAARK
                     QISTLETQILETLESLEQAEAALNERAEEIASLNSDREARLKLFDEETSAQSAKLKTA
                     RSERDQVFGSLPKALGVQYGRISTKIRDGVAVAEARNRSCTACFMSLRPQVMSEIRRG
                     EEVITCDNCGRILFYIPSDSLQADKATAQSNVVVH"
BASE COUNT          308 a          366 c          327 g          359 t
ORIGIN      
        1 tagcggccgt cgacgaaaac acaatccgtt tcacattcga ctcgatcatt gcatcaagta
       61 gtttcaatcc ggcgaccacg ttattgtcat agtacttggc cgggttggtg caagactcgc
      121 caacaagaga cgacgcggcc atgtggatca ctgagtcgat ttgatgtttg cgaaaagtgt
      181 ttcgcagtgt ggatacgtcg tggagatcag cttcaacgaa ctcagcctca gcattaaccg
      241 atttcctgtg acccttgctg agattgtcgt acacaacaac gtgatgaccg tcgttgacta
      301 atccttcagt aaccacactt ccgatgtagc cggctccacc tgtgacaagt acgcgcatat
      361 gaaatttgta ggggcggcac tccttggccg cccctcttca ttaatctatc acgcctgaaa
      421 tgcgaaaggg gcggccacag agtgccgccc ctaaaagaaa gctcgcagag cccccatcaa
      481 tgtacaacta cgttcgattg ggcggttgcc ttatcggcct gcaacgaatc agaaggaatg
      541 taaaaaagga ttcttccaca attgtcgcag gtgataactt cttctccacg tcgaatctca
      601 gacattacct gcggtctcag cgacataaag caggccgtgc acgatcgatt gcgagcttcg
      661 gccactgcga ctccgtcgcg aatcttcgtg ctaatgcggc catactgcac accaagcgcc
      721 ttgggcaacg atccaaacac ttgatcgcgc tcgcttcgag ctgttttcaa tttggctgac
      781 tgagcacttg tttcttcgtc aaacaacttg agtcgggctt cacgatcgga gttcaaactc
      841 gcaatctctt cagctcgctc gttcaaggca gcctcagcct gttcaaggct ttccagtgtc
      901 tcaagtattt gggtttccag cgtggagatt tgttttctgg ctgcgtcggc ttcccgaatg
      961 gcagcggtat attcgtcctg tttcttggac gacattaggt ttcgttcggc gcgctcagca
     1021 cgccctttct gttcaaccac ctcgttttca agacgcgcgc gaacatgttt tgcttcatcg
     1081 cggcgattct cgagggccct aatttcaaaa gcgcgctgat cgaactctcc ttcgatctca
     1141 gcgcgccttt ggggaatgga ttccaggtct ttttctagtt ttcgtatggt ggtgtccaga
     1201 ttctgcaaag cgactaactt ctgcaattcc gctttcactc tttatgcact cctcaaaaga
     1261 tcaggtctga atattatggc tttcatcgct ttggatcatc acacaaccaa cgggtttgac
     1321 gcaagtcgag ggggaaagca gtaggcagaa gtcaggggca
//
LOCUS       DATCGC010001134         1088 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_450234, whole genome shotgun sequence.
ACCESSION   DATCGC010001134 DATCGC010000000
VERSION     DATCGC010001134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1088)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1088)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1088
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_450234"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(155..>1088)
                     /locus_tag="VIJ87_10970"
     CDS             complement(155..>1088)
                     /locus_tag="VIJ87_10970"
                     /inference="COORDINATES: protein motif:HMM:NF014868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444969.1"
                     /translation="VKRMLKTAEPGFSIDTGENAGETLRNACTEVTSTDDSDICNLGS
                     LNLARFDSLDDFGDAVFHATLFLLAGTVYSHVPYEKVDAVRQKNRRLGLGLMGIHEWL
                     LKRGYSYEPNEELAEWLEYYTKATEYAHYWADRHNLTRPAKTRAIAPTGTIGIIAETT
                     TGIEPIFCVAYKRRYLASGKTWKYQYVVDPTAKRLVDEYGVAPDQIEDAYSLSYNVEK
                     RIAFQAFVQQYVDHGISSTINLPYVITDPDEVEDFGKMLYDYLPRLRGVTCYPDGARG
                     GQPLSAVGYNVAREQEGVVFEESEERCVGGACGI"
BASE COUNT          262 a          315 c          243 g          268 t
ORIGIN      
        1 ccaacgcgcc aagacggatc ggggcacctt cacctttggc gaatgaccct caggccgatc
       61 acaaggatag ccgtcaccac cattgccggg tgcccaccag accaccccat cccacttcac
      121 gcgatagata cagtatctac aatcagcgct gaatctatat accgcaggct ccaccgacgc
      181 agcgttcttc cgactcttca aagaccacgc cttcctgttc acgcgcgaca ttatagccga
      241 ccgcgctcaa gggctgtccg ccccgcgccc cgtcaggata gcaggtcacg ccgcgaagtc
      301 tagggagata atcatacaac atcttcccaa agtcctcaac ttcatccggg tctgtgatta
      361 catacgggag gttgatcgtg gaggatattc cgtgatcgac gtactgctgt acgaaggctt
      421 gaaacgcaat ccttttttcc acattgtatg agagcgagta cgcatcttca atctggtctg
      481 gcgccactcc atactcgtca accaatctct ttgcggtggg atcaacgacg tactggtact
      541 tccatgtttt gcctgacgcc aggtatcgac gtttgtacgc cacacagaag atcggttcaa
      601 tgccagtagt tgtttcagcg ataatcccga ttgtgcctgt tggagcaatt gctctagtct
      661 ttgcaggccg agtaaggtta tggcgatctg cccaatagtg agcgtactct gtcgcctttg
      721 tgtagtattc caaccactct gccaactctt cgtttggctc atatgaataa cctcgcttga
      781 gcaaccactc atgaattccc atcaggccaa ggccaagacg cctgttcttc tgacgaacag
      841 cgtcaacctt ttcgtaaggg acatgactat aaaccgtgcc tgctaatagg aaaagagtcg
      901 catggaatac agcatcacca aagtcatcta ggctatcaaa ccgtgctaga tttagactac
      961 ctaaattaca aatgtctgaa tcatctgtag aggtaacctc cgtgcaagcg ttgcgtagag
     1021 tttcacctgc gttctcccct gtgtcaatag agaaccctgg ctctgccgtc ttgagcattc
     1081 gcttgacc
//
LOCUS       DATCGC010001135         1415 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_382484, whole genome shotgun sequence.
ACCESSION   DATCGC010001135 DATCGC010000000
VERSION     DATCGC010001135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1415)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1415)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1415
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_382484"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..653
                     /locus_tag="VIJ87_10975"
     CDS             <1..653
                     /locus_tag="VIJ87_10975"
                     /inference="COORDINATES: protein motif:HMM:NF013595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444970.1"
                     /translation="ELDPQKQRVSSLLGTGKPGQADGSSPMFYEPGGLTIANGKLYVA
                     DTNNHAIRVVDLKTKETSTLRINGLTPPAKSMASLAETGGPNAETLKVTAQQLRAGAN
                     GFLVINVDLPAGYHLNPSAPQRYTVSVDNEKSISLDQKTASRSAKDLKLPLRIPLTVS
                     SNGLANLRAQVTLFYCREDNTGTCRIKTLVWEAPVEVTNANSAPTEVKLQAKLTAE"
     gene            complement(680..1174)
                     /locus_tag="VIJ87_10980"
     CDS             complement(680..1174)
                     /locus_tag="VIJ87_10980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444971.1"
                     /translation="MYCPQCGQVQTGDVRYCSRCGLSLHEINRWLTGAGELINPEGAK
                     QELSPRRRNILRAAKVAFFSGFLCPVGFVIGQSAREPQWLAIPLMVFVSSLIWMLYCR
                     IFMEGNKPTGNRRQLATAQENYLPPARASLALDAHQINTAEIAQPPSVTEYTTNLLRN
                     REGN"
BASE COUNT          373 a          376 c          343 g          323 t
ORIGIN      
        1 aagaactcga tccgcaaaag caaagagtct cttcgctcct gggaaccggt aaacccggcc
       61 aggcagacgg ttcgtctcct atgttttacg aacccggtgg cttgaccatc gctaacggaa
      121 aactctatgt cgctgacacc aacaatcacg cgatacgtgt ggtcgatctg aagacaaaag
      181 agacgtcaac gttacgaatc aatggtctaa cacctcccgc aaaatcaatg gcttccctgg
      241 cggaaaccgg cggtccaaat gcggaaaccc tgaaagttac ggcgcaacaa cttcgcgccg
      301 gcgcaaatgg cttcctggtt atcaatgtgg atcttccagc cggctatcac ctcaacccgt
      361 cagccccgca gcgctacaca gtgtcagttg acaatgagaa aagtattagt cttgatcaga
      421 aaaccgcatc acgttcggca aaggatctga agcttccatt gcgaataccc ttaaccgttt
      481 cctcgaacgg cctggcaaat ctccgagcgc aagtgactct tttctattgc cgcgaagaca
      541 acacaggaac atgtcgtatc aagacgctcg tttgggaagc gccagtggaa gtgactaatg
      601 cgaacagtgc gccgactgaa gtgaagcttc aagccaagct aacggcggaa tgatggttga
      661 gtcttaagga catctagaac taattgccct cgcggttcct aagcaaattt gttgtgtact
      721 cggtgacgct aggaggctga gcgatctctg cggtgttgat ttggtgggcg tccaacgcga
      781 gggaggcacg agcaggtggt aagtagtttt cttgcgcggt cgccaattga cgtctatttc
      841 ctgtgggctt attcccttcc ataaagatcc ggcagtacag catccaaatc aaacttgaaa
      901 cgaacaccat cagcgggata gccaaccact gcggttctcg agccgattgg ccgattacaa
      961 atccaaccgg acatagaaag ccgctaaaga acgcaacctt cgccgcacga agaatgttcc
     1021 ggcgccgtgg cgataattcc tgcttagcgc cttctgggtt tattagctcg ccggccccgg
     1081 ttagccatcg gtttatttca tgaagagaca ggccgcaacg tgaacaataa cgaacatcac
     1141 cggtttgaac ttgaccgcat tgtgggcaat acattttgta aacctcgcgt gtcttgggtg
     1201 agaactgcct aaccgttgaa actccttacg acagtccagc cattctagtt cgacttctat
     1261 ctcaaacctc ccggacggaa ccaattcagg gtccggcttc gtcggtatcg atctagactg
     1321 taccgcttca atatagacct agacagtaac cgcgtcgaaa tagctctatc gtcgaaatag
     1381 ttttatagaa gtcactagag ttgaagtcgc aactc
//
LOCUS       DATCGC010001136         1023 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_249649, whole genome shotgun sequence.
ACCESSION   DATCGC010001136 DATCGC010000000
VERSION     DATCGC010001136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1023
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249649"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(349..>1023)
                     /locus_tag="VIJ87_10985"
     CDS             complement(349..>1023)
                     /locus_tag="VIJ87_10985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444972.1"
                     /translation="GLSEWNDKKQRRGSHEVEQRIQMIPVRQRDTRMVGCTGDSQVVI
                     SNPDLEDLIVSVLEAVDSPVDVRTLRSLVMSRLPVMDIYLVPLDGDDSDNENSNSYEP
                     VDKRENPEQGLLRRESEREAAGFVDQFLESLHEAVRGKVKQYNRILGVLWHCYLSSDH
                     STQLEVAASLGVSDSLVSDYRRRIEQELRALAFSEVEEAKQFEMALRSRVKELVFELG
                     EKEVVV"
BASE COUNT          268 a          293 c          219 g          243 t
ORIGIN      
        1 tgcgcgtctg gttcgacaga atgcgcatct acatcaactt ccatggctgg gatgagtttc
       61 tcagacattt gacgacggct cagataccgc gaaaggaagg aggggagact gactctgctg
      121 aagtatcaac ttcccaaaga caccagacac taatcgcgta agcggagacg actgctcgcc
      181 tccctgattc ctcagattca taatctagaa aatttctgtg gtaacgcaca cctatcgaga
      241 tcaagaccga aggctcatct taagtggtga ccatgaaaag agaaagagcc gctacgctat
      301 aggcatggca gctctaaagg gttcttaaat atggaatcgt gagtagcttt aaaccactac
      361 ctctttctct cccaactcaa aaaccaactc tttcactcta ctccgcaacg ccatctcaaa
      421 ctgtttcgct tcctcaactt cggaaaacgc caacgcgcga agttcctgct cgatccgccg
      481 ccggtagtct gacactaatg agtcagaaac tcctaatgag gccgcaactt ccaattgtgt
      541 cgaatgatcc gaactcaagt agcaatgcca caacactcca aggattcgat tgtattgttt
      601 gactttgcct ctaaccgctt cgtgcaaact ctccaaaaac tggtcaacaa aaccggccgc
      661 ttcacgctct gactcacgcc gtagtagccc ctgttccggg ttctcgcgtt tgtccacagg
      721 ctcgtaacta ttactgtttt cattgtcgct gtcatcaccg tccaggggca caaggtagat
      781 gtccatgaca ggcaaacgcg acatgacaag gcttcggagg gttctaacat caaccggtga
      841 atcaaccgct tccagaacgg acacaatcaa gtcttccagg tcaggattac tgatcacgac
      901 ctgcgaatct ccggtgcatc cgaccattcg cgtatcacgc tggcgaaccg gaatcatctg
      961 aatgcgctgc tcaacttcgt gagacccgcg ccgttgtttc ttatcgttcc actcactgag
     1021 acc
//
LOCUS       DATCGC010001137         1912 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_50939, whole genome shotgun sequence.
ACCESSION   DATCGC010001137 DATCGC010000000
VERSION     DATCGC010001137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1912)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1912)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1912
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50939"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(414..1088)
                     /locus_tag="VIJ87_10990"
     CDS             complement(414..1088)
                     /locus_tag="VIJ87_10990"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEY5444973.1"
                     /translation="MGVIDKTDAYRTLESELIAMNKLVILVFALLLSPMVARAQGGHE
                     YSPLVEKTVNYKNWALPNLKTDKPDDLRALVAGKKLVMIVYFAPWCGNWRNEAPIAAK
                     LYEKYKDQGFQVIGVSEYGSRDDVKAYFGEAGAPYPVVTESESRDDKQKTAHYGYRQL
                     TGDSRNWGSPWNIFLEPSKLTATGDVLTEKAWVVNGELVEDEVDKFIASKVSLKTASV
                     IEPCKN"
     gene            complement(1141..>1912)
                     /locus_tag="VIJ87_10995"
     CDS             complement(1141..>1912)
                     /locus_tag="VIJ87_10995"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HEY5444974.1"
                     /translation="TSGGWRSGLILSAFYSAGLAVPFLLTGLGINKFLGFYKNFRKHL
                     HKVEVFSGIVLILVGLLVMSGKSTVLASSALTRVVPSAETLVVKLQDWWYGGKAPVPL
                     ANPSIATTFPSAPDVEFQTLDGKPFRLKEFQGQVVVLNFWATYCLPCRDEIPDLNSLQ
                     HELDTRGLKIVGASLDDDADGINAYQKSVVKFDYKVLIGSSAIKQQYEQTVLPTTFLI
                     DRQGRIREKIIGARAKADWEAAIKPLLDEAPATASAGN"
BASE COUNT          483 a          491 c          476 g          462 t
ORIGIN      
        1 attttcatcc gaatcaaaca ggcctgtatc aaacagattg cccgggcgat gaagcaaacc
       61 ggcgtagtta acctcagcat cggggtgaat gcattctttg taaaagcgag taaaagttgc
      121 ggcggaggcc acgccgtcaa agcagtggcc atggtaaaga aggcgaagtt tcatatcggt
      181 tcccaaaaag agcgcgccat cttagcaacc gatgtgaaaa ggcgcaaagc gcgatgtccg
      241 attagcttca gcttgtcggg aaagatcagc cacagatgaa cacagataga cacagatcag
      301 gaaatagaag aagagaagac ctcaactgct gttttgtctg atctgcgcta atccgcgttc
      361 atctgtggct tgtttcttcg ataggacagc gacaagctga agcttatcgg acactagttc
      421 ttacaaggct caatcacact tgccgtcttc aaagagacct tcgacgcgat gaacttgtcc
      481 acttcgtctt caaccaattc gccattcaca acccaggcct tctcggtcaa tacgtcacca
      541 gtcgcggtca actttgatgg ctcaaggaaa atgttccatg gcgaacccca gttgcgacta
      601 tcgcccgtga gttgacgata gccgtagtgg gctgtctttt gtttgtcgtc cctggattct
      661 gattcggtaa caaccggata cggagcgcca gcttcaccga agtaagcttt gacgtcgtca
      721 cgcgaaccgt attcactcac gccgatgacc tggaatccct ggtccttgta cttctcataa
      781 agcttcgcgg ctataggagc ttcgttgcgc cagtttccac accacggtgc gaagtaaacg
      841 atcatgacga gcttcttgcc ggccaccagc gcgcgcaagt cgtcaggctt gtcagtcttt
      901 agatttggca acgcccagtt tttgtagtta accgttttct ctacaagtgg agaatactcg
      961 tggccgcctt gagcgcgtgc gaccattgga gaaagcagca aggcgaagac aaggattacg
     1021 agtttgttca tggcgattaa ctccgactcg agtgtccgat atgcgtctgt cttgtcgatg
     1081 actcccacaa ggacgtccga agctgtgtaa acgacaagct aaagcatatc ggacactatt
     1141 tcaatttcct gcactagccg ttgctggtgc ttcatcaaga aggggtttga tggctgcttc
     1201 ccaatctgct tttgcccggg cgccgattat cttttcgcga atccggcctt ggcgatcaat
     1261 caagaacgtc gttggcaaaa ccgtctgttc atattgctgt tttatggcgc tgctgccaat
     1321 caaaactttg tagtcaaact tgaccacgga tttctgatag gcgttgatac catcggcgtc
     1381 gtcgtccaac gaagcaccga caatcttcag accacgtgtg tcgagttcat gctgcaaaga
     1441 gttcaagtcg ggaatttcgt cgcgacacgg caggcagtac gttgcccaaa agttgagtac
     1501 gacaacctga ccttggaatt cttttaagcg aaatggcttt ccgtcgagag tttgaaattc
     1561 aacgtcaggc gctgatggaa aggtagtggc aatgctcggg ttggcaaggg gtacaggagc
     1621 cttgccgcca taccaccaat cttgcaattt caccactaat gtttccgcgc ttggcacgac
     1681 ccgagttagc gctgagctcg ctaacacggt cgacttccca ctcatcacca acaatccaac
     1741 cagaatcaaa acgatgccgg agaagacctc gactttgtgt aagtgtttgc ggaagttctt
     1801 gtagaagccg agaaacttgt tgattcccaa tccggttaag aggaagggaa ctgcgagacc
     1861 cgcggaatag aaagccgaca ggatcaaacc actgcgccaa ccgccgcttg tt
//
LOCUS       DATCGC010001138         1228 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_318344, whole genome shotgun sequence.
ACCESSION   DATCGC010001138 DATCGC010000000
VERSION     DATCGC010001138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1228)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1228)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1228
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_318344"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..218
                     /locus_tag="VIJ87_11000"
     CDS             <1..218
                     /locus_tag="VIJ87_11000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444975.1"
                     /translation="PGGNDTPQQVFGEALYEIYYRFLETEDEYFDYAPAPKPPQGRWR
                     IYGIGLPESILRKVYYENAARLLGLPH"
     gene            396..>1228
                     /locus_tag="VIJ87_11005"
     CDS             396..>1228
                     /locus_tag="VIJ87_11005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444976.1"
                     /translation="MGMAPALGRELVSFGLPLPPGFLFNSERVRLVDEAGLEITAATR
                     SLEPWRIGGREGSIRSLLIQFTLDFSRERTRRIRILFEPRQKGHTDLVAVEKTLTNSN
                     GLDGPRILAVLPANWLCDSLIVGLQTPSSESGQYRAYDEFVERNFPGSLAYLNSQVYS
                     EWLFDRTTVYYKMYVRTGDTKFLEAAYHSAHFVRLHTKMDGPDAGIFTLKGPDLKYVY
                     PRAMHIHYLLTGDERMLEVGKIMSAYCLKHQDPVYEPSAITPSPVGTDPERGRKFWTL
                     R"
BASE COUNT          306 a          297 c          313 g          312 t
ORIGIN      
        1 ttcccggtgg taacgacacc ccacagcagg tcttcggaga ggcactctat gaaatctatt
       61 atcgctttct tgaaacggaa gacgagtact tcgactacgc acctgctccg aaaccgccgc
      121 agggacgttg gcggatttac ggaataggat tacctgaatc aatcctacga aaggtctact
      181 acgaaaacgc agcccgctta ttgggattgc cgcattagaa gtctgaattt gtctgatccg
      241 aaagacagaa aacgttccgt tgcatgttcg gttcaaaact cacaagaaga tcatttttca
      301 aaagcagcct ggtctctctt tttgcggcca aggcagtctt gacgagtgac cctggggctt
      361 cagcaaaacg ttcctcggaa ctaaaggttg cgctcgtggg tatggcacca gctctcggtc
      421 gtgagttggt aagctttggc ttacctctgc ctcccggatt tctctttaat tcagagcggg
      481 ttcgactggt cgatgaagct ggactcgaaa taacagctgc gacacgatcg cttgagccct
      541 ggcgaattgg aggaagggaa ggcagcattc gctctctgct gatacagttc actctagatt
      601 tcagtaggga gcgaactcgc cggattcgaa ttctttttga gccacgacaa aagggacata
      661 cagatcttgt tgctgttgaa aagacactca caaacagtaa tggtttggat gggccaagaa
      721 ttcttgcggt gttgcctgct aattggttgt gcgactcctt gattgtgggt ctgcaaacgc
      781 catcgtcgga atcggggcaa tatcgagcct acgacgaatt tgtcgaaagg aattttcctg
      841 gctcgcttgc gtatctaaac agtcaggtct attcagaatg gttgtttgat cggacaaccg
      901 tttactacaa aatgtatgtt cgcactgggg atacgaagtt tctagaagca gcctatcact
      961 cagcgcattt cgtccgtcta catacgaaga tggacggtcc cgacgctggc atattcacat
     1021 tgaaaggccc ggaccttaaa tatgtctatc cgcgggcaat gcacattcac tatctgctta
     1081 ccggcgacga gcgcatgctg gaagtcggaa agatcatgtc tgcctattgt cttaaacatc
     1141 aagaccctgt ctatgagcca tcggccatca cgccgagccc ggtcggtacc gatccggagc
     1201 gcgggagaaa gttttggact ttaagaca
//
LOCUS       DATCGC010001139         1561 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_183454, whole genome shotgun sequence.
ACCESSION   DATCGC010001139 DATCGC010000000
VERSION     DATCGC010001139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1561)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1561)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1561
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183454"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..355
                     /locus_tag="VIJ87_11010"
     CDS             <1..355
                     /locus_tag="VIJ87_11010"
                     /inference="COORDINATES: protein motif:HMM:NF012797.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HEY5444977.1"
                     /translation="TSDPLSPKSLRGAMGSAFRLRMWSGADYSEVIDWCNSKGIATVC
                     AAATGDLSHTEVNWRAGCALILGPESTGLTLEEIAAAKMTVRIPMLGTVESLNVSVAA
                     GILLYEAARQRGFKD"
     gene            complement(345..1289)
                     /locus_tag="VIJ87_11015"
     CDS             complement(345..1289)
                     /locus_tag="VIJ87_11015"
                     /inference="COORDINATES: protein motif:HMM:NF012415.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CAP domain-containing protein"
                     /protein_id="HEY5444978.1"
                     /translation="MRIPIITRRQFLEASGVAAAWTMAPTTLRSAFALPQISHKFDDI
                     RSNLLHLINEEREVEKARPLELDDFATSVATAHAEEMAKNEFVSHWGRNGMKPYQRYS
                     FAGGYHATQENISAADNTWSMKPEALKQDTSYLHVRLYQETPPNDGHRRAILAPHHTH
                     VGVGIAVEQLRLRVVELFISKYVEFKPVPRIGRPKDVIPLSGSLLTSNYLLNTIEVFY
                     EPLPKTPELEWLREPRSYALPDESQVLRPIIPPPYEYADKRPGVIQVKSTGEFDAPVT
                     LFKDSPGIYTVVCWLRRNRGEKAFPATELCIRVEDVNP"
     gene            complement(1324..>1561)
                     /locus_tag="VIJ87_11020"
     CDS             complement(1324..>1561)
                     /locus_tag="VIJ87_11020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444979.1"
                     /translation="MLFKAFQIFLVTFLVVFTAAGAVLLLYGVLSIIPLNRSGGIAFV
                     ASGFSLSTVRMIIVIALLLIVAGVSLIARRRRLR"
BASE COUNT          359 a          385 c          440 g          377 t
ORIGIN      
        1 tacgtctgat ccactttccc caaaatctct gcgtggggca atgggatcag ccttccgtct
       61 acggatgtgg agcggtgctg actacagtga agttatcgat tggtgtaact cgaaaggtat
      121 tgcgacggtt tgcgccgcgg cgactggaga cttgtcacac accgaggtca attggagggc
      181 tggttgcgcg ttgatcctgg gtcctgaatc tacgggacta actttggagg aaattgcagc
      241 tgcgaaaatg actgtaagaa ttccgatgtt gggaacggtt gagagtttga acgtatccgt
      301 tgcggccggg attcttctct atgaggctgc gcggcaacgt ggtttcaagg attgacgtct
      361 tcaactcgaa tgcagagttc ggttgccgga aatgctttct ctcctcgatt tcttctcaac
      421 cagcagacca cggtgtagat tccaggtgaa tccttgaata gagtcactgg cgcgtcaaac
      481 tcacccgtcg acttcacctg gataacgccc ggtcttttat cggcatactc ataaggtggg
      541 ggaatgattg gccgaagaac ctgagactcg tcaggtagcg catacgacct cggctcgcgc
      601 aaccattcca actcaggagt tttaggcaaa ggttcgtaga acacttcgat ggtgttgagc
      661 aggtagttcg atgtcaatag gctgccgctc aatggaatca cgtctttggg ccgcccgatc
      721 cgtgggactg gtttgaactc aacgtacttc gaaatgaata gctcaacaac acgcagacgc
      781 agttgttcaa cggcgatgcc gacacctacg tgggtatgat ggggggccag gatcgctctt
      841 cgatggccgt cattcggtgg ggtttcctgg tagagtcgaa cgtgaaggta tgaggtgtct
      901 tgctttaagg cctccggttt catcgaccat gtgttgtcgg ccgccgaaat gttttcctgg
      961 gtcgcgtgat aaccgcccgc aaatgagtaa cgctggtaag gcttcattcc gttcctgccc
     1021 cagtggctta cgaattcgtt tttagccatt tcttcagcat gggccgtagc tacgctggtc
     1081 gcgaagtcgt ccagttctaa tggtcgggcc ttttcaactt cacgttcttc gttgatcaaa
     1141 tggagaagat ttgatctgat gtcgtcgaac ttatggctga tctgagggag tgcgaaggcg
     1201 gagcgcaacg tcgtgggagc cattgtccaa gcggccgcga caccgctcgc ttcgaggaac
     1261 tgacgtcggg tgataatcgg gatacgcatc ggattggaca cgactacaag ccgtcttcga
     1321 tccctatcgc aacctgcggc ggcgggctat caaagagaca ccggcgacga tcagtagtaa
     1381 ggcgatcacg ataatcatcc ggaccgtgct caaactgaaa ccactcgcca caaatgcgat
     1441 cccgcctgaa cgattgagag gaatgatcga taacacgccg tacaataaca acacggcgcc
     1501 tgcggctgtg aagaccacga ggaacgttac cagaaagatt tgaaacgcct taaatagcat
     1561 g
//
LOCUS       DATCGC010001140         2369 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_20434, whole genome shotgun sequence.
ACCESSION   DATCGC010001140 DATCGC010000000
VERSION     DATCGC010001140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2369)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2369)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2369
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20434"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            104..361
                     /locus_tag="VIJ87_11025"
     CDS             104..361
                     /locus_tag="VIJ87_11025"
                     /inference="COORDINATES: protein motif:HMM:NF024881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HEY5444980.1"
                     /translation="MSCQNERGLIQSYVDGELDELHASKMKQHLDRCEECRSAHVIEL
                     MLRSSLRDTSLYQRAPEDLEKRIRLSLQRETRGEKPSDDED"
     gene            complement(402..959)
                     /locus_tag="VIJ87_11030"
     CDS             complement(402..959)
                     /locus_tag="VIJ87_11030"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY5444981.1"
                     /translation="MSAILQDFEEVAIPHLDAAYNLARWFTRNEKDAEDVVQEAYLRA
                     LRHFSGFHGGDARPWLLAIVRNTYYTWFRQNRVSEREANFEDEIYMQTSDDLDPEMLL
                     IREADNEMLRRALKSLPDEFREVIVLREFEELSYKQIADVVKIPVGTVMSRLARARSR
                     LKQIISNDLNRGHASVSSSNLQCGL"
     gene            complement(1013..1291)
                     /locus_tag="VIJ87_11035"
     CDS             complement(1013..1291)
                     /locus_tag="VIJ87_11035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444982.1"
                     /translation="MLKITIAVLSTQGITLQLDGRLAGRWVELLRDTATSVLDEGLGV
                     NVDLRNVCFIDCEGIALLKSLIDRGARHVNAPLFVAEQIRKCTDVQDQ"
     gene            complement(1476..>2369)
                     /locus_tag="VIJ87_11040"
     CDS             complement(1476..>2369)
                     /locus_tag="VIJ87_11040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444983.1"
                     /translation="PNTAWWWAAGLGFAIIFTVLAAQTKGQEPSGLSSSPVSAASDVG
                     ENTTRDFVAPTVFQAAGPDAASIQSSVTAFRNALGDPVNGNATMPLDKGRREINWDGA
                     TPTDVTTPPVTPFNTFLNTRGAQFTTPGIGLSQAPPSGGPQGGLVGLFNNPSYGTAFG
                     VFSPLRLFTPVGSNVTNTFFFLPGSNGNVPAVVSGFGAVFTDVDQPDGSGPGKKQGNR
                     GASTLMEFFGADGSLLFSSVVPASPGNAGLSFFAIKFNDARIASVRITAGNVAPGPDD
                     DDKHDVVMMDDFIYGEPHVLP"
BASE COUNT          610 a          631 c          552 g          576 t
ORIGIN      
        1 atggcaaaga aacgatcctg caagcgtgat cgtcgccact acgttcgagg taacaaaaga
       61 tcacagctag ctattaacaa atcagtctac gcggaggtgt aagttgagtt gccagaacga
      121 gcgaggactc attcagagct atgttgatgg tgaactggat gaacttcacg cctcaaaaat
      181 gaaacaacac cttgatcgat gcgaagaatg tcgctcggca cacgtcattg aactcatgtt
      241 gcgttcatcc ttgagagata catcgctcta tcaacgcgct ccagaagatc ttgagaaacg
      301 aattcgcttg tcgcttcaaa gggagactcg aggtgagaag ccttcagacg atgaagacta
      361 atcataatca ctcgatcgat tgaacaactt cgcaccgctt gttacaaacc gcactgaaga
      421 ttagaagagc taacactcgc atgtcctcta tttagatcat tcgaaataat ttgtttaaga
      481 cgacttcgag cgcgagcgag acgcgacatc accgtaccca ctggtatctt tactacgtct
      541 gcaatttgtt tgtacgacaa ttcttcaaat tctctcagca cgattacttc acgaaactca
      601 tcgggtaagc ttttcaatgc tcgtctgagc atctcgttgt ccgcttctct gattagcagc
      661 atctcaggat ccaaatcgtc tgaagtctgc atgtatattt cgtcttcgaa gttggcttcc
      721 ctttcagaca ctcgattctg ccggaaccag gtgtaataag tattgcgcac aatagccaac
      781 aaccagggac gagcgtcacc accatgaaac ccgctgaagt gacgtaaagc gcgtaagtac
      841 gcttcctgca ccacatcttc agcatctttc tcgtttctgg taaaccaacg agcaagattg
      901 tatgccgcgt cgaggtgggg tattgcgacc tcctcaaaat cttgaaggat ggctgacatt
      961 tcagttctcc tttcttgttt catgagcctg acgcatgtcg ctcttagtga aattattggt
     1021 cttgtacatc cgtgcacttc ctgatctgct cagctacgaa cagcggagca tttacatgac
     1081 gagccccacg gtcaatcaaa ctttttagga gcgcgatccc ctcgcagtcg atgaaacaga
     1141 catttctcaa atccacgttc acacccaggc cttcgtcgag cactgaagta gcagtgtctc
     1201 gtagtaactc gacccacctg cctgcaagcc gtccatccaa ctgcaacgta attccctgtg
     1261 ttgataaaac agcaattgtg atcttcagca ttcccttgta ctctcgtcga aacttcttgc
     1321 gagtccttct aatttctgaa tgcgtttacg acgcaaaatg aagcgttaca agcaagacca
     1381 gcgtgtctcc gtgcgaaaca tgtcgttgac tgcgcaggtc ttgctctaac gttctttacg
     1441 cgacgttcag cgcgtgatat ttcaatacgg ttcccttacg gaagcacatg cggttcaccg
     1501 tagataaagt cgtccatcat cactacgtca tgcttgtcgt catcatcagg ccctggagcg
     1561 acattccctg ccgtgatcct cacactggcg atacgagcgt cgttaaactt aatagcgaaa
     1621 aaagacagtc cggcgtttcc gggtgaagca ggaacaacac tgctgaataa caggctgccg
     1681 tcagcaccga aaaattccat cagcgtgctc gctccgcggt tgccctgttt tttgccggga
     1741 ccgctaccat ccggctggtc cacgtccgtg aataccgcac cgaagccact gactaccgca
     1801 ggaacatttc cattcgagcc aggtaaaaag aaaaacgtgt tagtgacatt gcttccaacc
     1861 ggagtgaaca aacgcaaggg actgaaaaca ccgaaagcag tgccgtaact cgggttgttg
     1921 aaaagtccta cgagacctcc ttgtggccca ccagatggag gagcctggga gagtccgatc
     1981 cccggcgttg tgaactgagc gcctcgggta ttcagaaacg tgttgaatgg agtgactggc
     2041 ggggtagtaa cgtcagtggg agtcgctcca tcccaattaa tctcacgacg acccttgtcc
     2101 aagggcatcg ttgcgttgcc gtttaccgga tctcccaacg cattgcgaaa agcagtaacc
     2161 gaactctgga tcgacgcggc gtctgggccg gcagcctgaa acacggtcgg tgctacaaaa
     2221 tccctggtgg tgttttcacc aacgtcactg gcagctgaga ctgggctgct gctcaagccg
     2281 gagggttcct ggcccttagt ttgagccgcc aagactgtaa aaatgattgc gaaacctaaa
     2341 cctgctgccc accaccaagc agtattggg
//
LOCUS       DATCGC010001141         1206 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_483243, whole genome shotgun sequence.
ACCESSION   DATCGC010001141 DATCGC010000000
VERSION     DATCGC010001141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1206)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1206)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1206
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_483243"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1085)
                     /locus_tag="VIJ87_11045"
     CDS             complement(<1..1085)
                     /locus_tag="VIJ87_11045"
                     /inference="COORDINATES: protein motif:HMM:NF042863.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="terminase TerL endonuclease subunit"
                     /protein_id="HEY5444984.1"
                     /translation="MKQAEEIIGPIRTSITRARGPYFKFLTEGSLQNTTGSRALRQKL
                     VPTKKGVENFLTGSLLEVRPMSIDKLQGLRSKYNTVDEWLSGDIREDVVEAIRQGAEK
                     VDDWLIVAVSSEGTVRNGAGDNIKLTLQEILKGDYIAPEISIWHYKLDELEEIKNPDM
                     WVKAQPNLAKTVSYSTYHKAVERAEKSPSQRNDILAKRFGIPMAGFTYFFTYEETLPH
                     RKRKFWGLPCSLGADLSQGDDFCAFTFLFPLPNGKFGVKVRSYITERTMGRLPGSTRS
                     KYDEFIDEGSLHVMPGTILDVDGQIFDDLDAHIQTCDYDVRTFGYDLYGAHAFVEKWK
                     QMNGPYGMERVIQGARTESVPLGELKNL"
BASE COUNT          302 a          306 c          291 g          307 t
ORIGIN      
        1 aggttcttga gttcgccgag tgggaccgac tcggttcttg ccccctgaat gactcgttcc
       61 ataccgtaag gaccattcat ctgcttccac ttttcaacga aagcatgagc accgtaaagg
      121 tcatagccaa aggtacgtac atcgtagtca caggtctgaa tgtgtgcatc gagatcatcg
      181 aagatctgac catcgacatc caagatagtt ccaggcatga catgaaggct gccttcatca
      241 atgaactcgt catacttgga ccgagtagat ccaggaagtc gacccatggt tcgttctgtg
      301 atgtagctac gaacctttac tccaaatttt ccgtttggga ggggaaacaa aaaggtgaat
      361 gcgcagaagt catcaccctg cgacaggtcg gcacccaaag aacaagggag tccccagaac
      421 ttacgcttac gatggggcag agtttcttcg tatgtgaaga agtatgtgaa tcctgccatc
      481 ggaatgccaa agcgctttgc caggatgtca ttacgttgtg agggcgactt ttctgcacgc
      541 tctaccgcct tgtggtaggt agaatatgac acggtcttag caagattcgg ctgtgccttg
      601 acccacatgt ccggattctt gatctcttca agctcatcca acttgtaatg ccagatagaa
      661 atctcaggag caatatagtc acccttgaga atctcctgaa gagtcagctt gatgttgtca
      721 ccagcaccgt ttcgaactgt tccttctgaa ctgactgcta caatgagcca atcatcgacc
      781 ttttccgctc cctgtcgaat agcctcaaca acatcctcac gaatatcgcc tgacagccac
      841 tcatccaccg tgttgtactt ggaccgaagt ccttgaagct tgtcaatcga catgggtcgt
      901 acttcaagca aggagccggt cagaaagttc tcgactccct tcttagtggg aaccaacttc
      961 tgtctgagag ctcgtgaccc cgtagtgttt tgaagtgaac cctccgtcag aaacttgaag
     1021 tacggccctc gcgcacgggt gatggaagtg cgaataggac cgatgatctc ttcggcttgt
     1081 ttcatcgttg gagcggtagt gatctgatgg gtagtatgtc gatcgcagtt cagaccatag
     1141 ttctgaatgc acgactcata gagcgattta gccgcaccac gagccacgat cagatactgg
     1201 atgttg
//
LOCUS       DATCGC010001142         1128 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_450381, whole genome shotgun sequence.
ACCESSION   DATCGC010001142 DATCGC010000000
VERSION     DATCGC010001142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1128)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1128
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_450381"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            99..>1128
                     /locus_tag="VIJ87_11050"
     CDS             99..>1128
                     /locus_tag="VIJ87_11050"
                     /inference="COORDINATES: protein motif:HMM:NF014896.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444985.1"
                     /translation="MTFSKPTLSKAHRVNCHYQLAGRSISDPYRWMEDDSTELRTWVH
                     AQHNYTMAQLSSLPVRENIRRRLEELMRAPSIGPITKAGTRYFFRQRLNDQEISALYC
                     KDAANGAPRLLIDPNEVSSDHTISLADTHPSCDGSLLAYRLSVSGSSRMSLHVMNVNT
                     KEMLPDLIPGDVNPVAHAWHTKNRVAWVRDNSGFYYTRCPNATLAAEARFNHKLYFHQ
                     LGDNWRDDEMVFGESLKRKQTPYPLLSSDGRYLMVVVQDVSGTTPSSQVYLLDREDQR
                     RGFVPIIHEGDAFVSATLHRDTIYIRTNDQAPLGKLISIKFAEITEQEFAFTTVIPEQ
                     SSPLGKWKT"
BASE COUNT          275 a          300 c          291 g          262 t
ORIGIN      
        1 gggatcgtta tgttcatgaa ggcacggtag aagagggtcg ctgggcgatg actgtatggc
       61 gacgtgtcag ttgagttcaa gtgctctgcc agtgaatcat gactttctct aaaccaacac
      121 tctccaaggc acacagggtc aactgtcact accaactggc cggacgctcg attagtgacc
      181 cttatcgttg gatggaagat gactctacag agttgcgaac atgggtacac gcgcaacaca
      241 actacacgat ggcccaactc tcgtctcttc cggttcggga aaacatccgg cggcgtttgg
      301 aagagttgat gcgtgcgcct tccatcgggc ccatcactaa agcgggaaca cgatacttct
      361 ttcgccagcg tttaaacgat caagaaatct cggcgctcta ttgtaaggac gcagcgaacg
      421 gcgcaccgag gttgttgatt gatccaaatg aggtgagttc cgaccatacg atctcgctcg
      481 cagatactca tccaagttgc gacggctcgc tcctcgccta tcgcctgtct gtatccggaa
      541 gctcacgcat gtcgctccac gtaatgaacg tcaacaccaa agaaatgctg ccagatctta
      601 ttcccgggga cgtaaatcca gttgcgcatg catggcacac taagaaccga gttgcctggg
      661 tccgtgacaa cagcggcttt tactacacgc gttgccccaa cgcgacgctt gccgcagagg
      721 cgcgattcaa tcacaagctc tactttcatc aacttggtga taattggcgc gacgatgaga
      781 tggtgtttgg cgaatcgctg aagcgaaagc aaacgcctta cccactgtta tcgtccgatg
      841 gtcgctacct aatggtcgtt gtgcaggatg tatcgggcac aacgccgtct tcgcaagtgt
      901 atcttctcga tcgggaggat cagcgacgcg gcttcgttcc aatcattcat gagggcgatg
      961 cgtttgtgag tgccacgtta catcgagaca ctatctatat aaggactaac gaccaggctc
     1021 cgttgggcaa actcatctcg atcaagttcg ctgaaataac tgagcaggag tttgctttca
     1081 caactgtaat ccccgagcaa tcgtctccgc tcggaaagtg gaagacag
//
LOCUS       DATCGC010001143         2320 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_215027, whole genome shotgun sequence.
ACCESSION   DATCGC010001143 DATCGC010000000
VERSION     DATCGC010001143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2320
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_215027"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..618
                     /locus_tag="VIJ87_11055"
     CDS             <1..618
                     /locus_tag="VIJ87_11055"
                     /inference="COORDINATES: protein motif:HMM:NF044379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HEY5444986.1"
                     /translation="EAVVVDCPDEFIGVITEALGRRKGQMTKMVNHGTGRVRLEFETP
                     SRGLIGFRNEFLTETKGTGLLNTMFLRWGEWQGAMRSRANGSLVADRVGETTTYALYN
                     LQERGTLFVKPGTKVYEGMVIGENARAVDLDVNAIKEKKLTNMRAASADEAMRLVPQK
                     DLSLEQALEFISDDELVEVTPQTIRLRKRVLAANLRPKKKESAEG"
     gene            621..1253
                     /gene="thiE"
                     /locus_tag="VIJ87_11060"
     CDS             621..1253
                     /gene="thiE"
                     /locus_tag="VIJ87_11060"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004789 - thiamine-phosphate
                     diphosphorylase activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEY5444987.1"
                     /translation="MKSFRLPRIYPLTDVQVSGLSHAEQIRRLCAGGASLVQFREKSL
                     PASDFYDEAQAALRVTRELRIRLIINDRVDVALALGADGVHLGQDDLAPTAARELLGE
                     NAIIGLSTHNMSQALEAQKAPIDYLAFGPIFSTTTKQDTSPVVGLAGLAEVRLITKGL
                     PLVAIGGITEANAAEVIQTGADSVAVVSSLLSSPQDISQRTNNFIELLGK"
     gene            1389..>2320
                     /locus_tag="VIJ87_11065"
     CDS             1389..>2320
                     /locus_tag="VIJ87_11065"
                     /inference="COORDINATES: protein motif:HMM:TIGR01420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilT/PilU family type 4a pilus ATPase"
                     /protein_id="HEY5444988.1"
                     /translation="MSFFDLPPIIERMLLVSDKISDLNFSVGQLPQVEINGKLTPVQP
                     LGMQKLSPYQTEIIALTLIHGNPDAAERLARTGTADLSFSLPSRARFRVNIFQQRGVY
                     SIVMRVIPTDIPSIRSLGLPSHLNEISELRNGLVLVTGPTGSGKSSTQAAIIDIINEK
                     KHYHVVTIEDPIEYLHSHKNSTINQREVGNDTRDFPSALRAALRQAPKVILIGEMRDF
                     ETTEIALEAAETGHLVLSTLHTIDAAKTVDRIIGLYPKNEEQVIRTRLAQTFRYIVSQ
                     RLIPRADGRGRVAAVEILRSSPRTREYIEAGEVEG"
BASE COUNT          577 a          620 c          591 g          532 t
ORIGIN      
        1 gaggcggtgg tggttgattg cccagacgag ttcatcggcg taattaccga agcgcttggt
       61 cgtcgtaaag gacagatgac caaaatggtt aaccatggca caggacgcgt acgactcgaa
      121 tttgagaccc cctctcgtgg cttgatcgga ttccgcaacg agtttttgac tgagaccaag
      181 ggcaccggtc tactgaacac gatgttcctt cgctggggcg aatggcaagg agcgatgcgc
      241 agtcgtgcaa acggttcgtt agtcgccgat cgagttggcg aaactactac ctacgccttg
      301 tacaatttgc aggagcgagg aacgcttttc gtgaagcctg gaaccaaggt ttacgaaggt
      361 atggtgattg gcgagaacgc gcgtgctgtc gatcttgacg tgaacgcaat taaggaaaag
      421 aagctgacga acatgcgagc tgcgtcagcc gatgaagcaa tgcgtcttgt tcctcagaag
      481 gacctctccc ttgaacaggc ccttgaattc attagcgacg acgaactcgt ggaagtgacg
      541 ccacaaacca tccgtttgcg taagcgagta ttggctgcca acctgcggcc aaagaaaaaa
      601 gaatctgctg agggttgaag gtgaagtctt tccgccttcc cagaatctat ccactgacag
      661 atgtccaggt aagtgggtta tcccatgctg aacagataag gcgactttgc gctggtggtg
      721 cttcactcgt ccagttccgg gaaaagagct tacccgcaag cgacttttac gacgaggcac
      781 aggcagcctt acgggttaca cgtgagctga ggattcggtt gatcattaac gaccgagtcg
      841 acgttgcgct tgccctgggc gctgacggtg ttcatcttgg tcaagacgat ttggcaccca
      901 ccgcggcccg agaactgtta ggtgagaatg caatcattgg cttatccacc cacaacatgt
      961 cccaagctct tgaggcacag aaagccccaa tagactatct cgcattcgga cccattttct
     1021 ccacgacgac aaagcaggac acttcaccag ttgtgggttt ggcgggtttg gcggaagttc
     1081 gtctaattac taagggactc cccctagttg caattggcgg aattaccgaa gccaatgcgg
     1141 cggaagtgat tcaaactggc gccgattccg tagccgtcgt gagttcgctg ctctcaagcc
     1201 ctcaggacat cagtcaacga actaacaatt ttattgagct gctcggcaaa taggccaaca
     1261 tattttactt gcgttaatca cggttatgcg caagaatcag aaccgaccgg ggaggaattc
     1321 gccccgggcc aaacccgcct tccaggatta gcccttctag acaatcgttc ccggagttcc
     1381 gaaactagat gagtttcttc gatctgcctc caatcattga gcgaatgttg ctggtctctg
     1441 acaagatcag cgacctgaat ttttcggttg gccaactgcc tcaagtcgaa atcaacggaa
     1501 agctcacccc cgttcaaccg cttggaatgc agaagctctc tccgtaccaa actgaaataa
     1561 ttgcactcac cctgattcat ggaaacccgg atgccgcgga acgattggcc agaaccggca
     1621 cggccgacct gagcttttcc ttgccttcgc gcgctcgatt ccgcgtcaat atcttccagc
     1681 aacgcggcgt ctactcgatc gtgatgcgcg ttattcccac cgacataccg tcaattagat
     1741 cacttggact gccttctcat ctaaacgaga tctcagagct tagaaatggt ctcgttcttg
     1801 tgaccggccc gaccggttcg ggtaaaagct caactcaagc ggcaatcatc gacatcatca
     1861 acgagaagaa gcattaccac gtagtcacaa tcgaagaccc aattgagtac ctccattccc
     1921 ataagaattc gaccatcaat caacgcgagg tcggcaacga tacgagggat tttccgtccg
     1981 ctctacgtgc agcgctaaga caagcgccta aagttattct gattggtgag atgcgtgact
     2041 ttgagactac cgagattgcg cttgaggctg cagagactgg tcacctcgtg ctctcaacct
     2101 tgcacaccat cgatgctgca aaaaccgttg accgcatcat tggtctctat cccaagaatg
     2161 aagagcaggt gattcgtaca cgccttgcac aaacatttcg ttacatagtt tcccagcgtc
     2221 tcatcccacg cgccgacggc cgtggtcgtg ttgccgcagt tgagatcctt aggtctagtc
     2281 cgagaacacg cgaatacatc gaagctggtg aagtcgaggg
//
LOCUS       DATCGC010001144         1910 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_183498, whole genome shotgun sequence.
ACCESSION   DATCGC010001144 DATCGC010000000
VERSION     DATCGC010001144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1910)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1910)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1910
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183498"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(111..1400)
                     /locus_tag="VIJ87_11070"
     CDS             complement(111..1400)
                     /locus_tag="VIJ87_11070"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HEY5444989.1"
                     /translation="MPQIQFNDRVLANGLRVISAPDHSSPTVAIQVWYHVGSKDDPEK
                     RSGFAHLFEHMMFKSTRNMKSEMMDRLTEDVGGNNNAFTTDDVTVYFEVIPSNYLETL
                     IWAEADRLSGLNVNDENFKSERDVVKEEFRERVLTPPYGRFQFLLQEKSYSKHPYKRP
                     TIGLIEDLDSASLENVQKFYSTYYRPDNVTLIVAGDFEPGQLDAWVDKYLGVIARPQQ
                     SIPRVTTKEPERTGEIRLVEYGKIDLPAVGITYLIPPESDPDSDPLDIAQALLGVGAS
                     SRLYHSMVYEQQLAAEVVADADSREDASLFVLTAVLSEGKKPAEAERSMLAEIKKLQD
                     APVSARELDKAKNQFITSILRERETNEGRAQALGEAAVLLGDPKLTNTDLDRLQAVSA
                     ADVQRVMKKYFKESNRLVLYYLPEAWKTNRSSTRVNR"
     gene            complement(1564..1860)
                     /locus_tag="VIJ87_11075"
     CDS             complement(1564..1860)
                     /locus_tag="VIJ87_11075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444990.1"
                     /translation="MADTSKFTIICPCCDATLTVDTQTGALLAHEEKAKPIASFDEMV
                     KGLDKQKQVREQIFAQELNSMKDRDRILEEKFQEAMKRAEKDKDKPYRNPLDLD"
BASE COUNT          449 a          495 c          466 g          500 t
ORIGIN      
        1 tactgagcga ggtgcggaag gtaacggagg agtcgactgt gtttgacaca cacacaccca
       61 cgcgaagacg agcatgctaa ggtaggcgcc caaagtttta gatctaagcc tcaacgattc
      121 accctcgtcg acgagcggtt cgttttccat gcttcgggca gataatagag caccagtcga
      181 ttcgactctt tgaaatactt cttcatcacc cgctgcacgt ccgcagcgga tacggcttgc
      241 agtcggtcca gatcagtatt tgtaagtttt ggatctccga gtagtacagc ggcctcaccg
      301 agagcctgag ctcgtccctc attcgtttca cgttctcgaa gaatgctggt gatgaattgg
      361 ttctttgcct tatcgagttc cctcgcgctc accggcgcgt cctgaagctt ctttatctcg
      421 gcaagcatcg agcgctcagc ctctgctggc ttcttgccct ccgacaaaac ggcggtaagc
      481 acaaacaagc tcgcatcttc ccgcgaatca gcatctgcca ccacttcggc agccagttgc
      541 tgctcataaa ccattgagtg atacagacgc gacgaagcgc ccacgccaag tagagcctgg
      601 gcaatatcca gcggatcgct atctggatcc gactcaggcg gaattagata agtaatgccg
      661 acggcaggaa gatcaatctt cccgtattcg accaaacgaa tttcgcctgt gcgttccggc
      721 tctttcgtcg tgacacgggg tatagactgt tgcggtctgg caatgacacc caggtattta
      781 tcaacccaag cgtcgagctg gccgggctca aaatcgcccg cgactatcag cgttacattg
      841 tctggccgat agtacgttga gtagaacttc tggacattct ctagtgatgc cgaatcgagg
      901 tcttcaatca agcctatcgt tggtcgcttg taagggtgtt tgctgtacga cttttcctga
      961 agcaagaact ggaatcggcc atagggcggt gtaagtaccc tttcccgaaa ctcttccttt
     1021 acaacatcgc gctcagattt aaagttttca tcgtttacgt tcaagcctga tagtcgatca
     1081 gcttcggccc agatcaaggt ctccaggtaa tttgagggga tgacttcgaa atagacagtc
     1141 acgtcatcgg tggtgaatgc attgttgttt ccgccgacgt cctccgtcag acgatccatc
     1201 atctccgact tcatgtttcg cgtactcttg aacatcatgt gctcgaagag atgagcgaaa
     1261 ccgctccgct tctccgggtc gtctttggaa ccaacgtgat accaaacctg gattgcaacg
     1321 gttggacttg aatggtctgg agcgctgatg acccgcaggc cgtttgccag gacccgatcg
     1381 ttaaattgga tctgaggcat tcgaacttgc gtgaagtttc tagtcggaaa cgcagcgaca
     1441 attaccaata tggcaagaag cttaattgaa gttccaagac gagtcagatt cttgtttcgg
     1501 gaaggcttat gcaacatcga gggaacgaaa agaactacct aaaaagagac ttcccaaaat
     1561 cattcaatcg agatccagtg ggttacggta aggcttgtct ttgtcttttt cggcgcgttt
     1621 catcgcctcc tgaaacttct cttccagaat gcgatcacga tccttcatgg aattgagttc
     1681 ctgggcaaaa atctgctctc gcacttgctt ctgtttgtct aagcctttga ccatttcatc
     1741 aaacgaggcg attggctttg ctttttcttc gtgagcgagc aatgcaccgg tctgcgtatc
     1801 gacggtaagt gtcgcgtcac aacatgggca aatgattgtg aacttggatg tatcagccat
     1861 tgaattgcct tctttctgaa ccgctgcaac aggtcttcaa gtatagcatc
//
LOCUS       DATCGC010001145         2025 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_348986, whole genome shotgun sequence.
ACCESSION   DATCGC010001145 DATCGC010000000
VERSION     DATCGC010001145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2025
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_348986"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1240)
                     /locus_tag="VIJ87_11080"
     rRNA            complement(<1..1240)
                     /locus_tag="VIJ87_11080"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            complement(1395..1470)
                     /locus_tag="VIJ87_11085"
     tRNA            complement(1395..1470)
                     /locus_tag="VIJ87_11085"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1435..1437),aa:Ala,seq:tgc)
     gene            complement(1644..1720)
                     /locus_tag="VIJ87_11090"
     tRNA            complement(1644..1720)
                     /locus_tag="VIJ87_11090"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1684..1686),aa:Ile,seq:gat)
     gene            complement(1901..>2025)
                     /locus_tag="VIJ87_11095"
     rRNA            complement(1901..>2025)
                     /locus_tag="VIJ87_11095"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          440 a          607 c          430 g          548 t
ORIGIN      
        1 ttcggtactg tgcttagccc cgttacatct tcggcgcaga ctcactcgac cagtgagctg
       61 ttacgctttc tttaaaggat ggctgcttct aagccaacct cctggttgtc tgtgcgtttc
      121 cacatccttt accactgagc acaaatttcg ggaccttagc tggcgatctg ggctctttcc
      181 ctttcgacca cggaacttat ctcccgcagt ctgactcccg tgattgggca agacggaatt
      241 cgcagtttgg ttaggtttag tatcccggta aggaccttag cccgtccagt gctctacctc
      301 cgtctgccaa acacgaggct atacctcaat atatttcggg gagaaccagc tatcacggaa
      361 tttgattagc ctttcactcc tatccacagc tcatccgaga agttttcaac cttcaccagt
      421 tcggacctcc atttcgtgtt accgaaattt catcctggcc atggatagat catcccgctt
      481 cgggtctact ccacgcaact gaatcgccct attcagactc gctttcgcta cggcttcacc
      541 tcgaacggct taaccttgct acgtagagta actcgcagac tcattatgca aaaggcacgc
      601 ggtcaggcat atccttcgcc gaagctctga acatagccct cccactgctt gtaggcacac
      661 ggtttcaggt actatttcac tcccctcact ggggttcttt tcacctttcc ctcgcggtac
      721 tagttcacta tcggtcgcga tttagtattt agccttggga gatggtcctc cctgcttccc
      781 gcgggatttc tcgtgccccg cggtactcgg gaactgcttc cagaaagatc agatcattta
      841 tcctacggga ctatcaccct ctttggttgt cctttccaag agccttcaga tatgaactga
      901 ttttgtaact tcccgggcta caccctaaag cagccccaca accccgatgg aatttcttcc
      961 agcggtttgg gctcttcccc gttcgctcgc cactacttag ggaatctcta tttgatttct
     1021 cttcctgggg gtactgagat gtttcacttc cccccgttcg cctctcacac ctatggattc
     1081 agtgtgagat gatcccgaat taccaggacc aggttgcccc attcggaaat ctccggatca
     1141 aagcctgctt agcggctccc cgaagcttat cgcagctagc cacgcccttc atcgccttct
     1201 cgcgcctagg cattcaccgt atgcccttag tagcttgacc atattcgcca atactactca
     1261 gcattaattg cagtttgtta cccgtattca gttgtcaaag aacagcacgt cgacgaatcg
     1321 acgaccagtc atgaatgact agtaagaaat gatgaatctc atcacttgtt actggtcact
     1381 ctgtcatccg aagttggtgg agctgatcgg gatcgaaccg acgacctccg gcttgcaaaa
     1441 ccggcgctct cccaactgag ctacagcccc gacaatgttt gtcgccggat catcgcccag
     1501 cttatttctg attgatttga acgatcaacc ttaacctctt gccaccatca gacttgatcg
     1561 ttcgctgaat tgggatggaa gaagaggtta actaaattct tgccccagat ttacctcgct
     1621 ttttcctacc tggcctccat aactggtggg cctaggtaga gtcgaactac cgacctcacc
     1681 cttatcaggg gtgcgctcta accaactgag ctataggccc ggccgcatgc ctttctcgtc
     1741 gtccaaaata cgcctcaaag ggccaaaacc ttcggtcttt caaaactaaa tagtagcacg
     1801 gtctagggcc cgagtgtctc gctatccaga caacaaacct cacaattgct tgcgaggact
     1861 gacctaggat acttcttttt tcaagaagga agctccttag aaaggaggtg atccagccgc
     1921 aggttcccct acggctacct tgttacgact tcaccccagt caccagtcat accataggcg
     1981 gctacctccc ttgcgggttg gtgcaccgac ttccggtaca gctgg
//
LOCUS       DATCGC010001146         1877 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_183524, whole genome shotgun sequence.
ACCESSION   DATCGC010001146 DATCGC010000000
VERSION     DATCGC010001146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1877)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1877)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1877
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183524"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..889)
                     /locus_tag="VIJ87_11100"
     CDS             complement(<1..889)
                     /locus_tag="VIJ87_11100"
                     /inference="COORDINATES: protein motif:HMM:NF012690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HEY5444991.1"
                     /translation="MITSEILEGLTFDDVLLIPDRSDVLPYETDTSTQFTRNIRLQIP
                     LCSAAMDTVTEAALAIALAQQGGIGVVHKNMSIERQAEEVDKVKRSESGMIVDPVTIR
                     PDRPVHEALQVMERFHISGVPVVDEGGHLVGIITNRDLRFETRFEIPVSEVMTKQPLV
                     TVPVGTTLEQAKAVLQKHRIEKLLVVDEDKHIKGLITVKDIQKAIKYPTAAKDDLGRL
                     RVAAAIGASGDYRERADELVKARVDCLVIDTAHGHSSRVIDAVKETKRRHPNTDLIAG
                     NIGTAEGAKELIDAGVDAIK"
     gene            complement(1033..1560)
                     /locus_tag="VIJ87_11105"
     CDS             complement(1033..1560)
                     /locus_tag="VIJ87_11105"
                     /inference="COORDINATES: protein motif:HMM:NF024805.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY5444992.1"
                     /translation="MAASIGEQLRLAREERGIPLREICDQTRISVHYLEAIETNDYKR
                     LPGGVFNRSFIKAYARCVGYDEREAIEGYTRYLREHDDSSDDVNTTPMHSKVYTETPA
                     TRSPILTVVLSVLILALLTAAALAALHWFQKRAQSTPEMTSPSYALRVTGVSLYNAHT
                     QDSGLQEADYEAVLQ"
BASE COUNT          419 a          479 c          485 g          494 t
ORIGIN      
        1 ctttaattgc gtcaactccg gcatcgatga gttcttttgc tccttccgcc gtaccaatgt
       61 tgccagcaat caaatctgtg ttggggtgtc gtctctttgt ttcctttaca gcatcgatca
      121 ctctcgaaga atgaccgtgc gccgtgtcga tcaccaaaca atcaacgcgg gctttcacca
      181 gttcatcagc tcgctcgcgg taatcaccgg acgctccaat cgcggctgcg actcgaagcc
      241 gacccaggtc gtctttggct gcggtcggat acttgattgc tttctggatg tctttaacag
      301 tgattagtcc cttgatgtgt ttgtcttcgt ccacgaccag aagtttttcg atccggtgtt
      361 tctgaagtac ggcctttgct tgttcgagcg ttgtgccgac cggaacggtt acgagtggct
      421 gtttagtcat tacttctgaa acgggaattt cgaaacgagt ctcgaaacgc agatcgcggt
      481 ttgtgatgat gccgacgagg tggccgcctt catcaactac cggaacaccg ctgatgtgaa
      541 aacgctccat cacttggagt gcctcatgta ccggacgatc aggtcgaatg gtcaccggat
      601 caacaatcat tccggattcg gatcgcttaa ctttgtcgac ctcctcagcc tgtcgctcga
      661 tgctcatgtt tttgtgaacg acaccgatac cgccctgttg ggccagggca attgcgagcg
      721 ccgcttcagt cacggtatcc atggccgccg agcaaagtgg gatctggagt cgaatgtttc
      781 ttgtgaactg ggtggaagtg tccgtctcgt acggcagtac gtctgaccga tctgggatta
      841 ggagaacatc gtcgaaggtt aagccttcaa gtatttcaga ggtaatcatg tcgtggttaa
      901 gactccttag taatgaatga gtattgggca aatgcagaac tgcccgcctt ttgagcgggc
      961 agtttagttc tcgtgaagca cactttcgag tgtcgcgccg gaaggcgcag acacgcagca
     1021 aagggaatac acttattgaa gaaccgcttc gtaatcagct tcctgtaaac cggaatcttg
     1081 tgtgtgagca ttatacagag agacgccagt aactcggagc gcatacgacg gcgaagtcat
     1141 ttctggtgtt gactgggcgc gtttctgaaa ccagtgaagc gccgccaaag ccgctgctgt
     1201 aagcaaagca agaatcaaca cagataagac cacggttaga attggcgagc gagtggctgg
     1261 tgtttctgtg taaaccttcg aatgcattgg cgtggtatta acgtcatcgg acgaatcatc
     1321 atgctctcgc aaatatcgcg tgtagccctc gattgcctct cgttcatcgt aaccaacaca
     1381 gcgggcatag gcctttataa agctacgatt gaaaacgcct ccgggcaggc gcttgtaatc
     1441 gtttgtctcg attgcctcta gataatgaac ggagattcgc gtctgatcgc agatttcgcg
     1501 taggggtatg ccgcgctcct cgcgggcgag tcgcaattgt tcgccaatac tcgctgccat
     1561 ctccaatcgc tcgattcctg gcggtggtta ggatgggact gatcctgcgc gatactaccc
     1621 ggaagtaaga actatgctga ctcgattgaa ccgacttcta tcgtcgcgcc gcttcggtta
     1681 atgcctacaa ctcccactgt tgccgcacta tagcttgcgc tggtaaacgc tgtcaaactt
     1741 ttgcttctca aaagattggc gtctcttgct tcttcactca cagggtggta cgttgaccgc
     1801 cacagtgacc cggtacagtc gctttcaatc tctacaattt tacaaagtga ggataacgag
     1861 atgtcctgag aagcact
//
LOCUS       DATCGC010001147         3293 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_382611, whole genome shotgun sequence.
ACCESSION   DATCGC010001147 DATCGC010000000
VERSION     DATCGC010001147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3293)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3293)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3293
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_382611"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..3228
                     /locus_tag="VIJ87_11110"
     CDS             <1..3228
                     /locus_tag="VIJ87_11110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444993.1"
                     /translation="VRVRGDIAVDLKMTVGGVTETVTVEAAPVAVQFNSSSTLLTVEN
                     KVIDQLPIRGRNPYNVATLDPTVSPGTGSTSNENRPYHHAYASDIDVGGQTTRANDVL
                     LDGVALNSSYKASYTPALDAVQEVTFQKNAIDSEYGYSAGGVIVLNMKSGTNDFHGSA
                     IANWRNPRFNAVSDPTIRRTAGADESNFRGTNLKIYGGTIGGPIIKNKLFTFTSYEHW
                     NDASPLPFTLTVPTELERNGDFSQSSRNGVIRTIFDPLTSTGTSGTRTAFTGNKIPVG
                     RFDPTALKLLAEMPLPNLPGSQDNLQGFKINETTYWNFSERVDWNYSDRLKTFIRYGQ
                     FKAHLLESNPTGKKLMPLNGSNRYGLSIAADTVYTFSPKWVLNLRGNYHQLTDEYAAP
                     PSLIGQEGIAALFPTNFWTSLYTFDQYYYPAFDVGSSRLGRPGREFWQHPQGYGGSAR
                     LNFYEGAHSLKFGGEYRVDKGKGARFEPITFNIKQAITANANSSPNLNTSGSEWATFL
                     LGFIDNGSIAARVPIQEAVTTGYAGYVMDDYKFNSRLTLNLGLRWEYEPGPVDRGNRL
                     SQQLDLTQPIPEMQATPPAIPAAVTALLNSKNEKQLFNGAWVFTSASNRNAWNRKMWN
                     LLPRLGFAYRIDDKSVMRFGWGRYISPSSKIRDPLGDFVNQYAGFSTSTPGATLAVVA
                     PATGPVPRATLSNPFPNSITPIQQPLGQSLGRYTNLGNSIGAANNATNGIDQYELRPA
                     VNDRFSFSFQREIWYKFVLDFEYFQNKETNLPYAVDLNMADPNFSYETPKSVFNQSVT
                     NPFFNYLTPDKFPGTLRTQSTITIGGLLRPFPQYGVINQTNTSGRGEHLRSFEIQAQR
                     PYAKGVSLLFAYSYQREKTQEFFDDLATFARIFQWRDTDSPRQRFTSAIRWDLPFGKG
                     RTYLNNASKGVDMVLGGWVFTTTTRIYSGRPLFFNQNLIADGNPKISNPTQAKWFDTS
                     KFHALPTSTDPTLPANLHRRDNPWTYPGLYGPGVWQTDGTLSKSFSITERFKLEARIE
                     AYNLFNRLQLANPTVDFNSANFGKITAKLVAYNGREVQYGLRLVF"
BASE COUNT          805 a          887 c          824 g          777 t
ORIGIN      
        1 gttcgcgttc gaggcgacat cgcggttgac ctcaagatga cggttggcgg tgtaaccgaa
       61 acagtaactg tcgaagcggc gcccgtcgcg gtccaattta attcgagcag caccttgttg
      121 acagttgaaa acaaggtcat cgatcaattg ccaatccgcg gccgcaatcc ttacaacgtc
      181 gctactcttg atccgactgt ctcgcccggc acaggttcaa cttccaacga gaatcgtcca
      241 taccaccacg cttacgcgag cgacatcgat gtcggtggcc aaaccaccag ggctaatgat
      301 gttctgcttg atggcgtagc gttgaactcg agctacaagg cttcctatac gccggcattg
      361 gacgcagtcc aggaagtcac tttccagaaa aacgcgatcg actctgaata cgggtacagc
      421 gctggcggcg tgatcgtgtt gaacatgaag tcgggaacaa acgactttca cggttcagct
      481 atcgccaact ggcgtaaccc caggttcaat gctgtaagtg atcccacgat caggcgaaca
      541 gccggcgcag acgaaagcaa cttccgaggc accaacctta agatttatgg gggaacgatt
      601 ggtggtccaa tcatcaagaa caagctgttc actttcactt cctacgaaca ttggaacgat
      661 gcgtcgccgt tgccgtttac gttgactgtc ccaaccgagt tggaacgaaa tggcgacttc
      721 agtcaatctt cgaggaacgg agttatccgc acgatctttg atcctcttac ctctactggc
      781 acgagtggaa ctcgcactgc cttcacaggg aataagatcc cggttggcag atttgatccg
      841 accgcattga agttgttggc agagatgccg ctgccaaacc tgccaggtag ccaggacaac
      901 ttgcagggct tcaaaataaa cgagactact tattggaatt tttcagagcg tgttgactgg
      961 aactactcgg atcgactcaa gacattcatt cgctacggtc aattcaaggc tcatctgctc
     1021 gagtcaaatc cgaccggtaa gaaattgatg ccgctcaacg gcagcaaccg ctacggacta
     1081 agcatcgcgg ccgacacggt ctatacattt tctccgaagt gggtactgaa ccttagaggg
     1141 aattaccacc agctcacgga cgagtatgca gcgccgcctt ctttgattgg gcaggaaggc
     1201 attgctgcgc tgtttcccac taacttctgg acgtcgcttt atacgtttga ccagtactac
     1261 tatccggcct ttgacgttgg cagcagtcgt cttggtcgac ccgggcgtga gttttggcag
     1321 cacccacaag gctacggtgg ttcagctcgc ttgaatttct acgagggcgc acattcactg
     1381 aagtttggtg gtgagtatcg cgtcgacaaa ggtaagggag cccgctttga accaattacc
     1441 ttcaacatca aacaggcaat tactgcaaac gcgaattcca gtccgaacct gaatacctcc
     1501 ggcagtgaat gggccacctt cctgctcggt ttcattgata atggttccat tgccgcgcgc
     1561 gtgccgattc aagaagcagt tacgaccggc tacgcaggct acgtgatgga cgattacaag
     1621 tttaatagtc gcctgactct caatctgggt ttgcgctggg agtatgagcc gggccctgtc
     1681 gatcgcggca atcgcctctc gcagcaactg gacctgactc aaccgattcc ggaaatgcag
     1741 gcgactcctc cagcaatccc tgccgccgta acggcgctct tgaactcgaa gaatgaaaaa
     1801 cagctcttta atggtgcctg ggttttcacc agtgctagca accggaatgc gtggaaccga
     1861 aagatgtgga atctgttgcc acgtttaggc tttgcttaca ggatcgatga taagtcggtc
     1921 atgcggtttg gttggggacg ttacatctca ccatcttcga agattcgcga tccacttggg
     1981 gacttcgtca accagtacgc gggattttcg acgagtactc caggcgcaac actcgctgtc
     2041 gtcgcaccgg ctactggacc agtgccgcgc gcgacattgt cgaatccttt cccgaattcc
     2101 atcacgccga tccaacaacc attgggtcag tcgttgggac gctacaccaa ccttggcaac
     2161 tcaatcggcg cagcaaataa cgccacaaac ggaatcgatc agtacgagtt gagaccagcg
     2221 gtgaatgatc gcttcagctt ctcgtttcaa cgagaaatct ggtacaagtt tgtgctcgac
     2281 ttcgagtact tccaaaataa ggaaaccaac cttccttacg ccgtggattt aaacatggcg
     2341 gatccgaact tttcctatga gacaccgaaa tcggtgttca accaatcggt taccaatccg
     2401 ttcttcaatt acctgactcc cgacaagttt ccaggaacgc tgcgaacaca aagcaccatc
     2461 accatcggtg gtttgttgcg tccgttcccg caatacggag tcatcaacca gacaaatact
     2521 tcgggacgcg gcgagcatct gcgctccttt gagattcaag cccagcgtcc gtacgccaaa
     2581 ggtgtcagcc tcctgtttgc atactcgtac cagcgcgaga agactcagga gttctttgat
     2641 gacctggcta cgtttgcgag aatcttccaa tggcgcgata ccgactcacc acgacaacgg
     2701 tttacgagtg cgattcgttg ggatctgccg ttcggcaaag gacggactta cctaaacaac
     2761 gcatcgaagg gtgtagacat ggtgctcgga ggttgggttt tcactacaac taccaggatt
     2821 tactctggtc gtccgctctt cttcaatcaa aacctgattg ctgatggtaa tccgaaaatt
     2881 agtaatccga cccaggcaaa gtggtttgac acaagcaaat tccacgcgtt gcctacctca
     2941 acggatccga cgctgccagc aaatctgcat cgtcgtgata atccatggac ctatcctggt
     3001 ttgtatggtc caggagtctg gcaaacggac ggtacgctca gtaagtcgtt cagcatcact
     3061 gaacgcttca agttggaagc gcgaattgag gcctacaatc tcttcaaccg tttacaactg
     3121 gcgaacccga cggttgattt caacagcgct aacttcggca agattactgc gaagttagtt
     3181 gcgtacaacg gacgcgaagt tcagtacggt ctgcggttgg tgttctaacg atgcacaatc
     3241 ggatgaacta cgtgggggcg cgatttctca gcgcccccat tttgttatgt ttg
//
LOCUS       DATCGC010001148         1476 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_51103, whole genome shotgun sequence.
ACCESSION   DATCGC010001148 DATCGC010000000
VERSION     DATCGC010001148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1476)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1476)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1476
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_51103"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..212
                     /locus_tag="VIJ87_11115"
     CDS             <1..212
                     /locus_tag="VIJ87_11115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018281842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444994.1"
                     /translation="PSVVGGLVSVPVVAVPTSIGYGASFGGVAALLGMLNSCSSNVTV
                     VNIDNGFGAGFVASLINRRWQQPTD"
     gene            254..>1476
                     /locus_tag="VIJ87_11120"
     CDS             254..>1476
                     /locus_tag="VIJ87_11120"
                     /inference="COORDINATES: protein motif:HMM:NF014503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444995.1"
                     /translation="MFLTFPSPAKKSLPGRTATVGLLLCALLLTGCISAHRTPNLERI
                     FSEARAKNGKRPVIVIPGILGSELINSKTGEKVWPSAFRTAEDGLPMTPDLISNRDDL
                     VPGKIIETVKLARLLPEVYVYRDLLDALRTYAGYHEAEWNNPGPDGDKDAFYVFAYDW
                     RQDNVSNARELVRRIERLKDTLHRPDLQFNVIAHSMGGLIARYAAMYGNQDLPEGEGE
                     IHPTWEGARHINKIVMIGVPNEGSADAFSTLVEGYSITEGLRRRVPLLNKLTAEDAIR
                     SPAVFQLLPHAGFVRFLDESLNTIQIDLYDPEVWKKYGWTPIFNPDFRRRFTNHKAGL
                     GDTDAARLQVLEDYLSAMLKRARRFHQALDAGLNMKQPVPLLAIGGDCEETLNSPIII
                     RDAKQDRWLTLVRPR"
BASE COUNT          357 a          361 c          389 g          369 t
ORIGIN      
        1 tgccatctgt tgttggcggt ttggtcagtg ttccagttgt tgctgtgcca accagtatcg
       61 gctatggcgc atcatttgga ggagtagccg cgctgttggg gatgctgaat tcatgttctt
      121 caaatgtaac agtggtgaat attgataacg gtttcggtgc tggatttgtg gccagtttga
      181 ttaatcggcg gtggcaacaa ccgaccgact aaactgctaa agagcttaaa gttaggataa
      241 agcgagcccc gatttgtttc tgactttccc ttctcctgct aagaaatcac tccccggccg
      301 cacggcaacg gtcggtcttc ttctttgtgc cctcctctta accggttgta tctcggcgca
      361 ccgaacacca aatctcgaac gcattttttc tgaagctcga gcgaaaaatg ggaagcgtcc
      421 agtgatcgtc attcccggaa tcctcggctc tgagctgatt aattcaaaaa caggggagaa
      481 ggtttggcct tccgcatttc gaactgctga agacgggttg ccgatgactc ccgacttaat
      541 ttcgaatcgc gacgatttgg tacccggaaa gatcatcgag acagtaaaac tcgcccgcct
      601 gcttccggaa gtttatgtct acagagacct gctcgatgcc ctgcgaacct acgcggggta
      661 tcacgaagct gaatggaaca atcctggtcc tgacggcgat aaagatgcct tctacgtctt
      721 cgcgtacgac tggcgacaag acaatgttag caacgcgcgc gagttggtac gtcgcattga
      781 gcgtttgaag gacacactgc atcgccctga tttgcagttc aatgtgatcg cgcattcgat
      841 gggtggtcta attgcgcgtt acgcggcgat gtatggcaat caggatctgc ccgagggtga
      901 gggagagatt catcccacgt gggagggtgc caggcacatc aacaagatcg ttatgatcgg
      961 tgtgccgaac gaaggatcgg cagatgcgtt ttcgacactc gtagaaggat attcgatcac
     1021 cgaagggtta aggcgacgag ttccactgct taacaaattg actgctgaag acgcaatacg
     1081 atcacctgct gtctttcaac tgttgccgca tgcaggattc gtcaggtttc tcgacgaaag
     1141 tctgaatact attcaaatcg atctatacga tcccgaagtc tggaagaagt acggttggac
     1201 gccaattttc aatcctgact tccgccgacg ctttacgaat cacaaggcag gacttggcga
     1261 tactgacgct gcaaggctgc aagttttgga agattatctc agcgcgatgt tgaagcgagc
     1321 ccgacgattc catcaagctc tggatgccgg actcaacatg aagcagcctg tgcccttgtt
     1381 ggcaattggc ggagattgtg aagaaactct taactcacca atcatcattc gcgatgcaaa
     1441 acaagatcgc tggttgacgc tagtcagacc ccgcga
//
LOCUS       DATCGC010001149         1415 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_450646, whole genome shotgun sequence.
ACCESSION   DATCGC010001149 DATCGC010000000
VERSION     DATCGC010001149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1415)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1415)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1415
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_450646"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1302
                     /locus_tag="VIJ87_11125"
     CDS             <1..1302
                     /locus_tag="VIJ87_11125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444996.1"
                     /translation="AESLIYRLSQLPNLKVSPTSSVLRYKGKDVDVQKVAADLGVSAV
                     MSGRMVQRGDNLTISVELIDARKNQLIWGEQFERKTSDLLTTQREIASAISQKLQLKL
                     SGEESKGLTKRYTNDNEAYQLYLKGRFYWNKRTGESVQKAIEQFRAAADKDPGFALAY
                     AGLADCYSISSNYTGKRSSETLPLARSNALRAIELDSVLAEPHATLGMVNHFEWHMSE
                     AEAEFKRAIELNPNYPTAHHWYSRFLRGMGRMDEAWAEINRAAELDPLSMVIINNIAE
                     QHIERGDLNAAAEVCGRMIELDPNFWAAHQTFAIVLTKQGKNAQALVEAQKALDLTKR
                     SNAALAFNAHVLGRLGRRAEAETIIKELQEKYARKEADGRDLAVAYAGLDDKDQAFAW
                     LEKAFADHSNFLAVLRLEPALDSLKSDPRWNDLLRRVGTLQ"
BASE COUNT          376 a          346 c          386 g          307 t
ORIGIN      
        1 gccgagtcgc taatctatcg tttgtcgcaa ctgccaaact tgaaagttag tccaaccagt
       61 tctgttctgc gctacaaggg aaaagacgtc gatgtccaga aggttgccgc tgacttggga
      121 gtcagcgcag tgatgtcggg gcgaatggtt cagcgaggcg acaatctcac gatcagtgtt
      181 gaactgatcg atgccagaaa gaatcagctg atctggggcg aacagtttga gcggaaaact
      241 tctgacttgt tgacgacgca acgcgaaatc gccagtgcaa ttagtcaaaa acttcaacta
      301 aaactgtctg gcgaagaatc caaagggctg accaagcgat atacaaacga caacgaagct
      361 tatcagctat atctcaaagg tcgcttttac tggaacaaac gcaccggtga gagtgttcag
      421 aaagcgattg aacagtttag agcggcggcg gataaggatc cgggattcgc tttggcctat
      481 gccgggcttg ctgactgcta ttcaatctct tcaaactaca ctggaaagag gtcgagcgaa
      541 actcttccgc tggcaagatc gaatgcttta cgagcgattg agttggacag cgtattagcc
      601 gaaccgcacg caactctcgg catggttaac cactttgagt ggcatatgtc agaggccgaa
      661 gctgaattca aacgcgccat cgagcttaac ccaaattatc cgacagctca tcactggtat
      721 tcgcgatttc tgcgcggaat gggtcgcatg gatgaagcat gggccgaaat caatcgagcc
      781 gcagaactcg atccgttatc catggtcatc attaacaaca tcgccgagca acacatagag
      841 cgcggcgatc tgaatgcggc ggctgaggtc tgcggaagaa tgattgaact cgaccccaac
      901 ttttgggctg cccatcaaac attcgcgatt gtgttaacta agcagggaaa gaatgcacaa
      961 gcgttagttg aggcgcaaaa agcccttgat ttaactaaac ggtcgaatgc ggctctggcc
     1021 tttaacgcac acgttttagg tcggctgggg cgacgtgccg aagctgaaac gatcatcaaa
     1081 gagcttcagg agaaatatgc gaggaaggaa gcggatggac gcgaccttgc tgttgcgtat
     1141 gccggccttg atgacaaaga ccaggctttc gcatggctcg agaaggcttt tgcggaccac
     1201 agcaatttcc tggcagtgct gcgattggaa ccagcgcttg actcattaaa gagtgatcca
     1261 cgttggaatg atctactacg acgcgtcggt acccttcagt agctacatcg aactaacggg
     1321 cgcgctcttc tgggaccgca ggcgtcctcg cctgcattcg ttgccactag gactcgccaa
     1381 gctagagaag ggcaggcgag gacgcctgcg gtccc
//
LOCUS       DATCGC010001150         1023 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_414192, whole genome shotgun sequence.
ACCESSION   DATCGC010001150 DATCGC010000000
VERSION     DATCGC010001150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1023
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_414192"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..356)
                     /locus_tag="VIJ87_11130"
     CDS             complement(<1..356)
                     /locus_tag="VIJ87_11130"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEY5444997.1"
                     /translation="MLRGLFRTKNLDDILAALGDEAHALKRSLGAFNVTLLGIGAIIG
                     AGIFATVGTAAAGDASRPGAGPSLMLSFGITAIVCAFTALCYAEMAAMVPISGSAYTY
                     SYATLGELVAWIIGWD"
     gene            680..>1023
                     /locus_tag="VIJ87_11135"
     CDS             680..>1023
                     /locus_tag="VIJ87_11135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5444998.1"
                     /translation="MAEPLKFDTLNTSFVNLAAFIRHLRESNFTGRLHVVLDQYEADV
                     FLYGKDAPSVRENDHAASRESKGEAAMQRLLVRAREPGGAITVFEGSISDTVSTPSMI
                     EPERGSEPEAWK"
BASE COUNT          245 a          267 c          280 g          231 t
ORIGIN      
        1 aagtcccacc cgataatcca ggcgactaat tcgccgagcg ttgcgtagga gtaggtgtac
       61 gctgaaccgg agattggaac catcgctgcc atttcggcat agcaaagagc ggtgaaggcg
      121 cagacgatcg cagtgatacc aaacgaaagc atcagcgatg gaccggcgcc cgggcgcgat
      181 gcgtcaccag ccgcagctgt tccgaccgtg gcaaagatac cggcgcctat aatcgcgccg
      241 ataccaagca gcgttacgtt gaacgcccca agtgaacgtt ttagcgcgtg cgcttcgtca
      301 ccgagtgcag ccaggatgtc gtccagattc tttgtacgaa agagtcctcg aagcaagatg
      361 tcgcctccgg agtcgaattg gataactctt acttgttgtt tgcccccgcg ggcctaagga
      421 atgcctgcgg agtttggcat ggaagacggg aaaaggggaa gaaaaaaact ttcaggagag
      481 cgcttctcag ttttgacgac gagctttggt ctttggtctt ggggctttgg ccttcggact
      541 tgtagtctgt cgaccggttg ctttgtgcaa cacacatcgc gttacagcaa cgatcaacca
      601 cgttcgaagg ccaaagacca aaaaccaaag accgtttctt tttcttgaaa cttcccctct
      661 cctgatttag tttcaactca tggctgaacc tctcaagttc gacactttga atacgagctt
      721 cgtcaacctc gcagctttca ttcgacatct tcgtgaaagc aactttactg gcaggctcca
      781 tgttgttctg gaccagtatg aggctgatgt ttttctctac ggcaaagatg cgcctagcgt
      841 ccgggaaaac gatcatgccg ctagccgtga atcgaaaggc gaggcagcaa tgcagcgact
      901 tctggttcgg gcacgcgagc ccggcggcgc gatcacagtt tttgaaggct cgatcagcga
      961 tacggtttct acgccgtcga tgattgaacc cgaacgtgga tcggaaccgg aagcatggaa
     1021 gag
//
LOCUS       DATCGC010001151         1392 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_483388, whole genome shotgun sequence.
ACCESSION   DATCGC010001151 DATCGC010000000
VERSION     DATCGC010001151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1392)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1392)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1392
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_483388"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1392
                     /locus_tag="VIJ87_11140"
     CDS             <1..>1392
                     /locus_tag="VIJ87_11140"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5444999.1"
                     /translation="NSEVAIESIAVLPFQNKSGDPDTEYLSDGLSESLIYRLSQLPKL
                     RVSPTSSVFRYKNKEIDPIKVGDELGVNAVLSGRIVQRGENLTISAELIDVRHDKLLW
                     GEQYERKVSELLQTQREIAKEIVDKLRLKVSGQESAFTKHYTESNEAFQLYMKGRFYW
                     NKRIPSALHKSVEYYEQAIQQDPTFALAYAGLADTYALLGGPEAGGDMAPIEALPKAK
                     AAALKSIQLDASLAEPHVSLAHVSYFYDRDWVVAEREFKRAIELNPNYPVAHHWYAIF
                     LSTIPGRIPEALTEIRRALDLDPTSLIINSWYGRILDVAGQLDEAVEQLKKTVELDPN
                     FILAHYRLGQTYAEKRMYTEAIDEFNKVLNLQDGKATGLMGLAYVYALAGRRPEADKS
                     LNELLELSKQRYVSPGQIGIIYIARGEKDKAFQRLEEANKVYDLNLMRMKVERRFDPL
                     RSDPRFDDLVRRL"
BASE COUNT          386 a          329 c          359 g          318 t
ORIGIN      
        1 gtaacagcga agtcgcgatc gagtcgatag ctgtgttgcc gttccagaac aaaagcggag
       61 atccagatac cgagtatctg tcagatggtt tgtcggagtc gctgatctat cgcttgtctc
      121 aattgccgaa gttgagagtc agtcctacca gctccgtgtt ccgatataaa aataaagaga
      181 ttgatccgat caaggttggt gatgagcttg gcgtaaacgc ggtgctatca ggccgaatcg
      241 tacaacgcgg cgagaatctc acgatcagtg ctgaactaat agatgttcgt cacgacaaac
      301 tgctgtgggg tgaacaatac gaacggaagg tttcggaact acttcagaca caacgcgaaa
      361 tcgccaagga aatcgtagac aaactgcggt tgaaggtgtc aggccaggag tcagcattta
      421 ctaaacacta caccgagagc aatgaagcgt tccagctcta tatgaaagga cggttctact
      481 ggaacaaacg aattccctcc gccctacaca aatcagttga gtattacgag caggcgattc
      541 agcaggaccc gaccttcgcg cttgcatacg cagggctggc cgatacgtac gcactactag
      601 gcggtccgga agcaggcggc gatatggcac cgattgaagc gttgccaaaa gccaaagccg
      661 ctgcgctcaa gtccatacaa cttgatgcat ctctcgccga accacatgtt tcattggccc
      721 acgttagtta cttctatgat cgcgattggg ttgttgctga gagggaattc aaacgtgcca
      781 ttgagctcaa tcctaactac ccggttgctc accattggta cgcgatcttt ttatctacga
      841 ttcccggcag gatacccgag gctttaacag aaatcagacg agctctggat cttgacccga
      901 cctcgttgat tataaactcg tggtacggac ggattctcga tgtggcgggc cagctggacg
      961 aagccgtgga acaattgaaa aagacagttg aattggatcc aaactttatt cttgctcatt
     1021 acaggctggg acagacctac gctgaaaagc ggatgtatac cgaggctatc gacgaattca
     1081 ataaggttct aaacctgcag gatggtaagg ccaccggttt gatgggtctc gcatatgtct
     1141 acgcattggc cggcaggcga ccagaagcgg acaagagtct caatgagctt ctggaattgt
     1201 ctaaacagag atacgtgtcg ccgggtcaaa tcggaatcat atacatagcc cgaggggaaa
     1261 aagataaggc ctttcaacga ctcgaagaag caaacaaagt ttatgatctg aatcttatgc
     1321 gcatgaaagt tgagcggaga tttgatccac ttcgctcaga tccacgcttc gatgatctcg
     1381 tgagacgcct ag
//
LOCUS       DATCGC010001152         1004 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_20570, whole genome shotgun sequence.
ACCESSION   DATCGC010001152 DATCGC010000000
VERSION     DATCGC010001152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1004)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1004
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20570"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..626)
                     /locus_tag="VIJ87_11145"
     CDS             complement(<1..626)
                     /locus_tag="VIJ87_11145"
                     /inference="COORDINATES: protein motif:HMM:NF019342.4"
                     /note="Members of this family of hydrolases with an active
                     site Cys residue belong to MEROPS family C26; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEY5445000.1"
                     /translation="MEKRPLIGIPMRIELETDRFYLSRHYGEAVEAAGGTPVHISLIP
                     KVDYIDSVVDCLDGVLLPGSDSDVDPIRYGQQPHQGLGTVHPIKDETDLLIIAAAERR
                     GLPILAICFGMQVLNVSRGGTLIQDIASQVSAAIKHQQGVPRDRASHKVTLVDGSQLN
                     RLAIDADVLLVNSHHHQAVETAGKDLAVVSRSSDGLIEAVEDPREDRFV"
     gene            784..>1004
                     /locus_tag="VIJ87_11150"
     CDS             784..>1004
                     /locus_tag="VIJ87_11150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013939585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HslU--HslV peptidase proteolytic subunit"
                     /protein_id="HEY5445001.1"
                     /translation="MRSTTVLLVRKDAHVALAGDGQVTLGETVMKASAKKVRRLYNDQ
                     ILAGFAGATGDAFSLLTRFESKLEQSHGNL"
BASE COUNT          238 a          258 c          266 g          242 t
ORIGIN      
        1 acaaaacggt cttcacgggg atcctctact gcctcaatca gtccatcgga cgatcgggaa
       61 acaacagcca ggtctttgcc tgctgtttca actgcctgat ggtggtggct gttaaccagg
      121 agaacatcag cgtcgatagc gagtcgattc aattggctcc cgtcaaccaa cgttactttg
      181 tgagacgccc tgtcacgtgg gacgccctgc tgatgtttga ttgcggctga cacctgcgaa
      241 gcaatgtcct ggatgagggt tccacctcgg gagacattca agacttgcat gccaaaacag
      301 atggctaaga ttggcagtcc acgtcgctct gcagcggcaa tgattagcaa gtctgtttcg
      361 tctttgatcg ggtggaccgt tcccaacccc tgatgcggct gctgtccata gcgaatcgga
      421 tcgacgtccg aatcacttcc aggtagtaga actccgtcga ggcaatcgac aactgagtcg
      481 atgtaatcaa cctttgggat gagactgatg tgcacgggcg tgccgcccgc agcttcaact
      541 gcctcaccgt agtggcgcga gagatagaac ctatcggttt ctaattcaat gcgcatcggg
      601 atgccgatta gaggtcgctt ttccatcttt tgatccaccg ttagccgctg gttcttgcga
      661 aaagtatcat aacccaactt gtgttgaatt gccgtgatcg catgggagtg gccgtccttg
      721 acttacattc aaacgaattc ctatagtgct cattaaagaa acatgccgaa gcgatcccaa
      781 aaaatgcgca gtacaactgt cctgttggta cggaaagatg cgcatgtcgc acttgctgga
      841 gacgggcagg tgacgctcgg tgaaactgtg atgaaggcga gcgctaagaa ggtcagacgt
      901 ctctacaacg atcagatcct ggcaggtttt gcaggagcga ctggcgatgc cttctcattg
      961 ctgactcgct tcgaaagtaa gctcgaacag tctcacggca atct
//
LOCUS       DATCGC010001153         1250 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_149281, whole genome shotgun sequence.
ACCESSION   DATCGC010001153 DATCGC010000000
VERSION     DATCGC010001153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1250
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149281"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            85..1080
                     /gene="holA"
                     /locus_tag="VIJ87_11155"
     CDS             85..1080
                     /gene="holA"
                     /locus_tag="VIJ87_11155"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR01128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HEY5445002.1"
                     /translation="MKTLTRPDLDRSLRESISPLYLLLGSESYLRDTAAQAIADTALS
                     NSLLREFNEFSFSLLSDAVQSAIAAAEQLPMMSDKRVVKIKDFAKLNVDDEPVLIAYL
                     KNPAPSTVTIFIADDLDKRKASSKVLLETCTVVDFSPIKDAEAKNWCKTRLKELKTTA
                     DDQVLSEIIRIVGTDVQTLSTELDKLASAAIDTKKISLELVDDLIGRSRELSNWELGD
                     HLMANNRKRALETLYRLLDDGAEPVMLVGLIGSNYRKLALGKYLFARGGRDEVFRNVA
                     MPPFKRDSFLATVQRSDAAKIAHGIKLIAAADLAIKTSQATPRLQLEMLVCELAG"
BASE COUNT          336 a          295 c          309 g          310 t
ORIGIN      
        1 agaggacccc gcaattctcc gaatgtcgcg tagttttgcc gagagcattg tctccacact
       61 aatcaacgcg gttgagataa agaaatgaag acgctgactc gccctgatct cgatcgctcg
      121 ttgcgtgaaa gcattagccc actttactta ttgctgggaa gcgagagcta tttgcgtgat
      181 accgcggctc aggcaattgc cgacacggca ctgagcaatt cccttttacg cgagttcaat
      241 gaattcagtt ttagtttgct ctcggatgct gttcaatcgg ccatcgccgc agcagaacag
      301 ttgccgatga tgtctgacaa acgcgttgta aagatcaaag actttgcgaa actgaacgtt
      361 gacgatgagc cagtcttaat cgcttatctt aaaaacccgg caccttcgac ggtgacgatt
      421 ttcatcgccg acgatttaga taaacgtaaa gcttcgagca aagtactgtt agagacttgt
      481 acagtcgtcg atttctctcc aatcaaagac gctgaagcca aaaactggtg taagacgcgg
      541 ctgaaagaat tgaagacaac agccgacgat caggtcttga gcgagataat tcggattgtt
      601 ggaactgatg tgcaaacgct ctcgactgaa ctcgacaaac tcgcttcagc cgcaattgac
      661 acaaagaaga tcagtctgga gttagtagac gatttgattg gtcgatctcg tgaattgtct
      721 aattgggaat taggcgacca cctgatggcg aataatcgga agcgggcgtt agagacctta
      781 tatcgcttac ttgacgatgg tgctgagccg gtgatgctcg ttggactcat cgggagtaac
      841 tatcgcaagc ttgcgttagg aaagtattta tttgcgagag gaggccgcga tgaggtcttt
      901 cgcaacgttg cgatgcctcc gttcaaacga gacagcttcc tggctactgt gcaacgaagc
      961 gacgccgcca aaatcgctca tggtatcaag ttaattgccg ctgctgacct cgccatcaaa
     1021 acctcacagg ccacgccacg acttcaactc gaaatgcttg tttgcgagtt ggctggttag
     1081 tccgaactcc aacttttcaa atccggtggg ataaaggacg cgcgggcttc attagaagcg
     1141 agcagctcag atgagtagta tttcaaagcc agccctgaat cattcaacga ctcaattaca
     1201 gaattacatt tctcaactag cgaaaatgat tgcggcagtt tctcgagctg
//
LOCUS       DATCGC010001154         1132 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_483408, whole genome shotgun sequence.
ACCESSION   DATCGC010001154 DATCGC010000000
VERSION     DATCGC010001154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1132)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1132)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1132
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_483408"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(65..144)
                     /locus_tag="VIJ87_11160"
     tRNA            complement(65..144)
                     /locus_tag="VIJ87_11160"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(105..107),aa:Thr,seq:tgt)
     gene            complement(221..294)
                     /locus_tag="VIJ87_11165"
     tRNA            complement(221..294)
                     /locus_tag="VIJ87_11165"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(260..262),aa:Ala,seq:tgc)
     gene            complement(430..507)
                     /locus_tag="VIJ87_11170"
     tRNA            complement(430..507)
                     /locus_tag="VIJ87_11170"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(470..472),aa:Met,seq:cat)
     gene            complement(511..588)
                     /locus_tag="VIJ87_11175"
     tRNA            complement(511..588)
                     /locus_tag="VIJ87_11175"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(551..553),aa:Arg,seq:tct)
     gene            complement(940..1015)
                     /locus_tag="VIJ87_11180"
     tRNA            complement(940..1015)
                     /locus_tag="VIJ87_11180"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(980..982),aa:Val,seq:tac)
     gene            complement(1022..1096)
                     /locus_tag="VIJ87_11185"
     tRNA            complement(1022..1096)
                     /locus_tag="VIJ87_11185"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1061..1063),aa:Phe,seq:gaa)
BASE COUNT          259 a          295 c          283 g          295 t
ORIGIN      
        1 acggagatat caccgcgtct ccgcgtcgtt tcgttcttca tccttgatcc ttcatcctta
       61 cgattggagg cgatgaaggg agtcgaaccc ttatcgtccg gtttacaaga ccgacgctct
      121 gtcatccagt tgagctacat cgccagaaga atggtctttg gtttttggtc tttgtgcttg
      181 gtcctttgct ctttgcagcg cgctctgttg cacatgacga tggtggagct gagaggaatc
      241 gaacctctat atcctgcttg cagggcaggc atcatgccgt tagatcacag ccccagatca
      301 ttgccgattt tagattgccg attgacgatt tgattcggta gcggacttga gttttccctt
      361 ggacctagac cttgaaacat tcgacgttgg accaatcaac aatcgtcaat caaaaatctg
      421 caatgttaat ggtcgcggag gcgggattcg aacccgcacc ctctcgttta tgagacgaac
      481 gctctttcca gcttgagcta ctccgcaaag tggtgagcct ggcaggattt gaacctgcga
      541 cattctgttt agaagacaga tgctcttatt ccgctgagct acaggcccgg aagaaggagc
      601 agtagcagtt ggcaggagca ggaagtgtct ctttgatcct gctcctgcac gctgctcctg
      661 ctcctatcat ggtcggggcg tgaggctggc gcgcctcttc gaactccaca gtcccgacag
      721 tcaccgttct gccgggatga gtcacgcccc gataatcagt aggcaggagg cagtaagcag
      781 aaggagcaat cattgatcaa ttctcatttg ccatttctca ttcatcattt tcactaaatc
      841 cgagagcccg ccttcaaaac caagttccgc gccggccaaa tacatatgag aaatgtgaaa
      901 tgagaattga tcaatgattg ctgctcctgc tcctggtttt ggtgcccaag gaaggactta
      961 aaccttcaac ctctggtttg taggaccagc gctccgtcag ttgagctact cgggccagag
     1021 atggtggtcg gagttggaat cgaaccaacc tttcgggttt ttcagacccg cgctaatccg
     1081 tctcagctat ccgaccgaag attgattcgc cacagatgaa cacggataac ac
//
LOCUS       DATCGC010001155         8266 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_283242, whole genome shotgun sequence.
ACCESSION   DATCGC010001155 DATCGC010000000
VERSION     DATCGC010001155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8266)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8266)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8266
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283242"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..199
                     /locus_tag="VIJ87_11190"
     CDS             <1..199
                     /locus_tag="VIJ87_11190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445003.1"
                     /translation="LTFDQRVAGAATIDEEGNLSVVLNQSRVGKQMIRLFHEGYLNEL
                     SLNGCLREGREVGAAGHRKKR"
     gene            199..483
                     /locus_tag="VIJ87_11195"
     CDS             199..483
                     /locus_tag="VIJ87_11195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445004.1"
                     /translation="MFPWEDPNWNGGSLYQAILMFAGGKRYLMRAPLRLWHEIYWLNK
                     FGENNDKHWTARSTNKVISRGLKDKLKRLEQFGYIRRFPGGIEIMENIHE"
     gene            476..640
                     /locus_tag="VIJ87_11200"
     CDS             476..640
                     /locus_tag="VIJ87_11200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445005.1"
                     /translation="MNKNWFSNLNDGEEVPVKNTFAFLAGAAAALVGVMVGLTAKSAT
                     EVTNNAAKKA"
     gene            672..959
                     /locus_tag="VIJ87_11205"
     CDS             672..959
                     /locus_tag="VIJ87_11205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445006.1"
                     /translation="MTLSIFTQQIMQNAKVHDQRTGQYLFNHLPSEITYYVAGRPFDP
                     FHKDLTAEEVYAWMDNHLVFDGNEIVGVFDGDRLLWEKPAMEKHTTKPLEE"
     gene            964..1329
                     /locus_tag="VIJ87_11210"
     CDS             964..1329
                     /locus_tag="VIJ87_11210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445007.1"
                     /translation="MEFKTFVRKPFQVEAVEITPENMAEIAEMIGGRIKTEDDSSVDY
                     IQLNRQIIPNVGKAYVGWWVTRLGENFRCYAPKVFFEQFSEIKVGEYGRITEGGNLSS
                     EDAGLRLINSSDPAPVDVA"
     gene            1342..1695
                     /locus_tag="VIJ87_11215"
     CDS             1342..1695
                     /locus_tag="VIJ87_11215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445008.1"
                     /translation="MKRILLVVLLAIGLALPVTAAVVAVQPDTHHVTNVEEADAYLSL
                     CFVVPVTAFVAYSDCHTVINNGGLNLQRVHLYCGDDIGGIVKEVRGPWVGRGSTSWAS
                     CAGTPGIYYRSYDLI"
     gene            1758..2261
                     /locus_tag="VIJ87_11220"
     CDS             1758..2261
                     /locus_tag="VIJ87_11220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445009.1"
                     /translation="MKRIITALFITAGIITIAPSATNVFAQPAQVQADCNVITVTAPV
                     GERIIFSVDAEPPMEVSNGATSTAHFFAGGVDANLNPYTMDKHHWAAGNATTGEFQAG
                     DVSGCAPDVPQPEVVGYVNPDPIGFAQPVIEYKVPEVKTVVATADPVTVPGYTTDALV
                     RYLNSPW"
     gene            3264..3587
                     /locus_tag="VIJ87_11225"
     CDS             3264..3587
                     /locus_tag="VIJ87_11225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445010.1"
                     /translation="MMGIKIEPFQSDDNPDKWYWHIVETGNGQIIATGGQDFDSKYNA
                     ERATKNLEEEIRHSTFESDEFIVFRRNEFETVKERILNSMAGLPRDFNYGQLLQDLEA
                     AEVKP"
     gene            complement(3760..4203)
                     /locus_tag="VIJ87_11230"
     CDS             complement(3760..4203)
                     /locus_tag="VIJ87_11230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445011.1"
                     /translation="MPAVIRINPHPKVEMSIPVAGKAGPLGGAGGWTVFVVAVGGFVV
                     VGIGGVSMSVSTVVVLSSAMGTVLGRTVVVVVVLLVLVVVEGEVGGLTQLSTEPSCFR
                     SPLDPSDPSQTTFHVCGLVLSGLGTVPSIEGPNDLGNPCKRLPSM"
     gene            4272..4574
                     /locus_tag="VIJ87_11235"
     CDS             4272..4574
                     /locus_tag="VIJ87_11235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445012.1"
                     /translation="MSNFQQHLEEEMEDFTAKVERLRQERETNPGSCSHCQFETTELK
                     NYSRHYGGNVGAHWLCVYCEGTLSASRLGAGLQKDSAIADVAAMLNLLERRIKGVS"
     gene            4574..4804
                     /locus_tag="VIJ87_11240"
     CDS             4574..4804
                     /locus_tag="VIJ87_11240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445013.1"
                     /translation="MAIITKHLNFEKQQSRWTELHNLLSTMDVPELRYDDVNWLLRNL
                     PINNGNHPQYARAYELCKEIKKEISKAIAAML"
     gene            4826..4996
                     /locus_tag="VIJ87_11245"
     CDS             4826..4996
                     /locus_tag="VIJ87_11245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445014.1"
                     /translation="MSDQPNPGFVDAPDPQPAPQPEPQPVPQPQPEPNQDPQPAPAPE
                     PELPPSDAESEE"
     gene            5404..6270
                     /locus_tag="VIJ87_11250"
     CDS             5404..6270
                     /locus_tag="VIJ87_11250"
                     /inference="COORDINATES: protein motif:HMM:NF016101.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEY5445015.1"
                     /translation="MKKTLISLVLLFNLIFFPGKVFAVPNSTTPCGVVSTAPAKYDHV
                     IWLVFENKTYNSVIGSASAPYLTSLAAKCGNAKGMVAETHPSLPNYIWMTAGSSKGVT
                     DDGPPSAHKLTGPTIFSIVGDWRSLQESMPSNCYKGNSGQYAVKHNPAAYFTDLTSCA
                     TRDVPLTSTPNLSAKFTMIEPNMCNSMHDCSVSTGDAWAAGFIPKLLNSPEYMAGRTA
                     IFVTFDENDGSAGNHIPTIVISPSVRKGVVVTTTFNHCNMQHTTIQLTTIAPYKWAGC
                     PNTVSMRSPFNL"
     gene            6285..6602
                     /locus_tag="VIJ87_11255"
     CDS             6285..6602
                     /locus_tag="VIJ87_11255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445016.1"
                     /translation="MTEANPTMEHMFIFKYYEDLHPSIGKYRVIFVNNFNEYQYEMLN
                     KDMYLARSEFQNQIPMCFLVELYKRREGEGNDWKFENAWQAPKSRAQATEEYYARVVK
                     QHG"
     gene            6595..6777
                     /locus_tag="VIJ87_11260"
     CDS             6595..6777
                     /locus_tag="VIJ87_11260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445017.1"
                     /translation="MDERPSQIRRSSLTLSDGSVITIYFENDSHRVTYKGEEVSVAEA
                     YRLYEEDKAKIQKGES"
     gene            6774..7745
                     /locus_tag="VIJ87_11265"
     CDS             6774..7745
                     /locus_tag="VIJ87_11265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445018.1"
                     /translation="MNDPVQFPAGFTNPIKVGDNTVYEPTVEPEPVPEPTPTPTPEPV
                     PTPTPTPTPTPTPTPSPNPNPSGMMMPFTAPTNFPKTVLREDFMQDAPENQFFNVYGS
                     KFTAYPVPYHDTRGTYRSAPLDFGSYEPRIISVADSMMTMHFRDSADGTRRLVCAPIP
                     YLDPTKALGKYGPASNCRVSIRWRCRTPMPTRKFAWLLWPSVAGTSWPHDGEIDFLEG
                     GLNGTSTAKTFMHRQDATMGNDQASRNSGVPIADGKWHTSTIEWVAGVSFKNWLDGQL
                     QLNETSRVPKHPMRLVIQCETEPINGSGTLQKVDGKVDIDWIVIESK"
     gene            7745..8119
                     /locus_tag="VIJ87_11270"
     CDS             7745..8119
                     /locus_tag="VIJ87_11270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445019.1"
                     /translation="MSFLINNERTTNVLYTPALKNLVKDISDAFEAQFVYLENQHVQD
                     NPTVKDAYTAAIKDAVVATAGALCKNIGDFDVDYFYAACRYPGTHPIHKVGDNPFIQR
                     TNEAEVTALDIVRNRINGNQQS"
BASE COUNT         2359 a         1871 c         2002 g         2034 t
ORIGIN      
        1 tttaactttt gaccagcggg ttgcaggggc ggcaacgatt gatgaagaag gaaatctgtc
       61 agttgttctc aatcaatcaa gagttggaaa acaaatgatt cgattgtttc acgagggata
      121 tttgaacgag ctcagcttga acggatgcct tcgtgaagga agagaagttg gtgcagctgg
      181 acacagaaag aaacgataat gtttccttgg gaagatccta attggaacgg tggttcccta
      241 taccaagcaa ttctaatgtt cgctggagga aaacgatatt tgatgcgagc accgctaagg
      301 ctttggcacg aaatttactg gcttaataaa tttggtgaaa acaatgataa gcattggact
      361 gccagatcta caaataaagt cataagtaga gggcttaaag acaaattgaa gcgcttggag
      421 caattcggtt atattcgccg ctttcctgga ggcatcgaga taatggagaa tattcatgaa
      481 taagaactgg ttcagtaatc taaatgatgg agaggaggta cctgtgaaga acacattcgc
      541 attcctcgcc ggagcagccg ctgctttggt tggtgttatg gtcggtctga ctgcaaagtc
      601 ggctactgaa gtcactaaca acgcagcaaa gaaagcataa gtaaacacca tcaacaggag
      661 tagtttaaat aatgaccttg tctatattta ctcaacaaat aatgcaaaac gcaaaagttc
      721 acgatcaaag aacaggtcag tatctgttca accatcttcc ctcggaaatc acgtattacg
      781 ttgccgggcg accgttcgat ccttttcaca aagatctgac agcggaagaa gtctacgcat
      841 ggatggataa tcatctagtc ttcgacggca atgaaattgt cggggtgttt gatggtgatc
      901 gacttttgtg ggagaaacca gcaatggaaa agcataccac caaaccctta gaggagtaaa
      961 ttaatggaat tcaagacgtt cgtccgtaaa cccttccaag tggaagcggt ggagatcaca
     1021 ccggagaaca tggctgaaat tgccgaaatg atcggcggtc gaatcaagac cgaagatgat
     1081 tctagcgttg attatattca gctcaatcgg caaatcatcc ccaacgttgg aaaagcatat
     1141 gttggatggt gggttactcg cctcggagaa aacttccgat gctatgcacc gaaggtgttc
     1201 ttcgagcaat tcagtgaaat caaggtcggt gaatacggcc gaatcactga gggaggaaac
     1261 ctttcaagtg aggacgcagg tcttcgcttg atcaacagca gcgacccggc acctgtcgac
     1321 gtcgcctgaa aaggagagct gatgaagagg atcctactcg tagttctgct agcgattggt
     1381 cttgcacttc cagtcacagc agcagtagta gcagtacaac cagacacaca tcatgtgaca
     1441 aacgtcgaag aggcggacgc atatttgtca ctgtgctttg tcgttccagt aacggcattt
     1501 gttgcatatt cagattgcca taccgttatc aacaacggcg gtttgaattt gcagcgagtt
     1561 catctctatt gcggagatga tattggcgga atcgttaaag aagttagagg tccttgggtt
     1621 ggtcgaggtt ccacatcgtg ggcttcctgt gccggtactc cagggattta ctatcgttct
     1681 tacgatttga tttagtaagt aatacaacca aacaacccat aatcaataat caaacaaaca
     1741 cagaaagaag aaccaaaatg aagcgcatta tcacagccct gttcatcaca gcaggcatta
     1801 tcacaattgc cccgtccgct accaacgtct ttgctcagcc ggcacaagtc caagctgatt
     1861 gcaacgtcat caccgtcaca gctcctgttg gcgagaggat catcttctcc gtcgacgctg
     1921 agcctccgat ggaagtctcg aatggtgcaa caagcacagc tcatttcttc gccggtggtg
     1981 tggacgcaaa tttgaatcca tataccatgg acaagcatca ttgggcagcc ggcaacgcta
     2041 cgactggaga atttcaggcg ggcgatgttt ccggttgtgc tcctgatgtt ccgcagcccg
     2101 aagtggttgg gtacgtcaat cccgatccga ttgggttcgc tcagccggtc atcgagtaca
     2161 aggtgcccga ggtcaagacc gttgttgcaa ctgccgatcc tgtcacggtt cctggttaca
     2221 cgactgatgc cttggtgcgt tatttgaatt caccgtggtg aggttctcga attgcgctga
     2281 gagcgtggca cgagattaat tgtcatagag cgagatcatt gacagcctcc cactccggtc
     2341 aagtgtcggt aaagatcata ttccgccata cgcaagggac tggttgggcc aagtcctggg
     2401 tgatgacact atataggata tgattaccgg agcgtcgtct gagcgacgtt aaataggctt
     2461 ttggctcaga gcgatgtggg ttgactgaaa atccaagggt gctgatcact ttaaatgtag
     2521 tggcaggata gctggtcccg gcggaaccca catatagaac gtgaaggata acacggaagt
     2581 tatataggag tcatgaccta tatatcgtta acaaaaaacc ggttcgtgcc ttatcctgaa
     2641 aaggtcggca tagtgtagcg agagctttac ctcgtgatgg cgaacatcca taggagatcc
     2701 ctgtctttgg aggcccaggg taaccaggac accccatact gcgtagtagt atgcaagaat
     2761 tgtccatctt atgaaagcta tggaagacga acgacgcagg gatactgata ggaagcatcc
     2821 attgggtgct actgtgatta gcgaaggaag gcgatcacta tattcggtat ccttgcaaga
     2881 tctttttcat agtaagatta ctcaaatgcc atactgattg ggttgaggat cttacttcat
     2941 atgtacttgc tctgttcccg gtgcaagtga aacttttaac ctgataagtc tgcaacaggc
     3001 ggacgaaact gggatccccc gatcgataga tagggtcagg gctgggaact ttctcattaa
     3061 ataaaaactc gtcgggggca cataatcggc cccattagtc gatgagacgg tctggacccg
     3121 gactggttgc gtaagtgcag aaatgtatag tacgcagggc actttcttag tgggttagcg
     3181 ttcgtggatt gagcgctcgt aaaaagtgag gactaatccc cccagcccac tatatttctc
     3241 aataacaatc aaacaaagga gcaatgatgg gaatcaaaat cgaaccattc caatcggacg
     3301 ataatccaga caagtggtat tggcatattg tcgagaccgg caatggtcag atcatcgcta
     3361 ctggtggaca agacttcgac tcgaagtaca acgctgaacg agcgacaaag aaccttgagg
     3421 aagaaattcg tcattcaaca ttcgagtccg atgagttcat cgtctttcga cgcaatgaat
     3481 ttgagacggt caaggagcgg atcttgaatt ccatggcagg tttgcctagg gatttcaatt
     3541 acggtcaact tcttcaagat ctggaagcag cggaagtcaa gccatgaagc aaaaactact
     3601 aatcgttatt cttgctattg tggcagcaac cactcttggg cttctaggta gtttccgaat
     3661 tgtctttgcc aatccatcgc aagctcacat gacctgtcaa ggagggttat attatgaagg
     3721 gcacgattac ccaagggatg gaagtagtac tgttaccgct tacattgacg gcaagcgttt
     3781 gcaggggttt cctaaatcgt ttggaccttc tattgaaggc acagttccca accccgacaa
     3841 aaccaagcca cacacgtgga aagtcgtctg ggatggatca gacgggtcca agggtgatcg
     3901 gaagcaggaa ggttcggtag acagctgtgt cagcccaccc acctcccctt caaccacaac
     3961 aagtaccagt agtaccacaa ccactacgac agttcttcca agcactgtac ccatggcaga
     4021 ggaaagtact acaacggtac ttacggacat cgacacgccg cctatcccaa caaccacgaa
     4081 ccccccaaca gcaactacaa atactgtcca accgccggct cctcctaatg gacctgcttt
     4141 gccagctaca ggaattgaca tctccacctt cggatgggga ttgattctta ttacggctgg
     4201 cattctgatt cttatttgga ataggcgttc actgaaaaac cgagatcaac gttaactgaa
     4261 ggagatattt aatgtctaat ttccaacagc atttagagga agaaatggaa gacttcacag
     4321 caaaagtgga gcggcttcga caggaacggg aaaccaatcc tggaagttgt tctcactgtc
     4381 aattcgaaac cactgagttg aagaactatt ctcgtcatta cggagggaac gttggagctc
     4441 attggctttg tgtttactgt gagggaacgt tgagtgcaag tcgtctagga gcaggactcc
     4501 aaaaagacag cgcaattgca gacgttgcag caatgcttaa tttactcgag cgacgaatca
     4561 aaggagtttc ataatggcaa ttatcaccaa acacctgaat ttcgagaaac agcaaagccg
     4621 ttggacggaa ctccacaacc ttctcagtac gatggatgtg ccagagttgc ggtacgacga
     4681 tgtcaattgg ctgctacgta atctgccgat taacaacggt aatcatcctc agtacgctcg
     4741 tgcatacgag ttgtgcaagg agatcaagaa ggaaatcagt aaggcaatcg ccgcaatgct
     4801 ttaacgatgg agagggggtg acaacatgtc agatcaaccg aatccagggt tcgttgatgc
     4861 tccagatcct cagcctgctc cgcagccgga accacaaccg gtaccgcagc cacagcctga
     4921 gccgaatcag gatcctcaac ctgctcctgc gccagaaccg gagcttcctc cgagcgacgc
     4981 agaaagcgaa gagtgatata cctgccaaag agtttcgatc accgtttgct catggcttga
     5041 tattaacggg ataaagttgg gatagggaaa cctcgacatg ctcaacatgg atatctacac
     5101 gtgcgatatc cctcacatcc ggctggtgag taaatacagc gagggcgtac cctgctacca
     5161 ctccagggag aaatacgtaa tggtagtggt tttaagtacg gttgtgggtg acagttcgga
     5221 aacgaggaac cctcaaaaaa ggttggttgt gagctcttgc cttaaaaacg tagaactctc
     5281 atttcgtaaa atcgtcctct gacccggagg cgctattgac tgataaaccc gtttgactga
     5341 cggactaaac agtaaggcag atgctagtca catcttgctg ggctatttct caaaggagtg
     5401 aaaatgaaaa agacattgat tagtttagtt cttcttttca acctcatatt tttccccggt
     5461 aaagtttttg ctgtacccaa ttctactaca ccttgtggag ttgtatcgac agcgccggcg
     5521 aaatacgatc atgtcatttg gcttgtattc gagaacaaga catacaattc tgtcatcgga
     5581 tcagccagtg cgccatattt gactagtctt gccgctaagt gcggtaacgc taaaggtatg
     5641 gtggctgaga cacatccgag tctaccgaat tatatttgga tgactgcggg ttcaagtaaa
     5701 ggcgttactg atgatggtcc tccgtcggct cacaagctaa caggaccaac tatattctca
     5761 attgtaggag attggcgatc attgcaagaa tcgatgccgt ccaattgcta caaagggaat
     5821 tctggtcagt atgcagtaaa gcacaatcct gctgcatatt tcactgattt gacatcatgc
     5881 gcaacaagag atgttccgtt gacatcaacg ccgaatctct ctgccaaatt cacaatgatt
     5941 gaaccaaaca tgtgcaattc aatgcacgat tgttcagtaa gtactggaga tgcttgggcc
     6001 gctggcttca ttccgaagtt gctcaactcg cccgagtaca tggctggacg cactgctata
     6061 ttcgtgacat tcgatgagaa tgatggatca gccgggaatc atattccgac gattgtcatt
     6121 tcaccaagtg tacgcaaagg cgtagtagtg acgacaacgt tcaatcattg caacatgcaa
     6181 catactacaa tccaactgac aactattgca ccatataaat gggctggttg tcctaacaca
     6241 gtttcaatgc gctctccatt caacctataa tctaaggagt aataatgact gaagcaaatc
     6301 ccaccatgga acacatgttc atcttcaagt actatgaaga tttgcatcca agcattggta
     6361 aataccgtgt tatatttgtc aataatttca atgagtatca gtacgagatg ctcaacaaag
     6421 acatgtatct tgcccgttcc gaatttcaaa atcaaattcc tatgtgcttt ctcgttgagt
     6481 tgtacaagcg gcgtgaaggc gaaggaaacg attggaaatt cgagaatgct tggcaggcac
     6541 caaaaagtag agcgcaagcc acagaggaat actacgctcg ggtggtgaag caacatggat
     6601 gagcgcccat cacaaatcag aagaagctca cttacgttgt cggatggatc tgtaatcaca
     6661 atctactttg agaatgatag tcatcgggtg acgtataagg gggaagaagt tagcgttgcc
     6721 gaagcatatc gactttatga agaagacaaa gctaagatcc aaaaaggaga gtcatgaatg
     6781 acccagtcca attcccagca ggatttacca atccaatcaa ggtgggagac aatacagtct
     6841 atgagccgac agttgagcct gagcctgtac cagagcctac gccgactcct actccagagc
     6901 cagtaccgac gccgactccg acacctacgc cgactccaac gccaacaccg tcgccgaacc
     6961 caaatccgag tggaatgatg atgccgttta cagcaccgac caatttcccg aagacggtac
     7021 tccgtgagga cttcatgcag gatgctcctg agaatcagtt ctttaatgtg tacggtagta
     7081 agttcacggc atatcctgtt ccttaccatg acactcgtgg tacatatcga tctgctcctc
     7141 tggactttgg tagttatgaa ccgaggatca tcagtgttgc tgacagcatg atgaccatgc
     7201 atttccgaga ttctgcggat ggcacacgtc gattggtttg tgcaccgatt ccatatctgg
     7261 acccgacaaa ggctcttggt aagtacggtc cggcctcgaa ttgtcgagtg agcattcgtt
     7321 ggcggtgtag aactcctatg ccaactcgta aattcgcttg gttgttatgg ccgtctgttg
     7381 ctggtacttc ctggccccac gatggagaaa tcgatttcct cgagggtggg ctgaacggta
     7441 cgagtactgc aaagacgttc atgcatcgtc aagacgcaac catgggtaat gatcaagctt
     7501 cacgcaacag tggagttcca attgctgatg gtaagtggca cacgagcaca atcgagtggg
     7561 ttgctggggt cagcttcaag aactggcttg atggacaatt gcagctcaac gagacttcac
     7621 gagtcccgaa gcatccaatg cgtttggtga ttcagtgtga gaccgagccg atcaatggta
     7681 gcggtacgct gcaaaaggtc gacggtaagg ttgatattga ctggattgtg atcgagtcca
     7741 agtaatgagt ttcttaatca ataatgaaag gacaaccaac gtgttgtaca cacctgcgct
     7801 aaagaatctt gtcaaggata tttcagacgc atttgaagca cagttcgttt atcttgaaaa
     7861 tcaacacgtt caagataatc ctacggttaa agatgcatac actgcggcta tcaaagacgc
     7921 tgttgttgca accgccggag ctttgtgcaa aaacatcgga gacttcgacg ttgattactt
     7981 ctacgccgct tgtcgatatc ctggcacaca cccgattcat aaggttgggg acaatccgtt
     8041 tattcaacgg accaacgaag cagaagtaac ggcgcttgat atcgttagaa atcgaattaa
     8101 cggtaatcaa cagtcgtaaa atcgtaaaag ggtctaggtg tacccccacc gcctaggccc
     8161 ttttacatct cataaaaaat tcgcagtttt aacacgctat ataataggag aaacctcctg
     8221 tccctacatg ggatttatat ttttcataag gagaattcat ggaaac
//
LOCUS       DATCGC010001156         2702 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_215362, whole genome shotgun sequence.
ACCESSION   DATCGC010001156 DATCGC010000000
VERSION     DATCGC010001156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2702)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2702)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2702
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_215362"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..819)
                     /locus_tag="VIJ87_11275"
     CDS             complement(<1..819)
                     /locus_tag="VIJ87_11275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445020.1"
                     /translation="MDPNPTISSLSEAEFASLVSTIAADPARRNELTELLHEDHSIYD
                     ERGAATAVRMRGWLLHTLSQVGVSDEALVFILEELDTGTDPYLVAAAARAVRSYSKPS
                     SALAPFVMRAISNIRYRDEPVSFDEYGEYVDDSSGTSPVRELLATLAWLGSNARVVLP
                     DLESIKAQPHGLSKKRLVDLERTLEAIRGAGEETESCCELPRGLKDKFSWGLKSRRSC
                     DSIESTVFEDQNNEAVTFGEFFCGQPSIAVFFYTRCDNPLKCSLTVTKLARIQNL"
     gene            complement(833..1705)
                     /locus_tag="VIJ87_11280"
     CDS             complement(833..1705)
                     /locus_tag="VIJ87_11280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445021.1"
                     /translation="MTTKRKATKKSKAQRPRSARAAMSVATSENQVVKERVAAMAEVP
                     LLVCESDKDLQKVLEVLRNQDEPIEVRLAALQSLQAASFSVIAFESCRGDYIATLRKV
                     ATDPNAEMRQRVLGILAREKDGFAIKKLLDGLKNPDKALVPPEKALQLLSYDIHAEAY
                     PVARAIINKPPNEDAKREALRLLAADAKSAPVFEKLLRDKNETAEIRQVSAAALQALK
                     PDSLQENARAILLDDSDYDEIRATSLTAVTQFGDEESVSKDETLKKHVSRMSTKGGAK
                     VKRGARQFMSKYGK"
     gene            complement(1732..>2702)
                     /locus_tag="VIJ87_11285"
     CDS             complement(1732..>2702)
                     /locus_tag="VIJ87_11285"
                     /inference="COORDINATES: protein motif:HMM:NF012486.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tyrosinase family protein"
                     /protein_id="HEY5445022.1"
                     /translation="AGKFGQPSSNNSDVRIDAKVAASLVGAVKVMVRIRKNANSLTAG
                     ERDRLVAAFAKLNNQGAGRFADFRDMHTAVSSPQAHGAPGFLPWHRAYLLDLERELQN
                     IDPSVALPYWRFDQPSPNIFTLDYFGVSDPLGTVQFSPTNPLQFWKTDGVPGINRRPF
                     FSTAVAPPGLLTQAQTLALGAAYAQFRGMEGNPHGSAHVSFGGFISSIPTAARDPLFF
                     LLHCNVDRLWAKWQRQFARFDFTVAASYDSGANPIGHNLPDTMWPWNGITGPPRPPTA
                     PGGTMAASPCVSAPGPQPRVRDPLDYQGSVNAVSRMGFDYDDVPFA"
BASE COUNT          594 a          726 c          711 g          671 t
ORIGIN      
        1 gagattttgg atccgcgcga gcttggtgac agtcaatgaa catttaagcg ggttgtcgca
       61 gcgcgtatag aagaacactg cgatagaagg ttggccacaa aagaactccc caaacgttac
      121 cgcttcattg ttctgatctt cgaaaacagt cgactcaatc gaatcgcaac tccgacgcga
      181 cttcaacccc catgagaact tgtctttcaa tccacgtggc aactcacaac acgattccgt
      241 ttcttctcca gcaccgcgaa ttgcttcgag cgttcgctcc aaatcgacca ggcgcttttt
      301 cgatagtcca tggggctgag ccttgattga ctccaggtct ggcaggacaa cacgcgcgtt
      361 gctgccaagc caggccaacg ttgcaagtaa ctcacgaact ggactcgtgc cactcgaatc
      421 atcaacgtac tctccatatt catcgaagga gacgggctcg tctcgataac gaatatttga
      481 gatcgcccgc atgacaaatg gagcgagtgc agatgatggt ttggaatagg aacgaaccgc
      541 acgagcggcg gcggcgacta agtaaggatc ggtgccggta tcgagttcct cgagaatgaa
      601 aacaagcgct tcgtctgaaa ctcctacttg cgagagtgta tgcagaagcc aaccgcgcat
      661 gcgaaccgcc gtagctgctc cacgctcatc gtaaattgaa tgatcttcgt ggagcagctc
      721 cgtaagttcg ttacgtcgtg caggatcagc agcgattgtg ctgactagcg acgcaaactc
      781 cgcttcagac agtgaactga tcgtggggtt tggatccatc gatcttcacc gtttacttcc
      841 cgtacttgct cataaactgg cgagcgcctc gtttgacctt agctccgcct tttgtactca
      901 tcctgctgac gtgtttcttc agcgtttcgt cttttgacac tgactcctcg tcaccaaact
      961 gagtaacggc tgtcagactc gtggctctaa tttcgtcgta gtccgagtcg tcaagcaata
     1021 tcgcccgagc attctcctgg aggctgtctg gcttaagtgc ctgtaatgca gccgctgaaa
     1081 cctgtcggat ttcggccgtt tcgtttttat cgcgcaacag cttttcaaag acaggtgctg
     1141 acttggcgtc tgctgccagc agcctcaacg cttcgcgttt ggcatcttcg tttggtggct
     1201 tgttgatgat ggctcgcgca accgggtacg cttccgcgtg aatgtcgtaa ctcaaaagct
     1261 ggagagcttt ctctggcggt accagagctt tgtccggatt ctttaatcca tcaaggagct
     1321 tcttgattgc gaagccgtcc ttctcccgcg cgagtatgcc gagcactctt tgacgcatct
     1381 ctgcgttcgg atctgtcgcg acctttctca gtgtagcgat gtagtcaccg cgacacgatt
     1441 caaacgcgat aacactgaag cttgctgcct gtaaagattg gagcgcagcc agcctcactt
     1501 cgatcggttc atcctggttg cgtaacacct ccaacacttt ttgcaaatct ttgtcacttt
     1561 cgcaaacaag caatggcact tctgccatcg ccgcaacgcg ttccttcacg acttggtttt
     1621 cgctggtcgc gactgacatc gcagcccgtg ctgaccttgg tcgttgcgct tttgatttct
     1681 tcgtagcttt acgtttcgtg gtcatggttc ggatctcctc gtgcaatgca cttatgcaaa
     1741 tggtacatcg tcgtagtcga atcccatacg agacacggca ttgacggaac cctggtaatc
     1801 caatggatca cgcacgcgcg gttgcggacc cggagcactc acgcaaggtg atgcagccat
     1861 cgtgcctccc ggtgccgtcg gcggacgagg tggacctgta attccgttcc agggccacat
     1921 cgtatcaggc agattatgac caatcgggtt ggctccgctg tcgtaagaag ccgcaactgt
     1981 gaagtcgaat ctggcaaact gcctctgcca ttttgcccag agtcgatcta cgttgcagtg
     2041 gagaaggaag aacaacggat cgcgcgcagc ggttggaatg ctggagatga aaccgccgaa
     2101 gctcacgtgt gcggaaccat gagggttacc ttccattccg cgaaactgtg catacgcagc
     2161 gccaagagcg agtgtttgag cttgagtgag tagtcctggt ggtgcgaccg cggtactgaa
     2221 gaatgggcga cgattgattc ccggaacacc gtccgttttc caaaactgaa gtgggttggt
     2281 tggactgaat tgaacagtac caagtgggtc tgaaacgcca aagtaatcaa gcgtgaatat
     2341 gtttggcgat ggctggtcaa aacgccagta aggtaaagca acgcttgggt cgatgttctg
     2401 cagttcacgc tctagatcga gtaggtatgc gcggtgccag gggaggaacc caggtgcgcc
     2461 gtgtgcttgt ggcgaactaa cggccgtatg catgtcgcgg aagtctgcga aacgtccggc
     2521 tccctgatta ttaagcttcg cgaatgcagc gaccaatcga tcgcgttcac cggcggtgag
     2581 actattcgca ttctttcgga ttcgtaccat tactttcacg gcgccaacca ggcttgcagc
     2641 gactttggca tcaatcctca cgtcgctgtt gtttgagctc ggttgtccaa acttgccagc
     2701 ca
//
LOCUS       DATCGC010001157         1264 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_382721, whole genome shotgun sequence.
ACCESSION   DATCGC010001157 DATCGC010000000
VERSION     DATCGC010001157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1264)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1264)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1264
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_382721"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1251)
                     /locus_tag="VIJ87_11290"
     CDS             complement(<1..1251)
                     /locus_tag="VIJ87_11290"
                     /inference="COORDINATES: protein motif:HMM:NF013502.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0008984 - protein-glutamate methylesterase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheB"
                     /protein_id="HEY5445023.1"
                     /translation="MKKDLTEQEGNLQLSEGKALTQNPNNKFIVVGLGASAGGIQALK
                     EFFSRVSTDSGMAYVVILHMSPAHESKLAEILQVTCSIPVTQVSNREVIVPNHVYVIP
                     PNQKLEITDRHLILTTMIGIEERRSPVDLFFRTLAEAHESEAVAVILSGTGANGSMGL
                     KRIKEHGGVAFVQDLNEAEYSDMPRNAIATGMVDYILPVAQIPAKILSYKAHVGTVQV
                     PELPEETPKTDEQALVDIFMQLRIRTGHDFSNYKRATILRRIDRRLGLREVNSLSDYS
                     HYLRENPSEVQLLMKDLLISVTNFFRDHESIEMLTSKVMPRLFESKKSDEPIRVWVPG
                     CATGEEAYSIAILFSEYLSTNGRSPGLQIFATDLDQEAIQVAREGLYKDAEVADISPE
                     RLRRFFNRESDGYRVRRELREVILF"
BASE COUNT          300 a          321 c          313 g          330 t
ORIGIN      
        1 aaataggatc acctcacgca gttcgcgacg aactctgtaa ccatcagact cacgattaaa
       61 gaaacgtcgt agtctttctg gagaaatgtc tgccacttcg gcatctttat aaagtccttc
      121 ccgagcgacc tgaatcgcct cctggtcgag gtcggtagca aagatctgta gaccagggct
      181 tcgcccattg gtcgagaggt actcggaaaa aagtatggcg atcgagtaag cctcttcgcc
      241 agttgcacaa cctggcaccc acactcgaat cggctcgtca gatttctttg actcgaataa
      301 cctgggcatc actttcgacg tcagcatctc gatcgattca tgatctcgaa agaaattagt
      361 aacgctgatg agcagatcct tcatcagtaa ctggacttct gatgggtttt cacgcaggta
      421 atgagagtaa tccgaaagac tgttaacctc gcgcaggccg agtcgcctgt caatccggcg
      481 gagaattgtg gcccgtttgt aatttgaaaa gtcatgtcca gttcgaatgc gcagttgcat
      541 aaaaatatca accagcgcct gttcgtcggt ttttggagtt tcttctggta gctcaggaac
      601 ctgaacagtt ccgacgtgtg ccttgtacga gaggatcttc gccggtattt gggcgaccgg
      661 gagtatgtag tcaaccatgc cagtggcgat ggcatttcgg ggcatatcag aatattcggc
      721 ttcgtttaga tcctgcacga aagcaacgcc gccatgctcc ttaatgcgct ttaaacccat
      781 tgagccattg gcccccgtcc ccgaaagaat taccgcgacg gcctccgatt cgtgtgcttc
      841 cgcgagtgtg cgaaagaaaa gatcaacagg tgaacgccgt tcttcgatac caatcatggt
      901 tgtcagtatg aggtgcctgt ctgtgatttc aagcttttga ttgggaggga taacgtatac
      961 gtggttggga actattacct cccggttact aacctgggta accggtatgg agcaggtcac
     1021 ttgtagaatc tccgcaagct tgctctcgtg cgctggcgac atgtgcagga taacgacgta
     1081 ggccatcccg ctgtcggtag aaaccctgga aaagaactcc ttaagtgcct gaatcccgcc
     1141 ggctgaggcc cccagcccca cgacgataaa cttgttattt ggattctggg tcaacgcctt
     1201 accttctgat agctgtagat tgccctcttg ttctgtaaga tcttttttca ccagtttctt
     1261 ctac
//
LOCUS       DATCGC010001158         1183 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_183676, whole genome shotgun sequence.
ACCESSION   DATCGC010001158 DATCGC010000000
VERSION     DATCGC010001158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1183)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1183)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1183
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183676"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1022)
                     /locus_tag="VIJ87_11295"
     CDS             complement(<1..1022)
                     /locus_tag="VIJ87_11295"
                     /inference="COORDINATES: protein motif:HMM:NF012239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEY5445024.1"
                     /translation="MKVYPTEAIRNLAVIGHGDAGKTQLISSLLYVAGATPRWGKVDE
                     GTTVTDYEEDSIARKITLNTALAHLDHRDTKLNFIDTPGYAAFIAHARPALRVADCAI
                     AVVDGVKGVEVQTEKSWAYANEFLVPRVMVVTKLDKEHADFGTALESAQKTFSRAIIP
                     FTLPIGKEKDFRGVIDVVHMKAYELGADGQAKEIDIPAESRDLLEKTRERLVELVAES
                     NDQLMEKYFEQGTLDEADILPNINNAIAQSKLCPVFAVSSTTQVGLRALLNGLVDYAP
                     DPAHHEAEWGKPVDAGPDAERLGRKYNDSEPFSAYCFRTVADPFAGRINVFKVISGHL
                     QTDANA"
BASE COUNT          260 a          288 c          306 g          329 t
ORIGIN      
        1 aatgcgttgg cgtccgtttg gaggtgtccg ctgatgactt tgaacacatt gattcggcca
       61 gcaaagggat cagcaacggt gcggaagcag tacgcagaaa acggttcgct atcgttgtac
      121 tttcggccga gtcgttcagc atccggaccc gcatcgactg gcttacccca ctcagcttcg
      181 tgatgtgccg gatccggcgc gtaatcaacc agtccattca acagagcccg cagaccgacc
      241 tgggttgtgc tcgatacggc gaacaccgga cagagtttgc tttgtgcgat tgcgttgttg
      301 atgttgggaa ggatatcggc ctcatcgaga gtgccctgct cgaagtattt ctccattaac
      361 tggtcatttg actcggcaac taactcaact aatcgttccc gcgtcttttc gagaaggtct
      421 cgactctctg cgggaatatc gatctctttt gcctgaccat ctgcgccgag ttcgtacgct
      481 ttcatgtgga caacatcgat aacaccgcga aagtctttct cttttcctat tggcagggtg
      541 aaaggaatga ttgctcgact aaaagtcttc tgtgcgcttt cgagtgcggt gccaaagtct
      601 gcgtgctctt tatcgagttt agtgacgacc atcacgcgcg gtaccaggaa ctcattcgcg
      661 taggcccaac tcttttctgt ttgaacttca acacctttaa ctccgtcgac aacggcgatt
      721 gcgcaatcgg cgacgcgtaa tgctggtctt gcatgggcta tgaaagcagc atatccagga
      781 gtatcaataa aattgagttt tgtatcgcga tgatctagat gagctagcgc ggtattgagt
      841 gtaattttgc gagcaataga atcttcttcg tagtcggtga cggtagttcc ttcgtcaact
      901 tttccccaac gcggtgtggc tccggcgacg tagagaaggg aactgataag ttgcgtcttc
      961 cctgcgtcgc cgtgtccaat gacagccaga ttacggatcg cttcagtcgg atagactttc
     1021 atacgtttga ttcctttcag gcatgcgatt ttggcgaagg atacccatcc gctttgaata
     1081 actgcttcta atcttgggcg tgatgtgttc cgtggtttgc ggctaattta tatgacgctt
     1141 aaggtcaaag gcaagttcag ttcagaatgc acgaatggta gtc
//
LOCUS       DATCGC010001159         1456 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_85144, whole genome shotgun sequence.
ACCESSION   DATCGC010001159 DATCGC010000000
VERSION     DATCGC010001159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1456)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1456)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1456
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85144"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1437)
                     /locus_tag="VIJ87_11300"
     CDS             complement(<1..1437)
                     /locus_tag="VIJ87_11300"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5445025.1"
                     /translation="MSERIGDQTSLAIVISRVGVIYFGLGNNEKALEFATEGNRLFER
                     SDEKWGAAENRVMLGKIHHAFGEEELALKYLNEAVDRFRSLSMPRLESQALQDIGLVY
                     STLNDNQKAIDAYQRSMKLLRPGQDQQRLAYTLNYIGRCYENEHDYKTASDYYDRALP
                     LSRVSSDQVAEILTLHNLAQVERALGNLDAARANIEASIALTESFRAKVVSQDLRASY
                     FATVRQNYELYIEVLMMLHKMRPSEGFDSAAFGVSERARARSLLETLQEAQTNVREGV
                     DPSLLEREKTLQAELNLKAERQMKLTGSQEKGEVGKVAQEINSLTAELAAVRDQIRST
                     SPHYAALTAPQPLDLREVQQRLIDDDSILLEYALADERSYVWVVTRTAVSTYELGSRK
                     DIEESAKRLYANLVAYQIVPGQPVEQTEERRKRADDSIQSETTSLSKLILGPLAGTLG
                     NKRLVIIPDGALQYIPFQALLDPDSNASV"
BASE COUNT          324 a          379 c          366 g          387 t
ORIGIN      
        1 aaccgaagcg tttgaatcgg gatcgagcaa cgcctgaaac gggatatatt gaagagcccc
       61 gtccggaatg atcactaagc gcttgttgcc gagtgttcca gccagtgggc caagaatcaa
      121 tttactcaac gaggttgttt cgctctgaat tgaatcatcg gcccgcttac gccgttcttc
      181 ggtttgctcg acaggttgtc ccgggacaat ttgataagcg acgaggttgg cgtacaggcg
      241 tttcgcggac tcctcaatgt ctttcctgga tcccagttcg taagtcgaca ctgccgtgcg
      301 agtgactacc catacataac tgcgttcgtc agcaagcgca tactccaaca agatcgaatc
      361 atcatcgatt agtcgttgct gaacttcacg caggtccaaa ggctgaggtg cagtcagcgc
      421 agcgtaatga ggactcgtcg atcttatttg atcacggacg gctgctagtt cagctgtcag
      481 cgagttaatt tcttgagcca ctttgccaac ttcgcccttt tcctggctgc cggttaactt
      541 catctgccgt tcggctttca ggttcagttc cgcctggaga gttttctcgc gctcaagaag
      601 tgaagggtcg acaccttcac ggacattagt ctgcgcctct tgcaatgttt ccagtagtga
      661 ccttgcccgc gctctttcag aaactccgaa cgccgcggaa tcaaaacctt ctgacggtcg
      721 cattttgtga agcatcatca gtacttcaat gtaaagctcg tagttctgac gcaccgttgc
      781 gaagtaagag gcgcggagat cctgacttac aaccttggcc ctaaacgatt cggtcaatgc
      841 aatcgacgct tctatgttcg cgcgcgccgc atcgagattt ccaagcgcac gctctacctg
      901 agcgaggtta tgcaaagtaa gaatctccgc cacttgatct gaagagacac ggctcaatgg
      961 caaggcccga tcgtaatagt cagaagcagt tttgtagtcg tgctcgtttt cgtaacagcg
     1021 gccgatgtag ttaagggtgt acgcgagacg ctgctggtcc tggccgggtc tgagcaattt
     1081 cattgagcgc tgataagcat cgatcgcttt ttggttgtcg tttagagttg agtaaacaag
     1141 gccgatatcc tgtagcgctt gtgattcaag gcggggcatg gacaaagatc gaaaccggtc
     1201 gacggcttcg ttaagatact tcagtgctaa ttcttcctcg ccaaaagcat gatgaatctt
     1261 tcccagcatt acccgatttt cggcggcgcc ccacttttcg tcgctacgtt caaacaacct
     1321 gtttccttcc gtggcgaact ctaaggcttt ttcgttgttg ccgagtccga aatagatgac
     1381 tccaacccga cttatcacga ttgctagaga cgtttgatcg ccgatgcgtt cgctcaattc
     1441 gcgggctttg ttcagt
//
LOCUS       DATCGC010001160         1699 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_450800, whole genome shotgun sequence.
ACCESSION   DATCGC010001160 DATCGC010000000
VERSION     DATCGC010001160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1699)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1699)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1699
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_450800"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1407
                     /locus_tag="VIJ87_11305"
     CDS             <1..1407
                     /locus_tag="VIJ87_11305"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEY5445026.1"
                     /translation="QLMQRKLDQSRLASQIPGAQVGFVYIDGETPEGKPRYVFGSVVS
                     GVSNLESITQLKKSDRLLAGSIGKTFVSSLALMLVQDGKLNLDDKIEKWLGSETWFKK
                     LPNAKDITLRMLLNHSSGIDNHAELENFQKQALKSPGRNIKYEELIEWVLNKKPLFPA
                     GTGYHYADTNYILAGMIIEKATGKSLYEQIEDRILKPFKLERTIPSNALTIPEMATGY
                     LENKPVIVGGKFTINPQWEWAGGGFASNAEDLARWASLLYGGAVLTQKSLDEMFNSTS
                     SGEGSTYGLGAMVTRSKWGRSYGHDGEFPGYSSDMRYYAKYNIAIAVMANADGTFGAD
                     RFLSSACDDFAGVIIGATGGKQISQAEQLKFQAQAETWLGLIFGGKFDESWEQLSDRL
                     QRRFPKDVWANTMKAFLNKAGKFKSRKLTAIVYSNPESKSIAIDFESSFSKLPTASET
                     LTLELENGVWKVESYSLR"
BASE COUNT          438 a          386 c          450 g          425 t
ORIGIN      
        1 cagttgatgc agagaaaact cgatcagtcg agacttgcca gtcagatccc cggagcgcaa
       61 gtgggctttg tctacatcga tggcgaaact ccggaaggta agcctcgata tgtttttggt
      121 tctgtagtct ccggtgtctc caacctggag tcgatcacac agcttaagaa gtcggatcgt
      181 ttgctggcag gaagtatcgg caagactttt gtttcgtcgc tcgcgcttat gcttgttcag
      241 gatggaaagc tgaatctaga tgacaagatc gaaaagtggt taggctccga gacctggttc
      301 aagaagctgc caaatgcgaa agacattacc ctgcggatgc tgctgaatca ttcgagcgga
      361 atcgacaatc atgccgaact cgaaaacttt cagaagcaag cgttaaagag tccggggcgt
      421 aatatcaagt atgaagagtt gatcgagtgg gtgctcaaca agaagccact ctttccggct
      481 ggtaccggct accattacgc cgacacgaac tacatactcg cggggatgat tatagaaaag
      541 gcgaccggca agagtcttta cgaacagatt gaagacagaa ttctgaaacc cttcaagttg
      601 gaacggacaa ttccgtcgaa tgctttgacg attcccgaga tggccaccgg atacctggaa
      661 aacaaacccg taatcgttgg cggaaaattt acaatcaacc cgcagtggga atgggcgggt
      721 ggtggttttg cctccaatgc agaagacctc gctcgttggg caagcttgtt gtacggcggt
      781 gcagtgctta ctcaaaagag tctcgatgag atgttcaata gtacgtcgag tggtgaaggt
      841 agcacttatg gtcttggggc catggtcacg cgcagcaagt ggggacgaag ctacgggcac
      901 gacggcgagt ttccaggcta ctcatcggac atgcgctact acgcgaagta caacatagca
      961 atcgcggtga tggccaacgc cgacgggacg tttggcgcgg atcgttttct ttcttcggcc
     1021 tgcgacgact ttgccggcgt catcatcgga gcaactggag ggaagcagat ttcgcaagcc
     1081 gagcaactca agtttcaagc acaggctgaa acgtggttag gtttgatctt tggtggcaag
     1141 tttgacgaaa gctgggaaca actatctgat cgacttcagc gacgctttcc gaaagatgtt
     1201 tgggcaaaca cgatgaaagc gttcttgaac aaggccggta agtttaagtc gcggaaactg
     1261 acggcaattg tttactcaaa tccagagtcg aaatccattg caattgattt cgaaagttcg
     1321 ttcagtaagt taccgacggc ttccgaaaca ttgactctcg aattagaaaa tggcgtgtgg
     1381 aaagtggaga gctattcgct gcgttaggcc tgtgttcact tctgagaatt cttgcagtaa
     1441 tatcttgcgc agtcagacaa tcacttacgt ctcgaccgaa gtaatttgta gtttttagta
     1501 gcagtagtaa cgacttcacc gttttcttgt tttccccatc ttcaaatcaa ccttgcggat
     1561 tctaaaatga tcaaacaggg gtttttcatg catcgtagtt cgctcttctt cgtcatcatt
     1621 aagatcatct gtgcggtgat gccgggcatt ttgcttgccg caccgatttc cgcagcaagg
     1681 gctccaatgg gttccaccc
//
LOCUS       DATCGC010001161         1923 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_450834, whole genome shotgun sequence.
ACCESSION   DATCGC010001161 DATCGC010000000
VERSION     DATCGC010001161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1923)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1923)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1923
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_450834"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..675
                     /locus_tag="VIJ87_11310"
     CDS             <1..675
                     /locus_tag="VIJ87_11310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase"
                     /protein_id="HEY5445027.1"
                     /translation="LGQADGSVAGATNTTAHTVRAALHCIGVRAGFKLVSSFFLMSLP
                     TNQFGHNGALIYADCGVVIEPSAAELAEIALASADSCKALLGTEPRVAMLSFSTKGSA
                     QHRLIDKVVEATRTVKARAPELNVDGELQVDAALVESVAQSKAPGSSVAGRANVLIFP
                     DLQAGNIGYKLTERLAGATAIGPILQGLDKPANDLSRGCKAEDIVDAIAITAVQAQAR
                     KASNPG"
     gene            747..1919
                     /locus_tag="VIJ87_11315"
     CDS             747..1919
                     /locus_tag="VIJ87_11315"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY5445028.1"
                     /translation="MYFIKHTNQLFLALALAGAIQVSAQQSKPSPSPSPSPSPSPSPA
                     PVVLDDESIRVFTEEVRLPVVALDAYGHYDPTLEPEDVLVLEDGVIQQVKSLRHIPAN
                     VLFLLDTGGELSGLGGMSKSTSLTKEVAANLIGRLAEGSWISVVQSGSSAEVIQPWTR
                     DKAAALKVIRTKLYSSKRSRISDAIVAAAQQLKDRPEGSRHVVMITDGVDSPGGKTER
                     SAAVKKLVAARATVHIISYTEFVRQKSDKKTTEVGARQMPTSSNPTVWTDPTLPPGTT
                     RSPAFGIGVRFDPAMRRQRKAYEAEVKKSQQVLTNIADETGGKLLLPLSEDEMLAKSN
                     EVARAIGAEYVVTYRPKHPLAEARAGEYRRIQVQSRKVGLSLHSRRGYVVPTPANE"
BASE COUNT          474 a          509 c          520 g          420 t
ORIGIN      
        1 ctgggccagg cggatggatc agttgccggc gccacaaata cgaccgcgca caccgttcgc
       61 gcagctcttc actgcatcgg agtgcgggcg ggtttcaagc tcgtttcgag tttctttctc
      121 atgtcacttc ccactaacca atttggacac aatggcgcat tgatttatgc agactgtgga
      181 gtcgtgatcg aaccaagtgc agctgaactt gccgaaattg cgttagcctc agccgattcg
      241 tgtaaggcac tcctgggaac agaaccacgc gtagcaatgc tttccttctc aacgaaaggc
      301 agtgctcagc atcgattgat tgacaaggtt gtcgaggcta ctagaacagt taaagcacga
      361 gcgcccgagc taaacgtcga cggtgagtta caggttgacg ccgcgttggt tgaatcagtg
      421 gctcagtcga aagcgccggg atcgtccgtt gccggacgcg cgaacgttct catcttccct
      481 gatctccaag ccggaaacat tggctataaa ctgacggaac gattagccgg cgctaccgcg
      541 atcgggccaa ttctccaggg tcttgataag cccgccaacg acttatcacg tggttgcaaa
      601 gctgaagaca tcgtcgatgc gattgctatc actgccgtcc aggctcaagc gcgaaaagct
      661 tcgaacccgg gctgaggcaa ctcagtcccg acacgggcat caaacagccg actcctaatt
      721 ctttcgattg atcgcacttt cccgctgtgt actttattaa acacactaat caactctttt
      781 tggcgttggc tttggcaggc gccatccaag ttagcgctca gcaatcgaag ccctcgccat
      841 caccttcacc atcaccttca ccatcaccaa gccccgcgcc tgtcgtatta gatgatgaat
      901 ccattcgggt gtttacggag gaagtcagat taccggtagt tgctctcgat gcttatggtc
      961 actacgaccc gacacttgag cccgaagatg ttctggttct cgaggacggc gttatccaac
     1021 aggtcaagag tctccgtcat attccagcga atgtgctctt cctgctcgat acaggcggcg
     1081 agctaagtgg actcggtggc atgtcgaaga gtacgtccct cacaaaagag gttgctgcta
     1141 atctgatagg acgactagct gaaggttcat ggatttcagt cgtgcaatcg ggaagttccg
     1201 ccgaagtgat tcaaccgtgg acgagggaca aggcagctgc gctaaaagta attagaacga
     1261 aactctattc atcgaaacgc tctcgcatat cagacgcgat cgttgctgcc gctcaacaac
     1321 tgaaggacag gcccgaaggc agccgccatg tggtgatgat tacggatgga gttgactcgc
     1381 cgggaggcaa gacggagcgc tcagcggcgg ttaaaaagct ggtagcggct cgcgccaccg
     1441 ttcacattat cagctacacg gaattcgtca gacaaaagag cgacaagaaa actactgagg
     1501 ttggggcgag acaaatgccc acgagttcaa acccgaccgt gtggacagat ccaacacttc
     1561 cgccaggcac aacccggagt ccagcttttg gtattggggt tagattcgat ccggcgatgc
     1621 gtcgtcaacg taaagcctac gaggcggaag tgaagaaaag ccagcaggtg ctgaccaata
     1681 ttgctgatga gactggcggg aaattgctac tgccgctttc ggaagatgag atgctcgcaa
     1741 agtccaacga ggtcgcgcgc gcaatcggtg cagaatacgt ggttacttat cgtccgaaac
     1801 atccgctcgc ggaagcgcgc gccggtgaat acagacgtat tcaagtgcaa tctagaaaag
     1861 ttggattgag tttgcattcg cgacgcggat atgtggttcc cacgccggct aacgagtagg
     1921 tga
//
LOCUS       DATCGC010001162         2972 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_450838, whole genome shotgun sequence.
ACCESSION   DATCGC010001162 DATCGC010000000
VERSION     DATCGC010001162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2972)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2972)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2972
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_450838"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1089)
                     /locus_tag="VIJ87_11320"
     CDS             complement(<1..1089)
                     /locus_tag="VIJ87_11320"
                     /inference="COORDINATES: protein motif:HMM:NF024299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5445029.1"
                     /translation="MFNREKLVLAVAILLCVFSSSTAAFAATEPRMDESAAEAASLNN
                     MAVTSAKDNKYDEAIDLLKRAIALRPDQYMAHYNLGCIFQVKKKFDLSIEAFNETLRL
                     KPEFADAYHHLGVSYNETKRYADAIESLNRALRLTPDNADSLYELGFAYYMLGRDEDA
                     VNEFKQATRLKPDSSAAYNSLGVSYCHLHQFKEAIESLERAAHLAPDSADVYNNLGSV
                     YVDDGRPKEAISAFTQALRLKPDYPAALNNLGMAYASIEDYDRAIESLQQATRLKPDL
                     AEAQYNLGFVFSKKGRAKLAIKSYEQALLLKPDFAEAHNNLAVIYVQRGDRARALEQY
                     TLLKAIDYDLAQKLFAMIFKDKILTVGSR"
     gene            complement(1248..>2972)
                     /locus_tag="VIJ87_11325"
     CDS             complement(1248..>2972)
                     /locus_tag="VIJ87_11325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445030.1"
                     /translation="QIQDTLSSTVGNHTFRFGGDVNIQRSSQGIPFNSRGILTFAGGG
                     GFNAFGNFVDQFSGRSGGGAAIQFGSPIIFPNAFYQNYFVNDTWRVLENLTLNLGLRY
                     ENYGTPFNAIRFPAFAGFDQPVETVALQERDNNNFAPRFSFAYQPRFFKRFFGESKTV
                     FRGGFAVNYDFFFNNILTNTAATVPNSFGVTNFGASLPVDTDPRGIARFGVGSLPTTG
                     TPDPFATVNTIPRNLVNPETFVYNFGIQHELPFKLISDVAYVGSRGTHLFINEQLNPG
                     VGGFNTLTRAFSNRGSVVARTNGGDSSYNSLQARLERGFSSGLLLRFAYTYSKAIDDV
                     ASEVFVTTGGSSVGSDPFNRRVDRSLASFDVPHRFVATFIYDVPSLAKSGFGHALLGG
                     YSLAGTYRLQSGNAQSPFVGGIDLNGDGSATNDRPVISNPNAPANSVGFSNFIAENFI
                     SGVTSPTGFSDLNGNPVNPADVRFLVSESIRTGIAGRNILRGPRQNRLDLSLTKSVNL
                     GFTRLEADRFEIRFDYFNAFNTPQFAPGTGDVTDTTFNDFRFGTGNLNIGNVNSGRIG
                     QFQLRYVF"
BASE COUNT          777 a          720 c          760 g          715 t
ORIGIN      
        1 ccttgatccg acggtgagga tcttgtcctt aaagatcatg gcgaagagtt tctgggccag
       61 atcgtaatcg atcgccttaa gaagcgtgta ctgctccaat gcccgagctc ggtcaccacg
      121 ctggacgtag atgacggcca ggttgttgtg agcctcagcg aaatccggtt taagaagcag
      181 ggcttgctcg taagatttga tggccagttt cgcccgaccc tttttgctga agacaaaacc
      241 gagattgtat tgagcctctg ccaaatctgg ttttagtcgg gtagcttgct gcaatgactc
      301 aatggccctg tcgtagtctt cgattgaagc gtaagccata ccgagattgt ttagggcagc
      361 agggtaatct ggcttgagcc ttaaggcctg ggtaaacgcg ctgattgctt ctttggggcg
      421 accgtcatca acgtagaccg atccgaggtt gttatagaca tcggcagaat ccggtgcgag
      481 atgggcggcg cgctcaagtg attcgattgc ctctttgaat tggtgcaaat ggcaatagga
      541 aactcctaag ctgttatatg ccgcgctcga atctggtttt aatcgagtgg cttgcttgaa
      601 ctcattaaca gcatcttcat cacgtcccag catgtaatag gcaaacccaa gctcataaag
      661 tgaatcggcg ttatcaggtg tcaggcgaag cgcgcggttt aaactctcaa tagcgtccgc
      721 atatcgttta gtttcattgt aagagacacc aagatgatgg taagcatccg cgaactccgg
      781 ttttagtcgc aatgtttcat taaaagcctc gatcgatagg tcaaatttct tcttaacctg
      841 aaagatacaa cccaggttgt aatgggccat gtattgatct ggtcttagtg caatcgctct
      901 cttaagcaag tcgatcgctt cgtcgtattt attatccttt gccgaagtta cggccatgtt
      961 gtttagtgaa gcagcctcag cggcagattc atccattcga ggttctgtcg ctgcgaacgc
     1021 cgcggtgctt gatgaaaaga cacataacag tatcgctaca gccaggacca atttttcgcg
     1081 gttgaacatc aatctcacct ccaaacttgt ctagttcaaa taccaaattt gaaggccaaa
     1141 tattcctgag aacgtcgctc acgatgacga gtcaagaagt caagaatgca aaagggcgac
     1201 ctcgaaaagt cgcccctcta caacttggtt tttcagtgtg aaagatttta gaagacgtat
     1261 cgcagttgaa actgtccgat gcgcccacta ttcacgttgc ctatattgag attgcccgta
     1321 ccgaaccgga agtcgttgaa cgtagtgtct gtcacgtcac ctgttcccgg agcaaactgc
     1381 ggagtgttga atgcgttaaa gtaatcaaag cgaatttcaa agcgatccgc ttccaaccga
     1441 gtgaaaccca aattgacgga cttcgtcagg cttagatcta aacggttctg ccttggtcca
     1501 cgcaggatgt tgcggcccgc aattccagtg cggattgatt cactcacgag gaaacgaacg
     1561 tcagccgggt tgaccggatt gccattaagg tctgaaaagc cggtcggcga agtgacgccg
     1621 gagataaagt tctccgcgat gaagtttgaa aaacccaccg agtttgcggg agcgtttgga
     1681 ttacttatga ctggacggtc gttggtggcg ctaccgtctc cgttcagatc tattcctccg
     1741 acgaacggac tttgtgcgtt gcccgactgc aagcgatagg ttccggccag ggagtaaccg
     1801 cccaacagcg catgaccgaa tcccgatttt gccagactcg gcacgtcgta aatgaatgtc
     1861 gccacgaatc gatgtggcac atcaaacgaa gcaaggctgc gatcaactcg acgattgaac
     1921 ggatcggaac cgacactcga acctccggtt gtgacaaaca cctcactcgc aacatcgtct
     1981 atagcctttg aataggtgta cgcgaaacgc aacagcaaac cgctactaaa acctcgctca
     2041 agacgggctt gcaacgagtt gtagcttgag tcgccgccat ttgtgcgcgc cacaactgaa
     2101 ccacgattgg aaaatgctct ggtcagtgtg ttgaacccac caacacctgg gttcagttgt
     2161 tcgttgatga acagatgggt tccgcgggaa ccgacataag ctacatctga gatcaacttg
     2221 aaaggtagct cgtgctggat cccaaagttg taaacaaatg tctcagggtt caccagattg
     2281 cgaggaatgg tgttcacggt tgcaaaagga tcgggagtgc cggtggttgg caaagaacca
     2341 acaccaaatc tcgctatacc gcgtggatcc gtgtcaaccg gcagtgaagc gccaaagttt
     2401 gttacgccaa acgaattcgg cacagtggcg gccgtgttcg tcaaaatatt gttgaagaag
     2461 aaatcgtagt tgacagcaaa gccgccgcga aagaccgttt tgctttcacc gaagaaacgc
     2521 ttaaagaacc gcggttggta agcaaaacta aatcgcggtg caaagttgtt gttatcacgt
     2581 tcttgaaggg caacagtctc gaccggctga tcgaaacccg caaaagcagg aaagcgaatc
     2641 gcgttaaacg gagtgccgta attctcgtaa cgcagaccga gattgagtgt tagattctcc
     2701 aacacacgcc aggtgtcatt gacgaagtag ttctggtaga acgcgttggg gaaaatgatt
     2761 gggctgccaa actggattgc cgcaccacct ccacttctgc ctgagaattg atcgacaaag
     2821 ttgccaaacg cattgaatcc accgccaccc gcaaacgtca aaatacctcg ggagttaaaa
     2881 gggattccct ggcttgagcg ctggatgttc acatcgccgc cgaaacgaaa cgtgtgattg
     2941 cctaccgtgg acgaaagagt gtcttgtatt tg
//
LOCUS       DATCGC010001163         1393 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_382782, whole genome shotgun sequence.
ACCESSION   DATCGC010001163 DATCGC010000000
VERSION     DATCGC010001163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1393)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1393)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1393
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_382782"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            24..1022
                     /locus_tag="VIJ87_11330"
     CDS             24..1022
                     /locus_tag="VIJ87_11330"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEY5445031.1"
                     /translation="MSSTLADLANETERSLWETKLACRVESFWYPYRSLANIQTLEQV
                     CAVAGLDLLEVCRGPCRRIADIGAGDGDLAFFFEKMGFSVEIIDNEYTNFNRLEGARL
                     LKEVMNSPVEIQSVDLDSEFALPHKKYDTVFFLGTLYHLKNPFFVLEKLARMTTRCFL
                     STRVTKHTPDGQSLAQYPVAYLLDPEECNNDDTNFWIFTDQGLKRLIHRTGWKILSYL
                     TVGETISSTPGDPDHDERAFCLLERRPPILSAFPNPVPAGKELGKTTVSWDTTDGSIG
                     NVYVSIDGGKESLFADSRRGTAVADWIKTGPTYEFRLYNSDHTELLASVVVKRTTR"
     gene            complement(1120..>1393)
                     /locus_tag="VIJ87_11335"
     CDS             complement(1120..>1393)
                     /locus_tag="VIJ87_11335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445032.1"
                     /translation="NRSATQSFGYAEQPGRLHDIVHIGNDYNGNKARPADYHSTAGQR
                     NVSADHGSAVMQAPLSPEMKNRLKALSKDEDLPDNARRIVREYLAR"
BASE COUNT          324 a          351 c          354 g          364 t
ORIGIN      
        1 ttaagcacac cgattcttaa cacatgagct ctacacttgc tgacttggcg aatgagacag
       61 agcgaagctt atgggaaacg aagctggcgt gccgtgttga gtcattttgg tacccatacc
      121 gatcattagc gaatattcag acgctcgaac aagtctgtgc cgtcgccggc cttgacttgc
      181 tagaggtgtg tcgagggccc tgtcgcagaa tcgccgatat tggagcaggc gatggcgatc
      241 tcgcgttttt cttcgagaaa atgggcttct ccgttgagat aatcgacaac gaatacacaa
      301 actttaaccg tttggaggga gcacgccttt tgaaggaggt aatgaattcg ccggtggaaa
      361 ttcagtccgt cgatttagac tcggagtttg cactaccaca caaaaagtac gataccgttt
      421 tctttctcgg aacactctat cacttaaaga atcctttctt cgtcttggag aagctggcgc
      481 gaatgacgac acgttgtttt ctgagtactc gggtaactaa acacacccct gacggtcaaa
      541 gcctggcaca atatcctgtc gcttatttgc tggatcccga agagtgcaat aacgacgaca
      601 ccaatttctg gatctttacg gaccagggtt tgaagcgact gatccatcgt accggttgga
      661 aaattctgtc ctaccttact gtcggcgaga caatatcctc aacccccggg gatccggacc
      721 acgacgaacg cgcgttctgt ctgttggaaa ggcggccgcc aattctgagc gcgtttccca
      781 accctgtgcc cgctggaaag gaattgggca aaacaacggt ttcgtgggat accaccgatg
      841 ggagcatcgg taacgtttat gtttcaatcg atgggggcaa ggagtccctg ttcgctgact
      901 ctcgccgagg tactgcagtc gcggactgga ttaaaactgg cccgacctac gaattccgtc
      961 tttacaactc agatcatacc gagctgttgg caagtgttgt tgttaaaaga acaactcgtt
     1021 agcgatatgg ctctttcgaa atgtggcgcg actatttccc ttgattgtta ggttcgacaa
     1081 accttcgccg ataaggcact aactgactcg cgagcttttc tatcgcgcga gatattcgcg
     1141 gacgatgcgg cgggcattgt cgggcaagtc ctcatctttg gaaagcgctt tcaacctgtt
     1201 tttcatctca ggcgaaagcg gcgcctgcat tacggcgctc ccatgatccg ctgacacatt
     1261 gcgttgacca gccgtgctat gataatcagc tggtctcgct ttgttaccgt tgtagtcgtt
     1321 accgatatgc acgatatcgt gtagtctgcc tggttgctct gcatagccga aactctgagt
     1381 ggcgctccta ttt
//
LOCUS       DATCGC010001164         3093 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_115813, whole genome shotgun sequence.
ACCESSION   DATCGC010001164 DATCGC010000000
VERSION     DATCGC010001164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3093)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3093)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3093
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_115813"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..800)
                     /locus_tag="VIJ87_11340"
     CDS             complement(<1..800)
                     /locus_tag="VIJ87_11340"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HEY5445033.1"
                     /translation="MNRRVDVEVELDTKEITIGGAHGKSVEQQSHNKGRHALVLGGSL
                     AGLLAARVLTDHYDRVTIVERDSFPTEPIPRRGVPQMNHVHALLVRGRLILEQLFPGL
                     NDEMMSAGAPLFDMADDLAWLTPGGWGVRFQSDLRMLCFTRPLLDFHVRQRLAEKYRV
                     QVLDNTEVVRLLPDAQNKGLTGALVRSHNAETELLADLVVDATGRGSQARRWLTEIGH
                     TAPEETVIDAHIGYASRLYRIPKDFHGEWRCSIVQAAPPKSKRGGLVV"
     gene            981..2771
                     /locus_tag="VIJ87_11345"
     CDS             981..2771
                     /locus_tag="VIJ87_11345"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY5445034.1"
                     /translation="MRNRQDKRFYSFGAFRIDVTERVLFGERGTVPLTPKVFDTLLLL
                     VENNSHVLGKQELIERIWPDSFVEDNNLAQNISILRKALGQSPGGQDYIQTVPKRGYR
                     FVAEVREDWEEGAPVVVRERTRSRIVVEEEIDEPMALEGPAVLPPATHDFENTPFHLP
                     ETQYARSGEVNIAYQVVGDAPLDLVFVMGWVSHMEYFWREPRFAKFLMRLASFSRLIL
                     FDKRGTGLSDRVPIHELPTLEQRMDDVRAVMEAVGSEKAALVGVSEGGPMCSLFAATY
                     PEKTLALVMIGTYAKRICDDEYPWAPTTEQRQHFFEEMREQWGGPVGVEERAPSVAND
                     PKFRDWWATYLRMGASPGAAVALTQMNAEIDVRRVLPTIRVPSLVIHRTGDLLLNIDE
                     GRFVADCIPGSKFVELPGDDHLPFVGDQDAILDEVEEFLTGVRHSLEPDTVLATVLFT
                     RIVSAKDNRNWDNLLRRLRVQIGKEINWFRGREIDMVGDRPLAIFDGPARAIRCAMAI
                     VEYASRLGVEMRVGLHTGECEIVDGKVQGMATQVGACVANEAQSGEVLVSRTVKDLVA
                     GSGIAFEDRGVHSLPGVGEWRLFEVQRSAK"
BASE COUNT          708 a          792 c          883 g          710 t
ORIGIN      
        1 tcgacaacga gtccgcctcg tttacttttt ggcggcgcgg cttgaacgat tgaacaacgc
       61 cactcgccgt ggaagtcctt gggaattcga tagagacggc tggcataacc gatgtgcgca
      121 tcaattaccg tttcctcggg agctgtgtgc ccgatctctg tcagccagcg gcgagcctgc
      181 gaaccgcggc ccgtcgcatc cacaaccagg tccgcaagga gttcagtctc ggcgttgtgt
      241 gatcggacca acgctcccgt caatcctttg ttttgagcgt ctggaagcag acggacaact
      301 tccgtgttgt ctaaaacctg cacccggtat ttctcagcaa gtcgctgtcg cacatgaaag
      361 tcgagtaacg gtcgagtaaa gcagagcatc cgcaagtccg actgaaatcg aacaccccaa
      421 cctcccggtg tgagccatgc taagtcgtct gccatgtcga aaagcggagc accggcagac
      481 atcatttcat cgttgagtcc tggaaagagc tgttcgagaa tcagccgacc ccgaacaagt
      541 aatgcgtgaa cgtgattcat ttgaggcacg ccacgacgag gaatgggctc cgttggaaat
      601 gaatcgcgct caacaatagt tacgcgatcg tagtgatcag tcagcacacg cgctgcgagc
      661 aaacccgcca ggcttccacc caggaccagc gcatgtcttc ctttgttatg tgattgttgt
      721 tcgacacttt tcccgtgtgc gcccccaatt gtgatttcct tagtgtcgag ttctacttcg
      781 acatctaccc tgcggttcat acttctaatt cctttcaact attctctgtc tacagatttg
      841 tgttttagaa tgattgccac tttcgggatg tggacaacga cttggcgtcg acggattcga
      901 caatagctcc cgaccctcat cagagtcgtt agaaagctct gaattccctc tgagattctt
      961 ttcaaagagt tctgagaacc atgcgaaatc gacaggacaa gcgcttttac tcgtttggag
     1021 cgtttaggat agacgtcacc gagcgagtgt tgtttggtga gcgcggcacc gtcccgctga
     1081 ccccgaaagt cttcgacacc ctcctcctac tggtagaaaa caacagccac gtactgggca
     1141 aacaggagct gatcgaaaga atctggccgg atagcttcgt agaagacaac aacctggccc
     1201 agaacatttc gattctccgg aaagcgcttg gccaaagtcc cggtggccag gactacattc
     1261 aaacagtacc gaagcgcggt tatcgtttcg tggccgaagt tcgcgaggat tgggaggaag
     1321 gcgccccagt ggtcgttcgc gaacgaacga ggagtcgaat cgttgttgaa gaggagattg
     1381 acgaaccgat ggccctcgag ggcccggctg tactcccgcc tgccactcac gactttgaaa
     1441 acacgccctt ccacctgccg gaaactcagt acgcacgcag tggcgaggtc aacatcgctt
     1501 atcaagtagt tggcgacgcg ccactcgatc tggtttttgt gatgggttgg gtttcacaca
     1561 tggagtactt ctggcgggaa ccacgctttg ccaagttcct gatgcggctt gcatcgttct
     1621 cgcggctgat tcttttcgac aagcgcggaa cagggctttc ggatcgcgta cccattcacg
     1681 aactgccaac gctcgagcaa cgaatggatg atgtgcgcgc agtgatggaa gcagtcggct
     1741 ccgagaaagc agcgctagtt ggtgtttctg aaggtgggcc aatgtgcagt ctgtttgctg
     1801 caacatatcc tgagaagacg ttggcgctag taatgattgg cacgtacgcc aagcgaattt
     1861 gcgacgacga atatccctgg gcgccaacca ctgaacagcg acagcatttc ttcgaagaga
     1921 tgcgcgagca atggggtggt cctgttgggg tcgaagagag agcgccgagt gttgcaaacg
     1981 atccgaagtt ccgtgactgg tgggcgactt atttgcggat gggtgcaagt cccggtgctg
     2041 cggtggcttt gacgcaaatg aatgctgaga tagatgtgcg acgcgtctta cctacgattc
     2101 gcgtgccttc actggtgatt caccgaacag gggatctgtt gctgaacatt gacgaaggcc
     2161 gctttgtagc agactgtatt cccggttcaa agtttgtcga gctgccggga gacgatcatc
     2221 ttccgttcgt cggggatcaa gatgcgatac tcgatgaagt ggaagagttt ctgactggag
     2281 tacgtcacag tctcgagcct gacacggtgc tggctacagt tttgttcaca cgaattgtca
     2341 gcgcgaaaga caaccgaaat tgggacaact tgctgcgacg tctgcgcgtt cagattggca
     2401 aagagatcaa ctggtttcgt ggtcgtgaaa tagacatggt cggtgatcgg ccgttagcaa
     2461 tcttcgacgg accggctaga gcgatacgat gcgcgatggc aatcgtcgaa tacgcttcgc
     2521 gattgggagt ggaaatgcgg gtcggcttgc acacgggcga atgcgagatc gttgatggca
     2581 aagtgcaagg catggcaacg caggttggcg cctgtgtggc aaacgaagct cagagtggcg
     2641 aagtattggt ttcgcgtacg gttaaggatc tggtggccgg ctcaggaatc gcttttgaag
     2701 accggggtgt gcactcatta ccgggtgtag gtgaatggcg actctttgag gtgcagaggt
     2761 cggcgaaata gtatctcttt atttcgtccc cagtggcggc tttgccgcta cccgtgcgga
     2821 aaggctttgc ctttccggcg tgtcattaag agctccagcg gctacgccgc cgaggcgaag
     2881 cctcaaaact ctaaacatca caccggaaag ccagaggctt tccgcaagga gtgcggcaaa
     2941 gccgccgtac taaggtatgg acgggttgta atggataaga gaaactcggt aaatgaacaa
     3001 ccaatcgtac cctttctcag atcttgcact tgcccgccga cttgaacgca cagaggcgca
     3061 tggcaacgcg gcgtttgtcg aagcgcgggc cca
//
LOCUS       DATCGC010001165         1932 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_215534, whole genome shotgun sequence.
ACCESSION   DATCGC010001165 DATCGC010000000
VERSION     DATCGC010001165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1932)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1932)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1932
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_215534"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1496)
                     /locus_tag="VIJ87_11350"
     CDS             complement(<1..1496)
                     /locus_tag="VIJ87_11350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445035.1"
                     /translation="MFERGGKRRLEVGLPDKEEDPGKPDKGLSARGFGSAQRTDPVFL
                     GLQKTRLLDPTLNFLGTNDHPGDYRSSGCSACHVIYANDRDPSHSAFYNQAGNLGRSQ
                     TADTNIPKDESGHPIKHQFTSQIPSSQCMVCHMHPGTNMVASYLGLTWSDNESDGSRM
                     YPATQHNPSQDEEQEKLNRNPEGASLRGLWSDFDFLAKTGTPDFNALLKNTQFADSHG
                     HGWLFRKVFKRDRKGNLLDAQGNIVSPDDPEKFNKAVHLNDIHLERGMHCVDCHFRQD
                     AHGDGVLYNEPRAAIEITCEDCHGSVRQRASLFTSGFAAATVTGTAAERRKTQNQPLV
                     GQDLTRIRTRDESGARIPIFQRVTRDRKRKNEKGTDVDLKTGDIVQNSMVVPGRWWRV
                     PQTLDTVTPGTRDFSERSQYAKTIQKDNTTWGVVPTDGKQLAHRDTDMTCVACHSSWV
                     TSCFGCHLSMQANRKMPNRHNEGGNSRNFTQYNFQVLRDDIFMLGRDGT"
     gene            complement(1524..>1932)
                     /locus_tag="VIJ87_11355"
     CDS             complement(1524..>1932)
                     /locus_tag="VIJ87_11355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445036.1"
                     /translation="VKKQAHVQPRFPSQWTRNGKNTSANPERTNTLLAKESWEFVRFI
                     NPGDLRVVSKTCGGGACHEVESKNVSRSMMTHGAMLWGAALYNNGSFHLKDPRFGESY
                     NEDGTPQTLLQTATEEQRRAQGFLSVLDPIPRW"
BASE COUNT          412 a          511 c          513 g          496 t
ORIGIN      
        1 gtgccgtcgc gaccaagcat aaagatgtcg tcgcgcaaga cctgaaagtt gtactgcgtg
       61 aagttgcgag agttgccacc ttcgttgtga cgattcggca tcttgcgatt tgcctgcatc
      121 gataagtgac agccaaaaca actcgtaacc catgatgagt gacaagcaac gcaggtcata
      181 tccgtgtcgc gatgagctaa ttgtttgccg tcagtcggca caacacccca ggtcgtattg
      241 tctttctgaa ttgtctttgc gtactgcgag cgttcgctga aatcgcgcgt gccgggtgtg
      301 actgtatcga gcgtttgcgg aacgcgccac caacgaccgg gaacaaccat cgagttctga
      361 acgatgtcgc cagtctttag gtcgacgtca gttccctttt cgtttttgcg ttttcgatcc
      421 cgcgtcacgc gttgaaagat cggaatgcgg gcgcctgact cgtcccgtgt gcgaatacgc
      481 gttagatcct gaccaaccaa aggctgattt tgtgtcttcc gacgttcggc ggctgtacca
      541 gtaaccgtcg cagcagcaaa gcccgaagta aacagagacg ctcgctgtcg aactgagcca
      601 tgacaatctt cacaggtgat ctcaattgca gcgcgcggtt cgttatacaa aactccatcg
      661 ccgtgtgcgt cctggcggaa gtgacagtcg acgcagtgca ttccgcgttc gagatgaatg
      721 tcgttgaggt gcacggcctt gttgaacttt tcgggatcat ctggcgaaac gatattgcct
      781 tgcgcgtcga gcaaattccc cttccgatcg cgtttgaaaa ctttgcgaaa caaccaaccg
      841 tgaccatgtg aatctgcaaa ctgcgtattc ttcagcagcg cattgaagtc aggcgttccc
      901 gtcttcgcaa gaaaatcaaa gtcggaccaa aggccgcgca gactcgcgcc ttcaggattg
      961 cgattcagtt tttcctgttc ttcatcctga ctgggattgt gttgcgtcgc cggatacatt
     1021 cgcgagccgt cgctctcgtt gtccgaccag gtcagcccga gataactcgc caccatgttt
     1081 gtgcccgggt gcatatgaca aaccatgcat tgcgatgatg gaatctggct cgtgaactga
     1141 tgcttgatcg gatgacccga ttcgtctttt gggatgttcg tgtcagccgt ttgcgaacga
     1201 ccaaggttgc ccgcctgatt gtagaaagcc gaatgcgacg ggtcgcgatc gtttgcatag
     1261 ataacgtggc aggctgaaca accggatgat cggtaatcgc ccggatgatc attggtcccg
     1321 agaaagttca gcgtgggatc aaggagccgt gttttttgca aaccgagaaa gactggatca
     1381 gttcgttgcg ctgagccgaa tccgcgcgcg ctgagtcctt tgtcgggttt accagggtct
     1441 tcttccttgt cgggtaaccc aacttcaagc cgtcgctttc cgcctctttc aaacacccgc
     1501 agcacgttgc ccggttgtga tatttaccaa cgcggaatcg ggtcgagcac acttaaaaag
     1561 ccctgggctc gccgttgctc ttcagtagca gtttgtaaga gagtctgtgg tgttccgtct
     1621 tcgttatagc tttctccaaa ccgcgggtcc tttaagtgaa aacttccgtt gttataaagc
     1681 gcggcgcccc agagcatagc gccgtgagtc atcatgctgc gcgagacgtt ctttgactcg
     1741 acttcatgac aagcaccgcc gccgcaggtc ttacttacaa ctcgcagatc cccagggttg
     1801 ataaagcgaa cgaattccca actctctttt gcaagaagag tgtttgtgcg ttcaggattt
     1861 gcgcttgtgt ttttcccgtt ccgtgtccac tgggacggga accgaggttg aacatgcgct
     1921 tgttttttta ca
//
LOCUS       DATCGC010001166         2668 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_249984, whole genome shotgun sequence.
ACCESSION   DATCGC010001166 DATCGC010000000
VERSION     DATCGC010001166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2668
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249984"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..294
                     /locus_tag="VIJ87_11360"
     CDS             <1..294
                     /locus_tag="VIJ87_11360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445037.1"
                     /translation="GQPLSEPKIIKLDPAILDSYIGQYSDGSDSFTIVRRGDRLFGQA
                     PRDPEVELFAVSQTEFIIKAFDARIEFLKDANGRVTALVERAGGESGTLKKIK"
     gene            655..2562
                     /locus_tag="VIJ87_11365"
     CDS             655..2562
                     /locus_tag="VIJ87_11365"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family peptidase"
                     /protein_id="HEY5445038.1"
                     /translation="MRRPEFIKQLVTMAVLISLCTALVVSTNTKAKAALMPLPTSKVS
                     PDLRELINSGNGNQRVKLIVQSTNPGLLGALLQTVGGIVTSLLSNLNIRIVDVVANAA
                     DIIAADPSVTYVSLDAPVRGSGHVVTTSGAQQVRVQRNALGVTSTLDGSGVTIAILDS
                     GIDTHHKSFSSPGKIKFSKDFTGQNRTDDPWGHGTHVAATAAGDGASTNGAFEGVAPG
                     ASLVNLRVLNSDGVGSVSGILAALDWVIGNKGTYNIRVVNMSLGTPAISSYQDDPICN
                     AVRKLVDSGVVVVAAAGNIGRNADGQKIYGAIHCPGNEPSAITVGASNSYGTDPRNDD
                     TVTSFSSRGPTRSFSVDQYGLKHYDNIIKPDLVAPGNKIISAEAANNQLLAEYPELET
                     NNYSTSNMKLMYLSGTSMSTPMVSGAAALLFEANSNLTPNLVKMLLMYTAQPLENFNT
                     FDQGAGQLNVAGAVNVAKLVNYSNGLLGIGRTTFGQNLLNSSTPAPQTTISNSTFTWT
                     QGLILNHSTITGRDLIQKYQVSYGKGYLLGDGVNEGLATQDLNTQMWVRGLSLSSYLT
                     RSDGSALFGGSVFFSNVILLGDGFALGDGYPMGDGFAIGDGYAMGDGFALGDGFAIGD
                     CSTGEPGPGMR"
BASE COUNT          662 a          750 c          633 g          623 t
ORIGIN      
        1 ggtcagccgt tgtcggaacc gaaaatcatc aagctcgatc ctgctatcct cgattcctat
       61 atcggccaat actcagacgg cagcgacagt tttactattg tccgacgcgg tgaccgtctc
      121 ttcggccagg cacctcgaga cccggaagtc gagctattcg ccgtctcgca aacagaattc
      181 attatcaaag cctttgacgc tcggatcgag tttctgaagg acgcgaatgg aagagttacc
      241 gccctggtcg aaagggccgg cggcgagagc ggaacactca agaagatcaa gtagccccgg
      301 cagagggcgg gaacccaatt tggaatcact ggtgctacct ctgtgctcca cacttattct
      361 taatacgcaa tgaactcctg aagctttttc aaatagaccg accctcgccc actttgacta
      421 aagctcggtc aaaatgccga aacttcaggc caacgcttaa caattctaat ctcaacgaat
      481 tccgcacttt cctcagcaat tcggtcgaaa acaactaaat cacctactgg cacgggcctc
      541 gcactactga ctgcgctcga agttgagcgc tgctctttat gagttcatta gctgttgccc
      601 agaggaattc aacggcactg aaccttttac tttgcaggaa ccctagtgaa acgaatgcgc
      661 cgtcccgaat tcataaagca gctggtcacc atggcggtgc ttatctcact ttgcacggca
      721 ctcgtcgtat ccaccaacac aaaagcaaaa gctgctctca tgcccctacc gacgagcaag
      781 gtgtcccccg accttcgcga gctaatcaac tcaggcaacg gaaaccaacg cgtgaaactg
      841 attgttcagt cgaccaatcc gggcttactt ggcgctctat tgcaaacggt tggtggcatc
      901 gtcaccagct tgctgtcgaa ccttaacatt cgcattgtcg atgtcgttgc caacgctgcg
      961 gacattatcg cagccgatcc atcagtgacc tatgtctctc tagatgcccc ggttcgcggt
     1021 tcaggtcacg tcgtaaccac aagcggcgcg caacaagttc gcgtacaacg aaatgcttta
     1081 ggtgtaacct caacactcga cggctctggt gtcaccatcg caattcttga ctctggaatt
     1141 gatactcacc acaaatcgtt ctcttccccc ggaaaaatca aattcagtaa agacttcacc
     1201 ggtcagaatc gcactgacga tccgtggggt cacggaacac acgtcgcggc gactgctgcc
     1261 ggtgatggcg catcaactaa tggcgctttt gaaggcgtcg ctcctggtgc aagtctcgtc
     1321 aaccttcgcg tgttgaattc ggatggtgtc ggcagcgtgt ccggcatcct cgccgctctt
     1381 gattgggtaa ttggcaacaa gggaacctac aacattcgcg tcgtgaatat gagtctcggc
     1441 acaccggcca ttagctctta tcaagacgat cctatttgca atgctgttcg caagcttgtc
     1501 gactcgggcg ttgtcgtagt cgcagctgcc ggtaacattg gaaggaacgc cgacggtcaa
     1561 aagatctacg gcgcgattca ctgcccgggt aacgaaccct cggcaatcac tgtcggagcc
     1621 agcaattcct acggcaccga tccaagaaac gacgacaccg taaccagttt tagctcacgt
     1681 ggtccgacgc gcagtttttc agtcgaccag tacggtctca agcactacga caacatcatc
     1741 aaacctgatc tcgttgcccc cggaaataaa atcatctcgg cggaagctgc caacaaccag
     1801 ttgctcgccg aataccccga actcgaaact aacaattact ccacttcaaa catgaaactg
     1861 atgtacctca gtggtacatc gatgtcgacg ccaatggtgt cgggcgccgc cgctctgctc
     1921 ttcgaagcaa attcaaatct aactcccaac ctagtcaaga tgctgctgat gtatacagcg
     1981 cagccgcttg aaaacttcaa cacgttcgac cagggcgccg gccaattgaa cgttgctggt
     2041 gcagtcaacg tagcgaaact cgttaactac agtaacggac tgcttggcat cggaagaact
     2101 acctttggtc agaatctact gaactcgtct actcctgccc ctcaaacaac tatctcgaat
     2161 tccacgttta cctggacaca aggcttgata ctcaaccact caacaattac cggtagagat
     2221 ctgatccaga aatatcaggt cagctacggc aaaggttatc tgctcggtga tggagttaac
     2281 gaaggattgg caacccagga cctcaacact caaatgtggg ttcggggcct ttcactcagt
     2341 agctacctga cgagaagcga cggctccgcg ctgtttggtg gctccgtttt ctttagcaac
     2401 gtcattttgc tgggcgatgg tttcgctctc ggtgatggtt acccgatggg tgatggtttt
     2461 gctatcggcg atggctatgc aatgggcgac ggtttcgcac tcggcgatgg ctttgctatc
     2521 ggcgactgct caaccggcga accaggaccg ggaatgagat aggaaccgtg aagctgtaat
     2581 gaactcaatc tactctgaag gttttttcgt tcgtacggaa tgaagaatcc aagacaacat
     2641 ttacccagct ttttcatgtg gcttgtcg
//
LOCUS       DATCGC010001167         1599 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_249986, whole genome shotgun sequence.
ACCESSION   DATCGC010001167 DATCGC010000000
VERSION     DATCGC010001167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1599)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1599)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1599
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249986"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            217..1038
                     /locus_tag="VIJ87_11370"
     CDS             217..1038
                     /locus_tag="VIJ87_11370"
                     /inference="COORDINATES: protein motif:HMM:NF017088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042314 - bacteriochlorophyll binding
                     [Evidence IEA];
                     GO_process: GO:0019684 - photosynthesis, light reaction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PRC-barrel domain-containing protein"
                     /protein_id="HEY5445039.1"
                     /translation="MLRQIKELGTYRLHATDGDIGHLEQFYFDDRDWKIRFFVVDIGT
                     WLHGKKVLMSPSAIIGVDASTKTINAGFTKQQVQESDDVGMHKPEGLEQPHDYSLYLG
                     WPYYLGLNALNDPEKGGSSEPSFRQAYDEHLRSSKVVSRYHVMAVDGEFGQIEDGIVD
                     DQTWTIQYVVSTVGNWWSAKKVLLPTEWILWVNAVESNVYVSLTRNNIATAPAFDPEK
                     PLTQDLEIALHNHYWDYRLRSGSSRRSNASLPQLESEHPISFVSLLETLDRRKFR"
     gene            complement(1169..1244)
                     /locus_tag="VIJ87_11375"
     tRNA            complement(1169..1244)
                     /locus_tag="VIJ87_11375"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1209..1211),aa:Lys,seq:ctt)
     gene            complement(1411..>1599)
                     /locus_tag="VIJ87_11380"
     CDS             complement(1411..>1599)
                     /locus_tag="VIJ87_11380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445040.1"
                     /translation="TLNNLTPQVPCIFYTGDAYEIHRHEAMAAGAAAFVAKPDIDQLV
                     NTVHKVLSDHECASEASA"
BASE COUNT          403 a          379 c          422 g          395 t
ORIGIN      
        1 ctaatagctc tcttgatagg gttcgccgca aggtgtacag tttagttcac tgctcaataa
       61 cgagatgcag cgaggttatt gctggcatct tctaagtgga ttcacttacg ccgactgcga
      121 gttctccctc agtaatagcg acatttctcc ctcagttaca tcgatgatgt cagtttctgt
      181 gctcgaggtg ggcacggcat tttgggggtt gcagaaatgc tacggcaaat taaagagttg
      241 ggaacttata ggcttcacgc gacggacgga gacataggtc atctggagca attctatttc
      301 gatgatcggg attggaagat cagattcttc gtagtagaca ttggcacctg gctgcacggt
      361 aagaaggtac tcatgtcgcc ctccgcaatc atcggcgtgg acgcctctac caaaaccatt
      421 aacgcgggat tcaccaaaca acaggtccag gaaagcgatg acgttggcat gcataagcct
      481 gagggcctcg aacaacccca tgattactct ctctaccttg gttggcctta ctaccttgga
      541 ttgaatgctt tgaatgatcc tgaaaaaggt gggtcttcag agccctcatt ccggcaagca
      601 tacgacgagc atttacgaag ctcgaaagtg gtgagtcgct atcacgtcat ggccgtggac
      661 ggtgaatttg gtcagattga agacggcatt gtggatgatc agacatggac cattcaatac
      721 gttgtatcaa ccgtaggaaa ttggtggtca gcaaagaaag tactgttgcc tacggaatgg
      781 atcttatggg tcaatgcggt ggagtcgaat gtctacgtga gtctcacgcg gaacaatatt
      841 gctactgcgc ctgcgtttga tcctgagaaa ccgctgacgc aggatcttga gattgccctt
      901 cacaaccact actgggacta caggctgaga tcgggttcaa gtcgtcgctc aaacgcgtct
      961 ttgcctcagc ttgaatctga gcaccccatt tcctttgtta gcttgcttga gactttagac
     1021 agaaggaagt ttcgataggc ccagcggtaa aacgcaaacg atagatgcgt tggcgcacta
     1081 ggcgcactat tggcacacca aacagcaaaa gaaaagcggg cagtcaatca atggctgccc
     1141 gcaactgttt gttaacaact aactaaaatg gtgagccgag cagggctcga acctgcgacc
     1201 cgctgattaa gagtcagctg ctctaccaac tgagctatcg gcccttgtgt ttcacgaggg
     1261 tgaattatac ggtcgaagat tgaagtgtca agcgaccaaa aacattgccg attgcgtttg
     1321 gcacagactt cagtctgtga acatcgacta agcgcagtca gcgttgaaat gagtcttcac
     1381 agactgaagt ctgtgacacg tgctaacgtc tcacgcgcta gcctcggagg cgcattcatg
     1441 gtccgaaagt actttgtgaa cggtattcac aagttgatcg atgtcaggtt tggccacgaa
     1501 tgccgcggcc cccgccgcca tcgcttcgtg ccggtgaatt tcgtaggcgt cgccggtgta
     1561 gaagatgcac ggcacctgtg gagttagatt gttcaacgt
//
LOCUS       DATCGC010001168         1440 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_250003, whole genome shotgun sequence.
ACCESSION   DATCGC010001168 DATCGC010000000
VERSION     DATCGC010001168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1440)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1440)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1440
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250003"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(104..1174)
                     /locus_tag="VIJ87_11385"
     CDS             complement(104..1174)
                     /locus_tag="VIJ87_11385"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEY5445041.1"
                     /translation="MKRIAGLDQLRFILALCVLMPHCHLVPDFSGQPRGSLIELGFRA
                     VANNLINPVAAVIVFFVISGFCIHLPYRNQQSIPLVPYFTRRFVRILIPMAAAVLLAN
                     PLRLKLPLFSDSILWSLVCEEVYYILYPSLRRVAARVGWVKLFGASFVVALALALYSL
                     RTNDVTQGTYPAYGASLTWLLGLPCWLLGCILAERSESLNRTITSPQIWSWRFAIWFA
                     AWVCSVLKFHSQLGYPLTLNFFAILAFFWLQREIAFYQTRRALALLERNGAWSYSMYL
                     IHLHAQSVYVLIGIPALLFPIGWAVHLIFILLLCYVFYLVVEAPSHKLARYLSTMISN
                     RLSYEKITGAPVLSAVSDAGGD"
     gene            complement(1206..>1440)
                     /locus_tag="VIJ87_11390"
     CDS             complement(1206..>1440)
                     /locus_tag="VIJ87_11390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445042.1"
                     /translation="GGLMFCIGIAMIPQMIGIEAQMATYLGGILQQVLLTLIVFLPVI
                     RLSKNSLGQVLVEPAKSGIRSAQPLAVSSQRIS"
BASE COUNT          423 a          390 c          348 g          279 t
ORIGIN      
        1 ttcctacctc tccgttctct gcgtctcagc gccctctgcg ttaaagtttt tcccaacaca
       61 gagaacaccg agactaagag cacgcactga acactcgcta cgattagtcc ccacccgcat
      121 ctgacacagc gctcaacaca ggcgcgccgg tgatcttctc gtaactcagc ctgttgctaa
      181 tcatcgttga cagatatcga gcgagtttgt gcgatggcgc ctcgacgacc aaatagaaga
      241 cgtaacaaag gagcaggata aagatcaggt gcacagccca accaatcgga aacagcaacg
      301 ctggaatccc gataagaacg taaactgact gcgcgtggag atggatcaag tacatcgaat
      361 aactccaggc accattcctt tcgagcaagg ccagggctcg tctcgtttga tagaaagcaa
      421 tctcgcgctg gagccagaag aaagcgagaa tcgcaaagaa gttgagcgtg agtggatagc
      481 caagctgtga gtgaaacttc aacaccgaac acacccaggc agcgaaccaa atggcgaacc
      541 gccacgacca aatttgtggt gaagtgatcg ttcggttcaa cgactccgaa cgttccgcta
      601 gaatgcaccc tagtaaccaa cacggaagtc ctagcaacca ggttagcgaa gcgccgtaag
      661 ccggatacgt tccctgcgtc acgtcgtttg ttctcaggct atacaaggct agcgctaaag
      721 ccacaacgaa agacgctccg aacaacttca cccaaccaac tctcgcagcc acacgtcgca
      781 gcgacggata aagaatgtag tagacctctt cgcacaccag cgaccagaga atcgaatcgc
      841 taaagagtgg caacttcaat cggagcggat tcgcgagcaa caccgccgcc gccatcggaa
      901 tgagtattcg aacaaatcgt cgagtgaagt atggaactaa cggaatgctc tgctgattgc
      961 gatatggaag gtgaatgcag aatccactaa taacgaagaa gacaatcacc gccgccaccg
     1021 gattgattaa gttgttagca accgcgcgaa atcctagttc gatcaatgaa ccacgcggct
     1081 gcccactaaa gtcaggcacg agatgacagt gcggcatcaa cacacagaga gccaggataa
     1141 atctaagctg atcaagtccc gcgatgcgtt tcataaagcg ttgttattcg agacggcttg
     1201 actcatcaag agatgcgctg gctgctgacg gcaagtggtt gcgctgatcg gattcccgac
     1261 tttgcaggtt cgactagcac ctgacctaaa gagttcttac taaggcgaat caccggcaaa
     1321 aagacgatca gggtgagaag tacttgctga agtattcctc cgagataggt cgccatctgt
     1381 gcttcgatcc cgatcatttg cggaatcatg gctataccaa tacaaaacat cagaccacca
//
LOCUS       DATCGC010001169         2891 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_450944, whole genome shotgun sequence.
ACCESSION   DATCGC010001169 DATCGC010000000
VERSION     DATCGC010001169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2891)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2891)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2891
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_450944"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(48..124)
                     /locus_tag="VIJ87_11395"
     tRNA            complement(48..124)
                     /locus_tag="VIJ87_11395"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(88..90),aa:Met,seq:cat)
     gene            complement(295..1104)
                     /locus_tag="VIJ87_11400"
     CDS             complement(295..1104)
                     /locus_tag="VIJ87_11400"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY5445043.1"
                     /translation="MQPEFDTLKSKLRATWTAGDFSQIAKAYTKGAEEFVERLNLQPG
                     VKFLDVACGSGNLAIPAARLGAEVTGMDLAPEMVLQARQNAEREGLKARFDEGDAEAL
                     QYDDNAFDVVATMFGAMFAPRPDVTASELLRVCKPGGRIAMANWTPAGFIGQMFKMTA
                     GHVPPPAGMPSPVLWGVEATVRERFGSRVSSLAATAQNIFFRFPFSPVDVVEHFRTYY
                     GPTQKAFGALNENGQAALRGDLERLWTQNNRASDGTTEVESEYLEVIAIRA"
     gene            complement(1190..1642)
                     /locus_tag="VIJ87_11405"
     CDS             complement(1190..1642)
                     /locus_tag="VIJ87_11405"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY5445044.1"
                     /translation="MAVTPPRTNYASPFASMTGNHVAVRVPDLEAAKSWYVEKLDFRV
                     VHEWTFGDLQLAYVAAPTDDTFFLELIGGGSPIPERAYSDLSDSLKAAGYHHLCYMVE
                     SVDDTLAELKKRGVKIVNEAFELPEISRRLAFFADPWGNLLELAEVLR"
     gene            complement(1678..1947)
                     /locus_tag="VIJ87_11410"
     CDS             complement(1678..1947)
                     /locus_tag="VIJ87_11410"
                     /inference="COORDINATES: protein motif:HMM:NF014229.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UBP-type zinc finger domain-containing protein"
                     /protein_id="HEY5445045.1"
                     /translation="MSTEACVHIDAITEIKLPKKRVCEDCVKIGAKWVHLRTCQQCEA
                     TLCCDSSPNQHASKHARATGHPVIASAERGERWLYCYPDDAFAEY"
     gene            complement(2174..>2891)
                     /locus_tag="VIJ87_11415"
     CDS             complement(2174..>2891)
                     /locus_tag="VIJ87_11415"
                     /inference="COORDINATES: protein motif:HMM:NF025198.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4190 domain-containing protein"
                     /protein_id="HEY5445046.1"
                     /translation="SPETPHYSESHNAWHEPGEGEKKGLAIVSLVLGILSFLTFGLLG
                     IGAVAGIIVAVVAMKRVKEDPWTYGGRGLAIAGLVLNGTALVSAVPVGIIAAIAIPNL
                     MAARMAANEGAAIRSLRNISSAEATYLSMIGHYGTLDELASKGLVDTMLGRGTKSGYK
                     FSVEVKPSEYPNPEGFEVVCVPVTYQSTGRRSFYIDDSFVIRAADNHGGPSTKFDNPL
                     QSDYDFPRMSEREYKREVGY"
BASE COUNT          706 a          788 c          705 g          692 t
ORIGIN      
        1 aaacacaaaa ggcgagcttt gcgctcgccg taagttgttg atttatttgg tagcgggggg
       61 cgggatcgaa ccgccgacct tggggttatg aatcccacgc tctaaccatc tgagctaccc
      121 cgcctcgaga gtggcttatt ataaggggag agatgcattg gtcaagcgac ctcccctgac
      181 agtagttctc tcttagaaat cgctaacgaa gcacctaccc tggacacctg attcttgttt
      241 gtatagttag gatcacgacc gcccatgccg cgtgcttccc gcctaatatg aatactaagc
      301 acgaatcgcg attacttcga ggtactcaga ttcaacttca gtagtgccgt cgcttgcacg
      361 attgttctga gtccacaatc tttcaagatc tccgcgcagg gccgcttgac cgttttcatt
      421 caaggcgcca aatgcctttt gcgttgggcc atagtaagtt cggaaatgct ccacgacgtc
      481 aacgggtgaa aatgggaatc ggaagaagat gttttgagca gtggcagcca gcgacgacac
      541 gcgagaacca aagcgctctc gaactgttgc ctcaactccc caaagcaccg gtgacggcat
      601 acccgctggt ggcggaacat gaccagcagt cattttgaac atctgaccta tgaaaccagc
      661 gggtgtccaa ttcgccatcg cgattcgtcc tcctggtttg cagacgcgta acaactccga
      721 cgctgtgaca tcagggcgag gcgcaaacat tgctccgaac attgtcgcaa caacatcgaa
      781 agcgttgtcg tcgtactgga gggcttctgc gtctccctcg tcaaatcgag cctttagacc
      841 ttcacgctcc gcgttctgac gtgcctgcaa aaccatctcg ggagccaggt ccattcctgt
      901 gacttcggca ccgaggcgcg ccgctggaat tgcaagattg cctgagccgc acgcgacgtc
      961 aagaaacttc acaccgggtt gtagattcaa ccgttcgaca aattcttcgg cgccttttgt
     1021 gtaagctttg gcgatctggc tgaagtcgcc tgcggtccag gtagctctga gttttgattt
     1081 gagggtgtcg aattctggtt gcatcgttgc gtctcctacg attgattggt gacttgaata
     1141 cgcggtcgag cgataagcga ccgcgtggtg gtactgacga gtaagttgct catcgcagca
     1201 cttctgcaag ctccagcaag tttccccacg gatcggcaaa gaaggccaga cgacgactaa
     1261 tctcgggtag ctcaaaagcc tcattcacaa tcttcactcc tcgcttctta agctccgcaa
     1321 gcgtgtcatc gacactttca accatgtagc aaagatgatg ataacccgcc gccttaaggc
     1381 tgtccgacaa atctgaataa gcgcgttcag gaattggtga gccgccgccg attaattcca
     1441 ggaagaaggt gtcgtctgtg ggtgctgcga cataggccag ttgcagatcg ccaaaggtcc
     1501 actcgtgaac cacacggaaa tctaactttt caacatacca acttttcgcc gcttcgagat
     1561 caggcacccg cactgcaacg tgattgccag tcatcgaagc aaaaggactc gcatagtttg
     1621 ttcgtggagg tgtgacggcc atgtattctt ccttattctg aaacccaatc gacaagctta
     1681 atattccgca aatgcgtcgt caggataaca gtacaaccag cgctcaccac gttccgcaga
     1741 tgcaattaca ggatggcccg tcgctctcgc atgtttcgaa gcatgctggt taggggagct
     1801 atcacaacag agcgtggctt cacactgctg acacgtgcgc agatgtaccc acttcgcacc
     1861 aatctttaca caatcctcgc agactcgctt tttcggtaac ttgatttcgg tgattgcgtc
     1921 gatgtgaacg caagcttcag tggacatact ccattccctt cctgttgcta atacgagata
     1981 ggataaccac taaatgcggt tcggcaaaat gtcggagacg acgcaattct ctgaggtcca
     2041 taaaagaaca acgcgcggtg aggccgcgcg ttaattgaaa ctgtggttcc cgccgtagct
     2101 agttcgggca gacatcaccg ccctaccgga cagcaagtcg gtatgcgcaa cttcgaactt
     2161 tattcaaacg actctagtaa cccacttcgc gtttgtattc gcgctcgctc atgcgtggaa
     2221 aatcgtaatc tgactgtagt ggattatcga atttggtcga aggtccgcca tgattatcag
     2281 cagctctgat cacgaacgag tcatcaatat agaaggatcg gcggccggtg ctttgataag
     2341 tcacaggaac acaaacaact tcgaagcctt caggatttgg gtattcactt ggctttacct
     2401 caactgaaaa cttgtagcca ctcttcgttc ccctccccaa catcgtgtcg actagaccct
     2461 ttgacgctag ttcgtccaaa gttccatagt gaccaatcat gctcagatac gtagcttcag
     2521 cagatgaaat gttacgaagg gagcgaattg ccgcaccttc gttagcagcc atacgggcag
     2581 ccatcaaatt cgggatcgcg atcgccgcga taattccgac gggaaccgca gataccagag
     2641 cggtgccatt taaaaccaat cctgctatgg ctaacccgcg acctccatat gtccatggat
     2701 cctctttgac tcttttcatt gcgacaaccg caacgatgat gcctgcgacg gcgccaattc
     2761 cgagcaagcc aaacgtgaga aaactgagta tcccaaggac cagcgaaacg atagccaatc
     2821 ctttcttctc accttcgccc ggctcgtgcc aagcattatg actttctgag tagtggggag
     2881 tttctggaga g
//
LOCUS       DATCGC010001170         1212 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_250023, whole genome shotgun sequence.
ACCESSION   DATCGC010001170 DATCGC010000000
VERSION     DATCGC010001170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1212)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1212)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1212
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250023"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            128..1039
                     /locus_tag="VIJ87_11420"
     CDS             128..1039
                     /locus_tag="VIJ87_11420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445047.1"
                     /translation="MNHGYTYQSTLAASDAVHWRIEDIIGGEKRLDFSRPFMPEALAQ
                     VQSLSFLNDDEKRILNQIRGNTYLCIFGLVEEFILPFVIDQTRPHLHGDDYRARALLQ
                     FASEEAKHIQLFKQFREEFADGFGTECPVIGPPEAIASAILAHDPLGIALTTLHIEWM
                     VQNHYVDSVKDDQDLDPQFKSLLKHHWLEEVQHAKLDTMMVESMAAELNEEQILNGVE
                     EYLAIGGFIDGGLTQQVEFDMASLMSATDRYFTEAQKEEFRHVQRQANRWTYLGSGMT
                     HPKVLETLESLSPKARKRVETVSIAFC"
BASE COUNT          292 a          312 c          325 g          283 t
ORIGIN      
        1 ctcctacctc ctgctcctgc ctcctgcccc tttctttttc ccgccgtgat gcttttcact
       61 ctctttctac gcatgtctac gtagggcgga tttactaacc aattggaacc ttaggaggtg
      121 ttccaagatg aaccacggat atacatatca atcaacttta gccgcgtcag acgcagtgca
      181 ctggcgcatc gaagacatca tcggaggcga gaagcgcctc gacttttcac ggccgtttat
      241 gccggaggcg ctggcccagg tgcagtcgct ctcgtttctc aacgatgacg aaaagcggat
      301 cctgaatcag attcgcggaa acacgtacct ctgcatcttt ggactagtcg aggaatttat
      361 tcttcccttt gtcattgatc agacaagacc gcatcttcat ggcgatgact atcgtgctcg
      421 tgctctgctt cagttcgcca gtgaagaagc caagcacatc caactgttca agcaatttcg
      481 cgaggagttc gccgacgggt ttgggacgga gtgcccggtc atcgggccac ctgaagccat
      541 tgccagtgca atcctcgcac acgatcctct cggcattgcg ctaacgacgc tgcacattga
      601 atggatggtg cagaatcact acgttgatag cgtgaaggac gatcaggatc ttgacccgca
      661 gtttaagagt ttgctcaagc atcactggct tgaggaagtt cagcacgcaa agctcgacac
      721 aatgatggtc gagtcgatgg cagcggagct gaatgaagaa cagattctta acggcgttga
      781 agagtacctg gcgatcggcg gatttattga cggtggtcta actcaacagg tcgaattcga
      841 catggcgagt ttgatgagtg ccactgaccg atactttacc gaagcgcaga aggaagagtt
      901 ccggcacgtc caaaggcagg cgaaccgctg gacgtacctg ggtagtggca tgactcatcc
      961 gaaggtgctt gagaccctgg agagtttgag tccaaaggcc agaaagcgag tcgagactgt
     1021 ttcaatcgct ttctgctaag accggggagt cgctctcccc ggacaacgca accgcagaag
     1081 cccgcgtggg aagggcttct gcggaagggt tggtcatatt tcagattgaa gagttcagat
     1141 tgcagatttg aaaaaacgac gttgacgaaa ttgactagtc gacgaccgct gaccactctc
     1201 tgagtgaact cg
//
LOCUS       DATCGC010001171         1084 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_450971, whole genome shotgun sequence.
ACCESSION   DATCGC010001171 DATCGC010000000
VERSION     DATCGC010001171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1084
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_450971"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1084)
                     /locus_tag="VIJ87_11425"
     CDS             complement(<1..>1084)
                     /locus_tag="VIJ87_11425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445048.1"
                     /translation="PAVKQRQAGIPQMQLRQWYADAFVQDSFQVTRNTTIQLGVRYEF
                     MSPLRDIRYANTNLTFVNGVPSVFIGGQQGFPEGLTYANKLNFAPRAGISHNMHKHGI
                     VLHAAFGIFFTPVDMNTWCNQRHNVPYVFPETQQSDNFIPAAGIVATHFNFAPAVLGV
                     TTVSFAAVEADPPPQYIQQWSASVEKSLGQEMTLELGYLGSHGVHLQRSHLINNAPAG
                     PGAIGPRRPFKTLSFLPGMVLPDNITIANTTFPVSGINLLENSAQSWYEAGYVNVRRR
                     LAKGWTFLANYTYSKNLSDAPDFRSPMFESAAPQDNSRLFLEKALACDVRHRFSLSTV
                     YDLPSLSRSGFVGAVSKNWRLSALYQA"
BASE COUNT          271 a          278 c          290 g          245 t
ORIGIN      
        1 gcttgataga gagctgagag ccgccaattc ttcgacactg cacctacgaa ccccgatcga
       61 ctcagcgacg gaagatcata aacagtgctc agcgagaatc gatgtcggac atcgcaagca
      121 agcgctttct ctaaaaacaa cctcgaattg tcttgcggtg ccgcggattc aaacatcggt
      181 gagcgaaagt caggcgcgtc gctaagattc tttgaatatg tgtagttggc gagaaaggtc
      241 caacccttcg caagacgccg acgcacattc acgtaaccag cctcatacca actttgcgcg
      301 gagttctcga gcaagttgat cccgctaacc ggaaacgttg tgttggcaat tgtgatgttg
      361 tccggcaaaa ccatacccgg cagaaagctt aacgtcttga atggtcgacg tggaccaatc
      421 gcgccagggc cggccggcgc gttgttgatt agatgactgc gctgcaaatg aactccgtgc
      481 gatcccaggt agccaagttc caacgtcatc tcctgaccca aactcttctc gaccgacgca
      541 ctccactgtt gaatgtattg cggtggcgga tcggcttcaa cagcagcaaa gctcaccgtg
      601 gtcacgccca aaactgcagg tgcgaagttg aagtgagttg ccacaatgcc agccgctggg
      661 atgaagttat cgctctgttg tgtctcggga aacacgtaag gaacattgtg acgttgattg
      721 caccaggtgt tcatgtctac cggcgtaaag aagatgccaa atgcggcatg taacacaatt
      781 ccatgcttgt gcatattgtg ggagatgcct gcgcgtggtg cgaagttaag tttgttcgcg
      841 tatgtcagac cttcgggaaa gccttgctgt ccgccgatga aaacggaagg cacgccattt
      901 acgaaagtaa ggttcgtgtt ggcgtaacga atgtcgcgca acggactcat gaattcatag
      961 cgcacgccga gttgaatcgt ggtattgcgc gtgacctgaa aactgtcttg cacaaaagca
     1021 tccgcgtacc actgacgcag ctgcatctga ggaatgccag cctgtcgttg tttcactgca
     1081 ggta
//
LOCUS       DATCGC010001172         1302 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_115897, whole genome shotgun sequence.
ACCESSION   DATCGC010001172 DATCGC010000000
VERSION     DATCGC010001172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1302)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1302)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1302
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_115897"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..582
                     /locus_tag="VIJ87_11430"
     CDS             <1..582
                     /locus_tag="VIJ87_11430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445049.1"
                     /translation="WLDFVRRRGPGLKERDAELMLLHMRDFLATEPGPFCANFTLQRT
                     EFLERFHNEVELSRVTQLDRQPAEEHELLRGGATVAELREKQLLRILARREAERMGWQ
                     LTEEEVQEKAELFRSHHGLESPANMANWMESEGLSETMFWQFINDACLIDRLRRLYGH
                     AIESGLPDQLRIATASLYGEREEELVEEAASGD"
     gene            complement(579..>1302)
                     /locus_tag="VIJ87_11435"
     CDS             complement(579..>1302)
                     /locus_tag="VIJ87_11435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445050.1"
                     /translation="FLRRLDAALEEFGRPRQRASLSLSPSEYFVRQIRVTPFPFEDIE
                     WLIHETGPELYMFGTDYPHDEGGETPLSMFDEALESFPNNVRDAIYWRNFEDLMANGL
                     PETLRVQAVFEDSFEDETDEVEVLRLTGESLAVHRKKVLLRLLVKEAAERYGLIASDD
                     EVEAAVDEFRASCDLYDVEETQEWLGNAKITYESLCRVMRDSVLADKLYLQLQDEVTR
                     NLPEQIGVATARLRRKSKTVSH"
BASE COUNT          323 a          334 c          340 g          305 t
ORIGIN      
        1 tggctcgact ttgtcaggcg acgtgggcca ggtctaaaag aacgcgacgc cgagttaatg
       61 ctactgcaca tgcgtgattt tctggcgaca gagcccgggc cattctgtgc aaacttcacg
      121 ctccagcgca ctgagtttct cgagcgcttt cataacgaag ttgaattatc ccgcgtgact
      181 caactcgacc ggcaaccagc cgaggagcat gagttgctac gcggcggcgc gaccgtagcc
      241 gagctacgcg agaaacaact gttacgtatt ctggcaaggc gcgaggcgga gagaatggga
      301 tggcaactca ccgaagaaga ggtgcaggag aaagccgagc tgttccgttc acatcacggt
      361 ctcgagtcac ccgctaatat ggccaactgg atggaatccg aaggactgag tgagacgatg
      421 ttctggcagt tcataaatga tgcctgtctg attgatcgtc tgcgaaggct ttacggtcac
      481 gctattgaga gtggtctgcc cgaccaactg cgaatcgcaa cggcaagctt gtacggagag
      541 cgtgaagaag aattggtgga agaggctgcc tcaggtgatt agtgggatac cgttttagac
      601 ttccgtctca gtcgagcagt tgctacaccg atctgctccg gcaaattcct agttacttcg
      661 tcctgaagtt gaagataaag tttgtcagcc aatacgctat cgcgcatcac gcgacagagt
      721 gattcatacg tgatcttcgc attacccaac cattcctgtg tttcttcaac atcataaaga
      781 tcgcagctag cgcgaaattc atcgaccgct gcttcaactt catcatctga agcgatcagt
      841 ccgtaccgtt ctgctgcctc ttttacgagt agccgtaaca aaactttttt tcgatgcaca
      901 gccaatgatt caccagtgag acggagcact tcgacttcgt cagtttcgtc ttcgaaagag
      961 tcttcaaaaa cagcttgtac gcgaagcgtc tcgggtaaac cgttggccat tagatcttcg
     1021 aagttgcgcc agtagatcgc gtcacgcacg ttattcggaa aggattccag tgcctcatca
     1081 aacattgaga gtggagtctc gcccccttcg tcatgtggat aatccgttcc gaacatgtag
     1141 agctctgggc cagtttcatg gattagccat tcaatgtcct caaacgggaa tggagtaaca
     1201 cgaatctggc gcacgaagta ttcgctggga ctcaatgaaa gcgaagcccg ttgacggggc
     1261 cgtccaaact cttcaagcgc cgcatcgagt cgccgcagaa ag
//
LOCUS       DATCGC010001173         1926 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_215700, whole genome shotgun sequence.
ACCESSION   DATCGC010001173 DATCGC010000000
VERSION     DATCGC010001173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1926)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1926)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1926
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_215700"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..583)
                     /locus_tag="VIJ87_11440"
     CDS             complement(<1..583)
                     /locus_tag="VIJ87_11440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="PPC domain-containing protein"
                     /protein_id="HEY5445051.1"
                     /translation="MNPQGLRAKPALLPRCLERAEPLGELKHRKFLNKCFVLLFLVQL
                     IHSSNAQTPSGKETRSEKDKTGTSILLEVNKPIENTIIGGNTQSYGISASAGALISVS
                     LEQQGIDIAETVLKPDGSLLADFDSELLPRNVDHVTFVADTAGVFTLQVRAKIRDAAG
                     IYQLLLVRSQPATEQDRSLDQTHRLGTQSALAFR"
     gene            complement(583..1593)
                     /locus_tag="VIJ87_11445"
     CDS             complement(583..1593)
                     /locus_tag="VIJ87_11445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445052.1"
                     /translation="MKENGDDFRVITDYLLKALPEEELEQLDELSVTDDEFVAKLRMV
                     ENELIDSYVRGNLTGKTLEQFKAAYLNGADGQQKVAFAHALQAFGKKHPLPLLEKVQS
                     ENSINPQPEMTAHRWFELWEVFRTPRLAQFGFAMVALVLLIVGGLLAIENIRHRRQLS
                     QERVSNSAAAQQTHEAQREAERQPESNSTREKELASNRNANEGGQQSESKTPVGPPSI
                     SSGARRNVSISSFVLTPQMRGPGEIKIVTLPAHTSVVAIKVQLEPNQYSSYQVVLLNE
                     SNRSLWRSNTINMREKTDYKNLSISFPAALLKQGTHVLQVYGIDRGQSELLGDYPFRV
                     MK"
     gene            complement(1647..>1926)
                     /locus_tag="VIJ87_11450"
     CDS             complement(1647..>1926)
                     /locus_tag="VIJ87_11450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445053.1"
                     /translation="ELRNPQPAVVIAGNDENALKEHMLGCLEKCLDALEPLNREIIVR
                     YYLGEERSKIENRHALAESLGLTTNALAIRACRIRDKLESCVENCIDE"
BASE COUNT          436 a          470 c          479 g          541 t
ORIGIN      
        1 agcggaatgc taatgctgat tgcgttccta atcggtgagt ttgatccagt gatcgatcct
       61 gctccgttgc tggttgggat ctaaccagga gaagttgata gattccagcg gcgtctctta
      121 tcttcgcccg tacttggagc gtgaatacac cggccgtatc ggcaacgaag gttacatggt
      181 cgacgtttcg tggcaacaac tcggagtcga agtcagcaag taacgagccg tcaggcttta
      241 acacggtctc ggcaatatca atgccctgtt gctcaagcga aacacttata agcgcaccag
      301 ccgatgcact gatgccgtag ctctgagtgt ttccaccgat aatcgtgttt tcaatcggct
      361 tgtttacttc gagaagaatg cttgtacccg ttttgtcctt ctctgagcgg gtttccttgc
      421 cagaaggtgt ctgtgcattt gaagaatgga tcagctggac caaaaaaagt agaacaaaac
      481 atttgtttag gaacttccga tgtttgagtt caccgagcgg ttccgctcgt tctaaacaac
      541 gtggtaagag tgcaggttta gctcttagtc cttgcggatt cattacttca taaccctaaa
      601 gggatagtca cctaaaagtt ccgactggcc cctgtctatg ccgtagactt gcaggacatg
      661 agtcccttgc ttaagcagcg ctgccggaaa actaatactg agattcttat aatcagtctt
      721 ttccctcatg ttgattgtat tgctgcgcca tagcgatcgg tttgattcgt tcaggaggac
      781 cacttgatat gaggaatact gattgggctc cagttgaact ttaatcgcaa caacagaggt
      841 gtgggccggc agagtaacta ttttgatctc gcctggccca cgcatttggg gcgtgagtac
      901 gaaagacgaa atgctgacgt tacgacgtgc acccgatgat atggaaggcg gtccaaccgg
      961 agtcttgctc tctgactgtt gccctccttc atttgcattg cgattggaag caagctcttt
     1021 ttctctagtt gaattgcttt cgggttggcg ttcagcttct cgttgcgctt cgtgggtttg
     1081 ttgcgcggct gctgaattgc tgacccgttc ttgagagagt tgtcgtctat gccggatgtt
     1141 ctcaattgcc agcaagccac cgacaatcaa taaaaccaga gcgaccatcg cgaagccgaa
     1201 ctgggcgagg cgcggggtcc tgaaaacttc ccagagttca aaccacctgt gagctgtcat
     1261 ttctggctgt gggttgattg agttttcact ttgtaccttt tcaaggagcg gtagaggatg
     1321 cttcttccca aaggcttgca gggcgtgggc gaaagctact ttttgttgtc cgtcggcacc
     1381 gttgaggtaa gcggctttga actgctccag tgttttcccc gtcaagttcc cgcgcacgta
     1441 ggaatcaatc aactcatttt cgaccatgcg taacttggca acaaattcgt catccgtcac
     1501 acttagctca tccaactgct ccaactcttc ttcaggcaga gctttgagta agtagtcagt
     1561 aatgactcta aaatcgtcgc cgttttcctt cataccaaga agatcagatc cctccaacta
     1621 gataagacgg ttagacataa aacatttcat tcgtcgatac agttttcgac gcaactctca
     1681 agcttgtcgc ggatgcggca agctcgtatt gccagtgcat tggtcgttaa tcccaaactc
     1741 tcggcgagcg catgtcgatt ttcaatcttc gatcgttctt ctccgaggta gtaacgcacg
     1801 atgatctcgc ggttcaaggg ttccagtgcg tccaggcatt tctcaagaca gccaagcatg
     1861 tgctctttga gagcgttttc atcattgcca gcgatcacta cggcgggctg tgggtttcgc
     1921 agttcg
//
LOCUS       DATCGC010001174         1161 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_250091, whole genome shotgun sequence.
ACCESSION   DATCGC010001174 DATCGC010000000
VERSION     DATCGC010001174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1161)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1161)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1161
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250091"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(25..>1161)
                     /locus_tag="VIJ87_11455"
     CDS             complement(25..>1161)
                     /locus_tag="VIJ87_11455"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HEY5445054.1"
                     /translation="RKGTTEFTNAKEFAKCMKAIRAHLKGAGVKKIVELHGYASEEGT
                     AKFNQELSDKRAKIVKLLLGKGGIDTSQLKLSVHGEDNSYRTHEENRRVEVILPAPQV
                     SGSNDQPGPPPGETLRKLYEMAPEPGPEKEKDPVEIEIGKEMRVNVPDSPAWAKIVPD
                     YTIFPQGEAFVLSHFVKVKVTGLSEKRLGFVKIEILEGRNKGDTAEIDRANLGPAAAS
                     SGPAHTRFTLSSNEFWYGGKGPVKAISHSAKLLPTGRYDVQIPDYSHDKGDKYGDYAT
                     TWFLVGDSSDKYLHPGFASLGCVTVEIKMGDTTTWPAIWKHLISARKDDKYVGDIEIN
                     AGGLSVCERECNEEFERCLKTSSTGGMECMPVKQACYAKCAQQP"
BASE COUNT          230 a          333 c          272 g          326 t
ORIGIN      
        1 gtccactcct tgcctggcgc agacctacgg ttgctgtgcg catttggcat aacaggcttg
       61 cttcactggc atacactcca ttcctcccgt agaactcgtc ttcaggcaac gttcaaactc
      121 ttcgttgcat tccctctcgc aaaccgataa gccaccagca ttgatctcga tatctccgac
      181 atatttgtcg tctttccggg cagagatcag gtgtttccaa atagccggcc aggtcgtggt
      241 atctcccatt ttgatttcca ctgtcacgca accgagactg gcaaagcctg gatgcagata
      301 cttatcactg ctgtctccga ccaagaacca ggtcgtagcg tagtcaccat acttatcgcc
      361 cttatcgtgt gagtagtctg ggatctgaac atcgtagcga cccgtgggaa gcaacttagc
      421 actgtgggag attgctttta cgggaccttt tcctccatac cagaattcat tcgagctaag
      481 agtgaatcgg gtatgagccg gaccgctact cgccgcggct ggtccaaggt tcgcccggtc
      541 gatttcggct gtgtctccct tgttgcgtcc ttccagaatc tcaattttca cgaatccaag
      601 gcgcttttca ctcagtcccg ttactttaac tttgacaaag tgggataaca caaatgcctc
      661 accttgggga aagatcgtat aatccggtac tatcttggcc catgctggag agtctggcac
      721 gttcactcgc atttccttcc caatctcgat ttcgacaggg tctttctctt tttccgggcc
      781 tggctccggc gccatctcgt acaattttcg aagtgtttcc cctggaggtg gacctggctg
      841 gtcattagaa ccactgacct gaggtgccgg caggattacc tctacccgcc ggttttcctc
      901 gtgcgtgcga tagctgttgt cctcgccgtg gacggagagt ttcagctgcg aggtgtcgat
      961 accgcccttc cccaacaaca acttgacgat ctttgctcgc ttgtcggaaa gctcttgatt
     1021 aaatttcgct gtgccctcct cactcgcata gccatgaagc tcgacgatct tcttaacgcc
     1081 tgctcccttg agatgggcgc gaatggcttt catgcattta gcgaactctt tggcattggt
     1141 aaattccgta gtgcctttgc g
//
LOCUS       DATCGC010001175         1261 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_349601, whole genome shotgun sequence.
ACCESSION   DATCGC010001175 DATCGC010000000
VERSION     DATCGC010001175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1261)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1261)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1261
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_349601"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1261
                     /locus_tag="VIJ87_11460"
     CDS             <1..>1261
                     /locus_tag="VIJ87_11460"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF5939 domain-containing protein"
                     /protein_id="HEY5445055.1"
                     /translation="RARIDALGERLLRDGDQSDEVRSIVERLIEFIATADDFAVARIR
                     PYQLADSWKAPRRLVLETCLRATRVGLLDLRWDILCPMCRGAQDAGSSLKEIPTDVHC
                     GTCKIDFTANFDRFVELTFKPNAGVRLVEIQDFCIGSPQRTPHVVVQQLLPAGSERSL
                     DLPLGEGNYRLRVLELPGSQAVNVSPQGERSATITIVPSGWTDTVLNVSERTSFTLKN
                     ETDVEHLLILERIAWGDQAATAAEVTALQVFRDLFSTEALRPGEQISVGTLTVLFTDL
                     RQSTRLYREIGDATAFGRVMNHFDVLKKFIAARDGAIVKTIGDAVMAVFRSPVNALVA
                     MLDAQHALANPQDGEMPFQLKAGLHSGPCIAVTLNDRLDYFGSTVNLAARLEGLSCGT
                     DVIISRAIFDDAKVRELLNSEEYEASSF"
BASE COUNT          277 a          297 c          368 g          319 t
ORIGIN      
        1 ccgagctcgc attgatgcgc tgggagaacg actgctaaga gacggcgatc aatcggatga
       61 agtcagatca atagtggaac ggcttattga gttcatcgcc actgccgatg attttgctgt
      121 tgcgcgaatc cgtccgtacc agttggccga cagttggaag gcgccgcggc ggcttgttct
      181 cgaaacttgt ttacgcgcga cgcgagttgg attgcttgat ttacgttggg acattctttg
      241 tcccatgtgc agaggagccc aggatgctgg ttcgtcgttg aaagagattc ccacggacgt
      301 tcattgcggc acgtgcaaga ttgatttcac tgccaacttc gatcgctttg ttgagttgac
      361 ctttaagcca aacgcaggag tgcgactggt tgagattcag gacttctgca ttggtagtcc
      421 gcaacgaacg ccgcacgtgg ttgtgcagca gctcttgcca gccggcagcg agcgttcgct
      481 ggatttaccg ttaggcgaag ggaactatcg acttcgtgtc ctcgagttgc caggttcgca
      541 ggccgtaaat gtgtcacccc agggtgagcg ttcggccacc atcactattg ttccaagcgg
      601 ttggacagac actgtattga acgtctctga acgcacttcg tttacgctga agaacgaaac
      661 tgatgtcgag catttgttga tactcgaacg aatagcctgg ggtgatcagg cggcaacagc
      721 ggctgaagta actgcgttac aagtgtttcg tgatctgttt tcaacggagg cgcttcgacc
      781 aggcgaacag atttctgttg gcactctgac tgtacttttc acggacttac gacagtcgac
      841 gcggctttac cgggaaattg gcgacgccac ggcgtttggt cgagtgatga accacttcga
      901 cgtgttgaag aagttcattg cggctcgcga tggggcgatt gtcaaaacaa ttggagatgc
      961 tgtcatggca gtcttccgaa gtccggtgaa tgcgttggtc gcgatgctgg atgctcagca
     1021 cgcgttggca aacccgcagg atggagaaat gccgtttcaa ctgaaggcgg gtttacactc
     1081 cggaccttgc atcgctgtaa cactcaacga tcggctcgac tacttcgggt caacagtgaa
     1141 tctggcagcg cgcctggagg gactgtcttg tggaactgac gtgataatct cacgcgcgat
     1201 ttttgacgat gcgaaagttc gtgagctttt gaattcagaa gaatatgaag cgagttcatt
     1261 t
//
LOCUS       DATCGC010001176         1967 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_215741, whole genome shotgun sequence.
ACCESSION   DATCGC010001176 DATCGC010000000
VERSION     DATCGC010001176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1967)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1967)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1967
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_215741"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1856)
                     /locus_tag="VIJ87_11465"
     rRNA            complement(<1..1856)
                     /locus_tag="VIJ87_11465"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          393 a          597 c          436 g          541 t
ORIGIN      
        1 accggggctt cgattcaagg cttgcacctc tcctcttaac cttccggcac cgggcaggcg
       61 tcagacccta tacgtcatct tgcgatttcg cagagccctg tgtttttgtt aaacagttgc
      121 caccccctgg tctgtgcccc cactgcccgc ttgcgcgagc aatgggcctc cttatcccga
      181 agttacggag gtaaattgcc gagttccttc aacatagttc tctcaagcgc cttggtatac
      241 tctaccagtc cacctgtgtc ggtttggggt acggtctaat gtggaggcta tttcctggaa
      301 cctcttcgag gcccgaccaa tccaataagg tcagacaaca tacgagattc gtcaccatcc
      361 actggctgca gaatattcac tgcattccca tcgactacgc ctttcggcct cgccttaggg
      421 accggctaac cctgcgaaga ttaactttac gcaggaaccc ttggactttc ggcgacactg
      481 tctttcacag tgtttgtcgt tactcatgcc agcattcgca cttctgatac ctccaggcgc
      541 tctcacgagt cgcccttcgc aggcttacag aacgctccgc taccgcgtga cccttgcgga
      601 tcacacccta agcttcggct cgtggcttga gccccgttac atcttcggcg cagaaaccct
      661 tatttagacc agtgagctgt tacgctttct ttaaaggatg gctgcttcta agccaacctc
      721 ctggttgttt tgggatttcc acatcctttc ccacttagcc acgaattagg ggccttagct
      781 gtaggtccgg gttgtttccc tctccacgac ggacgttagc acccgccgtg tgactcccgc
      841 atattgcttt cgggtattcg gagtttggtt gggtttggta agacggtaag tccccctagc
      901 ccatccagtg ctctaccccc cgaagcattc atgcgaggcg atacctaaat atctttcgcg
      961 gagaaccagc tatttcccag tttgattggc ctttcacccc taaccacaag tcatcggagt
     1021 ctttttcaac agacacccgt tcggtcctcc agtgagtgtt acctcacctt caacctgctc
     1081 atggctagat cactaggttt cgggtctaat acaacgaact tgacgcccta ttcagactcg
     1141 ctttcgctgc gcatacgcct atcggcttaa gcttgctcgt taaattaagt cgctggccca
     1201 taatacaaaa ggtacgacgt cacccagaac gtatcttggg ctccgtctgt ttgtaggtgt
     1261 ccggtttcag gtctatttca ctcccctcgt cggggtgctt ttcacctttc cctcacggta
     1321 ctggttcact atcggtcgct gaggagtact taggcttgga gggtggtccc cccgtgttca
     1381 gacagaattt cacgtgttcc gccttactca aggatacatc atcgcattac ccgtacgggg
     1441 ctatcaccct ctgaggccct gctttcctga caggttccgg ttgtctttga tgtatcactg
     1501 gcctggtccg cgttcgctcg ccactactaa cggagtctct gttgatgtcc tttcctccag
     1561 gtacttagat gtttcagttc cctgggttcg cttaaaacct cctattttat tcggaagtct
     1621 cataccttca cttgataact ggaaatccaa aacctcgcgg cttggtctca aacattgctg
     1681 ttcaaacccc aagatacgag atcttggagt tccagctatc gaaggtgggt ttccccattc
     1741 ggaaatccgt ggatcaaagc ttcttcgcag ctccccacgg cttatcgcag cgtagcacgt
     1801 ccttcttcgc ctctcagcgc caaggcatcc accgaacacc cttaaggcac ttgattgctc
     1861 tcattatcaa tgtccacaca ctcggcagaa tgttgtccgc acaattgcct tgaggtcgaa
     1921 acctcaaaac gcgccccctc gatgaaggct atgcacggcc ggacaat
//
LOCUS       DATCGC010001177         1863 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_283445, whole genome shotgun sequence.
ACCESSION   DATCGC010001177 DATCGC010000000
VERSION     DATCGC010001177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1863)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1863)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1863
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283445"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(157..1689)
                     /locus_tag="VIJ87_11470"
     CDS             complement(157..1689)
                     /locus_tag="VIJ87_11470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010925670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1182 family transposase"
                     /protein_id="HEY5445056.1"
                     /translation="MKRKVVFKRYEQNQPMLLPPSYEDLVPENHPVRIVNEIIDRIDI
                     GELEKTYKGGGTSSYHPRMLLKVVVYAYLRNMYSSRKIEDALKENVHFMWLSGGAKPD
                     HNTINDFRSKRLRDHLKKIFNQVVILLCEEGAISLREIVLDGTKIEANANRYTFVWGR
                     AIKTSRERIERQLRDLWKYVEEVYQDEEQRPNTPEFEAIDADAVSRTIDQINEALKEK
                     DIDPKVRQKLTYAKKNWPEKLKEYDEREKQLAGRSSLSKTDPDATFMRMKEDHMLNGQ
                     LKPGYNVQASTEKQYIVDYTLGQTTTDTNLMKGHLDDFIASYGLAPENLTADAGYGSE
                     ENYLYLEELGITAFVKYNYFDKEQKETKSPRNPFHPDNLHYNEKTDTYTCPIGQQMKY
                     IGDKITRRPSGYLQTHRRYQAQNCTGCPLRGPCHKARGDRIIERSSHLVRCKQHVREL
                     LNSEEGIEKRKQRWQVEAVFANIKQNKGFRRFNLRGIDKTTTEFGLIALAHNIQKFST
                     NH"
BASE COUNT          371 a          478 c          445 g          569 t
ORIGIN      
        1 aacaataatg cggaaagaaa taaagctttc atcggggaat gaaacgctta aacaacacta
       61 ttttccatcg tgtacagggt aggcaaatca agaagctgtc tggaaagtgt ttcaggcagc
      121 ttcttttatt tgatttcggc agagccctta aggccgttag tggttggtac tgaacttttg
      181 gatattgtga gcgagagcga tgaggccgaa ctcggtagtg gttttatcga ttcctcggag
      241 attgaacctt ctgaagccct tattttgttt gatatttgca aacactgctt cgacctgcca
      301 tctctgtttt cttttctcga tcccttcttc gctgttaagt agctctctga catgttgttt
      361 gcatcggacg aggtgtgagg agcgttcgat aatgcggtca ccccgggctt tatggcatgg
      421 gccgcgcaag gggcagcccg tgcagttttg tgcctggtat cgccggtgag tttgcagata
      481 gccgctcggt cgccgggtga tcttatcacc tatatacttc atctgctgac cgatcgggca
      541 ggtataggtg tcggtctttt cgttgtaatg cagattgtcg ggatgaaatg gatttcgagg
      601 ggacttcgtt tctttctgct ctttatcaaa gtagttgtat ttgacgaatg ccgtgattcc
      661 gagctcttca agatacagat agttctcttc gctgccgtaa ccggcgtcgg ctgttaagtt
      721 ctcaggggca aggccgtacg aggcgatgaa gtcgtcgagg tggcccttca tcagattggt
      781 gtccgttgtc gtctgtccga gcgtgtaatc gacgatgtac tgcttttcgg tagaggcctg
      841 cacgttgtag cccggcttta gctgaccatt gagcatgtga tcctccttca ttctcatgaa
      901 ggttgcgtcc gggtctgttt ttgaaaggct gctgcggccg gcaagctgct tctcccgctc
      961 atcatactct ttgagtttct cgggccagtt cttctttgcg tatgtcagct tttgacggac
     1021 ttttggatcg atgtcttttt cctttagtgc ttcatttatc tgatcaatgg tccggctgac
     1081 ggcatcggcg tctattgcct caaactcagg cgtatttggc cgttgctcct cgtcctgata
     1141 gacctcctct acatatttcc agagatctct cagctgccgc tcgatccgct cacgactcgt
     1201 ctttattgct cggccccaca cgaacgtgta tcgattcgca ttggcctcta tctttgtccc
     1261 atccagcacg atctctctca atgagatcgc tccctcttca cataaaagta tcaccacctg
     1321 gttgaagatc ttcttcaggt ggtcacgcaa tcgtttgctt cgaaagtcgt tgatcgtgtt
     1381 gtggtcaggc tttgctccgc ccgagagcca catgaagtga acattttcct ttagagcatc
     1441 ttcgatcttc cgtgacgagt acatgttccg aagatacgca tataccacca ccttcaagag
     1501 catcctcggg tgatagcttg acgtgccccc gcccttgtac gtcttctcca actcgccgat
     1561 gtctatccga tctatgatct cgttcactat ccgcaccgga tgattctcag gcaccagatc
     1621 ttcatagctc ggcggcagca gcatcggctg attctgctca tacctcttga acaccacctt
     1681 cctcttcatg ttcaatagtt taaaatgtgt tgcgcccttc atcctagtac acacgcgcaa
     1741 aaaagaggcc gccttttcag acagcctctt atattatggc actttagatc caggtgtctc
     1801 acgtccggat cggaatatgt catccactgg atccgggtgt ctcacgtccg tatccaacgt
     1861 ata
//
LOCUS       DATCGC010001178         2688 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_483732, whole genome shotgun sequence.
ACCESSION   DATCGC010001178 DATCGC010000000
VERSION     DATCGC010001178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2688)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2688)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2688
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_483732"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..467)
                     /locus_tag="VIJ87_11475"
     CDS             complement(<1..467)
                     /locus_tag="VIJ87_11475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445057.1"
                     /translation="MDSSPANIQSELVRRQKAAAITILGLVVAVILLSLLAFLSRNHL
                     SPQDNRPLDMGVRIMILILGLGSIVWRRTKFQGMRLQDIGALQGPTGLLKTLERTTLQ
                     LALLAAAIAVIGFVATLLMGNEFYTYTAAAISFVVLLYSYPTRSSWVRTVSRFS"
     gene            complement(625..2175)
                     /gene="bamD"
                     /locus_tag="VIJ87_11480"
     CDS             complement(625..2175)
                     /gene="bamD"
                     /locus_tag="VIJ87_11480"
                     /inference="COORDINATES: protein motif:HMM:TIGR03302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0065003 - protein-containing complex
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HEY5445058.1"
                     /translation="MKCRLLSLLVSCVLLLGLTQAAVAQRTGGQTEASLAQRLEVMTS
                     KLDLMRRSLTSAISSMSPAAKSGDKTKPNADDPVVRLKGLEKDVSSVQSEVSDLKAKN
                     DRAEKFDTTAIERLETTVAELGPRVDQALQQTASARGTAASSTSSSSKKKKKGGIFGI
                     FKGSGDDKYAELTGAALAGRDRTLFEEGAKEVRKGHHDTGRLLFATIINTYPDSAFLP
                     LAKLAIADSFFLEGTSSSLIQAAQGYQDWLTFFPTDPLADDAMLKVAEAEMRQMGLSD
                     RDISHARKAEQRLKALLQQFPKTSLRPVVEDRLREVQENLAMHNLAIARFYGGKVIQG
                     KGGLKGAQSRLKEIVDKYPCFSLNDEVLFRLASTYQTEEEPDEAAKYYQQLIQGFPDS
                     EFNEKAREQLNIIGAPIPEKGTPNTCSKRQTVTFMGNLMQQVSGKADVTTDKDGVLIS
                     KDGKEGTDLIDEAIKYNGQLPEKLTPDAPTQRGTRPATVPAKAPANSNGGNSVAPAST
                     PTPAVIKP"
     gene            complement(2283..>2688)
                     /locus_tag="VIJ87_11485"
     CDS             complement(2283..>2688)
                     /locus_tag="VIJ87_11485"
                     /inference="COORDINATES: protein motif:HMM:NF013030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEY5445059.1"
                     /translation="SVHVEADAHLHRTLMSIKSAGAQAGVVLNPATPVVAVEEALQFA
                     DYVLVMSVNPGFGGQKFIPQAIDKVRRLRQTINEKQLNVRIEIDGGIDKSNIETVVGA
                     GAEILVAGSAIFGSSDAEKAVKELKNATVQWV"
BASE COUNT          648 a          710 c          623 g          707 t
ORIGIN      
        1 gaaaagcggg agaccgttct tacccaagag gatcttgtcg gataggaata aagaaggaca
       61 acaaacgaaa ttgccgctgc agtgtaggtg taaaactcgt tccccattag tagcgtcgcg
      121 acgaagccaa tcactgcaat ggcagccgcg agaagtgcca actgaagagt agttctttca
      181 agcgttttta ataagccggt agggccctgg agagcgccaa tgtcctgcaa tctcatgccc
      241 tgaaacttcg tgcggcgcca gactatcgaa cccaaaccca aaatcaggat catgattctc
      301 acgcccatgt ctagcggtct gttgtcttgt ggactcaaat gattcctgct cagaaaagcc
      361 agcaacgaaa gaagaatgac cgcgactaca agtccgagaa ttgttatggc cgccgccttc
      421 tgtcggcgta ctaactcaga ttggatattt gcaggtgacg aatccaaggg tccagttcca
      481 agctaaatgg aagtcaaaaa tgattatgct gaatcttcgg tctaaaaata ccagtcttgt
      541 tgcgaaaggg aaatgccctc aaaaaaagaa cggcccggaa tacttctatt ccgggccgat
      601 tctttttgat tggactttga aagtctaagg tttgatgact gcgggagtcg gagttgacgc
      661 cggcgctacg gaattgcctc cgtttgagtt agctggcgct tttgccggca cagtcgccgg
      721 tcgcgtgccg cgttgagtgg gcgcatcagg cgttagcttt tcgggaagct gaccattgta
      781 tttaatagcc tcatcaatca ggtcagtgcc ctccttgccg tctttgctaa tcagaacgcc
      841 gtctttgtcc gtcgtcacgt cggcctttcc tgaaacctgc tgcataagat tgcccatgaa
      901 ggttacggtc tgacgttttg aacaagtgtt tggtgttccc ttctctggta tcggagcacc
      961 gatgatgttc aattgttcgc gcgccttttc gttgaactca ctgtccggga agccctgaat
     1021 tagttgctga tagtacttgg cagcttcgtc tggctcttct tcggtttggt aagttgaagc
     1081 taaacgaaat agcacttcat cgttcaacga gaaacacggg tacttatcaa caatctcttt
     1141 caatctagac tgagcacctt tcaaaccgcc cttgccctga atcactttac cgccataaaa
     1201 ccgggcaatc gcaaggttgt gcatcgccag attctcttga acctctcgca ggcgatcttc
     1261 aactacagga cgcagcgaag tctttgggaa ctgctgcaac aaagccttca atcgttgttc
     1321 ggctttgcga gcgtgtgaaa tgtctctgtc ggaaagaccc atctggcgca tttccgcttc
     1381 ggcaaccttc aacattgcat cgtcagcaag cggatcagtt gggaagaatg tcagccagtc
     1441 ttgataccct tgcgccgctt gaatcaatga gctcgatgta ccttcaagga aaaatgaatc
     1501 agcgatcgcg agcttggcca acggcagaaa cgcggaatcc ggataggtgt tgatgatggt
     1561 ggcaaacaaa agccggcctg tatcgtgatg gcctttcctt acttccttcg cgccctcttc
     1621 aaacagggtt cgatctcgac ccgccagagc cgctcccgtc agttctgcat atttgtcgtc
     1681 accactgcct ttgaagattc caaagattcc gccctttttc ttcttctttg aactgctact
     1741 ggttgaactc gccgcggttc cacgagcgct tgcagtctgt tgaagtgcct gatctacacg
     1801 aggcccaagt tcggcaaccg ttgtttccag tcgctcaatt gccgtggtgt caaacttctc
     1861 agctcgatca ttcttcgcct tgagatcact aacttcagac tggactgaag aaacatcctt
     1921 ctccaatcct ttcaggcgca caacgggatc atcggcgttc ggcttcgtct tgtcgccact
     1981 ctttgccgct ggactcattg aggagatagc gctagttaga gaccgccgca ttagatcaag
     2041 tttggaagtc atgacttcca atcgttgagc gagggacgcc tctgtctgac cgcctgttcg
     2101 ttgtgcaact gcggcctgtg ttagccctaa caacaggaca caagagacca gcaaactaag
     2161 aaggcgacat ttcataaact aaacctccga aaaaactttg gttaggcgag aaagagtttt
     2221 cctgcttatc ggattcactt ttccttctct cggttcgccc aactcccaga aataataagt
     2281 atctaaaccc actgaaccgt ggcatttttc agttccttta ccgctttttc agcgtcagaa
     2341 ctgccaaata ttgcggatcc tgcaaccaga atttccgcgc cggcaccaac caccgtctcg
     2401 atgtttgact tgtcgatacc gccatcaatc tctattcgaa cattaagctg tttctcatta
     2461 atcgtttgac gtagacgcct gactttatcg atcgcctggg gtatgaattt ttgtccccca
     2521 aaccctggat ttacagacat taccaacaca tagtcagcaa attgtaatgc ttcttctacg
     2581 gcaacaaccg gcgtcgccgg attcagaact actcccgctt gcgctccagc agacttgatc
     2641 gacatcaagg ttctgtgtaa atgcgcatcc gcttcaacgt gaaccgag
//
LOCUS       DATCGC010001179         1491 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_183897, whole genome shotgun sequence.
ACCESSION   DATCGC010001179 DATCGC010000000
VERSION     DATCGC010001179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1491)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1491)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1491
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183897"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..513)
                     /locus_tag="VIJ87_11490"
     CDS             complement(1..513)
                     /locus_tag="VIJ87_11490"
                     /inference="COORDINATES: protein motif:HMM:NF012575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HEY5445060.1"
                     /translation="MSAEEQLQKRTRRSFLLLLPLGVVAGVFTSVGVAALRFLRPRIV
                     RESSDNWINIGSVSDLTGKIPLPQKISTDHVSGWAVTQEDHHVYILPGNQVVSAVCPH
                     EGCEVAWEKETNRFSCPCHESYFAADGSRLSGPARRGLDQLPTRVQDGTLQVQYQSFE
                     NNSAETIKRT"
     gene            812..>1491
                     /locus_tag="VIJ87_11495"
     CDS             812..>1491
                     /locus_tag="VIJ87_11495"
                     /inference="COORDINATES: protein motif:HMM:NF018484.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chlorite dismutase family protein"
                     /protein_id="HEY5445061.1"
                     /translation="MSSDKEEQVNNTRGSLRLAPTCSEVEEQKAKLPRQFVNFTFYHA
                     RPEWRLLLSDEKERCRAEFVKTVEEFRSSLLLHTYSTIGLRTNVDFMIWRIGYELEPI
                     QEMTARMNKTEMAKYIEPTQSFLSMTKRSMYIDKDNPEHDEDRLHIVPGKSQYLFVYP
                     FVKTREWYSRPAEVRQEMMEEHIRIGTKYRSVKLHTTYSFGLDDQEFVVAFETDYPAD
                     FLDLVQELR"
BASE COUNT          376 a          355 c          383 g          377 t
ORIGIN      
        1 tcatgttcgt ttgatcgtct ccgctgagtt gttttcgaac gattgatact gcacctgtag
       61 cgttccgtcc tgaactcgag ttggtaattg gtccaggcca cgtcgagccg gtccgcttag
      121 tcgcgagcca tcagccgcga agtaactctc atgacaagga cacgaaaaac gattcgtttc
      181 tttttcccag gccacttcgc aaccttcgtg aggacaaaca gcggagacca cttgattccc
      241 aggaagaatg taaacgtgat ggtcctcctg agtgacggcc caacccgata catggtctgt
      301 ggagatcttt tgcggtagcg ggattttacc ggtcaaatct gatactgacc ctatattgat
      361 ccagttgtcc gaagactctc gaacaatgcg tggtcgtagg aatcgaagcg cggcaacgcc
      421 aacgctggta aacacgccgg cgaccacgcc gagtggcagg agcaaaagaa aactccgtcg
      481 agttcgtttt tggagttgct cttcggcaga catgggcagt cattctctat gcaactgcga
      541 gcagtggcaa gtggatgttt tggtctttgg cgtttggtct taggtcttgg tcttcgattc
      601 tactgaggga ttctgaccga taatcgttcg attaggttcg acaaagacca aagtccaaag
      661 acctaagacc aaagcactaa catttaatga gacgcaccgc tcctcttctt tcttccacgg
      721 ttgcaatcag cccccagact cggcagaata actttcgctt tcgcaccatc cctgaaaggt
      781 caatcgtctt acagttagag gtaaaacaaa aatgagcagc gacaaggaag aacaggtcaa
      841 taacacccgt ggttctcttc gtcttgcccc tacttgctca gaggtagaag agcagaaagc
      901 gaaactacca agacagtttg ttaacttcac tttttatcat gcgcgtccgg aatggcggct
      961 acttttgagc gatgagaagg aaagatgtcg ggccgagttt gttaaaacag ttgaggagtt
     1021 tcgcagttcg ttactgttgc atacctactc gactatcggg ttgcgcacga atgtggactt
     1081 tatgatctgg cgcatcggtt atgaactgga acccatccag gagatgaccg cgcgaatgaa
     1141 taagactgaa atggcgaaat acattgaacc gacgcagtcg ttcctctcga tgacaaagcg
     1201 ttcaatgtat atcgacaaag ataaccctga gcatgatgag gatcgtctgc acattgtgcc
     1261 tgggaagtct cagtatctct ttgtgtatcc gttcgtgaag actcgtgagt ggtattcgcg
     1321 tccggccgaa gtccggcagg agatgatgga ggaacacatc cgcatcggga caaagtaccg
     1381 gtcagtgaaa ctgcacacta catattcatt tggtctcgac gatcaggagt ttgtggttgc
     1441 gtttgagacg gactacccgg cggactttct tgacttagtg caggagttac g
//
LOCUS       DATCGC010001180         1362 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_383007, whole genome shotgun sequence.
ACCESSION   DATCGC010001180 DATCGC010000000
VERSION     DATCGC010001180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1362)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1362)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1362
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_383007"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(134..>1362)
                     /locus_tag="VIJ87_11500"
     CDS             complement(134..>1362)
                     /locus_tag="VIJ87_11500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445062.1"
                     /translation="KRNVLKSQLPLIVIAATVCLLTLMWFVYRSLGRSRCDNIFEQTA
                     DRVQADLEFIKVKGGVTLGTEKVQDLTDSSQKVGLHLKSCCIAQQAKALNAEQLQVCM
                     SGAKDYQTQIIQVATNIKEATAAEEQQKPELAKQKTEAAKEGVSKVGNTEKTLAKLTE
                     ALPASVAVKNGAEQEPNDTTPQANIAEIGTTIAGEINPTRDVDFFKFQYRDAKKRRDN
                     IVVHLKNQSTTLRPSLILHNEDKSIARNWEAANAPGADFEFSFLAEPGKKYFVGVASY
                     YNGTSGAYALSLLPQKAYDQYEPNDDAFTPTPLNVGQTVEANIMNGSDVDSYKVSGVK
                     EKNLTIQVKNLSPALQPSVRVLKSDKSIAQNWNAAGAPGADLNFSIQSEPGQDYFVEV
                     ASYYNQTAGPYKLTVR"
BASE COUNT          257 a          357 c          365 g          383 t
ORIGIN      
        1 ttgaactccc tacgatcgag cttggcggtg ggagcgcgcg ctgcatgatc gcgacgattc
       61 acctgccgcc gcggttgtag cattacgatt gaagttgcgc ggccttgcga tcagctacgg
      121 ggcgccatgg atcctaacgg actgtcagtt tgtacggtcc ggcggtctga ttgtaatagg
      181 acgcgacttc gacgaagtag tcttggccag gctcggattg gatcgaaaag tttagatctg
      241 cgcccggcgc gccagcggcg ttccagttct gagctatcga cttgtccgat ttaagcacgc
      301 ggacgctcgg ctgtaatgct ggggataaat tcttcacctg tatcgtgaga ttcttctctt
      361 tcactccgga gactttgtag gagtccacat cgctgccatt catgatattt gcttcaacgg
      421 tctgccccac gttgagcggt gtgggcgtga acgcgtcgtc gttgggttcg tactggtcgt
      481 acgccttttg cggcaacagc gagagcgcgt acgcgcccga agtaccattg taataagagg
      541 caactccaac gaaatacttc ttccccggtt ccgccaagaa tgagaactca aagtccgcac
      601 caggtgcatt tgcagcctcc caattacgcg cgatcgattt gtcttcgttg tgcaaaatca
      661 gtgaaggccg cagcgtcgtc gattggtttt tcaaatgcac aacgatgttg tcgcgtcgtt
      721 ttttcgcatc gcgatattga aatttgaaga agtccacgtc cctggtcgga ttgatttctc
      781 ctgcgatggt tgtgccgatt tcagcgatgt tcgcttgtgg ggtggtatcg ttcggttcct
      841 gctcggctcc gtttttcacg gccacggatg caggaagagc ctcagttaac ttggccaacg
      901 ttttttcggt gttccccacc ttgctgactc cttctttggc cgcttcggtt ttctgttttg
      961 caagctcagg tttttgctgc tcctcggcag cagtcgcttc tttgatgtta gtcgcgacct
     1021 gaatgatttg agtttggtaa tctttagcgc cactcatgca gacttgtaat tgctccgcgt
     1081 tgagcgcctt ggcttgttgt gcgatgcaac agctcttgag atgaagccca actttttgtg
     1141 aagaatcggt caagtcctgc actttctcgg tgcccagggt cactccgccc ttgaccttga
     1201 tgaactccaa gtccgcctgc acgcggtcag ctgtttgttc aaagatgttg tcgcaccgtg
     1261 agcggcccag actgcgatag acgaaccaca ttagcgtcag taaacatacc gtcgctgcga
     1321 taactatcag cggcagttgg ctcttcaaaa catttcgttt cg
//
LOCUS       DATCGC010001181         1625 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_318898, whole genome shotgun sequence.
ACCESSION   DATCGC010001181 DATCGC010000000
VERSION     DATCGC010001181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1625)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1625)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1625
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_318898"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(96..>1625)
                     /gene="uvrB"
                     /locus_tag="VIJ87_11505"
     CDS             complement(96..>1625)
                     /gene="uvrB"
                     /locus_tag="VIJ87_11505"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: protein motif:HMM:NF003673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HEY5445063.1"
                     /translation="GLLFFVEPGTRMSREMLLQRLVELQYERSDVNFQRGTFRVRGDV
                     VEIYPSYQDLAYRIELWGDEIDSISTIDPLLGDVIEKHSSRVPIYPKTHYVMSRPTIK
                     RAIKTIKEELEWWEPKLINEGKLVEAQRLHQRTMFDLEMIKEMGFCRGIENYSRHLTG
                     KKTGEPPPTLLDYLPRDTLMVIDESHQSVPQVRGMFEGDQSRKRTLVEYGFRLPSALD
                     NRPLNFKEFEARIGQTIYVSATPGPYELTKVSGEVVEQIIRPTGLMDPVVEVQPVKGQ
                     IDHLLEECRQRAEKHERVLVTTLTKRMAEDLTEYFTEVGVRVRYLHSDIETLERIKIL
                     RDLRRGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSEQSLIQTIGRAARNSE
                     GKAILYADRITDSMKRAIDETNRRRAIQADYNSEHGITPTTIVKPIEATLITASEADY
                     FKLPSEIEDIEDYSPAKIEATIARLEVEMRGAAKRFEFEKAAELRDRIKVLRDRELQV
                     M"
BASE COUNT          376 a          461 c          378 g          410 t
ORIGIN      
        1 ataaacttca gtttgtcgtc gtctactatg gcaaacctct taaatgcccc aggtaccttt
       61 aaccaacgtc acgacaaact gaagtttatc ggacatcaca tcacctgaag ttcgcgatcg
      121 cgcaacacct tgatccgatc acgcaattcc gccgctttct caaactcaaa ccgttttgcg
      181 gcgccacgca tttcgacttc caagcgcgcg atcgttgcct caatctttgc cggcgaataa
      241 tcctcgatgt cctcaatctc ggatggcagc ttgaagtaat ccgcttcaga cgcagtgata
      301 agagttgcct cgattggctt cacaatcgtt gttggtgtga tgccatgctc actattgtag
      361 tctgcttgaa ttgcacgtcg cctgtttgtt tcatcaatgg cccgcttcat cgagtcggta
      421 atgcggtcag cataaagaat cgctttaccc tcggagttac gggccgcccg accgatagtt
      481 tgaatcaacg attgctcaga acggagaaac ccttctttgt ccgcgtcgag tatggcaacc
      541 agcgaaactt caggaaggtc cagaccttca cgcaacaggt tgatgcccac caaaacatca
      601 aactctccac gcctaaggtc acggagaatc ttgatgcgtt caagtgtttc aatatcagaa
      661 tgcagatagc gaacgcgaac acccacttcc gtaaaatact ccgttagatc ctcggccatt
      721 cgcttcgtga gtgtcgtcac caaaacacgt tcgtgctttt cagctctttg tcgacactct
      781 tcgagcaggt gatcaatctg accttttacc ggttgcactt cgacgacagg atccatcaac
      841 ccggtgggtc taatgatctg ctcaacaact tcaccgctta ctttcgtcag ctcatacggg
      901 cccggcgtgg ccgaaacgta gattgtttgt ccaatgcgcg cttcaaactc cttaaagttc
      961 agagggcgat tatcgagagc ggatggcaat cgaaatccat actcgaccag cgttcgctta
     1021 cgcgactgat cgccttcaaa cattccgcgt acttgtggca ctgactgatg tgactcatca
     1081 ataaccatca gggtgtcgcg aggaaggtag tccaacagag tcggcggagg ttcgcctgtt
     1141 tttttcccgg taagatgtct cgaatagttt tcgataccgc ggcaaaatcc catctccttg
     1201 atcatctcga ggtcaaacat cgttcgctga tggagtcgct gcgcttcgac gagtttgcct
     1261 tcgttgatta actttggttc ccaccactcg agttcttcct tgatcgtctt gatcgctcgt
     1321 ttgattgtcg gccgcgacat cacgtagtgc gtcttcggat agatcggcac gcgcgagctg
     1381 tgcttctcga tcacgtcacc gagcagcgga tcgatcgtgg agattgagtc gatctcgtcg
     1441 ccccacaatt cgatgcgata cgcgaggtcc tgataactcg gatagatctc gacgacgtcg
     1501 ccgcgcacgc gaaacgtgcc gcgctgaaag ttcacgtcag aacgttcata ctgcaactcg
     1561 accagacgct gcagcagcat ctcgcgcgac atgcgcgtgc ccggctcgac aaagaacaac
     1621 agacc
//
LOCUS       DATCGC010001182         1291 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_318910, whole genome shotgun sequence.
ACCESSION   DATCGC010001182 DATCGC010000000
VERSION     DATCGC010001182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1291)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1291)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1291
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_318910"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..558
                     /locus_tag="VIJ87_11510"
     CDS             <1..558
                     /locus_tag="VIJ87_11510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445064.1"
                     /translation="ATRNFTFTTIPSPSKTDAASKAALTMIDGVIDGGSGELSALTDG
                     LLPTNDDDPGANLYFRAGSMGGRFRMDFGSPIDIARVITYSWHPNTRGPQLYKLYAAD
                     GSESGINLAPKRGVDPATCGWKFIATVSTIPKQGEDGGQYAASVMDASGSLGKYRYLM
                     FDCYVTELNDDWGNTFYSEIDVIGK"
     gene            complement(670..1260)
                     /gene="leuD"
                     /locus_tag="VIJ87_11515"
     CDS             complement(670..1260)
                     /gene="leuD"
                     /locus_tag="VIJ87_11515"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: protein motif:HMM:NF002458.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEY5445065.1"
                     /translation="MNKFTKHTGIVAPLDRANVDTDQIIPKQFLKRIERTGFGEFLFF
                     DWRYLADGTPNPKFILNETRYQGASILVTAKNFGCGSSREHAPWALAEYGFRVIIAPS
                     FADIFANNCFKNGMLPIVLAEPIVGEILQRTQENEGYKLTVDLENQTVVDEIGLSTIF
                     RVSEFQRDCLLEGLDDIGLTLRHEDAISAYEAKRPV"
BASE COUNT          316 a          325 c          320 g          330 t
ORIGIN      
        1 gcgacgcgca actttacttt cacgactatc ccttcgccga gcaagaccga cgctgcttcg
       61 aaagccgcgt tgacaatgat cgacggagtt attgatggcg gaagtgggga actaagcgcg
      121 ctgaccgatg gactgcttcc gacaaatgac gacgatccag gcgctaacct ttactttaga
      181 gcgggctcga tgggcggaag gtttcgcatg gattttggaa gtccaatcga tatcgctcga
      241 gtgatcactt attcctggca cccaaacaca cgcggcccac aactctacaa gctctacgca
      301 gccgatggtt cagaatcagg tatcaacctt gcacctaaac gaggagtgga tccagctact
      361 tgcggttgga agtttatcgc cacagtgagc acgattccca agcaaggtga agacggcggg
      421 cagtatgcag caagtgttat ggatgcgagt ggaagcttgg gtaagtatcg ctacttgatg
      481 tttgattgtt atgtaaccga actgaacgac gattggggaa atactttcta tagtgagatt
      541 gatgtgattg ggaagtaggt cttgggactt gggtcttggg tcttcgagct tggtacttcg
      601 ttcgtgtcgc taccggacta gaaaatcaaa gtctttttct gacccgtgtt ctttgtgtca
      661 atctgtggcc tataccggtc tctttgcctc ataggcacta atcgcgtcct catgcctcag
      721 ggttaacccg atgtcgtcca gaccttccaa caggcaatcg cgctgaaact ccgaaactcg
      781 aaatatcgtc gacaatccaa tctcatcaac cacagtttgg ttttccaaat ccacggtgag
      841 tttgtagcct tcattctcct gcgtccgctg taggatctcg ccaacgattg gctcggcaag
      901 cacaatgggc agcattccgt ttttaaagca gttgttcgcg aagatgtcag caaacgacgg
      961 cgcgataatc acgcggaaac catattcagc caacgcccat ggtgcgtgtt cgcgtgacga
     1021 cccgcaccca aagttcttgg cagtcaccag aattgaagcc ccctgataac gcgtttcgtt
     1081 gaggatgaac tttggattcg gtgttccgtc ggccaggtag cgccaatcaa aaaagagaaa
     1141 ttctccgaaa cctgttcgct caatccgctt gagaaactgc tttggaatga tctgatcggt
     1201 atcaacattc gctcgatcaa gcggcgcaac aattccagtg tgcttagtaa atttattcat
     1261 ctcttcctaa ccctttagtg acgccttcaa a
//
LOCUS       DATCGC010001183         1478 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_283537, whole genome shotgun sequence.
ACCESSION   DATCGC010001183 DATCGC010000000
VERSION     DATCGC010001183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1478)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1478)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1478
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283537"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(83..682)
                     /locus_tag="VIJ87_11520"
     CDS             complement(83..682)
                     /locus_tag="VIJ87_11520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445066.1"
                     /translation="MKKRVLLTLIILLLGITSYAQDKIEISLKNSSRQESQTRDQLQR
                     LVKTYDLSMWIFTKSILIDEKAIPHSHPTLTLNTRYLKDDDLLLSTFVHEQLHWFLVQ
                     RDKETKEAMKDLRALFPKVPAGLPDGAGDEESTYLHLLVNYLEYRADRELLGELRAKQ
                     VMDFWSSDHYTWVYKTVLERRRDIGNILFKYKLIPAASA"
     gene            complement(962..>1478)
                     /locus_tag="VIJ87_11525"
     CDS             complement(962..>1478)
                     /locus_tag="VIJ87_11525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445067.1"
                     /translation="VMPKYNSFMRDLQEVGRGVIVGAPGWEQKLKDNQQQFAEKWVNR
                     PGFRAVYDNLSNADYVNALYTNAGIVPPQAEKEALVAKLDAASETRAAVLLDVAANST
                     FRQQERSPAFVLMQYFGYLRRDPDAAPDFDLSGYNFWLNKLNSFGGNFQQAEMVKAFI
                     TSFEYRQRFGQ"
BASE COUNT          366 a          394 c          345 g          373 t
ORIGIN      
        1 tggcccgggc ggttacgcgc aacccaagcc ggacgacgct agttgcgaaa aacgctctcc
       61 cgcgctcacc tgcaacgaat tgttatgcgc tcgcagccgg aatcagcttg tacttgaaca
      121 atatgttccc gatgtcgcgc cttcgctcca gcacagtctt atacacccag gtgtaatgat
      181 cactcgacca aaaatccatc acttgcttag ctcttagctc tccgagtaat tctctgtcgg
      241 ctcgatactc caggtagttg accagcagat gtagataggt ggattcctca tcacccgctc
      301 cgtcaggaag gccagcaggc acttttggaa atagtgcccg taggtctttc atagcttcct
      361 ttgtctcttt atctctttgc actaagaacc agtgaagttg ttcatggacg aaagttgaga
      421 ggagtaaatc atcgtccttt agataccgcg tattcaaagt gagagttggg tgactgtggg
      481 ggatcgcctt ttcatcaatc agaattgact tggtgaatat ccacatcgac aggtcatagg
      541 tcttaacaag tctttgtaac tgatctctcg tctgactttc ctgtcgactg ctattcttaa
      601 gggaaatctc aattttatct tgagcgtatg acgtgatacc cagaagtaag atgatgagtg
      661 ttagcaagac tctcttcttc attttgtccc cactcagtac gattctgacc gcaagcgcat
      721 aacgctgatg ctataaagcg ggcaccttgc gaaaccgaaa gcggttaaac ttccgggttt
      781 gtaatcgcca aaggaggcac ccgcgatgac attatatatc ggtgtagaca tccacgcgtg
      841 accaacaaac gctcagttaa ttggacacga gtgatggaag aaaaagggcg cacgcaagat
      901 cgaaagatct tgattgcgcc ccttatgcct gtgttcaact tacttcttca cgcgactaac
      961 gtcactgacc aaagcgctgt cggtactcga atgaagtaat gaacgccttg accatctcag
     1021 cttgttggaa gttgccgcca aaagaattca gcttgttcag ccaaaagtta tagccgctca
     1081 agtcgaaatc cggggccgca tcgggatcgc gccggagata accgaaatac tgcatcaaga
     1141 cgaaggcggg actgcgctct tgttgtctga acgtagaatt agcggccacg tccaacagca
     1201 cggcggcacg cgtttcactg gcagcatcga gcttagccac cagcgcctcc ttttctgcct
     1261 gcggcggcac gatgcccgca ttcgtataga gcgcattcac ataatcggcg ttcgacaaat
     1321 tgtcgtaaac cgctctgaac cccggtcggt taacccactt ctccgcaaac tgctgttggt
     1381 tgtctttcag cttttgttcc catccgggtg cgccaacaat cacgccacga cccacctcct
     1441 gcaagtcgcg catgaaagaa ttgtattttg gcatcaca
//
LOCUS       DATCGC010001184         1163 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_483818, whole genome shotgun sequence.
ACCESSION   DATCGC010001184 DATCGC010000000
VERSION     DATCGC010001184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1163)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1163)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1163
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_483818"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            184..723
                     /locus_tag="VIJ87_11530"
     CDS             184..723
                     /locus_tag="VIJ87_11530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445068.1"
                     /translation="MSELDEAWALALAEAEQRARSSGRGELAEYLSLRNSNDLLRKAG
                     IDWLLSTFTLLAGEANRVGASLQIANQDLHRFKTGNSTMVGTLLTLSNGVRQLFVEAG
                     WPRTPRDGFVRGGGLASAKLRHLGITSANEELVLARSGTGSPSWFTSNENVVRSVLHE
                     ADIRRHIGILLDVRRSRRH"
     gene            complement(882..>1163)
                     /locus_tag="VIJ87_11535"
     CDS             complement(882..>1163)
                     /locus_tag="VIJ87_11535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445069.1"
                     /translation="RFVIFDLLTISIRALRPSRHVALGIPPAIVRSQTFGQVPCPFDS
                     GPEIMKNAKKTKIVFTKLRGGVRKGAWVTEKVSGQCHRRQTVDRSSPTY"
BASE COUNT          261 a          303 c          317 g          282 t
ORIGIN      
        1 taaatgcgtt tcgggtgaaa aatgcattgt cgggtattgt ggggggacga ttcggcgtca
       61 tgataccatc gcacctgatt gacggcgagt aggtattatt gattgccgtg ttccattcag
      121 ggcccaccag tgacttaaaa acaagattat gaggcgtggc aattccaaac tcggagaacc
      181 tttgtgagtg aacttgacga agcatgggcg ctggcacttg cagaggcaga acaacgtgca
      241 cgctcgtccg ggcgtggcga gcttgctgag tatttgtcac ttcgtaactc aaacgacctc
      301 ttacggaaag ctggtatcga ttggttgttg tcgactttta cgcttcttgc cggagaagct
      361 aatcgcgttg gcgcgagtct tcaaatagct aatcaggatc tacaccgctt caagaccgga
      421 aactcaacca tggtaggtac cctcctcact ctatcgaatg gcgtccgaca gctgtttgtt
      481 gaagctggct ggccgagaac cccccgtgat ggttttgttc gaggcggcgg gctggccagc
      541 gcaaagttac gtcacctcgg tatcacgtcc gcaaatgaag agttggtgct ggcgaggagc
      601 ggcaccggat caccgagttg gtttacctca aacgaaaacg ttgtgcgctc tgttcttcat
      661 gaagctgaca tccgccgcca cattggaatt ctcctggatg tccgtcgttc gaggcgacat
      721 tgatgggggc tcaatcccac ccacggcagt gggtggatgg ttcaagtcct acctacaaac
      781 cgccactcct cgaatctgac gctccgcacg gagaatgatc ctggatcctc gaagactcgc
      841 tgtaactccg cgcgaagcgt cgaggctttt gagagattgc tttaataggt tggacttgaa
      901 cgatccaccg tctgccgtcg gtggcattgg ccagatacct tttccgtaac ccatgcacct
      961 tttcgcaccc ctcccctcaa cttcgtaaaa acaatctttg ttttcttggc attcttcatg
     1021 atctcgggac cgctgtcgaa cgggcacggc acttgcccaa atgtttgtga gcgaacgatc
     1081 gctggtggaa tccccagagc gacgtgacga ctcgggcgta acgcccggat tgaaatcgtg
     1141 aggagatcaa agatgacgaa ccg
//
LOCUS       DATCGC010001185         1313 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_383030, whole genome shotgun sequence.
ACCESSION   DATCGC010001185 DATCGC010000000
VERSION     DATCGC010001185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1313)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1313)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1313
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_383030"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1313
                     /locus_tag="VIJ87_11540"
     CDS             <1..>1313
                     /locus_tag="VIJ87_11540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445070.1"
                     /translation="IPGAKTRISATLDNEGDSEVQVKRVNVEAFGYDNRLDTADKMLP
                     ETDTDGHLDLLTPKATSLSVPSAEHLYDGLLFGQSLKIKADVVVDGANFSLVTEIKRD
                     VTPPVEIVRVDPAIYVTTPATSQKPLEFKVRLVNHQATEFKGLVRIVGATLETGREIS
                     LMPHSSDVVNVSVKTMPVSKRRQPQSEVDVTVDLPIPKNPINKRAVPLIYADASVAPD
                     LTVGYIPSFDETLAQSLSALGVEAKQLSVADISSGDLSKFSTIILDNRSYEAHHELIP
                     VNDRLLKFVEDGGTLLVFYHKTNEWNPDERQKRPQLAPYPILLGDNRVTEEDAPIGFL
                     QPRHPLLNFPNRITQADFVNWIQERGLYFPREWDSHYTALLTTNDKGEQPLHGGLLVA
                     PYGKGNYIYTSLVWYRQLRAGIPGGYRFFANLISYGKGKPDASAS"
BASE COUNT          352 a          339 c          319 g          303 t
ORIGIN      
        1 tatcccaggc gctaaaacca ggatttcggc tacgctcgac aatgagggcg attctgaagt
       61 gcaggttaag cgggttaacg ttgaggcctt tggctatgac aatcgactcg acacggctga
      121 caagatgttg cctgagaccg acacggatgg gcacctcgac ctacttactc caaaagcaac
      181 atcattgagc gttccttcag ccgaacatct ttacgacgga ttgttgtttg gacagtcgct
      241 gaagatcaaa gccgacgttg tagttgacgg cgcaaacttt tcccttgtta ccgaaatcaa
      301 gagagacgtc acgccaccgg tagaaatcgt acgcgtcgat ccggctattt atgtaaccac
      361 gccggccaca tcgcaaaaac cattggagtt caaagtacga ctggtgaatc atcaggcgac
      421 tgagttcaaa ggcttggtaa ggatagtagg tgcaaccctc gaaactggac gtgagatatc
      481 gttaatgccc cacagctcag atgttgttaa tgtttccgtc aagaccatgc cggtcagcaa
      541 acgccggcag ccccagtcgg aagttgacgt gaccgttgac ttgccaatcc ccaaaaatcc
      601 aatcaacaaa agggctgtgc ctctaatcta tgccgatgct tcggtcgcac cagacttaac
      661 tgttggctac ataccaagtt tcgacgaaac attggcccag tcgctttctg cgcttggcgt
      721 tgaagctaag caactgagtg ttgccgacat cagtagtggt gatctttcga agttcagtac
      781 aatcattctg gacaaccgtt cctacgaagc tcatcacgaa ctgattcctg ttaacgatcg
      841 cttgttgaag tttgtggaag acggaggaac gctactggtt ttctatcaca agaccaacga
      901 gtggaatccc gacgaacgtc agaaacgacc acaactcgcg ccttatccaa tcttgttagg
      961 agataatcga gtgactgagg aggacgcgcc aattggattc cttcaaccgc ggcatccact
     1021 tttgaatttc ccaaatcgaa taactcaagc tgattttgtt aactggattc aagagcgagg
     1081 tctttatttc ccgcgggagt gggattcgca ttacaccgcg cttctaacta cgaacgacaa
     1141 gggcgaacaa cctttgcacg gaggactgct cgtagcgccc tacggcaaag ggaactacat
     1201 ctacacgagc ttagtctggt accggcaact aagggccggc atccctggcg gctatcgctt
     1261 cttcgcaaat ctaatcagct acggaaaagg aaaacctgac gcaagcgcca gca
//
LOCUS       DATCGC010001186         1031 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_116046, whole genome shotgun sequence.
ACCESSION   DATCGC010001186 DATCGC010000000
VERSION     DATCGC010001186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1031)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1031)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1031
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116046"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1031
                     /locus_tag="VIJ87_11545"
     CDS             <1..>1031
                     /locus_tag="VIJ87_11545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445071.1"
                     /translation="LSALVASAAVPGLRNLASANLRNPIDSIDRESLVRRHNPVNTRI
                     DPLSALSVGNGRFAFTADVTGLQTVTHEYESTMPLCTLSEWGWHTTPKPKNLVGASLK
                     LVPYDTHGRQVGYQTSSEGQAELFNWLRENPHRLHLGRIRFCRLAAPVREIESNSITE
                     INQELDLWRGVLTSRFKLDGELVQVITVVHPTLDVLGVNIESNSLKTKQLGVCLSFPY
                     GSSSMQAADWQQPDKHQTTLINRSPTRVDLRRVLDNDSYSVSLALEDGATVSEAGAHS
                     FVLKSREDTERLSFTAQFWQNERPRSFPSALAALSANTKHWRRFWSTGGTVELVDSKD
                     KRAVELERRV"
BASE COUNT          254 a          267 c          263 g          247 t
ORIGIN      
        1 ctttctgcct tagtcgcgtc ggccgccgtt cctggtttgc gaaacctggc cagcgcgaat
       61 ttgcgcaatc ccatcgattc gatcgaccgt gaatcactag ttcgacgcca caatcccgtc
      121 aacacacgaa ttgatcctct ctctgcactc tcggttggaa atggacgatt cgctttcacc
      181 gctgacgtca ctggactaca aacggttacg cacgaatacg aaagcacgat gcctctttgc
      241 acgctgtcgg aatggggttg gcatacgact ccgaagccaa agaaccttgt aggtgcgagt
      301 ctcaagctcg tgccgtacga cacacatggc aggcaagttg gttatcaaac gagttcagaa
      361 ggtcaggctg aactcttcaa ttggttacgc gagaatccac atcgtcttca cctcggacga
      421 attagattct gccggcttgc tgcacctgtc cgggaaatcg agtcaaactc gataactgaa
      481 atcaatcagg aattggatct ctggcgtgga gtgctgacga gtagatttaa attggatggg
      541 gaacttgtcc aggttatcac tgtggttcat ccaacccttg atgtacttgg ggtcaacatt
      601 gaatcaaatt cattgaagac caaacagtta ggcgtctgtc tcagttttcc atacggatct
      661 tccagcatgc aggcggctga ttggcaacaa ccggacaaac atcaaaccac gctaatcaac
      721 cgctcgccga ctcgagtcga cctgcgtcgt gtgttggata atgattccta ttctgtttcg
      781 cttgcgcttg aggatggggc aacagtcagt gaggcgggag cgcattcgtt tgttctgaag
      841 agcagggaag acacagagcg actttcgttc accgcacagt tctggcaaaa cgaacgacct
      901 cgttcatttc caagcgcgct ggcggctctt tcggctaaca ccaagcattg gcgacgcttt
      961 tggtccacag gcggaacagt tgaactcgtc gacagcaaag acaagagagc cgttgagtta
     1021 gaacgacgag t
//
LOCUS       DATCGC010001187         1215 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_451329, whole genome shotgun sequence.
ACCESSION   DATCGC010001187 DATCGC010000000
VERSION     DATCGC010001187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1215)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1215)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1215
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_451329"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(16..894)
                     /locus_tag="VIJ87_11550"
     CDS             complement(16..894)
                     /locus_tag="VIJ87_11550"
                     /inference="COORDINATES: protein motif:HMM:NF019934.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspG"
                     /protein_id="HEY5445072.1"
                     /translation="MRALTIISILLLAFASANADVSKKQARKAVATAAGFSLPSNAVR
                     VDRINSTSNASAEVSAQLELVFRVARDEEGQWRLKELRTADSRWEDISVLAQAAKLDF
                     QQDKCDPAPNEFGRVKTESSLSTKRIRCLLANLFAVSLPSDAVRIKEVSGLGIGSQPS
                     ALAVALLQADFRLAKDSGSWRAVEFHTGNRPWVRIDSVPSAVDSQKRTQTTEQLNAIV
                     AALEAFHKDRGSYVASDRHSVLIDHLTPHYLSRVIRLDAWHRPFRYQGDHDHFTLRSL
                     GADGKENTSDDIVLTR"
     gene            complement(908..>1215)
                     /locus_tag="VIJ87_11555"
     CDS             complement(908..>1215)
                     /locus_tag="VIJ87_11555"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5445073.1"
                     /translation="SFSVVTARDGREAYKILQTDPNFTAAILDVVMPHISGPELVRYM
                     KTENRLMRIPVMMMTAEQDPKLSSDSFAAGAVVFLPKPFTTAQLQIMLQMLIGKASS"
BASE COUNT          305 a          307 c          312 g          291 t
ORIGIN      
        1 aagttgagcc agaacctatc tagtcaacac aatatcgtcc gaagtgttct ctttgccgtc
       61 ggcgcctaac gatcgcaagg tgaagtgatc gtgatcgcct tgataccgaa aaggccggtg
      121 ccaggcatca agccgtataa ctcgcgatag gtaatgaggc gtcaggtgat caatcagcac
      181 ggaatgtcga tcagaagcta catacgagcc ccgatccttg tgaaatgctt ccagagccgc
      241 aacgattgca ttgagttgtt ccgtcgtctg ggttcgcttt tgtgaatcga ctgcagaggg
      301 taccgaatca attcttaccc atggtcgatt tcctgtgtga aactcgaccg cgcgccaact
      361 tcccgaatcc ttcgcgagtc gaaagtcggc ctgcaaaaga gccactgcca atgccgacgg
      421 ctgtgaacca attcccagtc ccgagacttc cttgatgcgc actgcatcgg aagggagact
      481 aactgcaaac aagttcgcaa ggagacaacg gatgcgcttg gtactcaatg aagattccgt
      541 cttcactcga ccaaactcat tcggtgcggg gtcacacttg tcttgttgaa aatctagctt
      601 agcggcttgc gctagaaccg aaatgtcttc ccaacgtgaa tcagcggttc tcaattcttt
      661 taggcgccat tgtccctctt catctcgagc gactcgaaat accaattcaa gctgtgctga
      721 aacttccgcg gatgcgttac tggtggagtt gattcgatcc acgcgtactg cgtttgaagg
      781 caacgagaag ccggccgcgg ttgctacggc tttgcgggct tgcttcttac tcacatctgc
      841 atttgcagag gcgaaggcga gaagcaggat tgagatgata gtgagtgccc gcatcgacag
      901 ttgagaatca ggaggatgcc ttacctatca gcatctgcaa cataatttgc aattgggccg
      961 tggtgaacgg ttttggtaga aatacaacgg caccagcagc aaaactatcg gacgacaatt
     1021 tcggatcctg ttcggcagtc atcatcatta ccggaatgcg catgagacgg ttttcagtct
     1081 tcatgtaacg aacaagttca ggacctgaaa tatgaggcat gacaacgtcg aggatcgcag
     1141 ccgtaaaatt cgggtcagtt tgcagaatct tataagcctc gcgtccgtcg cgtgcggtaa
     1201 cgacgctaaa gctct
//
LOCUS       DATCGC010001188         1246 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_319005, whole genome shotgun sequence.
ACCESSION   DATCGC010001188 DATCGC010000000
VERSION     DATCGC010001188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1246)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1246)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1246
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_319005"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1035
                     /locus_tag="VIJ87_11560"
     CDS             <1..1035
                     /locus_tag="VIJ87_11560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445074.1"
                     /translation="QFELPASLTAITRIDRGYTDSPDSSFTSVFDDFTGPTGFNSHGP
                     ANSAANVSVIHAPVANHDPLLQRAALVSWNGPGADTFFQSNWTNLGGVNASSFGTVDF
                     RVSRQCANPLDLLCSKQSNWFNFETNFSIRLVAGDGTLSNPVQLHDYLSLTGPVGSLV
                     LGFGTAGHPILQTARIPLAAFGNSSIVSNLRGVRFTFDDTRRDEIYIANIQLSKLNGL
                     LAPAHAAPSLLPIADTLIDTVNSGNDVNKIKSIRSVQSGTGPNGVEIELTSNREFLPQ
                     GEMLTLRLGSLEFNLSHYPSTGETTRIIFTLTSEEFAQVTQGDSVFVDYGSGASRWNF
                     GKVDKSMLNR"
BASE COUNT          295 a          323 c          310 g          318 t
ORIGIN      
        1 caattcgagc taccggcatc gctcacagcc attaccagaa tcgatcgagg ttacactgat
       61 tcgccggatt catcgttcac ctcagtcttc gatgacttca ccggtcctac cggtttcaat
      121 agccatggac cggctaacag tgccgccaac gtttctgtaa ttcatgctcc ggtcgcgaac
      181 catgacccgt tgctgcaacg tgcggctttg gtttcgtgga atggaccggg ggctgatact
      241 tttttccaaa gtaactggac caacttaggc ggcgtaaatg caagttcgtt tggcacggtt
      301 gattttcgcg tgtcaagaca atgtgccaat ccactggacc ttctttgcag caaacagtct
      361 aactggttca atttcgaaac caacttttcg atccgtttgg ttgccggaga cggaactctt
      421 tccaacccgg tgcaacttca cgactatctc tctttgaccg gaccagtagg tagtcttgtt
      481 ttaggtttcg gaacagcggg acatccgatc ctgcagacgg cgcgcattcc gctcgcggcg
      541 ttcggcaata gctcgattgt aagtaacttg cgcggtgtgc ggttcacttt cgatgacacc
      601 cgacgcgatg aaatctacat cgcaaacatt caactctcaa aactcaatgg gctgttggcg
      661 cccgcacacg cagcgccatc gctgctgccc atcgctgata cactcatcga cacggtaaac
      721 agcggaaatg atgtcaacaa gattaagtcg atccgatcgg tccagtctgg aaccggtccg
      781 aacggtgttg aaattgagct gaccagcaat cgtgagtttt tgccgcaggg tgaaatgctt
      841 acacttcgcc ttggttcgct ggaattcaac cttagccact atccaagtac cggtgagact
      901 acccggataa tctttacgct aacatccgag gagtttgcac aagttaccca aggtgattcg
      961 gtgttcgtcg actacggaag cggtgcaagc aggtggaact tcgggaaagt tgataagagc
     1021 atgctcaatc gctagatgtc cggattgatt agagcagtta agaaccgata atggtggagt
     1081 cgaacccgaa gttctttcgg acaacactag tcgtacgaaa tatctagtac tggtcatttt
     1141 gagcaggcgt agttgtcgcg cgaacttcct ctcattctca ccgtggcttt agcccggtgt
     1201 tatggcagcg ctaaagaagg agaacggttt caaccgttta cctctg
//
LOCUS       DATCGC010001189         1966 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_85481, whole genome shotgun sequence.
ACCESSION   DATCGC010001189 DATCGC010000000
VERSION     DATCGC010001189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1966)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1966)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1966
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85481"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1945)
                     /gene="galB"
                     /locus_tag="VIJ87_11565"
     CDS             complement(<1..1945)
                     /gene="galB"
                     /locus_tag="VIJ87_11565"
                     /inference="COORDINATES: protein motif:HMM:NF041463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004565 - beta-galactosidase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galactosidase GalB"
                     /protein_id="HEY5445075.1"
                     /translation="MAYSSIWLNGQFVGGWPYGYASYEVDLTPYLKFGNENVIAIRLD
                     NPPDSSRWYPGGGLYRNVWLVKTSPVHVANWGTYITTPNISKIAGTVEQTITVRNDSS
                     TAQKARVFGQVYQLGPRGNRVGLPLMHGWNEVDIPAAGVQVTQVVGNVASPKLWSLKA
                     RNLYVVVTTIEQQGKVIDEYETVFGFRTIKFDEKEGFYLNGEHVYLKGVCDHHDLGAL
                     GSALNTRALERQLEILKEMGVNAIRTSHNPPAPELLELADRMGFVVMDEAFDEWRRAK
                     KKNAYHLIFDDWHEKDLRAQIRRDRNHPAIILWSIGNEIGEQGSPEGHVLAATLTKIV
                     HEEDPTRPTTAAANNRNSGYNGFQKSVDVFGYNYQYADYGKFREANPLMPLFGNETAS
                     TVSSRGDYYFPVDADKSKGRADFQVSSYDLYAPRWAVPPDTEFEAQDRYSYVGGEFVW
                     TGFDYLGEPTPYDRDSTTLLEFSDPAAKERMAKELKDLGHIRVPSRSSYFGIVDLCGF
                     KKDRFYIYQARWRPDLPMAHILPHWNWPERVGLVTPVHVYTSGDEAELFLNGKSLGRK
                     KREQYQYRLRWDDVKYEPGELRVVAYKKGKRWAEDVMKTTGAVSKVALSADRTRIKAD
                     GRDLSFVTVRLIDTAGLLVPRSKN"
BASE COUNT          472 a          534 c          458 g          502 t
ORIGIN      
        1 gattctttga acgcggaaca agcagcccgg ccgtatcaat gagtcgaacg gtcacaaacg
       61 acaaatcgcg accatcggct ttgatccgtg tgcgatcggc actcaaagca acttttgaga
      121 cagcgccagt cgtcttcatt acatcttcag cccaacgctt tccttttttg tacgcaacca
      181 cacggagttc gcctggctcg tatttcacgt cgtcccagcg caaccgatac tggtactgct
      241 ctcgcttctt tctacctagt gacttgccat ttaaaaacaa ttccgcttca tcgcccgacg
      301 tgtaaacatg taccggcgta actagaccaa cacgctcagg ccagttccag tgaggcagga
      361 tgtgggccat tggtagatcg ggccgccaac gcgcctggta aatgtaaaag cgatctttct
      421 tgaacccaca aagatccact atcccgaagt aagaactgcg cgatggaacg cgaatgtgtc
      481 ccaggtcttt tagttctttt gccatccgtt ccttggcggc aggatcagaa aactcaagta
      541 gcgttgttga gtcgcggtcg taaggtgtag gttcgccaag gtaatcaaaa cctgtccaaa
      601 caaactctcc accaacgtag ctgtacctat cttgcgcttc gaactccgta tcaggaggaa
      661 ctgcccagcg gggcgcgtaa agatcgtagg aacttacctg aaaatccgcg cgacctttgc
      721 tcttgtctgc atcgaccgga aagtagtaat cgccgcggga actcactgtc gaggcagtct
      781 cattaccaaa caatggcatc agcggatttg cctcgcgaaa cttgccatag tcggcatact
      841 gatagttgta cccgaagacg tcgacgctct tttggaaccc gttgtagcca gaattgcgat
      901 tgtttgcggc agcagttgtt ggtcgagtgg gatcctcttc gtgaacgatt ttagtgagag
      961 tggccgccaa cacgtggcct tcaggacttc cctgctcacc aatctcgttt ccaatactcc
     1021 acagaatgat tgctgggtga tttcgatctc gacgaatctg tgctcgtaaa tccttctcgt
     1081 gccaatcgtc aaatatcaaa tggtaggcat tctttttctt tgcgcgacgc cactcgtcaa
     1141 aagcttcatc cattacgacg aaccccattc gatcagctaa ctcaagcaac tctggggcag
     1201 gcggattgtg actggtgcga attgcgttga cacccatctc cttgagaatt tcgagctggc
     1261 gttcgagtgc acgcgtgttg agagcagagc ctaacgctcc gagatcgtga tgatcgcaaa
     1321 cgcccttcaa ataaacatgc tccccgttta gataaaaacc ttctttctca tcaaacttga
     1381 ttgtccggaa tccaaagaca gtctcgtatt cgtcgatgac ttttccttgt tgctcaatcg
     1441 tggtgactac gacataaagg tttcgggcct ttagactcca cagtttcggg ctagcaacat
     1501 ttccgaccac ttgcgtcacc tgtacaccag ctgcaggtat gtcgacttcg ttccagccat
     1561 gcatgagagg gaggcccact cggtttcctc ttgggccgag ttggtaaacc tgtccaaaca
     1621 ctctcgcctt ttgtgcagtt gatgaatcgt tccgtacggt tattgtttgc tctacagttc
     1681 ccgctatctt gctgatgttc ggagtcgtta tgtacgttcc ccaattagcg acatgaaccg
     1741 gacttgtttt aactaaccaa acatttcgat acagcccgcc accgggatac caacgcgacg
     1801 agtcaggcgg attgtcgagt cgaatggcaa tcacattttc attgccaaac ttgaggtaag
     1861 gcgtcagatc gacttcgtac gacgcgtatc cgtaaggcca gcctccgacg aactgaccat
     1921 tcagccagat agatgaatac gccatcgcgc catcaagatg aagaaa
//
LOCUS       DATCGC010001190         1838 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_21036, whole genome shotgun sequence.
ACCESSION   DATCGC010001190 DATCGC010000000
VERSION     DATCGC010001190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1838)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1838)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1838
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21036"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(118..1509)
                     /locus_tag="VIJ87_11570"
     CDS             complement(118..1509)
                     /locus_tag="VIJ87_11570"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEY5445076.1"
                     /translation="MYFKQFYLACLAHASYLIGSDGEAAVVDPQRDVDDYINEANVHQ
                     LKIKYIIETHLHADFVSGHNELAERTGATIVFGAQAGVEFEHLAVKDGDEIKLGNLIL
                     RFMETPGHTPEGICLLVIDPSISDQPQKVLTGDTLFIGDVGRPDLAGGKGFTPQQMAE
                     LMYDSLHGKLLQLPDETEVYPAHGAGSMCGKNMSKETSSTIGEQRKFNYALKPMTKEQ
                     FVTMMTADLTEAPAYFPKDAEINRSGARELSELSPPKALTAEQAIAMPSAGQVVLDIR
                     SAELFGVGHLPGSINVGLGGQFAMWAGSLIPMNADLVIVAETSAQVDEAVVRLARVGI
                     ENVKGYVLGDVESWSREGLGVDRIKQLTVNDLNERSALDELQIIDVRRPGEYNNGHVP
                     RALNAPLSGIEKQISQLTVDKDKETFVICAGGYRSSAAASLMQKHGFTNLINVTGGTN
                     AWIGAGYPVETSE"
     gene            complement(1601..>1838)
                     /locus_tag="VIJ87_11575"
     CDS             complement(1601..>1838)
                     /locus_tag="VIJ87_11575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445077.1"
                     /translation="DPISGMHCWHQAVRVRAADTDDKPGDIFVDTEKSRTVYKKWLAM
                     TRPADKHSPDRTRRPYWMLRPLKPAREYYKLPEE"
BASE COUNT          413 a          505 c          449 g          471 t
ORIGIN      
        1 gctcggagcc actgttggga ggcgtccaaa tttccacttt gcccccttcc cagcttgttc
       61 gaaccattga ggcgtcttaa ccgcccttcc ccacttgttc ttaaaatagg agtgctacta
      121 ctcagaggtc tcgaccgggt agccggcgcc aatccacgca ttcgtgccgc cagtgacatt
      181 gatgagatta gtgaagccgt gtttttgcat gaggctggcg gctgcgcttg agcgataacc
      241 tccggcgcag atcacaaaag tttccttgtc tttgtcgacg gtcagttggc taatctgctt
      301 ttcgataccc gagagagggg cattaagcgc tcgaggaaca tgaccattgt tgtattcgcc
      361 aggtcgtcga acgtcgatga tctgtaactc atctaatgcg ctgcgttcat tcaaatcatt
      421 tactgtgagc tgtttgatgc gatcgacgcc aagcccttca cgtgaccagc tttcaacatc
      481 gccaagcaca taacccttaa cattttcgat accaacacgc gcgagtcgta caactgcttc
      541 atcaacctgc gcgctcgtct cagccactat taccaggtcc gcgttcatcg gaatcaaact
      601 cccggcccac atcgcaaact gaccaccaag tccgacgttg atcgatccgg gcaagtgtcc
      661 gacgccaaac aattcagcag aacgtatgtc aagaacaacc tgaccagccg atggcattgc
      721 tatggcctgt tcagcagtga gcgctttggg cggagagagt tctgacagtt cccgcgctcc
      781 agagcgattg atctccgcat ctttcggaaa atacgccggc gcttcggtca gatctgctgt
      841 catcattgtt acaaactgtt ccttcgtcat tggtttgagc gcgtagttaa atttgcgctg
      901 ttcgccaatc gttgatgacg tttctttcga catgttcttt ccacacatcg aaccggcacc
      961 atgggccggg tagacttccg tttcatccgg cagttgcaaa agtttgccgt gcaagctgtc
     1021 gtacataagc tctgccattt gctgcggcgt gaatcctttg cctcctgcga gatcggggcg
     1081 accaacatcg ccgatgaaca acgtgtcgcc ggtcaaaact ttctgtggtt gatccgaaat
     1141 cgatggatcg atcaccagca aacaaatgcc ttcaggtgtg tggcccgggg tttccataaa
     1201 gcgcaggatc aggttcccaa gtttgatttc atcgccatct ttcaccgcga gatgctcgaa
     1261 ctcgacaccg gcttgagcac caaagacgat agttgctccg gttcgttctg cgagttcgtt
     1321 atgaccactt acaaagtcgg cgtgcaggtg tgtttcgatg atgtacttga tcttgagctg
     1381 gtgcacgttt gcctcgttga tgtaatcgtc aacgtcgcgt tgcggatcaa caaccgcagc
     1441 ttctccgtcc gaaccaatca gatacgaagc atgagcaaga caggctaaat aaaattgttt
     1501 gaagtacatg ttctaaatgt ccgataggct ttagcttgtc gtgagctcta tcaagggtac
     1561 tcttagctgg atcacgacaa gctaaagcat atcggacaac tcactcctct ggcagtttgt
     1621 agtattccct tgcgggcttg agcggacgta gcatccaata cggccgacgc gtcctatcgg
     1681 gcgaatgctt gtcggcaggt cgggtcattg ccaaccactt cttgtaaaca gtgcgcgact
     1741 tctcggtatc aacaaaaata tcgccaggct tatcgtctgt gtcagctgcg cgcactcgaa
     1801 ccgcctggtg ccaacagtgc atccccgaaa tcggatcg
//
LOCUS       DATCGC010001191         2275 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_250298, whole genome shotgun sequence.
ACCESSION   DATCGC010001191 DATCGC010000000
VERSION     DATCGC010001191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2275)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2275)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2275
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250298"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..927
                     /gene="sbnA"
                     /locus_tag="VIJ87_11580"
     CDS             <1..927
                     /gene="sbnA"
                     /locus_tag="VIJ87_11580"
                     /inference="COORDINATES: protein motif:HMM:TIGR03945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diaminopropionate biosynthesis protein SbnA"
                     /protein_id="HEY5445078.1"
                     /translation="RLRTFAGLHDVFLKLEGFNVTGSIKIKTAVGLLEDLEKRGLAIP
                     GKTVIVESSSGNLGLALSFLCGVKGYKFICVTDPNANHASVREMELHGAEVIVVSDRD
                     SAGGFLGTRLKVIDNILCSDPNAVWLNQYANIANKNVHAEQTGKEIAAEFERVDWLFV
                     GTGTTGTLCGVSERLRQEFPKIKVVAVDPVGSVTFGGKPGRRTIPGIGTSVRPKLADY
                     LTPDRVVEISEEETIESCFAFVRDYHLLVGGSTGTVLAAIQQLAPEFNAEETIVAISP
                     DLGERYLDTVYKKAECESLVVTEEIAECALVG"
     gene            938..1954
                     /gene="sbnB"
                     /locus_tag="VIJ87_11585"
     CDS             938..1954
                     /gene="sbnB"
                     /locus_tag="VIJ87_11585"
                     /inference="COORDINATES: protein motif:HMM:TIGR03944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diaminopropionate biosynthesis protein SbnB"
                     /protein_id="HEY5445079.1"
                     /translation="MAAAPTFYVVPGSTVKNIIDDHRDQVFAAVEYAYRLHSSGDAVN
                     PDSYFLRYSHKPNARIIALPAHLGGSVQKSGIKWISSFPDNRTTNLARASAVLILNDA
                     ATGYPLACLEASLISATRTAASAALAAEKLSPNPFEGTLCVIGTGVIARTTIEWLLFR
                     KWNFRKISLYDLDRKEAEHLSNWLRDQHNIKADIRDSFEDAVRDASLVLLTTTASEPY
                     LADEKLFAHAPTVLHLSLRDICVNVILEAQNIVDDVDHCLKANTSLHLTEMASGNRDH
                     VSGSLVDVLEKRVKLDFGRPRIFSPFGLGVLDLAVGNLVLEKAISSDVAISFPNFFSN
                     SARW"
     gene            1986..>2275
                     /locus_tag="VIJ87_11590"
     CDS             1986..>2275
                     /locus_tag="VIJ87_11590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445080.1"
                     /translation="MNGQQQVIHGQQAGRHIMAAVWSCNEWDQLEEVIVGNPLKARFP
                     TPDLSTQLAEFPDRSIAEIPRGPFPQQIIEETEEDLNEFVGILERLGITVKRP"
BASE COUNT          587 a          549 c          579 g          560 t
ORIGIN      
        1 cgtctccgta cttttgctgg tcttcatgac gtatttctaa agttggaagg attcaatgtt
       61 accggttcga tcaagataaa gacggctgta ggtcttcttg aggacctgga aaaacgaggt
      121 cttgctatac cgggcaagac agtaatagtc gaatcgtcat ctggaaatct tggtttggcg
      181 cttagttttt tatgtggggt caaaggttac aagttcatct gcgtaacaga cccaaacgcc
      241 aatcacgcca gtgtaagaga gatggaactt catggagcgg aagttatagt cgttagcgat
      301 cgtgattccg cggggggatt cctgggtacc agactcaaag taatcgataa cattctttgt
      361 tctgatccga acgcagtttg gctcaatcaa tatgccaaca tcgctaacaa gaatgttcat
      421 gccgagcaaa ccggaaaaga gatcgcggcc gagttcgaga gagtcgattg gctttttgtt
      481 ggcaccggca ctacgggtac cctctgcggc gtatccgagc gacttcgtca agagtttcca
      541 aaaattaaag tcgtagcagt cgacccggta ggctcagtca catttggtgg aaagcctggc
      601 cgacgaacta tccccggcat cggtactagt gtgagaccca aacttgcgga ctatctaact
      661 cccgacaggg ttgtggaaat aagcgaagaa gaaacgattg agagttgttt tgctttcgtt
      721 cgagattatc acctacttgt tggaggaagc accggaaccg tcctcgcagc aatccaacag
      781 ttagcacctg aattcaatgc ggaagaaacc atagtcgcca tctctcccga tcttggcgaa
      841 aggtacctgg acactgttta taaaaaagcg gaatgcgaga gccttgtggt cacagaagaa
      901 atagccgagt gcgcgcttgt cggataggag agaagtgatg gcggccgctc caacgttcta
      961 cgttgtaccc ggttcgacag ttaagaacat aattgacgac catagagatc aggttttcgc
     1021 tgctgtagag tacgcctatc gtcttcactc ctccggagat gctgttaatc cagacagcta
     1081 cttcctccga tattcgcata agccaaacgc tcgcatcatt gcgctaccgg cacatctcgg
     1141 cggttcggtg caaaagagtg gcattaaatg gatatcgagt ttcccggaca acaggaccac
     1201 taacttagcg cgagcttctg cagtcctgat cttaaacgac gcagcgacag gttatcccct
     1261 ggcatgtctc gaggcgtcac tgatcagtgc aacgcgtact gccgcatcgg ccgcgttggc
     1321 agcagaaaaa ctttccccta atccctttga gggaacactc tgcgtgatcg gaaccggagt
     1381 gatcgctaga acaaccatcg agtggcttct atttaggaaa tggaactttc gcaagatcag
     1441 tttgtatgat ctcgatcgca aggaagctga gcacctcagc aattggcttc gcgatcaaca
     1501 caacatcaag gcagatattc gagacagttt tgaggatgct gttcgcgacg cctccctggt
     1561 acttctcacc accacggcct cagagcctta tcttgccgat gaaaaacttt tcgcacatgc
     1621 gccaactgtc ctacatctat cgcttcgcga tatttgcgtg aatgtgattc tcgaagcgca
     1681 aaacattgtc gatgatgtag accattgcct gaaggcaaac acatcacttc atctgacaga
     1741 aatggcgtcg gggaataggg accatgtatc gggtagcttg gtggatgtcc tggagaagag
     1801 ggtcaaacta gattttggca ggccgcgcat attttcaccc tttgggctgg gtgttcttga
     1861 tcttgcggta ggcaatcttg ttcttgagaa agcaatctcg tccgacgtcg caatctcgtt
     1921 tcctaacttc ttcagcaatt ccgcccgatg gtgaattaat tttggctgtg tgaagtggag
     1981 accttgtgaa cgggcaacag caggtcattc acggacagca agcagggaga cacatcatgg
     2041 cagctgtatg gagttgcaac gaatgggatc aattggaaga agtcattgtc ggcaatccgc
     2101 tcaaggcgcg attccctacc cctgacctca gcactcaact cgcagagttt cctgatcgtt
     2161 caatagccga aattccgcgc ggaccttttc cccaacagat cattgaagag accgaagagg
     2221 atctgaatga atttgtcggg atcttggaaa gattggggat caccgtcaaa cgccc
//
LOCUS       DATCGC010001192         1184 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_349904, whole genome shotgun sequence.
ACCESSION   DATCGC010001192 DATCGC010000000
VERSION     DATCGC010001192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1184)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1184)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1184
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_349904"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..798)
                     /locus_tag="VIJ87_11595"
     CDS             complement(<1..798)
                     /locus_tag="VIJ87_11595"
                     /inference="COORDINATES: protein motif:HMM:NF024803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5445081.1"
                     /translation="MKDQSTKVISFPSPVPLKADYQRVKSSYSIKEIKQLFGLSEKTI
                     RRWTEQGIIQASTPSQTADFTYDFQALTQFRRVRELRSQGHSIRQIEAELQGQLSLFR
                     PETSRIARLLTPFEEALLLHEQGDPTAAEHYVEAIGEGDNVAEAYCNLGIINLERGET
                     TKALDNFTLSLKNDPRHVEAHYNLANLYYDAGDLQLAKLHYEAAAQVEPGFSLVYFNL
                     SLVYHKLGDLAAASATLEKYQQLEPEDEDIEVLNQILKAMQVGLALEK"
     gene            complement(828..>1184)
                     /locus_tag="VIJ87_11600"
     CDS             complement(828..>1184)
                     /locus_tag="VIJ87_11600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445082.1"
                     /translation="LENVKNLTPQKLNKNELKLAATLVQEMVTTLGEIDTEDNYHTAL
                     RNLIDAKIKGRKVVEVEEVEELPRLDIMSALKKSLQQSNRKPMVKAPATAAAKKKPQI
                     TLVKSKTTTAKKRKAS"
BASE COUNT          245 a          285 c          306 g          348 t
ORIGIN      
        1 cttctcgagg gccagcccaa cctgcattgc cttcagaatc tgattcagca cttcgatatc
       61 ttcatcttcg ggttcgagct gctgatactt ctccaaggtt gcggaggcag cggcgaggtc
      121 gcccagtttg tgatagacca gcgagagatt gaagtagaca agcgaaaagc caggctcaac
      181 ttgcgcggct gcttcatagt gaagcttggc aagttgtaga tcaccagcgt cgtagtagag
      241 attcgcgaga ttgtagtgag cttcaacgtg acgcggatcg ttcttgagag acagggtgaa
      301 gttatcgagt gccttggttg tttcaccacg ctcgagattt atgatgccaa ggttgcaata
      361 agcctccgct acgttgtcgc cttcgccgat agcctcgacg taatgttctg ccgccgttgg
      421 atcaccctgc tcgtgaagca ataaggcttc ttcaaacgga gtgagcagtc gtgcgattcg
      481 agaagtctca gggcgaaaca aactcaactg accctgaagc tccgcttcga tctgccgaat
      541 gctgtgacct tgtgaccgca gttcacgtac acgtctgaat tgagttagcg cctggaagtc
      601 gtacgtgaag tcagcagttt gcgatggtgt cgaggcctgg atgattcctt gttcggtcca
      661 gcggcgaatt gtcttctcgc tcagaccgaa taactgcttg atttccttga ttgagtagga
      721 tgatttgaca cgttggtaat ctgcctttaa agggacaggt gaggggaacg agattacctt
      781 agtgctttgg tctttcattt attggcgaac aaacaagtca gcgaacctta tgacgctttt
      841 cgcttttttg ctgtcgtcgt cttcgacttc accagcgtga tctgcggttt cttcttagcc
      901 gcggctgttg ccggtgcttt aaccattggt ttgcgattcg attgctgcaa actcttcttc
      961 aacgcactca tgatatcaag tcttggtagt tcttcaactt cttcaacttc gactaccttg
     1021 cgtcccttga tcttggcgtc gataaggttg cgaagcgctg tgtggtaatt gtcttcagta
     1081 tcgatctcgc cgagcgtcgt taccatttcc tgcaccaacg ttgccgcgag cttgagttcg
     1141 ttcttgttaa gtttttgcgg cgtcaaattc ttaacgtttt ctag
//
LOCUS       DATCGC010001193         1224 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_250300, whole genome shotgun sequence.
ACCESSION   DATCGC010001193 DATCGC010000000
VERSION     DATCGC010001193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1224)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1224)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1224
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250300"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1185)
                     /locus_tag="VIJ87_11605"
     CDS             complement(<1..1185)
                     /locus_tag="VIJ87_11605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445083.1"
                     /translation="MDESIYPNKLGSYSKGLPHNNDGTVVLSAYQAMLQALNSGNPTD
                     FDVIPMGGDRKLTNPQSGLAFDMEGADAHSLVQLPAPAFASREQAAEISENYWMALLR
                     DVPYSDYSVNPIANAAAADLSIYGSDFKGAKTGGVVTTATLFRGLTPGDKAGPYLSQF
                     FYQNCNFGANKLEQKITTSMPGLDYMTDFNTWLAVQRGFNQPPDVLDPTPRYMRNGRN
                     IGQWVHIDVLFQAYFHAFLVLAGAGAPFDDGNPYNANPTQIGFGTFGGPHIATVLCEV
                     ATRALKAVWFQKWYVHRRLRPEVHAERVDRTLYHGAGYPVHPEVLTSLSSGSRLGGYM
                     PAGNALLPMAFPEGSPTHPAYGAGHATVAGACVTILKAWFKESTNLVDIGLTPLQPST
                     DGL"
BASE COUNT          267 a          320 c          340 g          297 t
ORIGIN      
        1 caatccatcc gttgatggtt ggagcggagt aagtccaatg tcgaccaggt tcgtgctctc
       61 cttgaaccac gctttgagga ttgtgacaca tgctcccgca actgttgcgt gtccggctcc
      121 atacgcggga tgtgtcggag atccttcggg aaaggccatt ggtaataacg cgttgccagc
      181 tggcatgtag ccaccaagtc ggctgccact actcaacgac gtgagcactt caggatgaac
      241 cgggtagcca gctccgtgat agagggtgcg atcgactcgt tctgcgtgaa cctcgggcct
      301 taaccgccgg tgcacatacc atttttgaaa ccataccgcc ttcaacgccc gggtggcgac
      361 ttcacacaag acagttgcga tgtgtggtcc accaaacgta ccaaaaccaa tttgagttgg
      421 attagcgttg taaggatttc cgtcgtcaaa cggcgctcct gcacccgcga gcacaaggaa
      481 cgcgtggaag tacgcctgga aaagaacgtc gatgtgaacc cactgtccga tgtttcgtcc
      541 attgcgcatg taccgtggag ttggatcaag cacatcggga ggttgattga atccgcgttg
      601 cactgctagc caggtgttga aatccgtcat gtaatcaaga cccggcatcg atgttgtaat
      661 cttttgctcg agcttgttcg ctccaaagtt acagttctga tagaagaact gcgataggta
      721 tggtccagcc ttgtctcccg gcgtgagtcc gcgaaagaga gtggccgttg ttacgacgcc
      781 accagtcttg gcgcctttga aatcacttcc atagattgac agatccgcgg ctgcagcatt
      841 cgcaatcgga ttcaccgagt agtctgagta cgggacgtcg cggagcaaag ccatccaata
      901 gttttcggaa atctccgctg cctgctcacg acttgcgaag gcaggcgccg ggagctgcac
      961 gagcgaatgc gcgtccgcac cttccatgtc aaaggcgagt cccgattgcg gattggtaag
     1021 tttgcgatca ccacccatgg ggatgacatc gaagtccgtc gggtttccac tgttgagggc
     1081 ttgcaacatt gcctgataag cacttaagac aactgtgccg tcgttgttgt gcggcagtcc
     1141 ctttgaataa ctcccgagct tgtttgggta gatgctctca tccacattgg ctgggtgttg
     1201 taagtttggc ggtgtagctt tgct
//
LOCUS       DATCGC010001194         1354 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_85513, whole genome shotgun sequence.
ACCESSION   DATCGC010001194 DATCGC010000000
VERSION     DATCGC010001194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1354)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1354)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1354
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85513"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(215..>1354)
                     /locus_tag="VIJ87_11610"
     CDS             complement(215..>1354)
                     /locus_tag="VIJ87_11610"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEY5445084.1"
                     /translation="DSFVLIVVRSSWGNERYFKMSVAVITGSAGLIGSETVRFLHAKG
                     MEIVGIDNNMREYFFGADASTRWNTTRLQEDLRNFRHYPIDVRDERAVDSLFAERGNA
                     ISLVVHTAAQPSHDWAAREPFTDFTVNANGTLTLLEATRRYAPDAAFIFTSTNKVYGD
                     TPNNLPLVEKETRWELDEAHPYYEFGIDETMTLDQSKHSLFGASKVAADILTQEYGRY
                     FGLKTVAFRGGCLTGPAHSGAELHGFLAYLVRCALSEKPYTIYGYKGKQVRDNIHSYD
                     LVNAFWHYFQNPIPGAVYNMGGSRHSNCSMLEAIDYTEELTGKKLLYSMSEQARSGDH
                     IWWISDVRKFQRDYPEWNYKYDLQLIIAEIVEATKERVKHAAIPL"
BASE COUNT          328 a          351 c          330 g          345 t
ORIGIN      
        1 aatgcccgct gccaataatc tgctttcccg cgttccgctg ttgcggcgta tcggtcaatg
       61 gccgagctgt tggtggacct cggcgcgaga ccacttgctg gttacgctaa cgaaagagaa
      121 tgttgaagat tcacaaccgg accagggtta aacggaaggt tccgagctta gtcacctctt
      181 tgcaaatccc aggacagtaa aagctgaagc gaatttagag cggtattgcc gcgtgcttca
      241 cccgttcctt agtcgcttcc actatctcgg caataatcag ctgaagatcg tatttgtagt
      301 tccactcagg atagtcgcgt tgaaatttgc gcacatcgct aatccaccag atatgatcgc
      361 ccgaacgcgc ttgctcagac atgctataga gaagcttttt cccggttagt tcttctgtat
      421 agtcgattgc ttccaacata gaacaattgc tatgtcgtga accacccatg ttatagacgg
      481 cacctggaat cgggttctga aagtaatgcc agaaagcatt taccagatcg taggaatgaa
      541 tgttatcgcg gacctgtttt cccttgtagc cataaatcgt gtagggcttt tcagaaagag
      601 cgcaccgcac caggtaggcg aggaagccgt gcaattcggc tccggaatga gctggtccag
      661 tcaaacaacc gcctctgaat gcaactgtct tgagaccgaa gtagcgaccg tactcctgcg
      721 ttaggatgtc agccgcaacc ttgcttgctc caaagagact atgctttgac tgatcaagtg
      781 tcatagtctc atcgatacca aactcgtaat aaggatgagc ttcgtccaat tcccagcgcg
      841 tttctttctc caccagaggt aaattgtttg gcgtgtcgcc gtagactttg tttgttgacg
      901 tgaaaatgaa cgccgcatcc ggagcgtaac gccgcgtcgc ctcgagcagg gtcagtgttc
      961 catttgcgtt aacagtgaag tcagtgaaag gttcacgcgc cgcccaatcg tgactgggtt
     1021 gcgccgctgt gtggacgacg aggctaatcg cgtttccgcg ctcggcaaat agactgtcaa
     1081 cagcccgctc gtctctcaca tcaatcggat agtgtctaaa gttccggaga tcttcctgca
     1141 gccttgtagt attccatctc gtcgaggcgt ctgcgccgaa aaagtattcc cgcatgttat
     1201 tgtcgatgcc aacaatctcc atccccttgg cgtgaagaaa acgcacggtt tcgctgccga
     1261 ttagaccagc tgatccggtt attactgcaa cagacatttt gaagtacctt tcattccccc
     1321 atgatgaacg aactacgatt aggacgaaag aatc
//
LOCUS       DATCGC010001195         2020 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_349936, whole genome shotgun sequence.
ACCESSION   DATCGC010001195 DATCGC010000000
VERSION     DATCGC010001195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2020)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2020
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_349936"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1816
                     /gene="ppdK"
                     /locus_tag="VIJ87_11615"
     CDS             <1..1816
                     /gene="ppdK"
                     /locus_tag="VIJ87_11615"
                     /EC_number="2.7.9.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050242 - pyruvate, phosphate dikinase
                     activity [Evidence IEA];
                     GO_process: GO:0015976 - carbon utilization [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="pyruvate, phosphate dikinase"
                     /protein_id="HEY5445085.1"
                     /translation="QLRKELPEVYDQFASIAGLLEQHYHDMQDCEFTIERGKLWMLQT
                     RTGKRSGAAAVRVAVEMVYEKLIDKKTAVQRVTPEQLDQLLHPTVDPKTKATVLATGL
                     PASPGAAQGQVVFSPDEAEEMAREGAKVVLVRLETSPDDFHGMVAAQAIVTARGGMTS
                     HAAVVARGMGKTCVSGANAINVDYSQQQFTVDTTVVTKGEWITVDGSTGRVFLGQVPT
                     IQPTLESDFYKLMTWADEFRRLRVRANADTPLDAKTARQFGAEGIGLCRTEHMFFGDQ
                     RLAAMREMILAEGVGAREKALEKLLPLQRGDFIGIFREMAGLPVTIRLLDPPLHEFLP
                     NAEELTTELADLKMALKKADSLTDMDHVLDEIDHKRALLRQVNRIREANPMLGFRGCR
                     LGLLFPEVTRMQCRAIFEAACQVQGERSKVELEIMVPLVSLSEELRQQAELIHEVARQ
                     VMGENGMTIEYMVGTMIELPRAALTADRIAQHAQFFSFGTNDLTQTTFGLSRDDSSRF
                     LPNYIERKIVRDDPFQVLDRDGVGQLVRIGTERGRSVKPELKVGICGEHGGDPQSIAF
                     CNEIGLDYVSCSPFRVPVARLAAAQAALNTEETISSQV"
BASE COUNT          482 a          489 c          586 g          463 t
ORIGIN      
        1 ccagctgaga aaagaactac ccgaggtcta cgatcagttt gcctcaatcg ctggactgct
       61 agaacagcat taccacgaca tgcaagactg cgagtttacc atcgaacgcg gcaagctttg
      121 gatgctacag actcgcaccg gcaagcgtag tggcgcagcg gccgttcgtg ttgctgttga
      181 gatggtttac gaaaaactga ttgacaagaa gaccgcagtt caacgagtaa ctcctgaaca
      241 actcgatcaa ctactgcatc cgactgtcga tccgaaaact aaggcgacgg ttctggcaac
      301 tggtttaccg gcgagtccag gcgccgcgca gggccaggtt gtttttagtc cagacgaggc
      361 tgaagaaatg gcccgggagg gcgcaaaggt tgtgctcgtc cgtttggaaa ccagtcctga
      421 tgatttccac ggcatggttg ccgcccaggc gatcgtgacg gctcgtggtg gcatgacgag
      481 tcacgccgca gtcgttgctc gcggcatggg caagacatgc gtgagcggcg ctaacgcaat
      541 aaacgtcgac tacagtcaac aacaattcac cgtcgatacc acggtagtga cgaagggaga
      601 atggattacg gtcgatggtt ccactgggcg tgtttttctc ggtcaggtgc cgacgattca
      661 accgacgctg gaaagcgatt tctacaaact aatgacgtgg gctgatgagt ttcggcgatt
      721 gcgagtcaga gctaatgctg atactccgct ggacgcgaag acggcgcgac agtttggagc
      781 agaaggcatt ggcttgtgtc gtactgaaca catgttcttc ggtgatcagc gattggcagc
      841 catgcgagaa atgattttgg ccgaaggtgt gggcgctcgt gaaaaagcat tggagaaatt
      901 gctgcccctt cagcgcggcg acttcatcgg catctttcgc gaaatggctg gactgccggt
      961 aacaattcga ctgctggatc cgccacttca cgagtttttg ccaaatgctg aggaactaac
     1021 tactgagttg gccgacctca agatggcgct aaagaaagcc gattcgttaa ctgacatgga
     1081 tcatgtgctc gacgagatcg atcacaaacg ggcgttgctt cgccaggtta atcgcattcg
     1141 cgaagcaaac ccgatgctag ggttccgggg ttgtcgtctt ggtctcctgt tccctgaggt
     1201 cacgcgcatg cagtgtcgtg cgattttcga agcggcgtgt caggtccagg gtgagcggag
     1261 caaggtcgag ttggaaatca tggtgccgtt ggtgtcgttg agtgaagagt tgcgacaaca
     1321 agcggaacta attcatgaag tggcgcgcca ggtaatgggg gagaacggca tgacgatcga
     1381 atacatggtg ggaaccatga tcgaattgcc tcgcgcagcg ctgacggcag atcggattgc
     1441 ccagcatgca cagttctttt cgtttggcac aaacgatctc acccaaacga catttggttt
     1501 aagccgagat gactccagtc gttttctacc gaattacatt gaacgaaaaa tcgtgcgcga
     1561 tgatccgttt caggttctgg accgagatgg cgtcggtcag ctggttcgca ttggcaccga
     1621 acgcggtcgg agcgtgaagc cagagctcaa agtcggtatc tgcggcgaac acggtggcga
     1681 tcctcaatcg atcgcgttct gtaacgagat tgggttggac tacgtcagct gttcaccgtt
     1741 ccgagttccg gtggcgcgtt tggctgcggc gcaggcagca ttgaataccg aagaaacgat
     1801 cagctcgcag gtctagaatt gtccgatatg ctttagctgg tcgtttccgg aaagaattta
     1861 gccacagatt tacgcagata agcacagatc agaagttgag aagtattgtt ccaatctttt
     1921 ctgatctgcg tttcgtccgc gtagatctgc ggctaaacct ttctaccaaa acgaccagct
     1981 aaagcatatc ggacaattct agacctgcga gctgatcgtt
//
LOCUS       DATCGC010001196         1282 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_283697, whole genome shotgun sequence.
ACCESSION   DATCGC010001196 DATCGC010000000
VERSION     DATCGC010001196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1282)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1282)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1282
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283697"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1282
                     /locus_tag="VIJ87_11620"
     CDS             <1..>1282
                     /locus_tag="VIJ87_11620"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY5445086.1"
                     /translation="TVGGAQRMLDVWCSHEAHRWDTHILTVGARGLFAFAGATVHSEL
                     ASSEIMGLIETLQPELLVHHEPSDQNGILTSCPQVWILHCTNSLQSLPPKHARPAGVF
                     SNFDSNQIHSGWRQLSLKVLPLQIDSGEFRPTSLQHDGLICGIVGRLHEDKVPRSFIE
                     AVLTWEPGPWRIRFIGHGLDTGYQRFAKEKLVNLQWVEFAGDVMPNKMPSALRKLDAV
                     LIPTDATQGETGSYSALEAMATGLPVIARDLPGLKYNCGDGPMYANEDTELLARLREL
                     DSSEPRSKAASRSRKLVLNKYDVTKHAATHSAGFSAALCCEISILMPVFDTPATYLAE
                     CWDSIQAQTFREWELVLVDDGSRAAETIEELDRIAEDPRVVLIRLDENQGIAPALNVG
                     LSRCRGKLVARMDSDDKMMPTRLERQFAYMQTHSE"
BASE COUNT          300 a          322 c          356 g          304 t
ORIGIN      
        1 accgtcggcg gcgcccaacg catgctcgac gtgtggtgtt cgcacgaagc ccatcgctgg
       61 gatacgcata ttctcacggt cggtgcgcgc ggtctgtttg ctttcgccgg cgccaccgtc
      121 cattccgaat tagccagttc ggaaatcatg ggtctgattg aaactttgca accggagttg
      181 ttggtacatc acgagcccag tgatcagaat ggaatcctta ccagttgccc tcaagtttgg
      241 atcttgcact gcacgaattc tctgcaatcg ttgccaccaa agcatgcgag acctgcaggg
      301 gtgttctcga attttgactc aaaccagatt cattcaggtt ggcggcagtt gtcgctcaaa
      361 gtgttgccac tccaaatcga ttctggtgag tttcgtccaa ccagccttca gcatgatggt
      421 ctcatatgcg gcattgtggg ccgcctacac gaggacaaag tcccacgctc tttcatcgaa
      481 gcggttctga catgggaacc aggtccctgg cgaattcgct ttatcggtca cggactcgat
      541 acgggttatc agcgattcgc gaaagaaaaa cttgtgaact tgcagtgggt cgaatttgcg
      601 ggcgatgtga tgccgaacaa gatgccttca gccttgcgca agttagacgc agtgctgatt
      661 cccaccgacg ctactcaagg agaaactgga tcgtatagcg cactggaagc gatggccacg
      721 gggctacctg tgatcgctcg agacctgcca ggtctaaagt acaactgtgg cgatgggcca
      781 atgtacgcga acgaggatac cgaactcctc gctcggcttc gtgagttgga tagttctgag
      841 ccacgctcca aggcggcgag cagatcgcgc aaattggtcc ttaacaaata cgatgtaact
      901 aaacatgccg cgactcatag tgcgggtttt tcggcagcac tgtgttgcga aatttcaata
      961 ttgatgccgg tgttcgatac gccggctacc tacctggctg agtgttggga ctcgatacaa
     1021 gctcaaacgt ttcgcgagtg ggaacttgtt ttagtggacg acggatcgcg agcggccgaa
     1081 acaatcgagg aacttgatcg gatcgcggaa gatccgaggg tcgtcctgat acgactagat
     1141 gaaaatcaag gaattgctcc agctcttaac gttggattga gtcgatgtcg aggaaagttg
     1201 gtggcccgga tggactccga cgataagatg atgccgacgc gattagaacg ccaatttgct
     1261 tatatgcaga ctcactctga ag
//
LOCUS       DATCGC010001197         2668 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_184173, whole genome shotgun sequence.
ACCESSION   DATCGC010001197 DATCGC010000000
VERSION     DATCGC010001197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2668
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184173"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(95..985)
                     /locus_tag="VIJ87_11625"
     CDS             complement(95..985)
                     /locus_tag="VIJ87_11625"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY5445087.1"
                     /translation="MSQANAQLKERVRQFWQEHPCGTKFADAPPGSRRFYELVEEHRY
                     SKEWHIPGAAGFSETKNLRVLEIGCGLGTDGAQFAKAGADYTGVDLTDAAVELAQKRF
                     ELFGLPGTFRTADAERLDFPDDSFDIVYSHGVLHHTPDTAGAVKEVHRVLTPGGRAVV
                     MLYHRDSYNYRVNISVLRRGGVHMLRWNSGVKLVRLLTGESEEALREHARRLKKEREY
                     LSSEEFLSQNTDGAGNPLARVYSKREARELFKDFSEVEFRVHFLNKKWLPVFGPLLPR
                     SIETRLASRWGWHLWVYGRK"
     gene            1219..2490
                     /locus_tag="VIJ87_11630"
     CDS             1219..2490
                     /locus_tag="VIJ87_11630"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sorbosone dehydrogenase family protein"
                     /protein_id="HEY5445088.1"
                     /translation="MTTPKLLTIRTTTLLAGLFLTINAFAQSSGTGSASSVLTTNNPL
                     AHYEIKPSDLPPPKIEDDVNNGPRVISQPSDAKLNVPPGFQVSTFAEGGFTRPRWLAL
                     APNGDVFVADSMGGKIFVLRDVNKDGVAEERSVFLEGQKQPFGIAFWKDYIYIGNTDA
                     IVRYGYKPGQMKATGEAEKIATVPGQGYREHWTRNILFSPDGKKMYVTVGSESNVSVE
                     PEPMRASITEFNPDGTGKRIYASGTRNPIGLAWLPGTRTMWAAVQERDRLGDDLVPDF
                     VTEIKDGGFYGWPYGYLGVEDPRRKGERPDLVKQTITPNVLIQAHSAILGMVFYQGRM
                     FPNEYRGDAFVALHGSWNRTQRTGYKIIRIRFKNGKPVGGYDDFLTGWMFGPDKREVW
                     GRPVGLLVLPDGSMLIADDGANKIWRVSYKK"
BASE COUNT          668 a          712 c          673 g          615 t
ORIGIN      
        1 cgaccctggc tgacttagca ggcgaggacg cctgcggtcc cagaagagcg cgcccgacaa
       61 cacaaagtag ctactaaagg gtgtcggatt cttactactt ccttccatat acccacaaat
      121 gccagcccca acgcgaagcc aggcgcgttt caattgaacg gggaagcagc ggtccgaaaa
      181 cgggtaacca tttcttattc aaaaagtgga ctctgaattc cacttccgaa aagtctttga
      241 acaactctcg ggcttctcgt ttggaataaa ctcgcgcaag tggattaccc gcaccgtctg
      301 tgttctgact gagaaactct tcggagctta gatattcgcg ctccttcttg agacgcctgg
      361 catgctcgcg caacgcttct tccgattcac cggtcaacag tcgcaccaac tttactccgc
      421 tattccagcg cagcatatgg acaccaccac gtctcaagac cgaaatgttt actcgataat
      481 tgtaagagtc gcgatgataa agcatcacca ccgcccgccc acctggtgtc aaaacacgat
      541 ggacttcctt gaccgctcca gctgtgtcag gagtgtggtg caacacgccg tgcgagtaaa
      601 cgatatcgaa cgaatcatcc ggaaagtcga gtcgctcggc gtcggcagtg cgaaacgttc
      661 ctggcagccc gaacaactca aaacgcttct gagccagttc aactgcggcg tcggttaagt
      721 caacccccgt gtagtcggca ccggctttcg caaactgggc tccgtctgta cccagaccac
      781 atcctatctc aagcacgcgt aggttcttcg tttccgagaa accagctgca ccaggaatgt
      841 gccactcctt tgagtagcga tgttcctcga cgagttcata aaagcgtcgt gagcccggcg
      901 gagcgtcagc aaactttgtc ccgcatgggt gctcctgcca gaactgtcga acccgttcct
      961 taagttgtgc gtttgcttgc gacatttcga aagcacagaa gaatagctta tttgccaacc
     1021 acgcgtcaca acgtcacccg atgtccgata tgcttcagct tgtcgatgac ttgagaatga
     1081 attcagccgc aaattaagag gggcgtgcat ccgcgcttat ctgcggctga aatttttgct
     1141 gagtcatcga caagctaaag catatcggac atcgaagcgc ttgcacatcg gccagtcatg
     1201 tggcgaaata cgattacgat gacaactcca aaactgctca cgattagaac aacaacgctt
     1261 ctcgctggtc tgtttttaac catcaacgct tttgcacaat cttccggcac cggatcagct
     1321 tcttctgttc tgactacgaa caatccgttg gctcattacg agatcaagcc ttcagatcta
     1381 ccgccgccaa agatcgagga cgacgttaac aacggcccac gcgtaatctc tcagccttcg
     1441 gatgcgaaac taaacgtgcc gcctgggttt caagtctcaa catttgcgga aggcggattt
     1501 acacgccctc gctggctggc actcgcgccg aatggtgacg tcttcgtcgc cgattcaatg
     1561 ggcggcaaga tctttgtcct gcgcgatgta aataaagacg gcgtcgccga agaacgttca
     1621 gtgtttcttg aaggacaaaa gcagccgttc ggtatcgcgt tttggaaaga ctacatctac
     1681 atcggcaaca cagacgccat cgttcgttac ggctacaaac ccggacaaat gaaagcgact
     1741 ggtgaagcag agaagatcgc taccgtgccc gggcaaggtt atcgcgaaca ctggacgaga
     1801 aacatactgt tcagtcccga tggcaaaaag atgtacgtga cagttggttc ggaatctaac
     1861 gtcagcgttg aacccgaacc catgcgcgca tcgattaccg agttcaatcc cgatggtacg
     1921 ggtaaacgca tctatgcttc gggcacacgc aatccgatcg gtctcgcctg gttaccaggc
     1981 acaaggacga tgtgggcagc tgttcaggaa cgtgatcgac tcggcgacga tcttgtgccc
     2041 gacttcgtta ccgagatcaa agatgggggc ttttatggtt ggccttatgg ctatctgggt
     2101 gtggaagatc ctcgccggaa aggcgaacga ccggatctcg tgaagcagac aattacgcca
     2161 aacgttttga ttcaagccca ctctgcaatc ctcggaatgg tcttctatca aggtcggatg
     2221 tttccaaacg agtatcgggg tgatgcgttt gtcgcgttgc acggttcatg gaaccgaaca
     2281 caacgcaccg gttacaagat tattcgcatt cgattcaaga acgggaagcc agttggtggc
     2341 tacgatgatt ttctgactgg ttggatgttt ggaccagaca agagagaagt gtggggcaga
     2401 cccgtcggat tgttagtgtt gcctgatggc tcgatgctca ttgccgacga tggcgccaac
     2461 aaaatctggc gcgttagtta caagaagtga gtggagtgac cagcgctgag cagttggatc
     2521 atcaaaaaga acaagttggg aagcgtggca agcagatgtc cgataaactt tagtttgtcg
     2581 ttgtgaacca cctcgcaggt ctcccgctga agaaaacgac aaattaaagt ttatcggaca
     2641 tctgcttgtt ccacccttcc cagtttat
//
LOCUS       DATCGC010001198         2360 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_184177, whole genome shotgun sequence.
ACCESSION   DATCGC010001198 DATCGC010000000
VERSION     DATCGC010001198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2360)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2360)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2360
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184177"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..181)
                     /locus_tag="VIJ87_11635"
     CDS             complement(<1..181)
                     /locus_tag="VIJ87_11635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007403258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl synthase N-terminal-like
                     domain-containing protein"
                     /protein_id="HEY5445089.1"
                     /translation="MLRALRRPRRVVITGMGCVTPLGIGRENFWNALIAAKSGVRKIE
                     SFDVSNSPVKIAAEVP"
     gene            complement(336..1466)
                     /locus_tag="VIJ87_11640"
     CDS             complement(336..1466)
                     /locus_tag="VIJ87_11640"
                     /inference="COORDINATES: protein motif:HMM:NF024813.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HEY5445090.1"
                     /translation="MGILDRLSPSSQFIEVIEWLDESSNTLVYRFPVKDQEIKNGAQL
                     IVRESQAAVFVAEGQIADMFPPGRYTVDGGNTPILSKLGAWKYGFNSPFKAEVYFVNT
                     KQFTDLKWGTPNPIMMRDADFGMVRLRAFGIYSIRIADPKSFIKEIAGTNARFVTEDI
                     EGQLKRTLVGGFSDGLGESKIAALDLASNYDELGKFTREKLNEEFKTLGLELTKFVIE
                     NISLPPEVEAAMDKRTSMGVIGDVGRYAQFQAADAMRDAAQNTGGGAGTGAGLGAGFA
                     IGNAMAGAMTDAMKPKSAGGVACPKCGSNNAPGAKFCNDCGATLEVGGQTVPCVKCGA
                     GLQAGTKFCNECGAKQEKLSCANCKAEVAPGAKFCNECGQKV"
     gene            complement(1527..1985)
                     /locus_tag="VIJ87_11645"
     CDS             complement(1527..1985)
                     /locus_tag="VIJ87_11645"
                     /inference="COORDINATES: protein motif:HMM:NF016763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HEY5445091.1"
                     /translation="MERQSLARFLSRYAPLVIWLAFISFASSDGFSASNTSRVIEPIV
                     RWLFPHISQAHLESIHFLTRKLAHFSEYALLAILAVRAFRSSPNPHLKRRWFLVSVAI
                     IVLYALLDEYHQSFVPSRTASVFDSFIDMSGGLTTLVIIWLRRRKDDASN"
     gene            complement(2059..>2360)
                     /locus_tag="VIJ87_11650"
     CDS             complement(2059..>2360)
                     /locus_tag="VIJ87_11650"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020045333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HEY5445092.1"
                     /translation="KEEEPETKSQQAVSLVDYKYEQPPAEIFGQLLPRLIETQVFRAL
                     LESVASEQGARMTAMDSASKNASELIDSLTLNMNRIRQAAITNEIIEVVSGAAAL"
BASE COUNT          565 a          618 c          603 g          574 t
ORIGIN      
        1 tgggaacttc ggcggcaatc ttgacgggcg agtttgaaac gtcaaacgat tcaattttgc
       61 gcactccgct tttggcggcg attagagcgt tccaaaagtt ctcacggcca atgcctaagg
      121 gcgtcacaca ccccatgccg gtaatgacga cacgacgtgg acgtctaagg gctcttaaca
      181 tttactctga tcctctccga gctgatctga aaccaaggga ggaagaaagg atagcacgca
      241 gtcaagtacc gcgttcaacg tggggaaact gatcgcctgc tgaatccaga acccagcagg
      301 cgatctttaa agcacttaca aactgttggg ccgggctaca ctttttggcc acattcattg
      361 caaaacttag caccaggcgc gacctcagct ttgcagtttg cacagctgag tttttcttgt
      421 ttcgctccac attcgttgca aaacttcgtg ccggcctgaa ggccagcgcc acacttcacg
      481 caaggaaccg tctgccctcc gacttctaaa gttgcaccac aatcgttgca gaactttgcg
      541 ccaggggcgt tgttactccc acacttcgga cacgcaactc cgcccgcact cttcggcttc
      601 atagcatctg tcatcgcgcc ggccatcgcg tttccaatcg caaaacccgc acccaggccc
      661 gcgcctgtac cagcgccgcc acctgtgttc tgcgcagcgt cacgcatcgc atcggcagcc
      721 tggaactgag cgtatcttcc aacgtcgcca atcacaccca tcgaggttcg cttgtccatt
      781 gcggcttcga cttccggcgg caacgaaatg ttttcgataa caaacttcgt taactcgaga
      841 ccgagtgtct tgaattcttc gttgagcttc tccctggtga acttaccaag ttcatcgtaa
      901 ttggaagcaa gatccagtgc ggcgatcttc gactcaccga gtccatcact aaagccacca
      961 accagggttc gtttcagttg accttcgatg tcctcggtaa caaaccgggc attggtccca
     1021 gcgatttctt tgatgaacga cttgggatcc gcgatgcgaa tcgagtaaat gccgaacgct
     1081 ctaaggcgca ccatgccgaa gtctgcgtcg cgcatcatga tggggtttgg cgtgccccac
     1141 tttagatcgg tgaattgctt tgtgtttacg aaatagactt ccgctttgaa tggtgagttg
     1201 aagccgtact tccaggcgcc aagctttgaa aggatcggag tgtttccacc atcgactgtg
     1261 taacgtcccg gcggaaacat gtcggctatt tgaccttcgg caacaaagac ggcggcctgg
     1321 gattcgcgaa caatcagttg cgcaccgttt ttgatctcct ggtctttgac cggaaaccgg
     1381 tagacgaggg tgttgctgct ttcatcgagc cattcaataa cctcaatgaa ttgtgagctc
     1441 gggcttaggc gatcaagtat tcccattttt gaactctcat tcgtccgcag agatagaaaa
     1501 cacgatggat tatacgctga gaaggatcaa tttgatgcat catccttgcg cctgcgcaac
     1561 cagatgatta cgagtgtggt caggccgcca ctcatatcga tgaaactgtc aaagactgag
     1621 gcagtgcgag atggaacaaa gctctgatga tattcatcca agagagcgta gaggacgatg
     1681 attgcgactg agacaaggaa ccatcggcgt ttgaggtgag ggttcggaga tgaacggaag
     1741 gcgcggactg ccagaatcgc cagcaatgcg tactcactaa aatgggcgag tttcctcgtt
     1801 aaaaagtgga tcgactcgag gtgcgcctga ctgatatggg gaaacagcca gcgaactatt
     1861 ggctcaatga cgcgtgaggt gttgctggct gagaaaccat cggaggaggc aaatgaaatg
     1921 aaggccagcc aaataaccag tggagcgtag cggctgagaa acctggcgag tgattgtcgt
     1981 tccattttga cttccataaa taatgggaag cggagaaccg cttcccatct tcttaatctt
     2041 caggactcgt cgtgagtttc agagtgccgc agcaccagat acgacttcga taatctcgtt
     2101 ggtaattgct gcctgcctga tgcggttcat attcaacgtc aagctatcaa taagttcgct
     2161 tgcgttttta gaagcggaat ccatcgcagt catgcgcgcg ccctgttcag aagcaaccga
     2221 ttcgagaagt gcacggaaga cttgagtctc aatcaaccgt ggtagaagtt gtccaaatat
     2281 ctcggcgggt ggctgctcgt atttgtagtc cactagcgac actgcttgtt gcgacttcgt
     2341 ttcgggttct tcttctttct
//
LOCUS       DATCGC010001199         1032 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_483944, whole genome shotgun sequence.
ACCESSION   DATCGC010001199 DATCGC010000000
VERSION     DATCGC010001199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1032
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_483944"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..313)
                     /locus_tag="VIJ87_11655"
     CDS             complement(<1..313)
                     /locus_tag="VIJ87_11655"
                     /inference="COORDINATES: protein motif:HMM:NF017709.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease inhibitor I9 family protein"
                     /protein_id="HEY5445093.1"
                     /translation="MKKLCMLVLALATAATAVYFVPTKTSAKSEKLHRSQRPIPGQYI
                     VVLDETALGFANAVENTSSELSKDYPGEIREIYSNGLNAYSANMTEKAAMRLSADPRV
                     KF"
     gene            complement(569..>1032)
                     /locus_tag="VIJ87_11660"
     CDS             complement(569..>1032)
                     /locus_tag="VIJ87_11660"
                     /inference="COORDINATES: protein motif:HMM:NF019869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HEY5445094.1"
                     /translation="DSFESLQLNTPVAALMELSNSISDAGIEPDNASSDELYAVREAL
                     TSLTLMLTPFAPHTAEELFSVLIGNQNGIVANGARFPEYNEELAKADEIEIPIQVNGK
                     LRSRVMASPETPNDELEAMAKADEKIQELIAGKQIVKTIVVPKRLVNIVVR"
BASE COUNT          241 a          245 c          271 g          275 t
ORIGIN      
        1 caaacttgac ccgggggtct gcactcaatc gcattgccgc tttctccgtc atgttggctg
       61 agtatgcatt caacccgttc gaataaatct cccgaatttc accaggatag tctttcgaca
      121 gttcagacga agtgttttca actgcgtttg cgaaacctaa tgctgtttcg tccagaacaa
      181 ctatatattg acccggaatc ggtcgttgcg atcgatgcag tttctccgac tttgcagacg
      241 tcttcgtggg aacaaaataa acggctgttg cggcagtggc gagcgccaag acaagcatgc
      301 acagcttttt catttctgga ttctccttga aatgcctgga acggcttgat cagtgtgttt
      361 tgaagttcgg gctggaaggg tcccgttagg ccggtcaaaa tgacgtaagt cgttttgtca
      421 tctgggccgt tatagtaagg aaaacgctaa caggcagtgg gttccagcat ttaggggaaa
      481 tgagcagatt tggtcgttca aaatgaatga aagcggacca gggatgtccg ctgtcattaa
      541 ttattgagga gaacgatgga tgtaacgcct aacgaacgac gatattcacc agccgttttg
      601 gaacgacaat ggtcttcacg atctgtttgc cggcgatgag ttcctgtatt ttttcatcgg
      661 ctttagccat tgcttcaagc tcatcgttgg gcgtttcagg tgaagccatg acccgcgagc
      721 gcagcttgcc attcacctgg atcgggattt cgatctcgtc ggccttagcg agttcctcgt
      781 tgtattcggg aaacctcgca ccgtttgcga cgatgccatt ttggttaccg atcagcaccg
      841 agaaaagctc ttcagcggtg tgcggagcga atggcgtcag catcagtgtc agcgaagtca
      901 gcgcttcccg gacggcatag agctcgtcac tcgatgcgtt atcgggttcg atacctgcgt
      961 cactgatgga attagacaat tccatcaacg cagcaacggg cgtattcaac tgaagcgatt
     1021 caaaactgtc gg
//
LOCUS       DATCGC010001200         1226 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_414716, whole genome shotgun sequence.
ACCESSION   DATCGC010001200 DATCGC010000000
VERSION     DATCGC010001200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1226)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1226)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1226
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_414716"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1226
                     /locus_tag="VIJ87_11665"
     CDS             <1..>1226
                     /locus_tag="VIJ87_11665"
                     /inference="COORDINATES: protein motif:HMM:NF013283.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BamA/TamA family outer membrane protein"
                     /protein_id="HEY5445095.1"
                     /translation="NQLGYFNPIDKDKDVDRRTNDEEATVDLNLKVSERGRQQISFNG
                     GISGIGGSFFGLEYSTNNLLGRGEVLSFNVAAGNRQRSFQFSFTEPYIKDRPISAGFS
                     LFAFTQKFFGEGTFLSGNLNAQQDLINSQFNPNDVNEENLFTRDSYGASVYLSAPLSE
                     FYKKRRFTQFSRVGASYQVSISSVKDPQTNADPTSGAFIPVIYSQPNILTSRATLTFT
                     YDTRNASVDPTSGRELSAAMAVAGIFGDVRTYQPSLSYTQFFPVRRKKSTRPEVFGFR
                     LLAGTVGSFAITDKVKNANSLAFVDGVPIFERYFLGDEFTIRGYNVRSISPVAPVDTF
                     ITSQNVQFASNASGTPVNVPGLPASALSLGTFTGSSGSNVVGLPHSFTSIGGDTQLLG
                     NFEYRIPIIGDAVSIAA"
BASE COUNT          286 a          318 c          297 g          325 t
ORIGIN      
        1 aatcaactcg gctacttcaa tccgattgat aaagacaaag atgtagatcg ccgaacaaac
       61 gatgaagaag caactgtaga tctgaacctg aaagtcagcg aacgcggtcg tcaacagatt
      121 tcattcaatg gtggtatttc cggaatcggt ggctcgttct ttggtcttga gtattcaacg
      181 aacaacctgc tgggtcgagg cgaagtcctg tctttcaatg tggcagccgg aaatcgacaa
      241 cgatcgttcc agttctcttt cacggagcct tacatcaagg atcgacccat cagtgccggg
      301 ttttcgcttt tcgccttcac tcagaagttc ttcggagagg gaacctttct ttcaggaaat
      361 ctgaacgcac aacaggatct gatcaattcc caattcaatc ccaacgacgt caacgaagag
      421 aacctcttta cgcgcgactc gtatggcgcc tcggtctacc tcagtgcccc gttgtcggag
      481 ttttataaga agcgaaggtt cacgcagttt tccagggttg gcgcttcgta ccaagtctca
      541 atctctagtg ttaaggatcc gcaaacaaac gctgatccca caagtggagc cttcatccct
      601 gtgatttaca gtcagccaaa catcctgacg agccgagcca cactaacgtt cacttacgac
      661 acccgtaacg ccagtgtcga tccgacgagt ggtcgcgagt tgtcggctgc aatggccgtg
      721 gccggaatct ttggcgacgt tcgtacttat caaccttcgc tttcgtacac gcagttcttt
      781 cctgtcagac gaaagaagtc aacgcgtcct gaagtatttg gtttccgcct cctggctgga
      841 actgttggaa gcttcgctat tacggacaag gttaagaatg ccaactctct tgccttcgtt
      901 gatggtgttc cgatctttga gcgctacttc ctgggtgatg agttcacaat tcgcggctac
      961 aacgtccggt cgattagtcc ggtcgccccg gttgacactt ttattacgtc acagaatgtg
     1021 cagtttgcat cgaatgcatc gggaacacct gttaacgtgc caggtttgcc ggctagtgca
     1081 cttagcttgg gaacttttac aggttcgtca ggaagtaacg tagttggtct gcctcattcg
     1141 ttcacctcca tcggcggtga tacgcagttg cttggcaact tcgagtatcg cattccgatc
     1201 attggcgatg cagtaagcat tgcagc
//
LOCUS       DATCGC010001201         1670 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_216080, whole genome shotgun sequence.
ACCESSION   DATCGC010001201 DATCGC010000000
VERSION     DATCGC010001201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1670)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1670)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1670
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216080"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1664
                     /locus_tag="VIJ87_11670"
     CDS             <1..1664
                     /locus_tag="VIJ87_11670"
                     /inference="COORDINATES: protein motif:HMM:TIGR03434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5445096.1"
                     /translation="TLVPLQEEVVGNVRPILFVLLAAVGFVLLIACANVASLLLTRSL
                     ARQKEVAVRSALGASRWRVIRQLLTESLLLSIVGGAAGLLIAYWGTPALVAVLPQSQL
                     NAMPFLKSVQIDRSILLFSFGLSLLTGLIFGLAPALHSSSLDLNEVLKEGGRNTSAGV
                     GYRLRSAMVISEIALAVVLLIGAGLMMKSLFRLLQTNVGFKTENLLTMTIVLPATKYT
                     EDSQCIAFNDQLKERVQSLPGVANTGTVNILPLNGGNTTRFIVEGDPVPPPGQEVEAN
                     IRTVNDTYFQTLGVPLLAGRMFDESDKTDGQDVVIIGKSVADKVFPGRDPVGRKIKYT
                     ALDSEALLIVGVVGDVKITGLDQAIKPVLYYPFRQSASIFANLVVRTKGDPTVLANAV
                     RSEVRNIEPGAAILNVNSMDEMISQTPASFMRRFPALLISIFAAVALLLASIGIYGVV
                     SYSVSQQTHFIGIRMALGASPADILKMVMKQGVVLALLGVGIGVTAAFGLMRLLRDLL
                     FEVKTTDVSTFVFVSAVLFVVALLACFLPARRATKVDPLVALRYE"
BASE COUNT          343 a          408 c          472 g          447 t
ORIGIN      
        1 cgacattggt tccgctgcag gaagaggtgg ttggcaatgt cagaccaatt ctgtttgttc
       61 tacttgcagc ggttggtttc gttctcttga tcgcatgtgc aaacgtggcg agtctacttc
      121 tgactcgttc gctcgcccgg caaaaggaag ttgccgttcg ttccgcgctt ggcgccagcc
      181 gatggcgtgt gattcggcaa ctgttgactg agtctctctt gctctcaatt gtaggaggag
      241 cggccggact gttgatcgct tactggggca cacccgcgtt ggttgctgtg ttgccacaga
      301 gccaactgaa tgcgatgccg tttctcaaat cggtgcagat cgataggagc atccttctgt
      361 tttcgttcgg tctttctctg ctgacgggtc tcatatttgg acttgcaccg gcgcttcact
      421 cttcgagcct ggatctaaat gaggtcttga aggaaggcgg acgcaatact tcggcaggag
      481 ttggttatcg cttgcgcagt gcgatggtta ttagcgagat cgccttggcg gtagtgcttc
      541 tgatcggcgc cggtctaatg atgaagagtc tgtttcggtt gctacaaacc aacgtcgggt
      601 tcaagacaga aaacctgttg accatgacga tagttcttcc ggcgaccaaa tacaccgaag
      661 acagtcagtg cattgccttc aacgatcaac ttaaagagcg tgtgcaatcg ttgccaggtg
      721 tcgctaatac cggcaccgta aacatcctgc ctctgaatgg tggtaacacc acacgtttta
      781 tcgtcgaagg tgatcccgtt cctcctccgg gccaggaagt cgaggccaac attcgcacag
      841 tcaacgacac ttattttcaa acgcttggcg tcccgctgct tgctggacgc atgtttgatg
      901 aaagcgacaa gactgacggt caagacgtgg tgattattgg caagagtgtc gctgacaaag
      961 tgtttccagg acgcgatcca gtgggtagaa agatcaaata caccgctctc gactctgagg
     1021 cgctcctgat agttggggtc gtaggcgatg taaagatcac tggactagat caggcgatca
     1081 agccagtcct ttattacccg tttcgtcaga gtgcgtcgat cttcgcgaac ctggtagttc
     1141 gcaccaaagg ggatcccact gtgctggcaa atgcagtgcg cagtgaagtc cgcaatattg
     1201 aaccaggcgc ggcaattctg aacgtcaact cgatggacga gatgatctct caaacgccgg
     1261 cttcgtttat gcggaggttt ccggcgctac tcatcagcat ctttgccgcc gtggcgttgt
     1321 tgctggcctc gatcggcatc tacggcgtcg tttcatattc ggttagtcag cagacgcact
     1381 tcattggcat tcgcatggca ctcggtgcgt caccggctga cattctaaag atggtgatga
     1441 agcagggggt cgtgcttgcg ctgcttggag ttggaatcgg agtaacggcg gcgtttggtc
     1501 taatgcgctt gttacgtgat ctgcttttcg aagtgaagac gacagacgtt agtacttttg
     1561 tatttgtttc cgcggtgctc ttcgttgttg cgttgttggc gtgcttttta cctgcgcggc
     1621 gcgcaacgaa agtcgatccg ttagtggcgc tcagatatga atagatcgca
//
LOCUS       DATCGC010001202         1864 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_319096, whole genome shotgun sequence.
ACCESSION   DATCGC010001202 DATCGC010000000
VERSION     DATCGC010001202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1864)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1864)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1864
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_319096"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..593)
                     /locus_tag="VIJ87_11675"
     CDS             complement(<1..593)
                     /locus_tag="VIJ87_11675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445097.1"
                     /translation="MRVLRLNGRTVLLLLAEAALVYGSIIGAVYMRVGILDAPYELIE
                     KNGYWKAGLAAFFCLAAFYLFDLYDFIVMHDRRELVLRLVQALGLAWIALAIAFYAYP
                     SVMLGRSISLIALPLALGLMVGWRVSIHWFLGHPDIGERILIVGSGKLAVEVAREVLY
                     RPDAGYRIIGFVGTDSELLGKSLINPRVIGLTEQLGE"
     gene            complement(590..1702)
                     /locus_tag="VIJ87_11680"
     CDS             complement(590..1702)
                     /locus_tag="VIJ87_11680"
                     /EC_number="2.7.10.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004713 - protein tyrosine kinase activity
                     [Evidence IEA];
                     GO_function: GO:0004715 - non-membrane spanning protein
                     tyrosine kinase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CpsD/CapB family tyrosine-protein kinase"
                     /protein_id="HEY5445098.1"
                     /translation="MGRVFDALRRQSANEKPDAPTRQSTSSQRRSEGSSLAGLPSSRQ
                     IEEQLLSGSSILNVSPETARSSASSAHTADVPDGSALSGGIASRDAGATLDAAGSARV
                     GGLVTYDISPARVEPHLVAVSQPRSAYCEQFRALRTRILQAGERLQTRAIVVTSAGIA
                     EGKTLTALNLAWLLAQTEGVRCLIIDSDLRQPCVTDYLAIDAPVGLSEVLGGQLRLED
                     AIVRLNPAGLYLLPGGKPRDDVAELLSGPSYARTLTEVRRMFDYIIIDAPPLGIFTDA
                     NVLMNRADGALLVVRAGKTRYSVVDKMLEQIPKERMMGVVLNRADEQPDSNSYYYQHR
                     NYNRERGLKAAASKQLAAESQEEAAESQEEEVAVVS"
BASE COUNT          441 a          535 c          474 g          414 t
ORIGIN      
        1 atctcgccga gctgctccgt aagcccaatg actcgtgggt tgataaggct ctttcccagc
       61 aattccgagt cagttccaac aaagccaatg atgcgatagc cggcgtctgg tctatacaaa
      121 acttcacgag ccacttcgac ggcgagcttg cccgaaccca caatcaagat acgctcaccg
      181 atgtccgggt ggcccaggaa ccagtggatt gaaacccgcc atccaaccat tagacccaag
      241 gccaacggta gcgcgatgag tgaaatgctt cgtcccaaca tgacgctcgg ataggcataa
      301 aaagctattg caagggctat ccacgcgaga cccaatgctt gaacaagacg caacaccaac
      361 tctcgtcgat catgcatgac gatgaagtcg tacaagtcga agagatagaa agccgccagg
      421 caaaagaagg ccgcaagccc ggctttccag tagccgttct tttcaatcag ttcataaggt
      481 gcgtcgagga tgccaacacg catgtaaacg gcgccaatga tggagccgta gaccaaggcg
      541 gcctcagcca acagcagcag aacagttcgc ccattgagac ggagtactct caacttacga
      601 cagctacctc ctcttcctgc gactcggcgg cctcttcctg cgactcggcg gccaattgtt
      661 tcgacgctgc ggctttaagg ccgcgctcgc ggttgtagtt acgatgctgg tagtaataag
      721 aattcgaatc tggctgttcg tcagcgcgat tgagaacaac tcccatcatg cgctctttag
      781 gaatctgctc cagcattttg tcgacgacgc tgtagcgggt cttcccggct ctcacgacca
      841 ggagagcccc atccgctcga ttcatcagca cgtttgcatc agtaaatatt cccagcggtg
      901 gcgcatcaat aatgatgtaa tcaaacatcc gtctgacttc cgtcagggtg cgtgcatagc
      961 ttggtcccga cagtaactcg gcaacgtcgt ctctcggttt acctcccggc agcaaataca
     1021 accccgctgg attaagacga acgattgcgt cttcgagtcg gagctggccg ccaagaactt
     1081 ctgacagacc aacaggcgca tcgatggcca ggtaatcggt gacgcatggc tggcgcaagt
     1141 cgctatcgat gatcaagcaa cgaacgccct cggtttgtgc caacaaccag gcgagattaa
     1201 gagccgtcaa cgtttttcct tctgcaattc ctgcactggt tacaactatg gcgcgcgttt
     1261 ggaggcgttc gcccgcttgc agtatgcgag tacgcagcgc gcggaactgt tcacaatacg
     1321 cggatcgcgg ttgactcacg gcgaccagat gtggctcgac gcgcgcggga gaaatgtcgt
     1381 aagtgacaag tcctccaacg cgcgccgacc cggcagcgtc caaagttgcc ccagcatcac
     1441 gcgaagctat tccgccggag agtgccgacc cgtcgggtac atccgcagtg tgcgcagagg
     1501 acgctgaact tcgcgccgtt tcaggagaga cattaagaat cgacgaacca ctaagtagct
     1561 gttcctcgat ctgtctcgat gaaggcaacc ccgcaaggct ggatccttcg ctacggcgct
     1621 gtgaactcgt tgattgtcgt gtgggagcgt caggcttttc attggcgctc tgtcttctta
     1681 gggcatcgaa aactcttccc attcattcac ctcataggct actcagattc gattgacttg
     1741 gggtctcaca tttctgagct tttgtgtttt gaactttgaa cgcgcttcat acaatcgtca
     1801 aagtacaaaa atcgcatttc tttgctctta ctcaactgga accgtcggtg cgttctcagc
     1861 ttca
//
LOCUS       DATCGC010001203         1460 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_250386, whole genome shotgun sequence.
ACCESSION   DATCGC010001203 DATCGC010000000
VERSION     DATCGC010001203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1460)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1460)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1460
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250386"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..649
                     /locus_tag="VIJ87_11685"
     CDS             <1..649
                     /locus_tag="VIJ87_11685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445099.1"
                     /translation="DKMTAEIRDLLFGDLPAESWPVDTSNSPHAPWKLFVSARTFAAA
                     GDNENAKQKLREVLALTGLESRHYLQAWHFLRELGEQPLPREAKNLYGVVVEVALDEG
                     VDVVAAYADHSGRYFNYSGAAIVWDRPNESLDGVIDALLSAGKTVAEQIGPWDGPRPA
                     APPTGQARISLLVPAGLHFGQGPYQALAADPMGGPVLGAALNLMQSLIAIQDGKE"
     gene            789..>1460
                     /locus_tag="VIJ87_11690"
     CDS             789..>1460
                     /locus_tag="VIJ87_11690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445100.1"
                     /translation="MKRSLTIITIVAYLLFAGARADAKDSWHKVQSKNFTLVGNVSDG
                     DMRKIAFKLEQFRETLSLILPKVKITTPVPTTVVLFDSDQSFRPFKPRYQGKIKDNVG
                     GYFLPGPHMNYIVLSVDKERISPYKVIFHEYEHFFLHNNLLHLPLWLDEGLAEFYSTF
                     ETDGELKVTLGVPVPQHVFYLRSKPLLPFKTLLSVDQKSPHYNESSKAGMFYAESWAL
                     VHYLMN"
BASE COUNT          377 a          357 c          378 g          348 t
ORIGIN      
        1 ggacaagatg acagctgaaa ttcgagacct gctcttcgga gatttgcctg cagagtcatg
       61 gccagtagac acgagcaatt caccgcatgc gccgtggaag ttattcgtta gtgctcgcac
      121 gtttgcggcg gctggtgaca acgaaaatgc gaagcagaaa cttcgcgagg tattagcatt
      181 gaccggcctt gagtcgcgtc actacctgca agcctggcac tttttacggg aactgggtga
      241 acaaccgtta ccacgggaag cgaagaatct ctatggagtg gtggttgaag ttgcgcttga
      301 tgaaggtgta gacgtcgttg ctgcttatgc agatcattca ggtcgctact tcaactattc
      361 cggagctgcg attgtttggg accgtccaaa tgaatcgctc gacggcgtca ttgatgcgtt
      421 gctgagtgca ggcaaaaccg tagcggaaca gattggcccg tgggatgggc caaggcctgc
      481 tgcgcctcca acaggacaag cccgaatcag tctgttggtg cctgcaggac tacattttgg
      541 ccagggacca taccaggcgc ttgccgcaga tcctatgggt ggtccggtat tgggtgcagc
      601 actaaacttg atgcagtcgt tgattgctat tcaagacggt aaggaatagt tagtaaaccg
      661 ttaaaacggt tcctcaaaac tgagtccaac actaatccca agctgaaacc tggggagaat
      721 gagaccatcg ccagaggttc taaagtttat cgaacattca aggtgttcaa acctcaaagg
      781 agagacaaat gaagcgcagc ctcacgatca tcaccatcgt tgcgtatttg ctgtttgccg
      841 gcgccagggc cgacgctaaa gactcgtggc ataaagttca atcgaagaac tttaccctgg
      901 tcggcaatgt cagcgatggc gacatgcgca agatcgcttt caagctggag cagtttcgag
      961 aaacgctctc gctaatccta cccaaggtta agatcacaac accggtacca accactgttg
     1021 tcctgtttga ttcagatcaa tcctttcgcc cgttcaagcc acgttaccag gggaagatca
     1081 aggacaacgt cggcggttat tttttgccgg gtccgcatat gaactacatc gttctgtcag
     1141 tggacaaaga gaggataagt ccgtacaaag tgattttcca cgagtacgaa cacttctttt
     1201 tgcacaacaa tctcctgcac ttaccactct ggctcgatga aggactagcg gagttttaca
     1261 gtacgttcga aacagatggc gaactaaagg taacactcgg tgttcccgtt ccccagcatg
     1321 ttttctattt gcgaagcaaa ccgctactgc cgtttaagac gttgctgtca gtcgatcaga
     1381 aatcgccgca ctacaacgaa agcagtaaag ccggaatgtt ttatgccgag tcgtgggcac
     1441 ttgttcacta cctgatgaac
//
LOCUS       DATCGC010001204         1104 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_149909, whole genome shotgun sequence.
ACCESSION   DATCGC010001204 DATCGC010000000
VERSION     DATCGC010001204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1104)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1104)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1104
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149909"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1091)
                     /locus_tag="VIJ87_11695"
     CDS             complement(<1..1091)
                     /locus_tag="VIJ87_11695"
                     /inference="COORDINATES: protein motif:HMM:NF039196.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HEY5445101.1"
                     /translation="MDVKGEILELKNTVNTMVDQLSSFADEVTRVAREVGMEGKLGGQ
                     AIVKGVSGTWKDLTDNVNFMASNLTDQVRGIAKVVTAVATGDLSKKITVDVKGEILEL
                     KDTVNTMVDQLSSFADEVTRVAREVGMEGKLGGQAVVKGVSGTWKDLTDNVNFMASNL
                     TDQVRGIAKVVTAVANGDLKRKLFLEAKGEIAELAETINNMIDTLATFADQVTTVARE
                     VGVEGKLGGQGNVPGAAGTWRDLTDNVNRLAANLTTQLRAIADVATAVTKGDLTRSIQ
                     VEAQGEVAFVKELINEMIRNLRDTTLRNEEQDWLKTNLTKFTRMLQGQRDFLTVGKLI
                     LSELAPLVSAQQGAFYMIGTSDGESELNLL"
BASE COUNT          227 a          314 c          263 g          300 t
ORIGIN      
        1 agcaggttga gctcagactc tccatccgaa gtaccgatca tgtagaaggc accttgctgc
       61 gccgagacta gcggcgccaa ctccgataaa atcagttttc caaccgtcag aaaatcgcgt
      121 tgtccctgga gcattcgggt aaatttcgtt agattggttt taagccagtc ctgctcctcg
      181 ttgcgcagcg ttgtgtcgcg caggtttcgg atcatttcgt tgatcaattc ttttacgaac
      241 gcgacctccc cctgggcctc cacctggatt gatcgtgtga gatcgccctt ggtaactgcc
      301 gtagcaacat cagcgatagc gcgaagctgc gtggtgagat ttgccgccag tcgattcacg
      361 ttatcggtca aatcgcgcca tgtccctgcg gcgcccggaa cgtttccttg tccgccgagt
      421 tttccttcta cgcccacctc gcgcgcgaca gttgtgacct gatcggcaaa tgtcgccagt
      481 gtatcgatca tgttgttgat ggtttcggct agctcagcga tttcgccttt ggcttcgagg
      541 aaaagttttc gttttaaatc accgtttgcg actgcggtga cgacctttgc aatgccacgt
      601 acctgatccg tcaggttaga agccataaaa ttgacgttat cggtaaggtc tttccaagtc
      661 cctgaaacgc ctttgacaac agcctggcca cccaactttc cttccatacc aacctcgcgc
      721 gctacacgag tgacttcatc ggcgaacgac gacagttgat cgaccatcgt gttaacggtg
      781 tcttttaatt caaggatttc gccttttacg tccacagtaa tcttcttgct gagatcgcca
      841 gtagcgactg ccgtgacgac tttggcgata ccacggactt gatccgtcag gttcgacgcc
      901 atgaagttaa cgttgtcggt aaggtctttc cacgtcccgg aaacgccttt cacaatagct
      961 tggccaccca gctttccttc catgcccacc tcgcgcgcta cgcgagtgac ttcatcggcg
     1021 aacgacgaca gttgatcgac catcgtgttt acggtgttct ttaactcaag gatttcgcct
     1081 ttgacgtcca cggtaatctt ctta
//
LOCUS       DATCGC010001205         2414 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_85579, whole genome shotgun sequence.
ACCESSION   DATCGC010001205 DATCGC010000000
VERSION     DATCGC010001205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2414)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2414)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2414
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85579"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..362
                     /locus_tag="VIJ87_11700"
     CDS             <1..362
                     /locus_tag="VIJ87_11700"
                     /inference="COORDINATES: protein motif:HMM:NF018178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="family 16 glycoside hydrolase"
                     /protein_id="HEY5445102.1"
                     /translation="IDGQLYTPHCYQLKAKTYHGDGWVRVVAEVLGSDRITHFVEGTP
                     VITYSSPQLGGDVKSAVFAKRSGELLSEGYIALQAESHPTEFRKVEVLNLMGCTDRKA
                     KNFKAYYVKPDNTKCVY"
     gene            899..>2414
                     /locus_tag="VIJ87_11705"
     CDS             899..>2414
                     /locus_tag="VIJ87_11705"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HEY5445103.1"
                     /translation="MRKSIQRKSILLAFTLVLVTTLSVAAQTISGVMVGKVTDAQGAS
                     VPNAQVTVTSLSKKETKTAQTDQDGRFVFPQLTPDLYTVQVEAKGFKVFKLDGLVVNA
                     NDRVAAPDIALEVGAVTESVTVISSGEQLQAESAERGTAIVAEQIQNIAVNGRSYLSL
                     TRLAPGVVNNNNYQVSGHAGLAGISANGARANQNNLTLDGIGNVDTGNNGDQLATVSL
                     DAVEEFKILTSNYQAEYGRSSGAQISVVTKSGSNEFHGSGYLYHRHEGLNANNWVNNR
                     EKLARQFFRFNNFGYTIGGPVYLPHFGEGGPSVWSGKNKLYFFVTQEFQRQLRPQGIR
                     NVTVPTALERSGDFSQSKDNNGNKVFIRDYTKTGTCNATIQTACFSDNGIVNKIPSNR
                     LYGPGLAILNVFPQPNLAGVNGANFRSQISDSYPRREDLVRIDYKASDSLTLFGRYIN
                     NIDVISSFYGSFVLGTNLPLTRINDARPGKAFAVGATKTFNPTTVNEVTVGFGKN"
BASE COUNT          659 a          593 c          591 g          571 t
ORIGIN      
        1 tgatcgatgg ccaactctac acgccgcatt gctaccagct caaagcaaaa acgtatcacg
       61 gcgacggctg ggtaagagta gttgctgaag tccttggttc cgatcgcatc acacactttg
      121 tagaaggcac accagtcatc acctattcaa gtccacaact tggaggcgac gttaagagcg
      181 cggtattcgc aaagcgctca ggcgaacttt tgagtgaggg ctacattgcg ctccaagcgg
      241 aaagtcatcc cactgagttt cgcaaagtcg aagtgttgaa tctgatgggt tgtacggata
      301 ggaaagcgaa gaacttcaag gcttactacg tgaaacctga caatacgaag tgtgtttatt
      361 agcaggcatt tcggaaatgg aagctgctca aaccaaagag atctactcag aaccatcttt
      421 tatttagcgc tctctccctt tagtttgagt ttttttggcc ataagtcttg tagcctcaat
      481 tgataatctg tatactccgc gcaaattttg ggagccggat aggctccatt ctttaccagc
      541 tttagttcga cacgcgaaca aatagggtta accaaggaaa gaagttcttt caaggggttt
      601 tccgttcagg tggtagggaa gtttttccga cctcagtctt taagcattca cggcaaagct
      661 tagagcgaaa acaaaaaaaa tacgtaccgc tttacctttc gtgtcttacg tcattatggg
      721 ttctggcgac tttgttcggc ttgacaacaa agttctgtag gaagcgttga atcgatttcg
      781 tgctggtagc acattgcctt accgctgttc cagtacttcg cattaatcgt tcaaaactca
      841 acccgaagag ttgaatggtt gacggtcaat ctccacccaa aaaccgacgg aggaacaaat
      901 gagaaagagc atccaaagaa aaagcattct cctcgcattt acattggttt tggttactac
      961 tctgtcagtc gctgctcaaa ctatcagtgg cgtgatggtt ggcaaagtga cagacgcaca
     1021 aggagcatca gtcccaaatg ctcaagttac ggtaaccagc ctcagcaaga aagaaaccaa
     1081 gacagctcaa accgaccagg atggtcggtt tgtttttcct caattgaccc ccgaccttta
     1141 cacggtccag gttgaggcaa agggattcaa agttttcaag cttgacgggt tggtagttaa
     1201 cgcgaacgat cgtgtcgcag cccccgacat cgcacttgaa gttggagccg ttacggaaag
     1261 cgttacggtc atttcgagtg gggaacaact tcaagccgaa agcgctgagc gcggaaccgc
     1321 aatcgtagcc gagcaaattc agaatatcgc ggtgaacggt agaagctacc tatcgttaac
     1381 gcgacttgcg ccaggtgttg tgaacaacaa caactaccag gtctcgggcc acgcaggcct
     1441 ggccggcatt agcgcgaacg gagcgagagc caatcagaat aatctaacgc tcgatggcat
     1501 tggcaacgtc gacactggaa acaacggcga ccagttagcg acagtaagtc ttgatgcagt
     1561 tgaagagttc aagattctga cttcaaacta ccaggcagaa tatggacgct cgtcgggcgc
     1621 gcaaatcagc gtggtgacaa agagcggcag caacgagttc catggcagcg gctatttgta
     1681 tcatcgccac gaaggcctca acgccaacaa ctgggtcaac aatcgcgaaa agcttgcacg
     1741 tcagttcttc cgcttcaata actttggcta cacgatcggt ggtcctgtct accttccaca
     1801 tttcggtgaa ggtggtccca gcgtttggag tggaaagaac aagctctact tctttgtgac
     1861 gcaggaattc cagcgacaac tgcgcccaca aggcattcgc aacgtcaccg tgccaactgc
     1921 gttggaaaga agtggcgact tctcacaaag taaagacaac aacggcaaca aggtattcat
     1981 tcgcgactac acaaagaccg gtacgtgcaa cgccactatc cagacggcgt gcttctcaga
     2041 caatggaatc gtcaacaaga taccctcgaa ccgtttgtat ggaccgggac tcgcgattct
     2101 gaatgtgttt ccacaaccaa atctcgcagg cgtgaacggc gccaacttca ggtcacaaat
     2161 atctgactct tatccgcgtc gcgaagatct ggtcaggatt gactacaagg cgtcggattc
     2221 gttaacactg ttcggtcgat acattaacaa catcgacgtt atctcttcgt tctatggttc
     2281 gtttgtgctg ggcacgaatc tgccactcac ccgtattaat gacgcccgac cgggtaaggc
     2341 ttttgccgtc ggtgctacga agacgtttaa tccgacgacg gtcaacgaag tgactgttgg
     2401 tttcggaaag aatc
//
LOCUS       DATCGC010001206         1049 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_414788, whole genome shotgun sequence.
ACCESSION   DATCGC010001206 DATCGC010000000
VERSION     DATCGC010001206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1049)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1049)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1049
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_414788"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            260..>1049
                     /locus_tag="VIJ87_11710"
     CDS             260..>1049
                     /locus_tag="VIJ87_11710"
                     /inference="COORDINATES: protein motif:HMM:NF013698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEY5445104.1"
                     /translation="MPRYYLGVDWADRVHQLYGGDENGIKVMEMKVQENPEGLAELGH
                     WLNQSRAEQVELWAAIEKPHGRIVDFLLDHGVVVYPVNPKVLDRARDRFRMSQSKSDP
                     FDAWVLSDFLRTDHGHLRPLAPNSEQAQELKLLTRDQQRMVRHKTRLLNQLKFTLKEY
                     YPRPVEVFGDLESRVAVDFLKQYSTPTALSKLSRKQWSRFAQQHPHLGQARSTKLWEE
                     LKKPQLVVPDHVVRAKAQLLEVLLDQLEASLRSIEKYSDKVERFF"
BASE COUNT          267 a          241 c          302 g          239 t
ORIGIN      
        1 tcaacgtact caaacgtacg ccttatatta ctgcagtcag catacgatga ttagatattg
       61 cattcgtagt ccaagaagct tgctggttag aggaccttac gtacgcgatt ccgtcagagg
      121 atctagctga gactgtcccg accagcaaaa ggacggagtc aaaagttcta tggaaagttg
      181 tcccgtagag gaccgatata aggctaacat tccgttcaca gctgttggaa taaagtaagc
      241 aaagaaggag gacaacaaag tgccgcgata ttatctggga gtggattggg cagaccgagt
      301 gcaccagctg tacggcggcg atgagaacgg gataaaagta atggagatga aagtccaaga
      361 gaaccctgaa gggctggcgg agttggggca ttggctcaat cagagcagag ccgagcaggt
      421 ggagctgtgg gcggcgatcg agaagccgca cgggcgcatt gtggattttc ttttggatca
      481 cggggtagtg gtttacccgg tcaatcccaa ggtcttggat cgtgctcggg accggtttcg
      541 catgagtcaa tccaagagcg acccttttga cgcttgggta ctgtcggatt ttcttcgaac
      601 cgaccatggt catctcagac cccttgcgcc aaattctgag caggctcagg agcttaagct
      661 gcttactcgt gatcagcaaa gaatggtgcg tcacaaaacg cgtttgctca atcagctcaa
      721 gttcactctc aaggagtact atcctagacc ggtggaggtt tttggggatc tggagtcgcg
      781 tgtagcagta gattttctca agcagtattc gacgccaacg gcgctctcga agcttagccg
      841 taagcagtgg agccgatttg cccagcagca tcctcatctt ggtcaagcac gcagtaccaa
      901 gctgtgggag gaactgaaaa agccgcaact tgtggttccc gatcacgtcg tcagagccaa
      961 ggcgcagttg ctcgaagtgc tgctcgatca gcttgaggct tcgctgcgaa gcattgagaa
     1021 gtacagcgac aaggtcgaac gttttttcg
//
LOCUS       DATCGC010001207         1481 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_85592, whole genome shotgun sequence.
ACCESSION   DATCGC010001207 DATCGC010000000
VERSION     DATCGC010001207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1481)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1481)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1481
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85592"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1211)
                     /locus_tag="VIJ87_11715"
     rRNA            complement(<1..1211)
                     /locus_tag="VIJ87_11715"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          313 a          456 c          325 g          387 t
ORIGIN      
        1 cccaccttcc tccccgtttc acagggcagt ctgaacagag tgctcgaccc tcgcgggtcg
       61 gtggcaacag ttcacagggg ttgcgctcgt tgcgggactt aacccaacat ctcacgacac
      121 gagctgacga cagccatgca gtacctgtgc acactggtat tgctacctcg tcaccctttc
      181 aggcttctac tatgtgcatg tcaaggccag gtaaggttct tcgcgttgca tcgaattaag
      241 ccacatactc caccgcttgt gcaggccccc gtcaatttct ttgagtttta accttgcggc
      301 cgtacttccc aggcggcacg tttaacgcgt tagcttcgcc acaaaagggg tcgattcctc
      361 ttacagcaaa cgtgcaccgt ttagggccag gactaccggg gtatctaatc ccgtttgctc
      421 ccctggcttt cgtgcctcag cgtcaggaaa tgtccagaga ctcgccttcg ccactggtgt
      481 tccacttgat atctacgcat ttcactgcta caccaagtat tccagtctcc cctccattcc
      541 tctagccgaa tagtatccga cgcagtttcc aagttgagct tgaagatttc acgtcagact
      601 tacccgaccg cctacgcacc ctttacgccc agtgaatccg aacaacgctt gggacctctg
      661 tattaccgcg gctgctggca cagagttagc cgtcccttcc tctttcgcta ctatcagctc
      721 atcatctttt aaataatgag gtttgttcgc aaatgacagg ggtttacggg ccgaagccat
      781 tcatccccca cgcggcgtcg ctccatcagg cttgcgccca ttgtgaaaaa ttctcgactg
      841 ctgccacccg taggtgtctg gaccgtgtct cagttccagt gtggctggtc gtcctctcag
      901 accagctacc cgtcttagcc ttggtgagcc gttacctcac caactagctg ataggccgcg
      961 ggctcatcat gaagcgtcag gccttacggt ccccaacttt gaaattcaga agatgccttc
     1021 caaacgtcac attcggtatt agctcgcctt tcagcaagtt atccccaact tcacggcaaa
     1081 ttacccacgt gttacgcacc cttgcgccac tccgaccacg ctacattgct gcaacgtaat
     1141 cagcgttcga cttgcatgtc ttatccacgc cgccagcgtt cgttctgagc cagaatcaaa
     1201 ctctccgtat aaaaacgtta gttgattcga ctgtgtgttc ggttcgtgag aaccgaacgg
     1261 gtctattaat ctttaaaact cttcaattcg gttcaactaa ctgaaccgac tcgaaggggc
     1321 tctcacttat cgcacaattc agttttcaat gaacagtgag cgttgccgct cgaaattcca
     1381 tcgtcccatc caggggacaa aaaacctcag tgccggtctt tgtttccgcg actcggcatc
     1441 tgagtcactc gttgtttacg gagccagtct tgctgtccgc t
//
LOCUS       DATCGC010001208         2384 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_250405, whole genome shotgun sequence.
ACCESSION   DATCGC010001208 DATCGC010000000
VERSION     DATCGC010001208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2384)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2384)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2384
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250405"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            447..1937
                     /locus_tag="VIJ87_11720"
     CDS             447..1937
                     /locus_tag="VIJ87_11720"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5445105.1"
                     /translation="MYRNSRRVCVAVLLCVLAPVVTVETSAQAQNSVAAGQPRPAISV
                     LDSTKEQDGLVGSVRRVKIESAKVEVQDGRPVEGARQLLELTTYGINGKRIENTSYPG
                     RDSLIGKEEYKYDNRGDIIEMTLRDDHGTILSREAYSYEFDTFGNWTKMVTSLVVFEN
                     GQLKSEPVEVTYRTVTYYFSESIAKIAAVSSQKLPAPTEPTEFQLQSLEKDGINFSFS
                     VSREVSGSSLDLAGTPPPFTRKTPEVKKNVAEDRIGNDETNTLSQTPGAGMVQASLRN
                     GPSAKQGAAPVQNAGEAIDSKRRESVSVPLAARNSSAVEGSRPEGSPENLKPSGDAAA
                     KKAALESYRTASAFLDAGNVKAAIEAYLESIELDPQSAAEVFLSLGAAYVKLDKNADA
                     AKAFKQAVKLKPGLSEGQYGLGLAYFQLHRYRDAVVAFKKATSLDPKMAKAHFGLGMA
                     YQELMENNLVTEEYRILELLDKDLAKKLAKTFRDNNSGCWIKEFCH"
     gene            1961..>2384
                     /locus_tag="VIJ87_11725"
     CDS             1961..>2384
                     /locus_tag="VIJ87_11725"
                     /inference="COORDINATES: protein motif:HMM:NF025690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4388 domain-containing protein"
                     /protein_id="HEY5445106.1"
                     /translation="MQNSRFVVLTGHLRDYPLSDLVGILRHQRKTGRLTIEYPKGHGT
                     FFFNDGELVDAQLSELTGLQAICVALAQPEAAFNFNPLIQPSRRSIAPSFQRVVSELF
                     GCWDESALQIEGTGIVDNSERSLPPASTPSNTPQLIPSG"
BASE COUNT          612 a          602 c          606 g          564 t
ORIGIN      
        1 cacagattcg ccggcgtctg atgagtgtaa acactcgtca tctgtactga cgcgtgaccg
       61 agtagatctc gaatatccca ctcgtgaaca ccattggctc ttagacgcgt agcgaaggtg
      121 tgacgagtat cgtgccacct gagattcacg agacccgccg catgcgttcc gtcagcctgt
      181 cttaatggaa tcgaatctca acttttctgc aaaagtagat aatgatgtct agtaattcgc
      241 ccgcacttat tgtattcttc gcgccggaca gtacaagata tggtgtggct ggagcgaggt
      301 gcggactcgg tcaaaccccg tccgccttct ctcaacccac tcttcagacg atcaatcaaa
      361 taaatccagg tagcgtttcc gcaacttcgc tattccggtc ttggccggac cgggaccagt
      421 gcgagatttg aaactggagg gcgcaaatgt accgcaattc aagaagggtc tgtgttgctg
      481 ttttgctatg tgtattagca cctgttgtta ctgtagagac ttccgctcag gcacaaaaca
      541 gcgttgcggc tgggcagcca cgtcctgcta tatcagtact cgacagcacg aaggaacagg
      601 acggccttgt aggctcagtg cgacgagtca aaattgaatc cgccaaagtt gaggtccagg
      661 atgggcgacc tgtggagggg gcccgccagc ttcttgagct cactacctat ggaatcaacg
      721 gaaagagaat tgagaatact tcttatcctg gtcgcgattc cctaattggc aaggaagaat
      781 ataaatatga caaccggggt gacatcattg agatgaccct ccgagatgac catggcacca
      841 ttctaagcag agaagcctac tcctatgagt tcgacacatt tggcaactgg acaaaaatgg
      901 ttaccagtct tgttgttttc gagaatggtc aattgaaatc cgaacctgtg gaggttactt
      961 ataggacagt cacctactat tttagtgaga gcatcgccaa gatcgctgcc gtttcgtctc
     1021 agaagttacc cgcgcccacg gaacctacag agtttcagct tcaaagcctg gaaaaggacg
     1081 gcatcaactt tagtttctct gtgagccgag aagtctcggg aagctcactc gatttagcgg
     1141 gcacaccgcc tcctttcacc agaaaaaccc cagaggtaaa aaagaacgtc gcagaggaca
     1201 ggataggcaa cgacgagacc aatactctga gccagacacc tggtgccggg atggtgcagg
     1261 cgagtcttcg taatggacct tcagcaaaac aaggtgctgc tccagtgcag aatgcaggcg
     1321 aagccattga ttcgaagcgc cgtgagagcg tgtcggttcc tttagctgcg cgcaattctt
     1381 cagcagttga aggctcacgg ccggaaggtt ctcccgaaaa cctcaaaccg tctggtgacg
     1441 ccgctgctaa gaaagccgca ctagaatcct accgaaccgc ttcggcgttc cttgacgctg
     1501 gtaacgttaa agctgcaatc gaggcctacc ttgaatcaat tgaactcgac cctcaatcag
     1561 ctgctgaggt tttcctcagt ctcggtgccg cctatgtcaa gttagacaaa aacgctgatg
     1621 ctgccaaagc tttcaagcag gcggtgaaac tcaagcccgg tttgtcagaa ggtcaatacg
     1681 ggttagggct cgcatacttt caattgcatc gttacagaga tgctgtcgtc gcatttaaga
     1741 aggcgacgag tctggatccc aaaatggcta aggctcattt tggcctggga atggcttatc
     1801 aggaattgat ggagaacaat ttggtgactg aggagtacag gattctcgaa ctcctggata
     1861 aggatcttgc taaaaaactt gccaaaactt tccgcgataa caactcagga tgctggatta
     1921 aggagttttg ccattgacac cgtactagga aggagcagca atgcagaata gccgtttcgt
     1981 ggttttgaca gggcatctgc gtgactaccc gttgtccgat cttgtgggaa ttcttcgcca
     2041 ccaacgcaag accggacgat taacaattga atacccaaaa ggccacggaa cgttcttctt
     2101 caatgatgga gagctagttg atgcacaact aagtgagcta acgggcttgc aggccatatg
     2161 tgtggccctg gcccagccgg aagctgcctt caattttaac cctcttattc agccgtctcg
     2221 ccgatcgatt gcaccctcgt ttcaaagagt tgtctcggag ttattcggct gctgggacga
     2281 aagcgctctg caaatcgagg gcacgggaat cgtcgacaat tcggaacgtt ctctcccgcc
     2341 ggctagtact ccctcgaata cgcctcaact tattccatct ggaa
//
LOCUS       DATCGC010001209         1517 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_184282, whole genome shotgun sequence.
ACCESSION   DATCGC010001209 DATCGC010000000
VERSION     DATCGC010001209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1517
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184282"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1517)
                     /locus_tag="VIJ87_11730"
     CDS             complement(<1..>1517)
                     /locus_tag="VIJ87_11730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445107.1"
                     /translation="WSARSDAAQINNENPPEDVYFYMRVWNRGADTESPANINFVAGT
                     PVALAKTGLQVTFTGTQLRKNDYWIVAVRPETPNTFVPWELTVGRPPHGVRRWIAPLG
                     MIHWPGGGVGPVEVTDDCRPTFLPLTKIKGCCSYTVGDGTHSFGNFLKIQDAVNALPA
                     RGGQVCVLQGIYDQSVVIDKRVAITIHGCGKRTRVQAISDQKGPLPAFLITNSTEIAL
                     EDMAIESGPRSAVEVQNSRHVTVQRCLIQMRDRPTIWQAIFSRGDDVLIDSNIIEVLP
                     REGGPPLPTVPPAFGTAGAPSGVHTPPDPVVIGFATRGGVQLGGGSDRVRISNNIIRG
                     GIWNGITLGSVHIVGSKDPDDPPDRPNSEDPCDPCRPVDLGDDDPIEGNIRFESAGDL
                     YDIEIVGNKITDMGINGIGVVRFFNLTKGGDLVGVHGLHIYDNFIARCMRRNIAQVSQ
                     AMQLLTGYGGISLAKVSDLRILRNEIVNNGISHIQPICGVFAIFVQGLQLDDNRI"
BASE COUNT          366 a          417 c          389 g          345 t
ORIGIN      
        1 aatgcggttg tcgtccaact gaagcccttg aacaaaaatc gcgaagacgc cgcagatcgg
       61 ttgaatgtga ctgataccgt tgttgactat ctcgttgcga agaatacgca ggtcgctcac
      121 cttggctagt gagataccgc catagcccgt gagaagctgc atcgcctggc taacctgcgc
      181 gatgttgcgt cgcatgcaac gcgcaatgaa gttgtcgtaa atgtggaggc catgaacacc
      241 gacaagatcg ccgccttttg tcagattgaa aaagcgcacg acgccaatgc cgttgatacc
      301 catgtcggtg atcttgttgc cgacaatttc gatgtcgtac aaatcgccag ctgactcaaa
      361 gcgaatgttg ccttcaattg gatcatcatc accgagatca acgggacgac acgggtcaca
      421 aggatcttcc gagttcggcc tatctggagg atcgtctgga tctttcgagc caacgatgtg
      481 aacactgccg agcgtgattc cgttccagat gccgccgcga atgatgttgt tagaaatccg
      541 aacgcgatcc gaaccaccac ccaactgcac accacctcgc gtcgcaaaac caatgaccac
      601 aggatcggga ggtgtatgaa cacctgacgg tgctcccgcc gtaccaaatg caggggggac
      661 cgtcggcaat ggtggaccac cttcacgtgg tagtacctcg atgatgtttg aatcgatcag
      721 tacatcgtcg cctcgggaaa agattgcctg ccagattgtt ggacgatcac gcatctggat
      781 caaacagcgt tgcactgtta catgacgtga gttctgaacc tcgacagcac tgcgaggacc
      841 agactcgatc gccatgtctt cgagtgctat ctcggtcgag ttggtgatca agaatgccgg
      901 caatggacct ttttgatccg agattgcctg cactcgtgtt ctcttcccac atccatgaat
      961 cgtgatcgca actcgtttat cgatcacaac actctggtcg tagattccct gcaacacgca
     1021 aacttgtccg ccacgtgccg gtagtgcgtt caccgcatct tgaatcttca ggaagttgcc
     1081 aaaactgtgg gtgccatcac cgacagtgta ggaacagcag cctttaatct tcgtcaacgg
     1141 gaggaatgtg gggcgacaat cgtcagttac ctcaactggt ccaacacctc cacccggcca
     1201 atgaatcatt cccaaaggag cgatccaacg acgtacacca tgaggtggtc taccaaccgt
     1261 gagttcccaa ggcacaaacg tatttggagt ctctggtcga acagcgacga tccagtagtc
     1321 gttcttgcgc agctgagttc ccgtgaaagt gacctgcaga ccagtcttcg caagtgctac
     1381 tggagtgccg gcaacgaagt taatgttcgc gggtgattcg gtgtcggcac cgcgattcca
     1441 aacgcgcatg tagaagtaga cgtcttccgg tggattctcg ttgttgatct gcgccgcatc
     1501 acttcgcgca ctccaac
//
LOCUS       DATCGC010001210         2118 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_451601, whole genome shotgun sequence.
ACCESSION   DATCGC010001210 DATCGC010000000
VERSION     DATCGC010001210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2118
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_451601"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..563
                     /locus_tag="VIJ87_11735"
     CDS             <1..563
                     /locus_tag="VIJ87_11735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445108.1"
                     /translation="TRVGSQLSMDYSLKTFADSVPVEKLQRHFEILDQAQSVVGYDLD
                     RGRATVAVTSSPPSSLAVAMTSLVVLVPLAGIGIWALRSRLRRRRRTKFVKEMQARPG
                     TSPETALRLTAKEQMESVLQNYNCRCGARPYNSDTPPKRERFMYDGQRLIGIRLVCVG
                     CKQGSDLYVNPLFENEGAGLADLSTS"
     gene            complement(799..1278)
                     /locus_tag="VIJ87_11740"
     CDS             complement(799..1278)
                     /locus_tag="VIJ87_11740"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEY5445109.1"
                     /translation="MANYQFTTVWKVPASQQQVWDLIFNSDRWPDWWRGVEKVEKLKD
                     GDSRHVGALMRYTWKSKLPYRLIFEMETTRVEPISIIEGRAIGELQGQGRWTLSHDDG
                     VTTARYDWKVETTKAWMNLLAPVARPFFSWNHDVVMGWGGEGLANQLGVSLVESSNK"
     gene            complement(1412..>2118)
                     /locus_tag="VIJ87_11745"
     CDS             complement(1412..>2118)
                     /locus_tag="VIJ87_11745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445110.1"
                     /translation="VDNALDRLFLLFAFNYPFVEFIARDPEAMARVPAALRGGVNGLS
                     TILLIATVVLGFTWLARQVQRALVGEPLNVPKYLLLAAAIPMHWIVLLTPMPHKPIAI
                     VAILTIYHNLQYHRLIWFHNKKYNRMAVSRTQDSNSLGSDSDQVNYGAASVISRHIAY
                     YIGFGILFGIIYQGPRQLLGYLSFQNATAGATAQPFMIQLGISFLWGYAFIHYYLDSK
                     IWRVRRDASVGKALNM"
BASE COUNT          526 a          541 c          554 g          497 t
ORIGIN      
        1 atacaagagt tggaagtcag ttgagcatgg actattcgtt aaagacattt gcagattcgg
       61 tgccggttga aaagctgcaa cgacattttg aaatcctcga tcaggctcag tctgtcgttg
      121 gttacgactt ggaccgtggt agagcgactg ttgccgtaac gagttcgccg ccgtcaagcc
      181 tggcggttgc gatgacgtca cttgtggttc tagtgccact ggcaggaatt ggtatttggg
      241 cgcttcgcag tcgcctccgg cgacgaagac ggacgaaatt cgtaaaagaa atgcaagctc
      301 ggcccggtac ttcgccagaa actgcattgc gtcttactgc aaaagaacag atggagtcgg
      361 tgttgcagaa ctacaattgc agatgtggcg cgcgtcctta caattctgat acgccaccaa
      421 agcgagagcg attcatgtac gacggccaac gtctcattgg catacgacta gtctgcgttg
      481 gctgtaaaca aggcagcgac ctctacgtga atcctttgtt tgaaaatgaa ggtgcaggac
      541 ttgcggatct gagcaccagt tagtgaccag cggtcaacac cacccacggc agtgggcgga
      601 tggttcaagt ccaacctaca taaagcacgt tcaagatcct ggcgcttcgc gcttcaggac
      661 gacccaaacc tcgcagagtc tgcgtcgact ccgcgcaaag cgccgcattt gttagcgtgc
      721 tctgagtagg ttggacttga agcgtccacc aactgccgtt ggtggtatta cgacttttta
      781 tttgaagcca acataacgct acttgtttga agactcgacc aaactaaccc ccaactggtt
      841 cgccaatccc tcgccacccc aacccataac gacgtcgtga ttccaactaa aaaacggtcg
      901 tgcaacggga gcaagtagat tcatccacgc tttcgtggtt tcaactttcc aatcgtagcg
      961 cgcggtggtg acgccatcgt cgtgtgagag cgtccaacgt ccttgcccct ggagttcacc
     1021 gattgcgcgt ccttcgatga ttgagattgg ctcaacccgt gtggtttcca tttcgaagat
     1081 caatcgatat ggaagcttac tcttccacgt gtaacgcata agtgcgccaa catggcgcga
     1141 atcgccgtcc ttcagcttct ccactttttc cacacctcgc caccaatccg gccatcgatc
     1201 cgagttgaag attagatccc agacttgttg ttgagacgcc gggactttcc agacggtggt
     1261 gaattggtag ttggccatgt tgggggtttc agcctttaac tcctcgtctc ttgtgcttag
     1321 tactttgttc gctagctgga ccgctcgctt aattaagtac ggaccgctca aacaaacaaa
     1381 gtcaccaggt acaaaacaca aagctccccg actacatatt caacgccttc ccaacactcg
     1441 catcccgccg cacacgccaa atctttgagt cgagatagta gtggatgaag gcataacccc
     1501 atagaaacga gatgcccagt tggatcatga agggctgagc agtagcgccg gcggtggcgt
     1561 tctggaaact aaggtaaccg agaagctgac ggggaccctg gtagatgatg ccgaacaata
     1621 ttccgaaacc gatgtaataa gcgatgtgac gactgatgac tgatgccgca ccatagttga
     1681 cttgatcaga gtcggagcca agggagttgc tgtcctgtgt tcgactgacg gccatgcggt
     1741 tgtacttctt gttatgaaac cagattagtc gatgatattg gaggttgtga tagatggtga
     1801 gtatcgcaac gatcgcgatt ggtttgtgag gcattggcgt taagagaaca atccaatgca
     1861 taggaatcgc ggcggccaat agcagatact tcgggacgtt aagcggctcg ccaaccagtg
     1921 cgcgttgaac ctgtcgtgcc aaccaggtaa agccaagcac gacggtcgca attaacaaga
     1981 tcgttgacag gccgttgacg ccgcctctta aagctgcagg tactcgcgcc attgcctccg
     2041 gatcgcgcgc gatgaattcg acgaatggat agttgaacgc aaacagtaag aaaaggcggt
     2101 caagtgcatt gtcaactt
//
LOCUS       DATCGC010001211         1260 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_116272, whole genome shotgun sequence.
ACCESSION   DATCGC010001211 DATCGC010000000
VERSION     DATCGC010001211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1260)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1260)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1260
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116272"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            131..>1260
                     /locus_tag="VIJ87_11750"
     CDS             131..>1260
                     /locus_tag="VIJ87_11750"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HEY5445111.1"
                     /translation="MLVSLKTLLTKTFQVSSLLLVFLTFANVAFGQTQSAAADLQGSV
                     KDATGAVVPNATITARFAATNVSRTATSNDEGFYRIVNLTPGDYEITVEAANFKKAVL
                     TKVNLTVGQTAQLDVSLEPGAISESVTISDATSEIVETSKTAVATTIDQQRINNLPIN
                     ERNYLSFALTTSTVGRDNGRPIGPAPTTGLNFGGQRGRSNLVQVDGADNTDNSVNASR
                     STVSQEAVQEFQVVTNSFAPEFGRSAGGVVNVVTKSGSNDLHGNMFGFLRHRSFQARN
                     AFAPVADPPFTRTQYGFTIGGPFDRDRTFFFFAFEQRRRNESGFFTSDVARGLTGSVT
                     LPPLAPGFPSQTLTNITPAQATYINTLLGNAATQQLGIGYAYL"
BASE COUNT          314 a          342 c          301 g          303 t
ORIGIN      
        1 cgttccggcg cactcccgcg cgtcgttcga aaaggtgaga agtgcatctc ccgtacaact
       61 tctcgaaaga tcaagattcc aagtcagcac aagtttcaat cgttcgtaaa cagttaagga
      121 gactatgaca atgttggtat ccctaaagac attgcttaca aaaacctttc aagtaagttc
      181 tttgctcctt gtcttcctga ccttcgcgaa cgtggccttc ggacaaacac agtcggctgc
      241 cgccgatcta cagggttcag tgaaagacgc aactggtgcg gtcgttccca acgctactat
      301 tacggcgaga tttgccgcca ccaacgtttc gcgcactgcg acttcgaatg atgaaggctt
      361 ctatcggatc gttaatctca caccaggtga ttacgaaatc accgtcgaag ctgcaaactt
      421 taagaaagct gttttgacca aggttaattt aacggtgggc caaaccgcac aactcgatgt
      481 gtcgttggag cctggtgcaa ttagtgaaag cgtaactatt tcggatgcga catctgaaat
      541 tgtggaaaca tcaaagacgg cagtcgcaac aacgatcgat cagcaaagaa ttaacaacct
      601 tcctatcaac gaacgcaact acttgtcgtt tgctcttact acttcaacag tgggccgcga
      661 caatggccga ccgattggtc cagcgccgac aactggtttg aactttggcg gccagcgtgg
      721 acgatcaaat cttgtccagg tcgacggcgc tgacaacaca gacaactctg ttaacgcgtc
      781 gcgctcaact gttagccagg aagcagtgca ggagtttcag gttgtaacga attcgtttgc
      841 acccgaattt ggtcggtccg ctggtggcgt cgtcaacgtt gttaccaagt caggctcgaa
      901 tgacttacac ggcaatatgt ttgggttcct gcgccatcga agtttccagg cacgcaatgc
      961 attcgcccca gttgccgatc cgccattcac gcgaacacag tatggtttca ctattggtgg
     1021 gccattcgat cgtgaccgaa cattcttctt ctttgcgttt gagcaacgcc ggcggaacga
     1081 gtcagggttc tttaccagcg acgtggcccg gggattaaca ggttcagtta cgctgccccc
     1141 tctcgcacca ggctttccgt cacaaacact gaccaacatt acgccggccc aagcgacgta
     1201 tatcaacact ctgcttggaa acgccgccac tcaacagctc ggaatcggct atgcgtatct
//
LOCUS       DATCGC010001212         1259 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_250416, whole genome shotgun sequence.
ACCESSION   DATCGC010001212 DATCGC010000000
VERSION     DATCGC010001212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1259)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1259)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1259
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250416"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1225)
                     /locus_tag="VIJ87_11755"
     CDS             complement(<1..1225)
                     /locus_tag="VIJ87_11755"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEY5445112.1"
                     /translation="MKAPKVMIVGLDAATWDLAKPWVAEGHMPNLAKLMSEGTSGKFE
                     SVFPPITPPAWTSFTTGKNPGKHGIFHFMETKPDSYALSYSNATSRRTRTVWKILNDA
                     GITTGICNVPFTYPPEPLNGYQTSGMDTPSEKSPFLHPPELRQELEKVVGKPLQLDVR
                     FLGFMTNDERRNSVLDEMRQLDEQWTQVGLHLLQNRRQDVMMFVFMSIDTVQHYFWQF
                     MDETHFLHDPAAKEKFGNAVRDVYSRLDATLGKFLERADAETSVFVVSDHGGGPVSDR
                     TVYLNRYLAQIGLLNYRKNTDNPLQKAARALMRGAYNLLRDNLSSRQKVWLADLLPAL
                     RDKAETSYTSFTEIDFERTQAFCSEVLASPPSIWINLRGVRPQGIVDPADYETVRNKV
                     IEKLKELKDPRTGEQV"
BASE COUNT          294 a          330 c          330 g          305 t
ORIGIN      
        1 tgacttgctc gcccgtgcgg ggatctttca gttccttgag tttctctatg accttgttac
       61 gaacggtttc gtaatcggcc ggatcaacaa taccttgtgg cctaactcct ctaaggttaa
      121 tccagatact cggcggcgaa gcgagaactt cactgcaaaa agcctgcgtc cgttcaaagt
      181 caatctcggt aaacgaagta taggaagtct cagccttatc tcgtaaggcc ggcaggagat
      241 cagcgagcca gaccttttgc cgcgagctaa ggttatcccg aagcaggtta taagcgccac
      301 gcattagcgc ccgcgccgct ttttgcaacg ggttgtcggt gttcttgcga taattaagca
      361 ggccgatttg agcgagataa cgattcaggt aaaccgtccg gtctgagacc ggtccgccac
      421 cgtgatcgga tacaacgaag acggaagtct cagcatccgc gcgctcaaga aacttaccca
      481 gagttgcatc aaggcggctg tagacatcgc ggacagcatt accgaatttt tctttcgcag
      541 ccggatcgtg caaaaagtgc gtctcgtcca tgaactgcca gaaatagtgc tggacggtgt
      601 caatcgacat gaagacgaac atcatcacat cctgtctccg attctgaaga aggtgcaggc
      661 cgacctgagt ccattgttcg tcgagctgac gcatctcatc gagcacactg ttgcgtcgct
      721 cgtcattcgt catgaagcca aggaatcgga cgtcaagttg caaaggcttg cccaccactt
      781 tctccaactc ctgcctcagc tctggcggat gaaggaaagg gctcttttca gaaggggtgt
      841 ccatcccgga cgtttgataa ccattcaatg gttcgggtgg atacgtgaat gggacgttac
      901 agatgccggt agtaatgccc gcgtcattaa gaattttcca aaccgtgcgc gtccggcgtg
      961 aggtcgcgtt gctatagctc aaggcatagc tatctggctt cgtctccatg aagtggaaaa
     1021 tgccatgctt gccggggttt tttccggtcg taaatgaagt ccaggccggg ggcgtgatcg
     1081 ggggaaaaac cgattcaaac ttcccggaag tgccctcact catcagtttg gcgagattag
     1141 gcatgtgccc ttccgcaacc catggtttcg cgagatccca agtagccgca tccaacccga
     1201 caatcattac tttaggagcc ttcatattgc taagttcgtg tttctccggt tagaggctg
//
LOCUS       DATCGC010001213         1692 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_484046, whole genome shotgun sequence.
ACCESSION   DATCGC010001213 DATCGC010000000
VERSION     DATCGC010001213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1692)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1692)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1692
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_484046"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            145..924
                     /locus_tag="VIJ87_11760"
     CDS             145..924
                     /locus_tag="VIJ87_11760"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HEY5445113.1"
                     /translation="MTDATRIRALVIDDEPLARDMIREMLVSDSEAEVVAECANGREA
                     VEAIKSLSPDLIFLDIQMPEVGGFEVLESFESNHAPYVIFATAYDQYAVRAFEVHAFD
                     YLLKPFDQERFDAAWKRAKAQIKLDRTGERDRHILALLEELKAGPRYLERLVVKTGGR
                     VFFLDVAEIHCIEAEGNYVRVHDNAKHYLLRETISGLEGQLDPKQFLRIHRSAIVKID
                     KIKELQPWFHGEYRIILENGKQLTLSRNYRANLQDAVGNAL"
     gene            1170..1550
                     /locus_tag="VIJ87_11765"
     CDS             1170..1550
                     /locus_tag="VIJ87_11765"
                     /inference="COORDINATES: protein motif:HMM:NF014950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY5445114.1"
                     /translation="MSSQALSENAASQEQIASEGLSESNMDDKINILRETVLQLLQEV
                     ESLTIAAPAGLKSGARLDEEVRQFEMNLIRTALGRTAGSQTRAAKLLGLKLTTLNAKI
                     KRYHITPHGYQGGFSRTAQQGSAA"
BASE COUNT          427 a          412 c          445 g          408 t
ORIGIN      
        1 taaacgatta cgactgtctt gaagcgtctg caagttcttc tttttggttt ccgccacaag
       61 ttcgctcttg gtggtgttca tttttataga gttgcctcac ggtttgcgat cgcagtttga
      121 actggaaaag aacagggagg caaggtgacg gacgcaaccc gcattcgagc gttagtcatc
      181 gatgacgaac cattagcgcg cgacatgatt cgcgaaatgc tcgtgagcga ttccgaggcg
      241 gaagttgtag cggaatgcgc aaacggccga gaggcggttg aggcgatcaa atctttgtct
      301 cccgatttga tcttcctcga cattcaaatg cctgaagtcg gtggcttcga ggtacttgaa
      361 tcctttgaat cgaatcatgc gccctacgtc atctttgcaa ctgcatacga tcaatacgct
      421 gtgcgtgcat ttgaagtcca cgcgtttgat tatttgttga agcccttcga tcaggagcgg
      481 ttcgacgcag cttggaaacg agccaaagct caaatcaagc tcgatcgcac cggagaacgt
      541 gatcgacata ttcttgccct cctcgaggaa ttgaaagccg gtcctcgtta tctcgaaaga
      601 ctagttgtca aaacaggtgg acgagtgttc ttcctcgacg tcgctgagat ccactgcatc
      661 gaggcggagg ggaactacgt tcgcgttcac gacaacgcga aacattatct tcttcgcgag
      721 acgattagcg gtctggaagg gcagttggat ccaaaacagt tcctacgtat tcatcgatcg
      781 gcaatcgtta agatcgacaa gatcaaggaa ctccagccgt ggtttcatgg tgagtatcga
      841 atcattctgg agaacgggaa gcagcttacg ttaagccgaa attatcgtgc gaaccttcag
      901 gacgcggttg gcaacgcgct ctaactttaa ggactttgtc cactaacatg gccgctccat
      961 cacaagtttt agccgttctg tcacacagtt agttaccggg aatccgactt ttgccaatat
     1021 atcctcgtgc cgaggtcaca gtgcattgtt tgactgagcg gtttccatct aaggagtaaa
     1081 cgaacgaacg atgttggcta aggtcttatg gctccccaat catggtccag acaacgtgaa
     1141 gaacaagtga agttatcagg aggtgagtca tgagtagtca agcgctctcg gaaaacgcgg
     1201 cgagccagga gcagatagct agtgaagggc tcagcgaaag caacatggac gataagatca
     1261 atatcttgag ggagacagtc cttcaacttt tgcaggaggt tgaatccttg acgatcgcgg
     1321 cgccggcagg tttgaagagt ggtgcgcgcc tggatgagga ggttcgtcaa tttgagatga
     1381 atctgattcg tactgcgctc ggcaggacag ccggtagtca aactcgagcg gccaaactat
     1441 tgggcttaaa acttacaact ctcaacgcca aaattaagcg ctaccacatc acgccgcacg
     1501 gttaccaggg aggttttagt agaactgcac aacaaggcag cgctgcctga accttttcaa
     1561 ttcaaatcac tgctagcgct gttgcgccgg gccgatcttc gcagttgcgg aaaagccaag
     1621 atcgtcccgg cgtaatgttg tttccagcgc gccatcaggc caccaccctc caaagttagc
     1681 actcgccctt gg
//
LOCUS       DATCGC010001214         2042 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_85630, whole genome shotgun sequence.
ACCESSION   DATCGC010001214 DATCGC010000000
VERSION     DATCGC010001214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2042
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85630"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            93..1208
                     /gene="dnaN"
                     /locus_tag="VIJ87_11770"
     CDS             93..1208
                     /gene="dnaN"
                     /locus_tag="VIJ87_11770"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HEY5445115.1"
                     /translation="MQFVVSKQNLQKELAFVQGVVEKKNTIPVLSNILIESVGEGTIR
                     ITGTDLDVTIRCDMDADEIATPGAICVQAKKLFEIARLLPDAPVSFKKEENDWVTVKC
                     DRARFKLVGVARDAFPEVPSFKSAPTKIPANVLKTFIDRTIFAITQEESRYTLSGAKF
                     VLDETSAKMVTTDGHRLAYVERKNVTKNGDQQTIDTLIPRKTLAELTKLTAGFDEDIS
                     LGVDENHIYFEIGTRLLISRMLYGQFPNYEMVMPKNNDKMVEFESSLLNQAIRRVALM
                     ADERSHAIRFHLEPNQLVISSQNAEEGEANEALQTDYNGEETDIGFNAQYLQEFLNVI
                     GDAKIEFEFKDGNSQAQLQPAEKADYDYKYIVMPMRI"
     gene            1311..>2042
                     /gene="recF"
                     /locus_tag="VIJ87_11775"
     CDS             1311..>2042
                     /gene="recF"
                     /locus_tag="VIJ87_11775"
                     /inference="COORDINATES: protein motif:HMM:TIGR00611.1"
                     /note="All proteins in this family for which functions are
                     known are DNA-binding proteins that assist the
                     filamentation of RecA onto DNA for the initiation of
                     recombination or recombinational repair; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication and repair protein RecF"
                     /protein_id="HEY5445116.1"
                     /translation="MLLAEIEAINFRNLSGKIVWGPQLNIIYGNNGQGKTSWLEAIHI
                     LARTKSFRTQRLQETIKFGERIATISGRVIAGVDLERELQVTLQDNSKAILVNAKREA
                     LTRYLSQLQVFSFTAADLEVVRGIPEARRRFLDKGISSIRPAYLQTIVDYGKVIKQKN
                     KLLQVANESEFSLEKVADLVAPWNDQLVKLAVSIHHEREDYVAGLNTQIERQFFDRRD
                     LATRYVSSLEGKGDLSDYEAILRERI"
BASE COUNT          597 a          441 c          510 g          494 t
ORIGIN      
        1 ctactactgg atatatcaac ggtttgtttt attggttagc agaagaatag gcgcgcggaa
       61 aactcacggc gcggcgtgaa ggagcactag caatgcaatt tgtcgtaagc aaacaaaacc
      121 tgcaaaaaga actcgctttc gtgcagggag tcgtcgagaa gaaaaatacc attccggttc
      181 tctccaacat tctcatcgag tccgttggtg aaggcacgat cagaatcact ggaactgatt
      241 tggacgtgac tattcgttgc gatatggatg ccgatgagat cgcaacaccc ggcgctattt
      301 gtgttcaggc taagaagttg tttgaaattg cgcgcctgct tcctgatgca cctgtgagtt
      361 tcaaaaagga agagaatgat tgggtaacag tgaaatgcga ccgcgcacgc ttcaagttag
      421 ttggtgtggc cagggatgct tttcccgaag tgccttcgtt caaatcagcg ccaactaaga
      481 ttccagctaa cgtgctgaag actttcatcg atcgaaccat ctttgcgatc acgcaagaag
      541 aatcgcgtta tacgctttct ggtgcgaagt tcgtcctcga tgagacgagc gccaagatgg
      601 ttacgaccga tggtcaccgc cttgcttacg tcgagcgtaa gaacgtcaca aagaatggcg
      661 atcagcaaac aatagacacg ttgattcccc ggaagactct tgcagagttg acgaaactaa
      721 ccgctggatt tgacgaagat atcagcctcg gagtggacga gaatcacatc tatttcgaaa
      781 taggaactcg tttactcatt tcacgaatgc tgtatggcca gtttccgaat tacgaaatgg
      841 tgatgccaaa gaacaacgat aagatggttg agtttgaaag cagtttgctg aaccaggcga
      901 tacgtcgagt tgccttaatg gctgatgaaa gatcgcatgc gattcgtttt catcttgaac
      961 cgaaccaact ggtgataagt tcgcaaaacg cggaggaagg cgaagcaaac gaagccttgc
     1021 agactgatta caatggggaa gaaaccgata ttggtttcaa cgcacaatac cttcaggagt
     1081 tcttaaacgt tattggcgat gcaaagattg aatttgaatt caaggatgga aactcccagg
     1141 cgcagttgca gcccgcagag aaagctgatt acgattacaa gtacattgta atgcctatgc
     1201 ggatctgaaa agatttcgca cgactagtaa aaagaagcgc tctcgagtcg tacacgagag
     1261 cgctttttat ttagcggagt tgaatcgttt cactatgcta aaatcctacg atgctgttgg
     1321 ctgaaattga ggctattaac ttccgaaatc tgtccggaaa gatcgtttgg gggccacagc
     1381 ttaatatcat ctacggcaac aacggacagg gtaagacaag ctggttggaa gccattcaca
     1441 tcctcgcccg aacaaaatcc tttcgcacgc aacggctcca ggaaacaatc aagtttgggg
     1501 aacggatcgc caccattagt ggtcgtgtga ttgccggcgt agatctggaa agagaactgc
     1561 aggtaaccct tcaagataat tcaaaagcta tcctcgtcaa tgcaaagcga gaagcgctga
     1621 ctcgctatct ttcacagctt caggtgttct cgtttacggc agctgacctg gaagtcgttc
     1681 gtgggatacc agaagcgcgt cggcggtttt tagacaaagg catttcgtcg attaggccag
     1741 cctatctgca aacgattgtt gattacggaa aagtcatcaa acagaaaaat aaacttctac
     1801 aggttgcaaa cgagagtgaa ttcagtctcg agaaagtcgc agatttggtc gcaccatgga
     1861 acgatcaact tgtgaaactg gctgtgagta ttcaccacga aagagaggat tatgtagcag
     1921 gtctcaacac ccaaatagag cgacaattct ttgatcgacg cgacctcgca actcgatatg
     1981 tttcgtcact tgaaggtaag ggagatttga gtgattacga agccatccta cgggaaagaa
     2041 tt
//
LOCUS       DATCGC010001215         1042 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_484098, whole genome shotgun sequence.
ACCESSION   DATCGC010001215 DATCGC010000000
VERSION     DATCGC010001215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1042
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_484098"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            181..975
                     /locus_tag="VIJ87_11780"
     CDS             181..975
                     /locus_tag="VIJ87_11780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445117.1"
                     /translation="MSAVNRYFTFRTSLFKLAWLALIVAVCVNGQVPTHDDVPGRARS
                     SYYNLTRKGFKGFTATVDPNWEIILANAATSENLKVFRDVKFLMVVDGNGVVTVRHEL
                     GPNAAKPNLETIVQKIHYDMERLIVGFFNTWRIFMVSSPFPETENPIKLETPGDQYRL
                     VYNRQAGEVVIMLTRDLLITDWSLTSPTAKRTVKPHFQKTADGFLLTSYQGLFEPVGA
                     GIKTTLDFTIEYQDVSGLKLPYKVQLKGMHGSEPVEAELVFRVKSD"
BASE COUNT          245 a          248 c          269 g          280 t
ORIGIN      
        1 gctgtcggat agcgagcatt gttgtcgata ccgggactgc gcgtttcgat tccgattccc
       61 gggcttcctg cgcaagcttt gggcgactaa ctcccggcac cggcgtcatc aatatgctcg
      121 ttcctaatat tagatagtta ttctctgtgt aatcctatag attgaagtca attccgttgt
      181 atgagcgcag tcaataggta cttcactttc aggacgtcgc tttttaaatt ggcgtggttg
      241 gccctcatcg tggcggtgtg tgtcaatggt caggtgccta ctcacgacga tgtgcctggc
      301 cgggcgcgga gctcatacta caacctgaca agaaaaggtt ttaagggttt caccgcgacc
      361 gtagatccca attgggagat catattagcg aacgctgcca cttcggaaaa cctgaaggtg
      421 tttcgagatg tgaagttctt gatggtcgtt gatggtaatg gtgtcgtcac tgttcgtcac
      481 gaacttggcc ctaatgccgc caagcctaac ttagaaacga tcgttcagaa gattcactac
      541 gacatggagc ggctgatagt aggttttttc aatacgtggc ggatatttat ggtgtcgtcg
      601 ccatttcccg agacagaaaa cccgatcaag ttagagactc cgggtgacca ataccggctc
      661 gtttacaaca ggcaagccgg tgaagtggtg atcatgttga cccgtgattt actgattacg
      721 gactggagcc ttactagtcc cacagcgaag aggacggtta agccgcattt tcagaaaact
      781 gctgacggtt ttctcttaac ctcgtaccag ggactctttg aacctgtcgg tgcgggcatt
      841 aaaacaacct tggacttcac aatcgagtat caggatgtca gcggactaaa gctcccctac
      901 aaggtccagc ttaagggaat gcatggcagt gaacctgtcg aggccgaact cgtattcaga
      961 gtgaagagtg actagtgagt tgcccacagc tgcctgctgt taattgctgc tgcactaatg
     1021 tattttcctc ccaatgcttc ct
//
LOCUS       DATCGC010001216         1978 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_216243, whole genome shotgun sequence.
ACCESSION   DATCGC010001216 DATCGC010000000
VERSION     DATCGC010001216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1978)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1978)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1978
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216243"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1295
                     /locus_tag="VIJ87_11785"
     CDS             <1..1295
                     /locus_tag="VIJ87_11785"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEY5445118.1"
                     /translation="CPGTFTLGWLPDNTHVYFESERDGYAHLYSVSIDGGEPTQLTSG
                     QFEVSDVRLSRDKTKFYFISSEGSPFERHLYSMSTSGGLRTRITTLPGNNAVDISPDE
                     TTLADIRSYSNKPPELYLLPNKPAEGSAEARSVTTSPIPEFFAHDWIDPRIVSFKARD
                     GATVYGRIYMPSTWKKGGPAVFFVHGAGYLQNVHRWWSSYYREYMFHHLLMERGFLVL
                     DIDYRGSAGYGRDWRTGIYRHMGGKDLSDHIDAVNYLVKEHGVDPKRIGLYGGSYGGF
                     ITLMAMFTEPDAFAAGAALRPVTDWAHYANGYTANILNLPQNDAEAYRKSSPIYFASG
                     LKGALLICHGMVDTNVNFQDSVRLVEKLIELRKENWSVAPYPVEDHGFEREESWADEY
                     KRILKLFVDNLKPGTYVTKPMLKSTSRSTKTKNAATGQ"
     gene            1501..>1978
                     /locus_tag="VIJ87_11790"
     CDS             1501..>1978
                     /locus_tag="VIJ87_11790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445119.1"
                     /translation="MSIFVTTLLAVACLIAPLTHGQQITRDPRYPAHWWTPVSEVNKP
                     DWEILPQEAGPGEVILSKRNELGLLSNFAATPFTYRGKRYASLEGFWQMMLYPEGPKD
                     RRAKSPGIEWKYTRDQVAQMTAFEAKSAGTLAEENMKRMGIDWATFEGKPFTYRSAV"
BASE COUNT          508 a          502 c          526 g          442 t
ORIGIN      
        1 gttgtcccgg tacattcact ctcggctggc tgccagacaa cactcacgtc tacttcgagt
       61 cagaacgtga tggctacgca catctgtatt cagtttcaat cgacggcgga gaaccaaccc
      121 aactaacatc tggacaattt gaggtttctg acgtccgact ttctcgcgac aaaacaaagt
      181 tctactttat ttcaagtgag ggcagcccat tcgaacgaca tttgtattcg atgtcgacaa
      241 gtggtggatt acgaaccagg atcacgacgc taccgggaaa caatgctgtc gatatcagcc
      301 cggacgaaac gacactggct gacattcgtt cttacagcaa caaacctccg gaactttatc
      361 tattgccaaa caagccagcg gaaggatcgg ccgaagccag gtcagtaaca acgtccccga
      421 tacccgagtt cttcgcgcac gactggattg acccacgaat agtcagcttc aaggcgcgtg
      481 acggcgccac agtatacggt cgtatatata tgccctcgac ttggaagaaa ggtggcccgg
      541 cagtgttctt cgtgcacggc gcaggttatc tgcagaacgt gcatcgctgg tggagttctt
      601 attatcgcga gtacatgttt caccacttgt taatggagcg cggcttcctg gtcctggaca
      661 ttgattaccg aggaagcgcc ggatacggac gcgactggcg cacgggtatt tatcgtcaca
      721 tgggtggaaa ggatctcagc gatcacatcg acgcggtgaa ttacctggtt aaggaacatg
      781 gagttgatcc taaacgaatt ggtctctacg gcggcagcta cggtggcttc attactctga
      841 tggcaatgtt caccgagcct gatgcgtttg ctgccggtgc tgcgctacga ccggtcacag
      901 actgggcgca ctacgcgaat ggctacaccg cgaacatcct gaatcttcca cagaacgacg
      961 ccgaggccta tcgaaagagt tcgccgatct attttgcgag cggactgaaa ggcgcactct
     1021 tgatttgcca tggcatggtc gatacgaacg tgaacttcca ggattcggtt cgactggtcg
     1081 agaagctgat agagttaaga aaagaaaact ggtcagttgc accgtacccg gttgaggatc
     1141 acggtttcga acgagaagag agttgggcag atgaatacaa acgaatactg aagctgtttg
     1201 ttgataatct gaagccggga acgtacgtga cgaaaccgat gttgaaatcg acgtcgcgtt
     1261 caactaagac gaagaacgcg gccacgggcc aatgagctcc aatgtcttgc gttggatttg
     1321 accccagagg ggttacatgt ttataggcac aacgatgtct cacctccggc gccattcgga
     1381 ggggcggagt gaatgattgc tttgaattcg aactttcgct ccgcccctcc gaatggcgct
     1441 aaagtgatag gggctctagt ctataaacat tgcactcctc cggagtgaag aacaataagt
     1501 atgtcgattt ttgtgactac gctgctcgcc gtcgcttgtt tgatcgctcc acttacacat
     1561 ggtcaacaaa tcactcgaga cccgcgctat ccggcacact ggtggacgcc agtctccgaa
     1621 gtgaacaaac ctgactggga gatacttccg caagaagctg gtccaggtga agtcatactc
     1681 tcaaaacgga acgagctcgg actgttatca aactttgccg ccacgccgtt cacttatcga
     1741 ggcaaacgct acgcgagtct cgaaggcttc tggcagatga tgctttatcc ggaagggcca
     1801 aaagaccggc gcgcaaaatc cccgggaatc gaatggaaat acactcgcga ccaggtggcg
     1861 cagatgactg ctttcgaagc gaaatctgcc ggcacactcg cagaagagaa catgaagcga
     1921 atgggaattg actgggcgac gtttgaaggg aagcctttca cttaccgatc agcagtga
//
LOCUS       DATCGC010001217         2171 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_350218, whole genome shotgun sequence.
ACCESSION   DATCGC010001217 DATCGC010000000
VERSION     DATCGC010001217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2171)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2171)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2171
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_350218"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            141..335
                     /gene="rpmB"
                     /locus_tag="VIJ87_11795"
     CDS             141..335
                     /gene="rpmB"
                     /locus_tag="VIJ87_11795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014398134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HEY5445120.1"
                     /translation="MAKRCEVCGKGPQFGNNVSHANNRTPRRFDPNLQSIRVQQPQGS
                     AKRMKVCTSCIKAGKVSKAA"
     gene            complement(394..777)
                     /locus_tag="VIJ87_11800"
     CDS             complement(394..777)
                     /locus_tag="VIJ87_11800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016291667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEY5445121.1"
                     /translation="MKLRIQTETAPAAIGPYSQAIRANGLVFCSGQIPIDPATGKFVA
                     GGIAEQTEQVLKNLSAVLEAAGSSLERVVKTTVFLADMAEFAEMNEVYGRFFTGQTPA
                     RATVAAAGLPRDARVEIEAVALATE"
     gene            complement(864..>2171)
                     /locus_tag="VIJ87_11805"
     CDS             complement(864..>2171)
                     /locus_tag="VIJ87_11805"
                     /inference="COORDINATES: protein motif:HMM:NF040246.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TGS domain-containing protein"
                     /protein_id="HEY5445122.1"
                     /translation="KDWIATPRDNLYQSLHTSVIGSNVQSFEVQIRTEEMHHVAEEGV
                     AAHWKYKEGKRGAHDDDQALQALRSLVEWTQEVKDSKDFLDSLKLDLYPKDVYAFTPM
                     GKVIQLPRGATPVDFAYMIHSEVGNTCTGSRINGRIVPLRTQIQNGDVVEIITSSNSH
                     PSRDWLNFIVTSRARNRVRHWVAEQQRAESMEIGRKLFEKEAGRFQLSPRKLLNDNDK
                     QMKQVASDYGYGRVEDLLAAIGYGKLVPRNVIAKYLGPEQFEQLDKQKESRLRSGVRA
                     VKRLIRLGDDSILVRGVDDLMVTRARCCNPLHGEEIIGYITRGKGVAVHTKRCKNVNQ
                     LMVNRERIVEVEWAGRPEKTAYAVKLLAITENRTGMIAGITGAISDMKTGIRDARASV
                     ASDERGHIEVTVEVFDVKHLDKVIGSIKGVPGVLDVERMQGMV"
BASE COUNT          524 a          608 c          501 g          538 t
ORIGIN      
        1 cccggccgag cgttcacgct gcttgacgac ctagaaatgc gtttgctata aaccttgatt
       61 ctgattacgg caagattgct atctgtgtga tgccgtaaac attcataaga aaccctagta
      121 ccttggaggt tgcaaaaata atggccaaac gttgcgaagt ctgcggcaaa ggacctcaat
      181 tcggaaataa cgtctctcat gcgaacaatc gaacgccgcg gaggtttgac ccaaatctac
      241 agtcgattcg ggttcagcaa ccccagggca gcgcgaaacg gatgaaggtg tgcaccagct
      301 gtattaaagc cggcaaggtt tcaaaagccg cgtagaaaca ttcaaatatc aagccccaga
      361 ggatcggtat caccttggta ccgatctttt tctttactcc gtagcgagtg ctacagcttc
      421 aatctcaacc ctggcatcac gaggcaaacc agcggccgcg accgtcgctc gagccggagt
      481 ctgaccggta aaaaacctgc catagacttc gttcatttcc gcaaactctg ccatatccgc
      541 caggaatacg gtggttttaa ctaccctctc aaggctacta cctgccgctt cgagaaccgc
      601 tgaaaggttc ttgagaacct gctctgtctg ctcggcaatt ccaccagcca caaacttacc
      661 cgttgcaggg tcgatgggta tttgcccgga acaaaacacg aggccattgg cgcgaatggc
      721 ctgtgaataa gggccaatcg cagcaggtgc agtttcagtt tgaattcgta gcttcacaat
      781 gtcttaaacg gcttattttt actgccgaaa acaaaggcgg gattctagca gaaaccatcc
      841 actaagggaa aagcagccgc taactaaacc attccctgca ttcgctccac gtccaaaacg
      901 ccgggcactc cctttataga accaatcacc ttgtcgagat gtttgacgtc aaagacctcc
      961 accgttacct caatgtgtcc cctctcatct gaggcgacgg aagccctggc gtctcggatt
     1021 ccggtcttca tgtccgagat agctcccgta atgccagcaa tcattccggt ccggttctcg
     1081 gtaatggcga gcaacttcac agcataggcg gtcttctcgg gccgcccggc ccattcaacc
     1141 tcgacgatac gctcgcgatt caccattaac tgatttacgt tcttacatcg tttcgtgtgt
     1201 acagcgactc cttttccacg agtgatatag ccgattattt cttcgccatg taagggatta
     1261 caacaacgcg ccctggttac catcaaatcg tcgactcccc tgacaagaat ggagtcgtct
     1321 cctaaacgga tcagacgttt gacggcgcgt acgccgctac gcagtcgcga ttctttttgc
     1381 ttatcgagct gctcaaactg ttccggcccg agatacttcg ctatcacatt ccgcggcacc
     1441 aatttcccat agccaatcgc cgcaagcaga tcttctacgc gcccatatcc ataatcactg
     1501 gcgacctgct tcatctgctt atcattgtcg ttcaggagtt ttctgggtga tagttgaaat
     1561 cgtccagcct ctttttcaaa aagcttgcga ccgatctcca tagactcggc cctctgctgt
     1621 tcagcaaccc agtgtcggac tctgtttctg gctcgcgagg tgacaataaa gttcaaccaa
     1681 tctctggaag ggtgagaatt gctactagtg ataatctcaa caacgtcacc attctgaatc
     1741 tgtgtgcgaa gcggaactat ccgaccattg atgcgcgatc ccgtgcacgt attgccaact
     1801 tccgagtgaa tcatgtacgc gaaatcaacg ggagtcgcgc ctcggggtag ctggatgacc
     1861 ttgcccattg gcgtgaaggc gtaaacatct tttggataga gatcgagctt gagagagtcc
     1921 aggaagtcct ttgaatcttt aacctcctgc gtccattcaa cgagcgagcg caaggcttgc
     1981 aaggcctgat cgtcatcgtg agccccgcgt ttgccctctt tgtatttcca atgggccgcg
     2041 acgccttctt cggcaacgtg atgcatttcc tcagtgcgaa tttgaacctc aaatgactgc
     2101 acgttcgaac cgatcaccga tgtatggagc gactgataca gattgtctcg cggtgttgct
     2161 atccagtctt t
//
LOCUS       DATCGC010001218         1049 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_414969, whole genome shotgun sequence.
ACCESSION   DATCGC010001218 DATCGC010000000
VERSION     DATCGC010001218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1049)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1049)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1049
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_414969"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..943
                     /locus_tag="VIJ87_11810"
     CDS             <1..943
                     /locus_tag="VIJ87_11810"
                     /inference="COORDINATES: protein motif:HMM:NF042649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEY5445123.1"
                     /translation="PIAGGNPGVLKRGMGCAVGTWGGGGNNACKVDVTIGRDGSVLVA
                     VGTQDLGTGTRTFTRAIVAEEFGLQITDIKEEIGNSKLGGANDSGGSTTAASLSPSVK
                     DGAYKARMLFAERVASLFDNPKPEEITFANGNVTGKGKTIAWKQACAALPSAGVTGHG
                     VWRSELQASGIHGASFAEVEVDVETGHIKPIKMVHVQDGGLPLNRLTMESQINGGMIQ
                     ALGMALWEGRVMDAYLGMQLNPSFNDYKLPGTLEMPEMIPIIDDDDKREVVIGIAEGC
                     IIPALGAVVNAVFNACGVRVRESPLTPDKILMGLMKA"
BASE COUNT          269 a          254 c          307 g          219 t
ORIGIN      
        1 cccgattgct ggtggaaacc ctggcgtgtt gaaacgggga atgggttgcg ctgtcggcac
       61 gtggggtggc ggtggaaaca acgcttgcaa agttgatgtc acgattggga gagacggttc
      121 agtcctggtg gcagtcggaa cacaggacct aggcaccggt accaggacat ttactcgtgc
      181 aatcgttgct gaagaatttg gtttacagat cacagatatc aaagaagaga tcggaaactc
      241 aaaacttggc ggggcaaacg actcgggtgg ttcgacaact gctgcatcat tgtcaccctc
      301 tgtgaaagac ggcgcctaca aggcgcgcat gttgtttgcc gaacgcgttg cttcgctatt
      361 cgacaatcca aaacccgaag agatcacatt cgctaatgga aacgtcaccg gcaagggaaa
      421 aacaatcgcg tggaaacaag cttgcgcggc attgccttca gccggtgtaa ctggacatgg
      481 tgtttggcgc tcggaacttc aagcgagcgg catccacggc gcctcattcg cagaagtaga
      541 agtcgacgtc gagacaggac acatcaaacc aatcaagatg gtccacgtgc aggacggtgg
      601 cctccctctc aatcgcttaa ccatggagag tcagatcaac ggtggaatga tccaggcgct
      661 tggcatggcg ttgtgggaag gtcgggtgat ggacgcgtat ctcggcatgc aactcaatcc
      721 gagcttcaac gattacaaac ttccagggac actcgaaatg ccggaaatga ttcccatcat
      781 cgacgacgat gacaaacgcg aagtcgtgat cggtatcgct gaaggctgca tcattccagc
      841 tctcggtgcg gtggttaacg ccgtattcaa tgcctgcggt gtgcgcgtca gagaaagtcc
      901 gctgacgcct gacaagatct tgatgggttt gatgaaagcg tgaaatctag atgttgtgga
      961 ctggggtcag taccaccacg cggtagcgtg tggctcggca ctccaaacta tggcaacgac
     1021 aagctaaagc ttatcggaca ttgaggaca
//
LOCUS       DATCGC010001219         1823 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_383343, whole genome shotgun sequence.
ACCESSION   DATCGC010001219 DATCGC010000000
VERSION     DATCGC010001219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1823)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1823)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1823
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_383343"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1043
                     /locus_tag="VIJ87_11815"
     CDS             <1..1043
                     /locus_tag="VIJ87_11815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445124.1"
                     /translation="IARNPNEKDALLMVPGAGLTLAEQMGLSDKSDRISGANGIGNPQ
                     YQREQDSPFSRLQLLADLSRPPQVKFNDLATAVNTGVVEENPLNFDLRVDFFRQSDER
                     VITAFTIQAENKDLVFQDSGGLQQARMNIFGRITSVAGRRMGVFEDPVITAATPEELT
                     EAKDRKSAYQKALPLAPGTYKVDVIVRDVTSGATGIKHLGFTVPRYDQQKLSTSTMIL
                     AAKLESLSDQPAVGQFVIGTTKVIPNVAGIYHRGQPVGVYIQIYNAGIDQTTLRPSVD
                     VEYVLVKDGKELGKQTEDWRGMSDSGQRLTLARLIDTRALPAGDYDVTIRIRDRVTGQ
                     SLAPSQKFSVVQ"
     gene            1206..>1823
                     /locus_tag="VIJ87_11820"
     CDS             1206..>1823
                     /locus_tag="VIJ87_11820"
                     /inference="COORDINATES: protein motif:HMM:TIGR04514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GWxTD domain-containing protein"
                     /protein_id="HEY5445125.1"
                     /translation="MSISIVRRFTAAALLTLVSILPIQAQQAKQNPDEKPRKVKQELK
                     TAYKNWIQDVDVILTQSERDSWPKLATDDEREQFIKFVWDSRDPDPDTEENEFKDQFY
                     ERVTYANEHFSSGKPGRTTDRGRIYIKFGKPDDIESHPAGGNYERPSYEGGGSTSTYP
                     FEKWFYRYIPNVASGVELEFVDPTGSGEYRLARNPYEKDALALVPG"
BASE COUNT          468 a          498 c          436 g          421 t
ORIGIN      
        1 gaatagcgag aaaccccaac gaaaaagatg cgctcttgat ggtacccggt gccggcctca
       61 cgttggccga acaaatgggt ctttcagaca aatccgaccg tatctcgggc gccaacggaa
      121 tcggcaatcc ccaatatcag cgtgaacaag attccccgtt ttcacgacta cagttgttgg
      181 ctgacttgag cagaccacca caagttaagt tcaatgatct cgctaccgct gttaacaccg
      241 gtgtcgttga agaaaacccg ctcaactttg atctgcgcgt cgacttcttc cgccagtcag
      301 acgaaagagt aataactgcc ttcactattc aagctgaaaa caaagatctc gtatttcagg
      361 acagcggcgg tctacaacag gcccgcatga atatttttgg ccgtattaca tcggtggccg
      421 gacgtcgaat gggagtcttt gaagatcctg tgatcactgc cgcaactcca gaggaactta
      481 ctgaagccaa ggaccgcaag tcggcctatc aaaaagctct gccactagcg cccggaactt
      541 acaaggttga cgtcatcgtt cgtgatgtca cttccggtgc tactggcatc aagcacctcg
      601 gtttcactgt tcccaggtac gaccagcaga aactctccac ctccacgatg attctcgctg
      661 ccaagctgga aagtctttct gatcagcctg cagtgggaca gtttgtgatc ggtaccacga
      721 aagtcattcc taacgttgcc ggcatttacc atcgtggtca gcccgtcggt gtctatatcc
      781 aaatctacaa tgcaggaatt gatcaaacca ccttgcgccc atcagtcgat gttgaatatg
      841 tactggtgaa agatggaaaa gaattaggca agcaaaccga agactggcgc ggtatgagtg
      901 attccggtca gcgattaacg ttggcccgtt tgattgacac cagagcgttg ccggctggcg
      961 actacgacgt tacgattcgt attcgtgacc gcgtcaccgg tcaatcgctt gcgccttcgc
     1021 agaaattcag cgttgttcag taaagcgtct aagagttgaa tgcaggtaac tccccttgcc
     1081 tgcattcaac caatcacctt tccccgcata agcgttcttg agattttgct ttctttcagc
     1141 cgtcgtctcc ccggcccggc tccagtccgt tagtcgttaa cgacttaatc tgaaaggaac
     1201 tgcacatgtc gatctcgatc gtccgcaggt tcactgcggc agcgctccta actctcgttt
     1261 cgattcttcc aattcaggcc caacaagcta agcaaaaccc tgacgagaaa cctcgtaaag
     1321 tgaaacaaga gttgaagact gcttacaaga attggattca ggacgtcgac gtaattctca
     1381 cccaatctga gcgagacagt tggccgaaac ttgcaaccga cgatgaacgt gaacagttca
     1441 tcaagttcgt ctgggactcg cgcgatccgg atccggatac cgaggagaac gagttcaaag
     1501 atcaattcta cgaacgcgtt acttacgcaa acgaacactt ctcatccggc aaaccgggac
     1561 gaacgaccga tcgcggccgc atctacatca agtttggcaa gcctgacgac atcgagtctc
     1621 atccggctgg cggcaattac gaacgtcctt cctatgaagg tggcggttca acgtccacgt
     1681 atccgtttga gaaatggttt tatcgataca taccaaatgt cgcgagcgga gttgaactgg
     1741 agtttgttga cccaaccgga tcgggcgagt accgactcgc gcgcaaccct tacgaaaagg
     1801 acgcactcgc acttgtgccg gga
//
LOCUS       DATCGC010001220         1237 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_216311, whole genome shotgun sequence.
ACCESSION   DATCGC010001220 DATCGC010000000
VERSION     DATCGC010001220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1237)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1237)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1237
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216311"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..265
                     /locus_tag="VIJ87_11825"
     CDS             <1..265
                     /locus_tag="VIJ87_11825"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HEY5445126.1"
                     /translation="VAAIHYDKSKYEVFNLGESRTVELRELIGLLEKELDGHAVIDRQ
                     PSQPGDVPQTFADIEKARRLLGYNPQTQIEEGIHRFVEWFRTT"
     gene            404..1186
                     /locus_tag="VIJ87_11830"
     CDS             404..1186
                     /locus_tag="VIJ87_11830"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEY5445127.1"
                     /translation="MASTANVADPSLPQQMQQHTYSLMYEVEGHHWWFAGRRQIITSF
                     IEHIFTGWQGKRPRILDVGCGTGANLEMLGEFGDAEGVDVSTDALSFCRQRGLDSVRL
                     GEAEKLPYPDQSFDLVTALDVVEHLDDDLAGLKEMRRVLKPGGRAMMFVPAFMFLWGV
                     QDDVSHHRRRYTMKQLKERVRAAGFEIERATFANITFFLPTLVGRVLMRVTGLRPASE
                     NNLTISFLNKPLGMILGAEHYWLRHMNLPIGVSAICVARRTE"
BASE COUNT          312 a          298 c          343 g          284 t
ORIGIN      
        1 cgtggcggcg attcactacg acaagagcaa atatgaagtg ttcaacctgg gcgaatcacg
       61 gacagttgaa ttgcgcgagt tgattggcct tttggaaaaa gaactcgacg gccatgctgt
      121 aattgatcgt caaccctccc agccgggtga tgtcccgcaa acatttgccg atatcgagaa
      181 ggcccggcgc ctccttggct ataacccgca gacccagatc gaagagggaa tccatcgatt
      241 tgttgagtgg ttccgaacaa cctagaatga aggtctgagc ccccaaataa ccgtagatca
      301 gacaaagaca gtaaaaagat attggaaagt attggtggaa cgattaaggt ttccttggta
      361 ttgaggttta cgacaagaca gacgcatatc ggacatttcg aaaatggcat caaccgcaaa
      421 cgtcgctgac ccaagtctgc cgcagcaaat gcagcagcat acctactcgt taatgtacga
      481 ggtcgagggt catcactggt ggtttgccgg acgccgccag atcatcacca gcttcatcga
      541 acatattttc acaggttggc agggtaaacg accgcgcata ctcgacgttg gctgcggtac
      601 tggcgccaac ctcgaaatgc tgggtgagtt tggcgacgca gaaggcgtgg acgtttctac
      661 cgatgcgctt tcgttttgtc gacaacgtgg gctcgatagc gttcgcctgg gtgaagctga
      721 gaagttgccg tatccggatc aatcgtttga tctggtgacg gcgctggatg tggttgagca
      781 cctcgacgat gatctcgctg ggctgaaaga aatgcgacgt gtgttgaagc ccggtggacg
      841 agcgatgatg tttgttccgg cgttcatgtt tttgtggggc gttcaggacg acgttagtca
      901 tcatcgccgt cgctatacga tgaagcagtt aaaagaaagg gtccgcgccg ccgggttcga
      961 gattgaacgc gcgacatttg ccaacatcac ttttttcctg cctaccctgg tgggacgcgt
     1021 gctcatgcga gtaaccggct tgcgaccggc atccgaaaat aatcttacga tcagcttcct
     1081 gaacaaaccg ttgggaatga tcctgggcgc tgagcattat tggttgaggc acatgaacct
     1141 gcccatagga gtttcggcaa tttgcgttgc tcgaaggact gagtagatcc ccctgcacaa
     1201 atgaaaatct acgacgaaca agaaaccgca atacgaa
//
LOCUS       DATCGC010001221         1650 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_415020, whole genome shotgun sequence.
ACCESSION   DATCGC010001221 DATCGC010000000
VERSION     DATCGC010001221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1650)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1650)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1650
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_415020"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            142..>1650
                     /locus_tag="VIJ87_11835"
     CDS             142..>1650
                     /locus_tag="VIJ87_11835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445128.1"
                     /translation="MRSYSFLALIVVLSTTTLAQQSIPELRKTALKSTNPSDEIVHLD
                     INKDGKPDILERWWNGKRVRWLDENGDMLPTDTRGDQVGDVLQIDKNGDGVYDGPNDI
                     NIKWADNDGDGQADLEAFVTQSPEWGPDKWNAAESHWMVYIDVEKDGVLGWLDWTKFD
                     FGNDNWGYTGTNDWLPDYNGNSIFLKVHRPPQSLPDPRLNWENPFAFFDFDNDGLSEM
                     AMRWLDPVPPLDKDQTKLTGVLNEAFVTFDLDNDSTKGNETDYDMSLRGAGGPGVPYQ
                     TFVHKYPALKGNPKFDGCFQWNNWRRIDELKYMPHEKSYDAFFTAGWKTLYFVFDEDD
                     DDHRWERVEMYYPMHGFGGPKDIDIYSTKRWRRSNYAEQDMVAENEKPGLSGHPQADS
                     LGDRGEFDDDNSGGGKLYVGVFDRKLHLAGAEWGAWTVDKNAEYHGGVKTPSPKPSAP
                     RVEEVVKYTDTDNNGFLDTVEYDYDGDRKVDFKLSLLDYKSSAQPHPDVVTLI"
BASE COUNT          436 a          417 c          433 g          364 t
ORIGIN      
        1 caaatgtccg ataagcttca gcttgtcgca gtgatgctga aggtggactt aagattcaag
       61 aagatctgtt actgatcacg acgacaagct aagcttatcg gacacttcca gcatattgga
      121 cactcagcgt cgaggtaaca aatgcgtagc tactcatttc tcgctctcat tgttgtccta
      181 tcaacaacca cactcgctca acaaagcatt cctgagcttc gcaagactgc actcaaatcg
      241 actaacccct ccgacgagat cgtccacctc gatataaaca aagacggcaa gccagacatc
      301 ctcgaacgat ggtggaacgg caaacgtgtg cgctggctgg atgagaacgg cgacatgctc
      361 cccacggata cgcgcggtga tcaagttggt gacgtcttac agatcgacaa gaacggcgac
      421 ggggtttacg acggcccaaa cgacataaac atcaagtggg ccgacaacga tggagacgga
      481 caagccgacc tcgaagcttt tgtaacccag tctcctgaat gggggccgga caagtggaat
      541 gctgctgagt ctcactggat ggtctacatc gatgtcgaaa aagacggcgt gttaggttgg
      601 cttgattgga cgaagtttga ttttggtaac gacaactggg ggtacaccgg aacaaatgat
      661 tggcttcctg actacaacgg caactcgatc tttctgaagg ttcaccgtcc cccacaatcg
      721 ctgccggatc cgcgtttgaa ctgggagaac ccgttcgcat ttttcgactt cgacaacgac
      781 gggcttagtg agatggcgat gcgctggctt gatcccgttc cgccgctcga caaggatcaa
      841 accaaactca ccggtgtttt gaacgaagct tttgtcacgt tcgatctcga caacgactcg
      901 accaaaggaa acgaaactga ctacgacatg tctctgcgcg gagcgggtgg acccggggtt
      961 ccatatcaaa cctttgttca caagtatccc gctctcaaag gcaatcctaa gtttgacggt
     1021 tgtttccagt ggaacaattg gcgccggatt gacgagctaa agtacatgcc gcacgagaag
     1081 agttacgacg cgtttttcac tgctggatgg aagacgctct attttgtttt tgatgaagat
     1141 gacgacgatc atcgttggga acgagtcgag atgtactatc caatgcacgg cttcggcgga
     1201 ccgaaagaca tcgacatcta ttcgaccaag cgctggcgac gcagcaacta tgcggagcaa
     1261 gacatggttg ctgaaaacga gaagcccggg ttgtctggtc atccacaagc ggattcactc
     1321 ggcgaccggg gagagtttga cgacgacaac tctggcgggg gaaagcttta tgtcggagtc
     1381 tttgatcgga aactgcatct cgccggcgcc gagtggggcg catggaccgt ggacaaaaat
     1441 gctgagtatc acggtggtgt aaaaactccg tcacctaaac caagcgctcc ccgcgtcgaa
     1501 gaggtagtga aatatactga caccgataac aatggattcc tcgacacagt tgagtacgac
     1561 tacgatggcg atcgaaaagt cgacttcaag ctttcacttc tggattacaa gagttcggct
     1621 caaccgcatc ccgatgtagt cacgttgatt
//
LOCUS       DATCGC010001222         1091 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_184501, whole genome shotgun sequence.
ACCESSION   DATCGC010001222 DATCGC010000000
VERSION     DATCGC010001222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1091)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1091)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1091
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184501"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..529
                     /locus_tag="VIJ87_11840"
     CDS             <1..529
                     /locus_tag="VIJ87_11840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445129.1"
                     /translation="TNYVFSPQSLAFANLTADQTADFAASIAPGVPILISEETSTRAL
                     ALDSILWAHEPFKLNSLFSSGSDSRTRVMLFAMNFDLLPGDTASAVTATAEDAAHRFY
                     PLTVEAVGTVPGLNWLRFVAVRLHDDMEDVGDVLVRIRIHNISSNRVRVGIGHIGGGP
                     ADDSGAVPTPGRPPG"
     gene            complement(552..>1091)
                     /locus_tag="VIJ87_11845"
     CDS             complement(552..>1091)
                     /locus_tag="VIJ87_11845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445130.1"
                     /translation="PGSLRIDFTPTSAGNGILFTDGKIFVFKDGKVETTRPYNHPLLI
                     LGFDIYRAPASEVTTKLQALKFDLSQFREDTWQGRPVYVVGAKAGDLHSPQFWIDQKN
                     LYFVRMLRPSGKDGTQTQETQFNRYQKLGGGWMAPEVIFMVDGKVVTTEKYSEIRGDV
                     TLDPKLFDPQSWTTVHWKE"
BASE COUNT          237 a          297 c          280 g          277 t
ORIGIN      
        1 gaccaattat gttttcagtc cgcaaagttt agcgtttgcg aatctcactg cagatcaaac
       61 ggccgacttc gcggcgtcaa tagcgccagg tgtgccgatc ctgataagtg aagaaacctc
      121 gacgcgagcc cttgctctcg attccattct ctgggcgcac gagcccttca aacttaattc
      181 acttttctct tcaggatctg attcgcgaac acgcgtcatg ctcttcgcaa tgaattttga
      241 cctcttacct ggtgacactg cctctgccgt tacggctact gctgaagacg ctgctcatcg
      301 tttctacccg ttgaccgtcg aggctgttgg aaccgttccc gggttgaact ggctgcgttt
      361 tgttgcggtc cgcttacatg atgacatgga ggacgttggt gacgtactcg ttcggatcag
      421 aatccacaat atttccagca accgagtaag agtggggatt ggccacatag gcggcggtcc
      481 agcggacgat tcgggcgcag tgccaactcc agggcgtcca cctggataag agactgcagc
      541 cgattagtgg ctcactcctt ccaatgcacg gtggtccagg attgtggatc gaatagtttt
      601 ggatccaacg tcacatcgcc gcgaatctcg gagtactttt cggtggtcac aaccttgcca
      661 tcgaccatga agatgacttc cggcgccatc caaccaccac caagtttctg atacctgttg
      721 aattgagtct cttgcgtttg cgtcccatcc ttgcctgagg gacgaagcat tctgacaaag
      781 tagaggttct tctgatcaat ccagaattgc ggagaatgca gatcgccagc tttggcgccg
      841 actacataca ctggtcgtcc ctgccacgtg tcttccctga actgggatag atcaaacttc
      901 agtgcctgca gtttcgtggt cacctcgctg gcaggcgcac gatagatgtc gaatcccaag
      961 atcagcagtg gatgattgta agggcgcgtc gtctcgacct tgccgtcttt gaatacaaag
     1021 atcttgccat cggtaaacag gatgccattg ccggcgcttg tcggtgtgaa gtcaatgcgc
     1081 aaactaccag g
//
LOCUS       DATCGC010001223         2187 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_283943, whole genome shotgun sequence.
ACCESSION   DATCGC010001223 DATCGC010000000
VERSION     DATCGC010001223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2187
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283943"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..264)
                     /locus_tag="VIJ87_11850"
     CDS             complement(<1..264)
                     /locus_tag="VIJ87_11850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445131.1"
                     /translation="MKPRTSSESLSPKTIHLGLLALCVISSAISVHAAKTGKVVIREN
                     VTASKRNELANRLRSISGLANLGFDSDGVLVLGEGSNGGSQGAR"
     gene            576..764
                     /locus_tag="VIJ87_11855"
     CDS             576..764
                     /locus_tag="VIJ87_11855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445132.1"
                     /translation="MIKRRQKRKGTFRVTCIWCGTKIREDKEEETTGVCLKCFYARLA
                     NHIGLQKRAAYGEFVSDR"
     gene            complement(767..1261)
                     /locus_tag="VIJ87_11860"
     CDS             complement(767..1261)
                     /locus_tag="VIJ87_11860"
                     /inference="COORDINATES: protein motif:HMM:NF012521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEY5445133.1"
                     /translation="MRTLYLLRHAKSSLQDETIRDFDRPLTKRGREAAEVVGQAVAAE
                     RLNNALVLSSPAIRARETTEIMLQSSKLAAELRFDPQIYEADLSALLKILGQIDDQRD
                     VVILIGHNPGMETLVRFLTGETRAMPTAGLGKIVFEGNSWRALTGGEGRLEWLITPND
                     SFDA"
     gene            1317..2006
                     /locus_tag="VIJ87_11865"
     CDS             1317..2006
                     /locus_tag="VIJ87_11865"
                     /inference="COORDINATES: protein motif:HMM:NF014299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445134.1"
                     /translation="MSAPMISYGKHKFPGKLFVVEGTDGSGKSTQLALLHQWLKAEGY
                     PVFFSEWNSSPLVKDTTRRAKKRHLFTPATFSLLHATDFADRTERDIIPPLKAGAIVL
                     ADRYIYTAFARDVARGCSRDWVRDVYSFAVKPTAAFFFRAPLDVAIDRIVSGRPILKH
                     YEAGLDLGLSDDPEESFTLFQGKILEEYDRMVSEFGLTVIDASRSIERQQREMRMLIS
                     QHLKRRRSKAH"
BASE COUNT          558 a          562 c          543 g          524 t
ORIGIN      
        1 tcgtgcgcct tgcgagccgc cgttgctacc ttctccaaga accaaaaccc catcgctatc
       61 aaaccccagg ttcgccaagc cacttattga tcgaagtcta tttgccaact cgttacgctt
      121 gctagcagta acattttcgc gaatgacgac tttccctgtt ttcgccgcat ggaccgaaat
      181 cgctgagcta atcacgcaaa gcgctagcaa gccaagatgg atggtctttg gagaaaggga
      241 ttcacttgag gttctgggtt tcactctgca attcctcccc agaggttcga ccggcgtagt
      301 cgttttgggc gtgcgtcggt ttaggctaag caaggcgaca atggcttgtc gcgttggcga
      361 ccgatgttac caaaatgtta acagaacgcc catcgaaaag ttttattttg aggctgaagg
      421 aaaagatcaa ctggccatcg cctgaactac gcctagcatt ccgctctcaa gtgcgcatcg
      481 gagtcgtaac cgccaattaa cttgagagcc acatgaacgt aactcttgct gtttaccttg
      541 gtatcaaaat caatgagtct gacaaggagg gatgaatgat taagaggaga cagaaaagaa
      601 aagggacgtt ccgtgtcact tgcatctggt gcggaacaaa gattcgtgag gacaaagaag
      661 aagaaacgac cggtgtatgt ctaaagtgct tttacgcgcg actcgccaat cacattggct
      721 tacagaaacg agcagcttac ggagagtttg tgagtgaccg ctaagcttag gcatcgaaag
      781 agtcgttcgg tgtaatgagc cactctagcc gaccttcacc accggttaga gcccgccatg
      841 agttgccctc aaaaacaatc ttccctaacc ctgcagtcgg cattgctcga gtctcaccag
      901 tgaggaacct aaccagagtc tccattccgg gattgtggcc aattaggatg accacgtccc
      961 tctggtcatc aatctggccc aatatcttca acaacgcaga caaatcagcc tcatagattt
     1021 gcggatcaaa acggagctca gctgccaatt tactactttg gagcattatc tcagtagtct
     1081 cgcgagccct gatcgccggt gaactcaaca ccaaagcgtt attcagtctt tcagccgcta
     1141 ctgcctggcc caccacctcg gccgcttctc tgcctcgttt cgtgagtgga cgatcaaagt
     1201 cgcggatggt ttcatcctgc aaacttgatt tggcatgcct taagaggtac aaagttctca
     1261 ttggttagaa agcattccca agagcgacgt tacattgatg taacaggaat aacctagtgt
     1321 ctgcgccgat gatttcctac ggcaaacaca aattcccggg caaactcttt gtcgttgaag
     1381 gcactgacgg cagcggcaaa tccacgcagc tcgcactgct gcatcaatgg ctcaaagctg
     1441 agggttatcc agttttcttt tcagagtgga attcgtcacc cctcgtaaag gatacgacga
     1501 gacgggcgaa gaagcgtcac ttattcaccc cggctacatt ctcgcttctt cacgcaacag
     1561 acttcgctga ccgaactgaa cgcgacatca ttcctccatt aaaagctgga gcaatagtgc
     1621 tcgccgatcg ttacatctac acggcgtttg cgcgagacgt ggccagggga tgtagccgcg
     1681 attgggtgcg cgacgtctat tcgtttgcag taaaacccac cgcagcgttc ttctttagag
     1741 cgccactcga tgttgccatc gatcgaatag tatcgggccg gccaattctt aagcattacg
     1801 aggctggatt ggatcttggt ttgtctgatg atcctgaaga gagtttcacc ttgttccaag
     1861 gcaagatcct tgaggaatac gatcgcatgg tttcagaatt tggactaacg gttattgatg
     1921 ccagtcgatc aattgaacga caacagcgtg agatgcgaat gctgattagt caacacctca
     1981 agagaaggcg gtccaaggca cattaacaac aagcactttt acggcacacc ccttcccgga
     2041 gttgaacagg aagaatacag cggcaagctg atcgtgatcg aaggcacgga cggcgtgggc
     2101 cggtcgactc atatcgcgtt gttaagaacg tggctcgagt ctcgagggca tgcggtcttg
     2161 gatacgggta tgacgaggtc cgtgctc
//
LOCUS       DATCGC010001224         1034 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_383394, whole genome shotgun sequence.
ACCESSION   DATCGC010001224 DATCGC010000000
VERSION     DATCGC010001224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1034)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1034)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1034
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_383394"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..376)
                     /locus_tag="VIJ87_11870"
     CDS             complement(<1..376)
                     /locus_tag="VIJ87_11870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase domain-containing protein"
                     /protein_id="HEY5445135.1"
                     /translation="MADDRNSVDRGRAIEAALANIEKKFGKGSIMRLGEREVSDIPAI
                     STTSLSLDAAVGVGGVPRGRIIEIYGPESSGKTTLALHIVAEAQKAGGVAAYIDAEHA
                     MDAEYAGKLGVDIAQLLISQPDS"
     gene            complement(602..940)
                     /locus_tag="VIJ87_11875"
     CDS             complement(602..940)
                     /locus_tag="VIJ87_11875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445136.1"
                     /translation="MDNHNTMLKKGTPVLVVLHSPREKCWGMLDEIASAGVFLRGLDL
                     KAFDDWISAVVHREPFLGLGSMFFPMWRVERIAKDETSGEVPSLCQQAEQRTGLSFDD
                     LMKDDDGSLV"
BASE COUNT          244 a          298 c          232 g          260 t
ORIGIN      
        1 ccgagtcagg ctgtgatatc agcagctgag ctatatcaac tccgagttta ccggcatact
       61 cggcgtccat tgcatgttcg gcatcaatgt aagccgcaac tcctccggcc ttttgtgcct
      121 cagcgacaat gtgaagagcc agcgtggttt tgccagaact ctccggaccg taaatctcaa
      181 tgatccggcc tcgtggcact ccaccaacgc caaccgcggc gtccaaactc agcgaagtgg
      241 tcgagattgc cggaatgtcc gacacttcac gctcgcccaa ccgcatgatg gaacctttac
      301 caaatttctt ttcaatgttt gctagagcag cctcgattgc tcggccgcga tctacgctgt
      361 ttcggtcatc tgccatggca taattcactt tcttctgctc cttttctcac aatcgcgtca
      421 ggttctgcct cgaagagccg acagcataac ataagcgaaa cgggaatgga acagtgtttc
      481 acgcttgcaa caacattaga gggtgaggtt tttggagtcc tgctttcaac gcgcaattgg
      541 cagccctctc tgcgctgtcg agtcatggtg aggctgcgcg cgaaagcctt cgttagatat
      601 ttcaaaccaa cgaaccgtcg tcatctttca tcaagtcgtc aaaactgaga ccggtccgtt
      661 gctcggcctg ctgacatagc gacggaactt ctccagacgt ttcatctttt gcgatccgct
      721 caactcgcca catcggaaag aacattgaac ctaaacctaa gaaaggctcc cgatgaacga
      781 cagcgctaat ccaatcgtcg aatgctttca agtcaagacc gcgcaagaat actccagcgc
      841 ttgcgatttc gtcgagcatg ccccaacact tctctcgcgg gctatgcaac acgacgagga
      901 ccggtgttcc tttcttaagc atggtgttgt gattatccac ggtgtctatg ctcgagaact
      961 ttttgccggc aacaaattac ctgagaactc accaatccgt tttgctatat ccttttcacc
     1021 agtgacacgt tcaa
//
LOCUS       DATCGC010001225         1135 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_216356, whole genome shotgun sequence.
ACCESSION   DATCGC010001225 DATCGC010000000
VERSION     DATCGC010001225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1135)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1135)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1135
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216356"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            214..>1135
                     /locus_tag="VIJ87_11880"
     CDS             214..>1135
                     /locus_tag="VIJ87_11880"
                     /inference="COORDINATES: protein motif:HMM:NF019845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HEY5445137.1"
                     /translation="MSVSTLTTQPDLPSTPGSMMRASVLCDIGRLEVRDVPRPMIAPH
                     EVLVRVAAVGICGTDAHIFAGHANYNLNDHGLPIPLALQPQILGHEICGTIEEVGRGV
                     DDVKTGDRVVIDQGLNCVSRRREVRCDYCRTGDSHQCEFYREHGITGLPGGLAEFIAV
                     PAVNTIKISTSLPSSSAALVEPLGCVIHSSYCVARARTRYSFNADKSDQRVRSVLICG
                     AGPAGLLFTQYLRNVIGYRGLLFVSDPNERKRQLAATLGADQTIDPTSCDLVDVVREH
                     SNGKGVEYLIEASGAGEVFASIPGLISKQAA"
BASE COUNT          275 a          275 c          335 g          250 t
ORIGIN      
        1 catagacgag acaatgacga gattcgggtt gctgcgcgac cagggaagat tggatacgag
       61 cgacctggag gcgtgaagaa acagtaggca ggagcagtag gcaggagcag tcgcgacgat
      121 caagagggtt gcagcacaaa gttcaaaatc caaagcacaa agcacaaagc actaagtaca
      181 aagaccgaag aacaaagtca aaagcacaaa cccgtgagtg tctcaacatt aacaactcaa
      241 cccgacttgc catcaacacc gggttcgatg atgcgggcga gtgtgctctg tgacatcggt
      301 cgtttggaag tgcgagatgt gccgcgcccg atgattgcgc ctcatgaagt gctggtgcga
      361 gttgcggcgg tcggaatttg tggtaccgac gcgcacatct tcgcaggtca tgcaaactac
      421 aatctcaacg atcacggtct ccccattcca ctcgcgttgc agcctcaaat tcttggtcac
      481 gaaatctgcg gaaccattga agaggtcggt cgcggagttg acgatgtgaa gaccggcgat
      541 cgagttgtta tcgaccaggg acttaactgc gttagcaggc gacgcgaggt gcgctgtgac
      601 tattgtcgca ctggcgattc gcatcagtgt gagttctatc gtgaacacgg gatcaccgga
      661 ttgccgggtg gtttggccga gttcatcgct gttcctgcgg tcaacacgat caagatttct
      721 acgtcgctgc cgtcgtcgtc ggcagcgctc gttgagccac tgggttgcgt catccattcg
      781 tcttactgtg ttgcgagagc acggactcgg tattctttta acgctgacaa gtccgaccag
      841 cgagtccgca gcgtgttaat atgcggcgcc gggcctgctg gtttgttgtt tacgcagtat
      901 ctaagaaacg tgattggtta tcgcgggttg ttgtttgtaa gcgatccaaa tgagcgcaaa
      961 cgacaactgg cggcgacatt gggcgccgat caaacgatcg atccaacgag ttgtgatctc
     1021 gtcgatgttg ttcgcgagca cagcaatgga aagggcgtcg agtatttgat cgaagcctca
     1081 ggagcgggcg aggtgtttgc atcaataccc ggtttgatca gcaaacaagc agccg
//
LOCUS       DATCGC010001226         1423 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_21300, whole genome shotgun sequence.
ACCESSION   DATCGC010001226 DATCGC010000000
VERSION     DATCGC010001226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1423)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1423)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1423
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21300"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..229
                     /locus_tag="VIJ87_11885"
     CDS             <1..229
                     /locus_tag="VIJ87_11885"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF013590.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M13-type metalloendopeptidase"
                     /protein_id="HEY5445138.1"
                     /translation="DGFTPEQRFFLGYARGWATNTRPELARMLTNVDPHPLAKFRVNG
                     PLSNMPQFAEAFSCKAGDTMVRAEKDRCQIW"
     gene            351..1301
                     /locus_tag="VIJ87_11890"
     CDS             351..1301
                     /locus_tag="VIJ87_11890"
                     /inference="COORDINATES: protein motif:HMM:NF022588.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2911 domain-containing protein"
                     /protein_id="HEY5445139.1"
                     /translation="MISLKRSFLFLFATMFALTCVSAAMSQVVTPRPSQKASVMQTIG
                     VTDVTITYSRPGVKGRKIWGDPTPDQAKTQGEATLDNQNVRPKDAVIVPYGHVWRAGA
                     NEATMFVVTDDVLINGQKLAAGSYSLHTVPTKDEWTIIFNGTANQWGSFSYDPAKDTL
                     RVKAKPEWVADNQEWLAYSFDPVTDNSAQVNIRWEKIRVPFTVSIADVNATTLAHLRT
                     QVGAAKADDWRTPMQAGNWVMQNSITSDDAEGMAWLDQSIKIKETFQNLMVKTNALYK
                     VGKKQEAFTLGEQAVQRGKTDKVDTAAFEKRLADMKAGKI"
BASE COUNT          369 a          340 c          396 g          318 t
ORIGIN      
        1 cgacgggttc actcctgagc agcgcttctt cctcggctat gcgcgcggtt gggcaaccaa
       61 cactcgtcct gaactagcgc gcatgttaac caacgtcgat ccgcatccgt tggcaaaatt
      121 ccgcgtcaat ggcccgttgt caaacatgcc gcagtttgct gaagcgtttt catgcaaggc
      181 tggtgacaca atggttcgag cggaaaaaga tcgttgtcag atttggtaaa taaacaattg
      241 gtcttgggtt tttggtctta ggtcttggcg cgttccaagg ccaaagacca aaggccaaag
      301 accaaaaacg aaacccgata cacacgactt actgaaggag atgtatttct atgatttccc
      361 tgaaacgtag ttttcttttc ttgtttgcga ccatgtttgc gctgacctgc gtcagcgcag
      421 cgatgtcgca ggttgtaact ccgaggccga gtcagaaggc gagcgtaatg caaacaatcg
      481 gagttaccga tgtgaccatt acctatagtc ggcccggcgt gaaaggtcgg aagatttggg
      541 gcgacccgac tcctgatcaa gccaagacac agggcgaggc gacactcgac aaccagaatg
      601 ttcggccaaa agatgctgtg atcgtccctt atggacacgt gtggcgtgct ggcgccaatg
      661 aagcgacgat gtttgtcgtg accgacgacg ttttgatcaa tggtcagaaa ctcgcggccg
      721 gcagttacag cttgcacaca gtgccgacaa aagatgagtg gacaattatt tttaacggta
      781 cagcgaatca gtggggaagt ttcagctacg atccggcgaa ggacactctt cgggtcaaag
      841 cgaaacctga atgggtggcc gacaaccagg aatggctcgc gtactccttc gatcctgtta
      901 ctgataactc ggcccaggta aatatccgct gggaaaagat tcgcgttcca ttcaccgttt
      961 cgatcgccga tgttaatgcg acgacactgg cgcacttgcg cacgcaagtc ggtgctgcaa
     1021 aggctgatga ctggcgcaca ccgatgcagg ctggcaattg ggtgatgcag aacagcatta
     1081 cgagcgacga tgcagaaggc atggcctggc tggatcagtc gatcaagatt aaagaaacat
     1141 ttcagaacct gatggtaaag acgaatgcgc tttacaaggt tggcaaaaag caagaggcct
     1201 ttacgctggg agaacaagcc gttcaacgtg ggaagactga taaggtcgac actgcggcgt
     1261 ttgagaagcg actggcagat atgaaggctg ggaagatcta attctgcatt agctgagttg
     1321 gttcttgggg gagtggagaa atcaactccc ctttttcttt tgcgctgcag tcgaatacca
     1381 cccacgggag tgggcagagt acgaccttac aagtcaaacg cac
//
LOCUS       DATCGC010001227         1285 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_150093, whole genome shotgun sequence.
ACCESSION   DATCGC010001227 DATCGC010000000
VERSION     DATCGC010001227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1285)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1285)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1285
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150093"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            126..653
                     /locus_tag="VIJ87_11895"
     CDS             126..653
                     /locus_tag="VIJ87_11895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445140.1"
                     /translation="MSGAGNRSRHRWTWGLRLLSNQIPRASVRTTLTYSFHPRLSAGI
                     EYNPRAHEVAPLVNLLVLTETASRPALMIGTSTDRIGTPSGQSFYVTVSKNLRERTGL
                     PIAPYAGAAYGTYDDRIRPIGGLSIFLGKGFSLLATYNGVQVHPLLIYSRGPHALSLV
                     MVKGRDPGMSYSVTF"
     gene            677..>1285
                     /locus_tag="VIJ87_11900"
     CDS             677..>1285
                     /locus_tag="VIJ87_11900"
                     /inference="COORDINATES: protein motif:HMM:NF016269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-binding SYLF domain-containing protein"
                     /protein_id="HEY5445141.1"
                     /translation="MKLFSILAVLVILVSSISTPLAQKKSRTPDAARHAGDASKAFTE
                     IMNVKDKAIPKELLDNAEAIAVFPDVVKAAFIVGGRGGQGVISKRVKGGWGPPAFFNL
                     SGGSFGPQIGAQKTDYVLLVMNPSGVEGLLSDKFEIGGEASVAAGPVGREASASTNPR
                     LDAGILSYSRSKGVFVGAALKGAVISPDNDLNEAVYGLKAKDI"
BASE COUNT          291 a          315 c          370 g          309 t
ORIGIN      
        1 aacaaatcga ctcgatgttg aagagtgatg ctgctgcttt agaacgtgaa actacgagta
       61 acaacagcga gcccgatgtt tctctggtgc ccagctgacc gctttgacca ggtgaaggcc
      121 gcgccgtgag cggggcaggg aatcgaagca ggcatcgctg gacttgggga ctgaggttac
      181 tttcaaatca gatccctcgt gcatctgtcc gcaccacgct tacgtatagt ttccatccgc
      241 ggctgagtgc aggcattgaa tacaatccgc gggcgcatga agtcgcgccg ctcgttaatt
      301 tgcttgttct tactgaaacg gcttcgcgac cggcattaat gatcggcacc agcaccgatc
      361 ggatcggcac gccgtcaggc cagtcgtttt atgtgacggt tagcaagaat ctccgtgagc
      421 gtacaggact tcctatcgct ccttacgctg gcgctgccta cggcacgtac gatgatcgaa
      481 tccgcccgat cgggggactc agtatctttc tcggcaaagg gttttcattg cttgcaacct
      541 acaacggtgt acaggtacat ccattgctta tctattcaag aggtcctcat gctctgtcgc
      601 tcgtgatggt aaaaggacgt gatcctggta tgagctacag tgtgaccttt tagtgaggac
      661 gcatgggagg atttcgatga aattattcag tattttggca gttttagtca ttttggtctc
      721 ctcgatttcg accccgctgg cgcagaagaa atcgcggact ccagacgcgg ctcgccacgc
      781 cggcgatgct tcgaaggcgt tcaccgaaat catgaacgtc aaagacaaag cgattccgaa
      841 agaactgctc gacaacgcgg aagcgatcgc ggtctttccc gacgtcgtga aagccgcatt
      901 catcgttggt ggtcgtgggg gtcagggtgt gatcagcaaa cgtgtgaaag gtggctgggg
      961 accgccagcg ttcttcaatc tcagtggcgg cagttttggt ccgcagatcg gtgcgcagaa
     1021 gaccgactac gtgttgctcg tcatgaaccc aagtggcgtg gaaggtttgt tgagtgacaa
     1081 gtttgagatt ggtggtgaag ccagcgtggc tgctggtcca gttggaagag aagcatcagc
     1141 atcaactaac ccacgtttgg atgcaggcat actttcatac tcgagaagca aaggtgtgtt
     1201 tgtcggcgcg gccctcaaag gtgccgtgat ctcacctgac aatgatctga acgaagcggt
     1261 ttatggattg aaggccaagg acatt
//
LOCUS       DATCGC010001228         1599 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_116411, whole genome shotgun sequence.
ACCESSION   DATCGC010001228 DATCGC010000000
VERSION     DATCGC010001228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1599)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1599)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1599
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116411"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..605)
                     /locus_tag="VIJ87_11905"
     CDS             complement(<1..605)
                     /locus_tag="VIJ87_11905"
                     /inference="COORDINATES: protein motif:HMM:NF014796.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006801 - superoxide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-Mn family superoxide dismutase"
                     /protein_id="HEY5445142.1"
                     /translation="METSEPYQPKQFDLNRLHGISDQTLEMHFKLYEGYVKETNRLTE
                     KIWEFLKDGHVDQEEMPAYSELTRRLGFEYNGMVLHEYYFGNMTKSGSTDPGKQSQFY
                     RAAQGGFGSYDIWKADFVSIGKMRGVGWAICFQDPKRGRLTNHWVTLHEMGNVAGFNP
                     VLVMDVWEHAFLLDYKPAERPKYIEAFFANVDWNVVEGRLKA"
     gene            complement(747..1412)
                     /locus_tag="VIJ87_11910"
     CDS             complement(747..1412)
                     /locus_tag="VIJ87_11910"
                     /inference="COORDINATES: protein motif:HMM:NF012436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HEY5445143.1"
                     /translation="MGAIIVRDEPVSEEMIDTTLADSFPASDPPCWTLGRERYQEKEP
                     ARSTNETKQIIAEEKLIMKTDIGLSDEQRDNVVKILNALLSDEYVLYTKTRNYHWNVI
                     GPQFNDLHKFFEEQYTELNVVVDDVAERARSLGGWALGTLKEFSQHARVNEYPGQYPQ
                     AREMITNLLGDHETIVRQLRTDLETAEKHHDMGTNDFLTGLMEKHEKMAWMLRAFLQA
                     ESV"
     gene            complement(1367..>1599)
                     /locus_tag="VIJ87_11915"
     CDS             complement(1367..>1599)
                     /locus_tag="VIJ87_11915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445144.1"
                     /translation="IERHTIASLRFGAESERSLFVADYDTVSFMRKTLRAASNALRLG
                     EINLRNSKLSVIAQGEKTWEQLSYETSRFLKR"
BASE COUNT          348 a          435 c          365 g          451 t
ORIGIN      
        1 gccttcagac gtccttcgac tacattccag tcaacgttgg cgaaaaaagc ttcaatgtat
       61 tttggacgtt cagcgggttt atagtcgagc aggaatgcat gctcccatac atccatgacg
      121 agcaccgggt tgaatcccgc aacgttgccc atttcgtgta gcgttaccca gtgattggtg
      181 agtcgcccgc gttttggatc ctgaaagcat atcgcccagc ccacgccgcg cattttaccg
      241 atacttacaa agtcggcttt ccagatatca tagctaccga agcccccctg ggctgcgcga
      301 tagaactgag actgcttgcc cggatcagtc gatccacttt tagtcatgtt tccaaaataa
      361 tattcatgca gtaccatccc gttgtattca aaaccaagac ggcgggtgag ttccgaatat
      421 gccggcatct cctcctgatc gacatgccca tctttcagaa actcccagat tttttccgtt
      481 agacggttgg tttccttgac atagccctca tagagcttga aatgcatttc cagtgtttga
      541 tcggagatgc catgaagtct gttgagatca aactgcttcg gttgatatgg ctcacttgtt
      601 tccatcccat tcgtcctcca gactccgtcg acgagtatcc ccatcactaa ttccccgctg
      661 gcagaaaggg ttgtctcagc tagaaagttt ccggctcctg atgattttta acctgttcct
      721 ttccaatggt gacgcgttct ctctcattaa accgactcgg cttgcagaaa ggcgcgtaac
      781 atccacgcca tcttttcgtg tttttccatc aaacctgtca gaaaatcgtt tgttcccatg
      841 tcgtggtgct tctcagcggt ctccaaatcg gtgcgcagct gtcgcacaat cgtttcgtga
      901 tcgcctaaaa ggttcgtaat catctctcgg gcctgcggat attgaccggg atattcgttg
      961 actctggcgt gctgggaaaa ttcctttaat gttcccaacg cccagccgcc gagggaccgc
     1021 gcgcgttcgg caacatcatc gacgactaca ttcagctcgg tgtattgctc ctcaaagaat
     1081 ttgtgcagat cgttgaactg cgggcctatc acgttccagt ggtagttcct ggttttggta
     1141 taaagaacat actcgtctga cagtagtgcg ttgaggatct tcacgacatt gtcgcgctgc
     1201 tcgtccgaga ggcctatatc ggttttcatg atcaatttct cctctgctat tatttgtttg
     1261 gtttcgtttg ttgatctagc aggctctttc tcctgataac gttcacgacc taatgtccag
     1321 caaggtggat cgctcgcagg aaaactgtcc gccagcgtcg tatcgatcat ctcttcagaa
     1381 accggctcgt ctcgtacgat aattgctccc atgttttttc tccttgcgcg atgaccgaca
     1441 gcttactatt tcgtaaattg atctcgccga gcctcagggc attcgatgcc gcgcgcaacg
     1501 tcttccgcat aaaagagact gtgtcgtaat ccgcgacaaa gagggaccgc tcggattcag
     1561 ctccgaagcg caaagacgca atcgtgtgcc gctcaatgg
//
LOCUS       DATCGC010001229         1229 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_415119, whole genome shotgun sequence.
ACCESSION   DATCGC010001229 DATCGC010000000
VERSION     DATCGC010001229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1229)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1229
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_415119"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            228..>1229
                     /locus_tag="VIJ87_11920"
     CDS             228..>1229
                     /locus_tag="VIJ87_11920"
                     /inference="COORDINATES: protein motif:HMM:TIGR00795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HEY5445145.1"
                     /translation="MPWSQVYDPLGHPWLSTLFAALPVVVLLGALAVFKIKAHTAALL
                     GLATSILIAILIFGMPTKMAFGSLFFGAAYGLFPIGWIILNVIFLYQLTKERGLFDTL
                     RHSITGLTQDSRLQLLLVAFCFGAFFEGASGFGTPVAVTGALLIGLGFSPLSASGLSL
                     IANTAPVAFGALGTPLIGLQSVTGLELKDLSAMVGRQLPFFSLLVPFWLIWAFAGFRG
                     MIEIWPAILVAGVCFAIPQFLVSNFHGPWLVDVIAAVTSMGALAVFLKFWTPKKIWRM
                     SEDEGQSSKHQVQSTKAVLQAWLPWIILSVVVFLWGLPQIKALLDGFSAPKIPVPWLD
                     "
BASE COUNT          234 a          333 c          312 g          350 t
ORIGIN      
        1 gttccgtagt ctggatgatt tcggatttgg gaattcggat ttcggctttc gtgttggttg
       61 aggctcgctg ccaggaatca gcgtgcgttt tcgagtgtga ccgaaaagtt tcagcgctcc
      121 ggagtcaaca caaaatccga aatccgattt cccaattccg aaattctctt tacctctcac
      181 cgtaaacatc agttctgttt ttgagaaatc ggtgtaatct gtcgcccatg ccctggtctc
      241 aagtctacga tcccctgggc cacccgtggc tctccacatt gtttgcagcg ttgccggtcg
      301 tagtccttct cggcgcgctc gctgtcttca aaatcaaagc ccacactgcg gccctacttg
      361 gtttggcgac atcgatcctg atcgcaattc tgatctttgg gatgccgact aagatggcgt
      421 ttggcagtct gttctttggc gccgcgtatg gtttgtttcc aattggctgg atcatcctca
      481 atgtgatctt cctctaccag ctcacaaaag aacgaggtct gttcgacact ttgcggcaca
      541 gcatcaccgg cctgacgcag gactcgcgtc ttcaactttt actcgttgcg ttttgcttcg
      601 gtgcattctt cgaaggggct tcaggtttcg gtactccggt agctgtcacg ggtgcgctgc
      661 taataggact gggcttttca ccgctctccg catccggtct ctcgctaatc gccaacacag
      721 cgccagtggc cttcggagca ctgggcaccc cactcatcgg actacaaagt gttacgggcc
      781 tcgagttgaa agatctcagc gccatggtcg gccgacaact gccgttcttt tcattgctgg
      841 ttcccttctg gttgatctgg gcgtttgccg gcttccgtgg gatgatcgag atctggccgg
      901 cgattcttgt tgctggagtg tgtttcgcga ttccacagtt tctcgtttca aactttcatg
      961 gaccgtggtt ggtagatgtg atcgctgctg ttacttcaat gggcgcgtta gcagtcttcc
     1021 tgaaattctg gacgcctaag aagatttgga gaatgtctga agacgaggga caaagctcaa
     1081 agcaccaagt ccaaagtacc aaagccgtcc tccaagcctg gctaccctgg atcatcctaa
     1141 gcgtggttgt ctttctttgg ggcctgccac aaatcaaagc actactcgac ggattctctg
     1201 ctccaaagat tccggttccg tggttagac
//
LOCUS       DATCGC010001230         1874 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_184608, whole genome shotgun sequence.
ACCESSION   DATCGC010001230 DATCGC010000000
VERSION     DATCGC010001230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1874)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1874)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1874
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184608"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1858)
                     /locus_tag="VIJ87_11925"
     CDS             complement(<1..1858)
                     /locus_tag="VIJ87_11925"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY5445146.1"
                     /translation="MVIIHAIEEAGGLDFIVMEYVEGQTLKRMIVQDGALPFIGLLDV
                     GIQIAEALEAAHTVNVIHRDIKSANVLITPRGIAKVLDFGLAKNIRGMTDKVDKEAAT
                     LLDLTGEGVVMGTASYMSPEQTRGELLDLRSDIFSLGTVLYEAATRSLPFPGQSVLAI
                     MDSISRVAQTPPSQIRPELPPEFDAILARALAKERERRYGSAAEMANDLRNLRTGITD
                     SWRGPSVVYDRDLIDTSATSFVGREAELGKLEGFLRQAIEGKGRVIFITGEPGIGKTS
                     LSDEFLRRARSQSKGLMVSRGRCIEQYGTGEAYLPFLDALGSLLDGPSRERLGAIMRS
                     YAPTWCTQLPAAFSSTGTVDHLQQDTIGATKDRMIREMGDALGLFSNTTPVVLLLEDL
                     HWADPSSIDLLRHLCNRISTQSVLLVGTFRPEDVERSNHPLKSYKAEMQMHKLCEEIA
                     LDSLTRDHIVDYLNVTFKPNDFPANLADHLHEKTEGHPLFTTNLLQFLSERGDIVKAN
                     EHWTLARPLSQVELEIPQSIRSMIGKKIDSLDEEDRRTLQYASVEGAEFLSTVVADLL
                     GIDQVDVEERLAGLEKTHRLVVTREEEDLPDGSLATRYRFAHALYQNFLYGNL"
BASE COUNT          439 a          511 c          474 g          450 t
ORIGIN      
        1 ccaggtttcc gtacagaaaa ttctggtaga gcgcgtgagc aaaacgataa cgcgttgcga
       61 gcgacccatc gggtaaatct tcctcctcgc gtgttacgac caggcgatgc gttttttcca
      121 ggccagccaa acgctcttcc acatccacct gatcgatgcc gagcagatcg gcaaccacgg
      181 tcgacaaaaa ctccgcccct tcaacgctcg cgtattgcaa agtcctccga tcctcttcgt
      241 cgaggctgtc aatcttcttt ccgatcatgc tgcgaatgct ttggggtatc tccaattcaa
      301 cctgcgaaag cggacgcgcc aacgtccaat gttcgttcgc tttgactatg tcacctcgct
      361 cactcagaaa ctgaagcagg ttggtcgtga ataagggatg tccttcagtt ttttcatgca
      421 ggtgatcagc gaggttggcg ggaaagtcgt tcggcttaaa cgtgacgttc aagtaatcaa
      481 cgatatgatc gcgagtcaat gaatcgagcg cgatctcttc gcagagctta tgcatctgca
      541 tttccgcttt gtaactcttc agtgggtgat tacttcgttc gacatcttcc ggacggaagg
      601 tgccaacgag taacacactt tgggtactga ttcgattaca aagatggcga agaaggtcga
      661 tactcgaagg gtctgcccag tggagatctt cgaggaggag cacgactggc gtcgtatttg
      721 aaaacaaccc caacgcgtcg cccatttccc gaatcatgcg gtccttggta gcgccaatcg
      781 tatcctgctg aaggtggtca acagtgccgg tagatgaaaa cgccgccggt aattgtgtgc
      841 accatgttgg tgcataactc cgcatgattg cacccaggcg ttcccggctt ggtccgtcga
      901 gcaacgatcc cagcgcatca agaaacggaa ggtaagcttc accggtgccg tattgctcaa
      961 tacatcgccc acgagaaacc atcaaccctt ttgactgaga acgtgcacgg cgaagaaact
     1021 cgtcggagag tgatgttttg ccgatccccg gttcgccagt gatgaagatc acccgaccct
     1081 ttccttcaat tgcctgtctc aggaatcctt cgagttttcc taactcagct tcacgaccta
     1141 caaacgaagt tgccgacgta tcgatgagat cgcgatcgta aacgacggaa gggccgcgcc
     1201 acgagtccgt tatgccggtc cgcaggttcc tcaaatcgtt agccatctca gctgcagacc
     1261 cgtagcgacg ctcacgctct tttgccaggg cccgagcaag gatggcatca aactccgggg
     1321 gcaattccgg acgaatctga ctcggtggcg tctgtgcaac tctggaaatc gaatccatga
     1381 tggcgagcac actctgtccg ggaaacggta aagacctggt tgccgcttca tacaacacag
     1441 ttccaagtga aaatatgtcg gatctcaaat cgagaagttc gccacgtgtc tgttctggcg
     1501 acatgtaaga cgcggttccc atcaccacac cttcaccggt gaggtcgaga agtgttgcgg
     1561 cttccttgtc caccttatca gtcatgcctc gaatgttttt cgccaaacca aagtcgagga
     1621 cctttgcgat tcctcttggc gtaatcaaaa cattcgctga tttgatatcc cggtgaatca
     1681 cgttaacggt gtgcgcagct tccaaagcct cggcaatctg gattccaaca tcgaggagcc
     1741 cgatgaaagg taacgcaccg tcttgaacta tcatccgctt gagcgtttgt ccttccacgt
     1801 attccatgac gatgaagtcg aggcctccgg cttcttcgat ggcgtggatg atgacgatgt
     1861 tggggtgatt gaga
//
LOCUS       DATCGC010001231         2116 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_250582, whole genome shotgun sequence.
ACCESSION   DATCGC010001231 DATCGC010000000
VERSION     DATCGC010001231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2116
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250582"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            318..1832
                     /locus_tag="VIJ87_11930"
     CDS             318..1832
                     /locus_tag="VIJ87_11930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445147.1"
                     /translation="MLKSSRLSVVFASLVVLILLVQITALAGNTQSQEPSAGSKTSQK
                     VKSSKKRKKKKVASVPYLVLGSATQTVPVELKSVTVTPVTESAPEPRNVSTAMKTPGV
                     HVSPAGAPAPTGSLPLAGQIIISEFRVRGPSGAQDEFIELYNASGADHTVTASGGTGY
                     GVAASDGVTRCTIPNGTVIPNRGHYLCVNSAAYSLASYPAGNGTTATGDATYTTDIPD
                     NAGIAIFDNNLGGANYNLANRLDAVGSTSEADTLYKEGTGYPALTPFSIDYSFYRDTC
                     GKQGSITTVGPCPSGGLPVDTDNNAPNFVFVDTNGTSAGAGQRLGSPGPENLSSPINR
                     NGVFAINLLDATVAAANPPNRVRDFTSDPANNSTFGTISIRRRFVNNTGGNVTRLRFR
                     VVDQTTFPAPSGFADLRTRTSGAVVVAGINDSATCAATGAPAIPPCTVTVQGTTLEQP
                     PSQPNGGAFNGSYSAGTVTLGTPLANGASINLQFLLGLQQTGTFKFFINIEALP"
     gene            complement(1890..>2116)
                     /locus_tag="VIJ87_11935"
     CDS             complement(1890..>2116)
                     /locus_tag="VIJ87_11935"
                     /inference="COORDINATES: protein motif:HMM:NF033537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lasso peptide biosynthesis B2 protein"
                     /protein_id="HEY5445148.1"
                     /translation="WKRAAVLRRYLSQSGIATQIIFGVRNEAKGMVEGHAWLEADGKP
                     FLEKTPPDYVVTYTFPSDIRREPDLVFLSK"
BASE COUNT          489 a          581 c          524 g          522 t
ORIGIN      
        1 cccggaaact ggtgcgccga tcttaggttc ttttttctaa ccccttttta ccctcaagat
       61 ttcccatatc agacacggtg agacaggaga ctggccacta ggggactgtc aaacttggtt
      121 caatgttctt tacggtccca gtgttcaagt tttcctataa cagcaggccc gatagtgtta
      181 gcctcttaac aaattcttgg gcactagtca cggaaatgtg ccattaattg tcgttgacgc
      241 tgctcaagcg tgcgtggtag tttttgaggt cccacatgct catcgttttc agtgggccca
      301 taatcaagga gaaaagaatg ttgaagtcat ctcggctttc agtggttttt gcgtctctgg
      361 ttgtcctgat cctcctggtt caaattactg cccttgcggg caatactcag agtcaggagc
      421 catctgctgg cagcaagact tcgcagaagg tgaaatcgtc taagaaacgg aagaagaaga
      481 aggttgcctc cgtgccctac ttggtacttg gctccgctac tcagaccgta cctgtggaat
      541 tgaaatcagt aacagttact cctgtaactg aatctgctcc tgaacccaga aatgtctcga
      601 cggccatgaa gactccgggt gtgcacgttt cacctgcggg tgcgccagcg ccaacgggat
      661 ctctaccgct tgccggtcag ataatcatct ctgagtttcg tgttcgtggt cccagtggcg
      721 cccaggacga attcatcgaa ctctacaacg ccagcggagc agatcatact gtaacggcct
      781 cgggtggcac cggttacggt gtcgctgcgt cagatggcgt tacgcgatgc accattccga
      841 atgggacagt aattccaaac agaggccact atctttgtgt taatagcgcc gcctacagtc
      901 tcgcgtcata tccagcaggc aatgggacaa cagcaacggg tgatgcgact tacaccactg
      961 acattcccga taatgcggga attgcgatct tcgataacaa cctcggcggc gccaactata
     1021 acttggctaa ccgactcgat gcggtaggtt ccaccagcga agccgacacc ttgtacaaag
     1081 aaggcactgg ctatccagcc ttgacaccct tctctatcga ctattccttc tatcgagaca
     1141 cctgcggcaa acagggatcg ataacgactg taggtccgtg cccttcaggc ggtctgccgg
     1201 tggacaccga caacaacgcc cctaacttcg tgtttgttga cacgaacgga acttcagcgg
     1261 gtgctggcca gcgtctcggt tcacctggtc cagaaaatct ttcttctccg atcaatcgta
     1321 acggcgtctt tgcaataaac ctgctcgatg cgacggttgc tgccgcgaat ccgccaaatc
     1381 gtgttcgcga cttcacctct gatccagcca acaactccac tttcggcacg atatcgattc
     1441 gtcgccgctt tgtgaacaat actggtggga atgtgacaag acttcgcttc cgcgttgtag
     1501 accaaaccac gttcccagcg ccttcaggtt tcgctgactt acgcacacgc acctcgggag
     1561 cagttgtagt cgcgggtata aacgactcgg caacctgcgc ggccacagga gcgccagcta
     1621 tacctccctg cacagtaacc gtacagggta ctacccttga gcaacctcca tcacaaccga
     1681 atggtggcgc gtttaatggt tcgtattcgg ctggcaccgt taccctgggg acaccactcg
     1741 cgaatggtgc ctcgataaat cttcagttcc tgttgggtct ccaacaaacc ggaacgttta
     1801 agttcttcat caacattgag gctttgccat aaggcaagct ttttagttgt tgagtgttat
     1861 cagcggggcg tggaaacacg cctcgctttt tatttggaaa ggaaaactaa gtctggttcg
     1921 cgacgtatgt ctgagggaaa cgtataggtg acgacataat cgggcggagt cttttccaga
     1981 aacggtttgc cgtccgcttc gagccatgca tgtccctcga ccataccctt agcttcgttg
     2041 cggacaccaa aaatgatctg agttgcgatc ccactttgtg aaagatagcg acgcaggaca
     2101 gcggcgcgct tccaac
//
LOCUS       DATCGC010001232         1351 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_250584, whole genome shotgun sequence.
ACCESSION   DATCGC010001232 DATCGC010000000
VERSION     DATCGC010001232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1351)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1351)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1351
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250584"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(229..1260)
                     /locus_tag="VIJ87_11940"
     CDS             complement(229..1260)
                     /locus_tag="VIJ87_11940"
                     /inference="COORDINATES: protein motif:HMM:NF021613.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease H-like domain-containing protein"
                     /protein_id="HEY5445149.1"
                     /translation="MRGNIPIPEIPHGEDIWLIVAVTSIRSRRTQQGVLYCEAIGRNS
                     TGTIALKIWGEVLDTQGELQAGLWGITGKLETFQDRSQFVVSEYRPITIEKYREHQTT
                     DPVLPRAFTFDIETLTLPDFRERVGPQLERLLRLGNMRLEQQQRYLDDIAAEEERCYS
                     LGSLSATSGRVLSIAVHVGPIPGLEFVGMEQPETEHVFGIDADGFEQGERRALFDFLE
                     LMKHFDLESDELVGHNIIGFDLPFIFQRCLVHGIQVRPFVNLSEFHVRGVFDTMHRWW
                     LGAKRNVSLDDIAWALGIESSKTSEVEGSKVFDLYQAGKLDVIREYNLNDVRVTRKVY
                     ERIVASFGR"
BASE COUNT          335 a          328 c          341 g          347 t
ORIGIN      
        1 tgtcgattcg tttttgaact tcggccggtg aactagaatg ccgagcgacg agcttaccga
       61 ctggttcaag actcatcccg cacgaccggc agaattgctg ttcgtgagta gcagggtttc
      121 cacaggttgg gcaatgcatt aaataaatgg ccttaggttt ttggtcttgg gtctttgacg
      181 ttcgatgaat tgaagcgcga gctaagaagg ccaaagacca aatcgcttct atctcccaaa
      241 actcgcaaca atcctctcgt acactttgcg cgtaacgcgc acgtcgttga ggttgtattc
      301 gcgaattacg tccagttttc ccgcctggta caaatcaaag actttgctgc cctcgacttc
      361 agaagtcttg cttgactcga ttcccaaagc ccaggcgata tcgtcgagac taacgttgcg
      421 tttagcgcca agccaccagc gatgcatcgt gtcaaacact ccgcgcacgt ggaattcact
      481 taagttaacg aagggacgaa cctgtatgcc atggactaag caacgttgaa aaatgaacgg
      541 caagtcaaac ccgatgatgt tgtggccgac cagttcatct gattccaaat cgaagtgctt
      601 cattaattcg aggaagtcaa acaatgcccg tcgctcacct tgttcgaagc catcggcatc
      661 aattccaaat acgtgttctg tttctggttg ttccattccc acaaactcaa gacccggaat
      721 tgggccgaca tgaacagcta tggacaagac ccgtccggac gtcgcactca acgatccgag
      781 ggaatagcag cgttcttctt cggcggcaat gtcgtcgaga tagcgttgct gctgttcaag
      841 tcgcatattg ccgagacgta acagccgttc aagttgtgga ccgactcgtt cacgaaaatc
      901 cggaagcgtc agcgtttcga tgtcgaaagt aaaagcacgt ggcaaaacgg gatcagtcgt
      961 ttggtgctcg cgatattttt cgatggttat tggtcgatac tcagaaacaa caaactgcga
     1021 gcgatcttga aacgtctcaa gctttccggt gatgccccaa aggccggctt ggagttcgcc
     1081 ctgtgtatcg agtacttcgc cccagatctt gagagctatc gtgccggttg agttgcgacc
     1141 tatggcttcg caatagagaa caccctgttg agtgcgacgg gaacggatag aggtgactgc
     1201 cactatcagc cagatgtcct cgccatgagg aatttcggga atagggatat tgcctctcat
     1261 tgggtagcgt gttgcgttgg ataaaaaaga ctatttttca ttggtcattg gagatttttc
     1321 atttgtcagt tgatgacttc ggacttagga g
//
LOCUS       DATCGC010001233         2006 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_184650, whole genome shotgun sequence.
ACCESSION   DATCGC010001233 DATCGC010000000
VERSION     DATCGC010001233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2006)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2006
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184650"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            212..1990
                     /locus_tag="VIJ87_11945"
     CDS             212..1990
                     /locus_tag="VIJ87_11945"
                     /inference="COORDINATES: protein motif:HMM:NF012688.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase"
                     /protein_id="HEY5445150.1"
                     /translation="MTNYEVIKTPQDLRRAIETLSSQPALGLDTETTDLDPLTSRLRL
                     IQLAAPDKVFIVDLDAFRNGDFSKSEALAPLRRLLADPRPIKIAHNAKFDAKFIKHNL
                     GVDLGGLFDTLLASQLVSAGDIEERHGLEAVANRYLNEAVDKTERLSNWEFELSEAQL
                     EYAARDAAVLLPLREKLIERLRAESLVRVAQLEFECVMTVVDIELAGFYMHKDRWLDQ
                     LGVVEKRRTELAEQLQQVLAEESSQGSLFGGPQREDINLDSHQQLTQALNRLGIPVPD
                     STRNWKMQPLAAQYPVIATLLEYRTVQKALTSYGENMIELINPVTHRLHADFRQIGAP
                     TGRFACTNPNIQQVPHAVEYRRCFSGHPEGRKLVIADYSQIELRILAEFSGDRGFSDA
                     FNSGADLHRVTASQVFNTSLDQVTKEQRDFAKRLNFGVVYGIGAQRFALMTGVTTPEA
                     ENVLRRYFGTYRGLDTYLKEAANRAVSDRQARTASGRLVRFRYDENDRQQISMTQRNG
                     KNTPIQGTSADILKRALKLLKEELAGTSSKIVNIIHDEIVVESDAGEAEAIAEKVERV
                     MCAAGEEYLKSVPVKVETEIADEWVK"
BASE COUNT          503 a          513 c          530 g          460 t
ORIGIN      
        1 ccgacagcgg ccttcctcgt gagtgcgatt ttgggagcga cagctgcact acttctttta
       61 ctcatggtga agcctcaccc gctccatctt gatttgaccc cgactcgaaa ctaagcggct
      121 ctgcgggtca ttgtggctgc gtttggagat cacctatcaa ttctttacga tggcctctct
      181 taaacagcga caacacccac gcatatcaga catgaccaat tacgaagtaa ttaagacacc
      241 acaagatctc agacgcgcta ttgaaacact ctcgagtcaa ccagctctcg gattagatac
      301 ggaaacaact gatctcgatc cgctaacatc ccgtctgcgc ctgattcaac tcgctgcccc
      361 cgacaaagtt ttcatcgtcg atctggatgc gtttcgcaat ggagattttt ccaagagtga
      421 agcgctcgca ccgctgcgtc gactgctggc agaccctcgg ccgatcaaaa ttgcccacaa
      481 cgcaaagttc gacgcaaagt tcatcaagca taacctcggc gtagatcttg gcggattgtt
      541 tgacactttg ctcgcgagcc aacttgtgag cgccggcgat attgaagaac gccacggact
      601 cgaagctgta gcgaatcgtt acctgaatga agccgtcgac aagacagaac gattaagtaa
      661 ctgggagttc gagctgtcgg aagcccaact cgaatacgcc gcgagggacg ccgcagtctt
      721 gttgcctctt cgagaaaagc taatcgagcg tttgagggcg gaatcactgg taagagtcgc
      781 ccaactcgag ttcgaatgcg tgatgaccgt tgttgacatc gaactcgccg ggttttacat
      841 gcacaaggat cgctggctcg atcaactcgg cgtcgtcgag aaaaggcgca cggaacttgc
      901 cgagcaattg cagcaagtac ttgccgaaga gtcgtcgcag ggatcactgt ttggcggtcc
      961 gcagcgcgaa gatatcaatc tcgattccca ccagcagtta actcaggcac tcaatcgtct
     1021 tggcattccg gttcctgatt caacacgcaa ttggaagatg cagccgttgg cagctcagta
     1081 tccggtcatc gccactctgc ttgaataccg caccgtgcaa aaggcgttga cgagttacgg
     1141 tgaaaacatg atcgagttga tcaatcccgt gactcatcgt ctgcacgctg acttccgaca
     1201 gattggcgca cctacgggac gatttgcctg caccaatcca aacattcagc aggtgccgca
     1261 cgctgtcgaa tatcgccggt gctttagtgg tcatccggaa ggacggaagc ttgtcattgc
     1321 cgactactcg caaattgagt tgcgcatcct ggcggagttt tccggtgatc gtggattcag
     1381 cgacgcgttt aattcaggtg ctgatctcca tcgcgtgacg gcgtcgcaag tgtttaatac
     1441 gtctcttgat caagtgacta aagaacagcg tgactttgca aagcgactga actttggtgt
     1501 ggtttacgga ataggcgcgc agcgttttgc cttgatgaca ggcgtaacga cgccagaagc
     1561 tgagaatgtt ttgcgacgct actttggaac ttatcgcggg ctcgatacct atttgaaaga
     1621 agctgctaat cgagcagtca gcgatcgtca ggcacgaact gcttcaggtc gcctggtgcg
     1681 tttccgttac gacgagaacg accggcaaca aatctcgatg actcaacgaa acggaaagaa
     1741 cacgccgatc cagggaacga gtgcggacat tcttaaacgc gcgctcaaac ttttgaaaga
     1801 agaactcgct gggactagtt cgaagatcgt aaacatcatc cacgatgaga ttgtggttga
     1861 gtcagatgct ggagaggccg aagcaatcgc tgaaaaagtt gagcgcgtga tgtgcgccgc
     1921 tggtgaggag tatctgaaaa gtgtgcccgt gaaagttgaa accgagatag ccgatgaatg
     1981 ggtgaagtag gtttcgagtt tcaggt
//
LOCUS       DATCGC010001234         5124 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_184652, whole genome shotgun sequence.
ACCESSION   DATCGC010001234 DATCGC010000000
VERSION     DATCGC010001234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5124)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5124)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5124
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184652"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            353..1444
                     /locus_tag="VIJ87_11950"
     CDS             353..1444
                     /locus_tag="VIJ87_11950"
                     /inference="COORDINATES: protein motif:HMM:NF024853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HEY5445151.1"
                     /translation="MFESSSIPYQFSSRIAPNATSLSIFGVLLLIVLFPLTLMAQRSE
                     TVVAKVGGEEITQAEVDDTVSSQVYALDQQLFNLRKAALNNLIGRKIIEREAARQKLA
                     VDQLKSKWMAGEVTIDQAQVTDLYQKNLPAFGLMNPEEAKEKLRLDLEAQSRLKRFRE
                     ELSALREKTTVEILLEEPRLRVTKSRDLRASKGPADAKVVITEFSDFQCPYCKEVQAT
                     LRKVLEAHSSDVRLDFRNLPLEGHPFALTAARSAHCGGKQGAFWKFHDALFESVEPSS
                     EKVLGIAQKLGLNVSAFKSCLESPETESAIGADLKEAQRLGLDGTPSFIINGKLLLGV
                     ASFEEFNNAILRELKKLTSQELGSSTSRK"
     gene            1458..3362
                     /locus_tag="VIJ87_11955"
     CDS             1458..3362
                     /locus_tag="VIJ87_11955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445152.1"
                     /translation="MKNRSLFLTLASLISLTIASTVIGQSEAGSGQFAGAVISKSKAA
                     LATPEEKLIRDVYAKVARLNRAAPTNPFDRSLSRENASLQFELSNFRTGPIREILSTL
                     AADLVSGPTGDVVQLARVTTRKNQAGETVSYRAEWVPGQYASMNDPNWTIANLMSFES
                     DKDYDVGEYASYVVTVKLLDQTRTYKALALFHNPHRYQGELRPTFWDAVVGFGGVITD
                     ISKETLPVSENSEADKDALSAISPNSTNSLTLNGTVWGNIVRGTTQDSKEHRDGAHGE
                     TVGFRGGCSPEPDNQQRCDVVITDTFTFENGELTNTVFFHSNKVAEKSEISTGSRTMR
                     VSCYAARGVATGNCTFLGCGFTPTLTGDFASVKMEGGDVWNGQLQYTKNCDPGIVAGG
                     SCTTPAWNGSCPIGTTPNGFGMCCFSGATTCDTAFVSRCYRFGGDFDFDTCTCTGCDT
                     CGGSPILIDINGDGITLSGPSSGVDFDLNGNGTRDRLGWTVANTDDAWLALDRNGNGA
                     IDNGAELFGDFTPQPAASNKNGFLALAEFDKPANGGNGDGLINREDPVFANLRLWQDT
                     NHNGLAEPAELHTLSSLNVKAFELDFKESKRVDQSGNEFRYKAKVKDTKDGTVGRWAW
                     DVFLSHTEPN"
     gene            3612..4094
                     /locus_tag="VIJ87_11960"
     CDS             3612..4094
                     /locus_tag="VIJ87_11960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445153.1"
                     /translation="MNSHVPQSPSWGVFKIALIPIVVLLLAVVGLAISAANARPEVVP
                     SSGSGTFSNQNGTIGSDSYAISPSTSAATARFDEQLKEAQHFQDFSPCFDDRGQRIGE
                     RAAMWMYSSEPKSFWRIVWTERRANYSAIYWVEADTLEGAKALEQNSQVKWRLCKATK
                     "
     gene            complement(4170..>5124)
                     /locus_tag="VIJ87_11965"
     CDS             complement(4170..>5124)
                     /locus_tag="VIJ87_11965"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEY5445154.1"
                     /translation="MRVVMSVHTGLNSLTLFTWGTEEQKQKYLVPQAKGEKLSTYGLT
                     EPGAGSDVVGARSTARRDGNEWVLNGEKMWISLADVADNFLFFCWTDEEKRRNRDHSG
                     MSCFIVERTMKGFSSGTIHGKLGIRAGNTGYFSLQDVRVPQANMVGEEGEGFKIAMFA
                     LEQGRYTVASGATGIIRASRDASVSYANTRETFGTKIGNHQLVKQKIAEMEADYQMSH
                     LLWLHAGYLKNEGKPNAKATSLAKWQATTRSEKAASMAIEVHGANGYSNDYPVERYLR
                     NCKAAIIYEGTRDIHTLMQADWALGLKKEKPARKVLPVWKK"
BASE COUNT         1294 a         1282 c         1282 g         1266 t
ORIGIN      
        1 tggttaaagc agaattactg ctgcgaacaa catttttatc ggtaaaggaa atcatgaact
       61 tggtaggact gccttcaagt cactatgttc gggagttcag gcgcgaatac gggctctcgc
      121 caactgagta ccgacagaag aacggcctaa caactaatag gagtcggaag aaatgagtcc
      181 gtagccgctt tggctataac ttagccgttt tcgacaacag agttttgttg actggtttca
      241 gtcgctgaaa tatcttcggg gccgtcacct cactaccgac taacgacagg tcggacaagc
      301 tcaaacgctt ctagactgtg ttcaactgcg acacgacttt ggagatacaa caatgtttga
      361 atcctcatca atcccttacc agttttcgag tcgcattgcg cccaatgcga ctagcctttc
      421 aattttcggg gtcttgcttc tcatagtgct tttcccgctg acgctcatgg ctcagagaag
      481 tgagacagtc gtcgccaaag ttggcgggga agagatcaca caggcggaag ttgacgacac
      541 ggtgagtagt caggtttacg cccttgacca acaactattc aacttaagaa aagcggctct
      601 caacaatcta atcgggcgga agattattga gagagaagca gccaggcaaa agcttgcggt
      661 agatcaattg aagagcaaat ggatggctgg agaagtgaca attgaccagg cacaggtaac
      721 cgacctctat caaaagaacc tgccagcgtt tggattaatg aaccctgagg aagcaaagga
      781 aaaactccga ctcgatcttg aagcacaatc gcgcctgaag agattccgcg aagaactgag
      841 cgctcttcga gagaagacta cggtggagat actacttgaa gagcctcggc tcagggttac
      901 gaaaagtcgc gacctaagag cctcaaaagg accagctgat gcaaaagttg tgattaccga
      961 gttttccgat tttcaatgtc cctactgcaa agaggtccag gcaactttgc ggaaagttct
     1021 tgaagcacat agttctgacg tcagactcga tttcaggaat ttgccgttgg agggtcatcc
     1081 cttcgcactc acggctgcgc gttcagccca ttgtggaggg aaacaaggtg ccttttggaa
     1141 attccacgat gctctatttg aatccgtgga gccgtcgtcg gagaaggtgt tgggcattgc
     1201 tcagaaactg ggtctgaacg ttagcgcttt taagtcctgc ctggaatccc cggaaaccga
     1261 atcagccatc ggggctgatt tgaaggaagc tcagcgctta gggctcgacg gtactcccag
     1321 ctttatcatt aacggaaaac ttctgctcgg cgtcgcaagt ttcgaggaat tcaataatgc
     1381 gatcttgcgt gaactaaaga aactcacctc ccaggaactc ggatcctcaa cctctcgaaa
     1441 gtaaaggaaa tcagatcatg aaaaataggt cgctctttct cacactcgcc tcacttatct
     1501 cgctcaccat agcttcaact gtaataggac aatcggaagc cggctccgga cagtttgctg
     1561 gcgcagtgat ctcaaaatcg aaggctgcat tagctacgcc ggaagagaag ttgattagag
     1621 atgtgtacgc aaaagtggca agactaaatc gcgcagcgcc cacaaacccc tttgacagat
     1681 ctttgtcacg cgaaaatgct tcactccaat ttgagttgag caacttccgg acaggcccaa
     1741 tcagagaaat tctctcaaca cttgctgcgg atctagtgtc tggacctacg ggcgatgtcg
     1801 ttcaactcgc tagagtaact actcgaaaaa atcaagctgg cgaaacagtg tcataccgag
     1861 ctgagtgggt acccggacag tatgcctcaa tgaatgatcc taattggact atcgctaacc
     1921 tgatgagttt cgagtcggac aaagactatg acgttggaga gtatgcttcg tatgtcgtga
     1981 ctgtgaaatt actggaccaa acacgaactt acaaagcgct cgcgctgttt cacaacccac
     2041 atcgctatca gggtgagttg agaccaactt tctgggacgc ggttgttggg ttcgggggag
     2101 taataacgga catctcgaaa gagactttac cggtatctga aaactcggaa gcagacaagg
     2161 atgccttgtc ggcaatctcg cccaattcga ccaattcact aactcttaat gggacggttt
     2221 ggggcaacat agttcgcggt acgactcagg acagcaaaga gcatcgagat ggagcccatg
     2281 gcgaaaccgt cggctttagg ggtggctgca gtccagaacc tgacaatcaa caacgatgcg
     2341 atgttgtcat tactgacaca tttactttcg agaatggtga actaacgaat actgtcttct
     2401 tccattcaaa taaggttgcc gagaaatccg agatctcaac gggaagtcgc acgatgagag
     2461 tctcttgcta tgcggcccga ggtgttgcaa ctggaaactg taccttcctg ggttgcgggt
     2521 ttactccaac tctaaccggc gacttcgcct ccgtgaagat ggaaggcgga gatgtgtgga
     2581 atggtcaact tcagtacaca aagaattgtg atcccggcat cgtggcaggt ggaagttgca
     2641 caacaccagc ttggaatgga agctgtccta tcggcacgac gcctaacgga tttgggatgt
     2701 gttgtttctc tggtgcgact acttgcgaca cggctttcgt aagtcgctgc tacagatttg
     2761 gtggggattt tgatttcgac acctgcactt gtactggttg tgatacgtgt ggcggatctc
     2821 cgatcctaat cgatatcaat ggcgatggca ttacgcttag tggcccatcc agtggcgttg
     2881 acttcgattt gaacggaaat ggtacccgag atcgtctggg atggaccgtt gccaataccg
     2941 atgatgcgtg gcttgcactg gatcgaaacg gaaatggagc catcgataac ggcgccgaac
     3001 ttttcggtga ttttactccg caacctgctg cgtcaaacaa gaacggtttt ctggcgttgg
     3061 ctgagtttga caaacccgcg aacggtggca atggagatgg actgattaat cgtgaagacc
     3121 ccgtcttcgc caatttacgt ttgtggcaag acaccaatca caacgggtta gccgaacccg
     3181 ccgagcttca cacactctcg tcgctcaacg tgaaagcctt tgagctggac ttcaaagagt
     3241 cgaagcgagt ggatcaatcc ggaaatgagt ttcgttacaa agcgaaggtt aaagatacga
     3301 aggatggaac ggttggaaga tgggcttggg acgtgttttt gtctcacacc gaaccgaatt
     3361 aggtggcaac gattcgcacc ggttcgcgag tggatatcgc tgccacttgt ggacattctt
     3421 ggaacctgta aaggggtggg ttgccagagt gcagctcgcc cttttttgga tagccctcat
     3481 gccactggtt gagctacatt aggtccactt gtccttgggg agactcatct cagcgtagat
     3541 gagcaagcat tcagtcgaaa gttctcagac cccttaatct ggggattttc ataaaccaaa
     3601 ggaagtgtct tatgaactct cacgttcctc aatcaccctc ttggggtgtc ttcaaaattg
     3661 cgctgattcc aatagttgtt ttacttctag ccgtggtggg cctggcgata agcgcagcca
     3721 acgctcgacc ggaagttgtt ccatcctccg ggtccggcac attctcgaac caaaatggaa
     3781 ctattgggtc cgatagttac gcaatatcgc cctctacttc tgcagctaca gcaaggttcg
     3841 atgagcaact caaggaggct cagcatttcc aggacttcag cccttgtttt gatgaccgag
     3901 gccaacggat cggggagcgc gccgccatgt ggatgtactc gtctgagcca aaatcgtttt
     3961 ggagaattgt ttggactgag aggcgagcga actattcggc aatctattgg gtagaagcag
     4021 acactctgga aggtgcgaag gctctcgaac agaactctca ggtgaaatgg cgactttgta
     4081 aagccaccaa gtaaagtggc attcagtgga aaagccgtcg cgaatgccgc gacggctttt
     4141 tgcctattct gtccctacgc ccacgctgtc tacttcttcc acaccggcag cactttcctt
     4201 gccggctttt cctttttcaa gcctaacgcc caatccgctt gcatcaatgt gtgtatgtcg
     4261 cgagttccct cgtagatgat tgccgccttg caattgcgca ggtagcgctc gaccgggtaa
     4321 tcgtttgaat aaccatttgc gccgtgaact tcgatcgcca ttgaagcggc cttctcactc
     4381 ctcgtggttg cttgccactt cgccaggctc gtagctttcg cgtttggctt tccttcattc
     4441 ttcaaataac cagcgtgtaa ccacagcaag tgactcattt gataatccgc ttccatctca
     4501 gcaatctttt gcttcactaa ttgatggttg ccaatcttag tgccaaacgt ctcgcgcgta
     4561 tttgcatatg agaccgaggc atctcgggat gcacgaatga ttccggtcgc gcctgaagcc
     4621 accgtgtaac gaccctgctc caaagcaaac attgctatct taaaaccttc tccttcttct
     4681 cccaccatgt ttgcctgcgg cacgcgcaca tcctggagcg agaagtagcc tgtattgccg
     4741 gcacgaattc caagcttgcc gtggatagtg ccggacgaaa atcctttcat cgtgcgctcg
     4801 acgatgaaac acgacattcc actatgatct cggtttcgtc tcttctcttc atcggtccag
     4861 caaaagaaca ggaaattatc ggcaacgtcg gccaagctaa tccacatctt ctcaccattc
     4921 aacacccact cattgccatc tcgtcgagct gtagatctcg cgcccaccac gtctgagcct
     4981 gcacctggtt cagtcaaccc gtaggttgaa agcttttcgc ctttggcctg aggtactaag
     5041 tacttctgct tttgctcttc agttccccag gtaaaaagag tcagcgagtt cagccccgta
     5101 tggaccgaca taacgacccg cata
//
LOCUS       DATCGC010001235         1018 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_415185, whole genome shotgun sequence.
ACCESSION   DATCGC010001235 DATCGC010000000
VERSION     DATCGC010001235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1018)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1018)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1018
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_415185"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            73..666
                     /locus_tag="VIJ87_11970"
     CDS             73..666
                     /locus_tag="VIJ87_11970"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025004.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HEY5445155.1"
                     /translation="MSNDETISRRTALKILGVGVGVASAPSVFAQHPHPHTGVEMVPS
                     IDEQIPSQPHFFTPAEMTSISLMSDLIIPADEQSPGAKDAGVPAFIDLMISESSVETK
                     NLWRNCLVAVDQLCKKEFGNSFGTLSSEQQVTVLKLISRNEYQPRRIEERFFIAIKGL
                     TVDGYYTSELGIHQELRYKGNAYLKDFAGCTHPEHTS"
     gene            671..>1018
                     /locus_tag="VIJ87_11975"
     CDS             671..>1018
                     /locus_tag="VIJ87_11975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445156.1"
                     /translation="MRLKHERSNAIQAVTHSLRLWLVCLIILFSSAVASFGGVIKGVR
                     ERVPVVLSTDVGNEIDDQWAIVYLLLQPKFEVLGVMSAHAPTITAPAGKTSYRILVDV
                     VENRMGMRRHPPLI"
BASE COUNT          269 a          244 c          253 g          252 t
ORIGIN      
        1 cactgaccgg aataatcgcg cccgtcacat cactaatcgt ttccaaaaac tgaaatctga
       61 acgagcgatc aaatgtctaa cgacgaaaca attagtcgca gaactgcact gaagattctc
      121 ggcgtaggtg ttggtgtcgc aagtgctccg agtgtcttcg ctcaacatcc tcatccgcac
      181 actggcgtcg aaatggtgcc gtcgatcgat gaacagatac caagtcaacc tcatttcttt
      241 actccggccg agatgacgtc gatcagcttg atgagcgatt tgataattcc agctgacgag
      301 caatccccag gtgcaaaaga cgcaggtgtt ccggccttca ttgatttaat gatcagtgag
      361 tcatcagtcg aaacaaaaaa cctctggcgc aactgtctcg tcgccgtcga ccaactttgt
      421 aagaaagaat tcggtaacag tttcggtaca ttaagttccg agcaacaagt aacggttctg
      481 aaattgatta gtagaaacga ataccaaccc aggaggatcg aagagcgttt ctttatcgcg
      541 attaagggac tgacggttga cgggtattac acttcggagt tggggatcca ccaggaacta
      601 cgatacaagg gcaacgccta cctaaaagat tttgccggtt gcactcatcc agaacatacg
      661 agttaagagt ttgagactga agcacgagcg cagtaacgcc attcaggccg tgacccattc
      721 gctgcgcttg tggttggttt gtttgattat tcttttcagt tcagccgtcg cttcattcgg
      781 tggagtaata aagggagtac gtgagcgtgt gccagttgta ctttctacgg acgtcggcaa
      841 cgaaatcgac gatcagtggg ccatcgttta cttgcttctg caaccaaagt ttgaagtcct
      901 tggcgtgatg tcggcgcatg cgccaacaat taccgcaccc gcgggtaaaa cgtcctaccg
      961 gattctggtc gatgtggtcg aaaaccgtat gggaatgcga aggcatcctc cgttgatt
//
LOCUS       DATCGC010001236         1130 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_319382, whole genome shotgun sequence.
ACCESSION   DATCGC010001236 DATCGC010000000
VERSION     DATCGC010001236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1130)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1130)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1130
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_319382"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            52..>1130
                     /locus_tag="VIJ87_11980"
     CDS             52..>1130
                     /locus_tag="VIJ87_11980"
                     /inference="COORDINATES: protein motif:HMM:NF015684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HEY5445157.1"
                     /translation="MIGFSRMGTDSEIVAMRSAGVGTWTMLWPVLLLGLVLTGSTIYI
                     QLKEVPEAARDLEKVALQGALAKLDSPVDPRSFTTLPGYVIYVRDGDKAQGTWGRVFI
                     YGQQPDHSTQIFTARSGRIDSSGDQSELVLTDVLGTRFPPPESQTKKEYVVERSDQLR
                     FSINTGRADIMQRLSQRDVNADALDWSDLRDRVRAGKEPEAREAIRILNRRTALAFAP
                     LVFSLLAGALGLRIRRGGRSTGIILSLVAVVVYYLISLLGESLARVGTVSPYVGPWLA
                     TAMTLLLAILLLLRNRVPSFSFRRFAQGRSGKEESQAISRSKQQTVSVGGWGFPNLMD
                     ATLLRTLALSFLVGFIALAAIFNIFT"
BASE COUNT          236 a          287 c          318 g          289 t
ORIGIN      
        1 ttcccgggaa tcctcagctt cacaatcccc ctagctactt tggccggaat attgatcggc
       61 ttctcacgga tgggaaccga tagcgagatt gtcgcaatgc gttcagccgg ggtcggtacc
      121 tggacgatgc tatggcccgt attgctactg ggactagtct tgaccggttc cactatctac
      181 attcaactta aggaagttcc tgaagctgca cgggaccttg agaaagtcgc gctgcaaggc
      241 gcgctcgcca agttggactc gccggttgat ccacgttcat tcaccacact gcctggctat
      301 gtgatctacg ttcgagatgg agacaaggct caaggcacat ggggtcgggt ctttatctac
      361 ggccaacagc cggaccattc gacacagatt tttacggcaa ggtcaggcag gatagattct
      421 tcgggcgatc agtccgaact tgtgttgacg gatgttctgg gaacaaggtt tccgcctccc
      481 gagagtcaga ctaagaagga atatgtagtt gaacgctcag accagttaag gttttctatt
      541 aacactgggc gcgcggacat catgcaacgc ctcagtcagc gagacgtcaa tgccgatgca
      601 ttagattgga gtgatttgcg tgacagagtt cgagctggaa aagagcctga ggcaagggaa
      661 gcgataagga tcttgaatcg gcggactgcc ttggcgttcg cacccctggt gttttcattg
      721 ttagcggggg cgctcgggct tcgaataagg cgcgggggaa ggagcactgg aatcattctc
      781 tcgttggtcg ccgttgtcgt ttactacttg atctcgctcc ttggtgaatc gctggcaaga
      841 gtcggtacgg tttcgcctta tgttggacca tggctcgcca cagcgatgac gctgttgctc
      901 gcaattctac ttcttttgcg gaaccgagtt ccttcgttct cgtttcgtcg cttcgcgcaa
      961 ggtcgttcag gaaaagagga atcacaagcc atctctcggt caaagcagca gaccgtcagt
     1021 gttggcggct gggggtttcc aaacttgatg gacgcgactc tgctccgaac cttggctctc
     1081 agtttccttg tcgggttcat tgccctggcg gccatcttta atatcttcac
//
LOCUS       DATCGC010001237         1535 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_350398, whole genome shotgun sequence.
ACCESSION   DATCGC010001237 DATCGC010000000
VERSION     DATCGC010001237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1535)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1535)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1535
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_350398"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(120..>1535)
                     /locus_tag="VIJ87_11985"
     CDS             complement(120..>1535)
                     /locus_tag="VIJ87_11985"
                     /inference="COORDINATES: protein motif:HMM:NF012686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445158.1"
                     /translation="SFIGYEFQGIGKFCKVFLPWDLSPNTYAILLMSITAIYVVLGGM
                     LSVVITDFAQFCLMALSAIVIGVIAITKVDAGMLDQVTPAGWRSLSFGWDITLNWSTL
                     LPAMNGHIAKEGIASMFGLFFIVMVFKGILVSMAGAAPNYDMQRILAAKDSREASLMS
                     AIVSVCLVPRWILIGGITLLGLVFVTPEFRKMGDNIDFETVLPYVINRFLPAGLVGVL
                     LAGLLSSFMANFSATVNAGAAYLVNDIYKKHINPEADNRKLVRISYLGSVLILIAGIV
                     IGMYLRSITQITQWIVGGLYGGYTAANILKWYWWRFNGYGYFWGMLIGIVAALAVPAT
                     LPSIAPSFHDPTYAYPVILLLSFIGCIVGALMTKPVEDEVLKNFYKNVRPWGFWKPVH
                     AMVAAEDPTIKRNTDAPRDLLNCLVGIPWQLMLVTIPLYVIFRDVRGTVISLVVLISA
                     SIFLKKFWYDRLEVGEGGVKE"
BASE COUNT          424 a          441 c          351 g          319 t
ORIGIN      
        1 gagagcatcg acgagccaca cgctaccgcg aggtggtact gactaagttc ccactatgtc
       61 ccgaaactat tgtcagaaaa caaaccctca atccttactt cccaaaacat gcgcagcatt
      121 cactccttta cgccaccttc accaacttcc aatcggtcgt accagaactt cttcaagaag
      181 atcgaggcgg agatcaacac gaccagcgag atgaccgtcc cacgcacatc gcgaaagatc
      241 acgtacagag gaattgtcac caacatcaac tgccagggta ttccgaccag gcaattaagt
      301 agatctcgcg gtgcgtccgt gttgcgtttg atcgttggat cttcggctgc gaccatcgcg
      361 tgcaccggct tccaaaatcc ccagggccgc acattcttgt agaagttttt caaaacctca
      421 tcttcaactg gtttcgtcat gagcgcacca acgatgcacc cgatgaacga caacagcagg
      481 attaccggat atgcgtaagt cgggtcgtga aaacttggcg cgatcgaggg cagcgtcgcc
      541 ggaaccgcaa gcgctgcgac aataccaatc agcattcccc agaagtatcc gtaaccgttg
      601 aagcgccacc agtaccactt caaaatgttt gccgcggtgt agccaccgta gagtccgccc
      661 acgatccatt gggtgatctg agtgatcgat cgcaaataca ttccaatcac gatgccggca
      721 atcagaatca gcaccgaacc caggtagcta atcctcacca acttacgatt atcggcttca
      781 ggattgatgt gcttcttgta aatatcgttc acgaggtagg cggcacccgc attcaccgta
      841 gcgctgaagt tcgccatgaa cgacgacaac aaacccgcta gcaacacccc aactagacca
      901 gcaggcagaa accgattgat gacgtaaggc agcacagttt cgaagtcgat gttgtcgccc
      961 atcttgcgaa actcgggagt tacaaaaacc aaaccgagaa gcgtaattcc gccgattaga
     1021 atccaacgcg ggacgagaca gactgatacg atcgcgctca tcaagctcgc ttctcgagaa
     1081 tctttcgcag ccaggattcg ctgcatgtcg tagttgggtg cggcaccggc catgctcaca
     1141 aggattcctt tgaaaaccat cacgatgaag aacaagccaa acatcgaggc gatcccttct
     1201 ttcgcaatgt gcccgttcat tgccggcagt agcgtgctcc agttcaacgt gatgtcccac
     1261 ccgaacgaca aacttctcca acctgccggg gtaacttgat cgagcatgcc agcgtctact
     1321 tttgtgattg cgattacgcc aatgacaatc gcggacaaag ccatcagaca aaactgggca
     1381 aagtcagtga ttacgacgct caacattccg ccaagcacca catatatcgc tgtgatgctc
     1441 atcagaagga tcgcgtaagt gttgggtgaa aggtcccagg gcagaaacac tttgcagaac
     1501 ttacctatgc cctggaattc gtaaccaata aaact
//
LOCUS       DATCGC010001238         1008 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_85838, whole genome shotgun sequence.
ACCESSION   DATCGC010001238 DATCGC010000000
VERSION     DATCGC010001238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1008
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85838"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..774
                     /locus_tag="VIJ87_11990"
     CDS             <1..774
                     /locus_tag="VIJ87_11990"
                     /inference="COORDINATES: protein motif:HMM:NF016269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-binding SYLF domain-containing protein"
                     /protein_id="HEY5445159.1"
                     /translation="SLVEKRKETMRNNRIIFWFSVMSLVLLTVLAANSQTRKPKSKVE
                     PPFRGPNTKEGASQAQKSSKVLREIMGTPDQGIPSDLLDRAECVMVFPQVLKAGFIVG
                     GQRGRGVASCRTRFGWSAPAYFEMKGGSIGFQIGGQATDFVLLFMNESGMKNLLSDRF
                     EMGGEGSVAAGPVGRTTTASTDAKMDAQILSYSRSKGLFAGVSLKGSVISPDESDMEG
                     TYGNGVTATTILAANKKRAPAEVQVFPNTLAQYSSRTAN"
BASE COUNT          252 a          243 c          295 g          218 t
ORIGIN      
        1 tcgctagtgg aaaaaaggaa ggaaacaatg cgaaacaatc gaatcatatt ctggttctca
       61 gtgatgagtc ttgtgcttct cacggtactg gccgccaact cacaaacaag aaagcccaag
      121 tcaaaggtgg aaccgccctt ccgtggtcca aacacgaaag aaggtgccag ccaggctcaa
      181 aagtcgagca aagttttaag agagatcatg ggaacgcccg accagggtat cccaagtgat
      241 ctactagata gggcggagtg cgtcatggtt tttccgcagg tcctcaaggc tggattcatc
      301 gttggtggac agcgtggtcg cggggttgcc agttgtcgaa cgcgtttcgg ttggtctgct
      361 ccagcttact ttgagatgaa ggggggcagc attggcttcc agatcggtgg ccaagcaacc
      421 gacttcgtgc tgttgttcat gaatgagagc ggtatgaaga atttgctctc tgataggttc
      481 gagatgggtg gtgaaggttc cgtggctgct ggtccagtag gaagaaccac caccgcttcc
      541 accgatgcga agatggacgc gcagattctg tcttactctc gtagcaaagg attgttcgcc
      601 ggcgtttcgc tcaaaggatc ggtcatctca ccagacgaaa gcgacatgga agggacatat
      661 ggcaacgggg taacggccac gacgatcctt gccgcaaaca agaaaagagc gccggcggaa
      721 gttcaagtct ttccgaatac actggcgcag tattcgtcac gaactgcaaa ctgaaagcct
      781 cggagagtcc gctgatactg gggatgggaa tcggttacca gaccgccatc accgacttac
      841 gtagatcccg agttaccgca gtattggcag cgtcgtgggc aagattgcgt ttgctgattg
      901 agtgaactgg tcagactaca acctactcgg ctcgtagtgc ggtcatcgga tcgactgatg
      961 cggctcgccg tgccggaagg aagctggcca ataatgctga agctccca
//
LOCUS       DATCGC010001239         1029 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_484334, whole genome shotgun sequence.
ACCESSION   DATCGC010001239 DATCGC010000000
VERSION     DATCGC010001239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1029
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_484334"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..924)
                     /locus_tag="VIJ87_11995"
     CDS             complement(<1..924)
                     /locus_tag="VIJ87_11995"
                     /inference="COORDINATES: protein motif:HMM:NF017727.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NnrS family protein"
                     /protein_id="HEY5445160.1"
                     /translation="MHATDLITRDAFLPDVIAQYPATRSVFDRYGLHGCGGELGPREQ
                     IGWFARLHGVQIDNLLRELNAASTQSSAVAEFSPSIADTIYRPFFLAGIVTVLTLGCM
                     WGAINLLTIGLKGSFNSVSYSWVLAHAHAMVFGFVGFFIMGFAYQAIPRFKHASLWRP
                     RLAFSALPLMVLGILLQTIAHLSSPPSFNLEIVAALIQATAVVVFALSMFKTIRQAKK
                     PENYDRFLYAALGWFLIAAIANPIIFKLFELPGSHQELLHNLATFNIPYRDVELLGLA
                     VVMILGVSLRLLPHAYGFREPSQRWVSFLFWG"
BASE COUNT          268 a          245 c          291 g          225 t
ORIGIN      
        1 tccccaaaat agaaacgaca cccatcgttg cgaaggctcg cgaaagccat aagcgtgcgg
       61 caacaatcgc agcgacacgc ccagtatcat cactactgcc aatccgagta attcgacatc
      121 gcgataaggg atattgaatg tcgccaggtt gtggagcagt tcctggtgac tgccggggag
      181 ttcgaacaac ttaaagatga tcgggtttgc gatcgcggct atgaggaacc aaccgagcgc
      241 ggcgtagaga aaacgatcat agttttccgg cttcttcgct tgtcggatgg ttttgaacat
      301 cgacagggcg aacacaacca ctgcagtcgc ttgtatgaga gcagctacga tttcaaggtt
      361 gaacgaaggt ggtgacgaaa gatgggcgat cgtctgtagc aatattccca ggaccatcaa
      421 cggtagtgct gagaacgcta gtcgcgggcg ccataagctg gcatgtttaa atcttggaat
      481 tgcttggtac gcaaaaccca ttatgaagaa cccgacaaag ccgaaaacca ttgcgtgagc
      541 gtgggccagc acccatgaat agctcacact gttgaaactt cctttaagac caattgtcag
      601 gagattgatt gcaccccaca tgcagccgag tgtcagtacc gtgacgatcc cggcgagaaa
      661 gaatggtcga tagattgtgt ctgcaatcga cggcgagaat tcggcgactg cagaggattg
      721 tgttgaggca gcgtttaact cacgaagcaa gttgtcgatc tgaactccgt gcaagcgcgc
      781 gaaccagccg atttgttcgc gcggtccaag ctctccgcca caaccgtgca acccgtagcg
      841 atcgaagacg gagcgtgtgg ctgggtattg cgcaattaca tcgggaagaa aagcgtctcg
      901 agtaatgaga tcggtggcgt gcatgttttt tgtagcggcc aggtatctat gacagcagtt
      961 gcgcttctac ctcgatggcg cggggaaaga gaatattgtt ctccaggtga atgtgctgat
     1021 gcaggtcct
//
LOCUS       DATCGC010001240         2220 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_216511, whole genome shotgun sequence.
ACCESSION   DATCGC010001240 DATCGC010000000
VERSION     DATCGC010001240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2220)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2220)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2220
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216511"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..256)
                     /locus_tag="VIJ87_12000"
     CDS             complement(<1..256)
                     /locus_tag="VIJ87_12000"
                     /inference="COORDINATES: protein motif:HMM:TIGR02532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HEY5445161.1"
                     /translation="MNCRRQSGFSLIELLVVVAIIGIIAAIAIPNLLASRRSANEGSA
                     QSSIRTIHSAEATYQATAGQGAFGTLANLMGESLVDSVLGQ"
     gene            complement(614..1105)
                     /locus_tag="VIJ87_12005"
     CDS             complement(614..1105)
                     /locus_tag="VIJ87_12005"
                     /inference="COORDINATES: protein motif:HMM:NF019575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEY5445162.1"
                     /translation="MTMKRQQGFSLIELLIVVAIIGIIAAIAIPNLLASRRAANEGSA
                     QSSTRTLFSAEATYQSTAGAGGFGTLSELMGASLVDSVLGQADTATTAKSGYIFTVGG
                     IGGSGATAVFYAHCVPATTSGVSQTGTRRFGLTQTGVLRGDTTLSAPADGAAVEAMQA
                     LGN"
     gene            complement(1399..1890)
                     /locus_tag="VIJ87_12010"
     CDS             complement(1399..1890)
                     /locus_tag="VIJ87_12010"
                     /inference="COORDINATES: protein motif:HMM:TIGR02532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEY5445163.1"
                     /translation="MTTKRQEGFSLIELLIVVAIIGIIAAIAIPNLLASRRAANEGSA
                     QSSTRTIFSAEATYQATSGNGAFGSQANLMGASLIDSVLGQATTAASAKSGYIFTVGG
                     IAGNGATATFFAHCVPATTSGVSQTGTRRFGLTQTGVLRGDTTLSAPADGAAVEAMQA
                     LGN"
BASE COUNT          542 a          564 c          597 g          517 t
ORIGIN      
        1 cttgtcccag aactgagtca acgagtgact cacccatcag gtttgcaagc gtaccaaacg
       61 ctccctggcc agcggtggcc tgatatgtgg cctcggcact gtggatggtt cggatcgacg
      121 actgggcaga tccttcgttg gccgagcggc gggaagcaag aagattcggt atcgcgatcg
      181 cggcaataat tccgatgatc gcaactacca ccagaagctc gatcaaagag aagcctgatt
      241 ggcgcctaca gttcatatcg tacttacgct ccttatcatt tgaagaatct ttcgcgccac
      301 tgggaactgt tcgtcaacat agtgcgcaca ccacgcgaag tccgcctaac tcaaactaca
      361 agggccgtgc cacgaaagaa ctgtgtgact cagttcgcag ctctgtcaga tgctgaaaaa
      421 ctcctaacga aaatgatggc tcccactttc gaccattcta gcgagaataa gtctgacaaa
      481 tttcgtcaaa cgctaacgcg tctttttgtc acaacctaat caggttggct ttctgattcg
      541 atctagaaac acagaaaaag gagcgaggcg catggcctcg ctccctcttt cgtatagcac
      601 ttggctaagt agcttagtta ccgagagcct gcattgcttc aacggctgcg ccgtcagcag
      661 gggcactcag cgtggtgtcg ccacggagca cgccggtctg agtaaggcca aagcgacgag
      721 taccggtctg tgacacaccg ctcgtggttg ctggaacaca gtgagcgtag aacacagctg
      781 ttgcaccgct tccaccgatt ccaccaaccg tgaaaatgta accgctcttg gcggtggttg
      841 cagtgtcggc ttgccctaga accgagtcaa caaggctcgc acccatcaac tcactaagtg
      901 ttccgaatcc acctgcacca gccgttgact ggtaggtagc ttcagcgctg aagagcgtac
      961 gagtcgacga ctgagcagaa ccttcgttag ccgcacgacg tgatgcgagg agattgggga
     1021 ttgcgatggc ggcgatgatg ccgatgatcg cgactacgat cagaagttca attagagaga
     1081 agccttgctg gcgtttcatt gtcattcgtt gctccttgga gaagtatcat ggttgttcgg
     1141 tatagcctct gggcttcgcg tccgatccat atcgcgcaaa acgctactgg caaacgtttc
     1201 gcctacaagc cttgtgccaa attggcgaaa tggcaaaact aaggcagcct tccgtgtgcc
     1261 aattcagaaa tgacaacttg tgatactgga cgaataacga tttttgtcag ttggtccagg
     1321 gctcaggaaa tttgttcatt acatgcaaaa agagggtgga caagtccacc ctcttccgta
     1381 gcaaatatct aggactaatt agttaccgag agcctgcatt gcttccacgg cggcgccgtc
     1441 agcaggggca ctcagcgtgg tgtcgccacg gagcacgccg gtctgagtta agccgaagcg
     1501 acgggtaccc gtctgggata caccactcgt ggtggctgga acacagtggg cgaagaaagt
     1561 ggcggttgcg ccgttaccag ctattccacc aaccgtgaaa atgtaaccgc tcttggcgct
     1621 agctgcagtc gtggcctggc caagtacgga atcgatcagg ctggcgccca tcaggttggc
     1681 ttgtgagcca aatgcaccgt taccgctggt ggcctggtag gtcgcttcag cactgaaaat
     1741 tgtgcgggtt gacgattggg ccgaaccttc attcgctgca cgacgtgaag cgagaagatt
     1801 ggggatagcg atcgcagcga taatgccaat gatcgcaaca acgatcagta gttcaattaa
     1861 cgaaaagcct tcttggcgtt tggtagtcat tctagtctcg tgctccttaa gagaaatagg
     1921 gggttctgct aaattctcgc gccaacggct ttcgtcactg tgtgatgccg cacagagcgc
     1981 gaactgtcca agccctctac aacaacactt gtgccactga atgctcgttt atggctgatg
     2041 tgaaactaag tgtgtttact gggtattcac tgttgaaggc aggtcttttt gaggtttact
     2101 gacaatttac ggcaggagtg aaatgacggt ttgtggcagg ttgcgaaagg gcaataactc
     2161 agcgacgtat ttactcagct aaacggaaaa agggaaggtc tgcacccttt aaatgtcttt
//
LOCUS       DATCGC010001241         2154 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_451936, whole genome shotgun sequence.
ACCESSION   DATCGC010001241 DATCGC010000000
VERSION     DATCGC010001241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2154)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2154
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_451936"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..189
                     /locus_tag="VIJ87_12015"
     CDS             <1..189
                     /locus_tag="VIJ87_12015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445164.1"
                     /translation="FQSSSRPEGKPKVDAFFVKAIVGHMYVAHVVDDMSDYYALFRVD
                     ALEHQTCSISWKLIPTPQ"
     gene            218..1480
                     /locus_tag="VIJ87_12020"
     CDS             218..1480
                     /locus_tag="VIJ87_12020"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020359689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0006534 - cysteine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEY5445165.1"
                     /translation="MLSTVDALATAEIDESWDVERIRADFPVLHQKVNGKPLIYLDNG
                     ASSQVPQVVIDRGSVYIEQEHSNIHRGVHYLSQRATTAYEGAREKVKRFINARESREC
                     IFVRGATEAINLVMHGYGRKFIGAGDEIIISAMEHHANIVPWQMLCEEKGAVLRVIPM
                     NDAGELLQDEYDGLLNERTKFVAVTHVSNALGTINPIKEMIAQAHKYGVPVLIDGAQS
                     APHMPVDVQDLDCDFYVFSGHKMYAPTGSGILYGKAELLEKMNPFQGGGDMIKTVTFE
                     KTTYAELPNKMEAGTPAIASQIGLGAAIDYLNSIGREQAAVYEAELLRYATERVSAIE
                     GVRIIGTAKHKASVLSFVIDGIHPHDIGTILDQEGIAVRAGHHCAQPVMQRFNVPATA
                     RASFAFYNTKEEIDVLATTIEKVIEIFS"
     gene            1587..2036
                     /locus_tag="VIJ87_12025"
     CDS             1587..2036
                     /locus_tag="VIJ87_12025"
                     /inference="COORDINATES: protein motif:HMM:TIGR01994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system NifU family Fe-S cluster assembly
                     protein"
                     /protein_id="HEY5445166.1"
                     /translation="MSELSELYQQVILDHNKKPRNFRKIEPATHTAEGHNPLCGDQLT
                     IYVDLESGEVKDVAFEGSGCAISKASASMMTQAVKGKSKEHAEELFKEFHSMVTGELD
                     TEQQDNELGNLKIFAGVREFPVRVKCATLPWHTLHAALNKQELVSTE"
BASE COUNT          580 a          474 c          581 g          519 t
ORIGIN      
        1 tttcaatcat cgtcaagacc tgagggcaaa cctaaggtcg atgcgttctt tgtgaaggcg
       61 atcgttggtc acatgtatgt tgcccacgtt gttgatgaca tgtctgatta ctacgcgctg
      121 tttcgagtcg atgctttgga acatcagact tgttcgatct cgtggaaatt gatcccaaca
      181 cctcaataat gatctggttc gaaaaatgac caatacaatg ttgtcaacag tagatgcttt
      241 agcaactgca gaaatcgacg agtcgtggga cgttgaacgg attcgcgctg actttcccgt
      301 gcttcatcag aaggtgaatg ggaagccact gatctatttg gacaatggcg cgtcatcgca
      361 ggtaccacag gtcgtcattg atcgtggcag tgtctacatc gaacaagaac actcaaacat
      421 tcatcgtggc gttcattatc tcagtcaacg cgcaaccacc gcttacgaag gtgcgcgcga
      481 gaaagtgaaa cgcttcatca atgctcgtga atcgcgcgag tgcatctttg taagaggtgc
      541 gaccgaagcg atcaatttgg tgatgcatgg ctacggtcgg aagttcatcg gcgcaggcga
      601 cgagatcatc atctcggcga tggaacacca cgccaacatt gttccctggc aaatgctttg
      661 tgaggaaaag ggagcagtgc tgcgtgtaat tccgatgaat gatgcgggag agttgttgca
      721 ggatgagtat gacggcctac tgaacgagcg cacaaaattt gtcgccgtca cgcacgtttc
      781 caatgctctc ggaacaatca acccgatcaa ggaaatgatt gctcaggctc ataagtatgg
      841 tgtgcctgta ttaatcgacg gtgcgcagag tgcgccgcat atgcccgtcg atgttcagga
      901 tctggattgt gacttctacg tgttttcagg tcacaagatg tacgcgccga cgggaagcgg
      961 gattttgtac ggcaaggctg aattgctgga gaagatgaat cctttccagg gtggcggcga
     1021 catgatcaag accgtgacct ttgaaaagac tacgtatgcc gaactgccga acaagatgga
     1081 agccggaacg ccagccattg cgtcacagat tggacttggt gcagcgatcg actacttgaa
     1141 cagtatcgga cgtgagcagg cggctgttta cgaagcggaa ttattgagat atgcaaccga
     1201 acgcgtttcg gcaatcgaag gggtgcgaat aatcggcacg gcgaaacaca aagcaagtgt
     1261 gctttcattt gtaatcgatg gtattcatcc acacgacatc ggtacgattc tcgatcagga
     1321 aggaatagca gtgcgtgctg gacatcattg cgcacaacca gtgatgcaac gattcaatgt
     1381 tccggcaact gcgcgcgcgt cgtttgcctt ctacaacacg aaggaagaga tcgatgtgtt
     1441 ggcgacgacg atcgagaaag tgattgaaat atttagttag tgcaatgtcc gatatgcttt
     1501 agcttgtcga tgatgtttgg aaagctctgg atggagacaa cgacaagctg aagcatatcg
     1561 gacattcgaa aatctgcaaa tctcctatgt cagaactaag cgaactttac caacaggtca
     1621 tcctcgacca taacaagaag ccacggaact ttcgcaagat tgaacccgct acacataccg
     1681 cggaaggtca caatcctctt tgcggcgatc aactgacgat ctatgtagat ctggaaagtg
     1741 gcgaagttaa ggacgtcgct tttgaaggtt ccgggtgtgc tatttcgaag gcttcggcaa
     1801 gcatgatgac gcaggccgtt aaaggcaaga gcaaagaaca cgccgaggaa ctcttcaaag
     1861 aatttcactc gatggtgact ggcgaacttg atacagaaca acaggacaac gagttgggta
     1921 acctgaagat ttttgcggga gtgcgtgagt ttccagtgcg agttaagtgc gcgacgttac
     1981 cgtggcacac tctgcatgca gctttgaata agcaagagct ggtttcaact gaataggaaa
     2041 gttcgaaagc aggaatagag aagggcgtca cgagtgtgac gcccttcatt tgttttactt
     2101 ggttacgttg agtgttgtgg ttgttgtccc tactaactgt ccaccaacgt aaga
//
LOCUS       DATCGC010001242         1582 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_484371, whole genome shotgun sequence.
ACCESSION   DATCGC010001242 DATCGC010000000
VERSION     DATCGC010001242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1582)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1582
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_484371"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(138..1316)
                     /locus_tag="VIJ87_12030"
     CDS             complement(138..1316)
                     /locus_tag="VIJ87_12030"
                     /EC_number="6.5.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF013319.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008452 - RNA ligase activity [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RtcB family protein"
                     /protein_id="HEY5445167.1"
                     /translation="MPYEKLQLGGAQKEILSWANHEFSIEEQSMLRNVSRLPCLFKHV
                     ALMPDAHLGKGSMVGSVVATKEAVIPATVGVDIGCGMMAVKTPFKSGILDGKLKELRL
                     KIEEAIPTGFDAYKESVDESSYWDGWNDFKDLHEGVHDRKAKAMKQLGTLGGGNHFIE
                     VCLDTESRVWLMLHSGSRNIGKELAERHISTAKSLWRLSELPAPDLAYFIYGTPEFEA
                     YWKDLKWAQGYAMKNREIMMTRLLKVFNKMFNHRQSFKPEVAVNCHHNYVALEQHYGE
                     EVFVTRKGAINAASGTYGIIPGSMGAKSFIVKGRGLAESFNSCSHGAGRKLSRGAAKR
                     AFTKEDLERQTSGVECRKDVGVLDEIPGAYKSIEAVMKNQEDLVEVVAEIKQVVCVKG
                     "
     gene            complement(1416..1492)
                     /locus_tag="VIJ87_12035"
     tRNA            complement(1416..1492)
                     /locus_tag="VIJ87_12035"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1456..1458),aa:Lys,seq:ctt)
BASE COUNT          372 a          436 c          357 g          417 t
ORIGIN      
        1 actgtcgcca cgagttccca ggactcggat gctaacgcta caccacaccc agaagaatca
       61 gtttcgagtt tcgggtttca ggtttcgagt tctggtaacc ttgaacgtga aactcaaaac
      121 tcgaaactcg aaactgttta cccctttaca caaacaacct gcttgatctc agcgacaact
      181 tcaaccaggt cttcctggtt cttcattacc gcttcaattg acttgtaagc gccgggaatt
      241 tcatccagta cgcctacatc cttacggcat tcgacaccac ttgtctggcg ttccagatct
      301 tccttggtga acgcacgctt cgcagcgcca cgtgaaagct tacgccccgc cccgtgggag
      361 caagagttga agctctccgc caagccgcgg cccttaacga tgaacgactt tgcgcccatc
      421 gatccgggaa tgattccgta cgttccggat gccgcattga tcgcgccctt gcgtgtgacg
      481 aaaacttctt cgccgtagtg ctgctcgagc gcaacgtagt tgtgatgaca gttaactgcc
      541 acctcaggct tgaacgactg acgatgattg aacatcttgt tgaatacctt caacagacga
      601 gtcatcatga tctcgcggtt cttcatcgcg taaccttgcg cccacttcaa gtctttccag
      661 taagcctcaa attccggcgt accgtagatg aagtaagcga ggtcaggtgc cggcagttcg
      721 cttagtctcc acaaactttt cgctgttgag atatgacgtt ctgctaattc ctttccgatg
      781 ttgcgagaac ctgagtgaag cattaaccaa acgcgagatt ccgtgtccag gcaaacttcg
      841 atgaagtggt taccaccacc cagcgtaccc aactgcttca tcgcttttgc tttgcgatcg
      901 tgaacgcctt cgtgaagatc cttgaagtcg ttccaaccgt cccagtacga agactcgtca
      961 actgattcct tgtacgcatc aaatccagtt gggattgctt cttcgatctt caagcgaagc
     1021 tccttcaatt ttccgtcgag gatgccgctc ttgaatggtg tctttaccgc catcattcca
     1081 cagccgatat caacaccgac cgtcgccgga attactgctt cctttgtcgc cacgactgaa
     1141 ccgaccatgc ttccctttcc caggtgagca tcaggcatca gtgcgacgtg tttgaacaaa
     1201 caaggcagac gcgaaacgtt gcgtagcatt gactgttcct cgattgaaaa ctcgtggttc
     1261 gcccatgaaa gaatctcctt ctgagcgccc ccgagttgta gtttttcgta aggcacgtgc
     1321 gtacctcctt tctaaggata ggtttcgatc tcagatctca aatttcattg cgaccagaca
     1381 atttgagatc tgagatctga aatttgagat cactttggtg cgccaggtga gattcgaact
     1441 cacatcactc tgattaagag tcagaggcct tagccaatta ggtaactgac gcttagaaag
     1501 tcagtaccac aacgcggtag cgtgtggctg gtctaacgga tgcttaccgt cgcctgatta
     1561 aagtcgagtg catgaatggt tt
//
LOCUS       DATCGC010001243         1081 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_350434, whole genome shotgun sequence.
ACCESSION   DATCGC010001243 DATCGC010000000
VERSION     DATCGC010001243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1081)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1081)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1081
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_350434"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1081)
                     /locus_tag="VIJ87_12040"
     CDS             complement(<1..>1081)
                     /locus_tag="VIJ87_12040"
                     /inference="COORDINATES: protein motif:HMM:NF024771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enolase C-terminal domain-like protein"
                     /protein_id="HEY5445168.1"
                     /translation="RPTTVTVPLEAPLRHANGCHWGRFVRTIVEVETDDGLIGLGEMG
                     GGGESAEAAIRVMKSYLVGHDPARLEEMRFLIANPTASLYNNRTQILAALEFACLDIL
                     GQRWGVPVSEILGGRLREKIPFASYLFFRYANPQHDVDEVRTVEQLVNHARVLKERYG
                     FTSHKVKGGVFPPEYELECYRALATELTGDRFRFDPNAVWSTETAIWFGQQIEDLNND
                     YLEDPVYGMNGMRRVREKVRMPLATNTVVVGFEQLAANVLDTAVDVILLDTTFWGGIR
                     QCVKAANVCETFQLGVAMHSSGELGIQLATMLHLAAVIPNLSFAGDAHYHQLTDDVIE
                     GGKFEYKDGHIAVPTSPGLGVRLDYD"
BASE COUNT          271 a          292 c          265 g          253 t
ORIGIN      
        1 tgtcgtaatc gagtcggact cccaaacccg gcgaagttgg taccgcgata tgaccatctt
       61 tgtattcgaa tttgccgccc tcgattacgt cgtccgttaa ttggtgataa tgtgcgtcac
      121 cggcgaaact gaggttggga atcactgccg caaggtgaag catggtcgct aactgaattc
      181 cgagttcacc tgaagagtgc atcgcaacgc cgagttgaaa agtctcacaa acatttgcgg
      241 ctttaacgca ctgtcgaata ccaccccaaa aagttgtgtc gaggagaatt acgtcgacag
      301 ccgtatcgag cacgttagct gccagttgct cgaacccaac gacgaccgtg ttggtcgcca
      361 gcggcattcg aaccttttcg cgaacgcgcc gcatgccgtt cattccgtaa accggatcct
      421 cgagatagtc gttgtttaag tcttcgatct gttgaccaaa ccagatcgcc gtttctgttg
      481 accaaacagc attaggatca aaacgaaacc gatcgccagt taactcggtt gccaacgcgc
      541 gataacactc gagttcgtac tcaggtggaa agaccccgcc ctttactttg tgtgacgtaa
      601 atccgtaacg ctcctttagt acacgggcat ggtttaccag ttgttcgacg gttctaactt
      661 catcgacatc atgctgcgga tttgcgtaac gaaagaaaag gtaggacgca aaaggaatct
      721 tctctcgtag tcgaccgccg agaatttctg aaacgggcac accccaacgt tgccctaaga
      781 tatcgagaca agcaaactca agcgctgcca ggatctgagt tcgattgtta tagagcgaag
      841 cggtcgggtt agcgattaga aatcgcatct cttcaagtcg tgccggatcg tggccgacga
      901 gatagctctt cattacgcgg atagctgctt cggccgattc accgccgcca cccatctctc
      961 ctagtccgat caatccatcg tcagtttcaa cttcaacaat cgtgcggaca aatcgacccc
     1021 aatgacagcc gttcgcgtga cgcaaaggcg cctctaaagg aacggtcacg gttgtgggac
     1081 g
//
LOCUS       DATCGC010001244         1082 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_415297, whole genome shotgun sequence.
ACCESSION   DATCGC010001244 DATCGC010000000
VERSION     DATCGC010001244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1082
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_415297"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..786
                     /locus_tag="VIJ87_12045"
     CDS             <1..786
                     /locus_tag="VIJ87_12045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445169.1"
                     /translation="RHGIKPMFVLFDSCWDPNPQLGKQRAPRPGVHNSGWMQSPGAKA
                     LQDPADYPRLEAYVKGVVGAFAHDRRILAWDIWNEPDNTSDRDPKNKVELVLTLLPKA
                     FAWAREAGAEQPLTSGVWTGDWTDEKLSAMQRVQLDLSDLISFHNYDGPTELEKRINW
                     LLRFNRPLLCTEYMARGNGSFFIGSLPVFKKYGVAAINWGLVQGKTQTHFPWDSWQRP
                     YVDREPAIWFHEVFKTDGSPYIPEEVAYIKRMTGRGKARAVKE"
     gene            complement(789..>1082)
                     /locus_tag="VIJ87_12050"
     CDS             complement(789..>1082)
                     /locus_tag="VIJ87_12050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445170.1"
                     /translation="RLGTPSMKTGLDVIEAMREVMKGTNFKVEFIGEVLTETLSATQF
                     GVTTVKVTSPVGEYSQRIYVTVKGDYALEMFFTYLNDSDLPSFAGIMQSVKFK"
BASE COUNT          259 a          265 c          289 g          269 t
ORIGIN      
        1 aggcatggta tcaagccaat gtttgttctc ttcgattctt gctgggatcc aaacccacag
       61 ctcggtaaac aacgtgcgcc gcgacccggg gtacacaact cgggttggat gcagagccca
      121 ggtgccaagg cgttgcaaga cccagctgac tatcctcgac ttgaagcgta cgtgaaaggt
      181 gttgtcggtg cgtttgctca cgaccgtcgc atacttgcgt gggacatttg gaatgaaccg
      241 gataatacaa gcgacagaga tccgaaaaac aaagtcgagt tagttctcac cctgttgccg
      301 aaagcatttg catgggcgcg tgaggctggt gctgaacagc ctctaacgag tggtgtgtgg
      361 accggggatt ggactgacga gaagctttcg gcaatgcagc gtgtacagct cgatttgtcg
      421 gacctgattt cgttccacaa ttacgacggt cccactgaat tggagaagcg catcaattgg
      481 cttctgcgtt ttaaccgtcc gctgctctgc acggaataca tggctcgtgg caacggaagc
      541 tttttcatcg ggtctcttcc tgtcttcaag aaatatggtg tggcagcaat caactggggg
      601 ttggtgcagg gcaagacgca aactcatttt ccctgggact cgtggcagcg accttacgtc
      661 gatcgtgaac cagcaatctg gtttcatgaa gttttcaaga cagacggcag tccgtatatc
      721 cctgaggaag ttgcttacat caagcgtatg acgggaagag ggaaggcgcg cgcggttaag
      781 gagtaagctt acttgaattt gactgactgc atgattcccg caaacgacgg caagtctgaa
      841 tcgttgaggt acgtgaaaaa catctcaaga gcgtaatcgc ctttgaccgt tacgtagatt
      901 ctctgactgt attccccaac aggtgaagtc accttcacag tggtaactcc gaactgtgtt
      961 gcgctcaaag tctccgtaag aacctctcca ataaattcaa ccttgaagtt tgtgcctttc
     1021 atcacttctc gcattgcctc aattacatcc aggccggttt tcatcgatgg cgtgccgagg
     1081 cg
//
LOCUS       DATCGC010001245         2152 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_116505, whole genome shotgun sequence.
ACCESSION   DATCGC010001245 DATCGC010000000
VERSION     DATCGC010001245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2152)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2152
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116505"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..758)
                     /locus_tag="VIJ87_12055"
     CDS             complement(<1..758)
                     /locus_tag="VIJ87_12055"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY5445171.1"
                     /translation="MGIASINPATGETLKTFEALTNDQIETKLQLAADTFKTHRHTSF
                     ERRTEMMSKAADILESEKRQLGTIMTTEMGKPLKAAIAEAEKCALVCRYYAENAQKHL
                     ADQLVETNAAKSYVRFQPLGPVLAVMPWNFPFWQVFRFAAPALMAGNVGLLKHASNVP
                     QCALAIEDVFRRAGFPEGTFQTLLIGSEAVEAILIDTRVVAATLTGSEPAGRSVAAAS
                     GKQIKKTVLELGGSDPFIVMPTANLDKAVETAVKA"
     gene            934..>2152
                     /locus_tag="VIJ87_12060"
     CDS             934..>2152
                     /locus_tag="VIJ87_12060"
                     /inference="COORDINATES: protein motif:HMM:NF026066.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HEY5445172.1"
                     /translation="MPKQEKPRLDKFAIASALQEIASLMEIKGGKYRFKAKAYSAGAR
                     AIQSVTNLDQLVAQDRLTSLPRIGDALASQIKQLYLTGESSVLQELKSEFPVGTAELS
                     AVPGLSIAKVKQLQDELGIKSVEDLKVAAEQGRLKDLKGFGAKTEQRLLESIESEKTK
                     PKRRLHINHAWNTGERLFEFVNGLDGVIEASLTGSLRRREETIDRVDVLASTKKPADL
                     LRQFLRFPMIISSDINGATCNAELVDGASVSLTAVAPDDFATMLLATTGSDAHVQKLT
                     QYASDKKISFAVPDGKGSKRAPRSEEEIYGRLRMQHVPPELREDQGEIEAALAGKLPE
                     DLLELSDIKGMIHCHTTYSDGKHSLEQMVTAAESMGMKYITITDHSPTAFYANGVTED
                     RLKRQWDEIDELQE"
BASE COUNT          532 a          516 c          569 g          535 t
ORIGIN      
        1 gccttcactg cggtctcaac ggccttgtcc agattggccg taggcatcac gataaaagga
       61 tcgctgccgc cgagttcgag aacagtcttc ttgatctgtt tacctgacgc ggctgccaca
      121 cttctgcccg ccggttcgct gcccgtcaac gttgctgcta cgactcttgt gtcgatgagg
      181 attgcttcga ctgcttccga tccaatgagc agagtttgaa aggtaccttc gggaaaacca
      241 gcgcgtcgaa aaacgtcttc gatggcgagc gcacattggg gaacgtttga cgcatgtttg
      301 agcaagccaa catttccggc catcaatgcg ggagccgcga agcgaaacac ctgccagaac
      361 ggaaaattcc acggcatcac agctagtacc ggaccgagtg gttggaagcg aacgtagctc
      421 ttcgctgcgt tagtttcgac tagttgatca gcaagatgtt tctgggcgtt ctcagcgtag
      481 taacgacaaa ccagtgcaca cttctcagct tcagcaatag cggctttgag tggcttgccc
      541 atctcggttg tcatgatcgt tcccagctga cgcttttcac tctcaagaat gtcagctgcc
      601 ttggacatca tttcagtgcg tcgttcgaat gacgtgtgac ggtgggtctt gaatgtgtct
      661 gctgccagtt gaagcttggt ttctatctga tcgttggtca gcgcctcaaa agttttcaga
      721 gtctcgcctg tcgctggatt gatcgatgct attcccatgt cttctatagt tactcttcag
      781 tagtttctac gcaaacaatg aactgggtgt ccgatatgct tttttgtcgt tcagttagcc
      841 agagcgccca gtgctaatcg cagctaaagc atatcggaca cctgttcact gtttgcccag
      901 gtttactagt aaaggttaac ttaatcctta acgatgccga aacaagagaa accacgactc
      961 gacaaatttg cgatcgcttc cgcgttgcag gaaattgcat cgctgatgga gatcaagggt
     1021 ggaaagtacc ggttcaaagc taaggcctac agtgctggtg cgcgtgctat tcaaagcgtc
     1081 acaaacctcg atcagttagt cgcgcaggat cgattgacat cgcttccgcg aatcggagat
     1141 gcgctcgctt cacagatcaa acagctatat ctaactggtg agtcatctgt tctgcaggaa
     1201 ctcaaaagtg agtttccagt tggtactgct gaattgagtg ctgtgccggg attgagtatt
     1261 gccaaggtta aacagctaca ggatgaattg gggatcaagt ccgtcgaaga cttgaaggtg
     1321 gcggccgagc agggacgact taaagacttg aaaggcttcg gcgccaagac cgagcaacgt
     1381 ttacttgagt caattgagag cgagaaaact aaaccaaaac gacgactgca cattaatcat
     1441 gcgtggaata ccggcgaacg actctttgaa tttgtgaacg gtttggatgg tgttattgaa
     1501 gccagcttga ctggttcgtt gcgtcgtcga gaagagacga ttgatcgtgt cgatgttctc
     1561 gccagcacaa agaaacctgc ggatttgtta agacagtttc ttcgttttcc catgatcatt
     1621 tcgagtgaca tcaacggtgc tacttgcaat gcagaacttg tcgacggtgc gtcggtatcg
     1681 ttgacggctg ttgcgcctga cgattttgca acgatgttgc tggcgacaac cggatcggac
     1741 gctcacgttc agaaactgac ccagtatgct tctgacaaaa agatcagttt cgctgtcccc
     1801 gatggcaaag gctcaaaacg tgcgcctcgt agcgaagaag agatctacgg tcgcctacga
     1861 atgcaacacg tgccgccaga gttgcgtgaa gatcagggcg aaatagaggc tgcgttggct
     1921 ggtaagctac ctgaagatct tctggaactg tcagacatca aaggcatgat tcattgccac
     1981 accacttact cggacggcaa acatagcctg gagcaaatgg tgacagccgc tgagtcgatg
     2041 ggaatgaagt acatcacgat cacggaccac tcgccaacag cgttttatgc gaatggcgtc
     2101 actgaggatc gtttgaaacg acagtgggac gagattgacg agttacagga ac
//
LOCUS       DATCGC010001246         1039 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_52074, whole genome shotgun sequence.
ACCESSION   DATCGC010001246 DATCGC010000000
VERSION     DATCGC010001246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1039)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1039)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1039
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52074"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(250..789)
                     /locus_tag="VIJ87_12065"
     CDS             complement(250..789)
                     /locus_tag="VIJ87_12065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445173.1"
                     /translation="MQQKRQLDYSRIASELFRCKRVAIVGNQGAGKTTLGKRLGDILQ
                     LDYVLLIKLPGQQQAIRERMARKERWVIDGDFGVLDLSDRIIFLEFPVTLCLWRAIKR
                     SYGHLRLWSFTSPRVFLQVPAKTVQLFRDLGVIYKTSHDSYPGADSPSWTPDDHTITL
                     TSPKQVNALLEALNSRKEI"
BASE COUNT          283 a          258 c          250 g          248 t
ORIGIN      
        1 ggacgctctt cattccagat aatgggtttt taaaccctga aaaaggaaac agcaatacgt
       61 atcttctgtc caggagaaga gtcgaacatt tccatcaagc gagtcattgt ccagttgtcg
      121 ttcctgcgtt tcaaacctgc acgtgtggac gataatactt ttgcgattcg ctgtggtcaa
      181 atacaacaag aagcaggtat cgaacgctga cagcaaccta ccggagttct cgcagcagca
      241 ctcgtactct caaatctcct ttcgagagtt gagagcctcg aggagggcgt ttacctgctt
      301 tggtgaagta agagtgatcg tatggtcatc cggtgtccag ctgggagaat ccgctccagg
      361 ataagaatca tgggaagtct tatagatgac gcccagatcc ctaaagagct gtacggtttt
      421 cgccgggacc tgtaaaaaca cccgtggcga agtgaatgac caaagccgga gatgtccata
      481 ggaacgtttt atcgcgcgcc aaagacaaag cgtcacggga aactctagga aaatgattcg
      541 atccgaaaga tcgagcacgc cgaagtcacc atcaatgacc caacgttcct tacgtgccat
      601 acgctcgcga atagcttgtt gttggcctgg aagctttatc agcaggacat agtccaactg
      661 aagtatatcg ccaagccgtt ttcctaaagt tgttttacca gcaccttgat ttcctacaat
      721 cgccacgcgc ttgcaacgaa atagttcgct ggcaatgcgg ctatagtcta gctgccgctt
      781 ttgttgcatg tgtttattcc cttactcatt gtctctatga tcgccaccgc gtggaatacc
      841 cgatacgaga acgcagcgtc acctacgaca ggtgtcgagg acgaacccca cacgcaccgc
      901 ttcatgattt tcggcaagag gtatgaacac atcagaacac cgccacatat tcttgtgcag
      961 agtaaggacg ttgaatcatg aaaagtatac cgtagtacac ggcaaccgtc ggcatggcct
     1021 atcggagaag tgagataag
//
LOCUS       DATCGC010001247         2594 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_484421, whole genome shotgun sequence.
ACCESSION   DATCGC010001247 DATCGC010000000
VERSION     DATCGC010001247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2594)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2594)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2594
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_484421"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..926
                     /locus_tag="VIJ87_12070"
     CDS             <1..926
                     /locus_tag="VIJ87_12070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445174.1"
                     /translation="PAMPPLLQALLAQSGMKLDPQGADTRGGQWIRNFGSAFRSGPQA
                     ESTTNLGQVSNSTALTMNALFGAFGSYLAASTDVALHAAKFHPQAGSALGPITPRQSA
                     DFAAGLKAATTEIYNKATTNAPDVPLIWQNKERYKVSTPAWQYVKDNQQYIRSISGMR
                     DDVLGKAAQLRRQQAQQAGGIAPQVLSDLTLIKIAQDVKAWQNPTGTLGKLHKEYNVL
                     SNQNRAVAVQYNLPQEERTRRQNIIIGRMQDNMEQQHLATKYFEQTVGDKYGKVLAPR
                     LQGRPITMKAIDEMLRESISNPTASAGASAE"
     gene            complement(930..>2594)
                     /locus_tag="VIJ87_12075"
     CDS             complement(930..>2594)
                     /locus_tag="VIJ87_12075"
                     /inference="COORDINATES: protein motif:HMM:NF012688.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase"
                     /protein_id="HEY5445175.1"
                     /translation="GFDMAWLWFKDRIRCRPAYSDTMLGHHVLYPTMPHDLGFIVKQY
                     TTHPFYKNEKDEWRHTGGIDNFWIYNGKDCALTLASNAHIIAELREQKLDKFYFEHVM
                     RLQAHLVLMTVGGVLNDMKLREHMLDQNTPGNLYDDLQHKLAAFYGACREAVNDPFYT
                     PNPNSPKQMAELYFSKLKLVGRGTSTDATNRELMRKHPRTTQAARKVLDAVDSYIEDD
                     KFYSVYASAKPDADSRMRCDYRQTGVRSAPGRLSSAQTLWGSGGNLQNIPDRAKEMFI
                     ADPDCCFIYIDGSQAEARVVGWRYNIATWIDQFERARRDGSYDCHRALASDMFNVPYN
                     EVPTFDRYPLDEVAAKRDGIAYNADMAGKPTIRYIAKRCRHGLNYRMMPDRLALTTGL
                     SLSTASEAFVKYHKLTPELKLGWQADLNRVRGERAIYNAYGRRYVQLIPVTEESTEAI
                     VAFYPQSTIGDHICRVIYKCHDDDKWPKGKARIALNTHDGLIGLARKDVAKQALRVMV
                     KHAEAPMLIGGKQLIIPAECGISVPGDDGVHRWSTIKKIKQAEIMQ"
BASE COUNT          602 a          672 c          686 g          634 t
ORIGIN      
        1 cacctgctat gccgccgctg ttgcaagcgc tgctcgcaca gagtggtatg aagctagacc
       61 cacagggagc agacacaaga ggtggtcagt ggatacgcaa cttcggtagt gcattccgtt
      121 cggggccgca ggctgagagt actactaatc taggtcaagt cagcaactct acagcgttga
      181 caatgaacgc gctgttcggt gcctttggta gctatctggc agcaagtaca gatgtagcac
      241 tacacgctgc aaagtttcac cctcaggctg gcagtgcctt ggggcctatt acacctaggc
      301 agagtgcaga cttcgctgca ggattgaagg ctgctactac ggagatatac aacaaggcca
      361 ctaccaacgc gccagatgtg ccgttgatat ggcagaacaa ggaacgctac aaagtcagca
      421 cacctgcttg gcagtatgtc aaagacaatc agcagtacat caggtcaatc tcaggcatgc
      481 gtgatgatgt acttggcaag gctgcacagt tgcgtaggca gcaagcacaa caggctggcg
      541 gtatagcgcc acaagtgttg agtgacttga cgttgattaa gattgctcaa gatgtgaagg
      601 cgtggcagaa cccgactggc acactcggca agctgcacaa ggaatacaac gtgttgagca
      661 atcagaaccg cgccgttgct gtgcagtata acctgccaca agaggaacgt actcgtaggc
      721 agaacatcat catcggtcgc atgcaggaca acatggagca acagcaccta gccaccaagt
      781 acttcgagca gactgttggt gacaagtatg gcaaggtgct ggctccacgc ttgcaaggta
      841 gaccgataac gatgaaggcg attgacgaga tgttgcgtga gagcattagc aatcctactg
      901 ctagcgcagg tgctagtgct gagtagttgc tactgcataa tctccgcttg tttgatcttc
      961 ttgatcgttg accacctatg tacgccatca tcccccggca cactaatgcc gcactcagca
     1021 gggatgatga gttgtttgcc gcctatcagc atcggtgctt cggcgtgttt gaccatcaca
     1081 cgtagtgcct gcttggctac gtccttccgc gctagaccta tcagcccatc gtgagtgttg
     1141 agcgctattc tggccttgcc cttgggccat ttgtcatcgt cgtgacactt atatatgacg
     1201 cggcagatgt ggtcgcctat agtggactgt gggtagaagg cgactatcgc ctcggtgctt
     1261 tcctcggtca ctggaattaa ttgaacgtat cgccgtccgt aggcgttata gatagcacgc
     1321 tcaccgcgta ctcggttcag atcggcttgc catcctagct tcaactcagg tgttagcttg
     1381 tggtacttga caaacgcctc acttgctgtt gatagtgaca agcctgttgt tagagctaga
     1441 cggtcaggca tcatacggta gttaagacca tgacggcacc ttttagcgat gtagcggatt
     1501 gtcggcttcc ccgccatgtc cgcattgtat gcgatgccat cacgcttcgc ggcaacttca
     1561 tccaaggggt agcggtcgaa ggtcggaact tcgttgtacg gtacattgaa catgtcactg
     1621 gcgagggcgc gatgacagtc gtagctgccg tcacgcctag ccctctcaaa ctggtcgatc
     1681 catgttgcga tgttatatcg ccagccgacg acgcgagcct ccgcttgaga gccatcaatg
     1741 tagatgaagc agcaatcggg atcagctata aacatctcct tcgcgcggtc ggggatattc
     1801 tgcagattgc cgccgctgcc ccacagtgtt tgagcgctag acagccgtcc cggcgcagaa
     1861 cgtactccgg tctgcctgta gtcgcagcgc atcctactat cggcgtccgg cttggctgat
     1921 gcatatacac tgtagaactt atcgtcctcg atgtagctat caactgcatc gaggacttta
     1981 cgtgcagctt gcgttgtgcg tggatgctta cgcatcaact cacgattggt agcatcggtg
     2041 ctagtgcctc tgcctactag cttcagctta ctgaaataca actctgccat ctgcttcggg
     2101 gagtttgggt tcggtgtata gaagggatcg ttcacagctt cacgacaagc tccgtagaat
     2161 gcagctagct tgtgctgcaa atcgtcatac aaattccccg gtgtgttttg gtcgagcatg
     2221 tgttcgcgta gcttcatatc attcagcaca ccaccaactg tcatcaacac taagtgagcc
     2281 tgtagacgca tcacatgctc gaagtagaac ttgtcgagct tttgttcacg tagctccgcg
     2341 atgatgtgag cattcgacgc aagcgtgagt gcacagtctt taccgttata tatccagaag
     2401 ttgtcaatac cacctgtatg tcgccactcg tctttctcgt tcttatagaa cgggtgtgtg
     2461 gtgtactgtt taacgatgaa gccaagatcg tgtggcattg tgggatatag aacatgatga
     2521 ccaagcatcg tgtcgctgta tgcgggcctg cagcgtatcc gatccttaaa ccataaccac
     2581 gccatatcga accc
//
LOCUS       DATCGC010001248         1416 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_85904, whole genome shotgun sequence.
ACCESSION   DATCGC010001248 DATCGC010000000
VERSION     DATCGC010001248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1416)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1416)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1416
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85904"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..516
                     /locus_tag="VIJ87_12080"
     CDS             <1..516
                     /locus_tag="VIJ87_12080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445176.1"
                     /translation="SAPLVVKKDPNSAGSEADIAAQFEMLQDLRRDLDSASDMVNQIE
                     SIRAQLYQLTNTAGASDATVKSAADDLDKKLIDVEDDLIQRRLTGQGQDTVRWPPKLL
                     SKLGYLNGGLSSSDFPPTNQHREVHAMFKQQLATIKQRFDAVMNQDVGAFNKLLKDRN
                     IGNVITRSSSP"
     gene            693..>1416
                     /gene="glgP"
                     /locus_tag="VIJ87_12085"
     CDS             693..>1416
                     /gene="glgP"
                     /locus_tag="VIJ87_12085"
                     /inference="COORDINATES: protein motif:HMM:TIGR02094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucan family phosphorylase"
                     /protein_id="HEY5445177.1"
                     /translation="MIETTEIENRLEGKSDLPSPLLPLEQLSWNYWWSWAPDGLSIFR
                     DLDPQTWEECEHNPRQLFVKTSEYRLAQVATDPHYLQRVAAIAEKFESYIERPQLWWS
                     PDGNSPISTERPVAYFCAEYGVHNSLPLYSGGLGILAGDHLKSASDINLPLVAIGLLY
                     RYGYFRQRLRKDGWQEEYYGETHPTELPIRLVQDDHGKPVMIEVMIRGRRVFAQVWRA
                     DVGRVPLYLLDTNIPDNAETDRW"
BASE COUNT          365 a          353 c          381 g          317 t
ORIGIN      
        1 agcgcgccgc tggttgttaa gaaggatcca aactctgcgg gctctgaggc tgacatcgca
       61 gctcaatttg aaatgctgca ggacctaagg cgagatctgg attctgcgtc ggacatggtt
      121 aatcagatcg agtcgatccg ggcgcagctt tatcagctaa cgaatacggc cggcgcctca
      181 gacgcgacag tgaaatccgc cgccgacgat ctcgacaaga agctgattga tgtcgaagac
      241 gacctgatcc aaagacgact aacagggcag ggtcaagaca cagttagatg gccacccaag
      301 ctcttaagca agttgggata tctcaacggt ggcttatcga gttctgattt tccacccacg
      361 aaccaacatc gagaagtgca tgcgatgttc aagcaacaac ttgcgactat caaacagcga
      421 tttgatgcag tgatgaatca ggatgtcggc gcgttcaata aactgttgaa agatcgaaat
      481 ataggaaatg tgattacgcg atcgtcgagt ccttagccgg atcgcagtgg gtcgatagtc
      541 agtaccgtaa cgcggtagcg tcgggtcctg cgatgatcgg gcctcacaag tagcaattac
      601 ccgacgctac cgcgttacga tactgactat cgacccactg cgttgaactg cacgggacga
      661 caagctgaag ttaatcgaac ataaaaaccc gaatgattga aactactgag attgaaaatc
      721 gtcttgaggg caagagcgac ttgccctcac ctcttttacc cttagaacaa ttatcatgga
      781 attactggtg gagctgggcg cctgacggcc tgagtatctt tcgagatctg gatccacaga
      841 cgtgggaaga gtgtgaacac aacccgcgac agctgttcgt gaaaacctca gagtaccgtc
      901 tcgcacaagt ggctactgac ccgcactact tgcaacgcgt cgctgccatc gcagaaaaat
      961 tcgaatcgta tattgaacgt ccgcaactct ggtggtctcc tgacggcaac tcgccaatct
     1021 caacagagcg gccggtcgcc tatttttgcg cggagtatgg agtacacaat tcgctgccgc
     1081 tctactccgg cggtttaggc attctcgcgg gcgatcatct gaagtcggcc agcgacatta
     1141 acttgcctct cgtcgccatc ggtctgcttt atcgatacgg ctattttcgt cagcggctga
     1201 ggaaggatgg ttggcaggaa gagtattacg gggagactca cccgacagaa ttgcctatca
     1261 gattggtcca ggatgatcat ggcaaaccgg tgatgatcga agtaatgatc cgcggacgtc
     1321 gcgtctttgc acaggtgtgg agagcggacg tgggacgtgt cccgctctat ttattagata
     1381 caaacattcc tgataacgct gagactgaca ggtggg
//
LOCUS       DATCGC010001249         2785 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_319456, whole genome shotgun sequence.
ACCESSION   DATCGC010001249 DATCGC010000000
VERSION     DATCGC010001249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2785)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2785)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2785
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_319456"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(58..1950)
                     /locus_tag="VIJ87_12090"
     CDS             complement(58..1950)
                     /locus_tag="VIJ87_12090"
                     /EC_number="1.5.1.20"
                     /EC_number="2.1.1.10"
                     /inference="COORDINATES: protein motif:HMM:NF006396.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional homocysteine
                     S-methyltransferase/methylenetetrahydrofolate reductase"
                     /protein_id="HEY5445178.1"
                     /translation="MQPFKDLLETDRIHVVDGAMGTMLYAKGVYINRCYDELNLSNPD
                     LVREIHTEYIKAGADIIETNTFGATAHKLQQYGLEANLHEINVIAAKVAREAAADRAY
                     VAGAIGPLGVRIEPFGPTSFDEAKDLFKPQVTALLEGGVDLFCLETFSDVPEMLQAIR
                     AVRELCDLPIIAQMTIMTDGNTVFGTTPESFTESLDEAGADVIGLNCGVGPAIILNAL
                     EKMRAVTKKKLSAQPNAGLPRDVQGRQFYMCSPEYMSKFAKRFIQSGAKFIGGCCGTT
                     PAHIKLISDAVRAASPRAQRTAFTPGTPAHVDEITPPDIRVVPPEQRSNWGRKIAQGE
                     FVTSVEVLPPKGVDSKKTLESIRLLKKAGVDGVNIPDGARAQSRMSALATAVLVEQQI
                     GIESVLHYCCRDRNLLGMMSDLLGAAALGLRNILVITGDPPKMGPYPDATAVFDIDSI
                     GLTNMVNKLNHGLDLGNNPIGEPTAFCIGVGVNPGAINLDEEIKRFEWKVEAGAQYAI
                     TQPVFDTDQLRDFLKRIEHVRIPVIAGIWPLVSYRNAEFLHNEVPGVRVTPSIMDRMR
                     QASNVSKEAGRDEGLKIARESLIEVRDVIQGVQVSAPFGNVKYALEVFGGLEGFEDQT
                     LTAPQS"
     regulatory      complement(2111..2186)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00521"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="SAM riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00521"
BASE COUNT          645 a          728 c          694 g          718 t
ORIGIN      
        1 cagatttact gctagcgctt caagcgatac tgaagaatta agaagaatca ctacatctta
       61 gctttgaggc gcggtcaatg tttggtcttc gaaaccctcg agtccaccaa agacctccaa
      121 agcgtactta acatttccaa acggcgccga cacttgcacg ccctggatta catcgcgaac
      181 ttcgatcagt gactcacgcg cgatcttcaa tccttcatca cgcccagctt ctttgctgac
      241 atttgatgcc tgacgcatcc ggtccatgat cgacggcgtc actcgaacac caggcacttc
      301 attgtgcaga aactctgcgt tgcgatagga gaccagcggc cagatccccg ctatcacagg
      361 gatgcgaacg tgttcgatgc gcttcagaaa gtcacgaagc tgatcagtat caaagaccgg
      421 ctgcgtgatc gcatactgag ccccggcttc taccttccat tcgaatcgct ttatctcttc
      481 gtcgagattg atcgcgccgg gattaactcc aacaccgata caaaatgccg tcggttcgcc
      541 aatcggattg tttcccagat ccagaccatg gttgagctta ttcaccatgt ttgttaatcc
      601 gatcgagtcg atatcaaaca cggcagtagc atccggatat ggccccatct ttggcggatc
      661 accagtgatg accaggatgt ttcgcagacc gagtgcagcg gcgccaagca ggtccgacat
      721 cattccgagc agattccgat cgcgacagca gtagtgcaac actgactcga tgccgatttg
      781 ctgctcgacg aggaccgcgg tagcgagtgc actcatacga gactgtgcac gcgcgccatc
      841 tggaatgttc actccatcga ccccagcctt cttcagcaaa cggatcgact caagcgtttt
      901 cttcgagtca acacctttcg gcggaagaac ctcgactgaa gttacaaact caccctgggc
      961 gattttgcgt ccccagttcg aacgctgttc gggtggcaca actcgaatat caggaggtgt
     1021 gatctcgtcg acgtgcgccg gtgtccccgg ggtaaaagca gttcgttgag cacgtggcga
     1081 agccgctctc actgcatccg agatcaattt gatgtgtgcg ggtgtggtgc cacaacaacc
     1141 gccaatgaac ttagcgcctg attgaatgaa tctcttggca aactttgaca tgtattccgg
     1201 ggaacacatg tagaactgtc gaccttgaac gtctcgcggt agcccggcgt tgggttgtgc
     1261 agacagtttc ttcttcgtca ctgcacgcat cttctcgagt gcgttaagaa tgattgccgg
     1321 tccaacgccg cagttaagac caatgacgtc tgccccggct tcatcgaggc tttctgtaaa
     1381 gctttcgggc gtcgtgccga agacggtgtt gccgtcggtc atgattgtca tctgcgcaat
     1441 aattggcagg tcgcagagtt cacgtacggc gcgaatagcc tgaagcattt cgggaacgtc
     1501 agaaaacgtc tcgagacaaa acagatcaac tccgccttcg agtaacgcgg tgacctgggg
     1561 tttgaaaaga tcctttgctt catcgaatga cgttgggccg aagggttcaa ttcggacacc
     1621 gagcggaccg attgcgcccg ccacgtaagc acgatcggca gcagcttcac gtgcaacttt
     1681 tgctgcaatg acgttgatct cgtgaagatt tgcttcgaga ccgtactgct gcagtttgtg
     1741 tgcggttgcg ccgaaggtgt tggtctcgat gatgtcggcg ccagctttga tgtattcggt
     1801 gtgaatctcc cgaacgaggt ctggattact gagattcagt tcgtcgtaac agcgattgat
     1861 gtaaacacct ttggcgtaaa gcatcgttcc catcgcgccg tcgacgacgt gaatgcgatc
     1921 agtttctagg aggtctttaa agggttgcat aagattgccg aattgatgtt cgatatgctt
     1981 tagcttgtcg gcgtttactc tagagcgcct tcataggaat caaagcgaca agctgaagca
     2041 tatcggacaa taaaaatgtc ccgcgctaaa caacgcggga cttcaagttg gtttgaagtt
     2101 tttcgggttc gcttatggtt tcccgagctg tttagctggt tgttttacgt ggccgcaagt
     2161 cgccttaact caccacgttt gtcagttcgc ttatacgctt ggcgcggaga cgctgtcaag
     2221 caaggggctt tcgacatcgg tagccttcag tagctactga attcgccctc agcctcgatg
     2281 taactactga ggggttatat tccttatcga acttcaatgt gaacttttac tgtctaacgg
     2341 tcgttgtttg accttcgcgc gcagcggcca gcagaagttg aaacgatctg tcttgttttg
     2401 cgtgtcaggc tgacaactta agccagatag accgactggc gaactgaatg agtacgttgc
     2461 tttctactca attactcaat gaaaactcaa aaaatgggca accgaaaagt attctggtcc
     2521 atcagagtcg cggttccatt agagcatgtg tagcccccaa attgagtttg cccctgtaga
     2581 accttgttcg tctgttctat ggttatcaac atggagaaat tagttaatga agttgccccg
     2641 caatatccct gtatttcgct cactcaaatt cgcacccttt gccgtcattt cagttttcct
     2701 gttcacaaac atcactggaa ttctgtttag ccatgcatta gcgccgctcg caaaagcgag
     2761 ttcgcccgat gccatcgtca ttccg
//
LOCUS       DATCGC010001250         2110 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_484449, whole genome shotgun sequence.
ACCESSION   DATCGC010001250 DATCGC010000000
VERSION     DATCGC010001250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2110
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_484449"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            46..>2110
                     /locus_tag="VIJ87_12095"
     CDS             46..>2110
                     /locus_tag="VIJ87_12095"
                     /inference="COORDINATES: protein motif:HMM:TIGR03607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3376 domain-containing protein"
                     /protein_id="HEY5445179.1"
                     /translation="MALSDIDTLLAKLVGYQSNDDWKSTSADYYRFYHDYRQPTGIPS
                     IKFPERAFGDGGYLDNKPFTYATEMVMNRTASVPVDRKLIFIEPSPEHPEDDVEQIGK
                     PDAIANVMSALLTLPRCETIREDLKRISDRNRLIDRVNAVTSGVDRDENVVREASTEL
                     FGDAATMWNQLGALITPPSSDKLWASYELSDEQHGQLDLTDCIKRKGRAYAAYLRLRI
                     SAVTDEVAQLITRVAGFDETSEYSIIVRSMVRAWRIQKYIEYRKTAEDTRDTVNKFLF
                     EFDLSYPIRRVNYLRNKVDGLTRFESDLTTVIESEAKKFDLNLKKIQDDEKLKDGFCH
                     QVQDHKADLNNLYIELRRSARSLRARHSAEKAKEAGTSVKVSPLHEQVGELMQQISSV
                     VAKETDKQAEGKMSVLDYFLGKRETGIDKKLERSYKAATPEDLCVARAETFLEAHGEI
                     RDLIDSIARELSSRVTTIKKESEQKISDLFTATSTKQLDEDPQLDTVKWIAKYCVGHF
                     YREYEDYDLLTYPILYDTDVGEADVIDVIRVSPEDAKQLIDERSTGSRKLAGTALGHF
                     GAFLQGSWRENDILWGRLDGAERIITALLPNHPLRQKLIGRAHATIICEALKTLGQDQ
                     TNKLLAESCMRTAKGKPDPNLLNQFIENLFQYSADDNDLSQQLQTLINRRSLSDYYEA
                     NFPDQS"
BASE COUNT          602 a          533 c          505 g          470 t
ORIGIN      
        1 tacgctgcac ggtgcacttc ttcgtttccg tttgcgttcg aaccgatggc cctcagtgac
       61 atcgatacgc tactggccaa actcgtcggt tatcagagca acgacgactg gaaatcaacc
      121 agcgcggact attaccgttt ctaccacgac tatcgacaac caaccggcat cccgtcgatc
      181 aagtttcccg agcgtgcttt tggtgacgga ggatatctcg ataacaaacc cttcacttac
      241 gcgacggaaa tggtgatgaa tcggactgcc agtgttcccg tcgatcgtaa attgatcttt
      301 atcgaacctt caccagaaca ccctgaggat gatgtcgagc aaatcggcaa acctgatgcg
      361 attgcaaatg tgatgtcggc attgctgact ctgccacgct gcgaaacaat tcgtgaagat
      421 ctgaaaagga tcagtgatag gaaccggtta atcgatcgtg tgaatgccgt aacaagtggc
      481 gtcgatcgcg acgaaaacgt tgttcgcgaa gcttcgacag aactcttcgg ggatgccgca
      541 accatgtgga atcagttggg agcactcatt actccgccat cttccgacaa gctgtgggcc
      601 tcttatgaat tatccgacga acagcacggt cagctcgacc tcaccgactg tatcaaacga
      661 aaaggtcgtg cctacgcagc gtacttacgt ttgcgaattt cagcggtcac tgacgaggtc
      721 gctcagctaa tcacgagagt cgcgggcttc gatgaaacgt cagagtattc gatcattgtg
      781 cgtagcatgg tccgtgcgtg gcgcatacaa aagtacatcg agtatcggaa gacagcggaa
      841 gataccagag acacggtaaa taagttcctg tttgagtttg atctctcgta cccgatacgt
      901 cgggtcaatt acctgcgtaa taaagtcgat ggactaaccc gttttgaaag tgacctcacc
      961 acggtgatcg aaagcgaagc caagaaattc gatctgaacc ttaagaagat acaagatgat
     1021 gaaaaactta aggacggttt ctgccatcag gtacaggacc ataaagcgga cttgaacaac
     1081 ctctatatcg aacttcgccg ctcggcaaga tctctgcgcg caagacattc agctgaaaaa
     1141 gcaaaagagg caggaacgtc agtaaaagta agtccgctgc atgaacaagt cggcgagttg
     1201 atgcagcaga tttcaagcgt agtcgccaaa gaaactgaca agcaggccga aggtaaaatg
     1261 tcggtactcg actatttcct cggcaaacgc gagacgggta tcgataagaa acttgaacgt
     1321 tcttacaagg cagcgacgcc cgaagatctt tgcgtcgcgc gagcagaaac atttctcgaa
     1381 gcccatggag agatcaggga tctgattgat agcattgcca gggagttatc ttcgcgagta
     1441 acaaccatca agaaagagtc agaacagaag atcagcgatc tattcacagc caccagcact
     1501 aaacaacttg atgaagatcc tcagctggac accgttaaat ggattgctaa gtattgtgtc
     1561 ggccacttct atcgtgagta cgaagactac gatcttctaa cctacccgat tctctatgat
     1621 acggacgttg gcgaagccga tgtcatcgac gtgatcaggg ttagtcctga agacgccaaa
     1681 caacttattg acgaacgttc aactggatcg cgaaaacttg ccggcacagc gttgggccat
     1741 tttggtgctt tcttacaggg aagctggcgg gaaaacgata ttctttgggg ccgactcgac
     1801 ggtgccgaaa gaatcatcac ggcacttctt cctaaccatc cgctgcgcca gaagctcatt
     1861 ggacgcgctc acgccaccat aatttgcgaa gctctcaaaa ctctcggcca ggatcaaacc
     1921 aataaactac tggccgagtc ttgtatgcgt acggcgaaag gtaaaccgga cccaaatctt
     1981 ctcaatcaat tcatagaaaa tctctttcaa tactcagccg acgataatga cctctctcag
     2041 cagctgcaaa cactcatcaa tcgtcgaagc ctaagtgact actacgaggc aaactttccc
     2101 gatcaaagcc
//
LOCUS       DATCGC010001251         1455 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_85926, whole genome shotgun sequence.
ACCESSION   DATCGC010001251 DATCGC010000000
VERSION     DATCGC010001251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1455)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1455)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1455
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85926"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..696)
                     /locus_tag="VIJ87_12100"
     CDS             complement(<1..696)
                     /locus_tag="VIJ87_12100"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY5445180.1"
                     /translation="MKRKSLVALAALLLVACLGALWFAGNSLSSPAPKVIGALPDDLN
                     GSSIQFQSYSGETIHGWYIPGRRGAGAVALMHVVRSNRLSMLDRARFLSQAGYSVLLF
                     DFQAHGESTGKHITFGYLESEDAAAAIAYLKQVAPGERIGVIGVSMGGAAATLAAPPL
                     SINALVLEMVYPTIKEAVDDRLTMRLGGWARVLTPLLLLQSRAQLGFSSNNLRPIDHV
                     GQLTFPKLFIAGAN"
     gene            complement(696..1274)
                     /locus_tag="VIJ87_12105"
     CDS             complement(696..1274)
                     /locus_tag="VIJ87_12105"
                     /inference="COORDINATES: protein motif:HMM:NF015142.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004721 - phosphoprotein phosphatase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein phosphatase"
                     /protein_id="HEY5445181.1"
                     /translation="MSNRTKFFAALFIGLLLTANGLGQDEPKYSELPNFHQVNSNLYR
                     GAQPEKNGLQRLKELGIKTVINLRDTGDLTKTEEKTAAAMGIQYFNVPLPNFNRPDDA
                     TVARILELINSSTNQPVFVHCKRGSDRTGTIMAVYRISHDGWTGEKATAEAKRFGLGF
                     WQLGMKDYIHDYYTRHSHNDQTTTKQTPQLLF"
BASE COUNT          343 a          340 c          402 g          370 t
ORIGIN      
        1 gtttgctccc gcgatgaaga gttttgggaa tgttagttgg ccaacatgat cgataggacg
       61 aaggttatta gaactgaaac caagctgtgc acgactttgt agaagcagca ggggtgtcaa
      121 aacgcgagcc caaccaccga gccgcatcgt gagacgatca tcgacggctt ccttgatagt
      181 tgggtagacc atttccagca cgagggcatt tatgctcaat ggtggtgcag cgagagttgc
      241 agctgctcca cccatcgaga cgccaatcac tccgattctt tctccgggag ctacttgttt
      301 gaggtatgca atcgctgcgg cggcgtcctc gctttcgaga tagccgaagg tgatgtgctt
      361 gccggtactt tctccatggg cttgaaaatc aaagagcaaa accgaatatc cggcttgcga
      421 taaaaacctc gcacgatcga gcatcgaaag acggttcgaa cgaacgacgt gcatcaatgc
      481 cacggcgccg gcgcctcggc ggccaggaat gtaccagccg tgaattgtct cgccggagta
      541 actttgaaac tggatagaac ttccatttaa gtcgtcgggt agagcgccga taacttttgg
      601 cgccggagag gaaagtgaat ttcccgcaaa ccaaagtgct ccgagacacg caacgagtag
      661 aagcgctgca agtgcgacga gagatttgcg tttcattaga ataggagttg tggcgtttgt
      721 ttcgtagtgg tttggtcgtt gtgagaatgt cgagtgtagt aatcgtggat gtaatctttc
      781 attccgagtt gccagaatcc gagtccaaat cgttttgctt ccgccgtggc tttttcgccg
      841 gtccagccgt cgtgagagat tcgataaacg gccatgattg ttccggtgcg atcagatccg
      901 cgtttgcagt gaacaaagac gggttggttt gttgacgaat taatcaactc gagtatgcgg
      961 gcgacagtag cgtcatcagg gcggttgaag ttcggaagcg ggacattgaa gtattgaata
     1021 cccattgctg ctgcggtctt ctcttcagtc ttagtaaggt cacccgtgtc gcgcagattg
     1081 atgaccgttt tgatgccgag ttccttgaga cgctgaagac catttttctc cggttgagcc
     1141 ccacggtaaa gattggaatt tacttgatga aagtttggaa gctcagagta ctttggctca
     1201 tcctgaccaa gaccattggc ggtcagaagt agaccgataa aaagcgccgc gaaaaacttc
     1261 gttctgttgc tcataaaatc cccgcttgaa tctatgttat ctcattcagg aaatcagtca
     1321 ccgaatcgag caccagttga gtttgatctc ggtgcgggct gtggccacag ttcgcgaggc
     1381 cgaccgtttt gacgatgccg ctgcattggt tctcgattgc ctcaatctgc cggtgggtac
     1441 cgtactgatc atcct
//
LOCUS       DATCGC010001252         1266 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_184802, whole genome shotgun sequence.
ACCESSION   DATCGC010001252 DATCGC010000000
VERSION     DATCGC010001252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1266)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1266)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1266
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184802"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1194)
                     /locus_tag="VIJ87_12110"
     CDS             complement(<1..1194)
                     /locus_tag="VIJ87_12110"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEY5445182.1"
                     /translation="MTPRQRRILIITGLVALLIVALIAFAIWRWKGKHEEETEVTPVV
                     SVKVAKAESAPIAAEVIAVGTIWPKEKADVAAKISAQIKTMALLKNKLVKAGEVIAVL
                     ESRDLQAQRAEALAAVNEARANERSMVTGTIPQTNAADQKAQQDARAKVANARATFER
                     RRVLYQNGGISKKDLEASELELKTAENELRLAEQTIELRAKSLNPNDRALAPARTAQA
                     QQHLATLDAQLSYATIRAPITGIVTDQFQYEGEFASAGGKLVTIADISQVIVKAPFSD
                     TAVADLKVGDSAAVLPTDTSSEELTGQVTLLSRSSDPTNRSVEVWVTLGNGSGTLRAN
                     GAVQVKVFANSKRDAIVVPASAISLDASNSSDGTVMVVDEQSVAHETKVTIGTRTKDK
                     VEVVSG"
BASE COUNT          243 a          365 c          318 g          340 t
ORIGIN      
        1 ccctgaaaca acttcaacct tgtctttagt gcgcgtaccg atcgtcacct tggtttcatg
       61 tgcaactgat tgctcgtcga caaccatcac cgtcccgtcg cttgagttgc tcgcgtcgag
      121 actgatggcc gatgccggta caacgatcgc gtcccgtttt gaatttgcaa agacctttac
      181 ttgcactgca ccgttcgctc gtaacgttcc ggatccattg ccgagggtta cccaaacttc
      241 cactgagcga ttggttggat cgctcgatcg actcaacaac gtcacttgac ctgtcaattc
      301 ttcagaggag gtgtcggtag gtagcacagc cgccgagtcg cccactttca gatccgccac
      361 agcagtgtct gagaatggag ctttgacaat aacctgacta atgtcagcta tggtgactag
      421 cttgccgccg gcgctggcaa actcaccttc atattgaaat tgatcggtga cgatgccggt
      481 gattggcgcg cgaatcgttg cgtaacttag ttgggcatca agggtggcga ggtgttgttg
      541 cgcctgggca gtccgtgccg gggcgagtgc gcgatcattt gggttaagtg atttcgcgcg
      601 cagctcaatc gtttgctcag caagtctcaa ctcgttttcg gcagtcttta gttcgagttc
      661 tgacgcttcg agatccttct tcgaaatgcc accgttttgg tacagcaccc tgcgacgctc
      721 gaaggtagca cgtgcgttcg cgacttttgc gcgcgcatcc tgctgcgctt tttgatccgc
      781 cgcattcgtt tgtggaatcg tgcctgtcac catgcttcgt tcgttcgccc ttgcttcatt
      841 aacagctgcc agcgcttcag ctcgttgcgc ttgaagatcg cgtgattcca acacagcgat
      901 cacctcgccg gctttcacga gcttgttctt caacaaagcc atggtcttaa tctgcgcact
      961 gattttggcg gcaacatcag ctttctcttt gggccagatt gttcccacgg caatcacttc
     1021 agcagcaatc ggcgcagact cagctttcgc gaccttcaca ctcacaactg gtgtgacttc
     1081 cgtttcttcc tcgtgctttc ctttccagcg ccaaatcgca aaggcgatca gagccacgat
     1141 cagtagcgcg actagccccg taatgatcag gattcgacgc tgacgcggcg tcatcggctc
     1201 gctgactcgt ctgggttcac ttactcgtcc aggttcactt actcgtccag attcagaagc
     1261 gagatg
//
LOCUS       DATCGC010001253         1405 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_184809, whole genome shotgun sequence.
ACCESSION   DATCGC010001253 DATCGC010000000
VERSION     DATCGC010001253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1405)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1405)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1405
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184809"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(38..1021)
                     /locus_tag="VIJ87_12115"
     CDS             complement(38..1021)
                     /locus_tag="VIJ87_12115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445183.1"
                     /translation="MYRRQSRLVGYLLPIALAAVFLPARASAQKLEIVYYGPPSLSLS
                     SDTSVVSACSNNPQVKLNARASSPAGRPIRYRWSTSAGRINGNGPSVLWDLSGLPPGV
                     YKAYIEIETGSNGDECNRFTSTTVVVKDCPTVRPTCPNVEIICPTNIAVDQPLTFTSN
                     LSSATSGVVPTYNWSVSAGSIIEGQGTPTIKVDTTGLAGQTIKATLSMDGFTLDCSAS
                     CAVSMPVPEPKCRRFDEFPNILRNDEKARLDNYAADLQNDPTSTAYVVVHPGRSGKPG
                     DAQRHTTRIVDYLVNSRLMDARRIVTLVGGARDELLVELWTCQQGATAPNP"
BASE COUNT          308 a          343 c          393 g          361 t
ORIGIN      
        1 gttggctttt gtactccacc cgcttgttcg taactgatta tggatttggt gccgtggcac
       61 cttgctgaca cgtccacagt tcgactaaca actcgtctcg cgctccgcct accagagtaa
      121 cgatgcgtct agcatccatg agacgtgagt tgacgagata gtcaacgata cgagtggtgt
      181 gtctctgtgc gtcgccgggt ttgcccgaac gtccaggatg gacaacgacg taagctgttg
      241 acgtcggatc gttttgcagg tcagcagcgt agttatcaag tcgagccttt tcgtcgttgc
      301 ggagaatgtt cggaaactcg tcaaacctgc gacacttcgg ttcaggaacc ggcattgaga
      361 cagcgcagct ggctgaacag tcaagcgtga atccatccat cgataacgtg gctttaatag
      421 tctgtcctgc tagtccggtt gtgtcgactt taattgttgg tgtgccctgg ccttcgatga
      481 tcgagccagc agagacgctc cagttgtaag tcggtacaac tccggatgtg gcgctcgaaa
      541 ggttcgaagt aaacgttagg ggctgatcga ctgcgatgtt ggttggacaa atgatttcaa
      601 cgttaggaca cgttggacga actgttggac agtctttcac gacgaccgtg gtagacgtga
      661 atctattgca ctcgtcgcca ttgcttccag tttcgatctc gatgtaggcc ttgtagacgc
      721 ccggtggaag ccctgacaaa tcccacagta ctgatgggcc attaccgttg attcgtccag
      781 cgctggtcga ccagcggtat cgaattgggc ggccggccgg ggagctggct cgggcgttta
      841 gttttacttg agggttattt gaacaggcgc tcactacaga tgtgtcggag ctcaaactga
      901 ggctcggcgg accgtaataa acaatttcca gtttctgggc tgacgctcgg gccggcagga
      961 aaacggctgc cagagcaatt ggcagcagat aaccgactag acggctttgt cttctataca
     1021 tttgcactcc tcgattcagt catagctctg gccgctccgg gcatcgcctg agaaaaatca
     1081 cttgatagga gataaggcca atcggaagga gtttccacaa cagatctagc cgggctgcgc
     1141 tccgcgcgat tctttaagtc taagcaatgg tagcggtttg actcttatgg tgggattgac
     1201 gttagataag agcgcttcaa atccaacccg cagcctttga tagtgtcctg attctttaga
     1261 catgaataaa gttttcgtta ttgttgtgct ctccctgttc ctggtcattt ccgggtgcaa
     1321 gcgtggaaca aagtcgaatg cgaatagttc tgctaacggc agtgacacgg cgaacggagt
     1381 ggctcctgat cctgcacagg cgcgc
//
LOCUS       DATCGC010001254         2499 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_52148, whole genome shotgun sequence.
ACCESSION   DATCGC010001254 DATCGC010000000
VERSION     DATCGC010001254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2499)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2499)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2499
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52148"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..909)
                     /locus_tag="VIJ87_12120"
     CDS             complement(<1..909)
                     /locus_tag="VIJ87_12120"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEY5445184.1"
                     /translation="MHAVIVDTTLTTPPTGGAQTFLVELCRALVLMDWKISVVTQPGP
                     ENAIVHSLRKGGAEVHDNIWRPAHLPEERGRALAAWVNSEKPDVYVVSISPDSGWLAL
                     PSLDPGIPTVSIAHNDVGAFYEPLNYYLLFIDAAVGVSETIHRKIIEQCNIPPERATH
                     IPYGVNSLALAEVDQILEKRVGREVLRICYLGRLAQHQKRVLEFVPLAAELVKSNVAF
                     ELHLLGDGSERKELETQFSELGLDDRVTVWGWLTPKEIAAKLVEMDAFVLLSDHEGLP
                     VALLEAMAHSLVPIVTNIESGNTQVVQ"
     gene            complement(971..1720)
                     /locus_tag="VIJ87_12125"
     CDS             complement(971..1720)
                     /locus_tag="VIJ87_12125"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024967.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY5445185.1"
                     /translation="MLKSFYSTARRVMTPRMFKQIIRKAKNTLHPVIDISDEFTELLS
                     GINAGWLERGNLYSFDYAMRNLPSEAPIIEIGSFCGLSTNLLAYYKQANSVKNKVVNC
                     DKWQWNDTGQVGHSTFTYPEYLSFAKDAYIRNVQMFSRDDLPYTIELFSDEFFQQWRE
                     NREVSDVFGRTLRLGGPISFCFIDGNHAYDYAKRDFVNTDEFLESGGFILFDDSADGT
                     KWEVSRVRDEVIATRRYDVVAKNPNYLFRKK"
     gene            complement(1810..>2499)
                     /locus_tag="VIJ87_12130"
     CDS             complement(1810..>2499)
                     /locus_tag="VIJ87_12130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445186.1"
                     /translation="EQQVGLLAESPELDIVYSNVRYFDNENPANLRVANLNDQPWMPL
                     ITGAGKEILLPIVRNNIMPVNAPLMRRSTVEEIGPFNEILPPVEDWEYFIRCAAAGKR
                     FHYADEEDIRALVRTHPESSSSDQRRMLRAEILMRETIPSLLKDEDVARLNEERRAEI
                     TGLLGVEEHTNGWRAKAASQFLKASTLDKRVRCRAKWLLCAAAAPFATSAQMRKLVSG
                     SISNSLADALR"
BASE COUNT          568 a          673 c          656 g          602 t
ORIGIN      
        1 ttggaccact tgagtgtttc cgctttcgat atttgtaacg atcggaacca aactatgagc
       61 catcgcttca agcagcgcga ccggcaaacc ttcgtggtct gagagcaaca caaacgcgtc
      121 catttcaacg agcttcgcag cgatttcctt gggagtcagc caaccccata ccgtcactcg
      181 atcatcgaga ccgagttcac taaactgggt ctcaagctcc ttacgctcac tgccatctcc
      241 aagcaggtgc aactcgaaag ccacattgga ctttaccagt tcagcggcca gaggtacgaa
      301 ttccagcact cttttttgat gctgggccaa tcgtcccagg taacaaatac gcagcacctc
      361 ccgacctacc cgcttttcga gaatctgatc aacctcagcc agggccagtg aattgacacc
      421 ataagggatg tgggtcgcac gctcaggggg aatgttgcat tgctcgatga tcttacgatg
      481 tattgtttca cttacgccga cggctgcgtc gataaagaga aggtagtaat tcaagggctc
      541 gtagaaggcg cccacatcgt tgtgagcgat ggaaacggtt gggatccctg ggtcaagtga
      601 aggaagtgcg agccagccac tatcgggcga tatcgaaaca acgtagacgt ctggtttctc
      661 agaattcacc cacgcggcca aagctctgcc acgctcctca ggcaagtgtg cgggcctcca
      721 aatgttgtcg tggacttccg ctccaccctt cctcagtgag tggacaatcg cattctccgg
      781 ccccggctgc gtaacaacgg atatcttcca gtccatgagg accagggcac ggcaaagctc
      841 gacgaggaac gtctgtgcgc cgcccgttgg cggtgtggtg agggttgtgt caacgatgac
      901 cgcgtgcatt aaaagtctgt gtttccaatc gctatgtctt gttcgaagtc cgggcaaaca
      961 ctccgaactg tcacttcttc ctgaagaggt aattaggatt cttggctaca acgtcataac
     1021 gtcgcgtcgc aattacctcg tctcttaccc gtgatacttc ccactttgtt ccgtccgccg
     1081 aatcgtcaaa gagaatgaag ccaccgctct cgaggaactc gtcggtgttc acaaagtcgc
     1141 gctttgcata atcataagca tggtttccat cgatgaagca gaagctgatt gggccaccca
     1201 atcgaagcgt tctcccaaaa acatcggaga cttcgcggtt ctcgcgccat tgctgaaaaa
     1261 actcgtcgga gaataactca atcgtgtacg gcaggtcatc acggctgaac atttgcacat
     1321 tgcggatgta agcgtccttc gcgaagctta agtattcagg gtaggtaaac gtcgaatggc
     1381 ctacctgccc tgtgtcgttc cactgccact tgtcgcagtt aaccactttg ttttttacgc
     1441 tgttggcctg tttatagtag gcgagaagat tggtggaaag accgcagaag gatccaattt
     1501 cgatgattgg cgcctcgctg ggaaggttac gcattgcgta atcaaagcta tagaggttgc
     1561 ctcgttcgag ccagcccgca ttgattccgg agagaagctc ggtgaattca tccgagatgt
     1621 cgatcactgg atggagagta ttcttcgcct tcctaatgat ttgcttaaac attcggggcg
     1681 tcattactct cctggccgtg ctgtaaaaac tcttgagcat taaattgtcc gacaccaatt
     1741 gagatgctct ttcgagatgg cggattttta gcgaccgcca atgggaccat tatccccaaa
     1801 acttaaagat caccgcagag cgtctgcgag tgagttgctt atcgaacctg acaccagttt
     1861 gcgcatttgc gccgatgtcg cgaaaggcgc agctgcggcg cacaggagcc acttggcgcg
     1921 gcagcgcaca cgtttgtcca gagtgctcgc cttgagaaac tgcgaggctg ccttggcgcg
     1981 ccaaccattg gtatgttcct cgacaccgag cagaccggta atttcggccc gacgctcttc
     2041 gttgagccgg gccacatctt cgtctttcag taacgaggga attgtctctc gcatcaggat
     2101 ctcagcgcgc aacatgcgcc gctggtcgct gctcgagctt tcgggatgtg tgcgtacgag
     2161 cgcgcggata tcctcttcgt ctgcgtagtg aaagcgtttg cctgcggctg cgcagcgaat
     2221 gaaatactcc caatcttcga ccggcggcag tatctcgttg aaaggcccaa tctcctcgac
     2281 tgtcgagcga cgcatgagag gggcattaac aggcatgatg ttgttgcgca cgattggcag
     2341 gagaatttct ttaccggcgc cggtgattag gggcatccac ggctggtcat tcagattcgc
     2401 tacccgcaga ttagcaggat tttcgttgtc gaagtaacgg acgttggagt agacgatgtc
     2461 aagctctgga ctttcggcga gcaacccgac ctgctgctc
//
LOCUS       DATCGC010001255         1074 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_484490, whole genome shotgun sequence.
ACCESSION   DATCGC010001255 DATCGC010000000
VERSION     DATCGC010001255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1074)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1074)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1074
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_484490"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..796)
                     /gene="aroF"
                     /locus_tag="VIJ87_12135"
     CDS             complement(<1..796)
                     /gene="aroF"
                     /locus_tag="VIJ87_12135"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: protein motif:HMM:NF006421.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HEY5445187.1"
                     /translation="MLIVMKHDATDDQIEAVLRVIEELGFKGHPMPGATRTAIGITGN
                     QGAVDPSHFENLVGVAEAIRVSKPYKLISLDLRPEKTIVRVGDATIGGDELAIIAGPC
                     AIESRAQAFAIAEAVRRSGARFFRGGAYKPRTSPYAFQGLGEEGLRILADVREAYGLK
                     IVTEALDEAGVDLVERYGDVIQIGARNMQNFSLLRRAGKARLPVLLKRGLSATLDEWL
                     LAAEYVMAEGNYQVVLCERGIRTFAQHTRNTLDLAAIPAVRRLSHLP"
BASE COUNT          250 a          301 c          271 g          252 t
ORIGIN      
        1 ccggcaagtg cgacaggcga cgcaccgcgg gaatagctgc gaggtcaagc gtgttcctgg
       61 tgtgctgcgc aaacgtacga ataccacgtt cacagaggac aacctgatag ttgccttccg
      121 ccattacgta ctcggctgcg agtaaccatt cgtcaagcgt tgctgacaga ccacgcttca
      181 gcaggactgg gagacgagct ttgccggctc ttcgcaacaa cgaaaaattc tgcatgttgc
      241 gcgcgccaat ttgaatcaca tcgccataac gttcgaccag atcaacgccc gcttcatcca
      301 gcgcttcagt gacaattttc agaccatagg cttcgcgaac gtcggccagt atcctcaaac
      361 cctcttcacc aagaccctga aaagcgtacg gtgacgttct tggtttgtaa gcacctccgc
      421 ggaagaaacg tgccccgctt ctccgaacag cctctgcaat tgcgaacgcc tgcgcgcgac
      481 tttcgatcgc acacggacca gcgatgatcg ccaattcgtc gccgccaata gttgcatctc
      541 caacccgaac aatcgtcttt tcgggtctca gatcgagcga gatcagtttg tagggtttgc
      601 taacgcgaat cgcttcagca accccgacga ggttttcaaa gtgtgacggg tcaaccgcac
      661 cttgattacc tgtgattccg attgctgtgc gggtagcacc cggcatgggg tgacctttaa
      721 acccgagttc ttcaatgacg cgcaggacag cctcgatctg gtcgtcggtg gcatcgtgct
      781 tcattacgat tagcatggtt tctttatacc tttacgattt gggaaaagta cagtgaaaga
      841 ggtctttggg gttggcattg cgcaaaaagt ctggaatccc ccggcacggc agtgcgggga
      901 tatattcaag tccaacctac aagtcgatga gaagtttcag aattccacca actgccgttg
      961 gtgggattcg aatactcttc aaacgtcgct ccttagtagg tcggatctga acaatctccg
     1021 cactgccgtg tgggggattc cagacttttg tgcaatgcca ctccaagcct acat
//
LOCUS       DATCGC010001256         1010 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_415470, whole genome shotgun sequence.
ACCESSION   DATCGC010001256 DATCGC010000000
VERSION     DATCGC010001256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1010
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_415470"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(316..>1010)
                     /locus_tag="VIJ87_12140"
     CDS             complement(316..>1010)
                     /locus_tag="VIJ87_12140"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5445188.1"
                     /translation="LGFVRLHYDRDWQEAERELRTAILLRPSNQVAHRWYAFSLSAMG
                     RHDEAYSEIEKARQISPQSPVIATAVANVLFLAGKFDEAIAQCRKALELDPGSVAAHT
                     VLRWAFERKGMHSEALAAYEQERSFAGDTPTTNAKRAHVLAAIGKFDEASAILDELVT
                     KRTENWVTAYEIAIIYTLLGDHDNAFKWLLQAEREHAVGFTFVRVDPHLANLRSDKRF
                     SELIRETDKTIP"
BASE COUNT          205 a          294 c          262 g          249 t
ORIGIN      
        1 aacctgggaa tcccactcac ggcagtgggt ggatggttca agtccgccta taaggccgaa
       61 gtcccggctt tggctggaat ccccctcact gcagtgagtg gatggttcaa gtccgaccta
      121 ccaatcttga ctcactgcct cgcaatgtag cgacgaactc cgcttcgcga ccttcgcagc
      181 agtaaggttg gacttgaacg atcccccaac tgccgttgtg ggtattccct ccagcgcttg
      241 gaggtcgtac ttttgtaggt tggacttgaa ccatccaccc actgccgtgg gtggtattgc
      301 ccttcgatgc tacacctacg gaatcgtctt gtcggtttcg cgaatgagtt ccgagaagcg
      361 cttgtctgat ctgagatttg ccaggtgcgg atcaacgcga acgaaagtga agccaactgc
      421 gtgttcacgt tctgcctgca gcagccattt gaatgcgttg tcgtgatcac cgaggagcgt
      481 gtagatgatc gcaatctcgt atgcggttac ccagttctca gtgcgcttgg taaccaactc
      541 atcgaggatc gcgcttgcct cgtcaaactt tccaatcgcc gccaacacgt gcgcgcgttt
      601 agcgttcgtt gttggagtat cgcccgcaaa actccgctcc tgttcatacg ccgccagcgc
      661 ttcactgtgc attccttttc gctcaaaggc ccaccgcagc acggtgtgag cggccactga
      721 accgggatct agttccaatg ctttccgaca ctgagcgatc gcttcgtcaa acttacctgc
      781 gaggaaaaga acgtttgcaa ctgctgtcgc aatcactggc gactgaggcg aaatctgacg
      841 cgctttttct atttccgaat acgcttcgtc gtgccggccc atcgctgaaa ggctgaaggc
      901 gtaccatcga tgcgcaacct ggttgctggg tctcagtaga atagcggtcc gcaattcgcg
      961 ctccgcctct tgccaatctc gatcatagtg cagtcttaca aagcccagtg
//
LOCUS       DATCGC010001257         1423 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_150348, whole genome shotgun sequence.
ACCESSION   DATCGC010001257 DATCGC010000000
VERSION     DATCGC010001257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1423)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1423)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1423
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150348"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1038)
                     /locus_tag="VIJ87_12145"
     CDS             complement(<1..1038)
                     /locus_tag="VIJ87_12145"
                     /inference="COORDINATES: protein motif:HMM:NF013595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445189.1"
                     /translation="MKLVMSPRRVESRSSHKRRKFHWLPFLPILAAMLFGVVVVSAAS
                     FILKFGTVGSGNGQFLTARGIAVDPTGNVYVVDASGDSNGQVQKFDANGNFLNRVGAN
                     NGTAQGFISAHRVTTDSSGNVYATDGATESVSNVVKKFNASGVFQFAFGSAGAGGQFL
                     SAAGIAVDSSGNIYVVDLGAKLIRKFSSTGTPITTIGSSGSGDGQFTDPVGIAIDSAN
                     NIYVADTGNNRIQKFNSAGMFVTKWGTMGSGNGEFNGPQGVAVDNAGTVYVADTGNNR
                     VQLFSSAGTFMEVVGSAGSGDGQFMSPTDVATNSAGTFFYVADQDNFRVQKFSTSTAS
                     PTANAGADQTVE"
BASE COUNT          340 a          363 c          375 g          345 t
ORIGIN      
        1 ctcgacggtt tgatcagcgc cggcattcgc ggttggcgac gcagttgaag tgctgaattt
       61 ctgaacacga aagttatcct ggtcggcgac gtagaagaac gtgccggctg agtttgtcgc
      121 aacatccgtt ggactcatga attgtccatc gccgctgcct gcactcccga ccacttccat
      181 gaatgttcca gcagaggaaa agagttgcac acgattgttt cccgtgtcag ccacataaac
      241 tgttccggca ttatcgacgg cgacgccttg aggcccgttg aattcaccgt tgccgcttcc
      301 catcgttccc cacttcgtaa caaacatgcc ggcactattg aatttctgaa ttcgattgtt
      361 ccctgtatcg gctacgtaga tgttgttagc cgaatcgatc gctataccga ctgggtcggt
      421 gaattggcca tcgccgcttc cactggaacc aatcgtggtg attggggtac cggtggagga
      481 gaatttccta atgagcttgg cgcccaagtc aacgacgtag atattgcctg atgagtcgac
      541 agctatcccc gctgctgaca ggaactgtcc gccggcacct gccgagccaa aggcaaactg
      601 aaacactcca ctggcattaa actttttgac aacattgctg actgactcag tagcgccgtc
      661 cgtcgcgtaa acgttaccgc tcgaatcggt ggtgactcgg tgagcgctga taaaaccttg
      721 agcagtgccg ttgttagcgc caaccctgtt gaggaagttg ccgttcgcgt cgaatttttg
      781 aacttgaccg ttactatcgc ctgacgcgtc cacgacataa acgttaccgg ttgggtcaac
      841 cgcaattcct cttgccgtca ggaattgtcc gtttcccgaa cccacggttc cgaatttcag
      901 gatgaacgaa gcagctgata ccacaaccac tccaaagagc atcgcagcta agatcgggag
      961 gaagggcaac caatgaaatt tgcggcgttt atgagacgaa cgcgactcga cgcgtcgggg
     1021 tgacatgact agtttcattt cgatctcctt ttgttctgtt gcgaagtcag agacaggtgc
     1081 gcaatgaagg gcgcgaagag atttctttac gatcgattca ggtccgaact tctttcgagg
     1141 cggctaacaa aggcgtggag ccgattagag ttcggtgata tgcggggaaa gataatgccg
     1201 ggtcacgaaa tttgtcaatg agaaggctga gagaatggat gatggaagtt aatgactact
     1261 aagatggcgt gattatggcg cgctggcgtg ttcagacata gcaagatgca accaactttg
     1321 acggcgcgga ttcggtaaat actgctacat cttgtttggt ccaacttcat cgatgcccct
     1381 caaaccgtct cataactgcg aggcaccaat cagctgccag tcg
//
LOCUS       DATCGC010001258         1889 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_350550, whole genome shotgun sequence.
ACCESSION   DATCGC010001258 DATCGC010000000
VERSION     DATCGC010001258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1889)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1889)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1889
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_350550"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1362
                     /locus_tag="VIJ87_12150"
     CDS             <1..1362
                     /locus_tag="VIJ87_12150"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HEY5445190.1"
                     /translation="TLVETESLITRLSETRGTRNKTALLTVFLAKASPLEAKYLIKLL
                     AGDLRIGLREGLVEDAVARAFDQSLSDVAYANMLLGDIGETAVRARASDLREVGMRLF
                     HPIKFMLATPAADLSDIARTMPPEFLIEDKFDGIRAQAHVKDQRVAIYSRTMDEITHR
                     FPELIEPLRALPDDVIIDGEIVPATEAGILPFSELQKRLGRKTVGSQLLIAVPVILVA
                     YDLLYAGGRVLIDDPLLERRAILKELIPDNGALKMSDGKVFNDVVLLDNEFDAARARG
                     NEGLMIKSPSSAYKPGRRGRDWLKLKRAIATLDVVVTSVEVGHGKRRNLLSDYTFAVR
                     RSVENGELLNIGKAYSGLTDRELTELTEWFRNHTIQEFAHGRVRVVEPKVVIEVTFDR
                     VQPSKRHKSGFALRFPRIVRLRTDKSVTEIDTLETVKRLVAGGDVNPESPPAAKSEDF
                     DWK"
     gene            complement(1561..>1889)
                     /locus_tag="VIJ87_12155"
     CDS             complement(1561..>1889)
                     /locus_tag="VIJ87_12155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445191.1"
                     /translation="DGYYHKQPIRAWLDSTLTGFDYKSEEKIKMKLVKKLVLPVLFVS
                     VLAVNAYAGEIETPGYAPPPPPPDHSVYRTNTEETTNNSDQLLNSDELTDQLLYDAMT
                     AILSMF"
BASE COUNT          460 a          413 c          521 g          495 t
ORIGIN      
        1 actctggttg agactgagtc gctcataacc aggctcagcg agactcgcgg aaccagaaac
       61 aagacggcgc tgctgactgt ttttttagcc aaagcttctc cgctggaggc taagtatctg
      121 atcaagcttt tggctggaga cttgcggatt ggtttgcgag agggattggt cgaagacgct
      181 gtggctcgag cctttgatca gtcgctgtca gacgtggctt acgcgaacat gctacttggc
      241 gatatcggcg agactgctgt acgagctcgt gcttccgatc ttcgtgaagt agggatgcgt
      301 ctttttcacc caatcaaatt catgttggca acgccagcgg ctgacctttc agatatcgcg
      361 cgcacgatgc caccagagtt tttgatagaa gacaagtttg acggaattcg cgcacaggcc
      421 cacgttaagg accagagggt cgcaatctac tcgcgaacaa tggatgagat tactcatcgc
      481 tttcctgaat taatcgaacc attacgagca ttgcctgatg acgtaatcat cgacggagaa
      541 attgtcccag ccactgaagc agggattctt ccgttcagtg agcttcaaaa acgattagga
      601 cgtaagaccg ttgggagtca attgctaatt gctgtgcccg tgatccttgt tgcttacgat
      661 ctcctctacg cgggaggaag agtattaatc gatgatccgc tgttagagcg acgggcaatc
      721 ttaaaagagc taattccgga caatggtgcg ctcaagatgt cggatggaaa ggtattcaac
      781 gatgtcgtgt tgcttgacaa tgaattcgat gcggcacgcg cgcggggcaa tgaaggctta
      841 atgatcaaga gtccctcttc cgcttacaag cctgggcgac gtggacgcga ttggttgaag
      901 ttgaagagag caatcgccac gctcgatgtc gttgtaacct cggttgaggt cggccatgga
      961 aaacggcgaa atctgctgtc ggattatacg tttgcagtcc gacgttcagt tgaaaacggg
     1021 gagttgttga atatcgggaa ggcctattcg ggattgactg atcgcgaact gactgagcta
     1081 acagaatggt tccgaaacca tactattcaa gaatttgctc acgggcgcgt tcgagtggtc
     1141 gagccgaagg tcgtgattga agtaacgttt gacagagtac agccttcgaa acgacataag
     1201 agtggttttg cactgcgctt cccgaggatt gttcgcctac gaacagacaa gtcggtgact
     1261 gagattgaca cgttggaaac ggtaaaaagg ctggtggcag gcggcgacgt gaatcctgag
     1321 tcgccgcctg cagccaaatc tgaagatttt gattggaaat aattgaagct gaccgcttat
     1381 tcgagttcta ttctaacggt cattgctatt gccatagagt cggtgtggga ggtaggatgc
     1441 tgctcgtcac cgccctctct aaatgtttct tttgcgatcc ggtgagcctg cacacacaat
     1501 tttccgcagg ccgcgagtgc ccagcaataa cggtaataag actttggttc tgggattgcg
     1561 ctagaacatc gacaatatgg ccgtcattgc gtcgtagagt aactggtcgg taagttcgtc
     1621 tgagtttagt aattgatcgc tgttattggt ggtttcttca gtatttgttc gataaactga
     1681 gtgatcgggt ggtggcggtg gtggagcata gcctggcgtt tcgatttctc ctgcatatgc
     1741 gttcaccgcg agaacagaca caaataggac aggcagtacc aactttttga caagtttcat
     1801 tttgatcttc tcctcagatt tgtagtcaaa gccagtgagg gttgagtcca accaagctcg
     1861 aattggttgt ttatgataat atccgtcaa
//
LOCUS       DATCGC010001259         1479 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_350608, whole genome shotgun sequence.
ACCESSION   DATCGC010001259 DATCGC010000000
VERSION     DATCGC010001259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1479)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1479)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1479
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_350608"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1103)
                     /locus_tag="VIJ87_12160"
     CDS             complement(<1..1103)
                     /locus_tag="VIJ87_12160"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY5445192.1"
                     /translation="MNLFQAIFTNNPSSIAIVHSGREITYGDLQAETLKTAGAITSLG
                     IRPGDRVALLLHDSPEFIEAFIAICSLGAITVPINMALPVEDQRSILHNSGARLALME
                     DDIRHTLLTGASEKLRQLQEIVVLEQTEERGLKYLSQLKGETQTSHLRDFPEPETDQP
                     AFILYTSGSTGEPKGAVHSQANIFHTNQSFCREVLKLTSGDRLFSSSRLPFAYGFGNS
                     CSFPLLNGATTILCKEKPNPDVIDRVFSESRPTIFFGVPVVYNLLLEHHRSVKKLDCS
                     SLRMCVSAGEALPSHLGEKWEEEFGVPLLDGIGSTEMLHMFMSNHENDICYGSSGKLL
                     AGYEAQLRDEQGEPAQRDEGNLGIKGASAALGY"
BASE COUNT          336 a          369 c          391 g          383 t
ORIGIN      
        1 cagtaaccca acgcggcact ggcccctttg atcccgagat tcccctcgtc tcgttgtgcc
       61 ggttctcctt gttcatctcg tagctgagcc tcataaccag ccagcagttt tccgctgctt
      121 ccgtagcata tgtcgttttc atgattcgac atgaacatat gcagcatttc cgtcgagccg
      181 attccgtcga gaagcggaac gccaaattcc tcttcccatt tttcacccag gtgcgacggc
      241 aatgcttcgc ctgcggagac acacatccgg agactagagc agtcgagctt cttgacactt
      301 cgatggtgtt cgagcagcag gttgtaaaca acagggactc cgaaaaagat cgtcggccgg
      361 ctttcactga acacgcgatc gataacgtcg ggatttggct tttccttgca aagtattgtc
      421 gttgcgccat tcaggagtgg aaacgaacag ctatttccga agccgtaggc gaatggcaac
      481 cgcgatgaag aaaacaggcg atcaccagaa gtaagtttca atacttcacg acagaacgat
      541 tggttcgtgt ggaagatatt ggcctgtgag tggactgccc ccttcggttc gcctgtgctg
      601 cctgacgtgt aaaggatgaa ggctggctga tcggtttcgg gttctggaaa gtcgcgcagg
      661 tgcgaagttt gggtctcgcc cttcaattgg ctcaaatact tcagacctcg ttcttctgtt
      721 tgctccagga cgactatctc ctgcaattgc cgcagctttt ccgaagcacc tgtcagcaac
      781 gtatggcgga tgtcgtcctc cattaacgcc aggcgggctc cggagttgtg aaggatcgaa
      841 cgctgatcct cgacgggtag ggccatgtta atgggaacag tgattgctcc caaggagcat
      901 atggcaatga aagcctcaat gaactcagga gaatcatgga gtagcagcgc cacgcgatca
      961 cccggtctga ttcccaacga ggttatcgct ccagctgttt tgagcgtctc cgcttgaaga
     1021 tcgccgtagg tgatttcacg gcccgaatga actatcgcaa tcgatgaagg attgttagtg
     1081 aagatggcct gaaagagatt cattgtttgc agaatatgtc tgttccttcc attaactcaa
     1141 cctctttatt caagggtggt gtcctagttt gagagtctct gcgcaacctc tgtgttctct
     1201 gcgtctctgc ggtgtagagt gccgtggtgt tttaaccgca gagacgcaaa ggacgcagag
     1261 gttgcgcaga gaagaatcca gattagggca caactttatt caagtgccaa agtaggtaca
     1321 caaatggacg tactaatagt tttactgatc gtgctgattg ttgtcttggc cctagttacc
     1381 gtactgggcc atgcgatgtg gttggtctgt gctgcggctg ttgaaggtct aacgacctca
     1441 aagcctcaac aggttgcacc gaatattctc agttggcgc
//
LOCUS       DATCGC010001260         1108 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_52255, whole genome shotgun sequence.
ACCESSION   DATCGC010001260 DATCGC010000000
VERSION     DATCGC010001260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1108)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1108
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52255"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..180
                     /locus_tag="VIJ87_12165"
     CDS             <1..180
                     /locus_tag="VIJ87_12165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445193.1"
                     /translation="QEFLTKGELQRGLVIGGCTVGSGVAIVVAVGSGGGAAPLLAAGA
                     ASTGCVGTIWMIASP"
     gene            807..1010
                     /locus_tag="VIJ87_12170"
     CDS             807..1010
                     /locus_tag="VIJ87_12170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445194.1"
                     /translation="MNIIVHAVYLYIHLIFIAVPYLASGVAVWLYYQYKEVKLHNAAA
                     DAYAQMIGVSREDAKKIIFRDPI"
BASE COUNT          292 a          292 c          303 g          221 t
ORIGIN      
        1 caggagttcc tgaccaaggg cgagcttcaa cgaggcttgg tgatcggagg atgcactgtc
       61 gggagtggtg tggcaatcgt ggtcgctgtc ggatcgggtg gcggcgcggc tccacttctg
      121 gcggcaggtg ctgcatctac cggatgtgtg ggaaccatct ggatgatcgc tagtccctga
      181 tccacagacg cgcgcactag gaaacggaaa gctgttccaa tccagtgagt aagggagcct
      241 aggcgctttg ggagccccaa ccagggtgcc cattcagacc tgaacatgtc tggctgctaa
      301 aatgttccgg ctgtagaacc gtggtcgtta ggaagtagga agcccacgtt atagggacga
      361 cgaaactaaa cggttcccac aattatactg gtaatatcca gctgagtggg gatgaggtga
      421 tgacaatgaa tgcgccctag aaatagggct actagatgct gtggggtagg ggctcgggga
      481 acagatctga gctaaccggg cctctacacc cgcagaaatt acaaggggtg taatagaacc
      541 ccacaaacag aaggaacagt tatgaacctc accacacgac tttacatcgc catgatcagt
      601 cctgctgaat accacagcaa gaccggtctg acccgcatga acctcgtcac cctgaagaag
      661 taacaccaca gctggctggg gggccaggtc taagaccacc gttgaactcg aaagagatcc
      721 ggtggtctta ggctttatgc ttttacgtat taaggcgcac gcatgattta catggctcct
      781 aataggaacc cccagaaagg aaaaccatga acatcatcgt ccatgccgtt tacctctaca
      841 tccacctgat tttcatcgcg gtcccgtacc tcgcctccgg cgtcgcagtg tggctttact
      901 accaatacaa ggaagtgaag ttgcacaacg ccgccgctga cgcgtacgcc cagatgatcg
      961 gtgtgtcgag agaagacgca aagaagatca ttttcagaga ccccatctga gacaccaagc
     1021 aagagcccga catgggctct tcgctttcgc ccaacaagaa ggagcaagaa gatgaccatt
     1081 cccaccagca agctgaacaa agttcccg
//
LOCUS       DATCGC010001261         1146 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_250950, whole genome shotgun sequence.
ACCESSION   DATCGC010001261 DATCGC010000000
VERSION     DATCGC010001261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1146)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1146)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1146
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250950"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..192
                     /locus_tag="VIJ87_12175"
     CDS             <1..192
                     /locus_tag="VIJ87_12175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445195.1"
                     /translation="LIRVQTLGPDGAGLRPYSANVMLHNRSGTFTLPLALNDVPGKYT
                     IKATDVVTGASFQKTIELK"
     gene            198..593
                     /locus_tag="VIJ87_12180"
     CDS             198..593
                     /locus_tag="VIJ87_12180"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025004.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HEY5445196.1"
                     /translation="MRLETLRAVVDCLIPPDDYAGAFDAGVCDFIVRLFETDLAEQRE
                     FFDAGLEAIESEALARFDTRFADLSPDQQVVILESTERGSVNTPWPIAPDQFFEILVR
                     TTAEGYYSDPEQGGNRGSISWAMTGFQEV"
     gene            598..>1146
                     /locus_tag="VIJ87_12185"
     CDS             598..>1146
                     /locus_tag="VIJ87_12185"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding protein"
                     /protein_id="HEY5445197.1"
                     /translation="MNDYDVIIVGAGAAGGIVACVLAEAGKRVLLLERGPALSFKEIP
                     RDHLRNQRLSIYGHNAGPALSGNPRVFVDPSGVSRIVKPHELDYHNNAACLGGGTRVY
                     GAQAWRFLPDDFRMASKYGIPKGSSLADWPISYETLEPFYERVEWELGAAGDGTTQTQ
                     TARRRDYPLPPVPPSPQTMALSN"
BASE COUNT          275 a          272 c          307 g          292 t
ORIGIN      
        1 ctgatacgcg tgcagactct tgggcctgac ggcgctggtt tacgccctta ttctgcgaac
       61 gtaatgctcc ataaccggag tgggaccttc actttgcctt tagccctcaa cgacgttccc
      121 ggaaagtaca cgattaaagc tactgatgtt gttacgggag catcgtttca gaagaccatt
      181 gaattgaaat aaccctgatg agacttgaaa ctttgcgtgc ggtcgttgac tgtctgatac
      241 caccggacga ttacgctgga gctttcgacg ctggcgtttg cgactttatc gttaggttgt
      301 ttgaaacgga tctggcagag caacgcgagt ttttcgatgc tggtctcgag gcgattgagt
      361 cagaggcgct ggcgaggttc gacactcggt tcgctgatct aagtccagat caacaggtcg
      421 tgattctcga aagtaccgag cgcggcagtg tcaacacacc atggccaata gcgcccgacc
      481 aatttttcga aatccttgtc aggacaacag ctgaaggtta ctacagtgat cccgaacaag
      541 gcgggaacag gggatctatc tcatgggcta tgacgggctt tcaagaggtt taagttgatg
      601 aatgattacg acgtaatcat tgtcggagct ggcgcagcgg gaggcattgt cgcctgtgtt
      661 ctggcagagg caggaaaacg tgttttgtta cttgaacgtg gcccagcctt aagttttaaa
      721 gagattccac gcgatcattt acgtaaccaa cgattatcta tttatggtca taatgctgga
      781 cctgctttaa gcgggaatcc tcgagtcttc gttgatccat ccggcgtttc aagaatcgta
      841 aagccacatg agcttgatta tcacaacaat gcggcttgtc tcggaggagg cacgcgagtg
      901 tatggtgccc aagcctggcg cttcttgccc gatgattttc gaatggcaag taagtacgga
      961 atcccgaaag gaagttctct cgccgactgg ccaatatcat atgagacact tgaaccgttt
     1021 tatgaaaggg tcgagtggga gttaggcgct gctggtgacg gcactacaca aactcaaact
     1081 gcgcgtcggc gcgattatcc gttgcctcca gtaccgccaa gtccacagac aatggcgctt
     1141 tccaat
//
LOCUS       DATCGC010001262         1278 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_150438, whole genome shotgun sequence.
ACCESSION   DATCGC010001262 DATCGC010000000
VERSION     DATCGC010001262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1278)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1278)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1278
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150438"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(349..>1278)
                     /locus_tag="VIJ87_12190"
     CDS             complement(349..>1278)
                     /locus_tag="VIJ87_12190"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY5445198.1"
                     /translation="NQFVPMLWSNPALGTRLLVAFDKGVRTIDGATGREIWNTKIAGI
                     PSAATLIGNEIYLVAEKADKLLILDSSTGQLKRQITLKDEAVGPPVFLNAGVQSQLLV
                     PLRGALIELCRLDGTYIRSFRMGTELTTQPIVLQTRRGPLLLIGLKNGLIAFDAVTVE
                     ALGRIAIEGNDYPVGSLNVVDLDGDKLQEVVITTKAGRVLAIDVADGKIRWQMDVGSV
                     SMPAFADLDGDTLPDVLVPGKNSLAVGLAGLTGSRIWDSGEETTVTKSPAGTRSVAVA
                     KVNDGRLIVVGNDQSAAGLRALEVPKASAKSNQ"
BASE COUNT          321 a          364 c          287 g          306 t
ORIGIN      
        1 gaatgagagg aaattcgcga ggactctacg cctgctcaaa atgaaccagt accctccatg
       61 gcaggggttt ggtcttaggt ttttgacctt aggttagagt gacggacgta ttggatccgc
      121 aacgtctttt tgttcaaaga ccaaaggcca aagacctaag accttttctc ggaagcttcc
      181 cgcgcgtttt ttgtcttcct ataagccatg acttgcacaa aaagaaatga agcacctgaa
      241 agcagaagaa gatgcaccca gcctcgttgg tgaacgacaa aacgcaatac gaaccaagtt
      301 actatgagtc ctacacccaa ccaccacaac atcgttacag aacactcctt actgattaga
      361 cttcgccgac gctttcggca cctcaagcgc gcgaaggccc gccgctgact ggtcattgcc
      421 gaccacaatc aaacgcccat cgtttacctt cgctaccgct actgaccgtg tgcctgcggg
      481 cgacttcgtt actgtggttt cttcgccgct gtcccaaata cgcgagcccg tcaagccagc
      541 aaggccaact gccaaactgt tcttgccagg cactagaaca tcgggcaacg tatctccatc
      601 gagatccgca aaggcaggca tcgagacgga gccgacatcc atctgccatc taatctttcc
      661 atcggccaca tcaatggcga gaactcgacc cgccttagtt gtgatcacta cttcctgaag
      721 tttatctccg tccaaatcca cgacgttcag cgatccaacc gggtaatcat ttccttctat
      781 tgcaatccgc cctagcgcct caactgtaac tgcgtcgaac gcaatcaaac cattcttcag
      841 tccaatcaag aggagtgggc cacgacgcgt ttgtaggaca attggttgcg tggtgagctc
      901 agttcccatg cgaaacgatc gaatgtaggt tccgtctaaa cggcacagtt caattaatgc
      961 tccacgcaaa ggcactaaca gttgcgactg aacaccggcg ttgagaaaga ctggtggacc
     1021 aacggcttcg tccttaagtg tgatttgtct ttttagttgg cctgttgagc tatctagaat
     1081 cagcagcttg tcagcctttt cagctaccag atagatctcg tttccgatta gggtagccgc
     1141 acttgggata ccggcaatct ttgtattcca aatctcgcgg cccgttgcac cgtcgatcgt
     1201 ccttacgccc ttatcaaacg ctacaagcag tctcgtgcct agcgcaggat tactccacaa
     1261 catggggacg aactggtt
//
LOCUS       DATCGC010001263         1578 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_250981, whole genome shotgun sequence.
ACCESSION   DATCGC010001263 DATCGC010000000
VERSION     DATCGC010001263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1578)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1578)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1578
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250981"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1578
                     /gene="murJ"
                     /locus_tag="VIJ87_12195"
     CDS             <1..>1578
                     /gene="murJ"
                     /locus_tag="VIJ87_12195"
                     /inference="COORDINATES: protein motif:HMM:TIGR01695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0034204 - lipid translocation [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HEY5445199.1"
                     /translation="GAASVEARVEQQPAKTQPSTGRSAFFVGAGILISRIVGLVRQRI
                     FAHYFGSSAVGDAFSAAFRIPNFLQNVFGEGALSASFIPVYAKLLAQDDEKEATRVAN
                     AIFGLLALITAVIVLIGVLATPYFVTAIAAGFQDERRELTIKLVRILFPGAGLLVLSA
                     WCLGVLNSHHKFFMSYTAPVAWNLAIISALVFFGNQVDLPRLAELTAWGSVIGSALQF
                     SVQLPTLLRLIHRFAPVLDLANPHVRQVVHNFFPVFMSRGVVQISAFVDAFLASFLGQ
                     GAVVALTYAQSLYTLPVSLFGMSVSAAELPTMARALGSADVVAETLRHRLDAGLHRIA
                     FFIVPSSMAFLALGDIIAAVLYQTGRFTHSDSNYVWAILAGSSVGLLASTLGRLYSST
                     YYALNDTKTPLRFAIIRVILTTGLGYLCSLPLPRALGIEPKWGVAGLTASAGIAGWVE
                     FVLLRLSLNRRIGKTGLSSSFVSKLWLGAGIGAAVGWGLKLLLGHRHPLIMAIVVLGG
                     YGVTYFGVTAAFGVGEA"
BASE COUNT          285 a          427 c          419 g          447 t
ORIGIN      
        1 ttggtgctgc atctgtcgaa gctcgagttg aacagcaacc ggcaaagacc caaccaagta
       61 ctggtcgatc cgcattcttc gttggcgccg gcatcctaat cagccgcatt gttggactgg
      121 ttcgtcaacg tatctttgca cactacttcg gtagttctgc ggtaggcgat gctttcagtg
      181 ccgccttcag aattcccaac tttctccaga acgtgtttgg tgaaggagca ctttccgcct
      241 ccttcattcc ggtctacgca aaactgcttg cgcaagatga tgagaaagaa gccactcgtg
      301 tagcgaacgc gatttttggt ttgctcgcac tcatcaccgc cgtgattgtt ttgattggtg
      361 tactggcaac accttacttc gtaaccgcca ttgccgccgg cttccaggac gaacgacgag
      421 aactcacgat caaactagtg agaattctct tccccggtgc agggctactc gtgctgtcgg
      481 cgtggtgtct cggggttttg aatagtcacc acaagttttt catgtcgtac accgcacctg
      541 tggcctggaa cctggcgatc attagtgcac tggtgttttt cggaaatcaa gtggacttgc
      601 cacggctcgc cgaactgacc gcctggggct ccgttattgg cagcgccctg cagttcagtg
      661 ttcaacttcc caccctgctt cgcttaattc atcgttttgc gccagtgctc gaccttgcga
      721 accctcacgt caggcaagtg gtacacaact tctttccagt gttcatgagt cgcggtgtgg
      781 tgcagataag cgcatttgtc gacgcctttc ttgcaagctt tctaggccag ggagctgttg
      841 tggctttgac gtacgcacaa agtctctaca ctcttccggt tagtcttttt ggaatgtcag
      901 tgtcggccgc tgaactgccc acgatggcgc gtgctttggg ttcagcagat gtcgtcgcag
      961 aaacacttcg tcatcggctc gatgccggtc ttcatcggat tgcttttttt attgttccgt
     1021 cgtcgatggc ctttcttgcc ttaggcgaca tcattgcggc tgttctctat caaacgggga
     1081 gattcacaca ttcggactcc aactatgttt gggcaatcct cgccggatca tcagtaggac
     1141 tgcttgcctc aactctgggt cgcctctatt cctcgactta ctacgcgttg aatgacacaa
     1201 agacgccgct tcggtttgcg attattcgcg tgatattgac gaccggcctt ggctacctct
     1261 gttccctccc gttacctcgg gccctgggca tcgaacccaa atggggagtt gccggtctga
     1321 ccgcctcggc gggtattgcg ggttgggttg aatttgtcct ccttcgactt tcattaaacc
     1381 ggcgcatcgg gaagaccggt ttaagttcat cgtttgtttc gaagctctgg cttggggctg
     1441 ggattggcgc ggcagttggc tggggactaa aactactttt gggtcatcga caccccttga
     1501 tcatggctat tgtcgtcctg ggtgggtacg gcgtcactta tttcggggtc acggcggcct
     1561 ttggggttgg cgaggcta
//
LOCUS       DATCGC010001264         1000 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_21660, whole genome shotgun sequence.
ACCESSION   DATCGC010001264 DATCGC010000000
VERSION     DATCGC010001264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1000
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21660"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1000
                     /locus_tag="VIJ87_12200"
     CDS             <1..>1000
                     /locus_tag="VIJ87_12200"
                     /inference="COORDINATES: protein motif:HMM:NF018449.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SBBP repeat-containing protein"
                     /protein_id="HEY5445200.1"
                     /translation="PKQATLQGTQDAFVTRFSPSGTALVYSTFLGGNSTDTGRAIAAD
                     STGNAYVTGETNSTNFPTTPGALQTNGSATQFIPDAFVTKIDATGQTFSYSTYLGGIE
                     RDAGNAIAVDSVGNAFVTGYTASSNFPIVSAIQPNFGGGSFTGDAFVTKLNSSGSGAI
                     YSTYLGGSGDDRAQGIAVDGTGNAYVTGATASNNFPIVAGAFKTLSPIFKSANGGSSW
                     NNNNGGVPPARDLVMNPNSLTLYAATTRGVYRSSDNGNTWSATNNGLTNLQTEVLALD
                     KQNPSTMYVGNGDVGVIFKSTDAGNTWSPANGNQNFPAVTAIETDPVTPNTVYLSSR"
BASE COUNT          259 a          265 c          239 g          237 t
ORIGIN      
        1 ccaaaacaag ctacgctaca aggtactcag gatgctttcg tcaccaggtt ctcgccatcg
       61 ggtactgcgc tggtctattc aaccttcctg ggtggcaact cgactgatac aggtcgcgcg
      121 attgcagccg actcgacggg aaacgcttac gttaccggag aaaccaactc aacgaacttt
      181 cccacaacgc cgggcgctct tcagacaaac ggttctgcaa ctcaatttat tcccgatgcg
      241 tttgtcacca agatagacgc aaccggtcaa acattctctt actcaactta tctgggtggg
      301 atagagcgtg atgccggcaa cgctatcgcc gtagactcag ttggaaacgc ttttgtaact
      361 ggctacaccg cttcgtctaa ctttcccatc gtaagcgcta tccaaccaaa tttcggaggg
      421 ggtagtttca cgggtgacgc attcgtaacg aagttgaact cgagtggttc aggggctatt
      481 tactcaacat atctcggagg ttccggagat gatagagcgc aggggattgc ggttgatgga
      541 accggtaacg cttacgttac gggcgctact gcgtctaaca actttccgat tgttgccggc
      601 gcttttaaga ccctaagtcc gatattcaaa tctgcaaacg gtggctccag ttggaacaac
      661 aacaatggag gggttccacc cgctcgggat ctcgtcatga atcccaattc gctgacactc
      721 tatgctgcta caaccagagg cgtttatcga agttcggaca atggcaacac ttggtcagct
      781 accaacaacg gactcacaaa ccttcaaacc gaagtgctcg ctctggataa acagaaccct
      841 tcaacgatgt atgttggcaa tggagatgta ggtgtgattt tcaaaagcac agatgctggt
      901 aatacctggt cacctgcaaa tggcaaccag aactttccag ctgttaccgc gattgaaaca
      961 gatcctgtca cgccgaacac tgtttacctg agcagccgaa
//
LOCUS       DATCGC010001265         1214 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_415852, whole genome shotgun sequence.
ACCESSION   DATCGC010001265 DATCGC010000000
VERSION     DATCGC010001265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1214)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1214)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1214
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_415852"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..564
                     /locus_tag="VIJ87_12205"
     CDS             <1..564
                     /locus_tag="VIJ87_12205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445201.1"
                     /translation="LRLATRQTHIGHCDPLTQEQNTPRLRRDSRGRVDVDSVPDVIEW
                     FLKFDQRVAIIKHPSVEEVFQWKQQYSRAQGEDVFAFKQAEDRLAIGIIQALADNPGE
                     RELHSWIGQLLNALETASKANESISESYKLDLQSGGSILKQADKIPYQRGRNEFLLNC
                     WIETLCTAEARVLGWLYKEFYGQPYAP"
     gene            572..>1214
                     /locus_tag="VIJ87_12210"
     CDS             572..>1214
                     /locus_tag="VIJ87_12210"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEY5445202.1"
                     /translation="MTPELRALFQITQRANYLNHAAVSPLPTPTIEAVQAQLQDVREN
                     GSLNYQDWIAVKEQARKLLANLLGAKPEQVAFMRNTSDGLSTIANGLKWKPGDNIVTF
                     SREFPSNIYPWLRLRNELGVEVRMCEEREGRIVFEELAELVDRSTRLITISHVQYASG
                     FRSDLERLGRLAREHDALLVVDVIQSLGVLPMSVESELVDAAAGAGHKWLMAPE"
BASE COUNT          313 a          299 c          312 g          290 t
ORIGIN      
        1 ctacgcttag cgacaagaca gacgcatatc ggacattgtg atccattgac tcaagaacaa
       61 aacactccgc gacttcggcg cgattctcga ggacgggttg acgtcgactc tgttcccgac
      121 gtgatcgaat ggtttctcaa attcgatcag cgcgttgcaa tcatcaaaca tccgtctgtg
      181 gaagaagtct ttcaatggaa gcaacaatac tctcgagcac aaggtgaaga cgtatttgct
      241 ttcaaacaag ccgaggatcg attggcaatt ggcataatcc aggcgctagc agacaatcct
      301 ggtgagcgcg agcttcactc ctggattgga caattactaa acgcgctgga aacggcttcg
      361 aaggcgaacg agtccatctc agagtcgtac aagctggatt tgcaaagcgg tggttcaatt
      421 ttgaaacaag cggacaaaat cccttaccag cgcggccgaa acgagtttct acttaattgc
      481 tggattgaga ccctgtgcac cgccgaggct cgtgtgctcg ggtggctcta caaagaattc
      541 tacggtcaac cttacgcacc ctaaatttac gatgacccca gaattacgcg ctctctttca
      601 gattacccaa cgcgcgaatt atctgaatca cgccgctgtc tcgccgcttc cgactcctac
      661 aattgaagca gtccaagctc aactccagga tgtcagggag aacggctcgc tgaactatca
      721 ggactggatt gcggtcaagg aacaggcccg caaacttcta gcgaatctgc ttggcgcaaa
      781 gccagagcaa gtagcgttca tgcgaaatac ttctgatgga ctttcgacaa ttgcaaacgg
      841 tctgaagtgg aagcctggcg acaacatcgt caccttctca cgcgagtttc catcaaacat
      901 ttatccatgg ttacggctac gaaatgagct tggcgttgaa gtgcgaatgt gtgaagaacg
      961 tgaaggtcga attgtctttg aagaactagc tgagctggtt gatcgatcga cacgtttgat
     1021 aactatcagc cacgtgcaat acgcctcagg atttcgttcc gatctggaac ggttaggccg
     1081 gttggctcgc gaacatgatg cattgctggt cgtcgatgta attcaatcac ttggtgtgtt
     1141 gccgatgagt gtcgagtcgg aacttgttga tgctgccgct ggtgcgggtc ataagtggct
     1201 gatggcaccg gaag
//
LOCUS       DATCGC010001266         1020 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_452481, whole genome shotgun sequence.
ACCESSION   DATCGC010001266 DATCGC010000000
VERSION     DATCGC010001266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1020)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1020
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_452481"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..934
                     /locus_tag="VIJ87_12215"
     CDS             <1..934
                     /locus_tag="VIJ87_12215"
                     /inference="COORDINATES: protein motif:HMM:NF018269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="di-heme oxidoredictase family protein"
                     /protein_id="HEY5445203.1"
                     /translation="PFFAHGGKISIREFVVGAFNDEMGLQAVDPEMMQAKNGGHVTTP
                     SGMVLDGSKDQLETPPTDDPQADPDGDGIVNEIPTSVVDFMEFYLLNYFKPGVYRQTN
                     ETEEGRRIFERVGCAQCHIPDLQINRDRRVADLDTIYDSQRGIFNNLFASAVPLFNAV
                     DDGSGFPALKLPKLQPFLVRNIFTDLKRHDVGAEFYERNYDGTMRTEFLTTPLWGVGS
                     TSPYGHDGRSINLSEVILRHGGEARDARRAFEQLPYRQQARMIEFLNSLILFPPDDTA
                     STLDPGNRNTFGFPQFGHGSIRLAALFNDPNDPE"
BASE COUNT          264 a          250 c          264 g          242 t
ORIGIN      
        1 accattcttc gcacacggcg gaaaaatctc aatccgcgag tttgtggttg gagctttcaa
       61 tgatgagatg ggtttgcagg cggttgatcc cgagatgatg caggccaaga acggcggtca
      121 cgttacaact ccgtcgggta tggtcctcga tggatcaaag gatcaattgg aaacaccacc
      181 taccgatgat ccacaagccg atcctgatgg cgatggcatt gtgaacgaga ttccgacgag
      241 tgtcgtcgac ttcatggagt tttacctact caattacttc aagcccggtg tctaccggca
      301 aacaaacgaa accgaggagg gccgcaggat ctttgaacgt gtcggatgcg cgcaatgcca
      361 cattcctgac cttcagatca accgcgatcg tcgtgtagcc gacctcgata ccatttacga
      421 ttcgcagcgc gggatcttca acaacttatt tgcgtcggca gttccgttat tcaatgccgt
      481 ggacgatggc agcggcttcc cggcactgaa attacctaag ctgcaaccat tcctggtcag
      541 aaatattttt actgatctta aacgtcacga tgtcggggca gaattttatg aacggaacta
      601 cgacgggacg atgcgtactg aatttcttac aacaccctta tggggagtgg gttcaacatc
      661 tccgtacggt catgacgggc gaagtatcaa cctttcggaa gttatcctaa ggcacggcgg
      721 agaagctcga gatgcaagac gtgcgtttga gcaacttccg tatcgacagc aggcacgaat
      781 gatcgagttt cttaattcac taatactttt cccgcccgat gacacagcgt cgacgctgga
      841 tcctggaaat cgaaatacat tcgggtttcc tcaattcgga cacggcagca taagactcgc
      901 agcgctgttc aacgatccaa atgatcctga gtagggcgaa ttgaattggc aagtgcaacg
      961 atattgtcga ttgcactcaa cataggcagg gatcggataa tgagagagtt ctggacggcg
//
LOCUS       DATCGC010001267         1308 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_185270, whole genome shotgun sequence.
ACCESSION   DATCGC010001267 DATCGC010000000
VERSION     DATCGC010001267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1308)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1308)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1308
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185270"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1308)
                     /locus_tag="VIJ87_12220"
     CDS             complement(<1..>1308)
                     /locus_tag="VIJ87_12220"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY5445204.1"
                     /translation="ERAAYWGWANIYTYTKSLGEQLVAAETNMVRSIVRPSIVESAMS
                     YPFPGWNEGFTTTAPIIFLIRKGQTLIPANEKLILDITPVDQVASVMLAVSAQACVEE
                     PRLVFQAATGDSNPNNMERIIGLVGLDKRRHFQQKETGTKLLNKIAARMEPRSVTTEY
                     YEKMSVPMFNATAKKASSLLEKMRPRWGGGRVGEVIDRVKESVERVEELTVKTTEAFD
                     MFRPFTIENAYIFRSDNVRSLFSRVSEDERSLLTWNPETFDWYNYWLNIHLPGLTKWV
                     FPTLEDEMRTQPKRVYTYRDLLELFETSTKRHATRVAMRIERDGRKEQYTYQDLRELA
                     NRVAGFLASNGIKSGDRVMLVSSNCPEWGMTYFGVLKTGATCIPCDPESSTSEILNFA
                     RAGNAAGIIVSQAIDQDHHDLREQLEAQGTTRLWTFDEVFVMPD"
BASE COUNT          294 a          341 c          336 g          337 t
ORIGIN      
        1 gtcaggcatt acgaagactt catcaaaggt ccaaagacgt gttgtgccct gggcttcgag
       61 ttgctcgcgc aaatcgtggt ggtcctggtc aattgcttgg ctgacgatga ttccagcggc
      121 attaccggca cgtgcgaaat tcaaaatctc gctggtagaa ctttcagggt cacagggaat
      181 acaagtagct cccgtcttaa gtactccgaa gtaggtcatt ccccattcgg gacaattact
      241 gctaacgagc atcacccgat caccagactt aatcccatta cttgccagga atcccgcaac
      301 acgattagcg agttcacgca gatcctggta ggtgtattgt tcctttcgtc cgtcgcgttc
      361 aatgcgcatt gcgacgcggg tcgcatgacg cttagtagac gtctcgaaga gttcgagaag
      421 atcgcgatac gtgtaaacgc gctttggctg cgttcgcatc tcgtcttcga gtgtggggaa
      481 gacccattta gtcagaccgg gaaggtgaat gttgagccag tagttgtacc agtcaaaagt
      541 ctcgggattc caggtgagta aggagcgctc gtcttcactg acacgggaaa acagtgaacg
      601 aacattgtca gatcgaaaga tgtaggcgtt ctcgatcgta aacggtcgaa acatgtcgaa
      661 ggcttcggtt gtttttacag tgagttcctc aacccgctcg acgctctcct taacgcgatc
      721 tattacttca ccaacgcgtc caccgcccca acgcggtcgc atcttttcga gcaatgaaga
      781 cgccttcttc gccgtcgcat tgaacatcgg gacggacatc ttctcgtagt actcggtagt
      841 gaccgagcgc ggttccattc tcgccgcaat cttgttcagg agttttgtcc cggtttcttt
      901 ctgttgaaaa tggcgccgtt tatccagtcc caccaatcct atgattcgtt ccatgttgtt
      961 tggattcgaa tcaccggtcg ctgcctggaa gaccagtcgt ggttcttcga cgcatgcctg
     1021 tgcggatacg gccagcatca ctgacgcaac ttgatcaacc ggtgtgatat cgagaataag
     1081 cttctcgttt gcgggaatga gagtctgccc ttttctaatc aggaaaatga ttggggcagt
     1141 tgtcgtgaag ccttcattcc aaccgggaaa cggataggac atcgcagact cgacgatgct
     1201 tggtcgcacg atactgcgaa ccatgtttgt ctctgcggcg actagttgtt caccgagcga
     1261 cttggtgtac gtgtaaatgt ttgcccaacc ccaatacgcc gcccgctc
//
LOCUS       DATCGC010001268         1240 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_251039, whole genome shotgun sequence.
ACCESSION   DATCGC010001268 DATCGC010000000
VERSION     DATCGC010001268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1240)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1240)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1240
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251039"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(90..>1240)
                     /locus_tag="VIJ87_12225"
     CDS             complement(90..>1240)
                     /locus_tag="VIJ87_12225"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY5445205.1"
                     /translation="ASIPGRGHSSPIVWGNRIFLTTAIEGEVVPGAKAVKHMDGDKEF
                     IHPDSVGADHKHQFKVVCIDRGTGKIVWSQTAFEGTPFDDRHRKSSFASSTPTTDGNY
                     VYAFFGSEGLYAYDMNGKLAWKADLGKLATFGMGTGTSPVLYQNLVIIQCDEENGTAS
                     FVIGIDKKSGKEVWRTPRKVQASWSTPLLVQTAKRAELITSGNEFVISYDPKTGKELW
                     RHKGVDSNAIPSPVANDNLVFISAGFPAKIAMAITLGGNGDLSDAVVWKYAKGTAYVP
                     SPILYGDYLYLTSDRGVLTCIDAKTGEVKYEGGRVPIPASFTASPVAFDGKILLTSED
                     GDTFVVKAGPKHEILGTNSVGEPVYASPAVADGNIFIRGERNLYCIGS"
BASE COUNT          302 a          340 c          281 g          317 t
ORIGIN      
        1 aggtaacaca gagattctag attgggtcac gacccaaatg atgatgcctt actaaactta
       61 gacgcaccca gcatcaaaat gttccagcct caactcccaa tgcaatagag gtttctttcg
      121 ccacggataa aaatgttgcc atccgccaca gccggagacg cgtagactgg ttctcctaca
      181 gagtttgttc caagtatctc gtgtttcgga ccggctttga ctacgaaggt gtctccatct
      241 tcactcgtca ggagtatctt tccatcgaag gccacaggcg aagctgtgaa acttgcagga
      301 atcggcacgc gaccaccttc gtactttacc tctcccgtct tcgcatcgat acacgtcaac
      361 acaccccgat cggaagtcag atacaaatag tctccgtaaa gaatgggtga cggcacgtag
      421 gcagttccct tcgcatattt ccaaaccacc gcatccgaca ggtcaccgtt gccgccgagt
      481 gtgattgcca tagctatctt ggccggaaag ccggctgaga tgaaaacgag attgtcattc
      541 gcgactggtg aaggaatggc gttgctatcg acccccttgt gacgccacaa ctctttgccg
      601 gttttgggat cgtacgaaat aacaaactcg ttgccactcg tgatcaattc agcgcgcttt
      661 gcagtttgaa ccaatagtgg cgttgaccaa ctcgcctgta cttttcgcgg tgttcgccac
      721 acttcttttc cgctcttctt atcgattcca atcacaaacg acgcagtacc gttctcttcg
      781 tcacattgga ttatcactag gttttgataa agaactggtg acgttccagt ccccatacca
      841 aaggtcgcta actttccaag atcggccttc cacgccaact taccattcat gtcatacgcg
      901 tacagtcctt cagatccgaa gaacgcgtag acatagtttc cgtcggtagt tggtgttgac
      961 gaagcaaaag aactctttcg atgacgatca tcgaagggcg ttccttcaaa ggctgtttgt
     1021 gaccagacaa ttttgccggt tccgcgatca atgcagacga ctttgaactg gtgtttatga
     1081 tcggcgccca cgctatctgg atggataaac tccttatcgc cgtccatgtg cttcacggct
     1141 ttggcgccag gaaccacttc gccttcaatg gctgttgtca gaaagatccg attaccccaa
     1201 acgattggtg aagaatgacc gcgcccggga atcgaggctt
//
LOCUS       DATCGC010001269         1812 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_251041, whole genome shotgun sequence.
ACCESSION   DATCGC010001269 DATCGC010000000
VERSION     DATCGC010001269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1812)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1812)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1812
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251041"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..429
                     /locus_tag="VIJ87_12230"
     CDS             <1..429
                     /locus_tag="VIJ87_12230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445206.1"
                     /translation="PVYVYGWSLGAGFAICVGADVPTRANWAGIISIGLPKQNQLVSG
                     VSGNHANLKVEGNAIYGFRSADVLARITPLPLVMIQSTSDTASPQKVGRELFAGANDP
                     KKYVLIKASNHRFSGARDEFYTALTDAVSWMRESAKNGKP"
     gene            453..1391
                     /locus_tag="VIJ87_12235"
     CDS             453..1391
                     /locus_tag="VIJ87_12235"
                     /inference="COORDINATES: protein motif:HMM:NF017835.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcvB/VirJ family lysyl-phosphatidylglycerol
                     hydrolase"
                     /protein_id="HEY5445207.1"
                     /translation="MLQNLCAVLHHAANRIGKLRNLGFHPWLLVALVPFVCLCAGSAY
                     ALVWYHRFYHHVTPQELSHEVKHSSLRATIHGSLPVTLQVYQQENASNQPLVLFTSGD
                     GGWSPFSANIAAHIAATGKTVVGFDVKDYLVHAANSQKPISAEELGQDYRAIAQVSAA
                     QPGVDSKARLILAGWSLGAGYSVLVASQPQFVDHVDRVVAISPPTYNELAWKPTDALI
                     YFTHGTPREKVFDARQYVRKLDLTPLFIINATDDDTSPLNEAKDIFEAAPASKHLYTV
                     KANGHHFEGGEAEFYRDLDNGLSLRTTESNSLVRAN"
     gene            complement(1415..1618)
                     /locus_tag="VIJ87_12240"
     CDS             complement(1415..1618)
                     /locus_tag="VIJ87_12240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445208.1"
                     /translation="MSSHPNLVLSLGRFEQYIPYHRDEIRPQFGKPLKRFPALSRTRD
                     PELKLGENEREFDLFDRQVAVAT"
BASE COUNT          440 a          470 c          475 g          427 t
ORIGIN      
        1 cccgtttatg tttatggctg gtcacttggc gccggttttg caatctgcgt cggtgccgat
       61 gtaccgacgc gcgcgaactg ggctggaatc atttcaatcg gattaccaaa acaaaaccaa
      121 ctcgtaagtg gtgtcagcgg aaaccatgcg aacctgaagg tagaagggaa cgcgatctac
      181 ggcttccgca gtgcagatgt gctggcacgc atcacaccgc tgccactggt tatgattcag
      241 agtacgtctg acacagccag cccgcaaaaa gtcggaaggg agttatttgc cggggctaat
      301 gatccgaaga aatatgtgct aatcaaagcg agtaatcacc gcttcagtgg cgcgcgtgat
      361 gagttctata cagccttgac cgacgcggtg tcctggatgc gagaatccgc taagaatggg
      421 aagccatgag tggctgtttg aaggcgtccg atatgctgca aaatctctgc gctgtccttc
      481 atcatgcggc gaatagaatt gggaagctac gcaatctcgg atttcatccg tggcttcttg
      541 tagcgctggt tcctttcgtt tgtttgtgtg caggttcagc ttacgcactg gtctggtatc
      601 acaggtttta tcaccacgta acaccccagg aattgtcgca cgaagtgaag cattcctcgc
      661 ttcgggccac tattcatgga agcttgcccg ttactttgca ggtctaccaa caagagaacg
      721 cttcgaatca accgcttgta ctgtttacga gtggtgacgg cggctggagt ccatttagcg
      781 caaacatcgc ggcacacatt gcggcaacag gaaaaacagt cgtgggattc gacgtgaaag
      841 actatttggt ccatgctgca aattctcaga agccaatttc tgccgaggaa cttgggcagg
      901 attacagggc aatcgcccag gtttctgccg cccaaccagg cgtggacagc aaggctcgtt
      961 tgatcctggc gggttggtca ctcggcgcgg gttacagcgt gctagtggca tcccaaccgc
     1021 agttcgttga tcacgtcgat cgagtcgtcg ctatcagtcc accgacgtat aacgagttgg
     1081 cgtggaaacc gactgacgcg ctcatctact tcactcacgg gacgccgcgc gaaaaagtct
     1141 tcgacgctcg gcaatacgtt agaaaacttg atctgacccc tctcttcata atcaacgcga
     1201 cggacgacga tacttctccc ctcaatgaag caaaggatat cttcgaggcg gcaccagctt
     1261 caaagcacct gtacaccgtc aaggccaatg gtcatcattt cgagggtggt gaagcggaat
     1321 tttatcgaga tctggacaac gggctatcgc ttagaaccac tgaatccaac tcccttgtcc
     1381 gcgctaactg atcattaaag gcaagggcca accttcaggt tgcaaccgca acttggcgat
     1441 caaagagatc aaactccctc tcattctccc cgagcttcag ctcggggtca cgagtgcgac
     1501 taagtgctgg gaaccgtttt aacggtttac caaactgcgg tctaatttcg tctcgatgat
     1561 aggggatgta ctgttcgaaa cgtccgaggg ataacacgag atttggatga ctcgacatgg
     1621 ttagcgttct tgctcgcaat tggaaaccgt tgaaacggtt ccgcgatccc aaacgcaccc
     1681 ggaccccgag ctgaagctcg gggagaatgg gatggagttt tgcaaaagaa cctaatgatc
     1741 ggtgcctgcc gattgcttat cttgacccct cttatgttcg acaggtcgaa cacgtaacac
     1801 tcactgaatt ca
//
LOCUS       DATCGC010001270         1425 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_21694, whole genome shotgun sequence.
ACCESSION   DATCGC010001270 DATCGC010000000
VERSION     DATCGC010001270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1425)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1425)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1425
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21694"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..267)
                     /locus_tag="VIJ87_12245"
     CDS             complement(<1..267)
                     /locus_tag="VIJ87_12245"
                     /inference="COORDINATES: protein motif:HMM:NF025001.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY5445209.1"
                     /translation="MRLVIAIANQKGGVGKTTTAINLAAAFARLGKRVLLLDLDPQAN
                     SSISFLDPLTVERSVYELMMDGQAPIEESVYRTPVENLELVPARI"
     gene            complement(337..828)
                     /locus_tag="VIJ87_12250"
     CDS             complement(337..828)
                     /locus_tag="VIJ87_12250"
                     /inference="COORDINATES: protein motif:HMM:NF014618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional nuclease family protein"
                     /protein_id="HEY5445210.1"
                     /translation="MEIEVKIRALMMDPNSGTPIIILKDVQSDTMLPIWVGAYEANAI
                     ALEIEKISPPRPMTHDLLRNLITELGVQVERVVVTSLRDNTFFAVIEMRNNEGDRMVL
                     DSRPSDAIALALRADCPIYVDMDVIKASRNTMPTEEGDESELPASEEEWPDVIGEAGD
                     LPM"
     gene            complement(839..>1425)
                     /locus_tag="VIJ87_12255"
     CDS             complement(839..>1425)
                     /locus_tag="VIJ87_12255"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY5445211.1"
                     /translation="EENENLCDWIHLPDQSGSDRVLRLMRRGHTRADYLQRIERIKNS
                     KRPLALTSDVIVGFPGETDEDFQQTLSLVEQCDYDSLYIFKYSKRRGTPAANFEDTIS
                     EAEKTERFLELEKAHRKAQERVYRSYVGRTLSVLVERSSSRSESDLMGHSTCHKVVNF
                     AAGNHIAGDIVDVFITATKTNSLYGTLADRSAVA"
BASE COUNT          324 a          384 c          333 g          384 t
ORIGIN      
        1 aattcgcgcc ggcacgagtt cgaggttctc aacaggcgtc cggtaaaccg actcctcgat
       61 gggcgcctgg ccgtccatca tcagttcgta gacactgcgc tcgacagtta atggatcaag
      121 gaatgagatc gaactatttg cttgtggatc gagatcgaga agaaggacac gctttccaag
      181 gcgagcaaat gcggcagcca ggttgatcgc ggtggtagtt ttccctaccc cgcctttttg
      241 atttgcgatg gcgattacca gtcgcacagt ggcaaactcg cgctccgggg tttcgttaac
      301 tccaacaggc cttcgataat ctgctcgttc atctcactac attggaagat cgccggcctc
      361 accaataacg tcgggccact cttcttcgct tgctggaagc tcactttcgt cgccctcttc
      421 cgttggcatt gtatttcgtg aagctttaat aacatccata tcgacgtaaa tcgggcagtc
      481 ggccctgagc gccaacgcaa tcgcgtcgga cggtcttgaa tcgagcacca ttcgatcgcc
      541 ttcgttattt cgcatttcga tcacagcaaa aaaggtgttg tctcgcaaac tcgttactac
      601 cactcgttcc acttgaactc ccaattccgt tatcaggttc cgtagaagat catgtgtcat
      661 aggtcgcggt ggtgagattt tttcaatctc aagcgcgatg gcattcgctt cataagctcc
      721 cacccagatt gggagcatcg tatcactctg aacatctttc aaaatgataa tcggcgttcc
      781 gctgttgggg tccatcatta gtgcccggat ctttacttcg atttccatac cgtacccctt
      841 aagctaccgc ggagcgatcc gccagagtgc cgtagagact gttggtcttg gtcgctgtaa
      901 taaacacgtc aacgatatcg cccgcgatat gattccccgc tgcaaagtta acgaccttat
      961 gacaagttga atgtcccatt agatcagatt ctgagcgtga acttgacctt tcgacaagca
     1021 cgctgagcgt gcgaccaaca taagatctgt aaactcgctc ctgcgccttg cgatgtgctt
     1081 tttcaagttc caaaaagcgc tcagtctttt ccgcctccga gattgtatcc tcaaaattgg
     1141 cggcgggtgt gcctcgtcgc tttgaatact tgaaaatgta aaggctgtcg taatcacact
     1201 gttccacgag actaagcgtc tgctggaagt cttcatccgt ttcacctggg aagccgacga
     1261 tgacatcact ggtgagtgcg agtggacgtt ttgagttctt gatgcgttca attctttgaa
     1321 gataatcggc ccgcgtatgt ccacgtctca ttaacctcaa tacgcgatcg ctgcccgatt
     1381 ggtcaggcaa gtgaatccaa tcacacaagt tctcattctc ttcga
//
LOCUS       DATCGC010001271         1088 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_185287, whole genome shotgun sequence.
ACCESSION   DATCGC010001271 DATCGC010000000
VERSION     DATCGC010001271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1088)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1088)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1088
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185287"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..222)
                     /locus_tag="VIJ87_12260"
     CDS             complement(<1..222)
                     /locus_tag="VIJ87_12260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445212.1"
                     /translation="MSENKQTNVDANSPEFMRGVEAGLNSEDTKYWQAGYELGQGLSG
                     KETKEPVQEIIQKEFETPLFLKDTLDGQKG"
     gene            complement(338..736)
                     /locus_tag="VIJ87_12265"
     CDS             complement(338..736)
                     /locus_tag="VIJ87_12265"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5445213.1"
                     /translation="MIRETNTPQIILVVEDVQETRDGIEKLLNADGYVVAVARDERDG
                     IQSARHQRPDLILVSLAGLPREVITAARRIRERAEVGENVPIVVFCIEEIGEGEELAI
                     GQNVHVTRPDNFNQLRSLLTRLLQQIPIAA"
     gene            complement(894..>1088)
                     /locus_tag="VIJ87_12270"
     CDS             complement(894..>1088)
                     /locus_tag="VIJ87_12270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445214.1"
                     /translation="QRAADISVDHPLVLENYRTAHEIAFRQTKGQANTEDLRQAMIHY
                     RTLFEELVGEPELVRAKTAA"
BASE COUNT          234 a          301 c          250 g          303 t
ORIGIN      
        1 acccttttga ccgtccaaag tatctttgag aaatagtgga gtttcgaatt ccttctggat
       61 tatttcttgg accggttctt tggtctcttt gccgctcaaa ccttgaccga gttcataacc
      121 ggcttgccag tacttcgtgt cttcagaatt gagtccagct tcaactcctc gcatgaactc
      181 tggcgaattt gcatccacat tggtttgttt gttctcgctc atagtagtct cctttgaatt
      241 aattagatcc tgcaaaaaat gaaacagagt ctacgtgtcc tggtgttgcc attcattggt
      301 ctaccgtagc gctgatcgag ttcgaattat ttctacctca agccgcaatt ggaatctgtt
      361 gcagcagacg agtgagaagg ctcctcaatt gattgaagtt gtccggccga gtgacatgca
      421 cattttgacc gatcgcgagt tcctcgccct caccaatctc ttcgatgcag aagaccacaa
      481 tgggcacatt ctctccaacc tccgcacgtt cacggatacg acgcgcggca gttattacct
      541 cgcgcggtaa cccggccagg ctcaccagaa tcagatcggg acgctggtgc cgggcgctct
      601 gtatcccgtc tcgctcgtct ctggctaccg ctacgacata gccatcagca ttcaagagct
      661 tttcaatgcc gtcacgggtc tcttgaacat cctccactac caggatgatc tggggagtgt
      721 tagtttctct aatcattaaa gtttctggtt catccttcga tttgcgtcgg atcaatgtct
      781 gacataagga ctcggatagt acgctgagca acactgacga gccttgatag cctcgccagc
      841 ctcagaagtt gcattacacg aatacccccg agtgttgacg tcaatctcag cgttcaggcc
      901 gcagtcttcg cacggaccaa ctctggctcg ccaaccaatt cctcgaaaag tgtccggtag
      961 tgaatcattg cctggcgcag atcttctgtg ttggcttgcc cctttgtttg acggaacgct
     1021 atttcgtgtg ccgtccggta attctcgagc accaacggat ggtccacgga gatatctgcc
     1081 gcccgctg
//
LOCUS       DATCGC010001272         2264 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_319733, whole genome shotgun sequence.
ACCESSION   DATCGC010001272 DATCGC010000000
VERSION     DATCGC010001272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2264)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2264)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2264
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_319733"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..982
                     /locus_tag="VIJ87_12275"
     CDS             <1..982
                     /locus_tag="VIJ87_12275"
                     /inference="COORDINATES: protein motif:HMM:NF013259.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445215.1"
                     /translation="RLFDLHRSLKQIDAAEEGVGTVVDVTTCPGSDTCRLGIASAKGL
                     GTAISDSFDNGMADYRELARDLKIKVSGCPNGCAQHTVANIGFHAAALSHDGHTVPAY
                     LISLGGQTEPGSAQIAQLVGKFPARNCTQVIKTLLRLYRDEKNAEESFNEFVERVGER
                     RIQNLLEPWRQVPEFADDSSFYDDYGHENERFAIRPQGVKGECAGSTVAESVPTMERS
                     RELLAQGDAFFYHHEYAHVLLVAYEAAAAAARVPLYQRLVDPFTDDEALWEFENLFVL
                     SGQTQGEWQELSSRFVELQGYSPTETAANTLLIKARSFVDYCDKFVPPPA"
     gene            complement(979..1926)
                     /locus_tag="VIJ87_12280"
     CDS             complement(979..1926)
                     /locus_tag="VIJ87_12280"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEY5445216.1"
                     /translation="MEFQQLEMFAAVVEEGSISQAAQRVCRTGAAVSIALKKLEEEMV
                     TPLFERGDRNSHQLTASGRSLYEHARRILDLRREAETAVKRSSHDLTLRIGTHESTSL
                     YLLPSLMARLSETHPAIKPEIICGNADKLLLALANRAIELALIGDAPTDTELNTYILR
                     REELVVIAKPNHRLARRQPISLKDLRDEYLIVQGTKSLLRERIVQALRASKIPFNFGV
                     ENVGIEAIKRMVINGLGVGFVPTMCVSEEVVNGELVALKVADLRTDWNISLVWRKDHS
                     LSRIAREFVDIIKPSREAATTMVNSRRIDPNRSRKVIHC"
BASE COUNT          513 a          571 c          579 g          601 t
ORIGIN      
        1 cagattgttc gacctgcatc gttcactaaa acaaattgac gctgccgaag aaggtgtggg
       61 aacggttgtt gatgtaacta cttgtccggg ttctgacact tgtcgtctcg gtatcgcctc
      121 ggccaaaggt ctcggcacgg caatctctga ttcctttgat aacggcatgg cagattatcg
      181 tgagctggcc cgagatctaa aaatcaaggt ctccggctgt ccgaatggtt gtgctcaaca
      241 cacggtggcc aacattgggt ttcatgcggc ggcgctttcg cacgacggtc acaccgtgcc
      301 tgcatacttg atctcattgg gcggtcagac tgaacccggt tctgcacaga tagctcaact
      361 cgtgggaaag tttccggcca ggaattgcac ccaggtaatt aagacgctgc tgcgtttgta
      421 tcgagatgag aagaacgcgg aggagtcatt taatgagttt gtcgagcgag tcggtgaaag
      481 gcgaatccaa aacttgttgg agccttggcg tcaagtccct gagttcgcgg atgactcgag
      541 tttctatgac gactacggac atgaaaacga acggtttgcc attcgtcccc agggagtaaa
      601 gggtgagtgt gccggctcga ccgtagcgga aagcgttcca acgatggagc ggtcgcggga
      661 attgcttgct caaggagacg cgttcttcta tcaccacgaa tacgcacacg tgcttctggt
      721 tgcttatgag gcagcggcag ccgctgcacg tgtgcctctc taccagcgtc tggttgatcc
      781 tttcacggac gatgaagcgt tgtgggagtt tgagaactta ttcgtcttgt cgggtcagac
      841 tcagggagag tggcaagagt tatcttctcg cttcgttgag ctccagggtt acagtccgac
      901 tgaaacggcc gctaatactc ttctgatcaa agctcggtct ttcgtagact attgcgacaa
      961 attcgtcccg cctcctgctt aacagtgaat caccttacgt gaacggtttg gatcaatcct
     1021 gcgactgttt accattgtcg ttgctgcttc tcgtgaaggc ttaatgatgt cgacaaactc
     1081 tcgggcgata cgtgagaggg aatgatcttt tcgccacacc aaagagatgt tccagtccgt
     1141 ccgaagatca gcgactttaa gagccactaa ttctccattc actacctctt cgctcacgca
     1201 catcgttgga acaaaaccaa cgccgagtcc attaatcacc atgcgcttaa ttgcttctat
     1261 gccgacgttc tctacgccga agttgaacgg gatcttggac gcgcgaagtg cctgaacaat
     1321 tctctctcgc aacagtgatt tggttccctg gacaataaga tattcgtcgc gaagatcctt
     1381 aaggcttatg ggttgacgcc ttgccaagcg atggtttggt tttgcaatta caaccaactc
     1441 ctctctcctg agtatataag tgttcaattc ggtatcggtt ggcgcatcgc caatcagtgc
     1501 cagttctatt gcgcgattcg ctaacgcgag tagtaacttg tctgcattcc cgcagatgat
     1561 ttccggttta attgcgggat gggtctcgct aaggcgtgcc attaaagagg gcaacaagta
     1621 taggctcgtg ctttcgtgtg ttccgatgcg gagcgtcagg tcatgtgacg agcgcttcac
     1681 cgcagtctca gcttcacgac gcaagtcgag gattcgtctt gcgtgttcat acaacgacct
     1741 gccagacgct gtgagttggt gactatttcg gtcacctctc tcaaacagag gcgtgaccat
     1801 ctcttcttcc aatttcttga gcgcaatgct tacggcagct cccgttcggc agacgcgctg
     1861 tgcagcctgg gatatgcttc cttcttccac cactgccgcg aacatctcta gttgttgaaa
     1921 ctccatgggt tcctcactgt tcacttcggt aaaactaaaa aggtcgtcat cctcggtgga
     1981 tgacgacctt gttgaccaaa tacagtttgg ctaagtcgtc atcctccggg catacatgta
     2041 caagccttct tggaggtgac cgacgttcca aaaaaatgaa tgtttgagcc gagtagggag
     2101 tacataagcc taaaatgcca aagcaaccga ttaagtgact aatgttggct gatcaggcca
     2161 acatagtact gcgtgtggtc gttgagttca acagaatttg cgaattcgtg tctcggccct
     2221 actttttgat tccttccgtc tttgacgcac ctcaacccaa ggtc
//
LOCUS       DATCGC010001273         1533 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_21734, whole genome shotgun sequence.
ACCESSION   DATCGC010001273 DATCGC010000000
VERSION     DATCGC010001273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1533)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1533
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21734"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            319..885
                     /gene="hpt"
                     /locus_tag="VIJ87_12285"
     CDS             319..885
                     /gene="hpt"
                     /locus_tag="VIJ87_12285"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016292428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006166 - purine ribonucleoside salvage
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HEY5445217.1"
                     /translation="MATSSTQLMSEFSNPNIAILISEEQIRDRIKELGSQITRDYAGK
                     NPLLIGVLKGACFFLSDLLRAVDTRLSIEFMAISSYGSSTRTSGEVRIMKDLDVPIEG
                     RDILVIEDIVDTGLTLSYLLANLESRGAASVKLAALLDKFERREKEVKIDYLGFQIPD
                     EFVVGYGLDFAERYRNLPYIGVLKDPAA"
     gene            1065..>1533
                     /locus_tag="VIJ87_12290"
     CDS             1065..>1533
                     /locus_tag="VIJ87_12290"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY5445218.1"
                     /translation="MRTILIIVLLLAFPVLAIAQDDFSKVEIKATKVSGNVYMLEGSG
                     GNIGVSVGVDGILIVDDEFAPLAEKIKAALKTLGEGKLKFILNTHWHADHTGGNAPLG
                     KEATIIAHDNVRKRLSTEQRLEFFKQTVPASPSEAWPVVTFDQSLSVHFNGEEI"
BASE COUNT          402 a          378 c          391 g          362 t
ORIGIN      
        1 tgctcgaggc agtaatcaac agaactagtg aaagaagagc ggtgcgacaa atccgattgt
       61 gcacaaacac atcccgcatt actgttttat ctccgtcgtt ttcgctgctg agcattgacc
      121 taaagggaag agcttgaata gtatgtcgca ccatacggca catacgcaaa cgacaagatt
      181 ttttccaaat cactcgtcaa gtagtcagta ccacaacgcg gtagcgtgtg gctgacgccg
      241 agggttagag gcatgaaatt ctaaaaaggc acacgctacc gcgttgtggt actgacctta
      301 cccctaagga gaaatacgtt ggctacctcg tctactcagc tcatgtccga gtttagtaat
      361 ccaaacattg ctatcctcat ttctgaagag caaattcgcg accggatcaa agaactgggg
      421 tctcagatca ctcgagatta tgcaggtaaa aatcccctgc tcattggtgt gttgaagggt
      481 gcatgttttt tccttagcga tttgctacgc gccgtcgaca cccgattgag tatagagttc
      541 atggctatct caagttatgg ctcgtcgacc aggacctcag gcgaagtgcg aatcatgaag
      601 gacctcgacg ttcctattga aggacgcgac atactggtca ttgaagacat tgtcgacaca
      661 ggactcacac tgtcgtacct gttggcaaac ttggaatcgc gtggcgctgc gagcgtgaaa
      721 ctggctgcgc tgctcgacaa gttcgaacgc cgcgaaaaag aagtcaagat cgattatctg
      781 ggctttcaga taccggatga atttgtcgtt ggctacggat tggatttcgc ggaacgctat
      841 cggaaccttc cgtatatcgg cgtgttgaag gatcccgcag cgtaggtgat gccccgaggc
      901 gccggtgcgg tagcccgact gtcaaggagg gctcaatgag ggtagttgtt gcccagccag
      961 agccctcttt gacagtcggc tactgcaccg gcgcctcgtg gtattgaatt gatcctcacg
     1021 tagagttcgc ttactaaaat cgctggcaag tgcggaggaa taacatgaga acaattctca
     1081 tcatcgttct acttctggct tttcctgttc tcgcgatcgc tcaggacgac ttttcaaagg
     1141 tcgagatcaa agccacaaaa gttagcggca acgtctacat gctcgaaggc tcaggtggaa
     1201 acatcggagt ctccgtcgga gttgacggaa ttttgatcgt ggacgatgag ttcgctccgc
     1261 ttgctgaaaa gatcaaagca gcactcaaga ccctgggcga aggcaaactc aagtttattc
     1321 tcaatacaca ctggcacgct gaccatactg gtggaaacgc gccactcggg aaagaagcaa
     1381 cgatcatcgc gcacgacaac gttagaaaac gtctttcgac cgaacaacga ttggaattct
     1441 tcaaacaaac tgtgccggct tcaccgagcg aggcgtggcc tgtagtaacc ttcgatcagt
     1501 ccctgtcagt acatttcaac ggcgaagaaa taa
//
LOCUS       DATCGC010001274         1164 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_21741, whole genome shotgun sequence.
ACCESSION   DATCGC010001274 DATCGC010000000
VERSION     DATCGC010001274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1164)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1164)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1164
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21741"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..524
                     /locus_tag="VIJ87_12295"
     CDS             <1..524
                     /locus_tag="VIJ87_12295"
                     /inference="COORDINATES: protein motif:HMM:NF016165.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transferrin receptor-like dimerization
                     domain-containing protein"
                     /protein_id="HEY5445219.1"
                     /translation="FVYHVAAAQIWGTLALRIADADALPFDYTDYATQIREFFAEALR
                     LAKQKNLDTSFDDRSMNAALEDFAKECSRVEKNRQEAVTTKANSAKLKLINDALIAVE
                     REFIDERGLRGRPWYKHEIYAPGIYTGYAAQPLTDFRQAIDDRNSANTKESLERIVEA
                     IKRATKALQLARD"
     gene            556..>1164
                     /locus_tag="VIJ87_12300"
     CDS             556..>1164
                     /locus_tag="VIJ87_12300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445220.1"
                     /translation="MKTRISILNITLVIGLLLVSVSAFVARQRTTVSNDFKVKYKTTM
                     GSSAGAAAGGETVTMIKGARERSENHTGYGYDTVNITQCDLKRTIQLSDTSKKYIITP
                     METVEPSAPTTPSSRPPAPSTPSTRGGVVDYFNSIVDTGERKQMFGFNARHVKSATVI
                     TASADSCSPGKRRIELDGWYVDLNVEFNCETNKTPKVPTERAP"
BASE COUNT          330 a          282 c          301 g          251 t
ORIGIN      
        1 gttttgttta ccacgttgct gcggctcaga tctggggcac gttggcgttg cgtattgccg
       61 acgcggacgc cctgccgttt gactacactg actacgcgac tcaaattcgc gagtttttcg
      121 cagaggcttt gcgactggca aagcagaaga acctggatac ttcgtttgac gatcgatcaa
      181 tgaacgcagc actggaagac tttgccaaag aatgctcgcg ggttgaaaag aacagacagg
      241 aagcggttac caccaaagcg aacagtgcga aactcaaact catcaacgat gcgctgatcg
      301 cagttgagcg agagttcata gacgaacgag gtctccgtgg aaggccgtgg tacaaacacg
      361 aaatctatgc gcccggtatt tacacgggtt acgctgcaca accattgacc gattttcgcc
      421 aagcaataga tgataggaat tcggcgaaca ctaaagaatc gcttgaaaga attgtggaag
      481 cgatcaagag agctaccaag gcgttgcaac tcgcgcgcga ttaacaatta aaagaacaca
      541 cctgggagga tatcaatgaa aactcggatt tccattctaa acatcacgct ggttatcgga
      601 cttcttttgg tttcagtctc cgcctttgtt gcgcgacaaa gaaccactgt gtcgaatgat
      661 tttaaagtca aatataagac gacgatgggt agctccgccg gagcagctgc aggcggggaa
      721 accgtaacga tgattaaggg agctcgtgag cgaagtgaga atcacactgg gtacggttac
      781 gacactgtaa acatcacgca atgcgatctc aaacgcacca ttcaactcag cgacacgtcg
      841 aagaagtaca tcatcacacc gatggagact gttgaaccca gcgcaccaac tactccgagc
      901 agtcgtcccc cggcaccgag tacgccatca acgcgcggtg gtgtcgtcga ctatttcaat
      961 agcatcgtcg ataccggcga acgtaaacag atgtttggtt tcaatgcgcg tcatgtgaag
     1021 agtgcaactg tcattaccgc gtccgcagac tcttgttcac ctggtaagag aagaattgaa
     1081 ttggatggtt ggtacgtaga cttaaacgtc gaattcaact gtgagacgaa caagacaccg
     1141 aaagtgccga cggagcgtgc tccg
//
LOCUS       DATCGC010001275         2197 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_52434, whole genome shotgun sequence.
ACCESSION   DATCGC010001275 DATCGC010000000
VERSION     DATCGC010001275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2197)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2197)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2197
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52434"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..603
                     /locus_tag="VIJ87_12305"
     CDS             <1..603
                     /locus_tag="VIJ87_12305"
                     /inference="COORDINATES: protein motif:HMM:NF012544.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445221.1"
                     /translation="YLPAGAAVFVILGAIAAIMTALNGTMLVPSRLAIMFAKDRLAPN
                     WIGFVNPRTATPIRGLTLTLLACALLLISGQLALALNVAVAALICLYFIHSLVFLLLP
                     TLNPALANEITLPMPKWLMQLAAIFSVISMGTMIFIQLLGDIDTLKTQTLSQRISGHS
                     LTSIELIVVWGMVGAVLYQIARWRSRGAKPQLTTEGANAD"
     gene            593..1330
                     /locus_tag="VIJ87_12310"
     CDS             593..1330
                     /locus_tag="VIJ87_12310"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY5445222.1"
                     /translation="MQIEGKRVLVSGAGRGLGRTLAFAFARAGAMEVLAGMRREEDRN
                     ALNDEAAKLGANITPVQLEIRSDQDVNAVAQLGPIDILVNNAGIAGYGNPITMDFATI
                     EEEIQVNYLGTLRMVRMFAPAMIEQGEGVIVNIATAFAKVNLPLVGTYCATKAALLSL
                     GQALRAYLSDRGVVVITVLPTTIDTDMSRGANVPKMGTEFVADEILQAIREEKHDPPI
                     GDEARGVIDGLAKDPIGFEKMIGKYRA"
     gene            1609..>2197
                     /locus_tag="VIJ87_12315"
     CDS             1609..>2197
                     /locus_tag="VIJ87_12315"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEY5445223.1"
                     /translation="MTQPTLDRHRYAFPTLASGIHLLSHSLGPVPRSARESMLAYCDA
                     WENHTGEDAWATSWWELSQQVGDRIAHILGGAPGSVQIQPNASIALATVASCFDFKES
                     KRNKVVTTALDFPSMEYIWDGQRQVGARVEMVASPDGISTPTEDILRAIDDQTALVAI
                     AHTSYRSSYRVEARAIVERAHAKGAKVLFDVYQSAG"
BASE COUNT          508 a          575 c          591 g          523 t
ORIGIN      
        1 tatttacctg ccggcgcggc agtgtttgtc atcctcgggg ccattgccgc aatcatgact
       61 gcgctcaatg gaacgatgct cgtaccctca cgactggcaa tcatgtttgc caaagaccgg
      121 cttgcgccaa actggatcgg cttcgtcaac cctcgcacag ccactcccat tcgtggtctt
      181 acattgacgc tgcttgcctg cgcgttgtta ttaattagtg gacagctcgc actcgcgctg
      241 aatgtcgcgg ttgccgcact tatctgtttg tacttcattc acagcctcgt atttctactt
      301 ctaccgacat tgaatccagc gctcgcgaat gaaatcactt tgccaatgcc gaaatggtta
      361 atgcaacttg ccgcgatatt ctcggtaatc tcgatgggta ccatgatctt cattcagctc
      421 cttggtgaca tcgacacgct gaagactcaa acactgtcgc agagaatctc gggtcattcg
      481 ctgaccagta ttgaactcat agttgtgtgg ggtatggtgg gggcagtgtt gtaccaaatc
      541 gcgcgctggc gatcacgtgg tgcgaagccg cagcttacga ctgaaggtgc gaatgcagat
      601 tgaaggaaaa cgagtactcg tttcaggagc gggccggggt ctcggtcgca ccttggcgtt
      661 cgcgtttgct cgggccggcg ccatggaagt cctcgccggt atgagacgtg aagaagatcg
      721 caacgccttg aatgacgaag cggccaagct tggcgcgaac atcaccccgg tgcaactcga
      781 gattcgctcg gatcaagacg tgaatgcggt tgcgcaactg ggccctatcg atattctcgt
      841 caacaacgcc ggcatcgctg gttacggcaa tccaatcaca atggactttg cgaccatcga
      901 ggaagagatt caggttaact atctcggaac tctacgaatg gtgcgcatgt tcgctccggc
      961 aatgatcgaa caaggcgaag gtgttatcgt gaacattgca actgcgttcg caaaagttaa
     1021 cttgccgttg gttggaacat actgcgcgac caaggcggcg ttgttgtcac taggtcaggc
     1081 tttgagagct tatctgtcag atcgaggtgt ggtggtaatt accgttctgc caaccacaat
     1141 cgatacggac atgagccgtg gcgcaaatgt tccgaagatg ggaacggagt ttgtcgccga
     1201 cgagatcctg caagcaatcc gagaagagaa gcatgatcca ccgattggcg acgaagctcg
     1261 aggagtgatt gacgggctcg cgaaggaccc gatcgggttt gagaagatga ttggaaagta
     1321 ccgggcttag ggccacttga aagattattt gtcattggtc attttccatt tgtcattttc
     1381 catttttcga agcctgagaa ctctctgaga cttgagcgat cgagtgggtt gaagtcagta
     1441 ccacgacgcg gtagcgtgtg gctcaagatc gacgacttca aggtatctac cgggcggcca
     1501 agccacaagc taccgcgtcg tggtactgac cccatgaccc ttcggagcgc ctttcaaatg
     1561 gaaaatgaca aatggaaaat gagcaatgac caataaatcc tttttccaat gacacagccc
     1621 acactcgatc gccaccgcta cgcatttcca accctggctt ccggcattca tctgctcagc
     1681 catagtcttg gacctgtgcc gcgttcggcg cgcgagtcga tgcttgctta ttgcgacgcg
     1741 tgggaaaatc acactggcga agacgcatgg gcaactagtt ggtgggaact ctctcaacag
     1801 gttggcgatc ggattgcaca cattcttggc ggtgcgccag gctctgttca aatccagcca
     1861 aacgcatcga tcgcactcgc aactgtcgct tcctgttttg atttcaaaga gtcgaagcgc
     1921 aacaaggttg ttaccactgc tctcgacttt ccatcgatgg aatacatctg ggacggccag
     1981 agacaagtcg gtgctcgcgt tgaaatggtt gcgtcgccgg atgggatatc cacgccaact
     2041 gaagacattc tccgcgccat cgatgaccaa acggcactcg tagcaattgc acatacttca
     2101 tatcgcagct cctatcgagt tgaggctcgc gcgatcgtcg aacgcgctca cgccaaaggc
     2161 gcaaaggttt tgtttgatgt ctaccagtcg gcgggag
//
LOCUS       DATCGC010001276         1298 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_185347, whole genome shotgun sequence.
ACCESSION   DATCGC010001276 DATCGC010000000
VERSION     DATCGC010001276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1298
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185347"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..396
                     /locus_tag="VIJ87_12320"
     CDS             <1..396
                     /locus_tag="VIJ87_12320"
                     /inference="COORDINATES: protein motif:HMM:NF016107.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HEY5445224.1"
                     /translation="HIRKNAELAISGPYAFTRNPLYLGSLLLGLGFTIASGRWLLAIL
                     FAALFLGIYFPVMRVEASTMAELFGEQFQRYKQAVPLFFPRLTPFRQDDSKSVRFDGS
                     LYMRYREYRAALGLAIAWGLLLAKSYYLR"
     gene            393..1259
                     /locus_tag="VIJ87_12325"
     CDS             393..1259
                     /locus_tag="VIJ87_12325"
                     /inference="COORDINATES: protein motif:HMM:NF022750.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3108 domain-containing protein"
                     /protein_id="HEY5445225.1"
                     /translation="MNVKNAKLWLLFVLSVFFIGTTIVSEAQKPIAVTTRPFEPVEEL
                     FYEAEFNRALLKGLNVAEFKLRSERTPVTSPTNVDGEKTTNKSYSLAFSAEVLSKGFF
                     TRLFNLKFREQIQSTVDPDTFTLQKTTMFDEQGKRVRTTETLYDRTKGKMSWTQRDPN
                     NPNAEPRTAVADFVGQLQDVLSAVYFLRTQPLLVGKTFEVFIAESGRVYRVPIHVVER
                     KKMKSVLGRGNVFRLEPDVFGPNGLIDDEKGQFSIWVTDDERRVPVSARIKTDYGTFE
                     IKLKRAVYNPPV"
BASE COUNT          314 a          304 c          344 g          336 t
ORIGIN      
        1 cacattcgca agaatgcgga acttgcgatt tcagggcctt acgccttcac gagaaaccct
       61 ctctacctcg gtagtttgct actaggcctt ggcttcacga tcgcatcagg ccgttggcta
      121 cttgccatac tgtttgcggc cttatttctt ggcatctatt tcccggtgat gcgcgtcgaa
      181 gcctcaacaa tggcggagct gtttggcgag caatttcaga ggtacaaaca agccgtgccg
      241 ttgttctttc cccgactcac tccctttcga caagacgact caaagtcagt tcgatttgat
      301 gggagtttgt atatgcgcta ccgggaatat cgagcggcac tgggactcgc aatcgcatgg
      361 gggttgcttc tggcaaagtc gtactacttg agatgaacgt gaaaaacgca aaactttggt
      421 tgctgttcgt gctgagcgta tttttcattg gcacgactat cgtaagcgaa gcgcagaagc
      481 caatagcagt taccaccagg ccattcgagc ctgttgagga gttgttttac gaggctgagt
      541 ttaatcgcgc gttgttgaaa ggtctgaatg tcgcggagtt taagctgcga tcggagagaa
      601 cgcccgtcac gagtccaacc aatgtggacg gtgagaagac aacaaacaaa tcatactcat
      661 tagcttttag tgctgaggtt ttgagtaaag gatttttcac gcggctcttt aatttgaagt
      721 ttcgcgaaca gattcaatcc accgttgacc ccgacacttt tactttgcag aagacgacga
      781 tgttcgacga gcaaggaaaa cgggttcgga ccacggagac gctgtatgat cgaaccaaag
      841 gcaagatgtc gtggacgcaa cgtgatccta acaatccgaa tgctgagcca cgaactgcgg
      901 tagcagactt tgtgggtcag ctacaggatg ttttgtcggc tgtttacttc ctccggactc
      961 aaccgctgct agttgggaaa actttcgaag tgttcattgc cgaaagcggc cgcgtttacc
     1021 gtgtgcctat tcacgtcgtc gagagaaaga agatgaagag cgttctcgga cgtggaaatg
     1081 tgtttcgcct ggagcctgat gtgtttggtc caaatggtct gatcgatgac gagaagggtc
     1141 aatttagtat ctgggtaact gacgacgaac ggcgtgtccc tgttagcgct cggataaaaa
     1201 cagactacgg aacgtttgag atcaagctca agcgcgccgt ttacaatccg cctgtctagc
     1261 atggctccca gtaatcattt aggctgttca ccttgagc
//
LOCUS       DATCGC010001277         1053 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_86284, whole genome shotgun sequence.
ACCESSION   DATCGC010001277 DATCGC010000000
VERSION     DATCGC010001277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1053
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86284"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            20..>1053
                     /locus_tag="VIJ87_12330"
     CDS             20..>1053
                     /locus_tag="VIJ87_12330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445226.1"
                     /translation="MLPFRLLEANQDLFIWFKGTLDCNWPQHFLSEQSFRAQLQDIYA
                     HGFRSISLNEYNPDLLQRAVDIADDIGFNREIVLTAPYPARFSKIDFRNLTPIYYVSD
                     EVDVRGDSYISSHIEQWHRIKHAGGQTMASLVNQTFTKRFFDKSDIGCPPEILSYYLP
                     SNLTYFLAHSEFPKLRERKTYYYWQSHMEKPDVHRVLAGVYLWKSKADGIAPYCYQHL
                     PTAPFSPFNDFDEWEPGFQVGSVKRPFKDHMTTYPATSGSIPTRQWKGLADGINDLRY
                     LTTLAQTIKDQEASSSPAIQAVIHESWRRVELFFYRISLNQIEILSETNPIPYKEITS
                     DEYAGFREQVA"
BASE COUNT          288 a          267 c          235 g          263 t
ORIGIN      
        1 gctgaaccta caaatcgaag tgctcccctt tagactcctc gaggcgaatc aagatctctt
       61 catttggttc aagggaactt tggactgtaa ctggccacag cattttctga gtgagcagag
      121 cttccgggca caattacaag acatttacgc tcacggattc cgtagcatct ctctgaacga
      181 atacaacccg gacctactgc aacgcgcggt ggatatagcc gacgatattg gtttcaatcg
      241 tgaaatcgta cttaccgctc cttatcctgc acgtttctca aagatcgact ttagaaatct
      301 caccccaatt tattacgtca gtgatgaagt ggatgtccga ggcgacagct acataagctc
      361 ccatatagag cagtggcaca ggataaagca tgcaggtgga caaacaatgg cttcattggt
      421 caaccaaact ttcaccaagc gcttctttga taagtcagac attggctgtc caccggaaat
      481 actcagttac tatctaccgt caaacttgac ttactttttg gctcactcgg aatttccaaa
      541 acttcgggaa agaaaaacct attactactg gcaaagtcac atggaaaaac cggacgttca
      601 tcgagtgctt gccggtgtct atctttggaa gagcaaggct gatggcatcg cgccttattg
      661 ttatcaacat ctgcccaccg ctccgttctc accattcaac gacttcgacg aatgggagcc
      721 gggcttccaa gttggctcag tgaagcggcc attcaaagat catatgacga cgtatccagc
      781 tacgtccggg agtatcccga cacgacaatg gaaagggctg gcggatggaa tcaacgactt
      841 gagatacctt acgacactgg cgcagacgat taaagatcag gaagcttcta gttcaccggc
      901 gatccaggcc gtcattcacg aatcgtggcg aagagttgag cttttctttt atcggatttc
      961 tcttaaccag atcgaaatcc tctccgagac gaatcctatt ccctataaag aaatcacgtc
     1021 tgacgaatat gcaggttttc gcgagcaggt ggc
//
LOCUS       DATCGC010001278         1208 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_319839, whole genome shotgun sequence.
ACCESSION   DATCGC010001278 DATCGC010000000
VERSION     DATCGC010001278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1208)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1208)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1208
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_319839"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1208)
                     /locus_tag="VIJ87_12335"
     CDS             complement(<1..>1208)
                     /locus_tag="VIJ87_12335"
                     /inference="COORDINATES: protein motif:HMM:NF012708.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HEY5445227.1"
                     /translation="PSVSRAQAGIKHIDENYYLFPLRPSNPVTLNGKAVGDNEALAPG
                     DIVGVGPFRLEIDDTEDALVIRVSLQIGMHAADADASSPGLTTDQLETPVEGKKPAKT
                     RAAPIAGTKALDIFWDKRIREAGKMIRPSPLLPKSQRRLGKAQFNWLATSDLQSRWAG
                     SLFVWAFILVGVVSVAAAYSYAKAFVPAPLATVHSEAQMVMVPAIARQPNAGACTSCH
                     TWKGRMEDRCAQCHQTDAFVATVIKPHEAAGVGCIDCHSEHKGADFKAGVGALATCTG
                     CHNDGNHQLYNGKRVGTPHGGTVGYPVVNNVWSNKAVNDDEWELKKIPIVRLPTDDDA
                     KWKSKQFHALHSERVKIVSGIQGNALGQLSCSSCHTSFDPIDRATPRTTCGVCHNGLK
                     QEGTNKVLIS"
BASE COUNT          272 a          337 c          302 g          297 t
ORIGIN      
        1 ttgatatcaa gactttgttc gttccctctt gcttgagtcc gttgtgacaa acaccgcacg
       61 tagttctagg agtcgctcga tcaattgggt cgaacgacgt atgacaactg gaacacgaca
      121 actgtcctaa ggcatttccc tggatgccag acacaatctt cacccgctcg gaatgaagcg
      181 cgtgaaattg tttgctcttc catttcgcat catcgtcggt gggcagacga acgattggga
      241 tcttcttcaa ctcccactcg tcatcgttta ccgccttgtt actccagaca ttgttcacta
      301 ctggataacc gacggtccct ccgtgaggag tgccgactcg cttgccattg tagagttgat
      361 gattgccgtc gttgtggcag ccggtacaag tcgccaatgc tccgacaccg gctttgaagt
      421 cggcgccttt gtgttctgag tggcaatcga tacaacccac accggcggcc tcatgtggct
      481 tgatgacagt agcaacaaag gcatcggtct ggtggcactg agcacaacgg tcttccattc
      541 ttcctttcca ggtatgacac gaagtacacg caccggcatt cggttgtctg gcaatcgccg
      601 gaaccatgac catttgagct tcactgtgca ccgttgcgag cggcgccgga acaaaggctt
      661 ttgcgtaaga ataagctgca gctacagaaa caacacctac aagaatgaac gcccagacaa
      721 aaagtgatcc cgcccaacgc gattgcagat cgctggtcgc gagccaatta aactgggcct
      781 ttcctaatcg tctttgactc ttaggcaata aaggcgacgg ccgaatcatc ttaccggctt
      841 cgcgaatacg tttgtcccaa aagatgtcga gcgcctttgt tccagcaatg ggtgcggctc
      901 gcgtcttcgc cggtttcttt ccctcgaccg gcgtctcaag ttgatcggtg gttaggcctg
      961 gactgcttgc gtcagcgtca gcagcatgca ttccaatctg tagagacacg cgaatcacaa
     1021 gcgcatcttc tgtgtcgtcg atctccagac gaaacggacc aacaccgaca atgtcaccag
     1081 gcgccagcgc ctcgttatct ccgacagcct taccattcag ggttactgga ttgctcggcc
     1141 gcagcggaaa tagatagtag ttctcgtcta tgtgtttgat accggcctgg gctcttgaaa
     1201 cagatggg
//
LOCUS       DATCGC010001279         1115 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_350777, whole genome shotgun sequence.
ACCESSION   DATCGC010001279 DATCGC010000000
VERSION     DATCGC010001279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1115
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_350777"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            480..>1115
                     /locus_tag="VIJ87_12340"
     CDS             480..>1115
                     /locus_tag="VIJ87_12340"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: protein motif:HMM:NF002872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006002 - fructose 6-phosphate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent 6-phosphofructokinase"
                     /protein_id="HEY5445228.1"
                     /translation="MYGTIGILTGGGDAPGLNAVIRAVVKTATCEHGMRVIGIEDGFE
                     GLIGATQTRLLSASDVRGLLPRGGTILGTRNRGNFCERTKDGVKMSVESVYQEAISNM
                     RVLGIDALVVLGGEGTLGIAAEFHQRGIPVCGVPKTIDNDLACTELTFGFVTALDIAT
                     EALDRLHTTAESHDRVMILEVMGRHAGWIALHSGIAGGADVILIPEIPFSME"
BASE COUNT          256 a          278 c          292 g          289 t
ORIGIN      
        1 cgtccccggc gtgcggacgt agaccaatct ctaaccgcag cgtcagttcc atttcgtagc
       61 ccgcttcacg caatcgttca atcgcttcag caaccttggt cgaattctct accgattcgt
      121 ttattgctgt gccaatctcg cggactattt cttttgcgtc gtcgtcaatt tccaacttat
      181 cacgccttct gtattaggac ttgaacgttt cagatctcac tttcctgcta tgctacgcga
      241 agcaataaaa gagggtcaag atattgcaga tttccgattg tagattcaga ttggaaacct
      301 ccatgctgaa tacgttgaat caatgggtac cttgatctcc gtcaacgtgg tcgagtggta
      361 tcgaggcaca cggcctttct atttcttcat aggccactga agttatagac tgtcgctagc
      421 acacagggct caacagccaa acagggaacg tagcggttta atttgaccag gatcgactga
      481 tgtacggaac gattggaatc ttaacgggtg gtggtgatgc accaggctta aacgccgtga
      541 ttcgcgctgt cgtgaagaca gcgacatgcg aacacggaat gcgagtcatt ggcattgagg
      601 acggttttga aggcttaatt ggtgctactc aaactcgatt actctcggcc agcgacgtgc
      661 gcggactatt gcctcgcggt ggaaccattc tgggaactcg caaccgcggc aatttctgtg
      721 aacgcactaa agacggtgtg aagatgagcg tcgagagtgt ctatcaagag gccatttcga
      781 acatgcgggt actcgggatc gatgccttgg tcgtgcttgg tggcgagggc acgctgggaa
      841 ttgcggccga gtttcaccaa cgtggaattc ctgtttgcgg tgtacccaaa actatcgaca
      901 acgatctcgc ctgcacggaa ctgacattcg gtttcgtaac cgccctcgat atcgctactg
      961 aagcactgga ccgtctgcac acaactgccg agtcgcatga tcgagtaatg attctggaag
     1021 tcatgggccg acacgccggt tggatagcac tccattccgg aattgcaggc ggtgctgatg
     1081 tgattcttat tccggagatt cccttttcga tggag
//
LOCUS       DATCGC010001280         1605 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_319866, whole genome shotgun sequence.
ACCESSION   DATCGC010001280 DATCGC010000000
VERSION     DATCGC010001280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1605)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1605)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1605
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_319866"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            161..1099
                     /locus_tag="VIJ87_12345"
     CDS             161..1099
                     /locus_tag="VIJ87_12345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445229.1"
                     /translation="MLSNKTRVWLVCSALLVILSASPVWSQKEKEKEQKEYTGTPVLW
                     TQPTDITTRNLLLGAGGEAMKPDIRQITFIEQKEGGYSTKYRVRDAAGNEWIAKIGKE
                     AQPDTAANRLLWALGYETEIAYLFPALTIEGKGKFENVRLEARPKDVKRTGNWKWEEN
                     PFKGAPEFQALKIMMVMINNWDMKDDNNEILASKSEGTDGTLRYIISDLGGSFGKTGG
                     IISRSRNKPSDYVKATFIEKVKGNDIDFKYSGKNKKLFENLTTADARWLSNLLGQLSD
                     EQIKDAFRAANYSPEEVDQLSQAFKERITELANVGK"
     gene            complement(1260..>1605)
                     /locus_tag="VIJ87_12350"
     CDS             complement(1260..>1605)
                     /locus_tag="VIJ87_12350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445230.1"
                     /translation="PGQLLVFVGDGGALQEGSPAKSFVPQDLSQLVRAINTVKKSDRL
                     YVKLFRITNGAVIGTSEMPSLPPSMVATLNSERTAGGYTPTVLSPVYEMELPPAEFVI
                     SGQQLIAIDVMP"
BASE COUNT          459 a          393 c          407 g          346 t
ORIGIN      
        1 aaaagccaac gccgaaaagc gttggctttt tcttttgcca actcacacgg tatcactgtt
       61 gctttacctc actttgagtt agatagacgc ccctttacgt gctcgcttac gagacgagag
      121 ggacacgact tgtatcagaa accaacaggt ggatgaaatt atgttaagca acaaaactag
      181 agtttggctc gtttgttcgg ccctattggt aatcctatcg gccagtcctg tctggtccca
      241 aaaggaaaag gagaaagagc aaaaggaata cacgggaact cctgttcttt ggacgcagcc
      301 aaccgacatc acaacccgaa acctattact aggcgccggc ggcgaagcga tgaaaccaga
      361 cattcgccag attacattta ttgagcaaaa ggaaggtggc tactcaacga aatatcgagt
      421 tcgtgacgcc gccggtaatg aatggatagc caaaatcgga aaggaagcac agccagacac
      481 ggcggctaat cgactccttt gggcactggg ttacgagacg gagatcgcct acctgtttcc
      541 ggctctcacg atcgaaggca aggggaaatt tgaaaacgtg cgtctcgaag ccagaccaaa
      601 ggatgtaaag cgcactggca attggaagtg ggaagaaaac ccgtttaagg gagccccgga
      661 gtttcaagct ctcaagatca tgatggtgat gatcaacaac tgggacatga aggatgacaa
      721 taacgaaatt ctcgcctcca agtctgaagg tacagacggc acacttcgct acatcatcag
      781 cgacctgggc ggatcgtttg gaaagactgg ggggataatt tcacgtagcc ggaataagcc
      841 gtcggattac gtcaaagcta ccttcatcga aaaggtcaaa ggcaacgaca tagattttaa
      901 gtacagcgga aaaaacaaga agttgttcga gaacctgacg actgctgacg cgcgctggct
      961 gagcaatttg cttggtcaac tgagcgacga acaaatcaag gatgcgtttc gagcagcgaa
     1021 ttattcgcct gaagaggtcg accaactctc gcaggcattc aaggagcgaa ttactgaatt
     1081 agcaaacgtt ggtaagtgat gtccgatatg ctttagcttg tcgttgactc agagaacaag
     1141 ctgctaaaag caaataagca aatgccacgg aaagggatca cccttccgtg gcatttgtgg
     1201 ttttcttagt cgcctgttcg gtgagttgac gacaagctaa agcatatcgg acatgactct
     1261 caaggcatga catcgatcgc gatcagttgt tgacccgaaa tcacgaactc tgccggcggt
     1321 aattccatct cgtaaaccgg agacaaaaca gtcggcgtgt agccgcctgc cgttcgctcg
     1381 ctattcagcg tcgcaaccat cgatggcggc aagctcggca tttcgctggt accgatgacc
     1441 gccccgtttg tgatccgaaa cagtttgacg tacaggcgat cgcttttctt gactgtgtta
     1501 atggcccgca ccaactgact cagatcctgt gggacaaaac tcttggcagg cgatccctcc
     1561 tgcaatgcgc caccatcacc gacaaacaca agcaactgac ccgga
//
LOCUS       DATCGC010001281         2477 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_52621, whole genome shotgun sequence.
ACCESSION   DATCGC010001281 DATCGC010000000
VERSION     DATCGC010001281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2477)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2477)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2477
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52621"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            80..1108
                     /locus_tag="VIJ87_12355"
     CDS             80..1108
                     /locus_tag="VIJ87_12355"
                     /EC_number="1.2.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018392213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HEY5445231.1"
                     /translation="MSTAVKKEHKSPRPERGGPATLVEAIRQGIWEEMERDPTVFVIG
                     EDVGAYGGAFKVTDGLIDHFGKERVVDTPISEGAIVGAACGAALMGMRPVAEFQFIDF
                     ISAGFDLLTNYAAKCRYRWGAGLPTVFRGPCGSGVRSGPFHSLNAEAFFLNTAGLKIV
                     EPSTAYDAKGLIKAAIRDPDPVLFFEHKKLYRLPRLREDLPADDYIVEIGKARVVREG
                     RDLSIITFGAMVLTALDAAEELEKEGLDVEVIDLRTLAPLDKETILSSVRKTSRAIVL
                     HEASRTGGIGGEITALIAEEAFEWLDAPVIRVASIDTPVPYSPPLEDYYLPQIKDVVS
                     AARKLAAY"
     gene            1220..>2477
                     /locus_tag="VIJ87_12360"
     CDS             1220..>2477
                     /locus_tag="VIJ87_12360"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoamide acetyltransferase family
                     protein"
                     /protein_id="HEY5445232.1"
                     /translation="MSTEVVMPQMGESIAEGTITKWLKKVGERVERDEPLFEISTDKV
                     DAEIPSPAAGTLTEVRFNEGETVEVNVVVAILDGDSAGAAAPAKPAEPVAQQAKPVEP
                     PAVKVESTPAPPPPAPKAETKPEPPPAPPAPPVAEAGPTPKSDGTESAEDLRRTKSSP
                     LVRKIAQEHGVDITRLEGTGLSGRVTKNDILSFIESGSSKPAPAPPVEAIRPSAPPVV
                     DSPAPPAPKPTTGDRVEQMTVMRKKIAEHMVMSRRTSAHVTTVYEIDMTRIAKLRDSQ
                     REEFYQRTGTKLTFMPFIFEAVNKGLRKFPIFNAQVSGDQIIYKQDINLGMAVALDWG
                     LIVPVIKRADDLSISGLARAANDLAERARTKQLKPDEVTGGTFTITNPGVFGGLFGTP
                     IINQPQLAILGVGKIEKRAKVLTTADG"
BASE COUNT          613 a          650 c          687 g          527 t
ORIGIN      
        1 ccgaaagtgc ttgagagcta aacggcggca gagccgcttg cccattaggt acaattctct
       61 aaacacgtag ataaatagca tgtcaacagc cgttaagaag gaacacaagt ccccacgtcc
      121 ggagcgaggt ggcccggcca cattggtcga ggccattcgt cagggtatct gggaagagat
      181 ggaacgcgac cccacagttt tcgtgatcgg cgaggacgtc ggtgcctatg gtggagcctt
      241 caaagtcacc gacgggttga tcgatcattt tggcaaggag cgagtagtcg atacgcctat
      301 ttctgaaggc gcaatcgtcg gcgctgcgtg tggtgccgcg ctcatgggaa tgcgaccggt
      361 tgcggagttc cagttcattg atttcatctc cgccggcttc gacctgttga ccaactacgc
      421 ggcgaagtgt cgctatcgtt ggggcgccgg ccttccgact gtatttcgtg gaccgtgtgg
      481 ttcaggcgtt cgctccgggc catttcactc gttgaatgca gaagcatttt ttctaaacac
      541 tgcgggactg aagattgtcg aaccatcaac tgcttacgat gcaaagggac taatcaaggc
      601 cgccattcgc gatcctgatc cagtgctttt cttcgagcac aagaagcttt atcgcctgcc
      661 gaggttacgc gaagacctgc cggccgatga ctacatcgtc gaaattggaa aggcgcgcgt
      721 ggtccgggaa ggacgcgacc tttccatcat tacgtttggt gcgatggtat tgacggcact
      781 tgatgccgca gaggaactgg aaaaggaagg actggatgtc gaagtcatcg acttgcgaac
      841 actggcgccc ctcgacaagg aaacaattct gtcgagtgtg aggaagacaa gtcgagcgat
      901 cgttttgcat gaagcttcgc gaactggtgg tatcggtggt gagattacag cgttgattgc
      961 ggaagaggct tttgaatggc tcgacgcacc tgtgattcgt gtggcgtcaa tcgatacgcc
     1021 cgttccctat tcgccgcccc ttgaagatta ctatttgccg cagattaagg acgtcgtctc
     1081 agcggcacga aaactagcag cctattgaac gatgttcgat atgctttagc ttgtcgcctt
     1141 cgtttactag aaatcgtttt gcacgggtgg gcggaaaacg gtgacaagct gaagcatatc
     1201 gaatactaag ggagaaccga tgagtactga agtggtaatg ccgcagatgg gtgagtccat
     1261 tgcggaagga acaattacaa aatggctaaa gaaggtcggt gaacgtgtcg aacgtgacga
     1321 accgcttttt gaaatttcta ccgacaaagt cgacgctgaa attccatcgc ctgctgccgg
     1381 aacacttacg gaagtgcgtt tcaatgaagg tgagacggtt gaagtaaacg tcgttgttgc
     1441 gattcttgat ggcgattcag caggagccgc agcgccagca aaaccagccg aacccgtcgc
     1501 acaacaagcc aagccagttg agccacctgc agtgaaggtg gagtcaacac cagcgccacc
     1561 accgccagct cccaaagccg aaacaaaacc agaaccccct cccgcgccac ctgctccccc
     1621 ggttgccgaa gcagggccaa cgccgaaatc tgacggtacc gagagtgccg aagatcttcg
     1681 acgcaccaag tcgagtcccc tggttcgaaa gattgcccag gaacacgggg ttgatatcac
     1741 tcgactagag ggcacgggcc tgagtggtcg agtaactaag aacgatatct tgagttttat
     1801 cgaatcaggt tccagcaaac cagcacctgc tccgccagtc gaagcgatcc gtccgtcagc
     1861 gccgcccgtc gtcgacagtc ccgctccgcc ggcaccgaaa ccaacaaccg gagatcgcgt
     1921 cgagcagatg accgtcatgc gcaagaagat cgccgagcac atggtgatgt cgcgtcgaac
     1981 gtcggcccat gtgacgactg tttacgagat cgacatgacg cgtatcgcca agcttcgcga
     2041 ttcacagcgg gaagagttct atcaacgtac aggcaccaag ctcacgttca tgccgtttat
     2101 tttcgaagca gtgaacaaag ggctgcgaaa gtttccgatt ttcaacgccc aggtgagtgg
     2161 tgatcaaatt atttacaaac aggacatcaa tcttggaatg gctgtggccc ttgactgggg
     2221 attaattgtt cccgttatca aacgagccga cgacttgagc atctccggcc tggcccgcgc
     2281 cgcaaacgat ctagccgaac gcgctcgtac taaacaactg aaacccgatg aggtcaccgg
     2341 gggaacgttt acgattacca acccaggtgt atttggtggt ctatttggaa ccccaatcat
     2401 caatcaaccc caactcgcca tcctgggtgt cggtaagatc gaaaagcggg ccaaggtgct
     2461 aactacggca gacggtg
//
LOCUS       DATCGC010001282         1313 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_251146, whole genome shotgun sequence.
ACCESSION   DATCGC010001282 DATCGC010000000
VERSION     DATCGC010001282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1313)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1313)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1313
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251146"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..545
                     /locus_tag="VIJ87_12365"
     CDS             <1..545
                     /locus_tag="VIJ87_12365"
                     /inference="COORDINATES: protein motif:HMM:NF018446.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005267 - potassium channel activity
                     [Evidence IEA];
                     GO_function: GO:0015252 - proton channel activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TMEM175 family protein"
                     /protein_id="HEY5445233.1"
                     /translation="GVVAILITIMVLELRPPHEATLEGLRPLIPVLMSYLLSFVFLGI
                     YWTNHHHLIHAAEHVNGRVLWANLHLLFWLSLIPFATAWMGENHFSQWPVALYGTILF
                     LAAIAYFILVRALLTLHGPNSLLANALGSDFKGKISIVVYVVAIPLAFVRPWMACGFY
                     ILVAVMWLVPDRRIERQIGN"
     gene            647..>1313
                     /locus_tag="VIJ87_12370"
     CDS             647..>1313
                     /locus_tag="VIJ87_12370"
                     /inference="COORDINATES: protein motif:HMM:NF015451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacetone oxidase family FAD-binding enzyme"
                     /protein_id="HEY5445234.1"
                     /translation="MDQLAFDVIIIGGGAAGLFCAIEAGKRSRKIVVIEHAERVAKKI
                     AISGGGRCNFTNLHTRPESFLSANPHFCKSALARYSPRDFISLVERHGIAYHEKKLGQ
                     LFCDGSSQQIIDLLLNECSDAGVEIRCGCTVSQVRKQVEFEVETNEGTFTAPSLVVAS
                     GGLSIKPLGATDFGYQIAKQFELNIERTRPGLVPFTLDPIVLERLAKLSGVSIDALVS
                     YGNA"
BASE COUNT          276 a          345 c          343 g          349 t
ORIGIN      
        1 acggcgtagt cgcgatcctc attactatca tggtgctcga acttcggccg ccgcacgagg
       61 cgacacttga aggcctaaga ccgttgattc ccgtgctgat gagctatctc ctgagctttg
      121 tgtttctcgg gatctattgg acaaatcatc accatctgat acacgcagct gaacacgtca
      181 acggtcgcgt gctttgggcc aaccttcact tactgttctg gctttcgtta attccctttg
      241 cgacggcctg gatgggagag aatcattttt cgcagtggcc tgtcgctctc tacggcacga
      301 ttctttttct tgctgctatt gcctacttca tcctcgtgcg agccttgctc acattgcacg
      361 gtcccaattc cctgcttgcc aatgcgcttg gatctgactt caaaggtaag atttcgattg
      421 tcgtttatgt ggttgccatt ccgttggcgt ttgtcagacc gtggatggca tgcgggttct
      481 atattctcgt ggcggtcatg tggttggtgc cggatcgaag aattgaacgc cagatcggta
      541 attaattgcg cctctttgga gtgcggtggc ccggcaccgc tttcattctg gtgttcactc
      601 actaactcaa agcggtgcca ggccaccgcc ctccaaggaa ttttctgtgg atcaacttgc
      661 gtttgatgtc atcatcatcg gcggtggcgc cgctggactt ttctgcgcaa tcgaagccgg
      721 caagcgaagt cggaaaatcg tcgtcatcga acacgccgaa agagtcgcca agaagatcgc
      781 gatttcaggt ggcggacgct gtaacttcac aaacctacac acgagacccg aatcgtttct
      841 ctcagccaat ccacacttct gcaagtcggc actcgcgcgt tacagccccc gggatttcat
      901 cagtctcgtt gaacgacacg gcatcgctta tcacgagaaa aagctcgggc aactgttctg
      961 cgacggaagt tcgcaacaga taatcgactt gctgctaaat gaatgctcgg acgccggcgt
     1021 cgagattcgt tgtggttgca cggtgtcaca agttcgcaag caggtggagt ttgaagttga
     1081 gacaaatgaa gggaccttta ctgcaccttc attggtggtt gcgagcggcg gtctgtcgat
     1141 aaaacctctc ggagcaactg actttggtta ccaaatcgcg aaacagttcg agctgaatat
     1201 tgagcgaacg cgtccgggtc tcgtaccatt tacactcgat ccaattgtgc tcgagcgttt
     1261 agccaaactg agtggtgttt cgatcgatgc gctggtgagt tacggcaacg cct
//
LOCUS       DATCGC010001283         1397 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_86388, whole genome shotgun sequence.
ACCESSION   DATCGC010001283 DATCGC010000000
VERSION     DATCGC010001283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1397)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1397)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1397
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86388"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            381..>1397
                     /locus_tag="VIJ87_12375"
     CDS             381..>1397
                     /locus_tag="VIJ87_12375"
                     /inference="COORDINATES: protein motif:HMM:NF025774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MEDS domain-containing protein"
                     /protein_id="HEY5445235.1"
                     /translation="MSGDILSPAAKTLTTSGGSSLVSDTLLRHGDPSDNDHLVHFYES
                     DGFLLDSLSEFISSGLSNGETALVVATAQHLAQLQAKLEQDFDVLQLTLLGRYISLDA
                     EKVLDDLTSSGSLSAARFKESFGNLLAKVTSEQRSLRVFGELVALLCSRGRYAEAIEL
                     EELWNGIQQTTPFSLYCAYPLDGFVGGDLSEPLKQICLTHSRIIPGESYVSLSETNDQ
                     LHQITLLQQKALTLSHEIAERRKTEERLRGVQQELESQLAKSEEWLRREQVARAEAET
                     ANRMKDEFLATVSHELRTPLNAILGWSHMVNRGRLDPVASEQALESIERNARSQAQLV
                     EDLLD"
BASE COUNT          323 a          358 c          356 g          360 t
ORIGIN      
        1 ctttgcgttt gttcttaaga attagagtag gagaggcttc gcctcgtgta gccgctaaaa
       61 gagttgcggg ctcgccggaa agcctgaggc tttccgcacg gaaggcggca aagccgcata
      121 gccacccgtt tcattgagta gttcaacaac aggtgatgct ctgcggtatt tctccttgcc
      181 ttaaaagccg gggtgccact tcaactagac tctgagtcaa gctcactctt cactcctcga
      241 cgacggcgaa caactagctt agaatgtcgc cgcgattttg agcgtcacaa ccccttccct
      301 gactctcgaa gacgcacgag tattttgctt ttctcccttc cccagatgtt attaaagcaa
      361 attggagaat acctcccttg atgtccggag acattctgag cccagctgcg aaaacactaa
      421 ctacgagtgg tggtagtagt ctcgtatccg acacgctcct caggcatgga gatccttctg
      481 acaatgatca cttagtccac ttttacgagt ctgacggttt tcttttggac tcgctgtcgg
      541 agtttatttc gtccggtctg tccaatggcg aaactgccct ggtcgtcgcc actgctcaac
      601 atcttgcgca gttacaagcc aaacttgagc aggatttcga cgttttacag cttactcttc
      661 tgggtcgtta tatcagtctt gacgccgaaa aggtcttaga cgatctcacc tctagtggtt
      721 cgttgtctgc agcgcgcttt aaagaatcat ttggcaacct gcttgcgaag gtgacctcgg
      781 agcagcgatc tcttcgagtg tttggcgaat tggttgccct tctttgcagt cgaggccgat
      841 atgctgaagc gatcgaatta gaagagcttt ggaatggcat ccagcaaact acgccgtttt
      901 ctctctactg tgcctatcct ttagatggtt tcgttggcgg cgacttatcc gagccgttga
      961 agcagatttg cttgactcac tctcggatca tccccggtga gagttacgtc tcgcttagcg
     1021 aaacgaatga tcagcttcac caaatcacgt tgttacaaca aaaggctctg actcttagcc
     1081 atgaaatcgc tgaacgtcgg aagacggaag aacgattacg aggggtacag caggagcttg
     1141 aaagccaatt ggccaagtca gaagagtggc tgagacgtga gcaagttgcg agagccgagg
     1201 ccgaaacggc caatcggatg aaggatgaat tcctggcgac cgtgtctcac gagcttcgca
     1261 ctccactgaa cgcaatcctt ggttggtctc acatggtgaa tcgcggtcga cttgatccgg
     1321 ttgcgtccga gcaggcgctc gaatcgattg aacgtaacgc gaggtctcaa gcacaactcg
     1381 tggaagacct gctggat
//
LOCUS       DATCGC010001284         1436 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_452680, whole genome shotgun sequence.
ACCESSION   DATCGC010001284 DATCGC010000000
VERSION     DATCGC010001284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1436)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1436)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1436
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_452680"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..190)
                     /gene="rplL"
                     /locus_tag="VIJ87_12380"
     CDS             complement(<1..190)
                     /gene="rplL"
                     /locus_tag="VIJ87_12380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017150119.1"
                     /note="present in two forms; L12 is normal, while L7 is
                     aminoacylated at the N-terminal serine; the only multicopy
                     ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two
                     L12 dimers bind L10; critically important for translation
                     efficiency and fidelity; stimulates GTPase activity of
                     translation factors; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HEY5445236.1"
                     /translation="MAATREDVIEFLKSMTLLEASELVKELEQVFGVSAAAAAVAAPV
                     AAAGGGEAGEKEEEKTEFD"
     gene            complement(405..929)
                     /gene="rplJ"
                     /locus_tag="VIJ87_12385"
     CDS             complement(405..929)
                     /gene="rplJ"
                     /locus_tag="VIJ87_12385"
                     /inference="COORDINATES: protein motif:HMM:NF000955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HEY5445237.1"
                     /translation="MKTKKQKQKDLEALTEQFQNAKAAMLVGFQKMTVSKDQELRNQL
                     REAGVSYEVVKNTLARKASQGTAIEAAQEHFKGVTAVALSSGDPVGLSKAISKFTKAN
                     PDIFTFKAGVVEGKVVALQDVEAIASLPSKEELISKVMFLINCQAQRLVTVISAVPRN
                     LAVVIKQIGDQKSA"
     gene            complement(947..>1436)
                     /gene="rplA"
                     /locus_tag="VIJ87_12390"
     CDS             complement(947..>1436)
                     /gene="rplA"
                     /locus_tag="VIJ87_12390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009880170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HEY5445238.1"
                     /translation="GKSKTVLVIAQGEKVKEAEEAGADIVGGEDIVNKIKGGWTDFDA
                     VIATPDMMRLVGGLGKVLGPRGLMPNPKTGTVTFDVTTAIKETKAGKVEYRVDKTGVI
                     HVGVGKVSFEADKLRDNAKSLLDAIVKAKPATAKGKYVKKVNLAATMSPGVLLDEAAY
                     AK"
BASE COUNT          304 a          433 c          304 g          395 t
ORIGIN      
        1 cgtcaaactc agtcttttct tcttcctttt ctccggcttc accgccgccc gccgccgcta
       61 ctggagctgc caccgctgcg gccgctgccg atacgccaaa tacttgctcg agttccttca
      121 ccaattctga agcttcgaga agcgtcatgc ttttcaaaaa ttcgattacg tcttcgcgtg
      181 ttgctgccat gattaccttt ctatcctcct caaaggggtt cctgtttgct gtttgttgtt
      241 gttcgcagca ggagaaccca cgggacgttt ctttgatcac tgcatcgcga tccgagattc
      301 gtctgagccg caattgacga cctgactatc gccaagctcg ttgtccgcgt ccggccctgt
      361 gctatctgtt aaatccgaat ttcgaagttc gaactccgaa atacttatgc gctcttctga
      421 tcaccaatct gtttgataac cactgccagg tttcgcggga cggcggaaat caccgtaacc
      481 aatctctgtg cctggcaatt aattaagaac attaccttgg aaatcaactc ttccttcgac
      541 ggcaggctgg caatagcttc aacatcctga agagctacaa ccttgccctc aacgacaccc
      601 gccttgaagg taaaaatatc cggattggct ttagtaaact ttgaaatagc tttcgacagc
      661 ccaaccggat ctcccgaact caatgccact gcggtgacac ccttgaaatg ctcctgggcc
      721 gcctcgatcg cagtgccctg cgaagccttt cgcgcaagcg tgttctttac gacttcatac
      781 gacacgccag cctcgcgcaa ctgattgcgc aattcctgat ctttcgagac cgtcatcttt
      841 tgaaagccga ccagcatcgc agccttggca ttctgaaact gttcagtgag agcctcgagg
      901 tctttctgtt tttgtttttt tgtcttcatt tctcagcccc tcacttctat ttcgcgtacg
      961 ccgcttcgtc aagcaaaaca ccaggactca tcgtcgccgc gagattaacc ttcttcacat
     1021 acttaccctt cgcggtagca ggttttgctt ttacgatcgc atcgagtaac gacttggcgt
     1081 tgtcgcgaag cttgtcagcc tcaaacgaga ctttgccaac gccgacgtga atcacgccgg
     1141 tcttgtcgac gcgatactca accttaccgg ctttggtttc cttgatggca gtagtcacgt
     1201 cgaaagtgac ggttccagtc ttggggtttg gcataagacc tcgaggtcct aacaccttac
     1261 ccaagccacc gaccaacctc atcatgtccg gggttgcgat aaccgcgtca aagtcagtcc
     1321 agccaccctt gatcttgtta acgatatctt cgccgccgac aatgtcggcc ccagcctctt
     1381 cggcttcttt aaccttttcg ccctgggcaa taaccaaaac ggtttttgac ttacca
//
LOCUS       DATCGC010001285         1013 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_217053, whole genome shotgun sequence.
ACCESSION   DATCGC010001285 DATCGC010000000
VERSION     DATCGC010001285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1013)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1013)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1013
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_217053"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..605
                     /locus_tag="VIJ87_12395"
     CDS             <1..605
                     /locus_tag="VIJ87_12395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445239.1"
                     /translation="RGFLPWVLAGAGLLLAVCVMGFYLTQKQNASVVELVPPGPSPAP
                     SQTATFEPTASPIQNLDPKIQPTPQPKATVAESRPVRKVETQTPAPEPKKQSTPEPTP
                     VPQPSRQGTSGHEAEIPTTPTPGDPNGQPPGRPRPNQRGLPNVHVGPGGVVIRNFPDG
                     SKVISSPDGSRVYISPDGRRQVLAPGQKPNRQRPERPQRP"
     gene            720..>1013
                     /locus_tag="VIJ87_12400"
     CDS             720..>1013
                     /locus_tag="VIJ87_12400"
                     /inference="COORDINATES: protein motif:HMM:NF017046.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030145 - manganese ion binding [Evidence
                     IEA];
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P N-terminal domain-containing
                     protein"
                     /protein_id="HEY5445240.1"
                     /translation="MKKSIKLRLVIASLTISATFAVLTSGSFGVRAESRKQVASVIRI
                     TPPAPVFDQKERLAELAQRRARVAQSIGPKSLVVLFSTEPRVYTNDVDYQYRQE"
BASE COUNT          253 a          278 c          272 g          210 t
ORIGIN      
        1 gacgaggttt tcttccgtgg gtgcttgctg gtgcagggtt gttgctcgcg gtttgcgtca
       61 tgggctttta cctgacgcaa aagcagaatg catcagttgt tgagttggtg ccaccaggtc
      121 cttcaccggc gccgagccag acagcgacct tcgaaccgac agctagtcca attcaaaatc
      181 tcgacccaaa gatacagcca actccacaac cgaaggctac agttgctgag agcaggcctg
      241 tccgaaaagt cgagacacaa acgccagcac ctgagcctaa gaagcagtcg acgcctgaac
      301 caacgcctgt accgcaacca tcgcgacagg gaacaagtgg acatgaagct gaaatcccaa
      361 caactccgac gccgggagat ccgaatggtc agccccccgg gcgaccgagg cccaaccagc
      421 gtggccttcc aaatgttcac gtaggaccgg gtggcgttgt gatccgtaac tttcccgatg
      481 gttcgaaggt aatttcttcg ccggatggtt cgcgcgtgta catttccccg gacggtcgca
      541 ggcaggtgct tgctccgggc caaaagccga acaggcaacg accggaacga ccgcagcggc
      601 cctaatcgcg atcgaagatt ttattctgcg ttgctcacat cactgttgcc caagtaggat
      661 ttctgaacct atcaggaaca attcatgctg aacaaatttc ggttctgagg agaagtctaa
      721 tgaagaagtc tataaaactc cggctggtca ttgcgtcact gacgatcagc gcaacctttg
      781 cggtcttaac gtcaggcagt ttcggagttc gagcggaatc caggaagcag gttgcttctg
      841 tgattcgaat cacaccccct gcgccagtgt ttgatcaaaa agagagactg gctgagttag
      901 cccagcgccg agcacgcgtg gcgcagagca ttggcccaaa gtcattagta gttctcttca
      961 gcacggagcc aagagtctat acaaacgacg ttgactatca gtatcgacag gag
//
LOCUS       DATCGC010001286         1193 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_185620, whole genome shotgun sequence.
ACCESSION   DATCGC010001286 DATCGC010000000
VERSION     DATCGC010001286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1193)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1193)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1193
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185620"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..951
                     /locus_tag="VIJ87_12405"
     CDS             <1..951
                     /locus_tag="VIJ87_12405"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY5445241.1"
                     /translation="PHVESPPVQSRSKEIERLVTEGANRLLSRAEDSRLLKPGVLLPR
                     ITAAVQKYLLRDDPQVSAQNISSFIDGMQADDLCLIVACENNDESAWSDLVERFTTTV
                     RSAARSASSNEDAAEDLVQSIWAELYGLRIGKDGKPSSKLAYYSGRGSLAGWLRAVVS
                     QLAVDVFRKQSRLVQTEEDADFDRLARELPMSEGQGAIASGLENPEQVISTRFAQSDV
                     QQALTKSIGELAAEDRMLVKLYYFDNMKLREAGMVLGVHEATASRRLTRIHTDLRKRV
                     SQILVEERGWTKIEAERSFVEIAQHLDTDIEALVTKEGVS"
BASE COUNT          305 a          275 c          337 g          276 t
ORIGIN      
        1 ccacacgtcg agagtccccc ggtgcaatcg agaagcaagg aaattgagag actagttact
       61 gagggtgcga acagattgct gtcgcgcgca gaagatagtc gtctgctgaa acccggcgtc
      121 ttgcttccac gaatcacagc cgcagtccag aagtacttgc ttcgcgacga cccacaggtc
      181 tccgctcaaa acatctcttc ttttatcgac ggaatgcagg cagacgatct ttgtctcatc
      241 gtggcgtgcg agaacaacga tgaaagtgcc tggtccgacc tggttgagcg atttaccaca
      301 accgtccgtt ccgctgcgcg gtctgcgagt tccaatgaag atgctgcaga ggatttggtg
      361 caatctattt gggcggagct ttatggactg cgaataggta aagacggcaa accatcaagc
      421 aagcttgcgt actattccgg tcgtggctcc ctggctggtt ggttacgagc agttgtttcg
      481 caattggccg tcgacgtttt tcgtaagcaa tcgcgtcttg ttcagaccga agaagatgcg
      541 gattttgatc gcctggctcg cgagctacca atgtctgaag ggcaaggtgc aattgcttca
      601 ggtttggaga atcctgaaca agtgatttca actcgcttcg ctcagtcaga tgtacaacaa
      661 gcactgacga agtcgatcgg tgagttagcc gctgaagatc gaatgctggt gaagttgtac
      721 tacttcgaca atatgaagtt gcgtgaggca ggcatggtgc ttggcgtcca cgaagcaact
      781 gccagtcgcc gactaacccg gatacacacc gatttgcgga aacgtgtaag ccaaattttg
      841 gtagaagaac ggggctggac aaagatcgaa gctgaacgtt cgtttgtcga aattgctcaa
      901 catcttgaca cggatattga ggcgttggtc acgaaagaag gagtttcata agggttctgc
      961 aatcgataga gaaggtttga ccgcaaggat tgatgccaag tgcgttctta agatgacgat
     1021 gttctgagtg aaatgaagcg agaatcagaa aacgaaatgg atctgctgct ccggaacctt
     1081 ggtcggctga aagatacttc ccgacctgaa ggcgaagaag cggatgcgac gcatctggat
     1141 ccagacgagt tgaatgccta tgcggagaag gcactgcctg ccgctgcaca tgc
//
LOCUS       DATCGC010001287         5448 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_251208, whole genome shotgun sequence.
ACCESSION   DATCGC010001287 DATCGC010000000
VERSION     DATCGC010001287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5448)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5448)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5448
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251208"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..600)
                     /locus_tag="VIJ87_12410"
     CDS             complement(<1..600)
                     /locus_tag="VIJ87_12410"
                     /inference="COORDINATES: protein motif:HMM:NF020874.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1972 domain-containing protein"
                     /protein_id="HEY5445242.1"
                     /translation="MRIAILGTRGIPASYGGFETFAEHLSTRLVARGHQVTVYCRAHY
                     VSPRQLEFHGVRLEVLPTIRHKYFDTVVHAFLSALHAVPKRFDVALICNAANAPFAPI
                     LRLTGTPVAINVDGLEHKRKKWGRLGRHYYRVAEYLSTILPNEMVTDAQVIRHYYLAQ
                     HNAKSTMIAYGSEVERRPDRATVRKWRVEPNRYVLYVSRL"
     gene            complement(1098..1490)
                     /gene="rplS"
                     /locus_tag="VIJ87_12415"
     CDS             complement(1098..1490)
                     /gene="rplS"
                     /locus_tag="VIJ87_12415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HEY5445243.1"
                     /translation="MNRLDRIEETQLRKNIPRFQPGDTVRVHVRIKESETKERLQAFE
                     GVVIARKHGGARETITVRKTSFGVGVERIFPLHATIIDHIDLVKRGRVRRAKLYYLRG
                     LRGKAARIRERDTRGHQNDDSQAAAAKK"
     gene            complement(1555..2253)
                     /gene="trmD"
                     /locus_tag="VIJ87_12420"
     CDS             complement(1555..2253)
                     /gene="trmD"
                     /locus_tag="VIJ87_12420"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: protein motif:HMM:TIGR00088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052906 - tRNA
                     (guanine(37)-N1)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HEY5445244.1"
                     /translation="MLRIDIITIFPDFFREVVAYGIVRRARKSGLVDVIAHDLRQWTS
                     DKHHSVDDRPFGGGDGMVLKPEPLFAGVEALTGAGRREDLPTRTRVILLSPQGRVFSQ
                     AVAQEMVQEAKQIVLLCGRYEGVDERVVEALVTDEISIGDYVLSGGEPAALVVVDSLV
                     RLLPGALGSETSAVFESFSEGLLDCPHYTRPPDFRGMKVPDVLLSGNHAEIERWRREA
                     ALAKTRRNRPDLLK"
     gene            complement(2308..2850)
                     /gene="rimM"
                     /locus_tag="VIJ87_12425"
     CDS             complement(2308..2850)
                     /gene="rimM"
                     /locus_tag="VIJ87_12425"
                     /inference="COORDINATES: protein motif:HMM:TIGR02273.1"
                     /note="Essential for efficient processing of 16S rRNA;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HEY5445245.1"
                     /translation="MTSPKSDSADSLVSVAKAVRTRGLKGEIVAELLTDFPERFEGLT
                     SLIALAPGGDRQAVELEDFWLQNDRIIFKLAGVDTIEAAEAFREYEFCVLDEERVALE
                     QDEYYDFELIGCEVWLINGSRIGKVQSVLKTGGTEILLIDADAGSEVMVPLAKSIVVE
                     IDVTDKKILIDPPEGLLELS"
     gene            complement(2847..3080)
                     /locus_tag="VIJ87_12430"
     CDS             complement(2847..3080)
                     /locus_tag="VIJ87_12430"
                     /inference="COORDINATES: protein motif:HMM:NF024483.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HEY5445246.1"
                     /translation="MRDAIELIVKALVDDTESVDVREIEQRNGSTLIEVRVGPGDVGK
                     IIGKQGKTIRALRSLARIAGGKTNRRCLLEIVE"
     gene            complement(3102..3368)
                     /gene="rpsP"
                     /locus_tag="VIJ87_12435"
     CDS             complement(3102..3368)
                     /gene="rpsP"
                     /locus_tag="VIJ87_12435"
                     /inference="COORDINATES: protein motif:HMM:TIGR00002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HEY5445247.1"
                     /translation="MLAIKLMRTGAKKSPSYRVVVKEKQSKRDGAYLENLGTYNPTRN
                     PAEIKLNLTRVNYWIEKGAQPTVTVSQLIKASAKAATATAADGQ"
     gene            complement(3409..4887)
                     /gene="ffh"
                     /locus_tag="VIJ87_12440"
     CDS             complement(3409..4887)
                     /gene="ffh"
                     /locus_tag="VIJ87_12440"
                     /inference="COORDINATES: protein motif:HMM:TIGR00959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0048501 - signal recognition particle,
                     plasma membrane targeting [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005048 - signal sequence binding
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HEY5445248.1"
                     /translation="MFESLSDKLKRTLKNLRGEGVLTKEHVDAALREIRLALLEADVN
                     YKVAKDFIASVKEKAEGQQVWQELKPSEQVVKIVFDELVELLGGQSSRLVFTKQMPNT
                     VMVVGLQGSGKTTSTGKIARWLAANQDRKPLLLSVDVYRPAAREQLKVIARATGQQIF
                     EYPETNDPLTLVREAHKHAQQTGFDTLLIDTAGRLHIDDELMEELVTIKNETHPVEIL
                     FVADAMTGQDAVRSAEEFHRRVGITGVILTKMDGDARGGAALSIKQVTGQPVKFVGVG
                     ERYDALEPFYPDRVAQRILGMGDVLSLIEEVQSKVDQSEAEEQLKKLQKNEFTLDDFR
                     SQLRQVKKLGSFSKIMKLLPDQLLGGFGMPQLNDEQSKLMEQELKRTEAIIDSMTWAE
                     RTDHRILNANRRRRIARGSGTTVASVNQLIKQYTEMRQMMRQLSSSGLFGGGGLKSKM
                     MRKMTGMPDMSGFGGDAGELPGLPSGPPRKKLKNKKKKKRRK"
BASE COUNT         1275 a         1507 c         1265 g         1401 t
ORIGIN      
        1 gagcctcgag acatatagaa cgtagcgatt cggttcgacg cgccattttc gaactgtggc
       61 tcgatctggc cgacgttcta cctcgctacc gtaagcaatc atcgttgatt tcgcattgtg
      121 ttgggcgagg tagtagtgcc gaatgacctg agcatccgtg accatttcgt ttggcagtat
      181 cgtcgatagg tattcagcaa cccgataata atggcgacca agcctgcccc actttttgcg
      241 cttatgctca aggccatcaa cgttgattgc gactggagtg cccgtcagac ggaggattgg
      301 tgcgaacggt gcgtttgccg cgttgcagat caaagcgacg tcgaaccgtt tgggaactgc
      361 atgaagcgca gaaagaaaag cgtgaacaac agtatcgaag tatttgtgcc ttattgttgg
      421 cagaacctcg aggcgtacgc cgtgaaactc tagttgtctg ggagatacgt agtgagcgcg
      481 acaatagacc gtaacctgat gcccacgagc taccagtcga gtcgacagat gctctgcaaa
      541 cgtctcaaaa ccaccgtagc ttgcaggaat gcctcttgtt cccagaatgg ctatacgcat
      601 ggtcgaattg gctcgctagt ggttcttgaa ggactcacct cgtaaaaggc caggtgcgtt
      661 gtcgcgcagc tggcgggcca acatggaatt accacctttt gacgctcaac tgagcacgaa
      721 agacttgcag catgataaag ccttcgcggc ttcttgggcc agtcggtccg aaagctcgtg
      781 cacttgttaa gtccactccc gtcttgggct atttcgcggt gtgtggttga aaacgagacc
      841 agagggggaa aggtcgagtt ctgatcgttt cgtcgggcta cgacctacgt aagtcttttc
      901 tatcccgtaa gtgtgtcacc cacgttaagg ttccttatca tcgtgagtta aggcctacac
      961 cttgaaacga cgtaaggatc tcgcagtggt cagtctaaaa ataaagcgaa ggatgttgcg
     1021 ggcatccacg tcgaatgccc gctccacact tcgcttttac gtcttgcgct gtacgagaac
     1081 ctattggttt agcagggcta tttttttgcc gctgccgcct ggctatcgtc gttttggtgt
     1141 ccacgagtat cgcgctctcg aattctggcg gccttaccac gaagtcctcg taggtagtaa
     1201 agctttgcac gcctcacacg tcccctcttg accaggtcaa tgtgatcgat gattgtcgcg
     1261 tgaagtggga agatcctttc aactccaaca ccaaaactag tcttgcgaac ggtgatcgtt
     1321 tctcttgcac cgccatgttt gcgcgcaatc acaacaccct cgaaagcctg caatctttct
     1381 ttcgtttcgg attctttgat cctgacatgt acgcgaacgg tatcgcccgg ctgaaaccga
     1441 ggaatgttct tccgcaactg cgtctcttca attctgtcta atcgattcat tttccgtact
     1501 cctaatttcg agcggcgaca ctttaattac gaacactcgc tcctaaagtc aaaactattt
     1561 caataagtca ggacgattac gacgcgtttt cgctaaagcc gcttctcgcc tccaacgttc
     1621 aatctcagca tgattgccac ttaacaacac gtcgggcact ttcattccac gaaagtcagg
     1681 tggtctcgta tagtgcggac aatcaagtag cccttctgaa aacgactcaa agaccgctga
     1741 agtctcgcta ccaagagctc cgggtaatag tcttaccaat gagtcaacca ctactaacgc
     1801 ggccggctct ccacccgaca agacataatc accgatcgag atttcatcgg ttaccaatgc
     1861 ttccacgaca cgctcatcaa cgccttcgta ccgtccgcac aacaaaacga tctgctttgc
     1921 ctcctggacc atttcttggg cgaccgcttg ggaaaagaca cgaccctgcg gtgaaagcaa
     1981 aatcacccgg gtacgggttg gcagatcctc tcgacgcccg gcaccggtta gtgcctccac
     2041 cccggcaaac aaaggctcgg gtttcagcac catcccatcg ccaccgccaa acggacgatc
     2101 atcgacgctg tgatgtttat cgctggtcca ttgacgcaga tcgtgagcga taacatcgac
     2161 caagccgctt ttgcgtgcac gtcttacgat gccgtaagcg acaacctcac gaaaaaaatc
     2221 gggaaagatc gtgatgatgt cgatgcgtag catttctctt gcctattcac ttggtgaccg
     2281 gttcgatttc cggcaccgat caaagagcta tgacaactca agcagaccct ctggtgggtc
     2341 aatcaaaatc ttcttatccg tgacgtcgat ctccacaacg attgacttgg ccagtggcac
     2401 catcacttcg ctgccggcat ctgcgtcaat tagcagtatt tcagtaccgc ctgttttcaa
     2461 aaccgactga actttaccaa tcctgctgcc gttgatgagc cacacttcgc agcctataag
     2521 ttcaaagtcg taatactcgt cctgctccag cgctacgcgc tcttcatcaa gaacacagaa
     2581 ctcgtactct cgaaacgctt cggccgcctc aatggtgtcg acgcctgcga gcttgaagat
     2641 aatccggtcg ttctgtaacc aaaagtcctc tagttcgacc gcttgtcgat caccgccagg
     2701 cgccaacgca atcaagcttg tgagaccttc gaaacgctca ggaaagtctg tcaaaagttc
     2761 ggcgacgatt tcgcctttca aacccctggt tcttacagct ttcgcgacac taaccaacga
     2821 atccgcgctg tcgctcttcg gggaagtcat tcgacgattt ctaatagaca gcgtcgattt
     2881 gttttaccac cggcgattct cgccagagac cttaacgctc ggatcgtttt tccctgcttg
     2941 ccgatgatct ttccgacatc gcctgggcct acgcgaactt caatcaacgt tgagccattg
     3001 cgctgttcta tctcgcggac atctacgctc tcggtgtcgt ccacgagtgc cttaacaatt
     3061 aactctatgg catcacgcat tgctctttgt caccggaatg attattggcc gtcggcagca
     3121 gtagcggtcg ctgctttcgc tgaagcttta attagttgac ttacagtaac ggtcggctgt
     3181 gcgccttttt cgatccagta gttcactcga gtcaagttca gcttgatctc ggcaggattt
     3241 cgcgtcggat tgtaagtgcc cagattttcc aaatacgcgc catcgcgttt tgactgcttc
     3301 tccttcacaa ccactcggta tgacggactc tttttggcgc cagtgcgcat caacttaatt
     3361 gctaacaaat cgttcctcct tcagaacaga tccacctcgc gatggaatct actttcgtct
     3421 cttctttttc tttttgttct ttaacttctt tcttggcgga ccagatggca aaccgggcaa
     3481 ttcacccgca tcaccaccaa agccactcat atccggcatc ccggtcatct ttcgcatcat
     3541 cttgcttttc agtccgccgc cgccgaagag gccggaactg gaaagctggc gcatcatctg
     3601 ccgcatctcc gtgtattgct tgatgagctg attgacactc gcaacagttg tccccgaacc
     3661 gcgtgcgatc cgacgacgac gatttgcgtt taatatccga tgatcagttc gctcggccca
     3721 cgtcatcgag tcgataatcg cctcggtacg cttgagttcc tgctccatca gcttcgactg
     3781 ttcgtcgtta agttgaggca ttccaaaacc acccaaaagc tggtctggaa ggagcttcat
     3841 gatctttgag aaagaaccta gtttctttac ttggcgtagc tgagaacgaa agtcatctaa
     3901 cgtgaattcg ttcttttgta acttcttgag ctgctcttca gcttctgatt gatcgacttt
     3961 cgactgtact tcttcaatca gcgataggac gtcgcccatt cccaaaatgc gttgagcaac
     4021 acgatccgga tagaacggct caagcgcatc gtaacgctcg cccacaccaa caaactttac
     4081 cggctgaccg gttacctgtt tgatggaaag agcagcacca ccgcgagcgt caccgtccat
     4141 cttcgttaga atcacaccag tgattccaac tcgacgatga aactcctcag cggatcgcac
     4201 ggcgtcctga cccgtcatcg catcggcgac aaacaggatt tcaaccggat gagtctcgtt
     4261 cttaatcgta acgagctctt ccattaactc atcgtcgata tggagtcgac cagcggtgtc
     4321 gataagtagc gtatcgaaac ctgtttgctg agcatgcttg tgagcttctc gaaccagggt
     4381 cagcggatcg tttgtttccg gatattcaaa gatctgttgg ccagtcgccc tggcaattac
     4441 tttcagctgc tcgcgtgcgg caggtcggta aacgtcgacc gaaagcaaca acggctttcg
     4501 atcctggttt gcagcaagcc aacgagcaat cttgcctgtc gaagtagttt taccggaacc
     4561 ttgcagacca actaccatta cggtgttagg catctgcttg gtgaaaacta gacgagacga
     4621 ttgcccgcct aatagctcaa ccaattcgtc gaagacaatc tttacgactt gttccgacgg
     4681 tttcagttcc tgccaaacct gctgaccttc agctttttcc ttaactgaag caataaagtc
     4741 ttttgcgact ttatagttga cgtcagcctc tagtaaggcg agacgaatct ccctcagcgc
     4801 ggcgtcaacg tgctccttgg tcagaacccc ttcgccgcgc agattcttca gtgtccgctt
     4861 taatttgtcc gaaagcgact caaacatatg ccctaggtga agttccgcgc tgcgtacgga
     4921 aacggagagg atagcgacca cccccgagga gtgtcaaggc gaggtgccga cataaatcac
     4981 cgcgtaaatc gctgcgatat taaagttgtt gggattcagg gggtcattgt aggctcgtta
     5041 tctctgattc agttgaaaca attctcggtg gaatggttct tcattaccca gcaacccggg
     5101 tatttctgat ccagctcaag ggattcccag cgaaaaccgc gatctgtccc ggatcagcaa
     5161 acaagtaagc ctccgatatc agaagcccca tcgatctggc tagaaactaa ccaatttagc
     5221 gatcagttaa ctgtacgtgc agcatgtcct gtgctaaatt cctcgacgaa ttgttgttaa
     5281 gcagcacagc agcgttttag gcagtttacg gcagtccctt cctaccgatt acaacgcatc
     5341 gtgaaaacta agctcgattg agcttttatc tgatcctgaa tggataaacg tgtgggtccg
     5401 ggctcaaaag gtcccgaccg aaatacatca gctgaccgcg gtgtcgtt
//
LOCUS       DATCGC010001288         2150 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_384168, whole genome shotgun sequence.
ACCESSION   DATCGC010001288 DATCGC010000000
VERSION     DATCGC010001288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2150)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2150)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2150
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_384168"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2150
                     /locus_tag="VIJ87_12445"
     CDS             <1..>2150
                     /locus_tag="VIJ87_12445"
                     /inference="COORDINATES: protein motif:HMM:NF028438.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF5107 domain-containing protein"
                     /protein_id="HEY5445249.1"
                     /translation="SFTSARAQGSDSTARVWEAALSIPTYELGPPNPYPALLDWQRRK
                     WRPVYPYPFLDNLSNTKTSKSWKAVYLENEYLRVSVLPELGGHIYEIFDKTTKRDVLY
                     SNPVMKYAMVALRGAWVSGGIEWNFPDGHTLTTVSSIDYVIRTELDGSAAVAVGDTER
                     VQGMQWEVIIRLRPGQRSVETEVTLNNRRDVPGRYWFWSTAGAPAAPDMRFVYPMREA
                     YPHAFWPVFSFPKEKGVDVSKFSDVPNFLSLFARNSTRDYFGVYYDKSDWGIVHVADH
                     REMPGKKTWTWGTDDNGDIWVDKLTDGGGQYVEFQGGRFETQMEHQFIAPHRVEHFVE
                     HWFPVNNLGGAWDEATHDAALRINLQGNSAVVTANVNSRFTDAEIRIESGGVTLRANK
                     VNLDPAQTFRTSIDLPTSAVGHPLTVIFRDKQGRELIRYRTDTPIDGNPDFKPATRPI
                     PDPKVSNSAEQAYVEGLALDKKSKERELRAAYLEALRRDPGFAPAHIALGLSYYRSGE
                     YEKAETHLVQALRRNKDAGDAYYYLALVQRAKGRIAEATENLIWTVRSGYRESVARYV
                     LGEMALMSGHVDDAVDNLSQSVLLDPGDLKARTVLALAERLNGKLDSAQHRIDAVVRE
                     MPIDYLARSEQYEIQKALGQDAKAKASWAELWRLLSREPDSVLELTFDYAGAGRRVEA
                     KHILEEAIRQIVADQTKRESPMLHYTLGYLYEMD"
BASE COUNT          522 a          531 c          591 g          506 t
ORIGIN      
        1 cagtttcaca agcgctcgag ctcagggttc cgattcaacc gctcgcgtct gggaagcagc
       61 gctgtcgatt cccacttatg aacttggtcc accaaatcca tatcccgctt tgctcgattg
      121 gcaaagacga aagtggcgtc cagtctatcc gtatccattc ctcgacaatc tgagcaacac
      181 gaaaaccagc aagtcctgga aagcggttta cctcgagaat gaatacctgc gtgtttcagt
      241 cctaccggaa ctgggcggtc acatttacga aatcttcgac aagacgacta agcgcgatgt
      301 cctgtattcg aatcccgtga tgaagtacgc gatggtagca ctccgcggtg cgtgggtctc
      361 cggtggcatt gagtggaatt ttccagatgg ccacacgctc acgactgttt cttcgattga
      421 ctatgtaata aggacagagc tggacggcag tgccgcagtc gccgttggtg ataccgaacg
      481 cgttcaaggg atgcaatggg aagtgatcat tcgcctacgc ccgggtcaac gttcggtcga
      541 aactgaagta acactcaata atcgccgcga tgtgccaggg cgttactggt tctggtcgac
      601 agccggcgcg cccgctgcac ccgacatgcg ctttgtttat ccaatgcgtg aagcgtatcc
      661 gcatgctttc tggccggtct tctcctttcc gaaggagaag ggagttgacg tcagcaagtt
      721 tagtgatgtg ccgaactttc tttcgctttt tgctcggaac tctacacgcg attacttcgg
      781 tgtttactac gacaagtctg attggggaat agtccatgta gcagatcatc gtgagatgcc
      841 aggtaagaag acatggacat ggggcaccga tgacaacggc gatatttggg tggacaagtt
      901 aaccgatgga ggtggtcagt acgttgagtt tcagggtgga cgttttgaga cgcagatgga
      961 acatcagttt attgctcctc atcgagttga gcacttcgtc gaacattggt tcccagtcaa
     1021 taatcttggg ggcgcctggg acgaagccac acacgacgct gcactgcgaa taaaccttca
     1081 gggtaacagt gccgttgtta ctgcaaatgt aaactcccgt ttcactgatg cggagatcag
     1141 gatcgaaagc ggtggtgtga cccttcgcgc gaacaaggtc aatcttgatc cggctcaaac
     1201 cttcagaacg tcgatcgatt tacccacatc cgcggtgggc cacccgctca ccgtcatttt
     1261 tagggataag cagggccgag agcttattag atatcgaaca gacacgccta ttgatggcaa
     1321 tcctgatttc aaaccggcga cacggcccat tcccgacccc aaagtttcta atagcgctga
     1381 gcaagcttat gtcgaagggc tagctctcga taaaaagagt aaggagcgcg agttgcgagc
     1441 ggcttatttg gaggcgctaa gaagggatcc aggatttgcg cccgcacata tagcgcttgg
     1501 cctttcttat tatcggagcg gtgagtatga gaaagcggaa acccatctgg tgcaggcact
     1561 ccgacgcaat aaagatgcag gcgacgctta ttactatctt gcgcttgtac aacgagctaa
     1621 gggacgaatc gcagaggcaa ctgagaacct aatatggacc gtgcgctctg gttaccgaga
     1681 gtcagttgct cgttatgtac ttggcgagat ggctttaatg agtggtcatg tcgacgatgc
     1741 agtcgataac ctctcgcaat cggtcctgct ggatcctgga gatctaaaag cgcgaaccgt
     1801 ccttgccctc gccgaacgac tcaacggaaa actcgatagt gcacaacaca ggattgatgc
     1861 agtagtgcgc gagatgccga ttgattacct ggcgcgcagc gaacagtacg agattcaaaa
     1921 agccctcggc caagatgcta aggccaaagc ttcatgggca gagttgtggc gtttgctgtc
     1981 acgtgagccg gactctgttc ttgaattgac gtttgattat gcaggtgcgg gtcgtcgggt
     2041 tgaggccaag catattctcg aagaagcaat ccgtcagatc gttgcggacc agacgaagcg
     2101 cgagagtccg atgctgcatt acacgcttgg gtacctctat gaaatggatg
//
LOCUS       DATCGC010001289         3488 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_150831, whole genome shotgun sequence.
ACCESSION   DATCGC010001289 DATCGC010000000
VERSION     DATCGC010001289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3488)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3488)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3488
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150831"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..190
                     /locus_tag="VIJ87_12450"
     CDS             <1..190
                     /locus_tag="VIJ87_12450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445250.1"
                     /translation="PAAASTIPGGVVFNSGTAVPPPPGGAGVFRVDPRTGRILAPNEV
                     LEQQPLEDVEQPVVEEVQ"
     gene            187..>3488
                     /locus_tag="VIJ87_12455"
     CDS             187..>3488
                     /locus_tag="VIJ87_12455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445251.1"
                     /translation="MSDAYVDMTRDEYIAKYGKDPNDVLAEQAGSGGIKDHLKALAVG
                     VATTPTDILALPGLAYSGASALYRSYADDTKFMDEFAKNIQVEDAQKNITNHLNEVAN
                     SWKASNPQLDDDTINSGLEQYKKSKQFEDFTTEQLSGSAYLATKAKDTVRRLLGDERP
                     SNQRSWTESAAEIAGGALIPGPAGWATKLGTRAAGNAVTNAIVNNPASRVALKGAELL
                     TPLTMPYTGTNVAANAAVGVGIDQAIRYAQDKPTAFTPTPTDSAGVGALAATGAGIAG
                     LAAFVGAVKGRSREVLAASEAARTSTARALEEQGSVNIRTAAEPRVGEPTIVAGAEQR
                     LYAEPSQSTMNKPTSLIQRATTQLVDEGYGPLAEIRRTHGGDEANWMEALRSGSGSVL
                     HDTAPAEAEAVTRELFQAIDNLPNADMRAALDGGIMSTLMSRHRVIERELVEKIDNLE
                     KTLKDPASSTELTKAKVDLARLRDDADASARVALPEIPTSQKQAIAHAFENDPSPEMQ
                     QVRDAWKKMNDDLIAVRVSSGKESPTAATRMRAQDPYYMPIINDPLKGLTGFNRVWRS
                     AMNSVDNAMTRDAEGATRAMARESPIHEFKREVPPVRGLNEPETRITAVQDPRTSIAR
                     YAQDIYREEALTRSRNEGIRLLTTKKDGTPSDLVSNGNIRAMRDPTTNAEWIPNNKLE
                     TPYVQKAMSDPHVVPQWENGNVKFWEIGDRDYAAWLRQDPVRFNGMMKTLGVTSRWFK
                     FFTTGRGNPIFTLKGAAYDLLVGILTRMPNRSFGTLSYLGNRFLPESIAKHVIGRIPD
                     PTALVTVPYHAAMAVSEMLAHYATRKIADGLSSLEPFNAFRRAVGERNYHAMVGASLK
                     VASMAENFATVKMQRFGAARGNRDIDNVAQVRGHYEAIKEMVPSPLKGAWRFYTDVLD
                     SVYLAPKRMFYTENYALLHAKYGGNIPEKEMVKLQYETRAIGGDMSKVPASKGMKDLE
                     VAMPYLSQTKLGAWHLMRHMGSPETASYMLPRLALMTYAVGQSYYWRTYWNEESRKDL
                     WERTPEYDRWRSFDVPTPQLLWAWYKGENPNFNRKLFYRITLPPDFTGIIASATAMMQ
                     MMGMIPGSATPRP"
BASE COUNT          915 a          817 c          966 g          790 t
ORIGIN      
        1 tcctgctgct gcttctacta taccgggcgg tgtagtgttc aacagcggca ctgcagtgcc
       61 accgcctccc ggtggtgcag gtgtgtttag agtagaccca cgtacaggta ggatactcgc
      121 tcctaatgag gtgttagaac aacagccact agaagatgta gagcagcctg ttgtcgagga
      181 agtacaatga gcgatgccta tgtcgatatg acgcgtgatg agtacatcgc caagtacggc
      241 aaagacccca atgatgtgct agctgagcaa gctggtagtg gtggtattaa agatcacctc
      301 aaggcgctcg ctgtcggcgt tgctactaca cctactgaca tactcgcact gccgggacta
      361 gcgtactcag gtgccagtgc gttatacaga tcatatgcag atgacacaaa gttcatggat
      421 gagttcgcca agaacattca ggttgaagac gcacagaaga acatcaccaa tcacttgaat
      481 gaggttgcta actcgtggaa ggctagcaat ccacaactgg atgatgatac catcaactca
      541 ggcttggaac agtacaagaa atctaaacaa ttcgaggatt ttaccaccga acagcttagc
      601 ggtagtgcat acttagcaac gaaagctaag gacactgtgc gtaggttgtt aggtgacgag
      661 cgtccctcaa atcaacgcag ttggacggag agcgctgcgg agattgcagg tggtgcactt
      721 atacctggcc ctgctggttg ggctactaag ttgggtactc gtgctgctgg caatgcagtt
      781 actaacgcga ttgtcaataa ccccgctagt cgtgttgcac tcaagggtgc tgagttgctc
      841 actccactta ctatgcctta caccgggaca aacgtagcag cgaacgccgc agttggtgtt
      901 ggtatagatc aagctattcg ttatgcacaa gacaagccta cagcattcac gcctacgccg
      961 actgatagcg ctggcgttgg tgcattagct gcaacaggtg caggtatagc aggactagct
     1021 gcattcgtcg gcgctgtcaa gggccgcagt cgtgaggtgc tagctgctag cgaagctgcg
     1081 cgtactagca ctgcacgtgc actagaggaa caaggttctg tcaacatacg cactgctgct
     1141 gagccacgtg taggtgagcc tactatcgtc gctggtgctg agcaacggct atacgctgag
     1201 ccttcgcaga gtactatgaa caagcctact agtctcattc aacgagctac aacgcagctt
     1261 gttgatgaag gctatggacc actggcagag attagacgca cacatggcgg tgatgaagcg
     1321 aactggatgg aggctcttag atcaggtagt ggttcggtgt tgcatgatac agcgcccgcg
     1381 gaggctgaag ctgtcacacg tgagttgttt caagcaatag acaatctacc caatgctgac
     1441 atgcgtgctg cgctagacgg cggaataatg tcaacgctta tgtcgcgtca tagggtgatt
     1501 gagcgtgagc ttgtagagaa gatcgacaac ttagagaaga cacttaaaga ccctgctagc
     1561 agcactgagt tgaccaaggc caaagttgat ctagcacgcc tcagagatga cgctgatgca
     1621 agtgcgcgtg ttgcactacc ggagatacct acttcgcaga agcaagctat agcacacgca
     1681 ttcgagaatg atccatcgcc tgagatgcaa caggtcaggg atgcgtggaa gaagatgaat
     1741 gatgacttga ttgcggtgcg tgtgagtagt ggtaaggaaa gtccgactgc tgctactagg
     1801 atgcgtgcac aagaccctta ctacatgcct atcatcaatg acccactgaa aggactaaca
     1861 ggcttcaatc gcgtatggcg ttcagccatg aacagcgttg acaacgctat gacacgtgac
     1921 gccgagggtg ctactagagc aatggcacgt gaaagtccta tacatgagtt caagcgagag
     1981 gtgccacctg tacgtgggct gaatgaacct gagacacgca ttacggctgt acaagacccg
     2041 cgcacttcca tagctagata cgcgcaggac atatacagag aggaagcact aactcggtcg
     2101 cgcaatgaag gcattaggtt gctgactact aaaaaagatg gaacgccatc tgacctagta
     2161 agcaatggca acatacgcgc catgcgtgat cctactacta atgcggagtg gataccaaat
     2221 aataagcttg aaacgccgta tgtacagaag gcaatgagtg atcctcatgt tgtgcctcag
     2281 tgggagaacg gcaacgtcaa gttctgggag ataggtgatc gtgattatgc agcgtggctg
     2341 agacaagacc ctgtacgctt caacggcatg atgaagacgc taggtgtcac gagtaggtgg
     2401 ttcaagttct ttactacagg tcgtggcaat cctatcttca cactcaaagg tgctgcttat
     2461 gatctgctag tgggcatctt aacgcgcatg cctaacaggt cgtttggaac gctgagctac
     2521 ttaggcaacc gcttcctgcc tgagagcatt gctaagcacg ttataggccg tatacccgat
     2581 cctactgcac tggtcactgt gccatatcat gcggctatgg ctgtatcgga gatgcttgca
     2641 cactatgcaa cgcgcaagat cgctgatggc ttgtctagcc tagaaccatt caacgcattt
     2701 cgccgtgctg taggcgagag gaattatcat gcgatggtcg gcgcgtcgtt gaaggttgct
     2761 tcaatggctg agaacttcgc cactgtcaag atgcagcgct ttggtgcagc acgtggtaac
     2821 agagacatag ataatgtagc gcaggtgcgt gggcactatg aagctatcaa agagatggtg
     2881 cctagtccat tgaaaggtgc atggcgcttc tacacagatg tgcttgacag tgtgtatctc
     2941 gctccaaagc gcatgttcta caccgagaac tatgcactgc tacatgccaa gtacggcggt
     3001 aatatacctg agaaggagat ggtcaagctg cagtacgaga cacgtgctat tggtggcgac
     3061 atgtcgaagg tgccagctag caagggcatg aaggatttag aagttgctat gccctacctg
     3121 tcgcagacga agttaggtgc gtggcacttg atgaggcaca tgggtagtcc tgaaactgct
     3181 agctacatgt tgcctaggct ggcattgatg acgtatgctg ttggacagag ctactactgg
     3241 cgcacgtact ggaatgagga aagcaggaaa gacctttggg agcgtacacc tgagtatgac
     3301 aggtggcgta gctttgatgt gcctacaccg cagttgttgt gggcatggta caaaggtgag
     3361 aaccctaact tcaatcgcaa gctgttctac cgtataacac tgccgcctga cttcacaggt
     3421 atcattgcca gcgcaacggc gatgatgcaa atgatgggca tgatacccgg cagtgctact
     3481 cctagacc
//
LOCUS       DATCGC010001290         1805 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_150859, whole genome shotgun sequence.
ACCESSION   DATCGC010001290 DATCGC010000000
VERSION     DATCGC010001290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1805)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1805)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1805
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150859"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..401
                     /locus_tag="VIJ87_12460"
     CDS             <1..401
                     /locus_tag="VIJ87_12460"
                     /inference="COORDINATES: protein motif:HMM:NF014699.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit C"
                     /protein_id="HEY5445252.1"
                     /translation="GYFRSRPSAAGVVGYDAGASSGSNLGPTNQKLIDRVKANVDKLK
                     IENPGKPVPIDLVTTSGSGLDPHISPAAAEFQIPRIARERKLTEAVVRNLVAAHTEGR
                     DFGFLGEPRVNVLELNLDLDMTKPNVMNAP"
     gene            427..1593
                     /locus_tag="VIJ87_12465"
     CDS             427..1593
                     /locus_tag="VIJ87_12465"
                     /inference="COORDINATES: protein motif:HMM:NF014728.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEY5445253.1"
                     /translation="MIEGKQRPAPESLLAKLSEAEQARLRVYIGAAPGVGKTYQMLED
                     AHLMKKQGVDIVVAVVETHGREDTKAMIGDLECVPMHRIEYRGVTIEEMDVDAVVARR
                     PAIAIVDELAHTNIPGSKNSKRYQDVLDLLKAGISVITAVNIQHLESLNDVVNRTTGV
                     RVRETVPDHFLSRADEVVNVDVSVDTLRTRLRQGKIYDVVKIEQSLNNFFRKGNLLAL
                     RELALRQVATDQATKAHDYREREGLDQAVIPEKLMVAMASHGSAKKLLRVGSRIAGRL
                     ASDWYAVYVETPNEEMGRIKPEDYVALQENIRFAEELGAKVVKLKSRRVVDALIDFAS
                     NEGITHVVFGQTSRSRWDILLHGSIINRFLREVRDATVQVVPLMKREEEIKEEV"
BASE COUNT          484 a          451 c          481 g          389 t
ORIGIN      
        1 ctggttactt tcgatcgcga ccatcggccg caggcgtagt tggttatgac gcaggcgcct
       61 cgtcaggttc aaacctcgga cctaccaatc agaaactgat cgaccgcgtc aaagcaaacg
      121 tcgacaaact gaagattgaa aatcccggta agcccgttcc aattgactta gtaacaacct
      181 ccggttctgg cctcgatcca cacatatcac cggcagcggc cgaatttcag ataccgcgca
      241 tagcgcgtga aagaaaacta accgaggccg tcgtccgaaa tctggttgcc gcgcatacag
      301 aaggcagaga cttcggattc cttggagaac cgcgcgtaaa tgtcctcgaa ctcaacctgg
      361 atcttgatat gacgaagcca aacgtaatga acgcgcctta agacagagga gagctgcaaa
      421 agctggatga ttgagggaaa acagagacct gctcccgaat cactgctcgc taaactgagt
      481 gaagccgagc aggcacggct tcgtgtttac atcggcgcgg ctcccggtgt cggaaaaacc
      541 taccagatgc ttgaagacgc tcacctgatg aaaaagcagg gcgtggatat tgtcgttgcg
      601 gtagtggaaa ctcacggacg cgaagacacc aaggcgatga ttggcgactt ggaatgcgta
      661 ccgatgcatc gcattgaata tcggggagtc actattgaag agatggacgt cgatgctgtt
      721 gtcgctcgtc gaccggcgat cgcaattgtt gatgaactcg ctcatacgaa tattcctggc
      781 tccaaaaact caaagcgata tcaggatgtc ttggatctgc tcaaagccgg aatctccgta
      841 attacggccg taaacattca acaccttgaa tctctcaacg acgtcgtcaa tcgcacgacc
      901 ggcgttcgtg tccgcgaaac agttcctgac cactttctaa gtagggcaga tgaggttgtt
      961 aacgtcgatg tatccgtcga cacgctccgc acccgcctgc gccagggaaa gatctatgac
     1021 gtcgtaaaga ttgagcagtc gctaaacaac ttctttagga agggaaatct tttggcgcta
     1081 cgcgaacttg ccttaagaca agttgcgacg gaccaggcga ccaaggcaca cgattaccgc
     1141 gagcgcgaag gacttgatca ggcagtcatt cccgaaaaac taatggttgc catggcttca
     1201 catggaagtg ccaagaagtt gcttcgtgtc ggatcgcgta tcgcgggacg actagcgagc
     1261 gactggtatg cggtctacgt ggaaacgcca aacgaagaaa tgggaagaat aaagcctgaa
     1321 gattatgtag cccttcagga aaatattcgg tttgcagaag agctgggagc caaagtcgtc
     1381 aagttgaaat ctcgtcgcgt ggtcgacgcg ctgatcgatt tcgcatcgaa cgaaggcatc
     1441 acgcatgtcg tttttggtca aacgtccaga tcccgctggg acattcttct acatggttcg
     1501 atcatcaatc gtttcttacg cgaagtgcgc gatgcaacgg tgcaagtagt gccgttgatg
     1561 aagagagagg aagaaataaa ggaggaggtg tagttgctcc ggtgcaatag ccccggtgca
     1621 gtagcgcccg gtgcagtagc ccgactgtca aggagggcta aacaggaata tcaatccgtt
     1681 agttcccctt gtcagtcggg ctactgcacc aaccaaagac ctaagaacca atgaacttac
     1741 gcaacaaact cctaattacc tatctagttt ttgatgccgc tctgctggtg cttggcggct
     1801 ggagt
//
LOCUS       DATCGC010001291         1051 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_320057, whole genome shotgun sequence.
ACCESSION   DATCGC010001291 DATCGC010000000
VERSION     DATCGC010001291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1051)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1051)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1051
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_320057"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            346..>1051
                     /locus_tag="VIJ87_12470"
     CDS             346..>1051
                     /locus_tag="VIJ87_12470"
                     /inference="COORDINATES: protein motif:HMM:NF028457.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5117 domain-containing protein"
                     /protein_id="HEY5445254.1"
                     /translation="MRMRSRYLPVSILVLLFVVSAAIFATRSHAQDPQTPPTGAPTGA
                     QGEGQGFPNRGAQTAEPRPYERVITKDAKTDEGIFTVHTIKDKDYYEIPKSELNKEFL
                     WVSQIARTTLGVGYGGQAAGNRVVKWERRGNRIFLRNVSYDVVADSRLPVSRAVQAAN
                     NDTIIMAFNIEAFGKDESAVIDVTRLFTTEVTELSARTRLRARGFDPTRSFIDKTKSF
                     PTNIEVEVSQTYTSPPD"
BASE COUNT          260 a          291 c          253 g          247 t
ORIGIN      
        1 cactaaccac taccaccaag tcggccgctc gccgcccggt cgtaaatcgt cgcgtctgag
       61 cgctacgtct tcgctttatc tatgctgctg tgttgaaatc ctctttgtgg acggtgcaag
      121 tactctttac aaaactttac atagaaggac ctgcttttgg agtggttcta cgttgactcg
      181 gatacctcgc tgacttatct tcctcacagt tcaacctggg tttgccccgc gattaatttc
      241 aacgattcaa ggcagagagc cacccgtaag ggaattggct cgctcaccgg acgcggagcc
      301 ggcccgcact cgacaattca tcaaccgatc ggaaggagta aacgcatgcg aatgcgatcc
      361 aggtatctcc ctgtctcgat tcttgttctg ctgttcgttg tatcggcggc gatctttgcc
      421 acgagatcac atgctcagga cccacaaaca ccgcctacag gtgcgcctac tggtgcacaa
      481 ggtgaaggtc aaggattccc aaatcgtggg gcccaaacag ctgagccacg accatatgaa
      541 agggtgataa cgaaagatgc taagacagac gaaggcattt ttactgttca caccattaaa
      601 gacaaagact attacgaaat tcctaagagc gaactcaaca aagagtttct ttgggtaagt
      661 cagatcgcgc gcactacatt gggcgtcggc tacggtggcc aagcggccgg caatcgcgtc
      721 gttaaatggg aacgccgagg caatcgcata tttcttcgca acgtttccta cgatgtggtt
      781 gctgattcaa ggcttccggt ttcccgtgca gtccaggccg cgaacaacga caccattatc
      841 atggccttca atatcgaagc ctttggtaag gatgaatctg cggtgatcga tgtaactcgc
      901 ctcttcacga cggaagtaac tgagttaagc gcccgcacca gacttcgcgc acgcgggttt
      961 gatccgacgc gttcattcat tgacaagacc aagtccttcc cgaccaacat tgaagtcgaa
     1021 gtttcgcaaa cctacacttc gccaccagac g
//
LOCUS       DATCGC010001292         1349 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_384243, whole genome shotgun sequence.
ACCESSION   DATCGC010001292 DATCGC010000000
VERSION     DATCGC010001292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1349)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1349)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1349
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_384243"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..335
                     /gene="lepB"
                     /locus_tag="VIJ87_12475"
     CDS             <1..335
                     /gene="lepB"
                     /locus_tag="VIJ87_12475"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEY5445255.1"
                     /translation="TPPRKPNETYDVYYRPGDDEDDFVYDVFTKAGNGKEVVIPANKY
                     FVMGDNRDNSEDSRFWGFVPRDLVIGRAMFVYWSYDESAPSSGPGIGIIVDFFKNTRW
                     SRTGTLVK"
     gene            468..>1349
                     /locus_tag="VIJ87_12480"
     CDS             468..>1349
                     /locus_tag="VIJ87_12480"
                     /inference="COORDINATES: protein motif:HMM:NF013117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HEY5445256.1"
                     /translation="MSFWQHLQQASQLNGAFVWVTLLFLAVSFVLFALLPRERLRIRT
                     ALLLFVLSFLGLVVAAITARRGNLDTSFYCWTVWAALLLQGISFVGVASSFIFDILLA
                     AIRLRPPRILRDLILAFAYIVVGITSLSIIKVDVTGIVATSAVLTAVIGLSFQDTLGN
                     MMGGMALQMERAIAVGDWIRIDEREGLVKEIRWRHTSIETRNWDTVIIPNSVLMKSQV
                     LVLGRRSGSPRQHRQWVHFNVDFRYSPPDVIEAVQSALRAEPIPNIARTPQPDCILLD
                     FKESYAHYAVRYWLTDLA"
BASE COUNT          291 a          348 c          342 g          368 t
ORIGIN      
        1 acactccgcc gcgtaaaccc aatgagactt acgacgttta ctaccggccg ggagacgatg
       61 aagacgattt tgtctacgat gtctttacta aggctggcaa tggaaaagag gttgtcattc
      121 cggcaaacaa gtatttcgtg atgggcgata atcgagacaa cagcgaagac agccggttct
      181 ggggattcgt gccgcgtgat ctcgtgattg gccgcgcgat gtttgtctac tggtcttacg
      241 atgaaagtgc gccgagcagt gggccgggta tcggaatcat tgttgatttt tttaagaaca
      301 ctcggtggag tcggaccggt acgttggtta aataactctt cgaaaaacca caaagcgaaa
      361 gggcagactg tatcgtctgc ccttttcttt tggcagagtc actctcaaga ccgtgctaga
      421 attcgtgcgc tctatttcga cccacactgt cttcgcaaat cctttctatg agtttctggc
      481 agcatctcca acaggcttca caattaaatg gtgcgtttgt ttgggtgact ctgctcttct
      541 tagctgtgtc cttcgtcctc tttgcgctat tgccaagaga acgattgaga attcgtacgg
      601 cactactcct cttcgttttg tcgttcctgg gtctggtggt tgctgccata accgcacggc
      661 gaggcaatct ggacacgtcg ttttattgtt ggactgtttg ggccgccctt ctattgcagg
      721 gtatctcatt cgtcggagta gcaagcagtt tcattttcga tatccttctc gccgctattc
      781 gactgcgacc gcctcgaatc ctccgtgatc taatcctggc tttcgcttac atcgtggtgg
      841 gaattacatc gctgtcgatc attaaggttg atgttaccgg aatcgttgcc acgtcggctg
      901 tactcaccgc agtaatcggt ctgtcgttcc aggacacgct tggaaacatg atgggcggaa
      961 tggcgctcca gatggaacgc gcgattgccg taggcgactg gattcgcatt gatgaacgtg
     1021 aaggcctggt taaggaaatc cgttggcgac acacctcaat cgaaacacgc aactgggaca
     1081 cggtcatcat tcccaacagc gtgttgatga agtctcaggt cctcgtcctt ggccgcagat
     1141 ctggatcacc aagacaacac cgtcagtggg tacatttcaa tgtagacttt cgctactcgc
     1201 ctcctgatgt gatcgaagct gttcagtcag ctttgcgcgc tgaaccgatt cctaacattg
     1261 cccgtacgcc tcaacctgac tgcatcctgc tcgacttcaa agagagctat gcacactacg
     1321 cggtgcgcta ctggctcacc gatctcgct
//
LOCUS       DATCGC010001293         1405 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_217202, whole genome shotgun sequence.
ACCESSION   DATCGC010001293 DATCGC010000000
VERSION     DATCGC010001293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1405)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1405)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1405
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_217202"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..503
                     /locus_tag="VIJ87_12485"
     CDS             <1..503
                     /locus_tag="VIJ87_12485"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY5445257.1"
                     /translation="AGFATTVFATLISAFSVAFSQTSGQRPVLNSRSSAIKLEQTPND
                     DQKPLFKGVVKDINGAVILNAEIVLVNSATKQKRTAFSANEGTFVFEDIVQGMYELNI
                     KAQGFKTLHRPFLFLGQGEDTTAEIALAVGEPEGLILTGFVASSLPQYDNGEPIRLVP
                     ATRKHD"
     gene            770..>1405
                     /locus_tag="VIJ87_12490"
     CDS             770..>1405
                     /locus_tag="VIJ87_12490"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY5445258.1"
                     /translation="MQDQLKNLRVASPCHVGWESMSGNDRVRFCESCQLNVYNLSEMT
                     SDEVRSLIVKSEGRLCGRMYRRADGSILTRDCPVGLRAVRLRVAKFAGAVFATMFSVC
                     SIAFSQTKTDKKQSPKTSNYKIEVTARESSGCLTGKLLDTAGASIARAEVTLRSPRVT
                     ETKVNSDDNGEFTFGGLIDGHYSLSVSSPGFVDLQVPDISINANQAYRATIT"
BASE COUNT          374 a          340 c          358 g          333 t
ORIGIN      
        1 ttgccggttt tgctaccaca gtttttgcca ctttgatatc tgctttttca gtagcctttt
       61 cgcaaactag tggtcagagg ccagtgttaa atagtcgtag ctccgccatc aaacttgagc
      121 aaacgcctaa cgacgatcag aagccgctct ttaagggtgt tgtgaaggac atcaacggag
      181 cagttatcct caacgccgag atcgttctcg tcaacagtgc aacaaagcag aagcgtacgg
      241 ccttttccgc aaatgagggc acgttcgttt ttgaagatat cgtccaaggc atgtatgagc
      301 tgaacatcaa agcacaaggg tttaagactc tacaccggcc gtttctcttc ctcggacaag
      361 gtgaagatac aacggcggaa atagcactgg cagtgggtga gccagagggc ttgatcttga
      421 ctgggttcgt cgctagcagc ctcccacaat atgataacgg tgaacccatt agattggttc
      481 cagcgactcg gaaacacgac taacactgtt cacgtgtctc gaacgcatga ccactaacaa
      541 taacctgctt cgaaatctcc gtgtcgctac gccttgtcat gttggctggg aaaacatgac
      601 cgggagccgt gtcagttcag gtccattttg acgaagagtc tataacaagc gcgaacatga
      661 ttaaggaact agaccttttc atgaaacaac aacccaaacc gaagaactga aaagcctctt
      721 tgatctggtt gtgtcagaaa tagaccaaca ttggtaagga cacacactta tgcaagacca
      781 actcaaaaat ctcagagtcg catcaccctg tcatgttgga tgggaaagca tgtctggcaa
      841 tgaccgcgta cgcttttgcg agtcatgcca gctcaacgtt tacaacttgt cggagatgac
      901 cagcgatgag gtcaggtcgc tgatcgttaa gtccgagggc cggctctgcg ggcggatgta
      961 tcgacgggct gatgggtcga tattgacgcg tgattgtccg gttggactaa gggcggtgag
     1021 gttgagagtc gcgaagtttg ccggtgcggt attcgcgacg atgttcagcg tttgctcgat
     1081 tgcattttcg caaacgaaaa cagataagaa acagtctcct aaaacttcca actacaagat
     1141 cgaagtgact gcccgggaat caagcggatg cctaacggga aaactgctgg atactgcggg
     1201 cgcttccata gctcgggcgg aagtcacgtt gagaagcccg cgcgtgacag aaacgaaagt
     1261 taactctgac gacaatggcg aattcacgtt cggcggtttg atcgatggcc actactcatt
     1321 gagtgtgtca tcaccagggt tcgtcgacct ccaggttcca gatatctcaa tcaatgccaa
     1381 tcaagcttat cgtgcaacta tcacc
//
LOCUS       DATCGC010001294         1732 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_485070, whole genome shotgun sequence.
ACCESSION   DATCGC010001294 DATCGC010000000
VERSION     DATCGC010001294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1732
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_485070"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..698
                     /locus_tag="VIJ87_12495"
     CDS             <1..698
                     /locus_tag="VIJ87_12495"
                     /inference="COORDINATES: protein motif:HMM:NF020130.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="3-oxoacyl-[acyl-carrier-protein] synthase III
                     C-terminal domain-containing protein"
                     /protein_id="HEY5445259.1"
                     /translation="GQIPCLDIRQACCNPLYALQIAMALIGSNLASRVAICLAEIQSA
                     WLDMSPESGTTSMLFGDGASALIVSGDTSSNSLEVIDIALATDGGYVDDLGVRGPGTE
                     FGTAASGNENSKPRMVGQSVILNASRKIMAACQDVLKRNSLQVADIRWLVPHQANANL
                     LAQIARGLHFPVENGGLISVLEDLGNTSSASMGIALDSLRRSARIGPGDYLLLPAFGA
                     GFSWGAGLCRATS"
     gene            complement(706..>1732)
                     /locus_tag="VIJ87_12500"
     CDS             complement(706..>1732)
                     /locus_tag="VIJ87_12500"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY5445260.1"
                     /translation="LTPPPDDVRKFLSLPNVTLEILEDSIGVNKAGALGLWRILRRHR
                     PEIVHLHFINFLGLFPWIARIAFVKKVFITDHGSRPAGYVPRRAPMWKRTLVRLINLP
                     LTRVTCVSNYGYRCFTALDLLPKDRFKMIYNSVDLTRVAPNAKLGTEFRMRFGIPADR
                     KIVLQVSWIIPEKGIPDLLEAARLVVQQNDKVHFVLVGEGAFRQQYTEDAKRMGLEGH
                     ITWAGLIADPFGEGVYDAADIVCQVSNWEEVFGWVIAEAMAYMKPVIGTRVGGIPELV
                     LDGETGFLVERSDSAAIADRIVRLATDEASRERMGHAARKITEEKFNLRKNVAQLVEC
                     YGLGNDR"
BASE COUNT          427 a          448 c          452 g          405 t
ORIGIN      
        1 taggtcagat tccgtgtctt gatatacgac aagcctgctg caatccactt tacgcgttgc
       61 aaattgcgat ggcattgatc ggctccaacc tggcaagtcg cgttgcgatt tgcctggcgg
      121 aaatccaatc agcctggctc gacatgtcac cggagtcagg tacgacctca atgctttttg
      181 gtgacggcgc atcggcgtta atcgttagtg gcgacactag ttcaaattca ttagaagtga
      241 tcgacatcgc gttagcgacc gatgggggtt acgtcgacga cttgggagtg cgtggaccgg
      301 gcaccgagtt tggaactgcg gcgagtggca atgaaaactc gaagccgcgc atggtaggcc
      361 agtcagtgat acttaatgct tcgagaaaaa tcatggctgc ctgtcaagac gtgctaaagc
      421 gcaacagttt gcaggtagcc gatattcgct ggcttgttcc acatcaggct aacgctaact
      481 tgctggccca aatcgcccgg ggtttacact tcccagttga aaacggcgga ctcatttcag
      541 tacttgagga tctcggtaat acgtcctccg cgtcaatggg aattgcactg gatagtttgc
      601 ggcgttccgc ccgaattggg cctggggatt atttgctgct accggctttt ggagcggggt
      661 tcagttgggg agccggactc tgtcgcgcaa caagttgaag ttaagttatc tatcgtttcc
      721 caagccgtaa cattcaacca actgtgccac gttctttcgg aggttgaatt tctcttcagt
      781 gatcttacga gcggcgtgac ccatccgctc tcgcgacgcc tcatcggtcg ccagtctgac
      841 aattcgatcg gcgatggctg cagagtcgct gcgctcgacc aaaaacccag tctcaccatc
      901 caggaccaat tccggaatac cacctacacg ggtaccgatc acaggtttca tgtacgccat
      961 tgcttcggcg atcacccaac caaaaacctc ttcccagttt gagacctggc aaacgatgtc
     1021 ggctgcgtca taaacgccct caccaaacgg atcggcaatc aaccctgccc aggtaatgtg
     1081 accttccaat cccattcgct tcgcgtcttc agtgtactgt tgcctgaaag cgccttcgcc
     1141 aactaagaca aaatgaacct tgtcgttttg ctgaactaca agacgggcag cttccaacaa
     1201 atccggaatg cccttttcgg gaatgatcca actgacttgc aggacaatct tgcggtcagc
     1261 aggaatacca aaccgcatcc gaaactcagt tccaagtttc gcgttgggag caacacgcgt
     1321 gagatcgacg ctgttgtaga tcatcttgaa ccgatctttg ggaagaagat ccaacgcagt
     1381 gaaacagcga taaccgtagt tactaacgca cgtcactctt gtgagcggca gattgataag
     1441 tcgaacgagc gtccgtttcc acatgggagc gcgacgaggc acatagcccg cgggacgcga
     1501 accgtgatcg gtgataaaaa ctttcttaac gaaagcgatt cgcgcaatcc agggaaagag
     1561 gccgaggaaa ttaataaagt gaaggtgaac aatttcgggg cgatgccggc gtagaattcg
     1621 ccataaacca agggctccag ctttatttac accaatggaa tcttccagga tttcgagagt
     1681 gacgtttggg agggaaagaa actttcgtac gtcatctgga ggtggtgtca gg
//
LOCUS       DATCGC010001295         1704 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_320087, whole genome shotgun sequence.
ACCESSION   DATCGC010001295 DATCGC010000000
VERSION     DATCGC010001295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1704
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_320087"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..206
                     /locus_tag="VIJ87_12505"
     CDS             <1..206
                     /locus_tag="VIJ87_12505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445261.1"
                     /translation="KPLAFRELVIQMRLRLGGAAAKRIAVLTESQRLSARKAAKPENH
                     PKGLSRRAWGSEVYLDEFTWGLE"
     gene            complement(214..>1704)
                     /locus_tag="VIJ87_12510"
     CDS             complement(214..>1704)
                     /locus_tag="VIJ87_12510"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HEY5445262.1"
                     /translation="QFRGYIGTIIDITDRKLAEQAVRDSETRFRQMADSAPVLIWTAD
                     SEGSVTYLNQRCLDFTGRPMEQLTGDRWLQIVHDDDRQACFDAYTSAYESRAPFVIEY
                     RIRHANGEYRWLYDTGVPRFGKNNKLLGYIGSCVDMSERKAAEEALQASHEEVNRLKN
                     QLEAENIYLQEEIRLAHNINEMVGDSKAIKNVLVKIEQVAQTDTSVLILGETGTGKDL
                     VARAIHSHSDRKDRSFVKVNCAALSPSLIESELFGHEKGAFTGALARKIGRFEVADGA
                     TIFLDEIGELPLELQPKLLRVIQEGEFERLGSAKTMKVNVRIIAATNRDLKLEVQKGT
                     FREDLWYRLNVFPITLPPLRQRKEDIPLIVEHFTRVFSKKVGKSITSISAATMKMFQE
                     HSWPGNVRELSNVVERTLVTAQGPVLHVVEQFEQKDTEASEFGKTLEEVERDHITSVL
                     EQTGWRLEGPTGAARVLGLNPSTLRTRMLKLGIQKSIKAESVLRRA"
BASE COUNT          407 a          449 c          391 g          457 t
ORIGIN      
        1 gaaagcctct ggctttccgt gagctcgtaa tacaaatgag gcttcgcctc ggcggcgcag
       61 ccgcaaaaag aattgcagtc ttgacggaaa gccagaggct ttccgcacgg aaggcggcga
      121 agccggagaa ccatcccaag ggtttatcta gacgagcgtg gggatcagag gtttatctag
      181 acgagtttac gtggggatta gagtaggttt cagttacgca cgccggagaa cgctctcagc
      241 cttaatgctc ttttgtatac ctagcttcag cattctcgtc cgcagcgtac ttggattgag
      301 cccgaggacg cgagcagcac cagttggacc ttcgagtcgc catcctgttt gctcgaggac
      361 gctggttata tgatcccttt caacctcctc gagtgtcttg ccaaattcgg acgcttccgt
      421 atctttttgt tcgaactgtt ccacgacatg aagaaccggt ccttgagctg tgactaaggt
      481 acgctcgaca acgtttgata gctctcgaac atttccgggc caggagtgtt cctggaacat
      541 cttcatggtc gctgcggaga tcgaagtaat actcttcccc accttcttag aaaacactcg
      601 tgtaaaatgt tcgacgatca gtgggatgtc ttcttttcgt tgccgcaaag gtggcaaggt
      661 aattgggaaa acgttcaatc gataccaaag atcctcacgg aaagtaccct tctgaacctc
      721 caacttcagg tcacgattcg tagcggcgat aatacgaaca ttaaccttca tggtttttgc
      781 gctgccaagc ctttcaaact caccttcctg aatcacgcgc aataacttcg gctgcaactc
      841 aagcggcaat tcaccaattt catcgagaaa gattgtcgct ccatctgcca cttcgaacct
      901 gccaattttg cgtgcaaggg ctccggtaaa agcgcctttc tcatgaccaa acaattcgct
      961 ttcgatcaaa cttggcgaca atgccgcaca gttaactttt acgaaagaac ggtccttgcg
     1021 atcgctgtga ctatgaattg cacgcgcaac taagtccttg cctgtgccag tttcccccag
     1081 gattagtacg ctggtatcgg tttgggccac ctgttcaatc ttaacaagca cgtttttgat
     1141 tgccttgctg tcgccaacca tttcattgat gttatgagcg agtctgatct cctcctgtaa
     1201 atagatattt tctgcttcga gttggttctt cagtctgttt acttcttcgt gcgaagcttg
     1261 aagggcctct tcggcagctt tacgctcgct catatcaacg catgaaccga tatatccgag
     1321 aagtttattg ttcttaccga aacgaggaac accagtatcg tagagccatc gatactctcc
     1381 gttcgcatga cgaatcctgt actcaattac gaacggagcc ctgctttcgt aagcgctggt
     1441 atatgcatca aaacacgcct gtctatcatc gtcgtgcacg atttgtaacc agcgatcgcc
     1501 agttagctgt tccataggtc gaccggtaaa gtccaaacat ctctgattta gataagtgac
     1561 actaccttcc gagtcagccg tccaaatgag gacaggagca ctatcagcca tctgtctaaa
     1621 tctggtctca ctatcgcgca ccgcctgctc cgcaagcttg cggtcggtaa tgtcaatgat
     1681 ggtccctatg tagccacgga attg
//
LOCUS       DATCGC010001296         1371 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_185887, whole genome shotgun sequence.
ACCESSION   DATCGC010001296 DATCGC010000000
VERSION     DATCGC010001296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1371)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1371)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1371
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185887"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..924)
                     /locus_tag="VIJ87_12515"
     CDS             complement(<1..924)
                     /locus_tag="VIJ87_12515"
                     /inference="COORDINATES: protein motif:HMM:NF013079.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M17 family peptidase N-terminal
                     domain-containing protein"
                     /protein_id="HEY5445263.1"
                     /translation="MQVEASQGPIENVDVQAIAVAVFKGEKPDDGFLKKVDELSGGLV
                     KSTIDAEEFSGKEGEMAYFHLMGNDKLKARRLLLVGVGPLDEYKTSSVSIMAGTAVRS
                     LRAKNAKSIAVVPRLNGNAESTSSAAVQGAFISIFDPDKYRTVDKEDKKVDRVVVVIE
                     GAADDVLTRGANAGRIIGESMNFTRDLANEPGAYMTPTDMAERAREVANEFGLSIDVL
                     DEARMEQEGMGSLLSVSHGSDQPAKLIILKYVPANFDDSNTELLAFVGKGVTFDSGGI
                     SLKPGENMELMKYDMTGGATVIGAMRAIAQLK"
     gene            complement(968..>1371)
                     /gene="smpB"
                     /locus_tag="VIJ87_12520"
     CDS             complement(968..>1371)
                     /gene="smpB"
                     /locus_tag="VIJ87_12520"
                     /inference="COORDINATES: protein motif:HMM:NF003843.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HEY5445264.1"
                     /translation="SDKYEAGIALTGTEVKSAMEGRVQLKEAYVSVRDGEAWLFNAHI
                     SPYSHGNRENHEPLRTRKLLLHKKEILRLDDATAKQGMTLVPTQVYLKNGRIKIEVGI
                     AKGKKLYDKREADLKKTVEREARAQLKERNR"
BASE COUNT          291 a          394 c          302 g          384 t
ORIGIN      
        1 ctttaactgt gcgatagctc gcatcgcacc gatgacagtg gcgccaccgg tcatgtcgta
       61 tttcatcaac tccatgtttt cgcctggctt cagcgaaatg ccgccagaat cgaaagtcac
      121 tcccttaccg acgaacgcaa gcaattccgt gttgctgtcg tcgaaatttg ctggaacata
      181 tttcagtatg atgagttttg ccggctgatc agaaccgtgg gacacgctca acagcgagcc
      241 catgccctcc tgctccatcc gggcttcgtc gagcacgtcg atgcttaagc caaactcatt
      301 cgcaacttcg cgagcccgtt ctgccatatc ggtgggggtc atataggcgc ccggttcgtt
      361 tgcgaggtca cgtgtgaagt tcatcgattc gccaatgatc cttccggcgt tggcacctct
      421 ggtcaaaaca tcatcagctg ctccttcaat aacaacgaca actcggtcga ccttcttgtc
      481 ttccttatca accgtgcggt atttatccgg atcgaatatc gatatgaaag ctccctggac
      541 agccgcggaa ctggtcgact cagcatttcc attcagccgt ggaactacgg caatcgactt
      601 cgcattcttc gctcttaagg aacgaactgc ggtaccggcc attatcgaaa cacttgacgt
      661 tttgtattcg tctaagggac ccacgcccac gagcagcaac cttcgtgctt tcagtttgtc
      721 gttgcccatg agatggaaat aggccatctc tccttctttg ccggagaatt cctccgcatc
      781 gattgtcgac ttcacaaggc ccccggataa ctcgtcgacc ttcttgagaa atccatcgtc
      841 gggtttctca cccttaaaaa cggcaaccgc gatcgcctgt acgtcaacat tttcaatggg
      901 cccctggctg gcttcaactt gcatgtgagt gttttctcct gagttggata tctgaatctc
      961 tagtctgcta tctgttacgt tctttcaact gcgccctggc ttctcgttca acggtcttct
     1021 ttagatcggc ttcgcgcttg tcgtacaact ttttaccctt ggcaatacca acttcaatct
     1081 taatgcgccc gttcttcagg taaacctgag tcggcactaa tgtcattcct tgttttgctg
     1141 tagcgtcgtc gagacgcaaa atttcttttt tgtgaagtag tagcttgcgc gtcctcagcg
     1201 gttcgtggtt ttcccgattg ccatgagaat acggcgaaat gtgagcatta aacaaccagg
     1261 cctcaccgtc tcgaaccgaa acataagcct ctttcaactg aacgcgacct tccattgcgc
     1321 tctttacttc cgttccggtt agagcgatcc ccgcctcgta cttatcagag a
//
LOCUS       DATCGC010001297         1667 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_351034, whole genome shotgun sequence.
ACCESSION   DATCGC010001297 DATCGC010000000
VERSION     DATCGC010001297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1667)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1667)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1667
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_351034"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..300
                     /locus_tag="VIJ87_12525"
     CDS             <1..300
                     /locus_tag="VIJ87_12525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445265.1"
                     /translation="VTLSNGIQVAPSAQVRADFMKRLGVKDLYYPDNRIKALGERDGF
                     EVLNLAPSLLSYAEQNGVYLHGFGSDLGSGHWNEKGHAIAAEILGRSFCEGGWLK"
     gene            363..>1667
                     /locus_tag="VIJ87_12530"
     CDS             363..>1667
                     /locus_tag="VIJ87_12530"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HEY5445266.1"
                     /translation="MEFHENVLGLIGNTPLVRLNRLAKGVKAKVFAKMENLNPGYSVK
                     DRIGIAMIEAAEREGLLKPGGTVVEATSGNTGIGLALAASVKGYKCIFVMTDKASVEK
                     SRYLKALGADVVITPVSAKPGTPDHYVSTARRIASETPTSFYPDQYSNPANPEAHYRT
                     TGPEVWRQTDGKITHFVAGLGTGGTISGTGRFLKEKNPAIRIIGADPLGSIFKTFKET
                     GKLVEATPYLVEGIGQEIVPPNVHIKYVDEVINVTDRDSFEMSRLLGRMEGIFCGGST
                     GTNLAAALRVAADLDENAIVVFIVCDTGEHYLTKHHSDEWLKEKRLLEPQRITAGLIT
                     GTKKAQAPKSLISVSPTDTVAVALEKMDELGLTQIPVLEEGKAVGALRESRVLAKVVR
                     DRDLLSTPVSEVMESSFPTVDVDASSNEVTRRLQTSPAVLVEE"
BASE COUNT          410 a          392 c          467 g          398 t
ORIGIN      
        1 gtgacgctta gtaacgggat tcaggtcgct ccgagcgcgc aagtgcgtgc tgatttcatg
       61 aagcgtttgg gggtaaaaga tttgtactac ccggacaatc gaatcaaggc actcggcgaa
      121 cgggacggct ttgaggttct gaatctcgct ccctcattgc tctcctatgc cgaacagaat
      181 ggcgtctacc ttcacggttt tggatccgat cttggctcag gccactggaa tgaaaaggga
      241 catgcgattg cggccgagat attgggccga agtttttgcg aaggtggctg gctcaaatag
      301 ctccacgctc ccgattctgt tatagatatt ctcgcttttc agtaaaaaat acggagtcag
      361 caatggaatt ccacgagaac gttctggggt tgatcggcaa tacgcctttg gtcagattga
      421 accgtttggc caaaggagtg aaagcgaaag tcttcgcgaa gatggagaac ctcaaccccg
      481 gttactcggt gaaagatcga atcggtattg caatgattga agcggccgaa cgggaaggtc
      541 ttttgaagcc cggcggtact gttgtagagg caacttcagg aaatacggga attgggttgg
      601 ctctggctgc gtcggtcaaa ggttataagt gtatttttgt gatgactgac aaagcgtccg
      661 ttgagaagtc cagatatcta aaagccctgg gcgctgacgt tgtaatcaca cctgtttctg
      721 caaagcccgg aacccccgat cactatgtat ccactgctcg tcggatcgcc tccgagactc
      781 caacctcgtt ttatccagat cagtattcga acccggcaaa tccggaagcg cactatagaa
      841 ccactggtcc agaggtgtgg cgacagacgg acggtaagat cactcacttt gttgccggtc
      901 tgggtacggg cggcacaatt tcaggcaccg gtcgcttttt gaaagaaaag aatccggcaa
      961 tcaggatcat cggtgctgat ccgctcggtt cgatcttcaa gacatttaaa gagaccggca
     1021 agctggttga agcgacgcct tacctcgtag aaggaatcgg gcaggagatc gtgcccccaa
     1081 acgttcacat caagtacgtt gatgaagtaa tcaacgttac cgaccgcgac tcctttgaga
     1141 tgtcgcgctt gcttggtcga atggaaggca tcttttgcgg tggttcaacc ggaacgaatc
     1201 tggcggcagc tcttagagtt gccgctgacc tcgatgaaaa tgcgatcgta gtgttcatcg
     1261 tttgtgatac tggcgagcat taccttacca agcatcactc tgacgagtgg ctcaaagaaa
     1321 agcgtttgct tgaaccgcag cggatcactg ccggactgat tactggaacc aagaaggccc
     1381 aggcgccgaa gtcactgatt tcagttagtc caacggacac cgttgctgtt gcgctggaaa
     1441 aaatggacga gcttggtctt actcaaatcc ctgtgctgga ggaagggaag gcggttggtg
     1501 cgttacgaga gagccgtgtg ctggcgaaag ttgttcgtga ccgagacctg ctttccacgc
     1561 cggtcagtga agttatggaa tcaagttttc ccacagttga cgtcgatgcg agttcaaacg
     1621 aagtcacaag acgtttgcag acaagcccgg cagtcttggt tgaagag
//
LOCUS       DATCGC010001298         1562 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_452885, whole genome shotgun sequence.
ACCESSION   DATCGC010001298 DATCGC010000000
VERSION     DATCGC010001298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1562)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1562)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1562
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_452885"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..876)
                     /locus_tag="VIJ87_12535"
     CDS             complement(<1..876)
                     /locus_tag="VIJ87_12535"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HEY5445267.1"
                     /translation="MSPSFPRVIPCVALLAALVASPVSSFAQIPAASSARAIPTEVEQ
                     SDGRVTQIIARAEDHFRKGKLNLEDSKREQARDEFDKAVDSILESGFDVRASQKLQTY
                     YLELVERIYREEVPLQNQAVPSNVAMTLIAQNTQDPKTPPPPPQIGFRDQKFEPSPLD
                     ELSKLVLTEQEKEVSSEDLLALEQAQKNVGFNFTLNPLIQQYINYYQGPRGRGTMENG
                     LRRSGQYMRLARQIFAKEGVPVDVTWLGQVESAWKVKAMSWASASGLWQFVPGTGRTY
                     DLKQTAYIDERNSFEQ"
     gene            1290..>1562
                     /locus_tag="VIJ87_12540"
     CDS             1290..>1562
                     /locus_tag="VIJ87_12540"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEY5445268.1"
                     /translation="MARTIVIGDIHGCYDELIELIEKIELTLEDRVIAVGDLTVKGPK
                     SREVLELFSRDPRFSSVIGNHDLALVNFWKHETPSLKTAQQRTFDEL"
BASE COUNT          403 a          379 c          382 g          398 t
ORIGIN      
        1 ctgttcaaaa ctgtttcgct catcaatata ggcagtttgc ttcaggtcat aagttcgacc
       61 agttccagga acgaactgcc aaagaccgga agctgacgcc cacgacattg ccttgacctt
      121 ccatgcactc tcaacttgtc ccagccaggt aacgtcaacc ggcacgcctt ccttggcgaa
      181 aatctgtcga gctagtctca tgtactgacc cgaacgtcgc agaccatttt ccatggttcc
      241 acgaccacgt ggtccctggt agtagttgat gtattgctga atgagcggat tgagcgtgaa
      301 gttgaaaccg acgttcttct gggcttgctc gagagctaac aggtcttcgc tcgaaacttc
      361 tttctcttgc tcggtcagaa caagcttgct cagttcgtcg agcggagatg gctcaaactt
      421 ctgatcacga aatccgattt gaggtggcgg tggtggtgtt tttggatctt gagtgttctg
      481 agctatcaac gtcattgcga cgttgctagg tacagcttgg ttttgaagtg gaacttcttc
      541 gcgatagata cgctcaacca gttcgagata gtaagtctga agtttctgac tcgcgcgtac
      601 atcaaatcca gattcgagaa tcgagtcgac tgctttgtca aactcgtctc gtgcctgctc
      661 acgtttgctg tcttcgagat tcagtttgcc tttgcggaaa tggtcttccg ccctggcaat
      721 aatctgagta acgcgaccgt cagattgctc tacttcggta ggtatagcac gggcggatga
      781 agccgccggg atctgtgcaa aactgctaac cggtgaagcg acaagagccg ctaataaagc
      841 cacacaggga atcacacgag ggaagctcgg agacatcaat tcgtcgtact ccttaatggt
      901 tggtgctagt catccagcta tgcagctaag ggaagtagca ttcacaaaca actagcgcgg
      961 taactcttgg cccatctgat ttgataacgc tatgactctc caatagatag ggagccaaaa
     1021 tcactttgga ggttaccaca cggttttttg aggtgtcaaa caaaccccaa ctatccaaca
     1081 gtctcaaaaa cagtaaactt ttccaccaaa gttggacgtc ttggtctttt aaagatgcgg
     1141 ccaaatttct tcgggttgcg cgcaatctgc cgattaatct tctttggcga aaaggcccaa
     1201 atggttaacg ccaatataag cggatccgtt gcaaaaatgt gaggctgggc gaatctcacc
     1261 cgcactttag cgaggtaatt acgatgaaaa tggcgagaac tatagttatt ggcgatatcc
     1321 acggatgcta cgacgagttg atcgagttga tagaaaagat cgaattgact ctcgaagacc
     1381 gggtcatcgc ggttggggac cttaccgtaa aaggcccaaa gagccgggaa gtactcgaat
     1441 tattcagccg agatccgcga ttttcatcag taatcgggaa ccacgacctt gcgttggtca
     1501 acttctggaa gcacgagacc ccaagtctca agactgctca acaacggact tttgacgaac
     1561 ta
//
LOCUS       DATCGC010001299         1749 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_284814, whole genome shotgun sequence.
ACCESSION   DATCGC010001299 DATCGC010000000
VERSION     DATCGC010001299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1749)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1749)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1749
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_284814"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(141..1337)
                     /locus_tag="VIJ87_12545"
     CDS             complement(141..1337)
                     /locus_tag="VIJ87_12545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445269.1"
                     /translation="MKITHFIVCILITVLISAASITAQEATKPDTAGAGPGALPEYVV
                     QVRRPDGCQVAPVSLKHKSGFVLYALPRPAKIQPDSSGQPITSKVFVAARQLGTQWEV
                     KVSIGKGEFYDAGDTMVGQFLLNLNELTSVKEVSRFGLSPIQVGVLRIIRQQAGDPGF
                     INSTQSVSLESIEANNLPDPYKLQLRNNSPNDLIAIQYNTFRQGQFLELKWLSHGLSD
                     PLIKAGESYTLAVSSEDKSCGDADGYHPNQSDRLDLVSAVFADGSFEGQSGLAALIKG
                     AAFGNRLRLERVVQALRNAGDDPTEIESQLKYLKDSINEETEPYMIETLRTILPPLPP
                     DATPVLEGFIRSGMHDVKVNLIRDVNRFESLKRAGNLRLTETWTPLTKAKYERWLAAS
                     EKMTSH"
     gene            1546..>1749
                     /locus_tag="VIJ87_12550"
     CDS             1546..>1749
                     /locus_tag="VIJ87_12550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445270.1"
                     /translation="MDAANSQCPKCEGLMERGFVFDQSLTSSRLLRWVEGEAEKGGAT
                     GLKLIGRKANEITRTDKCLKCGYL"
BASE COUNT          434 a          418 c          459 g          438 t
ORIGIN      
        1 gtgcaactga gggattgcaa ggggaagacg gtgttggagt gggccaagag tgattggata
       61 agaaagatgc tagcgagtgg gtttgctaat gagacccact aacgcagcgt taccctttag
      121 tgacgcggaa gagggtctca ctagtgagaa gtcatttttt ccgatgccgc tagccagcgc
      181 tcgtatttcg ctttggtcag cggggtccag gtctctgtta acctgagatt tcctgctcgc
      241 ttcaatgact caaacctatt aacgtctctg atcaggttta ctttcacatc gtgcattccc
      301 gaacgaataa aaccttccag cactggcgtc gcatcaggag gcaacggcgg caaaatagtc
      361 cgcaaagtct caatcatgta gggttcagtc tcctcattga tcgaatcctt caaatacttc
      421 aactgcgatt cgatctcagt cggatcgtcg cccgcgttac gaagagcttg aacaacacgt
      481 tcaagcctga ggcgattacc aaaggccgca cccttgatca atgcggcaag gccggattgc
      541 ccctcgaacg agccgtcggc gaaaacggca ctcactagat ctaagcgatc tgactgattc
      601 ggatgatagc cgtccgcgtc accacaactc ttgtcttcac tgcttactgc aagcgtgtaa
      661 ctctcaccag ccttaatcaa aggatcgcta aggccgtgac tcaaccactt caactccaaa
      721 aactgtcctt ggcgaaaggt gttgtactga attgcgatca ggtcgtttgg tgagttgttt
      781 ctgagttgta gtttataggg atccggtaag ttgttggctt cgatcgattc aagggagacg
      841 gattgcgtgg aattaataaa tcccgggtcg ccggcctgct gtcgaataat tctcaggaca
      901 ccaacctgaa tcgggctcaa tccgaagcga ctcacttcct ttacgctagt gagttcattc
      961 agattgagta gaaactggcc aaccatggtg tcgccagcgt cgtaaaactc gcctttcccg
     1021 atcgacacct tgacctccca ttgtgtgccc aactgtcttg ccgcgacaaa cactttggaa
     1081 gtgatgggct gtccggaact atcgggttgt attttcgccg gacgaggaag ggcgtacaaa
     1141 acaaaaccgc ttttgtgttt tagtgaaact ggagcgactt gacagccgtc aggacgtcgc
     1201 acctggacaa cgtattcagg caatgcgcca ggaccagcac cggctgtatc cggtttagtt
     1261 gcttcttgtg cggttatgct cgccgcactg atcagcacag tgatcaggat gcaaacgatg
     1321 aagtgggtga tcttcatatc gagtactcct tgttttcttt gtgagccagt caagaaggtt
     1381 ctactcccag cttcgcagtt aagcaagtta gtttcgcttc gttagctagc tgtccagatt
     1441 tgcgaaactc tggtgtctgc agaagaatcc gaaatagaat gcgttcgcta ccagggatac
     1501 ggaagatgag tcgaacgtgg ctttgctcaa agggaggttt catagatgga tgcagcaaat
     1561 agtcagtgtc cgaaatgtga aggtctgatg gagcgtggat ttgtcttcga tcagagtctg
     1621 acgagtagcc ggcttcttcg ctgggtcgag ggagaagctg aaaaaggtgg agccactgga
     1681 ctaaagctaa ttggccgaaa ggcaaacgaa ataaccagaa ccgacaaatg ccttaagtgc
     1741 gggtatctt
//
LOCUS       DATCGC010001300         1179 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_452911, whole genome shotgun sequence.
ACCESSION   DATCGC010001300 DATCGC010000000
VERSION     DATCGC010001300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1179)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1179)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1179
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_452911"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..211)
                     /locus_tag="VIJ87_12555"
     CDS             complement(<1..211)
                     /locus_tag="VIJ87_12555"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5445271.1"
                     /translation="MNENRAWVLIVDDDVSIRETLSDLLRSMGFNVQAFASAQEFLNY
                     RHRDVASCLILDVQLPDLSGLDLQLE"
     gene            complement(242..622)
                     /locus_tag="VIJ87_12560"
     CDS             complement(242..622)
                     /locus_tag="VIJ87_12560"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5445272.1"
                     /translation="MSPVPLISIVDDDDALRHSLDDLIRSLGFRTQGFFSAQAFLNST
                     EVFSTACLILDVRMPGVNGLDVQRNIIASQLRIPIIFITAHADGDTREQAMKAGAVAF
                     LYKPFREQDLVDAIALALKDSETS"
     gene            complement(994..>1179)
                     /locus_tag="VIJ87_12565"
     CDS             complement(994..>1179)
                     /locus_tag="VIJ87_12565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445273.1"
                     /translation="PRAPQSIDVRSRLSTLAKRGRIALNDLKRRLARMRSPEPRLPQL
                     HRNFIGARSVESILRAR"
BASE COUNT          323 a          307 c          270 g          279 t
ORIGIN      
        1 gttcaagctg aagatctaaa ccactcagat ccggcaactg gacgtcaaga atgaggcagc
       61 tggcaacatc ccgatgccgg taattcaaga actcctgtgc cgaggcaaat gcctgcacat
      121 taaaacccat cgatcgaaga agatcactca aagtctcgcg gatcgatacg tcatcatcaa
      181 ctatcaggac ccatgctcta ttctcattca tcgtaaatct ccatcccctc cgagcaagcc
      241 ttcatgacgt ctcagaatct ttaagagcca gcgctatggc atcgactaaa tcttgctcgc
      301 gaaacggttt gtacaagaac gcgactgcgc cagctttcat ggcctgttca cgtgtgtcgc
      361 cgtcagcatg cgccgtaatg aaaataatcg gaattcgcaa ttggcttgca atgatattgc
      421 gttgtacatc caatccgttc acacctggca tacgcacatc cagaatcaga catgccgtac
      481 tgaaaacctc tgtcgaattc aaaaaggcct gcgccgaaaa aaagccttgc gtacgaaatc
      541 caagcgatcg gatcaaatcg tcgagagaat gccttagggc gtcgtcgtca tcgacaatcg
      601 aaatgagcgg aaccggtgac ataatagttg agacaccgca ggtgcacggt ctaatcgcag
      661 ggtgcgactc aaatgccgat aactcgcacc ctctgaaaac tatcttctgt tagagattat
      721 ctagcggatt actggcggta atttctatta tcttttagta aagaattttc tactttggta
      781 taaaacttca ctttgaacac gtatgcattt cataagagct tccacccaac ccacatacca
      841 gcaatgaaca ggtgtatagg tatcgtcgct tgcgcgcgca acgacgtaaa agagtatctc
      901 ttgagaaaat tcacttgccg acagatcggc aatgagccga aatttcattt atcgttcgac
      961 ggcggacgga atctactttc gtggcgacaa gctttaccga gcacgcaaaa tagactcgac
     1021 gctacgcgct ccgatgaagt ttcgatgaag ttgtggcagt ctcggttccg gcgagcgcat
     1081 ccgtgccaag cgccgcttca gatcgttaag ggcaatgcgt cctcgtttgg ccagcgtcga
     1141 caaccggctt cgtacgtcga ttgattgggg cgcacgagg
//
LOCUS       DATCGC010001301         1122 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_186022, whole genome shotgun sequence.
ACCESSION   DATCGC010001301 DATCGC010000000
VERSION     DATCGC010001301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1122
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186022"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..933)
                     /locus_tag="VIJ87_12570"
     CDS             complement(<1..933)
                     /locus_tag="VIJ87_12570"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEY5445274.1"
                     /translation="MNQESAATFIEFEPRQLLAQAWRWALSRWAEVLCGALLTIMSIQ
                     LFAVIARKNITNDEIVHIPAGYYHLVAGEFQFNNEHPPLVKMWAALPLLFIQPKESVK
                     TSNDPASDYRAVTWGFHQNFWADNKEQFVTITFWTRAMMIVLTCILGVVIFCFARDLF
                     GRRVAVLAVALFVLEPTVLAHGRIVHTDLPALLVYLLFFFVLRRYLQARTTKRALLLG
                     LVSGIALMTKFSMIVLLPVLMALAVVGVVFAGRLGDKRKRIVLHAALVFLVVWLVVNA
                     AYRFQSPEISPGDVQWVQTQSRESAGSWMKFFQIG"
     gene            933..>1122
                     /locus_tag="VIJ87_12575"
     CDS             933..>1122
                     /locus_tag="VIJ87_12575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445275.1"
                     /translation="MTLPNVPRVKLKTDNVAAFAVTIGPIFYFLPALLNHLKLGPYDG
                     MLFNVPLRVATAQIIWSGH"
BASE COUNT          308 a          313 c          264 g          237 t
ORIGIN      
        1 accgatctgg aaaaacttca tccagctgcc ggcactctct cgtgattgtg tttgcaccca
       61 ctgcacatcg ccaggtgaga tctccggact ttgaaaacga taagctgcat tcacaaccaa
      121 ccacacaacc agaaaaacaa gagcggcatg cagaacgatg cgcttgcgtt tgtcacccag
      181 tcgtccagcg aaaacaacac caacaactgc aagcgccatc agcactggca acaatacaat
      241 catcgagaac tttgtcatca aagcgatacc gctgactaag ccaagcaaaa gcgcgcgctt
      301 agttgtccgc gcctgaaggt atctcctcaa gacaaagaag aagagtagat aaactaacaa
      361 cgccggcaga tctgtgtgaa caatgcgtcc gtgcgccagg acagtcggtt ctaaaacgaa
      421 aagcgcaacc gcaagcaccg ccacgcgcct gccaaaaagg tcgcgtgcga aacaaaagat
      481 cacgacgccg agaatgcacg tcaacacgat catcattgcg cgcgtccaga acgtgatcgt
      541 cacaaactgt tctttgttat cggcccagaa gttttggtga aagccccagg taacggcgcg
      601 gtagtcacta gccggatcgt tgctcgtttt cacagactct ttgggttgga taaagaggag
      661 tgggagagcg gcccacatct taaccagtgg agggtgttcg ttgttgaatt ggaactcgcc
      721 agcaaccaga tggtagtatc ctgccggaat atgaacaatc tcgtcgttgg tgatgttctt
      781 gcgcgctatc actgcaaaga gctgaatact catgatcgtg agcaacgctc cgcaaagcac
      841 ttcagcccaa cgcgacaagg cccaccgcca cgcttgcgcc aataattgtc gcggctcaaa
      901 ctcaataaaa gttgccgctg actcttgatt caatgactct tccaaatgtc cctcgcgtaa
      961 agttaaagac tgacaacgtc gcagcgttcg cggttacgat tggcccaatc ttctacttcc
     1021 tgccggcgct cttaaatcat ctgaaactcg gtccgtatga cggaatgctt ttcaacgttc
     1081 cgctgcgcgt ggcgaccgct caaattattt ggtccggaca ct
//
LOCUS       DATCGC010001302         1492 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_151041, whole genome shotgun sequence.
ACCESSION   DATCGC010001302 DATCGC010000000
VERSION     DATCGC010001302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1492)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1492)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1492
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151041"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            33..>1492
                     /locus_tag="VIJ87_12580"
     CDS             33..>1492
                     /locus_tag="VIJ87_12580"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEY5445276.1"
                     /translation="MPNTDLLYGHGSFVAGVIGGSGSASNGKYSGVASGANFVGLSAG
                     DLTLLFVLEGLDYLLANGNGLNVRVVNCSFSANTVFDVNDPVNVATKLLTDNGVNVVF
                     SAGNSGPGQHTLNPYAVAPWVVSVGATDTQGRLANFSSRGDFASALFRPTVVAPGVNV
                     VSLRGSGVTNVTGAEGIANGDLKRLSLSELPYYTTASGTSFSAPQVSGTIALMLEANP
                     NLTPANVRDILQRSATPLPPYYEHEVGAGMLNAHAAVLQAAYPERKIGTWRATLDRGQ
                     VSFANDPLKTFGGTVQPNGYYETTVQVPADTVFASVQIGWGPLSSVNDLGLSVYDSSG
                     NLRGQSNAINLPGLTGKTERVVLSLPAAESWRIRVRNTLPIGTSQPFSGVVQFNRVNY
                     GRLSDAGSMSTNLRTDVNQNLRCFSMWPIGNRFRADNAVIRADFAAALVLGARVPQYL
                     PGSPTYQDVRDALTMSYVESAQASPTGALFTDVNAGG"
BASE COUNT          329 a          362 c          427 g          374 t
ORIGIN      
        1 cagggtttag ttatccgata gacctcccca gtttgcccaa taccgatttg ctttacggcc
       61 acggtagttt tgttgccgga gtaatcgggg gtagcggcag tgcttcgaac gggaaataca
      121 gtggagtcgc atcaggcgct aacttcgtgg gcctgagtgc aggcgatcta actctgctgt
      181 ttgtgctgga aggtcttgat tatctgttgg ctaatggcaa tggattgaac gtccgcgtcg
      241 tgaattgcag tttctcggca aacacagtgt tcgacgtaaa cgacccggtc aatgtggcga
      301 cgaagctttt gaccgacaac ggtgtcaacg tggtcttttc ggcagggaat tcaggaccag
      361 gccaacatac cttgaacccc tacgctgttg cgccgtgggt agtgagtgta ggcgcgactg
      421 atacccaggg gcgcctggcc aacttctcgt cacgaggcga tttcgcgagc gctttgttta
      481 gaccgacagt tgtcgctccc ggtgtgaatg tcgtgagctt gcgtggttcc ggtgtaacga
      541 atgtgacggg cgctgaggga attgcaaatg gcgatttaaa gcggttgagt ttgagcgagt
      601 tgccctatta cacaaccgca agcgggacta gtttctctgc tccccaggta agcggaacaa
      661 tcgctttgat gttggaagca aacccaaatc tcactcctgc gaatgtacgc gacattcttc
      721 agcgaagtgc gacaccgctg ccgccttact acgaacatga agtcggagcc ggcatgctaa
      781 acgcgcacgc ggcagtactt caggcagcgt atccggagcg aaagattggg acttggcgcg
      841 cgacgttgga tagaggtcag gtgagttttg ctaatgatcc actcaagact tttggcggga
      901 ccgtccagcc taacggttat tacgaaacaa ctgtacaagt ccccgctgat acggtctttg
      961 cttcagtgca aatcggctgg ggaccattgt cgagtgtcaa tgacctggga ttatctgttt
     1021 acgattcgtc tggaaatctc cgcgggcaat caaatgcgat aaacctaccc gggcttacag
     1081 ggaaaaccga acgagttgtt ttgagtttgc ctgccgccga aagctggcga attagagttc
     1141 gcaacacgtt accgattggt acttcacaac ctttttctgg tgtagttcag ttcaatcgtg
     1201 tcaattatgg tcgactcagc gatgccggtt cgatgagcac caatttgcga acggacgtga
     1261 atcaaaacct gcgttgtttt tcgatgtggc ccatcggcaa caggttccga gcggataacg
     1321 cggtcattcg agcggatttt gctgccgcac tggttttggg agctcgagtg ccccagtact
     1381 tacctggcag tcctacctat caggatgttc gcgacgcgct aacgatgtcg tatgtggaga
     1441 gcgctcaggc atcacctaca ggagctttgt tcactgatgt gaatgctgga gg
//
LOCUS       DATCGC010001303         1084 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_186132, whole genome shotgun sequence.
ACCESSION   DATCGC010001303 DATCGC010000000
VERSION     DATCGC010001303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1084
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186132"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..157
                     /locus_tag="VIJ87_12585"
     CDS             <1..157
                     /locus_tag="VIJ87_12585"
                     /inference="COORDINATES: protein motif:HMM:NF013658.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoadenosine phosphosulfate reductase family
                     protein"
                     /protein_id="HEY5445277.1"
                     /translation="LKEHDVPCNELYDRGYRSIGCQPCTTLVQIGEGERAGRWRGTAK
                     TECGLHQ"
     gene            195..>1084
                     /gene="sat"
                     /locus_tag="VIJ87_12590"
     CDS             195..>1084
                     /gene="sat"
                     /locus_tag="VIJ87_12590"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: protein motif:HMM:NF003166.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004781 - sulfate adenylyltransferase
                     (ATP) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HEY5445278.1"
                     /translation="MKLIKPHGGTLIHREIQGSEREELVRKATTLPKVQLSSRQVSDL
                     LMLAIGGYSPLDGFLNEADYTSVLDRMKLVDGVVWPIPITLAVSTDEADGLRVSSEVS
                     LYHDDDLLGILHVTEKFTYDKEREAQGVYGTTERAHPGVAALMAQGDWLLAGPISLLN
                     RPRNHSFQQYRLDPSETRSVFSKRGWRRVVAFQTRNPVHRAHEYIQKCALEIADGLLL
                     HPLVGDTKLDDVPADVRMRSYEEILAKYYPAARTVLSVMPAAMRYAGPREAVFHALIR
                     KNYGCSHFIVGRDHAGVGNY"
BASE COUNT          260 a          281 c          285 g          258 t
ORIGIN      
        1 tctcaaggag cacgatgttc cctgcaacga gctttatgac cggggctatc gctccatcgg
       61 ttgtcaacca tgtacgacac ttgtccaaat cggtgaagga gaacgagccg ggcgttggcg
      121 cggcaccgca aagacagaat gtggactgca tcagtagtta agttttaatt caactcagag
      181 gaacgaaacc ttagatgaaa ttgataaagc cccacggagg caccctaatc catcgcgaaa
      241 tccagggtag tgaacgcgaa gaacttgtaa ggaaggcgac cacgttgcca aaggtccaac
      301 tcagtagccg ccaggtttca gatctactga tgctggcgat tggtggctac tccccgcttg
      361 acggctttct caatgaggct gactacacat ctgttctcga tcgcatgaag ttagtagatg
      421 gagttgtctg gcccattcct atcaccctgg ccgtaagcac agatgaagca gacggtctga
      481 gagtctcttc ggaagtatct ctgtaccacg acgatgatct tctgggcatt cttcacgtaa
      541 ccgaaaagtt tacgtacgac aaagaacgcg aagcacaagg tgtctacgga acgacagagc
      601 gtgcgcatcc tggtgtggcc gcgctgatgg cgcaaggtga ttggttattg gcggggccga
      661 ttagtttgct gaatcgtcca cggaatcact cgtttcagca gtatcgctta gacccttcgg
      721 agacgcgttc cgtgttcagc aaacgtggct ggcgccgcgt cgttgcgttt caaacgcgca
      781 accccgtaca tcgcgcacat gaatacattc agaaatgcgc actcgagatt gccgatggtc
      841 ttctgcttca tcctctcgtc ggcgacacca aattggacga tgtgcctgct gatgtcagaa
      901 tgcgttctta cgaagagatt ctcgcgaagt actaccccgc tgcacgaact gttttgtccg
      961 taatgccagc agcgatgcgt tatgcaggac cacgcgaagc tgtttttcat gcattgatcc
     1021 gtaagaacta cggctgctct catttcattg tcggtcgcga tcacgccggt gttggcaact
     1081 acta
//
LOCUS       DATCGC010001304         1377 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_416687, whole genome shotgun sequence.
ACCESSION   DATCGC010001304 DATCGC010000000
VERSION     DATCGC010001304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1377)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1377)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1377
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_416687"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..286
                     /locus_tag="VIJ87_12595"
     CDS             <1..286
                     /locus_tag="VIJ87_12595"
                     /inference="COORDINATES: protein motif:HMM:NF014614.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HEY5445279.1"
                     /translation="RETWSLCVEKLRSGDYDMLVFDELVYVLSYKMLPVEEVVDELKT
                     IRAEQPALHVVVTGRDAPPELIAAADLVTEMTEIKHPFTAGIKAQQGIEF"
     gene            389..1297
                     /gene="accD"
                     /locus_tag="VIJ87_12600"
     CDS             389..1297
                     /gene="accD"
                     /locus_tag="VIJ87_12600"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HEY5445280.1"
                     /translation="MAWFNKKSKRIEAVPPDQRVVKTENVFVKCDGCEAHLYKGELED
                     GLQVCKHCSYHFRIGARERLALLFDDGKFEELDSEVISIDPLEFSDSKPYHSRLKQAK
                     ESSGLPEAIINARGTVGDHPVCAGAMDMLFIGGSMGSAVGEKVTRLIERAMKERSAVV
                     IFSASGGARMQEGTLSLMQMAKISASLAALDEARLPFISVLTDPTTGGVTASFAMLGD
                     VIIAEPKALIGFAGPRVIEQTIRQKLPKDFQRSEFLLEHGMIDDIVDRREIKSHITRV
                     LNFMMNPEIHGESDIERARRRAISRG"
BASE COUNT          337 a          364 c          365 g          311 t
ORIGIN      
        1 acgagagacg tggagcttgt gcgttgagaa acttcggtcc ggagactacg acatgctggt
       61 cttcgacgag ctggtttacg ttttgagtta caagatgctt cctgtcgagg aggttgtgga
      121 cgaattaaag actattcgcg cagagcagcc ggccctacat gttgtcgtta ctggacgtga
      181 cgcgccgcct gaattgatag cggctgccga tctggtcacc gaaatgaccg aaatcaaaca
      241 cccgtttacg gcgggcatca aggctcaaca agggattgag ttctaattgg gtataacccg
      301 caaatacggc tctgctcagc aggtaatccg aaatctgcga ttcgaaattc ggaattcccg
      361 agtcgtgtgc taaccttaaa tcaaccccat ggcctggttc aataaaaagt ctaagcgtat
      421 agaggccgtt cctcccgatc agcgcgtcgt gaagaccgaa aacgtcttcg tgaagtgcga
      481 tggttgtgag gctcacctgt acaagggcga actcgaagac ggactacagg tttgcaagca
      541 ttgcagctac catttccgta tcggcgcccg tgaacgactc gctctcctct tcgacgacgg
      601 taaattcgaa gaactcgata gcgaagtgat ctcaattgat ccactcgaat tctcggacag
      661 taagccctac cattcccggc tcaaacaagc aaaagaatcc tctgggcttc cggaagcgat
      721 aatcaacgca cgtggtaccg ttggagatca tcccgtctgc gccggtgcga tggatatgct
      781 cttcataggc ggctcaatgg gttcagcagt cggcgaaaag gtaactcgtc taatcgagcg
      841 cgcaatgaaa gagcgcagcg cagtggttat cttctcagcg tccggcggag cgcgaatgca
      901 ggaaggcacg ctttcgctga tgcagatggc caagatttcc gcctctctcg ccgcccttga
      961 tgaagcacgt cttcccttca tttctgtgtt gaccgatccg accactggcg gagtaacggc
     1021 gagtttcgca atgctcggtg acgtcatcat tgctgagccg aaagctctga tcggcttcgc
     1081 cggtccacgc gtcatcgaac aaacgattcg gcaaaagctt cccaaggact ttcaaagatc
     1141 tgagttccta ctggagcacg gcatgatcga cgatatcgtt gaccgtcgtg aaatcaagtc
     1201 gcacatcacc agggtattga acttcatgat gaaccccgag attcacgggg aatcagatat
     1261 cgaacgagcc cgccggcgag ctatctcgcg aggctagtcc cctggtcgca aatctcgcat
     1321 gaagactgat gcggcagatg gatttcgctg aagcagtaaa ctacctcctt agccttg
//
LOCUS       DATCGC010001305         1182 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_53112, whole genome shotgun sequence.
ACCESSION   DATCGC010001305 DATCGC010000000
VERSION     DATCGC010001305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1182)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1182)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1182
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53112"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(90..>1182)
                     /locus_tag="VIJ87_12605"
     CDS             complement(90..>1182)
                     /locus_tag="VIJ87_12605"
                     /inference="COORDINATES: protein motif:HMM:NF025598.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4340 domain-containing protein"
                     /protein_id="HEY5445281.1"
                     /translation="LFSQEGSKDQKVEIADSIKVFGQDDKGQMLQIGSVPEKEKDQVY
                     VRFAPRGAVYTLPKKIEEALNTKPADLRDYHLVRIDTNVLDRITIDVSGKGKTVLARK
                     DGNWTIASRNNAPADSRAVRRLIDTLQNARVTRFVEDVASNLPKYSLDKPRLQITFSS
                     FASENTAETKAGEEPFATLSFGKEDGDNVYARLTDEPFVVTARRGLLDQIPADPLQWE
                     ELSIFKLKPDQIHHLSLTTDKELSLERGDNNQWHWLKGTGQIDENNVQSLLNTLSSLH
                     AARWLGATKPQDGLEKPQLTLAFTTSSDDKTSHRLIIGAPANDGTWYAHVDGREGTFA
                     ISNSDLNSLRLPLVAQPSPTPSPAPSVTP"
BASE COUNT          246 a          319 c          306 g          311 t
ORIGIN      
        1 ttcgccacgc aacacttcaa ccgttgagtt atggcatcgc gacgatttac accgcgcaga
       61 gtgtctgata ggacaagctg tttaacggat cacggcgtaa cgcttggcgc cggacttggc
      121 gttggtgatg gttgcgccac aagaggcaac ctcaggctat tcagatccga attgctaatc
      181 gcaaacgtac cttcgcggcc gtctacatgc gcgtaccacg ttccgtcgtt agccggagcg
      241 ccgatgatca accgatgtga cgtcttgtcg tcggacgaag ttgtgaatgc aagagtgagt
      301 tgtggctttt ccaaaccatc ttgaggcttc gttgctccaa gccagcgcgc tgcatgcaag
      361 ctcgacaacg tgttgagtag cgattgcaca ttgttttcat cgatctgacc ggtgcctttt
      421 agccagtgcc actggttatt gtcgccgcgt tccagcgaca gctccttgtc tgtcgttagg
      481 ctcaggtgat gaatttggtc gggtttaagc ttaaagatcg ataactcctc ccactgcaaa
      541 ggatcggctg ggatctgatc cagcagaccg cgacgggctg tcacgacaaa tggttcatct
      601 gtaagtcgcg cgtagacatt gtctccgtct tcttttccaa aggagagtgt agcgaatggt
      661 tcctcacccg ccttggtctc ggcagtgttc tccgacgcaa acgaactgaa cgttatttga
      721 agacggggtt tgtccaggct gtattttggc agattcgaag cgacatcttc cacgaacctg
      781 gtcacccgcg cgttttgcaa tgtatcaatc aaccgccgga ccgcgcgtga atccgcgggc
      841 gcgttgtttc ggctggcgat ggtccagttt ccatctttgc gcgcaagcac ggtcttacct
      901 ttgcccgaaa catcgattgt aatccggtcg aggacgtttg tgtcgatccg aaccaagtga
      961 tagtcacgca gatcagctgg cttagtattc agggcctctt caatcttctt gggcaatgtg
     1021 tagacagccc cacgaggagc aaatcggaca taaacctggt ccttttcctt ctcagggaca
     1081 ctgccgattt gcagcatttg gcctttgtcg tcctggccaa acactttaat cgagtccgca
     1141 atctcgacct tttggtcctt acttccttcc tggctaaaca ac
//
LOCUS       DATCGC010001306         1178 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_251571, whole genome shotgun sequence.
ACCESSION   DATCGC010001306 DATCGC010000000
VERSION     DATCGC010001306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1178)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1178)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1178
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251571"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..950)
                     /locus_tag="VIJ87_12610"
     CDS             complement(<1..950)
                     /locus_tag="VIJ87_12610"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5445282.1"
                     /translation="METLINDLRYAMRMVTRSKGLTIVAVLSLAVGIGANTAIFSIVN
                     SVLFRPRPVAAPEQLVELYTGHKEHPYEATSYPSYLDFRERNEVFSGLAAYSIMQLKL
                     TGNDQVEKVWAETVSGNYFQVLGVQPVLGRPFVDDDDRTPGTSPVIVVSHSFWQRRFN
                     SDPQVIGKTITLNNQALTIIGVAPRQYTGMLRGLAIDVWVPTMMRPALEGENFDRLTS
                     RGNRNFFLVGRLKPNTTIDQARARFDRLTLEMREAHPEEWRPKREESGTIREHFVTIL
                     PESQTRIPPDAYTAAYALIGLLMVVVDLIMLIAGINLASLL"
BASE COUNT          274 a          311 c          316 g          277 t
ORIGIN      
        1 agcaaactcg ctagattgat tcccgcaatc agcattatga gatcgaccac caccatgagt
       61 aggccaatca aggcataagc tgcggtgtac gcatcgggag gaatacgcgt ttggctttcg
      121 gggagaattg tgacgaagtg ttcgcgaatc gtgcctgact cttctcgctt cggcctccac
      181 tcctcggggt gcgcctctcg catttccagc gtcaaccgat caaagcgggc acgagcttga
      241 tcaatggtcg tatttggttt taaccgaccg acaagaaaga agttgcggtt gccacgactt
      301 gtcagacgat cgaaattctc gccctccagt gcgggtctca tcatggttgg cacccaaacg
      361 tcgatggcca acccacgcaa catcccggtg tactgtcggg gcgccacgcc aataatggtg
      421 agcgcctgat tattcaaagt gatcgttttg ccaatcactt gaggatcgga attgaatcga
      481 cgttgccaaa aggaatgact aacgacgatc actggacttg ttccaggcgt tcgatcgtcg
      541 tcgtccacga aggggcggcc gagcaccggt tgaactccca gaacctggaa gtaattgccg
      601 gacacagttt cagcccacac cttctcaact tgatcattgc cggtgagctt cagctgcatg
      661 atgctgtagg cggccagacc agagaagact tcattacgtt cgcggaagtc gaggtaacta
      721 gggtaagagg ttgcttcgta aggatgctct ttgtgacccg tgtaaagttc tacgagttgt
      781 tcgggtgcgg caaccggccg cgggcgaaat aagacagaat taacgatgct gaagatcgcc
      841 gtatttgctc cgatacctac agccaacgag agcacggcga cgatggtcag gcccttgctc
      901 ctcgttacca ttcgcatcgc atagcgaaga tcgttaatga gagtttccat ggtgatgatc
      961 agtgttcgat atgctttaga gcttcttttt gcaaaagtcg ggtttttacc ccggaggggt
     1021 cacatgttta tagccacaac aatgtcccac ctccggcgcc attcggaggg gcggaatgaa
     1081 cgaccgcttt gaattcgcac tttcgctccg cccctccgaa tggcgcttaa ggggcacgcg
     1141 ggcctctgat ctataaacat tgcactcctc cggagtga
//
LOCUS       DATCGC010001307         1021 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_416777, whole genome shotgun sequence.
ACCESSION   DATCGC010001307 DATCGC010000000
VERSION     DATCGC010001307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1021
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_416777"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..594)
                     /locus_tag="VIJ87_12615"
     rRNA            complement(<1..594)
                     /locus_tag="VIJ87_12615"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            complement(924..>1021)
                     /locus_tag="VIJ87_12620"
     rRNA            complement(924..>1021)
                     /locus_tag="VIJ87_12620"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          192 a          330 c          243 g          256 t
ORIGIN      
        1 acactcaggg cgaaccccaa ggtctcctcc taccgcttgt aggcatgtgg tttcaggctc
       61 tctttcactc cccgcactgg ggtgcttttc acctgtccct cacggtactc gtccactatc
      121 ggtcacacgg gagtctttag ccttggaggg tggtcccccc agcttcacgc ccggactctc
      181 gtaccgggcg ttactcagga actccacctc ctgaaattca ttgccttcgt ctaccgggct
      241 ctcaccgtct ttggcgcccc gttccaaggg acttcgactg gcgtcttttc aggatcctgt
      301 gggtcctaca accccgcggc cacaaggacc acggtttagg ctgtacccct ttcgctcgcc
      361 gctactcagg gcatctcaat tgatttctct tcctcggggt acttagatgt ttcagttccc
      421 ccggttcgct ccgttcgaaa acggtgatgg gactcgcgtc ccaacgggtt gccccattcg
      481 gccatctcgg gatcattgcg tgtgtgccgc tcccccaagc ttatcgcagc ttaccacggc
      541 cttcatcgcc tccgtgtgcc caggcatccc ccacatgcct tcactcgctt gactacaaca
      601 atctgtgttc aagcagagct cctacgatct aacaacttca caactttgtt cgagtgacaa
      661 tctgctccat ccaacggagc atgttgcaac gttaccgttg cgacgtgctg tcggacgaaa
      721 tcgaagtctc tcaacaagga ttctcaaatc cgcgatctac cactacttcc gttgtcaaat
      781 agcgatgacg ctcgcggctt cacagccaag gcgtcaatgc aagaaatcga attcgggaat
      841 ttggatgtgt cgagacgagc gacttacgaa ggttttcgat cggaagcgcg ctccgaggag
      901 cggccgatct actcacgatc cgttaaggag gtgatccagc cgcaggttcc cctacggcta
      961 ccttgttacg acttcgcccc agtcactgaa ttgacctttg gcggctgcct ccttgcggtt
     1021 a
//
LOCUS       DATCGC010001308         1347 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_351391, whole genome shotgun sequence.
ACCESSION   DATCGC010001308 DATCGC010000000
VERSION     DATCGC010001308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1347)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1347)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1347
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_351391"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..265
                     /locus_tag="VIJ87_12625"
     CDS             <1..265
                     /locus_tag="VIJ87_12625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445283.1"
                     /translation="NLTMVGAPSEPLAVPAFSLIVRRRSFSGSAIGGIAETQEMLDFC
                     GANNITADVEVIPIQKVNEAYERLLKSDVKYRFSIDMASLKSE"
     gene            314..1309
                     /locus_tag="VIJ87_12630"
     CDS             314..1309
                     /locus_tag="VIJ87_12630"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEY5445284.1"
                     /translation="MKKRKLGKSNLEVSAMGLGCMGMTFAYGPPGNKEEMIALIRSAV
                     ERGVTFFDTAEVYGPYTNEELVGEALAPFRKQVVIATKFGFKPASKVESRWSDLDSRP
                     ERIKQVAEASLKRLRTDVIDLLYQHRVDPKVPIEDVAGAVKELIGEGKVKHFGLSEAG
                     VQTIRRAHAVQPVTAVQSEYSLWFRDPEKELLPVLEELSIGFVPYSPLGRGFLTGKMD
                     ENTTFDSSDFRNTLPRFTPEARKANQALVDLLGEIAKRKKATPAQIALAWLLAQKPWI
                     VPIPGTTKQKRLEENIGAAEVELTPDDLREIESVSSKIKVEGARYPEKLEQMTGR"
BASE COUNT          338 a          328 c          381 g          300 t
ORIGIN      
        1 caatcttacg atggtcggcg ctccctccga gcctctcgcg gtgccggcat tcagcctcat
       61 cgtgcggcgt cgcagtttct ccggctctgc gattgggggc atcgctgaaa cgcaggagat
      121 gctcgacttt tgcggcgcca ataacatcac cgccgatgtc gaagtgattc ctattcaaaa
      181 ggtcaacgaa gcctacgagc gattgctcaa gtccgatgtg aagtaccgtt tctccataga
      241 catggcttca ctcaagtcgg agtgatccaa atagttgata gttgagagct gattcgcttt
      301 tggagttcag aaaatgaaaa aacgcaaact tggaaaaagt aatctggaag tctcggccat
      361 gggactcggc tgtatgggga tgacctttgc gtacggtccg cctggcaaca aagaggagat
      421 gatcgcattg attcggtcgg ctgttgaacg cggcgtcacg ttttttgata ccgccgaagt
      481 ttatggtccg tacacgaatg aagaactcgt tggcgaagcg ctcgctccgt ttcgcaagca
      541 ggtggtgata gccaccaagt ttggtttcaa acccgcttcc aaagtcgaat caaggtggag
      601 cgatttggat agtcgccccg aacgcattaa acaagtcgct gaagcctcgc tcaagcgact
      661 ccggaccgat gtgatcgatc tgttgtatca acaccgtgtt gatcccaaag tgccaatcga
      721 agatgtggcg ggagcggtga aggagctcat tggggaggga aaggtgaagc atttcggtct
      781 ttctgaggca ggagtgcaaa cgatccgtcg cgcacacgcg gtgcagcccg tcactgcagt
      841 tcagagcgaa tattcgttgt ggttccgaga tcctgagaag gaactgctgc cggtgctcga
      901 agaactctcg atcggttttg tcccgtacag tccgcttgga agaggctttc tcactggaaa
      961 aatggacgag aacacgacgt tcgacagttc ggactttcgc aacacgctcc ctcgttttac
     1021 gccagaggct cggaaagcga atcaggcttt ggtcgatctg cttggcgaga tcgcaaaacg
     1081 caagaaggcc acaccggctc agatcgcgct tgcctggttg cttgcgcaga aaccgtggat
     1141 agttccaatt cccggaacta cgaaacaaaa gcggctggaa gagaatatcg gagcagcaga
     1201 agtcgaactt acgccagacg atcttcgcga gatcgaaagt gtttcctcaa agatcaaggt
     1261 agaaggggct cgatatcccg agaagctgga acaaatgaca ggccggtgag gtcagaagta
     1321 aaaaacgtct aagtcggtca atcttgt
//
LOCUS       DATCGC010001309         1066 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_251640, whole genome shotgun sequence.
ACCESSION   DATCGC010001309 DATCGC010000000
VERSION     DATCGC010001309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1066)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1066)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1066
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251640"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..219)
                     /locus_tag="VIJ87_12635"
     CDS             complement(<1..219)
                     /locus_tag="VIJ87_12635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445285.1"
                     /translation="MQTHEGHARRRLRLTITGIIFFLTTAALSSTSSTSKSATPASAT
                     YVIDNQKGKFIAHAFAGGLFWFKGHDHYL"
     gene            389..>1066
                     /locus_tag="VIJ87_12640"
     CDS             389..>1066
                     /locus_tag="VIJ87_12640"
                     /inference="COORDINATES: protein motif:HMM:NF045432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445286.1"
                     /translation="MQKSENLSEKARVKVTRPKGGTVVTVSEFLSLSRPKGDLILRIG
                     REEVSVTSLDRIYWPDEKLTKFDLLSFYLKVADFIMPFLKDRPAILQRYPRGINAPMF
                     FQQDLESAPAFIKTARLINQEGRELDYAVYSTTASLLHFVNLGTIEQHQWHSTVKHLD
                     KPDWIAIDLDPKKAPWENVLQVALVVKEVTDEIGLQAFPKTSGSSGIHIYVPLKPTNG
                     YEQVAEFA"
BASE COUNT          277 a          236 c          281 g          272 t
ORIGIN      
        1 aaggtagtga tcgtggccct taaaccaaaa gagtccgccg gcaaatgcgt gggcaataaa
       61 cttgcccttt tgattgtcga taacataagt tgcgcttgcg ggagttgctg atttgcttgt
      121 agagctggtg ctggagagtg ctgcagtagt caggaagaaa atgattccag tgattgttaa
      181 gcgcagtctt cgccgagcgt gaccttcgtg ggtttgcatt agctgatcct ccggaaacaa
      241 agtgggattc aatggggata taaagggttg gcttgatcga actgtaatta gagtctgtgg
      301 cagcagcgtt ataaagttgt ccgattagtt ttacgacgga ccaataagct tgcgcgtttg
      361 attggttgca aaagatactg tgagacagat gcagaaaagc gaaaatctga gcgagaaggc
      421 tcgagttaaa gtaacccgac caaaaggtgg aacagtcgta accgtttcgg agtttttgtc
      481 actatcgcga ccgaagggtg acctcatctt gcggattggt cgtgaagaag tcagtgtcac
      541 gagtctcgat agaatctatt ggccagatga aaagctgacg aagtttgact tgctttcgtt
      601 ctacttgaaa gtggctgact tcatcatgcc tttcctaaag gataggccgg cgatcctcca
      661 gcgatacccg cgcggaatta acgcgccgat gttctttcaa caggatcttg agagtgctcc
      721 cgctttcatc aaaactgcga ggctaatcaa ccaggaagga cgcgagctcg actacgctgt
      781 ttactcaacc accgcctcgc tactccattt cgtcaacctc ggtacgattg aacaacacca
      841 gtggcattcg actgtgaagc atctcgataa accggattgg attgccatcg atctggatcc
      901 caaaaaagct ccctgggaaa atgttcttca ggtcgctttg gtcgttaaag aagtcaccga
      961 cgagattgga ctccaggcat ttcccaagac ttcaggctct tctggtattc acatctacgt
     1021 gcctttgaaa ccgacgaatg gatacgagca ggtagcggag tttgcg
//
LOCUS       DATCGC010001310         1429 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_53200, whole genome shotgun sequence.
ACCESSION   DATCGC010001310 DATCGC010000000
VERSION     DATCGC010001310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1429)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1429)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1429
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53200"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1213
                     /gene="uvrC"
                     /locus_tag="VIJ87_12645"
     CDS             <1..1213
                     /gene="uvrC"
                     /locus_tag="VIJ87_12645"
                     /inference="COORDINATES: protein motif:HMM:TIGR00194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HEY5445287.1"
                     /translation="LAAKYRDLRKTVNRLSDQQKMATTSESDIDIFGYYREGQRLALQ
                     LFTMREGHIVGRREFFWEDLSHDAFDPSDFLSEVLAQYYASDYVPREIYVPGDFTDRD
                     LLEKALTLRRGRRVKIMNPQRGEKRDMIDLVEKNAKLAFEQRFRILKPDMKLVLEELQ
                     ETLELPHFPSRIESFDISHIQGAENVAGMVVCDNGKMNRSEYRKFKIRSVEGANDVAS
                     MREVVTRRYRRLLDEGKTLPSLIMIDGGKAQLNGAAESMSELGLEAIPMVGIVKPPQR
                     HNDVAYLLMKGREDEPIYLDSHSLILRLLQMIRDETHRYAVTYHRKRRELRDFTCELT
                     AIPGVGDKRKGRLLRHFGSIQRIARASVSELTPFVGRKTAEEIADHFERQKALADSGE
                     NNLRSQISNPP"
     gene            complement(1248..>1429)
                     /locus_tag="VIJ87_12650"
     CDS             complement(1248..>1429)
                     /locus_tag="VIJ87_12650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445288.1"
                     /translation="NERVNPLILVTERQLSLIVPIKASNGSVRAHAKDVKAEILDGSL
                     KLHVTYEFEGVKGEV"
BASE COUNT          365 a          354 c          374 g          336 t
ORIGIN      
        1 actcgccgca aagtatcgcg acctgcgcaa gaccgtaaat agactttcag atcagcagaa
       61 gatggcgacg acatcggaaa gcgatatcga catctttggt tactaccgcg aaggacaacg
      121 actcgcactc cagctattta ccatgcgcga gggtcacatc gttggacgcc gcgagttctt
      181 ctgggaagac ttgtcgcacg acgccttcga tccgtcggat ttcttaagtg aggtgttggc
      241 tcagtactac gcgtcagatt atgtgccgcg tgagatttat gtcccggggg actttacaga
      301 ccgcgatcta ctcgagaagg ccctgactct gcgacgcgga cgacgagtga agatcatgaa
      361 tccacagcgt ggtgaaaagc gcgacatgat cgatctcgtc gagaaaaacg cgaagcttgc
      421 tttcgaacaa cgcttccgga ttctcaagcc tgacatgaaa ctcgtgctcg aagaattgca
      481 ggaaacgctc gaacttccgc acttcccgtc acgcatcgag tcgtttgata tctcgcatat
      541 tcaaggcgcc gagaatgtcg cgggtatggt tgtgtgcgat aacggaaaga tgaatcgctc
      601 cgagtatcga aagtttaaga ttcgtagcgt tgaaggtgcc aacgacgtgg cttcgatgcg
      661 tgaagttgtc acgcgccgtt atcgtcgtct gcttgatgaa ggaaaaactt tacccagtct
      721 aatcatgatc gatggcggaa aggcccagtt gaacggcgct gctgaatcaa tgagcgagct
      781 tggacttgaa gcaattccga tggttggaat agtgaagccg ccccaacgtc ataacgatgt
      841 cgcctacctg ctgatgaagg ggcgtgaaga cgaaccaatc tatctggatt cgcattcgct
      901 gattttgcga ttgctccaga tgatacgtga cgagacgcat cgttatgccg tcacttatca
      961 ccgcaagaga cgagaattgc gcgattttac ttgtgagttg acggcgattc cgggcgttgg
     1021 cgacaaaagg aaaggccgac tgttgcggca ctttggatca atccaacgaa tcgcacgggc
     1081 gagcgtttca gaattgaccc ccttcgttgg caggaaaacc gccgaggaaa tcgcggatca
     1141 cttcgaaaga caaaaagctc tggcagactc aggagaaaac aatctcagat ctcagatctc
     1201 aaatcctcct tgatcgctgg tgaacaatct gaaatctgag atctaactta cacctctccc
     1261 ttaactccct cgaactcgta agtgacatgc agtttcaatg acccgtcaag gatttctgct
     1321 ttgacgtctt tcgcgtgagc tctaaccgaa ccgttactgg ccttgatcgg cactattaac
     1381 gaaagctgcc gttcggtgac gaggattaga gggtttactc gttcgttga
//
LOCUS       DATCGC010001311         1017 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_151242, whole genome shotgun sequence.
ACCESSION   DATCGC010001311 DATCGC010000000
VERSION     DATCGC010001311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1017)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1017)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1017
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151242"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1017)
                     /locus_tag="VIJ87_12655"
     CDS             complement(<1..>1017)
                     /locus_tag="VIJ87_12655"
                     /inference="COORDINATES: protein motif:HMM:NF028442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyl hydrolase"
                     /protein_id="HEY5445289.1"
                     /translation="IASVGAAPVDDLQRSFTNPPDDSRIMMRWWWFGPAVTKTELERE
                     MRAMKDGGIGGFEVQPVYPLVLDNDAAGIKTLPFLSDEFLDALRFTSQKARELGLRFD
                     LTLGSGWPFGGPTVSIDHAAGRLRYEHIKVDANTRFVKVPSIGAGEKFLAAFLAQTEG
                     NSFAQESIRELTNIKDGVIELNSLPAGSHEVLFFISSRTGMQVKRPAVGAEGFVLDHM
                     NRAATDSYLKTVGDRLLQPLGNNLPYSVFCDSLEVYNSDWSSDFLEEFQKRRGYDLKP
                     YLPALVNDMGPQTVALRHDWGRTQYELLNERFLAPMQEWAKRNHTRFRIQDYGVPAAA
                     ISSN"
BASE COUNT          248 a          270 c          267 g          232 t
ORIGIN      
        1 cgttactcga aatcgccgcg gccggcacac catagtcctg aatgcgaaaa cgcgtgtggt
       61 ttcgtttcgc ccattcctgc attggcgcca ggaaccgttc gtttagtaat tcgtattgcg
      121 ttcgtcccca gtcgtgtctc agagcaacag tctgcggacc catgtcgttt acaagtgcag
      181 gaagatatgg tttgagatcg taaccacgac gtttctgaaa ctcctcgagg aaatcgctgc
      241 tccaatcgga gttgtagact tcaagactgt cgcagaaaac ggagtagggc aggttgttgc
      301 cgagaggttg tagaaggcga tcgccaacag tctttagata actgtcggta gccgcgcggt
      361 tcatgtgatc caggacaaaa ccttcggcgc caaccgcggg gcgcttcacc tgcatacctg
      421 tgcgactcga aataaagaag agtacttcat gtgaaccagc cggcagcgag ttgagttcaa
      481 tcacaccgtc tttgatgttg gtcagttcgc gaatactctc ctgtgcgaac gagttccctt
      541 ctgtttgcgc caggaatgcc gcgagaaact tttcgcccgc gccaatcgac ggcactttta
      601 caaaacgagt gtttgcatcg accttgatgt gttcataacg cagacgtcct gccgcgtgat
      661 caatcgagac agtcggtcca ccaaaaggcc aaccgctacc taaagtcagg tcaaaacgca
      721 gaccaagttc acgtgctttt tgtgaagtga atcgcagcgc atcaagaaat tcgtcggaaa
      781 gaaaaggcag ggtctttata cctgcggcgt cgttgtcgag aacaagcgga tagactggct
      841 gtacctcgaa tccaccgata ccaccgtctt tcatcgcacg catctcgcgt tcgagttcag
      901 tcttggtaac tgcgggaccg aaccaccacc accgcatcat gattcgggaa tcatcgggag
      961 gattcgtgaa ggaacgctgg agatcgtcga caggtgccgc accaactgac gcgatag
//
LOCUS       DATCGC010001312         1492 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_485391, whole genome shotgun sequence.
ACCESSION   DATCGC010001312 DATCGC010000000
VERSION     DATCGC010001312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1492)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1492)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1492
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_485391"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..940)
                     /locus_tag="VIJ87_12660"
     CDS             complement(<1..940)
                     /locus_tag="VIJ87_12660"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEY5445290.1"
                     /translation="MTDELLQWRSEFPILEKAVYLISHSLGAMPKSTYDRLHEYAEVW
                     ATRGVRAWAEGWWNMPVTVGDEVGKIIGADPGSVVMHQNVSICQSLILSCLEPTPERN
                     KIVYSELNFPSVMYVYEAHARDGKLTIETVKSDDGISVPLERMLAAIDETTLLVPFSH
                     VLFKSAFLQDAKAIIDRAHEVGALVVLDTYQSAGTVPFSVKELNADFATGGSVKWLCG
                     GPGAGYLYVRPDLQNKLEPKTTGWMAHEHPFAFDTELHYASNITRFLHGSPAIQALYA
                     AQSGYRIINEIGVNKIRAKSVRQTEYLIQLAEEAGFV"
     gene            1058..>1492
                     /locus_tag="VIJ87_12665"
     CDS             1058..>1492
                     /locus_tag="VIJ87_12665"
                     /inference="COORDINATES: protein motif:HMM:NF012927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445291.1"
                     /translation="MWKFPKPIRHQIPATVWPTAEEAAKSLLYTPVRIGQQTARNRTW
                     VPAMVPWRATDDGFVTKENLDWYARFAQGRPGVLVVEATGVRDIPSGPLLRIGDDRFI
                     PGLRRLVDVVKEASEGETLLFIQIIDFLVVKRRPEKEKYFDRF"
BASE COUNT          371 a          379 c          383 g          359 t
ORIGIN      
        1 caacgaaccc tgcttcttcg gcaagttgga tcagatactc ggtctggcga acactcttcg
       61 cccggatttt gtttactccg atctcattaa taattcggta gcctgattgt gctgcgtata
      121 gagcctggat ggccggagaa ccgtggagaa accgagttat gttcgaagcg taatgaagct
      181 cagtatcaaa agcaaaaggg tgttcgtgtg ccatccaacc cgttgtttta ggttcgagtt
      241 tgttttgcag atccggtcga acgtaaaggt agcccgcacc tgggccacca caaagccact
      301 ttactgaacc gcccgttgcg aaatcggcgt tgagttcttt cacgctgaac ggaaccgtcc
      361 cggcagattg ataagtgtcc aacacaacga gggcgccaac ttcatgtgca cggtcaataa
      421 tggcctttgc gtcttgaaga aatgcgctct tgaacagcac gtgggaaaac ggcacgagca
      481 gtgttgtttc gtcgattgcg gcaagcattc gttcgagggg aacactaatt ccgtcgtcgg
      541 atttcaccgt ctcaattgtg agcttaccgt cgcgtgcatg ggcctcgtag acatacatga
      601 ccgaaggaaa attcagttcc gagtagacaa tcttgtttcg ttcaggtgtt ggctcaaggc
      661 atgaaagaat cagcgattgg caaatcgaaa cgttctgatg catgaccaca ctgccgggat
      721 cagcgccgat aatcttgcca acctcatcgc cgactgttac cggcatattc caccaaccct
      781 cagcccacgc tcggacaccg cgcgtcgccc acacctcagc gtactcgtga aggcggtcat
      841 aggtgctttt cggcatcgct ccaagactgt gtgaaattaa ataaacagcc ttttcgagaa
      901 tgggaaactc actccgccac tgcaatagtt cgtcagtcaa aaaggtccct ccagacttct
      961 gcattaaagt ctactttacc acagcgagcc ataccccttc tcagaaagca tgatgtcttg
     1021 atcgtctgct cacatgctaa agtgattgcc ctacaacatg tggaagtttc ccaagccaat
     1081 tcgccatcaa atacctgcga ctgtttggcc tacggctgaa gaggcggcga agtcgctgct
     1141 ttacacgcca gtaaggatcg ggcaacagac tgctcgaaac cgaacatggg ttccagcgat
     1201 ggtgccgtgg cgcgcaaccg acgatgggtt tgtaacgaaa gaaaatctcg attggtacgc
     1261 gcgtttcgcc cagggaagac ctggcgtttt ggtagttgag gcgacgggtg tgcgcgacat
     1321 tccgagtgga ccgttgctta gaattgggga tgatcgattc attccgggct tgcgaagact
     1381 ggtcgacgtt gtaaaagaag caagcgaagg tgagacactt ctctttatcc aaatcattga
     1441 ttttctcgtg gtcaaacgcc ggccggaaaa agaaaagtac ttcgataggt tt
//
LOCUS       DATCGC010001313         1633 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_217537, whole genome shotgun sequence.
ACCESSION   DATCGC010001313 DATCGC010000000
VERSION     DATCGC010001313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1633)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1633)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1633
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_217537"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1528)
                     /locus_tag="VIJ87_12670"
     CDS             complement(<1..1528)
                     /locus_tag="VIJ87_12670"
                     /inference="COORDINATES: protein motif:HMM:NF028457.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5117 domain-containing protein"
                     /protein_id="HEY5445292.1"
                     /translation="MIRVTLICLLLLASGLAVNGQPRTADSGRTPTITEKVAGMEKFP
                     GYFPFYWDARAGKLWLEIDKWNTEFLYVESLPAGIGSNDIGLDRGQLGNSFVVRFDRT
                     GPKVLLVAPNFDFRALTNNPDERLAVKDAFAESTLWGFDVAAEEGGRVLVDATPFYLR
                     DVHQVTNTLQRGQQGTYRLDPSRCAFYLPNTKNFPQNTEVETTLTFTGEPAGQFVRQV
                     VPAPEAITVRERHSFVQLPPAGFKPRVLDPRASFFGINFMDFATPIEEPITKRYIARH
                     RLSKKDPNAATSEAVEPIVYYVDRGAPEPVRSALVEGASWWNQAFEAAGYRNAFRVEV
                     MPPNVDPMDVRYNVIQWVHRSTRGWSYGNSLTDPRTGEIIQGRVSLGSLRDRQDFMIA
                     EGLLAPYEKGKSLSPKLMEMVLARLRQLAAHEVGHTLGLQHNYAASPVGRSSVMDYPA
                     PYAKLGPDGVPDLSDAYAKGIGEWDKVAIAYGYQDFSPGTDENAALDRTLSDAFTRGL
                     M"
BASE COUNT          386 a          442 c          428 g          377 t
ORIGIN      
        1 acatgagacc ccgggtaaaa gcgtcgctca acgttcgatc gagtgcggcg ttttcgtcag
       61 tgccgggaga gaagtcctga tagccataag caatcgcgac tttgtcccac tcaccaattc
      121 cttttgcata agcgtcggaa agatctggaa ctccatcagg tcccagcttg gcatacggtg
      181 ccgggtagtc catcactgac gatcgaccta caggactcgc cgcgtagttg tgttggagtc
      241 ccagcgtatg accgacttcg tgtgcagcca gttgtcgcaa gcgcgccagc accatttcca
      301 tgagctttgg cgagagtgac ttcccttttt cgtacggcgc taagaggcct tccgcgatca
      361 tgaagtcctg gcgatcccgc agtgagccaa gactaacccg tccctggata atctctccgg
      421 ttcttggatc ggtaagcgag ttgccatacg accagccacg agtggaacga tgcacccact
      481 gaatcacgtt gtaacgcaca tccatcggat cgacgttagg cggcataact tcaacgcgaa
      541 acgcattcct atacccggct gcctcaaatg cctggttcca ccaacttgcg ccttcaacca
      601 gtgccgagcg aactggctcg ggggcaccac gatcgacgta atagactatt ggttcgacgg
      661 cttcactagt cgcagcattt ggatctttct tcgaaagtcg atggcgagcg atgtatcgct
      721 tggtgatggg ctcttcgatg ggcgtggcaa agtccatgaa gttgatcccg aaaaaactcg
      781 cccgtggatc caacacacgt ggtttgaaac cagcgggcgg tagttgaaca aacgagtgtc
      841 tttcgcgaac ggtaatcgcc tctggcgcgg gaactacctg gcgaacaaac tggcctgcgg
      901 gttctccagt gaatgtcaaa gtagtctcta cttcggtgtt ttgtgggaag ttttttgtgt
      961 ttggtaaata gaacgcgcag cgacttggat ccagacgata agtgccctgc tgcccacgct
     1021 gaagagtgtt ggtgacctgg tgaacatcgc gaaggtagaa cggtgtcgca tcaacgagaa
     1081 cacgtccacc ttcttccgct gcgacgtcaa agccccaaag agtcgattca gcaaaggcgt
     1141 ctttgacagc taacctctca tccggattgt ttgtgagtgc gcggaaatca aaattgggcg
     1201 cgacgagtag aactttcggc cctgtcctgt caaaacgaac aacgaaactg ttgccaagtt
     1261 gaccacggtc gagtccaatg tcgtttgatc caatgcctgc gggtaacgat tcaacgtaaa
     1321 gaaactccgt gttccatttg tcgatctcga gccacaactt gcctgctctt gcatcccagt
     1381 agaatgggaa gtaaccggga aacttctcca tgccggcgac tttctctgtg atcgttggag
     1441 tgcggccaga gtctgccgtt ctcggctgac cattaacggc tagaccagaa gccaacagca
     1501 aaagacaaat caaggtcaca cgaatcatca gggatctcct atcgactatg gtaaagaact
     1561 ccgaccctcc ttggtgcgcg gtggcctggc accgctttgt cataagtacg aacgttagca
     1621 tcacgaacgc ttt
//
LOCUS       DATCGC010001314         1337 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_320426, whole genome shotgun sequence.
ACCESSION   DATCGC010001314 DATCGC010000000
VERSION     DATCGC010001314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1337)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1337)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1337
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_320426"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..674
                     /locus_tag="VIJ87_12675"
     CDS             <1..674
                     /locus_tag="VIJ87_12675"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEY5445293.1"
                     /translation="MRGTQSKGSICVLPAGLEHKASVEGTSDHLALYVDPKLISRAAN
                     DAQLTGTFEIAERYTRSDPVISHVGMVLLAELGSQGLSGRLYAESLANVLAVHLLRYY
                     THDGLTTARFHGGLSGQKLKQVIDFITENYANEIKLAELAQVAGVSNFHFAREFKRTT
                     GTTPHQYLIKFRVERAKSLLTENELPLAEVGLRSGFSHQSHFTRLFRKITGTTPHMYR
                     LGLQS"
     gene            948..>1337
                     /locus_tag="VIJ87_12680"
     CDS             948..>1337
                     /locus_tag="VIJ87_12680"
                     /inference="COORDINATES: protein motif:HMM:NF019339.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5445294.1"
                     /translation="MRIRKLTLAAWLIVLLAAACSAQESLSPIQAGNKLYAEKQYELA
                     IKKYRLVSASDEAYATAIYNIGVCEYELWRTDEAIESYRQAIKLKHGNYWKASFALAI
                     ALEEENRLAEAKEAYIQSIRTSPNENPW"
BASE COUNT          356 a          325 c          340 g          316 t
ORIGIN      
        1 gtatgcgcgg cacccaatcg aaggggagca tttgtgtgtt gccagcgggc cttgaacata
       61 aagcgtcggt agaaggaacg tctgatcacc tggctcttta tgtagatcca aaactaatca
      121 gccgcgcggc aaacgacgct caactgactg gcactttcga aatagccgag cgctacacac
      181 gaagcgatcc ggtcatcagc catgtgggca tggtgctgtt ggcagagctt ggttcgcagg
      241 gtttaagtgg tcgactttac gctgaatcgc tggcgaatgt gttggcggtt catctactca
      301 ggtattacac ccatgacggt ctaacaactg cgcggttcca cggtgggctg tcgggccaaa
      361 agctaaaaca ggttatcgat ttcatcaccg agaactatgc aaacgaaatc aagctggccg
      421 aactcgcgca ggttgctggc gtgagtaatt ttcattttgc tcgcgagttc aaacgaacga
      481 ctggaaccac gccacaccag tatttgatca agtttcgagt cgaacgcgcc aagtcgttat
      541 tgactgaaaa tgaattgccc ctcgcagaag ttggactccg ttcaggtttt agtcatcaga
      601 gtcatttcac gagactgttt agaaagatca ctggaacgac gccgcacatg taccgactcg
      661 ggttacagag ctagagtcgg gcgcttcttt gtactttgtt cttggagctt tgtgcttcgt
      721 tcgctagtca tgagatcgct tctttgttga aggaatcgtt aatcagcgaa caaagaacaa
      781 agtactaagc acaaagatct gcctaagtac cctttacatt tcaaaacggt tctgagccat
      841 tccttagcaa gatcagtcaa ccgttagcaa taactggaaa gaccactgga ccacgtcgtc
      901 cctatactcg cacttcattt ctcgaagagg tttatggagg tatgaaggtg aggatcagaa
      961 agttaacgct agccgcgtgg ctgatagttc tcttggccgc tgcgtgcagt gctcaagaat
     1021 cgctctcccc tattcaagca ggaaacaaac tctacgcgga gaagcaatat gaactggcca
     1081 tcaagaagta caggctggtt tccgcgagtg atgaggccta cgcaacagcc atctacaaca
     1141 ttggcgtttg cgaatacgag ttgtggcgaa cagacgaagc gattgagtct taccggcagg
     1201 ctatcaaatt gaaacacggc aactactgga aggcatcgtt tgcgcttgcg attgcccttg
     1261 aagaagaaaa ccgcctggcg gaagctaaag aagcctacat ccaatcaatt cgcacgtcgc
     1321 caaacgagaa cccctgg
//
LOCUS       DATCGC010001315         2357 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_485416, whole genome shotgun sequence.
ACCESSION   DATCGC010001315 DATCGC010000000
VERSION     DATCGC010001315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2357)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2357)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2357
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_485416"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..591
                     /locus_tag="VIJ87_12685"
     CDS             <1..591
                     /locus_tag="VIJ87_12685"
                     /inference="COORDINATES: protein motif:HMM:NF038114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PxKF domain-containing protein"
                     /protein_id="HEY5445295.1"
                     /translation="LAPNISCPSDVVVNLPMNSTATSMVVSYPAVTATDSCSSSVTVN
                     STPASGSVFPVGTTTVHATADDGAGHTSECSFTVTVQYDFAGFFPPVANLPALNLVQA
                     GRAIPVKFSLSGDKGLGIFGPGSPSSGPIACNSSDPATLLEETVTAGGSSLSYNPVAD
                     QYIYVWKTEAAWAGTCRQLVVQLNDGSIHRANFKFK"
     gene            complement(798..1547)
                     /locus_tag="VIJ87_12690"
     CDS             complement(798..1547)
                     /locus_tag="VIJ87_12690"
                     /inference="COORDINATES: protein motif:HMM:NF024881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma factor"
                     /protein_id="HEY5445296.1"
                     /translation="MSCQHTDELIHGHLDGELELVKSLEIEKHLSACAVCTKNYERLR
                     RLRSALGETTLRYLPSDRLEERLRSALRQESKPKRNRTIFQPRWLVAAASLVLAFIVI
                     WIVGRSLVKPDSGDLLAQEIVASHVRSMMADHLTDVSSSNQHTVKPWFDGKLDFSPPV
                     KDLSQQGFILTGGRLDYIGNRPVAAMVYQRGQHPINLFVWPATGSTNSTETVAVRQGY
                     NLVRWTNGGMTYWAVSELNLPELQQFAQLLH"
     gene            complement(1544..2077)
                     /locus_tag="VIJ87_12695"
     CDS             complement(1544..2077)
                     /locus_tag="VIJ87_12695"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY5445297.1"
                     /translation="MQDQSKTFRFEEIALPHMGAAYNLARWLVHNDHDAEDVVQEAYL
                     RAFKFFSGYYGGDGRAWLLTIVRNTCYAWLKKNRLLRLAEPIEDNLEEAGLDFADPER
                     LFIQSVDSEKIRWALLELPVDFREVVVMREMEGLSYKEIANIVDTPIGTVMSRLARGR
                     KRLQTLLSKTMGKEAGI"
BASE COUNT          576 a          606 c          593 g          582 t
ORIGIN      
        1 ttagcgccaa acatctcgtg tccgtctgat gtggtagtga atctgccaat gaattcgact
       61 gcgacttcga tggtggtcag ctatccagcg gtaacagcga ctgatagctg ctcatccagt
      121 gtcacagtga acagcacgcc cgcctcaggc tcggtgtttc ctgtcggcac gactacggtc
      181 catgcaactg ctgatgatgg cgctggacat acctccgagt gcagcttcac tgtcacggtg
      241 caatatgatt ttgcgggttt cttcccgcca gtcgcaaacc ttccggcgct gaacctggtt
      301 caggcaggaa gagccattcc cgtgaagttc agcttgagtg gtgacaaggg acttggaatc
      361 ttcggtcctg ggtcaccttc ttcgggccca attgcgtgca attccagcga tccggcaaca
      421 cttctggaag agactgtaac tgcaggcggt agcagtctta gttacaatcc agtagccgac
      481 cagtacatct acgtctggaa aacggaggca gcttgggctg ggacgtgccg ccaactggtg
      541 gtgcagttaa atgacggtag cattcaccgc gcaaacttca agttcaagta acttgaagtt
      601 tagcaagttg aataatgagg gcctcgcgat gcgtcgcgag gccttcgtga tatatggcgg
      661 tgggattaac gaaacaaaaa actgatgggc tcttgcaagg cgtcacgagc ttctttcact
      721 ccggaggagt gacatgttta tagccgagtg atccttagat aacgagagtg ctccgttgga
      781 gtgcaatatg tcagctacta atgcaacagt tgcgcgaact gctgaagctc tgggagattc
      841 agttctgaca ctgcccagta agtcatccct ccattcgtcc aacgaaccag gttgtagccc
      901 tgacgcaccg cgactgtttc cgttgagttt gtcgagcccg ttgccggcca aacgaacaaa
      961 ttaatcgggt gctgcccacg ttggtacacc atggccgcga ccggacgatt gccgatgtaa
     1021 tcgagccgtc cgccagtcaa gatgaatcct tgctgactca ggtcttttac tggaggggag
     1081 aaatcaagct tgccatcaaa ccagggcttg acagtatgct ggttagacga agaaacgtca
     1141 gttagatgat cggccatcat tgaacgcaca tgactcgcaa ctatttcctg agctaaaaga
     1201 tctccgctgt cgggtttcac gagagatcgg ccaacgatcc aaatcacgat gaaagccagc
     1261 actaacgacg ccgctgcaac taaccagcgc ggttggaaga tcgttcgatt tcgtttgggt
     1321 ttactttctt gccgcaatgc tgatcgcaag cgttcctcta atcgatctga gggcaaataa
     1381 cgcaaagtgg tttcgcccaa agctgatcgt agtctgcgaa ggcgttcgta gttcttagta
     1441 caaacggcgc aagcggagag atgcttttcg atctccaaac tcttcaccag ctctaactcg
     1501 ccatcgaggt ggccgtgaat caattcatct gtgtgctgac aactcaaatg cctgcctcct
     1561 tgcccatcgt ctttgacaga agtgtctgga gtcgtttccg tccgcgtgcc agtcgcgaca
     1621 tgaccgtgcc gatcggtgtg tcgactatgt tagcgatctc cttgtaagac agcccctcca
     1681 tttcgcgcat caccacaact tcacgaaaat caactggaag ctctaacaag gcccatctga
     1741 tcttttccga gtcgacactc tgtataaaaa gcctctctgg atcagcgaag tcgagaccag
     1801 cttcttcaag gttgtcttca atgggctctg caagtcgtaa cagacggttc tttttcaacc
     1861 aggcgtagca agtgtttcgc acgatggtta ataaccatgc gcggccatct ccaccgtaat
     1921 agccactgaa gaacttaaac gcgcgcaagt aagcctcttg aacgacgtct tcagcgtcgt
     1981 gatcgttgtg taccagccaa cgcgccagat tgtaggcagc gcccatgtgc ggaagcgcaa
     2041 tctcttcaaa ccggaaggtt ttgctttgat cttgcaactt agtccccagc tgaggttctc
     2101 ctcttctaat gtgagaccgg agtcagtgct cttttattcc tgacaaattt tcactgcaga
     2161 gcgggaatat tcacacacga catcgaatcc ttataggcaa gaaagaatcg aatgagaggt
     2221 aacgaaaatg aatgtaataa ttaagtggct attaaatcca ccaacagaag gtccaagagc
     2281 agtaatcctg ctccgtttaa tggctggcgc tgtatttctg tgggagggaa ttcttaagtt
     2341 cgtctatccg aatcagg
//
LOCUS       DATCGC010001316         1618 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_151289, whole genome shotgun sequence.
ACCESSION   DATCGC010001316 DATCGC010000000
VERSION     DATCGC010001316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1618
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151289"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1463)
                     /locus_tag="VIJ87_12700"
     CDS             complement(<1..1463)
                     /locus_tag="VIJ87_12700"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEY5445298.1"
                     /translation="MAESTKLVRGLGLLDATMIVVGSMIGSGIFLTSAESSRLVGSPG
                     WLLMAWALAGVLTITGALCCAELAAMWPRAGGQYVFLREAYGPSIGFLFGWGLFLIIQ
                     SGTVAAVAVAFANFTGVLTDKVSAENYLISPIVLIRPFRLGAVSFNGYALCLSSQQLL
                     AVVMILFLTFVNTRGLKIGKVIQNTFTFTKTAALLGLILIGLFLGWNHGSAAYTSSWW
                     RPWENGWQPSVAQVGFEPLTHGMLVLALVMLVGRAMVGPLFAQSAWNNVTFTAGEVRD
                     PGRNLPRSLLLGCGLVVGLYLLANLAYVVTLPLAGIQNAPQNRVATALMQAALGPKGT
                     VIMAIAIMISTFGCNNGLILAGARVYYAMARDGLFFKKVGSVNKANVPAIALVTQGLW
                     AAFLVLPRTVTANAQTGAYSYGNVYTQLLEYIVSADLIFYALMVGAVIVMRVKAPEIE
                     RPYRTFGYPIVPLIYIVLAGLFIIDLAYLAPSTSGIG"
BASE COUNT          446 a          442 c          400 g          330 t
ORIGIN      
        1 tatccaattc ctgaagttga gggggcgaga tacgcaagat cgataatgaa cagtccagcc
       61 agcacgatgt agatgagtgg aactattgga tagccgaacg ttcggtacgg tcgttcaatc
      121 tcaggagcct tcaccctcat gacaatcact gcgccgacca tcaacgcgta gaagatcaaa
      181 tcagccgaaa cgatgtactc cagcaattgt gtgtagacgt taccgtaact gtaggcaccc
      241 gtctgcgcgt ttgcagtcac ggttcgcggc aacacaagga acgccgccca aagtccctgc
      301 gtcacaagtg caatcgcagg cacgttggct ttgttaacgc tgccgacctt cttgaagaac
      361 aaaccgtcgc gcgccattgc gtaatacact cgcgcgcccg cgagtatcaa tccgttgtta
      421 cacccaaacg tcgaaatcat gatcgcgatg gccatgatga ccgtgccttt tgggccaagg
      481 gcagcctgca tcaacgcagt cgcgacgcga ttttgtggcg cgttctgaat gccggcgagc
      541 ggcaaggtca caacgtaagc aaggttggcg agtagataaa gcccaacgac aagtccgcat
      601 cccaatagca acgaacgcgg aaggttgcga cccggatcac gtacttcacc agctgtgaac
      661 gtgacattat tccaggctga ttgcgcgaag agtggaccaa ccattgcccg tcctaccaac
      721 atcacgagag caagcacgag cattccgtga gtcaacggtt caaaaccaac ttgagccaca
      781 ctcggctgcc agccgttctc ccatggacgc caccacgacg aagtgtaagc tgcgctgcca
      841 tggttccatc ccaggaataa accgatcaga atcaagccaa gcaacgccgc tgtcttcgta
      901 aacgtaaatg tattttggat tactttgccg atctttaagc cacgcgtgtt gacgaacgtt
      961 agaaagagaa tcattacgac agccaacaac tgttgactgg aaagacacaa cgcgtaaccg
     1021 ttgaatgaaa ctgcgcctaa cctgaatggt ctgattaaga cgattggtga gatcaggtaa
     1081 ttctcggcag agaccttgtc tgtcagaacg ccagtgaagt ttgcaaaagc aaccgccacg
     1141 gccgcgactg ttccgctttg aataatcagg aacagtcccc agccaaataa gaagccaatc
     1201 gatgggccgt acgcttctct gaggaacacg tactgtccgc cggcgcgtgg ccacatcgca
     1261 gcgagttcag cacaacagag cgctccggtt atcgtgagca caccagccag cgcccacgcc
     1321 atgagcaacc aaccaggtga gccaaccaat ctcgacgact cagctgacgt gagaaagatc
     1381 ccggagccaa tcatcgagcc aacaacgatc atcgtggcgt cgagtaggcc caaaccgcgg
     1441 acgagttttg ttgattcggc cataaaagaa tctcaggagt ggactctaaa atataaggtt
     1501 tcatgtccga taaactttag tttgtcgttg tctctgcaga ttcgctagtt cgaaggttca
     1561 ttctgaaaaa ctagcgagct gccagcttaa aacgacaaac taaagtttat cggacatt
//
LOCUS       DATCGC010001317         2719 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_453208, whole genome shotgun sequence.
ACCESSION   DATCGC010001317 DATCGC010000000
VERSION     DATCGC010001317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2719)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2719)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2719
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_453208"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2515
                     /locus_tag="VIJ87_12705"
     CDS             <1..2515
                     /locus_tag="VIJ87_12705"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY5445299.1"
                     /translation="LLYLLLAATTPAPAQQALVNSSLLVQQQIQTSLPNELASTPSSK
                     VAISETLRTQVARLSSRLCIVLDASSWSLYKWRIVATVGIVALQSLLIAGLAFERRRK
                     RMAARSLEESENRYRNVVETQTELICRFLPDSTLTFVNDAYCRYFGKNREELIGSKFV
                     YLIPENDQEMTLRHINSLVENPPTELNEHQVIRPDGSIGWHQWENHVISRDGLVELQG
                     IGRDITERKLAEEALSVSEEFNRRIVESSSDCVKVLDLDGNLVYMSEHGQKLLEVDDV
                     ESLIGTSWIDLWKGDDGQSARDAIEKARNGDLGAFRGFGLTLKGTPKWWHTVISPMRG
                     PSGNVERLLAVTRDVTNQELAVNALQESEQRFAKAFRGNPQPMSLTTLNGGTYIDVNA
                     SFLNMTGYLREEVIGKTSLELNVFETPDHRRALLVDPLTNSGANTNFEMRFRTKSGAF
                     RVLLSSAELLEISGQKCILVASSDITERKALEENLRLSKREFSTLVENSPDIISRLDK
                     NLRYIYVNPTLERLTGIPTEHIVGRTPREISSSNYASDGLEEGCNEAIKTKKSVQRAS
                     EYLGRKYWTRIIPELSDEGIVESVMTISEDVTDRLRAEQELVQLTVRLFTLQDEERRR
                     IARELHDVTAQNLFAISVNLAKVSQLIPHEPGDAHQLIDECQSLGDQSLQEIRTLSYL
                     LHPPLLDQAGLISALQWFVEGFTKRSGIYVNLYAQPIGRLPSEIEMTLFRVVQEALTN
                     VRRHSASETASIRLEKKQSEILLEIKDQGRGLTKPRDEEDSNGLISMGVGIPGMRQRL
                     RQLGGKLEIAFTDNGTTISAIVPLKNGGNHVTHPSRGRS"
     gene            2484..>2719
                     /locus_tag="VIJ87_12710"
     CDS             2484..>2719
                     /locus_tag="VIJ87_12710"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY5445300.1"
                     /translation="MLRILLADDHDVVRRGLRDQLSAHEGWEICGEAADGRQAVKLAT
                     KLAPDVAVIDLSMPELNGLEATRQIRRESPRTEIL"
BASE COUNT          738 a          659 c          693 g          629 t
ORIGIN      
        1 gctgctttat ctcttattgg cggcaacgac tcccgcgcct gcacaacaag cacttgtcaa
       61 ttcctcgctt ctggttcaac agcagattca gacctccttg ccgaacgagc ttgcttccac
      121 cccgagcagt aaagttgcaa tctctgaaac attgcgtacc caagtggccc gcttaagtag
      181 ccgtctttgc atcgttctcg atgcatcttc ctggagtcta tacaaatgga ggatcgtcgc
      241 gaccgtcgga atcgtcgcct tacagagtct attgatcgcg ggcctcgcat ttgaacgtag
      301 acgaaaacga atggcggcac gctcactcga ggaaagcgaa aaccgttacc gcaatgttgt
      361 tgagactcaa acagaattga tctgtcgttt cctccctgat tcgaccctca ccttcgtcaa
      421 tgatgcttat tgtcgatact ttggaaaaaa ccgcgaagaa ctgatcggct cgaagtttgt
      481 ctatctcatc ccggaaaacg atcaggaaat gactctgcga cacatcaatt cattggtcga
      541 gaatcccccc accgaactca atgaacacca ggtgattcgt cctgacggta gtatcggctg
      601 gcatcaatgg gagaatcacg tcatatcgcg agatggactt gttgagttac aaggaattgg
      661 gcgcgacata acagagcgca aactggcgga agaggcgctt agcgttagtg aggagttcaa
      721 tcggcgaatc gtcgagagta gttctgattg cgtaaaggtc ctggatcttg acggtaatct
      781 cgtctacatg agcgagcatg ggcagaaact attagaagtt gatgatgtcg agagtttgat
      841 tggaacctct tggattgact tgtggaaggg cgatgatggt cagagcgcta gagatgcgat
      901 tgaaaaagca cgaaacggcg atctcggcgc ctttcgaggt tttggactaa cactgaaagg
      961 cacaccaaag tggtggcaca cggtgatttc tccaatgcgc ggaccaagtg gcaacgttga
     1021 gcgtctgctg gcagtaacca gagatgtcac caatcaggaa ttggcggtga acgcgcttca
     1081 ggaaagtgaa cagcgtttcg ccaaagcatt tagaggaaac ccacaaccga tgtcgttgac
     1141 aactttgaat ggcggcacat acatcgatgt caacgccagt tttcttaaca tgaccggtta
     1201 tttacgcgaa gaggtaattg gaaagacgtc cctcgaactc aatgtttttg aaacgcccga
     1261 ccacagacgg gctctgttgg tcgacccctt gaccaactct ggagcaaaca ccaatttcga
     1321 aatgcggttt aggacgaaga gtggtgcgtt tcgggtgctt ctctcatcag ccgaattatt
     1381 agaaatcagt ggacagaaat gcatcctggt ggcttcgagc gatatcactg aacgtaaagc
     1441 ccttgaggag aacctgcgat taagtaaacg tgagttttcg accctggttg agaactcccc
     1501 cgacatcatt tctcgtctcg acaaaaatct tcgctacatc tatgtgaacc cgacgcttga
     1561 aagacttaca ggaattccaa ccgaacatat agtcggcaga acacctcgcg agatttcctc
     1621 gtctaattat gcttcggatg gattggaaga gggctgtaac gaggcgataa aaacgaagaa
     1681 atcagtccag cgagcttccg aatatctggg aaggaaatac tggacgcgca tcattcccga
     1741 gttgtcagat gaaggtattg ttgaatcagt aatgacaata agtgaagacg ttacggatcg
     1801 acttcgcgca gaacaggaac tcgtgcaact aactgttcgc ctgttcactc tgcaggatga
     1861 agaacgacgt cgtatagctc gggaactgca tgacgtaacc gctcagaacc tgtttgcaat
     1921 ctcagtcaac ctggcgaagg tcagtcaact aatccctcat gagcctggcg atgcccacca
     1981 actaatcgac gaatgccagt cactgggaga tcagtcgtta caggagattc gaacactttc
     2041 gtatctcctt catccaccac ttctcgatca agctggattg atatccgctc ttcaatggtt
     2101 cgtcgaaggt tttactaaac gcagtggtat ttatgtaaat ctttatgctc agccaatcgg
     2161 gcgtcttccc tcagaaatcg agatgacgct tttccgggtt gtgcaggaag cactcacaaa
     2221 tgtacggcgt cactcggcaa gcgagaccgc aagcatcaga ttggaaaaga aacagagtga
     2281 gatattgctg gagatcaagg accagggtcg cggactaaca aagccccgag atgaggaaga
     2341 ttccaatgga ctcatttcga tgggtgtcgg catccccgga atgcgacaac gactacggca
     2401 acttggaggg aagctggaaa tcgctttcac tgacaacggc actacgattt ctgcgatagt
     2461 gccacttaag aacggaggaa accatgttac gcatccttct cgcggacgat catgatgtag
     2521 tccgacgcgg actacgcgat cagttaagcg cacacgaagg ttgggagatt tgcggagaag
     2581 ccgcagatgg aaggcaagct gtcaaacttg caacgaaact ggctcccgat gttgccgtga
     2641 tcgatctttc aatgcccgag ttgaatggac tggaggccac gcgccaaatc cgccgcgaat
     2701 caccgcggac ggaaatact
//
LOCUS       DATCGC010001318         1080 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_351525, whole genome shotgun sequence.
ACCESSION   DATCGC010001318 DATCGC010000000
VERSION     DATCGC010001318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1080)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1080)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1080
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_351525"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1080
                     /locus_tag="VIJ87_12715"
     CDS             <1..>1080
                     /locus_tag="VIJ87_12715"
                     /inference="COORDINATES: protein motif:HMM:NF004952.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HEY5445301.1"
                     /translation="GLIKGKVRSVVKGGLMVNIGVEAFLPASQIDVVPPKDLQQFVGN
                     TYDFKIVKLNDDRKNVVLSRREVIEKERSEKRQKFLENVNLGDRVVGTVKNITDFGAF
                     IDLDGMDGLLHVTDITWGRLGHPGELLKVGQQLEVVVLDINKEKERVSLGLKQTQKNP
                     WDQIEERFPAGQRIKGKITNLVPYGAFVEIEEGVEGLIHVSELSWTKRIMRPSDILSV
                     GQEVEAVVLGVNKEEQKISLGLRQLETNPWDEIEKKFTIGRQVKGTIRNMTAYGAFVE
                     LEEGIDGMIHVSDLSWTRKINHPSEMFKKGDEVEAVVIDIDKVNQRISLGIKQLADDP
                     WKMIDEKYKIGDLVNGKVTKLASFGA"
BASE COUNT          303 a          257 c          311 g          209 t
ORIGIN      
        1 cggcctcatc aaaggcaagg tcagatcggt ggtcaaaggc ggactgatgg tgaacatcgg
       61 cgtggaagca tttttgcctg catcacagat cgacgtcgtg ccgccaaagg atttacagca
      121 gttcgtcggc aacacctacg acttcaaaat cgttaagctc aatgacgacc gaaaaaacgt
      181 cgtgctcagc cggcgcgagg tgattgaaaa ggagcgcagc gaaaagcgcc aaaagttcct
      241 cgagaacgta aacctcggcg accgcgtagt cggtaccgtg aaaaacatca ctgacttcgg
      301 agcgtttatt gatctcgacg ggatggatgg cttgctgcac gtgactgaca tcacctgggg
      361 gcgattggga catcccggcg agctattgaa agtcggtcag caattggaag tcgttgtact
      421 tgacatcaac aaggaaaagg aacgcgtttc gctcggactg aagcaaacgc agaagaaccc
      481 gtgggatcag atcgaggagc gtttccctgc cggccagcgt attaaaggca agatcacgaa
      541 tcttgtgccc tacggcgctt ttgttgagat agaggaaggc gtagaaggtc tgattcacgt
      601 atcagaactt tcatggacga aacgcatcat gcgtccttcc gacatcctca gcgtgggcca
      661 ggaagtcgaa gccgttgtgc tcggagttaa caaagaggaa caaaaaattt cgctcgggct
      721 gcgccagctc gagacaaacc cgtgggatga gatcgagaag aagttcacca tcggcaggca
      781 ggtcaagggc acgattcgga acatgaccgc ttatggcgcg ttcgtggaac tggaggaagg
      841 catcgacggc atgatccacg tgtccgattt aagctggacc cgcaaaatca atcaccccag
      901 cgagatgttt aagaaaggcg atgaagtgga agctgtggtg atcgacatcg acaaagtcaa
      961 tcaacgaatc agtctgggga ttaaacagct ggccgatgat ccctggaaaa tgatcgatga
     1021 gaaatacaag atcggggacc tcgtcaacgg caaagtaacc aagctcgcca gctttggcgc
//
LOCUS       DATCGC010001319         1140 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_417064, whole genome shotgun sequence.
ACCESSION   DATCGC010001319 DATCGC010000000
VERSION     DATCGC010001319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1140)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1140)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1140
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_417064"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1140
                     /locus_tag="VIJ87_12720"
     CDS             <1..>1140
                     /locus_tag="VIJ87_12720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445302.1"
                     /translation="TISALQYRLAEYIAEMLKSEETGEAIKRFVDKQVDELAERRFGD
                     MVSNQSLDEVLSFIQQRLQRAITDEGFEHKIRDFVSGRLNDLSRSNATLGETFTPDTV
                     AFIKERIDQQVPPIVHHLADIATSQTTRKQIGSLIKLEVDQYYEQLSLIKKIFISRER
                     IHREVDDLVNKTLPKRIEEYLRGPAFEQEATAFLNTTIDNFLAKPLNELIGQFEGGKF
                     EELKDQVTSRLLEVVRSEGLGSSISTYLSEAIDRLQPQTLGSVMEQIDPRSITVAKDF
                     LTRSLLGLLSRDDTARTINAILTSQVERLLIAPIGRLGDHVSENSMHRASSALVDRIT
                     FAARERLPIAIAEFDVGGVVRKKVSDYPIEKLEALVLSVAQHHLKT"
BASE COUNT          310 a          288 c          279 g          263 t
ORIGIN      
        1 cactatttcg gccctccagt atcgactcgc tgaatacatt gccgaaatgc tcaaaagcga
       61 agagaccggt gaagccatca agcgttttgt agacaagcaa gtggatgagt tagcagaacg
      121 acgctttggc gatatggtca gcaaccaatc gctcgacgag gttctgagct tcattcagca
      181 acgtttgcag cgcgccataa ccgatgaagg gtttgagcac aagattcgcg actttgtttc
      241 gggacgcctg aacgatctgt ctcggagcaa tgctacgctt ggcgagacct ttacaccgga
      301 cacagtcgcc ttcatcaaag aacgcatcga tcaacaagta cccccaatcg ttcaccacct
      361 cgcagacatc gcgacgagtc aaacaaccag aaaacaaatc ggttcgctaa taaagttgga
      421 agtcgatcag tattacgaac agctgtcact gatcaagaaa attttcatct cacgcgaacg
      481 tatccacaga gaagtcgacg atctcgtcaa caagactttg cccaagcgga tagaggaata
      541 cctgcgtgga ccggcgttcg aacaggaagc cacagcattc ttgaatacaa cgatcgacaa
      601 cttcttagcc aaaccgctaa acgaactcat cgggcagttt gaaggtggga aatttgagga
      661 attaaaagat caggttacca gccgcttgct cgaagttgtg agaagtgagg gcctgggttc
      721 gtcgatctct acatatttga gcgaagcaat agatcgttta cagccgcaaa ctcttgggtc
      781 agtgatggag caaattgatc cccggtctat cactgttgcc aaggacttct tgacacgcag
      841 tctgcttggc ctactttcac gcgacgatac tgcacgtact atcaacgcga ttcttacctc
      901 acaggttgag cggctcttga ttgcgcctat tggacgtctc ggcgatcatg tctctgaaaa
      961 ctcgatgcat cgggcgagtt cggccctcgt cgaccgaatc acatttgcag cacgcgaacg
     1021 tttaccaatc gcaattgcag agtttgatgt gggtggtgta gtgcgcaaga aggtttcgga
     1081 ttatcccatt gaaaagctcg aagcgctcgt gctctcggta gcgcaacatc acttgaagac
//
LOCUS       DATCGC010001320         1574 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_151357, whole genome shotgun sequence.
ACCESSION   DATCGC010001320 DATCGC010000000
VERSION     DATCGC010001320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1574
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151357"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..631
                     /locus_tag="VIJ87_12725"
     CDS             <1..631
                     /locus_tag="VIJ87_12725"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY5445303.1"
                     /translation="RGPLSILTDISLSLSKGDAVSIMGPSGTGKSTLLYIIGALEPPT
                     SGTVTLDGQNPFTLNQKQLAAFRNQQIGFVFQDHCLLPQCSVLENVLTPTLVSTAHRD
                     ATERARELIKQVGLIERLDHRPAELSGGEKQRVSLARALITKPTLLLCDEPTGNLDHQ
                     SAEVVASMLLALHKQQETILIVVTHSAELGARLPIRYELVDEQLRLNVR"
     gene            710..>1574
                     /locus_tag="VIJ87_12730"
     CDS             710..>1574
                     /locus_tag="VIJ87_12730"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5445304.1"
                     /translation="MRLSQLIKRSLRYYWRNNLAVVLGVAVAVAVLAGALLVGDSVRA
                     SLRNLVVERLGQTSFVVTSPNFFRGQLASDIQNDSRFVASGFRSVCPLISLEGTVTHE
                     ASKRVASSIRVYGVDDRFWTFNQREGTGPKNRNSFISENLARELGTTGSDSLLLQIQK
                     PSEIPLESLHSKKEDLGKTLRLTLSGVLNAEALGEFSIQAQQSGVRAVYVPLDLLQRE
                     IEQTDKVNLLLISETTGSESTVKETVLNSILRERVTLADLGVQLRPVMLEDQASISLE
                     HESKVIDDLLAR"
BASE COUNT          398 a          415 c          380 g          381 t
ORIGIN      
        1 tcgcggaccg ctgtcgatcc tcacagacat ttcgctttca ctttccaaag gcgatgcagt
       61 ttcgatcatg ggtccttccg gaactggaaa gagcaccctg ctctacatca tcggagcgct
      121 cgaaccgcca accagcggaa cagtgacact agatggtcag aatcctttca ctctgaacca
      181 aaaacagctc gccgcatttc gcaatcaaca aatcggcttc gtctttcaag accactgtct
      241 actaccgcaa tgttctgtgc tcgagaacgt gctgacaccc acactggttt ctaccgctca
      301 ccgggatgcg acggagcgcg cacgcgagct aatcaaacaa gtcggattaa ttgagcgact
      361 cgatcatcgc cctgccgagc tttcaggcgg tgaaaagcaa cgcgtctcac tcgcccgcgc
      421 actaatcaca aaaccaacgc tactactctg tgacgaaccg actggcaatc ttgaccacca
      481 gtcagctgaa gtagttgctt caatgttgtt ggccttgcac aagcagcagg aaacgattct
      541 tatcgtcgtt acccacagcg ccgagctcgg ggcacgactc ccgattcgct atgaacttgt
      601 ggatgaacaa ctgcgattga atgtccgata atcttcagat tgtcgttgag aatcggttga
      661 atagcctcca aagacagatc gacaatctga agattatcga acattgaaga tgcgcttatc
      721 gcaactaatt aaaagaagcc ttcgctacta ctggcgaaac aacctcgccg ttgtgcttgg
      781 tgtagctgtc gccgttgctg tactggccgg tgctttacta gttggtgact ctgttcgggc
      841 aagtctcaga aaccttgttg tcgaacgcct gggccaaacc agtttcgtcg ttacttcacc
      901 caattttttt cgcgggcagc ttgcttcaga tattcagaat gattctcgtt tcgtcgcgag
      961 tgggtttcgt tctgtttgcc ctttgatttc tctcgaggga acagtcacac acgaggcgag
     1021 caagagagtc gcttcgagta ttcgtgtcta tggtgtcgat gatcgttttt ggacttttaa
     1081 tcaacgcgaa ggaactggcc cgaagaatcg gaacagtttc ataagcgaga atctcgcgcg
     1141 cgaattggga acaacaggca gcgactcgtt gctgctgcaa atccaaaagc cttccgaaat
     1201 tccactcgag tcgctacata gcaagaaaga agacctggga aaaaccttac gcttgaccct
     1261 gagcggcgtc ttgaacgccg aagctctggg tgagttttca atacaagcgc aacagtccgg
     1321 cgtccgcgct gtctacgtcc cactcgatct cctgcaacga gagattgagc agacggacaa
     1381 ggtgaacttg cttttgattt cagaaactac aggaagcgaa agcactgtta aagagacagt
     1441 ccttaacagc atcttgcgag agcgtgtaac gcttgcagat cttggtgttc aactccgacc
     1501 agtaatgctt gaagatcaag cttcgatttc gctcgaacac gaaagcaaag ttatcgacga
     1561 cttgttggcg cggg
//
LOCUS       DATCGC010001321         1344 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_53337, whole genome shotgun sequence.
ACCESSION   DATCGC010001321 DATCGC010000000
VERSION     DATCGC010001321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1344)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1344)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1344
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53337"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..566)
                     /locus_tag="VIJ87_12735"
     CDS             complement(<1..566)
                     /locus_tag="VIJ87_12735"
                     /inference="COORDINATES: protein motif:HMM:NF024927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445305.1"
                     /translation="MVEAMRHEAFYHGGQYMNKDLGLYLGWMGHRGEFCDCMPLFNPT
                     RDIVMIFHGQNYLDDETLRSKMRAGSRINGSNASYLIDLYTELGDEFFRCLNGWYSGV
                     IADFRTRKITLFNDRYGMGRLYVYEGDNEILFASEAKSLLKVRPHVRAIDPEALAQFL
                     RCDCVLGNKSLFKNISLLPGGSSWSFNG"
     gene            complement(686..>1344)
                     /locus_tag="VIJ87_12740"
     CDS             complement(686..>1344)
                     /locus_tag="VIJ87_12740"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY5445306.1"
                     /translation="LINFIDPNGDEIIFDAGCGTGSNIQLLSSKVRQIIGVDYCPGAV
                     DRCQRRIASRDLRNATVMQGRVTDLTLGDHSVDKVLCLSVLQYMDDTEVIRALTEFKR
                     ILTAGGILVLHVKNLSSLYLSSLWAIKRLKLLFGKQTKLEYYRSFRWYLKALTALGFE
                     IVNYNSFSLFRLEKLPDHLVFLLRRFELRNYNKGIFRLGFVRRHGAELKIKARVVKAS
                     "
BASE COUNT          377 a          346 c          277 g          344 t
ORIGIN      
        1 ttgccattaa atgaccacga ggacccaccg ggaagcagtg agatattttt aaacagtgac
       61 ttattcccaa gtacacagtc gcatcgcaga aattgcgcta gtgcctcagg gtcgatcgcg
      121 cgaacgtggg ggcggacctt aagcagggac tttgcttcgg aggcgaatag aatttcattg
      181 tccccttcat atacataaag ccggcccatc ccatatcgat cattgaacag cgtgattttc
      241 cttgttcgaa aatctgcaat cactccagaa taccagccat tcaggcagcg aaagaactcg
      301 tctcccaatt ctgtatacag gtcaatcaaa tacgaagcgt tagatccatt gatcctactt
      361 cctgcacgca tcttggagcg gagtgtttcg tcgtctaggt aattttgacc atgaaaaatc
      421 atcacgatgt ctctcgtcgg gttgaacaac ggcatgcaat cacaaaactc cccccgatgg
      481 cccatccagc ccaaataaag acctaagtct ttgttcatgt actgaccgcc atgataaaaa
      541 gcttcatggc gcatagcctc gaccatgaga ctcaagtctc gctctatgcc gtcgtacgga
      601 gatttcctaa ttatacctgc aattcctggc ataatatcaa ttgacttaca attaacgcct
      661 gtttctgacg atcaacgctt acgaatcacg aagccttaac cactcttgcc ttgatcttga
      721 gttccgcacc gtgacggcga acaaaaccaa gtctgaatat ccctttatta taatttcgca
      781 gttcgaatct tcgtaacaag aagaccaagt ggtcaggcag cttctccagc ctgaaaaggc
      841 tgaatgagtt atagttcacg atttcaaagc ccaatgcggt caacgctttc aggtaccatc
      901 gaaaggaccg ataatattca agcttggtct gcttcccgaa aagcaacttg agccttttaa
      961 tcgcccacaa actcgacaaa taaagcgaag agagattttt gacgtggaga acaaggatac
     1021 cacccgcagt aaggattcgt ttgaactcag ttagggcacg tatcacttct gtatcatcca
     1081 tatactgcag aacgctcaga caaagaacct tatcaacaga atgatcacct aatgttaggt
     1141 cggtaacacg tccttgcata actgttgcat tcctgaggtc ccttgacgca attcgtcgct
     1201 ggcagcggtc gacggcgcca gggcaatagt ccaccccgat aatttgccta acctttgagc
     1261 taagtaattg tatgttactt cccgtaccgc agccggcatc gaagattatt tcgtccccgt
     1321 ttggatcgat gaagttgatc aact
//
LOCUS       DATCGC010001322         2554 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_251792, whole genome shotgun sequence.
ACCESSION   DATCGC010001322 DATCGC010000000
VERSION     DATCGC010001322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2554)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2554)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2554
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251792"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(39..1850)
                     /locus_tag="VIJ87_12745"
     CDS             complement(39..1850)
                     /locus_tag="VIJ87_12745"
                     /inference="COORDINATES: protein motif:HMM:NF014850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 2 TIM barrel-domain
                     containing protein"
                     /protein_id="HEY5445307.1"
                     /translation="MVINKLLFVSVLILTLALSIAGQQSAGLINNTAGRQATSLSGRW
                     QIIIDPYETGYYDYRYEPRGDGYFKNTKPASPSDLVEYDFDSSQQLLVPGDWNSQDDK
                     LLFYEGTIWYKKSFNYQKKDRTRLFVYFGGANYLADVYLNGQKLGRHEGGFTPFNFEI
                     TSLVKEKDNFLVVKVDNKRRRDAVPTLNTDWWNYGGLTREVKLVEVADTFVQDYFLQL
                     KKGSLNEIAGWVKLNGNAANQTVDIEIPEAKIKQSVSTDANGYAPVSFKANLDLWSPA
                     SPKLYDVKIASGGDAVTDRIGFRSIETKGTDILLNGKPIFLRGISIHEESPRGGRAYG
                     EDDARTLMTWAKELGCNFVRLAHYPHNESMIRMADELGVMVWSEIPVYWTILWDNAET
                     FENARNQLGESISRDKNKASVILWSVANETPVGDARLKFLKGLIDYTRSLDSTRLLTA
                     ANERHYENPTTQVVDDPLGAYLDVLGCNEYVGWYDGIPAKADGLTWKVTLNKPLIISE
                     FGADALFGNHGDKNARWTEEYQKDLYEHQIAMLRKIPALRGMSPWILTDFRSPRRPLP
                     GIQDFYNRKGLISSRGERKQAFFVLQSYYRELIKSGK"
BASE COUNT          597 a          683 c          606 g          668 t
ORIGIN      
        1 cccgttggtt cgaaaggggt tactaaaggg atcgggattt acttgcctga ctttatcaat
       61 tcacggtagt aactctgcaa cacaaagaat gcctgcttcc tttcgccacg acttgagatc
      121 aatcccttgc gattgtagaa atcctggatg cccggcaacg gacgtcttgg cgagcggaag
      181 tcagtcagaa tccagggcga cattccccgg agcgcgggaa tctttcggag catcgcgatc
      241 tgatgttcgt acaaatcctt ctggtactcc tcggtccatc tcgcattctt atcaccgtga
      301 tttccaaaca gcgcatcggc gccaaactcg ctaataatca acggcttgtt aagagtaact
      361 ttccacgtta gtccatccgc ctttgccggg atgccgtcgt accatccgac atattcgttg
      421 cacccaagca cgtcgaggta cgctcccaag ggatcatcta caacctgagt cgtgggattc
      481 tcgtagtgac gctcgttggc cgcggtaagc agacgcgttg agtccaggga gcgagtgtaa
      541 tcaatcaagc ctttcagaaa cttgagtcgc gcatccccga ccggggtttc attggcaact
      601 gaccatagaa tgacggaagc tttgttcttg tctcttgaga tactttcacc gagctgattt
      661 cgcgcgttct cgaatgtctc agcattgtcc caaagaattg tccagtaaac aggaatctct
      721 gaccagacca tgacacccag ctcgtcggcc attctgatca tgctttcgtt gtgcggataa
      781 tgtgcgagcc gcacaaagtt gcagccgagt tccttggccc acgtcataag cgttcgcgcg
      841 tcgtcttcac catatgctcg acctccacgc ggcgattctt cgtgaatgga aatgccgcgc
      901 aaaaagatcg gcttgccgtt cagaaggatg tcggttccct ttgtctcaat actgcgaaac
      961 ccaatccggt cagttaccgc atcaccacct gaagctatct tgacatcgta gagtttgggc
     1021 gaagccggcg accacaaatc caggtttgct ttgaaactta ccggcgcata gccattcgca
     1081 tcagtactta ctgactgctt gatcttggct tcaggtattt cgatgtcgac agtttgattg
     1141 gcagcgttgc cgttgagctt tacccacccg gcaatttcat tcaacgaccc tttcttcagt
     1201 tgcagaaaat agtcctggac aaaagtgtcc gccacttcaa ccaactttac ttcgcgcgtt
     1261 agtccgccgt agttccacca gtctgtgttt agtgttggca ctgcgtctcg ccgtcgtttg
     1321 ttatcgactt tgacgacgag gaagttgtcc ttctccttaa caagcgaagt gatctcgaaa
     1381 ttaaatggag taaaaccacc ctcgtggcgt ccgagtttct gaccgttcag ataaacgtcg
     1441 gcgaggtagt ttgcgccgcc aaagtagaca aacaggcgag tgcgatcttt cttttgatag
     1501 ttgaaagact tcttgtacca gatagtgcct tcgtaaaaga gcaacttgtc gtcctgtgaa
     1561 ttccagtcgc caggaaccag tagttgctgt gaagaatcaa agtcatactc gactaagtcg
     1621 ctgggactcg ccggctttgt gttcttgaaa tagccgtcac cgcggggttc ataacgataa
     1681 tcgtagtagc cggtctcgta cggatcgatg atgatctgcc agcgtccgct caggcttgtc
     1741 gcctgacgtc cggcggtgtt gttaatcaat cccgctgact gttggccagc gatgctaagt
     1801 gcgagagtaa gaattaagac agagacgaat aacagtttgt taatgaccac gcggcctcca
     1861 ttcgagaaca ccaatcatct gtgctggaat atcttcaata ccttccgcct gaccctgacc
     1921 aacattttgt acgaataggt tgagttcctt cgcttttgcc aggctgtcac gtcatacgtt
     1981 ggctcccaca ttcccactga cgactctgtc aaatcgcgaa tcgtccagga atgtcccggt
     2041 aacatttcat tcgtggctaa taaccactca atttcgttcc ggcccgccga accgcgccgg
     2101 gagggttacg cacgacaatg ctatagacat gtcactccct accggagtga acctccttca
     2161 gaagtttcat cttgttatct gcttgtcacc ggacaagctg ggaagctccg tggtgacatc
     2221 tactgcagca acttactcaa ccacagagac acagagggca cagaggtaac acagagattt
     2281 tccaaattgg gatgcgccag ttttcgcgtc actcatgcca ggcgaactca cccgtccgac
     2341 tgttgtcgcg ttcattttac tgaacacttc gccattaagt tgaactggtg ttttcgaaag
     2401 tgggactgca aagtcccgca accgaaactt cgcgaggtct tgatttgttt tagatggacg
     2461 ctactaaatg tctcaggaat cccaatccga acgtaattgg gccgatattc atcaattctg
     2521 aactggatcg cgttaccctt cgtattcgga gacg
//
LOCUS       DATCGC010001323         1142 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_117876, whole genome shotgun sequence.
ACCESSION   DATCGC010001323 DATCGC010000000
VERSION     DATCGC010001323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1142
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117876"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..703
                     /locus_tag="VIJ87_12750"
     CDS             <1..703
                     /locus_tag="VIJ87_12750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445308.1"
                     /translation="PIFPVNGGVRQINVLTNYGIADYDGLQTMFSYRGNSRMFASVSY
                     TLSRATNTTEPDGNGIGPNQSVLLHLGGEERGPSVVDQRHRAVMTFSYRFPYNITAGT
                     VTMLASARPFNATTGVDNNGDGINNDRPVINGVVISKSAFRGTATSDVATFVEGRIRT
                     SERTSILLRLEGFNLLNHGNYLARGVTTYGDAATPANTFGQFVGGVGTTTNAIPAFAN
                     IDPPRVFQLQARFIF"
BASE COUNT          300 a          289 c          294 g          259 t
ORIGIN      
        1 tccaatattc ccggttaacg gcggtgtgcg tcagattaat gtactcacca actacggcat
       61 cgccgactac gatggcttac agactatgtt tagctatcga ggaaattcgc ggatgttcgc
      121 ttcagtaagc tacacgctgt cgcgagcaac caacacgacg gagccagacg gcaatggtat
      181 tggcccaaat caaagcgtac tgctgcacct gggtggcgag gaacgtggac cgagtgttgt
      241 cgatcaacgt catcgtgcgg tgatgacttt cagctaccgc ttcccataca acatcacagc
      301 gggaacggtg accatgctcg cgtccgcgcg tccattcaat gcgacgactg gcgtcgacaa
      361 taacggcgac ggaattaaca acgaccgacc tgtaattaat ggcgtcgtaa tcagcaagtc
      421 cgcattccgc ggcacggcaa cttctgatgt cgcaaccttc gttgaaggcc gcattcggac
      481 gtcagaacgc acaagcattt tgctacggtt ggaaggcttc aatcttctaa accatggcaa
      541 ctatcttgct cgtggtgtca cgacttatgg tgatgcggca actccagcca ataccttcgg
      601 acagtttgta ggtggcgtgg gaacaacaac gaacgctatc ccggcattcg caaacatcga
      661 cccgccgcga gtgttccaac tccaggcgcg gtttattttc taagtggctt ggaagtggca
      721 cagacttcat tctgtgtact agaaacaaaa ggggacttcg agttaatcga agtcccctta
      781 actatgtccg atatgcttta gcttgtcgca aagtaacgaa gaaggctgag cacgccgatg
      841 acgacaagct aaagagccac ttgcaaaagt ggagctgtga tcagattgga gctatgtgca
      901 gaaaggctct cattctcccc aagcttcagc ttggggtata agtgggctcg cagtactcag
      961 gaaccgtttc aacggtttac ccagtgtgca tatcaataag aacgccaatc gaacttcggc
     1021 gtggagtttg atggctcaaa accgtaaacc gttaaaacgg ttcgtcaaaa ttggagccct
     1081 gccgtaaacc ccaagctgaa gcttggggag aatgagagtt tgcaagaggc tctaaagcat
     1141 at
//
LOCUS       DATCGC010001324         1094 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_285204, whole genome shotgun sequence.
ACCESSION   DATCGC010001324 DATCGC010000000
VERSION     DATCGC010001324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1094)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1094)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1094
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285204"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..274)
                     /locus_tag="VIJ87_12755"
     CDS             complement(<1..274)
                     /locus_tag="VIJ87_12755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445309.1"
                     /translation="MSKNKDIEKKLEKEIEKKLEKEFRKDKLEKTELKEKREIKEIKE
                     FKEGKEIKEFKEKPERKEFKEPIKEKVEHKEIKEFEKQVPEKGGKEL"
     gene            complement(802..>1094)
                     /locus_tag="VIJ87_12760"
     CDS             complement(802..>1094)
                     /locus_tag="VIJ87_12760"
                     /inference="COORDINATES: protein motif:HMM:NF012694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEY5445310.1"
                     /translation="QGVERGESFVDPLKATEVFPNMVAQMIGIGEQTGALDAMLGKIA
                     DFYEQEVDSAIANLLTLIEPLLIGFLGVTIGSIVIAMYLPLFTLIGKLSQGH"
BASE COUNT          237 a          262 c          274 g          321 t
ORIGIN      
        1 cgagttcctt tccacccttt tcaggtacct gtttctcgaa ctctttgatc tccttatgtt
       61 caaccttctc cttgatcggt tctttaaact cttttcgttc tggcttctcc ttgaattcct
      121 tgatctcctt cccctccttg aactccttga tttccttgat ctcccgtttc tcctttagtt
      181 cagtcttttc gagtttgtct ttcctgaact ccttctcgag cttcttttcg atctctttct
      241 caagcttctt ttctatgtct ttgttcttac tcatgaacta gctccttgat ggttgtgatt
      301 agaggttcaa ggtctgaaga ggcgaggtct caaagctgct cgggcaagag cagggggttg
      361 cattgatgac aagtcaaacc acattgcgtt atttgagcgg ccaactttta gcaccacgac
      421 gacagcaatt agagctgccc gattggggaa gctaggttgg gtggcggtca gtcagaaacg
      481 gatcttgtcg ggtgacaaca ttgtggagtt ccgttctgat aatccaccta gctggcatct
      541 caggttgtgc agaggtggca atggttgtgc cgtttcgaga aagatgattt tgctgcgttt
      601 ttctgaggcc cggtcttgaa aggagatgag tatgtctacg acgggtaact aggacaggcg
      661 acgattgtga acactcagcg tggagcgacg ttaaggcggc cttaaccggg aacgagatag
      721 gacttctgac acgcagtcga aagagcaaag caaaaagcct ggcgaaagcc aggcttcttg
      781 gttacgaggt tgaagttgtg attagtgacc ttgtgacagt ttgccgatga gggtgaacag
      841 cggcaggtac atcgcgatta cgattgaacc aatcgtgacg ccaaggaaac cgatcagcaa
      901 aggttcaatc aaggtcagca ggtttgcgat ggccgagtcg acttcctgtt cgtagaaatc
      961 agcaatcttg ccaagcatcg cgtcgagtgc gcccgtctgt tcgccgatac caatcatctg
     1021 cgcaaccatg tttggaaaca cttcggtggc cttcaatgga tctacaaagc tttcgccgcg
     1081 ttcgacacct tgtc
//
LOCUS       DATCGC010001325         1008 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_87032, whole genome shotgun sequence.
ACCESSION   DATCGC010001325 DATCGC010000000
VERSION     DATCGC010001325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1008
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87032"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(212..604)
                     /locus_tag="VIJ87_12765"
     CDS             complement(212..604)
                     /locus_tag="VIJ87_12765"
                     /inference="COORDINATES: protein motif:HMM:NF018508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YkvA family protein"
                     /protein_id="HEY5445311.1"
                     /translation="MSTQPPRGFAQAQSQAESAARDKNKTKQLLHDALNKAYRNRAQL
                     KSVWEDLMAVCRMLKAWSKGDYQSVPWKTIVLSLATIIYFLNPFDVAPDFIPGIGYLD
                     DAVVLGFVVNSIKKELDKFLLWESEAGI"
     gene            complement(613..>1008)
                     /locus_tag="VIJ87_12770"
     CDS             complement(613..>1008)
                     /locus_tag="VIJ87_12770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445312.1"
                     /translation="LLVSDGKGNRGERERAFEELKNCGATLLALGIGVTSKLAHGPVL
                     LTRWVRETGGQLVFFSSENELKKNLRTAMDAVRNQYSAAYVPTNRTRDGSFRRLKVEI
                     TPQSPLTSRQVVIQGPDGYFAPLESSQQR"
BASE COUNT          226 a          263 c          287 g          232 t
ORIGIN      
        1 agcttcaaga tcttttgtcc ggagagttca aagagtctgt cgagctgagg tttcaggctc
       61 gacgaagtga gagttggatc gatctgtatc atcagttcct caacgtctta agcttgaaat
      121 aacaatggcg aggtgcttcc aggttcagag gttcgggtca ggctctacag tggcggtgtc
      181 gagggagagg tgcggagact cggcaggaaa atcaaatgcc cgcttcgctc tcccagagaa
      241 gaaatttgtc caactccttc ttgatcgagt tgacaacgaa gcccaaaacc accgcatcat
      301 ccaggtagcc tatgccggga atgaaatcgg gcgcaacgtc aaatgggttc aggaaataga
      361 tgatggtggc caaggataag acgatcgttt tccagggaac tgattggtag tcacccttgg
      421 accaggcttt gagcatgcgg caaacagcca tcagatcttc ccaaacggat ttcaactggg
      481 cgcggttccg ataggccttg ttcaatgcat catgcaaaag ctgcttcgtc ttgttcttgt
      541 cacgcgcagc cgactcggcc tggctctgag cttgggcgaa tccgcgcggt ggctgagtgg
      601 acatcggttc tcctagcgtt gttgtgaact ctccaagggg gcaaagtatc catcaggccc
      661 ttgtatgact acctgccgtg acgttagggg tgactgaggg gtaatctcga ccttgagacg
      721 tcgaaagctg ccatcccggg tgcggttggt cgggacatag gctgccgagt actggttgcg
      781 cactgcatcc attgccgtgc gcagattctt tttcaattca ttctccgagg aaaagaacac
      841 aagttggcca ccggtttcac gaacccaacg ggtgagcagc acggggccgt gcgccagttt
      901 ggaggtgacg ccgatgccca aggccagcag tgtggcgcca cagttcttca actcttcaaa
      961 tgcccgctcc cgctccccac ggtttccctt gccatccgag accagcag
//
LOCUS       DATCGC010001326         1862 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_53407, whole genome shotgun sequence.
ACCESSION   DATCGC010001326 DATCGC010000000
VERSION     DATCGC010001326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1862)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1862)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1862
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53407"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1320
                     /gene="groL"
                     /locus_tag="VIJ87_12775"
     CDS             <1..1320
                     /gene="groL"
                     /locus_tag="VIJ87_12775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004211302.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEY5445313.1"
                     /translation="MDIKRGIDKGVEAIVGELKKMAKSTKDPNEIAQVGTVSANGDTT
                     IGNIIAEAMNKVGKDGVITVEESRTMDTSLEVVEGMQFDRGYLSPYFVTDPERMEAVL
                     ENPLILINEKKISSMKDLLPLLEQVAKMGKPMLIIAEDVEGEALATLVVNKLRGTLNI
                     AAVKAPGFGDRRKAMLEDIAILTGGKVISEDLGIKLENVKLEDLGKAKKITIDKDNTT
                     IVEGAGKQGDIEGRVKTLRAQIDETTSDYDREKLQERLAKLVGGVAVIKVGAATETEM
                     KEKKARVEDAMHATRAAVEEGIVPGGGVTLVRAAKALEKFQTSKDGEGDPDEQIGVNI
                     VRRALEEPLRQIVQNAGKEGAVVVERVRSEKNENVGFNAATEVFEDLVKAGVIDPAKV
                     TRTALQNAASIAGLMLTTEAMVSELPDDDKGSPAMPGGMGGMSGMGM"
     gene            1486..>1862
                     /locus_tag="VIJ87_12780"
     CDS             1486..>1862
                     /locus_tag="VIJ87_12780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445314.1"
                     /translation="MKPVKGPDHWIAAILVALALAFITSIPQLYLCYERGQKWSGSFA
                     TFDMDELAYSAYANALVDGRPRRNDPYNGTENQDFESLFSIQFLPPYVLSSVARMLNL
                     SVSTTFVLLLPLIVIFSALIIFKL"
BASE COUNT          490 a          475 c          505 g          392 t
ORIGIN      
        1 atggacatca agcgtggcat cgacaagggc gtcgaagcca tcgtcggcga gctgaagaag
       61 atggccaagt cgaccaagga tccgaacgag atcgcgcagg tcggcaccgt cagcgccaac
      121 ggcgacacca ccatcggcaa catcattgct gaagcgatga acaaagtcgg taaagacggt
      181 gttatcactg ttgaagagtc gcgcacgatg gacacttcgc tcgaagtagt cgagggaatg
      241 cagttcgacc gcggttatct cagcccctac ttcgttaccg atccagagcg aatggaagca
      301 gtattggaga atccactgat cctcatcaac gagaagaaga tcagctcgat gaaggatctg
      361 ctgccgttac tcgaacaggt tgcgaaaatg ggcaagccga tgttgatcat cgctgaagac
      421 gttgaaggtg aagcgctcgc aactttggtt gtgaacaaac ttcgcggcac gttgaacatc
      481 gcagcggtca aagcccctgg attcggcgat cgtcgcaaag caatgctcga agacatcgcg
      541 attctcactg gtggcaaagt catcagtgaa gacctgggaa tcaagctcga aaacgttaag
      601 cttgaggacc tcggcaaagc caagaagatc acgatagaca aagacaacac cacgatcgtc
      661 gaaggcgccg gcaagcaggg cgacatcgaa ggtcgcgtga agactcttcg tgctcaaatt
      721 gacgagacca catcagacta cgatcgcgaa aagctgcaag agcgcttggc gaaactcgtc
      781 ggtggcgttg ctgtcatcaa ggtcggtgcg gcaactgaga ccgagatgaa agaaaagaaa
      841 gctcgcgttg aagatgcaat gcacgcgacg cgcgcagcag ttgaggaagg aatcgttccg
      901 ggcggtggcg tcacattggt tcgtgccgca aaagccctcg aaaaattcca gacgagcaag
      961 gatggcgagg gtgatcctga cgagcagatc ggcgtgaaca ttgttcgccg cgctctcgaa
     1021 gagccacttc gtcagatcgt gcagaacgct ggcaaggaag gcgcagttgt tgtcgaacgc
     1081 gttcgttctg agaagaacga aaacgttggc tttaacgcag cgaccgaagt cttcgaagac
     1141 cttgtaaaag ctggtgtcat cgaccccgcc aaggtcacgc gcactgcact ccagaacgct
     1201 gcttcaatcg ccggcttgat gctgacgacc gaagcaatgg tttcggagtt gccagatgac
     1261 gacaagggta gccccgcaat gccaggtgga atgggcggca tgagcggcat gggcatgtaa
     1321 ggctttcggc cttaactgtc agaaacagcc tcgtctcacg acgaggctgt ttttttgtcc
     1381 gtaaatacag gatcccaaca cagtttgact gcgcatcact tcggttaaag tgtgtagtcg
     1441 ctgttctcct aactttctcg atgaagcgta gaaccgtcta ggaaaatgaa acccgttaaa
     1501 ggccctgatc attggattgc ggcaatacta gtagcattgg ctctcgcctt cattacttcg
     1561 attccgcagc tttatttgtg ttacgagcgc ggccaaaagt ggagcggatc attcgccact
     1621 tttgacatgg atgaactcgc ctattcagcg tatgcaaatg ctctcgtcga tggcagacca
     1681 agacgcaacg atccctacaa cggaacagaa aaccaggact tcgaaagcct cttttcaatt
     1741 cagtttctac cgccttatgt cttgtcgtcg gtcgccagga tgctaaacct gtccgtatca
     1801 accacatttg tcttgctgct accactgatc gttatcttct cagccctgat cattttcaaa
     1861 ct
//
LOCUS       DATCGC010001327         1539 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_384767, whole genome shotgun sequence.
ACCESSION   DATCGC010001327 DATCGC010000000
VERSION     DATCGC010001327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1539
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_384767"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..960)
                     /locus_tag="VIJ87_12785"
     CDS             complement(<1..960)
                     /locus_tag="VIJ87_12785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445315.1"
                     /translation="MKRYKVQWAYPLEVGSPTIHNNEASASGEVGYLLGTWIRRNLEH
                     FLSEGGEFEAPEHPEFFEGMQYLIPQIQQLIQAGKVWDAYDLWEDFYLRFENEFGRPL
                     YAKIGTVIVEGSPETGLKNKIPFIERTKIRPIEKYAEKGKITLAINRREDKMAAIVED
                     LLEVVSNKAQLKNIRITQEQFLKAIVASERALEGKFPYQDEESERQFLEAFREGILRR
                     LFPKDKGMGLGAMRSWLVQYADFGGASHAGRHTNEERAKQDAGDYLMRLVKHLGMHAS
                     SEAIAGRNRKYVKSATELVERMHYLLSDDMVWRAYLEYKEFEHK"
     gene            complement(947..>1539)
                     /locus_tag="VIJ87_12790"
     CDS             complement(947..>1539)
                     /locus_tag="VIJ87_12790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445316.1"
                     /translation="IAKVDTARHLAALASKFDEELPQYATVWGYERNFPGFIEDAQQM
                     LESLGVLLEDDEVWGAYDEWHRFMNRWEDVLPTPLWVLIGTVIVDGPGPTVTPKYHPA
                     ESLARSMDRGKQMDWQWNFLKTLHETWRTIATEVNQRFVDSGAQPPPFAEIMNTVMTI
                     SKSYDEEVKDPKNIEHWYRLTRRDTFHHFGFTHETL"
BASE COUNT          304 a          437 c          400 g          398 t
ORIGIN      
        1 tttatgttcg aactctttgt attcgagata ggctctccag accatgtcat cggaaagcag
       61 ataatgcatt cgctcgacca gttccgtagc ggacttcacg tatttgcgat tacgtcccgc
      121 aatggcctcg ctgctcgcat gcatgccgag atgtttgacc aatcgcatca aatagtcccc
      181 ggcgtcttgc ttggcacgct cctcgttcgt atgacgcccc gcatgggagg ccccgccgaa
      241 atcggcatac tgaacaagcc agctcctcat ggcgccgaga cccataccct tgtccttggg
      301 gaatagccgt ctgagaatcc cttctctgaa ggcctcgagg aattgccttt cggactcttc
      361 gtcctgataa gggaacttcc cttccagcgc tctttcagac gccacgattg ccttcaagaa
      421 ttgctcttgc gtgatccgga tgttcttcag ttgggcttta ttggagacga cctccaggag
      481 atcttctacg atcgcagcca tcttgtcttc acggcgattg atggcaagcg taatctttcc
      541 tttttcagca tatttctcaa tgggacgaat cttcgtgcgt tcgatgaacg gaatcttgtt
      601 ttttaggccg gtttctggag agccctcgac aatcactgtg ccgatttttg cgtagagtgg
      661 ccgcccgaac tcattttcga agcgaaggta gaagtcctcc caaagatcgt aggcatccca
      721 aaccttccct gcctggataa gctgctgtat ctgagggatc aggtattgca tcccctcgaa
      781 gaattcagga tgctcaggag cctcgaattc gccgccttcc gaaagaaagt gctccagatt
      841 tctcctgatc catgtaccga gcaggtatcc cacttcgccc gacgcgctcg cctcgttgtt
      901 gtggatggta ggcgagccga cttccagggg ataggcccat tggaccttat agcgtttcat
      961 gggtgaaccc aaaatggtga aaggtgtccc gcctggtcaa ccgataccag tgttcgatgt
     1021 tcttcgggtc tttcacttcc tcgtcgtagc tcttggagat cgtcatcacc gtattcatga
     1081 tctcggcgaa gggcggaggc tgggcgccgc tgtctacgaa cctctggttg acctccgtag
     1141 cgatcgtcct ccaggtctcg tgcagcgtct tgaggaaatt ccactgccag tccatctgtt
     1201 tcccgcgatc catgcttcgt gccaagcttt cggctgggtg gtacttgggt gtcacggtgg
     1261 gccctggtcc gtccacgatg accgttccga tcaggaccca gagcggcgtt ggaagaacgt
     1321 cttcccaacg attcatgaac cgatgccatt cgtcgtaggc gccccagact tcatcgtcct
     1381 cgaggaggac gcccagggat tcgagcatct gctgggcatc ctcgatgaat ccagggaagt
     1441 tccgttcata gccccagacg gtcgcatatt ggggcaactc ttcatcgaat ttcgatgcaa
     1501 gagcggcaag atgccgggca gtgtcgactt tggcgatct
//
LOCUS       DATCGC010001328         1801 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_417164, whole genome shotgun sequence.
ACCESSION   DATCGC010001328 DATCGC010000000
VERSION     DATCGC010001328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1801)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1801)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1801
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_417164"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..298
                     /locus_tag="VIJ87_12795"
     CDS             <1..298
                     /locus_tag="VIJ87_12795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445317.1"
                     /translation="DMSLRDQPSRVHIFDHSLEFVNARRSLGFSPVAQKAIRYGIPQQ
                     LNPQLAAMLKSPAYGLKLTLRGLPQLLSESRRFSNRKAEIVAFNDEFRLRVYGA"
     gene            complement(468..1721)
                     /locus_tag="VIJ87_12800"
     CDS             complement(468..1721)
                     /locus_tag="VIJ87_12800"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY5445318.1"
                     /translation="MKYYRSYPYLSLVLVALLLSGSNTTLVRSQSRRQPPTSNEKKNK
                     RPDETKDGEKKQNEPLPPDIVPTKPQDIDRLAITTQVVNVDAVVYHKKSGQIVTGLKK
                     PNFAILVDGVQQTITNFSTPEAPITVAMVLEYSKWTEELGLYGNGGYEPGVYEVIRPA
                     ATFLSQFIKPPDDYVTVVAFDIRPTPLTDFTNDPARINAVVNLLLRNQPAFRETNLFD
                     ALKFVLVGGRGDSVVLEDSKSSKSDYSGLVSVQGRRRAVILIASGIDTFSKINYGDAR
                     KVLQNSGIPVYIIGTANLFKKKYGDTLGATDGLLGQPGRMTFLQAENALNTFAKETGG
                     AYFPVTFPGEEPKVIASINALLRSQYSLGFNPGEAQDGKQHKITVRVDVDGDGTYDDK
                     EFVIQARQFYNSPKPGTVPAKQGGQ"
BASE COUNT          420 a          456 c          457 g          468 t
ORIGIN      
        1 cgatatgtcg ttacgtgatc aaccaagccg agtgcacatc tttgatcact cattggagtt
       61 tgttaatgca aggcgcagtc ttggtttttc accggtggcg cagaaggcaa ttcgttacgg
      121 tattcctcaa cagctgaatc ctcagcttgc tgcaatgctc aagagtccag cctatggttt
      181 gaaactcaca cttcgtggct tgccgcaact gctaagcgag tcccgccgat tttcaaaccg
      241 caaagccgaa atcgtggcgt tcaatgacga gtttcgatta cgcgtatacg gagcgtgaag
      301 gaacaggagc aggggcacga ggcaggatat tcctgaagta acttccaatt tttgatgtat
      361 cgcaagacta accggcgtaa gcgaaaaggg cagcgaataa tcgctgccct tcagtttgtg
      421 agcgcacggc tgttcctgcc tactgccact gccttctgcc gcctgttcta ctgtcccccc
      481 tgcttcgccg gcactgttcc cggctttggt gagttgtaga actgacgggc ctgaatcacg
      541 aattctttgt cgtcgtaagt gccgtcgcca tcaacatcga ctcttacagt aatcttgtgc
      601 tgtttaccat cctgcgcttc gccaggattg aagcccaagc tgtattgact tctcaaaagc
      661 gcgttaatgc tggcgatcac tttcggctct tcacctggga acgttacagg gaagtacgct
      721 ccaccagttt ccttcgcgaa tgtgttaaga gcgttctctg cttgtaggaa ggtcattcgt
      781 ccgggctgtc ccagcaaacc atccgtcgct cccaacgtgt cgccatactt cttcttgaac
      841 aggttggctg ttccaatgat gtaaacagga atacctgagt tctggaggac cttgcgcgca
      901 tcgccatagt tgatcttgct aaaggtatca ataccggagg caatcaaaat cacagcgcga
      961 cgacgtccct ggacggaaac caacccggaa tagtcagact tactactctt tgaatcttcg
     1021 agcacaacgg agtcgccccg accaccaacg agcacgaact tcaaagcgtc gaataagttg
     1081 gtttcacgaa atgccggctg atttcttagc aaaagattga cgaccgcgtt aattcgagcg
     1141 ggatcgtttg tgaagtcggt caacggcgtg gggcggatat cgaaagctac tactgttaca
     1201 taatcgtcgg gcggtttgat gaactgcgaa agaaaagtcg cagccggacg aatcacttca
     1261 tatacacccg gttcgtaccc gccgttacca taaagaccaa gctcctccgt ccacttgctg
     1321 tattcaagaa ccatcgcaac ggttatcgga gcttccggag ttgagaagtt ggtaatggtt
     1381 tgctggacgc cgtcaacgag gatcgcaaag tttggtttct tcagaccagt gacaatttgg
     1441 ccactcttct tgtgatagac gaccgcatca acgttcacta cctgggtcgt gatcgccaat
     1501 ctgtcgatgt cctgcggttt ggtcggcaca atgtcgggtg gaaggggttc gttctgtttc
     1561 ttttcgccat ccttggtttc atccggcctc ttgtttttct tttcgtttga ggtcggcggt
     1621 tggcgtcgcg attgtgagcg gacaagtgtg gtgttgctgc ccgacaaaag tagagcgaca
     1681 agaaccagac taagatatgg ataagatcga tagtatttca tagttgggaa ctccggaggt
     1741 gtgccccata tgctttagct aaagattgcg ataagacctg cgacacgcta aagcatatcg
     1801 a
//
LOCUS       DATCGC010001329         1734 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_485551, whole genome shotgun sequence.
ACCESSION   DATCGC010001329 DATCGC010000000
VERSION     DATCGC010001329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1734)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1734)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1734
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_485551"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            160..1578
                     /locus_tag="VIJ87_12805"
     CDS             160..1578
                     /locus_tag="VIJ87_12805"
                     /inference="COORDINATES: protein motif:HMM:NF019042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HEY5445319.1"
                     /translation="MLAKKSSLVRIGIILPLLLLPIQPLRAQTSGSNSESERLQKLER
                     AVEQLQKRNAELEKEVSSLKKQSTSEPGATGKRKTVVTYDGKSYVEKSVAVEQKPGIF
                     VTPRASEFKLVLGGYIQMNLEDGAVSAFEGRFGQTALKDRFRLRRARINLTGDFAENF
                     DFKVEGEFENSDGTSPSNRTDFSGTDIFVNYHQFPEANVKVGQWKAPFGLEQLTPDPT
                     LIIIERSLPTGAITPERQVGAQLWGKPFTNIWPAQKDLLTYYAGIFNGNGRNINNNDN
                     NNFMYVGRLELLPWQGKLLGQNSSLKLGGDVLNSRDDKGTNISQSLNLLVNSDGSLSP
                     FVLPGADERTAWSVDAWFNLGPFDLIGEYLQEKVDGRTVAGVPPGFADFTTNGFYVTA
                     AYFLIPKKLQAAVRWEQLNPGQKGNDGIHSITGGLNYYIHGDDLKLMANYIHTWSDFR
                     QANPEFGDDQFDEVIVRLQLMF"
BASE COUNT          460 a          444 c          469 g          361 t
ORIGIN      
        1 cggaccgaga aaacgagatt gcaaagcgta aagaacaatc tagaaagcta accattttac
       61 cgaccagacc gctggaggat cacacaagga ggaataacgc tagccggact tccggaggtt
      121 cttttcgagt gaggaaatta tcacgataag gagaaacaaa tgcttgcgaa aaaatcgtca
      181 ctagttcgga tcgggatcat ccttccgctg ttgctgctgc caattcaacc gctgcgggcc
      241 caaacctccg gcagcaactc cgagtccgag cgactacaga agttggagcg ggcagttgag
      301 caattgcaaa aacgaaacgc cgagttggaa aaagaagtca gtagtttgaa gaaacagagc
      361 acctctgaac ctggtgcgac gggcaaaagg aagacagtgg tgacttacga cggaaaatcg
      421 tacgttgaaa aaagcgtagc cgtagagcag aaacccggga ttttcgtcac tccgcgtgca
      481 tcggaattca agctggtgct tggcgggtac attcagatga acttggaaga cggagctgtc
      541 tccgccttcg aaggccgctt tggtcagacc gcgttgaaag accgttttcg cctgcggcgg
      601 gcgcgcatca atttaaccgg cgattttgcc gagaacttcg acttcaaggt tgagggcgag
      661 ttcgagaata gcgatggcac ctccccatcc aaccgcaccg acttttcggg aacggacatt
      721 ttcgttaact accatcagtt cccagaagcg aacgtcaagg ttggccaatg gaaagcgccc
      781 tttgggttgg agcaacttac tccagaccct accctgatca taatcgagcg cagtttacct
      841 accggggcca tcacgccgga gcggcaggtc ggcgcgcaac tgtggggaaa gccgtttacc
      901 aacatctggc ctgcgcagaa ggatctgctg acctattacg ccggcatctt caacggcaac
      961 ggacgcaaca ttaacaacaa cgacaacaat aactttatgt atgtcgggcg gctggagctt
     1021 ctgccgtggc aaggcaaact gctcggtcag aattccagtc tgaagcttgg cggtgacgtg
     1081 ctcaacagcc gcgatgacaa gggcacaaat atctcgcaat cgttgaacct attggtgaat
     1141 tccgacggtt ccctctcgcc cttcgtcctg ccgggcgcgg atgaaagaac ggcgtggagc
     1201 gtggacgcct ggttcaatct gggtccgttt gatttaatcg gtgaatacct tcaagagaaa
     1261 gtagacggtc gcaccgtggc cggggtgcct ccaggcttcg ccgacttcac aacgaacggg
     1321 ttctacgtaa cagcagctta cttcctgatc ccgaagaagc ttcaagccgc cgtcagatgg
     1381 gagcaattaa atccgggaca aaaaggcaac gatggcattc actccattac gggtggtctc
     1441 aactattaca tccacgggga tgatctaaag ctaatggcga attacattca cacctggtcg
     1501 gatttccgac aagcgaatcc ggagtttggc gatgatcaat tcgatgaggt tatcgtacgt
     1561 ctccagctga tgttctaacg caacactacc cagaatttat ggaacaaagc attcgcaacc
     1621 agcttccggg gagggtgaag agcatcgtct cgaacgaagt tctcagtgaa gtcatcgtcg
     1681 agacgggcat cggcgatgtc gcttccgtta tcacgacccg ttcggtagaa gaga
//
LOCUS       DATCGC010001330         1355 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_453343, whole genome shotgun sequence.
ACCESSION   DATCGC010001330 DATCGC010000000
VERSION     DATCGC010001330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1355
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_453343"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            229..1020
                     /locus_tag="VIJ87_12810"
     CDS             229..1020
                     /locus_tag="VIJ87_12810"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEY5445320.1"
                     /translation="MRWAKFAAVVFLWAFFFPFVVSVHLWISFLKLPNRWAVISRLTY
                     TFTFLLRTILNIDVKIDGDAEPILAPGTVIISNHLSYVDGLVLGSIFPAVFVSKREVK
                     KWPIIGLWVALCGTIFIDRQKKNQVQSLVVEMSKTLNQGVNIILFPEGRATNGDRMLP
                     FQTAPLAAPLRNHSIILPVTVRYMRLDDSPVSKENRDLICCYDEMDFVPHFWQLLSLH
                     RIEVMVTIRRKIDCAHYEDTSAGRKQLARDCYHRVSGEFVKCAQQ"
     gene            1160..1309
                     /locus_tag="VIJ87_12815"
     CDS             1160..1309
                     /locus_tag="VIJ87_12815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445321.1"
                     /translation="MMKYKGLRDWLSIIEQCGELTTLEDVDWNLEMGAVVDVLYREHP
                     PYHRR"
BASE COUNT          312 a          352 c          335 g          356 t
ORIGIN      
        1 tggtgatctg cttacaagaa tttgtggcat cagactggag aaaagtctcg tctgcgtcta
       61 cgaaagaaac acacgccgtt cgcggaaacg cgagttctgc cgcgctattt ttcccttcga
      121 ccatcgagct agcaaacttc cttgcatcgg cagccaaagg aaggtagatc cgcgcattgg
      181 caatgctccc aatctcttag cgctcgcgct gaaagcgtcg aacgaatcat gcgatgggct
      241 aagtttgctg ccgttgtttt tctctgggca ttcttcttcc ccttcgttgt ctccgtgcat
      301 ttatggatta gtttcctcaa actgcctaac cgctgggccg tcatcagtcg gctgacgtat
      361 accttcacct tcctcttgag aacaattctg aatatcgatg tcaaaatcga cggcgatgcg
      421 gaacccatcc tggctccggg cacggtgatc atcagcaatc atttgagcta tgtggatggt
      481 cttgtgttag gcagcatctt cccggcagtg ttcgtctcca aaagggaagt caaaaagtgg
      541 ccgataatcg gtctttgggt agccttgtgt ggtacgattt ttatcgaccg ccagaaaaag
      601 aaccaagtac agtcgctggt tgtcgaaatg agcaaaacac taaatcaagg agtaaatatt
      661 atcttgtttc cggaaggacg cgccaccaac ggcgatcgaa tgttgccgtt tcaaaccgcc
      721 ccactcgctg cgccgttgcg caatcactcg atcatcctac cggtaactgt ccgatatatg
      781 cgtctagacg atagtccagt ctcgaaggaa aaccgggact tgatctgctg ctacgacgag
      841 atggattttg tacctcattt ttggcaatta ctatcgcttc atcggattga agtaatggtc
      901 accattcggc gcaagatcga ttgtgcacac tacgaagata cctctgccgg ccggaagcaa
      961 ctcgcgcggg actgttatca tcgtgtttcg ggcgaatttg ttaagtgcgc gcaacaatga
     1021 ggctgccgtt gacccatgag tcgagacgag ctactcgaga ttctagctct gcggaccttt
     1081 tggttacgat ctccgcttca attgactacg gcttcttttc gtgcgtcgtt acagctgcgg
     1141 ctgatgccat ctaggaacta tgatgaaata taaaggtttg cgcgactggc tgtcgatcat
     1201 cgaacaatgc ggcgagctca ccacgcttga agacgtcgac tggaatctcg agatgggcgc
     1261 cgttgttgac gttctctatc gcgagcatcc accttaccac cggcgctgat cttcgaccga
     1321 ttaaagatca taagcccggc tatcgtgcgc tcttc
//
LOCUS       DATCGC010001331         1048 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_453364, whole genome shotgun sequence.
ACCESSION   DATCGC010001331 DATCGC010000000
VERSION     DATCGC010001331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1048)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1048)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1048
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_453364"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(151..>1048)
                     /locus_tag="VIJ87_12820"
     CDS             complement(151..>1048)
                     /locus_tag="VIJ87_12820"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF021134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 87 protein"
                     /protein_id="HEY5445322.1"
                     /translation="SQSLGIQFHKQELTRFRLVSLALVLNFVLADLENQAYDVLVLFF
                     LLIGLIGLTREQPLWSIIGFGLGAALKATPLLFFPYLLFRYGWKLFTLCVLCYLTLSL
                     LPDLFLSVEDGLTTYYGNWIRQVALQPFFAGDSGGMPRFWEGENNLNQSLRAFVYRIT
                     LRMHIQQSFIPVLYGGYGLCLVYMLWVFSRSSKLQNYVVLDGSLLVIGMLLLSPMSSK
                     SHFVVLMLPFMVITAYMMTDQRLRTGLIFASALSCALNNLTSQDVVGRPLAVMAGYWG
                     SVTLGTITLALAIGYLANIRQK"
BASE COUNT          299 a          262 c          254 g          233 t
ORIGIN      
        1 atcgtcaagt gcttgatctt cttggctatc aagggggtca gatgaaattc gaaacccgtc
       61 actcacccca agcatttttc tcatactaat caggcttctc cacgcgaccc cttttctatt
      121 ctcgaactcc ctttcaacaa agggggcctg tcatttctgc ctaatattcg ccaggtatcc
      181 aatggccagg gctagagtaa tcgtcccgag tgtgacgctt ccccagtagc ccgccatgac
      241 tgccagcgga cggccgacca catcttgcga cgtgagattg ttgagggcac agctcagggc
      301 tgaagcgaaa atcagccccg tacgcaatcg ctggtctgtc atcatgtatg ccgtgatgac
      361 catgaacggc aacatgagga ccacaaaatg ggatttgctg ctcattggcg aaaggagcaa
      421 cattccaatg acgagaagtg atccatccaa tacaacatag ttttggagct tgctggagcg
      481 agagaacacc catagcatgt ataccaagca cagaccatag cctccatata agaccggaat
      541 gaaagattgt tgaatatgca ttctaagtgt gatgcggtac acgaatgctc gcaatgactg
      601 atttaaatta ttctctcctt cccagaaccg cggcattcct ccagagtctc ctgcgaaaaa
      661 aggctgcagc gccacctgtc gaatccaatt tccataatag gtcgtcagac catcctccac
      721 gctcaagaaa aggtctggca gtagagagag cgtgagatag cacagcacac agagagtgaa
      781 gagtttccat ccgtatcgga ataggagata agggaaaaat aacaggggtg tggctttgag
      841 ggcagctccg aggccaaaac caattattga ccagagtggt tgttctctcg tcaacccaat
      901 cagacctata agtaggaaga acaagaccag cacgtcatag gcctgatttt ccaggtccgc
      961 caagacaaaa ttgagcacaa gtgcgaggga aaccagacgg aaacgggtga gttcctgttt
     1021 gtggaactgg atacctagcg attgagat
//
LOCUS       DATCGC010001332         3734 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_320646, whole genome shotgun sequence.
ACCESSION   DATCGC010001332 DATCGC010000000
VERSION     DATCGC010001332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3734)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3734)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3734
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_320646"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1122)
                     /locus_tag="VIJ87_12825"
     CDS             complement(<1..1122)
                     /locus_tag="VIJ87_12825"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HEY5445323.1"
                     /translation="MIDDIQSTRLPNGIVVLSEHMPGLRSVTAGIWVRRGSRHESAEL
                     NGICHFIEHSVFKGTQKRTARDIAVESDQLGGHLDAYTTHEMTGFAIKVADTGFSEAI
                     DLLTDLVSHPRFDQEDLEREQKVILEEMKMVEDTPDELLGELFNAAYFPNQPLGRPIE
                     GTKETVPTFDHKTTVGFHAREFSYPNLVIAAAGNVNHGRLLELVGRTFGGCDSSAAHP
                     PNPIITTNPRPAAPILIEHKNELEQVHLVIATPWPDALSEDRYAASLLASVMGGGTSS
                     RLWQKIREERGLAYSVGAGGSAFSDVGVFNVYAGTSPEQLDEVVDLSLEALREAVNTS
                     VSEEELRIAKEQAIASILLGLESSSARASTLARQEIIHGR"
     gene            1461..3215
                     /locus_tag="VIJ87_12830"
     CDS             1461..3215
                     /locus_tag="VIJ87_12830"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY5445324.1"
                     /translation="MRRALSLSLSLLVLTALAVDAQAVTPGKATMATITGTVRDNKGN
                     PLAGALVTLLREGAKQTSKEAMTDHHGNFIARVLPGRYGIRAIANGFAEVVFAAVEVR
                     PSQELVYRFNLEPIGYGNTLPEKRRDREDVKWTLRSAQSRRSIFQVQEGEDSTIKAVT
                     DDAAETASLETAPESTTQSSNTESRSKTHGVLETYYASSAYSAPYAGLNFAVSTPVGE
                     GFELIFSGQTGVGPDAPERFEATTRFRVGERHRVGVTGAGLRLGAPLWVNRPSNQPDV
                     LGQVSMRAIDEWIVRDGIVIVMGLDYSRFIGGGGAHSVTPRIGIQFDANARTRVRAAF
                     AAGGDEDGIQSVAAFENDQIVFRQQPIRPVAFVDGEAVLERSHRLEFGIERVLDNNSN
                     VEATAFFDTTSGRGVGLLSAPGSAFSGAAGDAFAGVANQQGSSRGIRLVYTRRLNRVW
                     TASAGYAFGRGQRLPANGFSDPSDLFENGLFQTAALQLGAGFRTGTQVRTVLRFSPQA
                     TVFAIDPFAGRLGVYDPSLSIQVTQDLPSFGLPVRAEAVLDARNLLDVQTNSDNREVI
                     TVVGNNRRSVRGGISVRF"
     gene            3505..>3734
                     /locus_tag="VIJ87_12835"
     CDS             3505..>3734
                     /locus_tag="VIJ87_12835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445325.1"
                     /translation="MKGSVITTRTWFLLIGAALLISAGVLNFRQRARHQTPPWDGVTW
                     VDTGQGVLAKSIERNSAGERAWLLPGDRLWAIS"
BASE COUNT          888 a          940 c         1011 g          895 t
ORIGIN      
        1 acggccatga atgatctcct ggcgcgctaa tgtgctggcg cgcgcgctcg atgattcaag
       61 tcccaaaaga atcgaagcaa tcgcctgttc cttcgcgatt cgaagttctt cttcactgac
      121 gctggtgttg accgcctcac gcaacgcttc cagggaaaga tcgacaactt cgtctagttg
      181 ttcaggagat gttccagcat acacattgaa gacaccgaca tcggaaaagg cactacctcc
      241 ggcacccacc gaatatgcga gtccgcgctc ttcacgaatc ttctgccaca gccggctcga
      301 agtgcccccg cccatcactg aagctaacaa gctggcagca taacgatcct cgctcaaggc
      361 gtccggccaa ggcgtggcga ttaccaggtg aacttgctca agctcgtttt tgtgttcaat
      421 cagaattggt gctgcgggtc gggggttagt ggtgataatc ggatttggcg gatgcgctgc
      481 actgctgtca caaccgccaa acgtccgacc aaccaactcg agtagacgtc catggttcac
      541 atttccagcc gctgcgatta ccaggttagg ataggaaaac tctcgggcgt gaaatccaac
      601 agtagttttg tgatcgaatg ttgggactgt ttccttagtg ccttcgatgg gtcggccaag
      661 tggttgattt gggaagtagg ctgcgttgaa gagctcgccc aacaactcgt ccggcgtgtc
      721 ctcgaccatc ttcatttctt cgaggatgac tttttgttcc ctttcgagat cttcctgatc
      781 aaaacgaggg tgggaaacaa ggtcggttag caagtcgatc gcttcagaaa acccggtgtc
      841 cgcaacctta atggcaaagc cagtcatctc atgggtcgta taagcatcga ggtggccacc
      901 gagttggtcg ctttcgactg caatatcccg agcggttctt ttttgagttc ctttgaaaac
      961 agagtgttcg atgaagtggc aaataccgtt gagctcggcc gactcgtgac gagacccacg
     1021 ccgaacccag atgccggcag tgaccgaacg aaggccgggc atgtgttccg agagaacaac
     1081 aatgccattg ggaagtctcg tagattgaat gtcgtctatc attcgttgga aaccagaaaa
     1141 gccttgaaaa acatgtagag gcaaggggag tgcatcctag cacggcccaa aagtcgcggc
     1201 aaaggcgccc cttaacacag aagtattctt gacatcgatt caggccctga cagagaataa
     1261 tccccagttt ttcgggggtt cgagaagtct cctcccataa ccgatgtgaa ctttgcaggt
     1321 ttgcggcatc aaacctcggg gaaacgggca attaccagga gacataaagc cgctttgatt
     1381 aggtcagacc gtcagataag tagttgctcc ccagctccac ctgcttccta ttgggagttc
     1441 gctcccggag gtccttctgc atgagaagag cattaagtct cagtttatct ctccttgtct
     1501 taactgcttt ggcagttgat gcgcaggccg ttacgccagg aaaagccacc atggcgacca
     1561 tcactgggac ggttcgagat aacaagggaa atccacttgc cggagcgctc gtgacgttgt
     1621 tgcgtgaagg tgcaaagcag acttcgaaag aggcaatgac cgatcaccac ggtaacttca
     1681 ttgccagggt ccttcccggt agatacggaa ttagggcaat cgcgaatgga tttgccgaag
     1741 tcgtttttgc ggctgtcgaa gtgcgtccgt cacaggaact agtctatcgt tttaatctgg
     1801 aaccaattgg atacggaaac acgctgcctg agaaacgtcg ggatcgtgaa gacgtaaagt
     1861 ggacgcttcg ctcagcacag agtcgtcgct caatcttcca ggtacaagaa ggcgaagatt
     1921 ccacaatcaa ggcagtaact gacgacgcag ccgaaactgc ctccttagaa accgcacccg
     1981 aatccactac tcagagttcc aacacagaat caagatccaa gacacacgga gttctcgaaa
     2041 cctactatgc cagctcggca tactcggcac cgtatgcagg gttgaacttt gccgtttcta
     2101 ctccggttgg agaaggattc gaattgatct tctcgggtca aactggagta ggacccgatg
     2161 cgccagagcg ttttgaagca acaacacgtt ttcgagtagg cgagcgtcat cgagttggag
     2221 ttaccggcgc gggactacga ctcggcgcgc cactatgggt caacaggcca agcaatcaac
     2281 cggacgtgct gggtcaggtc tcgatgcgcg caattgatga atggatagtt cgagacggca
     2341 tcgtcatcgt catggggctg gattattcaa ggttcatcgg tggcggtggc gctcattcgg
     2401 tcacgccgcg aatcggtatt cagtttgacg ccaatgcacg cactcgagtg agagccgcat
     2461 ttgctgcggg tggcgatgaa gacggaattc aaagtgtcgc agcttttgaa aacgatcaga
     2521 ttgttttccg gcagcaaccg attcggcctg tggctttcgt ggatggcgaa gccgtcctgg
     2581 aaagaagtca tcgacttgag tttggaatcg aaagagttct tgataacaat tcgaatgttg
     2641 aagcgacggc attcttcgat acaacttcag ggcgaggcgt tggtttgttg agtgcgcccg
     2701 gaagtgcgtt ttcaggagcc gctggtgacg cctttgcagg agttgcgaat caacagggtt
     2761 cttctcgtgg tatccgattg gtttacacgc gacgtttgaa tcgcgtgtgg accgcatccg
     2821 caggttacgc tttcgggcgt ggtcaacgat tacccgccaa tgggttttca gatccctcag
     2881 acctatttga aaatggtcta ttccaaacag ctgccttgca attgggtgct ggcttccgaa
     2941 ctggtacaca ggttcgaacc gtgttgcgtt tctcgcctca ggctacagtg tttgccatcg
     3001 atcctttcgc tggcagacta ggcgtctacg atccgtcgtt gagtatccag gtaacccagg
     3061 acttacccag ctttggttta ccagttcgag cggaggcggt cctagacgct cgtaatcttc
     3121 tcgatgttca aacaaactcg gacaacagag aagtcattac cgtagtcgga aacaatcgtc
     3181 ggtcggtgcg cggtggaatc tcggtcaggt tttgatggtg agcctgaagc gagcagtcct
     3241 cctgacactt cttctcaaac tgcactgctc tcttcaaccc gccaaccagt caaacactgt
     3301 ccaaattctc ggagaatccg aaaagtagga ttgctcactt gttgttgttg agctggtccg
     3361 atctcggtga ggtttttagt ttaggctttt tgcctttcca gaattcaaag tgagctgaga
     3421 tcgctgacgg gatgacggga acataccttg cctaaaacta gtggaatcga ccacttgtag
     3481 ttggacgaca aggattgaag aacggtgaag ggttcagtaa ttacaaccag gacttggttt
     3541 ctgctcattg gcgcagcact cttgatcagt gcgggcgtcc tgaactttcg tcaacgggca
     3601 agacaccaaa caccaccatg ggatggtgtc acctgggtcg acacgggcca aggcgtttta
     3661 gcgaagtcga tcgagcgaaa ttctgccggc gaaagagcat ggttgcttcc tggcgatcgg
     3721 ttatgggcaa tctc
//
LOCUS       DATCGC010001333         1405 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_251930, whole genome shotgun sequence.
ACCESSION   DATCGC010001333 DATCGC010000000
VERSION     DATCGC010001333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1405)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1405)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1405
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251930"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..424)
                     /locus_tag="VIJ87_12840"
     CDS             complement(<1..424)
                     /locus_tag="VIJ87_12840"
                     /inference="COORDINATES: protein motif:HMM:NF014525.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HEY5445326.1"
                     /translation="MSAMDTEKHEKRSSSTAVPYINVTPLIDVLLVLLIIFMVVTPLK
                     PSRFKADIPTQRDPNEDLSKLKPNPLTLVVSISPDLQIKLNADALGSVNDTTQLSQKL
                     LLTFQQRKEQRAYKVGMEARSDVKEDDRIEKTVFVKAPR"
     gene            complement(453..914)
                     /locus_tag="VIJ87_12845"
     CDS             complement(453..914)
                     /locus_tag="VIJ87_12845"
                     /inference="COORDINATES: protein motif:HMM:NF014525.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HEY5445327.1"
                     /translation="MGMSGGGGGGGVQSEINVTPMVDIMLVLLIIFMVVTPFLQQGIT
                     VALPKNMTNPDVDPNIIKESSVVISVPNDGEYYLGKKKVQKEELADKVDTMLKGIKNE
                     QDRIVYIKSGVGVSYGDVVTVINEVRKLGVDKIGLVADKKKGGAAAAKPTS"
     gene            complement(1005..>1405)
                     /locus_tag="VIJ87_12850"
     CDS             complement(1005..>1405)
                     /locus_tag="VIJ87_12850"
                     /inference="COORDINATES: protein motif:HMM:NF013760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEY5445328.1"
                     /translation="ASSDISGDEIDASKRALQRAIAIKTAEFKRGLSGLATIGSTAPF
                     VGLFGTVFGIINAFRGMKNAESAGIAAVAGGISEALFTTALGLLVAVPAVWLFNYFTG
                     KVDGFIVEMDNSASELVDYFIKNRTKQLKP"
BASE COUNT          315 a          402 c          322 g          366 t
ORIGIN      
        1 cccgcggagc tttcacgaaa accgtctttt cgatccggtc gtcttccttc acatcagagc
       61 gagcttccat acctacctta tacgcacgtt gctctttgcg ttgttggaag gttagcaaca
      121 gcttttgcga caactgcgtc gtgtcgttta cggaaccaag cgcatctgca ttcagcttga
      181 tctgaaggtc gggagagatt gaaacgacta aagtcaaagg gtttggcttt agcttactca
      241 ggtcttcgtt cggatcgcgt tgagtaggaa tatcggcctt aaagcggctg ggcttcaacg
      301 gtgtaacaac catgaagatg atcagcagca ccaacaacac gtcaatcaac ggggtgacgt
      361 taatgtacgg tacagcagta ctgctgcttc tcttctcatg tttctcagta tccattgcag
      421 acatctgctg gttctcctct gactatctcg ggttaggaag ttggctttgc agctgcggcg
      481 ccgcccttct tcttgtcggc aaccaggcca atcttatcga cccctagttt cctgacttcg
      541 ttgattacgg tcacaacatc gccgtagcta acacccacgc cgctcttaat gtagacgatt
      601 cgatcttgct cgttcttaat acccttcaac atcgtatcga ctttgtcagc cagttcttcc
      661 ttttgaacct ttttcttacc caggtagtat tcgccatcgt ttggaactga aatcacgact
      721 gacgactcct taataatatt cggatcgaca tccgggttag tcatgttctt cggcagcgcc
      781 acagtgatgc cctgctgcag gaacggcgtg accaccatga agatgatcag cagtaccaac
      841 atgatgtcga ccatcggcgt gacgttgatt tctgactgta cgccaccgcc accgcctcca
      901 cctgacattc ccataactac tttccctttc cagcgttcgg taatcgcttt cgcgcgatgc
      961 acgcatcgcg cgactcgccc caaatggttt cggcaactag aaccttacgg tttcaactgc
     1021 ttggttcggt tcttgatgaa gtagtcgacc aattccgacg ccgagttatc catctctaca
     1081 atgaaaccat cgaccttacc ggtgaagtag ttgaagagcc acaccgcagg caccgcgacc
     1141 agcaaaccga gtgcagttgt aaacaacgct tccgaaatac cgccggccac agccgcgata
     1201 cctgctgact ctgcgttctt cataccgcgg aatgcgttga tgatgccgaa caccgtacca
     1261 aacaatccca caaacggagc cgtggagccg atcgttgcca agcccgaaag cccgcgcttg
     1321 aactcggcag ttttgatggc gattgctctt tgtagcgcac gtttcgaagc gtcgatctcg
     1381 tcgcccgaga tatcgcttga ggctt
//
LOCUS       DATCGC010001334         1465 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_186632, whole genome shotgun sequence.
ACCESSION   DATCGC010001334 DATCGC010000000
VERSION     DATCGC010001334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1465)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1465)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1465
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186632"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(126..>1465)
                     /locus_tag="VIJ87_12855"
     CDS             complement(126..>1465)
                     /locus_tag="VIJ87_12855"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY5445329.1"
                     /translation="LTNPSADSSQLWCGTRGNGLLRIVLDPIVGPVVAELDSEQGLPS
                     QNVFAVLPQNETVLIGTNRGVARYEPGKFEPTLYATRVVSKRVHAPTELAAGLDLEYP
                     QNSLLLDVTAISSRTFPEQFQYAFTLVDSGGKMVKQRLSRESQFTMEGLKPGKYTVSA
                     RAFTKDLTVSQPLSFSFTVEKAPFPWTSTALAILLALALLALLWAILERRRIVATSAA
                     LVDANRELADARLNLANEAERERRRIARDLHDQTLADLRHLALLTDQIKPNGEQAQST
                     VLRGEIESISHEVRRICEDLSPSVLQNVGFAAALEFALSHAVQDAPVEKKFEYEFHCD
                     DSIEERSELAASVQMQIYRIVQEAVNNIWRHANATHVKMSVTANDAGDFFLQVEDNGC
                     SFDMQNRKADGRGLANMRARAGLIDAEISWSQRTVGGTVFTLTRKARATVEAS"
BASE COUNT          341 a          415 c          367 g          342 t
ORIGIN      
        1 tcctcgcctg caaacctggc cactaaggcg ttcagtctta acaagcaggc gaggacgcct
       61 gcggtcccag aagagcgagc ttttgttgtt tgaagtagct actaaaggga accgatctgt
      121 ttcaatcaac tagcttccac agtcgcgcgg gcttttctgg tcaaagtaaa gacagtgcca
      181 ccgactgttc gttggctcca tgatatctct gcatcgatca agccagcacg cgcgcgcatg
      241 tttgccagcc cacgtccatc ggcttttcgg ttctgcatat caaatgagca gccgttatct
      301 tcaacctgta ggaaaaagtc gccggcgtcg ttagccgtca cactcatctt cacgtgcgtc
      361 gcgttagcgt gtcgccagat attgttaacg gcttcctgga cgatgcgata gatctgcatt
      421 tgtacactcg cagcgagttc acttcgctct tctatcgagt cgtcacaatg aaactcatac
      481 tcgaatttct tttcgacagg cgcatcctgc acagcatgcg acaaggcaaa ctccagggcc
      541 gcggcaaagc ctacattttg tagaactgat gggctgaggt cctcacatat cctgcgcact
      601 tcatgcgaga ttgattcaat ctcaccacgc aacacagttg actgagcttg ttcaccattt
      661 ggtttgattt gatcagtcag caacgcgaga tgtcgaaggt ctgccagtgt ttgatcgtgc
      721 aggtcacgcg ctattcggcg acgctctcgt tcagcttcgt tcgccaggtt cagccgtgca
      781 tcggcgagtt cgcgatttgc gtcaacaagc gccgcactcg ttgcgacaat tcttcgtcgt
      841 tcgagaatgg cccaaagcaa agcaaggagc gccagcgcca aaagaatcgc gagggcggtc
      901 gaggtccagg gaaatggcgc cttctcgacg gtgaatgaaa acgacagagg ttgtgaaact
      961 gttaggtcct tcgtaaatgc tcgagccgag acagtgtatt tcccaggctt caaaccttcc
     1021 atcgtgaact gcgactcgcg cgacagcctc tgcttcacca ttttcccgcc gctgtcgaca
     1081 agcgtgaagg catactgaaa ctgctctgga aacgtgcgac tgctaatggc tgtcacgtcc
     1141 aacaacaaac tgttctgcgg atactcaaga tcgagacccg ccgccaactc agttggagcg
     1201 tgcacgcgct tgctgacaac gcgcgtcgca tacagcgtcg gctcaaactt acccggttca
     1261 tatcgagcca cgccgcgatt ggtgccgata agcaccgtct cgttctgagg cagcactgca
     1321 aaaacatttt gcgagggtag accctgttcc gaatccaact cagctacaac cggaccaact
     1381 atcggatcca gaacgattct cagcagtccg ttgccgcgag tgccacacca gagttgactc
     1441 gaatcggccg atggatttgt taaaa
//
LOCUS       DATCGC010001335         1122 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_485630, whole genome shotgun sequence.
ACCESSION   DATCGC010001335 DATCGC010000000
VERSION     DATCGC010001335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1122
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_485630"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..315)
                     /locus_tag="VIJ87_12860"
     CDS             complement(<1..315)
                     /locus_tag="VIJ87_12860"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY5445330.1"
                     /translation="MTRTRILIADDHKMFAQGLIGLLEDEFELVGTVPDGQTLLEEAA
                     RLKPDVILVDISMPVLNGLDAVRKLGPNTGAKIVFLTMHADSRLLAEAFRCGGDAYVL
                     KQS"
     gene            complement(312..>1122)
                     /locus_tag="VIJ87_12865"
     CDS             complement(312..>1122)
                     /locus_tag="VIJ87_12865"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEY5445331.1"
                     /translation="TLKIGDEDRHYEARLVSAEGENVLSMVRDITEERRAIEALRESE
                     KRLRQSTRQVRMLAAQLITAQESERRRISILLHDDVGQTIAALGLAISNIKRRLPFAS
                     EPVSSELDRVGGQIRDLTVQIRQLSHQLHPEILDHVGLVKALESYVLEFGNEEQITIN
                     YSAEVTTSPIRQEVAVCVYRTALEAIRNASKHSGATTANVTLKETDGFLELKVADSGH
                     GFDIELAKHGSGLGLVSSEERVRLLHGSLEIRSDSQSGTCVIARVPIARTS"
BASE COUNT          248 a          301 c          274 g          299 t
ORIGIN      
        1 ggactgcttg agtacgtatg catcgccacc acatcggaac gcctccgcta acaagcgtga
       61 atccgcgtgc atggttagaa acacaatctt ggccccagtg ttaggaccga gtttccttac
      121 tgcatctaag ccgtttaaga ctggcattga gatgtcgacc aggattacgt cgggcttgag
      181 ccgcgccgct tcttcgagta acgtttgccc atcaggcact gttcccacaa gttcaaattc
      241 atcttcgagt aaaccgatca acccctgggc aaacattttg tgatcgtcgg cgattaagat
      301 acgtgttcgt gtcatgatgt cctcgctatt ggaactcgag cgatcacgca cgtacccgat
      361 tgagaatctg agcgaatctc caaagagccg tggagtagtc gaactcgttc ttctgaactt
      421 actagtccaa gtccacttcc gtgcttggcc aactcgatgt cgaaaccatg tcccgagtcg
      481 gcgaccttta gttccagaaa tccgtccgtc tctttcaaag taacgtttgc agtggttgcg
      541 cccgaatgct tggacgcatt acgtatagcc tcaagcgcag ttcggtacac gcatactgcg
      601 acttcctgac gaattggtga cgtcgttacc tccgctgaat aattgatcgt gatctgctct
      661 tcgttaccga attcaaggac ataagactcc aacgccttga ccagcccgac gtgatccaaa
      721 atctctggat gcagttggtg tgaaagttgt cgaatctgaa cggtaaggtc ccgaatttga
      781 cctccgactc gatcgagttc ggaggaaact ggctcactcg caaagggaag gcggcgcttg
      841 atgttgctga tagccaggcc caacgcggca atggtttgac caacgtcgtc gtgcagtagg
      901 attgagatcc ttcttcgctc ggattcctgg gctgtaatga gttgtgccgc taacattcga
      961 acttgccggg tgctttgtcg aagtctcttc tcgctctctc ttagggcttc aattgctcga
     1021 cgctcctcgg ttatatctcg aaccatgctc aaaacatttt cgccttctgc gcttacaagt
     1081 cgtgcctcat agtggcggtc ttcgtcacca attttgagcg tg
//
LOCUS       DATCGC010001336         1341 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_485633, whole genome shotgun sequence.
ACCESSION   DATCGC010001336 DATCGC010000000
VERSION     DATCGC010001336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1341)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1341)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1341
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_485633"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            89..286
                     /locus_tag="VIJ87_12870"
     CDS             89..286
                     /locus_tag="VIJ87_12870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445332.1"
                     /translation="MGEKTGTFGSVTYDGSEITIDIDPDSLGSLALTARDGRIECYWD
                     GNQWVCQALTFGSGESQATST"
     gene            complement(336..>1341)
                     /locus_tag="VIJ87_12875"
     CDS             complement(336..>1341)
                     /locus_tag="VIJ87_12875"
                     /inference="COORDINATES: protein motif:HMM:NF013123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DPP IV N-terminal domain-containing protein"
                     /protein_id="HEY5445333.1"
                     /translation="AAQEKPPPQSTAQIWFINYPEGEARTVTKDADYYQGMSLTADAN
                     SLITTRTRQSSKIWIASISPSKNVEELPASKNKGSGGLVWTPEGGLVYASNETGSMEI
                     WTTKVNGSDAKQLTFDNHTCVEPAISQRDHKFIVFASYVSGKPHIWRIDKNGNDPRQL
                     TSGLYEDWPDVSPDGKWVIYHASDTAGDRIWKISIEGGSPSLLSDKAARHPVFSPDGN
                     LIACYLREEGAAWELAVLPVAGGQPVKTFSIPATVADQWVGPRWTTDSKAITYVLTKG
                     GISNIWNQPISGEAATQRTNFDQDQIFAFTWSPDGKNLALVRGVNAKSVILMKGLGGK
                     "
BASE COUNT          300 a          342 c          344 g          355 t
ORIGIN      
        1 ttagccttct cactttgcgg aagttggatt tgcaacatct aaagaaccct tacaagttca
       61 gtgatctaat gatggaagga gcaaacttat gggagagaag accggaacct ttggcagcgt
      121 cacttacgat ggcagcgaaa taaccataga catcgacccc gatagtttgg gtagtcttgc
      181 gcttaccgcc agagatggac ggattgagtg ttattgggac ggcaaccaat gggtctgcca
      241 ggctcttact ttcggcagcg gtgagagtca ggcgacctcg acctaagaat tgtctcctcg
      301 ggccggcggc ggtcaatgaa aggaggggta gtctgttatt taccacctaa ccccttcatc
      361 aagatcacac tcttcgcgtt cactccccga accagggcca gattctttcc gtccggtgac
      421 catgtaaagg cgaagatttg atcctggtca aagtttgttc gttgcgtcgc cgcttcccca
      481 ctgatcggtt ggttccagat attcgaaatg ccgcccttgg tgagaacata tgttatcgcc
      541 ttgctgtcag tggtccagcg tggtccaacc cactgatcag cgaccgttgc gggaatggaa
      601 aacgttttta ccggttggcc tccggcgact ggaagaactg ccaattccca ggcagcgcct
      661 tcttcacgca gataacacgc tattaggttg ccatcaggtg aaaaaactgg atggcgcgct
      721 gctttgtcag acagcagcga gggtgatcct ccctcgattg agattttcca aatgcgatca
      781 cctgcagtgt ccgaagcatg gtagatcacc cacttgccat caggtgagac atcgggccag
      841 tcttcgtata gcccgctagt caattgtctt ggatcattgc cattcttatc gattcgccaa
      901 atgtgcggtt tgcctgagac gtagctggcg aaaactatga acttatgatc tcgttgagaa
      961 atcgctggct cgacgcaagt atggttatcg aaagttaatt gcttcgcatc acttccgttc
     1021 accttcgtgg tccaaatttc cattgagccg gtttcattcg aggcatagac gaggcctccc
     1081 tccggtgtcc ataccagacc gcccgaaccc ttgttcttac tggcaggcaa ctcctcgaca
     1141 ttttttgagg gtgagataga agcaatccag attttggagc tttgcctggt ccgtgtcgtg
     1201 atcaggctgt ttgcgtcggc tgttaaactc atcccctggt aataatcagc atcctttgta
     1261 actgtgcggg cttcaccttc gggatagtta ataaaccaga tctgcgcggt agattgtggc
     1321 ggtggttttt cctgcgcagc c
//
LOCUS       DATCGC010001337         1684 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_151527, whole genome shotgun sequence.
ACCESSION   DATCGC010001337 DATCGC010000000
VERSION     DATCGC010001337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1684)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1684)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1684
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151527"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1024)
                     /gene="trmFO"
                     /locus_tag="VIJ87_12880"
     CDS             complement(<1..1024)
                     /gene="trmFO"
                     /locus_tag="VIJ87_12880"
                     /inference="COORDINATES: protein motif:HMM:NF003739.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate--tRNA-(uracil(54)-
                     C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO"
                     /protein_id="HEY5445334.1"
                     /translation="MNEVVVIGGGLAGVEAAWQAARLGAKVRLYEMRPVKQTPAHRTD
                     KLAEIVCSNSLKSDEPGTASYLLKEELRRAGSLVLEVAAATRVPAGAALAVDRHTFSE
                     LITKRIEEAPNIELIRDEVTTVPESDIAVIATGPLTSEALTFEVMKLTGSDQLYFYDA
                     IAPIISADSIDTSIAFRAARYDKGGDDYLNCPFNKEQYAEFYAGLIEANSVPLQRFEE
                     TRWFEACLPIEELARRGVDTLRFGPMKPVGLRDPRTGREPYAAVQLRQENLMADAYSL
                     VGFQNHLRYGEQARVIRLIPGLQNAEFLQYGQIHRNTYICSPRVLQATMQMRERANVF
                     FAGQITG"
     gene            complement(1161..>1684)
                     /locus_tag="VIJ87_12885"
     CDS             complement(1161..>1684)
                     /locus_tag="VIJ87_12885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445335.1"
                     /translation="ERDAARRRAEQQKKNKEAGREENDDPEISQFLQVCEFVSPRRER
                     FGDRDTIVFDFRPRPGFKPSNRNESLIAKLVGAMWVDPVDKQVIRLEARLAEGFKMAG
                     GLLLSLKPGAAMIMEQTRMAGGVWLPRFAQINLSVKVLLFGGGDYNKTVEWSDYKHFS
                     GDVKDYKIEAPKP"
BASE COUNT          382 a          470 c          403 g          429 t
ORIGIN      
        1 caccagtgat ttggcccgcg aagaatacgt ttgcgcgctc ccgcatctgc atcgttgctt
       61 gtagtacacg aggagaacag atgtaggtat tccggtggat ttgtccatac tgtaggaact
      121 ccgcattttg caaccccgga atcagtcgta tcactctggc ttgttcgccg taacgtagat
      181 gattctgaaa gcccacaagg ctgtatgcgt cagccatcaa attttcttgc cgcaactgca
      241 ctgcggcgta tggctcgcga ccggttcgcg gatcgcgaag cccgaccggc ttcatcgggc
      301 caaaacgtag cgtgtcgaca ccgcgacgcg ccaattcctc gatgggaaga caggcttcaa
      361 accagcgcgt ttcttcgaac ctttgcaaag gaacactgtt ggcttcaatt agccccgcat
      421 aaaactcagc gtactgctcc ttgttaaatg gacaattgag ataatcgtcc cctcctttgt
      481 cataacgagc agcacgaaaa gcgattgaag tgtcgattga gtcggcggaa atgatgggtg
      541 cgatagcatc gtagaaatag agctggtcac tgccggtcag tttcatcact tcaaaggtca
      601 gcgcttctga tgtcagcggt cccgtggcga tgacggcgat gtcagattcg ggaacagtag
      661 ttacttcgtc acggatgagc tcgatgtttg gtgcctcttc aattcgtttg gttatcaact
      721 cggagaaggt gtggcggtca acggccaggg cggcgcctgc tggaacacga gtagctgcag
      781 cgacttcaag tacgagcgag ccggctcgtc gtaactcttc tttgagtaga taagaagctg
      841 tgcctggttc gtcagacttc agggagtttg agcaaacaat ttctgcgagc ttgtccgttc
      901 gatgagccgg cgtttgtttg acgggccgca tttcatatag gcgcaccttt gcccccaaac
      961 gagccgcctg ccaggcagct tccactccgg cgagacctcc accaattaca actacttcat
     1021 tcatgttttg atgtccgata agctttagct tgtcgtcgtg ctgacaacta gagcgccttc
     1081 aatcctcttg tctgtatcat tcgtctttat ctgtggctga cttctttcaa gttcacaaca
     1141 agctaaagca taacggacat tcacggtttc ggcgcttcga tcttgtagtc ttttacatct
     1201 cctgaaaagt gcttgtagtc gctccactca accgtcttgt tatagtctcc accaccgaat
     1261 aacaaaacct tcaccgacaa gttaatttgt gcaaagcgcg gcaaccaaac accgcccgcc
     1321 atacgtgttt gctccatgat cattgctgca ccaggcttaa gtgaaaggag caatccccca
     1381 gccattttga agccctccgc caaacgcgct tcaagtctga tcacctgctt gtccaccgga
     1441 tcgacccaca tcgcaccaac caacttagcg atcaagctct cgttccgatt gctcggtttg
     1501 aatccaggac gtggacggaa atcaaaaaca attgtgtcgc ggtcaccaaa cctctcgcgt
     1561 cgtggcgaaa caaattcgca cacctgtaag aactgcgaaa tctccgggtc gtcgttctct
     1621 tcccttcccg cttccttatt tttcttttgc tgctcagcac gccgacgcgc ggcatcgcgc
     1681 tcat
//
LOCUS       DATCGC010001338         1543 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_417359, whole genome shotgun sequence.
ACCESSION   DATCGC010001338 DATCGC010000000
VERSION     DATCGC010001338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1543
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_417359"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..277
                     /locus_tag="VIJ87_12890"
     CDS             <1..277
                     /locus_tag="VIJ87_12890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445336.1"
                     /translation="KAADEVVKIAVEKRKAEYRSDRAQEEMRNLIHNANLLDEKVGDY
                     KINSTFETATGTTSVEIKKSKTNFTLLIAGVGVVVLLLILIFVSLKT"
     gene            complement(287..1213)
                     /locus_tag="VIJ87_12895"
     CDS             complement(287..1213)
                     /locus_tag="VIJ87_12895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445337.1"
                     /translation="MRIATACSLALLLTIACASERKVQTRKPATPAAFAVDVTFHDSK
                     TSSTFTQSQFEQHVAQLKTKLPSSDFSIVVQPPFVVVGDEPAEVVKQHSEETIKWAVE
                     KLKQDFFPKDPADILDIWLFKDAASYEKHTRTIFNDKPSTPYGYYSRGHKALIMNIGT
                     GGGTLVHEIVHPFVEANFAACPSWLNEGLGSLYEQCGEKDGHIHGFVNWRLPGLQQAI
                     KAGSVPDFKTLTSLDTNAFYADGRGVNYAQSRYLCYYLQERELLVKFYQLFYAQQKND
                     PTGYKSLTSILGNPNMERFKKDWEKYVLTLAD"
     gene            complement(1303..>1543)
                     /locus_tag="VIJ87_12900"
     CDS             complement(1303..>1543)
                     /locus_tag="VIJ87_12900"
                     /inference="COORDINATES: protein motif:HMM:NF014724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HEY5445338.1"
                     /translation="HTTYENVVNAKQLADANNLKKLLIVSDPMHMKRAMTMAADVGLD
                     AHPSPTPTTKYKSLRAQMGELARETVYYLGYLLGR"
BASE COUNT          375 a          339 c          426 g          403 t
ORIGIN      
        1 aaaggcggca gacgaagttg taaaaattgc tgtcgagaaa agaaaagctg aatacagaag
       61 cgacagggct caggaggaaa tgcgcaacct gattcacaac gcgaatctgc tagatgagaa
      121 agttggcgac tacaagatca acagcacgtt cgagactgcc actggcacga ccagcgtcga
      181 aatcaagaag tcgaaaacca acttcacttt actcatcgcg ggtgttggtg ttgtcgtgtt
      241 gttgttgatt ctgatatttg tgtctctgaa gacatgaaac tgttgactaa tcggctaagg
      301 tcaacacgta cttttcccaa tccttcttga accgttccat attcggattg cctaagatgc
      361 tggtgaggct tttgtagccg gtcgggtcat tcttttgctg cgcatagaag agttggtaaa
      421 actttacgag taattctcgc tcctgcaggt agtaacaaag atatcgagat tgtgcgtagt
      481 tgacgccgcg cccgtcggcg taaaacgcgt tggtgtctaa agaggtcagc gttttgaagt
      541 ctggaacact gccggctttg atggcctgtt gtaatcctgg caagcgccag tttacgaaac
      601 cgtgaatgtg gccgtccttt tcgccacact gttcatataa agatcccagg ccttcattta
      661 gccatgatgg acaagcagcg aagttggctt cgacgaaggg gtggacaatt tcatgaacaa
      721 gggtgccgcc gccggttcca atattcatga ttagcgcttt gtggccgcgc gaatagtaac
      781 cgtagggagt tgatggcttg tcgttgaaga ttgtgcgcgt gtgcttttcg taagaggcgg
      841 catctttaaa tagccagatg tcgagaatgt ccgcaggatc ctttggaaag aaatcctgtt
      901 tgagtttctc aacagcccac ttgatcgttt cttcagagtg ttgcttcacc acctcggcag
      961 gctcgtcacc aacaaccacg aacggaggct gaacgacgat tgagaaatcg gacgatggaa
     1021 gcttcgtttt gagttgcgca acgtgttgct caaattgtga ctgcgtgaag gtcgagctgg
     1081 ttttggagtc gtgaaatgtg acgtcgacag caaaggctgc cggcgtggca ggtttgcggg
     1141 tttggacctt tcgctccgag gcacaggcga tcgtgagtag taaagcgagt gagcaagctg
     1201 tcgcaatacg catgtgattg aaacctcaag acgatagatg tgaaaagctc gacgctggtt
     1261 gctgatcgtg ccgaatggat aattccgagt tgcgagtttc cactaacgtc ccaggaggta
     1321 tcccaaatag taaaccgtct cgcgggcgag ttcgcccatc tgtgcgcgca gacttttata
     1381 cttcgttgtc ggcgtgggcg aaggatgggc atcgagacca acatcggccg ccatggtcat
     1441 tgcacgtttc atgtgcattg ggtcgcttac tatcaacagc tttttcaagt tgttggcatc
     1501 agcaagctgt tttgcgttga caacgttttc ataagtcgtg tgt
//
LOCUS       DATCGC010001339         1029 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_251996, whole genome shotgun sequence.
ACCESSION   DATCGC010001339 DATCGC010000000
VERSION     DATCGC010001339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1029
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251996"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..546
                     /locus_tag="VIJ87_12905"
     CDS             <1..546
                     /locus_tag="VIJ87_12905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445339.1"
                     /translation="LGWADAELGEVGRGVEQMQHGLSAYQATGTKIWYPVFLGSLADQ
                     LNKAQRVEEGLEVIAQALTCAAQTGEGYALAELHRIRGDLLLNHSGLLQAGKPPRDSS
                     TISILAEARASFSDALTIAKRQEARSWELRAALSLHRLDLMLGNQNPTHLAEIYSWFT
                     EGFETADLKSARTLLDSVPMA"
     gene            707..>1029
                     /locus_tag="VIJ87_12910"
     CDS             707..>1029
                     /locus_tag="VIJ87_12910"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEY5445340.1"
                     /translation="MQAEKEIAFGQFRLDLTNECLWRGTRAISLRPKAFAVLKLLIEN
                     PGQLVSKQKVLDTVWPGTFVGDAVLKDNIRQLREALDDDAGSPSYIETAHRRGYRFIG
                     KTSQRT"
BASE COUNT          253 a          247 c          299 g          230 t
ORIGIN      
        1 ctgggttggg ctgacgctga actcggtgaa gtcgggcgtg gggtcgaaca gatgcagcat
       61 ggcctctcag cgtaccaggc cacggggaca aaaatctggt atccggtctt tctgggttct
      121 ttggctgatc aactaaataa agcgcaacgg gtagaggaag gactggaggt gatcgcgcag
      181 gctttaacat gcgctgcgca aaccggagaa ggttatgcgc ttgcggagtt gcatcgcata
      241 cgaggtgatt tattgttgaa tcacagcggt ctactgcagg ctggcaaacc tccccgagat
      301 tcatccacaa tttcgatcct ggcggaagcg agggcgtcct ttagtgacgc cttgacaatc
      361 gcaaagcgac aagaagcaag atcgtgggaa ttgagagcag cattgagctt gcaccgtctt
      421 gatctgatgc tggggaacca aaaccccacg caccttgcag aaatatattc ctggtttact
      481 gaaggtttcg aaaccgcgga tctcaagagc gctagaacgt tgcttgattc agttccgatg
      541 gcataaaggc gttaagcatg gtagctgatg gtcggactgg ttggagagga cgcttttagt
      601 cacattgtga ctgtgcggac agaatgtttg gaacgtggtt cgtaccagcg atccacagca
      661 gaagcagtcg agtcgtcctg gcgcagtttg tgatgattac ccgaaaatgc aagccgagaa
      721 agagatcgcg ttcggacaat ttcgcctaga cctcaccaac gaatgtctct ggcggggcac
      781 gcgagcgatc tctttacgac caaaggcttt cgcagttctc aaactcttga tcgaaaatcc
      841 tgggcaactg gtcagcaagc aaaaggtgct ggacactgtc tggcctggca cttttgttgg
      901 cgacgcagtc ttgaaggaca atatccggca acttcgagag gcattggacg acgatgccgg
      961 ctcgcccagc tatattgaga ccgcacatcg ccgagggtat cgcttcatcg ggaagacttc
     1021 ccaacggac
//
LOCUS       DATCGC010001340         1082 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_87158, whole genome shotgun sequence.
ACCESSION   DATCGC010001340 DATCGC010000000
VERSION     DATCGC010001340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1082
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87158"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..882)
                     /locus_tag="VIJ87_12915"
     CDS             complement(<1..882)
                     /locus_tag="VIJ87_12915"
                     /inference="COORDINATES: protein motif:HMM:NF016274.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase family protein"
                     /protein_id="HEY5445341.1"
                     /translation="MSTPTRTTPAELGFEMPAEWHRHSATWLTWPKDPVTWPDRVPQV
                     QQIYIEMMAAITPHETVNLLVDDQATEDAVKQQCQFGSAKNIVFHQIVTVDSWIRDYG
                     PNFLIDQKGRLAFNDWRFNAWGDKYEELKKDDQIPSILESYLNVPRFEPGIVMEGGSI
                     EVNGNGCVLTTEQCLLNKNRNPHLNQKEIEQYLKDYLGVTTVLWLGEGIVGDDTDGHI
                     DDIARFVSEDIIVCAIEDDPTDANYDLLQDNLKRLKAMTDADEQSFEIVTLPMPGIVG
                     GTSTNTRNLDRLPASYAN"
     gene            complement(891..>1082)
                     /locus_tag="VIJ87_12920"
     CDS             complement(891..>1082)
                     /locus_tag="VIJ87_12920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445342.1"
                     /translation="LLLQLNKLNNGLVYSVVNAVGASLVILSLLTNFNFSAFLMEAFW
                     VLISIVGIVRHLRSKPIPS"
BASE COUNT          258 a          261 c          268 g          295 t
ORIGIN      
        1 gtttgcgtaa ctggctggta gtcggtccag atttcgagtg ttggtgctag tgccgccaac
       61 aatgccgggc atcggtagag tcacaatctc gaagctttgt tcgtcggcgt ccgtcatcgc
      121 tttcagtcgt ttgagattgt cctgaagaag gtcgtagttt gcgtccgtag gatcatcttc
      181 aatcgcgcaa acaataatgt cttcggaaac gaagcgagca atgtcgtcga tgtggccgtc
      241 agtgtcatcg cctactatcc cctcacccaa ccaaagaact gtcgttactc caagatagtc
      301 tttcaggtac tgctcgatct ctttctggtt gaggtgtgga ttgcggttct tgttaagcaa
      361 gcattgttcg gtggtgagca cgcagccatt tccgtttacc tcgattgagc cgccttccat
      421 tacgatcccc ggctcaaatc tcgggacgtt caaataactt tccaggatgc tcggaatctg
      481 gtcatccttc ttcagttcct catacttatc gccccatgca ttgaagcgcc agtcattgaa
      541 agccagacga cctttttgat cgatcagaaa gtttgggcca tagtctctga tccatgagtc
      601 gaccgtcacg atttgatgga agacaatatt ctttgcgctc ccgaactgac attgctgctt
      661 caccgcatct tcagtcgctt gatcgtctac caatagattt acagtttcgt gaggagtaat
      721 tgcggccatc atttctatgt aaatctgctg aacttgagga acgcgatcag gccacgtcac
      781 cggatccttt ggccacgtta gccaggtggc agaatgcctg tgccactccg ccggcatttc
      841 aaagccgagt tcggctggtg tggttctagt tggagttgac atcgaagaat ttaagaggga
      901 ataggtttgg atcgaaggtg cctgacaata ccgacgatac taataagcac ccaaaaggct
      961 tccataagaa aagctgaaaa attgaagtta gttagtagcg acaggattac caaactcgcg
     1021 ccaacggcat ttacgacaga atagacgagg ccattgttga gcttgtttag ctggagcagg
     1081 ag
//
LOCUS       DATCGC010001341         1084 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_186743, whole genome shotgun sequence.
ACCESSION   DATCGC010001341 DATCGC010000000
VERSION     DATCGC010001341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1084
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186743"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..802)
                     /locus_tag="VIJ87_12925"
     CDS             complement(<1..802)
                     /locus_tag="VIJ87_12925"
                     /inference="COORDINATES: protein motif:HMM:NF025217.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEY5445343.1"
                     /translation="MSTQKTDKELAFLYDLFIAPDWGERFAELIDKHVTLPKEGKVLY
                     LSAGTGGHALALHERSGGDKVEILCLDENEECVELARAKAIATKDPVQFQLARLDQLH
                     LPDNAYDFVIGNASLLTQQRAMRMFSEMVRVAAPGAQVAITLPTLSSFGEFFSIYWEA
                     LHNTGLIDHEADVEHLILDLPAVSDVEQLADDEGLTDVESWTNLEEFDFNSGEQFLNS
                     PLVAEFLMQNWLATLPEESRGLLMKELTSLINEERHEAEFALSVKATLV"
     gene            complement(815..>1084)
                     /locus_tag="VIJ87_12930"
     CDS             complement(815..>1084)
                     /locus_tag="VIJ87_12930"
                     /inference="COORDINATES: protein motif:HMM:NF023428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445344.1"
                     /translation="SQATIYLARAPKSNAIKNAYFAAALDAAETAREPVPMHLRNAAT
                     PLMKQVGYGKDYRYVHEDPAARDEMECLPEKLRGRNYFEPPTNEG"
BASE COUNT          247 a          288 c          264 g          285 t
ORIGIN      
        1 ccactaaagt cgctttcacg gagagagcaa attctgcctc atgcctctcc tcattgatta
       61 gactagttaa ttccttcatc aacaaacctc tcgactcctc tggtaaggtt gccagccagt
      121 tttgcatcaa gaattcggca accagcggag agttcaaaaa ctgctcgccc gagttgaagt
      181 cgaactcttc aagatttgtc cacgactcga cgtctgttag accctcatcg tcagcgagct
      241 gttctacatc ggagactgcc ggcagatcga gaattagatg ctccacgtca gcctcgtggt
      301 cgatcaaccc ggtgttgtgt aacgcctccc aataaatcga gaagaattca ccgaagctgg
      361 acagggtagg cagggttatt gcgacctgtg cacctggtgc cgccacgcgg accatttctg
      421 aaaacattct cattgcacgt tgttgagtga gcaatgaagc atttccgata acaaaatcat
      481 aagcgttgtc aggaaggtgg agctggtcta atcgtgcgag ttgaaactga actgggtctt
      541 tggtcgcaat ggctttcgcc cttgctagtt ctacacactc ctcgttctca tccaggcaga
      601 gaatttcaac cttgtcgccg ccgctgcgtt catgaagggc tagcgcgtga ccgccggtac
      661 cggcagaaag gtagagcacc ttcccctcct tcgggagtgt gacatgtttg tcgatcagct
      721 ctgcgaatcg ttcaccccag tctggcgcga tgaacaggtc gtataagaag gctaactctt
      781 tgtcggtttt ctgagtactc attgataggc agtcttaccc ctcgttcgtt ggtggttcaa
      841 aataattcct acctcgtagc ttttcaggta aacattccat ttcgtcacgc gctgcgggat
      901 cttcatgaac gtagcggtag tccttaccgt atcccacctg tttcattaaa ggcgtcgccg
      961 catttctcag atgcatgggc acgggttcac gagccgtctc agccgcgtcg agtgcagctg
     1021 cgaaatatgc attcttaatc gcattcgatt taggcgcccg cgcaagatag attgtcgctt
     1081 gaga
//
LOCUS       DATCGC010001342         1279 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_118176, whole genome shotgun sequence.
ACCESSION   DATCGC010001342 DATCGC010000000
VERSION     DATCGC010001342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1279)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1279)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1279
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118176"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1279
                     /locus_tag="VIJ87_12935"
     CDS             <1..>1279
                     /locus_tag="VIJ87_12935"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CRTAC1 family protein"
                     /protein_id="HEY5445345.1"
                     /translation="IQDDGAIVRISDQDDGQSWATAQITTLDDNSLYGTRDFQLQALD
                     LDNNGSNDLLLTFSNDASGKNAPGGIVWLSDAENKFSRLQNNNPPAGITVVCGAADVN
                     GDGRLDLLGVGQDGAPVQAINHGTKNYHWQVIRPRAAKAVGDQRINSFGVGGEMEIRA
                     GSLVQKQLITAPIVHFGLGDQTGADVVRIVWPNGAVRAEFETKADQTILAEQRLKGSC
                     PFLFAYNGKEMKFVKDAVPWSSAIGLRINTIGTARVEATEEWYKIRGDQLAPRDGYYD
                     LRITAELWETYYYDQLGLMVVDHPAGTDIFVDERFVIPPAKLEITTVATPHKIAHAWD
                     DNGKEVTEVVSSLDEKYLDTFGRGRYQGVTRDHYVEVDLGDNTSTGDPLYLIAQGWMH
                     PTDSSVNVAISQGNNDPARPLSLEIPDGKGGWIV"
BASE COUNT          321 a          307 c          360 g          291 t
ORIGIN      
        1 cattcaagac gatggagcga tcgttcgaat ctcggaccag gatgacggac aaagctgggc
       61 gaccgctcag atcacgacgc ttgacgacaa ttcgctttat ggcactcgag actttcaact
      121 tcaagctctc gacctcgata acaatggttc caacgatttg ttgctgactt tcagcaacga
      181 cgcctcgggc aagaacgctc ccggaggaat cgtctggtta agcgatgccg agaataaatt
      241 tagccgactg caaaacaaca atcctccagc tggaatcact gttgtttgcg gtgcagcaga
      301 cgttaacgga gatggtcggt tagatctgtt gggtgtaggc caggatggcg cacccgtcca
      361 ggcaatcaat cacggcacga agaattatca ctggcaggtg attcgacctc gcgcggcgaa
      421 ggctgttggc gatcagcgca ttaacagttt cggcgttggt ggtgagatgg aaattcgcgc
      481 cggctcgctg gtgcagaagc aactgataac cgctcccatt gttcacttcg gtttgggcga
      541 ccaaaccggc gcggatgtag tgcgaatcgt ttggccgaac ggtgccgtgc gcgcggagtt
      601 tgaaacgaag gctgatcaaa cgattcttgc ggagcagcgc ttgaaaggtt cgtgcccgtt
      661 cctgtttgct tataacggga aggaaatgaa gttcgttaaa gacgccgtgc cttggagttc
      721 tgctatcggt ttgcgaatca acacaattgg caccgcaaga gttgaggcga cagaagagtg
      781 gtacaagatc cgcggcgatc aacttgcccc gcgtgatggt tattacgact tacgaatcac
      841 tgcagagctc tgggaaactt attactacga tcagcttggt ctgatggtag ttgatcatcc
      901 ggcaggcacc gacatcttcg ttgatgaacg attcgtaatt ccaccagcca agttagagat
      961 aaccactgtt gcgacgccac acaagattgc tcacgcctgg gacgacaacg gcaaagaggt
     1021 aacggaagtt gttagtagtc ttgatgagaa gtatctcgac acctttggtc gcggtcgata
     1081 tcagggagta acgcgcgacc actacgttga agtcgacctg ggtgataata cttccactgg
     1141 cgatccactg tatctaatcg cgcagggctg gatgcatccg accgattctt cagtcaacgt
     1201 agcaatcagc cagggcaata atgatccagc aagaccactg agtctggaga taccggatgg
     1261 aaaaggtggt tggattgtg
//
LOCUS       DATCGC010001343         1569 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_186862, whole genome shotgun sequence.
ACCESSION   DATCGC010001343 DATCGC010000000
VERSION     DATCGC010001343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1569)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1569
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186862"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..234)
                     /locus_tag="VIJ87_12940"
     CDS             complement(<1..234)
                     /locus_tag="VIJ87_12940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445346.1"
                     /translation="MARWYLLVHGVRPAALEGREAFTTRSGERFYWVEDLLRRRGNGC
                     EYISGDLNGDWSRCNEPKVQLQYCAFHYRVCHLK"
     gene            complement(260..1468)
                     /locus_tag="VIJ87_12945"
     CDS             complement(260..1468)
                     /locus_tag="VIJ87_12945"
                     /inference="COORDINATES: protein motif:HMM:NF024547.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3987 domain-containing protein"
                     /protein_id="HEY5445347.1"
                     /translation="MATVVPLQQPRKNLCWITSFVNETEYLDSPQIFRKWAALTALSA
                     ALERKVFLKLTNRQLFPNLYTFLVGPPGIGKTTAIRFVRELLQTIPRLHLAPPKITKE
                     KFIQLLAGAMKLDQDIESMTHSSYSCLLDEVATFLNPGDNEFLTALTDFYDCPVHWEY
                     SLISRNPVNVEYAYVSILGGLTPRMLAEIFGQRSLGMGFTSRVLFVYSEDFVEVEPFP
                     DFEAPTFSSLAEDISKIHNLRGEFKLSTEAQAFARAWRKAKMVPFPSDSRFDEYLPRR
                     FMHWMKLSLIVSAGRRDSRLITIEDVEFTKALLLEAEETMPLALEHMGQNPMVEASYR
                     VLRWALVEYSTNGKQAIHEKHIRTKLLQGGISPQYLESTFQSMVTSGTFVLDSGTYPN
                     RHFRPVKTPS"
BASE COUNT          370 a          403 c          430 g          366 t
ORIGIN      
        1 ttttaaatga cataccctgt aatgaaaggc gcagtattgc aactgtacct tcggctcgtt
       61 acagcggctc cagtccccat tcaggtcgcc tgaaatgtac tcgcagccgt ttccacggcg
      121 ccgcagcaag tcttctaccc agtaaaaacg ttcaccggac cgggttgtga atgcttctcg
      181 gccttccagg gctgctgggc ggactccgtg gacgagaagg taccatctgg ccacgaagcc
      241 tatccccacg tttacccggt taacttgggg ttttaactgg tcggaaatgt ctgttagggt
      301 aggtgccaga gtcgaggacg aaggtgcccg aggtaaccat tgactggaac gtggactcca
      361 ggtactgtgg agatatgcct ccctggagga gcttcgtgcg tatatgcttc tcatggatgg
      421 cttgctttcc gtttgtgcta tactcgacta gcgcccagcg gagtacgcgg taactcgctt
      481 caaccatagg gttctgcccc atgtgttcga gtgcaagcgg catggtttct tcagcttcaa
      541 gaagcagtgc tttagtaaac tcgacatcct cgatcgttat aaggcggctg tctcgccggc
      601 cggcagagac gatcagtgag agcttcatcc agtgcatgaa gcgccggggg aggtactcgt
      661 caaaccggct gtcacttgga aaagggacca tcttggcttt acgccaggcc cgtgcgaaag
      721 cctgggcctc agtagagagc ttaaactcgc cccttaagtt atggattttg ctgatgtctt
      781 cggcaagcga actgaaagta ggggcctcaa agtcagggaa cggctcaact tcaacaaagt
      841 cctctgaata aacgaacaga accctagaag taaaacccat tccgagtgac cgctggccga
      901 aaatttcagc gagcatccgg ggcgtcagcc cgccaaggat actcacgtag gcatactcta
      961 cattcacagg gttccgactg ataagcgagt attcccagtg gactgggcag tcataaaagt
     1021 ccgtcagcgc ggtaagaaac tcattatcgc ctggattaag aaaggtcgct acctcatcta
     1081 acagacatga atacgaggaa tgcgtcatgg actcgatatc ttgatcgagc ttcatcgcgc
     1141 cggcaagcaa ctggatgaat ttctctttcg ttattttagg cggtgcaaga tgcaggcgtg
     1201 ggatcgtttg cagcagttct cggacgaagc ggatcgctgt cgtcttgccg ataccaggcg
     1261 ggccgaccaa gaaagtgtac aaatttggaa agagctgccg gttagttagc tttaggaaaa
     1321 ccttcctctc tagagccgca ctgagggctg ttagagcagc ccatttccgg aagatctgag
     1381 gcgagtctag gtactcagtc tcattaacga aggacgtaat ccagcagaga ttctttcgtg
     1441 gctgctggag cggtacgact gtcgccatcc ggtgtccact tctttaagcc agagaggttt
     1501 ggacgaactg gcaagccgct cttttcggac tcaaacgcgg catctgcctc ggacaggtaa
     1561 tgcgcccag
//
LOCUS       DATCGC010001344         1310 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_186870, whole genome shotgun sequence.
ACCESSION   DATCGC010001344 DATCGC010000000
VERSION     DATCGC010001344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1310)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1310)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1310
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186870"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..410
                     /locus_tag="VIJ87_12950"
     CDS             <1..410
                     /locus_tag="VIJ87_12950"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY5445348.1"
                     /translation="GTKTARKTSNIFQDAKAFPSFSVKDLKQAKTFYGETLGLEISEM
                     PEGLQLELAGNVNVFLYPKPNHTPASFTVLNFPVNDIDEAVEELIARGVRLEKYDQRD
                     IKTDQKGIMRGPGPNIAWFKDPAGNVLSVIQER"
     gene            584..>1310
                     /locus_tag="VIJ87_12955"
     CDS             584..>1310
                     /locus_tag="VIJ87_12955"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY5445349.1"
                     /translation="MTTTSNNMTGTEIVDLCRRHTLFEWSAQAAVDPIPVAHAKGIYF
                     WTPEGKRFIDFNSQLMCVNIGHGDERVINAIKEQASTLAYANPFMATEVRARLAAKLA
                     EITPGDIDAFFFTNGGAESVENAVRISRLFTGRHKIGARYRGYHGGTAGALTLTGDPR
                     RWAAEPGIPGVFRIPDFYHGIQKGFDTTEEVLSRTEEVLELEGVNTIAALIVEPVTGT
                     NGILIPPDGYLQGLRDLCDKYGIL"
BASE COUNT          327 a          352 c          338 g          293 t
ORIGIN      
        1 tgggaacaaa aacagcaagg aaaacttcaa acatatttca ggacgcgaaa gcctttccga
       61 gcttttcagt gaaagatttg aaacaagcca agacgttcta cggcgaaacg ctgggcttgg
      121 agatttctga aatgcctgaa ggattgcagc tggaacttgc tggcaacgta aacgtctttt
      181 tgtatccgaa accaaaccat actccggcat catttaccgt tctgaacttt ccggtgaacg
      241 acattgacga ggcagtcgaa gaattgattg cacgcggtgt tcgcctggaa aagtacgacc
      301 aacgtgacat caagactgat cagaaaggca tcatgcgcgg gccaggtccc aacatcgcat
      361 ggttcaaaga tccggccggg aatgtcttgt ctgtgatcca ggagcggtag gttcgacgga
      421 gtgatcagtg acggggtgag tgggtgacag cgatctcaaa ttgcagatct cagatctcag
      481 aactcaatcg cggagcgcat tctgagatct gaaatttgaa atctgagatc gctgtcgcgc
      541 gccactcgcc cgtcgcccac tctctcgcta tactctccca attatgacaa ccaccagcaa
      601 caatatgacc ggcaccgaaa tcgtcgacct ttgccggcgt catactctct tcgaatggtc
      661 ggcacaggca gcggtggatc cgattccagt ggcccacgca aaaggtatct atttctggac
      721 accggaaggt aaacgcttca tcgatttcaa tagccaactg atgtgcgtga atatcggcca
      781 cggtgatgaa cgcgtcatca atgcgatcaa agagcaggca tccacacttg cctatgccaa
      841 tccattcatg gctacggagg tgcgcgcacg tctcgccgct aagctcgcgg agattacgcc
      901 aggcgacatc gatgccttct tcttcacaaa cggcggcgct gaatctgttg agaatgcagt
      961 ccgcatctca cgcctcttta caggtcgtca caagatcggt gctcggtatc gcggttacca
     1021 cggcggcact gccggtgcgt taacgctgac cggtgatcca cgacgttggg ccgctgaacc
     1081 tggcattccc ggggtcttcc gtatccccga tttctatcac ggcattcaaa aagggtttga
     1141 tacaactgag gaagtcttgt cgcgcactga agaggtgctc gaactcgaag gcgtcaacac
     1201 aatcgccgcg ctgattgtag agcctgtcac cggaaccaac ggcattctca ttccgccgga
     1261 tggttatcta cagggactcc gagacctgtg tgacaagtac ggcatccttt
//
LOCUS       DATCGC010001345         1546 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_118261, whole genome shotgun sequence.
ACCESSION   DATCGC010001345 DATCGC010000000
VERSION     DATCGC010001345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1546)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1546)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1546
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118261"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..347)
                     /locus_tag="VIJ87_12960"
     CDS             complement(<1..347)
                     /locus_tag="VIJ87_12960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445350.1"
                     /translation="MKRWLTLRNAYRVAIIAAAVALVVLFAVDVFGRVGGGHSYSGGS
                     RGGGGGSRGGSGGGSGDGGAIVWLVFEALRLLVYLTINYPLIGIPLDIMLIVGVGFFL
                     RRRARSVTAGFSS"
     gene            complement(344..973)
                     /locus_tag="VIJ87_12965"
     CDS             complement(344..973)
                     /locus_tag="VIJ87_12965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445351.1"
                     /translation="MTRPRFDNAACDTLAGCVQEIERSTDAELIIVVRARSANYLHAD
                     YLFGFSLALVVLLFLVFSPFSFPEFLVPLDVAVAFVVGSIISWKSNAVRRLFSREKFR
                     KNAVRTAAAAMFYEAGIANTNAEMGVLIYLSLMERRLELIADRGVLKKVPAQDWNHQI
                     FELHQVGKEPDPEKFRSAIEQFGEVLATHVPATGENPNELPDKPRFELK"
     gene            complement(1144..>1546)
                     /locus_tag="VIJ87_12970"
     CDS             complement(1144..>1546)
                     /locus_tag="VIJ87_12970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445352.1"
                     /translation="GQAIVAVNNQRKTGNTNFFVLQKRQQKYRMSAQGVLDTKGFTRA
                     SWSTELVDADDDGYPEVVFSGKDSIESRTLRRLILFVPNENRTYSMVMNGATTGRGTP
                     RISWLSNAAGTDAAPYRAALRQKAKAIAAKK"
BASE COUNT          401 a          413 c          396 g          336 t
ORIGIN      
        1 atcgaggaga aaccggcggt aacgcttcgc gcacgccgcc ttaagaaaaa tccaacccca
       61 acgatgagca tgatatcgag cggaatgccg atgagcggat agttaattgt cagatagaca
      121 agtagacgaa gcgcttcgaa caccaaccac acaatggcgc caccatcgcc actaccgcct
      181 ccactaccac cgcgactgcc gccacctcct ccgcgactgc caccgctata cgaatgacca
      241 ccgccgaccc gtccaaagac atcgactgcg aacaggacca caagagcgac tgccgcggca
      301 atgattgcca cgcgataagc atttctgagt gtgagccaac gtttcatttc agttcaaagc
      361 ggggcttatc gggcagttcg tttggatttt caccagttgc cgggacgtgc gtcgccaaca
      421 cttctccaaa ctgttcgatg gcagatctga atttttcggg gtcgggttct ttgcctacct
      481 gatgaagttc gaagatttga tgattccagt cctgggctgg cacttttttc aaaacacctc
      541 ggtcggcaat taactcgagt cgtcgctcca tcaacgagag ataaattaga acgcccatct
      601 cagcattggt gttggcgatg ccggcttcgt aaaacatcgc ggcagccgcg gtgcgaacgg
      661 cattcttcct aaacttttct ctcgagaaga ggcgtcgcac ggcattgctc ttccaggaaa
      721 tgattgagcc aacaacgaag gcgaccgcga cgtcgagcgg aaccagaaac tcgggaaatg
      781 agaaaggtga aaagacaaga aacaacaaaa cgaccagggc cagtgagaac ccgaacaggt
      841 aatcagcgtg aaggtagttg gctgagcgag cacgaacgac gataatcagt tctgcgtcag
      901 tgctgcgttc gatttcctgg acgcagccag caagagtgtc gcaggcagcg ttgtcaaaac
      961 ggggacgagt cattagggat caaatggaaa cgggattcga gaccagagac tatcttggca
     1021 tgcgggaggc aaagttgtca gcagggaaga agtgacgagg aagactttgc tgttttccaa
     1081 gtgccgattg ccgattgaaa aaaccgttag tcagcaccga caaattggaa atcggcaatg
     1141 acttcatttc ttcgcagcga tcgctttcgc cttttggcgt agcgcagccc gatacggggc
     1201 agcatcggtt ccagctgcat tagaaagcca cgagatgcgt ggtgttccac gcccagtggt
     1261 tgcgccattc atcaccattg agtaagtccg attctcattc ggaacaaaca agatgagtcg
     1321 gcgaagtgtt cgactctcga tggaatcctt gccactaaaa actacttctg gataaccatc
     1381 atcgtcagca tcaaccaact ccgttgacca actcgctcga gtgaagcctt ttgtatcgag
     1441 caccccctgg gcgctcatcc gatacttctg ttgtcgtttt tgcaggacga agaagtttgt
     1501 gtttcctgtc ttcctctgat tattcaccgc gactatggcc tgccca
//
LOCUS       DATCGC010001346         1039 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_87248, whole genome shotgun sequence.
ACCESSION   DATCGC010001346 DATCGC010000000
VERSION     DATCGC010001346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1039)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1039)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1039
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87248"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..946
                     /locus_tag="VIJ87_12975"
     CDS             <1..946
                     /locus_tag="VIJ87_12975"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY5445353.1"
                     /translation="EAIRLIERVAPSEASVLITGESGTGKELVAHAIHRLSGRSEASF
                     VDLNCAAFQESLLESELFGYEAGAFSGAKGRKLGLIELADGGTLFLDEVTELPAQLQA
                     KLLRAIETRTFFRVGGVRKVEVNVRIVAATNRNLETVVNDGVFRSDLLYRINGFQISL
                     APLRERPEDIEPLARHLLKQVGGTTPPELTPDAFDALRVYNWPGNVRQLKNCLERAVI
                     LSNNGRITVSELPPEVLRPAVPVTASNAIPTVPLSVEVPVSTSATVPGSLREVERQQI
                     LAALEQTGWHRGKTAEILGISPSTLYRRLRDYDLERRR"
BASE COUNT          236 a          289 c          280 g          234 t
ORIGIN      
        1 agaggcaatt cgcttgatcg agagagtagc tccgtcagaa gcgtctgtgc ttatcaccgg
       61 ggaatcaggg acgggcaagg aacttgtggc ccatgctatt caccgattgt caggtcgctc
      121 tgaagcttct ttcgttgatc taaactgcgc tgcgtttcag gagtcgctcc tggagtcgga
      181 gttattcggc tacgaggcag gcgccttttc gggtgcgaag ggacggaagc tcggcttgat
      241 cgaactcgct gatggaggaa ctttgtttct cgacgaagtg actgaacttc cggcccagtt
      301 gcaggctaaa cttcttagag cgattgaaac gcggactttc ttccgggtgg gcggagtacg
      361 aaaagtagaa gtcaacgttc gcatcgtcgc ggccacaaac cggaacctcg aaacggtcgt
      421 caacgatgga gtattcagat ccgatttgct ttaccgcatc aatggctttc agatcagctt
      481 ggcgccactc cgcgagcgtc ccgaagacat tgagccgctt gcgcgacatc tcctcaaaca
      541 agttggtgga accacgccac ccgaactaac gcctgatgcg tttgacgctc tgcgtgttta
      601 caattggccg ggcaatgtcc gacaactaaa gaactgtcta gagcgcgccg tgattctttc
      661 caacaatggc cgcattactg tttcggaact cccaccagaa gtgttgcgtc ccgctgttcc
      721 agtaaccgca tcaaacgcga ttccaactgt cccgctcagt gtggaagttc cagtctcaac
      781 aagtgccacc gtacctggat cgctgcgtga agtagaacga caacagatcc tcgccgccct
      841 tgaacaaacg ggctggcatc gtggcaagac cgcagagatc cttggaatct cgccttcgac
      901 tctctaccgc cggctgcgcg actacgatct cgaacgtcgt cgataactac caataacaac
      961 ggaacaagaa cggcgcgatg gctaatgtca ttcgcgccgt ttggacatct ggttcatgaa
     1021 ctggggggcc cctgcgtcc
//
LOCUS       DATCGC010001347         1229 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_87261, whole genome shotgun sequence.
ACCESSION   DATCGC010001347 DATCGC010000000
VERSION     DATCGC010001347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1229)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1229
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87261"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..832)
                     /locus_tag="VIJ87_12980"
     CDS             complement(<1..832)
                     /locus_tag="VIJ87_12980"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY5445354.1"
                     /translation="MTSKVFLLVVFLIAFVPNSVSAQTSVILLGTGTPYPDPNAMGPA
                     TAVVVGKRVFLFDAGAGVMRQINAAGLPITGPEATFITHLHSDHTLGYSDLIITSWIM
                     RRRLPLQVYGPPGLKLMTDRLLAAFSEDIAIRTRGLEREVPGWLKVDVHEIRAGVVYD
                     RDGVKVTVIKVPHGSWKYAYGYRVDTPDRSIVISGDTRPSKALIAAARDVDVLVHEVY
                     LSTSVKREDRPGGEFWPQYMREFHTSELELGDIAAKANCKLLLLTHTIRFSGTDEELV
                     A"
     gene            complement(853..>1229)
                     /locus_tag="VIJ87_12985"
     CDS             complement(853..>1229)
                     /locus_tag="VIJ87_12985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445355.1"
                     /translation="AISSVTDRSELNIRVAIDGSGNIYALGTFNDAVFKFSPEGKYLN
                     KFGGDGDKPGQFRAPGSIAVDGHGKVYVGDIKGVQVFDSDGRFLRTFRPDGGNASGMI
                     FNDKNELLLVDRTKVVKVALKE"
BASE COUNT          322 a          340 c          284 g          283 t
ORIGIN      
        1 ccgctactag ctcttcatcg gtaccgctaa aacgaattgt gtgagttaag agaagtaatt
       61 tgcaatttgc tttcgcggcg atatcaccga gttcaagctc tgaggtgtga aactcccgca
      121 tgtactgtgg ccaaaattcc ccacccggcc gatcctcccg ttttacgctt gtcgataggt
      181 agacttcgtg aacaagcaca tcgacgtctc ttgcggcagc aatcaacgct ttgctcggac
      241 gcgtatcacc cgatatgaca attgaacgat ccggggtatc aacgcgatag ccatacgcgt
      301 acttccaact tccatgtgga acctttatca cagtcacctt gacgccatcg cggtcataga
      361 caactcctgc acggatctcg tgaacgtcaa ccttgagcca accagggact tcgcgctcaa
      421 gaccgcgagt ccggatcgca atgtcctcgg aaaacgctgc gagaagacga tcagtcatta
      481 gtttcaatcc cggaggccca tagacttgca acggtaaacg acgtcgcatg atccacgaag
      541 taataataag atctgagtaa cccaaagtat gatcggaatg caggtgggta ataaacgtcg
      601 cttcaggtcc agtaattggt agtccggctg cattgatctg gcgcataacg ccagctccag
      661 catcgaacag aaacacacgc ttaccaacaa caaccgccgt cgccggtccc atggcgttag
      721 gatctggata aggagtacct gtaccgagga gaatgacgct ggtctgcgct gagacagaat
      781 tcggaacgaa agcgatgaga aagactacga ggaggaaaac cttacttgtc attgttctcg
      841 ataccgaaag ctctattcct tgagcgctac tttcacaact ttggtccggt caaccagcaa
      901 cagttcattc ttatcgttga agatcatgcc cgatgcgttg ccgccatccg gacgaaacgt
      961 tctgagaaag cgtccgtcac tatcgaatac ctgcacacct ttgatatcgc caacataaac
     1021 ctttccgtgg ccatcaaccg cgatgctgcc tggcgctcga aactgtccag gcttgtctcc
     1081 gtcaccacca aacttgttca ggtattttcc ttccgggcta aacttgaaca ctgcatcgtt
     1141 gaaggtgccc agtgcataga tattgccaga gccgtcgatc gccacacgga tattcagctc
     1201 agatcgatca gttacagaac taatcgccg
//
LOCUS       DATCGC010001348         1211 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_385059, whole genome shotgun sequence.
ACCESSION   DATCGC010001348 DATCGC010000000
VERSION     DATCGC010001348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1211)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1211)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1211
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_385059"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..327)
                     /locus_tag="VIJ87_12990"
     CDS             complement(<1..327)
                     /locus_tag="VIJ87_12990"
                     /inference="COORDINATES: protein motif:HMM:NF016152.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HEY5445356.1"
                     /translation="MPKASKEPTPTKRATSSGEKHVERVRKVCLQLPETMEKLSHGEP
                     TFFVKKRVFAMCSINHHNDGHIAVVIPAAIGIQAALIEESPKKFYRPPYVGHAGWVGI
                     ELPRVSD"
     gene            complement(329..712)
                     /locus_tag="VIJ87_12995"
     CDS             complement(329..712)
                     /locus_tag="VIJ87_12995"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY5445357.1"
                     /translation="MKLERIHQIAVFARDLDEAISFYRDTLGATYLTKFDPPGLVFFD
                     FGGTRVLLEKTGPKASVYFRVDDIHAAYQELSEKGVKFIAEPHMIFRDDSGMFGTAGE
                     EEWMAFFSDPSDNILALASRVIKRD"
     gene            complement(709..>1211)
                     /locus_tag="VIJ87_13000"
     CDS             complement(709..>1211)
                     /locus_tag="VIJ87_13000"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY5445358.1"
                     /translation="ERLTLREVSTDDADFILRLLNEPSFLRFIGDKGVRNLQDARQYI
                     LNGPIASYNQNGFGLYLVVLKSTNTSIGMCGLIKRETLTDVDIGFAFLPEFWNKGYAL
                     ESATAVFSYGKNVLKLPRIVAITNKDNVTSGKLLERLGLHFDRLIDLNGDGDETKLFI
                     SDDLLT"
BASE COUNT          300 a          305 c          296 g          310 t
ORIGIN      
        1 atcacttaca cgcgggagtt cgattccgac ccagccagca tggccgacat agggtgggcg
       61 gtagaatttc ttcggcgact cttcaatcaa tgctgcctga ataccaatcg ctgccggaat
      121 aacaactgcg atgtgtccgt cgttatgatg gttgatcgaa cacatcgcaa acacacgctt
      181 ctttacgaag aacgttggct cgccgtgtga aagcttttcc attgtctccg gtagttgcaa
      241 acagactttg cggacgcgct caacatgctt ttcgccagag gaagtcgctc gtttcgtggg
      301 tgttggctcc ttcgaagctt ttggcatttc agtctctctt tattacgcgg ctggccagcg
      361 ccagaatgtt gtcggacgga tccgaaaaga aagccatcca ctcttcttct ccggcagtac
      421 caaacatccc gctgtcgtcc cgaaagatca tgtgtggttc agcaatgaac ttcactcctt
      481 tttcactgag ctcttgatac gcggcatgta tatcgtcaac acgaaaatag acgctcgcct
      541 ttgggccggt tttttcgagc aagacacgcg ttccaccaaa gtcgaagaag actaaccccg
      601 gtggatcaaa cttcgtgaga tatgtagcgc caagagtgtc tcgataaaag ctgattgcct
      661 cgtcgagatc tcgagcaaag acagcgattt gatgtatgcg ttcaagtttc atgtcagtag
      721 gtcgtcagaa atgaagagtt tagtttcatc accgtcgcca ttcaggtcga tcaaacgatc
      781 gaaatgaagt ccgagtctct caaggagctt tcccgacgta acgttgtcct tgttagtgat
      841 agcaacaatt cgcggcagtt tcaaaacatt tttcccgtaa gagaatactg ccgttgctga
      901 ctcgagcgcg taccccttat tccagaactc cggcaggaac gcaaacccga tatcaacgtc
      961 ggtgagcgtc tcccttttga taagtccgca catgccaata gacgtgttcg tgcttttcaa
     1021 cacaacgagg taaagcccga agccgttctg gttgtagctg gcaataggac cattaagaat
     1081 atactgtcgc gcatcctgga gattgcgaac gcctttgtcg ccaatgaaac ggagaaacga
     1141 aggttcgttg agaagacgca agataaagtc ggcgtcatct gttgagactt cgcgcagtgt
     1201 gagtcgttct g
//
LOCUS       DATCGC010001349         1120 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_53728, whole genome shotgun sequence.
ACCESSION   DATCGC010001349 DATCGC010000000
VERSION     DATCGC010001349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1120)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1120)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1120
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53728"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1120)
                     /locus_tag="VIJ87_13005"
     CDS             complement(<1..>1120)
                     /locus_tag="VIJ87_13005"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY5445359.1"
                     /translation="NIASIYGLEETNGQEPNQVGLVMELVEGPTLADRLRSGPIAFDE
                     ALPIAKQIIDALEVAHERNIVHRDLKPANVKVTEEGIVKVLDFGLAKVFATDTPNADL
                     SHSPTLLKGTEAGVILGTAAYMSPEQAKGKAVDKRSDIWAFGCVLFEMLTGKQPFVGE
                     TLTDILASVVRGEPDWIQLPATAPASVKHLIQRCLEKDVKHRLRDIGDARFELDQTES
                     NDRQPAIVTSHKTSRHWLPVIAVVAVVIIAAMAGALVPKWFGDEPVAPRVIRSEMELP
                     ADQMEQRVRVVISPDGANLVYVAKQKMYLRPFNSLESVPIAGTEGGINPFFSPDGKWI
                     GFWNSGVIKKVQLPGGTPITICNTEVIGASWGTDDTILL"
BASE COUNT          253 a          297 c          278 g          292 t
ORIGIN      
        1 caggagtatg gtatcgtcag taccccaact cgccccgatc acttcggtat tacaaattgt
       61 tattggtgtt ccgcccggga gttgtacttt cttgattacc ccactattcc aaaagccaat
      121 ccatttcccg tcaggtgaga agaaaggatt gatgcctcct tcggttcctg cgatcggcac
      181 tgactcaagg gagttaaatg gcctgaggta catcttctgt ttggcaacgt atactaagtt
      241 tgcgccgtca ggagagatga caactctaac gcgctgctcc atttgatccg caggcaattc
      301 catctcgcta cgaataaccc taggcgctac cggttcatct ccaaaccact tcggtaccaa
      361 tgcgcctgcc atagcagcaa tgatcacaac agcaacgact gcgatgacag gcaaccaatg
      421 gcgagacgtc ttgtgacttg tgacaattgc cggctggcgg tcgttggatt cggtctgatc
      481 cagttcaaac cttgcgtcgc caatgtctct caatcggtgc tttacatcct tttcgaggca
      541 gcgctgtatc aaatgcttta ctgaagcggg cgcggttgcg ggcaactgaa tccaatctgg
      601 ttcaccccga acgacagacg cgaggatgtc agtcagcgtc tcacctacaa acggctgctt
      661 gcctgtaagc atttcaaaca agacacaacc aaacgcccaa atgtctgaac gtttatcaac
      721 tgcttttcct tttgcttgtt ccggactcat ataggcggca gtgccaagaa tcacgcctgc
      781 ttcggtgcct ttgagaagcg ttggtgaatg cgagagatca gcgtttggcg tatcggtggc
      841 aaacacctta gcgaggccga agtctaagac tttgacaatg ccttcctcgg tgacttttac
      901 gtttgctggt ttcaaatcgc gatgaacgat gttgcgttcg tgcgccacct caagcgcgtc
      961 aattatctgt tttgcgattg ggagtgcttc atcgaaagcg atgggtccac tgcgaagtcg
     1021 atccgcgagg gttggtcctt cgaccaactc cattaccagg ccgacctgat tgggttcttg
     1081 gccgttggtt tcctcgaggc cgtagatgga agcaatgttc
//
LOCUS       DATCGC010001350         1675 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_252160, whole genome shotgun sequence.
ACCESSION   DATCGC010001350 DATCGC010000000
VERSION     DATCGC010001350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1675)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1675
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252160"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(117..602)
                     /locus_tag="VIJ87_13010"
     CDS             complement(117..602)
                     /locus_tag="VIJ87_13010"
                     /inference="COORDINATES: protein motif:HMM:NF014525.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HEY5445360.1"
                     /translation="MSDTRASNPPAPSINVTPLIDVLLVMLIIFMVASPLRPHRFTAS
                     VPSPPDDRILDPHPNTLVVTVDLDRSLKLNALTDMGTVDDMSKLNQKLVSLFAERAKN
                     HNYRYDMALRSDLAEAQRIEKTVFIKAPRSVSYGEIARVIDGLKGSGADPIGLQLDDL
                     K"
     gene            complement(671..1597)
                     /locus_tag="VIJ87_13015"
     CDS             complement(671..1597)
                     /locus_tag="VIJ87_13015"
                     /inference="COORDINATES: protein motif:HMM:NF025523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YndJ family protein"
                     /protein_id="HEY5445361.1"
                     /translation="MKFARTSALVGALLWGVTLLIRTGDSRETELIQKIFLLAIFVIV
                     PLCLSLITADEDWLALRIAVWLQPFAAVVCFVSFLIPQGMLAGVLSSVWLATISFVAL
                     AGLLRIFFAESFVSYELSVSAGMLYLPIGGAWLVASRLGTQPLGFGDTIVLLTAIHFH
                     FAGFAAPLLAGFAGRAVRDKQTASRVVGLAATGIILGTPLVAAGITFSPAVALVGAAI
                     ETIGLSLLAVIVLFYVVPLTYSNAAKALFFIASLSSIAAMVLACLYAYSIVTHTLIID
                     IPHMAMTHGLLNSFGFALSSLIAWTLSPPPKH"
BASE COUNT          467 a          414 c          443 g          351 t
ORIGIN      
        1 gagcctacgc actgccgtat gctccaaaag cttagcagat catcggcggt ttggagttag
       61 gaatttggtt atgggttgcc accggctctc aagtccgtgc cacttaaaca gcctggctac
      121 ttcaggtcgt caagttgtag tccaattgga tccgcgccac tgccttttaa tccatcaatt
      181 acacgagcga tttccccata cgagaccgac cgtggcgcct taatgaaaac agttttctca
      241 attcgttgtg cttctgccag gtcggaacga agcgccatgt cgtagcgata gttgtggttc
      301 ttcgcacgtt ccgcaaacaa agaaaccagt ttctgattga gcttggacat atcgtcgact
      361 gtgcccatgt cagtcaaagc attcagtttt agggaacggt cgaggtcaac cgttaccaca
      421 agggtgttag ggtggggatc aagaattcga tcgtccggcg gtgacggaac gctcgccgta
      481 aagcgatgag gccgcaaagg tgaagcaacc atgaaaataa tgagcatcac caggagtaca
      541 tcgattagtg gcgtgacgtt gattgaaggt gcgggtgggt tgctggcacg agtgtcgctc
      601 atgagttgtc cttcggtttt ggaatcacac ctttagacaa ccgccttcct aaaaggttcc
      661 cttgcatcgg ctaatgtttt ggcggcggag aaagagtcca ggcaatgagg ctcgagagag
      721 caaacccaaa tgagtttaat agaccatgag tcattgccat gtgaggaatg tcgatgatca
      781 gcgtgtgagt aacgatgctg taagcataca ggcacgccag aaccattgct gcaatactcg
      841 acaaagacgc gatgaagaat agagctttcg cggcgtttga gtaggttaag ggaacgacgt
      901 agaaaagaac aatcacagcg agtagcgaca gaccaatagt ctctatcgca gctcccacca
      961 acgccactgc aggtgagaag gtaatccctg cggcgacgag cggagtaccc agaataattc
     1021 ccgttgcggc aagaccaacc acccgtgagg ctgtttgttt gtcccgcacg gcgcgccctg
     1081 cgaatccagc caataacggc gcagcaaaac cggcaaagtg aaaatgtatc gccgtcagca
     1141 gcactatcgt gtcaccaaag ccgagtggtt gggtcccgag acgtgaggca actaaccatg
     1201 ctccaccaat cggcaggtaa agcattccgg cgctgactga aagctcataa ctgacaaaag
     1261 attccgcgaa gaagattcga agaagtccgg caagcgccac gaatgaaatc gtcgccaacc
     1321 aaacagacga caaaacaccc gccagcattc cctgaggtat gaggaatgaa acaaaacaca
     1381 caactgcagc gaatggttga agccaaaccg ctatacgcaa ggcaagccaa tcctcgtcgg
     1441 cggtaatcag tgaaagacag agtgggacga tgacgaagat agcaagcagg aatatctttt
     1501 gaatgagttc ggtttcacga gagtctcccg ttcgaatgag aagcgtgacg ccccagagta
     1561 aagcaccaac aagtgcgctt gtacgggcaa atttcatttc agattctctt taagattcac
     1621 ttcagtagct acctaatcca gaggcgatcg ctcttctggg accgcaggcg gagac
//
LOCUS       DATCGC010001351         1229 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_53761, whole genome shotgun sequence.
ACCESSION   DATCGC010001351 DATCGC010000000
VERSION     DATCGC010001351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1229)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1229
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53761"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..550)
                     /locus_tag="VIJ87_13020"
     CDS             complement(<1..550)
                     /locus_tag="VIJ87_13020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445362.1"
                     /translation="MSARHVTDEEDDVFTIESVYTMDKREVRNDDAAVDPFAIDGEQV
                     RKLNGTSRGMKRKVTNTLQKYHRSADGTVESKDISDDIDQTGYDYFQVAQPPYSMEAF
                     AAAYELSAPHYAAVNAKVANIVGLGWSLNESKKTSRALEDLAEDAEKLKKTAKKLANA
                     KQDLEEEIDSFNEESTFTETLIN"
     gene            complement(528..908)
                     /locus_tag="VIJ87_13025"
     CDS             complement(528..908)
                     /locus_tag="VIJ87_13025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445363.1"
                     /translation="MSNPNKGLRTTNRQQIQELPWGMWVWECADGLILANENGDIMHV
                     FCSDREPLRMQAAKKALTDAAYHYGYGDGGRAVFWSGKRPISDEELQSQLDRASAGLI
                     PDPLDIGAIREEMEGIRHERQTRN"
     gene            complement(951..>1229)
                     /locus_tag="VIJ87_13030"
     CDS             complement(951..>1229)
                     /locus_tag="VIJ87_13030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445364.1"
                     /translation="VNGLAGSTIRRGEWTVVHFSKATNITGAITVSGNVQVGRVVLYF
                     NQLSAGAIANGVSNYTGRVVATRAAGGPVTVFEPAASANVYSHDWANV"
BASE COUNT          263 a          333 c          293 g          340 t
ORIGIN      
        1 cgttgataag tgtctctgtg aaagtggact cttcattgaa tgagtcaatt tcctcttcca
       61 agtcctgctt ggcattagcc aacttcttgg cggtcttctt caacttttca gcgtcttctg
      121 ccaggtcttc cagtgcacga gaggtcttct tagactcgtt cagagaccag cccaatccta
      181 caatgtttgc aaccttagca ttaacggcag catagtgcgg agcggacaat tcgtatgccg
      241 ctgcgaacgc ctccatgctg taaggtggct gcgccacctg gaagtagtca tatcccgttt
      301 ggtctatatc atcgctgata tcttttgatt caactgtacc gtcagcggag cggtggtact
      361 tttgaagtgt gttggtaacc ttgcgcttca taccgcgcga agtaccgttt agtttgcgta
      421 cttgttctcc atcaatggca aacgggtcca ccgctgcgtc gtcgttgcgg acctctcgct
      481 tgtccattgt gtaaacgctt tcaatggtga aaacgtcgtc ttcttcgtca gttacgtgtc
      541 tggcgctcat gtcttatacc ttccatttcc tcacggatag ccccaatgtc tagcgggtct
      601 ggaatcaaac ctgcggacgc acggtccaat tggctttgaa gttcttcgtc ggagattgga
      661 cgcttaccgc tccaaaatac ggctctgccg ccgtctccat atccgtagtg atatgctgcg
      721 tctgttagtg ctttcttagc ggcctgcata cgcaagggct cgcggtcaga acagaacaca
      781 tgcataatgt cgccgttctc attggctaga attagcccgt cggcgcattc ccaaacccac
      841 attccccacg ggagttcctg gatttgctgt cgattagtgg tcctcagacc cttattagga
      901 ttactcatac ctcgatagta gcataatcga gttctaatag ccaaatgtgg tcagacgttg
      961 gcccaatcgt gagaataaac gttagcagat gccgctggtt cgaatacggt taccggtcca
     1021 ccggctgcac gggtcgccac gactcgtccg gtatagttag atacgccatt agcaatggca
     1081 ccagcagaca attggttgaa atacaagact acccggccca cctgtacatt tccgctgacc
     1141 gtgatagcgc cagtgatgtt cgtagccttt gagaaatgta cgacggtcca ttccccacga
     1201 cgaattgttg agcccgccag accgttcac
//
LOCUS       DATCGC010001352         1358 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_453660, whole genome shotgun sequence.
ACCESSION   DATCGC010001352 DATCGC010000000
VERSION     DATCGC010001352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1358)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1358)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1358
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_453660"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..548)
                     /locus_tag="VIJ87_13035"
     CDS             complement(<1..548)
                     /locus_tag="VIJ87_13035"
                     /inference="COORDINATES: protein motif:HMM:TIGR02999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF-type sigma factor"
                     /protein_id="HEY5445365.1"
                     /translation="MELTNSPVISAREFRVDTDADVLFSTLYSELHRLAKRQLARQWS
                     PIGLGVTTLLHEAYLNIADREEPEFPDQARFMGYAARVMRGLIIDFARTRNATKRGGK
                     FEITSLTLDTVENAVDAKELSRISDALEELARVEPDLATLVDLRFFCGFSFSEISAMQ
                     MVSERTVQRKWEKARIFLHHSL"
     gene            complement(1124..>1358)
                     /locus_tag="VIJ87_13040"
     CDS             complement(1124..>1358)
                     /locus_tag="VIJ87_13040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445366.1"
                     /translation="FKNSERKTSLFTQGIRNEGAKDGKSMLVFDNVNGQYFLRNIYSV
                     YARTSVAFPKSKLEQKSQEAPAIRNIYAENSSR"
BASE COUNT          325 a          341 c          333 g          359 t
ORIGIN      
        1 ctaaggctgt ggtgcaggaa gatccgtgcc ttttcccact ttctctgaac ggttcgttcg
       61 gacaccattt gcattgctga aatctcagag aacgagaatc cacaaaagaa tctcaagtcg
      121 acaagcgtcg ctaggtcggg ctccactctg gccaactctt ccaaagcatc gctgatcctc
      181 gacaattcct tcgcgtcaac cgcattctca acggtgtcaa gggtcaatga ggtgatctca
      241 aacttgccac ctcttttcgt cgcattgcga gtcctggcaa agtcgataat tagtccccgc
      301 ataacgcgcg ccgcatagcc catgaatcgc gcttggtctg ggaattctgg ctcctcgcga
      361 tcggcgatgt ttaaatacgc ttcgtgcagg agcgtcgtga caccaaggcc aatgggtgac
      421 cactgtctgg ccaactggcg tttcgcaagc ctgtgtaact cggaatacaa ggtgctaaaa
      481 agcacatcag catctgtgtc cacgcgaaac tctctcgcgc tgatgacggg ggaattcgtc
      541 agttccacga taattgtctc ctatggtccg gatgttccag gagtgttgaa cgacgcgaaa
      601 tattctcttt catcgttaat caactgttag atccgcgcgc cttctcgttc taactggaaa
      661 atgccgcgca accttcgctg gggtaagttg actgttccta tttgcaggga gtgcgactac
      721 caaatccaat gtagaagtta atccattgcg acttgtcaca agtttgtaat ttattaagtg
      781 ctaaaggtcg attctcgtaa ctggattcaa gcattagaag tctaagtact gtggaacaat
      841 ctggcgacct gaacaatgaa gcgaccgcag gttggcggcg gcctagagcc tcagaagcac
      901 ggtagaacag ggcacctcaa ccatttcatc acgaaatcaa cgaagcgcac tcgataggga
      961 tcaattagaa gtatgtagat aacgttttaa tcttggcgag tttatgagcc agccaatact
     1021 cggaaggcat gccagggaga agaagccgtc tactgatgcc tctctccctg cgtgttgagt
     1081 tatgggtgtt atcgtcatcg caattgtggg agatctgttg cacttacctg ctcgagttct
     1141 ctgcatagat attgcgaatc gccggtgctt cctgtgattt ctgctctagc ttcgacttag
     1201 gaaatgccac gctcgttctg gcgtagaccg agtagatgtt gcgcagaaag tactgcccgt
     1261 tgacgttatc aaagacaagc attgacttgc cgtccttggc tccttcgttt cgaataccct
     1321 gcgtgaacag ggatgtcttt cgttcactgt tcttgaat
//
LOCUS       DATCGC010001353         1728 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_118474, whole genome shotgun sequence.
ACCESSION   DATCGC010001353 DATCGC010000000
VERSION     DATCGC010001353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1728)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1728)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1728
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118474"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            178..417
                     /locus_tag="VIJ87_13045"
     CDS             178..417
                     /locus_tag="VIJ87_13045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445367.1"
                     /translation="MPKHSAKVVCYEGSVWISPRQFWGLVRDNIIEYVSEPPLTGKFK
                     GQPADFLVTVNHTVLSLACPEHRQSVLHSKRYTKR"
     gene            452..1117
                     /locus_tag="VIJ87_13050"
     CDS             452..1117
                     /locus_tag="VIJ87_13050"
                     /inference="COORDINATES: protein motif:HMM:NF019349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEY5445368.1"
                     /translation="MLELIQPISKRDQVVRAMKEAILSGTIQPGASIVESKIAQQLGA
                     GVPLIREALIELEHQGFVQRTPYKGTTVTKLSPSDVRHIFALRVELEAIAIEWAKEHA
                     TDADLESLRQEIRKMETAATNLDLPQFYEGDLSFHRKIWSLSGNPYLVDVLERLVVPL
                     FAFFLMKTSRQQASYIDSACMHAKIVEAMPVKNSVELREMFRDSLVNWKDDMVKLLFA
                     EEE"
BASE COUNT          443 a          442 c          443 g          400 t
ORIGIN      
        1 cccaatagct aaggccgaag acccaaggcc aaaggccaac cccaaatcct ctgataacaa
       61 gattctaata tgatcttgta acctcagaat attcatctat actacgagcg tccaagaacc
      121 agtaactgct ccaaatggag attccctact cgggcgattt ttttcggagg taagcgtgtg
      181 cccaagcatt cggcaaaggt cgtttgttac gaaggtagcg tctggatttc accccgccag
      241 ttctgggggt tggttcgcga taacatcatc gagtacgtga gcgagcctcc gcttacagga
      301 aagttcaagg gacaacctgc cgacttctta gttacggtaa atcacaccgt cctcagtctg
      361 gcgtgccccg agcatcgcca atcggtgttg cactcaaagc gttacacaaa aagataattt
      421 gggtttgtct atcggcctgg aggaccggct tatgctggaa ctgatccaac cgatctcaaa
      481 acgagatcag gtcgtccgag caatgaagga agcaattctg tcgggcacta ttcaacccgg
      541 cgcatcaatt gtcgaaagca agattgctca acaactcggc gccggtgttc cccttattcg
      601 cgaagcgttg attgaactgg aacaccaggg cttcgttcag cggacacctt acaaaggaac
      661 aacggtcaca aagctctcac ccagcgatgt gcgccacatc tttgctctac gcgttgagct
      721 ggaagcaatc gcaattgaat gggcgaagga acatgcgact gacgctgacc tcgaaagtct
      781 gcgtcaggaa attcgcaaga tggaaacggc agcgacgaat ctcgatctgc cgcagttcta
      841 cgaaggcgac ctttcgtttc accgaaaaat ctggagtctc tcgggtaatc catatttggt
      901 cgatgtgctc gagcgcctgg ttgtgccttt gtttgcattc ttcctgatga agacaagcag
      961 gcaacaggca tcctatatcg acagtgcttg catgcacgcg aagattgtag aagccatgcc
     1021 agtgaagaat agcgtcgaac tccgcgaaat gttcagagat tctctagtca actggaaaga
     1081 cgacatggtt aagttgctct tcgcggaaga agaatgaaat gtccgatatg ctttagcttg
     1141 tcgcggcgat cagcgctggg cgctcttagc cgactgaacg acaagctaga gagggcaatc
     1201 acatacttga cgaatcagtg agcgagcttg agtccgcgaa gcggacgctg gcgtaaagcc
     1261 tgggacgtaa gccccaggag gagatgccca acaaactccg agcccgcgaa gcgggcgata
     1321 gcacatcagg gagcagtttc tttgaaaggg ctttcgcccg cttcgcaggc tcaaacttct
     1381 tgctccacga tccctggggc ttacgcccca ggctttacgc cagcgtccgc ttcgcggact
     1441 caaagcagat atctgattcg tcaagtatgt tgttgccctt tagaggttct tgcaaaactc
     1501 tcattctccc caagcttcag cttggggtta cagtagtgcc tagttttggg gaaccgtttt
     1561 aacggtttac gagtttgaga caatgaagct cgactccgaa ggttcattgg tgttcggatt
     1621 cattttgcac aggtaaaccg ttgaaacggt tcctgagtaa ctgggggcgc accttaaccc
     1681 caaaccaaag cttggggaga atgagaccaa ctcccgctaa tgatctga
//
LOCUS       DATCGC010001354         1674 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_217980, whole genome shotgun sequence.
ACCESSION   DATCGC010001354 DATCGC010000000
VERSION     DATCGC010001354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1674)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1674)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1674
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_217980"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(82..627)
                     /locus_tag="VIJ87_13055"
     CDS             complement(82..627)
                     /locus_tag="VIJ87_13055"
                     /inference="COORDINATES: protein motif:HMM:NF016144.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GrpB family protein"
                     /protein_id="HEY5445369.1"
                     /translation="MAAQTETGLIGGKEKREIRIVSYDAAWPRKYEANARVIADALSA
                     SALRIEHIGSTSVPGLAAKDIIDILVVVQDSANESAYLPQLEAFGYILRVREPEWNEH
                     RMFRTKEKDVHVHIYSSGCPEIERNLSFRDRLRRDIDDRRRYEQRKRELAVKEWSDMN
                     EYAEAKSTVIESILNAASTSP"
     gene            complement(670..1557)
                     /locus_tag="VIJ87_13060"
     CDS             complement(670..1557)
                     /locus_tag="VIJ87_13060"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HEY5445370.1"
                     /translation="MERKTASEYPQELLDLFHEYQHGDINRRTFLDRAAKFAIGGLTV
                     ASIFESLTPNYAWAQQVPPDDKRIKVGYETVQSPNGNGSIKGYLARPAKKGKLPVVLV
                     IHENRGLNPYIEDVARRLALANFIAFAPDGLTSVGGYPGNDEKGAVAFRTVDGKKMTE
                     DFVAAAKWLKARPDSKGKLGAVGFCFGGGMVNQLAVRLGADLNAGVAFYGRQPGVDDV
                     PKISAPLLLNYAGNDQGVNAGIANYEAALKANNKVYVLHMYEGKLHGFHNDTTPRYDA
                     EAAKLAWERTLEFFKKYLR"
BASE COUNT          347 a          454 c          421 g          452 t
ORIGIN      
        1 gatgagaccg gaagcgattc cgatcagact tatcactacg tgcactttgg taaaggcatc
       61 catgttgttg tttacatcca gctatggaga agtcgaagct gcgttgagga tactttcgat
      121 cactgtcgac ttggcctccg cgtactcgtt catgtctgac cactctttca ccgccagttc
      181 gcgcttcctc tgctcgtagc ggcgtcgatc atctatgtct cgtcgcagtc ggtcccggaa
      241 gctcaagttt cgctcgatct ccgggcagcc ggatgagtag atatggacgt gtacatcctt
      301 ttccttggtg cgaaacatcc ggtgctcgtt ccattccggc tctcgcacac gcaggatata
      361 accgaaagct tccagttgcg gaaggtaggc tgattcattt gctgaatcct ggaccacaac
      421 aaggatatca atgatgtctt tggcggctag accaggtacc gatgtggatc cgatgtgttc
      481 gattcgtaac gctgaagcac ttagcgcatc agcaatgacg cgagcgttcg cctcgtattt
      541 ccttggccaa gccgcgtcgt agctgacgat cctgatctcg cgtttttcct tgccgccgat
      601 cagccctgtt tcagtttgtg ctgccattac agtccttagc tatcggtgac gaagtgacgt
      661 atcacatggt taccgcaggt actttttgaa aaattcgagc gtgcgctccc atgctagttt
      721 cgccgcctcc gcgtcgtaac gtggtgtcgt gtcgttatgg aagccgtgca gtttaccctc
      781 atacatgtgc aggacgtaca ccttgttgtt ggccttgaga gcggcttcgt aattcgcgat
      841 gcctgcgtta acgccctgat catttcctgc gtaattcaat aacagcggcg cagaaatctt
      901 gggcacatca tcaacacctg gttggcgccc atagaacgca acgcccgcat tcagatcagc
      961 gcccaggcgc actgctagtt gattcaccat tccaccgcca aagcaaaaac caactgcacc
     1021 gagcttccct tttgaatccg ggcgtgcctt gagccacttg gccgcagcga cgaagtcttc
     1081 cgtcatcttt tttccatcca ccgtgcgaaa agcaactgcg cctttttcat cattacctgg
     1141 ataaccacca accgacgtca gtccatctgg cgcgaaggcg atgaagttgg cgagcgcgag
     1201 acgacgcgct acgtcctcaa tgtaaggatt gagcccgcgg ttttcgtgaa tcacgagcac
     1261 aacgggaagc tttccctttt tagccggacg cgcgagataa cctttgatcg atccgttgcc
     1321 attcggagat tgcacagtct cgtatccaac cttgatgcgt ttgtcatccg gaggcacttg
     1381 ctgcgcccat gcgtaattag gtgtcaggct ctcgaaaatt gacgctacag taagcccacc
     1441 gattgcaaac ttggcggcgc gatcgaggaa ggtgcgacgg ttgatgtcgc cgtgctgata
     1501 ttcgtgaaag aggtctaaca actcctgcgg atactcagat gctgttttac gttccatttg
     1561 tgctccttgg ctgtgactgg gtggtgcagt gtgattttac tattcaatgg gtcgatttcg
     1621 aaatttgtcg attgtcgcga ttctgattct tcttagaaac tcttttcgcg ttct
//
LOCUS       DATCGC010001355         1135 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_187097, whole genome shotgun sequence.
ACCESSION   DATCGC010001355 DATCGC010000000
VERSION     DATCGC010001355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1135)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1135)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1135
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187097"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..862
                     /locus_tag="VIJ87_13065"
     CDS             <1..862
                     /locus_tag="VIJ87_13065"
                     /inference="COORDINATES: protein motif:HMM:NF013355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HEY5445371.1"
                     /translation="SDRPIDVWLDEFKQVKKEYPNHILIASIMEEYEKSRWQELTRMV
                     QDTGVDAFELNFSCPHGMTERKMGSEMGEHPDLCEEVTSWVTEVSKIPVWAKMTPNIT
                     NIREPAMAAVRGGAVGISAINTILSVIGVDLETLRPMPTVEGYAVPGGYSAQAVRPIA
                     LRMVSQLALGIPEGTTISGIGGIENSHDALEFFLLGSSTVQICTGVMLQGVKMVDELK
                     EGVTKFMVDKGFNSVQEIVGKSLPYFSTHMELVQKMKAAKRSKAGEASRDNEWAQKDI
                     TEKTAELTSN"
     gene            complement(951..>1135)
                     /locus_tag="VIJ87_13070"
     CDS             complement(951..>1135)
                     /locus_tag="VIJ87_13070"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HEY5445372.1"
                     /translation="GNYSWWDYRAGMFRRNMGLRIDHIWISEPLVKRNVRTWIDIEPR
                     KWEKPSDHAPVIAEFE"
BASE COUNT          291 a          283 c          307 g          254 t
ORIGIN      
        1 ttcggatcgg cctatcgatg tttggctcga cgaattcaaa caggtcaaga aggagtatcc
       61 aaatcacatt ctgatcgcgt cgatcatgga ggagtacgag aagagtcgtt ggcaagaact
      121 gacacgaatg gttcaggaca ccggagttga cgctttcgaa ctcaactttt cttgccccca
      181 cggaatgacc gagaggaaga tgggttcaga gatgggcgaa catccggacc tttgtgaaga
      241 ggtgacgagt tgggtcaccg aagtatcaaa gatcccggtc tgggccaaga tgactcccaa
      301 catcacgaac attcgcgagc cggcaatggc tgcggttcgc ggcggagccg ttggtatctc
      361 cgcgataaat accatccttt cggtaatcgg agttgatctt gaaacattgc gtcctatgcc
      421 aacggttgaa ggctacgcgg ttccgggtgg ttactcagca caagcagtga ggccgatcgc
      481 gttacgaatg gtgagtcagc ttgcgctcgg tattcctgaa ggcacgacta tcagcggtat
      541 cggcggcatt gagaattcac acgacgcgct cgagttcttc ctgcttggtt cctcaactgt
      601 tcagatctgc accggagtaa tgcttcaggg cgtaaagatg gtcgatgagt tgaaggaagg
      661 cgtaacgaaa ttcatggtcg acaaaggctt caactccgtt caggagattg ttggcaagag
      721 tcttccttac ttctcgacgc acatggagtt ggtacagaag atgaaggctg caaagcgctc
      781 gaaagctggc gaagcgagcc gcgacaacga atgggcgcag aaagatatta cggagaagac
      841 tgcagagctg acttcaaact aagaaatgtc cgataggctt tagcttgtcg ttctcttcag
      901 ctaggaggcc gcaaaccgat ccacaacgac aagctaaagc atatcggaca tcattcaaac
      961 tcggcgatca ccggcgcgtg atccgaaggc ttctcccact tacgcggttc gatatcaatc
     1021 caggtcctca cgtttctttt caccaacggt tcactgatcc aaatgtgatc gatgcgcagc
     1081 cccatgttgc gtcgaaacat acccgcgcga tagtcccacc acgagtaatt tcccg
//
LOCUS       DATCGC010001356         2748 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_252203, whole genome shotgun sequence.
ACCESSION   DATCGC010001356 DATCGC010000000
VERSION     DATCGC010001356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2748
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252203"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            82..1269
                     /locus_tag="VIJ87_13075"
     CDS             82..1269
                     /locus_tag="VIJ87_13075"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HEY5445373.1"
                     /translation="MRSFAVVLLFLLSSVCCAQGSSDFQPATTNVWGAEYPRVDGRGR
                     VQLRVKAPDATKVRVNFWSGPKEEMQKQADGFWTITTTPLVPGLHYYMFVIDGAEVAD
                     TGSRSFFGGSKYASAVEVPEPGSTYYSIQDVPHGQVREVWYNSKVTGTWRHALVYLPP
                     NYDTQPKVRYPVLYLQHGGGEDETGWIRQGRANFILDNLIAAKSCKPLIIVMAYGYAR
                     RAGQTPPDLTGRPLGSPEMLKAMQDMSSAFEDDVTQALIPYVDSTFRTLRDRDHRAMA
                     GLSMGGMQTFQVAFNHLDLFSYIGGFSGAGGMLGGRKLDPKTDYKGAFADPTKFAKTV
                     HLLWIGVGTVEPERMRTGLQNLHHSLEEANIRHIYYESPGTDHEWQTWRRDLKDFAPR
                     LFQ"
     gene            1290..2057
                     /locus_tag="VIJ87_13080"
     CDS             1290..2057
                     /locus_tag="VIJ87_13080"
                     /inference="COORDINATES: protein motif:HMM:NF012669.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family DNA-binding transcription
                     regulator"
                     /protein_id="HEY5445374.1"
                     /translation="MLKNERNKEILRQLSRDGEVTVDQLAQRFEMSTATIRRELSNLE
                     GAGLLRRTRGGAIQVEPMLYEPFRRLSSFASQEQMHAAEKRRIGLAAAEMINDGEIVA
                     LSAGTTTTQVGRSIHHRKRVTIVTNAVNIAMELSHRADLKIIMTGGSLDKNCFALTGP
                     SGIASVNDMFYDQAFISVDGIHPEHGLTSDSPELGAVNRTIIQQSRKTVVVADHTKFG
                     KVGNTLIAPVEKVDLIITDKSAPRHLFGVSPKVLWVG"
     gene            2168..>2748
                     /locus_tag="VIJ87_13085"
     CDS             2168..>2748
                     /locus_tag="VIJ87_13085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445375.1"
                     /translation="MPSISRLTKCASIIILVSTILFANLPVWAQDKVQLSVDASKPGP
                     KIDRNLFGQFAEHLGYGVYEGIWVGPDSRIPNTRGIRNDVVAALKALKVPNVRWPGGC
                     FADEYHWRKGIGARAVTLNPNWGGVIEPNTFGTHEFMDFIDQIGSQAYLSVNVGSGTP
                     QEAAEWLEYLTASQPTTLVKERAANGHPAPYKIP"
BASE COUNT          686 a          697 c          720 g          645 t
ORIGIN      
        1 ctgccccgcg tgtcaactat gggactgttg aaacgcaggg tgttgacgct tgcggtccgg
       61 gtatgaacga ggagatcaaa gatgcgatca ttcgctgttg tcttattgtt cctattatcg
      121 agtgtgtgtt gtgcacaagg gtcgagtgat tttcaacccg ctactacaaa cgtttgggga
      181 gcagaatatc cgcgcgttga tggtcgcggt agagttcaac ttcgcgtgaa agctcccgac
      241 gccacaaagg tccgcgtgaa tttctggagt gggcccaaag aggaaatgca aaaacaagcc
      301 gacggcttct ggaccatcac taccacccca cttgttccgg ggctccacta ctacatgttc
      361 gttatcgacg gcgcagaggt tgccgatacg ggtagtcgct catttttcgg tgggagtaag
      421 tatgcgagcg ctgttgaggt tcccgagcca ggaagtactt actactcaat tcaagatgtg
      481 ccgcacggac aggtgcgtga agtttggtac aactcaaaag tgaccggcac ttggcgacat
      541 gcgcttgtct acttgccgcc aaattacgac acacaaccca aggttcggta tccagttctc
      601 tacttacaac acgggggtgg cgaggatgag acaggatgga ttcgtcaggg gcgtgcgaac
      661 ttcatattgg acaatttaat agctgcgaag agttgcaagc cattgatcat cgtcatggca
      721 tatggctatg cgcgacgagc tggacaaact ccaccagatt taaccgggcg gcctttaggt
      781 tctcctgaaa tgttgaaggc aatgcaggac atgtcttccg cgttcgaaga cgacgtaacc
      841 caagctttga ttccttacgt tgattcaaca ttcagaactc ttcgggatcg agatcatcgc
      901 gcgatggccg ggctctcaat gggagggatg cagaccttcc aggtggcttt caatcatctc
      961 gatcttttct cttacatagg tgggttcagc ggtgcaggtg gaatgcttgg cggccgcaaa
     1021 cttgatccca agaccgacta caaaggtgcg ttcgctgatc ccacaaagtt cgcgaagact
     1081 gttcatttac tctggatagg agtcggcacc gttgaaccag aacgaatgcg gacaggactc
     1141 cagaatcttc accattccct cgaagaagcg aacattcgtc acatctatta cgaatccccc
     1201 ggtacagatc acgagtggca aacctggcga cgtgatctga aggacttcgc cccgagactc
     1261 ttccaatgat ttgatctcac gagcgggcga tgctgaaaaa cgaacgcaat aaagaaattc
     1321 tgcgtcagct atcaagagat ggagaggtga cggtcgacca acttgctcag cgcttcgaga
     1381 tgtcgaccgc gacgattcgc cgagaactca gcaatctgga aggggcagga ctccttcgcc
     1441 gaactcgcgg cggtgctatt caagtcgaac ccatgttgta tgaacccttc cgtcgacttt
     1501 cgtcgtttgc ttcgcaagag cagatgcacg ccgccgaaaa gcgtcgaatt ggacttgccg
     1561 ctgccgagat gatcaacgat ggagaaatcg tcgctttgag tgcgggaact acaaccactc
     1621 aagttggtcg cagcattcat catcgaaagc gagtcactat tgtgaccaat gcggtcaaca
     1681 tcgccatgga acttagccat cgggcagatt tgaaaatcat catgaccggt gggagtttgg
     1741 acaagaactg ctttgcgcta acggggccat caggaattgc ctcagtcaac gacatgtttt
     1801 atgaccaggc tttcataagc gttgatggta ttcatccaga acatggttta acctcagaca
     1861 gtcctgagct aggcgcggta aatcggacta tcattcaaca gtctcgcaaa acggttgtgg
     1921 tcgccgatca cactaagttt ggtaaggtcg gtaacacgtt gattgcgccg gtcgagaagg
     1981 ttgatctgat catcactgat aagagtgcgc cacgacacct attcggagtc tcgccgaaag
     2041 tgctgtgggt tggatagtgc tttgttagct gagtgatcgc tgctgaagga acttgatctg
     2101 ctaagctctt gcccagaaac ctaactcgat ttttcgaaac cagccttcat cgtgagtgga
     2161 gaacaacatg ccctcaattt ctagattgac caaatgtgcg tcgatcataa tcctcgtttc
     2221 aacaattcta ttcgccaatt tgcctgtttg ggcccaggat aaagttcaac tatcagtcga
     2281 cgcatcaaaa cccggaccaa agatcgatcg caacctcttc ggtcaattcg cagaacacct
     2341 cggctatggc gtttacgaag gtatctgggt tgggcctgac tcgaggattc caaacacacg
     2401 cggcattcgc aatgatgtag tcgccgcact caaagcgctc aaagttccaa acgtgcgctg
     2461 gccgggtggt tgctttgcag acgagtatca ctggcggaaa ggcatcggcg cgcgagcggt
     2521 gacacttaat ccaaactggg gaggagtcat tgaaccaaat accttcggca cgcatgagtt
     2581 catggacttc atcgatcaga tcggatccca agcctacctc tccgtcaacg ttggttccgg
     2641 cacgcctcag gaagcagcgg agtggctcga gtacttgaca gcttcgcaac caaccacact
     2701 tgttaaagaa cgcgcagcga atggtcaccc tgctccgtac aagatccc
//
LOCUS       DATCGC010001357         2266 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_22807, whole genome shotgun sequence.
ACCESSION   DATCGC010001357 DATCGC010000000
VERSION     DATCGC010001357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2266)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2266)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2266
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22807"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1789)
                     /locus_tag="VIJ87_13090"
     CDS             complement(<1..1789)
                     /locus_tag="VIJ87_13090"
                     /EC_number="6.6.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF014563.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobaltochelatase subunit CobN"
                     /protein_id="HEY5445376.1"
                     /translation="MNITVAYVGSSLLSPLKDAERELNRVHKLGLRVAAYNFGAPLSD
                     AEWESVDEDLQKANVVFVIHVMDGENASRLLDALSRYQQQHNAVIVINCMPELMRQTR
                     MGKLNVNSLSGKASSETKNAEASVSKHPLRLLSSVGSWVGKQAARGRSNNRGHSQYLK
                     LADRLPGILKFVPTAGALTDVKHYLYLFCYFLQPTPANIQSMLLYALKVYVPDAKLKS
                     RVRIPQPEHVPSVAIYHPSAPKLFESFAEYRRWYLSRPGSPALDPQSTVGLLLMRPQV
                     VSKTTKHYDALINAIEAEGLGVVPAIATLMDNREAVSKFFIRPTDRTSQVSQIVSLTG
                     FSFVGGPAMNDSAAAAQFLSELNLPYRSAVSLDTQTIEAWSDSQTGLNPIQAGMQIAI
                     PEIDGATEPFIYGGIPSAGKEPVALTDRCNRFAKRLSRWNNLRTMPRDQVRLALVLFC
                     FPPNKGNIGTAADLDVFPSVWDLLVRLRADGYSVDVPKGHDQLRDLLLNGNSEGFGSP
                     ANVAYRMSVTEYHKLCPYIKDIERDWGAAPGSINTFGGELLIQGLHLGNVFIGVQPTF
                     GYEGDPMRLMMSRSGAPHHGFMSFYTYLTK"
     gene            complement(1871..>2266)
                     /locus_tag="VIJ87_13095"
     CDS             complement(1871..>2266)
                     /locus_tag="VIJ87_13095"
                     /EC_number="6.6.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF014563.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobaltochelatase subunit CobN"
                     /protein_id="HEY5445377.1"
                     /translation="SLSRDVKIRSLEETVRLESRAKTLNPKWYEGMLKHGFRGVAEIE
                     NHVSNTFGWSATADAVDDWIYSEVANTFLFDETMLERLRDLNPHSAHSLVRRLLEANG
                     RGYWDAEASALDKLREISRSLEDQLEGVA"
BASE COUNT          578 a          610 c          528 g          550 t
ORIGIN      
        1 cttttgtgag gtacgtataa aacgacatga acccgtggtg cggggcacca ctacgagaca
       61 tcatcagtcg catcggatcg ccttcataac caaacgttgg ctgaacgcca ataaacacat
      121 ttcccaggtg gagaccttga atcagcaatt ctccaccaaa cgtgttaata gaccctgggg
      181 ctgctcccca atcacgctcg atgtccttaa tataaggaca gagcttgtga tactccgtca
      241 ctgacattcg atatgcgacg tttgcgggcg agccaaaccc ctcactattt ccattcaaca
      301 gtaaatcgcg cagttgatca tggcccttgg gaacatccac cgagtaacca tccgcacgca
      361 accgcaccag caaatcccag acactcggga acacatcaag gtcagctgcg gtgccaatgt
      421 ttcctttgtt tggaggaaaa cagaaaagca caagcgcgag tcgaacttga tcacgaggca
      481 ttgttcgaag gttattccaa cggcttaaac gcttcgcgaa tcgattacac cgatctgtta
      541 gtgctaccgg ctcttttcct gcggaaggaa tgccaccgta gatgaatggt tcggtagcac
      601 catcgatttc cggaatcgcg atctgcattc ctgcttgtat cggattcaaa cccgtttggg
      661 aatcgctcca cgcttcgatt gtttgagtat caagactaac tgcggagcga tagggcagat
      721 tcagttcaga taagaactga gcggccgccg cgctgtcgtt catggctggc ccgccaacaa
      781 agctgaaacc agtcaacgaa acaatttgcg agacttgaga agttcgatcg gttggccgaa
      841 taaagaactt cgaaacagct tcgcgattgt ccatgagcgt ggcgatcgct ggcacaacgc
      901 cgagtccttc cgcctcaatt gcatttatca gagcgtcgta gtgtttcgtt gtcttgctga
      961 caacctgggg cctcatcagc aacaggccga cggttgattg aggatcaagt gcggggctac
     1021 ccggtcgcga caagtaccat ctgcgatatt cagcgaacga ttcaaatagt ttcggcgccg
     1081 acgggtgata gatggcaact gaaggaacgt gttcaggctg tggaatccga actctgctct
     1141 ttagttttgc atccggcaca tagaccttaa gcgcgtagag caacatcgat tggatgtttg
     1201 cgggcgttgg ttgaaggaaa taacagaaca gatagaggta atgctttaca tctgtgagag
     1261 cgcccgcagt tggaacaaac ttaagaatgc cgggtaatcg atccgcaagt ttcaaatact
     1321 ggctatgtcc gcgattatta gatcgaccac gtgccgcctg tttaccaacc catgaaccaa
     1381 ctgagctgag taacctgagc ggatgttttg ataccgaagc ctccgcgttt ttagtttcac
     1441 tactggcttt tccgcttagc gagttgacat tcaacttgcc catccgggtc tgacgcatta
     1501 actcaggcat gcagttgatt acgatgactg cgttatgttg ctgctgataa cgactcaaag
     1561 cgtctaacaa acgtgaagca ttttccccat ccatgacgtg gataacgaaa acgacgttcg
     1621 ccttttgcag atcttcatcc acactttccc attcagcatc gcttagaggc gccccaaagt
     1681 tgtaagcagc aacacgcaga cccagcttgt gaacgcggtt tagctcccgc tccgcatctt
     1741 tcagcggcga caacaaactc gacccaacgt atgcgacagt gatgttcatt gagactagat
     1801 agttccaagt ttcgagttcc aagtctcagg tttcaacttg aaactcaaaa cctgaaaccc
     1861 gaaaccatct tcaggctacc ccttccaact gatcctctag acttcgacta atttccctca
     1921 acttatccaa cgctgacgct tcagcgtccc agtagccacg accattggct tccaacaagc
     1981 gtctcaccag cgaatgtgcg gagtggggat tcaaatcgcg gagccgttca agcattgttt
     2041 catcgaacaa gaacgtgttt gctacttcgg agtaaatcca atcgtcaaca gcgtcggccg
     2101 ttgcactcca gccaaatgta ttcgacacgt ggttctcgat ttccgccacg cctcggaagc
     2161 cgtgcttcaa cattccttcg taccatttcg ggttaagcgt tttcgcgcgc gactccaatc
     2221 gaacagtctc ttctaacgat cgaatcttca catcgcgcga aaggct
//
LOCUS       DATCGC010001358         2187 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_53792, whole genome shotgun sequence.
ACCESSION   DATCGC010001358 DATCGC010000000
VERSION     DATCGC010001358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2187
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53792"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..405)
                     /locus_tag="VIJ87_13100"
     CDS             complement(<1..405)
                     /locus_tag="VIJ87_13100"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY5445378.1"
                     /translation="MRTILQAENLEKVYRIGKVDVPALRGVSLEVQEGEFLAIMGPSG
                     CGKSTMLHLLGGLLTPTSGRIVIDGEDITAASDAKRTAVRRKKIGFVFQRFNLFPTLT
                     AEGNLRLAERIHGNGGGDPSLRREVLKLLGLED"
     gene            complement(575..1627)
                     /locus_tag="VIJ87_13105"
     CDS             complement(575..1627)
                     /locus_tag="VIJ87_13105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445379.1"
                     /translation="MLKYINARVAVFRLLLVLGSVMLALSTTGCGLFGTHKKVQIPPL
                     LPLKNAEKDQLIQEINRLAAVKSIHGKVDIQFEDTSFASFGLAEKYRQVDGNLTLQRP
                     GNIYLTLSFTIVEIAQMASDGEHFAVAVLQGDEKYKRFVKGTNNAEYPKIDATIDPKA
                     KNKNQEKGEKATVSALSNLRPQHLTDAFMIRAIDLNSGLIYSKSEFFQEEADTRLRAK
                     SGARVMRGYYLLEEFSAPKDGEVQVLRRFWFDRVDKVHLARLQTFDLKGEIITDVSYF
                     NEKPIGSENTVTMASRIELTRPKDQYKISLSYQDPATVELNKEYRPAAFVLQNKWGLT
                     EVDLDAEKSKKLTANQ"
     gene            complement(1750..2178)
                     /locus_tag="VIJ87_13110"
     CDS             complement(1750..2178)
                     /locus_tag="VIJ87_13110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445380.1"
                     /translation="MIELLTEFANSLTWRSALIGVLIFLVTFAVNLAIVSFILVRIPA
                     DYFKNNHKTEFWSGPRPALRALGIIGKNILGVLLVALGVVLSIPGVPGQGLLTILLGI
                     MLLDFPGKRTLERKLLNRPEIVKTINKLRQRFDRPALELD"
BASE COUNT          571 a          579 c          464 g          573 t
ORIGIN      
        1 atcttcaagt cccaggagct tcaagacttc tcggcgcagc gagggatccc ctcccccgtt
       61 gccatgaatt cgctccgcta gtcggagatt tccttcagcc gttagcgtgg gaaatagatt
      121 gaatctttga aaaacaaacc cgattttctt tcgtcgaact gctgtccgtt tagcatctga
      181 cgccgcagta atatcctcgc cgtcgataac aatccggccg ctcgtaggtg tgagaagccc
      241 acctaataaa tgaagcattg tggattttcc gcagcccgaa ggccccatga tggcaagaaa
      301 ctcaccctct tgtacttcga gcgagacacc acgaagggcg ggcacgtcca ccttgcctat
      361 gcgatagacc ttttccagat tttcagcttg tagaattgtt cgcatttaaa ccgtcgcgtc
      421 cagttgtggt agtcaattcg cagtttttaa taaggtccag acgaaatagc gggactaatc
      481 ttccttagta gagcctatac aaaaactgga tgccagaatc aaacgacaga tgttaataca
      541 tctacgccgc tgatatctac catccacaga tgatctattg atttgcagtt agcttcttgc
      601 tcttctcggc gtcaagatcg acttcggtta acccccactt gttttgcaaa acaaatgccg
      661 ctggtcggta ctccttattc aactcaaccg ttgccgggtc ttgatagctc agactaatct
      721 tgtattgatc ttttggcctt gtcagttcga tccgactggc catggtaaca gtgttctcgc
      781 tcccgattgg tttctcgttg aagtacgaca cgtcggtaat gatttcgccc ttcagatcaa
      841 atgtctgtag acgcgccaga tggactttat cgactcgatc aaaccaaaac cgtcgcagga
      901 cctggacctc gccatccttc ggcgctgaga attcttcgag caagtaatag ccgcgcatca
      961 cacgggcacc actcttagct cgcagtcgcg tatcagcctc ttcctgaaag aattcactct
     1021 tcgagtagat caacccacta ttcaggtcga tggcccggat catgaacgca tccgtcaaat
     1081 gttgagggcg aagatttgaa agcgcactga ctgtcgcctt ctcgcccttt tcctgattct
     1141 tattctttgc ctttggatca atggtagcgt cgatcttcgg atactcagcg ttattcgttc
     1201 ccttcacaaa acgcttgtac ttctcatcgc cttgcaacac tgccacagcg aagtgctcac
     1261 catcagaagc catttgcgca atttcgacga tcgtaaacga caacgttaga taaatatttc
     1321 cagggcgttg caacgtaaga tttccatcta cctgccggta cttctctgcg agaccgaaag
     1381 aagcaaaaga agtatcttca aactgaatat caactttgcc gtgaatagac ttcaccgcag
     1441 ccagacggtt tatttcctgt atcagttgat ccttttcagc atttttgagc ggaagtaacg
     1501 gagggatctg aacttttttg tgagtgccga atagaccaca gcctgtcgtg cttagcgcta
     1561 gcatcactga acccaacact agcagcaatc ggaacacagc aactctggcg ttgatatatt
     1621 tgagcattaa acgagcctta gggcgcaaac gatacgtcga acgccaatga atcgcaaagt
     1681 tgggcttcaa cctaacaaac aagacttttt attgtcaacg aaacggtttt cccaacgtac
     1741 cgcttagact caatccagtt cgagcgccgg tctgtcgaat cgctggcgca atttatttat
     1801 cgtcttaact atctcaggtc tatttaacaa cttccgttcc aaagtcctct tgccgggaaa
     1861 gtccagcaac atgatcccca acagtatcgt taacaatccc tggccgggga ctcccggtat
     1921 cgataacaca actcctagcg caaccaacaa tacacccaga atgttcttac ctatgatccc
     1981 gagagcacgc agtgcgggac gaggaccaga ccagaattct gtcttgtgat tgttcttgaa
     2041 atagtccgcc ggaattcgga cgaggataaa cgaaacgata gcaaggttga ccgcaaaagt
     2101 gacgagaaat atcagtacgc cgataagtgc actgcgccag gttaatgaat tcgcaaactc
     2161 tgttaacaac tcaatcattt atcaact
//
LOCUS       DATCGC010001359         1188 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_53805, whole genome shotgun sequence.
ACCESSION   DATCGC010001359 DATCGC010000000
VERSION     DATCGC010001359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1188)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1188)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1188
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53805"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            94..264
                     /locus_tag="VIJ87_13115"
     CDS             94..264
                     /locus_tag="VIJ87_13115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445381.1"
                     /translation="MQASIVWGPPGNDIHQKLNEVLANVPQGMYIHEVQMQVDAKGIL
                     YYTVLFGEVPVS"
     gene            280..585
                     /locus_tag="VIJ87_13120"
     CDS             280..585
                     /locus_tag="VIJ87_13120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445382.1"
                     /translation="MAEARYEIYVPYPSVVSSAAMAYAKTELPKAVISTENGRQVYTD
                     MGQENFSVVHVIAEDQPFTDSTVKQIAAFVADHMQENIMVSKAGKSGLNVWTIPSPS"
     gene            complement(922..>1188)
                     /locus_tag="VIJ87_13125"
     CDS             complement(922..>1188)
                     /locus_tag="VIJ87_13125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445383.1"
                     /translation="PAAETGVSQDAANAGIGPSGESQAAPPAGNVESDVPTQEEQEKE
                     AAEEADDEKKSDSDDDGDSADEKADEKAASKRRGGKSTGQSKAA"
BASE COUNT          271 a          314 c          294 g          309 t
ORIGIN      
        1 tcgctgacaa cagccgtcac gttatcgttc acatcgacgc tatggagcgc ctgatggcct
       61 ctatggctga gcgtatctac gaggcgatgc gtgatgcaag ctagtatcgt gtggggaccc
      121 ccggggaacg acatacatca gaaactcaat gaggttctgg ctaacgttcc tcagggcatg
      181 tatatccatg aggtacaaat gcaagtagat gccaagggaa tcctttacta caccgtcctg
      241 tttggggaag ttcctgtctc ctgacacaga atagatagga tggcagaagc acgctacgaa
      301 atctatgtgc cgtatccctc agtagtatcc tcagccgcta tggcatacgc caagactgag
      361 ttacctaaag ccgtgatatc aactgagaac ggtcgccagg tatacactga catgggccag
      421 gagaatttct ctgtggtcca tgtcatcgct gaggatcagc cttttacgga ctccacagtc
      481 aagcaaatag cggcctttgt cgctgaccat atgcaggaga atatcatggt cagtaaggcc
      541 ggaaagtcag gtctaaatgt ctggactatc ccctcgccat cgtaggcttt tcgctgtagg
      601 cgctctctta gtctcactgt ttaccacgct actcggtctg tatctaggta tactgtggct
      661 tatctcgttc gtatacgttg aggcattggt catcagtgcc atttatctat accttgatag
      721 gaacagatga gtccctggtt tagttatagc ggcatagatc gtctgaatca gcaccctatg
      781 ccagttgaag ggccatggct tgtagcattc ggcgcagagc attgcagacg catttacttc
      841 tacaattggc acaagccaac aaaggaaaag gctcgccaat ggcgagcctc atcctgatac
      901 cctggttgtc ttgagcgtaa gttatgcagc cttagactga ccggttgact taccgccacg
      961 acgcttgcta gcagcctttt cgtctgcctt ttcgtcggcg ctgtcaccgt catcatcgga
     1021 gtcagacttc ttttcgtcgt ctgcttcctc agcggcttcc ttttcctgct cttcctgagt
     1081 cggaacatca gactcaacgt taccggcagg cggtgcagcc tgcgactcgc ccgatgggcc
     1141 aatacctgca ttagctgcat cctgagatac acctgtttca gcagcagg
//
LOCUS       DATCGC010001360         1041 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_252240, whole genome shotgun sequence.
ACCESSION   DATCGC010001360 DATCGC010000000
VERSION     DATCGC010001360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1041)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1041)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1041
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252240"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            112..>1041
                     /locus_tag="VIJ87_13130"
     CDS             112..>1041
                     /locus_tag="VIJ87_13130"
                     /inference="COORDINATES: protein motif:HMM:NF012385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY5445384.1"
                     /translation="MTTPALVKGTVLVVDDDDAVRSGLYWALNSDYQVLQASSREEAC
                     ALINDEEIEVVISDLHLPPHVDDIAEGLALIDVARSQDPPLQVVVITGSDSKRAALEA
                     VRRGAYGFFEKPLDPGELLHIVSQAARMRLLEIENRRLRSELSRPPGFVHLLGASQAL
                     EKILKQARSVAATSATVLLTGENGTGKEMLARAIHEESPRASGPFVAVSCAALPETLI
                     ESELFGHEKGAFTNATQTRKGRFELANGGTLMLDEIGDLTPAVQVKLLRVLQERSFER
                     VGGNKTLTVDIRLIAATNRDLEKEVAEGRFRQDL"
BASE COUNT          234 a          248 c          301 g          258 t
ORIGIN      
        1 ggcaaacctt tcttgagcgt tagaagttac gccagttcct cttgcggttc cctgcccagc
       61 attaattccg tgagcggctt tgtttgttca gttcggtagt tgaatttagc tatgactact
      121 ccagcgctag tgaaggggac cgttctggtc gtcgatgacg acgatgctgt gcgcagtggt
      181 ctctactggg cgctcaattc cgactaccag gtattacagg cgtcatcacg cgaagaagct
      241 tgcgcgctaa ttaacgatga agaaatcgaa gtcgttataa gcgatctaca cctgccacct
      301 cacgtcgatg acattgctga aggacttgcg ctaatagacg ttgctcgatc ccaggatccg
      361 ccgcttcagg tggttgtaat tactggcagt gattcgaagc gtgcggcgct tgaagcggtg
      421 cgacgtggcg cttatggatt ctttgagaag ccgctcgatc ccggtgagtt gttgcacatc
      481 gtcagtcagg ccgcacgaat gcggttgctg gaaattgaga atcgacgtct acgatctgag
      541 ctttcacgtc cgcccggttt tgttcacttg ctcggcgcga gtcaggcgct tgaaaaaatc
      601 ttaaagcagg cgcggtccgt agctgcaaca agcgccacgg ttctgttgac tggcgaaaac
      661 ggtaccggga aggaaatgtt ggcccgtgcg attcatgagg agagtccacg ggcgtcgggg
      721 cctttcgtcg cagtcagttg cgcagcctta ccagagacct taatcgagtc ggaattgttt
      781 gggcacgaga agggcgcgtt tactaacgct acgcaaactc gcaaaggtcg atttgagttg
      841 gctaacggcg gtacgctgat gctggatgag attggcgact taacaccagc agtacaagta
      901 aaacttttgc gagtgttgca ggagcgctca tttgaacgag ttggcggaaa taaaactctt
      961 accgtcgata tccgtttgat cgcggcaacc aatcgtgact tggaaaaaga ggttgctgaa
     1021 ggacgcttcc gtcaggatct g
//
LOCUS       DATCGC010001361         2520 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_22860, whole genome shotgun sequence.
ACCESSION   DATCGC010001361 DATCGC010000000
VERSION     DATCGC010001361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2520
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22860"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..412)
                     /locus_tag="VIJ87_13135"
     CDS             complement(<1..412)
                     /locus_tag="VIJ87_13135"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF-type sigma factor"
                     /protein_id="HEY5445385.1"
                     /translation="MSTPDGVTQLLVDWSKGDQAALERLMPLVYSELRRLATNYLRKE
                     RQGHTLQPTALVNEAYLKLVDQRNAKWQNRAQFFGISAQLMRRILVDHARQHQAAKRG
                     GVDQQRLSITSAEGLMKQSEVDLLAVNEALDELTK"
     gene            607..1050
                     /locus_tag="VIJ87_13140"
     CDS             607..1050
                     /locus_tag="VIJ87_13140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445386.1"
                     /translation="MKKHIYFHFIAAILASVLGVTAQAQSRSRQQLRVSVPFAFNVGN
                     KMLPAGEYRLSVVNPSSDRSVLQIASLNGKSTMMVRTTDISGWPTSKAKLTFRHYGEQ
                     YFLAQVWMASDATGFATPNSNAEKALRRQLGKTAKDVDLVAVNAR"
     gene            1577..>2520
                     /locus_tag="VIJ87_13145"
     CDS             1577..>2520
                     /locus_tag="VIJ87_13145"
                     /inference="COORDINATES: protein motif:HMM:NF013056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015205 - nucleobase transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HEY5445387.1"
                     /translation="MTTTDAKPNIRTEAIAGITTFFTMAYIVVVNPAILSTPGTGMSF
                     SGVLTATVVVCFVMTLLMGVYAKLPFAVAPGMGLNAFFTFTIILTQKVWWQTALGIVF
                     WAGILFFLISITPIRETIAKAIPTELRIGTAAGIGIFLTFIGLKNSGLIASDPVTFVK
                     LGLLGREALLTIVGLVITLILVIRRSVFSFLAGIFIVTLIALALGMIKAPEHLLSAPD
                     FKTVFLKLDILGALKLSLLPAIIAILFTDLFDSISTFIGVAHAADLLDEQGNPRNLRQ
                     GLIVDALATLGAGVAGTSSGTAYIESIAGINVGGRTGLT"
BASE COUNT          561 a          691 c          642 g          626 t
ORIGIN      
        1 tttttgtgag ctcgtccaat gcttcgttca cggccaataa atcaacttcc gattgcttca
       61 tcaatccttc ggcactcgta atcgaaagcc tctgttgatc cacgccacca cgttttgcag
      121 cctgatgttg acgggcatga tccacaagaa tccggcgcat cagttgagca gaaatcccaa
      181 aaaactgggc gcggttctgc catttcgcgt ttcgctggtc gacaagtttc aggtacgcct
      241 cgttaacaag cgcagttggt tgcaacgtat ggccctgccg ttccttgcgc aggtagttgg
      301 tcgcaagtcg acggagctcg ctgtaaacca agggcatcag acgttcgaga gctgcctggt
      361 cgcctttact ccaatcaacc aaaagctggg ttacgccgtc tggcgtggac attcgctgtg
      421 ctccggactt cggtaggaat gggctcggaa attctacaac aaataatttg gccacgtgag
      481 ggaatcgccc tcgaacttcc gcgttagtaa gcgagaggca aaaaagacgg tcgcatttgc
      541 ctgcaccaag cctcggttga aatgactttg cagcgaccgc aaacattcga aaagaaagag
      601 gtcataatga aaaagcatat ctacttccac ttcatcgcgg cgattctggc cagtgttctc
      661 ggcgtcacgg cccaagcgca atcaaggagc cgtcaacaat tgcgagtgag cgttccattc
      721 gcattcaacg tgggcaacaa gatgttaccg gcaggtgagt accggctcag cgtggtcaac
      781 ccttcgtctg atcgaagcgt actccaaata gccagtctca atggcaaatc cacgatgatg
      841 gttcgaacaa cggatatctc cggctggccg acatcgaaag ctaaacttac cttccgtcac
      901 tacggcgaac agtatttcct tgcgcaggtc tggatggcgt ccgacgcaac tggtttcgcc
      961 actccaaatt cgaacgctga aaaagcacta cgccgccaac tcggtaaaac tgcgaaggac
     1021 gtcgacctcg tagccgtgaa tgctcgataa cgaactcact gagagacttc agctggcaga
     1081 agttggggaa ctcctggccg agctgataag agcgacgacc cgaggcgata gagcttcggg
     1141 tcgtcgttgt ttgtatcggc ttttgatcca catcagaaaa gtgaagggcg agaaggacgc
     1201 ctcagtgcgt cgaacacgct gtgaagagtg ggccgggaac gtctcagtgt gtcgaacaag
     1261 ctgggaaggg tggcaagcgg aaactaggac gtctcgccat agtaatactt agcgcgcccc
     1321 cgctgagtcg ccatatgaga atctcggctg gtccaagtga acctcagcgg gggcgctctc
     1381 agggtcaata tcgtgagccg tcctagtttc cgcttacccc cttcccagct tgttcaatcc
     1441 actgacgcgt ccttgccacg ctcttcctaa cttcttcttt ctagtgcggc gattgtcgtt
     1501 cgcatttcta gacttggcgc ttgccgtgtc atagactccc cgactcgtcc attcccctac
     1561 gagttgattc gactctatga caaccaccga cgctaagccc aacattcgta ctgaagcaat
     1621 cgccggcatc accacgttct tcacgatggc ttacatcgtt gtggtgaacc ctgcgattct
     1681 ttccactccc ggcacaggga tgtcgttcag cggcgtatta acggcaaccg ttgtcgtatg
     1741 ttttgtgatg acgttgctga tgggtgttta cgcgaagttg cctttcgcgg ttgcgccggg
     1801 catgggcctc aacgccttct tcactttcac aatcatcctt actcagaaag tttggtggca
     1861 aacggcactc ggcattgtct tctgggccgg cattctattt ttcttgatct cgataacgcc
     1921 gattcgcgaa acgatcgcca aggcgattcc cactgaactt agaatcggga ctgccgcagg
     1981 tatcggaatc tttctcacgt tcatcggcct taaaaattct ggcttgattg cttctgatcc
     2041 cgtcacgttc gtgaaactcg gactacttgg gagggaagcg ttacttacca tcgtcggcct
     2101 ggtgatcaca ctcatcctgg tgatccggcg tagtgtcttt tcgttccttg ctgggatctt
     2161 catcgtgact ctaatcgccc tggcgctggg aatgatcaaa gccccggaac acttactaag
     2221 cgctcccgat ttcaagacgg tctttctgaa gctcgatatc ttaggtgccc tcaaactttc
     2281 actgctgccc gcgatcatcg ctatcctctt tacggatttg tttgattcga tttcgacatt
     2341 tatcggcgtt gcgcatgcgg cggacttatt ggacgaacaa ggcaacccgc ggaatcttcg
     2401 acagggattg attgttgatg cactcgcaac actgggcgct ggagtcgctg gcacatcttc
     2461 aggcactgcc tacattgaaa gcatcgccgg catcaatgtt ggcggtagaa cgggtttgac
//
LOCUS       DATCGC010001362         1704 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_22863, whole genome shotgun sequence.
ACCESSION   DATCGC010001362 DATCGC010000000
VERSION     DATCGC010001362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1704
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22863"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            433..1560
                     /locus_tag="VIJ87_13150"
     CDS             433..1560
                     /locus_tag="VIJ87_13150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445388.1"
                     /translation="MRPRILRDVPAQNLAYRFEPDISLPSDLKVDDSTDKFAAVQNDF
                     NTPNRQDAALLRTVVSPDGRRVLALYGTSDEPSSVFRIDLYSSDGQFLRNLIPPSISC
                     VFPDTVTWSPDGSFINFIARRREVPTPSPTPLGATLPEVSGSPVPIPSVAPAFAPVVS
                     FNTEQIYICNRDGYDLKPLSSREGLIYFFFAWAPDGHALVALACKEDEWTAREQQHKE
                     PAGRPRLIELDGKERLLDDGLTEALPVWSPDSSKVATAFDTDVAIYDAATTKPTQARL
                     PLGDQLISASVVYEQRTVVKKVEPPKNSNSKSPSPSPTATPSQSTTTPASFNPIVKVE
                     WPSPERLYFKTAYVRLMPSEAINTFQRWHLLSLSAQAAVLK"
BASE COUNT          415 a          435 c          420 g          434 t
ORIGIN      
        1 ccatagcgtg tggcacagac ttcagtctgt gaagcgtaat tagaagaact gacgcgggga
       61 aagaaataat tttccatttg tcatttgaca ttgttcagtt agtcattgag aagaactccg
      121 atagccgagt agtgagtacc acaatgcagt agcgtgactt gagcgctact cgcgggacca
      181 aatgaccaac tgagaattgt caaatgataa atggaaaatg ttcttgaaat agtctaagaa
      241 gacaggctga agtctgtgcc acacttaaat tgacaagctc tctaagcgat aaatatcatc
      301 atcgcccaca tggggacgga ccgatacctt ttgcttcgca acaggaaaac aacgagctcc
      361 ttaattctca caattctgac cgcgatagtg ttaggcgtca gctgtaaggg cgtcatcgac
      421 cgtcaggatg atgtgcggcc tcgaatcctt cgcgacgtgc cagcacaaaa cctcgcgtat
      481 cgctttgagc cagacatctc attgccatct gacttaaaag tcgatgactc caccgacaag
      541 ttcgctgctg ttcaaaacga cttcaatact ccaaatcgtc aggacgccgc gctgttacgc
      601 acagtagttt cacccgatgg tcgccgcgtc ctcgcgctct atggaacctc ggatgaacca
      661 agctcggttt ttcggatcga tctctattcc tccgacggcc agtttctgcg caacctgatt
      721 ccgccgagta tctcctgtgt ctttcccgat acagtgacat ggtcgcctga tggttcattc
      781 atcaacttca tcgcccgtcg ccgtgaagta ccgactccca gtccaactcc tttgggcgcc
      841 acgttacctg aagttagtgg ctcacccgtt cccataccat cagttgcgcc ggcctttgcg
      901 cctgttgtca gtttcaatac ggaacagatc tacatctgca atcgcgacgg ctacgatcta
      961 aagccgctga gctctcgcga aggactgatt tacttcttct ttgcgtgggc acctgacggt
     1021 catgcgctag ttgctttggc gtgcaaggaa gacgagtgga ctgcgcgtga acagcaacat
     1081 aaggaaccgg ctggtcgtcc gcgtttgatt gaacttgatg gtaaggagcg attgcttgat
     1141 gacgggctga ctgaggcgtt gccggtatgg tcgccggact cgtctaaggt tgcgacagcg
     1201 tttgatactg atgtcgcgat ctatgatgca gctactacca agcccacgca ggctcgtttg
     1261 ccgttgggcg atcaattgat aagtgcgtcg gtggtttatg agcagagaac tgtagtgaag
     1321 aaagtcgagc caccgaagaa cagcaacagt aagtcgccat caccgtcgcc gaccgccacg
     1381 ccgtcacaat ctactacgac acctgcatcg ttcaatccaa tcgttaaggt cgagtggcct
     1441 tcacctgaac gtctctattt caaaaccgca tacgtgcgtc taatgccctc tgaagcaatc
     1501 aatacgtttc agcgttggca tttgttgagt ttaagcgcac aagcggcggt gttgaagtga
     1561 gcttgaaatg atcttcagct cttccgaata gaattctgtc tggaagcttt tctcgaattg
     1621 tgggtttcca ctagtgagaa caaaatccgg gtaatctgtg aaatctgtcg actgatttat
     1681 ccggtcacga gaagtcgttt ttgg
//
LOCUS       DATCGC010001363         2938 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_151778, whole genome shotgun sequence.
ACCESSION   DATCGC010001363 DATCGC010000000
VERSION     DATCGC010001363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2938)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2938)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2938
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151778"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2384)
                     /gene="alaS"
                     /locus_tag="VIJ87_13155"
     CDS             complement(<1..2384)
                     /gene="alaS"
                     /locus_tag="VIJ87_13155"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HEY5445389.1"
                     /translation="MANSLSQLRHAKLADNMTGDEIREAFLKYFEEKGHTRVRSSPLL
                     PANDPTLLFTNAGMNQFKDVFLGQEKREYVRAASSQKCIRAGGKHNDLDEVGKTARHH
                     TFFEMLGNFSFGDYFKKDAIAFAWDLLLNVYGLPLNRLWFSVYKDDDDAAKLWEEIGA
                     PRERILRFGEKDNFWQMGDTGPCGPCSEIHYYMGEDPDDPTKNRPELVNGPGDDTMEI
                     WNLVFMQYERSQNAAGEIVQTDLPKPSVDTGAGLERLAVVLQGVKSNYDTDLIKPIIN
                     FTATLADRNYEPETQEGFAMRVIADHARAAAFAIADGILPGNEGRNYVLRKIMRRAIY
                     QGHHTLQFESAFFNKVTNFIVDQMKESFPELEAHREFIQKMVSLEEERFGSTLTVGLN
                     KLDELFSSTKGAMPEYKALARLYDTFGTPRDLIRVGLEERGFAIEEQQFNSQFDTALQ
                     ELQSAATPEKAEAKAKANPVYAEVAGKVGRSTFKGYATTQVDESRVVSLIKTSEVAAL
                     NEGDEGEVVLDQTPFYAESGGQVGDVGTFTTPTGFALVLDTFSPAQGLIVHKVKVERG
                     TVKVGDRIDAEVDVEKRDATRRNHTATHLMHAALREVLGTHVKQAGSVVAPTYLRFDF
                     SHYQPLTQVEREEIERLVNYHILRNEPVQTDEMAIEEAMRSGAMALFGEKYGEKVRVL
                     SIKGAEGIFSKELCGGTHVRATGDIGLFKITSDESIASGVRRIRAITGIDAYERFRES
                     EVLVDELSSGLRTSRSELPTIISKLQDELKKARREMDELRLKIASGAVGSSANG"
     gene            2567..>2938
                     /locus_tag="VIJ87_13160"
     CDS             2567..>2938
                     /locus_tag="VIJ87_13160"
                     /inference="COORDINATES: protein motif:HMM:NF014668.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RecX family transcriptional regulator"
                     /protein_id="HEY5445390.1"
                     /translation="MRTRKTESTDERRDLTPEEKRRRTFERAVKLIAAKSRSVAELRE
                     RLLQSRQSNKSDVEAVISRLKEYGYLDDERFAFSYATLKVKQRPIGRRRLERDLKFKK
                     VDSAVANEALELVYTETTEEEL"
BASE COUNT          658 a          802 c          743 g          735 t
ORIGIN      
        1 tcgccattag cagacgagcc aaccgcacca ctcgcaatct tcagtcgcaa ctcgtccatc
       61 tcgcgtcttg ccttcttcag ctcgtcctgc agcttgctaa tgattgttgg cagttcactt
      121 ctcgaagttc tcagtccact gctcaactca tctaccagga cttcactctc cctgaatcgc
      181 tcgtaagcat cgatccctgt gatcgctcgt atgcgtctaa cacccgatgc gattgattcg
      241 tcgcttgtga tcttgaagag tcctatgtct ccagtggcgc ggacgtgcgt gccaccacag
      301 agctccttcg agaaaattcc ctccgctcct ttgatcgaaa gcacacggac cttctcgccg
      361 tacttctcgc caaacaatgc catcgcccct gaccgcattg cctcctcgat cgccatctcg
      421 tccgtctgca ccggctcgtt gcgcaggatg tgatagttaa ccagccgttc gatctcttcg
      481 cgctccactt gagttagcgg ctgatagtga gaaaagtcga aacgaagata tgttggagct
      541 acgaccgaac cagcttgctt cacgtgcgta ccaagtacct cacgcagagc cgcgtgcatc
      601 aggtgagtcg ctgtgtgatt acgtcgagtg gcgtcacgtt tctcaacatc aacttctgcg
      661 tcaatcctgt caccaacctt cactgttccg cgttcaacct tgaccttatg gacaatcaaa
      721 ccttgagctg gcgaaaaggt atcgagaaca agcgcaaagc ctgtcggggt tgtaaaggtc
      781 ccgacgtcgc cgacttggcc accactttcc gcgtagaacg gcgtttggtc tagaacgacc
      841 tcgccttcgt ccccttcatt caacgccgct acttcgctgg tcttgatcaa cgatacaact
      901 ctcgactcat cgacctgtgt agttgcgtag cccttgaaag tcgagcgtcc aacctttccg
      961 gcgacctcag cgtacaccgg gtttgccttt gctttcgctt cagccttttc cggtgtcgcg
     1021 gcgctctgta gttcctgaag cgcggtgtca aactgcgagt tgaattgctg ctcctcgata
     1081 gcaaagccac gctcctcaag tccaacccga atcaggtcgc gtggagtgcc aaacgtgtcg
     1141 taaagacgag cgagtgcctt gtattcaggc attgctcctt ttgtcgatga aaacagttcg
     1201 tcgagcttgt tgagaccaac agttaacgtc gatccaaaac gctcctcctc aaggctcacc
     1261 attttctgaa tgaattcacg atgagcttcg agttcgggaa agctttcctt catttggtca
     1321 acgatgaagt ttgtgacctt gttgaagaac gcactttcaa actgaagcgt gtggtgtccc
     1381 tggtaaatgg cacgacgcat gatctttcgc agaacatagt tgcgtccttc gttgcccggc
     1441 aggattccgt cggcaatggc gaaagctgct gcacgcgcat gatccgcgat tacacgcatc
     1501 gcaaaacctt cctgggtttc cggttcgtaa ttgcggtccg ccagcgttgc agtgaaattg
     1561 atgatcggtt taatgagatc cgtatcgtag tttgacttca ccccttgaag aacaactgcg
     1621 aggcgttcga gcccggctcc agtgtcgact gacggtttcg gcaaatcagt ttggactatc
     1681 tcaccagctg cattctggct tcgctcatat tgcatgaaga caaggttcca gatctccatc
     1741 gtgtcgtcgc cagggccatt cactaactcc ggccgatttt tggtcgggtc gtccgggtct
     1801 tcacccatgt agtagtgaat ctcgctacac ggcccacacg gaccggtatc gcccatctgc
     1861 cagaaattgt ctttctcgcc aaagcgcagg atgcgttctc gcggcgctcc gatttcttcc
     1921 cagagcttcg ctgcgtcgtc atcgtctttg taaacgctga accagagtcg attcagcggc
     1981 aggccataaa cgttcagtaa caagtcccat gcaaacgcga ttgcatcctt cttgaaatag
     2041 tcgccaaagg aaaaattgcc gagcatttcg aagaaagtgt gatgtcgagc agttttgcca
     2101 acttcgtcga ggtcattgtg tttgccgccc gcgcggatgc acttctgcga cgaggcggcg
     2161 cggacatact cgcgcttctc ctgtcccagg aagacatcct tgaactgatt catgccggcg
     2221 ttggtaaaca acaacgtcgg atcgttggcg ggcagaagag gagaggaacg cacgcgtgtg
     2281 tgccctttct cctcgaaata tttcagaaat gcttcgcgaa tctcgtcacc agtcatattg
     2341 tcggcgagtt tagcatgccg cagttgagag agagaattag ccacagatga acgcagatga
     2401 acgcagatca gaagaggcct ggaggggacg ccttagcgga ttgaacaagc tgggaagggc
     2461 ggcaagcgga aatcagaacg gtttttttct tatctgtgtt cacctgcgtt catctgtggc
     2521 cgattttcct cttggtttcg gttagggttt ggctgagaat ctaattatga gaacccgcaa
     2581 gaccgaatct acagatgagc ggcgcgacct cacgcctgaa gagaagcgca ggagaacgtt
     2641 tgagcgggcg gttaagttga ttgcagccaa gtcgcgctct gttgccgaac tacgcgaacg
     2701 actattgcag agtcgtcagt caaacaagtc ggacgttgag gctgtgatct cgagacttaa
     2761 agagtatggc tatctcgacg atgaacggtt tgccttcagt tatgcgactt tgaaagtgaa
     2821 acagcgacca attggacgac gtcgacttga gcgcgatctc aaatttaaga aagtggatag
     2881 cgcagttgcc aatgaggcgc tcgaattggt ttacacggaa acaactgaag aggagctt
//
LOCUS       DATCGC010001364         1016 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_321053, whole genome shotgun sequence.
ACCESSION   DATCGC010001364 DATCGC010000000
VERSION     DATCGC010001364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1016)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1016)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1016
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_321053"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            260..>1016
                     /locus_tag="VIJ87_13165"
     CDS             260..>1016
                     /locus_tag="VIJ87_13165"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5445391.1"
                     /translation="MLINVQPRILIVDDELEITEILADLLSEDYDCQKAGSAEQALVR
                     LQQSQFHLVISDITMPGMSGLEMIPHIKALSPNTVVVMISGMQTVESAIGALRLGAFD
                     YLMKPFDLRQVEAVVKRALEHHELIVAKQRYENHLEELVEQRTAELDRALDSLEEAYR
                     STLKALTTALETRDQETHGHSERVVSYSLRLGREYGLNREQMKALEFGSLLHDIGKIG
                     VPDSILRKPAKLTEEEWVVMREHPMHGQQILRGI"
BASE COUNT          258 a          244 c          265 g          249 t
ORIGIN      
        1 cgtacttaat cccttcttgg gacaaatcca cgaacaccga tacttggttg gaatcctgcc
       61 atcgatcgta aacccaatta tttagctaat taccccctgt tgtaaaaacc tgtttgccac
      121 ggctgtggaa atcgtctaga atgatttcgc ccgatttggg cctagggaat cccgacgcct
      181 tcctcaaagt ctttcaataa aactgtagta agtacggagt tcgaactttc cgccgtcctg
      241 tcgatttcag gagaaccaga tgttgattaa cgtgcagccc cgcatattga ttgttgatga
      301 cgaactcgag ataacggaga tcctcgctga cttgcttagc gaggattacg attgccagaa
      361 agctggatct gccgaacagg cattggtgcg tttacagcaa tcccaatttc atttggttat
      421 cagcgacatc acgatgccag gcatgagcgg attggaaatg attccgcaca tcaaagccct
      481 ctcgccaaat accgtcgttg tcatgatcag tggaatgcag accgtcgaaa gtgcaatcgg
      541 agcgctgcgg ctcggtgctt tcgactactt gatgaaaccg ttcgacctta ggcaggttga
      601 ggcagtcgtc aaacgcgcgc ttgagcacca cgagttgatc gttgcgaagc agcgatacga
      661 gaatcatctc gaggagttag tcgaacaacg aacggcagaa ctagaccgag cgttggattc
      721 tctggaggaa gcgtatcgct ccacgctgaa agctttgact acagcattgg agacgcgcga
      781 ccaggaaaca catggtcact ccgagcgcgt ggtcagttac agtttgcgtc ttggtcgtga
      841 gtatggcttg aaccgtgaac agatgaaggc gcttgagttt ggctcgttgt tgcacgatat
      901 cggtaagatt ggtgttcctg attcgattct cagaaaaccg gcaaagctca ctgaagaaga
      961 gtgggtcgta atgcgtgagc acccgatgca cggtcaacag atcctccgtg gaattg
//
LOCUS       DATCGC010001365         1073 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_417845, whole genome shotgun sequence.
ACCESSION   DATCGC010001365 DATCGC010000000
VERSION     DATCGC010001365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1073)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1073)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1073
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_417845"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..261
                     /locus_tag="VIJ87_13170"
     CDS             <1..261
                     /locus_tag="VIJ87_13170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445392.1"
                     /translation="SELNDLFTDFYRDSFFVRLVKGSPDINWVKTTNFCDIGFAARGN
                     QVVVFSALDNLVKGAAGQAIQNMNLMFGLDEKTGLMLVGTNP"
     gene            377..736
                     /locus_tag="VIJ87_13175"
     CDS             377..736
                     /locus_tag="VIJ87_13175"
                     /inference="COORDINATES: protein motif:HMM:NF013734.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445393.1"
                     /translation="MTFTPAPIKAPIEMADLEKIDIRVGTILKVEEVLNSDKLMKLTV
                     SFGDHQRTIIAGIKQERANPKEIEGTQALFVVNLPPRKMRGAVSEGMLFDIGYADGLT
                     PVLAVTEKTTSDGARAG"
     gene            733..>1073
                     /locus_tag="VIJ87_13180"
     CDS             733..>1073
                     /locus_tag="VIJ87_13180"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY5445394.1"
                     /translation="MTLETTTVFTDIAASEEQFQLATYKKMPVAAERGDGVWIYTSDG
                     DKYLDLYGGHAVAGTGHCHPHVVKALREQSEKLLFYSNLVYSETRARAAEKLVGVAPE
                     KLTKAFFCNSGT"
BASE COUNT          283 a          258 c          276 g          256 t
ORIGIN      
        1 tcggagttga atgatctctt tacggatttc tatcgtgatt cattcttcgt aagactggtg
       61 aaaggttcac cagatattaa ctgggtaaag actactaact tctgcgacat cggttttgcc
      121 gcgcgtggta accaagtggt cgtgttctct gcactcgaca atctggtgaa aggtgctgca
      181 ggacaggcca tacagaacat gaacttgatg tttgggctgg atgagaagac tgggttgatg
      241 ctggttggta ctaatccata agtggagatt tccgataaat tttagtttgt cgatgtcatg
      301 gagttggaga cctacacaaa catcagcgcc tatttcagag acgacgacaa actaaagttt
      361 atcggacatt catgctatga ctttcacacc ggctccaatc aaagcgccaa tcgagatggc
      421 ggatcttgaa aagatcgata ttcgtgttgg aacgatcttg aaagtcgaag aagttctaaa
      481 ttccgacaaa ctgatgaagc tcaccgtgtc gttcggtgac catcaacgaa ctatcatcgc
      541 cggcataaaa caggagcgcg caaacccgaa ggagatcgaa ggcactcaag cgttgtttgt
      601 agttaacctg ccgcctcgca aaatgcgcgg tgcagtctct gaaggcatgc tattcgacat
      661 tggttacgca gacggcttaa cacctgtgct ggccgtcacc gagaaaacaa cttccgacgg
      721 agcaagagca ggatgacttt ggaaactacg accgtgttca ctgatatcgc agccagcgag
      781 gaacagtttc aactcgccac ttacaagaag atgccggttg cagccgaacg cggtgacggc
      841 gtctggatct acaccagcga cggcgacaag tacctcgatc tttacggggg ccacgctgtt
      901 gctggaacag gacattgcca tcctcacgtg gtgaaggccc ttcgcgagca gtccgaaaaa
      961 ctcttgttct attccaatct cgtctattcg gagacgcggg cccgtgcagc agagaaactc
     1021 gtcggtgtcg ccccggagaa attgaccaag gctttcttct gtaactccgg aac
//
LOCUS       DATCGC010001366         2336 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_453777, whole genome shotgun sequence.
ACCESSION   DATCGC010001366 DATCGC010000000
VERSION     DATCGC010001366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2336)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2336)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2336
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_453777"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..269)
                     /gene="rplN"
                     /locus_tag="VIJ87_13185"
     CDS             complement(<1..269)
                     /gene="rplN"
                     /locus_tag="VIJ87_13185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003042233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HEY5445395.1"
                     /translation="MIQMQTSLEVADNSGARRVEMIMPIGGSTGKIASLGDRIKVTVK
                     EASPDGTIKKGTVQDAVIVRTRKEVRRADGTYVRFDQNAAVLIKE"
     gene            complement(337..654)
                     /gene="rpsQ"
                     /locus_tag="VIJ87_13190"
     CDS             complement(337..654)
                     /gene="rpsQ"
                     /locus_tag="VIJ87_13190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016660790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HEY5445396.1"
                     /translation="MAENQENITPATDETKATVAAVSRPHRSEKVGTVASDKMTKTVV
                     VRVDRSVKHRKYRRYVRKTSKFMAHDELGATVGDKVRIVETRPLSARKRWRVIEIVQK
                     AAK"
     gene            complement(704..910)
                     /gene="rpmC"
                     /locus_tag="VIJ87_13195"
     CDS             complement(704..910)
                     /gene="rpmC"
                     /locus_tag="VIJ87_13195"
                     /inference="COORDINATES: protein motif:HMM:NF013027.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HEY5445397.1"
                     /translation="MKRREELDKYRELGADEIRAETARLRESLFRLKFKLALGEVDAV
                     KRIRQEKKSLARLETLARQTSTGK"
     gene            complement(913..1341)
                     /gene="rplP"
                     /locus_tag="VIJ87_13200"
     CDS             complement(913..1341)
                     /gene="rplP"
                     /locus_tag="VIJ87_13200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001829782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HEY5445398.1"
                     /translation="MLMPKKVKHRKQMRGRMTGVATRGSEISFGEYGLKCLEPAWITD
                     RQIEAARIAMTRHIKRGGKIWIRMFPDKPVTKKPAETRMGKGKGAPEYWVAVVKPGRI
                     LYEIEGVDEKTARDAMRLAAQKLPIKTKFVTRADQEGGAI"
     gene            complement(1444..2211)
                     /gene="rpsC"
                     /locus_tag="VIJ87_13205"
     CDS             complement(1444..2211)
                     /gene="rpsC"
                     /locus_tag="VIJ87_13205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004185240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HEY5445399.1"
                     /translation="MGQKVHPYGFRVGYNKDWHSHWFAKKQFGEFLLEDLRLKRDLKQ
                     RFAGAGVSHVDIERAANRLKIIIYTSRPGIIIGRKGAEIDKLKSDLSSKTGREVLVSI
                     QEIHKPELNAQLQAEKIAAQLEKRIAFRRAMRKAVEESLRFGAQGIKVKVSGRLNGAE
                     IARSEWHLQGQLPLHTLRADIDYGLAEARTTFGQIGVKVWIYRGEILDPKAAMARGTG
                     SDPINETRVGERERRPRTRREREGGAPDGRRPRGDNQ"
BASE COUNT          475 a          709 c          518 g          634 t
ORIGIN      
        1 tcttctttga ttaagaccgc ggcattctgg tcaaatctca cgtacgtgcc atccgcacgt
       61 cgaacttctt ttcgagttcg cacaatcact gcgtcttgca cggtcccctt cttaatcgtt
      121 ccatcaggtg aagcctcttt aacagtcacc ttgatacgat cacccaagct cgcgatcttt
      181 ccagtcgatc ccccgatcgg cataatcatc tctacgcgac gggctcctga attgtcggca
      241 acctccaaag aggtctgcat ctgaatcact gtcgttacct ccggttttgg cctttggcct
      301 tgagcttggt cctaatacaa accaaagccc aaatctttac ttagccgctt tctgaactat
      361 ctcaattacg cgccatcgct tgcgcgccga aagcgggcgc gtctctacga ttcgcacctt
      421 atcgccaacc gtagcaccga gctcgtcatg agccatgaac ttcgatgttt tacgaacata
      481 acgacgatat tttctgtgct tgaccgatcg atcgacacga acgaccaccg tctttgtcat
      541 cttgtctgaa gcaacagtgc cgactttctc tgaacgatgc ggtcgactaa ctgcagccac
      601 ggtcgcttta gtttcatctg ttgcgggcgt aatgttttct tgattctctg ccattcttct
      661 cacacacttt cggccagcgc ttcaaacggg actggccttc tgtttactta cctgtggacg
      721 tttgtcgcgc gagcgtttcc agacgcgcca acgatttctt ttcctgacga atacgtttca
      781 ccgcatcgac ctcgccaagg gccagcttga acttcaaccg aaacaaagac tcgcgtaagc
      841 gtgcagtttc agcacgaatt tcgtccgcgc ccagctcccg gtacttatct aattcctcac
      901 gtcgtttcat tactagatcg cgcccccttc ttgatcagca cgagtcacaa acttcgtttt
      961 gatcggaagt ttctgagcgg caagacgcat agcatctcgc gctgtcttct cgtcgacccc
     1021 ttcaatctca tacaaaatgc ggcccggctt tacgactgca acccaatact ctggtgcgcc
     1081 tttgcctttg cccatacgag tttcagccgg cttcttggtc accggcttat ccggaaacat
     1141 gcgaatccaa atcttgccgc cgcgcttgat atgtcgcgtc atcgcgatac gagcggcttc
     1201 aatttgacga tcagttatcc acgcgggttc caaacacttc aaaccgtact caccgaagct
     1261 gatctcgctg ccacgagttg cgacgccggt catgcgaccc cgcatctgct ttcggtgctt
     1321 aacttttttc ggcatcaaca tgatgtttca catatttcag attgccgatt gcagattgca
     1381 gattgaaaaa acttcacgcc ttcggcgcca atctgaaatc tgaaatctga gatctgaaat
     1441 ctcctattgg ttatctcccc tgggccttct tccatccggc gctccgcctt cacgttcacg
     1501 cctggtgcgt ggacgacgtt cacgttcgcc tactcgcgtt tcgttgatcg gatccgatcc
     1561 ggtaccgcga gccatcgccg ccttgggatc gagaatctca ccacggtaaa tccagacctt
     1621 gacgccaatc tgaccaaatg ttgttcgggc ttcagccaga ccgtagtcga tatcagcacg
     1681 aagcgtgtgc agcgggagct ggccttgaag gtgccactcg ctgcgtgcga tttcggctcc
     1741 gttcaaacga ccactgacct tgaccttgat tccctgggcg ccaaaacgaa gcgactcctc
     1801 gacggctttt cgcattgccc gacgaaacgc gatgcgcttc tcgagctgtg cggcaatctt
     1861 ctcggcctgc aactgcgcgt tcaactcagg cttgtgaatc tcctggattg ataccaatac
     1921 ttcccgaccg gtcttcgacg acaggtcact cttgagcttg tcgatctcag cgcccttgcg
     1981 accgatgatg atcccgggtc gcgaagtgta gatgatgatc ttaagacggt ttgccgcgcg
     2041 ctcgatatca acgtgagaga cgcctgctcc ggcaaagcgt tgtttcagat cacgcttaag
     2101 cctgaggtct tccagcaaaa actcgccgaa ctgcttcttc gcaaaccagt gcgagtgcca
     2161 atctttgttg tatccgaccc taaagccgta tggatgaact ttctgtccca tattttttac
     2221 tggagcacag gcgtccggcc tgcctttctc cgttactgcc tttccaattc ctcgttagta
     2281 tccagctgct tctcatctgc cggcttcgat tcgttcaatg cctcaggtgt ttgtgt
//
LOCUS       DATCGC010001367         3378 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_187295, whole genome shotgun sequence.
ACCESSION   DATCGC010001367 DATCGC010000000
VERSION     DATCGC010001367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3378)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3378)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3378
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187295"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..685
                     /locus_tag="VIJ87_13210"
     CDS             <1..685
                     /locus_tag="VIJ87_13210"
                     /inference="COORDINATES: protein motif:HMM:NF014661.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YcaO-like family protein"
                     /protein_id="HEY5445400.1"
                     /translation="EASIQALLELIERDIWSFEFVRGASKLVDPASLPDAVREIAERA
                     ERNGLQLKVRTVPNDYGMPFFAAFVFDLNNPSRKSFNGGWACDLDRDRALVRAVTEAA
                     QSRVAFIHGGRKVPTTVPPAISFEEQAGEAKLVRQHMAGVSDARQQTLLTDIPDLAVE
                     GTLQEKLSAVIERLRRVLTVPIYRVAFTSTESPLQVVRLVVPLLENFKETRMRLGRRL
                     KAALEAEAA"
     gene            742..3183
                     /gene="hypF"
                     /locus_tag="VIJ87_13215"
     CDS             742..3183
                     /gene="hypF"
                     /locus_tag="VIJ87_13215"
                     /EC_number="6.1.2.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003998 - acylphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HEY5445401.1"
                     /translation="MEIRQTVEIRVRGTVQGVGFRPTVWRLACAEGLVGEVLNDGFGV
                     LIRTTGDTVAISQFLTRLHNEAPPLSQIEDVETHVLSLRDFEGFRIAESVAGENCTRV
                     TPDAATCAACRAEVLDPKERRYGYPFANCTHCGPRFSIVKDVPYDRVNTTMVDFPMCA
                     SCKSEYLQPADRRFHAQPIACPDCGPSIWLEGTDASRPFNSTANSTANSTANSKTTAL
                     DSAIELIKRGAVVAIRGLGGFHLACDATNAGAVQQLRQRKHRYGKPFALMARDLETIR
                     RYSNLNEAEADLLQSPEAPIVLLPANGPEALPDGIAPGLNTVGFMLPYTPLHLLITRR
                     IDGPLVMTSGNVSDEPQVTSLDTARIGLRGIADAMLMHNREIANRIDDSVVRIVGGKP
                     TVMRRARGYAPSAVPLPSGFEDAPDLLSFGGELKSTFCVLKDGAAILSQHQGDLEDIS
                     TFEDYQKNLHLYSRIYDHRPSVLVADMHPEYLSAKLAKQTAQTESLPLVEVQHHHAHI
                     ASCMVENGVALDAPPVLGIAFDGLGFGEDGTFWGGEFLLADYRGYRRIASLKPVAMIG
                     GFQAIREPWRNTYAHLVAGIGWPDFVDRFSSLDLYRYLINKPLPTIDRMLKTGLNVPL
                     ASSCGRLFDAVAAALGLCADKAIFEGQGAMELEALVAPGQTSAEVPYPFALVEQPGGI
                     IHLESSPMWLALLEDLSQKTAAARIAARFHNGLARGIRNMVALIRETSDNATSVNTIA
                     LSGGCFQNKLLLEEVVRLLNADGLTCLLHAKVPTNDGGLALGQAAIAAARNIERSLEC
                     GGLTPLCSPSSGIKN"
BASE COUNT          761 a          860 c          958 g          799 t
ORIGIN      
        1 agaagcaagt attcaagcct tactagaact gatcgagcgc gacatctggt cgttcgagtt
       61 tgttcgaggc gcttcaaagt tagtcgatcc ggcgagtctg ccggatgctg tgcgcgaaat
      121 tgccgagcgc gctgaacgaa acggtctaca gttaaaagtt cgcacggttc ctaacgacta
      181 cggtatgccg ttcttcgccg cgttcgtgtt tgatttgaac aatcccagcc gcaagtcatt
      241 caacggcgga tgggcatgtg atctagaccg tgaccgtgcg cttgtgcgcg ctgttactga
      301 ggcagcgcaa agccgagtag ccttcattca cggcggaaga aaagtcccaa cgacggtacc
      361 tccggccatc tcatttgagg agcaagcagg agaagcaaaa ctcgttcggc aacacatggc
      421 aggtgtgagc gatgcgcgtc agcaaacgtt gctgactgac attcccgatc tcgctgttga
      481 aggcaccctg caagagaagc ttagtgctgt cattgaacgt ttgcgtcgcg tattgacagt
      541 accaatctac cgggtcgcgt ttacgtcgac tgaatcgccg ttgcaagtag ttcgcctggt
      601 tgtgcctttg ttggaaaact tcaaggagac ccggatgcgc ttgggccgtc gactaaaggc
      661 ggctttagaa gccgaagcag cgtgagtcca caacgtagtc aaagtattca gaagatcagc
      721 gggtagtaag gggtaagttc tatggagatt cggcagactg tcgaaatccg agttcgcgga
      781 acggttcagg gggttggctt tcggccgacg gtttggcgcc tggcctgcgc cgaggggcta
      841 gttggcgaag ttcttaatga cggcttcggt gtattgatcc gaacaactgg cgacactgtt
      901 gccatctcac agtttctgac ccggttacat aacgaagcac ctccgttgtc gcagatcgag
      961 gatgtcgaaa cacacgtttt gagtctccgt gactttgaag gctttcgaat tgcggaaagt
     1021 gtagccggcg agaactgtac tcgtgtcact cccgatgcag ctacttgcgc ggcttgtcgt
     1081 gcggaagtgt tggatccaaa ggaacggcgc tacggttatc ccttcgcgaa ctgtacccat
     1141 tgtggtcccc gcttttccat cgtgaaggat gttccctacg atcgagtcaa cacgacgatg
     1201 gtagatttcc cgatgtgcgc gtcgtgcaag agtgagtatc tacaacctgc ggaccgtcgt
     1261 ttccacgcgc aaccgattgc ctgtccggac tgtggaccat caatttggct ggaagggacg
     1321 gacgccagca ggccattcaa ctcaacagcc aactcaacag ccaactcaac agccaattca
     1381 aaaactacag ctcttgattc cgctatcgaa ctgataaaga gaggtgcggt cgtagccatt
     1441 cgcgggttgg gcggctttca cttggcttgt gatgctacca atgcaggcgc tgtccagcag
     1501 ttacgacagc gtaaacatcg gtatggtaaa ccatttgcgc tgatggcccg tgatctcgag
     1561 actattcgca ggtactccaa cttgaatgaa gctgaggctg acttgttaca gagtcccgaa
     1621 gcgcccatcg tattgcttcc ggcgaatggt ccagaggcgt taccggatgg aattgcaccc
     1681 ggcctcaata cagtgggctt tatgctcccc tatacgccgc ttcatttatt gatcaccagg
     1741 cgaatcgatg ggccactagt catgacgagt ggcaatgttt ctgatgagcc gcaggttacg
     1801 agcctcgaca ctgcgaggat cggcttgaga ggcattgccg atgcaatgtt gatgcacaac
     1861 cgtgagatcg cgaaccggat cgatgattca gtagtgcgga tagtgggagg gaaaccaacg
     1921 gtgatgcgtc gggcccgcgg ttatgccccc agtgctgtgc cgttaccgtc tggttttgaa
     1981 gatgctccgg acttactgtc ttttgggggc gagttgaaat ccactttctg cgttttgaaa
     2041 gacggcgcag cgatcctgtc tcagcaccag ggtgatctgg aggacatttc gacgttcgag
     2101 gattatcaaa agaacctgca tctctattcg cggatttacg atcaccgtcc gagcgtattg
     2161 gttgctgata tgcatcccga atatctttcc gccaagctcg ccaaacagac agcgcaaacg
     2221 gaaagcttgc cgcttgtcga agtgcagcat catcatgcgc acatcgctag ttgcatggtt
     2281 gaaaacggag tcgctttgga cgcgccaccc gtgcttggta ttgcattcga cggcctgggc
     2341 tttggtgagg atggcacgtt ttggggcggt gagtttctgt tggcagatta ccgcggctat
     2401 cggcgaattg cctcgttgaa gccagtagcg atgattggtg gcttccaggc tatccgcgaa
     2461 ccttggcgaa acacctatgc acacctcgta gccggtattg gctggccgga ctttgtcgat
     2521 cgattctcct cactggatct ttatcgttac ttaatcaata agccgctgcc gacgattgat
     2581 cgaatgctga aaacaggact taacgtgccg ttggccagtt cgtgtggtcg acttttcgat
     2641 gctgttgctg cggctctggg gctatgtgcc gacaaggcga tctttgaagg tcaaggggca
     2701 atggaattgg aagcgttagt cgcgccgggg caaacatcgg ccgaggtccc gtatccattc
     2761 gctcttgtcg aacagcccgg cggaattatc caccttgaat cgtcaccaat gtggctggcc
     2821 ctgctggagg atctttccca aaagactgcg gctgctcgaa tcgctgcacg cttccacaac
     2881 ggcctcgctc gtgggatccg taacatggtt gcactcatcc gagagacaag tgacaacgcc
     2941 acatcggtga acacgatcgc gctcagcggc ggctgtttcc aaaacaagct cctcttagaa
     3001 gaagtagtgc gattactaaa tgcggatggt ctaacttgtc tcttacacgc caaagtccca
     3061 acgaacgacg gagggttggc actgggacaa gctgctatag ctgcagcacg taatatcgag
     3121 cgttctttgg agtgcggcgg cttgacgccg ctttgttctc catcaagcgg cataaaaaac
     3181 taaagcggcg tcaagctgcc gcactccaaa gaaggagcac gcaatgtgtc ttggaatccc
     3241 tgggcaaatc gtaaagatca cggacgctaa gcgacaaatg gcgctcgtgg atgttagtgg
     3301 cgtccaacga gaagttagtt tggagtgtgt ggttgacgaa taccacccgc tcgaaaagtg
     3361 tgtgggccac tggacact
//
LOCUS       DATCGC010001368         1010 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_118619, whole genome shotgun sequence.
ACCESSION   DATCGC010001368 DATCGC010000000
VERSION     DATCGC010001368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1010
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118619"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1010)
                     /locus_tag="VIJ87_13220"
     CDS             complement(<1..>1010)
                     /locus_tag="VIJ87_13220"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5445402.1"
                     /translation="TLALGIGANTAIFSVLSALLFKPLPYPESDRLLAVSFENGQPNG
                     YQFWSFPKYTAFRDSQSSFNSVAAYEQLQVTVDAYQPRRTEAEMVTPNYLSLLGIKPV
                     LGTAFPETGETDQPLLLLSHRMWQREFGGDNQIVGRTVRVNRELFVIGGVLPEDFRGQ
                     SGTVECWVPVTMADRLKFKTALTSNAATWLKVIGRLKPHVNAQQATAEMPLVSNRVAQ
                     LVPAQPNELTANGQQSIKLVPLKDTKVDPAIRKSFLILQAVVLLLLAIACANTANMLL
                     ARSMLRKKEFSVRLAIGGSRWRVLRLVLTESLLLGLLGGATGLLFAMWMVRWMTSAKP
                     LN"
BASE COUNT          264 a          264 c          249 g          233 t
ORIGIN      
        1 tattcaaagg ctttgcgctg gtcatccagc gtaccatcca cattgcgaac aacaatccgg
       61 tggcgcctcc aagtaagcca agcaacaggc tttcagtgag aaccaatcgc aggacacgcc
      121 aacgcgaacc gcctattgcc agtcgaacgg aaaactcctt tttgcgtaac atggatctgg
      181 ccaacaacat gttcgcagtg tttgcgcatg cgatcgcaag taatagaagg acaactgcct
      241 gaaggatcag aaatgacttg cggatggcgg gatcgacttt tgtgtctttg agcggtacaa
      301 gctttatcga ctgctgacca ttcgccgtga gctcgttcgg ctgtgcagga acaagttgtg
      361 cgacacgatt gcttacaaga ggcatttccg cagtcgcctg ctgagcgttc acgtgtggct
      421 tcaaacgacc gattaccttt aaccacgttg ctgcgtttga ggtgagcgcc gtcttgaact
      481 tcaagcggtc ggccattgtc acgggcaccc aacattcaac tgttcctgac tgaccgcgaa
      541 agtcctcagg caatacgcca ccgataacaa acaattcacg attcacgcga actgttcgac
      601 caactatctg attgtcgccg ccaaactcac gctgccacat tcgatggcta agcaataaca
      661 atggctgatc agtttcccct gtctcgggaa atgcagtgcc caacaccggt ttgatgccga
      721 gcaaagatag gtagttggga gtaaccatct cagcctcagt acgtctcggc tgatacgcat
      781 caactgttac ttgaagctgt tcgtaggcag cgaccgagtt gaaggatgac tggctatctc
      841 gaaaggctgt gtattttgga aaggaccaaa actgataacc attcggctgt ccattttcga
      901 acgatacggc taataagcga tctgattcgg gataaggcaa cggtttgaat agaagcgcac
      961 taaggacact aaagatcgca gtgttcgcac caatgcccaa cgccagcgtt
//
LOCUS       DATCGC010001369         1253 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_417915, whole genome shotgun sequence.
ACCESSION   DATCGC010001369 DATCGC010000000
VERSION     DATCGC010001369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1253
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_417915"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..208)
                     /locus_tag="VIJ87_13225"
     CDS             complement(<1..208)
                     /locus_tag="VIJ87_13225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445403.1"
                     /translation="MVHHITSRTILFVSLLILLLLAGIASGQTPATSPSPAFDNYVPG
                     PDSKPQPDVPKGEIIKLSFDKSKIF"
     gene            complement(397..987)
                     /locus_tag="VIJ87_13230"
     CDS             complement(397..987)
                     /locus_tag="VIJ87_13230"
                     /inference="COORDINATES: protein motif:HMM:NF024769.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdeI/OmpD-associated family protein"
                     /protein_id="HEY5445404.1"
                     /translation="MTKPKFFKTPAEFRDWLLKNHDSKSELLIGFHKKDSGKKSITYP
                     EALDEALCFGWIDGVRRNLDETSYTIRFTPRKPKSIWSLINVNHVARLKKEGRMQPSG
                     LAAFALREDKRTGIYSFENRPKELSPEYQKKFKANKKAWEFFNAQPPYVTKTSAFYVM
                     SAKNEETRLRRLDRLIDASAKGERLGILAAKPKKKT"
     gene            complement(984..>1253)
                     /locus_tag="VIJ87_13235"
     CDS             complement(984..>1253)
                     /locus_tag="VIJ87_13235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445405.1"
                     /translation="QGAALVADPHPEQNFFRRSDNYTLALRGVVAHTVSSFGLHTDYH
                     RVGDEVSKVDFPFMTQSINSLMKPIRWLADSSFKPAWLPGQAPTR"
BASE COUNT          284 a          309 c          322 g          338 t
ORIGIN      
        1 gaaaaatctt cgacttgtcg aaactgagtt tgatgatctc gcccttggga acgtcaggtt
       61 gtggcttgga atccgggccg ggaacgtagt tgtcgaaggc tggcgacgga ctagttgcgg
      121 gtgtttgtcc cgaagctata cccgctaaca aaagcaggat aagcagacta acgaacaaga
      181 ttgttctcga cgttatgtga tgaaccattt cttcggcacc tcggggattg gagtgattct
      241 ttcaatgctc gtctattttc agagccacaa actagtggcc aagtggccat gaagtcagta
      301 ccacagcgcg gtagcgtgtg gcttgaagtt cgagagttgc taatgtccag tcaagagcca
      361 cacgctaccg cgtagtggta ctgacttcat ggtagcctac gttttcttct ttggcttcgc
      421 ggctaagatt cccagccgtt cacccttggc tgacgcatca atcaatcgat caagtcggcg
      481 cagccgcgtt tcttcgttct ttgcgctcat cacatagaag gccgacgtct ttgtgacgta
      541 aggtggctga gcattgaaaa actcccacgc tttcttatta gctttgaact tcttctgata
      601 ctccggcgac aactccttcg gtctgttttc aaatgagtaa atgccggttc gtttgtcttc
      661 gcgtaaagca aacgcagcca atcctgaagg ttgcatccgg ccttctttct tcagtcgggc
      721 gacgtgattt acgtttatca agctccagat actcttcggc tttcgcggag tgaaccgaat
      781 tgtgtagctc gtttcgtcca gatttcttcg cacgccatcg atccaaccga agcacaatgc
      841 ttcgtcgagg gcttcaggat aggtaatgct cttcttgccg gagtccttct tgtggaagcc
      901 aatcaacaac tcgctcttcg aatcatgatt cttcaagagc cagtcgcgaa attcggcagg
      961 tgttttgaag aacttgggtt tcgtcatcta gtcggagctt gtcctggcaa ccaggccggc
     1021 ttaaatgaag aatccgccag ccatctaatg ggtttcatta acgagttgat agattgcgtc
     1081 atgaaaggga agtcgacctt cgaaacttcg tcacccacgc gatgatagtc cgtgtgcaac
     1141 ccgaaacttg aaaccgtgtg agctacgact ccacgaagtg ccagcgtgta gttgtcagag
     1201 cgtcggaaga agttttgttc gggatgcgga tcggcaacaa gcgcggcgcc ttg
//
LOCUS       DATCGC010001370         1134 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_151866, whole genome shotgun sequence.
ACCESSION   DATCGC010001370 DATCGC010000000
VERSION     DATCGC010001370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1134)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1134)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1134
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151866"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..576
                     /locus_tag="VIJ87_13240"
     CDS             <1..576
                     /locus_tag="VIJ87_13240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445406.1"
                     /translation="SLGGRVTITSSATTSTLTISNAQPGDSGIYNVETTGSCNTATQS
                     ATLAVNSGGPTITLKNVNISLWPPNHRYETVTVADLVQSASDACDAGVTINSVKILQV
                     TSDELDDNPSGADGNTINDIVIAADCKSVQLRAERDGNLNGRVYTITFIATDVFGHST
                     TVTAKVVVPLSQNGQAAIDSGAHNTVNGNCP"
     gene            606..989
                     /locus_tag="VIJ87_13245"
     CDS             606..989
                     /locus_tag="VIJ87_13245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445407.1"
                     /translation="MRNIMCCSIGRYLPACLLVAVVLLSANVFGSSTSTSNSINVTIT
                     NSSQKDIKHVYVALGNPDNWGPDCLTSAITTGGSFTVNGIACDGSTVRVIAEDQNGCF
                     YYNNVSCDGNATWTISDNSTADCGG"
BASE COUNT          282 a          295 c          296 g          261 t
ORIGIN      
        1 agtcttggcg gtcgagttac catcacgagc agtgcgacaa cgagcacgtt gactatcagc
       61 aacgctcaac cgggtgactc ggggatttac aacgttgaga ctaccggctc ttgtaacact
      121 gccacgcaga gcgcgacgct ggcagtgaat tcaggcggtc caacgatcac gcttaaaaac
      181 gtgaacatct cgttgtggcc acccaatcac agatacgaga cggttacggt cgcggatctc
      241 gtgcagagcg cctcggatgc ttgcgatgct ggagtaacaa ttaacagcgt caagattctc
      301 caggttacga gcgatgagct cgacgataac ccgagcggag ctgacggcaa tacaatcaac
      361 gacattgtta tcgccgcaga ttgcaagtcg gttcagttgc gcgctgaacg cgacggtaat
      421 ctcaatggtc gtgtttacac catcaccttc atcgccaccg acgtgttcgg tcactcaact
      481 actgtgacgg ccaaagtagt ggttccgctt tcacagaatg gccaggcggc gattgatagt
      541 ggtgcgcaca acacggtgaa cggaaactgc ccgtaaggga aacatttcaa ccgaggagta
      601 tgacgatgag aaatatcatg tgttgttcaa tcggacgtta cttgccggct tgtttactgg
      661 tcgcggttgt cttgttgtcc gccaatgttt ttggcagcag tacctcgacg agcaactcga
      721 ttaacgtcac catcacaaac agttcccaaa aggacatcaa gcacgtctac gtagcacttg
      781 gtaatccgga caactgggga cctgattgcc tgacttcagc aattaccact ggcggctctt
      841 ttaccgtcaa cggtatagcg tgcgatggtt caaccgttcg cgtcattgct gaagatcaga
      901 atggctgttt ctactacaac aacgtttcat gtgacgggaa cgccacgtgg acaatatcgg
      961 acaactcgac tgctgactgc ggaggttagt ttcagcgcta gcatcagccg tcagcgtgca
     1021 ttccgggaag ttccacttaa gtggagatgt ttacaagggg cttttccatc aagaagacat
     1081 tcgggcaact cacgacacga gccaatctct tcgtgcgtcg agttgcccgt aacc
//
LOCUS       DATCGC010001371         1359 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_151888, whole genome shotgun sequence.
ACCESSION   DATCGC010001371 DATCGC010000000
VERSION     DATCGC010001371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1359)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1359
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151888"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..523)
                     /locus_tag="VIJ87_13250"
     CDS             complement(<1..523)
                     /locus_tag="VIJ87_13250"
                     /inference="COORDINATES: protein motif:HMM:NF014755.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006303 - double-strand break repair via
                     nonhomologous end joining [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ku protein"
                     /protein_id="HEY5445408.1"
                     /translation="MRSIWKGHIRFLLVAIPVRIYNALETSEKISFNQLHRDDYGPIG
                     YDKRCKKCGQIVSGDQITKGYQYEPDRYAIVEPDDIAKIKIKTTKAVDIVGFVDRDEV
                     PTTFFDAPYFAGPDGPVSEKPYALLREVMKQTGKIAVGKVVLRDREDLVAVFPHEEGL
                     VIQKLHYPHELRKM"
     gene            complement(807..>1359)
                     /locus_tag="VIJ87_13255"
     CDS             complement(807..>1359)
                     /locus_tag="VIJ87_13255"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY5445409.1"
                     /translation="ESRGGFLPYADAMSIIAQALDALAYAHTQGYIHRDFKDQNILVS
                     GHSPNLIAKLTDFGLAKSFTHSGMSGVTMAGEMAGTLAYMPPEQLRNFRDVKPQSDIY
                     AVGMTAYSLLTGKLALDLTRKTSVNDTIRAIFEQPCIPLRERAPHVPQPVCEIIDRAL
                     AKDPSQRWQSAGAMRKALMTVIG"
BASE COUNT          292 a          343 c          381 g          343 t
ORIGIN      
        1 ccattttgcg aagctcgtgc gggtaatgga gcttctgtat cacgagacct tcttcgtgtg
       61 gaaacaccgc aaccaggtct tcacgatcgc gcagcacaac tttgccaact gcgatcttgc
      121 cggtctgttt cattacttca cggagcaagg catagggctt ttcggatacg ggtccgtcgg
      181 gcccggcaaa gtagggtgcg tcgaaaaagg tagtcggaac ttcgtcacgg tcgacgaaac
      241 cgacgatgtc tacagccttt gtcgtcttga tcttgatttt cgcaatgtcg tcgggttcga
      301 ctatcgcgta gcggtctggt tcgtactggt agcctttggt tatttgatcg ccgctcacaa
      361 tttgaccgca cttcttgcag cgcttgtcat agccaattgg cccgtagtcg tcacgatgca
      421 gttggttgaa cgagatcttc tcgctggtct ccaaggcgtt gtaaatgcga actgggatgg
      481 cgaccagcag aaagcgaatg tgacctttcc aaatagacct catattcacc tctcctcatg
      541 cgaaacgcgg gctaatgccc gcgctatgtg tgccttcgcc cggttggttc tcgcgaagag
      601 gccgtattat gcggggttcc agagttctag taaagcataa tttgtggggc gcaggccgtt
      661 tcgaagcgac gtagtcagta ccactacgcg gtagcgtgtg gctcgaaaca gttcaatcat
      721 caaatactgt tgagccacac gctaccgcgt agtggtactg actacgtcgc cactgagtcc
      781 cgctatccat gttgttggaa tcaggcttag ccaatcacgg tcatcagcgc cttgcgcatg
      841 gcgccggctg actgccatcg ttgggaagga tccttggcga gcgcgcgatc gataatttca
      901 cagactggct ggggaacgtg tggcgctcgc tcgcgaagtg gaatgcaggg ttgttcgaag
      961 attgcgcgga tagtgtcgtt gacgctggtt tttcttgtca gatcaagagc tagtttgccg
     1021 gtcaacaaac tgtaggctgt cataccaaca gcatagatat ccgattgcgg tttgacgtcg
     1081 cgaaagttgc gaagctgttc gggcggcatg taagccaatg tgccggccat ctcaccggcc
     1141 atcgttacgc cactcattcc agagtgagta aaacttttcg ccagtccaaa gtcagtcaat
     1201 ttggcaatca gatttggtga atgacccgac accaggatgt tctgatcttt gaagtcgcga
     1261 tggatgtagc cctgggtatg ggcgtacgcg agcgcgtcga gtgcctgggc aataatcgac
     1321 atagcatcag cgtaaggtag aaagcctccc cgagattct
//
LOCUS       DATCGC010001372         1061 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_486061, whole genome shotgun sequence.
ACCESSION   DATCGC010001372 DATCGC010000000
VERSION     DATCGC010001372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1061)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1061)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1061
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_486061"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..975
                     /locus_tag="VIJ87_13260"
     rRNA            <1..975
                     /locus_tag="VIJ87_13260"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          273 a          248 c          315 g          225 t
ORIGIN      
        1 ccggattcat tgggtttaaa gggagcgtag gtggccttgt aagtcagtgg tgaaatcctg
       61 tcgcttaacg atagaattgc cattgatact gcagggcttg agtacagttg ccgttggcgg
      121 aatatgacat gtagtggtga aatacttaga tatgtcatag aacaccgatt gcgaaggcag
      181 ctagctagac cgacattgac gctgaggcac gaaagcgtgg ggatcaaaca ggattagaaa
      241 ccctggtagt ccacgcccta aacgatgatt actcgatgtt ggcgatacac tgccagcgtc
      301 taagcgaaag cattaagtaa tccacctggg gagtacggcc gcaaggctga aactcaaagg
      361 aattgacggg ggcccgcaca agcggaggag catgtggttt aattcgatga tacgcgagga
      421 accttacccg ggcttgaaag ttagtgaaga atgtagaaat atattcgtcc ttcgggacac
      481 gaaactaggt gctgcatggc tgtcgtcagc tcgtgccgtg aggtgttggg ttaagtcccg
      541 caacgagcgc aacccctatc attagttgcc aacaggttat gctggggact ctaatgagac
      601 tgcccgcgca agcggtgagg aaggtgggga tgacgtcaag tcatcacggc ccttacgtcc
      661 tgggctacac acgtgctaca atggccgata cagagggcag ccacatggca acatggagct
      721 aatcctaaaa gtcgatctca gttcggatcg aggtctgcaa cccgacctcg tgaagctgga
      781 ttcgctagta atcgcatatc agccatgatg cggtgaatac gttcccgggc cttgtacaca
      841 ccgcccgtca agccatggga gttgggggta cctgaagtcg atcaccgcaa ggagtcgcct
      901 agggtaaaac caatgactgg ggctaagtcg taacaaggta gccgtaccgg aaggtgcggc
      961 tggatcacct cctttctaag gagtacttgg caatccgggg cgctcgacga ccgatcgagc
     1021 gtcggcagta ccggagagac tccaggtcga tgcactggtt a
//
LOCUS       DATCGC010001373         1456 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_486062, whole genome shotgun sequence.
ACCESSION   DATCGC010001373 DATCGC010000000
VERSION     DATCGC010001373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1456)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1456)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1456
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_486062"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..450
                     /locus_tag="VIJ87_13265"
     CDS             <1..450
                     /locus_tag="VIJ87_13265"
                     /inference="COORDINATES: protein motif:HMM:NF024865.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4440 domain-containing protein"
                     /protein_id="HEY5445410.1"
                     /translation="CLLSFLSIIILLLSMSPGSNAQSASDNKTIAAIRAVIEAQRDAW
                     NKGDIEGYMDGYDRSDNTVFVSGDSVTHGWKTVLDRYKKGYDTREKMGQLTFSDLEFT
                     ILSKDSAVVVGRWLLKRSKDEPHGRFTLIFKKTKQGWRIIHDHTSSV"
     gene            475..>1456
                     /locus_tag="VIJ87_13270"
     CDS             475..>1456
                     /locus_tag="VIJ87_13270"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HEY5445411.1"
                     /translation="MADETKANTRLQQVEQEVEERSAVFKKQLGLFDLVLTQVVFVVG
                     TIWVGHAAKLGSEQNFFWILAILTFYLPLAAVVIFLNRLMPLEGGLYQWAKLAFNDLV
                     AFMVAWNLWVFAISILAGIGLVVTTNISYAIGPQAAWMKEAKILITVVSIGLVVAMVL
                     AATRGLGLGKWVHNAGGLLLMVTFAALIGLPFFALYQGTISEYHPFAMQIPTLSAYNI
                     NVCSKLALGALTGFEYVAILAGETKAPARNIARSVVIAAPIIAVMFILGTSSVLAFVT
                     PGTVDLISPIPQVLSIGFGSYGWVGKIISLTIIGVVVRQIALMSIYFAGNT"
BASE COUNT          322 a          373 c          379 g          382 t
ORIGIN      
        1 tgcttgctct ccttcttgtc catcatcatt ttgctgctct cgatgtcgcc tggttcaaat
       61 gcacaaagcg cgagcgacaa taaaactatc gcagcaatcc gggccgtgat cgaagcgcag
      121 cgcgacgcct ggaacaaggg cgacatcgaa ggttacatgg acggttatga tcgttccgac
      181 aacactgtgt ttgtctctgg cgactccgtc acgcacggtt ggaaaactgt tcttgaccgc
      241 tacaaaaaag gctacgacac gcgcgagaaa atggggcaac tcactttctc agatcttgag
      301 tttacaattc tcagtaaaga ctccgcagtc gtcgttggtc gttggttact caaacgttcg
      361 aaggacgaac ctcacggcag atttaccttg atcttcaaga agactaaaca aggctggcgc
      421 ataattcacg accatacatc ttcggtctag ttcagcgcgt ttctcgttaa ccttatggct
      481 gacgaaacaa aagctaacac caggcttcag caagtcgagc aggaagttga agagcggagc
      541 gctgtcttca agaagcagtt aggtctcttc gaccttgtgc taacccaggt tgtttttgtc
      601 gtcggaacga tttgggttgg ccatgcagca aagctcggta gtgaacaaaa ctttttctgg
      661 atactcgcca tcctcacttt ctatttgccg ctcgcggctg tcgtgatctt tctcaatcgc
      721 ttgatgccac tcgagggcgg tctctaccag tgggccaaac tcgctttcaa tgacctcgtc
      781 gcgtttatgg tcgcgtggaa cctctgggtg tttgcgatct caatcctcgc cggcattgga
      841 ctcgttgtga cgacaaacat ctcctacgcg attgggccac aagccgcctg gatgaaagaa
      901 gcgaagattc tgatcaccgt ggtcagcatt gggttagtcg tggcaatggt actggcggcc
      961 acgcggggtt tgggtcttgg taaatgggtt cacaacgctg gcgggctgtt attgatggtc
     1021 acgtttgcgg cgttgatcgg tctgcctttc tttgcgttgt atcaaggcac gatctcggaa
     1081 taccacccgt tcgccatgca aattccaacg ctctcggcat acaacatcaa tgtttgcagc
     1141 aaactcgcgc tcggcgcgct caccggattt gaatacgtcg caatcctcgc gggtgaaaca
     1201 aaagctccgg ctcgaaacat cgcgcgttcg gtcgtaatcg cggcgccaat aattgcggtc
     1261 atgtttattt tgggaacgag ctcggtgctc gcgtttgtta cgcctggcac ggttgatttg
     1321 ataagcccga ttccgcaagt gctctcgatc gggtttggat cttacggttg ggtaggaaaa
     1381 attatttcgt tgaccatcat cggcgtcgtc gtgcggcaaa ttgcactgat gagtatttac
     1441 tttgccggga acaccc
//
LOCUS       DATCGC010001374         1282 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_418007, whole genome shotgun sequence.
ACCESSION   DATCGC010001374 DATCGC010000000
VERSION     DATCGC010001374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1282)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1282)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1282
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_418007"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(176..571)
                     /locus_tag="VIJ87_13275"
     CDS             complement(176..571)
                     /locus_tag="VIJ87_13275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445412.1"
                     /translation="MTTSIRGLMGSKRNLVFGVAVGLLIAGAGNPAMAAEQSGTSPEG
                     AAGLQAVSWLATVPYGAMKVAYAVGGGIVGGLTWMMSGGDTEAAKAVWIPSMTGDYIV
                     QPENLTGEKSLHFMGGSAEKSQPELFSRR"
     gene            984..>1282
                     /locus_tag="VIJ87_13280"
     CDS             984..>1282
                     /locus_tag="VIJ87_13280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445413.1"
                     /translation="MSINLEEIDMTVRGDKYFATVAVGPFFLTVIPWPPGIYRLIVDQ
                     TSDPPLPLEIRIAPKAGPVSFDAMKVFLVFDNGQRLQPKARVLVTPLTTYTLLGS"
BASE COUNT          303 a          367 c          290 g          322 t
ORIGIN      
        1 agagccatga cggatatcga caaggccgaa ggcatataca ggcgcttgga catcctccag
       61 gaatacttcc tcgaccatcc tgaatcaacg aacgaaggga agaggccttg aagcgggatg
      121 aaccgttcgg cttcgacatg cgtcctaggt ccaccgggcc tatacgtcaa accctctacc
      181 tacgggaaaa aagttctggc tgggacttct ccgctgaccc acccatgaag tggagagact
      241 tctcgccggt gagattctct ggttgcacga tataatcgcc ggtcatagaa ggaatccaca
      301 ccgccttggc agcctccgtg tctcctccac tcatcatcca agtaagaccc ccgacgatgc
      361 ctccgccgac agcgtatgcg accttcatgg ctccatacgg aacggtagct aaccagctga
      421 cagcctgtag tcccgccgca ccttccgggc tggtgcccga ctgttccgca gccatcgccg
      481 ggttccctgc ccctgctatt agcagtccga cggctacacc aaagacgaga ttccgtttgc
      541 tacccatcaa tccccggata ctcgttgtca tatctccttc tccttgctag ggttcaacgc
      601 gacgttcccg cgcgcattat acccgaaatc tgcctgggtt cagcacctca tttatctatt
      661 tttcagaatg gcatgtcttg atccgcagcc gataccctac gacaattcta agtgaccagg
      721 ttcaaaaagc ctcattgaaa ttggtatgga atgtgggtcg ctttcccgaa cgaattgaac
      781 tatcctttgg tctgttcaac accaaatatt agtggatgat tatgaattgt aagactgtta
      841 tcacccttac tcttatctca atacttatat ctctgaatgc ttgtggcggt atgggggtag
      901 tgacctacaa tgcaccaacc agtcctaagc caaccgacaa gtccccttta ttcgacctcg
      961 ggactcatgg gtctgtcgag atcatgagca tcaaccttga agaaatagac atgaccgttc
     1021 ggggggataa atactttgcc acagtagctg taggcccatt tttcctcacg gtgattccct
     1081 ggccccctgg catttatcgt cttattgtgg atcaaacctc cgatccaccc cttccactag
     1141 agattagaat agctccgaag gctggtcccg ttagctttga tgcaatgaaa gtgttccttg
     1201 tatttgacaa cggacagcgt ctgcaaccga aagctcgtgt gttggtaacg cctctcacaa
     1261 cttatacgct gcttggtagt ga
//
LOCUS       DATCGC010001375         1107 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_118749, whole genome shotgun sequence.
ACCESSION   DATCGC010001375 DATCGC010000000
VERSION     DATCGC010001375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1107)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1107)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1107
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118749"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..577)
                     /locus_tag="VIJ87_13285"
     CDS             complement(<1..577)
                     /locus_tag="VIJ87_13285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007888607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA/Hda family protein"
                     /protein_id="HEY5445414.1"
                     /translation="MNPTIETNVWGEILHSLSGRLNQQTLDQWFGSIQFESVDTVGQV
                     IRLRAPNQMIKDWVVSNYAKLLDESLNDLRLGGYSLGWEIGQAQVATAAGASSASSTS
                     NLPQNTVPVPFGDSTPTGENARVEPLGSTVLQSEPTLSSRYTYDSFVVGSCNQFAHAA
                     SMAVAEAPGRTYNPLYLYGGVGLGKTHLMHAC"
BASE COUNT          296 a          257 c          278 g          276 t
ORIGIN      
        1 cgcatgcgtg catcaagtga gttttgccga gacccactcc gccgtaaagg tataaagggt
       61 tgtaggttcg tccaggagct tctgctacag ccatcgacgc cgcatgagca aactgattgc
      121 atgacccaac cacaaagcta tcgtaggtgt agcgggaact cagcgttggt tcagactgga
      181 gtacggtaga accaaggggt tcgacgcggg cgttctcccc agtgggcgtt gagtcgccga
      241 agggcacagg tacagtgttt tgtgggagat ttgaagtaga agaggcactg gacgccccag
      301 cggccgtcgc tacctgtgct tgtccgatct cccaacccag tgaatatccg ccgagccgaa
      361 ggtcattgag agactcgtcg agaagcttgg cgtaattact aacaacccaa tctttgatca
      421 tttgattggg cgcgcgtaaa cggatcacct gtccgaccgt gtcaacactt tcaaactgaa
      481 tcgatccaaa ccactgatcc agagtctgtt gatttagtcg tccgctcaac gaatggagaa
      541 tctcacccca tacattcgtt tcaattgttg gattcatctg aagacgtaaa actggagggg
      601 ttcaatttga ctaaagcccg cgtaatacaa ccgtgcaccg gttcttcgag aactctaacc
      661 ctaccctatt cccaggattc ctagtgaaat tatgtaatct agcagcgccg gtgatttcca
      721 cagcgttttc cacagctagt ggaaaaagat cccagcgctt aaagtaatgc tttaaagtct
      781 tttcttatca attatttaca gtccctttag ttggaaggca ggcggaatct aacacataac
      841 ttttcggttt atcaagcgag tggggttaat aaaacaagta caaattccca ggcctctggt
      901 cgttagaaaa tttgagcagt aggtatcata tcagtacaga aagtgatcga gaccagtcga
      961 gggttcagat gcatttgtaa ggttgggtgt aggggcaaga gaaccttgaa tgcgcgctag
     1021 gtggtccgaa gatcaaaagc agacttgcat tcttgacata acccaaggcg ccgattagtc
     1081 ttaggatttt cgtctacagg agagaat
//
LOCUS       DATCGC010001376         2193 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_453864, whole genome shotgun sequence.
ACCESSION   DATCGC010001376 DATCGC010000000
VERSION     DATCGC010001376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2193)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2193)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2193
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_453864"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..642)
                     /locus_tag="VIJ87_13290"
     CDS             complement(<1..642)
                     /locus_tag="VIJ87_13290"
                     /inference="COORDINATES: protein motif:HMM:NF021539.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2270 domain-containing protein"
                     /protein_id="HEY5445415.1"
                     /translation="MSVDQHSAAGLMKRLSPSEFNTAMIPFYRGEVQRSNTWRNRLDT
                     TTNWAVITAGATLSFVFSSPSNPHFVIPINSILVAIFLLMEARRYRYYEIWSSRVRVL
                     ETGYFAHLLAPNVAPPDEAWAEHLAADLTTPHFTITEWEAVGRRLRRNYLWIFALLAL
                     SWNLKVYLHPLPARDFDAFIDRATVGIVPGWIVFVFGVVFNAAIAIFAIGTLRL"
     gene            1014..1481
                     /gene="tadA"
                     /locus_tag="VIJ87_13295"
     CDS             1014..1481
                     /gene="tadA"
                     /locus_tag="VIJ87_13295"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: protein motif:HMM:NF008113.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008251 - tRNA-specific adenosine
                     deaminase activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0002100 - tRNA wobble adenosine to inosine
                     editing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HEY5445416.1"
                     /translation="MKNAAESALDEHWMRQALDAAREAQTREEVPVGTCIVRDGKLLS
                     VAGNRTRTDCDPTAHAEIVALREASKIAGNFRLTGADVYSTIEPCAMCAGALIQARVR
                     RLVYGARDDRAGAVESRFRICDTDFLNHRIEIVAGVLEEECRAVMQEFFKNRR"
     gene            1583..1672
                     /locus_tag="VIJ87_13300"
     tRNA            1583..1672
                     /locus_tag="VIJ87_13300"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1617..1619,aa:Ser,seq:cga)
     gene            1690..1779
                     /locus_tag="VIJ87_13305"
     tRNA            1690..1779
                     /locus_tag="VIJ87_13305"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1724..1726,aa:Ser,seq:gga)
     gene            1942..>2193
                     /locus_tag="VIJ87_13310"
     CDS             1942..>2193
                     /locus_tag="VIJ87_13310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445417.1"
                     /translation="MGDDKLALEEARRATQHEAVKAQVENEVQAEITDRAAQKVAPHE
                     SQRIEQVAGDFRSKAVNEVVDTEREVQRSRGLARVSQVVD"
BASE COUNT          572 a          547 c          618 g          456 t
ORIGIN      
        1 caaccgtaac gttccaatcg cgaagatagc gatcgcggca ttaaaaacga cgccgaatac
       61 aaacacgatc cagcccggca ctattccgac agtggctcga tcaataaacg catcgaaatc
      121 ccgggcaggc agcggatgta aatacacttt gagattccaa ctcaacgcca ggagcgcgaa
      181 tatccacagg tagtttcgtc ttaatcgtcg tcctactgct tcccactcag taatggtgaa
      241 gtgcggcgtt gttaagtcgg cggcgagatg ctcggcccat gcttcgtcag gcggcgcgac
      301 atttggagct agcaaatgag cgaaatagcc ggtctccaaa actcgcacac ggctcgacca
      361 gatttcatag tagcgataac gccgcgcctc cattaacaga aagatggcga cgagaatgga
      421 gttaatcgga atgacaaagt gcggattact cggtgagctg aacacaaacg acagcgtagc
      481 gccggcagtg atgacggccc agttggtagt cgtatcgagt ctgtttcgcc aggtgtttga
      541 acgttgcact tcaccgcgat agaagggaat catcgcagtg ttgaactcag acggcgacag
      601 tcgtttcatc aacccggcgg ctgaatgttg atctacactc aaggggtcga tctgagtcga
      661 gggtctgaga cggccggtac ctctatcggt ggaaagcgaa ccgcttcctc tttggcttgc
      721 atcggtggtc atggaaacct gaatcgggtg gagcgcggga gccagaatgg agcgcagaac
      781 tccggaaggc gataatagca gagaatgtcg gatttgttgt ccgatatgct tcagcttgtc
      841 gttggccttg aaaagaaatg cgccgcaaac ggttcatcag cggctaaacc tatctgagag
      901 acgacgacaa gctgaagctt atcggacact aactccccaa attctcgtcg ccttgacacc
      961 gttttaggcc aaaccctata gtggcgcctc ggctatttga aggaataacg agagtgaaga
     1021 atgccgcaga atcagcgttg gatgaacact ggatgcggca agcactcgac gccgctagag
     1081 aggcgcaaac acgcgaagaa gtcccggttg gaacttgtat agtcagggac ggaaagctcc
     1141 tctcagtagc tggaaaccgc acgcgaactg actgcgatcc gacagcccac gctgaaatag
     1201 tcgcccttcg tgaagcctcc aagattgccg gtaatttccg tctaacaggc gcggacgttt
     1261 actcaaccat tgagccttgc gccatgtgcg ctggagcgtt gatccaggca agggtcagac
     1321 gcctggtcta cggcgcacga gatgaccgcg caggtgcggt tgagtcgcgc tttcggattt
     1381 gtgatacgga tttcttgaat catcgcattg aaatcgtggc cggagtactg gaagaggaat
     1441 gccgcgcagt gatgcaagag ttctttaaaa atcgaagata ggttgtccga taaacttcag
     1501 tttgtcgtcg tgcgattaga ggcccgtccg ggaacatatt ctgatcgcga cgacaaacta
     1561 aagtttatcg gacattgact gcggagaggt cgcatagtgg attagtgcac cggtctcgaa
     1621 aaccggagtg ggttaacgcc caccgtgggt tcgaatccca ccctctccgc cagcagtttt
     1681 aatgttctcg gagaggtgca ggagtggttg aactggcagc actggaaatg ctgtgaacgg
     1741 gaaaccgttc cgtgggttcg aatcccaccc tctccgccag aaacattgcc tgatgtccga
     1801 tatgctttag cttgtcgatg actcccacaa ggacgtccaa agctgtgtaa cgacaagaca
     1861 ggcgcatatc ggacatcaaa tcggcaatac gtaattgacg ccccccggct gaaatacact
     1921 tggtaacctt gggggataac aatgggcgac gataagctgg cacttgaaga agcgcgacgt
     1981 gcaacacagc acgaagcagt aaaagcgcag gttgaaaatg aagtgcaggc ggagatcact
     2041 gatcgcgctg cacaaaaagt ggctccgcac gagtcgcaaa gaattgaaca agtcgccgga
     2101 gactttcgtt caaaagcagt caacgaggtc gttgacaccg agcgcgaggt gcaacgttcg
     2161 cgaggtctcg ctcgagtatc gcaagtggtt gat
//
LOCUS       DATCGC010001377         1355 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_187481, whole genome shotgun sequence.
ACCESSION   DATCGC010001377 DATCGC010000000
VERSION     DATCGC010001377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1355
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187481"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(66..698)
                     /locus_tag="VIJ87_13315"
     CDS             complement(66..698)
                     /locus_tag="VIJ87_13315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445418.1"
                     /translation="MSRPVFFVILVSLLVISSRSASAQYISADTYTRYELLAPETHQF
                     KIYYEVTETRVGAKFHFNQIREGSEATDESVVDLATGKPLKFEVVTGAQAKIDSPAEN
                     FGVTAHYIKVILAHPVPTSGEYRLAIIKTYKDDKSYYSDGDDIVFKRPLGIPRDSVVL
                     PVGYEIALCSVATQVLTETDGRLKLAFVNPGSGGQLEVTIRAKKLPVKKS"
     gene            complement(720..>1355)
                     /locus_tag="VIJ87_13320"
     CDS             complement(720..>1355)
                     /locus_tag="VIJ87_13320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445419.1"
                     /translation="TFMAQIETAVFVTGLPPGLLSRIVLSGFFMALTFSPLAVLVLGR
                     GKSKQDSGNTPLQPLPVSQWIIRLTLIALCYVVIYFTFGYFLAWKNPAVRAYYHGTDP
                     GGLLAQIKSVVVDTPWLVALQFVRGLLWVFIALPVIRMMKGERWEIALSVAVCFAVFM
                     SSLLLLPNPLMPTEVRMAHLVETATSNFLFGCLLVFVLLSRRHTELSTVKR"
BASE COUNT          377 a          361 c          320 g          297 t
ORIGIN      
        1 cgtgtccact gcgtttaatt aggcctggca aaagttaacg cagaggccac agagacgaaa
       61 tgatcctagc ttttcttcac gggcaacttc ttcgctcgaa tcgtcacttc caactgtccg
      121 ccactacccg gatttacaaa cgccaacttc aatcgtccat ccgtttccgt aagcacctga
      181 gtcgccaccg agcacaatgc gatctcatat ccaaccggca atacgacgct gtctcgcgga
      241 attccgagtg gacgcttgaa cacgatgtcg tccccatcac tgtagtaact cttatcgtct
      301 ttgtaggtct taataattgc caaacgatat tcaccactcg taggcaccgg atgcgcgaga
      361 attactttga tgtaatgagc ggtgacgccg aaattctctg ctggagaatc aatcttggcc
      421 tgagctcctg tgacaacttc aaacttcaac ggctttcctg tcgcaagatc gacaaccgac
      481 tcatctgttg cctcgcttcc ctcgcgaatc tgattgaaat gaaacttcgc tccgacgcgc
      541 gtctcagtca cttcgtagta gatcttgaac tggtgagttt ccggtgcaag tagttcataa
      601 cgagtgtaag tgtcggcaga tatgtattgc gccgacgccg agcgcgacga gatgacaagc
      661 aacgagacaa gtatcacaaa gaagactgga cggctcattt ggaaggaact accccgacac
      721 taccgtttta cggtactgag ctcagtatga cggcgactca ataacacaaa aaccagcaaa
      781 caaccaaaaa gaaaattgga cgttgcggtc tccaccaggt gggccatgcg cacctcggtt
      841 ggcatcagag gattagggag taagagtagt gaactcatga agaccgcaaa acaaactgcc
      901 acggagagcg ctatctccca ccgttcaccc ttcatcatgc ggataaccgg taaagcgatg
      961 aagacccaca acaatccccg cacgaattgg agcgccacga gccacggcgt atcgacaaca
     1021 acacttttga tttgagcaag gagacctcct ggatccgtgc cgtgatagta agcccgcact
     1081 gctggattct tccaagcgag aaagtagccg aaggtgaaat agatgacgac gtaacacaaa
     1141 gcaataagag ttagtcgtat gatccactga ctgacaggta aaggttgtag tggagtgtta
     1201 cccgaatctt gtttgctttt gcctcttcca agcacgagca ccgcaagtgg cgaaaaggtg
     1261 agcgccatga aaaacccgga aagcactatt cgcgacaata gacctggcgg tagtccagta
     1321 acaaagaccg ccgtttcgat ctgcgccatg aacgt
//
LOCUS       DATCGC010001378         1180 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_321217, whole genome shotgun sequence.
ACCESSION   DATCGC010001378 DATCGC010000000
VERSION     DATCGC010001378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1180)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1180
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_321217"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            85..>1180
                     /locus_tag="VIJ87_13325"
     CDS             85..>1180
                     /locus_tag="VIJ87_13325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445420.1"
                     /translation="MVSNNFSATEGRSTGARIQMISKAGTNALHGGVSYYFQNNTLAS
                     RTVFEPNGVPVFRRNQFGYFLGGPVIKNRTFFSFSYDGWRYSQPGSALSYVPTAAEIA
                     GDFSNTSARFRRQIFNPYSTRQVGTTVVRDAFRCDPAGNPLPVNAQKVQDQSIGSVCN
                     KIPQALIFLPMQQFFKTYSAVPNYFVAGDVTNNFIQVRPTTNDSNSYQVRVDHRFWNA
                     DNIFFRYTEHRVTVFNPIGEQGSTSGSSSGRNYGGGWTHPFTPSLILDVRAGYAGRPG
                     VDSGQQNQHEAGLDPLNQAGFRDVDKYGGLLVTLANWTNGGNNNFGVRGPAPRENPNW
                     SVTPNLTWLKGNHNLKTGFWYIEAKRIQENT"
BASE COUNT          283 a          333 c          306 g          258 t
ORIGIN      
        1 agtctggatg actccaacac caactctccc tacacgggcg gtagcaatct tacgccgaac
       61 gcagactcgg tcgaggaagt ccgcgtggtc tccaacaact tctccgctac ggaagggcgc
      121 agtaccgggg cccgtattca gatgatctcc aaggcgggaa ccaatgcgct tcacggagga
      181 gtctcgtatt acttccagaa caacacgctg gcctcccgaa ccgtgtttga gcccaatggt
      241 gtgccggtgt ttcgacggaa ccagttcggg tacttcctgg gcggaccggt catcaagaac
      301 cggacgttct tttccttcag ctacgatggt tggagataca gccagcccgg ttcggcactt
      361 tcttacgttc cgacagccgc agaaattgcc ggcgacttct caaataccag cgcgcgcttt
      421 cgccgtcaga ttttcaatcc atattcaacg cgtcaggtgg gaacgaccgt ggtgcgagat
      481 gccttcaggt gtgatccggc cggcaacccc ctgcccgtga atgcgcagaa ggttcaggat
      541 cagagcatag gatctgtctg caacaagatt ccacaagccc taatcttcct tccgatgcag
      601 caattcttta agacttattc tgctgtgccc aactacttcg tcgccggtga tgtcaccaac
      661 aatttcatcc aggtcagacc gacgaccaac gattcaaaca gctatcaggt ccgagtcgat
      721 catcgtttct ggaatgcgga caacattttc ttccgctata cagaacaccg agtgacagtc
      781 ttcaatccta tcggagaaca gggctcaacg tctggtagtt catcgggccg gaactacggt
      841 ggaggctgga cgcacccgtt cactccatcg ttgatccttg atgtgcgagc aggatatgcc
      901 ggacgacccg gcgttgattc aggccagcag aaccagcacg aagcaggtct cgatccactg
      961 aatcaggctg gattccgtga tgttgataag tatggcggtt tgctcgttac gctcgccaat
     1021 tggacaaacg gcggtaataa caatttcgga gttcgaggtc ctgcgcctcg cgagaatcca
     1081 aactggagcg tgacgccaaa tctcacgtgg ctgaagggca accacaacct gaaaacggga
     1141 ttctggtata tcgaggcaaa gcgaatccag gaaaacacat
//
LOCUS       DATCGC010001379         1343 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_321218, whole genome shotgun sequence.
ACCESSION   DATCGC010001379 DATCGC010000000
VERSION     DATCGC010001379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1343)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1343)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1343
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_321218"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1278
                     /locus_tag="VIJ87_13330"
     CDS             <1..1278
                     /locus_tag="VIJ87_13330"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY5445421.1"
                     /translation="EILIRNKDRYTADMTREMGKVLKEAGGDVQEAIDCTYYTAGEGR
                     RLHGFTAPAEMRDKFAMCVRQPVGLCGLITPWNFPMAIPSWKLIPALICGNTVVIKPA
                     EDTPLSTYNLVKACEEAGIPPGVVNMVTGFGETVGAAMTNHNALRLISFTGSTETGRI
                     VASACAERNAICSLEMGGKNAIIVMDDADVDLAIEGAVWGALGTSGQRCTPSSRLIVH
                     KKVYKQFVKKLVDATKSLSVGNGADPKTDVGPVINGDAVEKVMNYIRIGRDEDGATLA
                     CGGKRITRGDYDYGHFIEPTVFSDASPDMRISQEEIFGPVTTVIPTNSLEEAIRIANG
                     VRYGLSAAIYTKDVNRAFRAMNDLYTGIFYVNASTIGAEVHLPFGGTKATGNGHREAG
                     TQVLDIFSEWKSIYVDFSGKLQRAQIDAVEAPQ"
BASE COUNT          339 a          336 c          368 g          300 t
ORIGIN      
        1 gagattctga ttcgaaacaa agatcgctac accgcagaca tgacccggga gatgggcaaa
       61 gtcttgaagg aagccggggg cgacgttcag gaagcaatcg attgcactta ctacacagca
      121 ggagaaggtc gacgtctgca cggcttcact gcgcccgctg aaatgcgcga caagtttgcg
      181 atgtgcgtac gccaacccgt gggtctttgt ggattgatta ctccatggaa ttttccgatg
      241 gcgattccat cgtggaaact gattcccgca ctcatctgcg gcaacacggt ggttatcaag
      301 cctgccgagg acactccact ttcaacttac aaccttgtga aagcctgtga agaagcagga
      361 atacctccgg gcgttgtaaa catggtgacg ggatttggtg aaactgtggg tgcagcgatg
      421 acaaaccaca atgcgctgcg cttgatttcg ttcactggct caaccgagac aggccgcatc
      481 gtcgcctcag cctgtgccga acgaaacgcg atctgttcgc tcgaaatggg cggcaagaac
      541 gccatcatcg tcatggacga tgcagatgtg gatctagcaa tcgaaggcgc cgtgtggggc
      601 gccttgggca cgtcaggaca aagatgcacc ccttcgtcca ggctgattgt tcacaagaaa
      661 gtctacaagc aattcgtaaa gaagttggtc gacgcaacga aaagcttgag tgtcggcaac
      721 ggcgctgatc caaaaacgga tgtcggaccc gttatcaacg gggatgcggt cgagaaggtg
      781 atgaactata tccgcatcgg acgcgatgaa gatggggcta cgttggcttg cggtggaaaa
      841 aggattacac gcggtgatta tgattacggc cactttattg agccaacagt cttttcggat
      901 gcctcaccgg acatgcgaat ctctcaagag gagatcttcg gacccgttac tactgttatt
      961 cccaccaact cgcttgagga agcgattcgg attgccaacg gtgttcgtta cggattgtcg
     1021 gcggcgattt acacgaagga cgtcaatcgt gccttccgtg cgatgaacga cttgtacaca
     1081 ggtatcttct acgttaacgc ctcaacaatt ggcgccgaag ttcatctccc gtttggtgga
     1141 accaaagcaa ccgggaatgg acatcgcgaa gccggaaccc aggtcctgga tatcttctct
     1201 gaatggaagt ctatttatgt cgacttcagc ggcaagctgc aacgagcgca gattgatgcc
     1261 gttgaagcgc cccagtaaca ccaatcgcaa tttcacattt ccttattaaa gccggaggat
     1321 taaagccgtg attatcggtc tgc
//
LOCUS       DATCGC010001380         2576 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_187507, whole genome shotgun sequence.
ACCESSION   DATCGC010001380 DATCGC010000000
VERSION     DATCGC010001380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2576)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2576)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2576
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187507"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1545
                     /locus_tag="VIJ87_13335"
     CDS             <1..1545
                     /locus_tag="VIJ87_13335"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY5445422.1"
                     /translation="AIVESTEDAIIGLDLQGTIKSWNAGAELLYLYTAQEMVGEHVSR
                     LIPPERSNDESQIMSELHGGHRVEHYETVRVAKDGRRIDVSLTISPIKDSSGVVVGAS
                     KIARDISDRKRLDQERESLLKREHAARDEAEIANRVKDEFLATLSHELRSPLNAIVGW
                     ASVLRKGAKTPEDIDRAIEIIDRNARLQARLIDSVLDVSRIVSGKFQMDSRPVNLLEI
                     LDAAVDSMKPTADQKNIRLVRIFDSKAAPVSGDSSRLQQVFWNLLSNAVKFSPKGSEI
                     TVELRYASSAEVIVRDQGRGIEADFLPHVFDRFRQADSSTTRRYGGLGLGLAIVRHLV
                     ELHGGRVKAESEGKDQGAAFTVFLPLLSGTPVIDRDVDALAGRTIERAAGQQVLQNVR
                     ALVVDDESDARELLQQVLLGYGAEVKVADSAMSALRMLEEWKPEVLLSDISMPDVDGY
                     SFIRQVRKHNNGGMAAIALTANARLEDRDRALAAGYQSHLPKPVDESQLILTIVQLIG
                     RTMAVD"
     gene            1629..2435
                     /locus_tag="VIJ87_13340"
     CDS             1629..2435
                     /locus_tag="VIJ87_13340"
                     /inference="COORDINATES: protein motif:HMM:NF015402.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BtpA/SgcQ family protein"
                     /protein_id="HEY5445423.1"
                     /translation="MNPIFTNSKPVIAVIHIGALPGTPRNTQTVSGLVESARREARLY
                     RESGVDAVMIENMHDVPYLRGEVGPEIVAAMTAIGSEVKAECQLPVGIQILAGANIEA
                     MAVAHAAGLDFIRAEGYAFAHVADEGFIQSSAAKLLRYRRMIGATNVQVWTDVKKKHS
                     AHAITADVSLGETAETVEFMGADCVIVTGNATGHAPQIKDVQEAKAHCHLPVILGSGI
                     TPDNVNEFYNYADGFIVGSYFKVDGHWANVVDPARVSAFVKVIDKLRGTS"
BASE COUNT          621 a          604 c          775 g          576 t
ORIGIN      
        1 gcgatcgtcg agtctacgga ggacgcaatt attggtttgg atttgcaggg cacgatcaag
       61 agttggaacg cgggcgctga gctgctttat ctgtacacag cacaggaaat ggttggcgaa
      121 catgtttcgc ggctgattcc accggaacgt tcaaacgacg agagtcaaat catgtccgag
      181 ttgcatggtg gtcaccgagt tgagcattac gaaactgtgc gagtcgcaaa agatggccgg
      241 cgaatcgacg tgtcgctaac catttcacca atcaaggatt caagtggcgt ggtagttgga
      301 gcgtcgaaga ttgcacgtga catcagtgat cgaaagcgcc tggatcagga gcgtgagagt
      361 ctactgaagc gtgaacacgc ggcgcgcgat gaagcggaga tcgcaaatcg cgtcaaagat
      421 gagtttctcg ctaccttgtc gcatgagtta cggtcgccgc tcaacgcgat tgtgggctgg
      481 gcaagtgtgc tgcgcaaagg cgccaagact ccagaagata tcgaccgagc aattgaaatc
      541 attgatcgaa acgcccgact acaggcacga ctgatcgaca gcgtgctcga cgtgtcacga
      601 atcgtgtccg gtaaattcca aatggactcg cgaccagtga acttattgga gatcctggat
      661 gccgcagtcg actcaatgaa accaaccgcc gatcaaaaga acatacgatt ggtacgcatc
      721 ttcgattcga aggcggcgcc ggtatcgggt gattcgagtc gactacaaca ggtgttttgg
      781 aatttgttgt caaacgcagt gaagtttagt ccgaaaggaa gtgaaatcac ggttgagttg
      841 cgatacgcga gttcggctga ggtgatcgtc agggaccagg gccgaggtat cgaggccgat
      901 tttctaccgc acgtcttcga tcgttttcgt caggcggatt cgagcaccac tcgccgttac
      961 ggtggcctgg gtcttggcct tgcaatcgtt cgtcacctgg ttgagctaca cggcggacga
     1021 gtgaaggccg agagtgaagg gaaggatcaa ggcgcggcat ttactgtttt cttgcccttg
     1081 ctatccggga cacctgtaat agatcgcgat gtcgacgctc tcgcaggaag aacgattgaa
     1141 agagcggcag gacagcaggt gttgcagaac gtcagagcgc tggtcgttga cgacgaaagt
     1201 gacgcgcgcg agttgttgca gcaagtgttg ttgggatatg gcgccgaggt gaaggtcgct
     1261 gactcggcga tgtccgcact gcggatgttg gaagagtgga agcctgaagt gctgttgtca
     1321 gacatttcga tgccggacgt cgacggttat tcattcatca ggcaagttag aaaacacaat
     1381 aatgggggaa tggcggctat tgcgttaaca gcaaatgcgc gactcgagga tcgtgatcgt
     1441 gcgctggccg ccggttatca gagtcacttg ccgaagccag tggacgagtc gcagttgatc
     1501 ctgacgattg ttcaactcat tggacgaaca atggcagttg actagagtgt ccgatagact
     1561 tcagtttgtc gtggtctacg ggagaatcag ccacagatga catggatcca cacaaataga
     1621 actcccaaat gaatcccatc ttcaccaact caaaacccgt catcgccgtc atacacatag
     1681 gagctttacc tggcacgcct cgcaacacac aaaccgtttc cgggttagtt gagtcagcaa
     1741 ggcgtgaagc gcggttgtac cgtgaatccg gcgtggacgc ggtgatgatt gaaaacatgc
     1801 acgacgttcc ttatctgcgt ggcgaagttg gtccggagat tgtggcagcg atgacggcga
     1861 ttggatctga agtgaaagct gagtgccaac tgccggtcgg gattcaaatt cttgccggag
     1921 caaatatcga agctatggcg gttgcgcacg ccgctggtct ggatttcatt cgggcggaag
     1981 gttacgcgtt tgcccacgtt gccgacgaag gtttcattca gtcatcggcg gcaaagcttc
     2041 tgcgctaccg acggatgatt ggagctacaa acgtgcaagt gtggaccgac gttaagaaga
     2101 aacactcagc gcacgcgatt acagcggatg ttagtctggg cgagacagca gagacagttg
     2161 agtttatggg tgctgattgt gtgattgtga ctggcaacgc cactggacac gcgccacaga
     2221 ttaaagacgt ccaggaagca aaggctcatt gtcatttgcc ggtgattcta ggttccggaa
     2281 taactccgga taacgtcaac gagttctaca actacgccga cggtttcatt gtgggttctt
     2341 atttcaaagt tgacggccac tgggcgaatg tggttgatcc cgcaagagtg agtgcgttcg
     2401 tcaaggtgat tgacaagctg cgtggaacct catgatctcc gcgccattga gttgcggctt
     2461 tgccgccttt cgtgcggaaa gtctccggct ttccgtaacg tcacttcaaa aggagaggct
     2521 tcgcctcggg cggcgtagcc gccaaacggg tcagggcttg acgcaaagcc agaggc
//
LOCUS       DATCGC010001381         1146 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_187517, whole genome shotgun sequence.
ACCESSION   DATCGC010001381 DATCGC010000000
VERSION     DATCGC010001381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1146)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1146)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1146
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187517"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1079
                     /locus_tag="VIJ87_13345"
     CDS             <1..1079
                     /locus_tag="VIJ87_13345"
                     /inference="COORDINATES: protein motif:HMM:NF024600.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445424.1"
                     /translation="LWLSDYYNNWLRLCRRGVASKLHNNTSGKPEAFRTESGTAAKSH
                     TLPRSGTDLRTVGGPLMRTLKSRFPTILMLLASLAITSFAQTTETKPQPAPVKTTTTE
                     VSFKSFDGYDMFGKLTLPDTPGRHPIVIYAQTAEGMTVDMKRPGGKNGTFNYFDLYRE
                     KLPEMNVGFFGYEGRGIRMGDSPPRYEKIDWDIYNTSTLENKVRDLMSAIEVVRKQKG
                     VDTSQIFLIGASEGTLLAAEAASRVPKQVKGLMLYGVITSNMRENYKYIVTDGAYGAY
                     LTFFDSDKDGKISKEEFEQDRAGFRKRSLSGVNFTVFDRNNDGVFTVDERRELSAGLV
                     QAADTKQLGSAKCLAQNLGCCRDT"
BASE COUNT          310 a          301 c          287 g          248 t
ORIGIN      
        1 gcctctggct ctccgactac tacaacaatt ggttgcggct atgccgccga ggcgtagcct
       61 caaagcttca taacaacacc tccggaaagc cagaggcttt ccgcacggag agcggcacag
      121 ccgcgaaaag ccacacgcta ccgcgtagtg gtactgacct cagaacagtc ggaggaccat
      181 tgatgcgcac tctcaaatcg cgctttccca cgatccttat gctcctcgct tccttagcga
      241 tcactagttt cgcccagaca acagaaacga aacctcagcc cgcgcccgtc aagacaacta
      301 ctaccgaagt ttccttcaag tcgttcgacg gttacgacat gtttggcaaa ctaactcttc
      361 cggatacacc ggggcgtcat ccgatcgtca tctatgcgca aactgccgag ggaatgacag
      421 tcgatatgaa aagacctggc ggcaaaaacg gcaccttcaa ctatttcgat ctctatcgcg
      481 aaaaacttcc ggagatgaat gtcggctttt ttggctatga aggccgaggg atccgaatgg
      541 gcgatagtcc gccacgttac gaaaagatcg attgggacat ctacaacacg agcacgcttg
      601 aaaacaaagt aagagatcta atgtcggcca ttgaagttgt gcgaaagcaa aaaggtgtcg
      661 atacgtcgca gatctttctt atcggtgcga gtgaagggac cttgctcgcg gctgaagcag
      721 cgtcgagagt gccgaagcaa gttaagggct taatgcttta tggcgtgata acaagcaaca
      781 tgcgcgagaa ctacaagtac atcgtgactg atggcgcgta cggggcttac ctcaccttct
      841 tcgatagcga caaagacgga aagatttcaa aggaagagtt cgagcaggac cgagccggct
      901 ttcgaaagcg gagtctctct ggagtcaatt tcactgtatt cgaccgaaat aacgacggcg
      961 ttttcacagt agacgaacgt cgcgaattgt ctgccggtct cgttcaagcg gctgacacga
     1021 aacaattggg aagtgctaaa tgcctggctc aaaatctcgg ctgctgtcgc gacacctaag
     1081 ggttggtttc aggatcactt tgctcacaaa ccgatctggg aattcctttc gaaactcaat
     1141 caacca
//
LOCUS       DATCGC010001382         3138 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_151968, whole genome shotgun sequence.
ACCESSION   DATCGC010001382 DATCGC010000000
VERSION     DATCGC010001382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3138)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3138)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3138
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151968"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(132..2321)
                     /locus_tag="VIJ87_13350"
     CDS             complement(132..2321)
                     /locus_tag="VIJ87_13350"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HEY5445425.1"
                     /translation="MNNPAVRVGVASAILALLTVTTLAQPRRLLTPQDILRVATVSDA
                     QISPNGAWVVYTVSTTADDKTINTLWLASAGSGSVSYAAPITPGRRVPYVDWSELRTS
                     PTPLLASGWNASTPRWSPDSSTIAFISNHDEQEGLWTVKVDRREPRFIAGIQSTNFFI
                     TYAGETYSWSPDSKRIAFISATPEAPEGSPARRSDDPRVIDRIQYKSRTALSDNKRSH
                     VWIVDVERLEPRQLTSGAFYDHAVSFSPRGDEIVFLSNHEADPDANNNSDIFAVDIGG
                     QVRQITETKGCEYDPSWSPDGKWIAYTATKRDVTTIDSVAEDTHVWVIPASGGAGREL
                     GGELNRRERSPQWSSDSRSIFFLAGDKGYATIFRVGLDGGKVSRFSLFVLEGELGGVF
                     DLDDSKFRVDTNSVTSLAQPFQITGFSISRRGGTSGETSVPFVFTLGTALRPAEVWSG
                     LGSSVPLRRLSAHNDGLVRSMRFVIPEEFTFSSFDGTPIQAWIMRPPGCREDRKCPLI
                     LSIHGGPHGSYGWSFNANFQAYTGRGFAVLYLNPRGSNGYGQKFSDGTINEWGGGDYK
                     DLMMGVDESLKRYSWADGNRLGVTGGSYGGFMTNWVITQTPRFRAAVASASLSNLISF
                     YSTSLYQDLVHVEFGGYPWDNFDLLWQWSPLRYVRQVQTPTLFLHGENDNDVHITQAE
                     EMYMGLKRRGVDSVLVRYPREGHGLREPKHRVDALERTISWFEKYLK"
     gene            complement(2478..3050)
                     /locus_tag="VIJ87_13355"
     CDS             complement(2478..3050)
                     /locus_tag="VIJ87_13355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445426.1"
                     /translation="MTSFRFTIQVSLLVLVACVAVSAQTGTDKQFAKDGLVFDYPAGW
                     TLQDDSDRDAQQLTLARAANDVQIRLFAHRGRVSAEKMADAKKSFIDPYVVSTGKQFV
                     AMGAKPTQAPDSTQIGGVEAEGIAITASLGGEAGAAKIYWALVGNRVVIMTYFGPDKE
                     LKQFQAAWDLVRNSLKIEDPKAAPKATPKP"
BASE COUNT          772 a          841 c          777 g          748 t
ORIGIN      
        1 attcttgttt cagacgtttg ttgtttgcca taacgaagat ccaatgtccg ataagcctta
       61 gcttgtcgct ttcttgttta ggacgtccta gtcgaagata acgacaagta aaaagcatat
      121 cggacataac actacttcaa atacttttca aaccacgaaa tcgtccgctc gagcgcatcc
      181 actcgatgct tcggttcgcg tagtccatga ccctcacgcg gataacgcac caagacagag
      241 tcgacgcccc ggcgtttcaa ccccatgtac atctcctcag cctgggtgat gtgaacatcg
      301 ttatcgttct ctccatgaag aaacaacgtc ggagtttgca cttgccgaac ataacgtaac
      361 ggcgaccatt gccagagcag atcaaaattg tcccagggat aaccgccaaa ctcaacgtgc
      421 accagatcct gataaagcga agtcgagtag aaactgatca gattgctgag actggcggag
      481 gccactgccg ctctgaaacg tggggtttgg gtgatcaccc agttcgtcat aaagccacca
      541 taactgccgc ctgtgacccc aagacgattt ccgtcggccc atgagtaccg ttttagagat
      601 tcatcgacgc ccatcatcag gtctttgtag tcgccaccac cccattcgtt aatggtgcca
      661 tctgaaaact tttggccgta tccattcgaa cctcgcggat tcaaatacag aacggcgaac
      721 ccacggcctg tatatgcttg aaagttagcg ttgaaggacc aaccataact cccatgcggt
      781 cctccatgga tgctcaaaat taacggacac ttgcggtctt cacgacaacc cggcggacgc
      841 ataatccagg cttgaattgg agtgccatcg aaactcgaaa acgtaaactc ttcagggata
      901 acaaaccgca tggacctcac aagtccatcg ttgtgggcac tcaatcgacg aagcggcacg
      961 ctgcttccta aacccgacca tacctctgcg ggacgcaggg ccgtccccaa tgtgaaaaca
     1021 aacggcaccg atgtctcacc actggttccg cctctcctgc ttatgctgaa accagttatc
     1081 tgaaatggtt gggccaagct cgttaccgag tttgtgtcga ctcgaaactt cgaatcatca
     1141 agatcgaata caccgcccaa ctcaccttcc agcacaaaca aagagaatcg gctaaccttg
     1201 ccgccatcca aaccaacgcg aaagatcgtt gcgtaaccct tatcgccggc gagaaaaaag
     1261 atcgagcgac tgtcagacga ccactgcgga cttctttccc tgcgattcag ttcgccacca
     1321 agttctctac ctgcgcctcc tgatgccggg atcacccata cgtgagtgtc ctcagccacg
     1381 ctatcgatcg tcgtcacatc gcgttttgtt gccgtgtagg cgatccactt tccatctggc
     1441 gaccatgacg gatcgtactc gcaacctttt gtctcagtta tctgacgcac ttggccaccg
     1501 atgtcgacgg cgaagatatc ggaattgtta ttcgcatccg gatcagcttc gtggttcgac
     1561 aggaaaacta tctcgtcgcc gcgcggactg aaactaacgg cgtgatcgta aaacgcgcct
     1621 gaagttaact gccttggctc gagcctttcg acatcaacaa tccaaacatg actacgcttg
     1681 ttatcagaaa gcgccgtacg cgacttgtat tggattcgat cgatcacgcg cggatcgtcg
     1741 ctgcggcgtg caggagaacc ttcaggcgct tccggagttg ccgaaatgaa ggcgatgcgt
     1801 tttgagtcgg gagaccacga gtacgtttca ccagcgtaag tgataaagaa attggttgac
     1861 tggatcccgg cgataaaacg tggttcacgc ctgtcgactt tgacggtcca gagtccttct
     1921 tgttcgtcgt gatttgaaat gaaagcgatc gtggaactat caggggacca gcgaggcgtt
     1981 gaagcgttcc aaccactggc tagtaatggg gtcggacttg tacgcaactc ggaccagtcg
     2041 acataaggaa cgcggcgacc tggcgtaatc ggcgcggcat aggaaactga gcctgagccg
     2101 gcactggcta gccaaagcgt gttgatggtc ttgtcgtccg cggttgttga gactgtgtaa
     2161 accacccatg cgccgtttgg tgaaatttgc gcgtcactga cagtcgcgac acgaagaata
     2221 tcttgaggtg ttaataaacg ccgaggttga gcaagggtcg tgactgttag aagagcgagg
     2281 attgctgagg caacaccgac acgaactgct ggattgttca ttagtggtct ctcaaaagaa
     2341 cgcggattat ggagaagtac agctttgatc gtttacagcg acgatatcat ggctccgtta
     2401 ggagtttccc tgcttgtctc cgctagcaag caacgagacg aaactttgga tggttgtgca
     2461 aattgagtgc cgattaccta aggctttggt gtcgcttttg gcgccgcttt cggatcttca
     2521 atctttaggc tgttgcgaac gaggtcccac gcagcttgaa actgcttgag ctctttgtct
     2581 ggtccaaagt aggtcatgat cacgactcga tttccaacca acgcccagta gatcttagcg
     2641 gcacctgctt caccaccaag actcgcggtg atcgcaatgc cctcagcctc cacgcctccg
     2701 atctgtgtgc tgtctggagc ttgagtaggc tttgcgccca ttgcgacaaa ctgtttccca
     2761 gtcgacacca cataaggatc gatgaaactc ttcttcgcgt ccgccatctt ctccgccgag
     2821 acgcggcctc gatgagcaaa aaggcgaatc tgaacatcgt tggcagctcg tgcaagggtc
     2881 aactgctgag cgtcgcggtc gctatcgtct tgcagtgtcc atcctgccgg atagtcgaag
     2941 actagtccgt cttttgcgaa ctgcttgtcg gttccagttt gtgctgagac ggcaacacag
     3001 gcgacgagca ctagaagaga aacctgaatg gtgaaacgaa atgaggtcat gttaagtctc
     3061 cggatattgg atctttatgc tttgaatctg aaatttgaga ttttgagatc tgagatcatt
     3121 atctgaacag ccgtaact
//
LOCUS       DATCGC010001383         1568 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_486118, whole genome shotgun sequence.
ACCESSION   DATCGC010001383 DATCGC010000000
VERSION     DATCGC010001383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1568)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1568)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1568
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_486118"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..269)
                     /locus_tag="VIJ87_13360"
     CDS             complement(<1..269)
                     /locus_tag="VIJ87_13360"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5445427.1"
                     /translation="MAEILIVDDDDVIRDTVFELLSTDYKCDTAETAEQALAKLEAEQ
                     FEVVLTDISLPGLSGRELLSRVLMLYPGTPVIIVSGISDREHAEEL"
     gene            521..949
                     /locus_tag="VIJ87_13365"
     CDS             521..949
                     /locus_tag="VIJ87_13365"
                     /inference="COORDINATES: protein motif:HMM:NF014608.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEY5445428.1"
                     /translation="MGTKNNKAIVRFVDDDLFVGTTPSGHTIALDTDSQRSIAPSPVE
                     LLLVALGSCTAVDVVGILKKKRQNVSHYMVEVSGNRRDDYPRKYTSMKVHHVLTGSNL
                     SAKAVAQAIELSENKYCSVAATLRPTVEIQSSFEIIEVES"
     gene            963..>1568
                     /locus_tag="VIJ87_13370"
     CDS             963..>1568
                     /locus_tag="VIJ87_13370"
                     /inference="COORDINATES: protein motif:HMM:NF024572.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5445429.1"
                     /translation="MHRTLTTLFFLFAATASGIAAEKANVNRFDSPLQQAASEATLAS
                     VRRSDASARDAKGAISKLPPAEHMRRANVYNSNRAFVEARAHWQALITYYPQDSKVPE
                     ALLGIGKSYFLAKDYDDGYPIFNQLAQDYPNTREGREGLNYSAASLLRMERFAESAAR
                     YAEYCDRYPNGERIDTAHLNVIDTLREANKPKDALQWVTRTR"
BASE COUNT          401 a          423 c          385 g          359 t
ORIGIN      
        1 agctcttcgg cgtgctctcg atcactaatt cctgacacga taatcacggg agtaccaggg
       61 tacagcatca ggacacgact gagtaattca cgtccgctca agccgggcaa agaaatgtcc
      121 gtgagtacca cctcgaactg ctccgcctcc aatttagcaa gcgcttgctc agcagtctca
      181 gctgtgtcgc atttatagtc agttgaaaga agttcgaaga ccgtatctcg gataacgtcg
      241 tcgtcgtcga cgatcaggat ctctgccatg atggttctcc cacttactca ccaagggcgt
      301 ctcctgggcg gaagacgtac gagacggcgc cagtgacata ttcggtaaac ggacgaacgc
      361 tttgaggaag cgttaccgcg aacgaatcat agcacacgcc gctggtccaa ctgtgacgat
      421 cacttatcat tactggtttt gactccgact ggtcattcat gcgttctcat caacccgggt
      481 tgatcaagcg tttatgctat ccttgattcg ggagctattg atgggaacta aaaacaacaa
      541 agctatcgtc agatttgtgg acgatgacct ttttgtcggc acgacccctt ccgggcacac
      601 cattgcccta gatacagaca gtcaacgctc aattgcacca tcgcctgtag aacttctgct
      661 tgtagcacta ggttcatgca cagcggtcga cgtcgtcggc atcctgaaaa agaagcgaca
      721 gaacgtcagc cattacatgg ttgaagtatc gggaaatcgt agagatgact atccgcgcaa
      781 atacacgtca atgaaagtgc atcatgtttt gactggctcc aacctttccg caaaagccgt
      841 agcgcaagcg atcgagctct ctgaaaacaa gtattgcagc gttgcagcta cactccgccc
      901 gaccgtagaa atccaatcca gcttcgaaat catcgaagtt gagtcgtaaa tgttttggaa
      961 gtatgcatag aactctcacg actctttttt tcttgtttgc cgctactgca tctggaatag
     1021 cagcggaaaa agccaacgtt aataggtttg acagtcccct ccagcaggcg gctagcgaag
     1081 ccacgttggc gtcagtgcgg cgaagtgacg cttcagctcg cgacgccaag ggcgcaattt
     1141 ccaagctacc ccccgctgaa cacatgcgcc gggcaaatgt ctacaactcc aatcgcgctt
     1201 ttgttgaggc gcgtgcgcat tggcaggcac ttattactta ttacccgcaa gactcaaagg
     1261 tgcctgaagc gttgcttggc atcggcaagt cgtactttct tgccaaggat tacgatgatg
     1321 gttatccgat tttcaatcag ctcgcccagg actatccaaa taccagggaa ggtcgcgagg
     1381 gactcaacta cagcgccgct tccctgcttc gcatggaaag gttcgccgaa tcagccgcca
     1441 gatatgctga gtactgtgat cggtatccaa atggcgagcg catcgacaca gcgcatctaa
     1501 acgtcatcga cacgctacgt gaggcaaaca aaccgaaaga cgcgttgcag tgggtgacgc
     1561 gaaccagg
//
LOCUS       DATCGC010001384         1475 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_87557, whole genome shotgun sequence.
ACCESSION   DATCGC010001384 DATCGC010000000
VERSION     DATCGC010001384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1475)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1475)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1475
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87557"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..762)
                     /locus_tag="VIJ87_13375"
     CDS             complement(<1..762)
                     /locus_tag="VIJ87_13375"
                     /inference="COORDINATES: protein motif:HMM:NF012694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEY5445430.1"
                     /translation="MATFAYVGKTRLGALKKGEVVAKTREEAIEQLRKINIGVTNLQE
                     KALSQGLLGKFGKGGSVKDKDLVVFTRQFSTMINAGLPLVQCLDILSTQSENKFLGKA
                     VGEIKGDVEGGSTFADALKKHPKVFDDLYVNMVHAGEVGGLLDTILLRLAKHIEKAMK
                     LKSAIKSAMVYPSAIIGVAIIVVSILMVWVIPIFAKMFTEMSGGKVGLPGPTQFVIGL
                     SEFMQSYIIFIIAALAGIAYGIKRYYGTANGRVVID"
     gene            complement(989..>1475)
                     /locus_tag="VIJ87_13380"
     CDS             complement(989..>1475)
                     /locus_tag="VIJ87_13380"
                     /inference="COORDINATES: protein motif:HMM:NF013250.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016780 - phosphotransferase activity, for
                     other substituted phosphate groups [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HEY5445431.1"
                     /translation="FIGFLIYERYDPALGVILIAGLTDGLDGTIARIANQRTKLGAYL
                     DPLADKLLLTSGFVTLSVLHLVPLWVAILVVSRDLILLAGALLSRFTESSLDMSPTLI
                     GKGTTLFQLSYIVLIIVVTSRHMEGQLLQPLLYLMVGLTVSSGLHYLYRGVTHLNARE
                     A"
BASE COUNT          396 a          367 c          353 g          359 t
ORIGIN      
        1 atcgatgacg acgcggccat tcgccgtgcc gtaatagcgt ttgattccat aggcgatacc
       61 cgccaacgcg gcaatgatga agatgatgta cgattgcata aattcactga gaccgatgac
      121 aaattgagtc ggtcctggca gtccaacctt cccacccgac atttccgtaa acattttggc
      181 gaaaatgggg attacccaca ccatcaagat actgaccacg atgatggcca ccccgataat
      241 ggccgagggg tataccatgg ctgatttaat cgcacttttc agcttcatcg ccttttcaat
      301 gtgtttcgcg agacgaagca gaatggtatc tagtaatccg cctacttccc cggcgtgcac
      361 catgttgacg tagaggtcat cgaaaacctt cggatgcttt ttcaaggcat cggcaaaagt
      421 agatccgcct tcgacatctc ccttgatttc tcctacggct ttacctagaa acttattttc
      481 agattgcgtt gagagaatat cgagacattg aacgaggggg agcccggcat tgatcatagt
      541 ggaaaactgc cgggtaaaaa cgaccagatc tttatctttg acgcttccac ctttgccgaa
      601 ttttcccaac agtccttgcg agagcgcctt ttcttgaaga ttcgtgacgc cgatattgat
      661 cttgcgaagc tgttcgatgg cttcttctcg ggtcttggca acgacttcac cttttttaag
      721 cgctccaagc cgagtcttac cgacgtacgc aaacgtagcc attctcgttc accttcgcgt
      781 tggacataag gaactcagac gtgtggcacg ttgacagtta agagaaggta gcggtcgcat
      841 ggagcgagag ctgtatcttt tgatatgggg aagcagggag tagcccattt cttagcgctt
      901 atgaacactt acacttctgt ccttgcacct ttgaagtcta gtagaggatg cgtaagttgt
      961 caaccttaca cacttctgga agagaacttt acgcttcgcg ggcattgaga tgggtgacgc
     1021 cacgatacaa atagtgcagc cctgaggaga cggtgaggcc gaccattagg tagagcaacg
     1081 gctgaagcaa ctgaccttcc atatggcgcg aggtcacgac aatgatcaaa acgatatacg
     1141 acaattgaaa caaagtcgtt cctttaccga ttaaagtcgg cgacatatct aatgaggatt
     1201 cagtgaaccg gctcaacaaa gcgcccgcca aaagaatcaa atctcgactc acgacgagaa
     1261 tcgcgaccca caacggcacg aggtgcaaga ccgataaggt gacaaaccct gaggtcaata
     1321 gcaatttatc ggcaagtgga tcgaggtagg ctcccagttt cgtccgttga ttggcgattc
     1381 gagcaatcgt tccatcgaga ccatccgtta atcccgctat gaggatgacc cccaaggcag
     1441 gatcatatcg ttcataaata agaaacccta tgaat
//
LOCUS       DATCGC010001385         1419 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_54053, whole genome shotgun sequence.
ACCESSION   DATCGC010001385 DATCGC010000000
VERSION     DATCGC010001385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1419)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1419)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1419
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54053"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            88..291
                     /locus_tag="VIJ87_13385"
     CDS             88..291
                     /locus_tag="VIJ87_13385"
                     /inference="COORDINATES: protein motif:HMM:NF024139.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY5445432.1"
                     /translation="MTTHVDSATAAKRPQLLKVSDVAQLLNVKPRTIYEMVAQDRIPY
                     RKPPGSNILRFDLEEILEWTRRK"
     gene            367..>1419
                     /locus_tag="VIJ87_13390"
     CDS             367..>1419
                     /locus_tag="VIJ87_13390"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEY5445433.1"
                     /translation="MSVYKRGKGTHWHYYFRVRGVRYRGSIPEARTKQKAEQAESKIK
                     QEIFEKRFELEQKGTDLLSDFLDDVYLPWSKVNKKSWRDDVYMVPMLKAHFEGKALRE
                     ISVQLVERFKTDRMNTPTKKGTARQPATVNRELNLLSSAFSLAVLYDKAEFNPCSKVD
                     LFPLDNLRYRYLLPEEEPRLMAELSGPRAHLRPAVIVALGTGMRLGEQLRMKRSQVDF
                     LRNIVTARKTKNGRPRDIPMNDEVRETLAELCKDKRPDAYVFVSPKDDDERQREVKKG
                     FHTACRLAGIEGLIWKDLRATFGTRLAEAGCDAFTIAQLLGHSDVRVTTRYVRSVEET
                     KRAAVEAIKLSSRKSVH"
BASE COUNT          391 a          347 c          367 g          314 t
ORIGIN      
        1 ccgagcgtga gattgaaacc cctgaaatcg atctcggcgg actgattcat taatgaccaa
       61 ctatttaccc ccgatgaggt tttagcaatg actacacacg tcgattcagc gacagcagcc
      121 aagcggccac agcttttaaa agtgtccgat gttgctcagc tattgaatgt caaaccacga
      181 acgatctacg agatggttgc gcaggatcgc atcccgtatc gcaagccgcc aggctcaaac
      241 attctccgtt ttgatctcga agaaatcttg gagtggacgc ggcgaaaata actgatgact
      301 tgagggatcg atgctgctac catccgcgcg ttctcttggt ggctgcaacc tcatggagaa
      361 caactgatgt ctgtttacaa acgtggaaaa ggcacgcact ggcattacta ctttcgagtg
      421 cgtggcgtcc gttaccgagg ctcaattccc gaggcacgga cgaagcagaa agcagaacaa
      481 gcggaaagta agatcaagca ggagatcttt gagaaacggt tcgagctcga acaaaaggga
      541 accgatcttc tctcagattt tctcgatgat gtttatctac cctggtctaa ggtcaacaaa
      601 aaatcgtggc gcgatgatgt ctatatggtc ccgatgttga aagcgcattt tgagggaaaa
      661 gcgttgcgtg agatttcagt tcagctagtc gagaggttca aaactgatcg catgaatacg
      721 ccaaccaaga agggaacagc acgacaaccg gcaacggtca atcgtgaatt gaacctgctt
      781 agttcggcat tttcacttgc ggtcctgtat gacaaggctg aattcaatcc ttgcagcaaa
      841 gtcgatcttt tcccgctcga taatcttcgc taccgatatt tgctacccga agaagaaccg
      901 agactcatgg ccgaactcag cgggccacgc gcccacctga ggccagccgt gatcgtcgca
      961 ctcggtacag ggatgcgtct tggcgaacag ttgagaatga agcgtagtca agtcgatttc
     1021 cttcgcaaca tcgtaacggc gcgaaagacc aagaacggca gaccgcgaga cattcctatg
     1081 aacgatgaag tcagagaaac actggctgag ttgtgcaagg acaagcggcc tgatgcttac
     1141 gttttcgtta gtcctaaaga cgacgacgaa cgtcagcgag aagtgaagaa gggatttcac
     1201 accgcctgcc gactcgccgg tatcgaagga ctaatatgga aggatctcag agcgactttc
     1261 ggtactcgat tagccgaggc cggatgcgat gcttttacga ttgctcaact cctgggccac
     1321 tccgatgttc gcgtgactac gcgttatgta agatcagttg aagaaacgaa acgcgcggca
     1381 gttgaagcga tcaaactgag ttcccgaaaa agtgtccac
//
LOCUS       DATCGC010001386         2067 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_486138, whole genome shotgun sequence.
ACCESSION   DATCGC010001386 DATCGC010000000
VERSION     DATCGC010001386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2067
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_486138"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(167..1132)
                     /locus_tag="VIJ87_13395"
     CDS             complement(167..1132)
                     /locus_tag="VIJ87_13395"
                     /inference="COORDINATES: protein motif:HMM:NF024946.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HEY5445434.1"
                     /translation="MKTKTQLINPILLGALVLTLCVSFAPRTFAVEGGLGRPISGMQI
                     APFAGVIPPEPGLAVATGDTYYEGSIGGGRTVPIAGLLVANVDMKASFTPIALFYIWP
                     TPTKEWNFASAISFPLAWLEVEANLSLGPFSIRKKESTFGLFDLVFTPIVTSHHFSQT
                     DPLAFSFTFWAPTGSFEKGRLVNLSQNTWTFIPGVAYTKILPEDNIELTGIWQMEFDT
                     EDPATRYQNGILSDLEALAIKRFKNGLGIGFVESWIQQVNDDEGAPPALNGFLGRAFG
                     IGPIVTYSTKVGKSHLDFSARWIHDFDVSNRVAGNGFNFSASVKF"
     gene            complement(1227..1658)
                     /locus_tag="VIJ87_13400"
     CDS             complement(1227..1658)
                     /locus_tag="VIJ87_13400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445435.1"
                     /translation="MNKMILPRDVEFHEDVRLLVYRPRGLVNKAAVNKIISVVGELET
                     MLKEPFNRFSDTVAADVVDLNFEHIIRVSLYRRRFYGNRPPIKSAILATDATLIHYGK
                     VHALLTQGSPINVRVFQDRKEAAQWLGVPIDLLAPEASSET"
     gene            complement(1725..>2067)
                     /locus_tag="VIJ87_13405"
     CDS             complement(1725..>2067)
                     /locus_tag="VIJ87_13405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445436.1"
                     /translation="GVIEGVEAATQEPFNRFSDTLETHEVELNFQYVIQASLHRRLLH
                     KGRAPVKSAILATDSTLIHYARLLVLLTQGSSIRVQVFQDRKEAAQWLGVPLELLAGK
                     SADADQSDSRK"
BASE COUNT          491 a          546 c          550 g          480 t
ORIGIN      
        1 cgtttgatca tctctgccgc ctcaactcct gccggatcga tgtcgccgat aacaactttc
       61 gcgccgttgc gtgcaaagag cagcgctgtc gctcgaccga ttcctcgact cccgccggtg
      121 accaacgcaa ccttacctga aaaatctaac gtaatcgcgg gcacggttag aatttcacgc
      181 ttgcgctgaa gttgaatccg ttacccgcga cgcgattgct gacgtcgaag tcgtgaatcc
      241 agcgcgcgct aaaatcgagg tggctcttac ccaccttggt ggagtacgtg acgattgggc
      301 caatgccaaa tgcgcgccca agaaagccgt tgagcgcggg cggtgcgcct tcgtcgtcgt
      361 tgacctgctg aatccaactc tcgacaaagc caatgcccag tccgttcttg aatcgtttga
      421 ttgccagggc ttccaagtcg gacaggatcc cattctgata acgggtggcg ggatcctcag
      481 tgtcgaattc catctgccag atgccggtca attcaatgtt gtcctccgga agaatctttg
      541 tgtaggcgac gccgggaatg aacgtccagg tgttctggct gaggttgacc agcctgccct
      601 tttcgaacga tccagtcggt gcccaaaacg tgaaactgaa ggccagaggg tccgtttgac
      661 tgaagtgatg gcttgtcacg atgggcgtaa aaaccaaatc gaacagtccg aaggtgctct
      721 cttttttccg gattgagaac gggccaaggg aaaggttggc ctcgacctcg agccaggcca
      781 gcggaaagct aatcgccgaa gcaaagttcc actccttggt cggtgtgggc cagatgtaaa
      841 ataacgcgat tggagtaaat gacgccttca tatcgacatt cgcaacaaga agacctgcta
      901 ttggcacggt ccgacccccg ccgatggagc cctcatagta agtgtcaccc gtagccactg
      961 cgaggcccgg ttcgggtgga atcacaccgg cgaacggagc gatctgcatg cccgaaatcg
     1021 gccggccgag gccgccttcc acagcaaagg tgcgaggggc gaatgaaaca caaagtgtca
     1081 agacgagtgc gcctaacaga attggattaa tcagctgggt ttttgttttc atgttttacc
     1141 tcccctgctc agaacaggag ctagcaaaag caacagagaa attttctcta ctaactctgt
     1201 ttgctcccgt ttgattgttt taatcctcat gtttcactgc tggcttccgg cgccagcaaa
     1261 tcgatcggca cgccaagcca ttgcgcggcc tccttgcgat cctggaatac gcggacattg
     1321 atcggagaac cttgagttag taaggcgtgc actttgccgt agtgaataag ggtagcatcc
     1381 gtagcaagaa tggccgattt gatcggcggg cgattgccat agaaacggcg ccgataaaga
     1441 gaaacgcgaa tgatgtgttc gaagttaaga tcaaccacgt cggctgccac cgtgtcggag
     1501 aatcgattga aaggctcctt caacatggtc tcaagttctc cgacgacact tataattttg
     1561 ttaacagccg ccttgttcac caaaccgcgc ggtctataga cgagcagacg gacgtcttcg
     1621 tgaaactcga catcacgagg cagtatcatt ttgttcattc caatgatctc cacccacacc
     1681 actgcagttg atcaattgtg gtgagtttgt gttttgtttc atgtttactt tctgctgtca
     1741 ctctgatcgg catcggcgga cttccccgcc agcagttcga gcgggacacc aagccattgc
     1801 gcggcttcct tacggtcttg gaatacttgg accctgatcg aagaaccttg agtcagtaag
     1861 accagcaacc gggcgtaatg aataagagtg gaatcggtgg cgagaatggc tgatttaact
     1921 ggcgcacgac ccttgtgcaa aagacgcctg tggagagaag cctgaatcac gtattggaag
     1981 ttgagctcaa cttcgtgagt ttccaacgta tcggagaatc gattgaaagg ctcctgggtt
     2041 gcggcttcaa ccccttcgat aacaccg
//
LOCUS       DATCGC010001387         1359 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_23051, whole genome shotgun sequence.
ACCESSION   DATCGC010001387 DATCGC010000000
VERSION     DATCGC010001387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1359)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1359
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23051"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..951)
                     /gene="gcvPA"
                     /locus_tag="VIJ87_13410"
     CDS             complement(<1..951)
                     /gene="gcvPA"
                     /locus_tag="VIJ87_13410"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: protein motif:HMM:NF001696.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004375 - glycine dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0006546 - glycine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase
                     subunit GcvPA"
                     /protein_id="HEY5445437.1"
                     /translation="MRYIPNSPEERAEMLDSVGLKSAEALFDSIPENLLLRRPLNTPA
                     ALSEIELLAQFEQMGARNTGARRTSFLGGGAYSHYIPTIVDHILSRSEFFTAYTPYQP
                     EISQGTLQTIFEFQTLVCQLTGMEVANASMYDGSTALAEAVLMAERVTKRSKVVAASS
                     IHPQYLEVVKTYVQHAGIALEVIDHDEQTGQTGSSLASAIDDHTAAVVVQSPNFFGCI
                     EDLSSLANAAHAKGALLVVAITEALSLGLLKSPGECGADIVVAEGQSFGVPLSFGGPY
                     VGLFATREKYARQIPGRLVGEAYDKKGRRGFVLTLATREQH"
     gene            complement(954..>1359)
                     /gene="gcvH"
                     /locus_tag="VIJ87_13415"
     CDS             complement(954..>1359)
                     /gene="gcvH"
                     /locus_tag="VIJ87_13415"
                     /inference="COORDINATES: protein motif:HMM:TIGR00527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HEY5445438.1"
                     /translation="VGGTMANVPEDLHYSKDHEWVRVEGDAAVIGITDYAQDSLGDVV
                     YVELPKPGDEFAPSESFGSVESVKAVSEVFTPVSGKVVAINESLADEPESVNSDPYGT
                     GWMIKVQMSNPGEVDSLLTAAEYEDFTKAEKE"
BASE COUNT          320 a          371 c          340 g          328 t
ORIGIN      
        1 gtgttgctca cgcgtcgcaa gtgttagcac aaagcctcgc cgacctttct tgtcgtaagc
       61 ttcacccaca agcctgcctg ggatttgccg cgcatatttt tctcgcgtcg caaacaagcc
      121 aacataggga ccaccgaacg agagggggac cccgaacgac tgaccttcgg caacaactat
      181 gtcagctcca cattctcccg gcgacttaag caaaccgagc gacagcgctt cagttattgc
      241 aacgacaagt agcgcgccct tcgcgtgtgc ggcattagcg agtgaggata agtcttcaat
      301 gcagccgaag aaattcggcg actgaacaac tacggccgca gtgtgatcgt cgatagcgga
      361 ggctaatgaa gaacccgttt gtccggtttg ctcgtcgtga tcaataactt cgagagcaat
      421 tccagcatgc tgcacatagg tcttcacaac ctcgagatac tgcggatgaa ttgacgaggc
      481 tgcgacaact ttgcttcgtt ttgttactcg ctccgccatt aaaactgcct cggccagagc
      541 agtcgatccg tcgtacatcg aagcattggc gacttccatt ccagttagct ggcagaccag
      601 tgtctggaac tcaaaaatcg tctgcagagt tccctgggaa atctccggct gatagggcgt
      661 atacgcagta aagaactctg agcgagacag tatgtgatcg acgatggtgg gaatgtagtg
      721 ggagtaggca cctcccccta aaaagctcgt tcggcgtgct cctgtatttc gagcacccat
      781 ctgctcaaat tgcgccagca gttcgatctc agaaagcgcg gccggagtgt tgagcggcct
      841 tcggagtaat aagttttcag gaattgaatc gaataacgct tcagcagatt tgagcccaac
      901 tgagtcgagc atttccgcgc gctcttccgg cgagttagga atgtagcgca aggttattct
      961 ttctcagctt tcgtaaagtc ttcatactct gccgcagtca acagactatc gacttcgccg
     1021 ggattggaca tttgcacttt gatcatccag cctgtgccat acgggtccga gtttacgctt
     1081 tcgggctcgt cagcaagaga ctcgttaatt gccacgactt tgccagacac aggtgtgaag
     1141 acttcggaaa cggcttttac cgattccact gagccaaacg attcacttgg cgcaaactcg
     1201 tcacctggtt ttggcaattc gacatacacc acatcgccga gcgagtcctg agcataatcc
     1261 gtgatgccga taacggccgc gtcaccttca actctgaccc actcatggtc tttgctgtag
     1321 tgcaggtctt ctggaacgtt tgccatggtt cctccaact
//
LOCUS       DATCGC010001388         1571 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_187624, whole genome shotgun sequence.
ACCESSION   DATCGC010001388 DATCGC010000000
VERSION     DATCGC010001388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1571
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187624"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            385..>1571
                     /locus_tag="VIJ87_13420"
     CDS             385..>1571
                     /locus_tag="VIJ87_13420"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF012630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031012 - extracellular matrix [Evidence
                     IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="matrixin family metalloprotease"
                     /protein_id="HEY5445439.1"
                     /translation="MNHPVSFIVTLALLAGIGAPGRFETRDSYELEPTTQTVRRIKWP
                     KRTIEIAFSNSLLSPGANIKTGSDIVGAARRALARWSSMTNVNFVVTWSAATSVSPAS
                     GGDGISLITIADSFENESFNADSTTGRTRVFFDSETGAIAEADVCINPRPRSEEGADL
                     QFSTDGSPGTYDLEATFTHEIGHLLGLDHSAVLASTMQSRQAFNGTFGLPALTERTLS
                     EDDRQRVRSLYGPKVRLGRIEGRLVDDRLPNIASPLDSVNVWAENVATGRVVASGVTG
                     EDGTYKLDGLTPGQYRLVVTPREDSASSIAQRFRSFEISNQVNVKPELATTVNYNLVP
                     PLGSLPSLNPRMVGLNAELSTVALPVEAGKKIKLYLAGEGIDQVPGANIAVNSPYFTV
                     DPS"
BASE COUNT          372 a          407 c          416 g          376 t
ORIGIN      
        1 ggagatgtac cgatagtggt gacatttacc agggcaagta gcgccactac taccagcaga
       61 tcagacacaa cggcgccgat aatccatatt aattgacggg cagcagctcg gtgcagcagc
      121 tcggtgcagt agctcggtgt agtagctcgg tgcagtagct cggtgcagta gcccgactgt
      181 caaggagggc tttcgagtca actatgatcc agctgagccc aattggtctg ctgcacacgc
      241 acggcccact ttggatcatg cgggtttgag tttttatgga aaccagaggc ccgaaagcgt
      301 ggtaacattc ctaacaagtc gggcgtcctg ttccgattct tcaaggggct aaatcaacaa
      361 cgcgtcctct ccccctgggt tctgatgaat catccagttt cattcattgt cactttggca
      421 ttgctcgctg gtattggcgc gcccggacgc tttgagacac gggattcata tgaactcgag
      481 ccgactaccc aaacggttcg tcgaatcaag tggccgaaac gaactatcga aattgcattt
      541 tcaaactccc tgctttctcc aggagcaaac atcaaaaccg ggagcgatat tgttggcgct
      601 gctcgtcgtg ctctcgcgcg ttggtcgagc atgacaaatg tcaatttcgt ggtgacctgg
      661 tcggcagcta cgtcagtgag tcccgcctca ggtggtgatg gaatcagcct aataacaatt
      721 gctgactcct tcgaaaacga atctttcaat gcagattcga cgacgggtcg aacgcgggtc
      781 tttttcgatt ccgaaactgg tgctattgcc gaagccgacg tttgcatcaa ccctcgaccg
      841 cgttccgaag aaggagcaga tttacaattc tcgactgatg gctcgccggg tacttacgat
      901 cttgaagcaa cgttcacaca cgagatcgga catttactcg gactcgatca ctctgccgtg
      961 ctggcgtcga ccatgcaaag tcggcaggca ttcaatggca cgtttggtct acctgctcta
     1021 accgagcgaa cgttaagtga agatgatcgc caacgcgttc gaagtctgta cgggccaaaa
     1081 gtgcggttgg gccgaattga aggccgattg gttgatgacc ggcttccaaa cattgcgtcg
     1141 ccactcgata gcgtgaatgt gtgggccgag aatgttgcta ccggccgcgt ggttgcgagt
     1201 ggtgtgacag gtgaggatgg cacttacaaa ctagatggac taacaccggg acaatatcga
     1261 cttgttgtca caccgcgcga agattccgcc tcaagcattg cgcagcgatt tcgaagtttt
     1321 gaaatttcaa atcaagttaa cgtcaagcct gagcttgcca caacagttaa ctacaacctg
     1381 gttccgccac taggttcttt gccaagtctt aatccgcgca tggttggact caacgcggag
     1441 ttgtcgacag tagctctacc ggttgaagcc ggcaagaaga tcaaactcta tctggcgggc
     1501 gaaggcattg accaggttcc aggcgccaat atcgccgtta actctcctta cttcactgtg
     1561 gatccttcga g
//
LOCUS       DATCGC010001389         1474 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_418199, whole genome shotgun sequence.
ACCESSION   DATCGC010001389 DATCGC010000000
VERSION     DATCGC010001389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1474)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1474)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1474
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_418199"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..602
                     /locus_tag="VIJ87_13425"
     CDS             <1..602
                     /locus_tag="VIJ87_13425"
                     /inference="COORDINATES: protein motif:HMM:NF044870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HEY5445440.1"
                     /translation="ISIIDPQTLKVVGSIPTGQAESHMLAITHDERRAYTTNVGLGTI
                     SVLDLKTRKSIAVIPVASNVQRISLSVDDKLVFTSDQTKPELVVIDTQTNAVKNRVVL
                     PGIGYGSAATKDGRWLVVALAKANKVAVVDLAAMSVVQTIDVPSAPQFVLIPPDNKFA
                     YVSCDQSGRVAMINLSTWKVEKLIEAGKGADGLAWAQSH"
     gene            complement(775..>1474)
                     /locus_tag="VIJ87_13430"
     CDS             complement(775..>1474)
                     /locus_tag="VIJ87_13430"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF006078.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HEY5445441.1"
                     /translation="HDLRNTPFEKRRKKLESLLKRAESPIHLTPATNDLAIATDWFRR
                     FEGAGLDGVVAKPAAGTYESNKRVMLKVKHERDCDCVVAGFRWHKKGDGTAVGSLLLG
                     LFDDAGDLHHVGVCASFTDKKRQELVQFLSAYRKNALDNHPWKAWAMAESESGRRIPG
                     GQSRWSQGKDLSWEPLRPELVVEVAYDHMQGSRFRHTAQFRRWRTDKKPKDCTYAQLE
                     VVPPHELSAIFGTK"
BASE COUNT          332 a          416 c          379 g          347 t
ORIGIN      
        1 cgatatcgat tatcgatccg caaacattaa aagtcgtagg ctcaattcct accggccaag
       61 ccgagtctca catgctcgcg atcacacacg atgagcggcg cgcatataca acaaacgtcg
      121 gtctcggcac gatttccgta cttgacctga aaacgcgcaa gtcgattgcg gtgattcctg
      181 tcgcctccaa cgttcaacgt atttcgcttt cggtagacga caagctggta tttacttccg
      241 atcagacaaa gcccgagtta gttgttatcg acacacaaac caacgcagtt aagaacaggg
      301 ttgtgctgcc aggtattggt tacggttcag ctgccacaaa agatggacgc tggctcgtcg
      361 tcgcgttggc aaaggcaaac aaggtagcgg tggtcgatct tgctgcgatg agtgtggtcc
      421 agacgattga cgttccgagt gccccgcagt ttgttttgat cccgcctgat aacaagttcg
      481 cctacgtctc ctgcgaccag agtggacgag ttgcgatgat taatctttcg acgtggaagg
      541 ttgaaaagct cattgaagcg ggcaaaggcg ccgatggtct agcctgggct caaagccatt
      601 aacgattccc ttcagtgacg cctttgaact aacgggcgcc ctcttctggg actgcaggtg
      661 tcctcgcctg cattcgtcgc cactgagtat gccttagctg aacggtaagc aggcggggac
      721 gcctgccgtc ccagaagagc acgcccatta gttcaaaggc gtcactgaag gggatcactt
      781 cgttccaaaa attgcggaca actcatgcgg cggcacaacc tcgagttgcg cgtaggtaca
      841 gtctttcggc ttcttgtcgg ttctccatct gcgaaactgc gcggtgtgtc gaaagcgact
      901 gccctgcatg tgatcgtagg cgacttcaac aaccaactca ggccgcagtg gttcccagga
      961 caagtccttg ccctgactcc atcgactctg gccacccgga atacgtctcc cactttcaga
     1021 ctcagccata gcccatgctt tccatggatg gttgtcgagc gcattctttc tgtaagccga
     1081 taggaattgg actagctcct ggcgcttctt atcagtgaag ctggcgcaaa ctcccacgtg
     1141 atgcaggtca cctgcatcat caaacaatcc caacaacaat gagccgaccg cagtgccgtc
     1201 ccctttcttg tgccagcgaa atcccgcgac aacgcaatcg cagtctcgtt catgtttgac
     1261 cttgagcatg actcgcttgt tcgactcata cgttccggca gcaggcttgg caaccacgcc
     1321 gtcgagccca gctccttcaa aacgacgaaa ccaatcggtg gcgatcgcga gatcgttggt
     1381 cgccggtgtt aagtgaatcg gactctctgc gcgtttaagc agtgactcca acttcttgcg
     1441 gcgcttttca aatggagtgt tgcgtaagtc gtgc
//
LOCUS       DATCGC010001390         1015 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_187668, whole genome shotgun sequence.
ACCESSION   DATCGC010001390 DATCGC010000000
VERSION     DATCGC010001390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1015)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1015)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1015
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187668"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..658)
                     /locus_tag="VIJ87_13435"
     CDS             complement(<1..658)
                     /locus_tag="VIJ87_13435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445442.1"
                     /translation="MKRLFLIAPLLLLFATSVVAQDSSKLVESTDSKLIYADFQNAQN
                     GRPVSSRGGQTRLNRYSQNSANPPQFSGMENVDPPAPALARVTDEDRAAAFNYEMRIP
                     NEWEGVSLEVFGQPEKDGKLVADDVSGFKYITFRLFAKGPRMIRIELITRGHGANLDG
                     GYPMANIRVQEGFNTYKLKLDSFNQPEWATQLDLKRDVLKKLTSVQIGVTCDKCIIEK
                     G"
     gene            complement(686..>1015)
                     /locus_tag="VIJ87_13440"
     CDS             complement(686..>1015)
                     /locus_tag="VIJ87_13440"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: protein motif:HMM:NF012585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HEY5445443.1"
                     /translation="HARLGGIGEVLARKIASETPYEARSVMLGHPQRGGPPSPVDRVM
                     GLMFGARAAEAVAAKQFGMMISARGIAPACDLSLVDIREVLGKINTVDVAVHYDTERY
                     HLKGIGM"
BASE COUNT          234 a          287 c          237 g          257 t
ORIGIN      
        1 tccctttctc gattatgcac ttatcgcacg tcacaccgat ctgaactgaa gtcagtttct
       61 tcaagacatc gcgcttcaga tccaactggg tggcccactc cggttgattg aatgaatcaa
      121 gtttcagttt gtaagtattg aagccttcct gcactcggat attcgccatc ggataacccc
      181 cgtccagatt tgcaccatgg ccgcgagtaa ttaattcgat gcgaatcatc cgaggtccct
      241 tcgcgaacag acggaacgtg atgtatttga atccgctaac gtcgtcggca acgagtttac
      301 cgtccttctc cggctgacca aacacttcga gactaactcc ttcccactcg tttggtatgc
      361 gcatttcata attgaaagct gcggctcgat cttcatctgt gactcgagcg agtgcgggtg
      421 cgggcggatc gacgttttcc attccgctga attgcggagg attggcggaa ttctgtgaat
      481 accgatttaa gcgagtctgg ccgccacgac tactcaccgg ccggccgttt tgtgcgtttt
      541 ggaagtcagc gtaaataagc ttcgaatcgg ttgattcgac aagcttcgac gagtcctgtg
      601 cgacgaccga cgtcgcgaac agcagcaata gaggtgcaat caagaataga cgcttcatcg
      661 catttctcct cgtgaatcat tgatttcaca tcccaatacc tttcaaatga taccgctctg
      721 tatcgtaatg aacagccacg tcgaccgtgt tgatcttgcc tagtacttcg cggatatcta
      781 caagtgacaa gtcacatgct ggtgcgatac cacgagcaga aatcatcatc ccgaattgct
      841 tcgcggcgac agcttctgcc gcccgcgcgc caaacatcaa gcccataacc cgatccaccg
      901 gactgggtgg accacctctt tgcggatgac ccagcataac cgaacgcgct tcgtagggcg
      961 tttcgctggc aatttttcgc gcaagtactt ctccaattcc gcccagacgc gcatg
//
LOCUS       DATCGC010001391         1162 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_187690, whole genome shotgun sequence.
ACCESSION   DATCGC010001391 DATCGC010000000
VERSION     DATCGC010001391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1162)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1162)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187690"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(240..692)
                     /locus_tag="VIJ87_13445"
     CDS             complement(240..692)
                     /locus_tag="VIJ87_13445"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HEY5445444.1"
                     /translation="MNFVRWTPFSEVGLLQNQMNRLFETALQGRSGDSTNGTTARIPA
                     ADIYESVNELLVTLDLPGIDPKMVDVRVENNVLTIRGERKLDGKQNTENFHRVERSYG
                     PFGRAFTLSTAVDAEKIHATYKAGVLSIALPKAETAKPKRIQIAATAM"
     gene            849..>1162
                     /locus_tag="VIJ87_13450"
     CDS             849..>1162
                     /locus_tag="VIJ87_13450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445445.1"
                     /translation="MTNKEEIYDLIKDHPEGLDDDDIAQMTGIQPRQQVQQLCNQLAD
                     SQRIRRHSVGKEGKRRKIHNFPGAPGGAVDLSRSEAHVEKWRRRLAALVAATGRTESD
                     LM"
BASE COUNT          290 a          292 c          303 g          277 t
ORIGIN      
        1 agtgtcatgt caagaaaagg tgtcatgtca tgaaaaggtg tcgaaccaat cagattcatg
       61 gtttgatcct ccataaaaag atttctgtaa cgatccatta acgacctatg cattgagtgg
      121 cgtctctcgc cccccggcca atcagaagct actggtcctc cccgcgcggg agcgtcacgt
      181 gcctcttccg atatcggata gatggccgaa gttgccaatg caacctcggc cgtctcaaat
      241 tacatggcag tcgccgctat ctggatcctc ttcggtttcg ccgtctcagc tttaggcaac
      301 gcgatgctga gcacgcccgc tttataggtc gcgtgaatct tttctgcatc gacagctgtg
      361 gaaagtgtga aggcgcgacc gaacggcccg tacgaacgct caacgcggtg aaagttctct
      421 gtgttctgtt tcccatcgag cttgcgctca ccgcgaatcg tgaggacgtt gttctccaca
      481 cggacatcga ccatcttcgg atcgattccc ggaagatcga gagtcacaag gagctcgttc
      541 accgattcgt agatatcggc cgcagggatc cgggcggtag ttccattggt ggaatcaccc
      601 gaccgccctt gaagggcggt ttcgaagagg cgattcatct gattctgaag cagacctact
      661 tcactgaagg gtgtccaacg cacgaaattc atgggcattc tcctttctat taagtacgtt
      721 ttagaatcaa tttagacaat gtttaaagcc gtctaaaaca taagtcaagc attttctatt
      781 gacgataatg ggctaaaaaa gtgagaaaag cttcttttag gttctatttt gatggtattg
      841 ttgggcccat gaccaataag gaagagattt acgatctaat aaaggaccat cccgaaggtc
      901 tcgacgacga cgacattgct cagatgacag ggattcaacc gcgacagcag gtgcaacaac
      961 tgtgcaatca gttggcagat tcgcaacgaa ttcgccggca ctctgtgggg aaggagggaa
     1021 agcgtcggaa gattcacaat ttccccggag caccaggagg agcggtagat ctctcccgta
     1081 gcgaagcgca tgttgaaaag tggcggcggc gactagccgc cttagtggcc gctaccggcc
     1141 gcaccgagtc tgatctaatg ga
//
LOCUS       DATCGC010001392         1206 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_87651, whole genome shotgun sequence.
ACCESSION   DATCGC010001392 DATCGC010000000
VERSION     DATCGC010001392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1206)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1206)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1206
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87651"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1206)
                     /locus_tag="VIJ87_13455"
     CDS             complement(<1..>1206)
                     /locus_tag="VIJ87_13455"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5445446.1"
                     /translation="VLVTLASVLGIALAFGGLKVLLHFAPDSVPRTEEIGVGLPVLAF
                     TVAVSIVAVFLFGLAPLAQVSERNLANWIRGAGQRSIRGGGQTLRKGLVIAEISLAVI
                     LVIGSGLMIRAFWKLQQVNTGFEPGGVVSFSLNLPGSKYKTPDRLQFVNTLQQKLSSI
                     PGVTSASAASGIPPLRRINANDTEIEGYVQTPDSPAQNVDYWNVVGTDYFKTMKIKVL
                     EGRGFEPQDDSDTAMKAVVVNQALAKRFWKGSPLGRRVNPGFGDPKVWCTIVGVVEDT
                     KNAGMDKPAGPELYLQVRQVADFLGGNMNYVVRTSTDSLAIESSIRSVVREMDPSLPV
                     YNLKTMNDVVSKSMVQPRFLALLLATFSGIALFLAAIGIYGVMAYSVAQRTQEIGVRM
                     ALGAQPLHVL"
BASE COUNT          290 a          357 c          297 g          262 t
ORIGIN      
        1 caatacatgg agcggttgcg ctccgagtgc catgcgcact ccgatctctt gtgtccgctg
       61 cgcaaccgaa taggccatga caccgtagat accaattgcc gccaggaaca acgcgattcc
      121 ggaaaacgtc gcgagtagta acgcgaggaa acgcggttgg accatcgact tcgacactac
      181 gtcattcatg gtcttcagat tatagacggg caaactcgga tccatttcgc gaacgacgct
      241 gcgtatcgaa ctctcaatcg ctaaggagtc agtcgaggtg cgaacgacat aattcatgtt
      301 tcctccgagg aagtccgcca cctgtcgcac ttgcaagtag agctcgggcc cggctggctt
      361 atccatcccg gcgttcttcg tgtcttcaac cacgccgacg atcgtgcacc aaactttggg
      421 atcgccgaac cctggattca cgcgccggcc aagaggactc cccttccaga acctcttggc
      481 gagtgcctgg ttaacaacca ctgctttcat cgcagtgtcg ctatcatctt gcggctcaaa
      541 gccgcggcct tccaacactt tgatcttcat ggtcttgaag tagtcagtgc cgacgacgtt
      601 ccagtagtcg acgttctgcg ctggactatc tggcgtttgc acataacctt cgatctctgt
      661 gtcgttcgcg ttaatgcggc gtagcggagg tatcccactc gcggccgacg ccgaagtaac
      721 tccgggaatg ctgctgagtt tttgctggag tgtgttgaca aattgcagtc ggtcaggcgt
      781 cttatatttc gatcccggaa gattcaagct gaagctgacc acgcctccag gctcgaatcc
      841 agtattgact tgttgcaact tccagaacgc gcgaatcatt agccccgacc caattaccag
      901 aatcactgcg agtgaaatct ctgcaataac cagccccttg cgaagtgtct gcccaccacc
      961 tcgaattgac cgttgacccg caccacgaat ccagttagca aggttacgtt cactaacctg
     1021 ggctagtggt gcaagtccaa acagaaagac agcaacgatc gacactgcga ccgtaaacgc
     1081 gagcacaggt agaccaacac caatctcttc cgtacgcggg acactatcag gcgcaaaatg
     1141 gagtagaact ttcaaaccac cgaacgcgag agcaatgccc agtaccgatg ctagcgtgac
     1201 cagcac
//
LOCUS       DATCGC010001393         1503 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_385553, whole genome shotgun sequence.
ACCESSION   DATCGC010001393 DATCGC010000000
VERSION     DATCGC010001393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1503
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_385553"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1456)
                     /locus_tag="VIJ87_13460"
     CDS             complement(<1..1456)
                     /locus_tag="VIJ87_13460"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 protein"
                     /protein_id="HEY5445447.1"
                     /translation="MRKLSALVLLLTLVSNFAFAQSTSSVRTPSPAEMNARVETIVTQ
                     LTLDEKLDLLGGVDGFFIRDVPRLNLPRLKMADGPIGVRNFGPATAFAGGIALTASWN
                     TTLAELVGRELGRDSRAKGVHFLLAPGVNINRAPMNGRNFEYFGEDPFLASRMAVNYI
                     NGVQSQGVSATVKHFLGNNSEFDRHKTDSIIDERALREIYMPAFEASVKEAHVGAIMD
                     SYNLTNGLHMSQNKYLLTDVVKKDWGFDGLIMSDWSATYDGVEATNAGQDLEMPSGLY
                     MNRQTLKAAIEQGKVSIDTINDKVRRIIGTAARFGWLDKSQTELSVPRYNPEGRKIAL
                     EAAREGITLLKNEGDLLPLNKAQTKTILVVGPNAYPAVGVGGGSAAVEPFASISVLEG
                     LSNYSGGAIKVMYDRGLQTYSDLAIATDFTTAATNGQAGIQAEYFETPELTGKPLVGR
                     IEQHIDFGTGARLLFPEQTLSSRWTGYFTPQTPGS"
BASE COUNT          363 a          375 c          383 g          382 t
ORIGIN      
        1 aagaacctgg cgtttgcgga gtgaagtaac ctgtccagcg tgaagagagt gtttgttccg
       61 gaaacagtaa gcgagctcca gtaccgaagt cgatgtgttg ctcgatacgc ccgacgagcg
      121 gtttgccagt caactcaggc gtttcaaaat actcagcttg aattcctgcc tgaccatttg
      181 ttgctgcagt agtgaaatca gtagcgattg ccagatcgct ataggtctga agaccacggt
      241 cgtacattac tttgattgca ccacctgagt aattactcaa tccttcaagg acactgatcg
      301 acgcaaaagg ctcgaccgca gcactaccgc cgccgacgcc aacagcggga taagcgttgg
      361 gaccgacgac aagaattgtt ttcgtttggg ctttgttgag cggaagcaga tcgccttcat
      421 tctttaacaa ggtgattcct tcacgagcgg cttcgagagc aatctttcga ccttcaggat
      481 tgtaacgagg aacagacaat tcagtttgac tcttatcgag ccatccaaat ctcgcggcgg
      541 tgccgatgat gcgtcgtacc ttgtcgttga tcgtatcgat tgaaactttg ccttgttcga
      601 tagcggcttt caaggtttga cgattcatgt agagacctga gggcatctcg agatcttgtc
      661 cggcgtttgt cgcttcgaca ccgtcgtagg tcgctgacca atcggacatg attagcccgt
      721 caaagcccca gtccttcttc accacatcgg tcagcagata tttgttttgc gacatgtgca
      781 aaccgttcgt gaggttatag gaatccatga tggcgccaac atgagcttct ttcactgagg
      841 cctcaaaggc aggcatgtag atctctctaa gcgcgcgttc gtcgatgatt gaatcagtct
      901 tatgtcgatc aaactcggag ttgtttccca aaaagtgttt gactgttgcg ctgacgccct
      961 ggctctgtac gccgttgatg tagttcactg ccattcgcga agcgagaaag ggatcttcgc
     1021 cgaagtattc aaagtttcta ccgttcatcg gcgcgcggtt gatgttcacg ccaggagcga
     1081 gcaaaaagtg aacgcctttc gcgcgcgaat cgcgtccgag ttccctgcct acaagctctg
     1141 ccaaagttgt gttccaactg gcagtcaaag caataccacc ggcaaaagca gtggccggtc
     1201 cgaagttacg aacacctatc ggaccgtccg ccattttcag cctgggcaga ttgagtcgag
     1261 ggacatcgcg aatgaagaaa ccatccacgc cgccgagcaa atcgagtttc tcgtcgagcg
     1321 ttagctgagt aactattgtt tcaacgcgag cattcatttc ggcaggcgac ggagttcgca
     1381 cagacgatgt tgattgcgca aaagcaaagt ttgaaaccag tgtcaataag agaacgagtg
     1441 cagacaattt tcgcatattt gattaggtct cccgaccggt aggctggttc aattctattt
     1501 tct
//
LOCUS       DATCGC010001394         1399 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_54190, whole genome shotgun sequence.
ACCESSION   DATCGC010001394 DATCGC010000000
VERSION     DATCGC010001394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1399)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1399)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1399
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54190"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1213)
                     /locus_tag="VIJ87_13465"
     CDS             complement(<1..1213)
                     /locus_tag="VIJ87_13465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5445448.1"
                     /translation="MNSFPYTPQKASRENVVRIVISVLAIFICLIIITEAAQFGFSRL
                     LARYALVAKSIPAAAEAVSLTPSDADAHRALAVSFRNVQMFQEASKEFEIAASLRPND
                     DYVWLELGMLRDELNDSEGALSAFDQAVTQAPYYAHTRWQRANLRLRMGRYDEAFAEL
                     REAAKSNRTFLPSLIDLAWGLSRQDAKLTEQLAGIDSPDSRVAFTRFLASKGKGKETR
                     EQFAQAAQFFSVEQKRELLRALLEVHAYRDAFGIWKGSGELSNNDLQIHDGGFEGTIS
                     LSEVGFGWNISRQLSKVEASQDTSDKDSGDKSLRIAFDGDSPTAAVVVSQTIIVKPQT
                     RYRISFAVKAKDIISGGLPLLRVVDAGTNVMLAQSGSLPQNSEWQKQVIEFTSPSLCD
                     AIVLKLARNECT"
BASE COUNT          357 a          361 c          324 g          357 t
ORIGIN      
        1 atgtgcattc atttcgcgct agtttcaata cgatcgcatc acataaagaa ggcgaagtga
       61 actcaataac ttgtttttgc cattcgctgt tttgcggaag actccctgac tgggccagca
      121 ttacattagt acctgcatca acaactctaa gcagcggtaa cccgccactg atgatgtcct
      181 tggccttcac ggcaaagctt atcctataac gtgtttgcgg ttttacgatt atagtttgcg
      241 aaacgacaac tgcggcagtt ggtgagtccc catcaaaagc gatacgtaga ctcttatcgc
      301 cgctgtcttt atcagacgtg tcctgtgatg cttccacttt tgacagttgc cgggaaatgt
      361 tccaaccaaa tccaacttca ctgagactga tcgtgccttc gaagccgccg tcatgaatct
      421 gtaaatcgtt attgctgagc tcgcccgaac ctttccagat accgaatgca tcccgatagg
      481 cgtggacttc gagtagcgcc ctgagtagtt cacgcttttg ttcaaccgaa aagaattgcg
      541 cggcctgcgc aaactgctca cgagtttctt ttccctttcc tttgctagcg agaaatcgcg
      601 taaacgccac tcgtgagtcc ggtgagtcga tgccggcaag ttgttcagtc agttttgcgt
      661 cttgacgaga caagccccag gctaaatcaa tgagacttgg caagaatgtt cgattactct
      721 tagcagcttc tcgcagctca gcaaaggctt cgtcataacg acccattcgt aaacgtagat
      781 tcgcacgttg ccagcgcgtg tgggcatagt aaggcgcctg ggtcactgct tgatcgaaag
      841 cgctcagagc cccttcggag tcgttcaatt catctcgaag catacccaac tccaaccaaa
      901 cgtaatcatc gttgggacgc aagctggcag caatttcgaa ctctttggac gcttcctgaa
      961 acatctgaac gtttctgaaa cttacagcga gggcacgatg tgcatcagca tcgctcggcg
     1021 tcaaactcac ggcctccgca gccgctggaa ttgatttagc aacaagagcg tagcgagcca
     1081 acaatcgcga gaagccgaat tgggctgcct ctgtgatgat gattaggcaa atgaatattg
     1141 ccagaaccga aatcacgatt cgcacgacat tctcgcgact tgctttttga ggtgtgtagg
     1201 gaaacgagtt cattacagag ttcactacaa actaaaaacg tgccctttcg aataaaaggg
     1261 cacgttcgaa aaaattaatc tgagatggtt gtttaggttc cgctcggatt tccctggaag
     1321 acagtggtcg ttcctactac aacgccagtg cctgcagcga taatggccac cgttgctgga
     1381 attccaatac caaacaatc
//
LOCUS       DATCGC010001395         1078 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_486310, whole genome shotgun sequence.
ACCESSION   DATCGC010001395 DATCGC010000000
VERSION     DATCGC010001395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1078)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1078
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_486310"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(275..796)
                     /locus_tag="VIJ87_13470"
     CDS             complement(275..796)
                     /locus_tag="VIJ87_13470"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HEY5445449.1"
                     /translation="MKTLIAVSTCSFFLSSVIFASSLQEQNKAIAKRAFEELLSRGQF
                     ELAEQLYAKDFANHGIHRDIGLQEDQEALKGWHQAFPDIAIVPKKLIAEGDLVVIYWV
                     ARGTNTGTGNGLPATGKQVEQSGITIWRIVNGKIKEEWSAFDQLSMMKQLGLLNQKPS
                     GAGDTDATEKKKE"
BASE COUNT          257 a          285 c          257 g          279 t
ORIGIN      
        1 atcgggttgg tgggtgcgcc agccttgccg cagtcgttag ccgatcgcca gtaggcgatc
       61 aatcccgcca ggaatgcgag cagcaacaac actaacatcg cacctgtgat ccactttagt
      121 acacgcttta acaccttcat aactcatcct ttcactcaat cccacagatt cggttgatcg
      181 atcataattg aaactcactc gttaccatac tcgctcgctg ctacctcgca gctttacctt
      241 ctatgtcgct catcccgttc gctccattct ggtgtcattc cttcttcttc tctgttgcat
      301 cggtgtcacc tgcgccgctt ggtttttgat tcagaagtcc gagttgtttc atcattgaaa
      361 gttgatcaaa tgcagaccac tcctctttta tttttccatt cacgatccgc cagatcgtaa
      421 tcccggactg ttccacttgt tttccggtag ctggcaaccc gttacctgtg ccggtattgg
      481 tgccgcgggc aacccaatag atcacaacca ggtcgccttc agcgatcagc ttcttaggta
      541 cgatggcgat gtcgggaaat gcctgatgcc agcctttcag cgcctcctgg tcttcctgca
      601 acccgatatc gcgatggatg ccgtgattgg cgaagtcctt ggcataaagt tgctcggcaa
      661 gttcgaattg tccgcggctg aggagttcct cgaatgcgcg tttcgcgatc gctttgttct
      721 gttcctgcaa agaggaagca aaaatgacgc tgctaaggaa gaacgaacag gtgctaacag
      781 caatgagtgt tttcataaga gtgtaggaag gtttgatgat tgaatgtttc tatctggtgt
      841 gtggcgagaa tcgtaactat cagacggccg taatcccttg aacagaagcc aaaaactcac
      901 ggccagctcg aacagagcca ttggtgaatc gaagaggtag tcgttcacga ttttgttgaa
      961 gtgcggaaaa atgagaaaga taaaagcgca gagcacatac cacgcggagg agatcacgcc
     1021 gaacatcgac aatcccctcg gaatgtacgt cgacttgagc cacagccagg cgcaaact
//
LOCUS       DATCGC010001396         1019 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_54217, whole genome shotgun sequence.
ACCESSION   DATCGC010001396 DATCGC010000000
VERSION     DATCGC010001396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1019)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1019)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1019
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54217"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(105..374)
                     /locus_tag="VIJ87_13475"
     CDS             complement(105..374)
                     /locus_tag="VIJ87_13475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445450.1"
                     /translation="MSKRLRVEIKSRDEFWQKAVLIEWEYRHPDWKLTGDDTGFYLID
                     AEWLESLKAVATECNSTINVGPRNPGRRSMFQKLIPSFDSEATTR"
     gene            complement(380..>1019)
                     /locus_tag="VIJ87_13480"
     CDS             complement(380..>1019)
                     /locus_tag="VIJ87_13480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445451.1"
                     /translation="AQTKLHTLHTILRGRVLDGKFEARGKTYGVVFLPNQADIIDHKL
                     VLIGRMGFSVPQQATRYVDDVRATLMATQGGVGVSPVRRQLLAGTAQTAQTATSDQKL
                     EQEKGPETDLQPGLHSFEPPKYDDLGRPKVEATGSLGFVGVLYFKLLPLDSKSLGIPL
                     DMSDVQLGARLAPTDDLARDLQLLFSDVVAALENKSDETGPALDALNKALRV"
BASE COUNT          236 a          269 c          257 g          257 t
ORIGIN      
        1 ttcgctagta agaacggacg agccccgggt tacagtcggg ctagtgccct gggtttctga
       61 cttttgagac aaagccagga aaaggttgat gtgagctctt gaaatcatcg cgttgttgct
      121 tcgctatcga aagaggggat cagtttctga aacatggatc gtctgccggg attccttggg
      181 ccaacgttta tcgtcgagtt gcattcagtc gcaaccgctt taagagactc tagccactcg
      241 gcatcgatta aataaaaacc cgtgtcgtca ccggtaagtt tccagtcggg gtgtcgatac
      301 tcccactcga tgagtacggc tttctgccaa aactcatcac gtgacttgat ctctactcgt
      361 agtcttttac tcatcgttgt tagaccctca atgctttgtt caaggcgtcg agcgctggac
      421 ccgtttcgtc agatttgttt tcgagggctg cgacgacatc ggaaaacaat agctgtaagt
      481 cacgcgccag gtcatcagtt ggcgcgaggc gcgcaccaag ttgcacatcg ctcatgtcca
      541 aagggatgcc aagagactta ctgtcgagtg gcaacaactt gaaataaagc actccgacaa
      601 atccgagtga acctgtcgct tccactttcg gacgtcctaa gtcgtcgtat ttgggcggct
      661 caaacgaatg caaaccgggc tgcaagtcag tctctgggcc cttctcctgt tccaacttct
      721 gatcggacgt tgctgtttga gccgtctgag cagttcctgc cagcaattgc cggcggacgg
      781 gtgaaactcc aaccccaccc tgcgtcgcca tcaaagtggc gcggacgtcg tcgacatatc
      841 gagtcgcttg ttgcggaaca ctgaaaccca ttcgacctat cagaacaagc ttgtgatcaa
      901 tgatatctgc ttgattaggt agaaacacga cgccataagt tttcccgcga gcctcaaact
      961 tgccgtccaa cactcgacct cgcagaattg tatgtagcgt gtgaagcttc gtttgagcg
//
LOCUS       DATCGC010001397         1510 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_486347, whole genome shotgun sequence.
ACCESSION   DATCGC010001397 DATCGC010000000
VERSION     DATCGC010001397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1510)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1510)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1510
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_486347"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            566..>1510
                     /locus_tag="VIJ87_13485"
     CDS             566..>1510
                     /locus_tag="VIJ87_13485"
                     /inference="COORDINATES: protein motif:HMM:NF024566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445452.1"
                     /translation="MTPEFARQLGELSHEIRRQIGVLIDRKGHVQYVMVGDNRRIELP
                     DFKRVRVASGRFRGLRCVHTHLRGEQLTQDDLTDLALLRLDLMAAIDVDTTTGLPGVV
                     YAAHLLPLHAGELDNASTPDLYGFLEPRVPSQLDLDFLALIDSLEDEMARNRRSVRLA
                     EVRDRTILVGVATGPLSDAEESMAELAELAASAGVVVQDKIIQRRSAIDPRTVLGKGK
                     LDELIIRSLQLGADLLVFDSELSPAQVRSLSETTDLKIIDRSQLILDIFAQRAQSKEG
                     KIQVELAQLKYLLPRLIAGQDSAFSRLAGGIGGRGPGET"
BASE COUNT          378 a          396 c          377 g          359 t
ORIGIN      
        1 gctggtgtcg aagttctcgc actcaatagt gatctcgccg ccagcgatac cataaagagg
       61 ttcgattcga gtgattctgg tccttacctg tgacatcgca acttagtcgt tagtattacc
      121 tttccgcaaa atggttcatc ataacaattg cagaactagt agggatagcg tagcggcata
      181 actaccgcaa gcgtactcat tcaccatgaa ccgaataatc cctatgctat aatccgccgc
      241 agttaggtta gtgcgggact aattgttatt gcgatcctgg ccttgaaagc aggaagttgc
      301 gcacggtaaa gatctcgatg ccaaagcgac tcagcgactg gtcgtcgccg agcaaaacag
      361 ccagaccctt ccagcgtacg acgtacaccg cccgtagcag tcatcctgta attgctggcg
      421 atactctcaa tcccactaaa aacacagtaa gccaaggagg taacgaacta ttactagtgc
      481 gttaggtaat acactgggtc tcaaaccgaa tcaacttcgt cgtatagaga agctctacac
      541 gcgccggata cctcccaatc aaatcgtgac acctgagttt gctcgccaac tcggagaact
      601 gtcccacgaa attcgtcgtc aaattggtgt cctgatagat cgcaaaggtc acgttcagta
      661 tgtgatggtt ggtgataacc gcagaattga attaccggat ttcaaacgtg ttcgcgtcgc
      721 atcgggtcgt tttcggggac tccgttgtgt tcacactcat ctgcgagggg aacaactcac
      781 gcaggacgac ctgactgacc tcgcgttatt gcgtctagac ttaatggcgg cgatcgacgt
      841 cgacacaacg acgggattac ctggggtcgt ctacgcagct catcttctgc cgctacacgc
      901 cggcgaatta gacaatgcaa gcacaccaga cctttacggc ttccttgagc cacgcgttcc
      961 ttcccaactt gatctcgact ttctggcgct aattgattcc ctggaagatg aaatggccag
     1021 gaaccgtcga tccgtaagac tggcggaggt tcgggacaga acgattctcg taggcgtagc
     1081 aactggacca ctcagcgacg ccgaagaatc gatggccgaa cttgccgaat tagctgcttc
     1141 tgccggggtc gttgtgcaag acaaaataat tcagcggaga tctgcaatcg atccccggac
     1201 tgttctcggt aagggcaagc ttgacgaact tattattcgt tcgcttcaac tcggtgcaga
     1261 cctgctcgta ttcgatagcg aactgtcgcc cgcccaggtc aggtcgttat ccgaaactac
     1321 tgacttgaag attattgatc gttcgcagtt gatactcgat atcttcgccc agcgagccca
     1381 atcgaaagaa ggaaagatac aggttgaact ggcccagttg aagtacttgc tgcctcgttt
     1441 gattgccgga caagactcag cgttttcgcg acttgccggc ggaattggtg gacgcggacc
     1501 gggtgaaacc
//
LOCUS       DATCGC010001398         1632 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_152148, whole genome shotgun sequence.
ACCESSION   DATCGC010001398 DATCGC010000000
VERSION     DATCGC010001398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1632
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152148"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            534..>1632
                     /locus_tag="VIJ87_13490"
     CDS             534..>1632
                     /locus_tag="VIJ87_13490"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY5445453.1"
                     /translation="MRKLLGYTLLTVSFVVCFATAIFAQRTSGDIEGKVTDPNGAVVP
                     NVSITLTGVSVGFNRTVQSDDNGNFRIPQVPIGSYKLTTAPISGFAAATVDNITVTVE
                     KSTLVNVKLGITSVNSVEISADAMGVIDPTESKVQTNINAKLIEQLPKGTNFNSLLRL
                     SPATRAEGLAGGFQVDGASGSENSFLIDGLSVENFRTGVLNGVNNIPTELVSEIQIKT
                     GGFEAEHGGASGAVVSVVTRSGSDSFHGGAGVAFELSPLQPQPRNTLSRFVSSSSSAA
                     AIAANPDYLYMLKQKRDTYHNIFPSGTLGGPIVKSHLWFLTSYSPQMFTTTRTSNFIN
                     AIANSNFSTGQFVATPRLDATGSPLAPITYRQ"
BASE COUNT          408 a          420 c          383 g          421 t
ORIGIN      
        1 atcgacggcg cgtcggactg tgattgaaat gtgccgttga ctctcggcac cttactaacc
       61 attcgacgat ttttcggttc cgatcttctc cggttcttcg gcggcgagcg ccatcccgat
      121 cgtcagtgtg gagcgtagat actttcacgc ttgcctagag acctgacagc aacccggggc
      181 ggatcgtacc gaccctcaat tggagatcat tgaggacgtc gcaaacaccg ggaacgaagt
      241 ccaaaatttt gtacttctaa tcataatctc gtaggaaata tttcgatcgt ttgcgaaaca
      301 ggatcgctcc cacagttcta actcactgaa tataagaact tcttccaatt atcaatcttc
      361 tcaccctagc tggcatgtca gttgcgcttt aatgacttcg aattagtcat acggaagtag
      421 caccatcctt agcgcagctt accgcgcaac caaaacaaca ccaaggtctg catatttgca
      481 acgcctattc atttactcca acccgccggt tgtgcggcca aaggaaaaca taaatgagaa
      541 aactccttgg atatacccta ttaacagtgt ctttcgtcgt ttgcttcgcg acggctatct
      601 ttgcgcagcg caccagcgga gacatcgaag gcaaggttac tgaccctaat ggcgctgtcg
      661 ttcctaatgt cagcattacg ctgacaggtg tctcagtggg ttttaaccga actgtccaga
      721 gcgacgataa tggcaacttt cgcattccac aagtaccaat cggtagctac aaactcacaa
      781 ctgctcccat ttctggtttt gcggcagcta cggtggacaa catcaccgtg actgttgaga
      841 agagcactct tgttaacgtt aagttaggca taacgtcggt caattcagtc gaaatttcgg
      901 ctgatgcgat gggcgtgata gacccaactg aaagcaaggt tcaaacgaac attaacgcaa
      961 aactgatcga gcagttacct aaagggacca actttaattc gcttttgagg ctttcaccgg
     1021 caacccgtgc ggaaggtctt gcgggcggat ttcaggttga cggggcttcg ggttctgaga
     1081 attcgttcct tattgacgga ctttcggttg agaattttag aaccggcgtt ctcaatggcg
     1141 taaacaacat tcccaccgag cttgtttctg agattcagat caagaccgga ggtttcgaag
     1201 ctgagcacgg tggtgcttca ggcgctgtag tatccgtcgt taccaggtcc ggctcggaca
     1261 gttttcacgg aggtgctggt gtggcgtttg agcttagccc gttacagccc caaccgagaa
     1321 atacgttgtc acggtttgtt tcgagcagtt ccagcgccgc tgcgattgcc gccaaccctg
     1381 attatctgta catgcttaag caaaaaaggg acacgtatca caatattttc ccaagtggaa
     1441 ccttgggagg acccatcgtc aaaagtcatt tgtggttttt gaccagttac tcgccacaaa
     1501 tgtttaccac aacgcgaacg tcgaatttca ttaacgcgat cgccaattcc aatttctcga
     1561 ccggtcagtt tgtcgcaact ccgagactgg acgctactgg tagcccactg gccccgatta
     1621 catatcgaca aa
//
LOCUS       DATCGC010001399         2483 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_54295, whole genome shotgun sequence.
ACCESSION   DATCGC010001399 DATCGC010000000
VERSION     DATCGC010001399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2483)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2483)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2483
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54295"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(109..>2483)
                     /locus_tag="VIJ87_13495"
     CDS             complement(109..>2483)
                     /locus_tag="VIJ87_13495"
                     /inference="COORDINATES: protein motif:HMM:NF012602.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin dinucleotide binding
                     domain-containing protein"
                     /protein_id="HEY5445454.1"
                     /translation="FTERILAAWGIDGHNSHTNICSSGSREGYQLWMGLDRPSPDHSN
                     AKVILLISAHLESGHYFNPHAQRIIDGKANGAKLIVFDTRLSSTATHADYWVAPYPGS
                     EAAMLLAIANYLIQNNLYNREFVETWWNWKEYLSSESQVASFEFSDFEKKLKELYKEY
                     TFEFAAKESGVEAKVIEEIAKLVSTAGTQFSSHNWRSVASGVSGGWSVARCLFFVNAL
                     LGAIATEGGVYPNAWNKFVPRPIYTPPHPKMWNETTWPREYPLSMNEMSFLLPHFLKD
                     GRAKIDTYFTRVYNPVWTNPDGFSWIEMLTDPDLVGCYVALTPTWNETSYYADYVLPM
                     GVGSERHDLHSYETHDSQWLGFRQPVMKALKQREGQDIKDTRDVNPGEVWEENEFWLD
                     LTWRIDPDGTLGIRQYAESKKNPGERLGVDEYYEWIFNNSVPGLPEKAAEEDLTPLEF
                     MRRYGAFEIKNKIGKIYDETVGAEELEDLNVDRFGRVFTRAAKPAGPNIVPIPSPDGD
                     EVGRRLAGIKVGDTIKRGFPTPSGKLEFFSHTLKDWGWPEYAIPTYFKSHVHPDNLES
                     DQTILISTFRLAVQIHTRSANAKWLNEIAHTNPLWIHPSHAQKIDVETGDLVRVETEI
                     GYYVVPAWVTEGIKPGIVACSHHMGRWKLSEDGQRQFMATVKLDRDGTEWGLKRERGV
                     EPFESTDPDTLRIWWKDAGVHQNMTFPVHPDPISGMHCWHQAVRVRAADTDDKLGDIF
                     VDTEKSRAVYKKWLAMTRSADKYSPDRTRRPYWMLRPLKPAKEYYKLPEE"
BASE COUNT          561 a          671 c          630 g          621 t
ORIGIN      
        1 aattgtttga agtacatgtt ctaaatgtcc gataggcttt agcttgtcgt gagctctatc
       61 aagggtactc ttagctggat cacgacaagc taaagcctat cggacaactc actcctctgg
      121 cagtttgtag tattccttcg ctggcttcaa cggacgaagc atccagtagg gcctcctggt
      181 tcgatcaggc gaatacttgt ccgccgaacg cgtcattgcc aaccacttct tgtaaacagc
      241 gcgcgacttc tcggtatcaa caaaaatatc gccaagctta tcgtctgtgt cagctgcgcg
      301 cactcgaacc gcctggtgcc aacaatgcat ccccgaaatc ggatcgggat gtacggggaa
      361 cgtcatgttc tgatgaacgc ccgcgtcctt ccaccatatc cgcagcgtgt ccggatcagt
      421 tgactcgaac ggttccacgc cacgttcacg cttcaagccc cactcagttc cgtctctgtc
      481 gagcttcacg gtggccatga actgtctttg gccatcttcc gataacttcc agcgccccat
      541 gtgatgactg cacgcgacaa tgccgggctt aattccttct gtcacccagg ctggtacaac
      601 gtaataacca atttcagttt ctacgcggac caagtcgcct gtctcgacat cgatcttctg
      661 cgcatgactc gggtgaatcc acagagggtt ggtgtgtgcg atttcattta accatttggc
      721 gtttgcgctg cgcgtgtgaa tctgaaccgc aagacgaaat gttgagatca gaatagtttg
      781 gtctgattcg aggttatctg gatgaacgtg actcttgaag taagtcggta tcgcgtactc
      841 gggccaaccc cagtccttga gcgtgtgcga aaagaactcc aactttccgc ttggcgttgg
      901 aaagccgcgt ttgattgtgt ccccaacctt gatgccggcg agacgacgtc caacttcatc
      961 accatcgggt gacggtatcg gaacaatgtt tggtcccgca ggttttgcgg cacgcgtaaa
     1021 cactcgacca aatcgatcta cattgagatc ctccaactct tcagcgccaa cagtctcatc
     1081 gtagatcttt ccgatcttgt ttttgatttc aaacgcgcca taacgacgca tgaattccag
     1141 gggagttaga tcttcttccg cagctttttc aggaagaccg ggaaccgagt tgttgaagat
     1201 ccactcgtag tattcgtcga cacccaaacg ctcaccggga ttctttttcg attcagcgta
     1261 ctggcggata cccagagtcc catcgggatc gattcgccat gtcagatcga gccagaactc
     1321 gttttcctcc caaacttcgc cgggattaac atcgcgtgtg tctttgatgt cctgaccttc
     1381 gcgttgtttc aaagccttca ttacaggttg acgaaaaccg agccactgcg aatcgtgagt
     1441 ttcgtatgaa tgcaaatcgt gacgttccga accgacaccc atcggcagta catagtcagc
     1501 gtagtacgac gtctcattcc aggttggcgt cagtgcaacg tagcagccga caagatcagg
     1561 atcggtcaac atttcgatcc acgagaagcc gtcggggttt gtccaaaccg ggttgtagac
     1621 acgcgtgaag tacgtgtcga tctttgcgcg tccatctttt aagaaatgtg gcaagagaaa
     1681 cgacatttcg ttcattgaga gcgggtactc gcgcggccac gtcgtttcgt tccacatctt
     1741 cggatgtggc ggcgtgtaga tcgggcgagg cacaaacttg ttccaggcat tcgggtagac
     1801 gccaccttcc gtcgcaatcg cgccgagcaa ggcgttcacg aagaaaagac aacgagctac
     1861 tgaccagccg ccactgacgc ccgaagcaac gctacgccag ttgtgacttg agaactgtgt
     1921 gcctgcggta gaaacgagtt tggcgatctc ctcgatgacc tttgcttcga cgcctgactc
     1981 cttggccgca aactcaaacg tgtattcctt gtagagctcc ttgagcttct tctcgaaatc
     2041 cgaaaactcg aaactcgcaa cctgagactc ggaactcaag tactctttcc agttccacca
     2101 ggtctcaaca aactcccggt tgtagagatt gttctggatc aagtagttcg caattgcgag
     2161 cagcattgcc gcctcagatc cgggataagg cgcaacccag tagtcagcat gcgttgcagt
     2221 tgaggaaaga cgcgtgtcga aaacgatcag ttttgcgcca ttcgctttgc catcgattat
     2281 tcgctgggcg tgtgggttga agtaatggcc cgactccagg tgcgcgctga tcagcaggat
     2341 tacttttgcg ttggagtgat cggggctggg ccggtcgagt cccatccaga gttgatagcc
     2401 ttcgcgactg ccggaggagc agatgtttgt gtgtgagttg tgaccgtcga taccccacgc
     2461 agcgagaatg cgttcagtaa agc
//
LOCUS       DATCGC010001400         2059 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_252620, whole genome shotgun sequence.
ACCESSION   DATCGC010001400 DATCGC010000000
VERSION     DATCGC010001400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2059)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2059)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2059
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252620"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(23..382)
                     /locus_tag="VIJ87_13500"
     CDS             complement(23..382)
                     /locus_tag="VIJ87_13500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445455.1"
                     /translation="MPIVKKRNEQTETRLLLESGEPVELPPAEIDDKAVLVQFEKFKP
                     FVPELLDSLRAGTIAEPVPVMLDGSTFAVHGPTRTFWVKLWHAAGSDMTRIDRAQIIS
                     CLPSTRGVQIVVESPED"
     gene            complement(488..1921)
                     /locus_tag="VIJ87_13505"
     CDS             complement(488..1921)
                     /locus_tag="VIJ87_13505"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009252629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase"
                     /protein_id="HEY5445456.1"
                     /translation="MPAPNIDTIVSLAKRRGFVFPSSEVYGGLGSAWDYGPLGVELCN
                     NVKQSWWRWLVYERDDIEGVDSSIILNRTVWKYSGHEATFHDPLVDCRECKTRLRADK
                     LELPSDTAEGADVVKLIKEKLVKCPNCGSTDLTEPRPFNMMLRTTLGAASADDDPTAL
                     AYLRPETAQGIFINFLNVQTTMRRKLPFGIAQVGKSFRNEITPGNFILRTREFEQMEM
                     EYFVKPDAEHFKLVDEWVEQYMEWFVGLGLRKENLSLHEVPPNELAHYSKRTVDIMYR
                     YFPERPDEERQWEELMGIAYRTDFDLRSHSNKPADEEGKRVNPDSTEDLSYFDEAIKQ
                     RFYPHVIEPAAGVNRTVLAVLMDAYSERTNEKGETRVILKLSPQLAPIKAAILPLAKN
                     KPEIVGMAKAVKRSLQPVLRAVYDDTGGIGKLYARQDEIGTPFCVTVDHQSLEDEAVT
                     VRDRDTWEQERVKVSDLAEHLQKKLKP"
BASE COUNT          518 a          556 c          471 g          514 t
ORIGIN      
        1 cacagactga aatctctgcc acttaatctt ccggggattc gacgacgatt tgaacgccgc
       61 gcgttgaagg gaggcaacta atgatttgag cacgatcaat cctggtcata tcgcttcccg
      121 ctgcatgcca tagcttgacc cagaatgtac gtgtcggacc gtgaacggcg aaggtcgaac
      181 catcgagcat tacgggaacg ggttcagcga tcgtcccagc tcgaagtgaa tctaacaatt
      241 caggaacaaa aggcttgaac ttctcaaact ggaccaaaac agctttgtca tcaatctcgg
      301 ccggcggcag ttcaactggc tcgcccgact cgagcaacaa acgcgtctcg gtctgctcat
      361 ttcgtttctt tactatcggc atctcagaaa gtttcgagtc tcaggcttcg agttccaggc
      421 tccgaatctc gagttggacc taaactgctt caacttgaaa ctcgaaactt ggaacccaaa
      481 acttttctta gggttttagt ttcttctgta aatgctcggc gagatctgaa actttgacgc
      541 gctcctgttc ccacgtgtct cggtctcgca ccgtcaccgc ttcatcttcc agtgattgat
      601 gatccacagt tacacaaaac ggcgttccga tctcatcctg ccgcgcatac agcttaccga
      661 taccaccagt atcgtcataa acggcgcgca ataccggttg taaagatcgc ttgaccgctt
      721 ttgccatacc aacgatctcc ggcttgttct tagccagcgg cagaatcgca gccttgattg
      781 gagcaagctg cggactgagt tttagaatca ctctggtctc gcccttttcg tttgtcctct
      841 ctgaataagc atccatcaag acggcaagca ctgttcgatt cacacctgcc gcaggttcaa
      901 tcacatgtgg gtagaaccgt tgctttattg cttcatcgaa gtaagacaaa tcctctgtcg
      961 agtcaggatt aacacgctta ccttcctcat cagcgggttt gttcgaatgt gatcgcaaat
     1021 caaagtcagt tcgataggca atccccatta attcttccca ctggcgctcc tcgtcaggcc
     1081 gttccgggaa gtagcgatac atgatgtcga ctgtccgttt tgagtaatga gctagttcat
     1141 ttggcgggac ctcatggagc gacaagtttt ccttgcgaag ccccaggcca acgaaccact
     1201 ccatgtattg ttcaacccac tcatctacaa gcttgaaatg ttcagcatct ggtttgacga
     1261 aatactccat ctccatctgc tcaaactcgc gagtgcgaag aataaaattg ccaggcgtta
     1321 tctcgttgcg aaatgacttt ccaacctggg caataccaaa cggcagcttg cgtcgcatcg
     1381 tagtttgcac gttcagaaaa ttgatgaaga tcccttgcgc cgtttcgggc cgcaaatagg
     1441 cgagcgctgt tggatcgtca tcggcagatg ccgcaccaag agtagtgcgc aacatcatgt
     1501 tgaatggacg tggttcagtt agatccgttg agccgcagtt tggacacttg accagttttt
     1561 ctttgattag tttcacaacg tcagcacctt cggcagtgtc tgagggcaac tcaagtttgt
     1621 ccgcacgcag tcgtgttttg cactcacggc aatcgaccag cggatcatga aaagtcgctt
     1681 cgtgccctga atacttccaa acagttcgat tcagaatgat cgacgaatca accccctcaa
     1741 tgtcatcgcg ctcataaacc aaccaacgcc accacgactg cttcacgttg ttacagagct
     1801 ctacacccag cggaccgtaa tcccaggcgc tgccgaggcc gccataaact tcggaggaag
     1861 ggaagacaaa gccgcgacgc tttgcaagtg aaacgatagt gtcgatgttg ggtgcaggca
     1921 cgtgtttagc tagtgatcct ttgcaattag taagtcgtga atagtagaag accagtcaat
     1981 aaaagaaaag aagagagaac caaaccaacg gttctctccc cgcacttcgc ccaataagca
     2041 gatcaactac ttgctcgga
//
LOCUS       DATCGC010001401         1289 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_286017, whole genome shotgun sequence.
ACCESSION   DATCGC010001401 DATCGC010000000
VERSION     DATCGC010001401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1289)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1289)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1289
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_286017"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1288
                     /locus_tag="VIJ87_13510"
     CDS             <1..1288
                     /locus_tag="VIJ87_13510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445457.1"
                     /translation="LPQTQNKVDDRNNFGPRFGFAYDMSGDGKTSIRGGWGIYYGRVI
                     NSTVYNSLVNTGVGVDRAQRQVSVAASNAIAPVYPQLISSGALTVPAVQYFSPKFQLP
                     QIHQLDFVFEREIARNTVVSASYLGSFGNSLPNFVDTNLSAPTQWGTWTAVGGPNNGQ
                     TWRMPLFLGARPNSSFAQLTEIRSDVFSKYNALVLQANRRLTEGLQFQTNYTLSRAYD
                     NGQSSVTFTSNNLPFNAFDQQNENGLSNFDRRHKFVASLVYNTNFKTDNTAAKHILNG
                     WTIAPILNAFSGQRITAAISGSVSPANNFGINLATQAGGLNGSLGSSRFALLPRSFYK
                     QPQIWYADMRVSRRFSITEKTKVEFLVEGFNIFNRTLVTGVNSTIYSVDTSGSLASPR
                     PFLNFNSGVNGFQSVTGADSTLFRERQVQMAARFEF"
BASE COUNT          305 a          338 c          320 g          326 t
ORIGIN      
        1 cttgccacaa acgcagaaca aagttgacga tcgaaacaac tttggaccac gcttcggttt
       61 tgcctatgac atgagtggtg atggcaaaac cagtattcgc ggtggttggg gaatctatta
      121 tggtcgcgtt atcaactcga ccgtctataa ctcactcgtg aatacaggtg tcggcgtcga
      181 tcgtgctcag cgccaggtca gcgtcgctgc ctctaacgca atcgcgcctg tttatccgca
      241 gctcatttcg agtggtgctt taacggtccc cgccgtccag tatttctcgc cgaaattcca
      301 gttgccacag attcaccagt tggactttgt gtttgagcgc gaaattgctc gaaacacggt
      361 ggtatcggcg tcctatcttg gaagctttgg caactcgttg cctaacttcg tcgatacaaa
      421 cttgagtgca ccaactcaat ggggtacatg gactgcggtg ggtggaccaa ataacggtca
      481 aacatggaga atgccgctgt tcctgggtgc gagaccaaat tcttcgtttg cgcagcttac
      541 ggaaattcgc agcgatgtct tctccaagta caacgcactc gtccttcagg ccaatcgacg
      601 tttgaccgag gggttgcagt tccagaccaa ttacacattg tcgagagctt atgacaacgg
      661 tcaaagctca gtgacgttca cctccaacaa cctgccattc aatgctttcg atcagcaaaa
      721 tgaaaacggc ttgtcgaact ttgatcgccg gcacaagttc gttgccagcc ttgtctacaa
      781 tacaaacttc aagactgaca acacggcagc gaagcacatc ctgaatggat ggacgatcgc
      841 tccaatcttg aatgctttca gcggtcagcg aattaccgca gctatttcgg gctcagtgag
      901 tccagcgaat aacttcggta tcaacttggc aactcaagcc ggtggcttga atggttcgtt
      961 gggatcttct cgatttgctc tcttgccgcg tagcttctac aagcagccac agatttggta
     1021 tgcggacatg agggtttcac gacgctttag cattaccgaa aaaaccaagg tcgagtttct
     1081 ggttgaaggc ttcaacatct tcaatcgcac gctcgtgact ggtgttaact ccaccatcta
     1141 ctccgtcgat acaagcggtt ccctggccag tccacggccg ttcctgaact ttaatagcgg
     1201 agtgaatggg ttccagagtg tgaccggtgc tgacagcaca ctcttccgtg agcgacaggt
     1261 gcagatggcc gcgcgcttcg agttctaag
//
LOCUS       DATCGC010001402         1019 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_23301, whole genome shotgun sequence.
ACCESSION   DATCGC010001402 DATCGC010000000
VERSION     DATCGC010001402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1019)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1019)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1019
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23301"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(514..>1019)
                     /locus_tag="VIJ87_13515"
     CDS             complement(514..>1019)
                     /locus_tag="VIJ87_13515"
                     /inference="COORDINATES: protein motif:HMM:NF015686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445458.1"
                     /translation="KRFFTRVNGKRAGTLLLLVLVVVEVTDLVFAVDSIPAIFAITTN
                     TFIVYTSNVFAILGLRSMYFLLAGVIEKFHYLRVGLAIVLTFIGVKMLIVAAGIHIPI
                     WVSLIFVAVVLLGSVGASLFFAKESEATIHVDLPADFDLPLSEESTDLSDAVDSTDEN
                     KASTESR"
BASE COUNT          285 a          244 c          280 g          210 t
ORIGIN      
        1 ctggattatt aagtttggca acgtttttga gtggattgcc gtacttccag acgtacaccg
       61 ccgcgcccgc ggcaagaccg cacagcatta gcagggcgat tatcagatac acaaagcgct
      121 tctgaataat ccaccaatca aaagcaaagt gactggtctt attcgccatt gttaaatcga
      181 cttgctcaga ggggtcaaca atttgggatg ctcgtgtgcg gactcttgaa tccgcacgtc
      241 caagggtgtg gagggtccga accgagtcgg aggtgataat tcagtgcggc agtcagcaaa
      301 ctacctgatt tgaaaaataa cacacaggcg ggaatcggtt caagcacgtt taattgaaga
      361 aatcgaggat taacgcagtg ggtcggggag agtggaagaa gggagactgg gaaacggggt
      421 catggggagt acgggagacg gggtgatagc gtgacgcagg gacagggagc tagtcgcaga
      481 tctaccgcgt ctccggtcgc ccccatctgt ctttcacctc gattccgtgc tggccttgtt
      541 ctcgtccgta ctgtctactg catcggatag gtcggttgac tcttcgctga ggggaagatc
      601 aaagtctgct ggaagatcta catgaatggt ggcttcactt tccttcgcaa aaaaaagcga
      661 ggcccccacc gaacccagca ggactacagc aacaaagatc aaagaaaccc aaattggaat
      721 gtggataccg gctgcgacga tcagcatctt cacaccgata aaagtgagga caatcgccag
      781 ccctacccgc aaatagtgaa acttctcaat aacaccggcg agcagaaagt acattgaacg
      841 caagccaagg atcgcgaaaa cgtttgaggt gtagacaatg aacgtgttgg tcgtaatggc
      901 gaagatcgcg ggaattgagt caacagcaaa aacgagatca gtaacttcga cgactaccag
      961 cacgagcagg agcaacgtgc cggctcgctt cccgttcacc cgtgtaaaga accgtttct
//
LOCUS       DATCGC010001403         1267 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_352941, whole genome shotgun sequence.
ACCESSION   DATCGC010001403 DATCGC010000000
VERSION     DATCGC010001403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1267)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1267)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1267
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_352941"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..539)
                     /locus_tag="VIJ87_13520"
     CDS             complement(<1..539)
                     /locus_tag="VIJ87_13520"
                     /inference="COORDINATES: protein motif:HMM:NF012339.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HEY5445459.1"
                     /translation="MNASITFEPSGISGLVAQGTYLIDAARRMGAPVGASCTAGKGEC
                     PNCVISIKSGADQLSMPTNMEGKVLGEGGLADSLRLACQTKIEGHGDIVLMVTTHRSQ
                     NAGPSVDLSSEIAKKFGELSLNQKIVALLKFEAITMSEAWDTALQKPLAIGSRAFDSI
                     VSRARAAQANAKANAKSKE"
     gene            complement(623..1114)
                     /locus_tag="VIJ87_13525"
     CDS             complement(623..1114)
                     /locus_tag="VIJ87_13525"
                     /inference="COORDINATES: protein motif:HMM:NF013629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HEY5445460.1"
                     /translation="MTEEQEVFLKHIQKKGLKRTAQRDLILDVFLRTEAHLSNEDLYR
                     LVKQEDPTVGQTTVYRTLKLLTEAGLAREVRFGDNRTHYEHHYKHQHHDHMICSECGK
                     IIEFYSAELEALQDAMAAKHKFEVTQHLLRIIGVCAECRRAQKQNSSHEAVVSPTLRR
                     VAR"
BASE COUNT          289 a          307 c          325 g          346 t
ORIGIN      
        1 tactctttcg atttggcatt cgctttggca tttgcctggg cggcgcgcgc acgtgaaacg
       61 attgagtcaa aagctcgact tccgatagca agcggctttt gtaatgctgt gtcccacgct
      121 tcagacattg tgattgcttc aaacttgagc aacgctacaa tcttttgatt aagactcagc
      181 tcaccaaatt tcttcgcgat ttcagacgat agatccacag acgggccggc gttttggctt
      241 cgatgagtcg taaccatcaa aacgatgtcg ccgtgtcctt caatttttgt ttgacaggcc
      301 aggcgaaggg aatcagccaa gcccccttca cctaatactt tcccttccat gttagttggc
      361 atcgacaact gatcggcgcc tgacttgatc gatatcacgc agtttggaca ttcacctttg
      421 cccgctgtac agctcgcccc tacgggtgcg cccattcgtc tcgctgcgtc gatcaaataa
      481 gttccttgcg cgactaaacc agagatccct gagggttcaa atgtgattga agcgttcata
      541 ttattcacca cgcatgtctg acgttattta gtttgaaatt acacccgaag ccacacgaag
      601 gcaaaaggcg aggggaaacg ctttatcgag cgacgcgacg gagggtcggg gagacgacgg
      661 cttcgtgact ggaattctgt ttctgggctc gtctgcattc agcgcaaacg ccgatgatgc
      721 gcagcaggtg ttgggtcact tcaaacttgt gtttcgctgc catcgcatcc tggagtgctt
      781 cgagttcagc agaatagaac tcaattattt ttccgcactc ggagcagatc atgtgatcgt
      841 ggtgttgatg tttgtaatgg tgctcgtagt gagtgcggtt atcgccaaag cgaacttctc
      901 gagcgagacc cgcttcggtt aggagtttca acgttcgata cacagtcgtc tgaccaacgg
      961 tggggtcctc ctgcttcacc agtcggtaga gatcttcgtt cgagagatgt gcttctgttc
     1021 tcagaaatac atcgaggata aggtctcgtt gcgccgtacg tttcaggccc tttttctgaa
     1081 tgtgtttaag aaatacttcc tgctcttcag tcattgttga tgatattagc actgcgtaat
     1141 ggatgagtga agatgcaggc gcttcggtac gagcgagaca tcgcgttttc taacatatct
     1201 cgactagggt cggaaggagg aagcgctagc aacttataag gaactgcaaa gggtcgctcc
     1261 tgagaag
//
LOCUS       DATCGC010001404         1800 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_119262, whole genome shotgun sequence.
ACCESSION   DATCGC010001404 DATCGC010000000
VERSION     DATCGC010001404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1800)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1800)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1800
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119262"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1800
                     /locus_tag="VIJ87_13530"
     CDS             <1..>1800
                     /locus_tag="VIJ87_13530"
                     /inference="COORDINATES: protein motif:HMM:NF037016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="choice-of-anchor Q domain-containing protein"
                     /protein_id="HEY5445461.1"
                     /translation="VSRSLAPGTPQFRIFTIQNITTTVLVRGLTITNGLAASGGAIFN
                     EGDCTLTLEACDLNNNVATDDGGAIFNRGALTVRDSLISGNSVNNFVGGALINRGTAP
                     SATLINTTITGNQAVQGGGGIWDGLNSKLTLLNCTITNNTALVEGSTSGVRTFNSPSG
                     QNAKIRNTIIAGNVGTTNPDTGGFFVSQGHNLIGKSDGSNGFTNGVNGDFVGTDSSPL
                     NARLAELSSNGGSTRTHALLAGSPALDAGDNCVFNFTCVPTYSFALTTDQRGALFSRS
                     VDGPDADTTATVDIGAFEAQVSIPDFADQTINEDASLSLPFNVGGAASITSISATSNN
                     TTLVPNSASNISISGTGSTRTLLINPVANLSGLATITVTVNGSNSQTMSDTFVLTVNS
                     INDAPSFTKGADQTVNEDSGAQTVSTWATSISAGPANEAGQTLTFQVTGNSNSTLFAV
                     QPAISSSGTLTYTPAANQAGSANITIVLKDNGGTALGGSDTSGSQSFTITVNAVNDAP
                     SFIKGADKTVNEDSGAQSISNWATLISAGPNETGQTLTFEVTANSNPGLFATQPAISS
                     TGTLTYTPQANQSGSANITIVLKDNGGTSLGGSD"
BASE COUNT          473 a          469 c          429 g          429 t
ORIGIN      
        1 gtttctcgaa gtttggctcc gggaactccg cagttccgca tcttcacgat acaaaacata
       61 actactactg tgctggtccg aggcctaact attactaatg ggcttgccgc gagtggtgga
      121 gcaatattta atgaaggaga ttgcacttta acgctcgaag cctgcgatct aaacaataac
      181 gtcgccactg acgatggtgg agcgattttc aaccgtgggg cactgactgt tcgagatagt
      241 ctaataagtg gcaattctgt aaataacttc gtcggaggtg cactaataaa tcgaggtact
      301 gcgccttccg caactctcat caataccaca ataaccggca accaggcagt tcagggtggt
      361 ggtgggatat gggatggcct caattcaaaa cttacgttgc tgaactgcac aattacgaac
      421 aatacagccc ttgtcgaagg gtctacgagc ggtgttagaa ccttcaactc gccgagcgga
      481 caaaacgcta agatccgaaa cacaattatt gctggtaacg ttgggacgac aaatccggat
      541 acaggcggat tcttcgtttc tcaggggcat aacttgattg gtaaatctga cggcagcaat
      601 ggcttcacta acggcgttaa tggagacttc gttggtacag atagttcgcc gctcaacgcg
      661 cgtcttgctg agctaagtag taatggtgga tcgacaagga ctcatgccct cctcgctggg
      721 agtcccgcac tcgatgccgg cgataactgt gtcttcaatt tcacttgtgt accgacttat
      781 agtttcgcat taaccaccga tcaacgaggt gcgcttttca gccgcagcgt cgacgggcca
      841 gacgcagaca caactgccac tgttgatatc ggagcctttg aagcacaagt ttcgatacct
      901 gatttcgccg atcagacgat caacgaggac gcttcactgt cgcttccatt caatgttggt
      961 ggagcggctt ccatcacaag catctcagcg acctccaaca acacgacgtt agttccgaac
     1021 agtgcttcta atatttcgat ctcgggaact ggctcaacgc gcacgcttct cattaaccct
     1081 gttgcgaatc tctccggcct tgcaacgatc acggtcaccg ttaatggcag taacagtcaa
     1141 acgatgtcag acacattcgt cctaacggta aactctatta acgacgcgcc gtcttttacg
     1201 aaaggggctg accaaacggt taatgaagac agtggagcac agacggtctc cacgtgggcg
     1261 acatcaattt ccgccggccc agcgaatgaa gctggccaga ctttgacttt ccaggtaaca
     1321 ggaaattcca attcaactct gttcgcagtt caacctgcga ttagttcgag cggaacgttg
     1381 acctatacgc ctgcagccaa tcaagctggt tctgcaaaca ttacaatcgt tttgaaagac
     1441 aacggcggta cagcactagg cggatcagac acttcgggct cgcagtcgtt cacgatcacc
     1501 gttaacgccg ttaatgacgc accctcattt atcaaaggcg cggataaaac cgtcaatgaa
     1561 gacagtgggg cacagtcgat ctctaactgg gcgacgttaa tttccgccgg accaaatgag
     1621 actggccaga ctctcacttt tgaggttaca gctaattcaa atccaggctt gttcgcgacc
     1681 caacctgcga ttagttcgac tgggacactg acctatacac cgcaagccaa tcagtctggt
     1741 tctgcaaaca ttacaatcgt tctgaaagac aacggcggta cttcacttgg tggatcagac
//
LOCUS       DATCGC010001405         2792 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_418459, whole genome shotgun sequence.
ACCESSION   DATCGC010001405 DATCGC010000000
VERSION     DATCGC010001405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2792
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_418459"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(256..945)
                     /locus_tag="VIJ87_13535"
     CDS             complement(256..945)
                     /locus_tag="VIJ87_13535"
                     /EC_number="5.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047689 - aspartate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid racemase"
                     /protein_id="HEY5445462.1"
                     /translation="MTQHIGIVAGSAEGAALCYRTICLEAPAVMGEHNHPEITMNSVP
                     LAAHMRHVRANDWEALAGILAASAHKVAQAGANFAICPDNTYHQSFKYLIPQSPIPWI
                     HIAGAVADEAQRSGYRRLGILGTKYLTESSVYPEALAEYKIEREIPEEADREKINQII
                     FKELVNGIFLETSRLYFNEVAEELKGRGCDAVVLGCTEIPLIVNPEDTPLPTLDSTRL
                     LARAALKKALE"
     gene            1363..1581
                     /locus_tag="VIJ87_13540"
     CDS             1363..1581
                     /locus_tag="VIJ87_13540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445463.1"
                     /translation="MEQTRLNIARVTSNLADLMSTTNPRQTPIQTPGESTETAIYNSN
                     NDHSQATPIPQISLRNEVRPNCPQNESA"
     gene            1675..>2792
                     /locus_tag="VIJ87_13545"
     CDS             1675..>2792
                     /locus_tag="VIJ87_13545"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEY5445464.1"
                     /translation="MNAELQDKSDGFFGRRPRWIRWGFFFCVWTLLGLSFAVSTYLGA
                     LQNGAQISWKRALSGYLADFYLWGMLSPLIFLVARRFELRHHFPRNLLIHISLSILLS
                     GLVLSAASPLVWYLGYVNLTLNPTLFTLWRNNAFSIYYFHQGLTVYWTTVVVAHSLYY
                     YRRVREEEARTGQLATQLAQAQLQALKMQIHPHFLFNTLNSIAALLHKDVEAADKMIA
                     RLGDFLRLTLTRSDEQTLDFDQELGFLKCYLDIEHIRFQDRLTVEMDIDPETLNVIVP
                     NLILQPIVENAVRHGISKRASSGHITIRARQQNNRLILQVEDNGPGLKSNSNGSHSGI
                     GLSNTRARLEQFYGDDFSFEIANNDGRGVTVTLDVPAKR"
BASE COUNT          660 a          732 c          670 g          730 t
ORIGIN      
        1 ctcttagagc attaggaagt ttgctgtccg attcggccca tgcttgcagg ttccgagtat
       61 caacaaatgc gaactcctcc ccacgatcca accgctgctt tacttcgtcg actgtgattc
      121 tggttacgtc cataaatcct cctcgctagt accaagcgaa acgcgtgccc agaagattgt
      181 gggctatttc ggagtactta gactgagatt gtgtcctgaa tcgtaacgtt cgtaaggatg
      241 gaatcatact acgtctcact ccaacgcctt cttcaacgct gctcttgcaa gcagacgcgt
      301 tgaatccagg gtcggtagag gagtgtcttc gggatttacg atcaatggaa tctcggtaca
      361 accgaggacc actgcatcac aacctcgtcc cttgagctct tccgctactt cattgaagta
      421 cagccgggac gtttcgagaa agatcccgtt cactaactcc ttgaagatga tttggttgat
      481 cttttcccga tcagcctctt cgggtatctc gcgctcgatt ttgtattccg ccaatgcctc
      541 cggatagaca ctgctttccg tcagatactt cgtccctaaa ataccgagcc gccggtaccc
      601 ggaacgctga gcttcatcag caactgctcc tgcgatgtga atccacggaa tgggagactg
      661 cggtatcagg tacttgaacg actggtggta cgtattatcc ggacagatag cgaagttggc
      721 gccggcctgc gcgactttgt gcgcagacgc tgcaagaatt ccggccagcg cttcccaatc
      781 atttgcgcga acgtgtcgca tatgtgcagc gagcggtacg gagttcattg tgatctccgg
      841 gtgattgtgt tctcccatta ccgccggcgc ctccaaacaa attgtgcggt aacacaaggc
      901 agcgccctcg gcactgccag ccactattcc aatgtgttgg gtcatacttt taattacctt
      961 gctagaaaga tttctatcaa cggattaccc tagtctaact attagatcag cagcgcaaaa
     1021 gaaccgtcca ctgtgttagc cccgatttcg aaaataattg cacgaacagt cgggaatccc
     1081 acgtacggca gtgcggggat tgttcaagcc cagcctacca aagcaagctc ccaaacttct
     1141 gcgcctcgcg cggagttcgt ttcaaggctt cgaatcattc tccgcgcgaa gcgtaagtgt
     1201 tttgttggct agtattaggt tggacttgaa ctatccgcca actgccgctg gtggaattca
     1261 ccctcagcct gacctgctac gtcacgcaag attggcgctc gtcactaatt gattcaaatc
     1321 tctagaacgc tcattcagac tgagtcacga aggcaggact gaatggagca aacaagactt
     1381 aacatcgcta gagtcacttc caaccttgca gatctcatga gtacgaccaa tccacgacag
     1441 accccaatac aaactcctgg cgaatcaacc gaaactgcaa tctacaactc gaacaacgat
     1501 cattcgcagg ctactccgat tccacagatt tcgttgcgaa acgaggtaag gcctaactgt
     1561 cctcagaacg aatctgcgta atccgtctac ggatcccttt ttgcagtcgc aatcaagatg
     1621 gcatatcttt caggttctga tgcgatgttg ggttgatggc tggtttctga tctgatgaac
     1681 gcagagctgc aagataagtc tgacggtttt ttcggccggc gtccgcgctg gatacggtgg
     1741 ggtttctttt tttgcgtgtg gaccttgttg gggttgtcgt ttgccgttag cacttatctg
     1801 ggagctcttc agaacggcgc tcaaatatcg tggaagagag cactctcggg ctacctggcc
     1861 gacttctatt tgtggggcat gctgtctcca ctcatcttcc tggtcgccag acgatttgaa
     1921 cttcgtcatc acttcccaag aaatctgctc attcacattt ctttgagcat cctactctcg
     1981 gggttggtgt tgtctgcggc atcgccttta gtgtggtatc tcggctacgt gaatctaact
     2041 ctcaatccta ctttgttcac tctctggcgt aacaatgcgt tcagcattta ctactttcac
     2101 cagggcttaa ccgtttattg gacgactgtc gtcgtcgctc attcacttta ttactaccgt
     2161 cgtgtccgtg aagaagaagc gcggaccggg caactggcaa cgcaattggc ccaggcgcaa
     2221 ctgcaggcgc tgaagatgca gattcatccg cactttcttt tcaacactct caattcaatt
     2281 gcggcactct tgcacaaaga tgtcgaagcg gccgataaaa tgatagccag acttggcgac
     2341 ttccttagac ttactctgac aaggtccgac gagcaaaccc tggatttcga tcaggagttg
     2401 gggtttctaa agtgttacct cgacattgaa cacattcgtt ttcaggatcg actaacggtt
     2461 gagatggaca tcgatccgga aacgctgaat gtcatcgtac ccaatcttat tctgcagccg
     2521 attgtggaaa atgcagtacg acacgggatt tccaaacgtg cctcttcagg acacataacg
     2581 atccgggcgc gtcagcagaa caaccggtta atcttgcaag tcgaggacaa tggaccagga
     2641 ttgaaatcga actcaaatgg tagtcattcc ggcattggtc taagtaatac gcgggcgcgg
     2701 ttggagcagt tttatggcga cgactttagt tttgagattg caaacaacga cgggcgcgga
     2761 gtaactgtaa ctctagatgt gcccgctaag cg
//
LOCUS       DATCGC010001406         1105 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_152211, whole genome shotgun sequence.
ACCESSION   DATCGC010001406 DATCGC010000000
VERSION     DATCGC010001406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1105)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1105)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1105
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152211"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(156..941)
                     /locus_tag="VIJ87_13550"
     CDS             complement(156..941)
                     /locus_tag="VIJ87_13550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015351969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY5445465.1"
                     /translation="MTQSVFVEGVLNGHVAFVTGGGTGITGGVARALAEAGASVALIS
                     RKVEHLEPAAAAINANGGKAFAFAADVREPEAVEKAVAATIEQFGKIDVVVNGAAGNF
                     LCKAEELSPNGFGTVVDIDLKGTFNVCRATFEQLKQTHGQVLNISATLHYLGTPMQLH
                     VSAAKAGVDALTRNLAVEWGRYGIRVNGIAPGPIEDTEGMKRLVPEPIKERLKKNIPL
                     GRFGRIADIETAAVFLCSEAASFINGVTIVVDGGQWLAGNRVL"
BASE COUNT          254 a          326 c          246 g          279 t
ORIGIN      
        1 catgtcattt cgtcttgtct ttgtttcttt gacaaagttt tgtagaggaa caaataccgc
       61 ctcattcagt ttctctgtgt cctctgcgtc tctgtgttct ctgcgttagc ttatgcccgg
      121 cctctatgaa acgcagaggg cacagagaag agccctcata gaactctatt cccagccaac
      181 cactgcccac catctacaac aatcgttacg ccgttgataa aactcgctgc ctcggaacaa
      241 agaaacactg ccgcggtctc aatatctgca atcctcccaa agcgacccaa gggaatgttt
      301 ttcttcaatc gctctttgat gggttccggt acaagtcgct tcattccttc agtgtcttcg
      361 attggcccag gcgcgatacc gttcactcga atgccatagc gaccccattc aactgcaagg
      421 ttacgcgtga gcgcgtcaac tcccgctttt gcagctgaca catgcaactg catcggcgtt
      481 cccaggtagt gcaacgtcgc actgatgtta agcacttgac cgtgcgtctg tttcagctgt
      541 tcgaaggttg cgcgacatac gttgaacgta ccttttagat ctatatcgac tacagtccca
      601 aaaccattgg gagacagttc ttcagctttg caaagaaagt ttccggcagc accgtttacg
      661 acgacgtcga tcttcccaaa ctgctcgatc gtcgcagcca cagctttctc aaccgcttca
      721 ggctctcgaa catctgctgc aaacgcgaag gctttgccgc cattggcatt gattgctgcg
      781 gcagctggtt caagatgttc aactttgcga ctaatgagcg caactgatgc acctgcttca
      841 gccagcgcgc gcgcgacccc gcccgtgatg ccggtgccgc caccggtcac aaaagcaacg
      901 tgtccattca aaacgccttc aacaaacact gattgagtca tggctgaatt ttacgacgcg
      961 acttgcagcg cctcctccaa tgtgaatcgt cgttcgtaaa gtgctcggcc aacgataaca
     1021 ctatcgacga gcggttcact tgctgcgcga aggcgttcaa tatcttcaag gcttgagacg
     1081 ccacctgacg cggtcacctg aacat
//
LOCUS       DATCGC010001407         1301 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_353051, whole genome shotgun sequence.
ACCESSION   DATCGC010001407 DATCGC010000000
VERSION     DATCGC010001407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1301)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1301)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1301
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_353051"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(142..>1301)
                     /locus_tag="VIJ87_13555"
     CDS             complement(142..>1301)
                     /locus_tag="VIJ87_13555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445466.1"
                     /translation="SFDSAYSQLLSWCRERDFAGHDPFDALNSRIFQSSPFARSRNAR
                     FIWTQLVKRSPSDLRSLIRVPVQRNSKGIALFSLAMIANHRRMKSAASEMQARSLLDD
                     LISMQLDGYCGAAWGYNFDWQSRNFFAPRGTATIVPTAFAARALVEGARAFQVEEYLA
                     LARSCCDFILKDLPRPVSTDDQICFSYSPYSDTKIFNASLLAGEVLAEVGVMTGEEQL
                     IDYAERAARYVVKHQRDDGSWTYGTDPKQDWVDNFHTAFVLFSLKRIIDACSLRAQFQ
                     PALERGYQYWKKSFFLADGWPKYYDDDPYPADAHAGASAIVTFLELGDLDPESTKLAE
                     SVARWTIANLRAKQGFFYYQKRKFYIVKKPYMRWSQAWMLYGLARLLEEGN"
BASE COUNT          343 a          345 c          325 g          288 t
ORIGIN      
        1 tttctcagca caaatcccag ccgcagatga acgcggaaaa acacagatca gatcaaaaca
       61 aactgagccg gaacgcccaa acattcttat ttctgtctgc gttcaaccta cctaagtcaa
      121 caagctgaag catatcggac attagttccc ctcttctaac agccgggcca acccgtataa
      181 catccacgcc tgactccagc gcatatacgg cttcttcacg atgtaaaact ttcgtttctg
      241 gtaatagaag aacccttgct tggcgcgcag gttcgcgatc gtccaacgag cgacactctc
      301 cgccagcttt gtcgattccg gatcaagatc gccgagctca aggaaagtaa caatcgcgct
      361 cgctccggca tgtgcatccg cgggataagg gtcgtcatcg tagtatttag gccaaccatc
      421 cgcaagaaag aagcttttct tccagtattg atacccgcgc tcgagggctg gctgaaattg
      481 ggcccgcaat gaacacgcat cgattatccg cttaagtgag aagagaacaa atgccgtgtg
      541 gaaattgtcc acccaatctt gttttggatc tgttccataa gtccacgaac catcgtcacg
      601 ttgatgcttg acgacgtagc gggctgctct ttctgcgtaa tcgattaatt gttcctcacc
      661 tgtcatcact ccaacctcgg ccaacacttc accagccagc aagctggcgt tgaaaatctt
      721 agtgtcactg tatggtgaat aactaaaaca gatctggtca tcggttgaga ctggtcgagg
      781 cagatccttg aggatgaagt cgcaacaact gcgcgccagc gcaagatact cctcaacctg
      841 gaatgcgcgg gccccttcaa ccagtgcgcg tgccgcaaac gcagttggaa caatagtggc
      901 agtgccacga ggagcaaaga agttccgact ttgccaatcg aagttatagc cccaggctgc
      961 gccgcagtag ccgtcaagtt gcatcgagat cagatcatca agaagacttc tcgcctgcat
     1021 ttcagacgcc gcacttttca ttcgacggtg attcgcaatc atcgcaagtg agaacagcgc
     1081 tatgcctttg gaatttcttt gtacagggac gcggatcaga gaacgaagat cggagggaga
     1141 gcgctttacg agttgcgtcc aaatgaagcg agcgtttcgc gatcttgcga agggactcga
     1201 ctgaaagatc cgactgttca gggcgtcaaa gggatcgtgt ccggcaaagt cgcgttcacg
     1261 gcaccaggag aggagttggg agtaggcaga gtcgaaagag a
//
LOCUS       DATCGC010001408         1038 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_252664, whole genome shotgun sequence.
ACCESSION   DATCGC010001408 DATCGC010000000
VERSION     DATCGC010001408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1038
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252664"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..905)
                     /locus_tag="VIJ87_13560"
     CDS             complement(<1..905)
                     /locus_tag="VIJ87_13560"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEY5445467.1"
                     /translation="MSGNVKLSPSAPLVNVQRRPGSWLSVVLERFGFVTTLDLTVVLT
                     LGLLIVLGLGLRLNQLGAIGFAEDEMNKLDAVHSYERGDFTANGEHPMLMKVLMFASL
                     HAATNASEEAALRFPNALIGALTVIPLFLLTASFFDRWTALLAAAFWAFGINAITHNR
                     IGKEDSLLVFFMLFAFYFFLHAKQTPPREELVRKKNYIASAVSFGLMIASKYFPHYLG
                     LNMLFHHHFHAYKPKPGEPGGKTPGLFFMLIIAVFLIASPAVLMPQVWDYMNAYMGER
                     LLSHSGYLFAGQLYKNNMSSSPFWGT"
BASE COUNT          282 a          260 c          281 g          215 t
ORIGIN      
        1 gtgccccaga atggcgaact cgacatgttg tttttataca actggccggc gaagagataa
       61 ccggagtgag acaacaatcg ttcacccatg taggcattca tgtaatccca aacctggggc
      121 atcaacaccg ccggactggc gatcagaaag acggcaatta tcaacatgaa gaaaaggcct
      181 ggtgtctttc caccgggttc gccgggcttt ggtttgtaag cgtggaagtg atgatgaaag
      241 agcatgttga gcccaaggta gtgagggaaa tacttggaag cgatcattag tccaaacgaa
      301 accgcgctcg ctatgtaatt cttctttctc actaactctt cgcgcggagg cgtctgcttg
      361 gcatggagaa agaaatagaa cgcgaagagc ataaagaaaa cgagcagcga gtcttctttg
      421 ccgattcgat tatgcgtgat ggcgttgatg ccgaatgccc aaaacgcggc agcgagaagc
      481 gcggtccacc tatcgaagaa gctcgcagtc aacaagaata gcgggattac ggtcagggcg
      541 cctatgagag cgttgggaaa acgcaacgcc gcctcctcgc tcgcgttagt tgccgcgtga
      601 agtgaggcga acatcaacac tttcataagc atcgggtgct cgccgtttgc ggtgaagtcg
      661 ccacgctcgt aagagtgaac ggcatccagc ttattcatct cgtcctcagc aaaaccaata
      721 gcgccgagtt gattgagacg taacccaagt ccgagcacga tcaggagtcc gagggtgagc
      781 acaaccgtaa ggtcgagtgt agttacgaaa ccgaaccgct caagaaccac actcaaccag
      841 gaacccggac gacgctgaac gtttaccagc ggggcagaag gcgaaagctt tacgttcccg
      901 gacaaaatct aacctcacag aaaggctttt agcgttgaac gctatgctgc aagtgtcccg
      961 gattatttac gtcgaggtag gagagttagt caatcgggat attccctcgc cgttcgcctc
     1021 gttgtcctgc ctcaacaa
//
LOCUS       DATCGC010001409         1266 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_187980, whole genome shotgun sequence.
ACCESSION   DATCGC010001409 DATCGC010000000
VERSION     DATCGC010001409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1266)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1266)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1266
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187980"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1244
                     /locus_tag="VIJ87_13565"
     CDS             <1..1244
                     /locus_tag="VIJ87_13565"
                     /inference="COORDINATES: protein motif:HMM:NF014879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445468.1"
                     /translation="FLSEYFAQHAAEIMSGNGFRVAMFSEAAPTPVISWAVKNLGAAG
                     GIVITASHNPATFNGFKIKAPWGGSADPETTAKVEKLVDVNAPRQTEILSVESSLLNG
                     AIATYREQIANYVDLERIRAAAGTVIVDPMHGSGGTWVEGFLQGGTLNVETIRALRDP
                     LFGGVNPEPIDQNLGPLKQRVIETDAMVGLATDGDADRVGAVDELGQTMTMHDVVPLM
                     LFHLARQRKMSGAVVVTVSQSVLTKRIAAAMGLKLYETAIGFKYIADLMLKDDILIGA
                     EESGGIGVKGHIPERDGILNSLLFLEAIVSAGKPPSQMLADLHREFGEFRFGRRDLHM
                     PVSRGQALVAKLSEQPPSKIGEYEVLDVVTLDGAKVLFADESWLLFRQSGTEPVLRIY
                     SEATSFEKRDALLDAGLAIAQ"
BASE COUNT          307 a          295 c          382 g          282 t
ORIGIN      
        1 gctttctctc cgaatacttc gcgcaacatg cagccgagat aatgagcggc aatggttttc
       61 gtgtcgcgat gttctcggaa gccgcaccaa cacctgttat ctcctgggcg gtgaagaatc
      121 tgggcgcagc aggcgggatc gtcatcacgg cgtcgcacaa tcctgcaacg ttcaacggat
      181 tcaaaatcaa agctccgtgg ggtggaagtg ccgacccgga aacaactgca aaggttgaga
      241 agctggtgga tgtaaacgca ccacgacaga ccgaaatatt gagcgtcgaa agttcgttac
      301 taaacggagc gattgcaacc taccgcgaac agatcgccaa ctatgtagat ctcgaacgta
      361 tccgcgcagc agccggcacg gtcatcgtcg atccgatgca cggctcgggt ggcacctggg
      421 ttgaagggtt tttgcagggt ggaacgctga acgttgagac catcagggca cttcgagatc
      481 ctttgtttgg cggcgtaaac ccggaaccga ttgaccagaa tctggggcca ctcaaacaac
      541 gcgtaattga gactgatgca atggttggtc ttgcgactga cggcgatgcc gatcgggttg
      601 gggcagtcga cgagcttgga caaacaatga cgatgcacga tgttgtgcct ctgatgctgt
      661 ttcaccttgc gcgtcaaagg aagatgagtg gtgcggttgt agtcaccgtc tcccagtctg
      721 tgctgacaaa acgaattgcc gcagcgatgg gtctgaagct ttatgagacg gcgatcggat
      781 tcaaatacat cgccgacttg atgttgaagg acgacatttt gattggcgcc gaagagtcgg
      841 gaggcatcgg cgtaaaaggc cacataccgg agcgtgacgg cattcttaat tcactgctct
      901 tcctagaagc gatcgtaagt gctggcaaac cgccgtcgca gatgttggct gatctacacc
      961 gagagtttgg cgagtttcgc tttggacgtc gcgatctgca catgccggtg agtcgaggcc
     1021 aggcattggt tgcgaagttg tcggagcagc caccttcgaa aatcggagag tatgaagttc
     1081 tagacgtagt gacactcgat ggtgcaaagg tgttgtttgc agacgagtcg tggttgttgt
     1141 ttagacaatc tggaacagaa ccggtgttga ggatctattc agaagcgaca tcgtttgaga
     1201 aacgcgatgc attgctggat gcgggtctcg caatcgcgca gtgagaaaaa ggatctaggc
     1261 agaggc
//
LOCUS       DATCGC010001410         1335 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_486511, whole genome shotgun sequence.
ACCESSION   DATCGC010001410 DATCGC010000000
VERSION     DATCGC010001410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1335)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1335)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1335
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_486511"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1335
                     /locus_tag="VIJ87_13570"
     CDS             <1..>1335
                     /locus_tag="VIJ87_13570"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRTAC1 family protein"
                     /protein_id="HEY5445469.1"
                     /translation="KNDQGKFTDVTSQSGDLAKQANGVGTGAVAGDFDNDGKPDLFIL
                     RYRASALYHNDGNGKFSDVTAKAKLPNYTYLSRSVAFVDYDHDGDLDLFIAGDSDPAE
                     VLKTPANARKTSELPPAANLVLRNNGDGTFVDDTATAKLGGPNHARAVVATDFDNRRD
                     IDLLVSSDKGVSLWRNMRDGTFNDVAGDVGLKSDAIPRWASVAVGDVNKDGYTDFYFA
                     RGEAAGYFELSDGRSHFIQQRGPGDLTIQPADPKAKYNNASQFIDYDNDGFLDLITVV
                     TASSGDALPHTELRIWRNAGDSWVDVSDKAKEITGKIGPDGQALSGQRILASADLDGD
                     GDTDIIFGTPGGGLRIARNEGGNRNHSVRVKVAGLVSNRSGVGAKVELRAGSLQQKLE
                     TYSASPAPAPADVEFGLGTRETADALRVIWPSGVVQAETEFSKTPGVANLLTL"
BASE COUNT          327 a          335 c          378 g          295 t
ORIGIN      
        1 aaaaacgatc agggaaagtt cactgacgta acctctcaat caggtgactt agcaaaacag
       61 gcgaatggtg tcggcacagg tgcagtcgct ggtgattttg acaacgacgg caagccagat
      121 ctttttatcc ttcgctatcg agcaagtgcg ctctatcaca atgatgggaa tgggaagttt
      181 agtgatgtaa cggcgaaagc aaagctgccc aactacacat acctgtcgag atcagttgct
      241 tttgttgatt acgatcacga tggggacctc gaccttttca tcgccggcga ttcagatccc
      301 gctgaggttt tgaagactcc tgcgaatgcc cgaaagacga gcgaactgcc accagccgcg
      361 aacctcgtct tacgaaacaa cggcgacgga acgtttgtcg acgacaccgc caccgcaaag
      421 ttaggtggac ctaaccacgc gcgagctgtt gttgctacag attttgacaa tcgacgcgat
      481 atcgatctgc ttgtgagctc cgacaaaggt gtgagtctct ggcgcaacat gcgcgacggg
      541 acgttcaatg atgtcgctgg cgacgtcgga ttgaaaagtg acgcgatacc gagatgggcg
      601 agcgttgccg tcggcgatgt taacaaggat ggctacacag atttttactt cgcacgcggg
      661 gaggcggctg gctatttcga actgagtgat gggcgcagtc attttattca acaacgcggc
      721 ccaggtgatc tgaccattca gccagccgat ccgaaagcta aatacaacaa cgcctcacaa
      781 tttatcgact acgacaacga cgggttcctt gatctgatca ctgtagtgac cgcaagttcc
      841 ggtgatgctc ttccgcatac tgagctacgc atttggcgta atgctggtga cagttgggtt
      901 gacgtgagcg ataaggcaaa agagattacc gggaagattg gtccagacgg acaggcttta
      961 tctgggcagc gcatactcgc ctcggcggat ttggatggcg atggcgacac tgacatcatt
     1021 tttggaacgc ccggtggcgg attacgaata gcgcgcaatg aaggtgggaa tcgcaaccat
     1081 tccgttcggg tcaaagtcgc gggcctcgtc agcaaccgaa gcggcgtcgg cgcaaaagtt
     1141 gaactgcgcg cgggaagcct gcaacagaag cttgaaactt attcagcctc cccagcacca
     1201 gctccggccg acgtggagtt tggtttgggc actcgcgaaa ctgctgatgc gctgcgggtc
     1261 atttggcctt cgggagttgt ccaggctgaa acagagttta gtaagactcc tggtgtcgca
     1321 aacctcttaa ccctg
//
LOCUS       DATCGC010001411         1748 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_454320, whole genome shotgun sequence.
ACCESSION   DATCGC010001411 DATCGC010000000
VERSION     DATCGC010001411.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_454320"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..455)
                     /locus_tag="VIJ87_13575"
     CDS             complement(<1..455)
                     /locus_tag="VIJ87_13575"
                     /inference="COORDINATES: protein motif:HMM:NF018446.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022841 - potassium ion leak channel
                     activity [Evidence IEA];
                     GO_process: GO:0071805 - potassium ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TMEM175 family protein"
                     /protein_id="HEY5445470.1"
                     /translation="MIREKRIEKKIGKHTSFRLRSEEISRIEGLSDAVFGFAITLLVV
                     SLEVPKTFNELATAMSGFGAFAISFALLFLVWYNQHKFFRRYGLQDTVTIVLNAILLF
                     VVLFYVYPLKFLFTFLVSRFTGGHGEVRLPNGNIESMLENDGQMGTLML"
     gene            complement(495..1187)
                     /locus_tag="VIJ87_13580"
     CDS             complement(495..1187)
                     /locus_tag="VIJ87_13580"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEY5445471.1"
                     /translation="MRTRVANMLQLVDKEKPGVCKAAMCLWQSAGSVVLSRQAKAYRT
                     FALVLFVTVGLTACNGNDTTSNANAPVISNPPHTSLPMPPLNGKSITNMGWSLADGKH
                     SAFSDFNGKILVLDFYATWCEPCRRSIPHLIGLQRRYENDVRVIGLNVGGPDDAAEVP
                     GFAQEFKIQYQLGVPDDDLASLLLANSDAIPQTFIFDREGKLMRNFVGFGESTGEEID
                     RTVERALLSKAD"
     gene            complement(1177..1368)
                     /locus_tag="VIJ87_13585"
     CDS             complement(1177..1368)
                     /locus_tag="VIJ87_13585"
                     /inference="COORDINATES: protein motif:HMM:NF015821.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HEY5445472.1"
                     /translation="MKCPTCGKSIEWKDNSFRPFCSERCQLVDLGRWVEGDYRVPGEP
                     LPEDQAERLPATQDMEYEN"
     gene            complement(1398..>1748)
                     /locus_tag="VIJ87_13590"
     CDS             complement(1398..>1748)
                     /locus_tag="VIJ87_13590"
                     /inference="COORDINATES: protein motif:HMM:NF024934.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEY5445473.1"
                     /translation="QVGDFKRGMAEDDRLHDYTFRLIGQRLDHAERRLADFALNAIPA
                     RLDRLLAEFSDRYGVSEAAGVLIDIPLPHREIASIVGSTRESVTVRLNAMRREGTIEF
                     VNRRILIKRPASLV"
BASE COUNT          445 a          453 c          435 g          415 t
ORIGIN      
        1 atcaacatca atgttcccat ttgaccgtcg ttctcaagca ttgattcgat gttgccgttt
       61 ggcaagcgaa cctcaccatg tcctccagtg aatctgctca ccagaaatgt aaaaagaaac
      121 ttcagtggat agacatagaa caggactaca aatagcagga tggcgttaag aactattgtg
      181 accgtgtcct ggagtccgta acgtctgaag aatttgtgct ggttgtacca aacgaggaag
      241 agcagggcaa agctgattgc gaacgcgcca aagccgctca ttgccgtcgc tagttcgtta
      301 aaagtcttgg gaacttccag tgatacgacg agcagagtga ttgcgaaacc gaacaccgcg
      361 tcgctgaggc cctcgatacg ggagatctcc tcgctgcgca agcgaaacga agtgtgcttt
      421 cctattttct tttcgatccg cttttctcga atcattacac tgggctcccg ggggaagtga
      481 gcacctctac tagttcagtc agctttagaa agtaaggcgc gctcaacggt gcgatctatt
      541 tcttctcccg tgctttcacc aaaaccgacg aagtttcgca tcaatttccc ctcgcgatcg
      601 aagataaacg tctgcgggat cgcatcgctg ttagccagaa gcaagctagc gagatcgtcg
      661 tcggggaccc caagttgata ttgaatctta aactcttgcg caaagcctgg gacttctgcc
      721 gcgtcatctg ggccaccaac gtttaaacct atcactctga cgtcgttttc gtaacgtcgt
      781 tggagtccaa tcaaatgagg aatgctcctg cgacacggtt cgcaccaggt tgcataaaag
      841 tcgagcacca ggatctttcc attgaagtca gaaaaagcag agtgctttcc atcagcgagg
      901 ctccatccca tgttggttat cgacttccca ttcaacggtg gcattgggag agaagtgtgg
      961 ggtggattgg aaatcacggg agcattagcg ttactcgtcg tgtcgttacc gttgcaagcc
     1021 gttaggccaa cagtaacgaa gagcacaaga gcgaatgtcc gatatgcttt agcttgtcgt
     1081 gacaaaacaa cagaacccgc ggattgccac aagcacattg cagctttgca aacgcctggt
     1141 ttttctttat cgaccagctg aagcatattg gccactctag ttctcatatt ccatatcctg
     1201 agttgccggt agtctttccg cctggtcttc aggcagcggt tcaccaggca ctcggtagtc
     1261 accttcaacc caacggccca gatcgacgag ctgacaacgc tcggagcaaa agggacgaaa
     1321 ggagttgtct ttccactcga ttgatttacc gcaggtagga catttcatga atctagaagg
     1381 ttaccaagct tgagtcttca caccaaagac gcaggccttt tgatcagaat tcgtcgattg
     1441 acgaattcga tcgtaccttc acgacgcata gcgttcaagc ggacagttac actctcgcgg
     1501 gttgagccga caatcgacgc aatttctcga tgaggaagcg ggatatcgat tagcacaccc
     1561 gcagcttcag aaacaccgta tcgatcggag aactcagcga gcaacctgtc gaggcgggcg
     1621 ggaatcgcat tgagtgcgaa gtcggcgaga cgccgctccg catggtcgag tcgttgaccg
     1681 atcaatcgga aagtgtaatc atgaagccgg tcatcctcag ccatcccccg tttgaaatcc
     1741 ccgacctg
//
LOCUS       DATCGC010001412         1125 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_454327, whole genome shotgun sequence.
ACCESSION   DATCGC010001412 DATCGC010000000
VERSION     DATCGC010001412.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1125
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_454327"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(91..585)
                     /gene="coaD"
                     /locus_tag="VIJ87_13595"
     CDS             complement(91..585)
                     /gene="coaD"
                     /locus_tag="VIJ87_13595"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR01510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004595 - pantetheine-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HEY5445474.1"
                     /translation="MRRAIYPGSFDPITNGHLDIIERGCKLFDEIIIGILVNPEKQPF
                     FTIEERHEMLNEVLKEISRGGCNVRVDSFRGLLVNYAVAQQADAIVRGIRAISDYEYE
                     LQMALMNRRLEPSIETVFMMPAETYSYVSSRLVKEIFQLGGAIDGLVPPVIERRMKEK
                     MNKG"
     regulatory      772..846
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00521"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="SAM riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00521"
BASE COUNT          297 a          263 c          270 g          295 t
ORIGIN      
        1 cccatgggtt ctttgaactt ttacctgttc aaaaaaaatc tattgcatgg aatgtcggga
       61 gtataccacg cgacttaata agcaattgcg ttacccttta ttcatttttt ctttcattcg
      121 tctctcgatt accgggggca cgagaccgtc gattgcgcct ccaagttgga agatttcttt
      181 taccaaacga gagcttacat aagagtaagt ttcggctggc atcatgaaca cagtctcaat
      241 gctgggctcc agacgtcggt tcatgagcgc catttgaagc tcgtactcgt aatcggaaat
      301 agcccgtatg ccacgaacga tggcgtcagc ctgctgcgcc acggcgtaat ttacaagcag
      361 gccacgaaaa gaatcgacgc gaacattaca accgcctcga ctgatttcct ttaatacctc
      421 gttgagcatt tcatgccgct cttcgatggt gaaaaacggc tgcttttcag ggttcacaag
      481 gatgccgatg attatttcat cgaaaagctt acagccgcgt tcgatgatat ccaggtgacc
      541 gttggtgatg gggtcgaacg aaccggggta gatggcacgt cgcatgggat tgaatggtaa
      601 aggctaaaca gtgaatggta aataggaatc ctgcaaattg gacttgggtc ttgggccctt
      661 tgccctcgag aagatcaaac tcacgcccaa aggccgaagg cccaagtcca aagaccaatc
      721 tgcaatctgc aatggcttga cactccctaa cctcaatggt tcaatacgat ttgacagtga
      781 cgtggtgagt taaggcgact tgcggccacg taaaataatc gctaaacagc tcggcgagtc
      841 taattcgcag caaggtttta gaggctccgc gttgtctagc gcggggcctt tagttatttc
      901 agattgaaga tcgtagattc caagtcgtga gcgaccgttt gacaatctgc aagcggaaat
      961 ctgaaatcta caattatctg actccttatg tcgaacttct tagaaacact taaagaacgc
     1021 atcgtcgtat ttgacggcgc aatgggaacc aaccttcagg tccagaacct gacgcttgat
     1081 gactttggcg gtcttcgctt tgaaggttgt aatgaaaatc tcttg
//
LOCUS       DATCGC010001413         1422 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_418560, whole genome shotgun sequence.
ACCESSION   DATCGC010001413 DATCGC010000000
VERSION     DATCGC010001413.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1422)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1422)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1422
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_418560"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(168..1220)
                     /locus_tag="VIJ87_13600"
     CDS             complement(168..1220)
                     /locus_tag="VIJ87_13600"
                     /EC_number="1.11.1.5"
                     /inference="COORDINATES: protein motif:HMM:NF015131.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c peroxidase"
                     /protein_id="HEY5445475.1"
                     /translation="MSRTKLLGFLAVILLVIAAALIAGCNKNATETAAGFTPEILPLP
                     EPLKSYEPMSIPQDNPMTPEKVALGRQLFFDERLSVDGTRSCYSCHVCEHGLTDGLPK
                     AIGAGNKQLTRSSPTLWNIGYHKEFYWDGRSASLEKQALAAWTGGNMGAKAEDIVVKL
                     NALQEYKAQFQKVFQSDATPDNVVKAIAAFERTIISGSTAWDRWKAGDNTAINQSAFR
                     GWNIFQAIKCNNCHDGVLFTDQQYHNVGIGMDAKEPDPGRFKVTNKPEDTGAFKTPTL
                     RDIANTAPYFHDGSAKTLEEAMDIMLAGGKPNEHLDKKNLEVHKILPEQREDLLAFFK
                     SLSVDCTLKKPALPQK"
BASE COUNT          328 a          355 c          366 g          373 t
ORIGIN      
        1 cactggacgg aagtcgagaa gagattgaaa acaccggctg gccaaaccgc gcgtgcgtga
       61 ttacaaagcg gatgtccgac gaactttagt ttgtcgatgt gtgagctaaa gagagcttgg
      121 aggtcggcaa cgacaaacta aagttcgtcg gacatcttta ccccttccta cttctgcggt
      181 agggctggct tcttcagggt gcagtcaact gacaacgact taaagaaagc taacagatcc
      241 tcacgctgct ccggcagaat cttgtgcact tcgagattct tcttgtcgag atgctcgttt
      301 ggttttccgc ccgccaacat gatgtccatt gcttcttcga gagtcttcgc actgccgtcg
      361 tggaagtacg gagccgtgtt agcgatgtct cttagtgtcg gtgtcttgaa tgctcccgtg
      421 tcttcaggct tattcgtaac cttgaaacga ccggggtcag gctctttcgc gtccatacca
      481 atgccgacgt tgtgatactg ctggtcggta aatagaacgc cgtcgtggca gttgttgcac
      541 ttgatcgctt gaaagatatt ccaaccacgg aatgcacttt gattaatcgc ggtgttgtcc
      601 ccagccttcc aacgatccca tgcggtgctg ccgctgatga ttgtccgttc gaaagccgca
      661 atcgctttca caacgttgtc cggggtcgcg tcgctttgaa agactttctg aaattgcgct
      721 ttatattctt gtagcgcatt cagctttacg acaatgtctt cagccttggc acccatattt
      781 ccgccggtcc aggcagctaa cgcttgcttc tcgagtgaag cactgcgacc gtcccaataa
      841 aactctttgt ggtaaccaat gttccagagt gtcgggctac tccgggttag ttgcttgttt
      901 ccggcgccga tcgcctttgg caaaccgtct gtcaaaccgt gctcacagac atggcaggaa
      961 tagcaagacc tcgtaccatc aacactcaag cgctcgtcga aaaacagctg acggcccaac
     1021 gccaccttct caggagtcat tggattatct tgcgggatgg acatcggttc gtaactcttc
     1081 aacggttctg gcaagggtag gatttcagga gtgaagccgg cagcagtttc agttgcgttc
     1141 ttgttgcagc ctgcaatcag ggcagcggcg ataacgagaa gaatgacagc gagaaatccg
     1201 agaagttttg tcctactcat gaataaaact cgcgaagaaa aacgatcgct cctccgttct
     1261 gtggtttcgg tcgccgcgga ttcttacact ggcccaacga aatgtctaga gtttgtttgt
     1321 ggcacgactt cagtctgtgt actgggaatc agaaaacggg ggacgaagaa aaaaccattg
     1381 gtcgtatcat ttgagatttg tcagttggtc aattgatgaa ga
//
LOCUS       DATCGC010001414         1009 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_54430, whole genome shotgun sequence.
ACCESSION   DATCGC010001414 DATCGC010000000
VERSION     DATCGC010001414.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1009
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54430"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            302..661
                     /locus_tag="VIJ87_13605"
     CDS             302..661
                     /locus_tag="VIJ87_13605"
                     /inference="COORDINATES: protein motif:HMM:NF025683.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4383 domain-containing protein"
                     /protein_id="HEY5445476.1"
                     /translation="MAKTVCKILGVVFLLVGVAGFANQGLLGAHLSPPHNVVHIVSGV
                     IALYFGFAGSLTGARAFALVFGVLYLGLGACGLALGAPGERMWTIGPLHLGQVDHIIH
                     TLLGVIFIGAGMFTKRN"
     gene            complement(757..>1009)
                     /locus_tag="VIJ87_13610"
     CDS             complement(757..>1009)
                     /locus_tag="VIJ87_13610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445477.1"
                     /translation="ADVNHTGSYLAPVFENNFPFRMAELTFDGYTKADFFASYEYRMS
                     EQVTMTLFGGVENSFNQKYYENGFLAPGALGRGGVKFKF"
BASE COUNT          227 a          243 c          252 g          287 t
ORIGIN      
        1 gattgtttcc caagtcataa gtggtcagtg gtcggttgga gtgctcgcct aagatggggc
       61 aagttgcctg cctcaactaa gttgaactgg cgggagtata acactcgcca gaaagcccaa
      121 tccaaacggc caacgaggtg gttttattcc ccggatttct ttgcaacggc aaaggctctc
      181 tgatatacat gcgccgcgtt aatcgagcct cgaggttgga acatttcgcg ggcttccaat
      241 ttagttggtt ggggaccgca cagttctttc aaacctttca cagaggagat agacactaat
      301 catggcaaag accgtttgca agattttggg agtcgttttc ttattagtgg gagttgcggg
      361 ttttgcaaat cagggattgt tgggagcaca cctgtcgccg ccacataacg tggttcacat
      421 cgtttcgggc gtcatcgctc tctattttgg ttttgctgga tcgttgacgg gagccagggc
      481 tttcgccttg gtttttggcg ttctctattt gggtcttgga gcttgtggat tggccttggg
      541 cgctcccggt gaacgcatgt ggacaatcgg tccgctgcat ttaggtcaag ttgatcacat
      601 tattcatact ttgctgggtg tgatctttat tggcgccggg atgttcacaa agcgtaatta
      661 gaaatcgctt tcaggttgca aggtcgagtt cgataagttg acgcacatgc gcccacgaat
      721 tctccaacct tgcaacctga ttctttcact tcatctctag aacttgaact taacccctcc
      781 tcggcccaac gctccgggtg ccagaaaacc attctcgtag tacttctggt tgaaggaatt
      841 ttcaactcca ccaaacagcg tcatcgttac ctgttcagac attctgtatt catagctggc
      901 aaagaagtct gccttcgtgt aaccatcgaa cgtcaactcc gccattcgaa acggaaagtt
      961 attctcaaac actggagcca gataggaccc agtgtgattc acatcggca
//
LOCUS       DATCGC010001415         1492 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_119390, whole genome shotgun sequence.
ACCESSION   DATCGC010001415 DATCGC010000000
VERSION     DATCGC010001415.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1492)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1492)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1492
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119390"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            56..1066
                     /locus_tag="VIJ87_13615"
     CDS             56..1066
                     /locus_tag="VIJ87_13615"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HEY5445478.1"
                     /translation="MMNLKRTRRLAVLLLGLVAATTLTGCASTPNSGEVGVVRNGKAW
                     YNPFDWLDNHKIRGIVPNGNGNTWVGMGSSVHYYPVNTQQRFFTLQSCVSDGELTPCK
                     GADSTAITVPTADGVEVTLSGQFLFNTAFDGTARGDSLVKDFDTQYSTRKFGSKHPYE
                     GTEGWSNWLAAIVEPTIVNNMRQVVSGLSCAELVSSCALVQNGGQQASQKAADLANGK
                     VNQNNVQRVQDAVVKSLQADLKGNLGNDYFQNIRFNLTTVRLPNQVQDSIDKAQSAFA
                     QVSQSQARVQQAKADAAANEERQKGYEKCPACAQIDTLKAIPSNVTTFAPGAGFSITS
                     GK"
     gene            1069..1419
                     /locus_tag="VIJ87_13620"
     CDS             1069..1419
                     /locus_tag="VIJ87_13620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445479.1"
                     /translation="MGRVAEAIILLGLVGGGGWLFWAGLRKSYNGVREVLNKKADWGI
                     ATVEDDDRTAIWLVKGWGKSVHLDAPKGFRYAHLIGTVDRDRDDYTERMIDLQVEAES
                     KRDDWNNIQRALKS"
BASE COUNT          347 a          373 c          439 g          333 t
ORIGIN      
        1 taaagccgtg cgagtttggc ttgacaactc gcccgatcag ttgtaagctc cctgcatgat
       61 gaatctcaag cggacgcgcc gactggccgt ccttctactt ggactcgtcg cggctaccac
      121 cctcactggt tgtgcgtcta cgcccaactc tggtgaggtt ggagtggttc gtaacggtaa
      181 ggcgtggtac aacccgtttg actggctcga taaccacaag attcgcggca ttgtccccaa
      241 cggcaatggc aatacctggg ttggcatggg cagtagcgtc cattactacc cggtgaacac
      301 gcagcagagg ttcttcactc tgcaatcatg cgtgagcgat ggtgagttga ccccgtgtaa
      361 gggggccgac agtaccgcta tcacggtccc gaccgctgat ggtgtggagg ttactctctc
      421 tggtcagttc cttttcaata ccgcattcga cggtacggcc aggggtgaca gtctggtcaa
      481 ggacttcgac acgcaatact ccacccgtaa gttcgggagc aagcacccct acgagggtac
      541 cgagggttgg agtaattggc tggcggctat tgttgagccg accatcgtca ataacatgcg
      601 tcaggtcgtg tctggactga gttgtgccga gctagttagc tcatgcgccc tggtacagaa
      661 tggtgggcag caggccagtc agaaggcggc tgatcttgcc aacggtaagg tcaaccagaa
      721 taacgtacag cgtgtgcagg atgctgtcgt caagagccta caggctgact tgaagggtaa
      781 cctggggaat gactatttcc agaacatcag gttcaacctg actactgtgc gcctacccaa
      841 tcaggtgcag gactcgattg ataaggcaca gtctgccttc gctcaggtgt ctcagtcaca
      901 ggcgcgtgtg cagcaggcta aggctgacgc tgcggctaac gaggaacggc agaagggcta
      961 tgagaagtgt cctgcatgtg cgcagattga caccctcaag gctatcccgt cgaacgtgac
     1021 cacgttcgcc ccgggtgccg gattctcgat tacgagcggc aagtaatcat gggtcgagtc
     1081 gcagaagcta taatcctcct gggactcgta ggcggcggag gctggctctt ttgggctggc
     1141 ctccgcaagt cctataatgg cgtgcgtgaa gtcctgaata agaaagctga ttggggcatt
     1201 gcgaccgtag aggatgacga ccgtacagcc atttggctgg tgaagggctg gggcaaaagt
     1261 gttcatcttg acgcccccaa gggtttccga tacgcacatc tgatcggaac cgtagaccgt
     1321 gatcgtgatg attatactga gcgtatgatt gacctacagg tcgaagctga gtctaagcgt
     1381 gacgattgga ataacattca aagggcgcta aaatcatgac tcctgagaat aagaactttg
     1441 agtttcctta caaccggcag aagttgctgg ataagatcaa ggaaaataag ga
//
LOCUS       DATCGC010001416         1587 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_286158, whole genome shotgun sequence.
ACCESSION   DATCGC010001416 DATCGC010000000
VERSION     DATCGC010001416.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1587)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1587)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1587
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_286158"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            132..1148
                     /gene="aroF"
                     /locus_tag="VIJ87_13625"
     CDS             132..1148
                     /gene="aroF"
                     /locus_tag="VIJ87_13625"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: protein motif:HMM:NF006421.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HEY5445480.1"
                     /translation="MIVNMKRSASAEEIEHVIDRIKECGFQAHVVRGEERTIIGAVGS
                     SGRRSEIEALRAAPGVAEVIQISQPFKLVSRQLREAYTVVDVGGVKIGGGDLVIIAGP
                     CSVESRDQLLETARGVKASGANMLRGGAYKPRTSPYDFQGLGVEALRFLKEASNETGL
                     PIVTEVMSESDVEDVAEYADMMQVGARNMQNFSLLRKLATVPKPILLKRGPSATVKEW
                     LLAAEYLLAGGNNDVVLCERGIKTFETATRNTLDLAAVALVKELSHLPVLADPSHGTG
                     LRSLITPLSKAAAAVGADGLIIEVHPCPERALSDGPQSLDLPGFDTLMKELGRQPVKD
                     VKAA"
BASE COUNT          378 a          398 c          455 g          356 t
ORIGIN      
        1 cagccattgc cggtaagcgc gctgctgaaa tttacggcgg cgtaatagtt cgggaaaaca
       61 tccaggacga cagcgataac ttcacgcgct ttgtcctgct ttcaaagtca aactaagaag
      121 gaatcaaaca aatgatcgtc aacatgaaaa gatccgccag tgctgaagag atcgaacacg
      181 tgatcgaccg aatcaaggag tgcggatttc aagcacacgt agttcgagga gaagagcgga
      241 cgattatcgg cgcagtcggc agcagcggtc gtcgttccga gattgaggct ttacgcgcgg
      301 cacccggtgt tgccgaagtc atccagattt cacagccgtt caaactagtc agccgccaac
      361 ttcgcgaggc ctacactgtc gtcgatgttg gtggcgtaaa gattggcggc ggcgacctgg
      421 tgattatcgc cgggccatgc tccgtcgagt cgcgtgacca acttctggaa actgcacgtg
      481 gagtaaaggc ctcgggcgcg aacatgttgc gtggtggcgc gtacaaacca cgcacttcgc
      541 cgtatgactt tcagggcctt ggcgttgaag cgttgcgatt tctaaaagaa gcgagcaatg
      601 aaactggatt gccaatcgtt actgaagtga tgagtgagag tgacgtggaa gacgttgctg
      661 aatacgcgga tatgatgcaa gtcggcgcac gcaacatgca aaacttttcg ttgttaagaa
      721 aattggccac tgttcccaaa ccgattcttt tgaagcgtgg tccctcggcg actgtaaagg
      781 aatggttact ggcggccgag tacttgttgg ctggcgggaa caacgatgtc gtcttgtgcg
      841 aacgcggaat aaagaccttt gaaacagcta cgcggaacac gctcgacctt gcggcagtcg
      901 ccctcgtgaa agagctgtcg catctgccgg tgctcgccga tccgtcacac ggaacgggtt
      961 tacgcagctt gatcactccg ctttcgaaag cggccgcggc ggtcggcgca gacggattga
     1021 taattgaagt tcacccgtgt ccggaacgtg ccctgtctga tgggccacag tcgctggatc
     1081 ttccagggtt tgacacgttg atgaaggaat tgggacgcca gccagtcaaa gatgtgaagg
     1141 ctgcgtagtg agcagggttg ggtcttgtga acatcgactc ttcggatctg gaacgaagtt
     1201 ccaaatgaac aagtaggaag gtggtaagga catctcagtg ggtcgaacaa gctgggaagg
     1261 gtggcaagcg gaaagttgga cgcctttcgc gattaacccc gagcgcgccc ccgctgaggt
     1321 tcacttgtat cagctaagat tttcatatgg cgactcagcg ggggcgcgct aggaattgtt
     1381 agggcaacgc gtccaacttt ccgcttgcca cccttcccag cttgttcgac ccatttgagg
     1441 cgcttctaac tttgaagtct tactaaagct tcggatcgat cagagccttc atcacgcttc
     1501 ctgaggcaac tttcgcaagc gcttcatttg catcaccaag accaaatcga gtcagcttca
     1561 tttctttcca cggcgatgcc cagcttg
//
LOCUS       DATCGC010001417         1930 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_119405, whole genome shotgun sequence.
ACCESSION   DATCGC010001417 DATCGC010000000
VERSION     DATCGC010001417.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1930)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1930)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1930
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119405"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(46..1728)
                     /locus_tag="VIJ87_13630"
     CDS             complement(46..1728)
                     /locus_tag="VIJ87_13630"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEY5445481.1"
                     /translation="MKLLLVILSVILLSLVPTQPQVASADLVFKNGNVYTANDRSPNA
                     QAIAVKADRIVYVGTNAGVEKYVGTSTRVVDLQGKTVLPGFADAHQHLSGVGFREMTL
                     NLEGTTSLDDLLGKLKARVDQAKPGEWVTGRGWIETHWAPPVFPTRWDLDKVSPNNPV
                     ILGRADGHGAVANSAAFKIAGIDKNTANPFGGEISKDKQSGEPNGMLLDAAQGLVRRR
                     VPPTTREDAERAVVLGVKRDIELGWTQVQDAGGGYDDVEIFKKLYASGAIKLRIYKAV
                     YGPGASAKRLISEGPIIGDFQNRLTVRTIKVVSDGALGSRGAALLGPYSDATDTSGFL
                     TVKAEELRPMLIDALRKGIQVETHAIGDKANRFIIDEYETALNAVPRAERKIADPRWR
                     VEHAQIVNPIDIPRFAKLGIIPSMQPSHAIGDLFFAPSRLGMERLKGAYAWQSFIKSG
                     VVVPGGSDAPVERGEPMIEFYAAVARKDPKGFSAEGWHPEEAVTRAQALKMFTMWPAY
                     AAFEEKLRGSIETGKLADLTILSADIMTIPELEILKTQCVMTVINGEVVYEK"
BASE COUNT          454 a          551 c          485 g          440 t
ORIGIN      
        1 gttagacaga gacgaaaaca aacggctgag cgactgcgag agatattact tctcataaac
       61 aacttcgcca ttgataaccg tcatcacgca ctgcgtcttc agtatttcca actcaggaat
      121 tgtcatgatg tcggctgaca agattgttag atcggcgagc ttccctgtct caatcgagcc
      181 gcgtagcttt tcctcaaacg ctgcataggc cggccacatc gtaaacatct tcaaggcctg
      241 cgctcgtgtg accgcctctt ccggatgcca accttcagca gaaaaccctt tcggatcttt
      301 acgagcaacc gcggcgtaaa actcaatcat cggctcgccg cgttcaaccg gtgcatccga
      361 acctccggga acaacgacac ccgacttaat aaaactctgc cacgcataag cgcccttcaa
      421 tcgttccatc cccaaacgac tgggagcgaa gaacagatcg cctatcgcat gcgacggctg
      481 cattgatgga attatcccga gcttggcaaa gcgcggaata tctatcggat ttacgatctg
      541 cgcatgttca actcgccaac gtggatccgc tatttttcgc tccgctcgcg gaacagcatt
      601 caacgccgtt tcatactcat caattatgaa gcggttcgcc ttgtcgccaa tcgcatgagt
      661 ttcaacttga atacccttac gaagtgcgtc gatcagcatc ggccgaagtt cttcagcctt
      721 caccgtcaga aaaccggacg tgtcagtcgc atcggagtaa ggaccaagca gtgcggcgcc
      781 tcttgaacct aacgctccat cagaaacgac cttgatcgta cgcacggtca aacgattctg
      841 gaagtcaccg atgatgggac cttcgctgat caggcgtttc gcgcttgcac ccggaccgta
      901 aacagctttg tagatgcgca gcttaatcgc accggacgcg tacagttttt tgaaaatctc
      961 aacgtcgtcg taaccaccac ccgcatcctg aacctgcgtc cagcctagct caatgtctcg
     1021 cttcacaccc aacacgactg cgcgttcggc atcttctcgt gtggtggggg gaacacgacg
     1081 ccggacgaga ccctgtgctg catcgagcaa catgccattc ggttcaccgc tttgtttgtc
     1141 ttttgatatt tctccgccga aaggattggc ggtgttcttg tcgatgccgg caatcttgaa
     1201 tgccgcactg ttggccaccg ccccgtgacc atccgcccga ccgagtatca ccgggttgtt
     1261 gggagacact ttgtcgagat cccaacgcgt gggaaacacc ggaggcgccc aatgcgtttc
     1321 aatccaaccg cgaccagtta cccactcgcc cggctttgct tgatcgacac gcgctttcag
     1381 tttcccgagc aggtcgtcga gactggtagt gccttcgaga ttcagcgtca tctcgcggaa
     1441 gccgactccg gaaagatgct ggtgagcatc agcgaaacca ggcaacactg tcttgccctg
     1501 tagatcaaca acgcgcgtgc tagtgccgac gtacttttcg acgccagcat ttgttcccac
     1561 ataaacgata cgatctgcct taacggctat tgcctgggca ttcggagatc gatcgtttgc
     1621 tgtgtagaca tttccgttct tgaagactaa gtcggctgac gcaacttgcg gctgtgtggg
     1681 tacaaggctg agcaggataa cgctcaggat tactaacagg agtttcatag tttcccctcg
     1741 aagatagctt aagaatgcgg gtttaagaac agtcggcgag cgagaggttt atatcacaga
     1801 gcagagtgca tgagggaagg gggagcctcc ttggagtgcg ggggcccggc accgctttgg
     1861 gaaagagcgc cttaaattat cgatccactg tacaaaagcg gtgccgggcc agggcactcc
     1921 aaggagaaat
//
LOCUS       DATCGC010001418         1239 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_119437, whole genome shotgun sequence.
ACCESSION   DATCGC010001418 DATCGC010000000
VERSION     DATCGC010001418.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1239
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119437"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1239)
                     /locus_tag="VIJ87_13635"
     rRNA            complement(<1..>1239)
                     /locus_tag="VIJ87_13635"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          247 a          385 c          275 g          332 t
ORIGIN      
        1 gttcatgcac gtcggaactt acccgacaag gaacttcgct accttaggac cgtcatagtt
       61 acggccgccg tttaccggtg cttcggtcgc cagcttcggg gcgaacccct aaccgacttc
      121 cttaacattc cggcaccgag caggcgtcat tctgtataca tcgacttgcg tcttagcaca
      181 gaactgtgtt tttgataaac agtcgcccag gctgattcct gcgccctctc accgaagtga
      241 ggagggaccc cttgtcccga agttacgggg ttattttgcc tagttcctta accgcagttc
      301 tctcgagcgc cttaggatat tctcctcgcc tacctgtgtc agttttagta cggtcgacta
      361 cgtcgtcccc cgcacacttt tctcggcccc tcctccacag acttcggcaa caaaacggcc
      421 tcgagctgat ggcttacgcc acccccaacc cccacatcta accgggggat ctgccttgaa
      481 aaagtacacg cgacggttca accttcacag tcggtgcagg aatattaacc tgctgtgcat
      541 cgactacgcc tttcggcctc gccttaggat ccggctaacc ctgggcggat ttaccttccc
      601 caggaaacct taggctttcg gcgtgcagga ttttcacctg cattatcgtt actcataccg
      661 gcattctcac ttgcatgcgc tccaccactc cttacggtat ggcttcgacg cggcatgcaa
      721 cgctcatcta ccgcttgcga ttgctcgcaa actcgctgct tcggtatccc gcttattccc
      781 gatcatttac ggcgctactg ttctcgacca gtaagctatt acgcactttt taaatggtgg
      841 ctgcttctaa gccaacatcc tggctgtctc agaacaataa cttcctttcg aactaagctg
      901 gattttggga ccttagcagg cgatctgggt tgtttccctc ttgaccgcga agattatccc
      961 tcgcggactc actcccgaga tagtctcgac agtattcgga gtttgataga agcgtgtagg
     1021 cgggtagccc cacgtcttct ttcagtagct ctacccctgt cgagtagttg tctcgaggct
     1081 gcccctaaag gcatttcgat gagaaccaga tatctccccg tttgattaga ctttcactcc
     1141 tccccacagg tcatgccaga acttttcaac gttcacggct tcaagcctcc tcccgatttt
     1201 actcgggatt cactctgccc atgggtagat cacggggtt
//
LOCUS       DATCGC010001419         1953 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_87990, whole genome shotgun sequence.
ACCESSION   DATCGC010001419 DATCGC010000000
VERSION     DATCGC010001419.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1953)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1953)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1953
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87990"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            275..1672
                     /locus_tag="VIJ87_13640"
     CDS             275..1672
                     /locus_tag="VIJ87_13640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445482.1"
                     /translation="MEAALASWTGPASREPFVPGDVFCFSDHVLFLVFEDEDERDPLI
                     RAGIIFEAKTPEPLRKLDSFCSTLRGLLLSQFQKQGDATADFPQWELSKQNVPEGFRG
                     FIAKQDGDSLYTSLRKDTTSKRILAASNLEDEGARIFLRTARNADLEGSSVRLLTGET
                     PSHEVPIERLEAVGLVAREVQVSCRKTGHPLFRLPNPHALAVVTVSDATCGECGLPVA
                     DENVEEVIAPTQLASSLLEDGSWLVSRLHFLLREMGIPEREIAVGTSEGNGYGQIMAN
                     VCGESFLLVARDGDLTTAFARSAIDLEVETEACHLVIVATDRVHKEAAVLLQNHARRH
                     ISAGHDFEMILARDVASAGRELERALERVSQRVIAEQLCVLDNSLGLNVSRLVLTKFQ
                     FPRRVEEAKTPDVVDNTESTYSPTEPKLALAAYASMDFREAFNIGHGSVSSIDVTPEE
                     VLDLGPQPQSDNAVT"
     gene            1719..>1953
                     /locus_tag="VIJ87_13645"
     CDS             1719..>1953
                     /locus_tag="VIJ87_13645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445483.1"
                     /translation="MTSTPAVKSVKRRTKAQTPRSRSRSLDMPCSDTGLKDGDWKSEN
                     LKKESLTEDERWQQDIAALRRAAADLALRRNDPA"
BASE COUNT          503 a          482 c          536 g          432 t
ORIGIN      
        1 cgaagcaacg tcgttaccca gctacggtaa ctggacagga aaatgtccag atcaccgtcg
       61 cgcggccgaa ttaagatcag cccagaactg aaggacaggc aagaaaggtc atatgctatt
      121 tcttgaatgc aaagccctta attatgcggt agagagagaa ggtcgaacca ggctcctgca
      181 agaactgcag gagcagaatt tgcttcctct aatccgatcc acaagacacc attgttttga
      241 ggctgtgtta ggagattcag aacgaaccaa tgagatggaa gcagctcttg cttcctggac
      301 cgggccggca tccagggagc catttgttcc aggagacgtt ttttgttttt ccgatcatgt
      361 tctgtttctt gtcttcgaag acgaggatga acgagatccc ctaatcagag cgggaattat
      421 tttcgaggcg aagacgcctg aaccactcag aaagctcgac tccttctgct caactctgcg
      481 tggtttgctt ctttcacaat ttcagaaaca aggtgatgct accgctgact ttccgcagtg
      541 ggaacttagt aagcaaaatg tcccggaggg ttttagaggg ttcattgcga agcaggacgg
      601 agattcctta tacacaagct tgcgcaaaga tacgacaagt aagcgcatcc tggcggcgtc
      661 taacctcgaa gacgagggcg cacgtatttt cctccgcacc gctcgaaacg cagatctcga
      721 aggttcatcc gtcagacttc taactgggga aacgccgtcg catgaagtgc caatagagag
      781 actcgaggcc gtcggactgg tcgctaggga agtgcaggtt agttgcagaa agactggaca
      841 tcccctcttt cgattgccca atccacatgc actggcagta gtaaccgtta gcgacgcgac
      901 ttgcggtgag tgtggcttac cagtggccga tgaaaacgtg gaggaagtga tcgcacctac
      961 ccaactcgct tcctcactac ttgaagatgg gtcctggcta gtcagtcgcc tccatttcct
     1021 gttgcgcgag atgggaattc ccgaaagaga gattgccgtc ggaacttctg aaggcaacgg
     1081 ctatgggcag atcatggcta atgtgtgcgg cgaatcgttc ctgttagttg ctcgcgacgg
     1141 cgacttaacg actgcttttg ctcgatcagc cattgatctt gaggtcgaaa ctgaggcttg
     1201 ccatctggtt attgtggcta ctgacagggt tcataaagaa gcagcggtcc tactgcagaa
     1261 tcacgcgagg cggcacatca gcgcaggtca cgattttgag atgattctgg ctcgcgatgt
     1321 agccagcgct gggagggagc tggagagggc ccttgaaaga gtgtcccaac gagttattgc
     1381 ggagcagctg tgcgttcttg ataacagtct cggtctaaat gtgagtcgac tcgtgctgac
     1441 caagtttcag ttcccgcgcc gcgttgaaga agcgaaaact ccggacgttg ttgacaacac
     1501 ggagtcgact tactcaccga ccgaacctaa gttggcgttg gcagcttatg catccatgga
     1561 ctttcgagaa gccttcaaca tcggtcatgg gtctgtaagc tctatcgacg tcaccccaga
     1621 ggaggttctt gaccttgggc cacaacctca atccgacaat gctgttacct gagagaaaga
     1681 caaaacggat ccggaacctg tgcgaagagg agtaacgcat gacgagcaca cccgctgtta
     1741 aatcggtcaa gagacgtacg aaagcacaga cccctcgatc acgtagccgt tcattggaca
     1801 tgccatgctc ggacactggc ctgaaagacg gagactggaa gagcgaaaac ttgaaaaaag
     1861 agagccttac ggaagacgaa cgttggcaac aggatatagc ggcattacgc agagcggctg
     1921 cggatctggc gcttcggaga aacgacccag caa
//
LOCUS       DATCGC010001420         1265 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_152387, whole genome shotgun sequence.
ACCESSION   DATCGC010001420 DATCGC010000000
VERSION     DATCGC010001420.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1265
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152387"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1265
                     /locus_tag="VIJ87_13650"
     CDS             <1..>1265
                     /locus_tag="VIJ87_13650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445484.1"
                     /translation="NYDYYSSGQMPNTYSSTVDTPWASPTGLTFNDLKNIDPFSSISN
                     VSINTRDVDSNEIPRVANFSLTVEKRLPMNNILSVAYVGTQGRHLPQQRNLNIIPLGK
                     LLTGTASGVDLSVPANRAGLDGSVLRTFRPYDAYNSVGAFQFTGTSTYHSLQATLNHS
                     GKNLQYFATYTFGKALGTVATNESDGAAWADPIDTRGRSWGVLPFDRTHVFNLSYNYS
                     LPNFAKGAFDNTVGRGFLNGWQMSGITTVQSGIPIRLRFTGDIATSGQAQAWYGSDAF
                     NGTNAGASLGAVTPIYTGNPQLGGTTLGAKSYDLSKLKIPTFPNTGPSQPPFYIRTPG
                     RSNFDISFFKNFNISESKKFQFRTGLFNVFNQAYPTQINTTSTNLTGSDIFLTLDTVC
                     NVRTNVNNGAGNPAVSVCDPLGGFRYTDGR"
BASE COUNT          322 a          338 c          292 g          313 t
ORIGIN      
        1 aactacgact actattccag cggccagatg ccaaatacgt acagctcaac ggttgatact
       61 ccatgggcat cacccaccgg ccttacgttt aatgatctca agaatatcga cccgttctcg
      121 tcgatttcaa acgtaagcat caacacacgt gacgtcgact caaacgaaat tcccagagtt
      181 gctaacttta gtttgacggt tgaaaaacgg ctgccgatga acaacatctt gtccgttgct
      241 tatgtcggca cacagggcag gcatctgccg caacagcgaa atctcaacat tattcctcta
      301 gggaaattgt tgactggaac cgcgagtggt gtggatctgt cggttcccgc aaaccgagct
      361 ggtcttgatg gttcggttct tagaaccttt agaccgtatg acgcatacaa ctcggtgggt
      421 gctttccaat tcaccggaac gtcaacgtat cactcattgc aggctacctt gaatcactct
      481 ggaaagaatc tgcagtactt tgcgacctac acctttggta aggctttagg aaccgttgcg
      541 acaaacgaga gtgatggtgc tgcatgggcc gatccaatcg acacgagagg cagaagctgg
      601 ggcgtccttc cattcgacag aacgcacgtc ttcaatctct cctataacta ttcacttccg
      661 aactttgcca aaggggcatt cgacaatacg gtcggtagag gtttccttaa tggttggcag
      721 atgtcgggca tcaccacggt tcagagtggt atccccattc gcctgagatt tacaggtgac
      781 atcgcaacct caggacaggc acaagcatgg tacggctccg acgctttcaa tggtacgaat
      841 gccggcgcca gcttgggagc cgttactccc atctatactg gtaacccgca acttggtgga
      901 acgacgttgg gagctaagtc ctacgattta tcgaagctca agattcctac attccccaac
      961 actggaccat cgcagccacc gttctacatc cggacgcctg gccgcagcaa ctttgatatt
     1021 tcgttcttca agaacttcaa catcagcgag tctaagaagt ttcaattccg gacgggctta
     1081 ttcaacgtgt tcaatcaagc ctatccgact caaatcaaca ctacctcgac taacttgact
     1141 ggtagcgata tcttcctaac actcgacact gtttgcaacg taagaacgaa cgttaataat
     1201 ggtgccggta atcctgcggt gagcgtttgc gacccgttag gtggcttccg ttatacagac
     1261 ggtcg
//
LOCUS       DATCGC010001421         1536 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_385924, whole genome shotgun sequence.
ACCESSION   DATCGC010001421 DATCGC010000000
VERSION     DATCGC010001421.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1536
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_385924"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1190..1462)
                     /locus_tag="VIJ87_13655"
     CDS             complement(1190..1462)
                     /locus_tag="VIJ87_13655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445485.1"
                     /translation="MKRLIATLLFLASFAVVSAFAQKTSLKEQIVGTWIHVSTTVTAP
                     DGKKMDRLGQGVLIYAPDGYFTFVNVANNLPKLAANNRDKATVEEA"
BASE COUNT          360 a          389 c          399 g          388 t
ORIGIN      
        1 gtcatggact agcgtaaaat tgcgcgctaa atcgcgggtg tagttcaatg gcagaacggc
       61 agcttcccaa tattagtaag cgaggctcac ccacacaccg tccagccatt ggtctgaccg
      121 ctcaccctgc catcggttga accactcagt gtgatatcca gcccggtgtc tggaatgggt
      181 gtgaccattc cttcaccatc acgatcgcta tctcacttca gagatcgcac ttcagtaaaa
      241 caggtatatg ggtggagagg cccaacattt actgaagggt gcccgaaccg tctttagtcg
      301 tgatggtgat caggaattgc tgttcattgt gatcggtgca gaaaaatccg acctgtttaa
      361 acgcgttctg gcgtgaacaa atcgactgac tgggacctgc tatgccaatt tgatttgttg
      421 tacatcgagg tgatcggaag agtcgaacgt tgcaaactga accagcgttc gtgtgttcca
      481 ggttcaacgt ggtggattcg acgttgatcg accctgaatg tctaccagtt caactggcgg
      541 tggctggaat gtcgtgatgg actgcgacgt tacaggccca tggctgaaga tttgaaagct
      601 gtggcgatgg gggttgtagc agtaataatg tctgcttccg acccgaagcg gacttttaac
      661 gttatgttga gcggcgcgca gcgaccacgt gcgcaggaac cgatgaagca ccggcgcatg
      721 cagacgcgac accgcttcca gcgcgtccgc tccaactgaa gttagaccac attgtctcga
      781 agcgtccctg tttcgctcaa acgctcaaag gtctagaacc gtttcagaat tttgctggat
      841 tgcgtcgcgc gcggcggcgc cgtacaggct tttgagaatt tcgggctgcc catgaatctg
      901 atcgagcgtt tcgtaaggca cgcagtcgcc gaaactacag caactggcgc gaatcgtccg
      961 ctacgtccaa atcttatttg gctcgtcgcc acacgatttc tagtacgcct gctggtgcct
     1021 ttggattcgt gaagcgcatt tcatccgccg ttatcgacgt aacaattcgg ctttgatcgg
     1081 tccctaccat attaggaaac gtcgctcctt caactttagg gacgatggtt ttcgtccctt
     1141 catcaaccgt gtaggtaccg tagtaggcta ttgatcccgc gacgattgcc taggcttctt
     1201 ccaccgtcgc cttatctcgg ttgttagctg ccaacttggg aagattattc gcgacattca
     1261 cgaaggtgaa ataaccgtcc ggggcataga ttaaaacacc ttggcctagg cgatccattt
     1321 tcttaccatc cggcgcagta acagtcgttg aaacgtgaat ccaagtgcca actatttgtt
     1381 ccttgagtga ggttttctga gcaaaggcac tcacaacggc gaaagatgcg agaaacaaca
     1441 aggtagcgat taagcgtttc atttaaatct ccctaaagtg aacggaaact acgccacact
     1501 taacccagct ctgttaatta tgggggctgt tggggg
//
LOCUS       DATCGC010001422         1059 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_321706, whole genome shotgun sequence.
ACCESSION   DATCGC010001422 DATCGC010000000
VERSION     DATCGC010001422.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1059)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1059)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1059
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_321706"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            116..556
                     /locus_tag="VIJ87_13660"
     CDS             116..556
                     /locus_tag="VIJ87_13660"
                     /inference="COORDINATES: protein motif:HMM:NF014439.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445486.1"
                     /translation="MFAGEYLCKVDEKGRFIVPSPIREQVESEGQAVVFLKGPEDSTL
                     IYSMKEWEKVLERTKTTLDEDQSRLFMHFVVSEAGTSELDKAGRILIPSRLRKVIPLD
                     EDQEIILIGLYHRMEIWNPSTWRRYISQSEERYEQNMSKILNLL"
     gene            792..>1059
                     /locus_tag="VIJ87_13665"
     CDS             792..>1059
                     /locus_tag="VIJ87_13665"
                     /inference="COORDINATES: protein motif:HMM:NF017663.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445487.1"
                     /translation="MNGRRLISSAGRAYKIQVGQLVWLKLAQSTHRATLLTRLQSEWL
                     ALSIRFYFTSALRRDVDGGLKIAQDALCEGLGINDNRIVETHLYK"
BASE COUNT          252 a          307 c          264 g          236 t
ORIGIN      
        1 cagattcccg ctttcaagct tggaaaagaa tggcgcttcg tacgctcgga tctcgagcag
       61 tggattcgcg atcgcaccag aaccacgctg gcgtcgtaaa ggagaggctc cattgatgtt
      121 cgccggggaa tacctctgca aagtagatga aaaagggcga tttattgtcc cctcgccaat
      181 ccgggaacag gtcgaatcgg agggacaggc cgtcgtcttc cttaaagggc cggaagactc
      241 gacgctcatc tactcgatga aagaatggga aaaagtcctc gaacggacga aaaccaccct
      301 tgacgaggac cagagtcggc tcttcatgca cttcgttgta tcagaagccg ggacatcgga
      361 actcgataag gccggtcgca ttctcattcc cagtcgactc agaaaagtta ttccgttaga
      421 cgaagaccag gaaatcattc tgattggctt ataccatcgc atggagatct ggaatccgag
      481 cacgtggcga cgctatatct ctcaatctga agagcggtat gagcagaaca tgtcgaagat
      541 cctcaatctc ctctaaactt acacgcatgc ctacgttccg gcgtcccccc cgatttcctt
      601 cttctcctcg agctgttcgg ctggcctcct accgaagccc tgagaaaaga cttgcggtaa
      661 cgcgtctccc cctcagaacg acgccgagtt cccgcatgcc tgcgtcccag tctttacatc
      721 caccaatcgg gaaccacgcg gtaatcttga cgctcccggt gcctcccagc gtaaaccatc
      781 aatatgcgac agtgaacggc cggcgattga tctcttcggc cggtcgcgcc tataagattc
      841 aggtggggca actcgtgtgg ttgaagctgg cgcagtccac tcatcgtgct acccttctta
      901 caaggctcca gtcagagtgg ctcgctctat ccattcgatt ctattttacc tcggccctac
      961 gacgggacgt cgatggcgga ctcaagatcg cacaggatgc tctctgtgag ggactcggca
     1021 tcaatgataa ccgcatcgtt gaaacccatc tctacaagt
//
LOCUS       DATCGC010001423         1033 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_119534, whole genome shotgun sequence.
ACCESSION   DATCGC010001423 DATCGC010000000
VERSION     DATCGC010001423.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1033)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1033)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1033
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119534"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(196..543)
                     /locus_tag="VIJ87_13670"
     CDS             complement(196..543)
                     /locus_tag="VIJ87_13670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445488.1"
                     /translation="MILNRQAPLSSMTIRCLLSLWLFFGCLELVETLQLIPEAGVEDQ
                     AGLDPDEDALAALESGLKSDVLLAGDNLPSVSTAIVQPTFSVSFAGFDPFTNQSLPPP
                     SLPLYQQFSVYRI"
BASE COUNT          271 a          248 c          271 g          243 t
ORIGIN      
        1 tagggtggat caatttgtgc ataggttcac acaacgattt ggtcacgcaa tatcttcaga
       61 gatcctttcc caagcgcctg cggaaattcc gcgtactgcg cgctgtcgga acgacccagc
      121 gaatcattcg tagccgatga cctcacgcgg cggaagtcac ccgcctcgat gagtcagcga
      181 ctcactgggg atcaatcaga tgcgatagac ggagaactgt tgatagagcg gtaaagaagg
      241 aggaggaagg ctctgattcg tgaatggatc gaacccggcg aacgacacag agaaggtcgg
      301 ctgtacaatc gcagtactaa ctgagggaag gttgtcgccg gcaagcaaca cgtcagactt
      361 gagtcctgat tcgagcgcag cgagcgcatc ttcatctggg tctagacctg cctgatcttc
      421 gacgccagct tcgggaataa gttgtaacgt ctcaaccagt tccaagcagc caaagaagag
      481 ccacagggag agcagacacc ggatggtcat actagagagt ggtgcttgtc gattcagaat
      541 catcgtccaa ctcttaacag aaatgtcgac atactaagaa cagaaggcgg aaggttgaat
      601 caatctaagc atactctcgt ttaacacaat tgcgaattta atgcacgcat ttgtttccaa
      661 tattttcaca ttatgaagtt ttctttgcat tcatttttct tcatgcattc atcaggtgag
      721 taggcgatag ccagttatgg ccatttccca gtgagatgtt atggaaatac catttgtgcc
      781 agcatggata cttgcgcgtc tcccgctttt acatgaagac gctcatgggg ctgagggagc
      841 gcttctgggc ctgacggacc gataagccct agctgaagac aggaaacgaa atcactcgca
      901 ctcgggaatc tcctcagtcc catgccacgt agtcggtggt aagctcgaag atattttggg
      961 gactggtcgc cctacctgtg gggtcgctct ggtccctcga acgaagggat aattgaagtc
     1021 cactaaactt ggc
//
LOCUS       DATCGC010001424         1419 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_286285, whole genome shotgun sequence.
ACCESSION   DATCGC010001424 DATCGC010000000
VERSION     DATCGC010001424.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1419)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1419)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1419
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_286285"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..853)
                     /locus_tag="VIJ87_13675"
     CDS             complement(<1..853)
                     /locus_tag="VIJ87_13675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445489.1"
                     /translation="MTSIFTPDDRRTRQRILEAAVVLIAQRGLSLELLKESAALAGYP
                     VERAEVFFRRDEDLVVAFYARLAAQLEARVTELPEGDLATRFKAGMLFKLEMIAPHRE
                     TFASLLATLLDPRHELGVLSPQTQIIRDRVMSFFSAVVLGATGSRDSGNPEVVRSLYA
                     AHLAIILLWSQDRTGDSLATRAAIDLVSDLLSLSSKLAWLPNINKSLGKLDAISAQFV
                     EPPPDREQTQLSVEILRQLFTHRRLQADTGTCVKSPCEQCFALHLPKVRRFVAANEPI
                     HFLLPAFP"
     gene            complement(1031..>1419)
                     /locus_tag="VIJ87_13680"
     CDS             complement(1031..>1419)
                     /locus_tag="VIJ87_13680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445490.1"
                     /translation="ITKTTNGIMITSNKAAYNYAEFEMRLTGNPKEVSDAYIVLANVF
                     NAGASDEEDPLTEQPRRMIFAKGSPPANKVATMAKGDTLHVLGIPRVNLNEVYAIANG
                     MQGHDEYAFGGLPYEMIIVAVLKDAD"
BASE COUNT          355 a          352 c          379 g          333 t
ORIGIN      
        1 ccgggaaggc aggcagcagg aaatgaatag gctcgttcgc ggcgacaaag cgtcgcacct
       61 tcggaaggtg aagagcgaaa cattgttcgc aaggactctt aacgcaggtt cctgtgtctg
      121 cctgtaagcg tctatgtgtg aaaagttgcc tcagaatctc gactgataac tgtgtctgct
      181 ctcgatcagg cggaggttcg acaaactgtg cagagatcgc atcaagtttg ccgagtgatt
      241 tattgatgtt gggtagccag gcaagtttgc tcgatagcga aagcagatcg gacacgagat
      301 caatggctgc tcgcgtcgcg agcgaatcac cggttcgatc ctgactccac aagaggatga
      361 ttgccagatg cgcagcgtaa agactgcgaa ccacttcagg attgccactg tcgcgactgc
      421 cggttgctcc cagtaccact gcactaaaga agctcatcac acgatcgcga atgatctggg
      481 tctgggggct aagcactcct aactcatgac gtggatcgag cagtgtagct aacagcgaag
      541 cgaatgtttc tcggtgaggc gcgatcattt ccaacttaaa caacatgccg gctttgaatc
      601 gcgtggcgag atcaccctca ggcaactcag tgacgcgtgc ttcgagttgg gcagccagtc
      661 gggcatagaa cgcgaccacc aggtcctcat cgcgtcgaaa gaagacttct gctcgctcaa
      721 ctggatatcc ggcaagtgct gcagattctt tcaacagttc cagtgaaagg ccgcgctgag
      781 cgatgagcac tacagcggct tctaatatgc gctgtcgagt ccgtcgatca tcgggagtga
      841 atatcgaggt cacagtttct gagggacaag tttcacggat aagagcgtca cgacatcgtt
      901 atgtcagggc acgatacgtc ggcacatgtt ggacatcaca ataccactgc agtgcaaggt
      961 gaacccaacg gaaaatgccg cctgagttga agaagaattg taatgaaatg atttgagcta
     1021 agaggttgtt ctaatccgca tctttcaata cagcaacaat gatcatttcg taaggtaagc
     1081 cgccaaaggc atactcgtca tgaccctgca ttccgttggc tatcgcataa acttcattca
     1141 ggttcacacg aggaataccc agtacgtgca acgtatcacc cttcgccata gtggcgactt
     1201 tgtttgcagg cggactgcct ttggcgaaaa tcatgcgacg gggttgttcg gttaaaggat
     1261 cttcttcgtc ggacgcgccc gcattgaaaa cattggcgag cacgatgtag gcgtcactta
     1321 cttccttcgg attgccagtc aaccgcatct caaattccgc gtagttatac gcagctttgt
     1381 tgctggtgat catgatccca ttggtcgtct tggtaatcg
//
LOCUS       DATCGC010001425         1187 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_218801, whole genome shotgun sequence.
ACCESSION   DATCGC010001425 DATCGC010000000
VERSION     DATCGC010001425.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1187
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_218801"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..524)
                     /locus_tag="VIJ87_13685"
     CDS             complement(<1..524)
                     /locus_tag="VIJ87_13685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HEY5445491.1"
                     /translation="MRKGRVPNGFVALLCFLAVFVPTTFAEQLPVSNYTSADGLGSSF
                     VNALMRDSRGFLWVCTRDGLSRFDGSHFVTYQVGDKNAAPGIEQILETRKGIYWIVTT
                     GGLYRFDPNPPVSSKPNNVGRPTLNAQFVSNERGLLFEDHAGQLWAGGSSLYRVNYSD
                     QKVSFQPVDLNLPNP"
     gene            888..>1187
                     /locus_tag="VIJ87_13690"
     CDS             888..>1187
                     /locus_tag="VIJ87_13690"
                     /inference="COORDINATES: protein motif:HMM:NF018867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY5445492.1"
                     /translation="MKSLICVVCYSLFVLVAFPREALSKSSNLANRIEGQVYDPNHRP
                     VENLYVELLNEVDSVIQRTKTTASGRFSFVGVPPGRLTVRVVTFGTNFMEQTQEVI"
BASE COUNT          309 a          297 c          300 g          281 t
ORIGIN      
        1 gggttgggca ggttcaaatc aacaggctgg aaggagacct tttggtcact gtaattcacg
       61 cgataaagac tgctgccgcc ggcccaaagc tggccggcgt ggtcttcgaa aagcaggccg
      121 cgctcgttgc tgacaaattg cgcgttgagt gttggtctac cgacgttatt tggtttggag
      181 gaaactggcg gattgggatc gaaccgatat aatccgccag tcgttacaat ccaataaatg
      241 cctttacgtg tttcaagaat ttgttcgatg cctggcgcag cgttcttgtc gccgacctgg
      301 taagtgacaa agtgagaacc atcaaagcgg ctcaggccat cccgcgtgca gacccacaag
      361 aatccgcgcg agtcgcgcat aagagcgtta acgaaactac taccaagacc atcagccgaa
      421 gtgtagttgc ttaccggcaa ctgttccgcg aaagtggtag gaacgaagac tgcaagaaaa
      481 caaagcagtg cgacgaagcc gttggggact cggccctttc tcatgcgcgt aacactacaa
      541 taatttgaca cgtgaaagcg atgtcagaac caccacctca ctctggttgg atcagcccat
      601 tatgaatcgc cacttggcgg caaatatttt gacccatgat tcctcgaagc gactgtgatc
      661 accagcagcg tttcacgtcc agatttgatc tcaaagaaac tcggtcgcga ttgagcatag
      721 tgtcacgaca atggtcgcgc aaatttacgg cgcgaagcgg acgataccat tgaaccttct
      781 taatggtctg tcatttgagg atctactata atcgcagcaa atcgtcggct cacctgattt
      841 cctcgagtac gagaactttc tatgcaagag gtgaagaacc catgctaatg aaaagtctaa
      901 tctgcgttgt gtgctactca ctttttgtgt tggtcgcatt cccgagggag gctctttcaa
      961 agagttcaaa tcttgctaac cgaatcgaag ggcaggtgta tgacccaaac caccgtccgg
     1021 ttgaaaacct ttatgtcgaa ctactcaacg aggtagattc ggttattcag cgaaccaaga
     1081 ccactgcttc cggccgcttc tctttcgtag gagtcccacc ggggcgtctc acagtaaggg
     1141 tggtgacctt cggcacgaac tttatggagc aaactcaaga agtcatc
//
LOCUS       DATCGC010001426         2146 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_152461, whole genome shotgun sequence.
ACCESSION   DATCGC010001426 DATCGC010000000
VERSION     DATCGC010001426.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2146)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2146)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2146
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152461"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..782)
                     /locus_tag="VIJ87_13695"
     CDS             complement(<1..782)
                     /locus_tag="VIJ87_13695"
                     /inference="COORDINATES: protein motif:HMM:NF016471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0019068 - virion assembly [Evidence IEA];
                     GO_process: GO:0019082 - viral protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 family phage prohead protease"
                     /protein_id="HEY5445493.1"
                     /translation="MDNLEVRSFIVRSVDTENRTIEGIAAPYDELFEAGDFNERFDQG
                     VFSDFGSDANVRLYSEHDHLDKRAPIGMVTEGRNTGDGFQIRAHISETPKGNEVYQLL
                     KDGVLRNFSVGFTPVESEYDEGTNTVTHKRAELKEVSVVAFPAYQSAQVLAVRDDSSM
                     NKNEKGVSNETTMTENIEFASVADLDEVRNAVNEIDRKMAVAGEKKEDASSQFRSAGA
                     FVKAHAEGNEAAVAEYRAYTGATTAKSHQSNGWLDSTLQIDW"
     gene            complement(769..1881)
                     /locus_tag="VIJ87_13700"
     CDS             complement(769..1881)
                     /locus_tag="VIJ87_13700"
                     /inference="COORDINATES: protein motif:HMM:TIGR01537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0044423 - virion component [Evidence
                     IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0019068 - virion assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HEY5445494.1"
                     /translation="MEKTSFIKRTAIALGFADPEVRSVELPIISSPYSSVNPYNLTAV
                     DGVVSIDRAMGLAAVAAAVAKITTAISQLELGVWRGTEELPQPTTSIIVQPNIGISLS
                     AFLEQTVMSLVLNGNAYWLLTKDSPTAAVQNISVLDPNRTRIEYDDNGTQWYREGDNR
                     YPAWRVYHLWNIRMPGYSYGVGPIQVGQNEIRGALDLRNYADNWFTSGAQPNGVLKTD
                     QAITADMADAYKARWAEQINGAYGPVVMGNGLTYTPITLNPSDAQWLESQRFSQAQIA
                     RMFGVPGILMDLPSGDSMTYSNREDVINDFYRFTLKKYLTEIEAAFSSILVRGQVARF
                     KVDPLLGMVPEGDLATPDAQGSNANTNTGDNTNGQS"
     gene            complement(1934..>2146)
                     /locus_tag="VIJ87_13705"
     CDS             complement(1934..>2146)
                     /locus_tag="VIJ87_13705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445495.1"
                     /translation="TAYALIASGQVTHNDDQLLRNQMPFAVRKNSGDAWRINRQASTV
                     SIDAVMATVLGIYAASTDNGPTQELF"
BASE COUNT          442 a          539 c          572 g          593 t
ORIGIN      
        1 caccagtcaa tctgcaatgt gctgtctagc cagccgtttg actggtgtga cttagcagtg
       61 gttgcacctg tgtaggcacg gtattccgca actgcggctt cgttaccttc ggcgtgcgcc
      121 ttgacgaatg cgccagcaga acggaattgg ctagatgcgt cttccttctt ttcaccggca
      181 accgccattt tgcggtcgat ttcgttaaca gcgttgcgaa cttcgtctag gtccgcgacg
      241 cttgcgaatt caatattttc tgtcatagta gtttcgttag aaaccccctt ttcgttttta
      301 ttcattgaac tgtcatcgcg gacagccaaa acttgtgccg actgataagc cgggaatgcg
      361 acaacggata cttccttaag ttccgcgcgc ttgtgcgtta ccgtgttggt gccttcgtcg
      421 tattcgcttt caactggcgt gaagccaacg ctgaaattgc gaagtacacc gtcctttagc
      481 aactgataaa cttcgttgcc cttaggggtt tcgctgatgt gtgcacggat ttggaatccg
      541 tcacctgtgt tacgaccttc tgtgaccatg ccgattgggg cacgcttgtc taggtggtcg
      601 tgttccgaat aaagtcttac gttcgcgtca gaaccgaagt cgctgaaaac accttggtcg
      661 aatcgttcgt taaagtcacc ggcttcgaac agttcgtcat acggtgcagc gattccttcg
      721 attgtgcggt tttcagtgtc aacggaacgg acgatgaaac tgcgtacttc aagattgtcc
      781 atttgtgttg tcacctgtat ttgtattcgc gttactaccc tgcgcgtcag gtgtggctag
      841 gtcgccttcc ggcaccatgc caagcaatgg gtccaccttg aaacgggcta cttgtccacg
      901 tacaaggatg gatgaaaatg cggcttcgat ttcagtcaga tacttcttaa gcgtgaagcg
      961 gtagaagtcg ttgataacgt cttcacggtt gctgtacgtc atggaatcgc cagacggtag
     1021 gtccatcagg attcctggca caccgaacat gcgtgcaatc tgcgcctgac tgaaacgctg
     1081 gctttctagc cactgtgcat cggatgggtt aagtgtgatt ggtgtatagg taagtccgtt
     1141 acccatgact accgggccgt aggcaccgtt aatctgttct gcccagcgcg ccttgtaggc
     1201 gtctgccatg tcagcggtaa tggcttggtc tgtcttcaat acgccgtttg gctgtgcgcc
     1261 ggacgtgaac cagttgtctg cgtagttgcg taggtccagg gcaccacgta tttcgttctg
     1321 tcctacttgg ataggtccca cgccgtagga atagccaggc atgcgaatgt tccaaaggtg
     1381 gtacacgcgc catgctgggt acctgttgtc gccttccctg taccactgtg taccgttgtc
     1441 gtcgtattca atgcgggtac ggttagggtc aagcacgcta atgttctgta ccgccgctgt
     1501 aggcgaatcc ttggttagca accagtaggc gttaccgttc agcaccagcg acataactgt
     1561 ctgttctagg aatgctgata gggaaatacc aatgtttggc tggacgatga ttgaagtagt
     1621 tggctgcggt agttcttctg taccgcgcca cacgcctagt tctagttgac taatggcggt
     1681 tgtaatcttg gcaacggctg cggccacagc cgctagaccc attgcacggt caatgctgac
     1741 aacaccgtca acggcagtca ggttataagg gtttacggaa ctgtacgggg aactgataat
     1801 aggcagttct acgctgcgta cttccgggtc tgcgaatcca agcgcaatag cagtgcgctt
     1861 gataaaactt gtcttttcca tctaccacca atataaaggt ggtactgcaa agttgttgcc
     1921 attagcccta acgtcagaac agttcttgtg ttggtccgtt atctgtggac gctgcgtata
     1981 ttccaagtac cgtcgccatg actgcatcaa tggataccgt gcttgcctgt cggttaatgc
     2041 gccaggcgtc accgctgttc ttgcgaacag caaacggcat ttggttacgt agcaactggt
     2101 cgtcgttgtg cgtcacctgg ccgctggcga ttagggcata ggcagt
//
LOCUS       DATCGC010001427         1028 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_321766, whole genome shotgun sequence.
ACCESSION   DATCGC010001427 DATCGC010000000
VERSION     DATCGC010001427.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1028)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1028)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1028
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_321766"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..702
                     /locus_tag="VIJ87_13710"
     CDS             <1..702
                     /locus_tag="VIJ87_13710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445496.1"
                     /translation="SPIANPSPSPSATGNQLPSPSPTTPDLDVLIQQKIRQLKQGQIA
                     SEIPSQMRQGESERISARISSQDIGDLITKGLKGNGLPEVDHIPVDTTMKLVLYPSKA
                     EAFDIKLAGDEIKNVSNRLDRPYTDWEWDVTPRESGNQELHLKASVIMHLPGFPEAQT
                     FEVPVKDRRVQVQIDYGYVAKGFLTNWENLRWVLGAAGSIILLLGGWKGWSKLRSLAS
                     KNKQTSNNQKRNKKK"
BASE COUNT          310 a          252 c          238 g          228 t
ORIGIN      
        1 tcccctattg caaacccatc accttcaccg agcgcaaccg ggaatcagct tccatctccc
       61 agtccaacta cgccggacct ggacgtcttg atccaacaga agatcaggca attgaaacaa
      121 ggacaaatag cctcggagat cccctctcaa atgcgacagg gagaatcgga aaggatatcc
      181 gctcgaattt cttcacaaga catcggcgat ctgatcacaa agggtctaaa aggaaacgga
      241 cttcccgaag tagatcacat acccgttgat acaacgatga agctcgttct ttacccgagc
      301 aaagcagaag cgttcgatat aaagctggcg ggagatgaaa taaagaatgt ttcgaatcgg
      361 ctagatcgcc cctacacgga ttgggaatgg gatgtgacac ctagggagtc tggcaatcag
      421 gaactgcatc tgaaggcttc agtgatcatg catcttcccg gattccctga agctcagact
      481 ttcgaagtac cagttaaaga tcgaagggta caagtccaga ttgactatgg ctatgtagca
      541 aaaggctttc taacaaattg ggaaaacctc aggtgggttt taggagctgc tgggtctatc
      601 atccttctac taggtggctg gaagggttgg tccaaactgc gaagccttgc atctaagaac
      661 aagcaaacct caaacaatca aaaaagaaat aagaaaaaat aacggctcgg atattcgccg
      721 cggcttaccg tggagagtcg gtggtcagtg gtcagtaata ggacctacat gacctatgag
      781 acctattcac cgctgactac accagcaact accctgcttg actgtcctcc attcgagacc
      841 tgatgatcca atcgctcttc aacaaacttt taatctggca gagagagaga aagatgtctg
      901 actatcgatt cattcaactc gacgtcttca ctgacaaatc atttaccggt aatccactcg
      961 cagtctttcc agaagccgaa ggtctgacgg acgaacagat gatgcagatt gcgcgcgaga
     1021 tgaatctg
//
LOCUS       DATCGC010001428         1264 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_418719, whole genome shotgun sequence.
ACCESSION   DATCGC010001428 DATCGC010000000
VERSION     DATCGC010001428.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1264)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1264)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1264
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_418719"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            391..963
                     /locus_tag="VIJ87_13715"
     CDS             391..963
                     /locus_tag="VIJ87_13715"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEY5445497.1"
                     /translation="MTSLKRSILSAVALTVICLVAAARTNADPLVLTISNPNQTVTPG
                     TWISFTGTLTNSTPLAFHIGGPGILAPTSLVNIGDIDIPSNFLTDPGPMFTVSGGVLD
                     VRISPTAAPGSYTAWLELGGFFSDGSLGFAIGEVNINVITPSSVPEPASMILFGTGLI
                     GAAGLTRRYQKRSLRSVTNKFKTLKKSIPS"
     gene            991..>1264
                     /locus_tag="VIJ87_13720"
     CDS             991..>1264
                     /locus_tag="VIJ87_13720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445498.1"
                     /translation="MEIRVKEMKAIEEITIRTRASAYRFRLVDPVQGKGVLTGGRLSE
                     EQEAIFGETIRPTDSATPLLDQLEPGNRAVFLVGSTELKTITTSPIT"
BASE COUNT          328 a          319 c          318 g          299 t
ORIGIN      
        1 gcgggcgttc ccgaacgggt tcagcacacc taatagcaag ctcaacatag gcttgaatgc
       61 aatgacctct gtcttcgagg caacgaacaa atcaattcga ccggaggcat aggtttaaag
      121 ggggactgag aacaccacac actcttttta aaaatcgact caatttcgcg tgatgctttt
      181 cgtcgagttg ccactagttg atgaagggaa agacatgcaa cagagatccc gatcgctgag
      241 aggactatgc catgccggcc acacatacaa ttattcgaaa tcttagccgg atcacagtca
      301 ttcgctcgct aatgtgcgaa tcaacatggg tacacctgtg gccccttaat ccaaactgaa
      361 atgcgggact aaaaagtgag gctaatttca atgactagtt taaaaagatc catcctgagt
      421 gcggttgcgt tgacggtaat ctgcttagtc gctgccgcaa gaacgaatgc tgatccattg
      481 gtactcacca ttagcaaccc aaatcagacg gtgacgccgg gcacttggat tagctttacc
      541 ggaactctta cgaattccac tccgctagct ttccacatcg ggggacctgg aattttggcc
      601 cctacgagcc tcgtcaatat aggagacatc gatattccgt ctaacttcct gactgatccc
      661 ggtccgatgt ttacggtatc tggtggcgtt ttggacgtga ggatatctcc aacggccgca
      721 cccggctctt ataccgcctg gttggagtta ggcgggttct tctctgacgg ttccctcggg
      781 ttcgccatag gtgaagtcaa tattaatgtg atcactccgt cgagcgtgcc ggagcctgct
      841 tcaatgatcc tatttggcac ggggctgatt ggtgctgccg gcctcactcg ccgctatcaa
      901 aagcgctcac ttcggtctgt cactaacaaa ttcaaaacgt tgaagaagtc aattcctagc
      961 tgagttagga atgatcggtg aggctttgaa atggaaatca gagtgaaaga aatgaaagca
     1021 attgaggaga tcacgattcg cacccgcgct agcgcctacc gctttcgcct cgtcgatccg
     1081 gtgcaaggca aaggcgttct cactggaggt cgattaagcg aagagcagga ggcgatcttc
     1141 ggagaaacga tacgaccaac agacagtgcg acgcctttgt tggaccaact cgagcctgga
     1201 aacagagcgg tgtttctcgt gggcagcacc gagctaaaga caattaccac atcaccgatt
     1261 actg
//
LOCUS       DATCGC010001429         2496 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_286315, whole genome shotgun sequence.
ACCESSION   DATCGC010001429 DATCGC010000000
VERSION     DATCGC010001429.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2496)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2496)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2496
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_286315"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            386..1000
                     /locus_tag="VIJ87_13725"
     CDS             386..1000
                     /locus_tag="VIJ87_13725"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEY5445499.1"
                     /translation="MTRLLRYSLVGFCLAFLLVVTSSNALADNIVLTVDENGHGTLFN
                     PVSGTFVLPSSLAQDPGPGGLAGALTYNLLNPPGLVIGDVILTEGGVMGDLLRFNANG
                     TLVFYSLPGEGSLADIGFPSAFQTNLVSFAEGVDGTFLYTPLAGQPGFVAGAAFPVSY
                     RFVSDSVPEPTTIFLFGTGLAGMIVRKKRKARLDSNDRDSNPTT"
     gene            1358..2119
                     /locus_tag="VIJ87_13730"
     CDS             1358..2119
                     /locus_tag="VIJ87_13730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445500.1"
                     /translation="MKSLYTNLKINFPGKVIVTALLCEVALVAVYWFDVTTTGHHQTL
                     HALFDLDSEGNIPAWFSSSQLFCVAIAFWSCALRKRRSGRPSRLFFGLAGLAAVYASS
                     DETAQIHERITAMVGQRYVDWLPTYAAHNFLLVMVAIAVLLTICQFLADDLLLLWNNY
                     RRVSLLALIGITIALTGGMGVETLGYKLFHGSSESVWYKVEVTIEEFMEMFGATLVLV
                     SALNLRRHKAALSVLEFRRVGDSPFQLSSADQKVG"
     gene            complement(2144..>2496)
                     /locus_tag="VIJ87_13735"
     CDS             complement(2144..>2496)
                     /locus_tag="VIJ87_13735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445501.1"
                     /translation="DFDVDFKSSFVRKTDLNADGVDELLMTSGYMGQGTLTENAALVS
                     FQDGRFNIIEDFETVTEDSCASGFPGSTAKASVISYSAAAPGKMPKLQLDNYESACRN
                     TKRWKFVSTGKMQQ"
BASE COUNT          550 a          643 c          624 g          679 t
ORIGIN      
        1 gacaaggctg aacgatcgac actctgctct gaccccggga aaacaattgg tccatcggcg
       61 ctgattcggc aggataatgc ctcttccggt tcgcatgcat ggtttcctgc ttgtctgttg
      121 aagtcatcat tcatttgttc catttctaga aatcaagtcc cgggtttgga caatgtcgct
      181 tgcagtgcgc gacgtttcca agtcaactgc atgaatacct aagcaattct cacacagaga
      241 caatccagtc ttcgaggaat gcaagttgct gctggggcga ttgcccagtc cagcctttac
      301 cacgaggggt tttattaaag cttccaaatg agaagttggc ccatccctcg aaagcttttc
      361 aactaaccag ttttaggaga acttaatgac acgattactg cgttactccc tcgttggatt
      421 ctgtctagcg ttcttgctag tcgtcacctc tagcaacgca ctagcagaca acattgtgct
      481 cacagtggat gagaacgggc atggaaccct gttcaatccc gtaagcggga cctttgttct
      541 gccttcttca ctcgcacaag atccgggacc cggcggactc gctggagccc tgacatataa
      601 tcttctaaat ccaccgggac ttgtcatcgg cgacgttata ctcaccgaag gtggcgtgat
      661 gggggatctc ctccgcttca atgctaatgg tacattggtt ttctactctc tcccggggga
      721 aggttcgctt gctgacattg gcttcccatc ggcttttcag acgaacttgg tcagtttcgc
      781 cgagggagtc gatggaacat tcctttatac ccctttagcg ggccagcctg gttttgtcgc
      841 tggtgcggcc tttcccgtct cgtaccggtt cgttagtgac tcggtgcctg agccgaccac
      901 gattttcctt ttcggtaccg gcttagcggg tatgatcgtg agaaaaaaaa ggaaggcgag
      961 actcgattcc aacgaccgag actcaaaccc aactacatag actagacgag aattgactca
     1021 atcaaccacc cgcttcagta atatggagcg ggtggttttc gttgtgtcca attacccgtc
     1081 tagcaacttg cgcgctgcac cttgcgcttt tagtcgggtc ccaaccgtga agtgtcccga
     1141 gaatctattt ggctccgtct gaaattattt cgctgcatct atggtttgaa aacgttgggt
     1201 ggctgagccg tgctgattag ttgaaattga gtttgtttgc agagttcgcc ttatttggac
     1261 cagcgacaaa ctaaagttta tcggacaccc ctggcgcgtg aacacgattt gcattgagcc
     1321 tctcccgcga tttgaagtca gacgatagag gcgctcgatg aaatcacttt atacaaatct
     1381 caaaatcaac ttccccggta aagtcatcgt gactgcgttg ctgtgtgaag ttgccctggt
     1441 cgccgtctac tggttcgacg tcactaccac cgggcatcac caaacgctcc acgcgttgtt
     1501 tgacttggac agtgaaggga atatccctgc gtggttctcg tcctcccagc ttttctgcgt
     1561 tgcgatcgca ttctggagtt gcgcgctaag aaagagacga agtggtcggc cgtcaaggtt
     1621 gttctttggg ttagcaggtc tggctgccgt ttatgcgtcg tccgatgaga ccgctcagat
     1681 tcacgaacga atcacggcaa tggttggtca acgttacgtc gactggttac cgacctacgc
     1741 ggcgcacaac ttcctgctcg tgatggtggc gattgcggtt cttttgacca tttgccagtt
     1801 tcttgccgac gacttacttc tgctttggaa caactaccgg cgcgtgagcc tgcttgcatt
     1861 gataggaatc acgatagctt tgacaggcgg aatgggagta gagacgcttg gctacaaact
     1921 gtttcatgga agctcagaat cagtttggta caaagttgaa gtgaccatcg aggagtttat
     1981 ggaaatgttt ggcgctacgt tggtgctggt gtctgcgcta aacctgagac gccacaaagc
     2041 ggccttatcg gttttagagt tccgacgcgt cggagactca ccattccaat tgtccagcgc
     2101 tgatcaaaag gttggttaat cggcatgtaa gccctcgcca acgttattgc tgcatctttc
     2161 cggttgatac aaacttccag cgctttgtgt tccgacaggc cgactcgtaa ttgtccaact
     2221 gaagcttcgg cattttgccc ggcgctgctg cgctatagga aatgaccgaa gccttcgccg
     2281 tgctgcctgg aaaaccagat gcgcacgagt cttctgttac ggtttcgaaa tcctcgatga
     2341 tgttgaaacg gccgtcttga aaactaacca acgcggcgtt ttctgtcagt gttccctggc
     2401 ccatgtaacc acttgtcatc aacaactcgt cgacgccatc agcatttaga tctgtctttc
     2461 gcacaaagct gcttttgaaa tcgacgtcaa aatctg
//
LOCUS       DATCGC010001430         1117 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_286325, whole genome shotgun sequence.
ACCESSION   DATCGC010001430 DATCGC010000000
VERSION     DATCGC010001430.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1117
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_286325"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..869
                     /gene="uppP"
                     /locus_tag="VIJ87_13740"
     CDS             <1..869
                     /gene="uppP"
                     /locus_tag="VIJ87_13740"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: protein motif:HMM:NF014703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0050380 - undecaprenyl-diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0046677 - response to antibiotic [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="undecaprenyl-diphosphatase UppP"
                     /protein_id="HEY5445502.1"
                     /translation="AIILGLVQGLTEFIPVSSTAHLVFAARLVNLYGGMNKTLQAQQT
                     TATIAVIQLGTLLAVLIYFAPDIIKILRAFVGDHLALVSGSTKPGEPKLSHDAWLGWL
                     VIIGSLPVGIFGLLLKKVIEGTFTKNLWVIATMMIVVAALLAIAELVGKRARDMKQLG
                     IGDALAVGSAQVLALIPGSSRSGSTIMAGLFAGETRETAARFSFLLSIPAIAASGLLE
                     LKEAVTKIPAGSYGSLAVATIVSGIVGYASIWFLLRFLRTHSTGVFIIYRVIVGGLIL
                     AALSAGYFSANI"
BASE COUNT          240 a          269 c          300 g          308 t
ORIGIN      
        1 aagccattat ccttggcctc gtgcaggggc ttactgaatt cattcccgtt agttcgacgg
       61 cgcaccttgt gtttgcagcg cgcctggtaa atctctacgg tggaatgaac aaaactcttc
      121 aggctcaaca aacaacagca accattgccg tgattcagtt aggcactttg ctagcggtgt
      181 tgatatattt cgcccccgac atcattaaga tacttcgtgc ctttgttgga gatcatctcg
      241 cattagtgag tggatcgact aaacctggcg aaccgaaact ttcgcacgat gcgtggttgg
      301 gttggttggt gatcattgga tcgcttccgg ttggcatctt tggtctactg ctcaagaaag
      361 tgatcgaagg aacgttcacg aagaacctct gggttatcgc tacgatgatg attgtcgtgg
      421 cggcgctgct ggcgattgct gagttggttg gtaaacgagc tcgtgacatg aagcaacttg
      481 gcatcggcga tgcgctggca gttggctccg cacaagtcct ggctctcata cctggttcta
      541 gtcgctcagg ctcgaccatt atggccggcc tttttgctgg tgagacgcgt gagaccgcgg
      601 cgaggttttc gtttctcctt tcaattcctg ctatcgcggc aagcggactg ctggagttga
      661 aggaagcggt gactaagatc cctgcgggaa gctatgggtc gttagcagtt gcgacgatcg
      721 tgtcgggcat tgttgggtat gcgtcaatct ggtttctatt acggttcctg cgaactcact
      781 caacaggcgt gttcatcatc tatcgagtga ttgttggtgg actgattctg gcggcactat
      841 cggcagggta tttttcggcg aacatctgaa aatgtccgat atgctttagc ttgtcgttga
      901 catcaaaatg cgctggcatc actttgaccg cgcgttgttc ttctgcaaga ggctctaaag
      961 catatcggac accaaatctg caatcacaac tgttggcaat ccgcaatcaa ctcggtaaac
     1021 tactttcgcc tcgatcctct ccggcgccta caggctgccc gactcgatag ccaaatactt
     1081 aagggcggtg atttgaatga acgagaatga atctcga
//
LOCUS       DATCGC010001431         1060 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_486721, whole genome shotgun sequence.
ACCESSION   DATCGC010001431 DATCGC010000000
VERSION     DATCGC010001431.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1060)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1060)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1060
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_486721"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..917)
                     /locus_tag="VIJ87_13745"
     CDS             complement(<1..917)
                     /locus_tag="VIJ87_13745"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY5445503.1"
                     /translation="MKHLLPPKRLQGIEKSVIRQVFDRALPGSLNLGLGEPDLPTPDV
                     IRQAAIRVINDEQNGYTSHAGLPALREKIANEYPYLGGKPERVIVTAGSQEALYLALL
                     SIVDEGDEVLLPNPGFVAYPTIVRMAGGSSTFYQLPAENDFDFDLDSFRRALTPKTKA
                     VVCISPSNPTGRALSKTDLAGIAEALRDHDAYLISDEIYRELYYGDERPESASEFHER
                     TIVISGLSKSMSMTGWRLGWVAGDATVIQSMLVLHGYVTTCASAVSQKAALAAWSEEA
                     EAARAGFRKTFKARRDHLLGLIDTELGLRA"
BASE COUNT          245 a          312 c          253 g          250 t
ORIGIN      
        1 gcccgaagac ctaactcagt gtcgattagc ccaagcaagt gatcccgacg cgctttgaaa
       61 gttttacgga acccagctct cgccgcttca gcctcttcac tccaggccgc aagcgcagcc
      121 ttctgtgaaa ctgccgatgc gcacgttgtt acgtatccgt gcaagacaag cattgactga
      181 ataactgtcg cgtcacccgc aacccaacca agtcgccatc ccgtcatact catcgacttc
      241 gacaagccac ttatcacaat cgtgcgctcg tgaaactccg aagccgattc gggtcgctcg
      301 tctccatagt aaagctctcg ataaatctcg tcgctgatta gatacgcatc gtggtctcgc
      361 agggcctcag cgatacccgc tagatcagtc ttcgataaag cgcggcccgt cgggtttgaa
      421 ggactgatac aaacaacggc tttagttttg ggggttagcg ctcgtcggaa actatcgagg
      481 tcgaagtcaa aatcattctc tgccggcaac tggtagaacg tagaactacc gcccgccatc
      541 ctgacaattg ttggatacgc aacgaagccc ggattcggca agagaacttc atcgccctca
      601 tcaacgatgc tgagcagcgc gaggtacagc gcttcttgag agccagcagt tactattact
      661 cgctcgggct taccaccaag atacggatat tcattcgcga tcttttctcg cagtgccggt
      721 agacctgcgt gtgacgtata tccattttgc tcgtcgttga ttacccgaat tgccgcttgt
      781 cgaatcacat ctggagtggg taagtctggc tcacctaacc cgagattcaa acttcccggt
      841 aaagcgcggt cgaagacctg tcggatgaca ctcttctcga ttccttgcag tcgtttcggc
      901 ggcaacaggt gcttcaacgc aggtagtcct ctagttgcac ggccgcttcg gtcttttcgt
      961 cgcgatactt aacgatgatt gctgcgtaca aagaaagccc ccagcttaac cctggttcat
     1021 tctgaattgc gcgcgctccc ggaacaacaa cggcaccagc
//
LOCUS       DATCGC010001432         1745 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_418750, whole genome shotgun sequence.
ACCESSION   DATCGC010001432 DATCGC010000000
VERSION     DATCGC010001432.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1745)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1745)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1745
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_418750"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            57..>1745
                     /locus_tag="VIJ87_13750"
     CDS             57..>1745
                     /locus_tag="VIJ87_13750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445504.1"
                     /translation="MYNGKNKTFFFFSYEQIADSRPRFDANNIWVPTDALKNGDFSAY
                     ASSIKIYDPLTGTFSGGTVTNRTQFTDNKIPANRISPVAKAIMALMGSPKQASPTGLL
                     NNNIRDSTLAELLNPPYRNYSIRIDQSIGEKDKLFGRYSAYNRKSSYNNYTASDYVGD
                     RFLFISKQAVVDDVHTFNATNVLNLRYGFNRFIRGSDAPEGQYGIDLTTLGFPASYNN
                     LIGEGIRRIPRFDFNCTGCTGAAIGNGHTNEFRPVSSHFATAVWNRSQGIHSLRFGGE
                     MRIYREDDSFKSNQQSGQFIFDNTYTRIGSASSNDVEGLQGFASFLLGYPTTMQIVRA
                     SDYSEYSKTWGFFVQDDLRLTRKLTVNLGLRWEFESALKERQNKSVSGFDLDYTQPFN
                     AQAQTNYTAILNNLAATNLLKTLNVTAISSKGGLLFAGKDTGSSLYNTPMNGFLPRLG
                     FAYAWNDKTVFRGGFGLYQGFLGERRGDVIQPGYTQTTTQALGTGPNGAPLPFLITNP
                     FPSGITEPSGNALGRQTALGQTVSFFNQDPKVARQTRFSFGVQRELGGGWTFEAV"
BASE COUNT          433 a          464 c          431 g          417 t
ORIGIN      
        1 acacgttttc aaatcgacct ggttttagta tcggtggtcc aatctggatc ccgaaggtgt
       61 ataacggaaa gaacaagacc ttcttcttct tttcctatga gcagatagcc gactcccgac
      121 cgcgcttcga tgcgaataac atttgggtgc cgaccgatgc tctgaagaac ggcgatttct
      181 cggcgtacgc cagcagtatc aagatctatg atcctctgac gggaacattt tcgggcggaa
      241 cagtcactaa tcgtacgcag ttcacagata acaagattcc cgctaacaga atcagccccg
      301 tcgcaaaagc gatcatggcc ctcatgggtt cgccaaaaca agcatcaccg accggcttgc
      361 tcaataacaa catcagagac tcgacactag ctgagctcct taatcctccg tatcgaaact
      421 actcaattcg tatcgaccag agcatcggcg aaaaagataa gctgttcgga cgttatagcg
      481 catacaatcg taagagcagc tacaacaact acacggcttc agactatgtt ggggatcggt
      541 tccttttcat ctccaagcag gcggtcgtcg acgatgttca cacgttcaac gccacgaatg
      601 tgctgaatct aaggtatggg ttcaaccgct ttatccgtgg ttccgatgct cctgaaggac
      661 aatacggaat cgacttaact acgctgggct tcccggcttc ttacaacaac ctgatcggtg
      721 aaggcattcg ccgcattccg cgcttcgatt ttaactgcac gggatgtacg ggtgcggcaa
      781 ttggcaatgg tcacactaac gagttcagac ccgtgagtag ccactttgca accgcagtgt
      841 ggaaccgttc tcaaggaatc cactcgctac gtttcggcgg cgagatgcgt atctatcgtg
      901 aggacgatag cttcaagagc aatcaacagt cgggtcagtt catcttcgat aacacctaca
      961 cgcgaattgg cagtgcgagt agcaatgacg ttgaaggcct ccagggcttt gcttcattct
     1021 tgcttggcta tcccaccacg atgcagatcg tacgcgcctc agattactcg gagtactcca
     1081 agacgtgggg attctttgtc caggacgatc tgcgtctgac caggaagttg acggttaacc
     1141 ttggcttgcg ctgggaattt gagtcggctc taaaggaacg tcagaataag agcgtttcag
     1201 ggttcgattt ggactacaca cagccattta acgcccaggc tcaaactaac tacacggcga
     1261 tcctgaacaa tctagctgct accaatttac tcaagacgct taacgtaaca gcgattagtt
     1321 ccaaaggcgg tctgttgttt gccggtaagg acactggtag tagcctctac aacacgccca
     1381 tgaacggctt tttgccacgt ctaggttttg cctacgcatg gaatgacaag acagtatttc
     1441 gtggtggctt cgggttgtac cagggatttc ttggtgaacg acgtggagac gtcattcaac
     1501 caggttacac ccaaaccacg acccaagctt tgggcactgg tcccaacggt gcgccgttac
     1561 cgttcctgat caccaacccg ttcccaagtg gcatcaccga gccgagtggc aatgccttag
     1621 gccggcaaac cgctttgggc caaacggttt cattcttcaa ccaggatccc aaggtggcac
     1681 gtcagaccag attttcgttt ggcgttcagc gagaactcgg gggcggttgg acgttcgaag
     1741 ccgtt
//
LOCUS       DATCGC010001433         2092 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_286356, whole genome shotgun sequence.
ACCESSION   DATCGC010001433 DATCGC010000000
VERSION     DATCGC010001433.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2092
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_286356"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(67..1449)
                     /locus_tag="VIJ87_13755"
     CDS             complement(67..1449)
                     /locus_tag="VIJ87_13755"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013682.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006486 - protein glycosylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 47 protein"
                     /protein_id="HEY5445505.1"
                     /translation="MKIIRVSLLCIVTSLPICAQQPNRVKLAHEVKAEFLHAWNGYKE
                     YAWGHDDLKPLSKTYHDWYAEPLLMTPVDALDTMMLMGLKDEFATTHHYVVDHLSFDK
                     DISVQNFEVTIRLLGGLLTNYQLTGDKRLLDLAEDLGNRLLPVFDSPTGMPYRYVNLR
                     TKAVRDANSNPAETGTLLLEFGTLSKLTGKPVFYDKAKRAVVETFRHRSSIGLVGEWI
                     NVETGQWTNTDSHISGAIDSYYEYLLKCSLLFDDAECKSMWDASIVAINKYLKDEVSS
                     SSTDRPPHQVWYGHADMNTGQRKATTYGALDAFFPAVLAMSGDLKKAKALQESSFAMW
                     RRMGIEPEEYNYREDKITAPGYPLRPEIIESTYYLYHYTKDPKYLQMGEQLWRDFVKQ
                     CRTEEGYAALKSVVTKEKSDSMQSFLFAETFKYFYLLFAPPRVLDFDKVIFNTEAHPL
                     IKNWQPKNVQ"
     gene            complement(1574..>2092)
                     /locus_tag="VIJ87_13760"
     CDS             complement(1574..>2092)
                     /locus_tag="VIJ87_13760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445506.1"
                     /translation="NREKLIEILQLAYSGELAAAYAYRGHWHSVSDEDERARIKTIEE
                     EEWHHRRLVGEMLAGFDAGPRRQREIRATIIGRSLALLCHLSIWFVPMYGAGKLESRN
                     IVEYETAARYARDCGRNDLVDCLLTMAEVEWEHERYFRERVQMSRWIKFLKLWPKPPA
                     KETIRQSMADKL"
BASE COUNT          481 a          533 c          523 g          555 t
ORIGIN      
        1 cttgccaact tcttcttaat ctcatccctt ttccgccggt ctgacttttg cgagagacta
       61 tgaagcttat tgaacattct taggctgcca gtttttgatg agtggatgag cttcggtgtt
      121 gaagatcact ttgtcgaagt cgagtactcg aggtggggcg aaaagcaagt agaagtattt
      181 gaacgtttcg gcaaaaagaa aactctgcat cgaatcagac ttctctttgg tgacgacgct
      241 cttgagcgca gcgtaacctt cttcagtgcg acattgcttc acgaaatcgc gccagagttg
      301 ttcacccatc tgaaggtact ttggatcttt cgtgtagtga taaaggtagt aggtagactc
      361 tatgatctcc gggcgcagcg gataaccagg cgccgtaatc ttatcttccc gatagttgta
      421 ctcttccggt tcgataccca tccgtctcca catcgcgaat gacgattcct gaagcgcttt
      481 tgcttttttc aaatcgcccg acatcgctaa caccgcggga aagaacgcat cgagggcgcc
      541 gtaggtagtc gctttgcgtt ggccggtgtt catgtccgcg tggccgtacc agacttgatg
      601 cggtggtcgg tcagtcgagc tgcttgaaac ttcatccttc agatacttgt ttatcgcgac
      661 aatgctcgcg tcccacatgc tcttgcactc ggcatcatca aacaggagcg aacacttcaa
      721 gagatattca tagtaactgt ctatcgcacc actaatgtga ctatcggtat tcgtccactg
      781 gccagtctcg acatttatcc actcaccaac caggccaatg gaagaacgat ggcgaaaagt
      841 ttcaaccacc gcgcgcttcg ccttgtcgta aaagacgggt ttgcctgtca gcttacttaa
      901 cgttccaaac tcaaggagca gggttcccgt ctcggccgga ttgctgttcg cgtcacgtac
      961 agccttcgtc ctgagattga cgtagcgata cggcataccc gttggagaat caaagacggg
     1021 taatagtcga ttgcccagat cttcggccaa gtccaacaat cgtttgtcgc cggtgagttg
     1081 gtagttggtg agtagtccgc ctaggaggcg aatcgttact tcaaagtttt gaacagagat
     1141 gtctttgtcg aatgaaagat gatcgacgac gtagtgatgc gttgtggcga actcgtcctt
     1201 cagtcccatc agcatcatcg tgtcgagcgc gtcgaccggc gtcattagaa gcggctcggc
     1261 gtaccaatcg tgataggttt ttgaaagtgg ttttagatcg tcatgtcccc aagcgtattc
     1321 cttgtagccg ttccacgcat ggagaaattc tgctttgact tcgtgagcga gttttacgcg
     1381 attgggttgt tgcgcgcaga tgggaaggga tgtgacgatg cagagtaacg agacacgaat
     1441 gattttcata gaggtaccaa aaaggtcttt ctctgtgcag tctctgtgtc ctctgtgtct
     1501 ctgtggtgat ctttagcgac catagttcaa ccgcagagac acagagggca cagaggaggc
     1561 acagagaaga acgttaaagc ttatcggcca tcgattgtct gatcgtttct tttgccggag
     1621 gcttgggcca gagtttcaag aactttatcc aacgcgacat ctggactcgc tcccgaaagt
     1681 atcgttcgtg ttcccattca acctcggcca tcgttaacag gcaatcaacc aagtcattac
     1741 gtccacagtc gcgtgcgtac cgagccgcgg tctcatactc gacaatgttt cggctctcga
     1801 gttttccggc tccatacatt ggaacaaacc agatgcttaa atggcacaac aacgccaggg
     1861 aacggccaat aatggtcgcc ctgatctcac gttgcctgcg tggtccagcg tcgaagccgg
     1921 cgagcatttc gccaacgagt cgacgatgat gccactcttc ttcctcgatc gtcttaatcc
     1981 ttgcacgttc atcttcgtcg cttaccgaat gccagtgacc tcgataggca tacgctgctg
     2041 ccaactcacc cgagtaagcg agttgaagga tctcgatcaa cttttcgcga tt
//
LOCUS       DATCGC010001434         1539 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_353585, whole genome shotgun sequence.
ACCESSION   DATCGC010001434 DATCGC010000000
VERSION     DATCGC010001434.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1539
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_353585"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1539)
                     /locus_tag="VIJ87_13765"
     CDS             complement(<1..>1539)
                     /locus_tag="VIJ87_13765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445507.1"
                     /translation="SLLILFLAAMFFGGTTFAQTGFTGIFGGGPTYINATNNITELKN
                     SGLTEVIVWSVEVKTNGDLNLNGEFPLTSNGVYIGDQLHPDFAANMSALKEGTVKRIT
                     FSIGSSNFGDWQDIRDLVNSQGTGEDSILYKDFAALKAAIPALDAIDFDDENSFDSST
                     TIQFGVMLGQLGYKVNPDAFNNSSYWKNVVAQINTQLPGTVDGVHLQAYAGGSGNNPC
                     VGWDFGDVPVWPGLWDLDDTPSEVQSVMSGWNTQCGINGGFMWLYDDFVGNGLAAQYA
                     SAINNAVSSTGFTLSGPSNVFLNQNSSAIAQITITPLNGFHDKVTLSLSTLPKGVTAT
                     VEGHGGKRKLTFQASPSARTGFTSVTVTGTSGDITQTFAFTLAVSAAVGGNGTGTQVD
                     LSSEFNLYGIYSDGTSYATGGIDGAGYSYSANLLGTSRVLSKTLFDFGPADQLGAVGC
                     NGQVIALPQGQYSGLMLVGTGVQGNQTSQTLTVNYTDGSHSQFVQSFSDWFTPQKYPG
                     ESECV"
BASE COUNT          380 a          409 c          385 g          365 t
ORIGIN      
        1 acgcattcgg actcgcccgg gtacttttgc ggagtaaacc aatcactgaa gctctgaaca
       61 aattgtgaat ggcttccgtc cgtgtagtta accgtaagag tttgcgatgt ttgattcccc
      121 tgcaccccgg ttcccaccag cataagcccg gagtattgac cctgtggaag agctattacc
      181 tgtccattac agccgactgc accaagttga tcggcgggtc caaaatcaaa aagcgtcttg
      241 cttaggactc gcgaagtgcc aaggaggttc gctgagtacg aatagcccgc gccgtcgata
      301 cctccagtcg cataagaggt gccgtcgcta tagataccgt agagattaaa ctccgacgac
      361 agatccacct gtgtgcccgt tccgtttccg ccaacggcgg cgctcacggc cagtgtaaat
      421 gcgaaggttt gcgtgatgtc accagaagtg ccagtgacgg tcacggaagt gaatccggtc
      481 cgggcggaag gactggcttg aaaggtcagc ttccgcttcc ccccgtgtcc ttcgacggtt
      541 gccgtaactc ccttgggtag agttgataga cttaaagtga ctttgtcatg gaaaccgttg
      601 agcggcgtaa ttgtaatctg ggcaatcgcg gatgaattct ggttcaaaaa cacattgctc
      661 ggacctgaga gcgtaaagcc agtgctgctg accgcgttgt taatcgcgct cgcgtattgc
      721 gcggcgagac cattgccaac aaagtcgtca tagagccaca taaacccgcc gttgataccg
      781 cactgagtgt tccagccact catgacgctt tgcacctcgc taggtgtgtc atccaagtcc
      841 cacaaaccgg gccagaccgg gacatcgcca aaatcccatc cgacgcatgg attgttcccg
      901 ctgccgcccg cgtaggcctg aagatgaacc ccgtctacgg ttccaggaag ctgagtgttt
      961 atctgggcaa caacattctt ccagtaacta ctgttattaa aagcgtccgg gtttaccttg
     1021 taacccagtt gccccagcat gactccaaac tgaattgtcg tggaggagtc aaagctattt
     1081 tcatcatcaa aatcgatcgc atccaaggcc gggatagcag ctttcaaagc cgcaaaatcc
     1141 ttatagagaa tgctgtcctc gcctgtgccc tgagagttaa caaggtctct aatgtcctgc
     1201 cagtcaccga aattagatga gccaatgctg aatgtaattc ttttgactgt cccttctttc
     1261 aacgccgaca tgttcgcggc aaagtcagga tgcagttggt cgccgatata aactccgttg
     1321 gaggtcaaag gaaactctcc gttgaggttc aagtcaccgt tggtcttgac ctcgacactc
     1381 cagacgatga cttcagtcaa tcccgaattt tttagttcag taatgttgtt agtagcgttg
     1441 atgtaagtcg gtcctccgcc gaaaattccg gtaaatccgg tctgcgcaaa ggtagttccg
     1501 ccaaaaaaca tggcggccag aaacaagata agaagagag
//
LOCUS       DATCGC010001435         1612 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_321839, whole genome shotgun sequence.
ACCESSION   DATCGC010001435 DATCGC010000000
VERSION     DATCGC010001435.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1612)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1612)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1612
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_321839"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..649
                     /locus_tag="VIJ87_13770"
     rRNA            <1..649
                     /locus_tag="VIJ87_13770"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            857..933
                     /locus_tag="VIJ87_13775"
     tRNA            857..933
                     /locus_tag="VIJ87_13775"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:891..893,aa:Ile,seq:gat)
     gene            955..1030
                     /locus_tag="VIJ87_13780"
     tRNA            955..1030
                     /locus_tag="VIJ87_13780"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:988..990,aa:Ala,seq:tgc)
     gene            1173..>1612
                     /locus_tag="VIJ87_13785"
     rRNA            1173..>1612
                     /locus_tag="VIJ87_13785"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          391 a          401 c          481 g          339 t
ORIGIN      
        1 gcaaggctga aactcaaagg aattgacggg ggcccgcaca agcggtggag tatgtggttt
       61 aattcgacgc aacgcgaaga accttacctg ggctcgaacg gctagtgaca ggagatgaaa
      121 gtttcttttc ccgcaaggga cgctagtcga ggtgctgcat ggctgtcgtc agctcgtgtc
      181 gtgagatgtt gggttaagtc ccgcaacgag cgcaaccctt gtccgctgtt gccatcacgt
      241 tatggtgggc actctgcgga gactgccggt gataaaccgg aggaaggtgg ggatgacgtc
      301 aagtcagcat ggcctttatg tctggggcta cacacgtgct acaatggccg gtacaaaccg
      361 tcgcgatacc gcaaggtgga gctaatcgga gaaagccggt ctcagttcgg attgcaggct
      421 gcaactcgcc tgcatgaagt tggaatcgct agtaatcgcg gatcagcacg ccgcggtgaa
      481 tacgttcccg ggccttgtac acaccgcccg tcacatcacg aaagctggtt gtactagaag
      541 tcaccgagct aacccgcaag ggaggcaagt gcctaaggta tggtcagtga ttggggtgaa
      601 gtcgtaacaa ggtagctgta ggagaacctg tggctggatc acctcctttc tagagaacag
      661 cttgccggta aacgggaaac cggatactgg taactggact tgaaagatcg atctggtact
      721 cgggtcggcc gggtcttcgg acctggcaga cagcggattg ctgcacgcac gttctatcta
      781 gttttgagag aaccggagcg gagagattct ccgaaccgag ctctttgaaa ctggtgtccg
      841 cgtctctagt aggtttgggc ctgtagctca gctggttaga gcacacgctt gataagcgtg
      901 gggtcagtag ttcaaatcta ctcaggccca ccatttccaa agaccgcact tttcggggaa
      961 ttagctcagc tgggagagcg cctggtttgc aaccaggagg tcaccggttc gagcccggta
     1021 ttctccacca attcggctct ttgacaattg aatatcctgc aaacggtagt tttttccgac
     1081 cacaaaaaac acacacgcag tgtgccgaga aggattcaca tcgccgggcg acatgcaaac
     1141 gcctggaccc cggtgtgagt cctcaattca atggtcaagc tactaagggc gtacggtgaa
     1201 tgccttggcg acaggtgtcg atgaaggacg tggtaagctg cgaaaagctc cggtgagccg
     1261 caaacaggct ttgacccggg gatatccgaa tggggaaacc cacgcatgtt catccatgcg
     1321 tatcctggtc tgaatccata ggaccagtga aggcaaccga gggaagtgaa ccatctcagt
     1381 acctcgagga acagaaaaca acagtgattc cgctagtagc ggcgagcgaa cgcggacata
     1441 gcccaaaccg gtgtgcttgc acatcggggt tgtagggccc gactgccttt gatggcagcg
     1501 agttaccaag cagttaatta gttgaacgat ctggaacgat cggccataga cggtgacagc
     1561 ccggtaaacg acagtcaact gcctcgcgtt gggttcctga gtaccgcggg ac
//
LOCUS       DATCGC010001436         1264 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_119695, whole genome shotgun sequence.
ACCESSION   DATCGC010001436 DATCGC010000000
VERSION     DATCGC010001436.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1264)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1264)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1264
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119695"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            231..>1264
                     /locus_tag="VIJ87_13790"
     CDS             231..>1264
                     /locus_tag="VIJ87_13790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY5445508.1"
                     /translation="MRPCIVRAVIAAIMLVGSSASLHSQTQLKTKPAKPVGSVSGRVT
                     IKGKGASGIAVALRRPEMSSLQEMGPRAVTDQDGNYRITNVSAGAYEVVPSTQVYVIA
                     GSENSPRRSVVIGENEELENINFSMVKGGVITGRITDADGRPAIQVSVRLMRMQQADP
                     RAAQPNPTWYNPTTVLTDDRGIYRAFGLIAGKYTVAIGRASGNSFNFPGRVSYKEVFY
                     PDTSDSSKATVLEVSEGSEATNIDITLGRPMEVFTATGRVVEGEKGQPIPNISFTLQR
                     LVGDRPEFMSFSNSNAQGEFTVEGLLPGKYATYLLPEANSEWRAENTSFDVIDSDVSG
                     VTIRLVRGSS"
BASE COUNT          338 a          310 c          324 g          292 t
ORIGIN      
        1 ccgtaccaag accggaaaag actcattggt catttctcat tttccatttt ttattttcca
       61 tttggaagaa aggtttcagg cgtcaacctt tccaaatggc aaatcatgtc aaaatcaaaa
      121 tgggaaatga ccaatgacaa atcgtgccct ttcaatgacg acaaacacgt gcccgtacgc
      181 tatgatcccg cgcactgaac ctcgccacct tacgacggag agaaaccttt atgaggcctt
      241 gtatcgttcg agcagtaatc gctgcgatca tgctcgtcgg gtcgtcagca tcccttcact
      301 cgcaaactca acttaagacc aaaccagcca agcctgtcgg gtcagtttca ggtcgcgtta
      361 cgatcaaagg aaagggcgca tctggtatcg ctgtagcttt gcgtcgacct gaaatgagtt
      421 cgctgcagga gatgggccct cgagccgtca cggatcagga tggtaactac cgaatcacaa
      481 acgtcagtgc cggagcttac gaagttgttc cgtcaactca agtctacgta attgccggta
      541 gcgaaaattc tccgaggcgt agcgtcgtca taggtgaaaa cgaagagctt gagaacatca
      601 acttttcaat ggtcaaaggt ggtgtgatca cggggcgaat caccgatgcc gatggacggc
      661 cagcgattca ggtgtcagtc cggttaatgc ggatgcaaca ggcagatcct cgagctgctc
      721 aaccgaaccc aacgtggtac aacccaacga cagttctgac ggacgatcgt ggaatctatc
      781 gagcgttcgg attgatagct gggaaataca cagtggccat agggcgggcc agcggaaact
      841 cgttcaactt tcccggacgt gtttcctaca aagaagtttt ctatccggac acaagcgaca
      901 gcagtaaggc gacggtgctt gaggtaagtg aaggaagtga agcaacgaac atcgacataa
      961 cactaggccg accgatggaa gtctttacgg ccacaggtcg tgtggtagag ggagaaaaag
     1021 gacaaccaat tccgaatatc tcgtttacgt tgcaacgact agtcggcgac cgtcccgaat
     1081 tcatgtcgtt tagtaacagt aacgctcaag gtgagttcac cgttgaaggt ctattgcctg
     1141 gtaagtacgc aacgtacctg ttacctgagg ccaattcgga atggcgtgct gaaaatactt
     1201 cgttcgacgt aatcgactcc gacgtttcgg gtgtcactat tcgacttgtt aggggttcct
     1261 cgat
//
LOCUS       DATCGC010001437         2609 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_321846, whole genome shotgun sequence.
ACCESSION   DATCGC010001437 DATCGC010000000
VERSION     DATCGC010001437.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2609)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2609)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2609
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_321846"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1537
                     /locus_tag="VIJ87_13795"
     CDS             <1..1537
                     /locus_tag="VIJ87_13795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445509.1"
                     /translation="RFSQRLMVNLGLRWEPALPWQEIKGRQEQFRLPDLIANVRSTQF
                     PNAPPGTFFPGDAGVPKDGVRPNYMGFAPRVGFAYDVFGDSKTSVRGGFGIFYDTRIM
                     GAINNRFADLTPFSPQFVLNTGVVNPGTFNDPLCTLPATQTLQNCTNQAAAYPFPFTY
                     PPAKNISFGLGTFVLSWDPVNKYQTPTVYNWNLSVERQLPENVLVRAAYVGSHSSHLM
                     ETLNLNPRPVGTTTATPTRLNAIAGAPLFSTVQQDLQDINSNYNSMQLSAEKRLSRGF
                     TVLASYTWSKSLDDLPPRAGVGGFDTSSAKPWDDPTRHSFDYGPSEFDHTHKFVASWI
                     WQLPSLKDENSVVRGFLGDWQLSGLMQAQSGRPMSVTQGSDISGTGIGQDRGSFTGAD
                     PYTSGACAGVVACKMWLNPAAFKAASDPSIKNTFGNIGKGSLRFPGFYQWDMGLSKIV
                     SITERYKLQLRGEFFNIFNQVNFLDDEGTVNNFSTVSNGNFGRLRTAKDPRIGQIALK
                     FIF"
     gene            1739..>2609
                     /locus_tag="VIJ87_13800"
     CDS             1739..>2609
                     /locus_tag="VIJ87_13800"
                     /inference="COORDINATES: protein motif:HMM:NF020039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HEY5445510.1"
                     /translation="METREPYAKDCTKLGRRSFIGGTIATTLAVTALGQNRDYSQSAP
                     PVRYPDRDIVVLDPRFAKYKIGNAAIQRLYTGMLWAEGPAWNGVGRYLVWSDIPNDVQ
                     HRFLAEDNHVSIFRNPSNNSNGNTFDFEGRQLSCEHGTRRVVRYENNGNVTVLADKWQ
                     GKPFNAPNDIVVHPDGGIWFTDPGYGSMGNYEGHKGELQIKEAVYRLDPKTASLEIVT
                     NDLKKPNGLCFSHDYKKLYIADTGVSPGTITSYDLVDGKKLQNARMFVTMSLKTKDGE
                     LKGGADGIRSDVDG"
BASE COUNT          674 a          680 c          648 g          607 t
ORIGIN      
        1 cagattcagc caacgtctga tggtgaacct tggattgcgt tgggaaccgg cgttgccatg
       61 gcaagaaatc aaaggccgac aggaacaatt ccgcctgcct gatctgattg caaatgtgcg
      121 ctcaacgcag tttccaaatg cgcctccggg aacgttcttc ccgggcgacg ccggcgtgcc
      181 taaagacggt gtcaggccaa attatatggg tttcgctccc cgcgttggtt ttgcgtatga
      241 cgtcttcggt gacagtaaaa caagtgtgcg tggtggcttc ggaattttct acgatacgag
      301 aattatgggc gccatcaaca atcgtttcgc agacttgacc cctttcagcc cacagtttgt
      361 tctcaacacc ggtgtggtca acccgggaac ctttaacgat ccactgtgta cactaccggc
      421 tacgcagaca ctgcagaatt gtacaaatca ggctgcggcg tatccgttcc cgttcactta
      481 tccaccggcc aaaaacatta gctttggctt gggaaccttc gtgctcagtt gggatcccgt
      541 caacaaatac cagacgccaa cggtgtacaa ctggaatctg tcagtcgagc gacaacttcc
      601 cgaaaacgta ctcgttcgtg cggcgtatgt tggctcacac agcagtcacc tgatggagac
      661 acttaacctg aatccgcgac cggttggaac aactactgca acaccaactc gcctcaatgc
      721 gattgccggt gcgccgttgt ttagtaccgt ccagcaagat ctccaggaca tcaactctaa
      781 ttacaattcg atgcagcttt ccgctgagaa acgattgtca cgaggcttca cggtgctcgc
      841 tagttacacg tggtcaaaga gccttgatga tcttccgcct cgtgctggcg tcggcggctt
      901 cgatacgagc tccgcaaagc catgggatga cccgacccga catagcttcg attatggtcc
      961 atctgaattt gatcacacgc acaagttcgt cgcttcatgg atttggcaac ttccatcact
     1021 aaaggatgaa aactctgtcg tcagaggatt cctcggagat tggcagttaa gtggtctaat
     1081 gcaggcacaa agcggtcgcc caatgagtgt cactcagggg tcagatatct ccggaaccgg
     1141 aatcggccag gatcgtggct cgtttaccgg ggcggatccg tatacatccg gtgcgtgcgc
     1201 aggtgtggtc gcgtgtaaga tgtggcttaa ccccgcagca tttaaagcag cgagcgaccc
     1261 ctcaattaag aacacgttcg gtaacatcgg aaaaggcagc ctgcgattcc ccggcttcta
     1321 ccaatgggac atgggcctgt cgaagatcgt ctcgataact gagcgataca aactgcaact
     1381 gcgtggtgag ttcttcaaca tcttcaacca ggttaacttc ctcgatgacg aaggcactgt
     1441 taataacttc tcgactgtta gcaacggaaa ctttggcaga cttcgcaccg caaaggatcc
     1501 acgcattggt caaatcgcat tgaagttcat cttttagcta atcggccagt aaccgaaagc
     1561 tattctcaag gcgccctcca agcggatggc gccttgaata atttgttttg caattctgtc
     1621 tattcggttt aagctaacgg ccttatctgt acaagcagtt tgctcctacc aaagtcccaa
     1681 ttgttctaac acctaattaa tttagctaag ctggcgcctt agctgaggag gcaaaaattt
     1741 ggaaacgcgt gaaccttatg ccaaagactg tacaaaactc ggtcgtcgca gctttatcgg
     1801 tggaacaata gcaaccacct tagccgtaac cgcgctgggt caaaatcgag actacagtca
     1861 aagcgctcct cccgttcgct atcctgatcg cgacatcgtt gtcctcgatc cacgctttgc
     1921 taaatacaag attgggaatg ctgcgattca acgtctctac accggaatgt tgtgggcgga
     1981 aggaccagca tggaacggag ttgggagata cctggtctgg agtgatattc ccaacgacgt
     2041 tcagcatcgc ttcctggctg aagataatca cgtcagcatc tttaggaatc catcaaacaa
     2101 cagcaacggc aacacgttcg atttcgaagg ccgccaactc tcgtgtgaac acgggacgag
     2161 acgagtggtc agatatgaaa acaatggaaa cgttactgtg ctggctgaca agtggcaggg
     2221 caaaccgttc aacgcaccaa acgatattgt cgtgcatccc gacggtggaa tctggtttac
     2281 cgaccccggc tacggcagca tgggaaacta cgaaggccac aaaggcgaac ttcaaatcaa
     2341 ggaagcagtg taccgactgg atccaaagac cgcttcgctg gaaattgtta ccaacgatct
     2401 aaagaaacca aacggtcttt gcttttcgca tgattacaaa aaactttata tagctgacac
     2461 aggcgtctcg cctgggacca tcacctcgta tgacctggtg gatggaaaga aacttcagaa
     2521 cgcccgtatg tttgtgacga tgagtttgaa aacgaaggac ggcgagttaa aaggcggagc
     2581 agatggcatt cgctccgacg tcgacggca
//
LOCUS       DATCGC010001438         2313 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_353665, whole genome shotgun sequence.
ACCESSION   DATCGC010001438 DATCGC010000000
VERSION     DATCGC010001438.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2313)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2313)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2313
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_353665"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1021
                     /locus_tag="VIJ87_13805"
     CDS             <1..1021
                     /locus_tag="VIJ87_13805"
                     /inference="COORDINATES: protein motif:HMM:NF036531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445511.1"
                     /translation="QRGAQSSDPSVIGTAHWGEDGIFWRWSDGGVEATSFVLRALLAI
                     DPKNKLVEPVTNWLIKNRRGAQWSNTRDTAIVVLTLNEYLRASGEIQPAMSYDLLVNG
                     TRVASKQLTADDALSAPSRFAIPRELVRDGQNEITIQRKSGSGPIYFAAEAEFFSLEE
                     PLKPAGNEIFVRRQYFKLINHPTLLKGFVSERVPLNDGETVKSGERVEVVLTIEAKNN
                     YEYLLFEDLKPGGLEAVEVRSGDSVYVRELKSGALTDGNTATMNFKSTSDFTGRTRWV
                     YQELRDRKVALFIDHLPQGVWQLSYEMRAEAPGAFHALPVLGHAMYVPEIRTNGTETR
                     IKVVD"
     gene            complement(1188..1778)
                     /locus_tag="VIJ87_13810"
     CDS             complement(1188..1778)
                     /locus_tag="VIJ87_13810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445512.1"
                     /translation="MQIIRTIPILLLLFVCSGICVGQQPGPEFWRKLTCQPFEPRTTL
                     EALEMKRETVVIRGFSQITTVDVRGVRIDAVEMRVLGGPGRAKGVVVALRESADRIED
                     NRAFVDYEELDPLLRAIDSLAAVDENSTKLVGFEAHYHTRGDLELKVFRQTQRLTAVT
                     IQTGICTRATESLSLDELAKVRAMILEAKTRLDELR"
     gene            1993..>2313
                     /locus_tag="VIJ87_13815"
     CDS             1993..>2313
                     /locus_tag="VIJ87_13815"
                     /inference="COORDINATES: protein motif:HMM:NF014664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HEY5445513.1"
                     /translation="MSDHYHDPNDLGLLKEMRKLAQVDFDAWLNLNNIVGREGGALPP
                     KIRELIAVGVACTTQCPYCIEVHAKAAKAAGATREELVETAFVAAALRAGGAATHGAM
                     ALKFF"
BASE COUNT          571 a          536 c          637 g          569 t
ORIGIN      
        1 tcagcgtggt gctcagtcgt ccgatccttc agtcatcgga actgcccact ggggtgaaga
       61 cgggatcttc tggcgttggt ccgatggcgg agtcgaagct acatcgtttg tgctccgtgc
      121 tttgttggcc atcgatccca agaacaagtt ggttgagccg gtcacaaatt ggctgataaa
      181 gaatcgacgg ggcgctcagt ggagcaatac tcgcgatacg gcaatcgttg ttttgacgct
      241 gaatgagtat cttcgagcca gcggagagat tcagccggcg atgagttatg acctgctagt
      301 aaacggaact cgcgtggcat cgaagcaatt gaccgcagat gatgctttaa gtgcgccgag
      361 tcggtttgcg attccacgcg agttagtgcg tgacggtcag aacgagataa cgatccagcg
      421 gaagagtggc tcgggaccga tttactttgc ggcagaagct gagttcttta gtctggaaga
      481 accattgaag ccggcgggca atgagatctt tgtgcgtcgt cagtatttca aactcataaa
      541 tcatcctaca ctactcaagg gatttgtttc ggagcgtgtg ccgcttaacg acggtgaaac
      601 cgtgaagagt ggtgagcgag tggaagtggt actgactatc gaagcaaaga acaactatga
      661 gtacctgttg tttgaagatc taaaacccgg tggacttgag gcggttgaag ttcgcagtgg
      721 cgatagtgtt tacgttcgtg aattgaagtc gggcgcgctg accgatggga atactgcgac
      781 gatgaatttc aaatcaacaa gtgatttcac gggacggacg cgttgggtgt atcaggaact
      841 ccgcgatcga aaggtcgcgc tgttcatcga tcatttgccg cagggtgttt ggcagttgag
      901 ttatgaaatg cgcgccgaag ctccaggcgc gtttcatgca ctgccagtgt tgggacatgc
      961 gatgtacgtc cctgagatta gaaccaacgg caccgaaact agaatcaagg tagttgatta
     1021 gtgtccgata tgctttagct tgtcgctgag gtaacaagaa gtcggccaca gataagaaca
     1081 gatgaaacgg atcaagaaga ggcattcttc tgatcagtct cattggtttt tatctgtggc
     1141 cgactttttt gctaccttag cgacaagcta aagcatatcg gacatgctta acgcagttca
     1201 tccaatcgcg ttttcgcttc tagaatcatc gctctaacct tagcaagctc gtcgagtgat
     1261 agcgattcgg tcgcgcgagt gcagatgcct gtttggatcg ttactgcggt taacctctgc
     1321 gtttgccgaa acactttgag ttcgagatct ccgcgcgtgt gatagtgcgc ttcgaagcca
     1381 accagcttgg ttgagttttc atcgaccgca gctaaagaat cgatggcacg cagcagcgga
     1441 tcgagttcct catagtccac aaacgctcga ttgtcctcga tacgatcggc gctttcacgc
     1501 agtgcgacta cgactccttt tgctcgtcca ggtccaccca ggaccctcat ttcgaccgca
     1561 tcgatccgca cacctctaac gtcgacggtg gtgatttggg aaaaaccacg gatgacgacc
     1621 gtctcccttt tcatttcgag cgcttccaat gtcgtccgcg gctcaaaggg ttggcacgtc
     1681 aactttcgcc agaactccgg gcccggttgt tgcccgacgc aaatgccact gcaaacaaac
     1741 aaaagaagca aaatgggaat tgtgcgtatg atctgcatgg tgtcagtctc tttcgagaga
     1801 gatgtaagaa ctattgcgac gacggtcgaa caatcaagga gagaatggtt ctctctacac
     1861 gggtcaaact actcaaggtt ccgaaaagta acaagtattt attcaacagt catttcattg
     1921 tttacgaggt agcgtgactc gactatctta tccgctcgca atacaaaata aaccaagcgg
     1981 aggatactcg taatgtcaga ccattatcat gatccaaatg atctcggact tctaaaagag
     2041 atgcggaaac tggctcaggt tgatttcgac gcctggctga acctgaacaa tattgtcggt
     2101 cgtgaaggtg gtgcattgcc tccaaagatt cgagaactga tcgcagttgg ggtcgcatgc
     2161 acaacgcagt gtccctactg cattgaagtt cacgcgaaag cggcgaaagc agcgggagcg
     2221 acgcgtgaag aattggttga gacagcgttt gtcgcggcgg ctttacgcgc gggtggtgcg
     2281 gcgacgcacg gagcaatggc gttgaaattc ttt
//
LOCUS       DATCGC010001439         1125 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_188576, whole genome shotgun sequence.
ACCESSION   DATCGC010001439 DATCGC010000000
VERSION     DATCGC010001439.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1125
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_188576"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..824)
                     /locus_tag="VIJ87_13820"
     CDS             complement(<1..824)
                     /locus_tag="VIJ87_13820"
                     /inference="COORDINATES: protein motif:HMM:NF041895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="choice-of-anchor V domain-containing protein"
                     /protein_id="HEY5445514.1"
                     /translation="MKPSRSLERVRFVILPALLAAICGFLLSSTTSVQKVGAFSSGPP
                     PGYTGAPREEPEACAECHVPPSVGTGHIAITAPASYIPGQTYPITVTHTNTDPTRIRW
                     GFELTVLDTSDEKAGELHSLDGTTQIINNAGPGGARQYIEHTSAGTFVGQQNGASWTF
                     NWTAPPTDIGFVTFYVAGNQANNDGNSSGDFIYKTFVAAAPASATPDFVVSVSPSSRT
                     VVPASSAQYTVTVTPLAGFLGTVNLSATGLPAGGAPVFSPTSVVINDATSKTATLTL"
BASE COUNT          267 a          280 c          319 g          259 t
ORIGIN      
        1 agtgtcaatg ttgccgtctt cgaagtggcg tcattgatga ctactgacgt gggactgaac
       61 accggagcgc caccggcggg taagcccgtt gcacttaagt taaccgtgcc aagaaatcca
      121 gcaagaggtg taaccgttac ggtgtattga gcgctgctgg caggaacaac tgttcgagat
      181 gagggactga cgctgacaac aaaatcaggt gtcgccgaag ccggtgctgc ggcaacgaaa
      241 gttttgtaga tgaagtcgcc tgacgaattg ccatcgttgt tagcttgatt gccggcaacg
      301 taaaaggtaa cgaatccaat atcagttggt ggagcagtcc agttgaaggt ccagctcgcg
      361 ccgttctgtt gtccaacaaa agttccggcg gatgtgtgtt cgatatattg acgcgcgcct
      421 cccgggccgg cgttgttaat tatctgagtt gtgccgtcta aactatgaag ttccccggct
      481 ttctcatccg aagtatcgag aacagttagt tcaaagcccc aacgtatcct ggttggatcg
      541 gtgttcgtat gagtgactgt gattggatag gtttgaccag gaatataact agccggagcg
      601 gtgatggcga tgtgacctgt tccgacagag ggaggcacgt gacactcagc acaggcctca
      661 ggttcttctc gcggcgcacc ggtgtaacca ggaggtggtc cggatgaaaa agcgccaacc
      721 ttctgcacgc tcgtagtgct agataaaaga aatccgcaaa tcgctgccag cagcgctgga
      781 aggataacaa accgaactcg ttcgaggctt cgagaaggct tcatcgtgat tttcttaaac
      841 tggtgccgtt tggagagaac agcctacgat ccccttcagt gacgtcattg aactaatgga
      901 cgccctcttc cgggactgca ggcgtcctcg cctgccttcg tacatctaag ggcgccatcg
      961 agcgacggcg agcaggcgag gacgcctgcg gtcccagaag agggcgtcca ttagttcgat
     1021 ggcttcactg aaggccatca aagttgctag gctattcttc taatttcaca cccatgtgtt
     1081 gcgcaccgct ctcttacgac aggaaaccga gattcgaact cggga
//
LOCUS       DATCGC010001440         1112 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_486884, whole genome shotgun sequence.
ACCESSION   DATCGC010001440 DATCGC010000000
VERSION     DATCGC010001440.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1112)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1112)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1112
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_486884"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..378)
                     /locus_tag="VIJ87_13825"
     CDS             complement(<1..378)
                     /locus_tag="VIJ87_13825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445515.1"
                     /translation="MDLPTPKVPSLLEVSQGASLVRLSIFWRIVLTSLLIIVVMAGVN
                     FYALFQLRQLSALSTTLASQHYPAIEQAKHVQAVAFNQLNSEKKYLAVRDPTFLQHFD
                     EEVEEFHRGIENLLRQDTSPEGRQ"
     gene            complement(508..>1112)
                     /locus_tag="VIJ87_13830"
     CDS             complement(508..>1112)
                     /locus_tag="VIJ87_13830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445516.1"
                     /translation="VSYARTITIKDVLDSFGHYFWDVIGVGFVLWLPFMALDMGTQQN
                     PNGPLISYAVMLLIFILLNPAPEIIYQVPHDSPLDVFKHAYDFVLENWIEWFLPMVVL
                     LLPLVAALGGLTSFFLLSHRVGRGAGLDFSQILIFPFTILGSWLSSLGVGPELAQYLI
                     VLFTPPLAVSILLFRGHLFASLSRSSHRQRQFASQSKGNQ"
BASE COUNT          303 a          285 c          305 g          219 t
ORIGIN      
        1 ttggcgccct tcgggggacg tgtcctggcg cagaagattt tcgatcccac ggtggaattc
       61 ctccacttct tcgtcgaagt gctgaaggaa cgtcggatcg cggacggcca gatacttttt
      121 ctcactgttg agctggttaa aggctaccgc ttgaacgtgc ttagcctgct caatggccgg
      181 ataatgttgg gaggcgagtg tcgtactcaa tgcagacaat tgccggagct gaaataaggc
      241 gtaaaagttc acgccggcca tcaccacgat aatgagcagg gatgtcagga caatgcgcca
      301 gaaaatcgac aaacgcacga gcgaagctcc ctgtgagacc tctaataatg agggcacttt
      361 aggtgtaggt aaatccatac actaatttca tctctcactc aagagttaaa ctgtatcgcc
      421 caccggccga acacgatagt ctccgtggtc atcaaaggca gacggtccat ctccgcctgt
      481 gcagaggact ttgacgaacc aataactcta ttggttcccc ttggactgcg aggcgaattg
      541 tcgctgacga tgggaggatc gagatagtga tgcaaagagg tggccacgaa acaggaggat
      601 cgacacggcc aggggcggtg tgaacagtac gataaggtac tgagccaact cagggccgac
      661 gccgagcgac gacaaccaac taccaagaat cgtaaacgga aaaatcagaa tttgtgaaaa
      721 atccaatcct gcgcctcttc ccacccggtg cgagaggaga aaaaatgacg taaggcctcc
      781 cagcgccgcg acgagaggca gcaggaggac gaccatgggc aagaaccatt cgatccagtt
      841 ctccagcaca aagtcgtagg catgcttgaa gacatccaac ggcgagtcat gcggtacctg
      901 gtagatgatt tccggggccg gattgagcag gataaatatc aacaacatca ccgcgtagga
      961 aatcagtggg ccgttgggat tctgttgggt gcccatgtct agtgccatga acggaagcca
     1021 gagcacaaat cccactccga tgacatccca gaagtagtgc ccgaaactgt cgagcacatc
     1081 cttgatcgtg atcgtcctcg cataggacac cg
//
LOCUS       DATCGC010001441         1129 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_88293, whole genome shotgun sequence.
ACCESSION   DATCGC010001441 DATCGC010000000
VERSION     DATCGC010001441.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1129)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1129)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1129
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88293"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            435..>1129
                     /locus_tag="VIJ87_13835"
     CDS             435..>1129
                     /locus_tag="VIJ87_13835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445517.1"
                     /translation="MQHRRRIQYFLLLAVSLFAIAFLVNNRITTSASADLQTASVIVQ
                     LKQDPAAVYKAKTETAGGTVSQDQLQAYRDQLRGSQDQFLNDLRAQGVNFTVDGVDVP
                     NFTGGIAGHVDFRYTLVLNGIALKLSPSVIATLKAMPQVKSVNATRTLRLQLEKSVDY
                     VNAPAAYGQYQELTPFDDFREGYEGQGINVAVLDTGIDWTHPMFGGDPTPPRLGIAPP
                     VAAVNTNKKVIYY"
BASE COUNT          260 a          325 c          274 g          270 t
ORIGIN      
        1 cgccaccgta gaccgtgtga acgggttgtc gccgacctgt ttcacccggg tagtgggtgg
       61 cgaattcctc atttgcctga cgcaaaccat cggttaagtc attcaacgac tctgctgaaa
      121 gtaaggcctt catgggtgtc ctctgtgcga atgtgaattg tgagtcgagt ttagttgagc
      181 gatgaggcaa gtggcaaagt gtgggattgg acttgggaca ttgggctttg gacttgggac
      241 ttgggtggct tctgaagatt gaggcgccca cctccagaac cacctcaagt ttttctcaac
      301 cacccaaaat ccctcgccag actgcgaaaa acctctagct ggaccgttca agtttttctc
      361 aactgctaca cgttaccttt tcatcgttca ccggttccaa gttgatttcg acgaccttga
      421 tggaggcgac gtccatgcag cacagacgac gaattcagta cttcttatta ttggccgttt
      481 cactattcgc aatcgctttc ctcgtcaaca atcgaataac aacctccgct agtgctgacc
      541 tccagaccgc gtcggtgatc gtccagctca agcaagatcc cgccgcggtc tataaggcca
      601 agaccgaaac cgctggtggc acagtttccc aggatcaact tcaggcttat cgagatcaac
      661 ttcgcggaag ccaggatcag tttctgaacg acctccgcgc tcaaggtgtc aatttcaccg
      721 ttgatggcgt cgacgttcca aacttcactg gcggtatcgc cggacacgtc gacttccgct
      781 acacgctcgt cttgaacggt atcgcactca aactttcgcc ttcagtcatc gccacgttga
      841 aagcaatgcc gcaagtcaag agtgtcaacg ccactcgcac gctgaggctt cagctcgaaa
      901 agagtgtcga ctacgtcaac gctcctgcgg cctacggtca gtatcaggaa ctcactccgt
      961 ttgacgactt ccgtgaaggc tacgaaggcc agggaataaa cgtcgcagtc ctcgacactg
     1021 gaatcgactg gacacatccg atgtttggtg gcgatccgac tccgccacgt ctcggcatcg
     1081 cacctcctgt cgctgccgtc aacaccaaca agaaagttat ctactacat
//
LOCUS       DATCGC010001442         1027 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_486901, whole genome shotgun sequence.
ACCESSION   DATCGC010001442 DATCGC010000000
VERSION     DATCGC010001442.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1027)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1027)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1027
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_486901"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(14..298)
                     /locus_tag="VIJ87_13840"
     CDS             complement(14..298)
                     /locus_tag="VIJ87_13840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445518.1"
                     /translation="MKSDEIEGDDFVLLGSYSPTEAAKLLERFHQAGIAFRAQPRTLP
                     PDPLSTVLIDISVDSTRAGEVAQIHRDLFGDGPPNYASSFFRDRRNQRNV"
     gene            complement(377..844)
                     /locus_tag="VIJ87_13845"
     CDS             complement(377..844)
                     /locus_tag="VIJ87_13845"
                     /inference="COORDINATES: protein motif:HMM:NF024865.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEY5445519.1"
                     /translation="MRRALFIGVLILTVAPMGEGQKQSARGSRQTSVEEVIKKLDNER
                     IQAQIHADATTLDRIYAADFTGVGPSGRVRTKPQVISDFTSGDLKFQSITTDDVQVRV
                     YGNTAVETGRSIMNGQDKGQTVPRDTRFTRVWVKQEGRWRLVANHYSSQTTHQ"
BASE COUNT          229 a          271 c          274 g          253 t
ORIGIN      
        1 cggacatcgc acatcagaca tttcgttgat tgcggcgatc acgaaagaaa gacgaagcat
       61 aattaggagg accatcgccg aaaaggtcgc gatgaatctg agcgacttcg ccggcgcgcg
      121 ttgagtccac actgatatcg atgagaaccg tcgacaaagg gtcgggagga agagttctgg
      181 gttgagcgcg aaaggcaatt cccgcctggt gaaatcgctc cagcaacttt gcggcttctg
      241 tgggggaata gctcccgagt aacacgaaat cgtcaccttc aatttcatct gatttcatgg
      301 gcgcatgact gcctgccgcg tatcttcgtt cacgcgggtt ggcttcatcg attggttaga
      361 catttggtgt gtctgcttat tggtgcgtag tctgggacga gtaatggttg gcaaccaacc
      421 gccagcgccc ttcctgcttt acccacaccc gggtaaagcg agtgtcacgg ggaacagttt
      481 ggcctttgtc ttgcccattc attatcgagc ggccagtctc cacagccgtg tttccataga
      541 cgcgcacttg aacgtcatcg gtagtgatag attgaaattt caaatcacct gacgtgaaat
      601 ctgaaatcac ctgcggcttg gttctcactc tgccacttgg ccctacgcct gtgaaatcag
      661 cagcgtagat gcgatcaagg gtcgtcgcat cagcatgaat ctgtgcttga atgcgttcgt
      721 tatccagttt tttgatgacc tcctcgacac tcgtttggcg actgcctctc gcgctctgct
      781 tttgcccttc gcccataggg gccactgtga ggatgaggac acctataaag agtgctcgtc
      841 tcatgtagag gtctccataa gcctaacgag aacaagctaa gccaccgcgg ccccgccacg
      901 gccggtgaac ttcagcgagt gtgtcaaact ttcactttat ccttcataat tcattagtgt
      961 ttcacgcgca actgccagcg gacgcgatcg agcaatttcg gcgatgaagc gacggcggcg
     1021 gtggtag
//
LOCUS       DATCGC010001443         1339 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_54819, whole genome shotgun sequence.
ACCESSION   DATCGC010001443 DATCGC010000000
VERSION     DATCGC010001443.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1339)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1339)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1339
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54819"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(91..>1339)
                     /locus_tag="VIJ87_13850"
     CDS             complement(91..>1339)
                     /locus_tag="VIJ87_13850"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY5445520.1"
                     /translation="RRSAKMRLVRSSRVFLVILILAAFVLPAHAQNKRIVIAASVLFD
                     GKGHVAHNTRIVVEGVKIVAIDPKAGPVDYDLRALTVLPGWIDAHDHITWSFGKDGKN
                     VGAGETTQEAAYRSATNAWLTLMAGFTTIQSLGSPTDLPLREAIAKGLLPGPRILTAV
                     EPLIGRGEQTGTPDDIRAFVRKQKMAGADVIKIFASQSIRQGGGMTLSPEQLGAACDE
                     ANKQGLRSLVHAYKDAVRAATLAGCTQIEHGTLATDDDLKLMAEKGTYLDPQAGLIIE
                     NYLLNKDRYIGTPGYTAEGFAAMEKILPLNHQLVQRAAKTPRLKIVFGTDAVAGSHGR
                     NAEEFIDRVRDGGVDPMAAMVSANSLGAEAMGLSDQIGSIAPGLQADIIALDGDPLKD
                     ITAVRRVVFVMKGGVVYKSPARH"
BASE COUNT          316 a          381 c          327 g          315 t
ORIGIN      
        1 ccacagattg acaccgaaaa cactgatcag aacagcttaa ttgttttctg atcaatgcca
       61 atcagtgttc atctgtggca gaaaacttgg ttagtgacgc gccgggctct tgtagaccac
      121 gccgcctttc atcacaaaga caacgcgcct cacggcagta atatccttca acggatcgcc
      181 gtcaagcgca attatgtcag cttgtaaacc cggagcgatc gaaccaatct gatctgacaa
      241 acccatcgct tccgcaccaa gcgaatttgc tgaaaccatc gcagccattg gatcgactcc
      301 accatcgcgg actcgatcga taaactcctc tgcgttccga ccatgtgacc ctgcgaccgc
      361 atctgtgcca aacacaatct tcagacgggg cgttttagct gcgcgctgca ccagctgatg
      421 attgagcggc aagatcttct ccatcgccgc aaaaccttct gctgtgtaac caggcgtgcc
      481 gatgtacctg tctttgttaa gcaaatagtt ttcgatgatt agtccagcct ggggatcgag
      541 atacgtccct ttctccgcca tcaacttcaa gtcgtcgtct gttgccagag tgccatgttc
      601 aatctgtgtg cagcctgcca acgtcgcagc tcgcacagca tctttgtagg cgtggacaag
      661 gctacgtagc ccttgtttgt tcgcttcgtc acatgcagca ccgagttgct ctggcgacag
      721 agtcataccg ccgccctggc gaatgctttg cgatgcgaaa atcttgatca cgtccgcgcc
      781 tgccattttc tgcttacgca caaaggcacg aatgtcatcc ggagtccctg tttgttcgcc
      841 gcgcccgatg agtggttcaa cagcagtgag aatgcgcgga ccaggaagta gtcctttggc
      901 gatagcctct ctcagcggca gatcagtcgg tgaaccaaga ctttgaatcg tggtgaaacc
      961 ggccatcaac gtcagccagg cattggttgc agaacggtaa gcggcttcct gggtagtctc
     1021 accggcgcca acatttttgc cgtctttgcc aaagctccag gtgatgtgat cgtgagcgtc
     1081 gatccatccc ggtaacactg tgagagcgcg caagtcgtag tcaactgggc cagccttagg
     1141 atcgatggca acgatcttca cgccttcaac aacaattcgt gtgttgtgag caacgtgacc
     1201 tttaccgtcg aacagaacac tcgcggcaat cacaatgcgt ttgttctgtg catgtgcagg
     1261 aagaacaaaa gccgcgagaa tgagaatgac gagaaatacc cgagacgatc ttacaagtcg
     1321 catcttcgcc gacctcctt
//
LOCUS       DATCGC010001444         1138 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_418940, whole genome shotgun sequence.
ACCESSION   DATCGC010001444 DATCGC010000000
VERSION     DATCGC010001444.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1138)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1138)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1138
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_418940"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(72..>1138)
                     /gene="pstS"
                     /locus_tag="VIJ87_13855"
     CDS             complement(72..>1138)
                     /gene="pstS"
                     /locus_tag="VIJ87_13855"
                     /inference="COORDINATES: protein motif:HMM:TIGR00975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0042301 - phosphate ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HEY5445521.1"
                     /translation="LTRRFLLFACITALVPSLAFTACRPGGGTEQSVKLQGAGATFPN
                     PLYQKWLSEYSKLHQNVLIDYQSLGSGAGIKQIQAQTVDFGASDAPMKDEDLKAAPGE
                     ILHIPTVLGAVVITYNVPGINQSLKFSGDVIADIFLGKIKKWNDPKIAADNPGVAFPS
                     TDITVVHRSDGSGTSAVFTDYLSKVSSEWKEKVGAGVSPSWPVGLGGKGNEGVTGQIK
                     NTPNTLGYVELAYAVQNNLHVAHIKNSAGNFIEPSIDAVTAAAAASAGTTPEDLRVSI
                     TNAQGGTAYPISSYTYILLYKNQKDAAKGKALVDFVWWGIHDGEKYAPDLRYATLPDD
                     IVKRAEAKLNSITANGAPVR"
BASE COUNT          256 a          295 c          284 g          303 t
ORIGIN      
        1 ttcgcgaact tgagaagttg ccgaatggtc cgggattcgt ctctaagcgt gcactcataa
       61 aaacgcagga tctacctcac cggtgcgccg ttggcggtta tcgaattcaa tttcgcttcc
      121 gcgcgtttta cgatgtcgtc aggcaatgtg gcgtaacgaa ggtccggagc gtacttctcg
      181 ccatcgtgga taccccacca gacaaaatcg acgagtgctt tgccttttgc agcatccttt
      241 tgatttttat aaagaaggat ataggtgtag ctggagatcg ggtacgcggt gccgccttgt
      301 gcattcgtaa tcgagacgcg cagatcttcc ggtgtcgttc ccgctgaagc tgcggctgcg
      361 gcagtaaccg catcgattga aggttcaata aagttgcccg cgctattctt gatgtgcgca
      421 acatggagat tgttttgaac cgcgtaagcg agctcaacat aacctaacgt gttcggcgta
      481 ttcttgattt gtcccgtaac accttcattt ccttttccgc caagtccgac gggccaactg
      541 ggtgaaacgc cagctcccac tttctctttc cattcagaac tgactttcga taagtagtca
      601 gtgaatactg ctgacgttcc gctaccatcc gaacgatgga ccaccgtgat gtccgttgaa
      661 ggaaatgcaa cacccggatt gtcagcagca atctttgggt cattccattt cttaatcttg
      721 ccaaggaaga tgtctgcgat tacgtcaccc gagaatttca aactctggtt gatacctgga
      781 acgttgtagg tgattactac tgccccaaga accgtgggga tgtgcagaat ttctccgggc
      841 gcggctttca ggtcctcgtc tttcatcggg gcatccgagg cgccgaaatc aactgtttgg
      901 gcttgtatct gtttgattcc agctcctgaa cccagcgact ggtaatcgat cagcacgttc
      961 tggtgtaatt tcgagtattc acttagccac ttctgatata gcggattcgg aaacgtcgcg
     1021 ccggctccct gaagctttac gctctgctcc gtacctcctc ccggtctaca cgctgtaaaa
     1081 gccaaacttg gaaccagagc tgtaatgcag gcgaaaagca ggaagcgtcg tgtaagaa
//
LOCUS       DATCGC010001445         2364 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_353890, whole genome shotgun sequence.
ACCESSION   DATCGC010001445 DATCGC010000000
VERSION     DATCGC010001445.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2364)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2364)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2364
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_353890"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(28..1545)
                     /locus_tag="VIJ87_13860"
     CDS             complement(28..1545)
                     /locus_tag="VIJ87_13860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445522.1"
                     /translation="MKSLALGLFLFAMLAASVSTTTPPVQKTSYGLFDDHSDVGPVKN
                     KGEVNYDASRQEYTLTGSGTNMWLGSDEFHVVWKRVKGNFILSSRAQFVGKGVEPHRK
                     IGWIVRKSLEQNSPHATAVVHGDGRTSLQFRRTSGAITEEKIFTIKDADILQLERKGD
                     TYIASMAKFGDPFVSEQISGLDLGDEVYVGLFVCSHNKDVVEKAVFNNVRITIPARDN
                     FVPYREYIGSDLEILDVTTGNRRIIYHVADSLQAPNWTRDGKTLIYNRNGRLYRFDLK
                     SGTPTELNTDFAIRNNNDHVLSFDGKMLAISHHVSEEQNQSNVFTVPASGGKPKRITK
                     TGPSYLHSWSPDGKSLIFTGGRNGEFDIFKISALGGDETNLTKTPGLDDGPEYTPDGK
                     YIYFNSTRSGLMQLWRMKPDGSQPERVSNDEFNNWFPHISPDGKWIVFVSFLQDVRPD
                     DHPFYKHVYIRLMPISGGPAKIVAYLYGGQGTINVPSWSPDGKKVAFVSNSDVVK"
     gene            complement(1822..>2364)
                     /locus_tag="VIJ87_13865"
     CDS             complement(1822..>2364)
                     /locus_tag="VIJ87_13865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445523.1"
                     /translation="FFTDHWQLSGVYAFQSGSPYGVGFSIPGGIGNAQLTGSATEGAR
                     IRVQGAPGAGNSGDPYRQILTSAFTPPLPGSLGLESGRNYLIGPGINNVDLTLQKTFT
                     IKERGRLEFRVDAFNALNHTQFSGVNSTLNVTSLTNFTPTNLPYDANGNFIFANRNGF
                     GTINGARDPRILQLVARLSF"
BASE COUNT          587 a          610 c          571 g          596 t
ORIGIN      
        1 cagagaacac agaggtggca cagagaatta cttcacgacg tcgctattac taacaaacgc
       61 taccttctta ccatccggcg accacgaggg aacattgatc gtaccctgtc caccataaag
      121 gtaagcaaca attttcgcgg gtcccccgga tatcggcatt aagcgaatat agacgtgctt
      181 ataaaacgga tgatcgtccg gccgaacatc ctggaggaac gacacaaaga ctatccactt
      241 cccatcgggt gaaatatggg gaaaccaatt attgaattcg tcattcgaca ctcgttccgg
      301 ttgcgagcca tccggcttca tacgccagag ttgcatcaag ccacttcgcg tcgagttgaa
      361 atagatgtac ttgccgtcag gggtatattc cggtccatca tcgagtcctg gcgtttttgt
      421 gaggttggtt tcgtccccac cgagtgctga gatcttgaag atatcaaact caccatttcg
      481 ccctccggtg aaaatcaaag actttccatc tggtgaccaa ctatgaagat acgaaggccc
      541 agttttcgtg attctctttg gcttaccacc actagccggc accgtaaata catttgactg
      601 attctgttcc tcactaacgt gatgactgat cgcaagcatc tttccgtcga acgacaatac
      661 atgatcgttg ttgttgcgta tcgcaaagtc ggtgtttagt tccgtgggtg ttccgctctt
      721 caaatcgaat cgatagagac gaccattgcg gttgtagata agtgttttcc catcacgagt
      781 ccaattgggt gcctgaagtg agtccgcaac gtggtagata atccgacgat ttccagttgt
      841 aacatccagg atttccaaat cgctcccgat gtattcacgg taagggacaa aattatctcg
      901 cgctggaatt gtaatccgga cattgttgaa gacggctttt tcaaccacgt ccttgttgtg
      961 ggaacagaca aacagcccaa cgtaaacttc atctcctaaa tccaaaccgg agatttgttc
     1021 acttacaaat ggatcaccga acttggccat cgaagcgatg taggtatcgc ccttccgctc
     1081 caactgcaga atgtcagcgt ccttaatagt gaaaatcttt tcctctgtta ttgctccact
     1141 tgtgcgacga aactgcaatg aagttctacc gtcgccatga acgacagcgg tcgcgtgcgg
     1201 agagttttgc tcaagactct tgcgaacaat ccagccaatc tttctgtgtg gctcaactcc
     1261 tttcccaaca aactgcgccc gactcgacaa gataaagttg cctttcacgc gtttccacac
     1321 aacatgaaac tcgtcacttc cgagccacat gttcgtgccc gatccagtca acgtatattc
     1381 ctgacgacta gcgtcgtagt tgacttcgcc tttgttcttc accggaccta cgtcggaatg
     1441 atcgtcaaag agtccgtatg acgttttttg caccggtggt gtggtcgtcg aaacgcttgc
     1501 cgcaagcatt gcgaaaagaa acagacccaa cgctaaagac ttcatagttt ttgtcgccct
     1561 ttagtaatcc ctggaaaatt caacggggcg cgctcttctg ggaccgcagg cgtcctcgcc
     1621 tgcattggtc gccactaaaa cgagctcggc gccgcgtttg caggcgagga cgcctgcggt
     1681 ctcagaagag cgcgcccgac gaaatgattg tagctactga agggcatcgt cacttccgcg
     1741 acccgaacct tttactgaca aacaacggcg gtagaagatc caccgccgtt gttgcctact
     1801 tcacagtgcg agttgtgttg attaaaagga caagcgagcc accaactgta agattcgtgg
     1861 atcacgtgcg ccgtttattg tgccaaagcc gttgcgattc gcgaaaatga aattgccatt
     1921 tgcatcgtac ggcaggtttg tcggagtgaa gttagtcaaa ctcgtaacat tcagcgtcga
     1981 gtttacgccg ctaaactgag tgtgattgag agcattaaac gcgtcgacgc gaaactcgag
     2041 acgtccacgt tctttgattg tgaatgtctt ttggagtgta aggtcgacgt tgttgatgcc
     2101 agggccgatt agatagttgc gacctgattc aaggccaaga cttccaggca gtggaggagt
     2161 gaatgcgctc gtcaatatct gacgatacgg atctccgcta ttgccggcgc caggtgcacc
     2221 ttgaactcga atgcgtgcgc cttccgtggc ggacccggtg agttgtgcgt tgccgatacc
     2281 gcctggaatg ctgaatccaa ctccgtaggg cgaaccgctt tggaatgcat aaacacccga
     2341 gagctgccag tggtcagtaa agaa
//
LOCUS       DATCGC010001446         1070 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_23871, whole genome shotgun sequence.
ACCESSION   DATCGC010001446 DATCGC010000000
VERSION     DATCGC010001446.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1070
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23871"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..300
                     /locus_tag="VIJ87_13870"
     CDS             <1..300
                     /locus_tag="VIJ87_13870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445524.1"
                     /translation="LAEAKLETGDAAGCVDASLRAQQIFAKLHESEREWRAWLLAARA
                     SQRLGNLDGMRQQLSNAQALLNGLKEKWGNEAFNSYLSRPDIQFAHQQLSALAAS"
     gene            complement(318..1010)
                     /locus_tag="VIJ87_13875"
     CDS             complement(318..1010)
                     /locus_tag="VIJ87_13875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445525.1"
                     /translation="MKKTSRRNFGKLIAGAAAALPVASLSSISTEAQQHQDTPPDILL
                     KEGSLKLDVKDVNLGAGDELPKHPSGDYYRWEFPTTATEIYIVGVQIVSGAGKILFFL
                     NRDNVDQAEKLPLHILVHMEGTAGSRKELILSTEGKYVTFKVPMDRVLKKKRLTPNGP
                     FEPGSTGRIRFRYFDTGGAENWKIEGVAVGIGPAGAHKVITRFNRADLGTAINGVQVM
                     LWFDNLANEQRR"
BASE COUNT          253 a          271 c          272 g          274 t
ORIGIN      
        1 ctcgctgaag caaagttaga aacgggtgat gcagcagggt gcgttgacgc cagccttcga
       61 gcgcaacaga ttttcgcaaa actgcatgag agtgagaggg aatggcgagc ctggctttta
      121 gctgctcgcg caagccaacg gctggggaat ctggatggaa tgcgccagca actatctaac
      181 gctcaggccc tattaaatgg cttgaaagag aaatggggca acgaagcgtt taatagttac
      241 ttgtccagac ccgacattca atttgctcac cagcaattga gcgcgttggc agcatcgtga
      301 gggcgataaa gattcactta ccgtctctgt tcgttagcta gattgtcgaa ccaaagcatc
      361 acttgtactc cgtttatggc ggtgcccaaa tcggcccggt taaatcgtgt gattactttg
      421 tgagcgccgg cgggaccaat gccaactgcg accccctcga ttttccagtt ctcagcgcca
      481 ccggtatcga aatacctaaa ccgtattcgg cccgtggaac caggttcaaa tggtccattc
      541 ggtgttagac gttttttctt caggactctg tccatcggaa ccttaaaggt cacatacttt
      601 ccttcggtag agagaatcaa ctccttccga ctgccggcag ttccttccat atggactagt
      661 atgtggagtg gcaatttttc tgcctgatcg acgttatcgc gattaaggaa gaacaagatc
      721 tttccagccc cggaaacgat ctgcacgcca acaatataga tctctgtcgc ggtggtcggg
      781 aattcccagc ggtagtagtc gcccgaagga tgtttgggaa gctcgtcgcc tgcgcccagg
      841 ttgacgtcct tcacatccag ttttagtgac ccctccttca ggagtatgtc aggtggagta
      901 tcttgatgct gctgcgcttc cgtggagata ctgcttagcg aagcaacagg taaagctgca
      961 gcagctcctg cgattagctt tccaaagttg cgacgtgaag tttttttcat tgtgtctcct
     1021 ttggagatag tcagttctcc ctcgacaaaa acgcactaac caactgcctt
//
LOCUS       DATCGC010001447         1028 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_152756, whole genome shotgun sequence.
ACCESSION   DATCGC010001447 DATCGC010000000
VERSION     DATCGC010001447.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1028)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1028)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1028
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152756"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..216
                     /locus_tag="VIJ87_13880"
     CDS             <1..216
                     /locus_tag="VIJ87_13880"
                     /inference="COORDINATES: protein motif:HMM:NF016292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate binding protein"
                     /protein_id="HEY5445526.1"
                     /translation="NVTGMTNLLVQLGDKRLELLKEAVPKITRVAVPYVPENATHSLE
                     LKEVQSAARALGVTVQTFEIRNGHQFR"
     gene            275..577
                     /locus_tag="VIJ87_13885"
     CDS             275..577
                     /locus_tag="VIJ87_13885"
                     /inference="COORDINATES: protein motif:HMM:NF016292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate binding protein"
                     /protein_id="HEY5445527.1"
                     /translation="MIREHQKRIVDFALKTRLPSVFTSIEAVKSGGLLYYAADLADTY
                     RRVAIYVDKILKGAKPPDLPVEQPTKFEFVINLKTAKQIRLTIPTSVLARADRVIR"
     gene            654..1028
                     /locus_tag="VIJ87_13890"
                     /pseudo
     CDS             654..1028
                     /locus_tag="VIJ87_13890"
                     /inference="COORDINATES: protein motif:HMM:NF016292.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate binding protein"
BASE COUNT          280 a          269 c          256 g          223 t
ORIGIN      
        1 aatgtcaccg gaatgaccaa tctgctcgtt caactcggtg acaaacgtct ggaactcctg
       61 aaggaagccg taccaaaaat tactcgtgtc gctgtccctt acgttccgga aaacgcaacc
      121 cattcactcg aactcaaaga agtgcagagc gcggctcgag ccctgggcgt aaccgttcag
      181 acgttcgaga ttcgaaacgg tcaccaattt cgatgaagtt tttgcatccc taaagaaaaa
      241 ccgtccggat ggactccaac tcctcggcgg cccggtgatc cgcgaacatc aaaaacgaat
      301 agtcgatttc gctctcaaaa ctcgcctgcc ttccgtgttc acctcgatag aagcggtgaa
      361 aagcggcggc cttctctatt acgccgctga cttggcagac acctaccgac gcgtagccat
      421 ttacgtggac aaaatcttga aaggtgccaa gccaccagac ttaccagtcg agcagccgac
      481 caagttcgaa tttgtcatta acttgaaaac tgcaaaacag atcagattaa cgattccaac
      541 ctccgtgctg gcgagggcgg acagagtaat tcgatgaaag ttaccggtcg tgagtggtcg
      601 gcagtcagaa aaacaatttt ctgctttgcg cttagcgctt aaaaaacacc acattcgagt
      661 accgctatgg cgggggccaa ggtgataagt attctgattt tgcgactgaa cttgttcacc
      721 tcaaggttga cgtaatcgtc gccgggcctg gtaatggagc acccagagcc gccaagcgtg
      781 tgacggcaac gattcctatt gtgatggtgg cagttatcga ccctgtaagg aacggcctcg
      841 tcgcaaacct ggcccgacca ggagcgaata ttactggtat cacatttgaa gttacgcggg
      901 agcaggctgg gaaaaatctg gaccttctta aggaagtagt acctacggtc acgcgcgtgg
      961 cgattctcag aaatcctagc gtttcaaccc atatcgatta cggcaaggaa gcagagagag
     1021 caaccaag
//
LOCUS       DATCGC010001448         1123 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_353933, whole genome shotgun sequence.
ACCESSION   DATCGC010001448 DATCGC010000000
VERSION     DATCGC010001448.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1123
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_353933"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1123
                     /locus_tag="VIJ87_13895"
     CDS             <1..>1123
                     /locus_tag="VIJ87_13895"
                     /inference="COORDINATES: protein motif:HMM:TIGR01733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEY5445528.1"
                     /translation="ANQLAHYLINTGVGAEVRVAMCLKASLNVAVSLLAILKAGGVYV
                     PLDPADPLERIITILEDNQPTIILTDSLVIPNLPPSAVPIFSFNRDSDKLQSFPNNNP
                     GVEIELDQTAYLVYTSGTTGKPKGVMASHGNLIQYIVSAQERYGFNGQDIMPAMARFT
                     FSISLFELLSPLVAGGRLLLLERDQILNFKQMAQILDQVTVIHASPSWWRKLFGYVLS
                     HHQKEDAFQNLRHASSGGDTVPGDLLETMKRLFPNAEIFVIYGCTEISCMGCTYPALR
                     DEKITKSWLGKPFSNVEVRLLDSEQCSVPSGEKGEIYLAGAGVTKGYLNRPELSAEKF
                     LTIDGKRFYRTGDLARFDRGNLEILGRVDFQIQLRGIRIE"
BASE COUNT          270 a          295 c          278 g          280 t
ORIGIN      
        1 gcgaatcagc tcgctcacta ccttatcaat actggtgttg gagcggaggt tcgggtcgca
       61 atgtgcctga aagcctccct caacgtggcg gtgagtcttc tcgccatcct gaaagcaggt
      121 ggagtctatg tcccactgga cccggcggac ccgttggagc ggatcatcac gattctggaa
      181 gataaccagc ctacaataat tctgacagac tctctggtca tcccaaacct cccaccgagc
      241 gcggtcccca ttttcagttt caatcgggat tcagacaaac ttcaatcctt tcccaacaac
      301 aatccaggag tcgagatcga gttggatcaa actgcctatc tcgtctatac ctctggcaca
      361 accggcaaac ccaagggggt catggcgagc catggcaatc ttatccaata catcgtttcc
      421 gcccaggagc gttatggctt caatgggcag gatatcatgc cggcgatggc tcgatttacc
      481 ttcagcatca gtttgtttga actcttatct cctctggtcg cgggaggtcg tttgttgctc
      541 cttgagcgag atcaaattct caatttcaaa caaatggcgc agatccttga tcaggtaact
      601 gtcattcacg cttcgcctag ctggtggcgg aaactattcg gctacgtgct ttcccaccat
      661 cagaaagagg acgcttttca aaatctcagg catgcatcct ccggaggcga caccgttccc
      721 ggtgatcttc tggaaaccat gaaacgcctg tttcctaatg ccgaaatctt cgtcatctac
      781 ggatgcactg agatcagttg catgggctgc acttacccgg ctttacgcga tgaaaagatc
      841 acgaagtcat ggctaggcaa acctttcagc aatgtcgaag ttcgtcttct cgactcagag
      901 caatgttcgg tcccaagcgg tgagaaggga gaaatctatc ttgccggggc cggagtaacg
      961 aaggggtacc tgaaccgtcc ggagttgtcc gcggagaagt ttctcacaat tgacgggaaa
     1021 cgattttatc gcacgggaga tctggctcga tttgatcgtg gcaatttgga aatcctgggt
     1081 cgagttgatt ttcaaattca actccgggga attcgaatag aac
//
LOCUS       DATCGC010001449         2129 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_188855, whole genome shotgun sequence.
ACCESSION   DATCGC010001449 DATCGC010000000
VERSION     DATCGC010001449.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2129)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2129)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2129
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_188855"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(7..82)
                     /locus_tag="VIJ87_13900"
     tRNA            complement(7..82)
                     /locus_tag="VIJ87_13900"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(47..49),aa:Ala,seq:ggc)
     gene            complement(344..1066)
                     /locus_tag="VIJ87_13905"
     CDS             complement(344..1066)
                     /locus_tag="VIJ87_13905"
                     /inference="COORDINATES: protein motif:HMM:NF014600.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HEY5445529.1"
                     /translation="MKSYLNKAFVIDDPDARIRKEQNLLEFVMENGAPKRIPKGTQIK
                     VTDAKVFKDLVFVLVDGFGWTSKNNLKNKFLNETISTFPPNGNNQKGPNAAWDKGHFL
                     KQLTLIQVVGADGSLKFISEDIAEFYLKLVNDAEKDGVLLGLRSGFRTFPSQQFLFDH
                     QHDPGFNLAAQPGFSNHQDGFAYDFAISSGNGNPLYDWLKKHGPAHGFVRTVNGEPWH
                     WEYRPEVGATGAFKIPRVTDDH"
     gene            complement(1198..1398)
                     /locus_tag="VIJ87_13910"
     CDS             complement(1198..1398)
                     /locus_tag="VIJ87_13910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445530.1"
                     /translation="MIVGILVATAGGVTTYRALYVEPRSAVIITESEVRELPNYKRVV
                     GGALMLVCGAAVAVIAARKMEK"
     gene            complement(1553..>2129)
                     /locus_tag="VIJ87_13915"
     CDS             complement(1553..>2129)
                     /locus_tag="VIJ87_13915"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEY5445531.1"
                     /translation="AEFAGRTSITQRDVMMGRSLFTAVDSFPKPVIAMINGYCLGGGC
                     ELALACDIRIASETASFGQPEINLGIIPGGGGTQRLARLVGEGKAMEMILTGEIIDAK
                     TAFDIRLVNHVVPADQLQAKTIEIANRIADKSPIALQLAKEAVKIASRSNLDEGLRRE
                     VDLFALCFSTEDKNEGVSAFLEKRKPAFKGK"
BASE COUNT          506 a          553 c          536 g          534 t
ORIGIN      
        1 aatgattggt ggagccgagg gggatcgaac ccctgacctc atgactgcca gtcatgcgct
       61 ctcccagctg agctacggcc ccttagtaag gaatattttc aattgaagtg ctgatgcaga
      121 ctagcccagc gattcgaatc cagtcaagca ggggtggggg cggtgatctc gttgcctttg
      181 cacgtgtgga ttggtctcgg acttgaagga gtgttgggtt tctgtactgg agtttttggt
      241 gcaaagccgt gggtgaatgg cggccattag aaaaggggcg gccacggagt gccgccccaa
      301 caaagcagtt acgagcttgc tcggacttga tcgcagattg aaattaatga tcgtccgtta
      361 ccctcgggat cttgaacgca ccggtggcgc caacctcagg acgatactcc cagtgccacg
      421 gctcgccatt cacagtccgg acgaatccat gcgcggggcc gtgtttcttg agccagtcgt
      481 agagtgggtt gccgttgcca ctactgatgg caaagtcgta ggcgaatccg tcctggtgat
      541 ttgagaatcc aggctgtgct gccagattga atccgggatc atgctggtga tcgaatagga
      601 actgctgact cggaaatgtt ctgaagccac tcctcaatcc caacaagaca ccgtcctttt
      661 cagcatcgtt gacgagcttc agatagaact cggcaatgtc ttcggaaatg aacttcagcg
      721 aaccatcagc gccaacaacc tgtatcaatg tcagttgctt tagaaagtgg cccttgtccc
      781 acgccgcatt tggacctttt tgattattgc cgttgggtgg aaaggtcgag atcgtttcgt
      841 tgaggaactt gttcttcaga ttgttcttgg aggtccaacc aaaaccatcc acaagaacaa
      901 agactaaatc tttgaaaact ttcgcatccg tgacttttat ctgcgtcccc ttcggaattc
      961 gcttcggcgc accattttcc atcacgaact ccagcaggtt ttgttccttg cgaatccggg
     1021 cgtctgggtc atcgattaca aacgctttgt tgaggtagct tttcattagg agactccttt
     1081 gtgtgagaga cggtttagga cagcgagggt ttggatgttc gataagcttt agcttgtcgt
     1141 tatgctccag caagcagctc atgaactgga agcgacaagc taaagcatat cggacattta
     1201 tttctccatc tttcgcgccg caatgactgc cacggcagcg ccgcaaacca gcattagtgc
     1261 tccgcccact acgcgtttgt agtttggcag ttcacgaact tcggactcag tgataatcac
     1321 tgcggaccgg ggctcaacgt agagagctcg ataggtagtc acaccgccgg ccgtggcgac
     1381 gaggatgccg acgatcaaaa gaaaaactct caaaggtcac ctttcacttc gcaggaagct
     1441 aagcgggcct tacttcttaa cgacccgtca ccaataaaat actatcaagc cgatttcaga
     1501 gtgctgattt caaattgtag attgggcctt agtgttcgac ccgatagtct tttcactttc
     1561 ctttaaatgc tggttttcgc ttttccagaa acgcactgac gccttcgttc ttatcttcag
     1621 ttgagaagca aagggcaaac aaatcgactt cgcgacgaag gccttcgtct aagttagaac
     1681 gcgaggcgat ctttaccgct tccttagcaa gctgcaaagc aatcggactc ttgtcagcaa
     1741 ttcggttggc gatctcgatt gtcttagcct gcaactgatc cgcaggcaca acatggttaa
     1801 cgagtctgat atcgaacgca gtcttcgcat cgatgatctc gcccgttaaa atcatttcca
     1861 tcgctttgcc ttcaccgaca agacgcgcca ggcgttgagt gccaccaccg ccgggaatta
     1921 ttcccaggtt gatctcaggc tgaccaaacg acgctgtttc actggctatg cgaatgtcgc
     1981 aagccaacgc caattcacaa cccccaccaa gacagtaccc attaatcata gcaatcacag
     2041 gtttgggaaa actgtcgaca gccgtgaaca gggagcggcc catcattacg tcgcgctgtg
     2101 tgatcgaagt gcgtccggca aactctgcg
//
LOCUS       DATCGC010001450         1171 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_152786, whole genome shotgun sequence.
ACCESSION   DATCGC010001450 DATCGC010000000
VERSION     DATCGC010001450.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1171)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1171)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1171
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152786"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1171
                     /locus_tag="VIJ87_13920"
     CDS             <1..>1171
                     /locus_tag="VIJ87_13920"
                     /inference="COORDINATES: protein motif:HMM:NF017390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M56 family metallopeptidase"
                     /protein_id="HEY5445532.1"
                     /translation="AFVAALASVSSWLFRNSAARYRHWIWVAALLLSVGIPLTTSTRV
                     LRQGLSSNAPITEGVAIDPLVQTFARNSQPAQLTGSTLVSEPFLLSRPLALSLIGVYF
                     AFLFYSGLRLGAAWYATRRMKLNAVHLEDQRLTQIVERCATAIKTNAVNVRLCSTESV
                     SVPITIGMFNPIIILPRLLLNEGNEEVLTSAIGHELIHIQRRDYAFNLAYELLFLPLS
                     FHPAAALIRRRIRQTRELSCDELVAERILNAEVYARSLVQLASGTPTLRRLSITTTVG
                     IADADILEARIMSLLNKTKVDTPRKRMLLIAVSLLLLVPCLAAGSFAMKFDLKRSEAV
                     NQEPSQQEKQRREEETVKFARSFTVDSDERAMKERMETDQAFREKMIARQELEMKM"
BASE COUNT          267 a          303 c          298 g          303 t
ORIGIN      
        1 gcatttgtag cggccctcgc aagtgtttca tcctggttat tccgaaactc cgctgctcgc
       61 tatcgccact ggatttgggt tgctgcgctg ttgctttccg tcggtatccc tttgacgacg
      121 tcaacgcgag ttcttcgaca gggactaagc tcaaacgcgc caatcaccga gggagtggct
      181 atcgacccgc tggttcaaac gtttgctcga aactcgcaac cggcgcagct aaccgggtcg
      241 acattggtta gtgagccttt tctactgagt cgaccgctcg cgctttcttt gatcggggtt
      301 tatttcgcct ttcttttcta cagtggattg cgtttggggg ctgcctggta tgccacgagg
      361 cggatgaagc tgaatgcagt tcatttagaa gatcaacgtc tcactcagat cgtcgagaga
      421 tgtgcgactg ccattaagac gaacgcagtt aacgttcgtc tttgctcgac agagtccgta
      481 tcggttccca tcaccattgg tatgttcaat ccgataatca ttcttcctcg cctgttactc
      541 aacgagggaa atgaggaagt ccttacctcg gcgattggcc atgaactgat tcacattcag
      601 cgtcgcgact atgccttcaa cctcgcttac gagcttttgt tcctgccgct ttcgtttcat
      661 ccggccgcgg cattaatccg acgtcgaatt cgtcagactc gtgaactctc atgcgatgaa
      721 ttggtggcgg agcgaatcct aaatgcggaa gtctatgccc gctctctcgt gcaactggct
      781 agcggaaccc caacactgcg tcgtctctcc attacaacaa ccgtaggcat cgctgatgcc
      841 gacatactgg aggctcgtat catgtcacta ttaaacaaaa caaaggttga cacacctcga
      901 aagagaatgc tgctgattgc ggtttcgttg ttgctcctcg tgccgtgtct tgctgccggt
      961 tcgtttgcga tgaagtttga tctcaaaagg tcggaagctg ttaatcaaga gccatcgcaa
     1021 caggaaaagc aacgccgtga ggaggagacg gttaagtttg cgcgctcctt tacggtcgat
     1081 agcgacgaac gcgcaatgaa agaaagaatg gaaacggatc aggcgtttcg cgaaaaaatg
     1141 atcgccagac aggaactcga aatgaaaatg c
//
LOCUS       DATCGC010001451         1854 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_23942, whole genome shotgun sequence.
ACCESSION   DATCGC010001451 DATCGC010000000
VERSION     DATCGC010001451.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1854)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1854)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1854
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23942"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1494
                     /locus_tag="VIJ87_13925"
     CDS             <1..1494
                     /locus_tag="VIJ87_13925"
                     /inference="COORDINATES: protein motif:HMM:NF014950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY5445533.1"
                     /translation="NMELHKPIYIEEASYAAAENVIPLCELAKGFEEAGEFDQAVEIL
                     QPFWTKFGERPETAGLSEEASAELLLRTGTLTGWLGSAKQLAGAQELAKDLISESASL
                     FAGLGLQEKAAEARVDLAICYWREGGLDEARITLKLVLDSLENKNSEQRLRALLNSAI
                     VEKVATRDVEALRIYKEAEPLFAQSTNHALKGKFHNSHATLLRSLGSSENKPDYIDAA
                     LMEYTAAAFHFEEAGHKRFQGRVENNVGYLFSTLGKFAEAHEHFDRAYNLLRAVGDVG
                     SAALCQDARAQTFLLEGRNVEAEKAASSAVRTLSQGGEQTILAEALTNHGKALARLDQ
                     HQAAKVTLDRAIEVSRNAGDPDRGGIASVSVIEELGQQLSGAALLTYYRMAESLLAES
                     QNRGLKIRLGECARRVMAVNFDSADTGSEPLVMGDGFSLDAEVMRYEGNLIRQALESS
                     GGSVTRAARLLGVTHQGLAFILNGRHNNLMSVRTPVKRRRKSIIRYH"
     gene            complement(1504..>1854)
                     /locus_tag="VIJ87_13930"
     CDS             complement(1504..>1854)
                     /locus_tag="VIJ87_13930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445534.1"
                     /translation="EAVVRVWPLRVTNGTGAAGGLLGVGFGVGVGCAVVDVACGFTAV
                     GGFRRTVPRGVFCAKEEEVARSSVKAKGAIAVFMMLLKVDSYMREPIIKELMLEHKYT
                     NSAAFDKAALSELS"
BASE COUNT          474 a          472 c          488 g          420 t
ORIGIN      
        1 aatatggagt tacacaaacc aatttatatc gaagaggcca gttatgcggc cgctgaaaat
       61 gtgatcccat tatgtgaact agcgaaggga ttcgaagaag cgggggagtt tgaccaggca
      121 gtcgagattc tacagccttt ctggaccaaa tttggtgagc ggccagaaac tgccggtttg
      181 tcagaggaag ccagtgcgga gctattgttg agaacgggaa ctctgaccgg ctggttgggt
      241 agtgcgaagc aactcgcagg cgctcaggaa ttagcgaagg atctcattag tgaaagtgcg
      301 tctctctttg caggtcttgg tttgcaagag aaagctgctg aagctcgagt ggatttggcg
      361 atttgttatt ggcgcgaagg tggacttgat gaggccagaa tcacgctcaa gcttgtgctc
      421 gatagcctgg aaaacaagaa cagtgaacag cgactcagag cactcttgaa cagtgcaatc
      481 gtcgaaaagg ttgcgacccg agatgttgaa gcgcttcgca tttacaaaga ggcggaaccg
      541 ctatttgcgc aaagcaccaa ccacgcactt aagggtaagt ttcacaactc acacgctacg
      601 ctgctgcgca gcctcggtag ctctgaaaat aagcccgact atatcgacgc agcgttaatg
      661 gaatacacag ctgcagcttt ccactttgaa gaggcaggcc acaagagatt ccagggacgt
      721 gttgagaata acgttggcta tctcttttct acgctcggga agtttgcgga agcacatgag
      781 cattttgatc gagcttataa cttgctgagg gccgtaggcg atgttggtag tgccgcgcta
      841 tgccaagatg ctcgagccca gactttcttg cttgaaggtc gtaatgtaga agccgaaaag
      901 gccgcgtctt ctgcggtaag aactctcagc caaggtggcg aacagactat cctggctgaa
      961 gcactaacga accacggcaa agcactagct cgccttgatc agcaccaggc agcgaaggtg
     1021 accttggaca gggcaattga agtatcaaga aatgccggcg accctgaccg cggtggtatt
     1081 gcgtcggtaa gtgtgattga agaattaggc caacaactct cgggcgcagc gctgctcacc
     1141 tactaccgaa tggctgagtc gttgctcgca gagtctcaga atcgtgggct caagattcgc
     1201 ttgggtgaat gcgcacgccg cgtcatggct gtcaacttcg actccgcaga caccggctct
     1261 gagccacttg taatgggcga tggtttttcc ctcgatgccg aggtaatgcg ttatgaaggt
     1321 aacctgattc ggcaagctct cgaatcgagc ggaggcagcg tcacgcgcgc cgcacgttta
     1381 ctcggagtta cgcatcaagg gttggcattc attcttaacg gccggcataa caaccttatg
     1441 tctgttagaa cccctgttaa gcgtcgaaga aagagcatca tccgatacca ctgagtcact
     1501 aaatcagctg agttccgata gcgctgcttt gtcaaaggca gcgctattcg tgtatttgtg
     1561 ctctaacatt agttctttta ttatcggctc ccgcatatac gaatctactt tgagcaacat
     1621 catgaaaact gcgatcgccc ccttagcctt aacactactt ctggctactt cctcttcttt
     1681 tgcacagaaa accccgcggg gtactgtgcg acgaaaaccg ccgaccgcag taaatccgca
     1741 ggcgacgtca acaacagcgc aaccgacgcc aacaccaaac cctactccaa gcagaccacc
     1801 tgccgcaccg gttccgttgg tcactctcaa tggccaaact ctaaccactg cctc
//
LOCUS       DATCGC010001452         1713 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_419022, whole genome shotgun sequence.
ACCESSION   DATCGC010001452 DATCGC010000000
VERSION     DATCGC010001452.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1713)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1713)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1713
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_419022"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            140..1132
                     /locus_tag="VIJ87_13935"
     CDS             140..1132
                     /locus_tag="VIJ87_13935"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HEY5445535.1"
                     /translation="MSGVKSNFWLDRPTFVTGATGLVGGWLVRRLIDAGADVVCLVRD
                     WVPQSEFVRANLIQQTKVVRGDVRDQALLERTIGEYEIDTIIHLAAQTIVGIANRNPV
                     STFESNIAGTWSLLEASRRSPAVKQIVIASSDKAYGDHEVLPYSEEAPLQGRHPYDVS
                     KSCADLIAQSYATTFDLPVAVTRCGNFYGGGDLNWNRIVPGTIRSVLREQRPIIRSDG
                     KYVRDYFYAEDGAAANMVLAEALSQNRELRGQAFNFSNETQVTVLELVERLLNLMNSK
                     LEPEIRNEATNEIRHQYLSADKARQLLKWKPLFSLDEGLRRTIEWYRDFLGASV"
     gene            1129..>1713
                     /locus_tag="VIJ87_13940"
     CDS             1129..>1713
                     /locus_tag="VIJ87_13940"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEY5445536.1"
                     /translation="MNQPQSPVCRSCNATSLIPILNLGNTPLANALLAEEQLTEAEET
                     YPLELVLCPACALVQITETVPPEKLFREYLYFSSFSDTMLQHAESLASELIESRDLGP
                     NSLVLEVASNDGYLLQYYKQSNIPVLGIEPATNVARVAREDRGVPTISEFFGTELAER
                     LVANGQRADVIHANNVLAHVADLNGFVHGLELLLK"
BASE COUNT          406 a          444 c          467 g          396 t
ORIGIN      
        1 cactggaaag actggcagca gaccggcaat tggctgccta tcggcacgag ggcttctggc
       61 aatgcatgga cacgctgcgt gataagcggc tgcttgacaa cttgtggcag gaacggcgcg
      121 cgccatggaa agtttgggaa tgagtggagt caagagcaac ttttggctcg accgccctac
      181 gtttgtaaca ggcgcgacgg gtctcgtagg cgggtggctg gtgcgtcgct tgatcgatgc
      241 cggcgcagat gttgtttgcc tggtacgcga ctgggtaccg caaagcgaat tcgtacgcgc
      301 taatcttatc caacagacga aagtggtgcg gggcgatgtt cgggaccagg cactccttga
      361 gcgtacgatt ggtgaatacg agattgacac gataatccat ctcgcagcgc agacaatcgt
      421 gggtattgcc aatcgcaatc cagtctcgac ctttgaaagc aacatcgcgg gcacgtggtc
      481 acttttggaa gcctcccgac gcagcccggc cgtcaaacag atcgttattg cgtcgtcaga
      541 taaagcttac ggcgatcacg aagttctacc ttacagtgaa gaagctcccc tgcagggtcg
      601 ccacccgtat gacgtcagca aatcctgcgc tgatctgatt gcccaatcgt atgcaaccac
      661 gtttgaccta ccggtagctg tgacgcgatg cggaaacttc tatggtggcg gagatctgaa
      721 ttggaaccgc atcgtgcccg gcacgattcg ttcagtcttg cgtgaacaac ggcccattat
      781 tcgttcagat ggcaagtacg ttcgcgacta cttctacgcc gaggacggcg ccgcggcaaa
      841 tatggtgctg gctgaggcgc taagccaaaa ccgcgagctg cgtggccagg cattcaattt
      901 ctcgaacgag acacaggtaa cggttttgga gttggtggaa cgactgttga acttgatgaa
      961 ctcaaagctc gaacccgaga tacgaaacga agcgacgaac gaaattcggc accaatatct
     1021 aagcgctgat aaagctcgcc aattgcttaa atggaaacct ctgttttcat tggacgaagg
     1081 cttacgacgg acgattgagt ggtatagaga cttcctcgga gcgtctgtat gaaccaacct
     1141 cagtcgcccg tgtgccgctc atgcaatgcg acttcactta tcccgattct caatcttggt
     1201 aacactcccc tagccaatgc gctcctcgct gaagagcagt tgactgaagc ggaagaaacc
     1261 tatccgctag agcttgtttt gtgtcctgct tgcgcgctgg tacaaatcac tgaaacagtt
     1321 cctcccgaaa agcttttccg agagtatctg tacttttcat cattctccga caccatgctg
     1381 caacacgcag aatcgctggc ctccgagctt atcgaatcac gcgatctcgg cccaaatagc
     1441 ctggtgttgg aagtggcgag taatgatggc tacctgcttc aatactataa gcaaagtaat
     1501 atccccgtgt tgggtatcga gccggccact aatgtagctc gtgtcgcccg tgaagatcgt
     1561 ggcgttccaa ctatcagcga gttttttgga accgagttgg ctgaaaggct tgtcgcgaat
     1621 ggccagcgcg cagatgtaat ccatgccaat aatgtgctgg cccacgtcgc tgatctaaac
     1681 ggattcgtcc acggacttga gttgttgttg aag
//
LOCUS       DATCGC010001453         1467 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_487036, whole genome shotgun sequence.
ACCESSION   DATCGC010001453 DATCGC010000000
VERSION     DATCGC010001453.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1467)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1467)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1467
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_487036"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(55..1224)
                     /locus_tag="VIJ87_13945"
     CDS             complement(55..1224)
                     /locus_tag="VIJ87_13945"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY5445537.1"
                     /translation="MPFATPTAVKGWSEGSLSAKGSRKRSDHEGAEFITPHSYPTLIG
                     SSPIMQKLFAVIERVAPNDSSVLLVGATGTGKELVARAIHDKSPRRNGPFVDINCSAI
                     PEGLIEAELFGHQRGTFTGAHESRCGLFEKASGGTLFLDEVDALNLSAQAKLLRVLQE
                     KTVRRIGARANVAIDVRIVSATNCDLAQAVAEGRFRPDLYYRLRVLPLQLPELCTRSG
                     DIELLIDHFLKLKAGHSVGEMPKFTPEAVRALKEYPWPGNVRELENAIEYSLVINIDD
                     VIGLDDLPLEIAQSRPSTNGNDLKQLLKAYIDDTVPLAEIEKRYILTVLQQFGGNQVQ
                     TAAALGIDRSKLYRRLKQYGVMAVRFLQEEELDGMQLLSKEQPERQVVTPTFREQ"
BASE COUNT          330 a          373 c          389 g          375 t
ORIGIN      
        1 ctagatgccg caagatccag aagctgcaaa ttcaatctgc aatctgaaat gctttcactg
       61 ttcccgaaag gttggagtca caacctggcg ctccggctgt tccttggaga gcaactgcat
      121 cccatcaagc tcctcttcct gaaggaaccg cacagccata acgccatact gctttagacg
      181 tcgatatagt ttgcttcgat cgatgccaag cgctgctgct gtttgaacct ggttgccgcc
      241 gaattgttgt aacactgtca gtatgtagcg cttttcaatc tcagcaagcg gtaccgtgtc
      301 gtcaatgtac gccttgagta gttgcttcag atcgtttccg ttcgtacttg gtcgcgactg
      361 ggcaatctca agaggtagat cgtccagacc gattacgtcg tcgatgttaa tcactaaaga
      421 atactcaatc gcattttcaa gttcgcggac gttacctggc cacggatact ccttcaacgc
      481 tcgcactgcc tccggagtaa acttcggcat ctcgcctacc gagtgaccag ctttgagctt
      541 aaggaaatga tcgattagaa gctcaatgtc tcccgaacga gtacaaagtt caggcagctg
      601 aagtggtaga acgcgcagcc ggtaatagag atccggtcga aagcggccct cagcaacggc
      661 ctgagccagg tcgcagttag tcgcggagac tattcggaca tcgattgcga cgttggcccg
      721 tgcgccgatc cggcgaacag tcttttcctg aagtacacgc agcagtttcg cctgagccga
      781 aagattcagc gcatctacct catcgaggaa cagtgtgccg cccgatgctt tttcaaaaag
      841 accgcatcgg ctttcatgtg cgccagtgaa tgttccgcgt tgatgaccga atagctctgc
      901 ttcaataaga ccttcgggaa ttgcagagca attgatatca acaaacggac cgttgcgacg
      961 tgggcttttg tcgtggatgg cacgggcgac gagttctttc ccggtgcctg tggctccaac
     1021 tagcaggacg gagctgtcgt tgggagcaac gcgctcaatc actgcgaaga gcttttgcat
     1081 gatcggagaa cttccgatca gagtggggta actgtgggga gttatgaatt ctgcgccttc
     1141 gtggtccgat ctttttcgac ttcctttggc ggaaagactg ccctcggacc agcctttgac
     1201 ggctgtggga gtagcgaaag gcatattatt tactatttcc taaagcgcga gtatctgttg
     1261 gcctggcttc ctggaagggg ttcagagatg cggggctttg gatgtctcct ttctgcgtaa
     1321 gatgcaagag cggcaaaatt ggtccaacgt gtcatgctta ctctctcggc cgacgcaact
     1381 ggtaggaatt gtggcgtcgt gaatctgggt tccgatcaag tactgccggc taccgcttga
     1441 aagacaaact gcttgtttat ttctttg
//
LOCUS       DATCGC010001454         1309 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_487043, whole genome shotgun sequence.
ACCESSION   DATCGC010001454 DATCGC010000000
VERSION     DATCGC010001454.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1309)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1309)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1309
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_487043"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..326
                     /locus_tag="VIJ87_13950"
     CDS             <1..326
                     /locus_tag="VIJ87_13950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445538.1"
                     /translation="DITVEYPGVRYLATYEAAASETEARIEQRRFMAGTEIDGSIFKG
                     RVPLEVGSSYALRSIDNDRSDLLIAFQVVRKDDDGSAIIAWRLLKKYATTTLSKPKIA
                     ESIIR"
     gene            330..>1309
                     /gene="dnaX"
                     /locus_tag="VIJ87_13955"
     CDS             330..>1309
                     /gene="dnaX"
                     /locus_tag="VIJ87_13955"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF004046.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HEY5445539.1"
                     /translation="MSYQVIARKWRPQTFDEVTGQEAITRTLRNAIEHQRLHHAYLFS
                     GARGVGKTTSARLLAKALNCHKAKEPTPTPCRTDDPDQCPSCREISESRSIDVQEIDA
                     ASNTGVDNVREAIIGSVGIAPARDRYKIFIIDEVHMLSTPAFNALLKTLEEPPPRVVF
                     VMATTEKHKVPETILSRCQQFEFRTIATAKIFERLKLIAKAEGISIPDDALREIARTG
                     DGSMRDAQSSLDQVISFAGDKIKKEDVEMALGVAGADILSRIMDAVAENKPAEAIKVV
                     DDVVMRGHDLRNFCRDLLAHFRDLLVTKVSGSEELLETAVCEPQELKRQAA"
BASE COUNT          333 a          337 c          365 g          274 t
ORIGIN      
        1 cggacatcac ggtcgaatat cccggagtca ggtacctcgc aacgtatgaa gccgccgcat
       61 cagaaacaga agcacgaatc gagcagcgac ggttcatggc tggcactgag attgatggaa
      121 gtatcttcaa aggaagagtc ccgttggagg tcggttccag ttacgccctg cgctccattg
      181 acaacgatcg ctcggacctg cttattgcgt tccaggttgt tcgtaaggat gatgatggca
      241 gcgcaatcat tgcgtggcgg ttgttaaaga agtacgccac gacaactctg tccaagccga
      301 aaattgcgga gtcaataatc agataattca tgtcctatca agtcatcgcg cgtaagtggc
      361 gcccacaaac cttcgacgaa gtaactggcc aggaagcaat cacgcgcaca ctgcgcaatg
      421 ctattgagca tcagcgactt catcacgcat acctcttttc aggcgctcgt ggcgtaggca
      481 aaacaacgag cgcacgcctc cttgcgaagg cactcaactg tcacaaggca aaagagccga
      541 cgccaactcc ctgtagaact gacgatccag atcagtgtcc gtcttgtcgc gagatcagcg
      601 agagtcgatc gattgatgtg caggagatcg atgctgcttc aaatacgggc gttgacaacg
      661 ttcgtgaagc aatcatcggg agcgtgggaa tcgcaccggc gcgcgatcgc tacaagatct
      721 tcattatcga cgaagttcat atgctttcca cgccagcttt caatgcgttg ctgaagacgc
      781 ttgaagaacc gcctccgaga gtcgtgttcg tcatggctac gactgaaaag cacaaagtac
      841 cggaaacgat actctcgcgc tgtcagcagt ttgagtttcg cacgatcgcc actgcgaaga
      901 tatttgagcg cttgaagctg atcgctaagg ctgaagggat ttcgattcca gatgatgcat
      961 tgcgcgagat tgcgcgaacc ggtgacggct caatgcgcga cgcccaatca tccctcgacc
     1021 aggtaatcag tttcgccggc gacaagatca agaaagaaga cgtggagatg gcgctcggcg
     1081 tggccggcgc tgacattctc tcgcgcatca tggatgctgt tgcagagaac aaaccagcgg
     1141 aggcgatcaa ggtagttgac gacgtggtga tgcggggaca tgacctgcgc aacttctgtc
     1201 gggatctgct ggcgcacttc cgtgatctgc tggttacgaa ggtgtcaggc agcgaagaac
     1261 tacttgagac ggcagtttgt gaacctcagg aattgaaacg acaggcagc
//
LOCUS       DATCGC010001455         1239 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_88421, whole genome shotgun sequence.
ACCESSION   DATCGC010001455 DATCGC010000000
VERSION     DATCGC010001455.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1239
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88421"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            460..>1239
                     /locus_tag="VIJ87_13960"
     CDS             460..>1239
                     /locus_tag="VIJ87_13960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445540.1"
                     /translation="MRTNLAKDFVPTIIDSRPLLPRLASELNALEHELKLAWPEFKRH
                     PLHAGVRIAQTAVRRGRQILLAPHVLAALTTVALVVVIVLLAERTLPRTIASAEPSEL
                     EHASVMTIINLKDRDDDGIGKGGNGRVGFQQNRGEGSGEVRQRSQGGGGGGNHYHLPS
                     QTGKLPPPSNIQASIPTSPPIHTRSLPVAGIDIDPALWKDIKAPVFGDPRSTSTAQSK
                     GPGDGGGIGSNQGLGIGEGKGPGVGPGNNGNMGDGNKQTGCC"
BASE COUNT          323 a          326 c          304 g          286 t
ORIGIN      
        1 caggaatatc aaactgcgat ccggcaaagt tctgactacg cgttggctta ctacaatctg
       61 ggcttgacct acaaggcgat tggaaaccga aatctggcta tggagcagta ccgagtattg
      121 cagcggctcg acaaagatcg agcgcagaaa ttgttgaatc agattaacaa ctaagtgatc
      181 tcaaatctca aatctcaaat ctcagattgc aggtttcaaa tttgattgtc tgagatctga
      241 tatgtgagat ctgaaatctg agatcctcac cgtaaccttt cactatctca cggtaataaa
      301 tctccagagg cctacttaag aagcttttct gcatcaaaca ggctgttgct ttgcaacgtg
      361 gtcctcaacc tgtctcccta tccttaattc caattcagtt tcgcactgcc gcaggttacg
      421 tgtgcctgca ccaaccagaa ttgcaaacga ggtatccaga tgagaaccaa tctcgcgaaa
      481 gacttcgtcc ccacgatcat cgactctcga ccactgcttc ccaggctcgc atctgaactc
      541 aacgcacttg agcacgagtt gaagttagcg tggcccgaat tcaagagaca tccgctccac
      601 gctggtgtcc gcattgctca gacggctgtt cgacgaggac gccagattct gttggcgccc
      661 catgtactgg cggcactaac gacagttgct ttggttgtcg taattgttct gcttgccgaa
      721 cgaactttgc cacgcacaat cgcatcggca gagccatccg aactcgaaca cgcgtcagtg
      781 atgacaatca tcaatctgaa agaccgtgac gatgatggaa tcggaaaagg tggcaacggt
      841 cgcgtgggat ttcaacaaaa tcgcggcgag ggatccggtg aagtcagaca acgttctcaa
      901 ggtggcggtg gcgggggcaa tcattatcac cttccttcac aaacagggaa gctgcctcct
      961 ccttccaaca tccaggcgtc aattccgacg agtccaccga tccatacgcg gagtcttcca
     1021 gtcgcaggta tcgatatcga tcctgcgctc tggaaagata ttaaggcacc cgtctttggt
     1081 gatccgcgtt ccacttccac tgctcaatca aaaggaccgg gcgatggtgg cggaatcggt
     1141 agtaaccaag gccttggtat cggcgaaggc aaagggcccg gagttggtcc tggcaacaat
     1201 ggaaacatgg gcgacggtaa caaacagaca ggttgttgc
//
LOCUS       DATCGC010001456         1061 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_386233, whole genome shotgun sequence.
ACCESSION   DATCGC010001456 DATCGC010000000
VERSION     DATCGC010001456.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1061)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1061)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1061
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_386233"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..687
                     /locus_tag="VIJ87_13965"
     CDS             <1..687
                     /locus_tag="VIJ87_13965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445541.1"
                     /translation="AEQVVESVILVYGSRPGLEHIRRNGIERGRITKFNAQGAAEEAN
                     YERRFVRGESLEKDKVRLDQKLPTMEYSLVYGGGKLWGLINGAAFTPRQDAASNFLSQ
                     HLHSIDSLLRYKENGSTITLVGKEQQKGLDLYVIELLDKDKLKTRYYISSKTLRILWL
                     EYEDTPSSGGTTPVKYTRRFMDYRAVQQTLVPYHTILLEDGRQTQEVQILTVTYGSKL
                     DESIFTNPEA"
BASE COUNT          284 a          279 c          261 g          237 t
ORIGIN      
        1 gccgaacaag tagtagagtc tgtaatcctg gtttacggaa gccgacccgg cttggaacac
       61 atccgtcgga acggaatcga gcgcgggaga atcacgaaat ttaacgccca gggcgccgct
      121 gaagaagcga attatgaacg acgttttgtt cgcggagaga gtctggagaa agacaaagtt
      181 cggctcgacc aaaagctgcc cacgatggag tattcactcg tttacggggg cggcaaactt
      241 tggggtctaa tcaatggtgc cgcctttact ccaagacaag acgccgcctc taatttcctt
      301 tcacaacacc tgcacagtat cgactcgtta ctccgttaca aagagaatgg ctccaccata
      361 acgctcgtag gcaaggagca gcaaaaaggg ctggacttgt acgtaatcga gttgctcgac
      421 aaggacaaac tcaaaacgcg ctactacatc agcagtaaga cattgcgcat cctgtggttg
      481 gaatatgagg acactcccag ttctggtggc actacgccgg tgaagtacac gagaaggttt
      541 atggattacc gtgctgtcca gcagaccctc gtcccttacc acacgatcct gctcgaagat
      601 ggacggcaaa cacaggaagt ccaaattctc acggttacct acggctccaa attggacgaa
      661 tcgatcttca cgaacccgga agcttaaaag aattgcggaa atgcggagat tacggaattg
      721 cgtgatttct agcgtttgcc gttcagttag taaagcatcc cgcaatcctt tattccagta
      781 caggttcatt ttgagcaagg cttagtcagc tgaatcctac ttctcattct caccgtggct
      841 ttagcccggt gaaacgcgct gccaacgacc ttggaaaccg tttcaacgtt tatccaatgc
      901 ccgctgaggc aaacagttca aaccgttctc attctttacc gctgccatag catcgggcta
      961 aagccacggt gagaatgaga ggaagttcgc gaggacacta cgcctgctca aaatgaacca
     1021 gtacccagcg tcggactcac ttgcctgcct ggttcttgcg c
//
LOCUS       DATCGC010001457         1259 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_188892, whole genome shotgun sequence.
ACCESSION   DATCGC010001457 DATCGC010000000
VERSION     DATCGC010001457.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1259)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1259)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1259
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_188892"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..637
                     /locus_tag="VIJ87_13970"
     CDS             <1..637
                     /locus_tag="VIJ87_13970"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY5445542.1"
                     /translation="TKNRRFLPASDELQKRRADAVKQLGETPADQTDKRAQFERSIRR
                     FDALLTIKLTNPTVTFSSGTVHLHLGQREVVLFTLPGHTGGDVLAYVPDANVVFTGDM
                     GWRKTLPNLVDATVNDWIPSLDTLLQKYPTAKFVPGHGEVATGEEIREFRDYLDDLRT
                     RVKKAIADGLSLDQAKQQLKLPEKYKAFGFQNFATPNVEDMYKELAGTKNK"
     gene            755..>1259
                     /locus_tag="VIJ87_13975"
     CDS             755..>1259
                     /locus_tag="VIJ87_13975"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEY5445543.1"
                     /translation="MSDQLVILGIAGSLREGSFNRAVLRAAQTLVPEGATLETFDIKG
                     LPGFSQDDEANPPAQVVELKQRIRAADAILFVTPEYNYSVPGVLKNAIDWASRPYGDS
                     AWNKKPVAVMGASVGTLGTARAQYHLRQMFVFLNMHPVNQPEVMISGAHKHFDDQGNL
                     TDEVAKKL"
BASE COUNT          338 a          311 c          340 g          270 t
ORIGIN      
        1 caccaagaat cgtcgtttcc ttccagcgag cgatgaactg caaaaaagac gtgccgatgc
       61 agtcaagcag ttaggcgaaa ctccagccga tcagaccgac aagcgcgcac aattcgaaag
      121 atcgatcagg cgcttcgatg cgttgctgac aattaagtta acaaatccaa ccgtcacctt
      181 ttcgagcggt acagttcact tgcatcttgg gcaacgcgag gttgttctat tcactttacc
      241 cgggcacacg ggcggtgatg tgctcgccta cgtgccggac gcaaatgtgg tgtttacggg
      301 cgacatggga tggcgaaaaa ccctgccgaa tcttgtcgat gcaacagtca acgactggat
      361 accgtcgtta gacacgttgc tccagaaata tccgaccgcc aagttcgttc caggacatgg
      421 cgaggtggcg acgggggaag agattcgcga gtttcgcgac tatcttgatg atctcaggac
      481 gcgtgtgaag aaggcgatcg cggatgggct gagtcttgat caggcaaagc agcaattgaa
      541 gctgcctgaa aagtacaaag cgttcgggtt tcagaatttc gcgacgccca atgtggaaga
      601 catgtataag gaattagcgg gaacgaagaa taagtaaatc agccacagat caatacggat
      661 gaaacagatc acttagaagt gaccccgcaa tctgaattct tgatctgtga gatctgtgtt
      721 tatctgtggc ccaaggtcag ggaggaataa aacggtgagc gatcaacttg tcatactcgg
      781 aattgccggc agtctgcgcg aaggctcatt taatcgcgct gtactccgcg cagcgcaaac
      841 gctcgtacca gaaggcgcga cgcttgagac tttcgatatt aagggcctac ccggctttag
      901 ccaggacgac gaagcaaatc cacctgcaca agttgtcgaa ctcaaacagc gaattcgcgc
      961 cgcagatgcc attctgtttg tcactcctga atacaattac tccgtgccgg gagtgttgaa
     1021 gaatgccatc gactgggcgt cacgaccgta cggcgacagt gcctggaaca aaaaaccagt
     1081 tgccgtcatg ggcgcttccg tcggtacatt gggaaccgcg cgcgcgcagt atcacctgcg
     1141 gcagatgttt gtgtttttaa acatgcaccc ggtgaaccaa cctgaagtca tgatctccgg
     1201 cgctcataag cattttgacg accagggaaa tctaacggat gaagtagcga agaaattga
//
LOCUS       DATCGC010001458         1212 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_188917, whole genome shotgun sequence.
ACCESSION   DATCGC010001458 DATCGC010000000
VERSION     DATCGC010001458.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1212)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1212)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1212
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_188917"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            473..>1212
                     /locus_tag="VIJ87_13980"
     CDS             473..>1212
                     /locus_tag="VIJ87_13980"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY5445544.1"
                     /translation="MIGTTISHYHIFSKLGQGGMGEVYLAEDTKLDRKVALKLLPDSV
                     ASDQERMRRFVQEAKSASALNHPNIITIYEIGEIDSRHFIATEFIDGETLRKRMRHGH
                     LKLIELLEIAIQTTGALAAAHAAGIIHRDIKPENIMVRHDGYVKVLDFGLAKLTEPQG
                     FTADTEAPTKALVDTGAGIVLGTLVYMSPEQAKGQRVDGRTDLWSLGAVIYEMVTGHA
                     PFEAETPSEVLALILNKEPALLARYDREA"
BASE COUNT          326 a          306 c          306 g          274 t
ORIGIN      
        1 tcgcgccgca acgccaaaag agagaaagaa gatgcaaacg agtgagagtc tattggatag
       61 aggcttcatt ggtgcattag tccattcaga acgaatatca gtctaatccg aatcgtgtac
      121 tctgcggatg aaattcagac ctctgctgat ttcaagctag ctgattggat catattggtc
      181 tagaataaac cctatccaag ggtcgttttc caaccgtttc tttggctctt cgtaaccaga
      241 tcagtttttt ctgacgggtg actgtcagct aaagcaagcc catacccttc tagtacgctg
      301 tacggattaa tcgattagga cagccgccgc cccaggcttc cagtgttacc gatagttcca
      361 tcgtaatctt gtttgaacca gatcagacaa gcaccagaat tcattcatat caagacgaaa
      421 gacaaggacg ctgcgaaaga atgcgcagca ggtttgtttg gagcacaacg caatgatagg
      481 aacgacaatc tcccattacc acatcttctc caagctcggc cagggtggca tgggagaggt
      541 gtatcttgcc gaggatacga agcttgatcg caaagttgca ctgaaactct tgcctgattc
      601 ggtcgcgtcg gatcaggaac gcatgcgtcg cttcgtacag gaagctaagt ctgcttccgc
      661 gctcaatcat ccgaacatca tcacgatcta tgagattggt gagatcgact ctcgtcactt
      721 catcgcaaca gaatttatcg acggggagac actcagaaag cgaatgaggc acgggcactt
      781 aaagctcata gagcttctcg agatcgccat tcaaacaaca ggtgcattgg ctgcggcgca
      841 cgcggccggc atcatccatc gcgacattaa gcctgaaaac atcatggtca ggcacgacgg
      901 ttacgtcaaa gtgttggatt tcggactggc caagctaacc gaaccccagg gctttactgc
      961 tgacactgaa gcgccgacga aagccctggt cgatacgggt gcaggcatag ttctcggaac
     1021 gcttgtttac atgtcgcccg aacaggcaaa aggacaacgt gttgacggac gcactgatct
     1081 atggagtctc ggggcagtta tttacgagat ggtgacagga catgcgccgt ttgaggcgga
     1141 gacacccagc gaagttctcg ccctcatact caataaagaa cccgcattgc tggcacgcta
     1201 cgaccgagag gc
//
LOCUS       DATCGC010001459         1011 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_188970, whole genome shotgun sequence.
ACCESSION   DATCGC010001459 DATCGC010000000
VERSION     DATCGC010001459.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1011)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1011)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1011
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_188970"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(22..>1011)
                     /locus_tag="VIJ87_13985"
     CDS             complement(22..>1011)
                     /locus_tag="VIJ87_13985"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF025024.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008198 - ferrous iron binding [Evidence
                     IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HEY5445545.1"
                     /translation="KRLVLKSWIDCMGFFRMVRDSKFARMPILSAELFDKANSYRKQF
                     ETAKPFRHILIPQFFAPAIAEAMLAEFPVPRENEMINEFGVKNRKFACRDVRSIGPTY
                     CLVDDYISSPEFAQIMGHITGIEGLLYDPVYQGAGTHENLSGQGMDTHVDFNLHPATG
                     HHRRFNAIIYLNKDWKEEWGGNLELHTNPWDFENDQIVSYPPLFNHCILFETNEHSWH
                     GFQRLQMPDGREISRKSFTIYMYTKERAVNEIAARHGTIYVQPGPPKRFQAGYTLTAD
                     DIQDLKIAFVRRNGFLQGMYHRESQLLTQIDNLTKAVEHLKKVQQSNSEAARK"
BASE COUNT          234 a          251 c          260 g          266 t
ORIGIN      
        1 cttccttcgt ctttctcgat gttactttcg ggccgcttcc gagttggatt gctgcacttt
       61 tttcaagtgc tccactgcct ttgtcaggtt gtcgatctgc gtgagtagct gcgattcacg
      121 atggtacatt ccctgaagaa acccgttgcg ccgcacaaag gctatcttga gatcctgtat
      181 atcgtcggca gtgagagtat atccggcttg gaaacgtttg ggcgggcctg gctgaacata
      241 tatcgttcca tgcctggccg cgatttcgtt caccgcgcgc tccttggtgt acatgtaaat
      301 agtaaaagac ttgcgtgata tttcacggcc gtcaggcatt tgaagccttt gaaaaccgtg
      361 ccaggagtgc tcgtttgttt caaaaagaat gcagtgattg aacagcgggg gataggaaac
      421 gatctggtcg ttttcaaagt cccaaggatt ggtgtgaagt tccagatttc ctccccactc
      481 ctctttccag tccttattca gataaatgat tgcgttgaac cggcgatggt gcccggtcgc
      541 cgggtgcagg ttaaaatcaa cgtgcgtatc cattccctgc cccgacagat tttcgtgggt
      601 gccagcgccc tgatataccg gatcatacag caagccctcg attccagtga tgtgccccat
      661 aatctgggcg aactcaggcg aggaaatgta gtcgtcaacc aagcagtaag tcggcccgat
      721 tgaacgaaca tcgcggcagg caaactttcg attctttact ccgaactcat ttatcatttc
      781 gttctcgcgt ggaacaggaa actcggccag catcgcctcc gcgatagctg gagcgaaaaa
      841 ctgtggaatc aggatgtggc gaaacggttt cgcagtctca aattgcttgc ggtaagagtt
      901 agctttgtcg aataactcag cggaaagaat gggcatgcgt gcgaatttag agtctcgaac
      961 catgcggaag aatcccatgc agtcaatcca cgatttcaag acgagccgct t
//
LOCUS       DATCGC010001460         1494 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_152868, whole genome shotgun sequence.
ACCESSION   DATCGC010001460 DATCGC010000000
VERSION     DATCGC010001460.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1494)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1494)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1494
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152868"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1383)
                     /locus_tag="VIJ87_13990"
     CDS             complement(<1..1383)
                     /locus_tag="VIJ87_13990"
                     /inference="COORDINATES: protein motif:HMM:NF016424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HEY5445546.1"
                     /translation="MRTAYRALRSTLPVLIVFVLCLLSGDPLKGQTNNQLPSPTGQIN
                     DFAGVVDPQSKGRLESLLANLKAKTKVAFYVVTVDTTGGQDIFKFSQELAASWNIGSK
                     TSSTKTLLLVISVGSKTSFTQFSRLAQADLPEGVLGEMSQRMRTPLSAGRFSEAIDEG
                     VLVFVSALAEKHGLAVRDLDKPVGTADAAKVAEVPTATEQSSDPPVTRPRVVKETKPS
                     ETETTTQPAATEPQPTTTETTSQRTPTESTPQPIPTDISQPATAESTSKPTTESVPES
                     TAPKTKQTEKRTAKAPVRDVAKPTKNSSSSAKLVTPAPPPVDDEAEAEEVELTLTLPL
                     PKRAAKLKTFLETHPDSKARPRATELLISTHAGLGDQYLKAGDIDAGVKQLLSAIEEA
                     DVAISDQLFFGVISQIPSNLYLRGQADAALKAATNIETKFGNDPKRLLNVAGFYVGIE
                     RGVEAARIAEL"
BASE COUNT          302 a          373 c          411 g          408 t
ORIGIN      
        1 gagctccgcg attcgtgcag cttcgactcc gcgctcaatt cccacgtaaa aaccggcgac
       61 gttcagtaga cgtttcggat cgttaccgaa ttttgtttcg atattggtag cggccttgag
      121 cgccgcatca gcctgaccac gcaggtagag atttgaaggt atctgtgaga ttacaccgaa
      181 aaacagttgg tccgagatgg ccacatctgc ttcttcgatg gcactcaaga gttgtttcac
      241 tccggcgtca atgtccccag ctttgaggta ctgatcacca agcccggcgt gggtgctaat
      301 tagcaattcc gtggcgcgtg gtcgtgcttt tgaatcgggg tgagtctcaa gaaaagtctt
      361 cagctttgct gctcgtttcg ggagtggcaa cgtcagggtc agctcgacct cttcagcttc
      421 agcttcgtca tcgacaggtg gcggcgcggg cgtaacaagc ttcgcagaac tcgagctgtt
      481 cttcgtcggt tttgcaacgt cacggacagg tgccttggct gttcgttttt cagtttgttt
      541 tgtcttggga gcagtcgatt ccggaacgct ctcagtcgta ggttttgatg tgctctcggc
      601 cgtagcgggt tgcgaaatgt cggttggaat cggctgcgga gtactctcag tcggagtgcg
      661 ctgggaagta gtctcagtcg tagtgggttg cggttccgtt gctgcgggct gggtcgtcgt
      721 ttctgtttct gacggctttg tttccttcac cactctcggg cgagtcaccg gtggatcgct
      781 agactgttcc gtggcagttg ggacttcggc aaccttggct gcatcagccg ttcctacagg
      841 cttatctaaa tcgcgaactg ctagaccatg tttctcagct aacgcgctca cgaatacaag
      901 cacaccttca tcaattgctt ctgaaaagcg tccggcactg agcggtgttc gcatgcgttg
      961 cgacatctct cccaaaacac cctcggggag gtcagcttgc gccaacctgc taaactgcgt
     1021 gaacgacgtc tttgatccta ccgagatgac aagcaagaga gtcttggtgc tgctagtttt
     1081 cgatccgatg ttccatgacg cagccagttc ttgtgagaac ttgaatatgt cttgaccgcc
     1141 cgtcgtgtct acagttacca cgtagaatgc aactttagtt ttagccttaa gattcgcaag
     1201 cagactttca agccggccct tactttgtgg gtcgaccaca cctgcgaaat cgtttatttg
     1261 accggttggt gatggaagct gattattcgt ctgtcccttg agcggatcgc cgctcaacag
     1321 gcacagcacg aaaacgatca atacaggcaa tgtagatcgc aaagctcgat aagcggttct
     1381 cattaacatt ggttttgcta aatgcgtttc gggtgaaaaa tgcattgtcg ggtattgtgg
     1441 ggggacgatt cggcgtcatg ataccatcgc acctgattga cggcgagtag gtat
//
LOCUS       DATCGC010001461         2392 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_88503, whole genome shotgun sequence.
ACCESSION   DATCGC010001461 DATCGC010000000
VERSION     DATCGC010001461.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2392)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2392)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2392
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88503"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..673
                     /gene="pyrF"
                     /locus_tag="VIJ87_13995"
     CDS             <1..673
                     /gene="pyrF"
                     /locus_tag="VIJ87_13995"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF001273.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004590 - orotidine-5'-phosphate
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0044205 - 'de novo' UMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HEY5445547.1"
                     /translation="DKLVSELKEVVGMFKVGSQLFTTAGPGLVESILNAGNKVFLDLK
                     FHDIPHQVAGAARSAAELGVSLFTVHASGGTDMMHRAVDAISEAAERKQINRSKVIAV
                     SVLTSMDETALAQVGVEGSPASAVERLVKLARSAGVDGVVSSPEESESIRSYTGSDFL
                     IVTPGIRPTSSAQGSTNEDQKRVATPASALRSGADYLVVGRPITYAPDPVAAALAIVA
                     EMETA"
     gene            768..2318
                     /locus_tag="VIJ87_14000"
     CDS             768..2318
                     /locus_tag="VIJ87_14000"
                     /inference="COORDINATES: protein motif:HMM:NF022750.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3108 domain-containing protein"
                     /protein_id="HEY5445548.1"
                     /translation="MNLSLKPRIIFNLVILLFALAFPVLAQDGNGSASFPFSQAPYKV
                     GEHLTYDVSFSNFLSVAHVDIQVMSRGVYAGRDSLQLRAHAQTSGVVNVALFSLNNDY
                     TTYIDPENGLPFYSQEAIRDATRSNETSVELNPPAGTDAIPSKQKSFPGTYDFLSAFY
                     RVRALPLAIGASYTLTIRGDSQNNQVEFRVVGTEVVKTNVGSFNTIVTQIRVTGGTMF
                     KNARAYFTDDFRHVPVLITARVSGGDLKVELAGSEIIKPAVSSSPTPPVTAVATPTPT
                     PVPTPKPKPSPVQTVTNEDWPFAIGEQLNYQVFIGNSSTALGLATFQVKARSRYFDRD
                     ALYLSVTAQTTGAAARLFVANDRIESYLEPQSMLPFRTVINRAEGKNRINQTLLYDQN
                     RGSAATDKGQRIEIPVGTHDYLSFFYVIRTFNLTPQKRNAIAILVEGKPKTLFITALK
                     RETIELGQQKLKAIAISLSTDDPQSDKYQLRAWISDDRRRLPLRLTCQTELGALRADL
                     AIVPAAPQ"
BASE COUNT          599 a          628 c          587 g          578 t
ORIGIN      
        1 agataaactt gtctcggagt tgaaagaagt ggtcggcatg ttcaaggtcg gatcacaact
       61 gttcacaact gccggtcccg ggttggttga gtcgatcctc aacgcaggga ataaagtttt
      121 tctcgacctt aagtttcatg acattccgca tcaagtagcc ggcgcagcgc gatccgcagc
      181 cgaactcggc gtatcacttt ttactgtaca cgcaagtggt ggaaccgaca tgatgcatag
      241 agctgtcgac gctatttcag aggcagctga acgcaagcag ataaaccgtt caaaggtaat
      301 cgctgtcagc gtgttgacta gtatggacga gactgcgctc gcgcaagttg gtgtcgaagg
      361 tagtccagcc tcagcggttg agagattagt aaagttagct agaagcgccg gcgtcgatgg
      421 agtagtctct tcacccgagg agtcggagtc aattcgcagt tacactggaa gtgacttttt
      481 gatcgtgact ccgggaattc ggcctacatc gagcgctcaa ggttctacaa atgaagatca
      541 gaagcgcgtc gcaacacccg catccgcgct tcgttcaggg gctgattatc tggtggttgg
      601 caggccgata acatatgctc cagatccggt cgctgcggct ctggccatcg tcgccgaaat
      661 ggaaacagcc tgaatgtcgc ggaacaacca aaaggatgta acgtgtaata gataagatgc
      721 ggcgaggttt atttgccctg ctcttgattt gaaattatca tgcgacggtg aatctcagtt
      781 tgaaaccacg gatcattttc aatttagtaa tcctcctctt cgcactagca tttccagttt
      841 tagcccagga cggcaatgga tctgcgtctt tcccgttttc acaagcccct tacaaagtcg
      901 gagaacacct aacctacgac gtctcgtttt caaactttct atccgttgcc cacgtcgaca
      961 tccaggtaat gtcgcgcgga gtttatgcgg gccgtgactc tctccaactt cgtgctcatg
     1021 cacaaacttc gggagtcgtt aacgtcgcgc tgttttcgct caacaacgac tacacaacct
     1081 acatcgaccc tgagaacgga ctacccttct atagccagga agcaattcgc gacgcgacgc
     1141 gctcaaatga aacgagtgtc gaactgaatc cgcccgcagg cacggatgcg attccctcga
     1201 agcagaaatc cttcccgggc acatatgact tcttatcggc cttctaccgt gttcgcgcgt
     1261 tgcctctggc gatcggcgca agctacacgc ttacaattcg aggagactct caaaacaatc
     1321 aagtcgagtt cagggtagtt ggcactgaag tcgtcaaaac gaatgtcggc tccttcaata
     1381 ccatcgttac tcagattcgc gttactggtg ggacaatgtt caagaacgcg agagcttact
     1441 tcactgacga ttttcgacac gtgcccgtgt tgataacggc tcgcgtgagc ggtggggatc
     1501 ttaaggtgga attggcaggc tcagaaatta ttaagcccgc tgttagctcg tcgccaacac
     1561 ctcctgttac cgctgttgcc acaccaacac caactccagt tccaactccc aagcctaaac
     1621 cgagtcctgt tcaaacagta accaatgagg attggccctt cgcaattggg gagcaattga
     1681 actatcaggt ttttattggc aacagcagta cagcgttggg cctggcaaca tttcaggtaa
     1741 aggcgcgttc gcgatatttc gaccgggatg ctttgtattt gtcggtgact gcacagacaa
     1801 ctggtgcggc cgcgcgtttg tttgttgcca acgacagaat cgaatcatat ttggagccgc
     1861 aatcgatgtt gcctttccgg acggtgatca atcgcgctga agggaagaat cgcatcaacc
     1921 aaactctttt gtatgatcaa aaccgtggct ccgcagccac cgacaaaggc caaaggattg
     1981 aaatcccggt cgggacacac gattaccttt ccttcttcta cgtaatacgt acattcaacc
     2041 ttaccccaca gaagcgaaac gcaatcgcaa ttctcgtcga gggaaagccc aagacgctct
     2101 tcataactgc gctaaagcgg gaaacaattg aactcgggca acaaaaactc aaggccatcg
     2161 cgatctcgtt aagtacagat gatccgcaaa gtgacaagta ccaattgagg gcatggatca
     2221 gtgatgatcg acgacgccta ccgttgcggt taacttgtca aactgaactg ggcgctttga
     2281 gagctgacct tgcaatcgtt cccgctgctc ctcagtaaga ctccacgacc tggctttact
     2341 ctctggatat ttctcagcgt ccctgcagtg gagggatcta tacctattcc tc
//
LOCUS       DATCGC010001462         1359 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_189016, whole genome shotgun sequence.
ACCESSION   DATCGC010001462 DATCGC010000000
VERSION     DATCGC010001462.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1359)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1359
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_189016"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1338)
                     /gene="dacB"
                     /locus_tag="VIJ87_14005"
     CDS             complement(<1..1338)
                     /gene="dacB"
                     /locus_tag="VIJ87_14005"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: protein motif:HMM:NF014200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004175 - endopeptidase activity [Evidence
                     IEA];
                     GO_function: GO:0009002 - serine-type D-Ala-D-Ala
                     carboxypeptidase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine
                     carboxypeptidase/D-alanyl-D-alanine-endopeptidase"
                     /protein_id="HEY5445549.1"
                     /translation="MAVPPRTSNPSRTLAELQSRISEILAKPELSSAMVGVKVTSLDT
                     GKVLFENNANKLLRPASNMKIYTVATALDRLSPDFRFTTSVYALSRPDNSGVIKGDLT
                     IFGRGDPSLAARFNNGDYFKAIDDLASRIVASGVKRVDGDLIGDESYFVGPHYGSGWE
                     WEDLTWYYGAEVTPLTVNDNALDLFIKPGPGVGKLALITTGPPDPLLKIVNNVTTAPK
                     GTRREISISRDLGEDVITISGSIGLDDRGYTGGIGISHPAMLFVYLLRSSLAERGVTI
                     KGRSRTQNLNTEISVVANSQPPVAGMNSHLKQPAVEIATYQSPPFSLIAAQTLKPSQN
                     LYTELILRTLGKAAPPLLTTPSASTVGQTTEDLGLEAVKAFLKTAGIRPESLVLSDGS
                     GLSRNDMITAEASVQLLTFMSRHRYANVFRDALPIAGVDGTLRSRLKNTPAENN"
BASE COUNT          312 a          338 c          379 g          330 t
ORIGIN      
        1 attgttttca gcaggtgtgt tctttaatcg cgagcgtaat gttccatcga cgccagcaat
       61 tggtagtgca tcgcgaaaga cgttggcata acgatgtcga ctcatgaagg tcaacaactg
      121 cacagaagct tcagccgtga tcatgtcgtt tctcgagagt cccgacccat cgctcagcac
      181 cagcgattcc ggtcggatac cggcggtttt gagaaatgct ttaaccgcct cgagaccgag
      241 atcttcggtg gtctgtccga cggttgacgc acttggcgta gtcaacagag gtggcgcagc
      301 tttgccaagg gtcctcagaa tcagctccgt gtaaaggttc tggctgggct ttaaagtttg
      361 cgcagctatc agactgaagg gcggcgattg ataagtggcg atctcaacgg cgggctgttt
      421 cagatgggaa ttcattccgg ctacaggagg ctgactattc gctacgacgc ttatctcggt
      481 attgagattc tgcgttcgag agcgcccttt gatggttact ccacgttcgg ctaatgatga
      541 acgcagcaag tagacaaaca acatcgcagg atgtgaaatg ccaatgccgc cggtgtaacc
      601 acgatcatcc aaaccaatac tgccagatat cgtgatgacg tcttcgccaa ggtctcgcga
      661 gatggatatc tctcgtcgag tgccttttgg cgccgtagtc acgttgttca cgatcttgag
      721 taaagggtcc ggtggacccg ttgtgatcaa agccagcttg ccaacgccag ggcctggttt
      781 gatgaacagg tcgagtgcat tgtcgttcac cgtcagcggt gtgacttcag cgccgtagta
      841 ccacgttaga tcttcccact cccatccaga tccgtaatgc gggccgacga agtagctttc
      901 gtcgccaatc aaatcgccat cgacgcgctt cacacctgaa gcgacgattc gtgaggcaag
      961 atcgtcgata gctttgaagt agtcgccatt gttgaagcga gcggccagtg aaggatctcc
     1021 gcgtccaaag attgttaagt caccttttat gacgccggaa ttgtcgggcc ggctgagcgc
     1081 gtaaaccgac gtggtgaagc gaaagtctgg tgaaaggcga tcgagagcag ttgcaaccgt
     1141 gtagatcttc atgtttgaag cgggccgcaa caacttattc gcgttatttt cgaacaaaac
     1201 ttttccggta tcgagagaag tcaccttgac accgaccatt gctgaagaca gttcgggctt
     1261 tgccaaaatt tcagagatgc gactctgcag ctcagcgagg gtcctacttg ggttcgacgt
     1321 tcttggcgga accgcaatag agacggggct tgcggttgg
//
LOCUS       DATCGC010001463         1445 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_54970, whole genome shotgun sequence.
ACCESSION   DATCGC010001463 DATCGC010000000
VERSION     DATCGC010001463.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1445)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1445)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1445
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54970"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..400)
                     /locus_tag="VIJ87_14010"
     CDS             complement(<1..400)
                     /locus_tag="VIJ87_14010"
                     /inference="COORDINATES: protein motif:HMM:NF014766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445550.1"
                     /translation="MKTALLATEQLITVKSIVLHRVRVPLVEPFRISNGSIAEKEAIL
                     IEVLSGDGHVGWGEASPMTGSFYSGDTPESVWNALTTSLIPEVLNAGEIDVSHFYELV
                     RAQGVDSFARAGIEGALWETCARKNEVSLNS"
     gene            complement(422..>1445)
                     /locus_tag="VIJ87_14015"
     CDS             complement(422..>1445)
                     /locus_tag="VIJ87_14015"
                     /inference="COORDINATES: protein motif:HMM:NF014841.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hydroxyacid dehydrogenase"
                     /protein_id="HEY5445551.1"
                     /translation="NNLATQRHGSKLRVLIIASDVLFPHFFGENELVRLGELAEWSRY
                     AQREDSAKLRTEIEQADVLMTTWHSPFLRMEMFGVQPRVRLIAHCGGEVKSRVEEKVF
                     EHIMVTNAAEPMAAPVAEMAMALMLSLVRRIPDYDSEMRSGMIRTNEYVSRGETICGR
                     KVGVIGFGRIGKAFARLLQPFGAQLLVSDPRCDDEAVKPYGGALLELDELLRQCSVVV
                     LAAGLTPESRHLLDQRRLSLMPDGSYLINVARGGLIDMGALLPELRARRLSAALDVTD
                     PLEPLPPDHELRQMPNVLLTPHIAAGGIEMRREIGSVAVGEVVHFCKGEPLQNVVTRE
                     MLLTMT"
BASE COUNT          382 a          424 c          312 g          327 t
ORIGIN      
        1 ggctattgag agacacttca ttctttctag cgcaagtttc ccacaacgct ccctcgatcc
       61 ctgccctcgc aaacgaatca acgccctgcg cccgaaccaa ttcgtaaaaa tgggacacgt
      121 ctatttcacc agcattgagc acttctggaa tcaaagacgt cgtcagtgca ttccaaacac
      181 tttctggagt atcacccgag taaaatgagc ccgtcatcgg cgaggcttca ccccaaccta
      241 catggccatc tccactcaac acttcaatga gaatcgcttc tttctcagct attgatccat
      301 tgctgatgcg aaatggctcc acgagtggaa cacgaactcg atgaagcaca atgctcttca
      361 cggttataag ctgttctgtg gctaacagtg ctgtcttcac aaaccattcc tcgcagcgct
      421 atcaagtcat cgtcaacaac atttctcgcg tgactacgtt ctgaagtggt tcccctttac
      481 agaaatgcac tacttcgcct acagccacac tcccaatttc acgacgcatt tcgataccac
      541 ctgcagcaat atgaggagtg agaaggacgt taggcatctg acgcaactca tgatcgggag
      601 gaagtggctc caatggatca gtcacgtcga gtgcggcgct taaacgacgg gcacgaagct
      661 ctggcaagag agcccccata tcaattagac cccctcgagc aacgttaata aggtaagaac
      721 catccggcat taaactcaga cgacgttggt ccaaaagatg tcgactctca ggagttaggc
      781 cagctgcaag cacaacaact gagcactggc gtaacaactc gtctaattct aagagcgctc
      841 cgccgtaagg cttcaccgcc tcatcgtcgc aacgcggatc actaacgagt agctgggcgc
      901 caaagggctg taaaagtcga gcgaaggctt tgccaatacg accaaagccg atcacgccta
      961 ctttccgacc acagattgtt tcaccacgac ttacgtactc gttcgttctg atcatcccag
     1021 agcgcatttc ggaatcgtaa tcaggtattc gccgaaccag cgacaacatc aaggccatcg
     1081 ccatttcagc aaccggtgca gccataggtt ctgcagcatt tgtgaccatg atgtgctcga
     1141 aaaccttttc ctcaacgcgc gatttcactt cgccaccgca atgagcaatc agcctgacgc
     1201 gaggctgcac tccaaacatc tccattcgaa gaaatggtga atgccacgtc gtcataagca
     1261 cgtccgcttg ttcaatctct gtacgtaact tcgctgaatc ctcacgttga gcgtatcgcg
     1321 accactctgc tagttcaccc agacgaacga gttcattctc accgaagaaa tgtggaaaga
     1381 gcacatcgct cgcgattatg agcacacgca gcttgctgcc atgacgttgc gtcgccaggt
     1441 tgtta
//
LOCUS       DATCGC010001464         1578 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_189058, whole genome shotgun sequence.
ACCESSION   DATCGC010001464 DATCGC010000000
VERSION     DATCGC010001464.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1578)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1578)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1578
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_189058"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..319
                     /locus_tag="VIJ87_14020"
     CDS             <1..319
                     /locus_tag="VIJ87_14020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445552.1"
                     /translation="WLYRGSYQQSHQTYKKVYTTMDKWLHPSELGVRLASNGVDVRDY
                     IRQWSSLSVDAHHVPAKSPVYGLALYNKVYQNYLTMSGPAVQVTYSREMVDKWLSGLG
                     SNC"
     gene            660..1043
                     /locus_tag="VIJ87_14025"
     CDS             660..1043
                     /locus_tag="VIJ87_14025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445553.1"
                     /translation="MASQKKDQSQHTSANTAENTTPRHTPEVPKGLSSALIHPELMNI
                     SNEEWYSIFEEKKNHCWICDIEHTNGTAFCQKHFDQWANQWNISDPEKIGLDIPQFSY
                     AHRDYRGPRLPGHGSRALVRNWLAC"
BASE COUNT          443 a          339 c          416 g          380 t
ORIGIN      
        1 ctggctgtac cggggatcgt atcagcagag ccatcaaacc tacaagaagg tttacacgac
       61 tatggataaa tggcttcacc cctccgagtt gggagtacga cttgcctcta acggcgtaga
      121 tgttcgggat tatatacgcc aatggtctag tctatctgta gacgcacatc atgtacccgc
      181 caagtcccct gtatatggac tcgcgctcta taacaaggtg tatcagaact atctgactat
      241 gagtggaccg gcggttcagg taacgtacag tagggagatg gtcgataagt ggttgtctgg
      301 tttaggatcc aactgttagc ccctcatcta gatcctggcg attatgaatg gaatgaggta
      361 accttgttct cttggactaa gaaagatgag actattagat ggtatgactc tgagggcaaa
      421 gtgccttatg aggttgataa atggcctgtt gttgagttct ataatgagat ggaccgggag
      481 aagcctaaag aaacagcatg gagacagaca ctatttccta agggccttat gaaccattgg
      541 ttgaaaggcg gacacattgg gacgtatgaa gattccatca aagcgttgca aggtaacggg
      601 aaaggttaag ttcaagcgtg cagaccatgc cattttggct accgtggaaa acgagaagga
      661 tggcttcgca aaagaaagac cagtcgcagc atacaagtgc caacactgcg gaaaatacca
      721 cgccacgaca caccccagag gtaccgaaag gcttatcgtc ggcactgatc catcctgaac
      781 tgatgaacat tagtaatgaa gagtggtact ctatctttga agaaaagaag aatcattgtt
      841 ggatttgtga tattgaacat actaatggta cagctttttg tcagaaacac ttcgatcagt
      901 gggctaacca atggaatatc tctgatcctg aaaagattgg tctagacatt ccccaattct
      961 cttatgccca tcgagactac agaggcccca ggttgcccgg tcatgggtca cgggcacttg
     1021 tgcgcaactg gctcgcgtgc taaggtcgaa caggccggtt ggcaagccga accggtgcag
     1081 ggagaagcgg acgacaatga gtttggtcac tcagcgtcaa atgcagagtc aaggtggtag
     1141 ttggattagt agtgtccatc tttaaagagt ggaacgtgcc aagagagggt catacgggcg
     1201 ggaacccgga cgctctcggg agagaatctc acagtaagct gaggcccggt taggagtaga
     1261 agcattcctg attgtcggtg agtagaaccc ccacaggctg taagattgta agcctatgtg
     1321 atagggtaca tggtttgacc gctatatacg gctatcatcg ggttattgtt cctttagtgt
     1381 tacaacacgc cagccttgac accttaccgt aagcgctaca aagtcaatac gttaggatac
     1441 gctattgtct atagagccta tgaacacttc ggcaactgtg tggtctgcgg cgctagggta
     1501 gacccaggat atatcgcctg tgtacctcac aatgataact ggaacaactg gcgtctaggc
     1561 aagataatta catacaca
//
LOCUS       DATCGC010001465         1747 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_354158, whole genome shotgun sequence.
ACCESSION   DATCGC010001465 DATCGC010000000
VERSION     DATCGC010001465.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1747
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_354158"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..259
                     /locus_tag="VIJ87_14030"
     CDS             <1..259
                     /locus_tag="VIJ87_14030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445554.1"
                     /translation="EPTPPPSISLSVTGYKVRGQQTANLTWAGATTTYVDIWRNDSLI
                     LTTPNDGVQKDNMNGRRSGSYTYRVCQSGTQVCSNSVTIIF"
     gene            428..946
                     /locus_tag="VIJ87_14035"
     CDS             428..946
                     /locus_tag="VIJ87_14035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445555.1"
                     /translation="MEQPIKNSGDLQIVAASSSAEKDFDFLIGKWKVHNRKLKSRLNG
                     CSEWTEFEAQVACRKILNGCGNVDSFQTTIDDRPFEGMSLRLFNPRTKLWSIYWADSE
                     KVELDVPQVGSFENKIGNFYARDTFEQKEIIVQFCWDASNPTTPVWSQAFSQDNGQTW
                     EWNWYMTFNLVN"
     gene            1005..>1747
                     /locus_tag="VIJ87_14040"
     CDS             1005..>1747
                     /locus_tag="VIJ87_14040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445556.1"
                     /translation="MKYLVALVLLCVSLIPAVSLSQTKNKTVKHSPPQTGPLQNSTPR
                     TATVKICQGIAIPEGYVIVGYENSSACPNGAYLLRKEETKALGSEATTSGPQAPPPRP
                     ARPRRVGDAQLGLGRELTFSGSVSDLREPVLFGTELGPSVTAPSANLPSSKVEELAEG
                     DVVRIDTNLVTVPLSVFDRQGRLIPNLQRENFSVFEDGVEQQIKHFEPTEKPFTVALV
                     LDTSGSTVFHLWEIKEAAIAFAKQLRPQDR"
BASE COUNT          442 a          446 c          457 g          402 t
ORIGIN      
        1 tgagccgact ccgcctcctt caatctcgct ttcagtaacg ggctacaaag tgagaggaca
       61 gcagaccgct aacttgacct gggccggcgc aacgacaacc tacgtcgaca tctggcgcaa
      121 tgacagtttg attctgacca ctccgaatga tggtgtccaa aaggacaaca tgaatggtcg
      181 gagaagtgga tcttacactt atcgcgtttg tcagagtggc actcaggttt gctctaatag
      241 cgtgactatt atcttctgag ggatttccga accagagatt cccagggttt cgaagaactg
      301 aaagggcacg gatgtttccg tgccctttac ttttcaagct gctaccaatg tgctcgtcgg
      361 tgcgcgggct ggcgaggatt acttctggta ggatcacttg cagcaatctg agtgagcctt
      421 attagatatg gaacagccaa tcaagaattc aggggacttg cagatcgtcg ctgccagtag
      481 ttcagcggaa aaggatttcg actttctgat cggaaaatgg aaagtccaca accgaaagct
      541 gaagagcaga ctgaacggct gttctgagtg gaccgagttt gaggcccagg tagcgtgccg
      601 gaagattctt aacggctgtg gaaatgttga ttcctttcaa acgacgatcg atgacagacc
      661 gtttgagggg atgtcactgc ggctcttcaa tccgcggacc aagctttgga gtatctattg
      721 ggcggatagc gagaaggtcg aactggacgt tccacaagtc ggttcgtttg aaaacaagat
      781 cggcaacttc tacgcgcggg acaccttcga acaaaaagag atcatcgtgc agttctgctg
      841 ggatgcaagt aatccaacca ctcccgtttg gtctcaggcg ttctctcaag acaacgggca
      901 gacgtgggaa tggaactggt atatgacctt caacctagtc aactaaaact ccaagtgact
      961 ataatgtcgc cctcttccca atacgttagg aaggagtagc gaccatgaaa tacctagtcg
     1021 cgttagtcct cctctgtgtc tcgcttatac ctgccgtctc gctgagccaa actaagaata
     1081 aaactgtgaa gcacagtccg ccccaaaccg gaccgctaca aaacagcacg ccgcgaaccg
     1141 caactgtgaa aatatgccag ggcattgcga ttcccgaagg ctacgtgatc gtgggttacg
     1201 agaattcctc tgcttgccct aacggtgcct acctgctcag aaaagaagag acaaaggctc
     1261 tggggtccga ggcgaccact tctggtccac aagctccgcc tccgcggcca gcgcgaccgc
     1321 gcagagttgg tgatgcgcaa ctgggcctcg gtcgcgagtt aactttttca gggtcggttt
     1381 ccgatctgcg cgaacctgtt ttgtttggaa cggagctcgg tccgtcggta actgcacctt
     1441 ccgccaatct tccatctagt aaagtagaag agttagccga gggcgacgtg gtgcgcatcg
     1501 acaccaacct tgtgacggtc cctctaagtg tgttcgatcg tcaaggcagg ttaatcccaa
     1561 atctccagcg tgaaaacttt agtgtgttcg aggacggcgt cgaacaacaa ataaagcatt
     1621 tcgagcctac cgagaagccc ttcacagtgg cgcttgtcct ggatacgtca ggttcaaccg
     1681 tcttccatct atgggaaatc aaagaagcag ccattgcttt tgcaaaacaa ctgcggccgc
     1741 aagatcg
//
LOCUS       DATCGC010001466         1054 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_419160, whole genome shotgun sequence.
ACCESSION   DATCGC010001466 DATCGC010000000
VERSION     DATCGC010001466.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1054)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1054
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_419160"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..400)
                     /locus_tag="VIJ87_14045"
     CDS             complement(<1..400)
                     /locus_tag="VIJ87_14045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445557.1"
                     /translation="MKLPLVLLFLGFLPALFVGQSKERLAGTGPNFKGPVGLQLYSLR
                     DQFKKDVPGTLDQVKAFGIKYVETAGTYGVPPEKFRTMLDERGLKAVSGHFPYEKCRD
                     DVESIAAEAKTLGVQYVGCAWIPHKDPFDEK"
     gene            complement(638..>1054)
                     /locus_tag="VIJ87_14050"
     CDS             complement(638..>1054)
                     /locus_tag="VIJ87_14050"
                     /inference="COORDINATES: protein motif:HMM:NF018178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1080 domain-containing protein"
                     /protein_id="HEY5445558.1"
                     /translation="VAPGSNSGIVYLISEDQDQTWKTGPEMQVLDDDKHPDGKKPSTS
                     AGSLFDLIAPENKTLKPVGEYNKARVVINNGHVEHWLNGNKILEYDLGSASFKELVAK
                     SKFKGFPRFALNSEGFIALQYHGDDVWYRKIRIRAL"
BASE COUNT          238 a          293 c          264 g          259 t
ORIGIN      
        1 tcttttcgtc gaacggatcc ttgtggggaa tccatgcgca cccaacatat tgcacaccca
       61 acgtcttggc ctcggctgcg atgctctcaa cgtcgtcgcg acacttctcg taaggaaagt
      121 gtccactcac agctttgagt cctctctcgt caagcatcgt gcgaaacttt tccggcggaa
      181 ctccataagt accggccgtc tcgacgtact tgatgccgaa tgcctttacc tggtccagtg
      241 tgcctggaac gtccttctta aactgatcgc gaagactata aagctgtagt ccgacggggc
      301 ccttgaagtt tgggccagtc ccagccaagc gttcttttga ctggccaaca aataaagcag
      361 gcagaaatcc caaaaagagg agaacgagtg gaagtttcat ttgcataagt agaaagtcag
      421 gtaccactac gcggtagttg tggcttcggt tatgggcggg caccgcatac gcggctgtgc
      481 cgccctcctt acggaaagcc tccggctttc cgtggttgct ctaaaagttc ttgaggctct
      541 gcctcggcgg cgtagccgcg tttccaaaat cggcgcgacg gaaagccaga ggctttccgc
      601 acggagagcg gcacagccgc gagcgaagca ccaatcctta taaagcgcgg attctaatct
      661 tgcgatacca cacgtcgtca ccgtgatatt gcaacgcgat aaacccttcg gagttgagcg
      721 cgaatcgcgg aaaccccttg aacttacttt tggcgactag ctccttgaac gaagcgcttc
      781 ctaagtcgta ctcaaggatc ttgttgccat tgagccaatg ctctacatga ccgttgttga
      841 ttacgactcg agctttgttg tactcaccga ctggcttcag cgtcttgttt tcaggtgcga
      901 ttagatcaaa taaagaaccc gctgacgtcg acggcttctt gccatcggga tgtttatcgt
      961 catccaagac ctgcatctca ggtccagtct tccaggtctg atcctgatct tctgaaatca
     1021 ggtagacgat cccgctattg gagccaggcg ctac
//
LOCUS       DATCGC010001467         1060 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_354258, whole genome shotgun sequence.
ACCESSION   DATCGC010001467 DATCGC010000000
VERSION     DATCGC010001467.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1060)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1060)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1060
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_354258"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            194..412
                     /locus_tag="VIJ87_14055"
     CDS             194..412
                     /locus_tag="VIJ87_14055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445559.1"
                     /translation="MEKRALRFIDWSQGHRIGEFICNEPGRGSKDRAMPEKMESKDGA
                     ALEFGDDQFNEVSSVFRSCFDPRKKATV"
     gene            409..618
                     /locus_tag="VIJ87_14060"
     CDS             409..618
                     /locus_tag="VIJ87_14060"
                     /inference="COORDINATES: protein motif:HMM:NF015424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TOBE domain-containing protein"
                     /protein_id="HEY5445560.1"
                     /translation="MKESIRNRLPGTIKSIVSDKVLSEVIVETASGEVASVITTRSVE
                     DMKLKTGDKVFVLIKATNVSLRREN"
     gene            637..>1060
                     /gene="modA"
                     /locus_tag="VIJ87_14065"
     CDS             637..>1060
                     /gene="modA"
                     /locus_tag="VIJ87_14065"
                     /inference="COORDINATES: protein motif:HMM:NF024921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015412 - ABC-type molybdate transporter
                     activity [Evidence IEA];
                     GO_function: GO:0030973 - molybdate ion binding [Evidence
                     IEA];
                     GO_process: GO:0015689 - molybdate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEY5445561.1"
                     /translation="MKILSIFLSLCLTVSAQTAQVTVQAASSLTDAMKEIGAAYEKQS
                     GDKVRLNFDASSILARQIEEGAPADVFLSADEMKMDALEKAGYVVPGTRKTLLSNTLV
                     IVVPFDSTLKIHSAADLAGGEVQKIAISQPSSVPVGIYS"
BASE COUNT          264 a          276 c          294 g          226 t
ORIGIN      
        1 agtcgggtga gacatggaag ttcatagact ggtctcgatc agtcgcatcg ctctaacgac
       61 aaggctgcga gttcgtcctc aagcccgcag ccgctcgaac gggagcgtcc aaatgctcga
      121 attcttcaaa ccgatcgttg cccttatcat gaggatttca gacctgcgag ggtagaggat
      181 agcccaaact gagatggaga agcgagccct aagatttatc gattggagtc agggacatcg
      241 aattggcgaa tttatttgca atgagccggg ccgagggagt aaggatcgag cgatgcctga
      301 gaagatggag tcaaaggatg gcgccgccct cgaatttggt gacgaccagt tcaacgaagt
      361 atcctcggtc ttcaggtcgt gtttcgatcc ccgcaagaag gctaccgtat gaaagagagc
      421 atccgcaatc gcctgcctgg gacgatcaag agcatcgtct ccgataaagt tttgagtgaa
      481 gtcatcgtcg aaacggccag cggtgaggtg gcatcagtca ttaccactcg ctccgtcgaa
      541 gacatgaagc tcaagactgg ggacaaggtc ttcgtgctca ttaaagccac caatgtttcc
      601 ctgcgcaggg agaactgacc gaagtccaaa tcagatatga agatcctttc cattttccta
      661 agcctgtgcc ttacggtcag cgcgcaaacc gcgcaggtta ccgtccaggc cgcttccagc
      721 ctcactgacg cgatgaagga aattggcgcg gcatatgaaa agcagagcgg agacaaggtg
      781 cggctcaatt ttgatgcctc cagcatcctc gcccggcaga ttgaggaagg tgcgcccgcc
      841 gatgtgttcc tgtccgccga cgaaatgaag atggacgcct tggagaaagc tggctacgtc
      901 gtgccaggca ctcgtaagac gctactgagt aataccctgg tcatcgtcgt tccgttcgac
      961 agcacattga agattcattc cgccgccgac ctggccggcg gtgaggtcca aaaaattgct
     1021 atctcacaac catccagcgt tccggtgggt atttattcaa
//
LOCUS       DATCGC010001468         1670 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_120304, whole genome shotgun sequence.
ACCESSION   DATCGC010001468 DATCGC010000000
VERSION     DATCGC010001468.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1670)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1670)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1670
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120304"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..792
                     /locus_tag="VIJ87_14070"
     CDS             <1..792
                     /locus_tag="VIJ87_14070"
                     /inference="COORDINATES: protein motif:HMM:NF012385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY5445562.1"
                     /translation="SKSSRAHQPFVKIDCATLPGDLLEAELFGYERGAFTGATESKPG
                     RLEGAGSGTLVLDEIAHLSVDAQAKLLRVIEEREFERLGGRGTIKLKARLIALTNVDL
                     DEAVKRRDFRADLYYRLNVIHIRVPALRERDDDLSSLVKHFISHYSTKHGRKVNGVSK
                     DVFATLQEYEFPGNARELANIVERSVIIANGKRLEVEHLPPTLTASVMTRRNRAKPLS
                     LAQLEAAYIADILAASGGNKTESARILGISRKNLYEKIARYKLNG"
     gene            804..1262
                     /locus_tag="VIJ87_14075"
     CDS             804..1262
                     /locus_tag="VIJ87_14075"
                     /inference="COORDINATES: protein motif:HMM:NF014629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HEY5445563.1"
                     /translation="MRFRIIWTGKTRDPRLRALIDDYSERLSHFVRCEVTELKESGSE
                     DKAGIDRDTKRISDALRPGAVTVLLDPEGTEWTSQQVAEQVKGWEGSGIKEVAFVIGG
                     PRGVSPDFVTRVNKRWSLSRLTLTHEMARVLLIEQLYRAYTIVHGLPYQK"
     gene            1307..>1670
                     /locus_tag="VIJ87_14080"
     CDS             1307..>1670
                     /locus_tag="VIJ87_14080"
                     /inference="COORDINATES: protein motif:HMM:NF013427.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA family transcriptional regulator"
                     /protein_id="HEY5445564.1"
                     /translation="MDKRRTKVFRDKLLGRREGLVGQVQAAELYSRERDAEATQDPAD
                     MAANAYTKELLVSMSDNDRQLLNLIDEALERIETTGYGKCVHCGEALPEKRLEAVPWA
                     RHCVRCQDLHERGLLGEDE"
BASE COUNT          425 a          371 c          494 g          380 t
ORIGIN      
        1 tccaagtcgt cgcgtgctca tcaaccattc gtcaaaatcg actgcgcaac gttgccagga
       61 gatttgttgg aagcggagtt gtttggttac gaacgcggcg cttttactgg agcgactgag
      121 tcaaagccgg ggcgattgga aggcgcaggt agtggcacgc tcgttttgga cgagatcgct
      181 catctgtcag tggatgcgca ggccaagctc ttaagagtga tcgaagagcg tgagtttgaa
      241 cgacttggtg ggcgaggcac gatcaagctc aaagctcgcc tgattgcgtt aaccaatgtc
      301 gaccttgatg aggccgtaaa acgacgagac tttcgcgcgg atctttacta tcgcttgaac
      361 gtgattcata tacgcgttcc ggctctgcgc gaacgtgatg atgatctttc atcattagtg
      421 aagcatttca tttctcacta ttcgaccaag cacggtcgca aggttaatgg cgtttcgaaa
      481 gacgtcttcg caacgctcca ggaatatgag tttccaggca atgcccgcga actcgccaat
      541 attgttgaac gctcagtcat tatcgcaaat gggaagcgat tagaagtcga gcatctacct
      601 ccaacgttga cggcgtcggt catgacgcgg agaaacaggg ccaagccgct cagtcttgct
      661 caactggagg cggcatacat cgccgacatt ttggccgcgt ccggtggcaa caagactgag
      721 agtgcacgga ttcttggaat cagtcgcaag aacctgtacg agaaaattgc gaggtataag
      781 ctcaacggtt gacggactag tcgatgcgct ttcggattat ttggaccggc aagactcgtg
      841 atcctcgact acgagcacta atcgacgatt actctgagcg cctatctcat ttcgtgcgtt
      901 gcgaagtgac ggaattgaag gagtcgggga gtgaagacaa ggcgggcatc gatagggata
      961 caaagcgcat ctcagacgcg ctccgccctg gcgccgtaac ggttcttttg gatccagagg
     1021 gtacagagtg gacgtctcaa caggtggctg agcaagtcaa aggttgggaa ggaagtggga
     1081 tcaaggaagt cgcgtttgtg attggtgggc cgcgtggggt gtcaccagat tttgtgacac
     1141 gagtaaacaa acgttggtcg ctgtcgcggt tgacgttaac tcacgaaatg gcgcgcgtat
     1201 tgttaatcga acagttgtat cgcgcctaca caattgttca cgggttgccg tatcaaaagt
     1261 aaagactccg ataattatca agtagggtgg aggacgaaga cgaataatgg ataagaggcg
     1321 aacaaaagtt ttccgcgata agttgctggg ccgtcgcgaa ggcctggttg gtcaagtaca
     1381 agcagcggaa ttatatagtc gcgaacgaga cgccgaggca acgcaggacc cagctgatat
     1441 ggctgcgaat gcgtacacca aagaattgct ggtatcgatg tcagacaatg atcgacagtt
     1501 gctgaatcta atcgatgagg ctctcgaaag aattgaaacg accggttacg gcaaatgcgt
     1561 acattgtggc gaagctcttc cggagaagag attggaagca gtgccttggg ctcgccactg
     1621 cgttcgctgt caggatttgc acgaacgagg gttattgggt gaggacgaag
//
LOCUS       DATCGC010001469         3379 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_55069, whole genome shotgun sequence.
ACCESSION   DATCGC010001469 DATCGC010000000
VERSION     DATCGC010001469.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3379)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3379)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3379
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55069"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1200)
                     /locus_tag="VIJ87_14085"
     CDS             complement(<1..1200)
                     /locus_tag="VIJ87_14085"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HEY5445565.1"
                     /translation="MLLLLQANTNSLISVNDLQLIAPELILTACACLALVMEVVLPYR
                     KSKLTAYFALIGVALAMVSVGFQFYQLQDSTSVGFYGMIRIDGLALLFRVIFLIAAAL
                     AIGISTRFLDIEGEQHGEYYALVLFATVGMMFLACGYDLITLYIGLELMALTFYVLVA
                     FTKREKKSNEAAMKYFLLGAFSSGVLLYGMSLLYGIAGSTNLGEISTAVTRVIGLTTS
                     DAENWGGLRPMLLLAMISLAAGLFFKIAAVPFHMWAPDVYEGAPTSVTAFLSTGSKAA
                     SFVLYIRVFSQALDGMVTDWAPLLGLVAAITIMVGNWAAVTQENSKRLLAYSSISNAG
                     YLLLGLVAHNKSGYLGLIIYLLVYTFMNMGAFGVIISLRRRGIIGDNVEDLTGLAQKS
                     PGMAAMMA"
     gene            complement(1330..3048)
                     /locus_tag="VIJ87_14090"
     CDS             complement(1330..3048)
                     /locus_tag="VIJ87_14090"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HEY5445566.1"
                     /translation="MTDFIANNILSIITWLPVLGAIIILAGLKKDQSSLIKKFATAWF
                     GLDFVASLWLLRYNSEAGGMQFIEDHSWIPTIGARYQMGADGVTVLLILLTTLLGIIA
                     ALSSWNYIQKREKEYYVLLLLLQAAVVGVFSSMDLFLFYLFFEVSLVPMYFLIGIWGG
                     ENRLYAAIKFFLYTLVGSVVMLLGVLKMYFLTQDATLLAQITPQTLNNIAGNNAALAV
                     LNSAAAAAKSGAGTFNIMYMQAMGSVLPMGTMQVLLFAAFALGFAIKVPMFPFHTWLP
                     DAHVEAPTAGSVILAGILLKLGTYGFYRFNLPMFPGAVKDQQFFGSFGVRSVVVFLAI
                     VSILYGALAAMYFVVKKDGDVKKLVAYSSVSSMGMVMLGLFALNPNGVNGGVMQMINH
                     GIYSAALFLLVGIIYERRHTRNVAEFGGLSHVMPGYAAVFLAMVMTAIGLPLLAVFIS
                     EFLALRGAFESNPTWAALAALGIILNAGYFLWLYQRMFFGTIDNPKNEKLTDLSGREW
                     AYMTPLLILALWIGVYPKPFLAFIEQPVNSVVKQIKPEYQIQGTTDVAAQPRIVPAAP
                     AQATDK"
     gene            complement(3105..>3379)
                     /locus_tag="VIJ87_14095"
     CDS             complement(3105..>3379)
                     /locus_tag="VIJ87_14095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445567.1"
                     /translation="GLATLSRLSSRIVGGFDKYFVDGLVNTLAAFVARLMSPLFRAAQ
                     TGFTQNYALVMVLGLMLAVMAFLSSDIAKAASDTATAIKRAFGLLF"
BASE COUNT          940 a          924 c          828 g          687 t
ORIGIN      
        1 ggccatcatc gccgccattc ccggagactt ctgcgccagt ccagtcaggt cttcgacgtt
       61 gtcaccaata atcccgcggc gtcgcagact gatgattacg ccaaacgcgc ccatgttcat
      121 gaacgtgtaa accagcagat agataatcaa cccgaggtag ccggacttat tgtgagcaac
      181 cagtcccagc aaaaggtaac cggcattcga aatcgaagaa taggccaaca atcgtttgga
      241 gttttcctgg gttacggcgg cccagtttcc aaccatgatc gtgattgcgg ccacgagtcc
      301 caacaacggc gcccaatcgg tcaccatgcc atcaagcgcc tggctgaaga cgcgaatgta
      361 aaggacaaag cttgccgcct tcgaaccagt cgatagaaat gcagtgacag atgtcggcgc
      421 accttcgtaa acgtccggcg cccacatatg aaatggaacg gcagcaatct tgaagaagag
      481 tccagcggcg agcgagatca tggcgagcaa cagcattggt cgcagcccgc cccagttttc
      541 ggcgtcactc gtcgtcagac cgatcactct cgttacggca gtgctgatct caccgaggtt
      601 tgttgaacct gcaattccgt atagcagtga cattccgtag agcaacactc cggacgagaa
      661 cgcacccagt aagaaatact tcatcgccgc ctcgttcgac ttcttttcgc gcttggtgaa
      721 agcaaccagg acgtagaacg tgagcgccat caactcgaga ccgatgtaga gcgtgatgag
      781 atcgtaacca cacgcgagaa acatcatccc gacagtcgca aacagaacca gggcgtaata
      841 ctccccgtgt tgttcgcctt caatgtcgag gaagcgagta gatattccaa tggccagggc
      901 cgctgcaatc aaaaagatta cccggaacaa cagcgcgagc ccgtcaatcc gaatcattcc
      961 gtagaaaccg actgacgttg aatcctgaag ctgataaaac tgaaaaccca ctgagaccat
     1021 cgccaatgcc acgccgatga gggcgaagta ggcagttaac ttactcttcc ggtatggaag
     1081 cacaacctcc atcaccagcg cgagacaagc acacgccgtc aagatcaact ctggtgcgat
     1141 cagttgcaga tcgttaacgc tgattagcga attagtgttg gcttgcagca gaagaagcat
     1201 tatttgttgg tcagtggtcc gatcttagat gtccgataaa ctttagtttg tcgctgagat
     1261 tgttagtgaa ctttctgcat gtcacacgac aaactaaagt ttatcggaca ttcaatcttc
     1321 aatcttctct tatttatccg tcgcttgagc cggcgccgct ggaacgatcc tgggctgagc
     1381 ggcgacgtca gttgttccct ggatttgata ttcgggcttg atctgtttca caaccgaatt
     1441 gacgggttgc tcaatgaaag ccaaaaacgg ttttggatac actccgatcc acagcgccag
     1501 gatcaaaagc ggagtcatgt aagcccactc tcgtccgctc aagtcggtca gcttctcatt
     1561 cttcggattg tcgattgtgc cgaaaaacat tcgctgataa agccagagga agtagcctgc
     1621 attcaaaatg attccgagcg cagccagcgc cgcccaggtc ggatttgatt cgaaggcacc
     1681 ccggagggcc agaaactcgg atatgaatac tgccagcaac ggtaagccaa tcgccgtcat
     1741 gaccatcgcg agaaacactg ctgcgtaccc cggcatgacg tgcgacagcc cgccaaattc
     1801 cgccacgttt ctcgtatgcc tgcgttcata gatgatccca accagcagga ataatgccgc
     1861 ggagtaaatc ccgtgattga tcatctgcat gacgccgccg tttacgccgt ttggatttaa
     1921 cgcaaacagc ccgagcatca ccattcccat cgacgagaca gacgagtaag cgaccagttt
     1981 ttttacgtcg ccatcctttt tcactacaaa atacattgcc gctagcgcac catagagaat
     2041 gctaacaata gccaggaaga cgacaacact tcgcaccccg aacgaaccaa agaactgctg
     2101 atccttcacg gctccgggaa acatcggtaa gttgaagcga tagaaaccat acgttccgag
     2161 cttgagcaaa ataccggcaa gaatcacgga cccggcggtt ggtgcttcga cgtgcgcgtc
     2221 aggcagccac gtgtggaacg gaaacatcgg caccttgatc gcaaagccca gggcgaaagc
     2281 cgcaaacaac agaacctgca ttgtgcccat tggcaaaaca gatcccatgg cctgcatgta
     2341 catgatgtta aaagtgccgg ccccactctt tgctgcggcg gctgcactgt ttaggacagc
     2401 aagcgcggca ttgttgcctg cgatattgtt cagagtctgc ggggtaattt gagcgagcag
     2461 cgtcgcatcc tgagttaaga agtacatctt caaaacaccc agcaacatca cgacggaacc
     2521 aacgagcgtg tacagaaaga acttgatggc cgcgtagagt cgattctcac caccccagat
     2581 cccgatcagg aaatacatcg gcacgagcga cacttcgaag aacaggtaga acagaaacaa
     2641 gtccatcgaa gaaaagacgc caacaacggc ggcctgcaac agaagcagga gaacgtagta
     2701 ttccttttcg cgtttctgga tgtagttcca tgatgaaaga gcagcaatga ttccgagcaa
     2761 cgtcgtgagg agaatcaaca gcacagtgac accgtcggcg cccatctgat agcgcgcacc
     2821 gattgtcggt atccatgaat gatcttcaat gaactgcatg ccaccagctt cgctgttgta
     2881 acgcaacaac caaagcgaag cgacaaagtc gagtccaaac catgcagtcg cgaacttctt
     2941 aatcaaactc gactggtcct ttttcaatcc agcgagaatg ataatcgcgc ccaacaccgg
     3001 tagccaggtg ataatcgaga gaatattgtt agcgataaaa tcagtcatgt ggttttgtgg
     3061 cgcagctcga aagcctgcga cttaaagtgt caaagcaaaa gcattcagaa caacaagccg
     3121 aaggcccgct taattgcagt ggccgtgtcg gacgccgcct tcgcaatgtc cgaactcaaa
     3181 aacgccatca ccgccagcat caagcccaac accattacga gtgcatagtt ttgagtaaaa
     3241 ccagtttgcg cggcccgaaa cagtggcgac atcaagcgcg caacgaaggc ggctagcgta
     3301 tttaccagac catcgacgaa gtatttatcg aagccgccaa cgattcgact agacaaacga
     3361 gaaagcgtgg cgaggccgt
//
LOCUS       DATCGC010001470         3324 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_419249, whole genome shotgun sequence.
ACCESSION   DATCGC010001470 DATCGC010000000
VERSION     DATCGC010001470.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3324)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3324)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3324
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_419249"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            149..239
                     /locus_tag="VIJ87_14100"
     tRNA            149..239
                     /locus_tag="VIJ87_14100"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:183..185,aa:Ser,seq:gct)
     gene            333..1832
                     /gene="gltX"
                     /locus_tag="VIJ87_14105"
     CDS             333..1832
                     /gene="gltX"
                     /locus_tag="VIJ87_14105"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: protein motif:HMM:TIGR00464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009332 - glutamate-tRNA ligase complex
                     [Evidence IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEY5445568.1"
                     /translation="MTVRVRFAPSPTGYLHIGAARSALFNWLYARKVGGKFLLRIEDT
                     DLQRSTEASTRSIIEGLEWIGLDYDGEIVFQSVNAPKHRAAANRLLEEGKAYRDFTPK
                     EQQDDANVKQGIADRARAHVAEGFDQRSNPFRDLPAEESNRRAAAGELFAVRLKVPVE
                     GQTRFDDIVYGPQERSHSEIEDLVLLRSEGNPLYNLSVVIDDIEMGISHVIRGQDHIT
                     NTHKQVLIYQALGAPVPNFAHLPLILAPDKGKLSKRKHGEVVSLTTYRDRGFVPAAFR
                     NFLALLGWSPPEGREILSKEELMKAFSLEAIGRANAIFNFHEDDPQHWTDDKALWMNA
                     EYIRTMPLDELLPMVKAELRANKLWREEYEDDDREWFAKTVDLIRQRFFTLKDFSSQG
                     RAYFSDDFDFEEGAVNKNLKQEPRLRELLSGLADKMESVEPFNAETAEAALRGFADEA
                     GVKAGLLINASRTVLTGQAVGPAMFEIFDLLGRESSVERLRSGVPWFSE"
     gene            2048..2731
                     /locus_tag="VIJ87_14110"
     CDS             2048..2731
                     /locus_tag="VIJ87_14110"
                     /inference="COORDINATES: protein motif:HMM:NF019932.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEY5445569.1"
                     /translation="MMAKKFIFFVLFTLTSSAIALAQNSNSSTTTPARPRTSVNSNQQ
                     AKPPAPKPTSTAKPAVTTSAPKSTAKKPVVKTEPPSGSDGVLAAFNGLLDGIRKADVD
                     AVTTVYWNSPRLSLFNYNGSVTKGWEQVRENRKSSYPEIKDVKLDVRDVSVTMLGRDG
                     AVVTCQWSQSQTYKGAPETAAGRMTLVFKRVGTAWKAIHLHSSPEAPNPASIPPSEQI
                     QKPSPTPNP"
     gene            2794..>3324
                     /locus_tag="VIJ87_14115"
     CDS             2794..>3324
                     /locus_tag="VIJ87_14115"
                     /inference="COORDINATES: protein motif:HMM:NF021445.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerol lysyltransferase
                     domain-containing protein"
                     /protein_id="HEY5445570.1"
                     /translation="MHPHIPIHDLWWLAAGSASYGARYVRNKLKTHRNVIRRKKLRDP
                     TDDLLHFQARYGYNAHSLVSIAPGANAWMSPNVEGAIVYGEFGRVWLAAGDPIAKPAD
                     IPELVNGFMAEAKRKRRIAAFVPATENFARQATSLNLVALKVGAAPYFDLQTWNPRGN
                     AAKKMRAGVNQALRAGV"
BASE COUNT          823 a          826 c          858 g          817 t
ORIGIN      
        1 atcttaacga ctgaaaaacg gttcagcgta ttcataaccg ccttcgtaag ttttacgaag
       61 atcagcagaa tctaggcgaa aatcgtcggc taatccctac cttgacaatc tgagactccc
      121 gactagaatt ggtcttcgcc cgaggtacgg agatgtggcc gagtggctga aggcggcggt
      181 ttgctaaacc gttaagggtc aaaagccctt cacaggttcg aatcctgtca tctccgccag
      241 acattgttcc caagtcagtg gtcagtagtt aatggtcagt agctctgatg agttctaaac
      301 tgaccacgga ttactgacca ctgacttttc ttatgactgt tcgagtacgc ttcgcaccat
      361 cacctactgg gtatctccac atcggcgcgg ctcgatctgc cctcttcaat tggctctatg
      421 ctcgaaaggt tggcggcaag tttcttcttc gcatagaaga caccgatctt cagcgttcaa
      481 ccgaggcgtc gacccgttcc attattgaag gtctggaatg gatcggtttg gattatgacg
      541 gggagattgt ctttcaatct gttaatgcgc cgaagcaccg tgccgccgca aatcggctgc
      601 ttgaagaagg caaagcttat cgagatttca cgcccaagga gcagcaagac gacgcaaatg
      661 tgaagcaggg tattgctgat cgcgcacgtg ctcatgtggc tgaaggtttt gaccagcgta
      721 gcaatccgtt tcgcgatcta cctgctgaag aatcaaatcg acgcgctgcg gctggtgaac
      781 tctttgctgt tagattgaag gttccagtcg aagggcagac gagatttgac gatatcgttt
      841 atggaccgca ggagcgcagt cactctgaaa tcgaagatct cgtattgctc cgttcggaag
      901 gaaatccgct ttacaacttg tcggtcgtga tcgacgatat tgaaatggga atcagccacg
      961 ttattcgcgg ccaggatcat attacgaata cacacaaaca ggttttgatt taccaagctc
     1021 tgggtgctcc ggtaccaaac tttgcacacc tgccgctcat acttgcgcca gacaaaggca
     1081 agctctctaa aagaaaacac ggtgaagtcg tttcgttaac gacctacaga gatcggggat
     1141 ttgtgccggc tgcttttcga aattttcttg ccttgcttgg ttggtcgcct cccgaaggtc
     1201 gcgagattct atccaaagaa gagttgatga aggcgttttc tctcgaagcc atcggacgag
     1261 caaatgcaat cttcaacttc catgaggatg atccgcagca ctggactgac gacaaagcgc
     1321 tttggatgaa tgcggagtac atccgcacga tgccgctcga tgaattgttg ccgatggtga
     1381 aggctgaact tcgagcaaac aagctttggc gagaagaata tgaagacgac gatcgcgaat
     1441 ggtttgctaa aaccgtagat ctaattcgtc agcgtttttt tacgctgaaa gacttttcat
     1501 cgcagggtcg tgcgtacttt tccgacgact tcgattttga ggaaggtgcc gtcaataaaa
     1561 acttgaagca agagccccga ctgcgtgaac tgctttcagg tcttgctgac aagatggagt
     1621 cagtggagcc gttcaacgct gaaactgccg aagccgcgtt acgcgggttt gctgatgaag
     1681 ctggtgtgaa agccggtttg ctcatcaacg cttcgagaac ggtgttgacc ggacaagctg
     1741 tcggtccagc tatgtttgaa atctttgact tgcttggtcg tgagtcttca gtcgagcgac
     1801 ttcgcagcgg agtgccatgg tttagtgaat gacggctaca ccgatttgat ccacgaatac
     1861 tcgactctta aaacgagcaa ctgatagagt ggtacttact tcaccgaggc ccttccttgc
     1921 aatccccgat tctacgagcc gttcgcggat tacgagcgac gtcttaatcg tattgtcacc
     1981 tactatttgt tagaacacag tctggctgcc tgacgtttga gaggttgtca aactgcaaag
     2041 gagtcaaatg atggctaaga aatttatctt ttttgttctg tttacactga cgtcgtctgc
     2101 aattgcttta gcgcagaact ctaattcatc aactacaacg ccggctcgac cgcgaactag
     2161 cgttaattca aatcaacaag caaaaccacc ggcacctaaa ccaacaagca cagcgaaacc
     2221 ggctgttact accagcgctc caaagagtac ggctaagaag ccagtggtaa agactgaacc
     2281 accatctggt tcggacggcg ttctcgcagc ttttaacgga ttgcttgatg gcatccgtaa
     2341 agcggacgtt gatgcggtca ccactgttta ctggaattca cctcgtcttt cgttattcaa
     2401 ctacaacggc agcgtgacaa agggctggga gcaagttcgt gagaatcgca agagctctta
     2461 tcctgagatc aaagacgtaa agcttgatgt gcgcgatgtt tctgtaacga tgctgggcag
     2521 ggacggtgcg gttgtgactt gtcagtggtc gcaatcacaa acttacaagg gcgcaccgga
     2581 aactgcggcg ggccgaatga cgctcgtctt caaacgcgta ggaactgcgt ggaaagcgat
     2641 ccacttgcat tcatcacccg aagcaccgaa tccggcgagc attcctcctt cggagcaaat
     2701 tcagaaaccg tcgccgacgc cgaatccgta gttcggtgtt ttgagcccaa ggcccttcac
     2761 cctggcaaca aggtctcccc ctgagggctt tcaatgcatc cgcatatccc cattcacgat
     2821 ctgtggtggc tcgccgcagg cagcgccagc tatggtgcac gttacgttcg aaacaaatta
     2881 aagacgcacc gtaacgttat tcgacgtaag aagctgcgtg accccacaga cgatcttctt
     2941 catttccagg ccaggtacgg atataacgct cactcgttag tgagtattgc tcccggtgca
     3001 aacgcatgga tgtctcccaa cgtcgaaggg gccattgtgt atggcgagtt tggccgagtg
     3061 tggttggcgg cgggtgatcc gatcgcaaag ccagcagata taccggaatt ggtaaatggc
     3121 ttcatggccg aggcaaaacg gaagcgacga atcgctgcct tcgttcccgc cactgaaaac
     3181 tttgcccggc aagcgacgtc gttgaacctc gtcgcactca aagttggcgc tgctccttac
     3241 tttgatcttc aaacatggaa tccacgtggt aacgctgcca agaagatgcg agctggagtg
     3301 aatcaggctt tgcgagctgg agtg
//
LOCUS       DATCGC010001471         1158 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_24205, whole genome shotgun sequence.
ACCESSION   DATCGC010001471 DATCGC010000000
VERSION     DATCGC010001471.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1158)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1158)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1158
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24205"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..318
                     /locus_tag="VIJ87_14120"
     CDS             <1..318
                     /locus_tag="VIJ87_14120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445571.1"
                     /translation="NFFENSGRPKYYHSRTYPVDIQCASQAIDTLAFMSDEDPESLEL
                     AQRVAAWTIRNMQDGKGYFYYRQYPMMKAKMPMLHWGQGTMFKALAHLLLRLVPTTQS
                     TAA"
     gene            398..>1158
                     /locus_tag="VIJ87_14125"
     CDS             398..>1158
                     /locus_tag="VIJ87_14125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445572.1"
                     /translation="MFKTPWEFYRPEGQYDVVLFAREDASAQGVAAKLVVVYSSQKTP
                     YDEEEKVEITSHRNSGTLSYKESPLPIYGKNVTIQANGVSILTDEESSQSVGFLDKSG
                     RRVIARIGYDLFKEMRALLTDGQPAEYASSPTVEIHIALLRDLIVGSGACLVEVPPVP
                     DGYTFIACLTHDVDHPSIRQHKWDHTMVGFLHRAVLGSLFAVLRGRIPVRHLLTNWVA
                     VARLPFIHLGLARDFWYDFDRYLDIERDLNSTFFV"
BASE COUNT          289 a          272 c          298 g          299 t
ORIGIN      
        1 aatttttttg agaacagcgg aagacccaag tactaccatt ctcgaaccta cccggtcgat
       61 atccaatgtg catctcaagc gatcgatacg ctggcgttca tgtcagatga agacccagag
      121 tccttggaat tggcacaacg agtggcagct tggacgatcc gtaatatgca agatgggaag
      181 ggctactttt actatcggca atacccaatg atgaaggcaa aaatgccgat gctacattgg
      241 ggtcagggca ccatgtttaa ggcgctagcg cacctcttgc tcagattggt accgaccacg
      301 caaagtacag ctgcctgagt catctgtaat cccaccagct atgatagccg tcgccgcaaa
      361 tacagaagat tatgatctcg ttcgagagtt ctttgagttg tttaaaaccc cttgggagtt
      421 ctatcggccc gaagggcaat acgacgttgt gctgtttgcc cgagaagatg cgagcgcgca
      481 gggtgtggcg gcgaagctcg tcgttgtcta ttccagccaa aaaactcctt atgatgagga
      541 ggaaaaggtc gaaatcacat ctcatagaaa cagtggcaca ctttcctata aagagagccc
      601 actcccgatt tacggcaaga acgtcactat tcaagcgaat ggcgtgagca tcctgacaga
      661 tgaggaatcc agtcagtcag taggattttt ggacaagtcc ggccgccggg taattgcgcg
      721 gattggatat gatctattca aggaaatgcg agcgttgctg acggatggtc aaccagccga
      781 atatgcaagc agtccgacag tggagattca tattgctctt ctgcgtgact tgattgtcgg
      841 atctggtgct tgcttagtgg aagtcccacc ggttccagat ggatacacat tcattgcttg
      901 cttgacccac gatgtcgatc atccctcaat tcggcagcat aaatgggacc acacaatggt
      961 cgggtttctg caccgggctg ttcttggttc actgtttgcg gtgcttaggg ggcgaattcc
     1021 cgttcgccat cttttgacca attgggtcgc tgttgcaaga ttgccgttca ttcatctggg
     1081 tctcgcaaga gatttctggt acgacttcga tcggtatctt gatattgaaa gagacctaaa
     1141 ctcaacgttt ttcgtgtt
//
LOCUS       DATCGC010001472         1536 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_386467, whole genome shotgun sequence.
ACCESSION   DATCGC010001472 DATCGC010000000
VERSION     DATCGC010001472.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1536
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_386467"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..775)
                     /locus_tag="VIJ87_14130"
     CDS             complement(<1..775)
                     /locus_tag="VIJ87_14130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445573.1"
                     /translation="MSRNTRTSRSHLFFLILLTCLALIAQFAIPSSYSSNQDKSKKSK
                     TSTRKTTTTKPRPKGEAPRISGGRSAAEASDDQNPVDESLVVTTYDLPMASAASFDGD
                     VRELTPVATNMDQRSIDFEERLQELETPIGPPDTSSAQIATLAPLVTAPAPAPLTNFP
                     GLFRTEPVTGGNAGAGTPPDTNGDVGPNHFIISVNDAYGIYDKTTGSRLAAFTENSLF
                     SSGTRAGGLSGTGTLCDTNSFGDPVVVYDQLADRWILTNF"
     gene            complement(827..1276)
                     /locus_tag="VIJ87_14135"
     CDS             complement(827..1276)
                     /locus_tag="VIJ87_14135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445574.1"
                     /translation="MSNAALVIGLFAVLGPFLAAPSCHSTKGSEQPVHTLNVKQSVAE
                     GIWGGEHVQIEVTNKNVTVEFDCAHGTITAPLITDSEGRFQGTGTFQREHGGPVRNDE
                     TGGASAIYSGSVKDKHLTLTVKLAGSSEVIGTFKLVHGSDGQLTKCR"
BASE COUNT          360 a          365 c          418 g          393 t
ORIGIN      
        1 cgaaattggt aagaatccag cggtcagcga gctgatcata cacgaccact ggatcaccaa
       61 aactgtttgt gtcgcagagc gtaccagtac cgcttagtcc gcccgcgcgt gtgccactgg
      121 agaaaagcga gttctcggtg aaggccgcaa ggcgactgcc cgtggtctta tcatagattc
      181 cgtaggcatc attgacggag ataatgaaat ggtttggtcc gacgtcgccg tttgtgtcag
      241 gaggtgtgcc agcaccggcg tttcctccgg tgaccggctc agttctaaag agacctggga
      301 aattggtcaa aggcgctgga gcgggcgctg taaccaatgg agcaagagta gcgatttgag
      361 cggacgaggt gtcgggtggg ccgatgggag tttccagttc ttgcaaacgt tcctcgaaat
      421 caattgatct ctggtccatg tttgttgcaa ctggtgttag ttcccgaaca tctccgtcaa
      481 aagatgccgc gctggccatc ggcaggtcat aagttgttac cacgagcgac tcatcaaccg
      541 ggttttggtc gtcgcttgct tcagcggcag agcgtccacc actaattcgt ggtgcttcac
      601 ccttgggtct tggcttcgtg gtggtggttt ttctcgttga ggtttttgat ttcttcgact
      661 tgtcctgatt gcttgagtaa gaggagggaa tcgcgaactg cgcgatcaga gcgagacacg
      721 taagcaagat caagaagaac aagtgacttc gggacgtcct ggtatttcgt gacattgtta
      781 gctccgtttc gggtagggat ctcgggttga tgttgtgccg cataaactag cgacatttgg
      841 taagttgacc atcgctgccg tgcaccaact taaatgtgcc aatcacttcg gatgaacccg
      901 ctaacttcac cgttagcgtc aaatgcttat ctttcactga gcccgaatag attgctgagg
      961 ctcctccggt ctcatcattt cggactggcc ctccatgttc tcgttgaaac gttcctgtcc
     1021 cctgaaaacg accttcgctg tccgttatta gcggagcagt gatcgtcccg tgagcacaat
     1081 cgaattcaac cgtcacattt ttgttggtta cctcgatctg aacgtgctct ccaccccaaa
     1141 taccttcggc aactgattgt ttgacattga gggtgtgcac aggttgctct gatcctttag
     1201 tcgagtgaca agaaggcgcg gccagaaatg gaccaagcac agcgaagagt ccaatcacta
     1261 aagcagcgtt actcatatgt ctcgtttgaa atcgagatgc aatagtagag acgtgcaaaa
     1321 aaaatcggcg gatgaacgag gtgcgctgcg taatataaca gcggcccgag cgaagtcaat
     1381 ccaaaatcgc gcagaacatg cgcaatatag gggtgaaaag aagcttggat tgtcgactag
     1441 cagaacgtcc gactgttgat tgagttaacg ctgatttgtc atcgcttccg caggagtact
     1501 gatgaacttg acgtcgggat tttgagcaag tttttc
//
LOCUS       DATCGC010001473         1539 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_354440, whole genome shotgun sequence.
ACCESSION   DATCGC010001473 DATCGC010000000
VERSION     DATCGC010001473.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1539
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_354440"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            48..497
                     /gene="rplM"
                     /locus_tag="VIJ87_14140"
     CDS             48..497
                     /gene="rplM"
                     /locus_tag="VIJ87_14140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019309628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HEY5445575.1"
                     /translation="MSTYFPSGKELAGRRKWYVVDAAGQTLGHLASEVASILTGKRSP
                     RWTPFLDTGDHVVVINASKAVLKGNKVEQKVYRHHTRYPGGLRETTAREMLAKRPERV
                     IELAVKGMLPKNKLGKAMAKKLKVYADAEHPHSAQRPQVYNLTQQAS"
     gene            527..919
                     /gene="rpsI"
                     /locus_tag="VIJ87_14145"
     CDS             527..919
                     /gene="rpsI"
                     /locus_tag="VIJ87_14145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HEY5445576.1"
                     /translation="MADIQYYGTGRRKTSTARVYLRPGSGEVKVNHKPFDRYFPNETL
                     RMIIRQPLQLTETVNKFDLVVNVQGGGPAGQAGAIRHGITRALMEFNADLRPALKHAG
                     LVTRDPRIKERKKYGQKGARKRFQFSKR"
     gene            1050..>1539
                     /gene="rpsB"
                     /locus_tag="VIJ87_14150"
     CDS             1050..>1539
                     /gene="rpsB"
                     /locus_tag="VIJ87_14150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HEY5445577.1"
                     /translation="MVSVTMKELLEAGVHFGHQVRRWNPKMKEFIFGERNGIYIIDLQ
                     KTQRMFREAIAFVTDMIAEDKGRTVLFVGTKRQAQDAIREESEKCGQYYVNQRWLGGL
                     LTNFQTVQKSIKRLKDLEAMQTDGRYEKLTKKERIKLDRERESLNKNLSGIKSMTRLP
                     DVI"
BASE COUNT          431 a          367 c          396 g          345 t
ORIGIN      
        1 attctagccg ttcgcgtttt aatcgctgaa attagagata gttaactatg tcgacatact
       61 tccccagcgg aaaagaactc gctggaagac gaaaatggta cgtggtagat gcagctggcc
      121 agactcttgg tcacttggcg tctgaggttg cttcaatact caccggtaag cggagtccgc
      181 gatggacacc gtttctggac actggcgatc acgtagtcgt gattaatgcc agtaaggcgg
      241 tgttgaaggg gaataaggtt gagcagaagg tttatcgcca ccacacgcgt taccccggtg
      301 gacttcgcga aactaccgcc cgcgagatgc ttgctaagcg ccccgagcgc gtcattgagc
      361 ttgccgtcaa aggcatgctg ccgaaaaaca aactcggcaa agcgatggcg aagaagctta
      421 aggtttatgc cgacgccgaa cacccgcact cagctcaacg cccgcaagtc tacaatctca
      481 ctcaacaagc ttcataagag ctcttacaga aataaggaag attattgtgg ctgatattca
      541 gtattacgga accggacgac gcaaaacttc aaccgccagg gtttatctgc gaccgggttc
      601 cggcgaggtt aaggttaatc acaagccgtt tgaccgttat tttcctaatg aaaccctgag
      661 aatgatcatc cgccagccac ttcagttaac ggaaacggtc aataagtttg acctggtcgt
      721 taacgtccaa ggcggcggtc cggccggaca agctggtgcg attcgccacg gtataactcg
      781 agctttgatg gaattcaacg ccgatcttcg accagctttg aaacatgccg gtctcgtcac
      841 tcgcgatcca agaatcaagg aacgcaagaa gtacggtcaa aagggcgcga gaaaacgctt
      901 ccagttttca aaacgttaat ttggaaactc gaaattcacg tttcgagact tccagaatcc
      961 attgtcgcag cacgattggt tgcttacgct aagggagtcg agaggctgcg gcgagtacat
     1021 taaaccaatt agcagaagga gaacttagtt tggtttcggt taccatgaaa gaattgctgg
     1081 aggccggtgt tcacttcggt caccaggtaa ggcgctggaa tccaaagatg aaggaattca
     1141 tttttggtga gcgcaatggc atttacatca tcgatcttca gaaaacccag cggatgtttc
     1201 gcgaagcaat agcttttgtg accgacatga tcgctgagga caaaggtcga acggtactgt
     1261 tcgtcggaac gaaacgacag gcacaagacg ccatccgcga agaatcagag aagtgcggtc
     1321 agtattacgt aaatcaacgc tggctcggtg gtttgctgac taactttcag accgttcaaa
     1381 agtcgatcaa gcgcctgaaa gatctcgaag cgatgcagac tgatggtcgt tacgagaaac
     1441 taactaagaa agaacgcatc aagctcgatc gcgaacgcga aagtcttaac aagaaccttt
     1501 cgggaattaa gtcgatgacc cgccttcctg acgtgatct
//
LOCUS       DATCGC010001474         1965 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_189252, whole genome shotgun sequence.
ACCESSION   DATCGC010001474 DATCGC010000000
VERSION     DATCGC010001474.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1965)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1965)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1965
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_189252"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            287..1291
                     /locus_tag="VIJ87_14155"
     CDS             287..1291
                     /locus_tag="VIJ87_14155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445578.1"
                     /translation="MITGFNTDIEHDGVVYHVQTEDKGLDTPFILSLVYVGGAILASK
                     RAPYADLIAEGFSDEVLSERLKRQHRLICAAINSGRIDDLKRMSSRPGASGITAPLRP
                     IEGLVELESSEEIATEEVEASAEFELPVETSAQDEAFEIVDFSAPINELILDEDQESA
                     EQVEHSGTVAENDVFEIADIPSQTWVPPPKPEPPPPDDEQELVPVIPEPPHDEAYSVH
                     DPRGQSASGEPIPEDGLTILLLDDSEFNSGESRTMRVMVVNRRGGEEKPLNSVAVSIK
                     ILGTAFRPQIYSLKTNRDGVATVDTQIPQFTSGRAAVLVRAVAKDQAAELRKVIHPGK
                     "
     gene            1305..1505
                     /gene="thiS"
                     /locus_tag="VIJ87_14160"
     CDS             1305..1505
                     /gene="thiS"
                     /locus_tag="VIJ87_14160"
                     /inference="COORDINATES: protein motif:HMM:TIGR01683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HEY5445579.1"
                     /translation="MQVHVNGEIKELTEGTLLSELLTQLNLPVQRIAVEHNRTVVRRA
                     DWEGIVLREGDRVEIVHFVGGG"
     gene            1585..>1965
                     /locus_tag="VIJ87_14165"
     CDS             1585..>1965
                     /locus_tag="VIJ87_14165"
                     /inference="COORDINATES: protein motif:HMM:NF017501.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HEY5445580.1"
                     /translation="MSRAITAIDSEDVFKIGELTFQSRLIIGTGKYRSYVEMQQAHQA
                     SGAEMVTVAVRRVPLDRSAESFLDYLDPNLKILPNTAACYTAEDAVRTARLAREALQT
                     DLLKLEVIGDPTTLFPDNEQTLEAA"
BASE COUNT          524 a          465 c          524 g          452 t
ORIGIN      
        1 cagaaaggtg aaacgacatc ccgaacacaa ccttcacctg ccagagaacg atctcgatcg
       61 atcatgatcg tccgtggcga gcgccacatc actacgagat tgagaatcat tgtacaagcc
      121 gcatgctagt cgaactgatc aagggtgtca agcaacgtta ctaccgtggt ttcaaaagaa
      181 aaaaagcaga ttgaccctga aaaaatcatt gtgctaccgt ctgaaagacc tcaccattac
      241 cgaggcgttt tttgagtcaa ttgaaccgat ggcttcctga acataagtga taactggatt
      301 caatactgat atcgaacatg atggagttgt ctaccatgtt caaacggaag acaagggact
      361 cgacacgcca ttcatccttt ccctggtcta tgtcggtggc gcaatcctcg caagcaaaag
      421 agctccctat gcagacttga ttgctgaggg ttttagcgat gaggtcttgt ctgaacgatt
      481 aaaacggcag catcgtttga tctgtgcagc gattaattcc ggccggattg atgacctgaa
      541 gaggatgagc agccgtccgg gtgcaagcgg aattacggcg cctttacgtc caatcgaagg
      601 actggttgag ctagaaagtt cggaggagat tgcgactgaa gaagtcgagg cgtcggctga
      661 gtttgagttg ccagttgaga cgtcagcaca ggatgaggcg tttgagatag ttgatttttc
      721 agcgccaatc aacgaactaa tactagacga agatcaagag tctgcggagc aggtggaaca
      781 ttccgggacg gtcgcggaaa atgacgtttt cgagatcgcc gacatcccat cgcaaacgtg
      841 ggtgcctccg ccaaaacctg aaccgccacc tccggatgat gaacaggaac tggtgccggt
      901 catacccgaa cccccgcacg acgaagcgta ctccgttcac gatccgcgcg gacagtcagc
      961 ttcgggcgaa cctattcccg aagatggttt gaccatcctg ttgcttgatg attcagaatt
     1021 taattccggc gagtcacgca ccatgcgtgt aatggtggtc aatcgacggg gcggcgaaga
     1081 gaagccgctc aacagtgttg cagtctcaat caaaatactt ggcactgcgt ttagacctca
     1141 gatttattct ttaaaaacca accgcgacgg agtagcaact gtcgatacgc agatccctca
     1201 gttcacctca ggacgagctg cagtgctggt gagagctgtc gccaaggacc aagctgctga
     1261 actccgtaag gtgattcatc ctggcaaatg aagggttgag gcctttgcag gttcacgtca
     1321 acggggaaat caaagagtta actgaaggaa cactcctatc cgagttgctc acccaactta
     1381 atcttcccgt ccaacgaatt gcagttgagc acaatcgaac ggtagtgcgt cgagctgatt
     1441 gggaaggcat tgttttgcgt gaaggcgatc gggtagagat cgtgcacttt gtgggcggtg
     1501 gttgaggggt cgcatcgcag gttgaataag tgtagagtca acgaagcgaa ctttaatcaa
     1561 gcatcgaggt taatttaagt ttctatgtcg cgagcgatta cagcaataga ttcagaagat
     1621 gtgttcaaga tcggtgagct gacatttcag tcacgcctca ttattggaac tgggaaatac
     1681 cgcagctacg ttgaaatgca acaggctcat caggcctcgg gcgctgaaat ggtgactgtc
     1741 gcggtacgcc gagtaccatt agatcgcagc gccgagtcgt ttctggatta tctcgatccg
     1801 aatttgaaga tcctcccaaa cactgcggcc tgctatacgg ctgaagatgc tgttagaaca
     1861 gcccggttgg cccgggaagc gttgcagacg gatttgttga aactcgaagt tatcggagat
     1921 ccgactacat tgtttcccga caatgaacaa acccttgagg ccgct
//
LOCUS       DATCGC010001475         1298 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_189254, whole genome shotgun sequence.
ACCESSION   DATCGC010001475 DATCGC010000000
VERSION     DATCGC010001475.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1298
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_189254"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..372)
                     /locus_tag="VIJ87_14170"
     CDS             complement(<1..372)
                     /locus_tag="VIJ87_14170"
                     /inference="COORDINATES: protein motif:HMM:NF016553.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445581.1"
                     /translation="MTEIGTLHDFAVTADAVAATTKKLEKAAILGNYLKSLSDADLSR
                     AARYFAGHQFAQSDSRTTNVGGSIISSALSEATGFSAEDLYSRYVRLGDPGDLAAEII
                     KEAARNIQPTITLVETESLITR"
     gene            539..676
                     /locus_tag="VIJ87_14175"
                     /pseudo
     CDS             539..676
                     /locus_tag="VIJ87_14175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014461314.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
     gene            943..>1298
                     /locus_tag="VIJ87_14180"
     CDS             943..>1298
                     /locus_tag="VIJ87_14180"
                     /inference="COORDINATES: protein motif:HMM:NF013097.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HEY5445582.1"
                     /translation="MSAFLRALSTNRGNEEELGGQMSFLEHLDELRRRLIRSFIFVFL
                     AASIAFFFADRIYAFLAAPVKKALGEAQQRQVPIAGQTGKEAIVPLTSLKENDSGRYV
                     FGEETKLGTALIPAGAS"
BASE COUNT          325 a          349 c          307 g          317 t
ORIGIN      
        1 cctggttatg agcgattcag tctcaaccag agtaattgtg ggttggatgt tgcgagcagc
       61 ctctttgata atctcggccg ccaggtcacc gggatctcca agacggacat accgtgaata
      121 gagatcctcc gcactaaaac cggtggcctc acttaaagcc gaactgatga tgctgccgcc
      181 aacattagta gtacgcgaat cagactgtgc aaactgatgt cctgcaaagt atctcgccgc
      241 gcgactcagg tcagcgtctg agagcgactt caggtaattc cccagaatcg ccgctttttc
      301 gagctttttc gtggttgcag ccacagcgtc ggctgttact gcaaagtcgt gaagtgtgcc
      361 tatctcagtc atcgctttgt cttattcaat tcactttgtc agtcacgttt cgattgctgc
      421 cttctgcttt ttcacggtgc gcgttacaat ccattccgtt gagaatttct cgtcgcagca
      481 attccaacct tctacaattg gattccaaag gaaggcaaca gaaacggtgt tcgcatttat
      541 tttagattcc ctcggaagca ccgaattatt tttcatcctg gtggtcgctt taatattctt
      601 cggtccgcgc aaactgcctc aactcgcgaa atcaatgggc aaaggactcg ctgaatttcg
      661 aaaagcatct gacgacttca agagaacctg ggaaagagaa gtggcgctcg aagcctcgcg
      721 tatcgacaca actgagaact caatcttagc cgacgagtcg caggcgacat atcccactga
      781 aaccgtggac cagcctcttt acgcaccagc ggatactgat cacgtcgtcg ctcgagaaag
      841 cccataccaa caaagcagca cagcgagcgc tagcgaaaca gctaccgaaa gctctcatcc
      901 agaaccacta cgtaagcatg attggctata gttcaactcg taatgtcagc atttcttaga
      961 gccctatcca caaacagagg caacgaagaa gaactcggcg gacagatgtc cttcctggaa
     1021 catctcgacg agcttcgtcg tcggttgatc cgttcgttca tatttgtatt tctggccgcc
     1081 tcaatcgcgt tcttctttgc tgaccgcatc tatgcgttcc tggctgcgcc ggttaaaaaa
     1141 gcgctgggag aggcccaaca acgacaagta cccatcgctg ggcaaactgg taaggaagcg
     1201 atcgtcccgc taactagttt gaaggagaat gattccggac gttacgtctt cggcgaagaa
     1261 actaagctgg gaactgccct gatacctgcg ggcgcatc
//
LOCUS       DATCGC010001476         1748 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_386514, whole genome shotgun sequence.
ACCESSION   DATCGC010001476 DATCGC010000000
VERSION     DATCGC010001476.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_386514"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1608
                     /locus_tag="VIJ87_14185"
     CDS             <1..1608
                     /locus_tag="VIJ87_14185"
                     /inference="COORDINATES: protein motif:HMM:NF024247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEY5445583.1"
                     /translation="QYDRKPLEIVKTYWQANRNQGQTAGAGAGAGQAVTPPPAGTVSV
                     AGADFESWWRQTIHDGFVPNSASPVKTLAARTDVPASAPTTVATAAGSFEVVIRTDPS
                     IYDGRFANNGWLQELPKPLTKVTWDNVAVVSPNSAFQIAGVRDNGGSTIGREHYVPKV
                     DLVDQRGNTVRAPIWIMPGQPDNVITIYLGFGRSYKGHVAMGATDEPVGYNAYAIRTS
                     YEPWFTSLQVKKTTEQHLLATTQLHFNMEDPNFSKEERDIVRSKTVDEFHREEKHEEK
                     HEEPSMYEPYPYKEQAENAPNYAWGMAIDLNNCVGCNACTIACQAENNIPIVGKDQVA
                     RSREMHWIRVDTYFRGMDPAKPEGTNFMPVPCMHCENAPCEPVCPVHATVHSAEGLND
                     MVYNRCVGTKYCSNNCPYKVRRFNFFLYNDWDTQQYQLMRNPEVTVRSRGVMEKCTYC
                     VQRIQAVKIQTEIEGRRAQDGEIVTACQAVCPTEAIVFGDVNDPNSRVSKLKASERNY
                     SLLEELNTKPRTTYLTHLRNPNPEIKA"
BASE COUNT          455 a          441 c          482 g          370 t
ORIGIN      
        1 caatacgatc gcaagccgct cgagatcgtt aagacctact ggcaggcgaa taggaatcag
       61 gggcagacgg caggagcagg agcaggagca ggacaagctg tgacgccacc tccggctgga
      121 actgtcagtg ttgctggtgc ggactttgag tcatggtggc gtcaaacaat ccacgatggg
      181 ttcgttccaa actccgcatc gcccgtgaag acactggcag cgcgaacgga tgttcctgcg
      241 tcggctccga ctacagttgc aactgctgct ggaagtttcg aagtcgtcat tcgcaccgat
      301 ccttcaattt acgacggccg ctttgcaaac aatggctggt tgcaggaact gccaaagcca
      361 ttaacaaagg tcacgtggga caacgtcgct gtagttagtc ctaactcggc gtttcagatc
      421 gccggagttc gtgataatgg tggcagtacg attggtcgcg agcattacgt gcccaaggtg
      481 gatctggtcg atcaacgcgg caacactgtt cgcgccccga tttggatcat gcccggccaa
      541 ccagacaatg taataaccat ctatcttgga ttcggccgca gctacaaggg acatgtggca
      601 atgggggcca ccgacgaacc cgtcggttac aacgcctacg ccattcgtac ttcatacgag
      661 ccgtggttca ccagcctcca agtcaagaag accaccgaac agcatctgct cgccacaacc
      721 caactccact tcaacatgga ggatccgaac ttcagcaaag aagaacgcga cattgttcgg
      781 tcaaaaacgg tcgacgaatt tcacagagaa gagaagcacg aagagaaaca cgaagagcct
      841 tcgatgtacg agccttaccc ctataaggaa caggctgaga acgcacccaa ctacgcatgg
      901 ggaatggcga tcgatctgaa taattgcgtc ggctgtaatg cgtgcacgat cgcctgccag
      961 gcggagaaca atattcctat cgtgggtaaa gaccaggtgg cgcgtagccg cgagatgcat
     1021 tggattcgtg tggatactta cttccgcgga atggatcctg ctaagcccga aggcaccaac
     1081 ttcatgcctg tgccctgtat gcattgcgag aacgccccgt gcgagccggt gtgtcctgtt
     1141 cacgcgacgg ttcacagtgc tgaaggcttg aacgacatgg tctacaaccg ttgtgtcggc
     1201 acgaagtact gttcgaataa ctgcccgtac aaggttcggc gcttcaattt cttcctctac
     1261 aacgactggg atacgcagca gtatcagttg atgcgaaacc ctgaagtgac ggtgcgaagt
     1321 cgcggcgtga tggagaaatg cacctactgc gtgcagcgca tccaggcagt aaagatccag
     1381 acagagattg aagggcggcg agctcaggac ggcgagattg ttactgcgtg tcaggctgtt
     1441 tgtccgaccg aggcaattgt gtttggcgat gtgaatgatc caaacagtcg cgtgtcgaag
     1501 ttaaaggcca gcgaacgaaa ttattcgttg ctggaagagt tgaataccaa gccgcgaacg
     1561 acttatttga cgcacttgcg aaatccgaat ccggaaatca aagcgtgatg tccgataagc
     1621 tttagcttgt cgatgacttt aaatcctgct agctcgaagt gataggaacg tttgatctga
     1681 agtactgctt ggttgagttt aacgacaagc taaagcttat cgaacattag gaaatggcag
     1741 acgaacca
//
LOCUS       DATCGC010001477         1412 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_322441, whole genome shotgun sequence.
ACCESSION   DATCGC010001477 DATCGC010000000
VERSION     DATCGC010001477.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1412)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1412)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1412
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322441"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..710)
                     /locus_tag="VIJ87_14190"
     CDS             complement(<1..710)
                     /locus_tag="VIJ87_14190"
                     /inference="COORDINATES: protein motif:HMM:NF013134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein subunit M"
                     /protein_id="HEY5445584.1"
                     /translation="MIAAQFDYKVPKSLDEAVSLLAADPDGAKVLAGGHSLIPAMKLR
                     LAQPQLLVDIARLKELSYIREDGDRILIGATTTHYRLESSELLKQICPLLPACAASIG
                     DVQVRNKGTIGGSLAHSDPAGDWPAAAIALHAELVLVGPNGERIVSADDFFLDLLTTD
                     LQPGEILREIRINKPSGKFGQAYQKVPHPASGFAVVGIAVNLSLKTDGSCESASIGVT
                     GVGVKAYRATATETALVNS"
     gene            complement(829..>1412)
                     /locus_tag="VIJ87_14195"
     CDS             complement(829..>1412)
                     /locus_tag="VIJ87_14195"
                     /inference="COORDINATES: protein motif:HMM:NF042649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEY5445585.1"
                     /translation="QTEGRTSLTIQDIALAAHLAKELPPDTEPGLSATYFFEPKNFTF
                     PFGTHIAVVEVDRETGDIKFLRYVAVDDCGKVINPMLVDGQLHGGIVQSIGQAMFEEV
                     VYDEQGQLITGTLMDYAVPRASHVPHFELDRTETPTPVNPLGVKGVGEAGTIGATPAI
                     VGAIVDALAPFGIKHLDMPVKPEALWRIINSTQ"
BASE COUNT          337 a          374 c          353 g          348 t
ORIGIN      
        1 gaattcacta aggcagtttc ggttgccgta gctcggtaag ctttcacacc tacacccgtg
       61 actccgatac tcgcactctc gcacgaaccg tcagttttta atgacagatt tacggcgatg
      121 ccaactactg caaatccaga cgccgggtgt gggacttttt gataagcctg accgaatttg
      181 ccggaaggct tattgattcg tatctcacga agaatctcgc cgggttgcaa atctgtcgtc
      241 agcaggtcga gaaagaaatc atcggcgctg actattcgct ccccattggg accaaccagt
      301 accagttctg catgaagtgc aattgccgcg gcaggccaat caccagccgg atcagaatgg
      361 gccaggcttc caccaatcgt ccctttgttt cggacttgaa cgtcaccaat actggcggcg
      421 caagcgggta acagcggaca gatttgcttc aacagctcag aagattcgag tctgtagtgc
      481 gtggttgtcg caccaatcaa gatgcgatcg ccgtcctcac gtatgtacga aagttccttg
      541 aggcgagcaa tgtccactaa tagctgaggc tgtgcgagtc gaagcttcat cgctggaatt
      601 agactgtgtc caccagcgag aacctttgcc ccatcaggat cggcagccaa cagtgaaaca
      661 gcttcatcaa gcgattttgg aaccttgtaa tcgaattgtg ccgcgatcat atttgcgctc
      721 ctatcgtttt ctctgtgcta tctctgcgtt ctatgtgtct ctgcggttat tcagtactca
      781 aaatcagcaa cacagagaac tccgagatat cacagagaag gtcaagactc actgagtgct
      841 attaataatt cgccacagcg cttccggctt tactggcata tcaagatgct ttattccaaa
      901 cggcgccagc gcgtcgacta tagctccgac gatcgccggt gtcgcgccaa tcgttccggc
      961 ttcgccaaca cctttgacgc cgagtggatt gacgggtgtt ggtgtttcag tgcgatcgag
     1021 ttcgaaatgg ggaacatgac tggctctcgg aactgcatag tccattaacg tgcctgtgat
     1081 tagttgaccc tgctcgtcgt aaaccacctc ttcaaacatt gcttgcccaa tcgactgaac
     1141 aatcccgccg tgtaactgac cgtcgaccag catcggattg ataactttgc cgcaatcatc
     1201 gacagcgaca tagcggagga acttgatatc gccggtttcc cgatcaactt cgacgacggc
     1261 gatgtgagtg ccaaacggga aagtgaaatt cttgggctca aagaagtatg ttgccgacaa
     1321 tcccggttcg gtatcgggag gaagttcctt cgcgaggtga gcagcgagcg caatgtcctg
     1381 aatcgttaga cttgttcggc cctctgtctg ag
//
LOCUS       DATCGC010001478         1560 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_120578, whole genome shotgun sequence.
ACCESSION   DATCGC010001478 DATCGC010000000
VERSION     DATCGC010001478.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1560)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1560)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1560
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120578"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..279)
                     /locus_tag="VIJ87_14200"
     CDS             complement(<1..279)
                     /locus_tag="VIJ87_14200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445586.1"
                     /translation="MKKPSAKLIHILIGKAIIETLLIGAIAVGFNVAAFPPTFHGWGQ
                     AVLPSRSIAGWAVNDASPWERVEVQLFLDGKLVGNQVANLSRPDVSAAG"
     gene            894..1442
                     /locus_tag="VIJ87_14205"
     CDS             894..1442
                     /locus_tag="VIJ87_14205"
                     /inference="COORDINATES: protein motif:HMM:NF025227.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4199 domain-containing protein"
                     /protein_id="HEY5445587.1"
                     /translation="MKKIVLTFGLISGAISATLMLATVPFHDQIGFDRGMFVGYTSMV
                     LSFLLVFFGIRSYRETVGNGEISFLRAFSVGILITMITCVCYVATWEIVASRLMPDFI
                     DKYSNYAVAKMQASGASGAQVEAKRQEMAHFAQLYANPFFRIAMTFLEPFPVGLLITL
                     VSALILRRKPKAFESKQQLASS"
BASE COUNT          399 a          379 c          388 g          394 t
ORIGIN      
        1 tccggccgct gatacatctg gtctcgacaa attcgcaacc tggtttccca caagcttgcc
       61 atcaaggaaa agttgtactt caacacgctc ccaaggagag gcatcattta cggcccaccc
      121 tgcgattgaa cgtgaaggca gcactgcttg gccccaacca tggaatgttg gaggaaatgc
      181 cgcgacattg aatccaactg caatcgcgcc gataagtaga gtctcaatga tagctttgcc
      241 aatcagaata tgaattaact tcgctgaggg tttcttcatt gatgattgat tgaatctgct
      301 aaaggaaaga cggcgggcat tataaacagt ttgctcgaat gtgcaccgag attgcgggcc
      361 acgaaggtat cgaggtcggc acaactccgc gggtaaaaac gtcaaaaggc gaccccaggg
      421 ccgccttttc tagtctcaac gacaagctaa aatctcttgc aaaaatactc caaacggcag
      481 tttggagttt gttcaagtcc aacctataca ttcgtcgctc gggaaggaat tgaatcccat
      541 aaacggcagt ttgtggattg ttcaagtcca agcttttgca ggatagtgtg cgctcaggga
      601 ccgcgctctc tatcaggctt gtgccctcat aggctggact tgaagtatcc acaaactgcc
      661 gtttgtggga ttagaagagt gctgagtcct gatgtgtagg ctggaattga agtaccacaa
      721 actgccgttt gtggaatttt gcaagagccc gctaaagcat atcggacatg caactaaagt
      781 atgattctct tctgaaacag ccaaaatcac ccaaaagtat gacgacagaa gcgcgctgca
      841 acgactaatt tcccggctcg ttagcagaaa ctcagtcagg aggacccact caaatgaaaa
      901 agattgtttt gaccttcggc ttgatctcag gcgccatctc ggcgacgttg atgttggcga
      961 cggttccctt ccacgaccag attggcttcg acagaggcat gtttgttggt tacacgtcga
     1021 tggtactgtc gtttcttctt gtcttcttcg gaattcggtc ttatcgcgag accgtcggta
     1081 acggtgagat tagttttctg cgggcgttca gcgttggcat cctgatcacg atgatcacgt
     1141 gtgtctgcta cgtcgcaaca tgggaaatcg tggcctcccg actcatgcca gacttcattg
     1201 ataaatactc caactacgca gtcgcgaaaa tgcaagcttc aggcgcgtca ggcgcgcagg
     1261 tcgaagcgaa acgtcaggag atggcccatt tcgcgcaact ctacgcaaac cctttcttca
     1321 gaattgcaat gacattcctg gaaccgttcc cagtcggctt gctcattaca cttgtctcgg
     1381 cgctaatcct cagaagaaaa ccgaaggcgt tcgaaagcaa acagcagttg gcaagtagct
     1441 aggatgtggt tgaggtctat gcccagatag ctttgctcaa agtcgatttc ggtggtaacg
     1501 agtttcgtgt tcagttcgtg tgatttcgtg gatcgttcct tttgtccaga aaactaagga
//
LOCUS       DATCGC010001479         2044 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_419401, whole genome shotgun sequence.
ACCESSION   DATCGC010001479 DATCGC010000000
VERSION     DATCGC010001479.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2044
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_419401"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..335
                     /locus_tag="VIJ87_14210"
     CDS             <1..335
                     /locus_tag="VIJ87_14210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445588.1"
                     /translation="LKSAGVVEQTFGGITTNLWDDPFEWTLPEALSTPGHILEYLSEV
                     EATKVRAFASLTSDDVLLRLIALPSGESCRLLELLMQTLVRAADYRGQAAATLKMLSD
                     VSASGFII"
     gene            374..940
                     /locus_tag="VIJ87_14215"
     CDS             374..940
                     /locus_tag="VIJ87_14215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HEY5445589.1"
                     /translation="MFCPQCGQQQLPGVVRFCSRCGFPLDGVMQLLASGGMMPMYREP
                     EGPKVESPRRKGVKQGGMLFLLGAIVVPILGLFAGYFNGAFPEILAGLAAIICFIGGP
                     LRMLFAALFEEGAPPRVTFGTRPYVSPPISSPQQFGPPTHNAALPPPPAQSALGWRRP
                     NTAELVNPPSVTENTTRLLDKEDRTGNQ"
     gene            1012..>2044
                     /locus_tag="VIJ87_14220"
     CDS             1012..>2044
                     /locus_tag="VIJ87_14220"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014673.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEY5445590.1"
                     /translation="MSSTLAEELSERISREGKITFHDWMNAALYHPTLGYYNRSDLKR
                     WGREGDYRTSPERSELFAATFARYFVNLYERMGRPAKFSIVEMGAGNGKFAAGVLGKL
                     QRDFRSVFDILDYVVVEASEDATQSTAEELNGFHGHVHFVDSSDIPVIQSGIVFSNEL
                     LDAFAVHRVKSIEGQLKELYVGLNASGQFVWLADDLSSEEVRRYCDANLPTLLDGQVV
                     EVNLSIEGWLQLLAERFVSGYLVSVDYGAEANVLYNASVRREGTLRAFRRHEFVDDVL
                     SAPGEYDITSTVNWTHVKAEGEKRGFAVDEFAPLDKFLMNVGVLDELERGLNMAVNEG
                     ARSSLTTAAR"
BASE COUNT          472 a          474 c          569 g          529 t
ORIGIN      
        1 ttcttaaaag cgcaggcgta gtagaacaga cgtttggcgg catcactaca aatctctggg
       61 acgacccgtt cgaatggaca ttaccagagg ctctttcaac gcctggccat attcttgaat
      121 acctgtcaga agttgaggct actaaagtta gagcgttcgc cagtctgact agtgatgatg
      181 ttcttttaag gttaatcgcg cttccctcgg gcgaaagctg tagacttctt gagttattaa
      241 tgcaaacttt ggttcgagca gctgattatc gtggtcaggc agccgcaacg cttaaaatgc
      301 tttccgatgt gagtgctagc gggtttatta tctagctagc cctattagcc cctgttagtg
      361 aggaacaatc tcaatgtttt gcccgcaatg cggtcagcag caacttccag gcgtcgtaag
      421 attttgttcg cgctgtggtt tccccctcga tggtgtaatg cagttgctgg ccagtggtgg
      481 aatgatgccc atgtatcgcg aacctgaggg gccaaaggta gagtcgcctc gcaggaaagg
      541 tgttaagcag ggcggaatgc tttttctgtt gggtgcgatt gttgttccga tcctgggtct
      601 ttttgccggt tacttcaatg gcgcattccc ggaaattctg gctggactcg ccgccataat
      661 ctgttttatc ggcggaccgc tcaggatgtt atttgccgca ctgtttgagg aaggggctcc
      721 accacgcgtt acgtttggaa ctcggcctta tgtctcaccg ccgatttcat cgccgcagca
      781 atttggacct ccgacgcata atgcagcgtt gccaccacca ccggcgcaat ctgcattggg
      841 ctggcgaagg ccgaacaccg ctgagcttgt gaatcctccc agcgtgacgg agaacaccac
      901 gcgcctgctg gacaaagaag accgcacggg aaatcagtaa gtatcagact cttaaccgta
      961 ccctccgaaa gaattccacg tgtttggact gtcgaaacag gggaagcaga gttgtcgtca
     1021 acactagcgg aagaactgtc cgaacggatt agtcgcgaag gtaagattac ttttcatgat
     1081 tggatgaatg cggctctcta tcatccgacc ctcggctact acaatcgttc cgatctgaag
     1141 cgttggggaa gagaaggcga ctaccgtacg agtcctgagc gtagcgaact attcgccgca
     1201 acctttgcgc gttacttcgt caatttatat gagcgaatgg gtcggccggc aaagttcagt
     1261 atcgttgaaa tgggtgcagg caatggaaag tttgcagccg gcgttctcgg caaactgcaa
     1321 agggattttc ggtccgtgtt cgacatcctg gattatgtcg tagtggaagc cagtgaggat
     1381 gcgacgcaaa gcaccgccga agaactaaat ggatttcatg gtcacgtaca ttttgtcgat
     1441 tcatcagaca ttcccgtgat ccaatcaggg attgtttttt caaatgaact acttgatgct
     1501 tttgctgtcc accgtgtcaa atctatcgag ggtcaactca aagaactcta cgttggtctg
     1561 aacgcgagcg ggcagtttgt ttggctagct gatgacctgt cgtcagaaga agttcggcgt
     1621 tattgtgatg cgaatctgcc gacgctgttg gacggacagg tagtagaagt aaatttgtca
     1681 attgagggct ggcttcagct gttagctgag aggtttgtca gcggttacct ggtatccgtc
     1741 gattacggtg ctgaggcgaa tgttctgtac aacgcatctg tgcgacgcga aggaacgctc
     1801 agggcgtttc gtcgtcacga atttgtcgac gatgtgctat cagcgccagg tgaatacgac
     1861 atcacgagta cggtcaattg gactcacgtc aaagctgaag gtgagaagcg gggttttgca
     1921 gttgacgagt ttgcgccgct tgataagttt ttaatgaacg tcggagtcct ggacgaactt
     1981 gagcgtggtt tgaacatggc ggtaaacgag ggcgcgcgat ccagtctgac tacagccgca
     2041 cgag
//
LOCUS       DATCGC010001480         1334 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_219821, whole genome shotgun sequence.
ACCESSION   DATCGC010001480 DATCGC010000000
VERSION     DATCGC010001480.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1334)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1334)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1334
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_219821"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(156..>1334)
                     /locus_tag="VIJ87_14225"
     CDS             complement(156..>1334)
                     /locus_tag="VIJ87_14225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445591.1"
                     /translation="ILAQASEILAGAFEKVASALLSEPARLQTLRLTDREIKLALAEP
                     GYSTLAVTTRLDAFVQDREVKFVEYNAENPSSLTDQAGLNKILMEVGAMRDIAARYSL
                     TQFGPAERLLESLLNTFREWGGSDLPSIAILDWTDLPTADEFVLLRDFFVSRGISTLI
                     CSPEQLEYEQGRLRCGAFPIDLVYKRVIINELLDRCADSHPLISAYLAGDVCLVNSFR
                     CKLVHKKACFELLTDESNAGWFTPRERDVIRRTVPWTRGVSQRKTQYRGREVDLVEYV
                     RKQRSQFVVKPNDDYGGRGVVFGERASAAEWDVAISGALEGDYVVQEKVNLRTESFPI
                     FNEFGWTLQPMYVDTNPFLFSGCVGGVMVRLSGSPVVNVTSGGGETGFFVVEGEALPY
                     "
BASE COUNT          322 a          373 c          331 g          308 t
ORIGIN      
        1 cgaaggcgtc gcaactcatt gacgtcacgt catcctttga atttatcgct caggtcgtgc
       61 agtagcccgg ttgcagtagc ccggtgcagt agcccgactg tcaaggaggg ctcaagcaca
      121 ccattgagga tcgcgatgca ccggctacga gcgatttagt atggaagtgc ttcaccttcg
      181 acaacaaaga accccgtctc accgccaccc gatgtaacgt ttaccaccgg tgaacctgac
      241 aatcgcacca tcactcctcc gacgcaacca ctgaagagaa atggatttgt atcaacgtac
      301 attggctgca gggtccaacc gaattcgttg aagataggaa aggactctgt tcgcaggttc
      361 accttctcct gtacaacata gtcgccctcc agggctcccg atatagctac gtcccactca
      421 gctgcggatg cgcgttcgcc aaacacgacg ccacgaccgc catagtcgtc attgggtttc
      481 accacgaatt gcgaccgttg tttccgcaca tactcaacta gatctacctc gcgtccccgg
      541 tactgcgttt ttctctgaga cacacctctt gtccagggca ccgtgcgccg aataacatcc
      601 ctctcacgcg gggtgaacca gcctgcattt gactcatccg tcaacagctc aaaacacgct
      661 ttcttgtgta ctagcttgca acgaaaggaa ttcaccagac aaacgtcgcc ggcaagataa
      721 gcgcttatga gcggatgtga atcagcgcaa cgatcaagca gttcgttgat aattacgcgc
      781 ttgtaaacca gatcaattgg gaatgcgcca cagcgcaacc ttccctgttc gtattccagt
      841 tgttcaggtg aacagatgag ggtcgatatt cctctgctaa cgaagaagtc tcgcaacagg
      901 acgaattcat ctgcggttgg taagtcagtc cagtcgagta tcgcaatgct tggtaagtcg
      961 gatccgcccc actctcggaa tgtattgaga agagattcca ggagtcgctc agctggcccg
     1021 aactgggtga gcgaataacg cgcagcgatg tcgcgcatcg caccaacttc catgaggatc
     1081 ttgtttagac cagcctggtc cgtgagactc gaagggtttt ctgcattgta ctcgacaaac
     1141 tttacctcgc gatcttgaac aaaggcatcg agccgcgttg tcaccgccaa tgtggaataa
     1201 ccgggttcgg ccaatgctag tttgatttcg cggtcagtaa gtcggagtgt ttgcagtcgt
     1261 gccggttcgc ttaacagtgc tgaagcgact ttttcgaagg cgccagcgag aatctcagat
     1321 gcctgagcca ggat
//
LOCUS       DATCGC010001481         1239 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_55318, whole genome shotgun sequence.
ACCESSION   DATCGC010001481 DATCGC010000000
VERSION     DATCGC010001481.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1239
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55318"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1239
                     /locus_tag="VIJ87_14230"
     CDS             <1..>1239
                     /locus_tag="VIJ87_14230"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY5445592.1"
                     /translation="TASFLPLLKVAPIRGRNFHSEEELVGSEKVVLISYDYWQSRFGG
                     NESVLNERITLNGQEHQVIGVLPRHFEFPLAKEASVLTTVAGESSNLKERAAHVLLAL
                     GRLKPDVGVESAQADIVSIAANLSQAYPRSNQNTTAYLVPVHEQLVGKDVRRALWVLL
                     GAVGFILLIACTNTANLLLVRASTRQKEIAIRSALGASRWRIARTLFVESLIMALVAG
                     VAGLLLSVWGLSVIKYYAADQLPRINEVAINPNVMLFTLSLSVLTGVLFSLVPTLKAS
                     HPDVNEVLKSSSKSATSGRSLRLWRNSLVISEVALSLILLVGAGLMIKSFAQLTNVPP
                     GFDPNGVLTGRISMTSKAYAEPEQCVVYVNQVLAKLRALPGVESASFVAPMPFSGGNV
                     GSDFRIEGRPEPDPGKEPDA"
BASE COUNT          283 a          316 c          338 g          302 t
ORIGIN      
        1 caccgccagt ttcctgccgc tattaaaagt tgcgcccatc agaggtcgaa actttcactc
       61 agaagaagag ttggttggca gtgagaaagt cgttctcatc agctacgact actggcaatc
      121 aagattcggt ggaaacgagt cagtcctaaa cgaacgaatc accttaaacg gccaggagca
      181 ccaggtcata ggcgtcctgc cacggcactt cgaatttcct ctcgcaaagg aagcatcagt
      241 tcttacaact gtcgccggcg agagtagtaa cctcaaggag cgcgccgctc acgtgttgtt
      301 ggcgttgggc cggctcaaac cagatgtcgg tgtcgagagc gcacaggctg atattgtttc
      361 gatcgctgca aacctgtcgc aggcatatcc acggtccaac caaaacacga ctgcctatct
      421 ggtaccagtt cacgagcaac tcgtcggtaa agatgtgcgc cgtgcccttt gggtattgct
      481 cggtgccgtc ggctttatct tactgatcgc ttgcacgaac accgcgaatc tcctgttagt
      541 tcgagccagc acacgccaaa aagagattgc gatcagatcg gcgctgggtg ccagtcgttg
      601 gcgaatcgcc aggacgctct ttgtcgaaag cctcatcatg gcgctcgttg ccggtgtcgc
      661 tggattgttg ctgtccgttt ggggcctgag tgttatcaag tattacgctg ccgatcagtt
      721 gccacggatc aacgaagtgg caatcaaccc aaacgttatg ctcttcactt tgagcttatc
      781 tgtattgacg ggtgtactgt tcagcctggt tcccacactc aaagcctcgc atcccgatgt
      841 taacgaagta ctgaagtcat cgtcgaagtc ggcgaccagt ggacggagtt tgcgcttgtg
      901 gcgcaattca ttggtcatat ctgaagttgc gctgagtctg atcctgttag tgggtgccgg
      961 tttgatgatt aagagctttg ctcaactcac taatgtgccg cccggttttg atccaaatgg
     1021 tgtgttgacg ggtcgaatca gcatgacgtc taaggcttat gcggagccgg agcaatgtgt
     1081 tgtttacgtc aatcaagtac tggcaaaact aagagcattg ccaggggtcg aaagcgcctc
     1141 gtttgtcgca ccgatgcctt ttagcggggg taacgtcgga tccgattttc gaatcgaagg
     1201 caggccagag ccagaccctg gaaaggaacc agatgcgag
//
LOCUS       DATCGC010001482         1224 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_455257, whole genome shotgun sequence.
ACCESSION   DATCGC010001482 DATCGC010000000
VERSION     DATCGC010001482.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1224)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1224)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1224
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_455257"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(7..>1224)
                     /locus_tag="VIJ87_14235"
     CDS             complement(7..>1224)
                     /locus_tag="VIJ87_14235"
                     /inference="COORDINATES: protein motif:HMM:NF037222.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 2 protein"
                     /protein_id="HEY5445593.1"
                     /translation="LNKLDWPNPYVSSATAKPTTLTGGSGVKMEGPYEWVPPSYWQLD
                     NKLGGAHGFATEISPGPAVPPVESLQKILPKEHLWPIDDHWNYHAGGGQFKTLKVFTS
                     ALEGRYGQAKDVNDYAFKSQVMAYEGQRAMFEGFAANRYQSTGVIQWMLNNAWPGLIW
                     HLYDYYLMPGGGYFGTKTACEPVHVQYSYSDKSVVLVNMTHQSRKDLRLVVRVYDIDS
                     RERFSKVNTVDLPADANIKSLSLPDIQDLSSTFFLKLILEDSRGEVLSSNFYWLSKTD
                     DVLDWQKSTWYHTPTSSYADMTQLQKLPQVKLNVSAVTSRKGTDEEKTRVSISNPSKS
                     LAFFVQLQIKRDRGEEPVLPVIWTDNYVSLLPGETRTITATYDAKELGGDGAMVVVEG
                     WNSPRVVVPSRQR"
BASE COUNT          280 a          335 c          307 g          302 t
ORIGIN      
        1 cctctactaa cgttgtcgcg acggcaccac tactcgaggt gaattccaac cttcaacaac
       61 aaccattgcg ccgtcgccgc cgagttcctt cgcgtcgtaa gttgcagtaa tcgtcctcgt
      121 ctcacccggc aacaacgaaa cataattgtc cgtccaaata accggaagca caggctcctc
      181 gcctcggtcc cgtttgattt gcaactgaac gaagaaggcc aggctcttac tggggtttga
      241 aatgctcacg cgcgttttct cttcgtcagt gcctttgcga gacgttacgg ccgaaacatt
      301 caactttact tgtggcaact tctgaagctg cgtcatgtct gcatatgaac tcgtgggcgt
      361 gtggtaccac gttgacttct gccaatccaa aacatcgtca gtcttagaca gccagtagaa
      421 gttactgctc agtacttccc ctcgtgagtc ctcgagaatc agcttgagaa agaatgtcga
      481 cgagagatcc tgaatgtcag gaaggctgag actcttgatg ttcgcgtcag caggaagatc
      541 gacggtgttc actttggaaa acctctcgcg cgagtcgatg tcataaactc gaacgacaag
      601 tcgcaaatct tttcgcgact gatgagtcat gtttactaac acgaccgact tgtcactgta
      661 cgagtattga acgtgaactg gttcgcacgc cgtcttcgtt ccgaagtaac caccgcccgg
      721 catcaggtag tagtcgtaga gatgccagat aagtcccggc cacgcgttgt tcagcatcca
      781 ttgaataaca ccggttgact ggtatcgatt cgccgcgaaa ccttcaaaca tcgcgcgctg
      841 accttcatag gccatgacct gagacttgaa tgcatagtcg ttcacatctt tggcctgtcc
      901 ataacgcccc tcgagcgcgc tggtaaaaac tttcagtgtt ttgaattggc cgccgcctgc
      961 gtggtagttc cagtgatcat caatgggcca caggtgttct ttgggaagaa tcttttgcag
     1021 actctcgacg ggcggtactg ccgggccagg actgatctcg gtggcaaagc cgtgagcacc
     1081 accaagtttg ttgtcgagtt gccagtaaga tggcggaacc cattcgtacg gcccttccat
     1141 ctttacgccc gacccaccag ttagcgtcgt cggcttggca gtcgccgatg aaacgtaggg
     1201 gttgggccag tcaagcttgt tgag
//
LOCUS       DATCGC010001483         1165 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_219911, whole genome shotgun sequence.
ACCESSION   DATCGC010001483 DATCGC010000000
VERSION     DATCGC010001483.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1165)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1165)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1165
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_219911"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1165
                     /locus_tag="VIJ87_14240"
     CDS             <1..>1165
                     /locus_tag="VIJ87_14240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445594.1"
                     /translation="QSVFVRDPLNPGTGCSASDTSGCFKDPTKATASNPLGLNIIPQA
                     RWNASGVALLNYFPLPNTFGGSGGAAFNYIKQSPTDVPKRSKVIRFDLRPTNADTIYW
                     KYQWWTSDNLGTGTSGWPGNDNNRWGIDSHYLYKDDGWTANWVRVVNSGVVNEFNFGM
                     RHDSEGFVPGDGEIERLQRSALNYTAPQLFPQNNHLGTIPRVTNWGGVRGPSNGVANI
                     NWLDRWGEIGNDYIQPSFADNLSITHGEHSLKFGMYYERLKNGEAPGGQWSGVFNFAG
                     NDNNFTNALGNTGYAYANALVGNFRNYQEATARPFTNLRLTQVQWYAQDQWRINRRFT
                     LNYGVRFGYHSPFQQIDGQGSNFDPRLFDPTKTVALYENACAVAFTPPATCPAA"
BASE COUNT          287 a          308 c          297 g          273 t
ORIGIN      
        1 caaagtgtct ttgtccgcga tcccctcaat cccgggaccg gttgcagtgc tagcgacacg
       61 agtggctgtt tcaaagaccc gacaaaagcg acggcctcaa atccactcgg cctgaacatc
      121 attccgcaag cacgctggaa cgccagtggc gtggccttgc tgaactattt cccactgcca
      181 aatacgtttg gtggttccgg cggtgcggct ttcaattaca ttaagcagag tccgactgat
      241 gtgccgaaac gcagtaaagt aattcgcttt gatctcagac cgacgaatgc cgacacgatc
      301 tattggaagt atcagtggtg gacttctgac aacctcggga ctggcacctc aggttggccg
      361 ggcaatgaca acaaccgctg gggtatcgat tcccactatc tctacaaaga cgatgggtgg
      421 acggctaact gggttcgggt cgtcaattca ggcgtggtga atgagttcaa ctttggcatg
      481 cgtcacgact ctgaaggttt cgttccaggc gatggcgaaa tcgaacgctt gcaacggtcc
      541 gctttgaatt acaccgcgcc acaactgttc ccacagaaca accacctggg aacaatccca
      601 cgtgttacga attggggagg agttcgcgga ccttcaaacg gagttgcaaa tatcaattgg
      661 ttggatcgct ggggtgaaat tggaaacgat tacattcaac cttcgtttgc cgataacctt
      721 tcaattaccc atggcgaaca ctcgctcaag tttggaatgt attacgagcg attgaagaac
      781 ggtgaagcgc ctggtggtca atggtcaggt gtttttaact tcgccggcaa cgataacaac
      841 tttacaaatg cgctcggcaa tacgggatac gcctacgcca atgcgttggt tggcaacttc
      901 agaaactacc aggaagccac tgcccgaccg ttcaccaatt tgcgacttac acaagttcag
      961 tggtacgccc aggaccaatg gagaattaac cggcgcttca cgctgaacta cggcgtgcgg
     1021 tttgggtatc actcgccgtt tcagcagatc gatggtcaag gatctaactt cgatccgcga
     1081 ctttttgatc caaccaaaac ggttgcgctc tacgagaatg cctgtgcagt tgctttcact
     1141 ccaccggcaa cttgtcctgc agcca
//
LOCUS       DATCGC010001484         1444 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_386681, whole genome shotgun sequence.
ACCESSION   DATCGC010001484 DATCGC010000000
VERSION     DATCGC010001484.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1444)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1444)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1444
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_386681"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..211
                     /locus_tag="VIJ87_14245"
     CDS             <1..211
                     /locus_tag="VIJ87_14245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445595.1"
                     /translation="EIASAILAFVPEPLTRNLRLKQFASIVQRCLAKNPSERYESAAE
                     ILWELDRRKTRGIRRLLGNYAGANS"
     gene            505..>1444
                     /locus_tag="VIJ87_14250"
     CDS             505..>1444
                     /locus_tag="VIJ87_14250"
                     /inference="COORDINATES: protein motif:HMM:NF042637.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6569 family protein"
                     /protein_id="HEY5445596.1"
                     /translation="MKKQLLITTAVLSLLFAISLAFLSSTEAQQSATQTNQSTEMQSA
                     AYRISGPYTHKNLTVFLVHGKDLLKGHSFLTLQEALAQKKVIVYETKDVNELAIRNLS
                     NQDVYVQSGDIVRGGDQDRMISTDFIVPPNSGRMPIAAFCVESGRWSKRGNEVNASFG
                     SSENSVATKELKIAAKVSNSQQAVWENVSLAQDKLSKNVGATVNATASRSSLELSVEN
                     AKVKETTAGYINALEGVLKNKSDVIGYAFAINGQVNSADVYASGALFAKLWPKLLKAS
                     AVEAVAELDSNSKPAEIEQGAVTAFLAESEKPNPAEK"
BASE COUNT          378 a          373 c          361 g          332 t
ORIGIN      
        1 cgaaattgcc agcgcaatcc tggcatttgt tcctgaaccg ctgacaagaa atctacgcct
       61 caagcagttt gcctcgatag tacagcgatg ccttgccaag aaccctagcg agcgatatga
      121 atctgccgct gagatcctgt gggagttaga ccgacgcaag acaagaggca ttagacgtct
      181 ccttggtaac tacgcaggcg caaattcctg aaccaatagg acgagtcgac ctgatttcac
      241 gcaagaattt ccttcgcagt ggcaacgaaa atttggaaca cgccgtctca gactgcaaga
      301 agtctcctcc gtccacgttc tcataactgc catgcagtag cgtctcccta aaccatcagg
      361 ccttcgtatt tgatctcggg gtggtttgcg ttccaggagt cgtctcccct caagagtgaa
      421 tctacattcg cagtcgtgtc ttcgtgtgcc cggttcattt tgaaccaggt tcacgcgcaa
      481 ctcgattgcg tcaggagtac gactatgaaa aagcagcttc tcattaccac tgcggttctc
      541 tcattactct ttgcaatctc gctcgcgttt ctgagctcaa cggaagcgca gcaaagcgcg
      601 actcaaacta atcagtccac tgagatgcaa tcagccgctt accgcatctc cgggccgtac
      661 acacacaaga atctcactgt ctttcttgtt cacgggaagg atctcctcaa gggtcactcg
      721 ttcctcaccc ttcaagaagc tctcgctcag aaaaaggtca ttgtctacga gactaaagac
      781 gttaacgagc tcgcaatcag gaacctttca aaccaggacg tctatgttca gtcaggagat
      841 attgtgcgcg gcggggatca ggatcgaatg atctcgactg acttcattgt tccaccaaac
      901 tcgggtcgga tgccaatcgc cgcgttctgt gtcgagtcag gtcggtggag taagagggga
      961 aatgaagtca acgcatcatt cgggagctct gaaaactcag ttgcaaccaa ggaactaaaa
     1021 attgctgcca aagtatcaaa ctctcagcag gctgtttggg agaacgttag tctcgctcaa
     1081 gacaaattga gcaagaacgt tggcgcgact gtgaatgcca ctgcgtcgcg gtcgagtttg
     1141 gagctttcag tcgagaatgc gaaggtgaaa gaaactacgg cgggctatat caacgcatta
     1201 gaaggcgtcc tgaaaaacaa atcggacgtg atcggctatg cgtttgcgat caatggccaa
     1261 gtgaacagtg ccgatgtgta cgcgtctggc gcacttttcg ccaagctttg gccaaaactg
     1321 ttaaaggcca gtgccgtcga ggctgttgcg gaactggact caaactctaa accggctgaa
     1381 atcgaacagg gagccgttac tgcatttttg gcagaatcgg aaaagccaaa cccggcggag
     1441 aaga
//
LOCUS       DATCGC010001485         1012 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_153247, whole genome shotgun sequence.
ACCESSION   DATCGC010001485 DATCGC010000000
VERSION     DATCGC010001485.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1012)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1012)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1012
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_153247"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(287..>1012)
                     /locus_tag="VIJ87_14255"
     CDS             complement(287..>1012)
                     /locus_tag="VIJ87_14255"
                     /inference="COORDINATES: protein motif:HMM:NF042530.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6596 domain-containing protein"
                     /protein_id="HEY5445597.1"
                     /translation="DVLPQRLASVQAVIYLIFNEGYSSTAGEGLIRNDLCVEAIRLGR
                     VLSKLSPEPENAGLLALMLLQNSRRHARTSEAGELVTLEDQDRLLWDQDDIREGLALV
                     ETSLRQGRVGPYQLQAAIAALHAEAALAAETDWLQIAALYRELMRMNPSPIIALNHAV
                     AVAMSEGPQEGLLLIDVAGSSGKLDNYYLYHAARGDLFRRLQRFDESTEAYSRAIELT
                     TNQVEKQYLRKRIEENGGSERVH"
BASE COUNT          240 a          293 c          235 g          244 t
ORIGIN      
        1 tagaagggtg gcaagcggaa cattggacgt ctttcagtat tgatcccgag cgcgcccccg
       61 ctgagattcg cttttgattc cttggtgctt caaagacaga cggcgggggc gcgctcaggg
      121 tcaatcgagg gaggcgtcca actttccgct tgccaccctt ccaagcttgt tcgaacctct
      181 gaggcgtcct tgcccctgcg aacgaggaat caaatgacca actgaaaaat gtcaaatgat
      241 atatggaaaa ttattttcgg tttgacgttc gcacctcgac ttcttgttaa tgcactcgct
      301 cgcttccacc attctcttcg atcctcttcc gcaggtattg tttctcaact tgattcgtcg
      361 tcagctcaat agctcgtgaa tacgcttccg tcgattcatc aaaccgctgc agccgtctaa
      421 acaaatcccc acgggcggca tggtacaggt aatagttatc aagcttgcct gagctgcccg
      481 ccacgtcaat gagcagcaaa ccctcttgag gcccttcgct catcgcaact gccaccgcat
      541 gattcagcgc gatgattggc gagggattca ttctcattag ctcgcgatac aacgctgcaa
      601 tttggagcca atcggtttcg gcagccaacg cagcttcagc atgcaacgcc gcaatcgctg
      661 cctgtaattg ataaggtccg acacgaccct gccgaagtga agtctccacc aatgccagac
      721 cttcccttat gtcatcttga tcccagagca aacgatcctg atcctcgagc gtgactagtt
      781 caccagcttc actagttctg gcgtggcgtc gcgagttttg caacaacatc aaagcaagca
      841 gcccggcgtt ctctggttca ggcgacagct tagacaacac ccgaccaagt cgaatcgctt
      901 caacacaaag atcgttgcgt attaaccctt cacccgcagt tgacgagtaa ccctcattga
      961 agatgagata gatgactgct tgaactgagg cgagtcgctg cggcaataca tc
//
LOCUS       DATCGC010001486         2577 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_354711, whole genome shotgun sequence.
ACCESSION   DATCGC010001486 DATCGC010000000
VERSION     DATCGC010001486.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2577)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2577
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_354711"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..633)
                     /locus_tag="VIJ87_14260"
     CDS             complement(<1..633)
                     /locus_tag="VIJ87_14260"
                     /inference="COORDINATES: protein motif:HMM:NF012343.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HEY5445598.1"
                     /translation="MKEFESFEVPQPSKVNYINAQYGLKSWLLTKDHKRIALLYLGSI
                     TFFFFIGGLYAMMIRLELLTPQGDLLQSTTYNKVFTQHGIIMVFFFLIPSIPATLGNF
                     LVPMMIGAKDLAFPRINLLSWYIYMAGGLITIYASLAGGVDTGWTFYTPFSTTFSNSY
                     VVAAGLGIFVNGFSSILTGLNFIVTIHTMRAPGMTWFRLPLFIWSHYATSL"
     gene            complement(685..1692)
                     /gene="coxB"
                     /locus_tag="VIJ87_14265"
     CDS             complement(685..1692)
                     /gene="coxB"
                     /locus_tag="VIJ87_14265"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR02866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit II"
                     /protein_id="HEY5445599.1"
                     /translation="MQSWVPFVPDSASTMSWKVDAVYFYLSGVTLFFTLLISAILVFF
                     VIRYRRRTPYEIPRPIAGSHKLETLWTVIPFLISMTIFGWAAKVYFDQSSPPKNAMEV
                     YVVGKQWMWKIQHSTGQREINELHVPIGKKIKLIMTTEDVIHDFFVPAFRVKSDVVPG
                     KYTTLWFEATKTGKFDFYCAEYCGMNHSGMIGSVVVMESREFDNWLSGNTSNTTPAVA
                     GQQLFQTLGCVSCHGATGEGGRGPALNGLFGRETQLVGGQKITADEAYIRESILNPQA
                     QLVDGFGPIMPTFQGQISEDQLVQLLAYIKSLQANSPQQSAPASSPAAATKPSPAPAA
                     K"
     gene            complement(1692..>2577)
                     /locus_tag="VIJ87_14270"
     CDS             complement(1692..>2577)
                     /locus_tag="VIJ87_14270"
                     /inference="COORDINATES: protein motif:HMM:NF014667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEY5445600.1"
                     /translation="TAFCLLLTACCFLPAVVNGQRPPGPSSPLYGARPEAGNVSTGLP
                     AALRDVGIEQKLDHQLPLDLVFRDETGQSVKLGQYFGQKPVVLAFVYYDCPMLCTQVM
                     NGMLESFRVLPFQMGKDYDVVTISFDPRETPQLAESKKKVYVGYLPSKMRPDVNAGWH
                     FLTGDPDNIKQITEAVGFKYHYDDSTKQFAHASGIMVATPQGKLARYYYGISYPARDL
                     RLGLIESAQNKIGTPVDQLLLYCYHYDPATGKYGAAVMNIVRAGGVLTMVAILGMFLL
                     LRRRNPAQLKLKTGGAAS"
BASE COUNT          673 a          683 c          644 g          577 t
ORIGIN      
        1 gagactggtt gcgtagtgcg accagataaa gagcggcaga cggaaccagg tcatgccggg
       61 cgcacgcatc gtatgaatcg taacgatgaa gttcagccct gtcaggatcg aggagaagcc
      121 attgacaaag attcccaggc cagccgcaac tacatatgaa ttcgagaacg tcgtgctgaa
      181 tggtgtgtag aaggtccaac ctgtatcgac accaccggca agcgatgcat agatcgtgat
      241 cagcccgccc gccatgtaga tgtaccaact cagcaaattg atacgcggaa acgcgagatc
      301 ctttgccccg atcatcatcg gcacaaggaa atttccgagc gttgccggta tcgacggaat
      361 caggaagaaa aacaccatga tgattccgtg ctgagtgaat actttgttgt aggtagtcga
      421 ctgtaataaa tcgccttgcg gagtcagtaa ctccaggcgg atcatcattg cgtagagccc
      481 accgatgaaa aagaagaagg tgatggagcc caggtacagc agcgcgatgc gcttgtgatc
      541 tttggtcaac aaccacgatt tcagcccgta ctgggcattg atgtagttga ccttagacgg
      601 ctgtggtact tcgaatgatt cgaattcttt catgacttca cgctaactcg cccgaacggt
      661 cgggacttac tttcacctca caaactactt cgctgcagga gccggcgacg gtttggtcgc
      721 agccgctgga ctgcttgcag gtgccgattg ttgcgggcta ttggcctgca aagattttat
      781 gtatgccagc aactgcacca actgatcttc gctaatctga ccctggaacg tcggcatgat
      841 tggcccaaat ccatcgacca gctgagcctg cggattgaga attgattctc gaatgtatgc
      901 ctcgtcggct gtaattttct gtccgccgac cagctgtgtc tcacgaccaa aaagtccgtt
      961 caaagcagga ccacggccgc cttcgccagt cgctccgtga cacgaaacac aaccaagcgt
     1021 ttgaaacagc tgttgacctg caactgcagg agtcgtgttg cttgtatttc cactcaacca
     1081 gttatcaaac tcgcgcgact ccatgacaac cactgagcca atcattcccg agtgattcat
     1141 tccgcaatac tcagcacagt aaaaatcaaa cttgccggtc ttcgtcgctt caaaccatag
     1201 cgtcgtgtac ttgccgggca cgacatcgga cttcacacga aacgcgggaa cgaagaagtc
     1261 atgaatcacg tcttcggtag tcatgatcaa tttaatcttc ttaccaatcg gaacgtgcag
     1321 ctcatttatc tcgcgctggc cggtggaatg ttgaatcttc cacatccact gtttgccaac
     1381 gacatagact tccatcgcgt ttttcggcgg cgaggattgg tcgaaatata cctttgcggc
     1441 ccaaccaaag atcgtcatcg atatcagaaa gggaataacc gtccaaagcg tctcgagttt
     1501 gtgtgaaccg gcgatcggac gggggatctc gtacggcgtg cgccggcggt aacgaatgac
     1561 aaaaaagacc aggatggccg aaatcaacaa cgtaaaaaac agtgtcacgc cggaaagata
     1621 aaaatagacg gcgtcaacct tccacgacat cgtggatgca ctatcaggaa caaatggaac
     1681 ccaggactgc attaactagc ggcgcctccg gtcttcaatt tcaactgcgc gggattgcgc
     1741 cttcgtaaca acagaaacat tccaagaatt gcgaccatcg ttagcacacc accagcgcga
     1801 acgatattca tcactgcggc gccgtactta ccagtcgctg gatcgtagtg atagcaataa
     1861 agcagtagct gatcgaccgg agttccgatc ttgttttgtg ccgactcaat cagccctaat
     1921 cgcagatcgc gcgcggggta actaattccg tagtagtaac gggcgagctt tccttgcggt
     1981 gtcgcgacca tgattccgct cgcatgagca aactgcttgg tcgagtcgtc gtagtgatat
     2041 ttgaagccca cggcctcggt aatttgtttg atgttgtcag gatcgccagt tagaaaatgc
     2101 caaccagcgt ttacgtctgg ccgcatcttc gacggcaggt aacccacgta aactttcttt
     2161 ttcgactctg ccagctgcgg cgtctctcgt ggatcaaaac tgatcgtcac cacgtcataa
     2221 tcttttccca tctgaaacgg gagaacgcga aaagattcaa gcattccgtt catgacttgc
     2281 gtgcaaagca tcggacagtc gtaataaaca aacgcgagca ccacaggttt ctgaccgaaa
     2341 tactggccca gctttacgga ttgcccggtc tcatcacgaa agaccaggtc cagcggcaat
     2401 tgatgatcaa gcttttgttc aatcccaacg tcgcgaagcg cagccggcaa gcccgttgag
     2461 acgtttccag cttcaggacg cgctccatac agaggtgaac ttggtcccgg tggtcgttgg
     2521 ccattaacaa ccgcaggcag aaaacagcag gcagtaagca gaaggcagaa ggcagtc
//
LOCUS       DATCGC010001487         1316 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_153269, whole genome shotgun sequence.
ACCESSION   DATCGC010001487 DATCGC010000000
VERSION     DATCGC010001487.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1316)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1316)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1316
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_153269"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..682)
                     /locus_tag="VIJ87_14275"
     CDS             complement(<1..682)
                     /locus_tag="VIJ87_14275"
                     /inference="COORDINATES: protein motif:HMM:NF014016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CbiX/SirB N-terminal domain-containing protein"
                     /protein_id="HEY5445601.1"
                     /translation="MVTRNSENNIKQAVTWDESPLNPDINLTPLNQSPENQVGILVVG
                     HGSRRQEANEDVCEATRKIARRGPFAFVEPAFLEIVSPTIAEGFATLVGRGVRHVLIH
                     PYFLSPGRHTRGDIPLAVHSAASQHPGVTYQITEPLAAHDLVIDASIERILEAKNMAS
                     GKRRRKVYLVGAGPGDPGLLTVKALKLLRKADVVVYDYLVNPDLLIHLKEDAERIFVG
                     KVGHGTQTP"
     gene            963..>1316
                     /locus_tag="VIJ87_14280"
     CDS             963..>1316
                     /locus_tag="VIJ87_14280"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HEY5445602.1"
                     /translation="MSTAVQTRISTRHSLEEAIGNTPLIQLLYVTQGVPAGVQVFAKA
                     EHLNPGGSVKDRPALAMILEAELRGRLRPGKTILDASSGNTGIAYGMIAAERGYDVTL
                     CLPRNASTERKQILRA"
BASE COUNT          328 a          355 c          330 g          303 t
ORIGIN      
        1 ggggagtttg agtaccatga cctactttcc cgacaaaaat tcgttccgca tcttctttca
       61 agtgaatcaa caaatcaggg ttgactagat agtcgtagac aaccacgtcc gctttgcgca
      121 acaacttcaa tgctttcacc gtcaacagtc cgggatcacc cggacctgcc ccgacgagat
      181 agaccttgcg acgtcgtttt ccgcttgcca tgtttttcgc ttccagaatt cgttcgatgg
      241 atgcatcgat gactaggtcg tgggcggcga gtggctcggt gatctgataa gtgactcccg
      301 gatgctgact cgctgcagaa tgaacagcga gtgggatatc accacgtgta tgcctgccgg
      361 gtgagagaaa gtaaggatga atgaggacgt ggcggacacc gcgtccaacc aatgtggcaa
      421 atccttctgc aatcgttggg cttacgatct ccagaaaggc cggctccaca aacgcgaatg
      481 ggccacgcct ggcaatcttc cgcgttgcct cgcacacatc ttcattcgct tcctggcgtc
      541 ggctaccgtg tccgactact aagatgccaa cttggttttc aggagattga ttgagtgggg
      601 tgaggtttat atcaggatta agaggagact cgtcccaggt caccgcttgt ttgatgttgt
      661 tttctgaatt cctggtgacc accgatctaa accccttcca ctatcgagta cctgtttcga
      721 actgcacacg cggcattccc tgccgcaaca gcagcaacaa caagcagcca gtgaaaggaa
      781 ggatctcttc atgacggaag cgtgactcta gacaacccgg ccaagtcaat caagtcaatt
      841 cgatttacga ctagctaaac agaattaaat agacagtact aaacgtcgtt catatagtgc
      901 cgctcagccc caaaagcgaa ccaaatgtac tcattagcct tttccgacag ctgaatactc
      961 gaatgtcaac cgcagtccaa accagaatct caaccagaca ttcgctcgag gaagctatcg
     1021 gcaacacgcc tttgatacaa ctgctttatg tcactcaagg cgttccagcg ggcgtgcagg
     1081 tttttgcgaa ggctgaacac ctgaacccag gcggctcagt aaaagatcgc ccggctctcg
     1141 cgatgattct tgaggccgag ttgcgcggca gactccgccc gggcaaaacg attctcgatg
     1201 caagcagtgg taacaccggc attgcctacg ggatgattgc ggctgagcga gggtatgacg
     1261 tcaccctatg tttgccgcgt aatgcgagta ctgaacgcaa gcagatccta cgtgcg
//
LOCUS       DATCGC010001488         1790 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_386734, whole genome shotgun sequence.
ACCESSION   DATCGC010001488 DATCGC010000000
VERSION     DATCGC010001488.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1790)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1790)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1790
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_386734"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(230..1255)
                     /locus_tag="VIJ87_14285"
     CDS             complement(230..1255)
                     /locus_tag="VIJ87_14285"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY5445603.1"
                     /translation="MRYVENPPNPWLTHSVEWIGEPPEVKLEVFEETETRTIITHNNS
                     PDVGFDYTVNCYRGCIHGCTYCFSRPTHEYLGYGAGSDFDRKIVAKVNAPELLRKELM
                     KPSWKGDEIVFSFTSDPYIPLEAHYKLTRECLKVCAEFRQPIGIITKSAMIRRDIDVL
                     QDLTRNASLGVFFTIPFTDIEVARAVEPYAPLPEARFHAMEELAAAGIEVGIGIAPVI
                     PGLSNDIPELLKRAKDAGATQAFINMLRLPGSVAPYFEERLRDKLPTRADRVLNRIRE
                     AREGKMNSSVFGERMRGKGQYWEATARLFKIHSARLGFNKKRTHQTSATTTFRRPTAQ
                     GSLFGTA"
     gene            complement(1277..1489)
                     /locus_tag="VIJ87_14290"
     CDS             complement(1277..1489)
                     /locus_tag="VIJ87_14290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445604.1"
                     /translation="MAGQHTENLFRRFKGEAVSIKTVSGGLYEGRVTEITNDYICLSE
                     TVGGEGALVYLMMSSIESMTPKSTTA"
     gene            complement(1521..>1790)
                     /locus_tag="VIJ87_14295"
     CDS             complement(1521..>1790)
                     /locus_tag="VIJ87_14295"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY5445605.1"
                     /translation="VNMEAEPPIATLRAGALKITLVQQLETMLRRGRGAHFFIGVDDV
                     DSFYVQVRERAPEVQPPSDEGWGGRFVTLLDPDKYRFFFVTWSEQ"
BASE COUNT          444 a          475 c          422 g          449 t
ORIGIN      
        1 cgagtaaggc tcacggttgc gaatcacgtc tcggatcagc atgttggcct ccctgaatct
       61 gtggctggtt gggtgcgggc attatagtgc agagatgact ggtcaggaca gagttggtgt
      121 tagttcgtgt catttcgcgg atgcttttct tggagcgtaa caggcgatcc acgaaatcaa
      181 aggaataaga cgaacaagaa actgacggca aaccgagtat tgacacagtc tatgccgttc
      241 caaacaaact cccttgtgca gtcggtctgc gaaaggtcgt cgtggccgat gtctggtgag
      301 ttcgcttttt attgaagcca aggcgcgcgc tgtgaatctt gaacaatcgg gctgtcgctt
      361 cccagtattg ccctttgcct cgcatacgct caccaaaaac gctcgaattc atcttgccct
      421 cccgagcctc acgaatccga tttaagactc gatcagctcg ggtcggtaac ttgtcgcgaa
      481 gccgttcttc aaagtaaggt gcgacactgc cgggcaagcg cagcatatta ataaatgcct
      541 gcgtcgctcc agcgtctttg gcgcgtttca aaagctccgg aatatcattc gataaacccg
      601 gaatcaccgg agcgatccca atgccaactt ctattccggc ggctgcaagt tcctccatcg
      661 catgaaatct tgcttccggc aggggtgcat aaggctccac ggcacgcgcc acttcaatat
      721 ccgtaaaagg aatcgtgaag aagacaccga gactcgcatt cctcgtcaga tcttgcagca
      781 catcgatatc acgccggatc atggccgact tagtaataat tcctattggc tgtcgaaact
      841 ccgcacagac tttcaaacac tctcgcgtca gtttgtaatg tgcctcgagt gggatgtacg
      901 ggtcggacgt aaacgaaaag acgatctcat cgcctttcca tgagggtttc atcaactcct
      961 ttcggaggag ttcaggtgca tttactttag cgacgatctt ccggtcgaaa tctgaaccgg
     1021 cgccataacc aaggtattcg tgtgtcggtc gactaaaaca gtaggtgcaa ccgtgaatgc
     1081 atccacgata acaattaacc gtatagtcaa agccaacgtc cggactgttg ttgtgagtta
     1141 ttatcgttcg agtttcagtt tcctcgaaga cttccaactt aacttctgga ggttctccaa
     1201 tccattcgac tgagtgggtc agccagggat tgggcgggtt ctcaacgtaa cgcataaaca
     1261 acctgccttg aaataatcac gcggtggtgc tcttcggagt catcgattca atcgaactca
     1321 tcatcagata gacgagcgca ccttctccac caaccgtctc actaagacaa atataatcgt
     1381 tggtgatctc tgtaacgcgt ccctcgtaaa gtccgccaga cacagtcttg attgagacgg
     1441 cttctccttt gaacctacga aagagatttt ctgtatgctg tccagccatg tttactccct
     1501 tactattctt ggttgtcttt tcactgttcc gaccaggtaa cgaaaaaaaa gcgatacttg
     1561 tccggatcca gcaaagtaac aaagcgaccg ccccaacctt cgtctgaagg aggttgaact
     1621 tctggtgctc tctctcgaac ttggacgtaa aacgaatcga catcatcgac gccgataaag
     1681 aaatgcgcac cacgcccgcg ccgcaacatc gtctccagct gttgaaccaa ggttattttc
     1741 aacgcaccag ctctcaaggt ggcgatcgga ggttctgcct ccatgttcac
//
LOCUS       DATCGC010001489         1043 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_253770, whole genome shotgun sequence.
ACCESSION   DATCGC010001489 DATCGC010000000
VERSION     DATCGC010001489.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1043
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_253770"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..372
                     /locus_tag="VIJ87_14300"
     CDS             <1..372
                     /locus_tag="VIJ87_14300"
                     /inference="COORDINATES: protein motif:HMM:NF045201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445606.1"
                     /translation="APWIQGDKLADYLNQRSIPGVRFVSLRFKPNASVFKNEDCGGFN
                     IIITDRSAFRPLLTGIEIASALRQLYPMDWKIDSYLRLLVNANTLERLKRGDSPRDIV
                     TSWNSGLEEFRRLRAEFFLYN"
     gene            complement(518..>1043)
                     /locus_tag="VIJ87_14305"
     CDS             complement(518..>1043)
                     /locus_tag="VIJ87_14305"
                     /inference="COORDINATES: protein motif:HMM:NF013247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HEY5445607.1"
                     /translation="SSVNSALESVAQNHTQGKWKARLSLTRAGEISTNLSKVQPNKEM
                     FRVGISRSPVDSSDRLLFHKTTHREFYSSELATQSTCDDLIFFNERGEVTESAIANVV
                     VSASDGLVTPPITSGLLAGTFRDQLIADGLIKERTISIDELRKADELFLINSVRKWMK
                     AVLVNETGSADYTT"
BASE COUNT          242 a          257 c          253 g          291 t
ORIGIN      
        1 gcgccgtgga ttcagggaga taagcttgct gactacttga atcagcgatc gattccaggc
       61 gtgaggtttg tgtcgttgcg tttcaaacca aacgcgtctg tgtttaagaa tgaagactgc
      121 ggcggtttca atatcatcat cacggaccgg tcggcgtttc gtcctctatt aaccggcatc
      181 gagatcgcat cggctttgcg gcagctttat cctatggatt ggaaaatcga tagctatcta
      241 agactgctag tgaatgctaa tacgttggaa cggctgaagc gcggcgattc acctcgagat
      301 attgtcacgt catggaattc cggtttggaa gagtttcggc gcctgcgagc agagtttttc
      361 ctctacaact gatctgtgtc gcaagccagc atgttttgtt ggtctctctg cgtctttgtg
      421 ccctctgcgt taaatggggt ggccgaccaa agtttacgca gagatcactg agacgcagag
      481 aacgcagaga aatacaaacg ctactctatg cggctctcta cgttgtgtaa tctgccgatc
      541 ctgtttcgtt aaccagaact gctttcatcc attttcgcac tgagttaatc agaaacagct
      601 catcagcttt tcgtaactca tcaatcgaaa ttgtccgctc cttgattaat ccatcagcga
      661 tcaactgatc gcgaaacgta cctgcaagga gtcctgaagt tattggtggc gtgacaagtc
      721 cgtcactcgc acttaccacg acgttagcga tagccgactc tgtcacttcg ccgcgctcgt
      781 taaagaaaat cagatcatca caggtcgact gggtcgccag ttcacttgaa taaaactctc
      841 ggtgtgtagt tttgtggaat aacaaccgat cactggaatc aaccggcgac cgagagatgc
      901 cgactcgaaa catttcctta ttcggttgca cctttgacag gttcgttgag atttctccag
      961 ctcttgtgag cgacagccga gctttccatt ttccttgcgt gtggttttga gccaccgact
     1021 ctagtgccga gttcacgctt gat
//
LOCUS       DATCGC010001490         2329 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_55407, whole genome shotgun sequence.
ACCESSION   DATCGC010001490 DATCGC010000000
VERSION     DATCGC010001490.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2329)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2329)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2329
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55407"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..285)
                     /locus_tag="VIJ87_14310"
     CDS             complement(<1..285)
                     /locus_tag="VIJ87_14310"
                     /inference="COORDINATES: protein motif:HMM:NF012673.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HEY5445608.1"
                     /translation="MRADTNELLEFAVDIARGAGEITLKYFRQDPETSKKADGSFVTI
                     ADREAEKFLRQRILERFPDDTVLGEEEGESKGNSGRRWVVDPIDGTFAFVH"
     gene            complement(419..1039)
                     /gene="hisIE"
                     /locus_tag="VIJ87_14315"
     CDS             complement(419..1039)
                     /gene="hisIE"
                     /locus_tag="VIJ87_14315"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: protein motif:HMM:NF002747.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004635 - phosphoribosyl-AMP
                     cyclohydrolase activity [Evidence IEA];
                     GO_function: GO:0004636 - phosphoribosyl-ATP diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HEY5445609.1"
                     /translation="MNIDLDKLKYDEHGLLPAIGQDADSREVLTLAYMNAESLARTIE
                     TKETWFWSRSRNELWHKGATSGNTQQVVDLIHDCDSDALVVLVKPAGPACHTGARSCF
                     GNTEVAASNLGVVLDQLYDLIRERDKTRPANSYTTYLFNEGLDKILKKVGEESAETII
                     AAKNEEAEPLIAEVSDLLYHLIVLLVARGVSLEQVREELSKRRGGG"
     gene            complement(1036..1800)
                     /gene="hisF"
                     /locus_tag="VIJ87_14320"
     CDS             complement(1036..1800)
                     /gene="hisF"
                     /locus_tag="VIJ87_14320"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: protein motif:HMM:NF013168.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEY5445610.1"
                     /translation="MLAKRIIPCLDVDNGRVVKGVKFVSLVDAGDPVEQAKRYDLEGA
                     DELTFLDITASSDRRDIVANLVRRVADEVFIPFTVGGGLRTVEDVRAILRAGADKITL
                     NTAALENPHLISECAETFGSQCIVVAVDARRRRESDETGWDVYTHGGRKNVGIDALEW
                     IMRAQQLGAGEILLTSMDCDGTKDGYDVQLTRAAADSVKIPVIASGGAGKLEHFHAAL
                     TSGGASAVLAASLFHFGELSIAQVKEYLGEREVLVR"
     gene            complement(1958..>2329)
                     /gene="hisH"
                     /locus_tag="VIJ87_14325"
     CDS             complement(1958..>2329)
                     /gene="hisH"
                     /locus_tag="VIJ87_14325"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR01855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEY5445611.1"
                     /translation="CVGMQMLFEESEEFGTCEGLGFIAGRVRRFDDTKLVVPQVGWNQ
                     IRQRKAHRLFAGIEDEAFCYFVHSYYCEPASDDVIVGETDYGVQYASVVAKGNVCGVQ
                     FHPEKSQAVGLKMLANFASGV"
BASE COUNT          567 a          705 c          504 g          553 t
ORIGIN      
        1 atggacaaaa gcaaacgtcc catcgattgg atcaaccacc caacgtcgac cgctattacc
       61 tttcgactcg ccttcctctt caccgagtac cgtgtcatcc ggaaaccgtt cgagtattcg
      121 ttggcgaaga aacttctcgg cctctcggtc agctatcgtg acaaaactgc cgtcagcttt
      181 cttactcgtt tccggatcct gacgaaaata cttcaaggtt atttcgccgg caccgcgcgc
      241 tatgtccacg gcgaactcga gtaactcgtt tgtgtcagct ctcatttgtt gcgactcgtt
      301 tggcttctct gtggtctctg cgtctctgtg ttctctgcgt taactgttgg ttggcgtata
      361 taaaaacgca gaggtcacag agacgcagag aacacagagg cgcagagaac acagagatct
      421 aaccgcctcc acgccttttg gacagctcct cacgcacttg ttctaaactc acgccacgcg
      481 ccaccagcaa gacgatcaag tgataaagaa gatccgagac ttcagctatc aaaggctcag
      541 cttcttcatt cttcgctgca attatcgtct cagctgactc ttccccaacc ttttttagaa
      601 tcttgtcgag accttcatta aacaggtaag tcgtatacga attcgccggc ctggttttat
      661 cccgctcccg gattaagtcg taaagttgat caagcacaac gccaagatta ctagcagcaa
      721 cttctgtgtt accaaaacaa gatcgagcac ccgtgtgaca tgccggaccg gcgggcttaa
      781 ccaacacaac aagcgcgtcg ctatcgcaat cgtgaatcag atcgacgacc tgctgcgtat
      841 ttccagacgt cgcacctttg tgccagagtt cgtttctcga ccttgaccaa aaccacgtct
      901 ccttcgtttc aatcgttcga gccagactct cagcattcat gtaagcaagg gtcaggacct
      961 cgcggctatc tgcgtcctgg cctatagcgg gaagcagccc gtgctcgtcg tacttcaatt
     1021 tgtcgaggtc aatattcatc taactaacac ttcgcgctcg ccgagatact ccttaacctg
     1081 tgcgattgaa agctctccaa agtgaaacaa cgatgccgct aatacagcgc tagcgccgcc
     1141 cgaggtcagt gccgcgtgga aatgctcaag ctttccagct ccacccgaag caatcacagg
     1201 gatcttcacc gaatcggcag cggcacgagt gagttgaacg tcataaccat ctttggtccc
     1261 gtcacaatcc atgctggtta acagtatttc gccggctccg agctgttgcg cgcgcatgat
     1321 ccactcgagc gcatcaatcc ctacgttctt cctgccaccg tgagtgtaaa catcccaccc
     1381 ggtttcatcc gactcccgcc tgcgtcgcgc atccactgca acaacaatac actggctacc
     1441 aaaagtttcg gcgcattcgc tgatcaagtg cggattctca agggccgccg tgtttagcgt
     1501 tatcttgtca gcaccagccc gaagaattgc acgaacgtct tcaactgttc gtaaaccacc
     1561 acccaccgta aacggaataa agacttcatc agctacgcgg cgcacgagat tggcaacgat
     1621 gtcgcggcgg tcggaagagg cggtgatatc gagaaacgtc agctcgtcag caccttcgag
     1681 atcgtaacgc tttgcctgct caaccggatc acctgcatcc accagcgaaa cgaacttgac
     1741 gcccttaaca acgcggccat tgtccacatc aagacaggga atgattcgtt tcgccagcat
     1801 gctttatgtc cgatatgctt cagcttgtcg ttgctaagaa aggtcagcca cagatgaacg
     1861 cagatcttcc cagatcagaa caacgatgct caattatcag ggcgttgaac tcctactgtt
     1921 ctattcctat ctgtgctcat ctgcgttcat ctgtggctca aactccgctc gcaaagttcg
     1981 ccagcatctt caatcccacc gcctggctct tctcaggatg aaactgcacg ccacacacat
     2041 tcccttttgc gactacggac gcgtactgaa caccatagtc tgtctcgcca acaatcacgt
     2101 catcactcgc cggctcgcag taatatgaat gcacgaagta gcaaaacgcc tcatcctcaa
     2161 taccagcgaa taaacgatgg gccttgcgct gtcggatctg attccacccg acttgaggta
     2221 caacgagttt ggtatcatca aatcgtcgga cgcgccctgc gatgaaaccg agtccctcgc
     2281 acgtcccaaa ttcttccgac tcttcaaaca gcatctgcat cccaacgca
//
LOCUS       DATCGC010001491         1082 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_120910, whole genome shotgun sequence.
ACCESSION   DATCGC010001491 DATCGC010000000
VERSION     DATCGC010001491.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1082
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120910"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..570)
                     /locus_tag="VIJ87_14330"
     CDS             complement(<1..570)
                     /locus_tag="VIJ87_14330"
                     /EC_number="2.4.2.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008479 - tRNA-guanosine(34) queuine
                     transglycosylase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HEY5445612.1"
                     /translation="MSLPAISFEITAQDGEARTGLLSTRRGVIETPVFMPVGTAGTVK
                     AIRFEELESPDLDAKVILGNTYHLWLRPGVETIKACGGLHRFIGWDRALLTDSGGFQV
                     WSLGDLRKISEEGTEFRSHVDGSLRFLSPEVSMEVQAALGSDIVMVFDECAPGDASHE
                     ETEKSVGLTARWARRSREAFNRLQFEVADT"
     gene            complement(573..>1082)
                     /locus_tag="VIJ87_14335"
     CDS             complement(573..>1082)
                     /locus_tag="VIJ87_14335"
                     /inference="COORDINATES: protein motif:HMM:NF026064.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445613.1"
                     /translation="ALDAGCSIIIGVNKWDAVENKDTSTPYEFERTLRDRMKFLEWAP
                     VITISALSGQRVDRILPIVRKAYEARHRRIPTAQLNDFFERAISQPRGGTAPSPAKGG
                     FSRLHVQYLTQVGIRPPTFVVFTSGGKPGLHFSYERYLLNRLREQFDFFATPLRVIEK
                     HKRKKRAGA"
BASE COUNT          255 a          309 c          267 g          251 t
ORIGIN      
        1 cgtatcagca acttcaaatt gcaatcggtt aaatgcttcc ctcgaccgtc tggcccaacg
       61 agcagtaagc cctacgctct tttcagtctc ttcgtgactc gcgtcgcctg gcgcacactc
      121 gtcaaacacc atcacaatgt cggagcctag ggccgcctgc acttccatcg acacttcggg
      181 cgacaaaaac cgaagactgc catcaacgtg ggatctgaac tcggtacctt cttctgagat
      241 ctttcgaaga tcacccaagc tccaaacctg aaatccgcca gagtccgtaa ggagcgcacg
      301 atcccaacca ataaacctgt gtaagccgcc gcacgccttt attgtctcaa cacccggtcg
      361 cagccagaga tgataggtat ttcccaggat gactttggcg tcgagatctg gtgattccaa
      421 ttcttcaaaa cgaatcgcct tgactgtgcc cgcggtacca accggcatga acacaggcgt
      481 ttcgataacg cctcgacgcg tggataacaa acctgttcgc gcctcgccat cttgcgctgt
      541 tatttcgaat gagattgcag gaagactcaa cgctatgccc cagccctctt cttgcgcttg
      601 tgcttttcga ttactcgtag cggagtggca aagaagtcaa actgttctcg gagtcgattc
      661 aggaggtatc gttcgtagga gaaatgcaag ccaggtttac cgccagaggt gaagacaaca
      721 aaggtcggtg gtcgtatgcc aacctgggtg aggtactgga cgtgcaaccg cgagaaccct
      781 ccctttgcag gggatggggc cgtgccaccc cgaggttgcg aaattgctcg ttcgaagaag
      841 tcattaagtt gtgctgtggg aatacgtcgg tgtcgagctt cgtaagcctt gcgcacaatc
      901 ggcagaatgc gatcaacccg ttgtccactt aaagctgaaa tcgtgataac gggcgcccac
      961 tccaggaact tcattcgatc ccgcaaagtt ctttcaaact catatggcgt gctcgtgtcc
     1021 ttgttctcga ctgcgtccca cttgttcacg ccgataatga tcgagcaacc ggcgtctaag
     1081 gc
//
LOCUS       DATCGC010001492         1121 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_487616, whole genome shotgun sequence.
ACCESSION   DATCGC010001492 DATCGC010000000
VERSION     DATCGC010001492.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1121)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1121)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1121
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_487616"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            238..>1121
                     /locus_tag="VIJ87_14340"
     CDS             238..>1121
                     /locus_tag="VIJ87_14340"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY5445614.1"
                     /translation="MYISPPGRRSDLWRSLPFSRIAFSALLTFTFLSSAILSVSAQTP
                     HTAAISVVVVDQDGAVVKDAKVSVVNDATGAARDVVSGSEGSATIPGLSLTGTYTVTV
                     SKEGFSNEERKDITLRSGETATLRVTLMVGSSKAEVTVFGTAESVHSNPQIGLPINST
                     QINETPILGRKVTTLPLLNSAFRQGKGTGDLFVNATYFITGVGSRRATTFTLDGANND
                     EAWGRQTAIATLPISAVQEVSVLSNAFSAEYGWTSGPALNFVTKSGTNDLHGEGLFLF
                     RPGGWQAKTFSTDGFCPPS"
BASE COUNT          269 a          293 c          278 g          281 t
ORIGIN      
        1 aggtaagtaa cacaccttgg cttgttcctg cttttgcgtt tgagtctagt tcaatacgat
       61 ctgcgcgcta ttagttgagc catacgctac cacgctgtgg tactgactat cccatacatt
      121 ccgctaatag ctttacgacg gctggtagta attgggttag cagcctaact tcttcacgct
      181 cgtccttacc aatcaaatac aaaagtattc gaaagtcaga agttagcgga gaaacaaatg
      241 tacatatcac ccccgggtcg ccgatctgat ttgtggcgtt ctcttccttt tagtcggatc
      301 gcctttagcg cgttactaac gttcaccttt ttaagttcag caattttatc ggtcagtgca
      361 caaacgccac acacggcggc tatcagtgtg gtcgtggttg atcaagacgg cgccgttgtt
      421 aaggatgcga aggtctcggt cgtaaacgat gcgactggcg ccgcgcgcga tgttgtttcc
      481 ggaagcgagg gctctgcaac gattccggga ttgtcactca ccggaaccta cacggtgact
      541 gtttccaagg aaggattcag caatgaagaa cgtaaggaca tcacattgcg ttcgggtgaa
      601 acagcgacat tgagagtaac gctgatggtt ggttcgtcaa aagctgaagt taccgtcttt
      661 ggcaccgccg aaagtgttca ctccaaccca cagattggcc tcccaataaa cagcacgcag
      721 atcaatgaaa caccgatcct cggacgtaag gtcacgactc taccactcct gaattccgcg
      781 tttcgccagg gcaaaggcac aggcgacctt ttcgtgaacg ccacctattt catcactggc
      841 gttggctcac gacgcgctac tacgttcacc ctcgatggtg caaataacga tgaggcgtgg
      901 gggcgacaaa ctgcgattgc aacgttgcca attagtgccg ttcaagaagt gtcggtgctc
      961 tcaaacgcgt tctctgccga atacggatgg acctccggac cagctttgaa cttcgtaacc
     1021 aagtcgggaa caaatgatct acatggcgaa gggctgtttt tgtttcggcc cggtggctgg
     1081 caagctaaaa cgttttcaac cgacggcttt tgtcccccct c
//
LOCUS       DATCGC010001493         1097 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_55462, whole genome shotgun sequence.
ACCESSION   DATCGC010001493 DATCGC010000000
VERSION     DATCGC010001493.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1097
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55462"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1097)
                     /locus_tag="VIJ87_14345"
     CDS             complement(<1..>1097)
                     /locus_tag="VIJ87_14345"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015049.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MBOAT family O-acyltransferase"
                     /protein_id="HEY5445615.1"
                     /translation="LTILLASYYFYALWNPTFVPLLIAISSIDFLTARGITASTSARL
                     RRLLLFTSIVTDIGTLVVFKYFNFFSASATTLLEGLHIQTRSFLIEDLVIPLGLSFIT
                     FRSLSYVIDVYRKTTKSTNRYFDYLAFVAFFPTLIAGPVVRSKDLLPQFETAALSNEQ
                     GVEAIFLILVGLIKKVAIADMIGTNLVDRVFDQPELYSSLETLAAIYGYALQIYCDFS
                     GYSDIAIGSALLLGFKLPTNFNSPYRAQNLRDFWKRWHMTLSTWLFDYVYISIGGLRK
                     RRFNLYRNLVLTFLIGGLWHGAAWTFVIWGALHGLGLSVSHWWNRRNTTVSTGSDSDR
                     LHSRILPAWWVKAICTIATFHFICFTWIVFR"
BASE COUNT          297 a          242 c          326 g          232 t
ORIGIN      
        1 gcgaaagacg atccaggtaa agcagatgaa gtggaacgtt gcgattgtgc aaattgcctt
       61 gacccaccag gcaggtagga tgcgagagtg gagccggtcg ctatcgctcc cggtactgac
      121 tgtggtgttt cgtctgttcc accaatggct gactgaaagt ccaagtccgt gcagcgcgcc
      181 ccagataaca aaggtccacg cagcgccgtg ccaaagaccg ccgatgagaa atgtgaggac
      241 gaggtttcga taaagattga agcgtctctt tctcaatcca ccgatcgaga tgtagacgta
      301 atcaaagagc caggtagaaa gcgtcatatg ccaacgcttc caaaagtccc gcaggttctg
      361 tgcgcgatag ggtgagttga aattggtcgg gagtttgaat cccagtagta atgccgagcc
      421 gatggcgatg tcgctatagc ccgagaagtc gcaatagatc tggagcgcgt aaccgtagat
      481 cgcagccagc gtctcaaggg acgaataaag ttctggttga tcgaagacgc gatctacaag
      541 gttagtgccg atcatgtcgg cgatggcgac ttttttaata agcccaacaa gtatcaggaa
      601 gattgcttcg acgccttgtt cgttcgacag tgctgctgtc tcaaactgcg gtaaaagatc
      661 tttgcttctc acgacaggtc cggcaatcag tgtcggaaag aacgcgacaa acgccaggta
      721 atcgaaatag cgattggttg acttcgtagt cttgcgatag acgtcgatta catagctcag
      781 cgaccgaaaa gtaatgaacg ataagccgag aggaatgacg aggtcctcga tgaggaagga
      841 cctcgtttgt atgtggagcc cctcaaggag cgtcgtggcg gaagcgctga agaagttgaa
      901 gtacttgaaa actaccaggg tgccgatgtc agtaacgatg ctggtgaaca acagcaggcg
      961 ccgcaggcgt gcgcttgttg atgccgtgat gccgcgggcc gtcagaaagt cgatagatga
     1021 aattgcgatt aggagcggaa cgaatgttgg gttccaaagg gcgtagaagt agtaactcgc
     1081 aagcaggatg gttagaa
//
LOCUS       DATCGC010001494         1179 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_487655, whole genome shotgun sequence.
ACCESSION   DATCGC010001494 DATCGC010000000
VERSION     DATCGC010001494.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1179)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1179)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1179
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_487655"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1179
                     /locus_tag="VIJ87_14350"
     CDS             <1..>1179
                     /locus_tag="VIJ87_14350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445616.1"
                     /translation="DAERAGDFRGLVRTNSGWLPQSVVNQFASQNANAVASVGPSAIY
                     QQYTINNGRLVPIVLSGGRWFCQFGATAAQGMTLVNGQPQCAANTPVVDSLNVIPTQF
                     VDPIAAKLIKFQPSGTGYFLDNGVVRNAVLNRQVNQNETRYTLRLDHQLTQSNRINFR
                     YTKTPAIGVRNFGSDVNGSTGVFSDAKQLLLGDDHTFSSTIVNSLKLNYTRGVFSEDF
                     APEFSISGGRNLATELGIPSVTQGGIPLFQISLDGASSYNAFADIGSSGSTNNFNVEE
                     RFNINDVLYWTQGNKTWKFGVDISRARLNVVPFFGASGGRWEFRTLNTDRTRANNVAA
                     GGNSLASLLIGVPNAVQVRPLLVNYDYRWDAGAAFVQNDWRVRPNLTVNLGLRYSLQL
                     P"
BASE COUNT          279 a          300 c          311 g          289 t
ORIGIN      
        1 gacgcggaac gggcggggga ttttagaggc ctcgttcgca caaacagcgg ttggcttcca
       61 caaagtgttg tcaatcaatt tgcttctcaa aacgcaaatg cagttgcttc ggtggggccg
      121 tcggcaattt accagcagta caccatcaat aacggtcggt tagttccgat tgtactcagc
      181 ggtggcaggt ggttctgtca gtttggggca actgccgcgc agggaatgac cctcgtcaac
      241 ggtcaaccgc agtgtgcggc aaacacgccg gtagttgatt cgttgaacgt catcccgacg
      301 caattcgtcg atcctattgc cgcgaagcta atcaaattcc aaccttccgg cacaggctac
      361 tttctcgaca atggcgtggt gagaaatgct gtcctgaacc ggcaggtaaa ccaaaacgag
      421 actcgctaca ctttgcgact ggaccatcaa ctcactcagt ccaatcgcat caatttccgt
      481 tacacaaaaa ctcctgcgat tggcgtgcga aactttggta gtgatgtgaa tggcagcacc
      541 ggcgtgttca gtgatgctaa gcaacttctg ctgggtgacg atcacacttt ctcgtcgaca
      601 attgttaaca gcttgaaact gaactacacg cgcggtgtat ttagtgagga ttttgcccct
      661 gagttttcaa ttagcggcgg ccgcaacctt gcaaccgaat tgggaatccc cagcgtgaca
      721 caaggtggca taccgctctt ccagatcagc cttgatggtg cttcgtcata caacgcgttt
      781 gctgatattg gctcatcggg ttcgacaaac aacttcaacg ttgaagagcg tttcaatatc
      841 aacgacgtgc tctattggac acagggaaat aagacatgga agttcggcgt tgacataagc
      901 cgcgcgcgat tgaacgtggt tccgttcttt ggcgcatccg gcggacgttg ggagttccga
      961 acgctgaata ctgatcgcac tcgggccaat aacgttgccg caggtggcaa cagcctggcg
     1021 agtttgttga ttggcgttcc caatgcagtg caagtgcgac cactgctcgt caattacgat
     1081 tatcgttggg atgcgggcgc agcatttgtt caaaacgatt ggagggtgcg tccaaacctg
     1141 accgtaaatc tcggtcttcg ttactcgtta cagctacca
//
LOCUS       DATCGC010001495         1446 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_89018, whole genome shotgun sequence.
ACCESSION   DATCGC010001495 DATCGC010000000
VERSION     DATCGC010001495.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1446)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1446)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1446
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89018"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..253)
                     /locus_tag="VIJ87_14355"
     CDS             complement(<1..253)
                     /locus_tag="VIJ87_14355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014393940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HEY5445617.1"
                     /translation="MFSFIWLLVIGLVAGLLARLLMPGKDAMGLLATLVLGVVGSVLG
                     GVISWAIWGASSGNTIHPSGLIMSIVGAFLVLLLWRMVKG"
     gene            complement(296..877)
                     /locus_tag="VIJ87_14360"
     CDS             complement(296..877)
                     /locus_tag="VIJ87_14360"
                     /inference="COORDINATES: protein motif:HMM:NF017853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF937 domain-containing protein"
                     /protein_id="HEY5445618.1"
                     /translation="MNAITQMITQQLTGNAVNTIAQRLGVSEATANRAVQIAVPLLVA
                     ALARNAAQPQGAQDLHQAINKDHDGSIFDNLMGHLGNPDSGNGAGILAHVFADQQSSI
                     QGNLAQATGMDQSAAGGLLETLAPLVMGAVGQTQQQNGLDASGLSAMLNGQQQEAQSN
                     APDVMGMLGSMLDQNKDGNAIDDLQRLAANFFK"
     gene            1083..1367
                     /locus_tag="VIJ87_14365"
     CDS             1083..1367
                     /locus_tag="VIJ87_14365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445619.1"
                     /translation="MDRSTQPLGDNCPSAPRLNLKKFSTKTRHLSPKLAHSFDPTGVK
                     MIRKLKSGKYRLYSSKKDPKTGKRKNLGTFDSRAAAEKHERDVQYFKRAG"
BASE COUNT          374 a          393 c          354 g          325 t
ORIGIN      
        1 gacccttcac catccgccag agcagcaata ccaggaacgc tccgacgatt gacattatca
       61 gtcccgacgg atgaatagtg ttccctgacg atgcgcccca aatcgcccaa ctgatcacac
      121 cgcccaggac cgagccaacg actccaagta cgagcgtcgc tagcaagccc attgcgtctt
      181 tacccggcat gagcaatcgc gccagtagac ccgccacaag accaattaca agcaaccaaa
      241 tgaagctgaa catgtctgtc tcctcctcaa atttgaaaaa gaacaatcag acgactcact
      301 taaagaaatt cgcggcgagt cgttgaagat catcgatcgc gttcccatcc ttgttttgat
      361 ccaacattga accaagcatt cccattacgt cgggagcatt gctttgtgct tcctgctgtt
      421 ggccgttcag cattgccgag agaccggaag cgtcgagccc gttttgttgc tgagtttgac
      481 ccaccgcacc catcacgagt ggcgccaatg tttccaacaa ccctccggcg gcgctttgat
      541 ccattcctgt agcctgcgcc aggtttccct gaattgaaga ttgttgatcg gcaaaaacgt
      601 gcgcaagtat cccggcgccg tttccgctgt caggatttcc gagatgaccc atcaagttgt
      661 cgaagatgct gccatcgtga tctttattaa ttgcctggtg aagatcctgt gctccttgcg
      721 gctgagctgc gtttcgagcc aacgctgcca ccagcaatgg aaccgcgatt tggactgccc
      781 tgtttgcagt cgcttcgcta acgcccaggc gctgggcaat tgtgttaacc gcgttgccag
      841 tcagttgctg cgtaatcatt tgggtaattg cattcatggg tagattcctt tgacgagtag
      901 ttcttcgcgt tccgcgattt ggggaatcgc tctgcactgc cgggcatggt taacctttgg
      961 aatgtcgatg tgggtgtatg ttacacccgt cggcaggaaa gtagatatgt gaaatcagcg
     1021 tggcttctat ataaaacgcc gagggctctg agatgcaggc acacggagag aagaaaaacc
     1081 ttttggatag aagcacgcag ccgctcggcg ataattgtcc ttccgcaccg cgactcaatc
     1141 tgaagaaatt ctcaacaaaa actcggcacc tttctccgaa actagcccac tcattcgatc
     1201 caacgggggt aaagatgatt agaaaactca agtcgggcaa atacaggctc tactccagca
     1261 agaaagatcc caagacaggt aaacgaaaga atctcggaac gtttgattcg cgcgcagccg
     1321 cagaaaagca tgaacgcgac gtccaatact tcaagcgagc cggatgaaca gttgaactaa
     1381 cgaccgatgg acaagcatag ttcaagctca agaggctctt gcaaatagaa ccagtaggga
     1441 agggcg
//
LOCUS       DATCGC010001496         1204 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_153377, whole genome shotgun sequence.
ACCESSION   DATCGC010001496 DATCGC010000000
VERSION     DATCGC010001496.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1204
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_153377"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            336..>1204
                     /locus_tag="VIJ87_14370"
     CDS             336..>1204
                     /locus_tag="VIJ87_14370"
                     /EC_number="7.5.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HEY5445620.1"
                     /translation="MTEGKTILEARNIYKSYDGVDALRGVSFELRAGEVHALIGENGA
                     GKSTLIKIFTGAIQADAGEVEFDGKLITSNSPAHAKSIGIAAIYQQPALFPELTVAEN
                     ISIGLEAAGAWRKIDWRKRRTRAAQLLGQVGARIDPDSEVRSLSMPEQQLVEIARALG
                     ANSRVLIMDEPTASLAEEETQNLYRVIAKLRDSGVGIVYISHRLEELAIVADRVTVLR
                     DGSYVGTQPMANVDRQELIRLMVGRDLSTVFPKVTVKQGPVAFELRGVSCKANGVEGI
                     DLAVRAGEIVGFAG"
BASE COUNT          297 a          278 c          339 g          290 t
ORIGIN      
        1 tcatttgttt gccgacgaga ctaatatggc ccaatgtccg atatgcttta gagattcttg
       61 caaaactctc attctcccca agcttcagct tggggttatg gtgcgcgctc atcactcagg
      121 aaccgcttca acggtttacc cggtgtgcga atgaatccga gcgttaatga acttctgcgt
      181 gcttagatgg ctagaaaatc gtaaaccgtt aaaacggttg ctcacaattg gggctcgact
      241 gtaaccctaa gctgaagctt gtggagaatg agagttttgc aagaatctct aaagcatatc
      301 ggacattggg ccatattagt ctcgtcggca aacaaatgac tgaaggcaaa accatcctcg
      361 aggcgcggaa tatctacaag tcatacgacg gcgtcgatgc tctgcgtgga gtttcgtttg
      421 agttacgtgc gggtgaagtt cacgcgctaa tcggtgagaa cggtgcaggg aagtcgacgc
      481 tgatcaagat ctttaccggg gcaattcaag cagacgccgg tgaagttgaa tttgatggca
      541 agctaattac cagcaactcg ccagcgcacg ctaaatcaat tggcatcgcg gctatctatc
      601 aacagcccgc gttgtttccg gaactgaccg ttgccgaaaa catttcaatt ggactcgaag
      661 ccgccggcgc atggcgaaaa attgattggc ggaaacgacg aacacgagcc gcacaactgt
      721 tgggtcaggt gggcgcgaga atcgatcctg acagtgaagt gcgttcactt agcatgcccg
      781 agcagcaact ggtggagatc gcacgcgcgc tgggtgcgaa ctcaagagtt ctgatcatgg
      841 acgagccaac cgcatcgttg gctgaagaag aaactcaaaa cctttatcga gtgatcgcta
      901 agctcaggga tagtggtgtc gggatcgttt acatctcgca tcgtctcgaa gaactggcaa
      961 tcgtggctga tcgtgtcacc gtcctccgcg atggttcgta tgttggcact cagccaatgg
     1021 caaacgttga tcgccaggaa ctcattcggc tgatggttgg acgcgacctg tctactgtct
     1081 ttcccaaggt gacggtaaag cagggtccgg ttgcgtttga gttacgtggt gtgtcgtgta
     1141 aagcaaatgg agttgaagga attgatttgg ctgtcagagc gggagagatc gtcggctttg
     1201 ctgg
//
LOCUS       DATCGC010001497         1237 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_354964, whole genome shotgun sequence.
ACCESSION   DATCGC010001497 DATCGC010000000
VERSION     DATCGC010001497.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1237)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1237)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1237
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_354964"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..247
                     /locus_tag="VIJ87_14375"
     CDS             <1..247
                     /locus_tag="VIJ87_14375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445621.1"
                     /translation="NLKVPFDYRLRPRYRAEQSLCWFRSTAREHLARAWEIVMILEER
                     DIYVCCVKFLEVGQILYQDDVQVLAFPDRDLRRRFKR"
     gene            255..>1237
                     /locus_tag="VIJ87_14380"
     CDS             255..>1237
                     /locus_tag="VIJ87_14380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445622.1"
                     /translation="MANKTLFKSLIGKLMPATDALNEHQAPAYALSPKHQLAQYAATG
                     CLNRTFYVSAEGQLAKVLELCEQVDAEFIAKLAVFSRERGYMKDMPALLCAVLSVKDR
                     NLLNAIFPRVIDNARMLRNFVQIMRSGVVGRKSLGTAPKRMVREWLDARDPVSLFKAN
                     VGQDPSLADIVKMVHPKPRDANREALFGYFIGRDHNIEALPELVRSFEAFKKGAVNDR
                     GDVPDVPFQMLTALELGTKEWTEIARRAPWQMTRMNLNTFARHGVFRDPEMVEIVATR
                     LRDKAKIAKARVFPYQLMVAYSMATSNANIPQEVCNALQDAMEVATDNVPE"
BASE COUNT          286 a          312 c          357 g          282 t
ORIGIN      
        1 gaatctcaag gtgccgttcg actacaggtt gagaccacgg tatcgagctg agcaatcgct
       61 ttgctggttt cgttcgacgg cgcgcgaaca tctggcccgc gcctgggaga tcgtcatgat
      121 tctggaagag cgtgacatct acgtctgttg tgtgaagttt ctagaggtag gtcagattct
      181 ttatcaagat gatgtgcaag tactcgcatt tcccgacagg gatctgcgaa gaagattcaa
      241 gaggtaatac gacaatggca aacaagacac ttttcaagtc actaatcggc aagcttatgc
      301 cggcaaccga tgcgctcaac gagcaccagg cgccagctta cgcactatcg ccaaagcacc
      361 agcttgcgca atacgccgca actggctgtc tgaaccgcac gttctatgtg agtgctgaag
      421 gacaactcgc taaagtgctc gaactgtgtg aacaggtcga tgccgagttc atcgcgaagc
      481 ttgccgtgtt tagtcgtgag cgcggttaca tgaaggatat gccggcgttg ctttgtgccg
      541 tgttatccgt aaaggatcgc aatctactaa acgcaatctt tccccgcgtg atcgacaacg
      601 ccaggatgct gcgcaacttc gtgcagatca tgcgttcggg cgtggttggt cgtaagtcac
      661 ttggtactgc gccgaagcgt atggtgcgag agtggctcga tgctcgtgat cccgtttcgt
      721 tgttcaaggc gaacgttggt caagatcctt ctctggcgga catcgtgaag atggtccacc
      781 cgaagccaag ggacgcgaac cgcgaagcgc tgtttggcta cttcatcggt cgcgaccaca
      841 acatcgaggc gctgcccgag cttgtgcgca gctttgaagc gttcaagaag ggagccgtga
      901 acgatcgcgg cgatgttcca gacgtgccat tccagatgct gactgctctt gaactgggaa
      961 cgaaggaatg gaccgagatc gctcgtcgtg ccccatggca gatgactcgg atgaatctca
     1021 acacattcgc gcgtcatgga gtgtttcgtg acccggaaat ggttgagatc gttgcgactc
     1081 gtctgcggga taaggcaaag attgcgaagg cccgagtgtt tccgtaccag ctgatggttg
     1141 cttactcgat ggcgacatcg aacgcaaaca tccctcagga agtgtgcaat gcgctccagg
     1201 atgcaatgga ggtcgcaaca gacaacgtac ctgagtt
//
LOCUS       DATCGC010001498         1396 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_419647, whole genome shotgun sequence.
ACCESSION   DATCGC010001498 DATCGC010000000
VERSION     DATCGC010001498.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1396)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1396)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1396
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_419647"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..406
                     /locus_tag="VIJ87_14385"
     CDS             <1..406
                     /locus_tag="VIJ87_14385"
                     /inference="COORDINATES: protein motif:HMM:NF012610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEY5445623.1"
                     /translation="SAMSNIFSLSPSHPMPLYAQLTRAIQFAIATGRLRIGEQLPTVR
                     QLAVELRVNANTVAKVYAELERAGVLETRRGVGTFVCARHFEARNSQDHESVLKELVD
                     RFIEEANAMGFSPDDLLDQLQSRRKKETEENV"
     gene            399..1334
                     /locus_tag="VIJ87_14390"
     CDS             399..1334
                     /locus_tag="VIJ87_14390"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="slipin family protein"
                     /protein_id="HEY5445624.1"
                     /translation="MSNTSLIQTRGNLPTTNTPRVNVVSAVSFLIPAAIGILVTLASV
                     GFNPAGAIVGVLLGLLLAQSPKIARQWERAVVLRLGRYVGLRGPGLFWIIPFVDSISA
                     WVDQRVITTSFAAEETLTSDTVPVNVDAVLFWMVYDPEKAALEVQNYPQAVSWAAQTG
                     LRDIIGRTSLTDLLRGRERIEEELQQLIDERSNPWGVTVQSVEMRDVIIPAALQDAMS
                     REAQAAREKQARIILGQAEVEIAHSFETAARSYQNNPTALHLRAMNMLYEGLKEKGAL
                     MLVPSSAVESMGMGGLMGAAALRQQVLTGSDEKPE"
BASE COUNT          349 a          341 c          395 g          311 t
ORIGIN      
        1 gtcagcaatg agcaacatct tttcattgag cccctcgcat ccgatgccgc tttacgcgca
       61 gctgacgcga gcaatccagt ttgccatcgc gaccgggagg ctcaggattg gcgagcaact
      121 tcctaccgtt cgccaacttg ccgtagaact tcgtgttaac gccaataccg tagcgaaggt
      181 ctatgccgaa ctggaacgag caggggtact cgagacgcga agaggcgtcg gaacgtttgt
      241 gtgcgcccgc catttcgaag caaggaatag tcaggatcac gagagcgtac tgaaagaact
      301 tgtcgaccgt ttcattgaag aagcgaatgc gatgggtttc tcgcctgatg atctgcttga
      361 tcaacttcaa agcaggcgca aaaaggagac tgaagaaaat gtctaacact agcctgatcc
      421 aaaccagggg taacttgcca acgacgaaca ccccaagagt aaacgtcgtg tctgccgtat
      481 cgttcttgat tcccgctgcg attggaatcc tggtgactct agcatcagtg gggttcaacc
      541 cagccggagc gattgtcggt gtgttgttag gactgctgct ggcccaatct ccaaagattg
      601 cgcgccaatg ggaacgcgct gtggtgctgc gactaggtcg atatgttgga ttacgcggtc
      661 ctggtttgtt ttggatcatt ccctttgttg attccatttc tgcgtgggtg gatcaacgag
      721 ttatcaccac gagtttcgcc gctgaagaaa cactgacgtc agacacggtg ccagtaaacg
      781 tcgacgcggt gctcttttgg atggtttacg atcctgagaa ggcggcgctg gaagtacaaa
      841 actatccgca agctgtaagt tgggcagcac agactggatt acgagacatc atcggcagaa
      901 cctcgctgac tgatctcttg cgcggacgtg aacgcatcga agaagagttg caacagctaa
      961 ttgacgagcg ttcaaatcca tggggcgtca cagttcaatc agtcgaaatg cgtgacgtga
     1021 ttattcctgc cgcgctgcaa gacgcgatgt cacgtgaagc gcaggcggct cgcgaaaaac
     1081 aagcgcgcat tatccttggt caagccgaag tggaaattgc ccactcgttt gagactgcgg
     1141 cgcgatccta ccaaaacaac ccgacagcgt tacaccttcg agcaatgaac atgctctacg
     1201 aaggattgaa ggaaaaaggc gcgttgatgt tagtgccgag tagtgcggtt gagtcgatgg
     1261 gaatgggtgg actgatggga gccgcagctt tacgtcaaca agtactgacc gggagtgacg
     1321 aaaagcctga atagcgtgtg gcacagactt tagtctgtgt agtgacgaaa tgagccccgc
     1381 tcgattaaca ctcggg
//
LOCUS       DATCGC010001499         1225 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_487706, whole genome shotgun sequence.
ACCESSION   DATCGC010001499 DATCGC010000000
VERSION     DATCGC010001499.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1225
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_487706"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            266..1027
                     /gene="agaR"
                     /locus_tag="VIJ87_14395"
     CDS             266..1027
                     /gene="agaR"
                     /locus_tag="VIJ87_14395"
                     /inference="COORDINATES: protein motif:HMM:NF040755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor AgaR"
                     /protein_id="HEY5445625.1"
                     /translation="MLNVERHSKIIELIARQGKVEVQELSRLFQISAVTIRNDLKDLH
                     KRGLVRRAHGGAVRIETVNVDATLQVKASLRADEKQRIGAAAAALIKDGDSVILDSGT
                     TTQHIAKQIKDRKDLTVITNGINIAMELLGVKDVRLVLLGGMVRQNSYSAVGHFAEDM
                     LRQLSADKLFLAVDAFDLDFGLSTPNPEESKVNQAMVQIATETILVADSSKFGKRSLS
                     RIVPLSAIHKIITDSSLAPDFEASLRARGVEVVMV"
     gene            complement(1031..>1225)
                     /locus_tag="VIJ87_14400"
     CDS             complement(1031..>1225)
                     /locus_tag="VIJ87_14400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445626.1"
                     /translation="EKRLANLGIGLQLDTSVADCYRPPLDVLIGQLFGLFASIELGLK
                     PDAPSPSGAISRVVSKVNIY"
BASE COUNT          338 a          302 c          280 g          305 t
ORIGIN      
        1 gctggtccac ttacgatctt gaacttgacc ctcccggtcc catcagaaat cggactttcg
       61 aacccactca gtcttagtct tcgtttactt tcatttttaa tcaaatatcg agaccttctt
      121 gacaactgct ttagatacaa cgaatattag gtttcgaaac tgctagaact gggcgcctta
      181 ccttgggaaa ttgcgggatc acttgaaact caattccact caaacaatgc actcaacctc
      241 cgaagcggtc tcaggggaaa atcgcatgtt aaatgtggag cgtcactcca aaatcattga
      301 actcatcgcc cggcagggaa aagttgaggt gcaggaacta agtcgacttt ttcaaatctc
      361 ggcagtaaca atccgaaatg accttaagga tcttcataaa cgcggactcg tccgtagggc
      421 ccacggcggt gccgtgcgaa ttgaaacagt aaatgtcgac gccactctgc aagttaaagc
      481 atctctccgt gccgatgaaa aacaacgaat cggcgcagcc gccgccgcgc ttatcaaaga
      541 tggcgattca gttattctcg attcggggac aacaactcaa cacattgcca agcagataaa
      601 agatcgaaag gatcttacgg tcatcactaa cggaataaac atcgcaatgg agttgttagg
      661 tgtaaaggat gttcggcttg ttcttttggg cggaatggtg cgtcagaatt cgtattctgc
      721 cgtgggacat ttcgccgaag acatgctacg ccagctttcc gcagacaaac ttttcctcgc
      781 tgtagacgca ttcgatctcg attttggcct cagcactcca aatccggaag aatcgaaagt
      841 caatcaggca atggtccaaa ttgcgacgga gacgattttg gtggcagact cgagtaagtt
      901 cggaaagcgc agcctttcta gaatcgtgcc gctttccgca atacacaaaa taattaccga
      961 ttcttctttg gcccccgact ttgaagcctc cttacgcgct cgaggagtag aggtagtgat
     1021 ggtttagggg tcaatagata ttcactttgc taactacccg actgatggct ccgctcggac
     1081 taggagcatc tggtttcaac cctaattcga ttgaagcgaa aaggccaaaa agttgcccga
     1141 tgagaacatc aagcggtggc cgatagcaat cagcgaccga agtatcaagt tggagcccaa
     1201 tacctaaatt tgctagcctt ttttc
//
LOCUS       DATCGC010001500         1109 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_55514, whole genome shotgun sequence.
ACCESSION   DATCGC010001500 DATCGC010000000
VERSION     DATCGC010001500.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1109
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55514"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1109)
                     /locus_tag="VIJ87_14405"
     CDS             complement(<1..>1109)
                     /locus_tag="VIJ87_14405"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY5445627.1"
                     /translation="IVTTQARALLDDLDQLPYPDRDYEPEMVLGRSIMPILASRGCAR
                     TCSFCSIHTFYRAAPGRIVRTRKPAEVVREMRMLYEEQGITIFLFQDDDFPLFGQVWR
                     RWANEFVDELHRNELPGKVIWKMNCRADAVERELFIRMRDAGLYLVYMGLESGSEEGL
                     ETLHKQITVEQNIKAVNLLKDIGLMFEYGFMLLDPSSTFETIRENINFLRTILDDGCL
                     PVTFCRMLPYDGTPIKDELVRTGRIRGDICNPDYDFLDPKIGEFYEALTKVVSLTGWI
                     HGLKAVTNQLSWAWHEVATIERLFPALPGMLQYQEKLRRITKESNQFLLRVVEDLSYA
                     FSDNRENVWTPEVVEQHRDRFLDELLAERDAFVYR"
BASE COUNT          267 a          300 c          265 g          277 t
ORIGIN      
        1 ttcgataaac gaatgcatcg cgctctgcca gcaactcatc caggaaacgg tctcgatgtt
       61 gttcgacgac ttcaggcgtc caaacatttt ccctgttgtc tgaaaacgca tacgacaagt
      121 cttcaactac acgcagcaga aactggttgc tctctttagt tattcgtcgc aacttctcct
      181 ggtactggag catccccggc aacgctggaa acaatctctc gatcgtcgct acttcatgcc
      241 aggcccaact gagctgattt gttactgcct ttagcccgtg aatccatccc gtcaaactca
      301 cgacctttgt cagtgcttca tagaactcgc caatcttcgg atcgagaaag tcgtagtcag
      361 gattgcagat gtctccgcgt atgcggcccg ttcgcacgag ctcgtccttg atcggagttc
      421 cgtcgtaagg cagcatgcgg cagaacgtca cgggcaaaca cccgtcatcg agaatggtgc
      481 gcaggaagtt gatgttttca cgaatggtct cgaatgtgct cgatggatcc agcagcatga
      541 atccgtattc aaacatcaag cctatgtctt tgagcagatt cacagctttg atgttttgtt
      601 cgactgtgat ctgcttgtgc agtgtctcta atccttcttc acttcctgat tcgagaccca
      661 tgtaaaccaa atacagtcca gcatctcgca tcctgataaa gagttcgcgc tcaactgcat
      721 cggctcgaca gttcattttc caaatcactt tacccggcaa ctcgttgcga tgaagttcat
      781 cgacaaactc gtttgcccaa cgccgccaaa cttggccaaa gagcgggaag tcgtcgtcct
      841 gaaacaagaa gatcgtgatt ccctgttctt cgtaaagcat gcgcatctcg cgcacaactt
      901 ccgcaggttt gcgtgtgcga acaattcggc ccggagcggc tcgatagaac gtgtggatag
      961 aacagaagga acaagtgcga gcacaaccgc ggctggcaag gatgggcatg atgcttctgc
     1021 cgagaaccat ttctggttcg tagtcgcgat ctggataagg cagttgatcg agatcatcga
     1081 gaagcgcgcg cgcctgtgtc gtaacaatc
//
LOCUS       DATCGC010001501         1269 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_89048, whole genome shotgun sequence.
ACCESSION   DATCGC010001501 DATCGC010000000
VERSION     DATCGC010001501.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1269)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1269)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1269
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89048"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..330
                     /locus_tag="VIJ87_14410"
     CDS             <1..330
                     /locus_tag="VIJ87_14410"
                     /inference="COORDINATES: protein motif:HMM:NF013982.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF47 family protein"
                     /protein_id="HEY5445628.1"
                     /translation="RAIIIYDVKEITDYARDFADVIERMAEQLKEIVAILRRPKNVTQ
                     RLVEIHRLENEGDDIYHAAIAELFHDAHDALTVLKWKEVYEKLEAAVDRCENVANIIE
                     SVIIKHN"
     gene            438..>1269
                     /locus_tag="VIJ87_14415"
     CDS             438..>1269
                     /locus_tag="VIJ87_14415"
                     /inference="COORDINATES: protein motif:HMM:NF013543.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HEY5445629.1"
                     /translation="MSATLAFVIVLVFLALVFDYINGFHDAANSIATVVSTRVLSPGI
                     AVIWAAFFNFVAFAVFGTRVAKAIGDGVRMDIIPANERLYVLLAALLGAIIWNLITWY
                     LGLPTSSSHALLGGYAGAGIAAHGGVEGLLKPDVWLRTLKFIVLSPLIGMVLGFTLMV
                     IVYWVFRHFSAARVDKIFRRGQLLSAAAFSLGHGGNDAQKTMGIITAVLTAGGVWGLS
                     YGPNGTLPAIPISVVLAAHAAIALGTLSGGWRIVRTMGTRITKLKPVGGFCAETAAAL
                     T"
BASE COUNT          276 a          341 c          329 g          323 t
ORIGIN      
        1 cgggcgatta tcatctacga cgtcaaagaa atcactgact acgcgcgcga cttcgcggac
       61 gtcattgaac gaatggccga gcagttgaaa gagatcgtcg cgattctcag acgtccaaag
      121 aacgttacgc aacgtctcgt cgaaattcac cggctcgaga acgaaggcga tgacatctat
      181 cacgccgcaa tcgccgaact atttcacgac gcacacgatg cccttaccgt gttgaagtgg
      241 aaggaagtct acgaaaagct cgaagccgct gtggatcgtt gtgaaaacgt cgcgaatatc
      301 attgaaagcg taattatcaa acacaactaa actcggtctt gggtttttgg cctttggtct
      361 ttgattggtt ggtcaaccca agcgttctcg tcagcacaaa caaagaccta agaccaaagc
      421 caaagaccaa ctttcctatg tctgctactc ttgccttcgt catcgtcctc gtttttctcg
      481 cgcttgtttt tgattacatc aacggttttc acgacgccgc gaactcaatc gccacagttg
      541 tttccacacg tgtgctctcg cctggcattg cagtcatttg ggcggcgttc ttcaacttcg
      601 tcgcttttgc tgttttcggg actcgcgtag ccaaggccat tggcgatggt gtccgaatgg
      661 atatcatccc ggccaacgag cgactctatg tgctgctcgc tgctttgctc ggggcaatca
      721 tttggaacct cataacgtgg tacctcggat taccgacttc aagttcccat gctctgctcg
      781 gtggctatgc aggtgcaggc attgcagctc acggcggtgt cgaaggttta ctgaaacccg
      841 acgtttggct tcgcacactc aagttcatcg tgttgtcgcc actgattgga atggtgttgg
      901 gctttaccct catggtgatt gtctattggg tctttcgtca cttctcggct gcacgtgtag
      961 acaaaatctt tcgacgcggc caactccttt cagctgcggc tttctcgctg ggccatggcg
     1021 gcaacgacgc gcaaaaaaca atgggcatca tcaccgcggt tttgaccgcg ggcggtgtat
     1081 ggggattgag ttacggacca aacggaacct tgccggcgat ccccatatcc gtggtgttag
     1141 cggcacacgc agcgatcgct ttgggtacgt tgtcaggcgg ctggcgtatc gttaggacta
     1201 tgggaacgcg aatcacaaag ctcaaaccgg tcggtgggtt ctgcgctgaa actgccgccg
     1261 cgctaacac
//
LOCUS       DATCGC010001502         1457 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_55534, whole genome shotgun sequence.
ACCESSION   DATCGC010001502 DATCGC010000000
VERSION     DATCGC010001502.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1457)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1457)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1457
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55534"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1359
                     /locus_tag="VIJ87_14420"
     CDS             <1..1359
                     /locus_tag="VIJ87_14420"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEY5445630.1"
                     /translation="LILFLPIHCAAQDATTKAVDDFVQAEMKRQRLPGVSLAVVKNGA
                     IVYAKGYGYSNVEHQVTVKPETIFQSGSIGKQFTATAVMMLVEEGKVNLDEKISKYLG
                     EVPEAWQNITVRHLLTHTSGLTDYPSDFDFRRDYTEDELLKRAQAIPPDFKPGEKWQY
                     SNIGYVTLGVLIHKVTGQFYGDFLQERIFKPLKMTTTRIISEADIIPNRAAGYHIVKN
                     ELKNQDWVSPTLNTTADGALYFTVLDMAKWDAALYGETLLKKTSLQQMWTPVTLNNKK
                     TYDYGFGWGFSQINGHRIIEHGGAWQGFTSYIGRFVDDQLTVIVLDNLAGGNAGKIGR
                     HVASIFNPELGRKAIADKEPEVTAAIRELVAKLTLGNADPNSFTAEMRADSFSVRTER
                     VARLLKSLGPITRMDLVERSDKDGARVYGYQITFQNGSRFLKLSMTTENKIAALAFVD
                     DF"
BASE COUNT          388 a          387 c          357 g          325 t
ORIGIN      
        1 ctaattctct tcctccccat tcactgcgca gctcaggacg ccacgacaaa agccgtcgac
       61 gacttcgttc aagctgaaat gaagcggcag cgactcccag gtgtttccct ggccgtcgtt
      121 aagaatggtg caatcgtcta cgccaaaggt tatggctact ccaacgtcga gcatcaagtg
      181 accgtcaaac cggaaacgat ctttcaatca ggctcaatcg gtaagcagtt caccgccaca
      241 gccgtgatga tgctggttga agaaggcaag gttaatctcg acgaaaagat cagcaagtac
      301 cttggcgaag tcccagaagc gtggcagaac atcactgtcc gacatctgct tactcacact
      361 tccggactca ctgactatcc cagcgacttc gactttcgtc gcgactacac cgaagacgaa
      421 ctactgaaaa gagcccaggc aatccctccc gacttcaagc caggcgagaa gtggcaatac
      481 agcaatatcg ggtatgtcac cttgggggtc ctcattcaca aagtaaccgg gcagttctat
      541 ggcgacttcc ttcaggagcg aatctttaaa ccactgaaga tgaccacaac tcgcataatt
      601 agcgaagccg acatcattcc gaaccgcgcc gctggttatc acatcgtaaa gaacgaactc
      661 aagaatcagg attgggtttc gccaacacta aataccaccg ccgacggcgc gctctacttc
      721 acagtacttg atatggccaa gtgggacgcg gctctctacg gcgagacctt gctgaagaaa
      781 acaagtcttc aacagatgtg gaccccggtc acacttaata acaaaaagac ctacgactat
      841 ggttttggtt ggggtttcag ccagatcaac ggtcaccgga tcatcgaaca cggtggcgcg
      901 tggcaaggat tcacttctta catcggccgc ttcgttgacg accagttgac tgtaatcgtt
      961 ctggacaatt tggctggagg aaatgcaggc aagatcggtc ggcacgtagc ttcgatcttc
     1021 aatccggagc taggtcgcaa ggcaatcgcg gacaaggaac ctgaagtgac ggccgcaatc
     1081 agggagctgg tcgccaaact tacactaggt aacgcagatc cgaattcatt cactgctgaa
     1141 atgcgagctg actcattctc ggtgcgcact gagcgagtcg ctcggctatt gaaatcgttg
     1201 gggccaatta cgagaatgga tctggtcgaa cgcagcgaca aggacggagc ccgcgtctac
     1261 ggctatcaaa taacttttca aaacggcagc cggttcctga aactcagtat gactacggag
     1321 aacaagatcg cggcgttggc atttgtcgac gacttttaat ctacgcatct tctcagtgag
     1381 agttctactg cgcttagttt tgttttagct tgaaactgct cagtgcgtga tcttgaacgt
     1441 actcggtatt aacaatt
//
LOCUS       DATCGC010001503         2266 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_386922, whole genome shotgun sequence.
ACCESSION   DATCGC010001503 DATCGC010000000
VERSION     DATCGC010001503.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2266)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2266)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2266
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_386922"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..708
                     /locus_tag="VIJ87_14425"
     CDS             <1..708
                     /locus_tag="VIJ87_14425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445631.1"
                     /translation="TAPPPPAGDDSDPTRPVVWSLREEYYNLQGQAWNNAFFFRVDRA
                     VFKERRRPLGKSGVLTRLDIPFVVTHRADGTSAGLGDIYAQAFVLPYRQGKLVWAAGS
                     GVFIPTATSRRLGTGKLTIAPVIAPVRFIPKRGFFLVKVQDFFSVAGANDRPDLHYMT
                     ITPLLVWRLKNKPYWVQVDSETQTFWNRDNHTSYKAGFLLGRITKRRGVWIKLEVGMG
                     PYRSQSLAIKTSIFRVR"
     gene            846..>2266
                     /locus_tag="VIJ87_14430"
     CDS             846..>2266
                     /locus_tag="VIJ87_14430"
                     /EC_number="3.1.6.-"
                     /inference="COORDINATES: protein motif:HMM:NF013080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arylsulfatase"
                     /protein_id="HEY5445632.1"
                     /translation="MSPKLRTVIQLVLFGAITLFVFSCAKEATETSTSTSSDGLDRTN
                     LPIKEPARQTYKELDARNAKAPARWEVKAPQGAPNVVVVLIDDIGFGASSTFGGPINM
                     PNLEKIAATGLKYNRFHTTSLCSPTRVALLTGYNHHSNNAGSIMETATAFPGNNGVRP
                     QSITPMAEVLRQNGFSTAAYGKYHETPPWEISKAGPYDRWPTHSGFENFYGFIGGETN
                     QYAPLIYDGTAQVEIPEDPNYHFTTDMTNHAISWMKFQKALSPDKPFFMYYAPGATHA
                     PHHVPPVWRDKYKGKFDQGWDKLREETLERQKKLGIVPADTKLAPKPKDIKDWDALSA
                     DEKKLFARQMETYAGFAEHTDNEIGRLYQAVEDTGQADNTLFIYIVGDNGASAEGQMN
                     GCFNEMSFFNGVPEGVPEMLKHYDEWGGPSTYPHFAAGWAVAMDTPFSYTKQVASDFG
                     GTRNGMVIHRPKRIKANGEMRSQ"
BASE COUNT          599 a          583 c          592 g          492 t
ORIGIN      
        1 acagcacctc cgccgccagc cggcgatgat tccgatccca caaggccggt cgtttggagt
       61 ttgcgagagg agtactacaa ccttcaggga caagcttgga acaacgcgtt tttttttcgg
      121 gtagaccggg cggtttttaa agagcgtcgc cgcccacttg ggaaaagtgg agttcttacg
      181 cggcttgata tccctttcgt cgtaacgcac cgcgcagatg gaactagtgc aggtttagga
      241 gacatctacg cgcaagcatt cgtactgcct taccgtcagg gaaaactcgt ttgggctgca
      301 ggttctgggg tcttcatacc aaccgctaca agccggaggc tgggaacagg gaagctaacg
      361 attgctccgg taatcgcccc cgtccggttt attccgaagc gcggattctt tttagtcaag
      421 gtgcaggact ttttctcggt tgcgggcgcg aacgaccgac ccgatcttca ctacatgacg
      481 atcacgccgt tgctggtgtg gcgcttgaag aacaaaccgt actgggtgca agtcgactcg
      541 gaaactcaga ctttttggaa ccgagataat cacaccagtt acaaggccgg tttcttattg
      601 ggtcggataa caaagcggcg tggtgtttgg atcaaactgg aagtaggaat gggcccatac
      661 cgcagtcaga gcctggcgat caagacaagt atctttagag tgcgatgaaa atccgcacac
      721 cgcgcatctg tcaaaactga caggtacctc ctcaatcact tttgggcaca atcaccgggc
      781 tcagccaccg gactgttgtt ccgcaaccca atagaaaaga gaccaaggcc ctctaaggag
      841 acgctatgtc gccaaaactc agaaccgtga ttcaattagt cctgtttggt gcgataaccc
      901 tgtttgtctt cagttgtgct aaagaagcaa ctgaaacttc cacctcaact tcttctgacg
      961 gactagaccg aactaacctt ccaatcaaag aaccagcccg acagacatac aaagaactcg
     1021 atgcgcgtaa cgccaaggcc ccagcgcgtt gggaggtaaa agcgccgcag ggggctccaa
     1081 acgtagttgt ggtcctgatc gacgacatcg gattcggagc ctccagcaca tttggtgggc
     1141 cgatcaacat gccgaacctg gaaaagattg ctgcgacggg tctcaaatac aatcgctttc
     1201 atacgacatc gttatgttca ccgacgcgcg tcgcattgct gactggttac aaccatcaca
     1261 gtaacaacgc tggatcgatc atggaaaccg cgactgcgtt tcccggcaac aatggggtga
     1321 gaccacaatc gataacgccg atggccgaag tcctgagaca gaacggtttc agcacggcag
     1381 catacggtaa gtaccatgaa acaccgccct gggaaatatc gaaggctgga ccatatgatc
     1441 gttggcccac acactcaggt tttgaaaatt tctacggatt tataggtgga gaaacaaatc
     1501 aatacgcacc attgatctac gacggcaccg cgcaggttga aattcctgaa gatcccaact
     1561 atcacttcac gactgacatg actaaccatg caatttcgtg gatgaagttt caaaaggcat
     1621 taagtcctga caaaccgttc tttatgtact acgcgcccgg tgctacgcac gctccgcatc
     1681 acgtacctcc ggtttggcgc gacaagtaca aaggtaagtt cgatcaaggt tgggacaagc
     1741 ttcgggagga aacccttgaa cgtcaaaaga aactaggaat tgttccggca gataccaagc
     1801 ttgcgccaaa accaaaagac attaaagact gggacgcgct ctcggctgac gagaagaagt
     1861 tgttcgctcg tcaaatggaa acctatgcgg gttttgccga gcacaccgac aacgaaattg
     1921 gccggctcta tcaggcggtt gaagacacgg gtcaggctga caataccttg ttcatctaca
     1981 tcgttggcga caatggcgcc agcgctgagg gtcagatgaa tggatgtttc aatgaaatgt
     2041 cgtttttcaa tggcgtcccg gaaggtgtac cggaaatgtt gaaacactat gacgaatggg
     2101 gtggcccgag cacatatcca cacttcgcag ccggatgggc cgtggcgatg gatacgccgt
     2161 tctcgtacac caagcaggtt gcgtcagact ttgggggcac acgtaacggt atggtcattc
     2221 accggccgaa aagaataaag gccaacggtg agatgcgttc gcagtt
//
LOCUS       DATCGC010001504         1139 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_55562, whole genome shotgun sequence.
ACCESSION   DATCGC010001504 DATCGC010000000
VERSION     DATCGC010001504.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1139)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1139)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1139
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55562"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..240
                     /locus_tag="VIJ87_14435"
     CDS             <1..240
                     /locus_tag="VIJ87_14435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445633.1"
                     /translation="TGDTDFWSDPKGEFLAAVAAGPVYRLLGQQGLDTDQMPAAGQPI
                     MHTLGYYMHAGGHGTIPSDWDQFIKFLQLNLRPGT"
     gene            636..>1139
                     /locus_tag="VIJ87_14440"
     CDS             636..>1139
                     /locus_tag="VIJ87_14440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445634.1"
                     /translation="MKKLRIALLTLVVLSVLALPFIVWAATLVNDTYADGNSQNQDLA
                     NNSIRLFQGRSTTVRTDAIGSVTFDLTTTTSAEAFWGFFTNSGSPVNLKVGDKLSVSG
                     TFVLTGFTAGGQDIRFGVLNSLGTRNANNLTGGMNDASFANDPGYALDFFPSGTGSPF
                     AILRRTLL"
BASE COUNT          256 a          309 c          288 g          286 t
ORIGIN      
        1 actggcgaca ctgatttttg gtctgatcca aagggcgaat tccttgctgc ggtcgccgca
       61 ggacccgttt atcgactatt gggccagcag ggactggaca ccgatcaaat gccggccgcc
      121 ggacagccaa tcatgcatac gctcggctac tacatgcacg ctggaggaca tgggaccatc
      181 ccgtctgact gggaccagtt cataaagttc ctacaactaa atctgcgccc gggcacatag
      241 acagggaagg ggacaaatta cgtattggtc agtccactgc tggccaagga cttttgattc
      301 cttgacgtct tcctttgacc gttgtagagt gctggccgaa atctagatat ctcctaattt
      361 aataaagctc agtaaatttc gattgcgagt aacgtaagtc ctgatctaac tccgtctggt
      421 ccgtccttga ggaccacgtt gtcagatgcg gtttcagcgt ctctttccct aattggcttt
      481 acctttcatg agtcggttgc gcatctggta agggtgtttg ttaggggctg taaagctact
      541 tgagtctccc cggtcgaaat tgaattatca agatcagtca ggtttgttcc cctgacaaac
      601 aaatgcactc atcaaactgg aagggattca cagtaatgaa aaaattgaga atcgcgttgc
      661 tcacccttgt tgttctctct gtcctcgcac ttcctttcat cgtttgggcg gcaacacttg
      721 tcaatgacac ctacgccgac gggaacagtc agaaccagga tctggcgaac aattccattc
      781 gactcttcca agggcgaagc accaccgtgc gaaccgatgc gattggatcg gtcaccttcg
      841 atctgacgac cacgacgagc gcggaggcat tctggggctt ctttaccaac tcaggatcgc
      901 cggtcaatct caaggttggc gacaaactca gcgtgtcggg tacttttgtc cttaccgggt
      961 ttacggccgg cggccaggac atcaggttcg gggtcttgaa ttcacttggg acacggaacg
     1021 cgaacaatct taccggcgga atgaacgacg cttccttcgc gaacgaccca ggttacgctt
     1081 tggacttttt ccccagcgga acgggttcgc cgttcgccat cctgcgccgc accctcctg
//
LOCUS       DATCGC010001505         2554 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_322749, whole genome shotgun sequence.
ACCESSION   DATCGC010001505 DATCGC010000000
VERSION     DATCGC010001505.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2554)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2554)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2554
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322749"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(277..462)
                     /locus_tag="VIJ87_14445"
     CDS             complement(277..462)
                     /locus_tag="VIJ87_14445"
                     /inference="COORDINATES: protein motif:HMM:NF044773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445635.1"
                     /translation="MPTGTCPECDADVHVDLDTDKGEIVSCEECGTELEIVGLDPVEL
                     DIVEEESLDDDDDEDEY"
     gene            850..>2554
                     /locus_tag="VIJ87_14450"
     CDS             850..>2554
                     /locus_tag="VIJ87_14450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445636.1"
                     /translation="MKVLNSFLLVFAFALTPVLTTESLAQQRRQPAKPVRKVGTVQNV
                     PTFDTLIAADTYKIYVEVRGVGQLVRSNSVNELIDPVIKLADPPKEFKTLVKWLNTRA
                     DDVMTSRMLVATWATAKNVPEALVAIEFDSPEEAMKFEPQLNRFLPKVLPTPTPQASP
                     SPAETTTSAKPEDVATKPQYFLKQVGSLILITPSALNLKDLRPPKSRALSEEPSFRVA
                     RNRFASEQFFVYVDVNGMEKEEEDRRKQDQVEEAKRSEEAAKPAAENSVAPDSSTTEE
                     KKPNEEEQQTETALTAVTTQDQTSTQQTGPDPMTMAVGMLANSFFGGVAKWPSAIGFG
                     VSFEGESFDVRALMINAPGEKCDVIPIFPNLIPGAPLNPTSPSILPADTELFATLSLD
                     LPEIYAAISKPHPGGQENSGMQTISDTAFAGPFAEIEKHLKIKIKDDVLPLLGSEIVV
                     SMPVNFLEDSRPPKPIPEASPSTSNGTEPKPATGPSFVIALSLKDKEGMRALLPKIVD
                     SLGFKGASALAQIERRENIELVSYANTFSYAFIENFLILSADSVTTRHVVDSYLKHET
                     LS"
BASE COUNT          700 a          678 c          607 g          569 t
ORIGIN      
        1 actgttcaag gccctcgcag aagaagttac ttccgcatac gtcatggcgt tttatccacc
       61 ggagaacaag cgccgcgacg gaaagatcca ttcgatcaga gttgaagggc cgcatggtct
      121 aactctgcgc cagagtcgag tggaatacaa agcaccgggc gggcagtaat ggcgggcaag
      181 tagcgttaca gaataagaaa aacggcaaaa gcagttgagg cctcagagga aaccagttaa
      241 ttgcctgccg ttttctagtt tttggttatg gctgctttag tactcgtctt cgtcatcgtc
      301 gtcgtccaaa ctctcctctt cgactatatc cagttccact ggatcgagac cgacgatctc
      361 gagttcagtt ccgcattctt cgcaagacac aatttcgccc ttgtcagtat ccaaatcaac
      421 atggacatca gcatcacatt cagggcaggt tccggtcggc actgtttctt cctccacgct
      481 tcttgataaa ggcagtggtg cacctcgaat ccggaggaga gcccctacct tgaaatgaca
      541 gtcaaaacaa tctaaccgtc gtgagaggaa tttgcaatac tctttttgtg gagagtctgt
      601 gccatcaaaa cacgtcaaac ttcccggtca aatcactggt gaacaaaacg gaccaaacta
      661 cttgtcagcg gcttacgtat tgctacactg gacgcaaggt tgtccgacct aaagatgacc
      721 tgacttgtga aatcaatgtt aatgaacacg gctgctcgcc ctcctcaaat agaatgggac
      781 catgcagcgc agaattgatc agtcagttgg agtgaagtcg aaccgcaaca gttcggagtg
      841 gtgaagaata tgaaagtcct caactctttc ctgcttgtat tcgcttttgc cttgaccccg
      901 gtactaacta ccgaaagtct tgcacaacag agacgacaac cagccaagcc agtccgcaaa
      961 gtcggtacgg tacagaacgt tcctacgttc gatactctga ttgccgctga cacttacaag
     1021 atctacgtgg aagtgcgcgg tgtcggtcag ttggttcgat ctaactctgt aaatgaattg
     1081 attgacccgg tgataaaact ggcggatccg ccaaaagaat tcaagacgct tgttaaatgg
     1141 ctaaatacac gcgcggacga cgtgatgacg tcaagaatgc tggtcgcgac ctgggccaca
     1201 gctaaaaatg ttccggaagc actcgtcgca attgaattcg actcacccga ggaggctatg
     1261 aagtttgagc ctcaactgaa caggttcctc ccaaaagtac tgccaacacc aactccacag
     1321 gcttcgccat caccagccga aacgacaact agtgcgaaac cagaagacgt agcgaccaag
     1381 ccacaatact ttctgaaaca ggtcggttca ctcatcctga ttactcccag tgccctgaac
     1441 ctgaaggatc tacgtccccc gaagagcaga gcgctgtcag aagaacccag ttttcgcgtc
     1501 gcccgcaatc gttttgcttc ggaacagttc tttgtctatg tcgacgttaa cgggatggaa
     1561 aaagaggaag aagatcgacg aaagcaggat caggtagaag aagctaaacg atcagaagaa
     1621 gcggctaaac cggccgcgga aaactccgta gcaccggact catcaacgac tgaggagaaa
     1681 aaaccaaacg aagaagaaca acaaactgaa actgccctta cggcagttac aactcaggat
     1741 caaacctcaa ctcaacaaac cgggccagac ccgatgacga tggcggttgg tatgctcgca
     1801 aactcctttt ttgggggagt ggcgaagtgg ccaagcgcta tcgggtttgg agtgtccttt
     1861 gaaggtgaat ccttcgacgt tcgagcttta atgatcaacg cgccaggcga gaaatgcgac
     1921 gttattccca tcttccctaa tctaattcct ggcgctcctc tgaaccccac ttcaccctca
     1981 attcttcctg ctgataccga actgtttgcg actctatctt tggatctccc cgagatctac
     2041 gctgcgatat ccaaaccgca cccaggcggg caagagaatt ctgggatgca aacgatcagc
     2101 gataccgcgt ttgcggggcc cttcgccgaa atcgaaaagc atctaaagat caaaattaag
     2161 gacgacgtat tgccgctact gggctcagag attgttgtga gtatgcccgt gaactttttg
     2221 gaggacagcc ggcctccgaa acccatccct gaggcgagcc cctcgactag caacgggaca
     2281 gaaccaaagc cagctaccgg cccgagtttt gtcattgcac tctccttgaa agacaaggaa
     2341 ggcatgcgcg cactcttgcc taagattgtc gattcacttg ggttcaaagg ggcaagcgcc
     2401 ctggcccaaa tcgaacgccg cgaaaacata gaactagtct cctacgccaa cacgttttcg
     2461 tacgcgttta tcgaaaactt tctgatcctg tccgcggact ctgtaaccac tcggcacgta
     2521 gtagattcgt atctgaagca tgagacctta tcat
//
LOCUS       DATCGC010001506         1340 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_189665, whole genome shotgun sequence.
ACCESSION   DATCGC010001506 DATCGC010000000
VERSION     DATCGC010001506.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1340)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1340)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1340
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_189665"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..232)
                     /locus_tag="VIJ87_14455"
     CDS             complement(<1..232)
                     /locus_tag="VIJ87_14455"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HEY5445637.1"
                     /translation="MKRLIIVTVFATILFVGVPSSFASPLTFYTTLSGPNEEPPNGSP
                     ATGYALVTIDSVLHTMRVQVTFQDLLGPNIAAH"
     gene            504..1238
                     /locus_tag="VIJ87_14460"
     CDS             504..1238
                     /locus_tag="VIJ87_14460"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HEY5445638.1"
                     /translation="MERRTTSWFSPNLSTQMPLVAYGHAGPPLLMFPTAAADYLEYER
                     FYLVDSIKPLIEAGQLRAYSINSVNRYSLLNEQMPAPMKAELLTRYDKYITDEVLPLI
                     RKDCGDGENRPITTGASLGAFLAANEYFKHPDLFRGVIAMSGSYDVRSYLKGHYDDNV
                     YFNNPVDYLSNLNDDYYLPILQKADKILIMSGQGNYEAPDRSQTLSDILNAKGIPNTL
                     DLWGQDVDHDWPWWRKMLPYALGKLL"
BASE COUNT          352 a          307 c          335 g          346 t
ORIGIN      
        1 tatgcgcagc gatattgggc cctaagagat cctgaaaggt aacttggact cgcattgtgt
       61 gaaggacgga gtctatcgtt accagtgcgt aacccgtggc cggtgaaccg ttcggcggtt
      121 cctcatttgg accactcagg gtagtgtaga aagtgagtgg tgatgcaaag gaactgggca
      181 ctccgacaaa gagaatggtc gcaaagaccg tgacgatgat taatcttttc acttggcctc
      241 cagggagatg gatttttgtt agttctgaag agtctgattt ggaaaggcag ttacgtgcag
      301 caaacttgat gccgcctgtt catggaccaa tcatactgag aatgctcaac aaaagtgctg
      361 tacagcattc aagctgaaca aaaatgtctt tgattcagac attgtttcta gaatcaggaa
      421 tggtccatca atagtctgct tgccaccatc aaccactttg agagaatatc tcgcatccaa
      481 attcacaatt gagggaagtt tcaatggaac gtcgcactac atcctggttt agtcccaact
      541 taagtacaca aatgccgctc gtggcttacg gtcatgccgg gccaccgctc ttaatgtttc
      601 caaccgcggc agctgactat ctcgaatacg aacgctttta tctggttgat tctattaagc
      661 cgcttatcga agccggccag ttgcgggctt actcaattaa cagtgtgaat cgttatagct
      721 tgctcaacga gcagatgcct gctccgatga aagccgagct cttgacgcgt tacgacaaat
      781 acatcacaga tgaagtgttg ccgttgattc gcaaggattg cggcgacggt gagaatcgtc
      841 caataacaac gggcgcgagc ctgggtgcat ttctagcggc aaatgaatat ttcaaacatc
      901 ccgatctatt tcgtggtgtg attgcaatga gtggtagtta cgacgtgcgt tcctatttga
      961 aggggcatta cgacgacaat gtctacttca acaatccagt cgactatctc tcaaatctca
     1021 acgacgatta ttaccttccc attctgcaga aggctgacaa gatcctgatt atgtcggggc
     1081 agggaaacta cgaagctcct gatcgaagtc aaaccttgtc ggacattctc aacgctaaag
     1141 ggattccgaa cacgttggac ctctggggcc aggacgtcga tcacgattgg ccgtggtgga
     1201 ggaagatgct tccttatgcg ttagggaagc ttttgtagcg cggactaaaa gatcaccggt
     1261 catatatcat cggcattttc cagatggtcg tttttgccca ccagtggtaa cgaggtcagt
     1321 accaaaacgc ggtagcgtat
//
LOCUS       DATCGC010001507         1416 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_322755, whole genome shotgun sequence.
ACCESSION   DATCGC010001507 DATCGC010000000
VERSION     DATCGC010001507.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1416)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1416)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1416
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322755"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            76..1140
                     /locus_tag="VIJ87_14465"
     CDS             76..1140
                     /locus_tag="VIJ87_14465"
                     /inference="COORDINATES: protein motif:HMM:NF024110.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5445639.1"
                     /translation="MIRQVNNQSLHPLFELTLTRVREFLREKEAVFWVFIFPVLMTFA
                     LGIAFRNTAPDKTFVAVEGDATNSSVSAVAAVLAHAPEISSSVLPPDEAAMALRSGKV
                     AIVIKPANDSYSLRFDPTRPESRTAKLIVDDVLQRAKGRQDVAQIGEEKIIEPGARYV
                     DFLVPGLIGMNLMGSGLWGLGFTIVIARSRKILKRFAATPMRRSHYLLSFMLSRLVFL
                     FLEVAAVVLFAWLAFGFTVRGSWLTVSLIILLGGFTFSGIGLLVAARPTTIEGVSGLM
                     NFIMLPMWLLSGTFFSSERFPNVLQPFIKALPLTALNTLLRSVMNEGAPLWTNWMHVA
                     ILLGWLLISFVIALKIFRWQ"
BASE COUNT          318 a          339 c          356 g          403 t
ORIGIN      
        1 gccgcaggag gcacgtttgt gtcgcaatca attgatagat gagaaatgtc aaattatttc
       61 aaattataat gaccaatgat tcgtcaagtg aataaccagt cccttcatcc tctatttgag
      121 ttgactttga cgcgcgtgcg cgagtttctg cgtgagaagg aagctgtgtt ctgggtcttc
      181 atctttccgg tgttgatgac cttcgcgctc ggtatcgctt ttcgcaacac cgcacccgac
      241 aaaacatttg tagctgttga gggcgacgcg acaaactcga gtgtaagtgc agtcgccgct
      301 gttctcgcgc acgctcctga aatcagctca tctgtcttac ctcccgacga ggctgcgatg
      361 gcgctacgaa gtgggaaggt agcgatagtc atcaaacccg ctaacgattc ttactcctta
      421 cgttttgatc cgaccaggcc agagagccgc actgccaaac tcatagtcga cgacgttttg
      481 cagcgcgcaa aaggaagaca ggatgtcgct cagataggag aagaaaaaat tattgagccc
      541 ggcgcgcgct atgtcgactt tcttgttccg gggttgattg gcatgaacct gatgggcagc
      601 ggcttgtggg gactgggatt tactattgtg atcgcacgct cacgcaaaat acttaagcgt
      661 tttgccgcaa caccgatgcg acgttcgcat tatctactgt cgttcatgct ttcgcgttta
      721 gtgttcttgt ttcttgaagt ggcggctgtt gttctcttcg cgtggctcgc ctttggtttc
      781 accgtgcgag gttcatggct caccgtttcc ctcatcatat tgctcggagg tttcacattt
      841 tccggaattg gattgctggt ggctgctcga ccaacgacga ttgaaggtgt ttcggggttg
      901 atgaacttta ttatgcttcc gatgtggtta ctgtcgggga cattcttttc gtccgagaga
      961 tttccaaacg tacttcaacc cttcatcaag gcattaccat taaccgcact caacacgctc
     1021 ttgcgaagcg tgatgaacga aggagcaccg ctctggacta actggatgca cgtcgcgatc
     1081 ttgttgggat ggctgctaat cagcttcgtg attgcgctta agatttttag atggcagtag
     1141 tggcgtcaag gatttgtcgg acggaatggg cagaagagtg cttagtttgt gagtcctcaa
     1201 ctaggatttt tagaagcctt cctcaattaa ttcttccgat ctaaatttat tgcaagaatc
     1261 cttgcaactt ttttgagctg tggtagactc ccgcccgaag taaatcagct cctatcgttt
     1321 cctagcccac tcacacctcg cagaaggctt cagggaggac cttacatgtc aatatttaag
     1381 atccagatca cagcgggcaa gcctgcagtg ttcaat
//
LOCUS       DATCGC010001508         1664 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_121178, whole genome shotgun sequence.
ACCESSION   DATCGC010001508 DATCGC010000000
VERSION     DATCGC010001508.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1664)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1664)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1664
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121178"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..447
                     /locus_tag="VIJ87_14470"
     CDS             <1..447
                     /locus_tag="VIJ87_14470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445640.1"
                     /translation="SVRLWNSRFVPALDYWLEQGRLTSEQVSHLKSLPLYQQIAEVLE
                     LEKTGIYFSKDLSKSILYSIAAPGTSQHIHMLAFDVNEFENPRVREIMAKHGWFQTVL
                     SDLPHFTFLGLKEKDLPKNGLRNVELNGQVFWIPNVEGSLHPGLDK"
     gene            697..>1664
                     /locus_tag="VIJ87_14475"
     CDS             697..>1664
                     /locus_tag="VIJ87_14475"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF019334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY5445641.1"
                     /translation="MDVPQFIAGRFRIEREIGIGGMGTVYLATHLGLERPVAVKIIRR
                     EFAGDQDVADRFLREARTMAKLRHPHAAMIFDAGNLPDGRHFIIMEFVEGETLSQALA
                     REGRFSASRSVQIATQVCDVLEEAHRLGIIHRDLKPSNIMLSERGVCVLDFGVAKVLA
                     SSAEATATHASTGSGQIVGTPRYMSPEQCLGQRVGARSDLYSLGVLLYEMLAGRPPFV
                     DPLPSALLVKQATAPAPPLPRLVEDIPRPLALAVHSLLAKRPEDRPRTAASAKTILER
                     SLLKPERTLPDIEPLSSMVAATSPARNIVFRVGAPLILVTMFGALLA"
BASE COUNT          378 a          455 c          432 g          399 t
ORIGIN      
        1 agcgtccgac tttggaattc ccgattcgtc ccggcactgg attactggct ggaacaggga
       61 cgcctcacga gcgagcaagt aagtcacctc aagagtcttc ctctctacca acagatcgct
      121 gaagtcttgg aacttgaaaa aacagggatc tacttcagca aggatttgtc gaagtcgatc
      181 ctttactcca tcgctgcgcc gggtacttcc caacacattc atatgctggc cttcgatgta
      241 aacgagtttg agaatccacg agtccgcgag atcatggcga agcacggttg gtttcaaacg
      301 gtattgagcg atttgcccca tttcacgttt ttgggcctaa aagagaaaga cttaccaaag
      361 aacggattgc gcaatgttga actaaacggg caagtgtttt ggattcccaa cgttgaaggt
      421 tcgctccatc cgggattgga taaatagacc acggtaggaa gaatttgggt gaggggcgac
      481 cgggaacgtc gcccgaaatt tgttagtcaa gcaaggcaat gttggcaatt tcaatctagc
      541 acttccccca tttccagtgc taagataccg ccgccggatt cgttcggcct ccccccaaaa
      601 cattaaaagc ccaatagatg ttaccgctcg ggcgaacgct tctcctgatc agtttgcgca
      661 ccgcaccggc acctcttacc cgaaagaagg tccgttatgg atgtccccca gtttatcgcc
      721 ggaagattcc gaatcgaacg tgagatcgga atcggcggaa tgggaacggt ttatcttgcc
      781 acccacctcg ggcttgaacg cccggttgct gtaaaaatca tcagacgtga gttcgctggt
      841 gatcaggacg ttgctgatcg gtttcttcgt gaagcgcgaa cgatggctaa acttcgccat
      901 ccgcatgcag caatgatctt cgacgccgga aaccttcccg acggacgcca cttcattatt
      961 atggagtttg tcgaaggcga aacactttcg caggccctgg cccgcgaggg tcgtttctcg
     1021 gcttcccgct ctgtccaaat tgcaacgcag gtttgcgatg tcctcgagga agcacatcga
     1081 ctgggcatca ttcatcgtga tctgaaacct tcaaacatca tgctcagcga acgaggcgtt
     1141 tgtgtactcg acttcggagt tgcaaaagtt ctcgcctcgt cggctgaagc gactgcgaca
     1201 cacgcgagca caggttcagg tcagattgtt ggaacaccac gatacatgtc gcctgagcag
     1261 tgtcttggtc agcgtgtggg ggcccgaagt gatctttata gcctcggcgt cttgctttat
     1321 gaaatgcttg ctggtcgacc gccgtttgtc gatccgttac cctcggcact gttggtgaag
     1381 caggcaaccg caccagcgcc tccgctccca aggctagtcg aagacattcc acgtccgctc
     1441 gccctcgccg ttcattcact cttggcgaag cggccggaag atcgacctcg aaccgcagcg
     1501 tctgcgaaga caatactcga gcgcagcttg ctgaaacctg aacgaacttt gcctgatatt
     1561 gaaccgttgt cgtcgatggt tgccgcaacg agtccggctc gcaacattgt atttcgcgtt
     1621 ggtgccccat tgattctcgt gaccatgttt ggcgcactgt tggc
//
LOCUS       DATCGC010001509         1094 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_355152, whole genome shotgun sequence.
ACCESSION   DATCGC010001509 DATCGC010000000
VERSION     DATCGC010001509.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1094)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1094)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1094
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_355152"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1094)
                     /locus_tag="VIJ87_14480"
     CDS             complement(<1..>1094)
                     /locus_tag="VIJ87_14480"
                     /inference="COORDINATES: protein motif:HMM:NF014269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LON peptidase substrate-binding
                     domain-containing protein"
                     /protein_id="HEY5445642.1"
                     /translation="SDITPADVAWYPMVPIRDVVIFPFTKVAFKIGRSGSVRALEQAL
                     ATDRTIFLATQHDATVDEPSPNQIYGVGTLGKILQSQKQDNGQIKVVVEGRERATTVR
                     VENTDGAFMALVRRAPVVNEEGTRLDALIQKVGQLVEQHLRLAPDTQTDALQTALRNQ
                     EPSHLADALASQLKISVEDKQGLLEIFSTQARLQRLVELLETEIEKRQLDRTIQTRVK
                     RQMEKAQKEYYLNEQIKAIHKELGRKDEKAELEELKKKIEEAGMTDEAKEKAMQELHR
                     LEAMPPMSAEGTVSRTYIDWLLSVPWKQKSKEIKDLTKAEEVLNEDHFGLDKIKERIL
                     EYLAVRQLVKNPRGSILCFVGPPGVGKTSL"
BASE COUNT          215 a          276 c          289 g          314 t
ORIGIN      
        1 cagactcgtc ttgccaactc ccggcggccc cacgaagcag agaatcgagc cgcgtggatt
       61 tttgacgagc tgtcgaaccg ctaaatactc gagaattctt tccttgatct tgtccagtcc
      121 gaagtggtct tcgttgagca cttcttcggc ttttgtcaga tccttgatct cttttgactt
      181 ttgtttccaa ggtacactga gcaaccaatc aatgtaggtt cgggaaaccg tgccttcggc
      241 agacattggc ggcatagctt caaggcggtg cagctcctgc atcgcttttt cctttgcctc
      301 gtctgtcatg cctgcttctt cgatcttctt cttcagctct tcaagctcgg ccttctcgtc
      361 tttacgacca agctctttgt gaatcgcctt gatttgctca ttgaggtagt actccttctg
      421 agctttttcc atttggcgct ttacgcgagt ctgaatcgtg cggtcgagtt gccgtttctc
      481 gatttcagtt tcgagcagct caaccagtcg ctgcagtcgg gcttgagtcg aaaagatttc
      541 gagcaaaccc tgcttgtcct cgacggaaat cttgagttga gacgcgagcg catccgctag
      601 atgcgatggc tcttgatttc gcagagcggt ttggagggcg tctgtctgag tgtcgggagc
      661 aagacggaga tgttgttcga cgagttgtcc tactttttga atcagggcgt cgaggcgagt
      721 tccttcttcg ttcacgacag gagcacgtcg aacgagcgcc ataaaagcgc cgtcggtgtt
      781 ttccacgcgc acagttgtcg cgcgttcacg tccttcgact acaaccttaa tttgaccgtt
      841 atcttgcttt tgcgactgaa gaatcttgcc gagagttccc actccgtaga tttgattggg
      901 ggaaggctca tcgacggtgg cgtcgtgctg agtggctaag aatatagtgc gatcggtggc
      961 gagggcctgt tcaagggcgc gcactgaacc tgaccgacct attttgaaag caacttttgt
     1021 aaaaggaaag attacgacat cgcggattgg caccattgga taccaggcga catctgcggg
     1081 ggttatatct gaat
//
LOCUS       DATCGC010001510         1303 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_24795, whole genome shotgun sequence.
ACCESSION   DATCGC010001510 DATCGC010000000
VERSION     DATCGC010001510.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1303)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1303)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1303
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24795"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(43..807)
                     /locus_tag="VIJ87_14485"
     CDS             complement(43..807)
                     /locus_tag="VIJ87_14485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445643.1"
                     /translation="MSSYHLIRAIVLALVLTPTALMAQTPTPTPTPTPTPVPTWWQNL
                     LRVTGISATPAKQRGSAESIESGRIWIADLQLKTRTRLTSESGYRSPIFVDKDKNILM
                     LRNDEVFRVPVSGGPVKMLYQIKGAIKLVGQSLDDTDKVLMLTQDGNKKTSITLLSLS
                     SGKLTVVPYETTSPEGKSMFDHFAGWNRTYGTTEVSVAEKVKKDESGRILTKWTDVFL
                     KRMDQEPINVSNCNGINCGQPSLSQNGQLLAFVKAS"
     gene            complement(824..>1303)
                     /locus_tag="VIJ87_14490"
     CDS             complement(824..>1303)
                     /locus_tag="VIJ87_14490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445644.1"
                     /translation="MDGKENYYFYSHNHDPKVDPENMDISWRVIMERFTKAPGKAVIF
                     IDTCHAGAFKGNSFASLYQSHTGDFVETTLFLASDANGYSQEKTEWRHGAFTFAVLEG
                     LKGAADWPQEKDGRIDLEELGIYVRKRVEKLEPTQHPAYALSIVQGSTILFSYPPPK"
BASE COUNT          303 a          345 c          322 g          333 t
ORIGIN      
        1 cttgacagtc gagctactgc cccggaacca cccggtgcat cgctacgagg ccttaacaaa
       61 ggcgagaagc tgaccattct gcgagagcga tggctggccg cagtttattc cgttacagtt
      121 gctaacgttg atcggttcct gatccatacg cttgagaaac acatcagtcc atttcgtgag
      181 aatacgtcct gactcatctt tctttacctt ctccgctaca gaaacctcgg tagtcccgta
      241 ggtgcggttc catccagcaa aatgatcaaa catgctcttg ccttccggag aggtcgtttc
      301 gtaaggaact actgtcaact tgccgctgct caatgagagt agggtgatac tagttttttt
      361 gtttccgtcc tgcgtcagca tgagcacttt atcggtgtca tccaaactct ggccgacaag
      421 tttgatggcg cctttgatct ggtagagcat ctttactggt ccacccgaaa cgggcacgcg
      481 aaagacctcg tcattcctga gcatgagaat gtttttgtcc ttgtccacaa agatcggcga
      541 acgatatccg ctctcactag tcaacctcgt acgagtcttt agctgcaagt cggctatcca
      601 aatgcgacct gactcaatgg actcagccga cccccgctgc ttagctggag tcgcagagat
      661 gccggtgacc cgcagaaggt tctgccacca cgtcggcacc ggcgtcggtg ttggcgttgg
      721 cgttggcgtc ggagtctggg ccatgagtgc cgttggcgta aggaccagtg cgagaacgat
      781 cgcgcggata aggtgataag agctcaaatt gaggtacctc acatcacttt ggtggtggat
      841 aagagaacaa aattgtcgaa ccctgaacaa tcgaaagggc gtaagcggga tgctgtgtag
      901 gctccaactt ttcgactcgc tttctgacgt agatccccag ctcttcaagg tcgattctcc
      961 catctttttc ttgaggccag tctgcggctc ctttaagacc ttcgagaaca gcaaacgtaa
     1021 acgctccgtg acgccactca gttttctctt gtgagtaccc attcgcatca gaggccagga
     1081 aaagtgttgt ctccacgaag tccccagtat gcgactgata cagactagcg aagctattgc
     1141 ctttaaaagc gccggcgtga caagtgtcga tgaaaataac agctttgcct ggagctttcg
     1201 tgaaccgctc cattattaca cgccaactaa tatccatgtt ttcgggatca accttcgggt
     1261 catggttatg cgaatagaag tagtagttct ccttaccatc cat
//
LOCUS       DATCGC010001511         1174 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_287344, whole genome shotgun sequence.
ACCESSION   DATCGC010001511 DATCGC010000000
VERSION     DATCGC010001511.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1174)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1174)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1174
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287344"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..193
                     /locus_tag="VIJ87_14495"
     CDS             <1..193
                     /locus_tag="VIJ87_14495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445645.1"
                     /translation="TRSAAESFPNPSQRELVDDSSPTCRPPLFESDALRGERTLMLEN
                     SLELRAKRQAFEIALLGWT"
     gene            complement(311..>1174)
                     /locus_tag="VIJ87_14500"
     CDS             complement(311..>1174)
                     /locus_tag="VIJ87_14500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445646.1"
                     /translation="RERKWFMLYTNRRANLQNSTGVEWVHGTRIGIAESTDDGATWKY
                     KGVADIGFGPADYTHWAPDVVYHAGTYHMYLTIVPGIFKDWNATRDIVHLTSKDLLKW
                     KYESTLKLASDRVIDASVMRLPNGSWRMWYNNERDKKSIYYADSPDLYKWQDQGKALG
                     ERGEGPKVFRWKNRYWMVIDIWRGLAIYSSDDLVKWTRQPETILQKAGTGVDDQVIGG
                     HPDVQVSSERAFLFYFTHPGRQGPQAKDDGYEQRRSSIQVVELEYKDGVISCDRDQPT
                     RIRLQPPSGKD"
BASE COUNT          227 a          324 c          320 g          303 t
ORIGIN      
        1 gacaaggagc gccgctgaga gctttccgaa tcccagccaa cgggagttgg tggatgattc
       61 aagtcctacc tgcagaccac cactcttcga atctgatgct ttgcgcggag aacgaaccct
      121 gatgctggaa aactcgctgg aactccgcgc gaagcgtcag gcttttgaga ttgctttgct
      181 aggctggacc tgaacaggga ttcggaaagt tttcaacggc cttccttgta ggttgggctt
      241 gaacaatccc cgcactgccg tgccggggat tctcgacttt taatgcgaag ccgatccgaa
      301 atagcaatcg ctagtctttt ccacttggtg gctgcagccg gatgcgggtc ggttgatctc
      361 tgtcacagct gatcactccg tctttatatt ctaactcgac aacctggatt gaacttcgac
      421 gctgctcgta gccgtcatct tttgcttgtg ggccttgccg gcccgggtgc gtgaagtaga
      481 aaaggaaggc gcgctcgctg cttacttgca cgtcggggtg gccgccaata acctgatcgt
      541 cgactcccgt gcctgccttc tgaagtatgg tctccggttg gcgtgtccat ttcactagat
      601 catccgaact gtaaatagca agacctctcc agatgtcgat aaccatccag tagcgattct
      661 tccaccgaaa gactttgggg ccttcgcctc gctcaccgag tgcctttccc tggtcctgcc
      721 atttgtaaag gtccgggcta tcagcatagt agatcgattt cttatcacgc tcgttgttgt
      781 accacatgcg ccagctgccg ttcggcaggc gcattaccga tgcgtctatg accctgtcgg
      841 acgcgagctt taatgtcgac tcgtatttcc acttgaggag gtctttgctt gtcaggtgga
      901 caatgtcgcg tgtcgcgttc cagtccttga agatgccggg tacgatcgtg aggtacatgt
      961 gataagtacc tgcgtgatag accacgtctg gtgcccagtg tgtgtagtcg gcaggaccga
     1021 agccgatatc agccacgcct ttgtacttcc aggttgcgcc atcgtctgtc gattccgcga
     1081 tgccgatgcg ggtaccgtga acccactcga ctcccgttga gttctggagg ttcgcgcgac
     1141 ggttcgtata gagcatgaac cacttgcgct cgcg
//
LOCUS       DATCGC010001512         1035 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_89167, whole genome shotgun sequence.
ACCESSION   DATCGC010001512 DATCGC010000000
VERSION     DATCGC010001512.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1035
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89167"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1035)
                     /locus_tag="VIJ87_14505"
     CDS             complement(<1..>1035)
                     /locus_tag="VIJ87_14505"
                     /inference="COORDINATES: protein motif:HMM:NF013957.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004866 - endopeptidase inhibitor activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MG2 domain-containing protein"
                     /protein_id="HEY5445647.1"
                     /translation="RLATSYFAREGSDYRARVQTVNPATNQAVPGVNVQGEVVLENDN
                     GDVHLKAFGNTDANGYAILSFRVPSPFPQFPHELRPAGGEIKVIARYGALVAETSGEV
                     LVDQFPRILITTDKPIYQPGQTLHVRALVLTPSRKVMANEQVTLKIYDNNEIVVFQST
                     LTSSRFGVISTEWPISTNTRLGRYSIRLSLSNEDDDWYATSLVMVTRYELPNFTVNVQ
                     PDRKYYLAGQNAKVQVRADYLFGRPVTRAHVRVVRESDRHWDSDEQKWVADEGETFEG
                     NTDANGNFTASIDLKEQHKQLSDSYDSDRFDDSNYAAYVTDLSTNRTEQRRFDLRVTR
                     EPIHVYLIQN"
BASE COUNT          231 a          270 c          271 g          263 t
ORIGIN      
        1 tattctgaat gaggtaaacg tggatgggtt ctcgcgtgac ccgcaagtcg aacctgcgtt
       61 gttcagtccg attggtggat agatcggtta cgtaagcagc gtagttactg tcgtcaaaac
      121 gatctgagtc gtaactgtcg gacaattgct tatgctgttc ttttaggtca attgatgcag
      181 taaagtttcc atttgcgtct gtgttgccct cgaaagtttc tccttcgtcc gccacccatt
      241 tttgttcgtc agagtcccaa tggcgatcac tctcacgaac gacgcgcacg tgagcacgcg
      301 tcaccggccg tccgaacaag tagtcagcgc ggacctgcac ctttgcgttc tgcccggcca
      361 ggtaatactt ccgatccggt tggacattca cggtgaaatt cggcaactcg taacgggtga
      421 ccattaccag cgacgtggca taccagtcgt catcctcgtt cgagagactg agacgtatcg
      481 aatatcgacc caacctcgta ttagtagaaa ttggccactc agtactaata actccgaagc
      541 gcgaactggt aagcgtgctc tggaagacga cgatttcgtt gttgtcatag atcttcagag
      601 tcacctgctc gttggccatt acctttcgag aaggagtcaa caccagcgct cgcacgtgta
      661 gcgtctgtcc gggttgatat attggtttgt cagtagtgat cagaatcctt ggaaactgat
      721 cgacgagcac ctcgccgctt gtttcagcca ctaaagcccc ataacgcgcg ataactttaa
      781 tttcaccccc agccgggcga agctcatgag gaaactgggg gaagggagaa gggacgcgga
      841 aacttagaat cgcgtaaccg tttgcgtcgg tgttgccgaa cgccttcaag tgaacatccc
      901 cgttgtcgtt ttcgagaaca acctcgccct gcacattgac gcctggtacc gcttgattgg
      961 ttgcggggtt gactgtttgc acacgcgctc gatagtcgct gccttcgcgc gcgaagtaag
     1021 aggttgcgag cctta
//
LOCUS       DATCGC010001513         1720 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_487906, whole genome shotgun sequence.
ACCESSION   DATCGC010001513 DATCGC010000000
VERSION     DATCGC010001513.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1720)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1720)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1720
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_487906"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..797)
                     /locus_tag="VIJ87_14510"
     CDS             complement(<1..797)
                     /locus_tag="VIJ87_14510"
                     /inference="COORDINATES: protein motif:HMM:NF039478.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6519 domain-containing protein"
                     /protein_id="HEY5445648.1"
                     /translation="MPNIDISRDATDLRKHYDRVQMQQGRVLTDDDFNEAERLDAEDA
                     RRVRVDVIGPAGSPDDGFRLKVIGGQLTLSAGTYYTGGLRLELESDEQFNLQKDWLQQ
                     GSSPGETLTPPAGSQFDFVWLDVWQQAVTAVEDKELLEAALGGADTSARIRTMRRAHV
                     LPNVGDVDCADAWTQLVTSLAGEGTLNSDYELVPDSRLTVEPDGTAGTDDLCTPPVNG
                     GYLGAENQAIRVQITGNNQFTWGFDNGAPLYRVKLVADNTGSLQRIH"
     gene            complement(809..>1720)
                     /locus_tag="VIJ87_14515"
     CDS             complement(809..>1720)
                     /locus_tag="VIJ87_14515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445649.1"
                     /translation="PTGTFLNPDVAQITDSANYTPIDNRNQIERLEFRAANRTRPYLR
                     LTHNWLLNTAAAGEAELTLDGLWIGADGAFSIRLLGDYKLVTLRHVTFDPGGVDASGN
                     PIRPVPLSIRGNVEKLVIENSIVGPILVEGAGELTNLEIRDSIVDGQESTAPVISVPA
                     GKVTMRSVTVFGEVEVEWLDASETLITGFTNVTNTQGGCFRFSAVAERQDPLNPLSPH
                     SRVPHPFESYFVKDFDGTFTSRVFGQPGFAQLSESAPAFLHRGAENGSEIGAFSSLLN
                     PIKLDSLRAKVDEFAPFGLLPVYVFET"
BASE COUNT          413 a          461 c          453 g          393 t
ORIGIN      
        1 atgtgaatgc gctgcaggct gccggtgttg tcagcaacca acttcacccg atacagcggc
       61 gcaccattat caaatcccca ggtgaattga ttgttgccgg tgatctgaac tcgaatcgcc
      121 tggttttcgg cgcccagata accaccattg actggcggag tgcacaagtc gtcagtacct
      181 gcagttccat caggttcaac cgttagtcgt gaatcgggaa caagttcgta atcactattg
      241 agtgttcctt cacctgccag cgaagtaaca agttgtgtcc aggcgtctgc acaatcaaca
      301 tcgccaacgt tcggcaacac atgagcacga cgcatcgtcc gaattcttgc cgaggtatct
      361 gctcctccca gcgcagcttc taacaactcc ttgtcttcaa ctgcagtgac cgcctgttgc
      421 caaacatcta accaaacaaa atcaaactga gaaccagctg gaggggtcaa cgtctcgcct
      481 ggacttgaac cttgttgcag ccaatccttc tgcaggttga attgttcgtc agactccaac
      541 tcgagacgca gaccacccgt gtagtaagtg ccggcactca aagtgagttg accaccaatc
      601 accttcaacc tgaagccatc gtcaggactt cccgctgggc caatgacatc gacgcgcaca
      661 cgacgagcgt cttcggcatc aaggcgctcg gcctcgttga agtcgtcatc agtgagcacg
      721 cgtccttgtt gcatctggac gcggtcgtag tgtttgcgga ggtcggtggc gtctcgtgag
      781 atatcgatgt taggcataag tcctcgaatc aggtttcaaa aacgtaaaca ggcaaaaggc
      841 caaagggtgc gaattcatcg acctttgccc gtaaactgtc gagcttgatt ggattcaaca
      901 aactgctgaa agctcctatt tccgatccat tctccgcacc tcgatgaaga aacgcgggcg
      961 cactctccga gagttgtgcg aagccgggtt gaccaaaaac tcgtgaagtg aaagtgccgt
     1021 cgaagtcctt gacgaagtaa gactcaaatg ggtgtggcac acgactgtga ggcgacagag
     1081 ggttgagcgg gtcttgccgt tcagcaacag cgctgaaacg gaagcatcca ccctgggtgt
     1141 ttgtaacgtt ggtgaaaccg gtgatgagtg tttctgatgc gtcgagccat tcaacttcaa
     1201 cttcgccgaa aacggtgaca ctccgcatcg tgactttgcc tgcgggaact gaaatcaccg
     1261 gagcagttga ttcctggcca tcgacgatgg agtcacgaat ttcgaggtta gttaactcgc
     1321 ccgcgccttc gacaagaatc ggaccgacaa tcgagttttc aatgaccaac ttttcaacgt
     1381 tgcctctgat gctgagtgga actggacgaa tcggatttcc cgaggcgtcg accccacccg
     1441 gatcgaatgt cacgtgacga agcgttacga gcttgtagtc gcccaggagt cgaatcgaga
     1501 aagcaccatc cgcgcctatc cacagtccat caagcgtgag ttcagcctcg cctgctgccg
     1561 cggtgttaag caaccagttg tgagtgagtc gaagatacgg acgagttctg ttggcagcgc
     1621 gaaactcgag gcgttcaatc tgattgcgat tatctatcgg cgtgtagttc gccgagtctg
     1681 tgatttgcgc gacatcggga ttaaggaacg tgccggttgg
//
LOCUS       DATCGC010001514         1310 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_419825, whole genome shotgun sequence.
ACCESSION   DATCGC010001514 DATCGC010000000
VERSION     DATCGC010001514.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1310)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1310)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1310
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_419825"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            210..1136
                     /locus_tag="VIJ87_14520"
     CDS             210..1136
                     /locus_tag="VIJ87_14520"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HEY5445650.1"
                     /translation="MAVRIGKPAPEFEGEAWTRGAHGPKKVGLSQHRGKWVILFFYPR
                     DFTFICPTEIASFGAIQKDFERENAVVIGVSTDSFYTHKAWFESDPRLANINYPVIAD
                     TGHQVSGAFDVLLEDGAALRGTFIIDPEGILRHMSVNELDVGRNVSETLRVLQALRTG
                     ELCPVGWKPGESTLTSYDEWLAKALPRLSKQVLVDATKKLQTTKYSAGQMVFEQGDAP
                     DRFYIISVGEVEVIRRKRDGSEKILAVLHPGDYFGEIGLLTEARRNASIRAKTDVELL
                     AMSWDDFRKVIESSEASRKDFADIMRERLAQT"
BASE COUNT          355 a          294 c          364 g          297 t
ORIGIN      
        1 gtcagcaacg aagattgttc gcctgttgga atcctccgct gagacgcagc ctgatgaagc
       61 cataaccatt ttcgagactt ttcaaatgat aggatttgga catactgtcg tcacaaagga
      121 ctttcgatag taacgggaaa acgaatcaat ccataagaga cgcttgatga gacatcaaca
      181 tctgaattca aacttgagag gaggaactaa tggcagttcg aatcggtaaa cctgcaccgg
      241 agttcgaagg ggaagcttgg acaagaggag cgcatggtcc aaagaaggtt gggctgtcac
      301 aacatcgcgg taagtgggta attctctttt tctatccacg cgattttaca tttatctgtc
      361 cgacggaaat tgcatcgttt ggcgcgatac aaaaggactt tgagcgtgaa aatgccgtgg
      421 ttattggtgt cagcacagac agcttctaca cccacaaagc gtggttcgag tcggatccac
      481 gtctggcgaa tataaattat ccagtaatcg cagacaccgg ccaccaagtg tccggcgctt
      541 tcgatgtgct tcttgaggac ggcgcggcat tgcggggaac tttcatcatt gatccggaag
      601 gtattctccg ccacatgagc gtcaacgaat tggatgtcgg gcgcaacgtc agcgaaacgc
      661 tgcgggtgtt acaggcgctg cggacaggcg aactatgtcc cgtcggatgg aagcccggtg
      721 aatcgacgct aacaagctac gacgaatggc tggcaaaggc gttgccgcgt ttgtcaaaac
      781 aggtgttggt agatgcaacc aaaaagttgc agaccaccaa atactctgcc ggtcagatgg
      841 tctttgaaca aggcgacgca cccgatcgct tctacatcat cagcgttgga gaagtagagg
      901 ttatacggcg taaacgcgat ggtagcgaga aaatattagc ggtccttcat ccgggcgatt
      961 actttggcga gattgggctc ctgactgaag cacgtcggaa cgcttcgata cgcgccaaga
     1021 ctgatgtgga attgcttgca atgagctggg acgattttcg gaaagttatt gaatcgtccg
     1081 aagccagtcg caaggatttt gctgacatta tgcgcgagag attggcgcaa acctgagaca
     1141 gcagaaccat tttcgagtta agtataaagc gcacttaacc aagcgctgaa gtcaacgcca
     1201 atcagcaggg caaagtttcg gagccgttcg cacggtaatt cgggtttacg atgaagctgg
     1261 caacgtgatt gaaacgcacg agcacgcggg cgatttcaat gagtggtgag
//
LOCUS       DATCGC010001515         1070 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_355241, whole genome shotgun sequence.
ACCESSION   DATCGC010001515 DATCGC010000000
VERSION     DATCGC010001515.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1070
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_355241"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..919
                     /locus_tag="VIJ87_14525"
     CDS             <1..919
                     /locus_tag="VIJ87_14525"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA];
                     GO_function: GO:0071972 - peptidoglycan L,D-transpeptidase
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HEY5445651.1"
                     /translation="KTEGESTDNKIAAAGPNAVPVDTRVVVNIPAFRMDLFQDGKLIK
                     SYKIGIGYPEFPLPQGLRKAQSIIFNPPWTPPDSPWVATMKDVSPGELVEAGSKLNPL
                     GPIKIPIGAPSLIHGGKPASKIGRFASHGCVGLTNAQVKDFAKLLAQASSTEVSDQAI
                     ASFLQDKTRTRVVKLHQAVPVELRYETIVVEDGKLHIFKDVYSQNTNTEENLRKVLDA
                     QGVSFEDFSVAEKEKVLAALNAMSVHPKKVVDTKTSAKNVETKSTKNAKGENVVEIGS
                     VTLKGYPAPVNLDTGNGTSVVAARTDKNR"
BASE COUNT          290 a          260 c          297 g          223 t
ORIGIN      
        1 caagacagaa ggagagtcca cggacaacaa gatcgccgct gccggaccaa acgcagttcc
       61 cgttgataca cgggtggtgg tgaatatacc cgcgtttcgc atggatctgt ttcaagacgg
      121 caaattgatc aagtcgtaca aaatcggaat tggttatccc gagtttcctt tgccgcaggg
      181 tcttagaaag gcacagtcga tcattttcaa tccgccgtgg acaccgccgg actccccatg
      241 ggtggccacc atgaaagacg tttcgcccgg cgagctcgtc gaggctggca gcaaactgaa
      301 tccgctcggc ccgatcaaga ttcctatcgg agcgccttca ttgattcacg gggggaaacc
      361 ggcgtcaaag attggacggt tcgcttctca cggttgcgtg ggtctcacca atgcacaggt
      421 caaagatttt gcgaagctgt tggcgcaagc atcgtcaacc gaagtctcag atcaggcgat
      481 cgcctcgttt ctacaggaca aaactcgaac gcgagtagta aagctgcacc aggctgtgcc
      541 ggtcgaactt cgttacgaga cgatcgtggt tgaagacgga aagctccaca tcttcaagga
      601 tgtttatagc caaaacacaa acacggaaga gaatctgcga aaagtattgg atgcacaggg
      661 tgtcagcttt gaggattttt ctgtagcaga gaaagagaaa gtgctcgcgg ccttgaatgc
      721 gatgtccgtg cacccgaaga aagttgtgga cacaaagacg tcggccaaga atgtcgaaac
      781 caagtcgacc aagaatgcaa aaggagagaa tgtagttgag attggatcag ttacgttgaa
      841 gggttatcca gctccggtca atttagacac tggcaatggg acgagcgtgg tggctgctcg
      901 gacagataaa aaccgttgag ggcgtccccc acaaagtgat ggcctaggtc cttgaggaaa
      961 aatcgggaat ccctcgcacg gcagtgcggg gaaatcttca agttcaacct acataacgcg
     1021 ttgagatctt tccgaatccc acaacggcag tggagtgacc ccctagattg
//
LOCUS       DATCGC010001516         1192 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_121321, whole genome shotgun sequence.
ACCESSION   DATCGC010001516 DATCGC010000000
VERSION     DATCGC010001516.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1192
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121321"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..601)
                     /locus_tag="VIJ87_14530"
     CDS             complement(<1..601)
                     /locus_tag="VIJ87_14530"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEY5445652.1"
                     /translation="MAIQQTPQAEEFKRQLRDSLVRETVNSRALKVARHDNVYTSGDQ
                     GNMVYFIESGQIKLLMLSTDGRECLLAIHSGGDIFGELSLSGLGARLETATAMKATTL
                     KQIPCAHFFECLGRDSLFEGFVRYLAVRIADQQQVIANLVTVDSEQRLGQTLLQLART
                     MGKKDPRSIRIELRISHEELSEMVGTTRPRISLFMQRFHN"
     gene            complement(748..1089)
                     /locus_tag="VIJ87_14535"
     CDS             complement(748..1089)
                     /locus_tag="VIJ87_14535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445653.1"
                     /translation="MHTKRKPTHRSRPSQPTSAHRDAWYQVPSYNNKLPEEFFDCRVK
                     LAAVCPETALMYAVLENAFLSFHKQFESGQRLMQGAREAEEWFLAMTFIGFSLSCPFA
                     MCSDCNRASYG"
BASE COUNT          286 a          326 c          299 g          281 t
ORIGIN      
        1 gattatgaaa tcgctgcatg aacaagctga tccgcggtcg cgtggtaccg accatctccg
       61 acaactcttc atgggaaatc ctcaactcta tgcgaatgct gcgcgggtcc ttcttgccca
      121 tggtgcgagc caactgtagc aacgtctggc ctagccgctg ctcgctatcg acggtcacca
      181 ggttggcgat cacctgctgt tggtccgcga tgcgcacagc caggtagcgc acaaacccct
      241 cgaagagcga gtcgcgaccg agacactcaa aaaaatgagc gcagggtatt tgttttaggg
      301 tcgttgcttt catcgccgtg gccgtttcca agcgcgcgcc taaaccggat aaagacaact
      361 caccgaagat atctccgcca ctatggatcg ccaggaggca ctctctacca tcggtggaga
      421 gcatcagcag tttgatctgg ccgctttcga tgaaatagac catattgcct tgatcgccgc
      481 tggtgtagac gttgtcatgt cgggcgacct tgagagcgcg agaattcacg gtctcgcgta
      541 ctaaagaatc acgtaactgt cgcttgaatt cttctgcttg aggcgtctgt tgaatcgcca
      601 tcgtgcctcc aatcgaagcc cacgatgata taactataat tacaatagca gtgtaattct
      661 gggggcttgc acagtcactt gctcgggcaa taagctacaa ctttccctgg ccagagtcta
      721 gaccggattg cctccaatgc ctaagcttca tccgtatgaa gcgcggttgc aatccgagca
      781 catcgcaaac ggacacgaaa gagaaaatcc aatgaaagtc atcgctaaaa accactcttc
      841 tgcctcccgt gcgccttgca taagccgctg acccgactca aactgtttgt gaaaggagag
      901 aaacgcattt tcgagcacag catacatcaa tgccgtctcc ggacacacag cggcgagttt
      961 gactcgacag tcgaagaact cctccggcag tttgttgtta taggacggca cctgatacca
     1021 ggcgtcccgg tgtgcagaag taggttggga tggccggctc cgatgggtgg gtttgcgttt
     1081 ggtgtgcatc tcattctcca ctttctgcat tagttatacc gttatacagg tgcagtattc
     1141 tgtctacttc aaaacaattg cacacggagt tatcacacgc cctgaacagc cg
//
LOCUS       DATCGC010001517         1082 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_487974, whole genome shotgun sequence.
ACCESSION   DATCGC010001517 DATCGC010000000
VERSION     DATCGC010001517.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1082
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_487974"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..392)
                     /locus_tag="VIJ87_14540"
     CDS             complement(<1..392)
                     /locus_tag="VIJ87_14540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445654.1"
                     /translation="MGTYSLLDDKLLKEIAQSDEAGNWLILAHHPDAPGAWLVQSLDP
                     TFYLDFADLIGSVRAVRPSALQDFLRRADSLGYHVAFERDPSDVLRVYSSLNDEPTVA
                     LSSTLPGTIKGFLPFQIQGFNFLKDLPGG"
     gene            complement(577..>1082)
                     /locus_tag="VIJ87_14545"
     CDS             complement(577..>1082)
                     /locus_tag="VIJ87_14545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445655.1"
                     /translation="RRSISSHAQKHLGYEETAIREVIEREAATARRNHEEGVSRLVTK
                     NAYLELALQKAWDALIKDIAIVEPKDAVKVIETLQRFQDNNQEAALDELRVQFNMFMQ
                     AVKEVVERDRWEDIVGRTADLLRASGRTVDFDKAGEPQADEGFTEISPKELEEVISDV
                     QVVDAGS"
BASE COUNT          260 a          284 c          256 g          282 t
ORIGIN      
        1 ccccctggta ggtctttcag gaaattgaag ccctgtatct gaaaggggag gaaccccttg
       61 atagtccccg gcagggtgga cgacaacgct acggttggtt cgtcgttgag tgatgaataa
      121 actctaagta catcactcgg atcacgctca aaagccacat gatatccaag actatcagca
      181 cggcgaagga aatcctgtag agcggacggt cgaactgcac gtacgctacc gataagatcg
      241 gcaaaatcca gataaaaagt tgggtcaaga gactgtacca accacgcgcc gggtgcgtca
      301 ggatgatgtg ccagaatgag ccaattgcct gcctcatcgg actgtgcaat ctccttaagt
      361 agcttatcgt ctaggagtga gtaagttccc atagagcttc caacatggca agctctttac
      421 atttcgtaca aagatcgcct gtcctctttt cccggacaga catgggctta ccacatttgg
      481 tacagagttt agggacgtgg cggtcgaata accgggagag ccgcccgacc acatttcgga
      541 catacgacac cagtatacac ctttccacag aaacagctaa ctacctgcat ctaccacctg
      601 cacgtccgat atgacttctt caagttcttt tggcgagatt tctgtgaatc cttcgtctgc
      661 ttgaggttcg ccagctttgt cgaagtcaac agtacgtcca ctcgctcgga gtaggtcagc
      721 ggtgcgcccc acgatatctt cccatcggtc ccgctcaacc acttctttaa ctgcctgcat
      781 gaacatattg aattgtactc ggagttcatc tagtgcagct tcttggttat tgtcttggaa
      841 tcgttggaga gtttcgatga ccttaacagc atctttcggc tcaactattg caatgtcttt
      901 tatcagtgcg tcccacgcct tctgtagagc tagctctagg taggcgttct ttgtaaccag
      961 tcgtgaaaca ccctcttcgt gattacgtcg ggcggtagct gcttcccgct cgatgacctc
     1021 tctaatagct gtctcttcat agccaagatg cttctgagca tgggaagaga ttgaccgtct
     1081 ag
//
LOCUS       DATCGC010001518         1169 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_220738, whole genome shotgun sequence.
ACCESSION   DATCGC010001518 DATCGC010000000
VERSION     DATCGC010001518.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1169)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1169)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1169
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_220738"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..906)
                     /locus_tag="VIJ87_14550"
     CDS             complement(<1..906)
                     /locus_tag="VIJ87_14550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445656.1"
                     /translation="MRISGWLILIVTGTILFAHPGTVRAVEEGQFVKKEGKWEYYSSE
                     DPGLKYLYLKGLITEAEYNKGLRVLETKERLAKPNFNIDVNNGLNIRVGDRFFLKMRL
                     LVQTRYTYSTYNQAWGSIGDSRNEEILGGQVEFRAFRRQSDSSQFLIPRARLQFMGYA
                     FDPDFRYNVSLQMDSTPSNQEGSNGKAGLLDAYVSSWHIPWANIQLGQQKVWFNRALI
                     SNIATSSFADNMIVQNVFASNLQNPRDIGINILSDEEQYKFNYAFGVWGGVGPNLGRD
                     GTSVSQNVLPPTGGGGVNSGVTRTYN"
BASE COUNT          259 a          317 c          292 g          301 t
ORIGIN      
        1 gttgtaggta cgcgtgactc cagaattgac tccaccgcct cccgttggcg gcaacacatt
       61 ttggctcacg gatgttccat cccgtcccaa attcggcccg acgccgcccc acacgccgaa
      121 ggcgtaattg aacttgtatt gctcctcgtc gctcagaata ttgatgccga tgtcgcgggg
      181 gttttggagg ttggaggcaa acacgttctg tacgatcatg ttgtccgcaa aacttgatgt
      241 ggcaatgtta ctgatgagtg cacgattgaa ccagaccttt tgttgtccga gttgaatatt
      301 ggcccaagga atgtgccagg atgacacgta ggcgtccagg agtccggctt tgccgttgct
      361 tccttcttga ttcgatggcg ttgaatccat ctgcaaggag acgttgtaac gaaagtcagg
      421 atcaaaggca tagcccatga attgaaggcg cgcgcgagga atcagaaatt gactcgagtc
      481 ggattgccgc ctgaaggcac gaaattccac ctggcctccg agaatttcct cattccgtga
      541 gtcgccgatg gatccccacg cctgattgta ggtgctgtag gtgtaacgag tctgcaccag
      601 cagccgcatt ttcaaaaaaa atctgtcacc gacacggatg ttcaacccat tgttgacatc
      661 aatattgaag ttcggtttgg cgagacgctc tttcgtttcc aacacccgaa gacccttgtt
      721 atattccgcc tcggtgatga gacctttgag gtagagatat ttcaagccag gatcttcact
      781 cgaatagtat tcccatttcc cttccttttt gacgaactgg ccctcttcaa ctgcccggac
      841 tgtgccgggg tgggcgaaca ggatcgttcc cgtcacgata agaatcaacc atccggaaat
      901 tctcatgtcg tcgctccttc atgacatggg aacttccggt ggtccggtca gtccgcaaca
      961 taaattctag gtccatctcg atcaccacct ttagtcgtct gagaggcggt gagttccttc
     1021 tctaactgaa cgagtcaatg ccacgcctac ccagctaggg atgcgcggcg cgacggttcc
     1081 agttccacgc gcactttttc tctgcgttcg atttggacga ccttcgaatc gtgcacgatg
     1141 atctccactg acccgaaacg caggtcttt
//
LOCUS       DATCGC010001519         1057 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_55763, whole genome shotgun sequence.
ACCESSION   DATCGC010001519 DATCGC010000000
VERSION     DATCGC010001519.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1057)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1057)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1057
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55763"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..916
                     /gene="mreC"
                     /locus_tag="VIJ87_14555"
     CDS             <1..916
                     /gene="mreC"
                     /locus_tag="VIJ87_14555"
                     /inference="COORDINATES: protein motif:HMM:TIGR00219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HEY5445657.1"
                     /translation="VERYLMATVRTQREIRQRAPLWLIALLFANLVIMAVDARDSNGK
                     QKVVRIWTQTFASPIQSASSKASGATSGFFRQIFHFQSIARENEDLKQRLATAEQQIH
                     TAQQQAAENERLKALLNVKEQSQYQMVTARVIARDPSIWFNTITINSGSSSGVAINMP
                     VVSGTGVVGRVITVSPWASQVMLLTDEKAGAGAVVGQLGQSGALGSVRGRPDLGLIEM
                     RYVSGLEKVEVGDFVMTTGQDGIYPPGLNVGEVVDVKNGTATQAHQILIRPGARMDQL
                     EEVAVLLYRAPQRIAPEQTLPNADKPKK"
BASE COUNT          269 a          278 c          272 g          238 t
ORIGIN      
        1 agttgagcgt tatctaatgg caaccgttcg cacccaaaga gagattaggc agcgagctcc
       61 cctctggctc atcgcgcttc tctttgccaa tctcgtaatc atggctgtcg atgcgcgcga
      121 cagtaatgga aaacagaaag tcgtccgcat ctggacacag actttcgcat ccccgataca
      181 aagtgcatca tcaaaagcca gcggcgctac gtctggcttt ttccggcaga ttttccattt
      241 tcagagcatt gctcgtgaaa acgaagatct caaacagcgt ctcgccactg ctgaacagca
      301 aatacatacc gctcaacagc aagccgctga aaacgaacga ctgaaagccc tgctcaatgt
      361 aaaagagcag agtcaatacc agatggtgac cgcgcgagtt atcgcacgag acccttcaat
      421 ttggttcaat acgatcacta ttaactccgg cagtagttca ggtgtcgcca tcaacatgcc
      481 tgtcgtttcc ggaaccggtg tcgttggtcg cgtcatcacg gtgagtccat gggcttcgca
      541 agtgatgtta ctcacagacg agaaggcggg agccggcgcc gtcgttggac aactcggtca
      601 gtcgggagcg ctcggttccg ttcggggtcg acccgacctt ggattaatcg agatgcgtta
      661 tgtgtcaggg ttggagaagg ttgaagttgg cgacttcgtc atgacaaccg gccaggacgg
      721 tatttatccg cctggactga acgtcggcga agttgttgat gttaagaatg gaactgcaac
      781 gcaagcacac cagatactga tcaggcctgg tgctagaatg gatcaattgg aagaggttgc
      841 cgttctactt taccgcgccc cccagcgtat cgctcctgaa caaaccctcc cgaacgcgga
      901 caagccgaag aaatgaaaat attgttgatt gccgattgcc gattgctgat tgatttacaa
      961 tccatgcgtt tccgcaaccg cgatcaaatc cgtcagcaga aagaagaggc caattggcaa
     1021 tcggcaattg gcaatcggca ctgtccctat gcctcag
//
LOCUS       DATCGC010001520         1014 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_220771, whole genome shotgun sequence.
ACCESSION   DATCGC010001520 DATCGC010000000
VERSION     DATCGC010001520.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1014)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1014)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1014
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_220771"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1014
                     /locus_tag="VIJ87_14560"
     CDS             <1..>1014
                     /locus_tag="VIJ87_14560"
                     /inference="COORDINATES: protein motif:HMM:NF018899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="POTRA domain-containing protein"
                     /protein_id="HEY5445658.1"
                     /translation="RDSLQSLFDSGRIANARVEVVEQGNSKSSPIRLKFIVQRQVQIG
                     DVRIDLGVVTGSPISTDELRARLNFVQPGTRLSKQLIARNADEIQVYLRDRGYFNATV
                     ESVEQLDPNGIRATVTYKVNPGEQAKVESFVIDIKAFDPATVKNSLVLQPGVPFTRDA
                     LGADVSRVRDAMIASGFLTPILEDARVKRDAEKNTVAIELTGVKGPKVAVVVKNFELN
                     DTTQRELLPVLREGNIDYSAIVEGARRLRNKLQEQGYFFTEVIPTCTVSNAPPELGPN
                     GTEETCQNLNPNLLTNGDVTIAYDVEKGRRFRLSDIRISGTNKLTFADVEAELKSQKA
                     NAIG"
BASE COUNT          263 a          266 c          262 g          223 t
ORIGIN      
        1 ccgcgactca cttcagtcgc ttttcgattc cggccggatc gcaaatgctc gggttgaagt
       61 cgtcgagcag ggaaacagta agtccagtcc gatacgactc aagttcatcg tgcagcggca
      121 agtccagatt ggtgacgtac gaattgattt aggcgtcgtc actggctctc cgatctcgac
      181 agatgagctt cgcgctcgct taaactttgt ccagcccggc acacgtcttt caaaacaact
      241 catcgctcgc aacgctgatg aaattcaagt ctatttgcgt gatcgaggtt acttcaacgc
      301 cacagtggag tcggttgagc agcttgatcc aaatggaatc cgcgccaccg tcacgtacaa
      361 ggtcaatccg ggagagcaag ccaaggttga gtcgttcgtg attgatatca aggcctttga
      421 tccggcaaca gtaaaaaact cactagtcct tcaaccggga gttcctttca cacgtgatgc
      481 gcttggtgca gatgtaagtc gtgtgcgcga cgccatgatt gcgtcaggct ttctgacgcc
      541 gatactcgaa gatgctcgag taaagcgcga cgctgaaaag aacaccgtag ccatcgagtt
      601 aaccggcgtc aaaggtccga aggtggctgt tgtcgtaaag aacttcgagc tcaacgacac
      661 gacacaacgc gagctcttgc cggttcttcg agaaggtaac atcgactact cagcgatcgt
      721 tgaaggtgct cgccgactgc gaaacaaact tcaggaacag ggttactttt tcaccgaggt
      781 aattccgact tgtacagtta gtaacgcgcc accagaactc ggtccgaatg gcaccgaaga
      841 aacctgccag aacctcaacc cgaacttgtt aaccaatggc gatgtcacga ttgcgtacga
      901 cgtcgagaaa ggtcgtcggt ttcgactcag cgacatccgg atcagtggaa ctaataaact
      961 cacctttgcg gatgtcgaag ccgaactgaa aagtcagaag gcgaacgcga tcgg
//
LOCUS       DATCGC010001521         1684 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_55794, whole genome shotgun sequence.
ACCESSION   DATCGC010001521 DATCGC010000000
VERSION     DATCGC010001521.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1684)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1684)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1684
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55794"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..226
                     /locus_tag="VIJ87_14565"
     CDS             <1..226
                     /locus_tag="VIJ87_14565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445659.1"
                     /translation="FNTRAAASAPEPPAVQSIDMAVAAAALHYLKQQKRGTGSTTVSV
                     PNRWRMSGRSAALSARQNVGERVPSEWRKR"
     gene            223..744
                     /locus_tag="VIJ87_14570"
     CDS             223..744
                     /locus_tag="VIJ87_14570"
                     /inference="COORDINATES: protein motif:HMM:NF012584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HEY5445660.1"
                     /translation="MKLKASVNDQDHNLTIHEVEDKVSIEIDGRQYEVQVHNSEDSSY
                     VLIHNNQVYDCRVEPVRHSRDSFQVSLRNQRHLISIIDPRRLRTDENSDRHHHGPTEI
                     AAQMPGKVVRVLVEAGTAVEKGTGIVIVEAMKMQNEMKSPRAGVVLAVNVKQGDTVNA
                     GDVLATVGEGLDA"
     gene            737..1561
                     /locus_tag="VIJ87_14575"
     CDS             737..1561
                     /locus_tag="VIJ87_14575"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD hydrolase-like protein"
                     /protein_id="HEY5445661.1"
                     /translation="MREGLEKDGESGRWGDGEIDSPQTDADSSPTHPVSVPPSDLRIL
                     LWDIDGTLIRSRRTGAYKEYTIPVLEEVFGTSGRLASMRVSGMTDLQIIAEALREEGF
                     THHDVRGKIHQLSEKLTAEARRVTGNGEEFFELLPGVTNTLQVLDHHPRYQSALLTGN
                     IEPMAFLKMELVGLDQFFKLPGAFGEESHERRDLPERAAQRINARLQLQLRPEQFIVI
                     GDTPNDIDCARHFGARAVVVGTGRFYSTEELLACKPDAWLADLSDAELVVRTLDGL"
BASE COUNT          426 a          419 c          479 g          360 t
ORIGIN      
        1 ctttaacacg cgagcagcag cctcagcacc agagccccca gcggtgcaat ccatcgacat
       61 ggctgtagcg gctgctgcgc tgcactacct aaaacaacaa aagcgaggta ccggatcaac
      121 aaccgtgtca gttcccaatc ggtggagaat gtcaggtcgt agtgctgccc tcagtgccag
      181 gcagaatgtc ggtgaacgcg ttccttcaga atggaggaaa cgttgaagct caaagcatcg
      241 gttaatgatc aggatcacaa tctgacaatc cacgaagtcg aagataaggt aagtattgaa
      301 atcgacggac gccaatacga agttcaagtc cacaactccg aagactcctc atatgtgctg
      361 attcacaaca atcaggtcta tgactgccgg gttgaacccg ttcgccactc gcgtgatagt
      421 tttcaagtca gcctaaggaa tcagcgccac ttgatcagca tcatcgatcc gcgccgacta
      481 cggaccgatg aaaactcaga tcgccaccat cacggtccaa cggaaatagc cgctcaaatg
      541 cctggtaaag tcgttcgtgt gttggtcgaa gcaggaaccg cagttgaaaa gggtactggc
      601 atcgtgattg tggaagcgat gaaaatgcaa aacgagatga agtcaccacg tgcaggtgtt
      661 gttctggcgg ttaatgttaa gcagggagac acagtgaatg ctggtgacgt gctggcgacg
      721 gtgggggagg ggctagatgc gtgaagggct ggaaaaggac ggggagagtg ggcgatgggg
      781 agacggggag atagattcgc cccagactga cgccgactct tcgcccactc accccgtctc
      841 cgtcccccct tcggacctac gcatcctcct ctgggatatc gatggcacgt tgattcgttc
      901 gcgtcgtacc ggcgcttaca aggaatacac aattccggtt ctcgaagagg tgtttgggac
      961 gtcgggacga cttgcgagca tgcgagtttc aggaatgacg gatttgcaaa tcatcgctga
     1021 agcgttaagg gaggaagggt tcactcatca tgatgtgcgc gggaagattc atcaactgag
     1081 tgaaaaactc accgctgaag ctcgaagagt aaccggcaat ggtgaagagt tttttgaatt
     1141 acttcccggg gtaacaaata cgctccaggt actcgaccac cacccgcgct accagtcggc
     1201 gttgttgaca ggaaacatag agcccatggc ctttctgaag atggaacttg taggactcga
     1261 tcagttcttc aaactgccgg gcgctttcgg tgaggaatcg catgagcgtc gcgaccttcc
     1321 agaacgagct gcccagcgca tcaacgcaag acttcaatta caactcagac cagaacagtt
     1381 tatcgtcatt ggcgacacac caaacgacat cgactgcgct cgacactttg gggctcgcgc
     1441 tgtggtagtt ggaaccggac gattctattc caccgaggag ttgttggctt gtaagcccga
     1501 tgcgtggtta gcggatttgt cggatgctga gttggtggta agaactcttg atgggttgtg
     1561 agactcgacg acgctgatga tcgattctaa gtcccgttga tgccaggtgg cgtaacgccg
     1621 gtgcagtagc ccgactgtca aggagggctc aggggatact tatcaagcag tcggagccct
     1681 cctt
//
LOCUS       DATCGC010001522         1961 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_323060, whole genome shotgun sequence.
ACCESSION   DATCGC010001522 DATCGC010000000
VERSION     DATCGC010001522.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1961)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1961)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1961
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_323060"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1961
                     /locus_tag="VIJ87_14580"
     CDS             <1..>1961
                     /locus_tag="VIJ87_14580"
                     /inference="COORDINATES: protein motif:HMM:NF024754.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEY5445662.1"
                     /translation="YLFKRVFQPAVDVPSFSEEELARLGFVAHEPSEAKREPKDEGPL
                     VELLIATRPRAEDYRRPEQDFRELDAIQIANRIIELKRENPERPYSDIALLFRAMTLV
                     HFYELAFRQANIPYQTVLGRGFYKREEVTDLIQLLRFLDNGTDELALAAVLRSPLCGI
                     SDNALFALRSAPPVDEAEGTRTSLPTRRLYSALRDHDDISFINNEEHALLERSAKLIG
                     HLVRRRHHYSIEDLLRFAVSESEFETVVAANFDGAQRLANVQRLFTLAARFERSGNHL
                     IRDFVRYVEEFEAVGARESEGQIDEAANAVKLMTIHQAKGLEFPVVIMPELHRSKNPP
                     EFSFMLDRHRGLTLKVPDGRGNRVAGCTFSDFEKRQAWREQFESMRLLYVAATRAEDR
                     LILTGSTEDLSRLNSGADSWLKLIWQTLELENRSLGGVVDLDEDVQIKLSVTVEPKLE
                     TYAAAGPGTDFEDPAKSHSLLSAFPLLKPIERIDTSGVHRLSVTQLINYQRCARQYYF
                     DRVLQLPSPDELAVWNNAEAPEPPANLTATLKGAVIHRFCERYTSDQNAEECLRHTFD
                     EVVRFRQAELADRLVEIDTEAAVKDLLPLALNYLASDVYSRVEQARDVIFETGSKPSG
                     EAGLWSELAFRLRRPLGVVSGAIDKLLIR"
BASE COUNT          464 a          511 c          516 g          470 t
ORIGIN      
        1 taccttttca agcgtgtatt ccagcctgcc gtcgatgtgc cttcattctc ggaagaggag
       61 ttggcaaggc tcgggtttgt tgctcatgaa cccagcgagg ccaaacgcga accgaaagac
      121 gaaggtccac ttgtagaatt attgattgcg acgcgaccgc gtgccgaaga ctaccgtcga
      181 ccggaacaag acttccgtga actcgatgcg attcagatcg ccaaccgaat catcgagctt
      241 aagcgggaaa acccggaacg accctacagc gacatcgcat tgttgtttcg cgcgatgacc
      301 ctggtgcact tttacgaact ggcttttcga caagcgaaca tcccttacca aacagtcctg
      361 ggccgtggct tctacaaacg cgaagaagtt acggacctca ttcaactgtt gcgcttcctg
      421 gataacggaa cggacgagtt ggccctagcc gctgtacttc gttcaccgct ctgcggcatc
      481 tctgacaacg cattgtttgc cttacgctca gcgcctcctg ttgacgaagc tgaaggaacc
      541 aggacttcat tgcccactcg tcgtttgtac tcagctctgc gcgatcacga tgacatcagc
      601 ttcattaaca acgaagaaca cgcgctgctc gaacgttccg cgaaacttat cggtcatctc
      661 gtaaggcggc gtcatcacta ttccatcgaa gacttgcttc ggtttgcggt gagtgaatct
      721 gaattcgaaa ccgtcgttgc tgcaaacttc gatggcgcac aacgtctcgc caacgtgcag
      781 cgcttattca ccctggctgc gcgttttgag cgttcaggaa atcatttgat tagagacttc
      841 gttcgttacg ttgaagagtt tgaagcggtc ggtgcgaggg aaagcgaagg ccagatcgat
      901 gaagccgcca atgctgtaaa gctgatgaca attcaccagg cgaaaggtct tgagtttccg
      961 gttgtgatta tgcccgagtt acatcgctcg aagaatccgc ctgagttttc gttcatgctc
     1021 gaccgtcatc gaggactcac gctgaaagtt ccggatggtc gtggaaatcg agttgccggt
     1081 tgcacgtttt ccgatttcga aaagcgacag gcgtggcgag aacaatttga gagcatgcgt
     1141 ttgctttatg tagccgcgac acgcgccgag gatcgattga ttcttaccgg ttcaaccgaa
     1201 gatcttagtc gactcaatag cggcgcggat tcctggctga agttgatctg gcaaacgctc
     1261 gaacttgaga acagatccct cggcggcgtt gtcgatcttg atgaagatgt tcaaatcaaa
     1321 ttgtcagtaa ccgtcgaacc taaactcgag acgtacgccg ctgcgggtcc cgggaccgac
     1381 tttgaagacc cggcaaaaag tcactcgctc ttgagcgcct ttccgctctt aaaaccaatc
     1441 gaacgtatcg atacaagtgg agttcatcgt ttaagcgtca cgcagctgat caactatcag
     1501 cgttgcgctc gacagtacta cttcgatcgt gtgttgcaat tgccgtcacc cgatgaattg
     1561 gcagtatgga acaacgctga agcacccgag cctccagcga atttaacggc gactttgaaa
     1621 ggcgcggtta ttcatcgctt ctgtgaacgt tacacttcgg atcaaaacgc tgaagagtgt
     1681 ctgcgacaca ccttcgatga agttgttcgg tttcgtcagg cagaacttgc ggatcggctc
     1741 gtagagattg acacggaagc ggcggtcaaa gacctgctgc ctttggcttt gaattacctc
     1801 gcgagcgatg tctattcacg agtcgagcag gcccgcgacg tcatatttga gacagggtcg
     1861 aaaccatcag gtgaagctgg actatggagt gaactcgcgt ttcgattgcg tcggcccctg
     1921 ggagttgtca gcggcgcgat cgacaaactg ctgatcagac a
//
LOCUS       DATCGC010001523         1105 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_355519, whole genome shotgun sequence.
ACCESSION   DATCGC010001523 DATCGC010000000
VERSION     DATCGC010001523.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1105)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1105)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1105
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_355519"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(287..508)
                     /locus_tag="VIJ87_14585"
     CDS             complement(287..508)
                     /locus_tag="VIJ87_14585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445663.1"
                     /translation="MSEERITRREIIKKAAYVAPLIFTIPASFSFASAGSGDYYIGTT
                     EKDKNNQGNKDKKDYENSFVDLTNKTRTK"
     gene            complement(532..855)
                     /locus_tag="VIJ87_14590"
     CDS             complement(532..855)
                     /locus_tag="VIJ87_14590"
                     /inference="COORDINATES: protein motif:HMM:NF017239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PqqD family protein"
                     /protein_id="HEY5445664.1"
                     /translation="MAKQSTTADHNRASSDVGVKQEGRPQRRLELVCRIIEGETVILN
                     REAGVLHRLNPTASFIWECCDGSAGVDDIVARCVHAYAVDFMTCRKDVSETVLKLESL
                     NLLTI"
BASE COUNT          285 a          272 c          236 g          312 t
ORIGIN      
        1 gtctcgatga taagatcttt gtcgaacttg caaatgaaat ctccgagccc tcgcgcactc
       61 acaggacaat ctccgtgacg cgttatgaac aggccatcgg ggaacccgga agtgatatgg
      121 taactgaccc gcgcttgtct aatcggttgc ttaaaagaac ggtaaacatt ttctaataga
      181 gcgtgagcat cctgatcggc acactcgatt tgcacgccgc aatcaagaat ctccaactga
      241 aaagcagcca tttaacaaaa aatcaagcga atgagccggc tcccggctat ttggttcttg
      301 tcttgttcgt tagatctaca aaactgtttt cataatcttt tttgtcttta ttaccttgat
      361 tgttcttgtc tttctccgtc gtaccgatgt agtaatctcc ggatcccgcc gaggcaaagg
      421 aaaaactggc aggaatcgtg aaaataagcg gtgcgacgta agctgctttc ttgattattt
      481 ctcttcttgt aatgcgctct tcagacatcg cgattctccg ttgttatacc tttatatcgt
      541 cagcaggttt agggactcca attttagaac ggtttcactc acatctttgc gacaggtcat
      601 aaaatctacg gcataggcat gcacgcaccg agcaacaata tcatccacgc ctgcactgcc
      661 gtcgcagcac tcccaaatga aactggctgt cggattgagc cggtgaagca ctccggcttc
      721 acggttcagt attaccgttt cgccttcgat aattctgcac acgagttcca aacgacgttg
      781 tggacggcct tcttgtttta ctccgacgtc ggaactggct cgattgtgat ctgctgtagt
      841 gctctgtttc gccatacttt gattcaaaca tgagcaatcg gtataccgat ggagagagat
      901 tggatcgaca tgaaacacgc atactattca actgtttagt agactgtaaa cgttctaaca
      961 ttatcacctt tgccataatc gacataaaac tgtcacgcac cgccttggcg cgtgtcaatg
     1021 agacaagata tcagattcaa ctcgtagaat aaccgagatt tcagtaaagt gccccgattg
     1081 cgcttgcgct ctcgattgtt cgata
//
LOCUS       DATCGC010001524         2537 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_323087, whole genome shotgun sequence.
ACCESSION   DATCGC010001524 DATCGC010000000
VERSION     DATCGC010001524.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2537
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_323087"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..655
                     /locus_tag="VIJ87_14595"
     CDS             <1..655
                     /locus_tag="VIJ87_14595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445665.1"
                     /translation="NSNVSVNTNTETKPVEQTPTPEVDNYTPPLGTTAFENSSERLDG
                     KLAEHYFDFSFYYPESWQKDAKAGIPGASSFVKVERRLPPDFTQENFTVGWYTSSGTY
                     DGDLPNYPRRVEEFSSALSKNIPEYRKVSEGPTTVNKMKAYEFRWTGFSKGTDKGDLQ
                     LWGRVIFLPTGKEGDSAGATLTMLSTNLATELTSVDDLGVKGEAPVILESFRFGKKK"
     gene            683..1294
                     /locus_tag="VIJ87_14600"
     CDS             683..1294
                     /locus_tag="VIJ87_14600"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEY5445666.1"
                     /translation="MKKFWTPVRIASTVIVLTLVVVFASCNSNDVTPTANAPTAAPAD
                     ARNSAAPAPLLTLPTSVMEAQLRAASGSPIKLSDYSGKVLLVNLWATWCGPCRRETPE
                     LVKLHKEFQARGVEMIGLSTENPDASAESVREFVRVFNVDYHVGWATPEVALALMQGR
                     DSIPQSFVITREGRILKRFIGFSPTATPPQIRQALEDALAAKG"
     gene            complement(1296..1520)
                     /locus_tag="VIJ87_14605"
     CDS             complement(1296..1520)
                     /locus_tag="VIJ87_14605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445667.1"
                     /translation="MGIDKNKVRTQDELNEPAPTDLIEERVDAKLKKIEGNAKRDVAQ
                     GLENNELAREGERLKKEGERELKEAKAKRA"
     gene            1677..2153
                     /locus_tag="VIJ87_14610"
     CDS             1677..2153
                     /locus_tag="VIJ87_14610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445668.1"
                     /translation="MRSSISGRLKKVARLFLAFSVSFWMAGAGCLWGCSNTAMASEMP
                     GLNQPAVASHSCHARTHDCCAKKLSKKTAGLPAPRSVLSLLGMQSDGMMKDCPLVVNS
                     NAAITKATTDLSDSSELPIADPPKIESPIKLVDLSSTPIQFLNRGPTYLRFCVFLI"
BASE COUNT          607 a          651 c          639 g          640 t
ORIGIN      
        1 caattcaaat gtaagcgtaa acacaaacac cgagaccaag ccggtcgagc aaactccgac
       61 tcccgaagta gacaactaca ctccgccact tggaacaaca gcatttgaaa actccagcga
      121 acgtctcgac ggaaagctcg ccgagcatta cttcgacttc tcgttttatt acccggaatc
      181 gtggcagaag gacgcgaagg ccggaatccc cggggcttcc agctttgtga aagttgaacg
      241 tcgcttgccg ccagacttta cgcaggagaa cttcacggtc ggttggtaca caagttcggg
      301 cacgtatgat ggagatcttc caaactaccc gcgacgtgtc gaggagttta gtagcgcgct
      361 gtcaaagaac attcctgaat atcgaaaagt ttcagaaggt ccgacgaccg tcaataagat
      421 gaaggcttac gaattcaggt ggactggttt ctctaagggt accgataaag gtgaccttca
      481 attgtggggt cgcgtcatct tccttcccac gggaaaagaa ggcgacagcg cgggcgcaac
      541 cttgacgatg ctgtcgacaa atctggcaac cgagttgacg tccgttgacg atctcggagt
      601 aaaaggtgag gctcccgtaa tcctcgagtc gttcaggttt ggcaagaaaa agtagtacta
      661 aacaggaagt agttaagcaa caatgaaaaa gttttggacg ccggttcgga ttgcctctac
      721 ggtaattgtt ttgactctgg ttgttgtctt cgccagttgc aattccaatg acgtgactcc
      781 cactgcgaac gccccaactg cggcacccgc tgacgcgcgg aatagtgccg ctcctgcgcc
      841 gttgctcact cttccgacca gcgtgatgga agctcaatta agagcagcga gcggatcgcc
      901 aatcaagcta tcagactatt ccggcaaagt gttgttagta aacttatggg ccacttggtg
      961 tggcccgtgc cgcagggaaa ctcctgagct cgttaagttg cacaaagagt ttcaggcgcg
     1021 tggggtggag atgattggac tgtcaacaga gaaccctgac gcctcagctg aaagtgtgcg
     1081 cgagtttgtc cgcgtcttca acgttgacta ccacgtcggt tgggcgactc cggaagtcgc
     1141 actggcgctt atgcagggtc gcgactcaat cccgcagagt tttgttatca cacgcgaagg
     1201 acggatcctg aagcgcttca ttggttttag cccgaccgca acccctccac aaattcgcca
     1261 ggccttggaa gatgcgctag ccgcgaaagg ctaactcaag cgcgcttcgc ttttgcctct
     1321 ttgagctcgc gctcaccctc tttcttcaat ctttcgcctt cgcgcgcgag ctcgttgttt
     1381 tctagcccct gggcaacgtc cctcttagcg ttaccttcaa ttttcttcag cttagcgtcg
     1441 acccgctctt caatcagatc agtcggtgct ggctcattca attcatcttg cgtgcgaacc
     1501 ttatttttat cgattcccat gaaaatacgt tctccctttt ggtctgacac taacctagca
     1561 accgaaccat ttcagatgtg ctgggaattg atgacaattt gacgcttttg ccgactcgaa
     1621 tttgttcatg aggttctcga caaactaatt gtgcagcgtt agactcaaca ctagaaatga
     1681 ggtcttcaat ctcaggcaga cttaagaagg tagcgcgact cttcctggcg ttcagtgttt
     1741 ctttctggat ggcgggagct ggatgtctgt ggggttgcag caacactgcg atggcctctg
     1801 agatgccggg gctgaatcaa ccagcggttg ctagtcattc ctgtcatgcg cgtacccatg
     1861 attgctgtgc aaagaagttg agtaagaaga ccgcaggttt accggccccc cgctcagtgc
     1921 tttctcttct cgggatgcag tcagacggca tgatgaagga ttgtccgctc gtcgttaatt
     1981 ccaacgctgc tatcacaaag gccacgactg atctgtcaga ttcgtctgag cttccaattg
     2041 ctgatcctcc gaagatcgaa agcccgataa agttagttga cctcagttcg actccgattc
     2101 aattccttaa tcgcggtccc acatatctac gcttctgcgt tttcctgatc tagaaaccat
     2161 gttgcaagtc agacattcgt gatctgattt catgtgcggt ggtgtgtcta ttgactgcca
     2221 tcgcgaccat tggtcttctt tgaaaggaaa acaaaatgaa accccacaag agcactctct
     2281 taatcgtgct gttcgggctt ctactaactg tttgtgcagt tgccttagcg caaacttcga
     2341 gtcagagcgc taatcaaggt gccgaaaaga aacagggtga agcctcgtgt tgtaccgact
     2401 cctgttgttg caaaggtgat tcgtgcccga tgaaaaccga aggcgcgcga actactaatg
     2461 cgactgatgt gaaagacggc tgttgttgct gcgcaggtga ttcatgcgaa atgaaaatgt
     2521 cagattccat gaagaat
//
LOCUS       DATCGC010001525         3663 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_420012, whole genome shotgun sequence.
ACCESSION   DATCGC010001525 DATCGC010000000
VERSION     DATCGC010001525.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3663)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3663)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3663
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_420012"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>3663)
                     /locus_tag="VIJ87_14615"
     CDS             complement(<1..>3663)
                     /locus_tag="VIJ87_14615"
                     /inference="COORDINATES: protein motif:HMM:NF017930.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucoamylase family protein"
                     /protein_id="HEY5445669.1"
                     /translation="IRFRPTALAVLSFPTFIWLLSPLIAYLVSKPIVSKRKLLSGRDV
                     EFARSIARLTWRFFETFVTAQDNWLPPDNFQEDPTPVVAHRTSPTNIGLLLLATSTAR
                     DLGYVSSLELVERQELTFGTIVKLGKLHGHLFNWYETTTLEPLLPEYISTVDSGNFAG
                     HLVAVKQANIELPDLRLFDDRVVAGLSDTINAIGIEAERLDSIRQRTEVVTVRQLQNE
                     IEDCQKLLVNNSRESLTSWLIIIDSMCRRASEIDDIVNALSHEHGEESFKELRWWVGA
                     LLHQAECWRRDIDTLCGWTRLIPLLETTSDEPQPTNGWEKIISILSSVPTLAEVPRLC
                     DRVLVQLAGQSDPEGPSTEILARLTRALESSSKNAGDLLSRLSRLARACDQTVEDMDF
                     EFLFDQERKLFPIGYNVTASRADNSYYDLLASEARLASFIAIAKGDVPQEHWFRMGRP
                     LTTVNGGRALISWTGTMFEYLMPLLVMRNYAGTLLDETYHSVVQRQIEYGEERGVPWG
                     ISEAAYHVRDLRLNYQYGPFGVPGLGLKRGLIEDVVVAPYATMLAAEIDPTQALRNMR
                     LLVGEGALGRYGFYESIDYTSERLPENQNRVVIKAFMTHHQGMSLVALLNALEGNRME
                     NRFHSDPAVQATELLLQERIPVRVPTAHPRAEEVLTGRVSQTPQGMIARVYDTPDLDT
                     PRTQLLSNGAYSVMLTTAGAGYSQCDGNAVTRWREDVTRDHWGAFVYLRDVRSGEIWS
                     AGHQPIRKRPTAYRVAFSEDKADFRRVDSGISTRMEVVVSAEDNAEIRRVSLTNNSSR
                     VREIELTSYCEIVLASPQADAAHPAFSNLFIETEFFSAENAILAHRRQRSSDDPQLWA
                     IHVVVAEGEVVGAIQYETDRGRFLGRGRTPANPIAVMDDRPLSNTTGAVLDPVFSLRR
                     RLLIEPNQTISCSFTTGVAKSRDEALALADKYHDPSIFERELRLSWTKAQVEMSHLKT
                     DAEEAHLFQRMASRIIYSDPSLRPRPHVLALNTKAQSSLWAHGISGDLPIVVVRIEKS
                     ADLQMVRKLVRGLEYLHFKGLRADLVILNDSPTTYQQELHRDLETLIRTSGLQGLQDK
                     PGGVYLRRADQMSESDRILLHAVARVVIVTERGPLEDQLERNQRESPLPPQLIARAAP
                     QNYPEPLVPPADLSFFNGLGGFQQGGREYVTVLGAEQWTPLPWSNVIGNRVGFGFQVT
                     ETGGGYTWSVNSRENRL"
BASE COUNT          838 a          963 c         1004 g          858 t
ORIGIN      
        1 caaacgattc tcacgactgt tgacggacca tgtataccca ccaccagtct cagttacctg
       61 gaaaccaaat ccgactcgat ttccgataac gtttgaccat ggcagtggag tccactgctc
      121 agcgccaagc actgtcacat actcgcgacc accctgttgg aatcctccga gtccgttgaa
      181 gaaagaaaga tcggcgggtg gcaccaaggg ctccggataa ttttgcggtg ccgctcgagc
      241 aatcaattga ggcggtaacg gcgactctcg ctggttgcgt tcgagttgat cctcaagtgg
      301 gccgcgctca gtaacaatca ccacgcgcgc aaccgcatgc aggaggatcc ggtctgactc
      361 cgacatttga tctgcgcgac gcaaatagac accgccgggc ttgtcctgta gaccttgcag
      421 tccactggtt cgaatcagcg tctccagatc gcgatgaagt tcttgctgat aggttgtggg
      481 gctgtcgttg aggattacga gatcagctct cagccctttg aagtgcaaat actcgagacc
      541 tcgcaccagt tttcgcacca tttgaagatc agcgcttttc tcgatccgca cgacaactat
      601 tggtaagtcg ccgctgattc cgtgggccca caggctcgac tgcgctttcg tgtttagagc
      661 gagcacgtga ggtcgtgggc gcagagatgg atctgagtag atgatccgcg aagccattcg
      721 ttgaaacaga tgcgcttctt cggcgtctgt cttcaaatga ctcatctcga cttgcgcttt
      781 ggtccagctc aaacggagct cccgctcaaa aatgctcggg tcgtggtact tgtctgccaa
      841 agccaatgct tcatcacgag acttcgcgac acccgttgta aaagaacagg aaatcgtttg
      901 attaggttcg attaacaaac gtcttcgcag gctgaagacg ggatcgagca cggcgccagt
      961 cgtattcgag agtggtcgat catccatgac cgcaatagga tttgcaggtg tgcgccctcg
     1021 accgaggaaa cgaccacgat cagtttcata ctgaatagcg ccgacgactt cgccttctgc
     1081 gacaaccacg tgaatggccc ataactgagg atcatcgctc gaacgttgac gacgatgcgc
     1141 gaggattgca ttttcagcgg aaaagaattc cgtttcgata aagagattgc taaaggccgg
     1201 gtgtgcggcg tcagcctggg gggatgcgag gacgatctcg cagtagctgg tcagttcgat
     1261 ctcgcgaact cgcgacgaat tgttcgtgag cgacacgcga cgtatctcgg cgttgtcttc
     1321 tgccgacaca accacttcca tgcgagtact gattccggaa tcaacgcggc ggaagtctgc
     1381 tttgtcttcg gaaaacgcaa cgcgatatgc ggtaggccgc tttctgattg gttggtgtcc
     1441 tgctgaccag atctcaccgc tacgcacgtc gcgcaagtaa acgaaagcgc cccagtggtc
     1501 cctggtaacg tcttcacgcc agcgcgtaac agcgtttccg tcacactggg aataacccgc
     1561 accggcagta gtgagcatta cactgtaggc gccgtttgaa agaagttgcg tgcggggcgt
     1621 atcaaggtcc ggcgtatcgt aaactcgcgc gatcattccc tgcggagttt gacttacccg
     1681 accggtcagg acttcttcag cgcgaggatg agccgtcggt acgcgaactg gaattcgttc
     1741 ctggagaagt agctcagttg cctggactgc cggatcagag tgaaatcggt tctccattcg
     1801 atttccttca agcgcattga gaagcgcaac caggctcatt ccctggtgat gcgtcatgaa
     1861 ggctttgatc acgactctat tctgattctc aggcagacgt tcacttgtgt aatcgatcga
     1921 ttcatagaat ccgtagcgac caagtgcccc ttcgcctacg agaaggcgca tattcctcag
     1981 cgcctgcgtg ggatcaattt cagcagcgag cattgttgcg taaggagcga ctaccacatc
     2041 ctcgattagt ccgcgcttta agcccaggcc aggtactcca aacggaccgt actggtaatt
     2101 gagccgtaga tcgcgaacat ggtatgcggc ctctgagata ccccagggca cgccgcgctc
     2161 ttcgccgtat tcgatctgac gctgaacgac cgagtgatag gtttcgtcca gtagcgttcc
     2221 ggcatagttg cgcatgacga ggagtggcat taggtattcg aacattgtgc ctgtccacga
     2281 aatgagcgcg cgtccaccat tgactgtcgt aagcgggcgc cccatgcgga accagtgctc
     2341 ttgtggcaca tcgccctttg cgatcgcgat aaagcttgca agtcgcgctt cggaagccag
     2401 cagatcatag taagagttgt cagcacgaga ggcggtgacg ttgtacccga ttggaaagag
     2461 cttgcgttcc tggtcaaaaa gaaattcgaa gtccatatct tcgacggttt ggtcgcaggc
     2521 tcgggccaga cgactaagtc gtgacagcaa atcgccggcg tttttcgacg aagactcgag
     2581 cgcccgggta agcctggcga gtatttcagt tgagggaccc tcagggtcac tttgtccggc
     2641 gagttgaaca aggacgcggt cacagagtcg tgggacttcc gcaagcgtgg gaacggagct
     2701 aagtatgctg atgatttttt cccagccatt tgtcggctgt ggttcatccg aggttgtttc
     2761 aagtagtgga atcaagcgag tccaaccaca aagcgtatcg atgtcgcgac gccaacattc
     2821 cgcctgatgc agcaatgcac caacccacca gcgtagttcc ttgaaacttt cctcgccatg
     2881 ttcatgagaa agcgcattga cgatgtcgtc gatttcggaa gcgcgccggc acatcgaatc
     2941 gataatgatc agccatgaag taaggctctc cctgctgttg tttaccagga gtttttgaca
     3001 gtcttcgatt tcgttttgta actgacggac agtaaccact tccgttcgtt ggcgaatgct
     3061 atccagtcgt tccgcttcaa ttccgatggc gttgatcgtg tctgatagtc ccgccaccac
     3121 tcgatcatcg aacaaccgca gatcaggtaa ctcgatattc gcttgtttca ccgcgacgag
     3181 atgaccagca aagttcccgc tgtcgacagt cgaaatgtac tccggaagta aaggctcaag
     3241 tgttgtcgtc tcgtaccagt tgaacagatg tccatgtagt tttcccagct tcacgattgt
     3301 tccaaaggtc agttcctgtc gttcgactaa ttcaagtgaa ctgacgtagc cgagatcgcg
     3361 tgctgttgaa gttgcgagca atagcaagcc gatgttagta ggcgacgtgc gatgagcgac
     3421 aactggtgtc gggtcttcct ggaagttatc tggcggcagc caattgtcct gggcagtgac
     3481 aaacgtttcg aagaagcgcc aggtcagacg agcaattgag cgggcgaatt caacgtctcg
     3541 tccgctgagc aattttcgct tcgagacgat tggtttgctc acgaggtagg caatcagtgg
     3601 cgagagcaac cagatgaacg tgggaaagct gagaacagcg agcgcggttg gtctgaatct
     3661 gat
//
LOCUS       DATCGC010001526         1466 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_189949, whole genome shotgun sequence.
ACCESSION   DATCGC010001526 DATCGC010000000
VERSION     DATCGC010001526.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1466)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1466)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1466
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_189949"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..349
                     /locus_tag="VIJ87_14620"
     CDS             <1..349
                     /locus_tag="VIJ87_14620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445670.1"
                     /translation="RTNLFFVDTLRCSYQTGALKFRDHPLTLRNGIKAWPPEWITASG
                     NTTTGEVGILEYMSIGLLIDTTFFLFINYKHSRYVGLMSFDDSISCQKVYDLLKPNTG
                     RSIKEIGGLELEP"
     gene            complement(690..1151)
                     /locus_tag="VIJ87_14625"
     CDS             complement(690..1151)
                     /locus_tag="VIJ87_14625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445671.1"
                     /translation="MKTKKIILSKQIALAIAVSCVLLFLSEAAPEQQEWFNYPAVSRL
                     QGKLTKVTKYGKPTYGENPEKDEKVEVPILILQTPIRAKAQTTSSVNNETLTNVSFVQ
                     LIFPGEVGDYSKHLNMVIVVDGTLEKGLKGDHFADLVMTVKAVNPTAKPIY"
     gene            complement(1159..>1466)
                     /locus_tag="VIJ87_14630"
     CDS             complement(1159..>1466)
                     /locus_tag="VIJ87_14630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445672.1"
                     /translation="CFRREQSLVTRGLKGFLTLVAVVLPIACSPQPQTHPLDTAPIPA
                     SARISEEPCSPLGAMLCGAVSIVSGETAVERRSACIAYVEPSGRRVEQCGSLPLSQP"
BASE COUNT          365 a          363 c          357 g          381 t
ORIGIN      
        1 tcggacaaac ttattttttg ttgacacatt gcggtgctcc tatcaaactg gtgccttgaa
       61 gtttcgcgat catcccctaa ctctcaggaa cggcatcaaa gcttggccac cggaatggat
      121 aacagcatct gggaatacta cgaccggcga agttggaatt cttgaatata tgtcgattgg
      181 tcttttgata gacaccacat tctttctatt tattaactac aagcactctc gatatgtggg
      241 attgatgtct ttcgatgact ctatatcctg ccagaaagtt tatgacctgc tgaaaccgaa
      301 tacaggccgc tcgatcaaag agatcggtgg tctggaactg gaaccttgat tctcgccttg
      361 cgcccggggc tgcgccttct cgcttcctgc aaccgcttct ttccaaacac ccgtcgacca
      421 acaaccgacg tggagccgat cgagaacaca gatatagaga gcagctgaac cgagcacttc
      481 ctaaacggct tgttaatgga cactccaaga ctgtctgcgc ttatatttgt ttgatcctga
      541 gccacaagct caacatgaaa ccgccgaaga ttggagcaag aaattgcgaa tggtcttacg
      601 aaagtttggt gtgccagaga accaatttca tcgagttaaa agtgagtgca atttcgcatg
      661 aacgtcgacc gcgccgcagg cttggcacgt tagtatattg gttttgctgt cggattcacc
      721 gccttcacag tcatcaccaa gtcggcaaaa tgatctcctt taaggccttt ttccagcgtg
      781 ccatccacga cgataaccat gttgagatgt tttgaatagt caccgacttc gccgggaaag
      841 atgagttgta caaacgacac gttggtcaat gtttcattat taacgctgct ggttgtttgg
      901 gccttggccc ggattggcgt ttggagaatt aaaatgggca cttccacttt ctcatccttt
      961 tccgggttct cgccgtaggt cggcttgccg tacttcgtga ctttggtgag tttcccttga
     1021 agtcttgaga ccgctggata gttaaaccat tcctgttgtt caggtgctgc ttcggacaaa
     1081 aataacagga cgcaactaac agcaatggct agcgcaatct gcttagacaa tattattttc
     1141 tttgttttca cggcggcgtt agggctgcga caaaggaagc gaaccgcact gctcaacgcg
     1201 ccttccacta ggttctacat aggcaatgca ggctgaccgg cgttcgacag cggtttcacc
     1261 agatactatc gagacagcac cgcacagcat agcgccaagc ggtgaacacg gctcttccga
     1321 tatgcgagca ctagcgggta tcggcgccgt atcgagagga tgagtttggg gctgaggcga
     1381 gcacgcaatc gggagaacaa ctgccacaag cgtgagaaaa cctttaagtc cgcgcgtcac
     1441 tagagattgt tctcgtcgga aacaat
//
LOCUS       DATCGC010001527         1073 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_387261, whole genome shotgun sequence.
ACCESSION   DATCGC010001527 DATCGC010000000
VERSION     DATCGC010001527.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1073)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1073)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1073
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_387261"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..858
                     /locus_tag="VIJ87_14635"
     CDS             <1..858
                     /locus_tag="VIJ87_14635"
                     /inference="COORDINATES: protein motif:HMM:NF012385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HEY5445673.1"
                     /translation="RRSARKDGPFVAINCNAIPETLLESELFGHEKGAFTGAHVQRKG
                     LLETASGGTLFLDEIGELPPPIQVKLLRFLQEQRLQRVGGRQEIQVDTRLVAATNADL
                     KELINTGKFREDLYFRLAVVTIRLLPLRERGEDIAFLAREFLQKYANQSGQTKMVFAP
                     DALRAMSSYSWPGNVRELQNRVKRGVIMASGSRLSAKDLELERDRVVASSAATTLRQA
                     REHVEREMVEQALKKNSGKITSAAADLGISRPTLYELMEKLGIARERANTNVDKHQNN
                     PRYANIDSI"
     gene            836..>1073
                     /locus_tag="VIJ87_14640"
     CDS             836..>1073
                     /locus_tag="VIJ87_14640"
                     /inference="COORDINATES: protein motif:HMM:NF024806.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5445674.1"
                     /translation="MQTSTLFRIATLTLAATALVACSKEGKKTRFLAEADNYFKTGDY
                     DKAKVSYLNVVRLDPQNALAFERIGAMWLDGGSPL"
BASE COUNT          275 a          281 c          286 g          231 t
ORIGIN      
        1 cgtcgcagcg cgcgtaagga tggtcctttt gtcgctatca actgcaacgc tattcccgag
       61 actcttttgg agagcgagct gttcggtcac gaaaaaggcg cctttacagg cgctcatgtt
      121 caacgcaagg gactcctgga aacagccagt ggcggcaccc tgttcttgga tgagattggt
      181 gagcttcccc cacccatcca ggtgaagctt ctccggttcc ttcaggaaca acgcttgcaa
      241 agggtaggcg gaagacaaga gattcaggtc gatacccggc ttgtagccgc taccaacgct
      301 gatctgaaag aattgatcaa caccggtaaa tttcgtgaag atctgtattt tcgtcttgcc
      361 gttgtcacta tccgcctgct gccgcttcgt gagcgtgggg aagacatcgc gttcctggcc
      421 cgcgagttcc tacaaaagta tgctaaccaa agcggtcaga ccaagatggt ctttgcgcct
      481 gacgcgttgc gtgcgatgag ctcttattca tggcccggaa atgtccgcga actccaaaat
      541 cgtgtgaaac ggggcgtcat tatggccagc ggatcgcgac tgagtgcaaa agaccttgag
      601 ttggaacggg atcgggtagt ggcgtcttca gctgcaacga ctctgcgaca agcacgcgag
      661 cacgtcgagc gggaaatggt tgaacaggcg cttaagaaga actctggaaa aatcacctct
      721 gcagctgctg acctcggaat tagccgacca actctttacg aattaatgga aaaacttggc
      781 attgcgagag agcgcgcaaa cacaaacgtc gacaaacatc aaaacaaccc tcgatatgca
      841 aacatcgact ctatttagaa ttgcaacgct tactcttgcg gctacagcac tcgtcgcctg
      901 ctccaaggaa ggcaagaaga cacgctttct cgccgaggct gacaactatt tcaaaaccgg
      961 cgattacgat aaagccaaag ttagctatct gaacgtggtg cggctggacc cgcaaaacgc
     1021 gctggcattc gaaagaatcg gggcgatgtg gctggacgga ggatcacctc ttc
//
LOCUS       DATCGC010001528         1308 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_355572, whole genome shotgun sequence.
ACCESSION   DATCGC010001528 DATCGC010000000
VERSION     DATCGC010001528.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1308)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1308)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1308
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_355572"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1232
                     /locus_tag="VIJ87_14645"
     CDS             <1..1232
                     /locus_tag="VIJ87_14645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445675.1"
                     /translation="DSTSNLNSDQVAAQLAERTKAFTETQLGLAYLSVATGGLAIRNN
                     NDLNLGIKQILDDQQGYYLIGYRPDDATFATVAGKSKFHHISLRIKREGSYSVRTRNS
                     FYGRTDEVAQPNLTPKQQLEDALTSPFTSSEIQVKLTSIFANTNTNGSLLQSFLHVKA
                     SDLTFATEPDGSRKASFNIAAVTFGDNGRVLDQFGYPVSITVPASDLERINKNGFVYT
                     VALPIKEPGAYQLRLAIRDEATQRIGSAMQFVEVPDLKKNKLTVSGILLSGLPLAKYL
                     KGSSGPSAAEKLEGANLEADPDANPAVRLFKGDVALIYAFNIYNARVDKKTGKAQLKT
                     QLKLYRDGKLIFTGNEVAFTPVDETDPKRLLGAGVVQMKSGMTPGGYVIQIVVTDLLE
                     KGRDQVASQWVDFDVVN"
BASE COUNT          364 a          345 c          311 g          288 t
ORIGIN      
        1 gagactcaac ctcaaactta aacagcgacc aagttgcagc acagctcgcg gagaggacga
       61 aggctttcac tgagacgcag ctaggcctgg cgtatctttc cgtcgcaacg ggtggtcttg
      121 ccattcgcaa caataacgac ctcaacttgg gtattaagca aatactcgac gaccagcaag
      181 gctactacct gatcggatac cggcctgacg atgctacgtt tgcgacagtt gctggtaagt
      241 caaagtttca tcacataagt ctgaggatca agcgtgaagg aagttattcc gttcgaacca
      301 ggaatagctt ctatggacgc acagacgaag tcgctcaacc aaaccttacc cccaaacaac
      361 aattggaaga tgcattgact tcaccattca cctcttcgga gattcaagtc aaactcacat
      421 ccatattcgc caacaccaat acaaacggat ctctgctcca atcatttctt cacgttaaag
      481 cgagcgatct aaccttcgca acagaacctg acggttcgcg caaggcttcg ttcaatattg
      541 cggcggtcac cttcggcgac aacggaagag ttctggatca gttcggttat ccagtgagca
      601 ttactgtccc ggccagtgat cttgaacgga tcaataagaa cggttttgtt tacacagtgg
      661 cactaccgat taaggagcct ggcgcctatc aactgcgatt ggcgatacgc gacgaggcca
      721 cccaacgcat cggttcggca atgcaatttg tcgaagtgcc agaccttaaa aagaacaaac
      781 taactgtttc gggaattctg ttgagtggtc tcccgctggc caagtatttg aagggttcgt
      841 ccggtccatc agcagcagaa aaactcgagg gcgctaacct cgaagctgat ccagatgcaa
      901 accctgccgt tcgactcttc aaaggtgacg tggcgttaat ctatgccttc aatatttaca
      961 acgcccgcgt cgataagaag accggcaaag cccaactaaa aacgcagctc aaactctatc
     1021 gcgatggcaa gttaatcttc acaggtaacg aagtcgcatt cacgccagtg gatgaaactg
     1081 atccaaaacg gttgctcggt gccggcgtag tgcaaatgaa atccggaatg acaccaggtg
     1141 gatatgtgat ccagattgta gttaccgacc tactcgaaaa aggaagagat caggttgcgt
     1201 cacagtgggt cgacttcgat gtcgtcaact agttcatggg cacgtggcag tagcccgact
     1261 gtcaaggagg gctcccgacc aaacatcgtc gactacgctg agccctcc
//
LOCUS       DATCGC010001529         1827 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_287620, whole genome shotgun sequence.
ACCESSION   DATCGC010001529 DATCGC010000000
VERSION     DATCGC010001529.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1827)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1827)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1827
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287620"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(212..541)
                     /locus_tag="VIJ87_14650"
     CDS             complement(212..541)
                     /locus_tag="VIJ87_14650"
                     /inference="COORDINATES: protein motif:HMM:NF015289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EutN/CcmL family microcompartment protein"
                     /protein_id="HEY5445676.1"
                     /translation="MFLAKVVGTVWSTKKTPDLEGVRFLIVHPYDLDKEPTRNIVVVA
                     DRLGAGTGEMVMCAYGKAARTAIGNQDMSIEAAVVGIVDRVDITDSTSHEMVEAARRL
                     AQENGKF"
     gene            complement(610..>1827)
                     /locus_tag="VIJ87_14655"
     CDS             complement(610..>1827)
                     /locus_tag="VIJ87_14655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445677.1"
                     /translation="LVRAAYSSGKPAFGVGPGNVPVYIERTADVAKAVQDILTGKCFD
                     NGTICASEQAVVCDAPVEQAVREQFKAQGAHFLSASEAEQLAKVVATPQRSLNPGIVG
                     KSVDVIAKMAGLNVPAGTRCLLANVAGVGREHPLSMEKLSPILAFYVADGLTACVKLS
                     QQILGYGGMGHTAGIHTRSREAAVQFGADMPASRITVNTPTTHGAIGFSTALPPSMTL
                     GCGSWGGNVTSDNVGPLHLMDIKRVAFETRPVKSARPAVGTQKVSSTQPVHVAEPAVA
                     GGKINRQEIAAIVDRFLAGKGVENAPAPSPLPKPPITPEAGSMYSGPASTPETRPQAS
                     NGGNRSSDRPSAPSLPRQAPAANGGKAVDFVSEDDVRRAIQKGEKIYVTPKTIITPAA
                     RDMGEPAEVFAKV"
BASE COUNT          412 a          510 c          442 g          463 t
ORIGIN      
        1 tatcggttac taactgctcg atcgtctgtt catcagcggc cgagcccacg cgatcataaa
       61 ccgcacgcgt gatccgatag atcaaatctt catttgccat tgaaagaatg tttagggaga
      121 tgagtgtttt ggggtggtca aggtttgttc agtggtcagt ggctagtagc ttcaacggtc
      181 aatctgaaat cttcaatttg aaatttgaga tctaaaactt tccattctcc tgtgcgagtc
      241 gtcttgccgc ttcaaccatc tcatgtgagg ttgaatcagt gatgtcaacc cgatcaacta
      301 ttccgacgac ggcagcttcg atcgacatgt cctggtttcc aatggccgtt cgcgccgcct
      361 ttccgtaagc gcacataacc atctcacccg ttccggcacc gagacgatcc gctaccacaa
      421 caatgttccg cgtcggctct ttgtcgagat cgtacgggtg cacaatcagg aacctgacgc
      481 cttcgagatc aggagtcttc ttcgttgacc aaactgtgcc gactactttt gctaagaaca
      541 ttggaattgg cttttgttct ttggtttttg gtctttggat ttctctaagg ccaaagtcca
      601 aagaccattt caaactttcg caaacacctc agccggttcc cccatatctc tggctgccgg
      661 tgtgataatt gttttgggag tgacgtagat cttctcgccc ttttgaatcg cgcgacgcac
      721 gtcgtcctcg ctaacgaaat caactgcttt gcccccatta gcggccggtg cctgccttgg
      781 caacgatgga gcgctaggtc gatcgctaga tcgattgcca ccattactcg cttgcggtct
      841 ggtctcagga gttgatgctg gaccgctgta catactgcca gcctcgggtg ttatcggagg
      901 tttcggcaaa ggcgatggag cgggtgcatt ttcaacaccc ttgcctgcta aaaaacgatc
      961 cacgattgcc gcaatctcct gccgattaat tttgccacct gcaaccgctg gctctgcgac
     1021 gtgaactggt tgagtactcg agaccttttg cgttccgacc gcaggtcggg cgctcttcac
     1081 tggcctggtt tcaaatgcca ctcgcttgat atccatcagg tgaagtggcc caacattgtc
     1141 ggaggtgaca ttgcctcccc acgaaccaca accaagagtc atcgaaggag gtagcgcagt
     1201 tgaaaagcca atcgcgccgt gggtagttgg tgtatttacc gttatgcgcg aggccggcat
     1261 gtcagcgcca aattgcactg ctgcctctcg cgatcgagtg tgaattccag ccgtgtggcc
     1321 cattccacca tagccgagaa tctgctgact cagcttcacg cacgctgtta agccatctgc
     1381 aacatagaaa gcaagaatcg gggacaactt ttccatcgac agcgggtgct cacgtccgac
     1441 accagcaaca ttcgccaata gacaacgcgt tccagctgga acgtttagac ctgccatctt
     1501 cgcaatcacg tcaacggact tccctacaat gcctggatta agtgaacgct gcggagtcgc
     1561 tacaacctta gccagttgct cagcctcaga cgcggataga aaatgtgcgc cctgagcttt
     1621 gaactgttct ctgactgcct gttcgactgg tgcgtcgcaa acaacagctt gctcagatgc
     1681 acaaatggtc ccgttatcaa aacacttgcc ggtcaaaata tcttgcaccg ctttcgcgac
     1741 gtcggcagtt cgctcaatat aaacgggaac atttcccggg ccgactccaa atgccggttt
     1801 acccgacgaa tacgcagcac gaacgag
//
LOCUS       DATCGC010001530         1060 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_55894, whole genome shotgun sequence.
ACCESSION   DATCGC010001530 DATCGC010000000
VERSION     DATCGC010001530.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1060)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1060)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1060
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55894"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(146..715)
                     /locus_tag="VIJ87_14660"
     CDS             complement(146..715)
                     /locus_tag="VIJ87_14660"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY5445678.1"
                     /translation="MPPTQQSDVTRLLVDWQSGDEFALDRLMPLVYRELRKVAARYLR
                     DERREHTLEPTELIHESYLRMVGQSMPEWQNRAHFYGVAARLMRQILVDHARQRHASK
                     RGGEQTRISLDHAAPSALCNDAERVLTLDAALTKLAALDERKSRAFEMRVFGGMKLSD
                     IAIALEVSEPTIKRDLRMVKAWLRVEVGS"
BASE COUNT          244 a          280 c          285 g          251 t
ORIGIN      
        1 gcgctcttct gggaccccag ccgaggacgc cggctgaggt tctggacaag cttgaaacgt
       61 tgcaagcagg cgaggagcct gcggtcccag aagagcgcgc ccgttggttt ggaagggtta
      121 ctgaagggga tcgactgaca aaagctcaac ttccaacttc aacccgcagc catgctttaa
      181 ccatacggag gtcgcgcttg atagtaggtt cagagacttc cagggcaatt gcgatatctg
      241 aaagtttcat tccaccaaag acgcgcatct cgaaagctcg tgatttacgc tcgtcaagag
      301 cggcgagttt tgtgagagcc gcatcaagcg tgagaactcg ttctgcgtca ttgcatagag
      361 ccgaaggtgc tgcgtggtca agtgagatac gggtttgttc accgccgcgc tttgaagcat
      421 gacgctgtcg agcatgatcg acgagtattt gtctcatcag gcgggctgcc acaccgtaga
      481 agtgcgcacg gttttgccac tcgggcatgc tttgcccaac cattcgcagg tagctttcat
      541 gaatcaactc cgtaggctcg agagtgtgct cgcgcctttc gtctctgagg tatctggctg
      601 caaccttccg tagctctcga taaacgagtg gcatcaacct atccagggca aactcgtcgc
      661 cgctttgcca atcgacaagc agtcgagtca catcggattg ttgagtcgga ggcattgccg
      721 gtcctcgatg cagaacggga tgggccagat tatagcaacc agtcataagt tgatctccga
      781 tctcagactt cagatctcag agggacgttg gaagccgtac ttactcggac catgcgttac
      841 gcaataaatg gactcgttag gccgttttga tctgagatca taaatttgcg atctgagatc
      901 aacaacgact taccgcagga gcaccccttc aatccactcc tgcggttgcg ttgtgtctgg
      961 ggagaaaatt cctcccctaa cagaatgcga ttgaaacagt ctcgactcgc tttctggcct
     1021 ttggactcaa actctccagg gtctcaagca ccttcggatg
//
LOCUS       DATCGC010001531         1378 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_121673, whole genome shotgun sequence.
ACCESSION   DATCGC010001531 DATCGC010000000
VERSION     DATCGC010001531.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1378)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1378)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1378
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121673"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..378)
                     /locus_tag="VIJ87_14665"
     CDS             complement(<1..378)
                     /locus_tag="VIJ87_14665"
                     /inference="COORDINATES: protein motif:HMM:NF013942.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445679.1"
                     /translation="MVPKKLRVGVIFGGRSGEHEVSVRSARAIIEAIDQKKFEVVPIA
                     IGKDGKWLGPSQSTQLLPPAVHRLLRSKPGDDPGDVALLGDPSHKGLISLRPQASSAV
                     AEKLDVVFPALHGPSGEDGTLQGL"
     gene            complement(390..1352)
                     /gene="rocF"
                     /locus_tag="VIJ87_14670"
     CDS             complement(390..1352)
                     /gene="rocF"
                     /locus_tag="VIJ87_14670"
                     /EC_number="3.5.3.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004053 - arginase activity [Evidence
                     IEA];
                     GO_process: GO:0019547 - arginine catabolic process to
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginase"
                     /protein_id="HEY5445680.1"
                     /translation="MSSVANKPKSSAETTAATRKAIGILGVPLGYGASMAGVDMGPAA
                     LRVARLKQRIKALGYSVRDLGDLRVETPEVVPEEDDKLKYLPQISTACEQLATRVEEI
                     LEAGELPLILGGDHSIAIGSYAGVASYYRKKHETLGLIWFDAHADMNTPETTPSGNIH
                     GMPLAALLGFGTSELTNIAGFSPKLDPRLCAHVGARDIDSGERELIRKLGMRFFTMRE
                     IDERGMAACMDDAIAIASGGSAGYSVTFDVDALDPGDAPGSGTLVRGGLTYREAHLGM
                     EKIAEHGGMLSLEVVEINTALDFNNKTAELGVELILSAFGKTIL"
BASE COUNT          324 a          378 c          335 g          341 t
ORIGIN      
        1 aagaccctgg agtgttccat cttcgccaga tggaccgtga agggcgggaa agacgacatc
       61 aagtttttcg gctactgctg acgaggcctg cggtcgcaaa gaaataagcc ctttgtgcga
      121 tgggtctccc aacagtgcca catccccagg gtcatcaccc ggcttggatc tcaacagccg
      181 atgcactgca ggcggtaata gctgagttga ttgcgatggt cctagccact tcccgtcttt
      241 tccaatagcg atcggcacta cctcaaactt tttttgatca atcgcctcga taatggcacg
      301 cgctgaacga accgaaactt catgctcgcc tgatcgacca ccaaagataa cgcccacgcg
      361 aagtttttta ggcaccatgt ctcctgcgac taaagaattg tcttgccaaa ggctgataag
      421 attagctcaa cgccaagctc tgcggttttg ttgttgaaat cgagagcagt gttgatttca
      481 actacctcta gagaaagcat accgccgtgt tcagcaattt tctccatgcc tagatgagcc
      541 tcccgataag tcagcccacc tcgaacaagg gttccagaac caggtgcatc accaggatca
      601 agagcatcca cgtcgaatgt aacgctataa cctgcactgc ctcccgatgc aatcgcaata
      661 gcatcgtcca tgcacgctgc catccctcgc tcatcaattt cgcgcatggt aaagaagcgc
      721 atgcccagtt ttcttatcaa ctcccgctcg ccggaatcga tatctcgcgc cccaacatgt
      781 gcacacagcc ggggatcaag ttttggactg aagcctgcga tgtttgtgag ttcgctcgtt
      841 ccgaagccga gcaatgctgc gagaggcatt ccgtgaatgt ttcctgacgg agtggtctca
      901 ggtgtattca tgtctgcatg agcatcgaac cagatcaggc caagcgtttc gtgtttcttg
      961 cgatagtagg aagcaacacc ggcgtaggac ccgattgcaa tggaatgatc gccgccaaga
     1021 atcagtggaa gttcaccagc ttccagtatc tcttcaacac gagttgctaa ttgttcacac
     1081 gcagtgctga tttgtgggag gtacttaagt ttgtcgtctt cttcgggaac tacttcagga
     1141 gtttcaaccc tcaagtcgcc aagatcgcga acactgtacc ctagcgcttt gatgcgttgt
     1201 ttaagacgcg ctacacgaag tgcggccggg cccatatcca cgccggccat gcttgcgcca
     1261 tagcccagtg gaacgccgag aatgccgatt gcttttcttg ttgctgctgt tgtctcggcg
     1321 ctgctttttg gtttgtttgc cactgacgac attgagaact aaccaccgag attaaggt
//
LOCUS       DATCGC010001532         1536 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_89475, whole genome shotgun sequence.
ACCESSION   DATCGC010001532 DATCGC010000000
VERSION     DATCGC010001532.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1536
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89475"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            234..>1536
                     /locus_tag="VIJ87_14675"
     rRNA            234..>1536
                     /locus_tag="VIJ87_14675"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          407 a          356 c          468 g          305 t
ORIGIN      
        1 agcgcctggt ttgcaaccag gaggtcaccg gttcgatccc ggtattctcc accaacatga
       61 ctttctcgcg cggaccatgt gcgcggaacg ttctttgaca actgaatatc ctgcaaacgg
      121 tagttttttc ggaaccacaa attacaagca gtgttttaga gggagtgaag aggtacagac
      181 gaatgcacca gaacgcaaaa ggctggtgcc gacacgtgtg tatcaattcc aatgttcaag
      241 ctactaaggg cgtacggtga atgccttggc gctagaagtc gatgaaggac gcgataagct
      301 gcgataagcc tcggggagcc gcaaataggc tttgatccgg ggatttccga atggggaaac
      361 ccctggaggg ttatgcctcc agatccaccg ctgaattcat aggcggtgag aaggcaacgc
      421 ggggaagtga accatctcag tacccgcagg aagagaaaac aacagtgatt ccgctagtag
      481 cggcgagcga acgcggaaaa gcccaaactt tggtgcgtgc atcaaggggt tgtagggcct
      541 gttagaccgt aaggtcgaag agtcacaaac caacacatta gtcgaacgac ttggaacggt
      601 cggtcataga gggtgagaac cccgtagacg aaaccgcact ggctcgctgg acaggttcct
      661 gagtaccacg ggacacgtga aatcccgtgg gaagctgcga ggaccatctc gcaaggctaa
      721 atactctcta gcgaccgata gtgaaccagt accgtgaggg aaaggtgaaa agcacccctg
      781 tgaggggagt gaaaaagtac ctgaaaccgt gtgcctacaa gcagtgggag ggctatgcct
      841 ggacttcggt ccgggaaggc ctgaccgcgt gccttttgca taatgagccg gctagttttt
      901 ctcagtggcg aggttaagcg taagcgagcc gtagcgaaag cgagtcctaa tcgggcgaca
      961 agtcgctgga aaaagacgcg aagcgaggtg atctatcctt ggccagggtg aagcgcgggt
     1021 aacaccgcgt ggaggcccga actggtgttc gttgaaaaga gctcggatga gctgaggata
     1081 ggggtgaaag gctaatcaaa cttcgtgatt gcccgttctc ttcgaaatgc ttttaggagc
     1141 agcctcggat ggtcggcatt ggtggtagag cgctggatgg actaggggcc ttaccaggtt
     1201 actgaatcca accaaacttc gaatgccaat gaccgcaatc cgggagtgag acagtggggg
     1261 ctaagcttca ttgtcgagag ggaaacagcc cagacgaccg gctaaggtcc ctaacttcgt
     1321 gctaagtggt aaaggatctg aagatgctgt gacaaccagg aggttggctt agaagcagcc
     1381 atcctttaaa gaaagcgtaa tagctcactg gtcaagcgtc tttgggccga caatataacg
     1441 gggctcaagc acaccaccga agccgtagaa tgcatcgccc tgcggggtga tgttttggta
     1501 gaggagcgtt ctcttcagcc gtgaagccag atcgaa
//
LOCUS       DATCGC010001533         1345 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_287702, whole genome shotgun sequence.
ACCESSION   DATCGC010001533 DATCGC010000000
VERSION     DATCGC010001533.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1345)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1345)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1345
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287702"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..366)
                     /locus_tag="VIJ87_14680"
     CDS             complement(<1..366)
                     /locus_tag="VIJ87_14680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445681.1"
                     /translation="MANDDRDILEVLKDELVFIEKGGYVRSVHTPWKLNSTFQESATC
                     LNYGYPYRAHPCSECHLLDFVAPEHRSEMVPCHHITLDAEGDTIKDLEADDNESRLAR
                     KVSDWLRTKIKELEEERTTQ"
     gene            complement(401..673)
                     /locus_tag="VIJ87_14685"
     CDS             complement(401..673)
                     /locus_tag="VIJ87_14685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445682.1"
                     /translation="MTTLQPSFNPNTQPANGPTSFMTERNEHEVRCGMCAREVYVDDE
                     TYRFGSDAMNSGLDNPFRCEVCIDEYDDLNYEVESLCSLSQTSRDQ"
BASE COUNT          316 a          336 c          331 g          362 t
ORIGIN      
        1 ttgtgtcgtg cgctcttcct ctaactcttt aatcttggtc cggagccagt cactaacttt
       61 gcgcgctaac cttgactcat tatcgtcagc ttcaaggtct ttaatggtgt cgccctcagc
      121 gtccagggtg atgtgatgac acggcaccat ctcagagcga tgctcgggcg caacaaaatc
      181 gagtaggtga cactcactgc aaggatgagc gcggtaaggg tagccataat ttagacaggt
      241 cgcggattcc tggaaggttg aattcagctt ccatggagtg tggaccgaac gaacgtatcc
      301 gcccttctca atgaacacga gttcatcttt gagcacttcg agaatatcgc gatcgtcatt
      361 tgccatcgta tcaacctccc atcctccctg ttattgtgga ctactgatcc cgagacgttt
      421 gcgaaagtga acagagtgat tcaacttcgt agttgagatc gtcgtactca tcaatgcaca
      481 cctcacaacg aaacggattg tctaagccgg aattcatggc atcgcttccg aagcgatagg
      541 tttcgtcatc cacatacact tctcttgcgc acatgccaca gcggacctcg tgttcatttc
      601 gctcggtcat gaacgaagtt ggaccgttag ccggctgcgt gtttggatta aaactgggtt
      661 gcaatgtagt catgggttgt ctctttcgct tagaagtctt aacgaaccgt tcaaccgtag
      721 agatggcaat gatcgtgcct tgctgaatga tttggcattg cgaagatctg ttcggagaac
      781 cggctctcaa cggctggaat atcgagctga gacatgggaa attccccaaa ggatctggaa
      841 gtttacgcag taggtaggaa gttcctcgca gggaattggt cgggcttctt tcctttcgag
      901 taggcgttat ggtggggata gtgctggctt ctagtccaca aacaaccagt cagtctgatg
      961 cttaacgaaa aagtgaagag gcgagagtct gagttcgaac gaactccaaa caactctcgc
     1021 ctcttatttc cgaatcaccg ctccaccaac cacgtacaat tcttcaatcc actcgcaccg
     1081 gaactagatg cgattcagtg ctgccgggaa actggaactc tgttagctct tctagccccg
     1141 aggcggtttt cctgcttctc acggtaaagt ggctagcctt gtttcgttct tgtggtttgc
     1201 aatgaaaaga aataacaagg ttttctcgta cttcggcgtt gcctttgtaa acgtacgtgc
     1261 acgcatctcc gcgcgccatt gccatgtcat catggacgaa aaggtaattg cccatcagcg
     1321 tttctcccat gaggttgact ggctg
//
LOCUS       DATCGC010001534         1506 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_355750, whole genome shotgun sequence.
ACCESSION   DATCGC010001534 DATCGC010000000
VERSION     DATCGC010001534.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1506
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_355750"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1349
                     /locus_tag="VIJ87_14690"
     CDS             <1..1349
                     /locus_tag="VIJ87_14690"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEY5445683.1"
                     /translation="IFKTEQRFSGLTFGEKDGLALVSDFERDKRWVRTFMLTLDKPGS
                     TPKLVWSRNQQDRYNDPGTPVMRLQSGGQRAILQTGDSIYLLGTGSSPDGDRPFLDRF
                     NLQTLKAERIFRSENNCYESVVGLLNDDAKQFVTRRESPTDAPNYFVRNAGETSAIPS
                     KALTHYPDPTPQLRGISKQLVTYKRADGVQCSFTLYLPPGYKQGTRLPTVVWAYPLEF
                     NDANTAGQVTGSTQRATQITGMSHLFFLMEGYAILDNTTMPVVGTPETVNNTFVEQIV
                     MSAKAAIDKATELGVTDPDRVGVGGHSYGAFMTANLLAHSDLFRAGIARSGAYNRTLT
                     PFGFQNERRTIWEAPDLYLKVSPFMYAEKINEPLLMTHGEADDNTGTFPIQSERMYQA
                     LKGQGATVRLVMLPFEAHGYTGRESIEHVLYEMISWFDKYVKNAPPRDKRSTQNEQ"
BASE COUNT          376 a          385 c          406 g          339 t
ORIGIN      
        1 agatcttcaa gaccgaacag cgcttctctg gattgacgtt tggtgagaag gacggcctgg
       61 cgctcgtctc tgattttgag cgtgacaaac gctgggtgcg gacgttcatg ctgacgctcg
      121 acaagcccgg ctcaacacca aagctagtct ggagtcggaa tcaacaggat cgttacaacg
      181 atccgggtac acctgttatg cgtcttcagt ctggtggcca acgcgcgatc cttcaaaccg
      241 gtgactcgat ctacctactt ggcaccggtt cttctccaga tggcgaccgt ccgttcctcg
      301 atcgattcaa tctgcaaaca ctgaaagccg agcgaatttt ccgtagtgaa aacaattgct
      361 acgaatccgt tgtcggattg ttgaatgacg atgcgaaaca gtttgttacc agacgtgaat
      421 cgcccactga tgcgccaaac tatttcgtga gaaatgcagg tgagacttcg gcgattccat
      481 caaaggcgtt gacacactat ccggatccca cgccacaact tcgcggcatc agcaagcagt
      541 tggtcaccta caaacgcgcc gacggcgtgc agtgttcgtt tacgttgtat ttgcctcccg
      601 gatataaaca aggaactcgt ctgcccacgg tcgtctgggc atacccgctt gagttcaacg
      661 acgcaaatac agcaggacaa gttacgggct cgacgcaacg agcaacccaa atcaccggga
      721 tgtctcactt gtttttcttg atggaaggct atgcgattct cgacaacaca actatgccgg
      781 ttgttggaac accggaaacg gtcaacaaca ctttcgttga acagattgtg atgagcgcta
      841 aagcggcaat cgataaggcg acagagctgg gggtgactga tccggatcga gttggtgtcg
      901 gtggtcacag ttatggtgcc ttcatgacag cgaatctgct ggcgcattcc gatttattca
      961 gagccggaat cgctcgcagt ggagcctaca atcgaacgct cacgccgttt ggttttcaga
     1021 acgagcgccg aacgatctgg gaggcgcctg atctctattt gaaggtgtcg ccgttcatgt
     1081 acgcggagaa gatcaacgaa ccgttactaa tgactcacgg cgaagcagat gacaatactg
     1141 gaacgtttcc tattcaatcc gagcgcatgt accaggcgtt gaaagggcag ggagcgacgg
     1201 tacgtttggt gatgctgcct ttcgaggcgc acggttacac cggacgcgaa agtatcgagc
     1261 atgtgttgta cgagatgatc agctggtttg ataagtatgt gaagaacgcg ccgccgaggg
     1321 ataagcgatc aacgcagaat gaacagtagg cagaaggcag ctgatccact ttagtgacgc
     1381 cgatcgaact aatggacgcc tgcggtccca gaagagggcg tccgttattg ccgggtagct
     1441 acaaagggta ccggttctgc tgtaaccaca tgagagcctc actctcaaaa cctaatcacc
     1501 tcactc
//
LOCUS       DATCGC010001535         1053 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_254501, whole genome shotgun sequence.
ACCESSION   DATCGC010001535 DATCGC010000000
VERSION     DATCGC010001535.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1053
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_254501"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..486
                     /locus_tag="VIJ87_14695"
     CDS             <1..486
                     /locus_tag="VIJ87_14695"
                     /inference="COORDINATES: protein motif:HMM:TIGR02999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY5445684.1"
                     /translation="AVYQELRRMANYYLRGENAGHSLQPTALVHEAYLRLIDQTKVDW
                     QNRAHFFGVAAQMMRRILVDHAKAKHRAKRGGTATKVSLDETVNLSDERAAELVALDD
                     ALKVLDELDERKSRIVELRYFGGLTVDETAQVLGVSDKTVMRDWSLAKAWLYQQLSQT
                     N"
     gene            682..>1053
                     /locus_tag="VIJ87_14700"
     CDS             682..>1053
                     /locus_tag="VIJ87_14700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445685.1"
                     /translation="MNRERWQQINAIFNEAIACEPRSRASFLTEACHGDSTLQDEVEH
                     LLTAFEAAGSFLETPAAESLDLDNKPKRTPALTAGQQLAHYQIVAELGSGGMGEVYLA
                     NDLTLDRPVAIKILPSQFTQSV"
BASE COUNT          278 a          273 c          284 g          218 t
ORIGIN      
        1 gccgtctacc aggagctgcg gcggatggca aactactatt tgcgcggaga gaacgccggg
       61 cactcgctcc agccaaccgc gctggttcac gaagcttatc tgcgactgat cgaccagacg
      121 aaggttgatt ggcaaaaccg cgctcatttc tttggcgttg ccgcacagat gatgaggcgc
      181 atactggtgg accacgctaa agccaagcat cgcgcgaagc gcggtggaac ggcgaccaaa
      241 gtgtcacttg atgaaaccgt gaatcttagt gacgagcgcg cggccgagtt ggtcgccctc
      301 gatgacgcgc tcaaagttct agacgagctg gacgagcgga agagccgaat cgtggaacta
      361 cgctactttg gtgggctaac cgttgatgaa acagctcagg ttctcggtgt gtcggacaaa
      421 actgtaatgc gtgactggag cctggctaag gcctggttat atcagcaact ctctcagacc
      481 aattaatcta aggtactgct gaataagaaa aggacctcgt gttgtttggt gtgacgcacg
      541 tggatcgttt cttccgccgc aaagaacaat cgaagtcaca cgaacaaaca cgaacgaaat
      601 ctctacttat tcagagctta cttaagagtg gggacaaagg accgagccag agctgtaatg
      661 tgaagaagaa tcgacaactc gatgaatcgc gaacgctggc aacaaatcaa tgcgatcttc
      721 aacgaggcaa tcgcctgcga accccgttcg cgtgcgtcgt tccttaccga agcatgccac
      781 ggcgacagca ctctgcaaga cgaagtcgaa catttgctta ccgcatttga ggcagctggt
      841 agttttctag agacgccagc agccgagagt cttgacttgg ataacaaacc caagcgaact
      901 ccagctctca cggccggaca acaactcgct cattaccaga tcgttgcaga gttaggcagc
      961 ggaggcatgg gtgaagttta cctggcaaat gatttgacgc tagaccgccc ggtcgccatc
     1021 aaaatacttc cgtctcagtt cactcaaagt gtt
//
LOCUS       DATCGC010001536         1079 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_355766, whole genome shotgun sequence.
ACCESSION   DATCGC010001536 DATCGC010000000
VERSION     DATCGC010001536.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1079)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1079)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1079
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_355766"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            62..>1079
                     /locus_tag="VIJ87_14705"
     CDS             62..>1079
                     /locus_tag="VIJ87_14705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445686.1"
                     /translation="MGRVWSIDAVAKNSSTAFFGNGSALAESQKKEGLIYVGTDDGLI
                     QVTEDAGKNWRKVDKLAGIPELGYVTRIVTSNHDANTAYASFDNHQNADFKPYLLKTT
                     DAGRTWTSISNNLPANGPVFAIAEDHVNPNLLFVGTEFGLFFSVDAGQKWIQLKGGLP
                     TIAVRDLNIQKRENDLVVATFGRGVYILDNYTPLRTIKADALKQESILFPVKDALMYI
                     QSQPLGGRGKSFQGETFFTADNPPFGATFTWYLKDALKTRKEKRQETEKEAERKKEPA
                     GWPSQTELRAEDEEEAPAIVVTITDSSDRVVRRLTGPVAAGIQRLTWDLRYPAANLSA
                     PPPPD"
BASE COUNT          285 a          259 c          290 g          245 t
ORIGIN      
        1 cacctggcaa gtaattagcg ggcaactttc tcgggcactt gatcgagaca agctggccgt
       61 aatgggacgc gtttggagta ttgatgcagt cgccaagaac tcctcgaccg cgttctttgg
      121 caacggctct gcgcttgccg agtcacaaaa gaaagaaggg ttgatttacg tcggcactga
      181 tgacggtttg attcaggtga cggaagatgc ggggaagaac tggcgcaagg ttgataaatt
      241 agcgggtata cctgagttgg gttacgtcac gcgcattgtt acatccaacc acgatgcgaa
      301 tacggcatat gccagtttcg acaatcatca aaatgcagac ttcaaaccgt atttgctgaa
      361 gaccactgat gccggacgaa cgtggacgtc gatcagtaac aaccttccag cgaacggacc
      421 agtgttcgct atcgctgaag accatgtaaa tccgaacttg ctgtttgttg gaaccgaatt
      481 cggtcttttc ttttcggttg atgctggaca gaagtggatt caactcaaag gcggactccc
      541 aacaattgcg gttcgcgatt tgaatattca gaaacgtgaa aacgatctcg ttgtggcgac
      601 gtttggtcgg ggtgtctaca tcctcgacaa ctacacacca ctgcgcacaa ttaaagccga
      661 cgcgctcaaa caagagtcaa tcttgtttcc ggtgaaggat gctttgatgt atatccagtc
      721 gcaacccctc ggcggacgcg gtaaaagttt tcagggggaa acgttcttca ctgctgacaa
      781 cccgcctttt ggtgcgactt tcacctggta tctgaaagac gcactgaaga caagaaaaga
      841 aaaacgacag gaaacagaga aagaggcgga gcgcaagaaa gaaccggctg gttggccaag
      901 tcaaaccgag cttcgtgctg aagatgaaga agaagctcct gcaatcgtcg taacgatcac
      961 cgattcgagt gatcgagttg tgcgtcgact tacaggtccg gtggccgcag gaattcaacg
     1021 tttgacgtgg gaccttcgtt atccagcggc aaatctttcg gcgccgcctc cgcccgacg
//
LOCUS       DATCGC010001537         1653 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_287725, whole genome shotgun sequence.
ACCESSION   DATCGC010001537 DATCGC010000000
VERSION     DATCGC010001537.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1653)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1653)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1653
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287725"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            30..>1653
                     /locus_tag="VIJ87_14710"
     CDS             30..>1653
                     /locus_tag="VIJ87_14710"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein/permease"
                     /protein_id="HEY5445687.1"
                     /translation="MTNRSGGGKIRLLDEVDLSIQSNEFVGLLGPSGAGKSTLMDSLN
                     GMRPASSGHVLVNNLDLYQHLESLKQSIGYVPQDDIIHRELTVYRTLYYVARLRLSRD
                     ISTEEIDQVVSEVMDITGLSERRDVPISQLSGGQRKRVSIAVELITKPSVIFLDEPTS
                     GLDPATEEKVMKLFRQIAESGRTVILTTHAMENVKLFDKLVVLMRGKLVFYGKPQEAL
                     AHCGAESFKDLYDKLEAPIFEKLRQANGRANKDQIAEEVADDWKRRFLQTEQYRMNVE
                     IPLRSVSAGAHVTAPARRRGSLGDWIRQWATLARRYLEVLSADKFNLLILFGQAPIIA
                     LLTYIVVGAKAPRDFVYFVLALVSLWFGTSVAAREIIRERAVYKRERMVNLRLLPYVG
                     SKILILSLIVGLQCLLLFGTLKFLDVTGLMSFPGGFGGIGHLVVMMVTSLVGISLGLF
                     VSAVVKTSEMATSLIPLILIPQILFSGLVGIPTGMSKAIGVIMPATWAFDEMKRLSSL
                     EVLRAKDEKAQPSDKEEGRGLYKEIERKNDQNI"
BASE COUNT          396 a          407 c          445 g          405 t
ORIGIN      
        1 gtgttgacgt tgtcaaaatc acaaaggaag tgaccaacag atcgggtggc ggcaagattc
       61 gtctgctcga tgaagtggac ctcagcatcc aatcaaatga gtttgtcgga ttgctgggac
      121 cttccggcgc cggcaagtcg acgttgatgg attcactaaa cgggatgcga cctgcttcca
      181 gcggacatgt tctggtcaac aacctggatc tttatcaaca tctcgaatcg ttgaaacagt
      241 cgatcggata cgtacctcag gacgacatca ttcatcgcga gttaactgtc tatcgcacgc
      301 tctactacgt cgccaggctc aggctttcga gagacatttc aactgaagag atcgaccagg
      361 ttgttagcga ggtgatggac atcaccggat tgtcggaacg acgcgatgtt cctatctcac
      421 aactctcggg tggacaacgt aagcgtgtgt cgattgcagt cgaactgatc accaagccgt
      481 cagtaatctt tctcgacgaa cccacctcag gactcgatcc ggccactgaa gagaaagtaa
      541 tgaaactctt ccgccagatt gccgaatctg gcagaacagt aatcctgaca actcacgcga
      601 tggagaacgt gaaactgttt gacaagctcg ttgtcctcat gcgcggcaag cttgtctttt
      661 acggtaaacc gcaagaggca ctcgcacatt gtggcgctga gagttttaag gacctctacg
      721 acaaactaga agcgcctatc ttcgaaaagc tacgacaggc aaacgggcgc gctaataagg
      781 atcagatcgc cgaggaagtt gccgatgatt ggaagcgccg gtttctccag accgagcaat
      841 atcgaatgaa tgtggagata cccttgcggt cagtaagcgc aggggcacat gtcaccgccc
      901 cggcgagacg acgaggatca ctcggtgatt ggattcgcca atgggccacg ctggctcgtc
      961 gatacctgga ggtactctca gctgataaat tcaacttgct gatcttgttt ggccaggccc
     1021 cgatcatcgc cctgcttacc tatattgtcg tgggcgcaaa agccccacgc gattttgtct
     1081 atttcgtgct cgccctcgtc tcgctttggt ttggaacgtc tgtcgcggct cgggaaataa
     1141 ttcgagaacg ggcggtctac aaacgcgaac ggatggtgaa tctgcggctg cttccttacg
     1201 ttggctcgaa gattttaatt ctgagcttga tcgttggttt gcagtgtctg ctgctcttcg
     1261 ggactttgaa gtttctcgac gtcacaggct tgatgtcgtt tccaggaggg ttcggaggta
     1321 tcggtcatct cgtagtgatg atggtgacga gtttggtcgg aatctctctc gggctttttg
     1381 tctctgccgt ggtgaagact tccgaaatgg ctaccagctt gattccactg attctaattc
     1441 cgcaaatctt gttttcaggc ctggttggta ttcccaccgg aatgtcgaag gcgataggtg
     1501 taatcatgcc ggcaacctgg gccttcgacg agatgaagcg tctttctagt ctggaagtac
     1561 tgcgtgcgaa agacgaaaag gcgcaacctt cggacaaaga agaaggtcgc ggtctttaca
     1621 aggagatcga acgaaagaac gatcaaaaca tcg
//
LOCUS       DATCGC010001538         1362 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_355779, whole genome shotgun sequence.
ACCESSION   DATCGC010001538 DATCGC010000000
VERSION     DATCGC010001538.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1362)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1362)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1362
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_355779"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            262..1098
                     /locus_tag="VIJ87_14715"
     CDS             262..1098
                     /locus_tag="VIJ87_14715"
                     /inference="COORDINATES: protein motif:HMM:NF018129.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GvpL/GvpF family gas vesicle protein"
                     /protein_id="HEY5445688.1"
                     /translation="MSDAQRGSSKKTGPSGTGLYVYCIAESDAARAIATESLPAPIEE
                     DASLELIVVDDFAAVASQVPLSMYGEETLEDNLNEAAWTAVRAMRHERVVEYFARRTG
                     VVPLRFGTIYLGRDGVERMLSEKADELKEIIQRIGGSEEWGVNVFSDREKLLNAVTEL
                     SPKLRDLTEQARNTSPGQAYLLQKKIEGLRTDESRNELVRIVDAIEARLSRKAKAGKR
                     LRVLKVEATESGELKAKFAFLVQKTSFDDFRDEAEKIAKEFDKIGIRLELTGPWPTYN
                     FA"
     gene            1107..>1362
                     /locus_tag="VIJ87_14720"
     CDS             1107..>1362
                     /locus_tag="VIJ87_14720"
                     /inference="COORDINATES: protein motif:HMM:NF012944.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gas vesicle protein"
                     /protein_id="HEY5445689.1"
                     /translation="MSSPFEQVLISSDVEQLEEADLSLLETLDHVLNKGLVIAGEITI
                     SVADVDLIFLGLNVLVSSVEKANEVVRARAARQLEKESSNR"
BASE COUNT          348 a          310 c          403 g          301 t
ORIGIN      
        1 gaacctgctg gatcatgcag cttctgccga agccggcggg atcaacagct tgcggtactt
       61 gacgaattca agcgaaggct caagacgcaa ctgtttagtg cgcctcaaca gccgtttgcg
      121 attcagggac caggtgatct attgcaccat ttctcagcct ggactctaat cgacggcagt
      181 aagaccgtgc gctcgagcag atcgaaggtc aagaatgtca gtcgatccaa atgaaagaaa
      241 cgccaaagaa atgaattgcc tatgagtgac gcccagcgcg gttcgtcgaa gaagactgga
      301 ccatccggca caggacttta cgtgtattgc attgccgagt cagatgcggc gagagcaatt
      361 gccactgagt cactgcccgc gccgatcgag gaggatgcgt cgctcgaatt gattgtcgtc
      421 gacgatttcg cggcagtggc cagtcaagtt cctttatcga tgtatggcga agaaactctg
      481 gaagacaatc tgaatgaggc ggcctggacc gcagtccggg caatgcgcca tgaacgggtc
      541 gtcgaatatt ttgccaggcg cacaggtgtc gttccgttgc gctttggcac tatttacctg
      601 gggcgcgatg gtgtggagcg aatgcttagc gagaaagccg atgagttaaa ggagatcatt
      661 cagcgcatcg gcggaagcga agagtggggc gtcaacgtct tttctgatcg agagaaactc
      721 ttaaacgcgg tcacggagtt gagtcccaaa ctgcgagacc ttacagagca ggcaagaaac
      781 acttcgcctg gtcaggctta cctgttgcag aagaagatag aaggtcttcg aaccgacgaa
      841 tcccgaaatg aattggttcg tatcgtcgat gcgatcgaag cgcgtctgag tagaaaagcg
      901 aaagcaggga agcggctgcg tgttttgaaa gttgaagcga cagaaagtgg agagctgaag
      961 gcaaagtttg cgttccttgt tcaaaagacg agctttgatg attttcgcga cgaggctgag
     1021 aagatcgcaa aagagtttga caagatagga attcggctcg aactcactgg cccatggcct
     1081 acttataact tcgcataacg aacggtatga gttctccttt cgaacaagtc ttgatcagtt
     1141 ctgacgtgga acagctcgag gaagcagatc tgtcgctgct cgagactctg gaccacgtcc
     1201 tgaataaggg gttagtcatc gccggcgaaa ttacgatttc ggtggccgat gtcgatctga
     1261 tttttctggg cctcaatgtg ctggtgagtt cggttgagaa agcgaacgaa gttgtgcgtg
     1321 cgcgcgcggc gcggcagctt gagaaggaat caagcaatcg ct
//
LOCUS       DATCGC010001539         1174 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_221138, whole genome shotgun sequence.
ACCESSION   DATCGC010001539 DATCGC010000000
VERSION     DATCGC010001539.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1174)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1174)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1174
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221138"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1174)
                     /locus_tag="VIJ87_14725"
     CDS             complement(<1..>1174)
                     /locus_tag="VIJ87_14725"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEY5445690.1"
                     /translation="QVGNTTFTLSPGVTKQFSTGGGNYEALFSNSRTKTTATNSTLNP
                     FYSSNLSLSFTQPLWRDRSIDNNRRQIRIQRKRIDQSDADFRLRTIDVITRVQQAYWE
                     VVFALRDQQNQLANLNLTRENLRNVEAQIAAGAKAPLERAEVQTELASRETALLTAVQ
                     NVSITENNLKQLIFKDPASPDWSSQITPTDTPSFNEVPVNLDEAIKTARENRPELRRL
                     RLQADINGIDLQFFRNQTKPQMDLVGTVATTGLAGAAAATLAPGTPVPLISGDPNTVA
                     NSFLLSQIQDIQRRLVFPVSQTPVVLSPALAPSDLVGGYGKTLANLGSFNTYNVTVGV
                     AIQIPFKNKTAEANLAGANILREQLLASMRSTEQTVEVDVRNAAQAVESSRRRVFSA"
BASE COUNT          258 a          297 c          308 g          311 t
ORIGIN      
        1 cgcggaaaac acgcggcgtc gcgaactttc aaccgcctgc gctgcattac gtacgtcaac
       61 ttcaaccgtt tgctcagtgg acctcatgga tgcaagcagt tgctcgcgca gaatatttgc
      121 gcccgcaagg ttggcttctg cagtcttatt cttaaacgga atctgaatgg ctacgcctac
      181 cgtaacgttg taggtattaa agctgccaag gtttgccagc gtctttccat agccaccaac
      241 cagatccgat ggtgccaatg ccggagaaag aacaaccgga gtttgcgaga ctgggaacac
      301 taacctacgc tgaatgtcct gaatctgact caacaggaac gaattggcga ccgtattagg
      361 atcaccagaa atcaacggca caggtgttcc tggtgcgagg gtcgctgcgg cagcacccgc
      421 taatccagtt gttgccactg tccctaccag atccatttgt ggtttcgttt gattcctgaa
      481 gaactggagg tcaatgccgt tgatgtcggc ctgcaatcgc agacggcgca actcaggtct
      541 gttttcgcgc gctgtcttga tcgcttcgtc gagattaacg gggacctcat taaaagaagg
      601 agtgtccgtg ggcgttatct gactggacca atccggcgaa gctggatctt tgaagatcaa
      661 ttgcttgaga ttgttttcag tgatggaaac attctgaaca gcagttagca aagccgtttc
      721 cctgcttgcc agttcggttt gcacttcagc tcgctccaac ggagccttcg cgcctgcggc
      781 gatctgggct tcgacatttc tgagattctc acgcgtgaga ttcaggtttg cgagttgatt
      841 ctgttgatcc cgaagtgcga ataccacttc ccaataagcc tgctgcactc tcgtgatgac
      901 gtcgatcgtt ctcagtcgaa aatcagcgtc tgattggtca attcgttttc gctgaatccg
      961 aatttgccgt cgattgttgt cgatcgagcg gtctcgccag agcggctggg taaagctcaa
     1021 actcaaattt gacgagtaga agggatttag cgtgctgttc gtcgctgttg tctttgtgcg
     1081 ggagttactg aacagtgcct catagtttcc gccgcctgtc gagaattgtt tagtgacacc
     1141 cggactcagt gtaaaagttg tgttcccgac ctgc
//
LOCUS       DATCGC010001540         3546 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_287741, whole genome shotgun sequence.
ACCESSION   DATCGC010001540 DATCGC010000000
VERSION     DATCGC010001540.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3546)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3546)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3546
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287741"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            46..1731
                     /locus_tag="VIJ87_14730"
     CDS             46..1731
                     /locus_tag="VIJ87_14730"
                     /inference="COORDINATES: protein motif:HMM:TIGR03663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flippase activity-associated protein Agl23"
                     /protein_id="HEY5445691.1"
                     /translation="MLVATSSTKSNVNRSCSGSTSFSLNKVPGRVDLSAQGVPDVSEQ
                     TWRIGSIAILCLSAILRLYNLNLVPLHHDEGVNGNFLLTLVRDGRYHYDPANYHGPTL
                     YYLSAIIPWITKLLFGTTARDTYGLTTFTIRLVPAAFGIATIVLVFSLRGRLGTVATL
                     SAGFLLAISPGAVYLSRYFIHETLFVFFTLGIVVAALKFHESRNPTYLLLASASAAML
                     FATKETAMISGGVLLIALASTLVYQRVLGFGGGRRRSAKDSVERGSFLAELGGGTSLS
                     IWIALAILVFVAIYVFFYSSFFTNYPKGVYDSLKTFEVWTKTGQQAHVHPPETYLTWL
                     IKQESALLFLGAIGAVFVIFKPKNSFALFSALWAFGLIAAYSLVPYKTPWLDLNFILP
                     LALISGYAVQRLYELEKGQLRLPVAILVVAGLIGLYQTIDLNFFNYDNDDVYYVYVYA
                     HTKRGTKDLVDEIEKFASQGNEGGKTGITIVSPDYWPLPWYLRNYSRVGYYGRMSPST
                     EPLIIASETQRAEVESTFGDRYQQIISKEPGGVFSLRPGVNLLLYARRSGVPQ"
     gene            1934..>3546
                     /locus_tag="VIJ87_14735"
     CDS             1934..>3546
                     /locus_tag="VIJ87_14735"
                     /inference="COORDINATES: protein motif:HMM:NF024573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY5445692.1"
                     /translation="MFKLQRLEITGFKSFADYTQVLFTGDGITAIVGPNGCGKSNVAD
                     AIAWVLGEQRIKHLRGGEMKDVIFQGSRNRQPSGMAEVVMHLVRDETSEEEPDIEDID
                     STLEQIDHQLVNLDAILPQEAVQAETPVLEVSAEPASEQIAPEGEPTVASTDIAVVAT
                     QPSQPKIATKRHWRRRNLALEFAPGEAVSVTRRLYRSGESEYLLNDKICRLRDIQDLF
                     SGTGLAGGHYAIIEQGRIGQILSAKPMDRRTIIEEAAGITKFRVRQRATEARLDSARS
                     NLSRISDIVSEIDRQVNSLRRQAAKARRYGVLREELRELLRQVYVAEDKKLTTVLEET
                     KTKLSEIAELELGIAEELARREDEAKSATQEARTFEDELTTARAAAAEAVLQRDRQAR
                     ECLYQQEQFADLEKRKSEVSAEIDALTARLILIEAECRRLQEEDARLREESDQSALSL
                     RTAEEAYAGRLSAATAAEAEIEGARAELLSQTAMAERLREIARQLEGTLERLMQQAEG
                     LAREGERANSQHAERKLEAEQFALELGDA"
BASE COUNT          844 a          907 c          923 g          872 t
ORIGIN      
        1 tgccggttaa cgaacagttc ttttcccact acgaaaaagt cggagatgtt ggtggctacc
       61 agctctacaa aatcaaacgt taataggtct tgctccggtt cgacctcttt ttctttgaat
      121 aaggtgccag ggcgagtcga cttgagtgct caaggagtgc cagatgtttc agaacaaacc
      181 tggcgaatag gctcgatcgc gattctttgc ctctctgcga tattgcgtct ttataacctc
      241 aatctggttc ccctccatca cgatgaaggt gttaacggga attttctcct cacgctggtt
      301 cgtgacggtc gctaccatta cgatccggcg aattaccacg gacccactct ttattacctg
      361 agcgcgatta ttccctggat taccaagctg ctatttggta ccaccgcccg agatacctac
      421 ggactaacga cctttactat tagattggtt ccggccgcgt ttggcatcgc taccatcgtc
      481 ctggtgtttt cgttgagagg acgattggga accgttgcaa ctttgagcgc cggctttctt
      541 ctagctatct cgccgggagc tgtctattta tctcgctact ttattcacga gacgcttttt
      601 gttttcttca cgctcggaat tgtggttgct gctctgaagt ttcacgaaag ccgaaaccca
      661 acctatttgc ttttggcatc cgcctccgcc gcgatgcttt ttgccaccaa agagacagca
      721 atgatctcgg gcggtgtttt gttgatcgcc ctggcatcga cgttggttta tcagcgagtg
      781 ttaggtttcg gcggcggccg acgtcgctcg gcgaaggact ctgtcgagcg tgggtctttc
      841 ctagctgagc ttggcggtgg tacatccctg tctatttgga ttgccctggc tattttggtg
      901 ttcgtcgcaa tctacgtctt tttctattct tcgtttttca ctaactatcc aaaaggtgtt
      961 tacgattcac tcaagacttt tgaagtatgg acaaagacgg gacaacaagc tcacgtccat
     1021 ccgcctgaaa cctatttgac ttggctcatc aagcaggaat cggcactgtt gttccttggc
     1081 gcgatcggtg ccgtgttcgt catcttcaag ccgaaaaact cgttcgcctt gttcagtgca
     1141 ttgtgggcat ttggcttaat tgcggcctac tcgttggtac catataagac gccttggctg
     1201 gatctgaatt tcattttgcc tttggcgctc atttccggtt atgccgtcca gcgtctttac
     1261 gaattggaga aggggcaatt gaggctgcct gtggccattc tggtggtcgc cggcttgatt
     1321 ggcctatacc agacgataga tctgaacttt ttcaactatg acaacgacga tgtctactat
     1381 gtttatgtct atgcccatac caagcgagga acaaaggatc tcgtcgatga aatagagaag
     1441 tttgcgagcc agggaaatga aggcggaaaa acagggataa ccattgtttc acctgactat
     1501 tggcctttac cgtggtattt gcgcaactac agccgggttg gatactacgg gcggatgagc
     1561 ccttctactg aaccgctaat aattgcttca gagacccagc gggcagaggt ggaatccacc
     1621 ttcggggacc gctaccagca gattatctcg aaggagccgg gcggggtatt ctcactgcgg
     1681 ccaggagtca atctgttgct ctacgccaga cgatcaggtg ttcctcaata gccaaagtct
     1741 aaacttcagt taatccccaa aaatttaagc gaacaaacta actttgcttc tgacttcatt
     1801 aagggaagct aagttcaggt tctggttgac attctaagcg cctcccactt atattgacca
     1861 cccgtacaca catcccctcg aagccaactg ttctggttaa gaggccggcc caaaaagagc
     1921 aatttagcag cgcatgttca aacttcaacg tctggaaatt accggtttta aatccttcgc
     1981 cgactacaca caagtactct tcaccggaga tggcataact gccattgttg gccctaacgg
     2041 ctgcggcaaa agtaacgttg ccgacgcaat cgcctgggtt ttaggtgaac agcggataaa
     2101 acacctgcgc ggtggcgaaa tgaaggacgt catcttccag ggatctcgga atcgtcagcc
     2161 cagtggaatg gctgaggtcg taatgcacct cgttcgagat gagacgagcg aagaagaacc
     2221 cgatatcgaa gatatcgact ccacgctgga acaaatcgac catcaactgg tgaatctgga
     2281 cgcgattctg ccgcaggaag cggttcaggc cgagacgccg gtattggaag tttccgctga
     2341 accagcaagc gaacagattg ctccagaagg cgaacccaca gtggcttcca ccgatatcgc
     2401 cgtggtcgct actcagccct cccagccaaa aatcgcgact aagcgtcatt ggcgacgtcg
     2461 caatctggct ctggaatttg ctcctggtga ggctgtttca gtcacacgca ggctttaccg
     2521 gtcgggcgag agcgaatacc tgcttaacga taaaatttgc cgccttcgtg atatccagga
     2581 tttgttttca ggtacaggct tagcaggtgg tcactacgca atcatcgaac agggtcgcat
     2641 cggtcagata ctttctgcga agccgatgga tcgccgaaca atcattgagg aagcggccgg
     2701 aattacaaaa tttcgcgtcc gacaacgcgc aaccgaggcc cgcctcgact cggctcgttc
     2761 aaatctttca cgtatctccg acatcgtttc tgagattgat cgccaggtaa atagtttgcg
     2821 cagacaggcg gcaaaggctc gtcgctatgg agtcttgcgc gaggaactgc gagaactcct
     2881 tcgacaggtt tatgtggccg aagataaaaa gctgacgact gttctcgagg agaccaagac
     2941 gaagttgtct gagattgctg agctggaatt gggaattgct gaagaactcg cgagacgtga
     3001 ggacgaagct aagtcagcaa ctcaagaagc cagaaccttt gaagacgaac ttacaaccgc
     3061 ccgcgcagct gccgccgaag ccgttctcca acgcgaccgg caagctcgcg aatgtttgta
     3121 tcagcaggag cagttcgccg acctcgaaaa gcgcaaatca gaagttagcg ctgaaatcga
     3181 tgctctaacg gcgcgcctaa ttctgattga ggcggaatgc cgtcgacttc aggaagaaga
     3241 cgcgagacta cgcgaggaat cggatcagag cgccttgtcg ctgcgaacgg cagaagaggc
     3301 ctacgcaggt cggctttctg cggccacagc agctgaagct gagatcgaag gcgcacgtgc
     3361 cgaactgctt tcgcagacgg caatggctga gcgacttcgt gaaatcgctc gccagcttga
     3421 aggcactctc gaacgcctga tgcagcaagc ggaaggtttg gcgcgcgagg gagaacgagc
     3481 aaacagtcaa catgctgagc gtaagctgga ggctgagcaa ttcgcgctgg aacttggcga
     3541 tgcaag
//
LOCUS       DATCGC010001541         1681 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_55969, whole genome shotgun sequence.
ACCESSION   DATCGC010001541 DATCGC010000000
VERSION     DATCGC010001541.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1681
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55969"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..366
                     /locus_tag="VIJ87_14740"
     CDS             <1..366
                     /locus_tag="VIJ87_14740"
                     /inference="COORDINATES: protein motif:HMM:NF012304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNase H family protein"
                     /protein_id="HEY5445693.1"
                     /translation="MELQAAIEALGALKEPCEVDFFTDSEYVRNGITEWLSTWRSNGW
                     RTKARQSVKNEDLWRTLDAAASRHKINWHWLKGHSGHQHNERCDQLANDALAKFIQIS
                     KAQEPSADSHPDQRRLPTR"
     gene            440..1165
                     /locus_tag="VIJ87_14745"
     CDS             440..1165
                     /locus_tag="VIJ87_14745"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HEY5445694.1"
                     /translation="METPAPVEPIGPKGRRRPGPGKTDYLLCVDTPNGPKPLPVAILE
                     AKKENEDPLKGMQQAKGYSDCERFDAKYIFSTNGHLYAKFNKFTGEQTGPFPFADFPD
                     HKRLTDCFHRHTGIDLNDPSSSILFQPDSPAYPETRYYQDAAIRVAFEKIIKSENEGI
                     PPRILLSLATGSGKTIIAANLLWRFHEAERLPKPALFLCDRDELREQAYTKLKAVSSF
                     VPQSRDCGMTRLSAESCKARSRS"
     gene            1231..>1681
                     /locus_tag="VIJ87_14750"
     CDS             1231..>1681
                     /locus_tag="VIJ87_14750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445695.1"
                     /translation="MAYNVNTKPLDELQRRLADLPRERPGSSGDLSEAITAFVNAFDC
                     LLRLMQAILSRIAESKGRATFLPIFETARANSVSLLRNKLLEPDGSEQEDIIEMIYDL
                     RDSILAEEFVAVAQVMDAPEREAPPEEDAETAKTAIDSVKEFITRYIP"
BASE COUNT          453 a          433 c          430 g          365 t
ORIGIN      
        1 atggaattac aagcggcaat cgaagccctc ggtgccctca aagaaccttg cgaggtagat
       61 ttttttactg actctgagta cgtcagaaac ggtataacgg agtggctgtc gacttggcgg
      121 tcaaacggct ggcgaactaa ggcgaggcaa tcggtcaaga atgaagacct ttggcggacg
      181 ttggatgcag ccgcgtctcg ccacaagata aactggcatt ggttgaaagg tcattcaggc
      241 catcagcaca atgaacgttg cgatcagcta gctaatgacg ctcttgccaa attcattcag
      301 atttcgaagg cacaagagcc atccgcagat agtcacccag accagcgtcg gttgccgact
      361 cgatgaacga agccgaaaca cgttatgagt taatcgatcc ggttttacga ggtaaggata
      421 tcggactccg tatatccgat tggagacgcc agcaccggtt gaaccaattg gccccaaggg
      481 gcgacgccgg cccgggcctg gtaagacaga ttatctattg tgcgttgaca ctccgaatgg
      541 accgaagccg ttgccggtcg caatcctcga agccaagaaa gagaacgaag acccacttaa
      601 aggaatgcag caggcaaaag gttattcgga ctgtgagcgc ttcgatgcga agtacatctt
      661 ttccacgaac ggacatctgt acgcaaaatt caacaagttc acaggcgagc aaaccggtcc
      721 cttcccattt gccgacttcc cggatcacaa acggctgacg gattgttttc accgacacac
      781 cggaatcgat cttaacgatc cctcttcatc cattctcttt cagcccgata gcccggccta
      841 tcccgaaacg cgatattacc aggacgccgc aattcgtgtg gcattcgaga agatcatcaa
      901 gagcgagaat gaaggcatac cgccccgcat tttgctttcg ctcgcgaccg gttcaggcaa
      961 gacaatcatt gctgcaaacc ttctctggcg attccatgaa gcggaaagac ttccaaagcc
     1021 ggctctcttt ctttgcgaca gagacgaact acgcgaacaa gcttacacta aactcaaggc
     1081 cgtatcctcc ttcgtcccgc agtcgcggga ctgcggcatg acaagactaa gcgctgaaag
     1141 ctgcaaggct cgaagtagaa gttaggagtt agaagctccg atttggtttt gggattgact
     1201 gctaacgtgc cggcaaaata gaagatggct atggcgtaca acgttaacac taaaccgtta
     1261 gacgagcttc agagacgatt ggccgatctg ccacgcgaac gtcctggttc gagcggcgac
     1321 ctaagcgagg caattaccgc gttcgtcaac gcttttgatt gtttgttacg gcttatgcaa
     1381 gcaatcctca gccgcattgc tgaatccaag ggtcgggcta cgtttctccc gatttttgaa
     1441 acggcccgtg caaatagcgt atcactctta cgcaacaaac ttcttgaacc ggatgggagt
     1501 gaacaagagg acataatcga aatgatctac gacttgcgtg attcgatatt ggccgaggaa
     1561 tttgtggcag tggcgcaagt catggacgca ccggagagag aagcgccacc tgaagaggac
     1621 gctgaaactg ctaaaactgc catcgatagc gtcaaggaat tcatcacgcg atatattccg
     1681 t
//
LOCUS       DATCGC010001542         1311 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_488281, whole genome shotgun sequence.
ACCESSION   DATCGC010001542 DATCGC010000000
VERSION     DATCGC010001542.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1311)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1311)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1311
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_488281"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..812)
                     /locus_tag="VIJ87_14755"
     CDS             complement(<1..812)
                     /locus_tag="VIJ87_14755"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HEY5445696.1"
                     /translation="MITPQQLEEYETQGFLVLAGFCEDVETNALRTRADELVREFDPS
                     DLPSIFSTHEQSRVTDEYFLTSGDKIRFFFEENAFNPDRTLKQAKEKSINKIGHALHD
                     LDPVFDRFSRSDKIKQLSADLGIENPLLLQSMYIFKQPNIGGEVTCHQDSTFLYTEPN
                     EIVGLWFALEDATLENGCLWAIPGGHTRGLKSRWVRNGQVRMEFQTFDPEPWPEEKLV
                     PLEVKKGNLILLHGLLPHRSLENKSSKSRHAYTLHLIGGGAKYPADNWLQRS"
     gene            complement(814..>1311)
                     /locus_tag="VIJ87_14760"
     CDS             complement(814..>1311)
                     /locus_tag="VIJ87_14760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445697.1"
                     /translation="LTLGLLGTTFLITPSEAVVSHYVFLFLLGIASYQFRKALMSATV
                     FGFAVGVLLVMLIVSLGLEEALVGVATALTITFVKYKGRALQFFGRISYSLYLTHMVA
                     GSSIIEFGLNGRVHSFPGRICLYLIAFAVTIAFAYCFYRLVEVPSIRWSKTLSYGKVG
                     TSSRG"
BASE COUNT          348 a          316 c          325 g          322 t
ORIGIN      
        1 tgagaccgtt ggagccagtt gtctgctgga tactttgcgc cgccgccgat caggtgcaat
       61 gtgtaggcat gacgtgactt tgaagacttg ttctcaagac ttcgatgcgg gagaagtcca
      121 tgaagcagga tcaaattccc ttttttgact tccaaaggca ccaacttttc ttccggccaa
      181 ggttcaggat caaacgtttg aaactccatt cgaacctgtc catttctcac ccaacgcgat
      241 ttcagtccgc gtgtgtgacc gcccggaatc gcccataggc atccgttctc caacgtcgca
      301 tcttcaagcg cgaaccagag tccgacgatc tcgttcggtt ctgtgtagag gaatgtgctg
      361 tcctggtgac aggtaacttc gccgccgatg tttggttgct tgaagatata catcgactgg
      421 agaagaagcg gattctcgat gccgaggtct gctgagagtt gtttgatctt atcgctacgt
      481 gagaagcgat cgaaaacagg atcgagatcg tgaagcgcgt gtccgatctt gtttatggat
      541 ttttcttttg cttgtttgag tgtgcggtcg ggattgaagg cgttctcttc aaagaagaat
      601 cgaatcttgt cgccggaggt taggaagtac tcatcagtca cacggctttg ttcgtgagtt
      661 gagaagatcg aaggcagatc tgaagggtca aactcccgta ctagttcgtc tgcgcgagtt
      721 cgcaaggcgt tggtctcgac gtcctcgcag aaacccgcga gcaccaggaa gccttgagtt
      781 tcatactctt caagttgttg gggtgtgatc attctaacct cgagatgatg ttccgacctt
      841 cccgtaagat aacgtcttag accacctaat cgaaggcacc tccaccagtc gataaaagca
      901 ataagcgaag gcaatcgtta cagcaaaagc aatcaaataa agacaaatac gtccaggaaa
      961 actgtgtacc ctgccattga gaccaaactc tatgatgctc gagccggcga ccatgtgagt
     1021 cagatagagg gaataagaaa tcctgccgaa gaactgaaga gctctgcctt tgtacttaac
     1081 aaaagttatc gtcaaagcag ttgccacacc aactagagcc tcttccaggc ccagactcac
     1141 tattagcatc actagaagaa caccgacggc aaaaccgaag accgtcgcgc tcattaacgc
     1201 ttttctgaat tgatagctag cgattcccag cagaaaaaga aatacgtagt gactaacaac
     1261 agcttcggac ggagttatca ggaaggtggt tcccagaagc cctaaggtta a
//
LOCUS       DATCGC010001543         1286 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_488291, whole genome shotgun sequence.
ACCESSION   DATCGC010001543 DATCGC010000000
VERSION     DATCGC010001543.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1286)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1286)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1286
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_488291"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            199..>1286
                     /locus_tag="VIJ87_14765"
     CDS             199..>1286
                     /locus_tag="VIJ87_14765"
                     /inference="COORDINATES: protein motif:HMM:NF013166.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase domain-containing protein"
                     /protein_id="HEY5445698.1"
                     /translation="MAARELGTSEKSLVAYVVLEKTVTPDVEPIRQYLKQKLPDYMLP
                     VAFVLLEAMPVNLNQKLDRRALPPPSSENLAKLRTSVSARDDFEKELVEIWEDALDVR
                     PIGIRNSFFELGGDSLQAVQILLQIEERWQKTLPITILTETKSIEALAKVIRNLGDQS
                     KLGEETFFSNVVPLRSGGSKPPLFCLQGVLLYQTVAQYVETDRPVYGVYLPEEVELLK
                     TRKYDPVNSVFSSIPRIASRYLQSIRSVQPHGPYYLAGSSFAGLIAFEMARQLRASKE
                     EVALVAMFDSWMITKLPLQRRFRGHRDLFLEHGFSYLWSKVHHRTKGIRRKMGLTPAY
                     EQITQGDRVADGPSRVSAEVQHDILDEV"
BASE COUNT          308 a          332 c          347 g          299 t
ORIGIN      
        1 ccggagttgt ccgcggagaa gtttctcaca attgacgggc aacgatttta tcgcacggga
       61 gatctggctc gatttgaccg tggcaatttg gaaatcctgg gtcgagttga ttttcaaatt
      121 caactccggg gaattcgaat agaaccggcc gaaatcgaaa ctcatctccg ccaggcgccc
      181 ggtgtccgag aaggagtagt ggcagcgcga gagttaggaa cgagcgagaa aagccttgtt
      241 gcctatgtcg tcttggagaa gacggtgacg ccggatgttg agcctatccg gcagtatctg
      301 aaacaaaaac tgcctgatta catgttgcct gtcgcctttg tgctccttga ggccatgccc
      361 gtcaatctta atcaaaagct cgaccgccga gctttgccgc ctcctagctc ggaaaatctg
      421 gcgaaactac gaacatcggt ttcagcgcgc gatgatttcg agaaggagct ggtcgagatt
      481 tgggaggatg cgctagacgt gcgtcccatc ggcattcgca acagcttctt tgagctgggt
      541 ggcgactcgc ttcaagccgt gcagatcctg ctgcaaattg aggaacgatg gcagaagact
      601 ttgccgatca ctattctcac agaaacgaaa tccattgaag cgttagctaa agtaattcgc
      661 aatttaggag atcaaagcaa gctaggagaa gagaccttct tcagcaacgt agtgcctttg
      721 cgcagcggtg gctccaaacc gccattgttc tgtctccaag gcgtgttgct gtatcaaacc
      781 gtggcccaat atgtggaaac ggatcgcccc gtttatggcg tctatttgcc agaggaggtg
      841 gagctcctca aaacccgcaa gtatgatcca gtgaattcag tgttctcgag cattccgcgt
      901 atcgcctctc gttaccttca atcgattcgc tcggttcaac cccatggtcc ctactatctg
      961 gctggctcct cctttgccgg cctgatcgcg ttcgagatgg cccgtcaact acgagccagc
     1021 aaagaagaag tggcgctggt ggcaatgttc gactcctgga tgataacgaa attacccctg
     1081 caacgccgat tccgaggtca ccgagacttg ttcctggagc atggattctc ttacttgtgg
     1141 agcaaagtgc atcatcgaac gaaaggcatt cgccggaaga tgggtctcac ccccgcttac
     1201 gagcagataa cccaaggaga ccgtgtcgcg gacggaccct cgcgagtcag cgctgaagtg
     1261 cagcatgata tcctggatga agttaa
//
LOCUS       DATCGC010001544         1064 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_420230, whole genome shotgun sequence.
ACCESSION   DATCGC010001544 DATCGC010000000
VERSION     DATCGC010001544.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1064)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1064)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1064
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_420230"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            51..>1064
                     /locus_tag="VIJ87_14770"
     CDS             51..>1064
                     /locus_tag="VIJ87_14770"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEY5445699.1"
                     /translation="MGQQENLTYDFGRFRLNTAERILLREGEPVPLTPKVFDILITLV
                     ENRGQVVGKDDLMKKVWPTTFVEEGNLTQNVSLLRKALGESAGGAQFIETVPRRGYRF
                     VAQINESRAENGISFADGLAPAAANGNGKVVEQLATPASVSPSEATQNGNNAVSTPEV
                     VNPSFFSRIVPFEKSRVGVALTAAVVLIAIAGLVYFTGRSKAGDLGPDAIQSIAVLPF
                     VDDAGDADAEYLNDKIAESLINSLSKLPQLRVVPRSVVAGYKGKQLDPRQVGKDLNVR
                     AVVMGSMRRHGDIISIQADLIDLENVSQLWGQHYDHKIADVILVQEDISRDIFENLRL
                     KLNV"
BASE COUNT          252 a          266 c          293 g          253 t
ORIGIN      
        1 ctcagatcgc actcaagaaa ccctcaaaga tatttctcaa ggccgttttt atggggcaac
       61 aggaaaatct cacttacgac ttcggtcgct ttcgcctaaa tacggcggag cgaatcctgc
      121 tgcgcgaagg tgagccggtt ccacttaccc caaaggtttt cgacatccta atcacgcttg
      181 tggaaaaccg aggtcaggta gtcggaaaag atgacctgat gaaaaaggtc tggcccacga
      241 ccttcgttga agagggaaat ctgactcaaa acgtttcact tctccggaag gctctgggtg
      301 agagtgccgg tggggcgcag tttattgaga cagtgccacg acgcgggtat cgctttgtag
      361 ctcaaatcaa tgaatcgcgg gccgagaatg ggatttcttt tgctgatggg ttagccccgg
      421 cagcagcgaa tggtaatggc aaagtagttg aacaactcgc tacgccggct tctgtttcgc
      481 cgagtgaagc tactcagaat ggcaataacg ctgtctcaac tcctgaagtc gtaaacccgt
      541 cgtttttttc tcgaatcgtt cccttcgaga aaagccgggt cggagtcgcg ttgaccgccg
      601 cggtggtact tatcgcgatt gccggactgg tttatttcac cggtcgtagc aaggcgggcg
      661 atttgggtcc cgacgcaatt cagtcgattg cggtgttgcc ctttgttgac gacgccggag
      721 acgccgacgc tgaatacctc aacgacaaaa tcgccgagag ccttatcaac agcttgtcga
      781 agttgccgca actgcgcgtt gttccgagga gcgtggttgc cggttacaaa gggaagcagc
      841 ttgatccgcg ccaggttggt aaagacttaa acgttcgtgc ggttgtaatg ggaagcatgc
      901 gccggcatgg cgacatcatc agtattcagg cggacctcat agatctcgag aacgtctcac
      961 agctctgggg ccagcattac gatcataaga tcgccgacgt gattctcgtt caggaagaca
     1021 tttcacgcga catcttcgaa aacctccgtt tgaagttgaa cgtt
//
LOCUS       DATCGC010001545         1066 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_355930, whole genome shotgun sequence.
ACCESSION   DATCGC010001545 DATCGC010000000
VERSION     DATCGC010001545.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1066)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1066)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1066
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_355930"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..522)
                     /locus_tag="VIJ87_14775"
     CDS             complement(<1..522)
                     /locus_tag="VIJ87_14775"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: protein motif:HMM:NF015753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HEY5445700.1"
                     /translation="MTFNGWFQILLFIALIVAIAKPVGIFMTHLFNGERTFMHPVIRP
                     VERVIYRLTGVDEDREMRWTEYAAAMLLFSLVSLLLLYFIQRLQGYLPLNPQKLPGVD
                     SASSATGGFVASAFNTAASFTSNTNWQSYVPEVTMSYFTQMVGLAYHNFGSAATGIVL
                     AIALIRGVARKETK"
     gene            complement(816..>1066)
                     /locus_tag="VIJ87_14780"
     CDS             complement(816..>1066)
                     /locus_tag="VIJ87_14780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445701.1"
                     /translation="TDNVVASANRAGGQFGFEQQLNKKVTFAADWLTGKHGAGYFTPG
                     IVFKVGPRGTGYAGYSIGNMNAADGNHFFLLEVGYNFN"
BASE COUNT          296 a          286 c          249 g          235 t
ORIGIN      
        1 tttcgtttcc tttcgcgcga caccacgaat cagagcaatc gcgagcacaa tccctgtcgc
       61 agccgatccg aagttgtgat acgcaagccc aaccatttga gtgaagtaac tcatcgtcac
      121 ttcaggcacg tagctctgcc agtttgtatt gcttgtgaaa gacgcggcgg tgttgaaagc
      181 tgaggcaaca aatccgccgg tggcgctcga ggctgaatca acaccaggta gcttttgcgg
      241 attcagaggc agatagccct gaaggcgttg aatgaaatag agcagcaaca gcgaaactaa
      301 gctgaacaag agcatcgctg ctgcatactc ggtccaacgc atctctcgat cttcatcaac
      361 tcccgtgagt cgatagataa cacgctcgac cggacggata accggatgca tgaacgtccg
      421 ctcgccattg aaaaggtgag tcataaaaat acccacgggt ttcgcaatcg cgacgatgag
      481 cgcaataaag agcaggattt ggaaccagcc gttgaatgtc atttagaact tctccggacg
      541 caaaagcgca taagtcaagt agatgagcaa aagcgcggag ataactaaac tcgcagcagt
      601 ttcgagattc atcacactcc tatcgcaatc tttcgcagcc gcggacatag gcgagcgcaa
      661 taaggaagaa aatgattgtc agtccaataa aaactaaatc ctgcatgtgt ctccttagct
      721 attctctgtg caacctctgt atccgtgtcc tgtggtaagc atgcatcgcc gtccgatcac
      781 cacagagaca cagaggttgc acagagaaga acccatcagt tgaagttgta tccaacctcc
      841 aacagaaaga aatggtttcc atctgcagca ttcatgtttc caattgagta acccgcataa
      901 cccgtccccc ttggcccaac cttgaacacg atgcccggcg tgaaatagcc tgctccgtgt
      961 ttccctgtga gccagtcggc agcaaacgtg accttcttgt tcagttgttg ctcaaaacca
     1021 aattggcctc ccgctcgatt ggccgacgcc acaacgttgt cagtaa
//
LOCUS       DATCGC010001546         1522 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_355939, whole genome shotgun sequence.
ACCESSION   DATCGC010001546 DATCGC010000000
VERSION     DATCGC010001546.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1522
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_355939"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..524)
                     /locus_tag="VIJ87_14785"
     CDS             complement(<1..524)
                     /locus_tag="VIJ87_14785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445702.1"
                     /translation="MAIDFPASPTVGQEYTSGGMTYVYNGTGWTIKGGSTTALATNAY
                     VDAQDALKVAKAGDTMSGDLTISKTKPNVILDRPVGSPAEIFSKTGGLTRWRINLANG
                     LAESGGNVGSGFQIDRYDDAGNIIEAALKIDRATGYVTIGQTTIANAYGNLIIQAGAG
                     TGSPLIQGMKGGLVR"
     gene            complement(524..>1522)
                     /locus_tag="VIJ87_14790"
     CDS             complement(524..>1522)
                     /locus_tag="VIJ87_14790"
                     /inference="COORDINATES: protein motif:HMM:NF025253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0098024 - virus tail, fiber [Evidence
                     IEA];
                     GO_process: GO:0019062 - virion attachment to host cell
                     [Evidence IEA];
                     GO_process: GO:0046718 - viral entry into host cell
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber domain-containing protein"
                     /protein_id="HEY5445703.1"
                     /translation="DIGFGVGTPNLISFNAPSTVQVLNTTASTTPTTGALTVAGGLGV
                     GGGINATGTIRSFAKSNVLGNPNGAAFNAAVAQADANLLLYDGGGNNWCGMGIDLLGH
                     FWLRTGLSGSPVPTLAITTDQVVRVQNALPSNSPTTGALVVSGGLGVGGNINASSITC
                     DSAGDTVFSYMRNPAPSTGACYVAQNFNPSGTRYMLYMKVANGATVGTITSDGASAAY
                     NTSSGAELKEDLKSFDAGSIIDNTNVYDFAWKSTKERAFGVIAQQAVDVYPLAVTHTE
                     ASTEKGAERDEWWGVDYSKYVPVLLQELKALRQRVADLEGRTLDKPVVTTAPRGRK"
BASE COUNT          382 a          405 c          321 g          414 t
ORIGIN      
        1 cgaactaaac cacccttcat cccctgtata agaggcgatc ctgtgccagc accagcttga
       61 attattagat taccataggc gttggcaatt gtcgtttgac ctattgtaac atagccagtt
      121 gcgcggtcaa tttttagtgc cgcctcgatg atattgcctg catcatcata tctatcaatc
      181 tgaaaacctg atccaacatt tccaccgctt tctgcaaggc catttgctaa attaatccgc
      241 caacgagtaa gtccacccgt cttactgaat atctctgctg gactgccaac aggtctatct
      301 aatatcacgt tgggctttgt tttgctgatc gtcaaatcac cactcatagt gtcgccagct
      361 ttagcaacct tcaacgcatc ctgcgcatct acatacgcat tcgtcgcaag cgcagtcgta
      421 cttcctcctt taatagtcca ccctgtgcca ttgtacacat acgtcattcc acctgacgtg
      481 tactcttgac ctacagtagg tgaagcaggg aagtcgattg ccatcacttc ctcccacgtg
      541 gtgcagtggt gacaacaggc ttatcaagtg tgcgaccttc aaggtctgca acacgttgtc
      601 tcaatgcttt cagctcttgc aacaacacgg ggacgtactt tgagtagtca acaccccacc
      661 actcatctct ctcagcaccc ttctcggtcg atgcctctgt atgtgtgact gcgagcggat
      721 atacatcaac agcctgctga gcgatgacac caaatgcgcg ctctttagta gacttccatg
      781 cgaagtcata cacattcgtg ttgtctatga tgctgcctgc gtcgaatgat ttgaggtctt
      841 ctttaagctc tgctcctgag gaggtgttgt aggcagcact tgcgccgtct gatgttattg
      901 ttcctactgt cgcaccattg gctactttca tataaagcat ataacgagtg ccagacggat
      961 taaaattctg tgcaacataa catgcgcctg tgctgggagc tggattgcgc atatatgaaa
     1021 atacagtatc acctgcgctg tcgcaggtaa tgctgctagc gttaatattc ccaccaacac
     1081 ccaaaccacc agatacaacc aacgcacctg ttgttggtga gttggaagga agggcgttct
     1141 gaacacggac aacttgatca gttgtaatag caagtgtcgg aactggtgat ccgcttaaac
     1201 cagtacgtag ccagaagtga cccagtaaat caattcccat tccacaccaa ttgttgccac
     1261 ctccatcata cagcaacaag tttgcatcag cttgtgcgac tgccgcgttg aatgccgcgc
     1321 cattgggatt gccgagtaca ttagatttgg caaatgatct gattgtacca gtagcattaa
     1381 tcccaccacc aacacctaat cctcctgcaa cagtcaatgc gcctgttgta ggtgttgttg
     1441 aagcggtcgt gtttaacacc tgaactgttg aaggtgcatt aaagctgata aggttgggtg
     1501 tacccacgcc aaaacctata tc
//
LOCUS       DATCGC010001547         1054 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_455986, whole genome shotgun sequence.
ACCESSION   DATCGC010001547 DATCGC010000000
VERSION     DATCGC010001547.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1054)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1054
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_455986"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(194..>1054)
                     /locus_tag="VIJ87_14795"
     CDS             complement(194..>1054)
                     /locus_tag="VIJ87_14795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445704.1"
                     /translation="NVGVDPASIDVVAIAIRFHKPAADLSFVPPDLLAVVSGDFSADS
                     MLSLAGAFLQDNARTEKYSSKTLTIMKIDPIAEAAQKNPLLKSFVEMGAVALNSNTLV
                     VGNVDYVKAAVDASEGNGRISSEVLKSLLRDPNALVSMAGSPLTAFAKSFGMMGTQTT
                     KRENCPTRFGDFYAAITMDGTNFNLRGAMNTDNPDTAKIINGLLASVLQPAIDSIPDK
                     EAQAVLKGIKMLPKENEIVWEANVPEQVVATMLREQTQAKPSPQTEAKPTETSTKKPL
                     AKPRRRTRRK"
BASE COUNT          226 a          284 c          264 g          280 t
ORIGIN      
        1 atcgtatatt tccttgtccg ggagatcctc accggtgact gcgagctctg agctgccaag
       61 gtgctcggtc agcacgtcgc cgtaaggcgc caacaagttg attatttctc ggtacaaata
      121 ccaatcatct cgtccgccac gaattgaacc tgcgaaatag atcttcatag cgaacgcgcc
      181 gggcaaaaat gcgctacttc cgacgagttc ggcgtcttgg tttggctagc ggcttctttg
      241 ttgaagtctc cgttggtttc gcttccgttt gcggtgatgg tttcgcttgc gtttgctcgc
      301 gaagcatcgt tgccaccact tgttccggca cattcgcttc ccaaactatc tcgttttcct
      361 tcggcagcat cttgatacct ttcaacactg cctgggcctc cttatctggg atcgagtcga
      421 tggcaggttg cagaacactc gcgagtagcc cgttgataat cttggccgtg tcaggattat
      481 cggtgttcat tgctccacga agattgaagt tcgtgccgtc cattgtgatc gcagcgtaga
      541 aatcgccgaa gcgagtaggg cagttttcgc gtttcgtagt ttgggtcccc atcatcccga
      601 agcttttagc gaaagcggtc aacggagaac ccgccatact caccaacgca ttaggatctc
      661 gaagcagtga cttcaggact tctgaactaa ttcgtccgtt gccttccgat gcatccaccg
      721 ctgccttcac gtagtcgacg tttccaacta cgagcgtatt tgagttgagt gccacggcac
      781 ccatttcgac gaacgacttc agtaacgggt ttttttgcgc tgcttcagcg ataggatcaa
      841 tcttcatgat ggtcaacgtc ttggaactgt atttctcggt acgggcgttg tcctgcagga
      901 aggcgccagc taacgacagc atcgaatcgg cactgaagtc gccgctaact acggccaaaa
      961 gatctggcgg tacaaaactc aaatcagcgg ctggcttgtg aaatctgatc gctatagcaa
     1021 cgacatcgat acttgcagga tcgacaccga cgtt
//
LOCUS       DATCGC010001548         1285 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_154076, whole genome shotgun sequence.
ACCESSION   DATCGC010001548 DATCGC010000000
VERSION     DATCGC010001548.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1285)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1285)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1285
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154076"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(118..1158)
                     /locus_tag="VIJ87_14800"
     CDS             complement(118..1158)
                     /locus_tag="VIJ87_14800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445705.1"
                     /translation="MRKFLTFVLLAALLLASQSCRIVKTLTGEDQNLKKVGVLWSDVP
                     KMDGLTSSEEGMPIYVKLLMRTALNNLYRLNKKNEDRTPGTGDWAVFSTTKSPQDVQG
                     FYTNDRMTQFGKWEASKNSTCLNGSEYRFSGVACVFAKSENKHGIGLLIVAAQDEQKK
                     QTNVFFVRVETDETAPGNSPASPAASPRPTRGEIKPLNGTAPYEIEKRSLPAGTNLDE
                     LLPKQVGPYIRTLLEKSDQRGVTPSSIEIDGNSVYATYAEGNKEIFVEFAVSNTPMNA
                     QTALDVAASEVTEQFPTDPRFGSIGTEPSYLKVDNQSGAFFAWTRGSYYFSANAKGGP
                     ADLDAFMQSFPY"
BASE COUNT          295 a          327 c          334 g          329 t
ORIGIN      
        1 ggcgatccac gaaatcacac gaaatcacac gaacaagaaa ctgactgtaa tccgagtttt
       61 gacacagtct ccgccgttgg tggaccagaa gacatctcag acctcagaag gtaatcgcta
      121 atacggaaac gactgcatga acgcgtcaag atctgccggg ccgcccttag catttgccga
      181 aaagtagtaa ctgccgcgtg tccaggcgaa gaacgcaccc gattggttat cgactttcaa
      241 ataactcggc tcagttccaa tcgagccgaa acgcgggtca gtagggaact gctcagttac
      301 ttcgctcgcc gccacatcga gcgcggtctg cgcgttcatt ggggtgttcg ataccgcaaa
      361 ctcgacaaag atttctttgt taccttctgc gtatgtcgcg taaaccgagt tgccatcaat
      421 ttcgattgat gacggagtga caccgcgttg atcggatttc tcaagcagtg tgcgtatgta
      481 aggaccaacc tgtttcggca agagttcgtc gagatttgta ccggcgggca acgaacgttt
      541 ttcgatttcg tagggtgcag ttccgttcaa cggtttgatt tcacctcgag tcggtcttgg
      601 actagcggcc ggactcgcag gtgaattacc tggagctgtt tcatccgttt cgacgcgcac
      661 aaagaaaacg ttcgtctgtt tcttttgctc gtcctgcgca gcaacgatca gcaaacctat
      721 tccatgtttg ttctcgctct tggcaaagac gcaggctaca ccggagaagc ggtattcact
      781 gccgttcaaa caagtcgagt tcttactcgc ttcccatttg ccgaattgtg tcatccgatc
      841 gtttgtgtag aagccttgaa cgtcctgagg tgatttggtc gttgagaata cggcccagtc
      901 gcccgtgcca ggtgtgcggt cctcgttctt tttgttaaga cggtagaggt tgtttagtgc
      961 ggtgcgcatc agaagtttga cgtaaatcgg catgccttct tcagatgagg tgaggccgtc
     1021 catcttcgga acgtcgctcc acaagacgcc aacctttttt agattttggt cttctcccgt
     1081 cagagtcttg acgatgcgac atgactgaga agcgagaagt aatgccgcga ggagaacaaa
     1141 cgtaagaaac tttctcatac gtaactcctt ggaaaaggga gggcctcgat gagttgctcc
     1201 tccttggagc gcggtgcctc gtcaccgctt tgttagagcg gatctttcga atttaccaaa
     1261 gcggtgacga ggcaccgcac tccca
//
LOCUS       DATCGC010001549         1118 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_254648, whole genome shotgun sequence.
ACCESSION   DATCGC010001549 DATCGC010000000
VERSION     DATCGC010001549.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1118
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_254648"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..591
                     /locus_tag="VIJ87_14805"
     CDS             <1..591
                     /locus_tag="VIJ87_14805"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY5445706.1"
                     /translation="IRFLDGLRDEDVASVYRFDSSVERIQEFSGGRDLAPIGYAVRAK
                     GMTTLNDAIVQAAKVLADRPETRRAIVILSDGMDTFSKATSSKALETALSVGASIYAV
                     DMSALDTPGFANRQSAMQLKGFAEKTGGRFIATPGGQALRDAFTEIAEELGHQYTISY
                     RPTNTARDGKWRALEVKVNREGLDVRTRKGYRAPKK"
     gene            complement(617..>1118)
                     /locus_tag="VIJ87_14810"
     CDS             complement(617..>1118)
                     /locus_tag="VIJ87_14810"
                     /inference="COORDINATES: protein motif:HMM:NF019121.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HEY5445707.1"
                     /translation="TLAEAIDLAAEYDRKIIVEEEVVGREIECAILGNDEPQASLPGE
                     YVIYEESARFLDYTEKYASTGRVSFVVPAPLSKTITARIQRMAIQAFQAVDGAGLARV
                     DFFLQQKGGELVINELNTLPGLTEVSGYPKMWEASGLSFTQLLEKLIELAFERHREKA
                     LTKTTR"
BASE COUNT          278 a          280 c          287 g          273 t
ORIGIN      
        1 attcgttttc tcgatggtct gcgcgacgaa gatgtagctt cagtttatcg attcgattca
       61 agcgtcgagc ggatccagga gttttctggt gggcgtgatc tcgctccaat aggctatgca
      121 gttcgagcta agggaatgac cacgctgaac gacgcaattg ttcaggccgc aaaggtattg
      181 gcggaccgtc cagagactcg aagagctatt gtcattcttt ctgatggaat ggatacattt
      241 agtaaggcga cttcaagcaa agccctggag actgcactca gcgtgggcgc tagcatctat
      301 gccgtggaca tgtcggctct ggacactcct ggtttcgcca atcgtcagag tgccatgcag
      361 ctaaaaggct ttgccgaaaa aaccggagga cgatttatcg caactcccgg cggccaggct
      421 ttgcgtgacg cgtttactga aatagcggag gagctggggc accaatacac aattagttat
      481 cgccccacaa atacagcccg agatggaaag tggcgagccc ttgaagttaa agtaaaccgt
      541 gagggattgg atgtaaggac ccgcaaggga tacagagcac cgaagaaatg attttacctt
      601 aagagatact tgaagtttag cgagttgttt ttgtaagcgc cttctcacgg tgacgctcga
      661 aagcaagctc aatcaatttc tcaagtagct gagtgaaact tagccccgac gcttcccaca
      721 tcttcggata accagagacc tcagtgagtc ccggcaaagt attcaactca ttgatgacga
      781 gttccccgcc cttttgttga aggaaaaaat ctacccgagc gagaccagcg ccatcgaccg
      841 cttgaaaagc ctggattgcc atgcgttgaa tcctggcggt tatggttttc gaaagtggag
      901 cgggcaccac gaaacttacg cggcctgtgc ttgcatactt ctctgtgtag tctaagaacc
      961 tggctgactc ttcgtagatc acgtactcgc ctggcaggct tgcttgcggc tcatcatttc
     1021 cgagaatcgc acattcgatc tcacgaccca caacttcttc ctcaacgata atcttgcgat
     1081 cgtactctgc tgccagatcg atcgcttcgg caagtgtt
//
LOCUS       DATCGC010001550         2037 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_122107, whole genome shotgun sequence.
ACCESSION   DATCGC010001550 DATCGC010000000
VERSION     DATCGC010001550.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2037)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2037)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2037
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122107"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..281)
                     /locus_tag="VIJ87_14815"
     CDS             complement(<1..281)
                     /locus_tag="VIJ87_14815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445708.1"
                     /translation="MKLTLQRFRAVLNIVLPGVFVLAVNSGFAVAQSAWVPTNVGVKG
                     QDLNTVYFLDSKRGWVGGDAGYLSRTDDGGQTWTRQTVGTNEAINDIYFR"
     gene            complement(469..>2037)
                     /locus_tag="VIJ87_14820"
     CDS             complement(469..>2037)
                     /locus_tag="VIJ87_14820"
                     /inference="COORDINATES: protein motif:HMM:NF012321.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY5445709.1"
                     /translation="VSFETEKGKELQDFQLFYTISKEDFGLTLLTHREAGRDGYFLMM
                     ISPKDDWSEQEYSAKDVVFVVDTSGSMAEEGKMEKARSALLYGIRILRPQDRFNVISF
                     AGEEHLMEAGLVAADEQGRQRGEAFVKSLKPVGGTNINQSLLASLRQFKDGDRPKILV
                     FMTDGLPTVDETNVSSIVDNVRKSIKPGIRLFTFGVGYDVNTTLLDKIAAENGGMADY
                     VEPKEDLEVKVSNFFTKVNYPVLTDLNLDFGGVQTDLIYPRGIPDVFRGSQVTLIGRY
                     SNPAALEAIKLKLSGKANSALKSYTYDSLRFPLREDANDYLPRLWATRRVGWLMEQIR
                     ANGEQKELRDEVVDLGTRYGIVTPYTSYLALEGRETSLNVLAPRQGQVMDLPMNRRGA
                     VNGGLSGAPKAAPPGVGQASETVTVTSGAEAVALSKATRDQIQEVRVKDDDAKSAMRR
                     IGGKTFYLINDVWTDSEFKADAKLPETTLTFGSEAYFDLIKQKPKLADYFSLGERVVV
                     VFEGRVYRVNAAAP"
BASE COUNT          470 a          584 c          474 g          509 t
ORIGIN      
        1 cgaaagtaga tgtcgttgat cgcttcgttt gtgccgactg tttgccgggt ccacgtctga
       61 ccgccgtcat ccgtccgact caaatatccg gcatcaccac caacccaacc acgtttacta
      121 tcgagaaaat agacggtgtt gagatcctgt cccttcacac cgacattcgt tggcacccag
      181 gctgactggg ccaccgcaaa gccactgtta actgccaaaa caaaaacccc aggcaacaca
      241 atattcaaca cggctcgaaa tctttgtagt gtgagcttca tagtcgtttt taagtgacac
      301 tccgtcacaa cgggaacggg attcactact ttgggggttg gagttttgta ccttagtttg
      361 aactcttgga caaggtttat gaacaaaact cgcctgctcg caaaaaggcc acgcgcttag
      421 ttgacgcgcg tgaccttttc gttcgctgct ctctcacaac agcatggttt acggagctgc
      481 ggcgttaact cgatacaccc gaccctcgaa aacaactacc acgcgctcgc cgagcgagaa
      541 gtaatcagcc agtttcggct tttgcttgat caagtcgaag taagcctcac tgccaaacgt
      601 caaggtcgtt tccggaagtt tggcatcagc cttgaactca gagtcagtcc aaacgtcatt
      661 aatgagatag aacgtcttac cgccaattct tcgcatggca ctcttagcat catcgtcctt
      721 gactcgcacc tcttgtattt ggtcgcgtgt ggccttgcta agcgccacgg cttccgcgcc
      781 gctcgtgacg gttacagtct cgctcgcttg gccaacccca ggaggagcag ccttcggagc
      841 accactgagt ccaccgttaa ctgcgccccg ccgattcatc ggtaaatcca tgacctgacc
      901 ctgacgtggc gccaagacgt ttagactcgt ctctctaccc tccaacgcaa gatacgacgt
      961 gtatggggtc acaatgccat atcgcgttcc gaggtcaaca acttcgtcac gcaactcctt
     1021 ctgttctccg tttgctctga tctgttccat cagccaacca acgcgccgcg ttgcccataa
     1081 cctcggcaga taatcgtttg cgtcctcgcg caacggaaag cggagactgt cgtaggtgta
     1141 cgacttgagt gcggagttag ctttgccgct gagtttgagc ttgattgctt cgagtgcggc
     1201 cgggttgctg tagcgaccga tcaaagtgac ttgcgaacca cgaaatacgt caggtattcc
     1261 acgcggataa atcagatccg tttgtactcc tccgaagtcg agattcagat cagttaagac
     1321 tggatagttg accttggtga agaagttgga aaccttcact tccaggtctt ccttcggttc
     1381 tacgtagtca gccatgccgc cgttttcggc tgcgattttg tcgagcaagg tcgtgttgac
     1441 gtcgtagcca acaccgaacg tgaacagccg aatccccggc ttaatcgact ttctaacatt
     1501 gtcgactatg ctggaaacat tggtttcatc gacagtcggt agcccgtctg tcatgaagac
     1561 cagaatcttg ggcctatctc cgtctttgaa ttgacgcagc gacgccaata gcgactgatt
     1621 gatatttgtt ccgccaaccg gcttcaacga cttcacaaac gcctcacctc tttggcgacc
     1681 ttgctcgtcc gcagcaacca gtccagcttc catcaggtgt tcttcacccg caaaagaaat
     1741 cacgttgaat ctatcctgcg ggcgaaggat tcggatgcca tacagcaagg cagagcgcgc
     1801 cttctccatc tttccttctt cggccatgga acccgaagta tcgaccacga agactacgtc
     1861 tttcgctgag tactcctgtt cagaccagtc atccttagga gagatcatca tcaggaaata
     1921 tccgtcacga ccggcttcgc gatgggtcag cagcgtcaga ccaaaatctt cctttgagat
     1981 cgtgtagaag agctgaaagt cctggagctc ttttcctttt tcagtctcaa acgaaac
//
LOCUS       DATCGC010001551         2814 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_122144, whole genome shotgun sequence.
ACCESSION   DATCGC010001551 DATCGC010000000
VERSION     DATCGC010001551.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2814)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2814)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2814
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122144"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..427)
                     /locus_tag="VIJ87_14825"
     CDS             complement(<1..427)
                     /locus_tag="VIJ87_14825"
                     /inference="COORDINATES: protein motif:HMM:NF012610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEY5445710.1"
                     /translation="MSRRKSLLKKRRRRSIIGFEMIRLNRSAAEPLHDQLYRQIQDEL
                     RSGGFNGDAGRIPSSRILAAELGISRLTVNLAFSKLHAEGYLRSKPRSGTFVAHPLPE
                     TFLRADKPKALPQIEERPRISSRVRAIPDRRVGKQFDLGA"
     gene            622..1146
                     /locus_tag="VIJ87_14830"
     CDS             622..1146
                     /locus_tag="VIJ87_14830"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY5445711.1"
                     /translation="MKSVGITFVAVMVGVASVVAGNSVLQGVVKDARGYPLRSAHIRI
                     EARNGGRLLATVKTDENGHYILRDLVAGTYQVALIVNGALKACINNTTVESGESIQLN
                     FDLTHTRASVTVKEGIHKVWIPAFTGSRLPGRWVEVDDSGAWAAEASTNNIVRVSGEE
                     LQRTIHSLDIKRGQ"
     gene            complement(1283..1750)
                     /locus_tag="VIJ87_14835"
     CDS             complement(1283..1750)
                     /locus_tag="VIJ87_14835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445712.1"
                     /translation="MSTADFKARKLASVCCAAELVTRFMNYRTLTIAMALVAVRVVVV
                     FASAQPQAHDTVFYKGKTAGLRIVFGFNHEHVEASNLKVTESVSGKTTRFYLSGRDGQ
                     TPTDRIRFAPAKGAKKEILLEMDPFGNPPSHIKGSYTAAGKVIPFILTKRKRH"
     gene            complement(1915..2265)
                     /locus_tag="VIJ87_14840"
     CDS             complement(1915..2265)
                     /locus_tag="VIJ87_14840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445713.1"
                     /translation="MKFRFFLFVLLVSVANAFGSDLDFNLVNQTGRSFEGLYITASDN
                     KDWDANILLGGKVLAAGGSIQVRFKSEANSETWDFNLIDDEGLSVTFDKVKLAGIDMV
                     TLKDVNGQITAEIE"
     gene            complement(2275..2553)
                     /locus_tag="VIJ87_14845"
     CDS             complement(2275..2553)
                     /locus_tag="VIJ87_14845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445714.1"
                     /translation="MLITAFLVAGCAETSNALLLPGEVVVYVGDRPYPGDFDPYYNQP
                     KIYRQPRYYTSTSKKYKGKRVFKTTKVKNQYGQTVYKKTSSHKKKKKK"
BASE COUNT          676 a          703 c          729 g          706 t
ORIGIN      
        1 gtgctccgag atcgaactgt ttgccgacgc gtcgatctgg aatcgccctc acccggctgg
       61 aaatgcgggg ccgctcctcg atctgcggca gtgctttcgg tttatcagct ctcaaaaagg
      121 tttcgggcaa tggatgcgcc acgaaggttc ccgatctcgg cttggagcgg agatatcctt
      181 ccgcgtgaag cttcgaaaat gcgaggttaa cggttagtct cgagatgccc aactccgcag
      241 caaggatgcg agacgaagga attcgaccgg catcgccatt gaaaccgccc gaccgcaatt
      301 catcctggat ctgtcggtac agttgatcat gcagtggttc ggcggcggaa cgattgagcc
      361 gaatcatctc gaatccgatg attgaacgtc gccgtctctt tttcagaagc gacttcctac
      421 gcgacatgat ccctacccta ctttgcgatt aactttggag tttgtgtctc cgttacaaca
      481 acatcgatca catttgccag atcaacaact gtcatccaac cgtggagata aggccgatta
      541 gcgacgcaaa ctggccttat cgcaattcaa taactggatc ttgtgctgcg tgccacattc
      601 gagtcttggt ttgttatgtt catgaaatca gtcgggatca ctttcgttgc ggtaatggtt
      661 ggtgtcgcaa gtgtagtagc cgggaactcg gtgcttcaag gtgtcgtcaa ggacgccagg
      721 ggatatcctc ttcgcagcgc gcatatccga attgaagcga gaaatggcgg caggttgctt
      781 gcgaccgtta aaacagatga gaacggtcat tatattttaa gagatctggt agcggggact
      841 taccaggtgg ccttgatcgt gaatggtgcc ttaaaggcat gcatcaataa cacaacggtt
      901 gaatcaggtg agtcgataca gcttaacttc gatctcactc acacgcgcgc atctgtaacc
      961 gtaaaggaag gtatacacaa ggtttggata ccggcgttta cgggaagtcg tctgccaggt
     1021 cgctgggtgg aagttgatga tagcggggct tgggcagcag aagctagcac caacaacatc
     1081 gtgcgggtta gtggcgaaga acttcaacga acaattcaca gcctggacat taagagaggg
     1141 caatagacca gccggtgagt ctgcctgcca cgcgtggcga cggtaagcat tttgctgtgc
     1201 agattcctca ccgctcaact gccgcttcaa gagattgtca gtgatcaatt ccgaatcctt
     1261 cacgcagcca aatgcctgat aatcagtgcc tcttcctttt cgtgagaatg aacggaataa
     1321 cttttccggc ggccgtataa ctacccttga tatgggaggg aggattgcca aaaggatcca
     1381 tctctaacaa aatctctttt tttgcgccct ttgcaggagc aaatcgtatc ctgtcggttg
     1441 gtgtctgtcc gtctctacct gacaggtaaa acctcgttgt tttaccgctc acagattcgg
     1501 tgaccttaag attgcttgcc tccacgtgtt catgattgaa tccaaacacg attctcaggc
     1561 ccgccgtctt ccctttgtag aagacggtgt cgtgggcctg tggctgagcg gaggcgaata
     1621 caacgaccac gcgaacagcg acaagcgcca tagcgatagt caatgttcga tagttcatga
     1681 agcgagtcac aagctcagcc gcgcagcaaa cagaagcaag ctttcgagct ttgaaatccg
     1741 ctgtgctcat gcgcctcgat cattctgcat gattgacgat gaagccacaa cgggcggaca
     1801 agtgcttaaa actcggtgga atcgagacgc tcccgtgagc tagcgccctg aatcgtgtaa
     1861 ctctactagc gactgcgctg caaatgttcg ccccgcaatc gaggttagtg gcacctactc
     1921 gatttccgca gtgatctgac cgttgacgtc cttcaacgtt accatatcaa tgcctgccag
     1981 cttcaccttg tcgaaagtta ccgagagtcc ctcgtcgtct atcaggttaa aatcccaggt
     2041 ttctgagttt gcttcgctct tgaagcgaac ctggatactc ccaccggccg cgagcacttt
     2101 tccgccgaga agaatgtttg cgtcccaatc tttgttgtca gaagcggtga tatacagacc
     2161 ttcgaagctt cgcccggtct ggttaacgag attgaagtcc agatcggatc cgaatgcgtt
     2221 tgcgacgctt accagaagca cgaagagaaa gaaacggaat ttcatgagtg ggagctactt
     2281 cttctttttc ttcttgtgag agctggtctt tttgtaaacc gtctggccgt attggttctt
     2341 cacctttgtt gtcttgaaca ctctcttgcc tttgtacttc ttgcttgttg aggtgtaata
     2401 gcgtggttgg cggtagattt tcggttggtt gtagtatgga tcgaaatcgc cgggataagg
     2461 gcggtcgccg acgtacacaa cgacttcgcc tgggagtagc aaagcattac tagtttcagc
     2521 acaacccgcg acaagaaaag ccgtgattaa catgtaggcg aagcaccgaa gaatcacggt
     2581 ttccgtctat cagggacgtt tcggtgagtc aaagaaaaat tagcttgcgg aaaattactg
     2641 ttatcgagtt ggaattctat ccaactcaga caagcgtttt cgcaaccagc taagagaggc
     2701 acctgcaggg cactcgcagt tgtgggcgag atggactcag atgtacaagc tattattaaa
     2761 tcgctggcag tgccgttcgc gacccacgcc gcatccgccc attcacccaa acag
//
LOCUS       DATCGC010001552         1294 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_456099, whole genome shotgun sequence.
ACCESSION   DATCGC010001552 DATCGC010000000
VERSION     DATCGC010001552.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1294)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1294)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1294
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_456099"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            124..1056
                     /locus_tag="VIJ87_14850"
     CDS             124..1056
                     /locus_tag="VIJ87_14850"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucuronic acid decarboxylase family
                     protein"
                     /protein_id="HEY5445715.1"
                     /translation="MRILITGGAGFIGSHLSERLLGEGHEVLCLDNFFTGRRENIMHL
                     LDNPRFELIRHDVTEPILLEVDQIYNLACPASPVHYQYNPVKTVKTSVMGAINMLGLA
                     KRVRARILQASTSEVYGDPLLHPQKEDYWGNVNPIGLRSCYDEGKRLAETLMTDYHRQ
                     NKVDVRIARIFNTYGPRMLEDDGRVVSNFIVQALRGEPLTLYGEGQQTRSFCYVSDLL
                     EGLIRLMNTADLHQPVNLGNPGEFTIKQLGEEVMKIVGNDCGFTYLPLPEDDPRQRKP
                     DITRAQTVLGWNPTIPLHEGLTKTVDDFKNRSHI"
BASE COUNT          330 a          318 c          332 g          314 t
ORIGIN      
        1 agccggtgaa ctactggcaa ttttcacagc cgtcggcaag agtacaaagg gagtctgata
       61 gtatcgtcgt acatacacga aatccgaatt ccgaaatccc aaatccgaaa tcaggttaaa
      121 catatgcgta tactaatcac aggtggtgcg ggctttatcg gttcacatct ttccgagcgt
      181 ttacttggcg aagggcatga ggttctttgc ctcgataact tcttcacggg tcgtcgcgag
      241 aacatcatgc atctcctcga taacccgagg ttcgagctga ttcgacacga cgtcaccgaa
      301 ccgatccttc ttgaagtgga tcaaatctac aatctggcct gtcccgcttc gccggttcac
      361 tatcaataca atccggtgaa aacggtaaag acaagcgtga tgggcgcaat caatatgctg
      421 ggccttgcga aacgtgtgcg ggcacgaatt ctacaagcat cgacttccga ggtgtatggg
      481 gatccgttgc ttcatcctca gaaggaagac tactggggca acgttaatcc tattggtttg
      541 cggtcgtgct atgacgaggg aaaacgcctg gctgaaacgt tgatgaccga ctatcaccga
      601 cagaacaaag tggacgtcag gattgctcgc atcttcaata cgtacggacc gcgtatgttg
      661 gaagatgatg gacgcgtggt ctcgaacttt atcgtacagg cattgcgtgg cgaaccactg
      721 actctttacg gcgaaggtca gcagacgcgc tcgttttgtt acgtaagtga tttgttggaa
      781 ggtctgattc gcttgatgaa taccgccgat cttcatcagc cggtcaatct gggtaacccc
      841 ggggaattta caatcaagca actaggcgaa gaagtgatga agattgttgg aaacgattgc
      901 ggcttcactt atctgccgtt gccggaggac gatccacgcc agcgcaaacc tgatatcact
      961 cgagcgcaaa cggtgttggg ttggaacccg acaattccat tgcacgaggg actcacgaaa
     1021 actgtggacg actttaagaa tagatctcat atttaagatc tcagataggc cggcggagaa
     1081 cagacttcaa tttgagatct gatcccccca ctttcctttg cgcattctcc tcctgaacca
     1141 gtgtttctat cctgacgtag ttgctacggc tcagcacctc actgatctag cgcggggact
     1201 tgttgatcgt ggacacgaag tcacggtgat aacaagcgac cgaggctacg acgatccgag
     1261 tagacgcttt ccccattccg aagtttggaa gagc
//
LOCUS       DATCGC010001553         1256 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_287890, whole genome shotgun sequence.
ACCESSION   DATCGC010001553 DATCGC010000000
VERSION     DATCGC010001553.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1256)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1256)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1256
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287890"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..802)
                     /locus_tag="VIJ87_14855"
     CDS             complement(<1..802)
                     /locus_tag="VIJ87_14855"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEY5445716.1"
                     /translation="MNYRQFGRTDWNVSDVGYGMWGMGSWSNSDDNESLSSLQASVDL
                     GCNFFDTAYAYGEGRSENLLGQIVRSNPGKHLYTATKVPPKNLQWPALPDSTLMESYP
                     PDHVEEFVHRSLENAGLQQFDLVQLHTWSDDWMRDDRWFYKLDDLRSQKLLNAIGLSI
                     NRWEPWNGVRAVQSGQVDAVQVIYNIFDQNPEDELFPACREHKVAVIARVPFDEGTLT
                     GTLTKESTWPEGDWRNNYFTPENLNPSVDRAEELKKMLGEWNQEQSTNI"
BASE COUNT          273 a          329 c          311 g          343 t
ORIGIN      
        1 ggatgtttgt cgactgttct tggttccact cgccgagcat cttcttgagt tcttcggctc
       61 ggtcgacgct ggggtttaga ttctcaggcg taaagtagtt gttgcgccaa tcgccttccg
      121 gccacgtgct ctccttcgtt agcgtgccgg ttagtgttcc ctcgtcaaat gggacgcggg
      181 cgatcactgc gactttgtgc tcgcgacagg caggaaaaag ttcgtcctcc gggttctgat
      241 cgaagatgtt gtagataact tgaacggcat cgacttgtcc gctttgcact gcccgcacac
      301 cattccacgg ttcccaacga ttgatactaa gtccgatcgc atttaagagc ttttggcttc
      361 tcaaatcgtc gagtttgtag aaccagcgat cgtctctcat ccaatcgtca ctccaggtgt
      421 gaagttgcac gaggtcgaac tgctgcagtc cggcattctc tagacttcgg tgtacaaact
      481 cttcaacgtg gtccggcgga tacgactcca ttagtgtcga gtcaggaagt gcaggccact
      541 gcaaattctt tggcggcact ttggtggccg tgtagagatg tttcccggga tttgatctga
      601 cgatttgtcc gagcaggttt tcactgcggc cttcaccgta ggcgtatgca gtgtcgaaaa
      661 aattacagcc cagatctact gacgcttgaa gcgagctcag cgattcattg tcgtcggaat
      721 tagaccagct acccatgccc cacattccgt atcccacatc gctaacattc caatccgtcc
      781 gtccaaattg tctgtagttc attcggcgct cctgagtaat tcaagttgat atgaagacag
      841 ttcatcatag cgcatatgtc cgatgtctgg tgatgtccga tatgctttag agtctcttgc
      901 aaaagtctga aatcgtcacg ttcgcaacca gagcgcgggc ccccctctca ttctcccaaa
      961 gcttcagctt ggggttatgg tgcccgccca ttactaagaa accgtttcaa cggttttgcc
     1021 cagtgtgcga acgaatccga cgccaatgaa actttggcag ggagcttggt tggctcgaaa
     1081 ctcgtaaacc gttaaaacgg ttcctcaaaa ttggacccta ctgtaacccc aagctgaagc
     1141 ttggggagaa tgagactttt gcaagagact ctttagcttg tcgttgacac caaaatgcgc
     1201 tggcatcact ttgatcgcgc gttgttcttc cgtaagaggc tcttaagcag atcgga
//
LOCUS       DATCGC010001554         1220 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_387600, whole genome shotgun sequence.
ACCESSION   DATCGC010001554 DATCGC010000000
VERSION     DATCGC010001554.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1220)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1220)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1220
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_387600"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..791)
                     /locus_tag="VIJ87_14860"
     CDS             complement(<1..791)
                     /locus_tag="VIJ87_14860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445717.1"
                     /translation="MSAAQKAIFVREVQNLSEMMEVELLQKEVWGVEDREILPALAMV
                     PMREVGALLLGAFDAEQLIGFSFAFPGLENGHLILHSDMLAVKPAYRSLGLGLQLKLA
                     QRLYALEKGINTITWTFDPIQALNANLNFAKLGVVSDRYLVNYYGETTSFLHSTGTDR
                     LWVTWKLRSKWVTDRLNGKAADFEENISNILKVGHTLEPIVLDRRDSHSLFIDVPIDF
                     NSLVKNNRELAILWREATRQAFTNALADGFLVQDFQLNKREQPHSG"
     gene            complement(801..>1220)
                     /locus_tag="VIJ87_14865"
     CDS             complement(801..>1220)
                     /locus_tag="VIJ87_14865"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5445718.1"
                     /translation="LNTPPDEPTQLHVMTEHDLKDLKVLLVEDVEDTRLFMRLELEHH
                     GFIVIEAADGKTAVELAEREKPEVILMDLTLPVMDGFDATKLIRQSDQLKNVPIIAIT
                     AHSETNFRDGAKDSGFDAYVTKPIDINWLKELITGLL"
BASE COUNT          297 a          300 c          290 g          333 t
ORIGIN      
        1 cccgagtgtg gctgctctct cttattcagt tggaaatcct gcaccaaaaa tccatccgca
       61 agagcattcg taaaagcctg ccgcgttgct tcacgccaca aaatagcaag ctctcgattg
      121 ttcttgacga gtgaattgaa atctattggc acatcaatga agaggctgtg agagtcacgc
      181 ctgtccaaaa cgatcggctc gagtgtatgt ccaaccttga gaatattcga aatgttttct
      241 tcaaaatccg ctgctttacc attaagtcga tcagttaccc acttgcttct gagtttccat
      301 gtgacccaca gccgatccgt gccggtgctg tgtaaaaagc tagttgtttc tccgtagtaa
      361 ttgactaaat agcggtctga gacgacacct agctttgcga aattaagatt agcgttcaat
      421 gcctgaatcg gatcgaatgt ccaggtgatc gtattgattc ctttttctaa cgcgtaaagg
      481 cgttgcgcca attttaactg cagaccaagt ccaagtgagc gatatgctgg tttcactgcc
      541 agcatatcgg agtgcaaaat gaggtggcca ttttccaaac cggggaaagc gaaagaaaag
      601 ccgatcaatt gctcagcgtc aaatgcgcca agtaagagcg cgccgacttc tctcatggga
      661 accattgcga gagcaggcag tatctcgcgg tcttcaacgc cccaaacctc cttttgaagt
      721 agctccacct ccatcatctc tgagaggttc tgaacttcac ggacaaaaat tgctttttga
      781 gcggcactca tcgcgcggga tcacagcagt ccggtaatca attctttgag ccagttgata
      841 tcgataggct tggtaacgta ggcatcaaag cccgagtctt ttgcgccatc ccgaaagttt
      901 gtctccgagt gagctgtaat ggcgatgata ggtacgttct tcagttggtc actttgtcta
      961 atcaacttgg ttgcgtcgaa gccatccatc accggcagtg tgaggtccat tagtatcact
     1021 tccggttttt cacgctcggc gagttccacg gcagttttac catccgcagc ttcgatgaca
     1081 atgaatccgt ggtgctcgag ttcaagacgc ataaagagtc tcgtgtcctc gacgtcctcg
     1141 accagcaata cttttagatc tttcagatcg tgttctgtca tgacgtgtag ttgtgtcggt
     1201 tcgtcggggg gagtgttcag
//
LOCUS       DATCGC010001555         1187 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_387619, whole genome shotgun sequence.
ACCESSION   DATCGC010001555 DATCGC010000000
VERSION     DATCGC010001555.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1187
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_387619"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..377
                     /locus_tag="VIJ87_14870"
     CDS             <1..377
                     /locus_tag="VIJ87_14870"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY5445719.1"
                     /translation="SQNPEAYLSRAAINASLDLLRSRNRAKSVGLEDADAEALTSRFK
                     SPETEHADRELQTLVRQAVSRLGKTAGEMFVLRYYEGFDNKEIAGILKTSPLVVGVVL
                     HRARTRLKKEIGHYLEKHHEKD"
     gene            364..>1187
                     /locus_tag="VIJ87_14875"
     CDS             364..>1187
                     /locus_tag="VIJ87_14875"
                     /inference="COORDINATES: protein motif:HMM:NF016648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FecR family protein"
                     /protein_id="HEY5445720.1"
                     /translation="MKRTNDESILDKVTAEIRNTPVDPDAESAAAGRVWARVSAAAGE
                     AKLQSPAVVAADRIEGCSDFQSLIPAHIAGNLSEARSLLLVDHTHECIPCRKAMKVAR
                     SGNTQVRKESAKPRRYSIQPVVLRWGIAAALVVGFGLLAIPLVQRYLPFGNIDATVQA
                     AEGQVYQVADTQTASLAAGAKLAKGERVRTAKDAHAVVRLGDGSLIEMKERSEFYLTK
                     NGQGTTIHLDRGNIVVEAAKQKGQHLFVDTGDSLVSVTGTVFSVNNGTKGSRVSVI"
BASE COUNT          281 a          295 c          338 g          273 t
ORIGIN      
        1 tgtcgcagaa ccctgaggct tacctttccc gcgccgccat caatgcttca ttggaccttc
       61 ttcgcagtcg taaccgagcc aaatcggtag gactcgaaga tgccgatgct gaggcgttaa
      121 cgagtcgctt caaaagtccg gagacagagc acgccgatcg tgaactgcaa actttagttc
      181 gccaggctgt ttcccgtttg ggcaagactg cgggtgagat gtttgtgctt cgctattacg
      241 aaggcttcga taacaaagag atcgccggca ttctaaaaac ttcccccctg gtggttggag
      301 ttgtccttca tcgagctcgc acacgactaa aaaaagagat tgggcactat ctggagaaac
      361 atcatgaaaa ggactaacga cgaaagcatt ctcgacaaag ttacagccga gatccgcaat
      421 actccggttg atccggacgc agagtcagca gcggcaggac gtgtttgggc gcgtgtttcc
      481 gctgcagccg gcgaggcgaa gcttcagagt cctgcagtgg tggcagctga tcgaattgag
      541 ggttgttcag actttcagtc gttgatacct gctcacattg ccggaaactt atctgaagct
      601 cgttcgctgt tgttagtaga tcacacgcac gagtgtattc cgtgtcgcaa agccatgaag
      661 gtagcgcgct cgggcaacac acaggttcgt aaggaatctg ccaagccgag gcgctactcg
      721 attcagccgg ttgttctacg ctggggaatc gcagcggcgc tggtagttgg tttcgggctc
      781 ctggccattc cgttggttca gcgctacttg ccattcggaa atattgacgc aaccgtccag
      841 gcagcagaag gccaggtcta tcaagttgct gatacgcaaa cggcatcact tgcggcaggc
      901 gctaagctcg ccaagggaga acgcgttcgt acagcgaagg acgcgcatgc agttgttcgt
      961 ctcggcgatg gctcgttaat cgagatgaag gaaaggtcgg agttttatct gaccaaaaat
     1021 ggacagggaa ccacgattca ccttgaccgc ggcaacatcg ttgttgaagc ggcgaagcaa
     1081 aaaggtcaac acctgtttgt tgatactggc gattcgctgg tgtctgtgac tggtaccgtg
     1141 ttctcggtga acaacggcac aaagggttca cgagtgtccg ttattga
//
LOCUS       DATCGC010001556         1201 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_420460, whole genome shotgun sequence.
ACCESSION   DATCGC010001556 DATCGC010000000
VERSION     DATCGC010001556.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1201
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_420460"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..293
                     /locus_tag="VIJ87_14880"
     CDS             <1..293
                     /locus_tag="VIJ87_14880"
                     /inference="COORDINATES: protein motif:HMM:NF014669.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015225 - biotin transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015878 - biotin transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="biotin transporter BioY"
                     /protein_id="HEY5445721.1"
                     /translation="VSFPAAAYITGAFAENGWDRRFLTAAAAMSIGSIVILLAGWSWL
                     VVLHTPPVAAFNAGVKPFLLGDVVKVILAAAVLPSGWAILKRKASQTPGEKE"
     gene            545..940
                     /locus_tag="VIJ87_14885"
     CDS             545..940
                     /locus_tag="VIJ87_14885"
                     /inference="COORDINATES: protein motif:HMM:TIGR00149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="secondary thiamine-phosphate synthase enzyme
                     YjbQ"
                     /protein_id="HEY5445722.1"
                     /translation="MMITLKVRSHQREELVEFTDQVAEKLRESGVSEGVVVLYVQHTT
                     AGLTINENADPDVPRDMLHALRTLIPQHGMGFRHGEENSDAHIKASLTGPSVTVPFAD
                     GKLLLGRWQGIFLCEFDGGRERKVIMMIR"
     gene            954..>1201
                     /locus_tag="VIJ87_14890"
     CDS             954..>1201
                     /locus_tag="VIJ87_14890"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY5445723.1"
                     /translation="MTKARYDDVAQYYEGVMRPFERWVIPGLRQAALNEIPTGARILE
                     VGAGTGLNFIHYPKDATGVASELSREMLKHARAKNRPRG"
BASE COUNT          287 a          290 c          338 g          286 t
ORIGIN      
        1 tagtttcatt tccggcggcc gcttacatca ccggcgcctt tgctgaaaac ggttgggacc
       61 gtaggttcct gactgccgca gccgcaatga gcatcgggtc gattgtgatt ctgttggctg
      121 gctggtcctg gctggtagtt ctgcacaccc ctccggttgc tgcgttcaat gccggtgtga
      181 aaccgttcct gcttggtgat gtcgtcaagg tgatcctggc ggctgcagtg ttaccgagtg
      241 gctgggcgat tcttaaacgt aaggcgtcac agaccccagg tgaaaaagaa taagcggtct
      301 acaaaatttc tagaaccaac gcccttgagt atgcactaaa ctcaggggcg tttttatgag
      361 tagtggatcc agatcaggat tccttcgctc cggaaggagc gatatgttta tagtcttgaa
      421 agctgaatga tttcctcgcc gaaggcgcgg agcatgagta ggtatcgaag ctataaacat
      481 ctcgctcctc cggagcgaag aagcattaac ctcaacgcgt ttcgttcaag acctggaaga
      541 agcaatgatg attactctta aagtcagatc tcatcagcgc gaagagttgg ttgagttcac
      601 cgaccaagtt gctgaaaaac tccgcgagtc aggagtcagc gagggcgtgg ttgtccttta
      661 cgtccaacac acaacggccg gcctaactat caacgagaat gccgacccgg atgtgccgcg
      721 cgatatgcta cacgctctgc gaacgttgat tccgcaacat ggtatgggct tccgacatgg
      781 cgaagaaaat tccgacgcgc atatcaaagc gagtttgacc gggccttcgg taacagttcc
      841 ttttgctgac ggaaaactat tgctcggtag atggcagggc atttttctgt gcgagtttga
      901 tggtggacgc gaacgtaaag tcatcatgat gattcgttag ccaaattgtg aatatgacaa
      961 aggcgcgata cgacgacgtg gcgcaatact acgaaggcgt gatgcgtccg ttcgagcgct
     1021 gggttatccc aggtcttcgt caggctgcgc tgaatgaaat ccctactgga gcacggattc
     1081 ttgaagttgg cgccggaacc ggattgaact tcattcacta ccccaaggac gcgactggag
     1141 tcgcgtctga attgagcaga gaaatgttga agcatgcgcg cgcgaagaat cgcccacgtg
     1201 g
//
LOCUS       DATCGC010001557         1369 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_356215, whole genome shotgun sequence.
ACCESSION   DATCGC010001557 DATCGC010000000
VERSION     DATCGC010001557.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1369)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1369)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1369
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_356215"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..693)
                     /locus_tag="VIJ87_14895"
     CDS             complement(<1..693)
                     /locus_tag="VIJ87_14895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445724.1"
                     /translation="MRRGLPNRFHRVNSPLQRLNPRRIFVLIAALIAVSISLFLISSG
                     SAQRKTFVETPTGSKSAPQAAYWSPGNRHKVEVSDKATAEKVEAAGGRLIADYSAFSV
                     YEVDTKAANSLAAEKDVQTRDEDNLIQLNAGAIDTTKSEVQSARVRLRAFDGKRMHLI
                     QFAGPIKSDWYDALSKTGVEVVSYVPSNTYLVYGTSEQLGRVQGLSNSLGTVQWDGEY
                     KNGYKIDPSISSN"
     gene            complement(1095..>1369)
                     /locus_tag="VIJ87_14900"
     CDS             complement(1095..>1369)
                     /locus_tag="VIJ87_14900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445725.1"
                     /translation="SLDGSVELLRSGSYLTCFFNLATADGKYKIKDVSTAGVDANFRF
                     KVSATAVIENKGKQLRLSGKLEITDLQSMLIFQTAEGSTLSLTDRP"
BASE COUNT          343 a          334 c          335 g          357 t
ORIGIN      
        1 gttcgaagaa atagagggat caatcttgta gccgttctta tattctccat cccactgaac
       61 ggtacccaag ctgttggaga gaccctgaac tctgcctaat tgttcgcttg tgccgtagac
      121 aaggtaggta ttacttggca catacgatac aacctcgact ccggtcttgc ttaatgcgtc
      181 ataccagtcg gacttgatcg gacctgcaaa ttggatcaag tgcatgcgct tgccgtcgaa
      241 ggcacgaagc ctcacgcgcg ctgactggac ttcgcttttc gtggtatcaa ttgcaccggc
      301 attaagttgg atcaggttgt cttcatcccg agtctgaaca tctttttcag ctgcaagtga
      361 gttcgccgcc ttcgtatcaa cctcgtaaac actaaacgcc gaatagtcag cgatcagacg
      421 cccaccagct gcttcgacct tttccgcagt ggctttgtcg cttacttcga ctttatggcg
      481 attgccagga ctccaataag cagcttgagg cgcgcttttg ctacccgtgg gggtctcaac
      541 aaaagtcttc cgctgcgcgc tgccgcttga tatcaaaaac agtgagattg acacagcaat
      601 cagggccgca atcagaacaa agattcttct tgggtttagt cgttgcagag gtgagttaac
      661 acgatgaaat cgattgggca atcctcgtct cattacaagc cctccttgag gcgatcgcgt
      721 tgagcagtct tcgagcaatc gattatcgat ttcccgaatg agttaagttc ttgaggaacg
      781 accttggggg gacgtcgtta ccgctttatc gacagaggag aaaggcaacg gaaagaaagc
      841 tagtaaggcc gactcttttt cagcaatatt tccctttgaa ttgagtagtg gatgcaacgg
      901 gaaacagtgt tccagagttg gcaatgcgat ttgtcgacaa gttatgtgcc acgacgatta
      961 agtcgaacta accgcgaaaa aatggggaaa gtccaattct ttgggtggct gttctgtcta
     1021 gtgtctagac atcgagtccc aattcaagaa tggggttgaa acgaatcgtc atagtacttg
     1081 tacggtggtg gagtctaagg tcggtcagtc agactcaacg tcgaaccctc ggctgtctga
     1141 aaaattaaca tcgactggag gtcagtaatc tccagctttc ctgataggcg aagttgcttt
     1201 cccttgttct caatcacggc ggtcgccgac actttgaacc gaaaattcgc atcgaccccc
     1261 gcagttgata cgtctttaat cttatatttc ccatcagctg ttgcgaggtt gaagaagcaa
     1321 gtaaggtagg aaccgcttcg caacagctca acgctaccgt ccaacgaac
//
LOCUS       DATCGC010001558         1342 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_456223, whole genome shotgun sequence.
ACCESSION   DATCGC010001558 DATCGC010000000
VERSION     DATCGC010001558.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1342)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1342)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1342
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_456223"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            65..>1342
                     /locus_tag="VIJ87_14905"
     CDS             65..>1342
                     /locus_tag="VIJ87_14905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445726.1"
                     /translation="MRDSDCKTRWRFGLLAAVAVTLVAFAPQLYFNLSRGSHWNGAYA
                     QTHGDESVYSSYLNSLIDGRPRRNNPYSGRDDSQEHPAAESYLSVQFLPPFLIATTAR
                     LVRISSTNAFMALTVTTAFVSALAVFWLLASILKDSRLAAIGVLVVLLASSANLIVEH
                     LLGLGDSNNYLPFLRRYLPAAPFPILFIYCGLLLQMLTSTSKRVAAASVVSAGILFAV
                     LVFSYFYDWTFAVVWTGCLAGIWLVVRPHERKRVVSLFLILAGLMIASVVPYLLLISR
                     LGATTGEAHFMATSHKPDLFRLTELFGVLIIALIGFLIARGWVKSSEPTVVFALACAV
                     TPFLLFNQQILTGRSLQPFHYEVFIGGYTTMLAAFVIVILLWRSLTATRPAVARILLT
                     LIACGAVLSGSAEATLMTRRQLTGNQIRDDVRPA"
BASE COUNT          268 a          369 c          330 g          375 t
ORIGIN      
        1 gctcggtgag accttcggat aatccgactc cttggaaata tacggtccaa aggaagttct
       61 caatttgagg gattctgatt gtaagacgcg ctggcgtttt ggattacttg ccgctgtcgc
      121 tgtcacacta gtagcgtttg ctcctcagct ctatttcaac ctctccagag gcagtcactg
      181 gaatggcgct tacgcacaga cgcatggcga tgaatcagtc tactcttcct accttaattc
      241 actgatcgat ggccgcccgc gtcgaaataa tccctatagc ggccgcgatg attcgcaaga
      301 acatccggca gcagaatctt atctgtcagt tcaatttctt ccgccttttc tgatagccac
      361 gacagctcgt ctcgtcagga tctcgagcac caatgctttc atggcattga ctgtaaccac
      421 agctttcgtt tcggcgctgg ctgtcttctg gttgctcgca tcgattctca aggacagccg
      481 cttggcggcg attggggttc tcgttgtgct tttggcaagc tcagcaaatc taattgtcga
      541 acacttgctt ggattgggcg actctaacaa ttatctgcct ttccttcgtc gctatctgcc
      601 agcggctcct ttcccgatac tgttcatcta ttgtggactg ctcttgcaaa tgctgacctc
      661 aaccagcaaa cgtgtggctg cagcgtccgt ggtgagcgcg ggaattctct ttgcagttct
      721 ggtcttttcg tatttttacg actggacgtt cgctgttgta tggaccggtt gcctggcagg
      781 aatatggttg gttgtccgac cgcacgaacg caaacgagtg gtgtcattat tcttgattct
      841 agcgggcctc atgatcgcct cggtcgttcc atacttgcta ctcatatcca ggcttggcgc
      901 aacgaccggc gaagcacact tcatggccac ctcacacaag cctgacttgt tccgcctcac
      961 ggagttgttc ggcgttttaa taatcgcgct aatcggtttc ctgatcgctc gaggctgggt
     1021 gaagtccagc gaaccgacgg tggtctttgc ccttgcttgc gcagtaactc ccttcctact
     1081 cttcaaccaa cagatattga ccggcagatc actccaaccg tttcattacg aagtgttcat
     1141 tggcggttac acaacaatgc ttgcggcttt tgtgattgtc attctgttgt ggcgcagctt
     1201 gaccgcaaca agaccggcag ttgctcgaat cttgctgacc ctaattgcgt gtggcgcagt
     1261 cttgtcgggc agcgccgagg cgacactaat gacccgtcgc cagttaaccg gaaaccaaat
     1321 acgtgacgac gtcagaccgg cc
//
LOCUS       DATCGC010001559         1078 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_488553, whole genome shotgun sequence.
ACCESSION   DATCGC010001559 DATCGC010000000
VERSION     DATCGC010001559.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1078)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1078
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_488553"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..486)
                     /locus_tag="VIJ87_14910"
     CDS             complement(<1..486)
                     /locus_tag="VIJ87_14910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445727.1"
                     /translation="MNKERGGGTETGRRGDREMMMNVLKLALTVMMLAATAAAQQPGN
                     PTNQQGVTPPRGTYVIRNARIVTVSGADIENGSIVIRDGKIEAVGTSVNVPAGAQSID
                     GHGLSVYPGMIDAGTSMGLVEVPQGASGTVDTSEVGEFNPNSRAIIAVNPHSAHIGVA
                     RV"
     gene            complement(483..>1078)
                     /locus_tag="VIJ87_14915"
     CDS             complement(483..>1078)
                     /locus_tag="VIJ87_14915"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY5445728.1"
                     /translation="KIKTFQHVLEGYKVAKEIAAHGAGASTFADSWAYKIEAYDAIPY
                     NMAIMTRAGVVVSVNSDSDERARRLNIEAAKAMHWGDLTEEQALKLITINPAIQLGIQ
                     DKVGSIEVGKDADLAIWNAHPFSVYSRVDTTFIDGDIFFDRQQDLSRRADLAKERATL
                     EQADPNKPPAQGQTPGVNRRRPRTHSDDEEVWEGERP"
BASE COUNT          216 a          301 c          279 g          282 t
ORIGIN      
        1 aacgcgagct acgccgatgt gtgcactgtg tgggttgacc gcgatgatcg cgcgtgagtt
       61 tggattaaac tcgccaacct cagaagtgtc gactgttcca ctcgcacctt gcggaacttc
      121 gacaagaccc atgctcgttc cagcgtcgat cattcccgga tagactgaca gcccatgtcc
      181 atcgattgat tgcgcgccgg caggaacatt gacgctcgtg ccgacagctt cgatcttgcc
      241 atcgcgaatc acgatgctac cgttttcgat atccgcgcca ctcaccgtta cgattcgagc
      301 gttgcgaata acgtatgtgc ctcttggagg agtcacaccc tgttggttgg tcggattgcc
      361 gggctgttgc gccgctgctg ttgccgcgag catcatcacc gttaaagcca acttcaaaac
      421 gttcatcatc atctccctgt caccccgtct ccccgtctcc gtcccacccc ctctttcctt
      481 gttcatggcc tttctccttc ccaaacttct tcgtcatcac tgtgtgtgcg tggacgacga
      541 cgatttacgc cgggagtttg accttgtgcc ggaggcttgt tgggatcggc ctgttcgagt
      601 gtggcgcgtt ccttggcgag gtctgcgcga cgggaaagat cctgctggcg atcaaaaaag
      661 atgtcgccat cgatgaatgt tgtatcaact cgtgaataga cgctgaacgg atgagcattc
      721 caaattgcga gatcagcatc cttgcctact tcgatcgagc cgactttgtc ttgaatacca
      781 agttgaatgg ctggattgat ggtgatgagt ttcagcgcct gctcttccgt tagatcaccc
      841 cagtgcattg ccttggccgc ttcgatgttc agacgacgag cgcgttcatc ggaatcggag
      901 ttaactgaaa caacaacacc ggcccgagtc atgattgcca tgttgtaagg gattgcgtcg
      961 taggcctcga ttttgtaagc ccatgaatcc gcaaacgtcg aagcgccggc accgtgggcg
     1021 gcaatttctt tcgccacttt gtagccttca agaacgtgtt ggaaagtttt gatcttga
//
LOCUS       DATCGC010001560         1146 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_420553, whole genome shotgun sequence.
ACCESSION   DATCGC010001560 DATCGC010000000
VERSION     DATCGC010001560.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1146)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1146)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1146
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_420553"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(231..>1146)
                     /locus_tag="VIJ87_14920"
     CDS             complement(231..>1146)
                     /locus_tag="VIJ87_14920"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF012403.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEY5445729.1"
                     /translation="ENHLGELWSLFEFLNPGMLGASSVFQGATSLARTPDLESRTMLS
                     HALRPFLLRRTKQQVAKELPEKLEQTIYCEMDDRQRKQYEELRDFYRSSLLEKVQNQG
                     INKSKIQILEALLRLRQTACHPSLVTGEVDDISPNAKLDILLPRLSEISEEGHKVIVF
                     SQFTSFLSIVRRRLENEGVTYEYLDGKTRDRQEPVEKFQSDPDCKLFLISLKAGGQGL
                     NLTAAEYVFLLDPWWNPAVEAQAIDRAHRIGQTRRVFAYRLITRDTVEEKVLALQDTK
                     RDLADAIINADNSVLRNITGEDLALLLS"
BASE COUNT          257 a          314 c          290 g          285 t
ORIGIN      
        1 cggcagtgcg gggattgttc aggtccgacc tacagactac gacccttcga atctgacgct
       61 ggtgcgggga gaacgattcc gtcgttctca aagactcgct cgaactccgc gcgaagcgtc
      121 gaggcttttg agagattgat ttcgtaggtt ggacttgaac atatcaccgc actgccgtgc
      181 gtgggatttc ggtgattgtt atttggtgct tgtttgcgag aaatcgaacc tcacgacaac
      241 agcagcgcga ggtcttcgcc cgtgatgttc ctaagaacgc tgttgtcagc attgataatc
      301 gcgtcggcta aatcgcgctt ggtgtcttgc aatgccaaca ctttctcctc aaccgtgtcg
      361 cgcgtgatca acctgtaggc aaacacgcgt cgagtttgcc cgatgcgatg ggcgcgatcg
      421 attgcctgag cctcaaccgc gggattccac cacgggtcca gaaggaatac atactccgcg
      481 gccgttagat ttaacccctg gccacccgct ttcagactga tcaaaaacaa tttgcaatct
      541 ggatctgatt ggaatttctc aaccggctcc tgtcgatcgc gcgtcttgcc gtcgagatat
      601 tcatacgtca cgccttcgtt ttccagtcgc cttcgaacaa ttgagaggaa gctcgtgaac
      661 tgtgaaaaca caatgacctt gtgtccctct tcgctgattt cgctgagacg agggaggagt
      721 atgtcgagct tcgcgttcgg actgatgtcg tcgacttcgc cagtcacgag tgaaggatga
      781 caggctgttt ggcgcagccg cagcaacgct tcgagtattt gaatcttcga cttgttgatt
      841 ccctggttct gaaccttctc caatagcgat gaccgataaa aatcacgcaa ttcttcatat
      901 tgtttgcgct gacgatcatc catctcacaa tagatcgttt gctcaagttt ctccggcagc
      961 tccttggcaa cttgttgctt cgtgcgccgc aaaagaaagg gacgtaacgc atgcgacaac
     1021 atggtgcgac tctcgagatc cggagtccga gccaggctcg tcgccccttg aaagaccgac
     1081 gacgccccaa gcattcccgg gttcaaaaac tcaaacagac tccacaactc gccaagatga
     1141 ttctcg
//
LOCUS       DATCGC010001561         2368 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_254873, whole genome shotgun sequence.
ACCESSION   DATCGC010001561 DATCGC010000000
VERSION     DATCGC010001561.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2368)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2368)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2368
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_254873"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..203
                     /locus_tag="VIJ87_14925"
     CDS             <1..203
                     /locus_tag="VIJ87_14925"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEY5445730.1"
                     /translation="AHNLRLKVIAEGVETEEQLRFLHLLRCDEIQGSLFSKPLPADGL
                     ESLLDSHSGRLPVKALQQAQSD"
     gene            complement(285..2024)
                     /locus_tag="VIJ87_14930"
     CDS             complement(285..2024)
                     /locus_tag="VIJ87_14930"
                     /inference="COORDINATES: protein motif:HMM:NF024758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEY5445731.1"
                     /translation="MRRLVLVTLAALFLAALLLPSQRKFVVHAVSDGERLAMYTKPAV
                     VRTVDGAVGQIYFQPPGYQGQTYNVSYVGTGSGFILSSNGYIATNAHCVDTTHNGEDK
                     AKQVLFYQMVQQIAQQLNKRPQDLNTNFIDQYSRMTSFELIHKVFLPDGSSYPFEIKQ
                     FGAPTGESNDQGKDVAIIKIEIKNAPILKIGDSDKVQLQDHITVIGYPAAGDTKLLDF
                     KSLMEATVNDGKISARKTATSGAPILQTNTAATHGNSGGPGINDDFEVIGLLTFRGDV
                     VNNQEVQGFTFLVPSNTVMEYVKSAGATNALGLTDTLFREGLNYYWDQHYTDATQKFE
                     EVKRLFPQHSEVDKLIQSSQQAKSEGKEKSSFPIWLIVVVVVVVLAIGLIIIIGIVIA
                     IVARRKKGRATSAGKSGKPQPAPTPASYSPAPSAAPAPRYSPSPAAKPAPPPPMPTPA
                     STAGDQGMTVDLSRTIAITPELDTAPINYGSIKFISGALAGKEFPIKPDGEFVGRDSG
                     SAQVVIPDPRISKRHLWIGVREGRVMIVDQESRNGTFVNDPKSPRVKEISLNPGDTVI
                     LGESDVARFEYLN"
BASE COUNT          562 a          569 c          619 g          618 t
ORIGIN      
        1 ttgcccacaa cttgagattg aaggtgattg cggagggagt cgaaactgag gagcaactgc
       61 gatttcttca cctgttacgc tgcgatgaga ttcaaggctc cctgttcagc aaaccgttac
      121 cggcggatgg cctcgaatcg ttacttgatt ctcattccgg acgactacct gtcaaagcat
      181 tgcagcaagc acaatccgat tagtcccgaa agcatcttaa aagaaagaag ggattccgat
      241 aagttcggaa tcccttctat tgttttcggc gaatgaagtc tttcttagtt caaatactcg
      301 aaccgggcga cgtctgattc accgaggatc acagtgtcgc caggattgag tgatatctcc
      361 ttgactcgag gcgatttcgg atcgttaaca aatgtgccgt tgcgagattc ctggtcgaca
      421 atcatcactc gcccctcacg aactccaatc cacaggtgtc gttttgagat tctaggatcg
      481 ggaattacca cctgcgcact gccgctgtcg cggcctacga attcgccgtc aggtttgatc
      541 gggaattcct taccggccaa agccccggaa ataaacttga tactgccgta gtttattggc
      601 gcagtatcca gttcaggtgt gatggcaatt gtccgtgaca agtccaccgt cattccctga
      661 tcgccagcag tactagcagg cgttggcatg ggtggaggag gcgcaggttt ggcagccgga
      721 gacggcgaat agcggggagc gggtgccgcg gagggagctg gtgaataaga tgcgggtgtt
      781 ggcgcgggct gcggcttacc actcttgcca gcacttgtcg ctctgccctt cttcctacgc
      841 gctacgatag cgatcacgat tccgatgatt atgataagac caattgccag cacgacgact
      901 actaccacca caatcagcca gatcgggaag cttgatttct ctttaccttc cgacttcgct
      961 tgctgactgc tctgaatcag cttgtcgact tctgaatgct gtgggaagag tcgcttgacc
     1021 tcttcaaatt tttgagttgc gtccgtatag tgctgatccc agtagtagtt cagaccttca
     1081 cggaacaacg tatcagtcag gcctaatgca ttcgtggccc cagccgattt cacgtattcc
     1141 attacggtgt tagacggcac taagaatgta aaaccctgga cttcctgatt gttgacgaca
     1201 tcaccacgaa aagttagtag gccaatcact tcaaaatcat cgttgatacc ggggccaccg
     1261 gaattcccgt gggtggctgc ggtattggtc tgcagtattg gcgctccgct tgtggcagtc
     1321 tttctcgcgg agatttttcc gtcgtttacc gttgcctcca tcagcgattt gaaatcaagc
     1381 aacttggtgt cacccgcggc cgggtaaccg atcacggtga tgtgatcttg tagttgcacc
     1441 ttgtcggagt cgccgatttt aagaatagga gcgttcttga tttcgatctt gataatggct
     1501 acgtctttgc cctgatcgtt actttctccc gtgggagcac caaactgctt gatttcaaac
     1561 gggtaggaac tgccatcggg caggaagact ttgtgaatca attcaaacga cgtcatccgg
     1621 ctgtactggt caatgaagtt cgtattcaaa tcttgtggac gcttgttcag ctgttgagcg
     1681 atctgctgaa ccatctggta gaacagaacc tgctttgctt tgtcttcacc gttgtgagtc
     1741 gtgtcgacgc agtgcgcatt ggttgcgata tagccattgg aactaagaat gaaacctgag
     1801 cccgtcccta cataagagac gttgtaggtt tgtccctggt agcccggcgg ttggaaatag
     1861 atttgtccga ccgcaccatc cactgttcgg acgactgcgg gcttggtata cattgccagg
     1921 cgttcaccat ctgaaacggc gtggacaaca aacttgcgtt gtgacggaag cagcagagca
     1981 gcgagaaaaa gagcggccag ggtcacaaga acgagtctgc gcataagaag ggctccttag
     2041 gggttgtttt tactgcgaaa caaagtcatc tcaaaattga aaagcacgag tcgaagataa
     2101 tacggcggca ctgttagatc tgacgctgga taggtcaaaa agagactcca gctggttttg
     2161 tagtagagtg cttctaaagg aattcctaac gaaagtcaat cgaaaatgcc gtagccgttt
     2221 cggtgagaat tgcgtactgt aattgaacgc tccgcacttt agaccgtatc ggttttgctc
     2281 cggcacatat tcgaaaagtc aggaatttat agttcaaact ggtggtacat tgcttgctga
     2341 attttgactg atggggaggg catcatcg
//
LOCUS       DATCGC010001562         1184 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_56353, whole genome shotgun sequence.
ACCESSION   DATCGC010001562 DATCGC010000000
VERSION     DATCGC010001562.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1184)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1184)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1184
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56353"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1184)
                     /locus_tag="VIJ87_14935"
     CDS             complement(<1..>1184)
                     /locus_tag="VIJ87_14935"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HEY5445732.1"
                     /translation="TRPFGINNEKAILFYSNPETRRLYREHINKLATRKNTVTGVYYR
                     DDPTIFGWELMNEAQVITGRWAERRAWISEMSTYLKSLDPNHLIAPGEWGYRSASERR
                     EWLADHALSTIDYCDVHLYPRDDHDSFVEAPVALKEFVDDRSAAAFSIGKPLVFGEFG
                     MGPEGHNNFSEIEWFKGFFDANLRAGSAGAMFWILTPDPKRGYGVNYTTDRDRELIAE
                     IKRTSDKFASLASAEPPSSLQDASRHLVPRQFAWNRNAVGPETQPNVQFREDKSVLYQ
                     FKPLMASAQRFEKVGAGPGYIWGFGSGFVEYTVPERSDRRRVSEIIVRAHVQPVSPVD
                     AARDFVKTRVTLFVNDWNCGSRLIPFEEGNQTLVQEWRMTGLLLRLRAMRGLPMTIRF
                     EVT"
BASE COUNT          281 a          338 c          293 g          272 t
ORIGIN      
        1 gtgacttcaa aacgaatcgt catcggcaaa ccacgcattg ctctcaagcg aagaagtaat
       61 cccgtcattc gccattcctg aactaatgtt tgattccctt cctcgaaagg aatcaatcgt
      121 gagccgcaat tccaatcgtt cacaaacagc gtaacgcgag tcttcacaaa atcgcgtgcg
      181 gcatcgactg gtgaaacagg ttgaacgtgg gcacggacga ttatttcact aacccgccgg
      241 cgatcggatc gttccgggac cgtgtactca acaaacccgc taccaaaacc ccagatgtac
      301 cctgggccgg cacccacctt ttcgaaccgt tgtgcagacg ccatcagtgg tttgaactga
      361 taaagcactg acttgtcttc gcggaactga acgttgggtt gcgtctctgg cccaacggcg
      421 ttgcgattcc acgcaaattg acgaggcacc aggtgtctcg atgcatcctg caaacttgat
      481 ggcggttctg ccgaagccag cgatgcgaac ttgtcggaag tacgcttgat ctcggctatt
      541 aactcccgat ctctgtcggt cgtgtagttc actccgtaac cacgctttgg gtccggagtg
      601 agtatccaaa acattgcccc ggcacttccc gcacgcaagt tggcgtcaaa gaatcctttg
      661 aaccattcga tctccgaaaa gttgttgtgg ccttcaggtc ccattccaaa ttcgccgaac
      721 accagcggct tcccaatgga aaacgccgcg gcggatcgat catcaacgaa ttccttcagc
      781 gcgaccggcg cctcaacgaa actatcatga tcgtcacgcg ggtagaggtg cacgtcacag
      841 tagtcgatcg tcgacaaggc atgatccgcc aaccattcac gccgctcaga agctgaacgg
      901 tatccccact cgcccggtgc gatcagatga tttggatcaa gcgactttag atacgtgctc
      961 atctcagaga tccatgctcg gcgttcggcc cagcgaccag tgatgacttg tgcttcgttc
     1021 atcaattccc aaccgaagat cgtagggtcg tcgcgatagt agacacctgt cactgtgttc
     1081 ttccgcgtcg cgagcttgtt gatatgttcg cgatagagac gacgcgtctc ggggttagag
     1141 tagaaaagaa tcgccttctc gttattaatg ccgaacgggc gagt
//
LOCUS       DATCGC010001563         2587 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_221806, whole genome shotgun sequence.
ACCESSION   DATCGC010001563 DATCGC010000000
VERSION     DATCGC010001563.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2587)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2587)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2587
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221806"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            828..1145
                     /locus_tag="VIJ87_14940"
     CDS             828..1145
                     /locus_tag="VIJ87_14940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445733.1"
                     /translation="MSVQHLTIVAAAKKSSDLVVVAEERHEKLCTSVLKDESEIAVAA
                     AFEKLVSYFADTETAMHMRLTKVIDQIAEGQKTFHPFVLRQFLQATDDFGVDGKKLTQ
                     AAS"
     gene            complement(1126..1404)
                     /locus_tag="VIJ87_14945"
     CDS             complement(1126..1404)
                     /locus_tag="VIJ87_14945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445734.1"
                     /translation="MKTLTITDAKKNLGRWLAAAARGEDIGIVCGADIVALRKVDVES
                     TDYAQREYGAGAELIAALEKATEQRYRRLKRGKKLTSTTAQELRKLLE"
     gene            1767..2213
                     /locus_tag="VIJ87_14950"
     CDS             1767..2213
                     /locus_tag="VIJ87_14950"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HEY5445735.1"
                     /translation="MELVRWDQVEGVNRIQSRINELFEDTFGRTRAQQSAAAGVWYPP
                     VDILESKDSYLIRAELPGMRKEDLKTEVNEGILTLSGERKFEEPASGVEYHRVERVTG
                     KFSRSFYLPQTVKHDGIKATYRDGILEVQVPKADEAKPRQIDISVN"
BASE COUNT          661 a          634 c          660 g          632 t
ORIGIN      
        1 ggaacggccg tcggttcaat gattcggcac agttcagcat gagcgaaata attttccacc
       61 tctctagccg aaggggaaac ttgcacgttt tgataattct caaacatcaa tacaaattag
      121 ccggagcttg gcgatgatcc cttcaggatg cttgcctccg agtctcgccg cgtaaaacct
      181 cctgacaaaa agttttggca ggaggttaag caggctcgaa acgcatttca gtctaatatt
      241 gaacgatttt gaaaagaatc tagcgcggct taattaaaga caaagaagct caagccgtgg
      301 tcgtgtttcg tgatggaaaa gaatcgtgat tcgtcgtcgt ggtgggaaac ttccacgttt
      361 cgggaattct tcaaaacgtc gaaatgagcc tctatccgtt ttcgaagata tgttcataac
      421 ccgttccagt atcttagaag gcgctttcat ctcaactcat atggctgact tccacgtttc
      481 cggattccgg aaacgtggaa tgggcctgct cgagtacgca atgccaggca ttgaagaata
      541 acagcgatcg tgtttgttcg catgattctg aacgtcggtt cacaagacgc attaaagctt
      601 aacgtacagc aattcggccg gagcgccacg attcgatctc cgggaattta ctggatttgt
      661 cgggtttgtg acaaccgaaa gcggcaatag gtcgttcaat cagccagccc tgagtcccgt
      721 cgaagggttc aatcgcttcg cggagcctac cctgagcgca gtcgaagggt tcaaaacgtt
      781 acagactgac gcagcgcggg aacttgcacg ttttgaagac tttcataatg tccgtccaac
      841 atttaacgat agttgccgcg gcgaagaaga gttctgatct cgtcgtggtt gccgaggaac
      901 gacacgaaaa gctctgcacc tcggtcttga aagatgaatc ggagatcgcg gttgccgcgg
      961 cattcgaaaa gcttgtttcc tattttgcgg ataccgagac cgctatgcac atgaggctga
     1021 ccaaagtgat cgaccagatc gcagagggcc aaaagacatt ccatcctttc gttcttcggc
     1081 agttcctgca agcgacggat gacttcgggg tcgatggcaa gaagcttact caagcagctt
     1141 cctgagctct tgcgcagtcg tcgacgtaag ttttttgccc cgtttcaggc gtcgatagcg
     1201 ctgctcggta gccttttcca aagccgctat gagttcggca cccgcgccgt attcgcgctg
     1261 tgcgtaatcc gtggactcga cgtcgacctt ccgaagcgcg acgatatcgg cgccacagac
     1321 aatgccaata tcctcacccc gtgccgcggc cgccagccag cggcccagat ttttcttcgc
     1381 atcggtaatc gttagggttt tcataaagac tttatatcgg cttaatatag tcctgtcaag
     1441 aaacgaatac cgcgctcccg ttccaatcgt tcaatgagcc tgccctgagt ctatcgaagg
     1501 gttcaaaacg ttacagattc atgccgtaca aagttcgaac gcgcgattct gcgtgtcgac
     1561 ttgcctgact ctattaactt cacattgttc tcttgcagcg cgcggctgac gattggtacc
     1621 cggtgtaggg gttatctaac ctccagccag cgtccgtcaa accggggcta agtttaacat
     1681 gtcctacttt cctcccttga cgcggtgaca cgcggtgatt aagttcccta catctaaaca
     1741 aaaggtttaa aaaaggagaa ctaattatgg aactagtaag atgggatcaa gttgagggtg
     1801 taaacagaat tcagtcccgg atcaacgagc tattcgaaga cacgttcggt cggacacggg
     1861 cgcaacagag tgctgccgct ggagtctggt atcctcccgt ggacattctt gaaagtaagg
     1921 attcgtatct cattcgcgcc gagttacccg gaatgagaaa agaggacctc aaaacggaag
     1981 tgaacgaagg gatattgaca ctcagtggcg agagaaagtt tgaagagccg gccagtgggg
     2041 tcgagtacca ccgggtcgag cgggttacag gtaagttttc tcgatccttc tacctgccgc
     2101 aaaccgtgaa acacgatggc atcaaagcaa cctatcggga cggaatactt gaggtacaag
     2161 ttcccaaagc cgatgaggcc aagccaagac agatcgatat aagcgtgaac tgattcatcg
     2221 caaaccgtca aacagaaact aaggggaaag ccaagcgctt ccccttagtt ctctcgtaac
     2281 gccactaaaa gcacgtacct tagtgtcgaa gattggctga aaatatctcg catccatttc
     2341 attattgtgc gagcagcacg caagctggtt ttaaggagcc tttggatgag agggcagact
     2401 tttttacgtc ttgactttgt tagccggtgt gaattgccaa tgctggcgaa tgaagatcgg
     2461 tccgtccagg aattcgagga tacagtattt cattaaccct caacccgtaa tttgatttgc
     2521 ggacggtctg gtttggacca atcgaggtgg aacgatacac ctcgcggttg atcgatgcgt
     2581 tcgtagg
//
LOCUS       DATCGC010001564         1036 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_387749, whole genome shotgun sequence.
ACCESSION   DATCGC010001564 DATCGC010000000
VERSION     DATCGC010001564.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1036)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1036)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1036
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_387749"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1036
                     /locus_tag="VIJ87_14955"
     CDS             <1..>1036
                     /locus_tag="VIJ87_14955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445736.1"
                     /translation="INLLVAVCACLALALAISSYFLVQQWLHTSQSITPQRKLWQLTF
                     EPGLEIDPSWSPDGRFVAYSSDQGGNFDIWVRSIGEGNSVQVTSSPAHDWQPNWSPDG
                     LSLVFRSEREGGGLFVVPALGGSERKLCGFGYRPRWSPDGSQVLFDSSAYIGAVKSKT
                     FVISATGGTPRDVLNDFVPQFVSTLLVAWHPDGSRLSVWGNHRQAGWSFWTVPLNGGP
                     PLQSQIDTSVQSQLKEAGVRFVNFLWLPSANGLIFEGESQGVRNLWKVKVVPSTLRWI
                     DGLERITTGAGKDTDIAVSSDGRKLAFSIRSERSRLWTVPFDPIAGKTTGTSQPLTVA
                     GMDALQPGLSP"
BASE COUNT          228 a          264 c          290 g          254 t
ORIGIN      
        1 atcaatctgt tggttgctgt ctgcgcctgt ttggctttgg cactcgcgat cagcagttac
       61 tttctggtgc agcagtggtt acacacaagt caatcgatca cgccgcaacg caaactctgg
      121 caactgacgt tcgaacccgg actcgagata gatccttcgt ggtctcccga cggccgattc
      181 gttgcttaca gttcagatca aggtggcaac ttcgacatct gggtccgatc gattggagaa
      241 ggaaactcag ttcaagtaac gagttcgccg gctcatgact ggcaaccgaa ctggtcacca
      301 gacggactct cgctcgtgtt ccggtctgaa cgagaaggtg gtggcctatt tgtagttcct
      361 gcattaggcg gaagcgaacg caagttatgc ggtttcggat atcgtccgcg ttggtctcca
      421 gacggttcgc aagtactttt tgatagttca gcatacatag gcgccgtaaa gtcaaagacc
      481 tttgtcatca gcgccactgg cggaacacct cgtgacgtgt tgaatgactt cgttccgcaa
      541 ttcgtttcca ctcttctcgt cgcatggcat cctgacggta gtcggctctc cgtttggggt
      601 aaccaccgac aggccggttg gagcttttgg accgtcccgt tgaatggtgg gcctccgctg
      661 caatctcaaa tcgacacgag cgtgcaatcg caactcaaag aggccggagt aaggtttgtt
      721 aatttcctct ggctgccctc tgcaaacggt ttgatttttg agggtgagtc gcaaggggta
      781 agaaatcttt ggaaagtaaa agttgttccg tcaacactcc gttggatcga cggactggag
      841 cgcataacta cgggagcagg caaggataca gacatcgctg tgtcttcgga tggacggaag
      901 ttggcgttca gtatccgtag cgaaaggagt cgcctctgga ccgtaccgtt cgatccaatc
      961 gctggaaaaa ccacagggac gtcgcagccg ctaacagtag ccggcatgga cgcgttgcag
     1021 ccaggtttgt caccgg
//
LOCUS       DATCGC010001565         3413 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_122497, whole genome shotgun sequence.
ACCESSION   DATCGC010001565 DATCGC010000000
VERSION     DATCGC010001565.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3413)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3413)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3413
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122497"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1298)
                     /locus_tag="VIJ87_14960"
     CDS             complement(<1..1298)
                     /locus_tag="VIJ87_14960"
                     /inference="COORDINATES: protein motif:HMM:NF014116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016798 - hydrolase activity, acting on
                     glycosyl bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate binding domain-containing protein"
                     /protein_id="HEY5445737.1"
                     /translation="MKSRTITSRHRLKTLIVLLALALAHTQVAFAQTRKITVQVDKPG
                     AAIPNTLFGLFFEDINFGADGGLYPERLKNRSFEFPNPMMGWKQLDRGDGKGQLQIFD
                     HGSINDTPNSHYLRIKSSGNGKGFGVSNEGFRGIGVQKNSDYRFSIRVRRIDGSPLSL
                     RVEVEDGDRLIGETQVEGFTNVWKTYTSTLKPTETSTKAHFNLLLQGNGTVEIDLVSL
                     YPQDTWQNRPNGLRSDLVKLLKEMKPGFLRFPGGCIVEGRTLDQRYQWKTTIGDLAER
                     QLIINRWNTEFNWRLTPDYFQSFGLGYYEYFQLSEDIGAEPLPIMNCGMACQFNSSEL
                     APLEDLDHFIQDAIDLIEFANAPVNTKWGRKRAEMGHPKPFNLKMIGIGNEQWGPQYV
                     ERYEVFAKVLKQKYPNISLVTSAGPSPSGERFDFLWQKMR"
     gene            complement(1336..2484)
                     /locus_tag="VIJ87_14965"
     CDS             complement(1336..2484)
                     /locus_tag="VIJ87_14965"
                     /inference="COORDINATES: protein motif:HMM:NF012551.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endo-1,4-beta-xylanase"
                     /protein_id="HEY5445738.1"
                     /translation="MSSIRRSVQLIVTLLLLSLTVVAQAGRWSEQQAREWYAKQPWLV
                     GSNYNPASAINQLEMWQADSFDPKRIDLELGWAEVLGMNTMRVFLHDLLWQQDPEGFK
                     RRLDQFLTIAAKHKIKPMFVLFDSVWDPDAKLGKQRAPRPGVHNSGWMQSPNRTTLQD
                     PSMYPHLESYVKGVVGAFAHDHRVLAWDIWNEPDNTNGGSYGQLEPKNKVQLVLALLP
                     RAFAWAREAKPEQPLTAGVWKGDWSTPEKMTEMDRLEIDLSDVITFHNYDSPTELEKR
                     INWLMRYNRPMICSEYMARGNGSFFFGSLPVGKVHKVGMINWGFAQGKTQTHLPWDSW
                     QRPYVDREPTVWFHEIFRNDGTPYIVEEVEFIQRMTGKTKAPVRRGGE"
     gene            complement(2618..>3413)
                     /locus_tag="VIJ87_14970"
     CDS             complement(2618..>3413)
                     /locus_tag="VIJ87_14970"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5445739.1"
                     /translation="RGNDPAPVYALLAEVYEQSGHLENAIPAMRLAIQRDPQSEKYRF
                     EYAVLLTNSNAPGAAVIRLEEALQSFPSASRLWFALGFANFKLDKTEEAERALRKAID
                     LDPKFAPAFAYLGLIQARTGVYSEAISLYESALRSDPKLAVVHHLIADAMLKMNADPR
                     MIERHLRQAIEMDPTFASARLALGKLFMRSQRWADAVAELEQTIKLDPGVYEAYYQLG
                     LAYGRLKRTKDAEAAMATFKRLSDAQKKHDDDELREVVKRLSNVRF"
BASE COUNT          772 a          882 c          882 g          877 t
ORIGIN      
        1 tcacgcatct tttgccagag aaaatcaaac cgctcgcccg agggcgacgg cccggcgctc
       61 gttacgagtg aaatgtttgg atatttctgc ttaagaactt tggcgaacac ttcgtaccgc
      121 tcaacatact gtggtcccca ctgttcgttg ccgatgccga tcatcttcaa gttgaacggc
      181 ttgggatggc ccatctcggc gcgcttccgt ccccactttg tattgactgg agcattagcg
      241 aattcgatca gatcgattgc gtcctggatg aagtgatcga gatcttcaag tggagccagt
      301 tcgcttgagt tgaattgaca ggccatgccg caattcatta tcggcaaagg ctccgccccg
      361 atgtcttcgc ttaactggaa atattcatag tagccaagac cgaatgattg aaagtaatca
      421 ggtgttagcc gccagttaaa ttcagtgttc caacgattga tgatgagctg gcgttcagcg
      481 agatctccga tggtagtttt ccattgataa cgttggtcca gggtcctgcc ttcgacaatg
      541 caccctcccg gaaatcgcaa aaagccaggc ttcatctctt tcagaagttt tacaagatcg
      601 ctgcgtaatc cgtttggccg gttctgccag gtgtcttggg gataaagcga tacaagatcg
      661 atctcaacag tgccatttcc ttgcaacaag agattgaagt gagctttcgt gctggtctca
      721 gtgggcttga gtgtcgacgt atatgtcttc caaacattcg taaacccttc gacttgtgtt
      781 tcaccgatca agcgatcacc atcttccact tcaacgcgca ggctaagtgg cgagccgtcg
      841 atgcgtcgta cccggattga gaatcggtag tccgaattct tctgaacgcc tatcccccga
      901 aagccctcgt tggaaacacc aaagccttta ccgttgcctg atgatttgat ccggaggtag
      961 tgagagtttg gggtatcgtt gatcgagccg tgatcgaaga tttgaagttg tcccttgcca
     1021 tcaccgcggt ccaactgctt ccagcccatc ataggatttg gaaactcgaa ggagcggttc
     1081 ttaagtcgtt ccggatagag accgccatca gcgccgaagt tgatatcctc gaagaaaaga
     1141 ccgaagagtg tgtttggaat tgcggcaccc ggcttgtcga cctgcactgt gatctttctc
     1201 gtttgtgcga aagcgacttg agtgtgagca agtgcgagcg cgagcaggac gatgagagtc
     1261 ttaagcctgt gacgactggt aattgttctt gacttcattt gcttaatgtt cgctggtgta
     1321 agtttccacg tcgagttatt cgcccccacg tcgtactggc gcttttgtct tgcccgtcat
     1381 tcgttgaatg aactcaactt cttcgacgat ataaggcgtg ccgtcgttgc gaaagatttc
     1441 gtgaaaccag acggttggtt cgcgatcaac gtaaggccgc tgccacgaat cccagggcaa
     1501 gtgtgtttgt gttttgcctt gcgcgaaacc ccaattgatc attccaactt tgtgcacctt
     1561 accgactggc agcgaaccaa aaaagaaact accgtttcca cgcgccatgt attccgagca
     1621 aatcatcggg cggttatagc gcatgagcca gttaatccgt ttttccaact ccgtcggcga
     1681 gtcgtagtta tggaaggtga tcacatctga gagatctatc tccaggcgat ccatctcggt
     1741 cattttttct ggcgtagacc agtcgccctt ccacacgcca gcagtaagcg gttgctccgg
     1801 tttagcttca cgtgcccatg cgaatgcgcg tggcagaagt gccaacacga gctggacctt
     1861 attcttcggt tcgagttggc cataactccc accgttagtg ttgtcaggct cgttccagat
     1921 gtcccacgcg aggacgcggt gatcgtgagc aaacgcgccc acaactcctt tcacatacga
     1981 ttcaagatgc ggatacatcg aggggtcctg cagcgtcgtg cggttaggac tctgcatcca
     2041 gccagagttg tgtactcctg gtcgaggcgc acgttgtttt ccaagtttcg catcgggatc
     2101 ccagacggaa tcgaagagca cgaacattgg tttgatcttg tgtttagcag caatggttag
     2161 aaactgatcg agtcgccgct tgaaaccttc cgggtcttgc tgccaaagca ggtcatgaag
     2221 gaaaactcgc attgtgttca tgccgagaac ttccgcccag ccgagctcta gatcgattcg
     2281 cttcgggtca aaagagtcag cctgccacat ctcgagttgg ttgattgcgc tagcaggatt
     2341 gtagttgctg ccgactaacc atggctgctt agcgtaccac tcgcgcgcct gttgctcgga
     2401 ccatctccct gcttgagcga cgaccgtaag tgaaagcaaa aggagtgtga cgattaactg
     2461 aactgacctt cttattgaag acattaacgg cgacctttct acactaaacg tcagtaacat
     2521 acgcggtagc gtatggctca ttaggatcat gacttaccac agcaatgtct gtgtcgaccg
     2581 tgaagccgta cgctaccgcg ttatggtact gaccttatta gaagcgcacg ttgcttaatc
     2641 tcttcacgac ttcgcgcaac tcgtcgtcgt cgtgcttctt ctgcgcatcg ctcaaccgtt
     2701 tgaaagtggc catcgctgcc tctgcatctt tcgttcgttt gagtcgacca taggcaagac
     2761 ccagctggta ataggcttcg tacacaccag ggtcgagctt aatggtctgc tcaagttcag
     2821 caacagcatc ggcccatcgt tgcgagcgca tgaagagctt gccgagggcc agacgcgctg
     2881 aagcaaaggt tggatccatt tcgatagctt gacgcagatg tctctcgatc atgcgcggat
     2941 cggcattcat ctttagcatc gcatcggcga tcaggtggtg cacgactgca agcttcggat
     3001 cgctgcgcaa tgcactctcg tagagtgaga tcgcttcgct gtagacgcca gttcttgctt
     3061 gaatcaaacc gagatacgcg aacgccggtg caaattttgg atcgagatca attgcttttc
     3121 tcaaagctcg ttcagcctct tcagttttgt cgagcttaaa gtttgcaaag ccaagggcga
     3181 accataaacg cgaggctgaa ggaaatgact ggagcgcttc ctcaaggcga atgacagcgg
     3241 cgccaggcgc gttggagttg gtcaacaaaa ctgcgtactc aaaacggtat ttctccgatt
     3301 gaggatcccg ctgaatggcc aggcgcattg cggggatcgc gttttctaag tgaccgcttt
     3361 gctcgtagac ttctgccagc aaagcgtaca cgggagccgg atcgttaccg cgt
//
LOCUS       DATCGC010001566         1774 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_323676, whole genome shotgun sequence.
ACCESSION   DATCGC010001566 DATCGC010000000
VERSION     DATCGC010001566.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1774)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1774)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1774
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_323676"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1456)
                     /locus_tag="VIJ87_14975"
     CDS             complement(<1..1456)
                     /locus_tag="VIJ87_14975"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY5445740.1"
                     /translation="MKVLLVNPEFPDTYWSFRHALPFEGKRSVFPPLSFMTVSSLIPR
                     SVERRLVDLNIESLKTSQIEWADMVFITGMLAQKESLHNVVQRAKRLGKQIVLGGPYV
                     TSTIEELPHADHIFQGEAETTLPQFFVDLERGEAKRVYKAIDRPPMSISPPPDFDVVD
                     LKRYSCMSVQYSRGCPFSCEFCDIIEIYGRVPRTKSNQQLLGEFDELQRRGWRGPVFI
                     VDDNFIGNKKNVRLLLPELVDWQRRHGHPFSLLTEASINLADDDELLNNMRDAGFRRV
                     FLGIETPVEESLKEAQKTQNRGNLLDSVKKIQSYGMEVMAGFIVGFDNDPEDIFERQI
                     EFIRESAIPLAMVGMLNALPDTQLWKRLEREGRLLGEDATGNNTISTLNFVTKMDAAK
                     LISGYERIMKTIYKPREYYQRALDSLKRTAHETAEPTPYNLLDEIKALFRLVLKLGVI
                     DSERKEFWRFFIQALRNHHDRMTESLRLAAMGYHF"
     gene            1550..>1774
                     /locus_tag="VIJ87_14980"
     CDS             1550..>1774
                     /locus_tag="VIJ87_14980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445741.1"
                     /translation="MSRNKKSSRKVWYWRNGNTTMVSSFEFPNVLAWTTWQTAALAAF
                     IAVNRCNMKRVPSNVKGLQGDPRHSSWLEET"
BASE COUNT          425 a          447 c          447 g          455 t
ORIGIN      
        1 gaaaatgata gcccattgcg gccaggcgca acgattcagt catgcgatcg tgatggttgc
       61 gaagagcctg aataaagaac cgccaaaact cttttcgctc gctgtcaatt actccgagct
      121 tgagcacgag tcgaaacagc gccttaattt catccagcag attgtacggc gtgggctcgg
      181 ctgtttcatg agcggttcgt ttcaacgagt cgagcgcgcg ctggtaatac tcgcggggct
      241 tatagatcgt cttcatgatt cgctcgtacc cgctgatcaa cttcgccgca tccatcttgg
      301 taacaaagtt cagagtgctg attgtattgt ttccggtagc gtcttcacca agcaggcggc
      361 cttcgcgttc caggcgtttc cacaattgag tatctggtaa tgcattcaac atccctacca
      421 tcgccagtgg aatcgcgctc tcgcgaatga actcgatttg acgttcgaag atgtcttcgg
      481 gatcgttatc gaaaccgact ataaagccgg ccatcacttc catgccgtag ctctggatct
      541 tcttgactga atcgagcagg tttccgcggt tctgagtttt ctgcgcttct ttcagactct
      601 cttcaaccgg tgtctcgatg cctagaaaca ctcgacggaa tccggcgtcg cgcatgttgt
      661 tgagcagctc gtcatcgtcc gcaaggttaa tgctggcctc agtcagaagt gaaaacggat
      721 gaccatgtcg gcgttgccaa tcaacgagct ccgggagtag cagtcttacg tttttcttat
      781 tgccgatgaa gttgtcgtcg acgataaaga ccggtccacg ccagccgcgg cgctgcaact
      841 cgtcaaactc accgagaagc tgctgattgc tcttcgtgcg cggaacgcgt ccgtagattt
      901 caatgatgtc gcaaaactcg cacgagaacg gacagccgcg tgagtactgg accgacatgc
      961 agctgtagcg cttaagatct actacatcaa aatccggagg tggcgagata gacattggcg
     1021 gacggtcaat agctttgtaa acgcgctttg cttctcctcg ttccaggtcc acgaaaaact
     1081 gcggcaacgt tgtttcagct tcaccctgga agatgtgatc tgcatgaggt agttcttcga
     1141 tcgtgctcgt gacatacggt ccgccgagca ctatctgttt gccaaggcgc tttgcccgct
     1201 gaactacgtt gtgcagcgat tctttctgtg ccagcatccc cgtgatgaat accatgtcgg
     1261 cccattcaat ctgcgacgtt ttcagcgact cgatattgag atcaacaagg cgtcgttcga
     1321 cggaacgcgg tattaggctc gacacagtca tgaaagacaa tggtggaaaa acggaacgtt
     1381 tgccctcgaa gggtagcgcg tgtcgaaaac tccaataggt gtccggaaat tccggattga
     1441 ccagtaatac cttcatttac agattcctcc cataccgctc gtgatggtag gtcataacga
     1501 ttatgtgacg ggtaatagtt gtgtaagaca ttaacctaaa tcatctttca tgagtagaaa
     1561 taaaaaatct tcacgcaaag tttggtactg gcgcaatgga aatacaacga tggtttcgtc
     1621 ctttgagttt ccgaatgtct tagcttggac gacgtggcag actgccgctc ttgctgcgtt
     1681 tattgcagtc aatcggtgta atatgaaaag agttccatca aacgttaaag gccttcaagg
     1741 ggacccaagg cactcatcat ggctggaaga gaca
//
LOCUS       DATCGC010001567         1967 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_56412, whole genome shotgun sequence.
ACCESSION   DATCGC010001567 DATCGC010000000
VERSION     DATCGC010001567.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1967)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1967)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1967
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56412"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1967)
                     /locus_tag="VIJ87_14985"
     rRNA            complement(<1..>1967)
                     /locus_tag="VIJ87_14985"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          400 a          601 c          454 g          512 t
ORIGIN      
        1 cgttgagcga tggcccttcc acgcgggacc accggatcac tatgaccgac tttcgtctct
       61 gctcgacttg tcagtctcgc agtcaggcgg gcttatgcca ttgcactcga cgaccgattt
      121 ccgaccggtc tgagcccacc atcgcgcgcc tccgttactc tttaggaggc gaccgcccca
      181 gtcaaactac ccaccataca ttgtcccgga cccggataac gggccgcggt tagacatcca
      241 tagtaataag ggtggtattt caagggtggc tccacctgag ctggcgccca ggtttcaaag
      301 cctaccacct atcctacaca tgccactacg aatgccaatg taaagctata gtaaaggtgc
      361 acggggtctt tccgtctaac cgcaggaacc ccgcatcttc acggggaatt caatttcact
      421 gagtctatgc tggagacagc ggggaagtcg ttacgccatt cgtgcaggtc ggaacttacc
      481 cgacaaggaa tttcgctacc ttaggaccgt tatagttacg gccgccgttt actggggctt
      541 cgattcagag cttgcacccc tcctcttaac cttccagcac cgggcaggcg tcagacccta
      601 tacgtcgtct tgcgacttcg cagagccctg tgtttttgat aaacagtcgc taccccctgg
      661 tctgtgccac ccccatacac ttgcgtgcaa aggggtcacg cttcttccga agttacgcgt
      721 gcaatttgcc gagttccttc agcatagttc tctcaagcgc cttggtatac tctaccagtc
      781 caccagtgtc ggtttcgggt acggactata agtgggagct atttcctgga accactccgc
      841 tgccagacca atccgataag gactgacaac tttaatgatc cgtcactacc tccaggctca
      901 cgaatattaa cgtgattccc atcgtctacg catttctgcc tcgacttagg ggccggctaa
      961 ccctgctcag attaacttta agcaggaacc cttggacttt cggcgggggt gtctctcaca
     1021 ccccttacgt tactcatgtc agcattcgca cttccgatac ctccaggtgc cctcacgggt
     1081 cacccttcgc aggcttacgg aacgctcctc tacagcgtac caactccgaa gagatggcac
     1141 acccgcagct tcggtagacg gctttagccc cgatacattt tcggcgcaga aacccttgtt
     1201 tagaccagtg agctgttacg ctttctttaa atgatggctg cttctaagcc aacatcctgg
     1261 ttgttttggg attcccacat cctttcacac ttagccacga attgggggcc ttagctgtaa
     1321 gtcagggttg tttccctctc cacgacggac gttagcaccc gccgtgtgtc tcccgagtag
     1381 tactcccagg tattcggagt ttggttaggt ttggtaatcc tgtggggacc cctagcccat
     1441 ccagtgctct accccctcga gtattcgtcc gaggctctac ctaaatagat ttcgaggaga
     1501 accagctatt tcctgccttg attggccttt cacccctatc cacagttcat ccgaggcttt
     1561 ttcaacagac accggttcgg tcctccagca ggtgttaccc tgctttcaac ctgaccatgg
     1621 atagatcgac aggtttcggg tctaatccga cgaactgaac gccctgttca gactcgcttt
     1681 cgcttcgcct acagctatcg ccttaagctt gctcgtcaga ctaagtcgca gacccattat
     1741 acaaaaggta cgccgtcacc cttgcgggct ccgactgttt gtaagcatcc ggtttcaggt
     1801 tctatttcac tccccttgtc ggggtgcttt tcacctttcc ctcacggtac ttgttcgcta
     1861 tcggtcatgc acgagtactt aggcttggag agtggtctcc ccatgttcag acaggatttc
     1921 tcgtgtcccg ccctactcta ggacaatcgt gatatctacg cgtacgg
//
LOCUS       DATCGC010001568         1220 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_323692, whole genome shotgun sequence.
ACCESSION   DATCGC010001568 DATCGC010000000
VERSION     DATCGC010001568.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1220)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1220)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1220
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_323692"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(85..>1220)
                     /locus_tag="VIJ87_14990"
     CDS             complement(85..>1220)
                     /locus_tag="VIJ87_14990"
                     /inference="COORDINATES: protein motif:HMM:NF018269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="di-heme oxidoredictase family protein"
                     /protein_id="HEY5445742.1"
                     /translation="KEMLADEITRDLRAIRSQAGKEWHATRRTITKSLDSKGINFGTI
                     TFLSDGQIDTSQVRGVDPDLRVRPFFAHGGKISIREFLVGAFNDEMGLQSVDPELMQA
                     HNGSRIVTRSGMVLDGSTDRLEAPPTDLVSDDPDHDGMTNEIPASLVDFMEFYLLNYF
                     KPGLYQQTRETDQGRRFFNQVGCADCHIADLKIDRDRRVADVETVFDPERGIFNSLFA
                     TASPLFNTVDDHLGFPALKEPRLEPFLVKNIFTDFKRHDLGSSFYERDFDGTTRKEFL
                     TTPLWGVGSTGPYGHDGRSINLTEVIMRHGGEAEVARRAFAKLPVEQQSRVIAFLNSL
                     VIFPPDDTASNLDPGNRNAFNFPQFGHGSIKLSALFNNPTDPE"
BASE COUNT          305 a          324 c          311 g          280 t
ORIGIN      
        1 ccgcccgcat caccggcggc gtgcaggcaa tcataaatcc catagcaatc aaatagtcca
       61 aggatggacc tgatcaattc attactattc cggatcggtc gggttgttga atagcgcgct
      121 cagcttgatg ctgccgtgcc cgaactgcgg gaagttaaag gcgttccgat tgccaggatc
      181 aaggttagag gcagtgtcgt cgggaggaaa gataaccagc gagtttaaga atgcgatcac
      241 gcgcgattgt tgctccactg gcagcttcgc gaatgctctg cgagcaacct cagcctcacc
      301 accgtgacgc ataatcacct ccgtcaaatt aatgctgcgt ccatcgtggc cgtatggtcc
      361 agttgaacca acgccccaga gtggggttgt caaaaactct ttgcgggttg tcccgtcgaa
      421 gtctctctca tagaagctcg atcccaaatc gtgtcgcttg aaatcagtga agatgttctt
      481 gactaaaaac ggttccagtc gaggttcttt caacgccggg aaaccaagat gatcgtcaac
      541 cgtattgaat agcggactcg cggtggcgaa aagactgttg aagatgccac gttccggatc
      601 aaacaccgtt tcgacatccg caacacgtcg atcgcggtcg atttttagat cggcaatatg
      661 gcaatcagca caaccaacct ggttaaaaaa tcggcgacct tgatctgtct ctcgagtttg
      721 ttgatagagt ccaggcttga agtagttgag caaataaaac tccatgaagt cgacaaggct
      781 ggcgggaatt tcattcgtca tcccgtcatg atccggatca tcactgacga gatcggttgg
      841 tggcgcctcc agccggtcgg ttgaaccatc aagcaccata ccagagcgcg tgacgattcg
      901 tgagccgttg tgtgcttgca tcagttccgg atcgacggac tgcaagccca tctcatcatt
      961 gaacgcaccg actaaaaact cgcgtatcga gatctttcca ccatgggcaa aaaacggacg
     1021 cacgcgcagg tcgggatcaa cgccacgtac ctgcgaggta tcgatctgac catcgctaag
     1081 aaaagtgatt gtgccgaagt taatgccctt gctgtccagc gacttcgtaa tcgtgcgacg
     1141 agttgcatgc cattccttac cagcctgaga acgtatcgca cgcaggtcgc gggtaatctc
     1201 gtccgcaagc atttctttca
//
LOCUS       DATCGC010001569         2036 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_154413, whole genome shotgun sequence.
ACCESSION   DATCGC010001569 DATCGC010000000
VERSION     DATCGC010001569.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2036)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2036)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2036
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154413"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2036
                     /locus_tag="VIJ87_14995"
     CDS             <1..>2036
                     /locus_tag="VIJ87_14995"
                     /inference="COORDINATES: protein motif:HMM:NF039196.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HEY5445743.1"
                     /translation="EGKLGGQATVKGVGGTWKDLTDSVNQMAGNLTAQVRNIAEVTTA
                     VAKGDLSRKITVDVKGEILELKNTINTMVDQLNSFASEVTRVALEVGTEGKLGGQAKV
                     QDVGGTWKDLTESVNQMASNLTAQVRNIADVTTAVAKGDLSKKITVNVAGEILELKDT
                     INTMVDQLNSFASEVTRVALEVGTEGKLGGQAKVQGVGGTWKDLTDSVNQMGSNLTAQ
                     VRNIAEVTTAVAKGDLSRKITVDVKGEILELKNTINTMVDQLNAFGSEVFRVAREVGS
                     EGKLGGQADVPGVEGLWKDLTDSVNKMASNLTSQVRNIAEVTTAVANGDLSRKIEVDV
                     KGEILELKNTINTMVEQLRSFASEVTRVSREVGTEGKLGGQAHVPGVGGTWKDLTDSV
                     NQMAGNLTAQVRNIADVAIAVANGDMSRKITADVRGEILQLKETLNTMVDQLRAFASE
                     VTRVAREVGTDGKLGGQAFVPGVAGTWKDLTDSVNQMTGNLTSQVRNIAEVTKAVASG
                     DLTKKVTIDVKGEIFDLKNTINTMVDQLNSFAFEVTRVAREVGTEGKLGGQAEVQGVA
                     GTWKDLTDSVNMMASNLTNQVRGIAKVVTSVATGNLKQKLSIVSRGEVAQLTDTINEM
                     IDTLALFADQVTNVAREVGVEGRLGGQASVPGASGIWKNLTENVNQLAENLTTQV"
BASE COUNT          609 a          398 c          594 g          435 t
ORIGIN      
        1 gaaggaaaac tgggcggaca ggcaacagta aaaggcgtcg gaggaacatg gaaagatctt
       61 accgactctg taaaccaaat ggcaggaaac ctcactgcac aagtgagaaa tatcgcggaa
      121 gtaacgacgg cggtagcgaa gggggacttg tcaagaaaaa taacggtcga cgtgaaaggg
      181 gagatcctcg aactgaagaa tacgatcaac accatggtgg atcagctcaa ttcgtttgca
      241 tcggaagtta cccgtgtggc gcttgaagta ggtactgaag gaaaattggg tggacaagca
      301 aaagttcagg atgtgggtgg tacctggaag gaccttacag agtcagtaaa ccaaatggca
      361 tccaatctta ctgcgcaggt gcgcaacatt gctgatgtga cgacggcagt tgcgaaaggt
      421 gacctttcaa aaaagatcac cgtaaatgtg gccggtgaaa ttcttgaatt gaaggatacc
      481 atcaatacga tggtggacca attaaactca tttgcttctg aagttactcg tgtggccctt
      541 gaagtgggta cggaaggtaa actcggcggt caggcaaaag tgcagggtgt gggtggtacc
      601 tggaaggact tgaccgattc agtgaaccag atgggatcaa accttactgc acaggtacgc
      661 aatatcgctg aggtaacaac tgccgttgcg aaaggcgacc tgtccaggaa gataacggtg
      721 gacgtaaaag gagaaatcct ggaattgaaa aataccatca acacgatggt ggaccaattg
      781 aatgcatttg gttcggaagt attccgtgtg gcacgtgaag taggttccga aggaaagctc
      841 ggaggccagg cagatgttcc gggcgtggaa ggtctctgga aggatttgac cgactcggta
      901 aataagatgg catctaatct tacgtcgcag gtgcgtaaca tcgccgaggt tacaaccgct
      961 gttgcaaatg gtgacttatc gcgcaaaatt gaagtggatg ttaaaggtga gatcctggaa
     1021 ctgaagaaca ccattaacac gatggtggaa caattgagat catttgcatc agaagtaacg
     1081 cgtgtatcgc gcgaagtagg tacagaaggt aaactcggtg gacaggctca cgtaccgggt
     1141 gttggtggta catggaaaga cttaactgat tccgtaaacc aaatggcagg taacctgacc
     1201 gcacaggtgc gtaacatcgc agacgtggcg attgctgtgg caaatggcga catgtcgaga
     1261 aaaattacag cggacgtacg tggagaaatc ctgcagctga aagaaacact aaatacgatg
     1321 gtggaccagt tgcgtgcatt tgcttctgaa gtaacacgtg ttgcacgtga agtgggaacg
     1381 gatggtaaac tcggtggcca ggcatttgta ccaggagttg ccggcacatg gaaagatctt
     1441 accgattcag taaaccagat gacgggtaat cttacttcac aggtgcgcaa tatcgccgaa
     1501 gttacaaaag cggtggcctc cggtgactta acaaagaagg ttaccattga cgtaaaaggc
     1561 gaaattttcg atcttaaaaa taccattaat acgatggtgg accagttgaa ctcatttgcg
     1621 tttgaggtga cgcgtgttgc ccgcgaagtg ggaacagagg gtaaactggg tggacaagcc
     1681 gaggtgcagg gtgtggcagg aacatggaag gatcttacgg attcagtaaa catgatggca
     1741 tcaaatctta ctaaccaggt tcgcggtatt gccaaagtgg ttacctcggt tgctaccggt
     1801 aacctgaaac aaaaactttc gattgtctcc cgcggggaag ttgcgcagtt aacggatacc
     1861 atcaatgaga tgattgacac actggcgctg tttgcagacc aggttacaaa cgtggcccgt
     1921 gaagtgggcg tggaaggaag attgggaggc caggcatccg tgccgggagc atcgggtatc
     1981 tggaaaaacc ttacggagaa tgtgaatcag cttgcagaaa atctaacaac gcaggt
//
LOCUS       DATCGC010001570         1180 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_221959, whole genome shotgun sequence.
ACCESSION   DATCGC010001570 DATCGC010000000
VERSION     DATCGC010001570.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1180)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1180
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221959"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(141..>1180)
                     /locus_tag="VIJ87_15000"
     CDS             complement(141..>1180)
                     /locus_tag="VIJ87_15000"
                     /inference="COORDINATES: protein motif:HMM:NF014893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEY5445744.1"
                     /translation="TTQIPGFRDCMGAKVVAIASRQRARAEAVAKEFDIGNVCDDWHQ
                     LVAHRDVDLVSIVTPPATHMEITLAALEQRKAVLCEKPMAMNAEQSARMVEQARAAGV
                     LALVDHELRFLNSRRTMRAMLQSGAIGQVRHCNYIFRSDYRGVLDRPWDWWADSQMGG
                     GTLGAIGSHVIDSFSWVLGTEITSVLGMLSTHIKQRPDKTSGATRVVTSDDEAKLLFR
                     FADGAVNASATGAASLSVVESGKYENRLEIYGTTGALMVEETGELWHSPVGSGAWRPV
                     QVDQDHMAQGMRESSWSRGFTAFSGAIVEAMRSGKRSVRDAATFEDGHRTQLVLDAAR
                     ASNESGSWVSL"
BASE COUNT          275 a          360 c          277 g          268 t
ORIGIN      
        1 tttgtacttt gagctttgtg ctttgtgctt tgttctcata atgcaatcag tccgaatcct
       61 tcgccgctaa agacgaagca caagcacaaa gttcaaagcg ctaccaaagg cccgaatcgt
      121 atgtgagtct tatcgccgaa ctaaagtgag acccaacttc cactttcatt tgaggcgcgc
      181 gccgcgtcga ggactagttg cgtgcggtgt ccatcttcaa aagtcgcggc atctcgaacg
      241 cttcttttac cagatcgcat agcttcgaca attgcgcccg agaatgcggt gaacccgcgg
      301 gaccaactgc tttcgcgcat cccttgcgcc atgtgatcct gatcaacctg gaccggccgc
      361 cacgcgccag aaccaacggg tgaatgccac agttcgcctg tctcctcaac catcaatgcc
      421 ccggtggtgc cgtagatctc aagacggttt tcgtactttc cggattcaac tactgacaaa
      481 gaagccgcac ctgtagcgct ggcattaacg gctccgtcag caaaacgaaa caacagcttc
      541 gcttcatcat cagacgtaac tacgcgagtt gcgccactcg ttttgtcagg ccgttgtttg
      601 atgtgagtcg agagcattcc gaggacagaa gtaatttcag tgcccagcac ccaactaaac
      661 gagtcgatga cgtgcgagcc gatcgccccc agcgtgccac ctcccatttg tgaatcagcc
      721 caccagtccc aaggcctatc aagaacacct cgatagtctg aacgaaaaat ataattgcaa
      781 tgcctgacct gccctatcgc gccactttgc agcatcgcac gcatcgttcg ccggctattc
      841 aggaaacgta actcgtggtc caccaaagcc aacacaccgg ccgctcgcgc ctgttcgacc
      901 atgcgcgcag actgttccgc gttcatcgcc attggctttt cacaaagcac tgctttgcgc
      961 tgctcaaggg cggcaagagt aatctccatg tgagttgccg gtggcgtgac gatgcttaca
     1021 agatcgacgt cgcgatgtgc cacgagttgg tgccaatcat cacagacgtt gccgatatca
     1081 aactctttag cgacagcctc cgctcttgct cgttgccgac tggcaatggc aacaaccttc
     1141 gctcccatac aatcccgaaa gcccgggatc tgagtcgttc
//
LOCUS       DATCGC010001571         1169 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_89977, whole genome shotgun sequence.
ACCESSION   DATCGC010001571 DATCGC010000000
VERSION     DATCGC010001571.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1169)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1169)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1169
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89977"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..530)
                     /locus_tag="VIJ87_15005"
     CDS             complement(<1..530)
                     /locus_tag="VIJ87_15005"
                     /inference="COORDINATES: protein motif:HMM:NF012200.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="choice-of-anchor D domain-containing protein"
                     /protein_id="HEY5445745.1"
                     /translation="MYKLQIRPPSGRELATPHSLPSENSSQLSQRSADHSLQIFQPKF
                     NPGNTFLSLLICLLSVTFTGCGGLVWNPSVVGSITPTPGTVKFGPVLVGKKATTRVAL
                     GNQSSSPITISKIDVSGPSFSLDQGNVLPLTLAAGSTLSVNVHFVPSATGTQTGRVMI
                     ASNSTTSPNAVVALTGT"
BASE COUNT          273 a          255 c          335 g          306 t
ORIGIN      
        1 gttccggtca gggcaacgac tgcattcggg ctggttgtgg agttgcttgc gatcatcacg
       61 cgtccagtct gcgtcccagt ggcagaaggg acgaaatgca cattcacgct taaggtcgaa
      121 cctgctgcga gagtcaaagg aagaacattg ccctggtcaa gggaaaacga aggcccgctc
      181 acgtcaattt tcgaaattgt tattggtgaa gagctctgat tgccgagtgc aactctggtg
      241 gttgccttct taccaaccag tactgggccg aatttgactg ttcctggtgt cggcgtgatg
      301 gatcctacga ccgacggatt ccaaaccaag cctccacaac cggtgaaggt gacggacagc
      361 agacagataa gaagagaaag gaaggtgttc ccgggattga actttggttg aaagatttgt
      421 agggaatgat ctgcgcttcg ttgagagagt tgcgagctgt tttcggatgg caaagaatgc
      481 ggtgttgcaa gttcgcggcc cgatggcggc cggatctgaa gcttgtacat ctacttctcc
      541 tccgcaggtg ccctggcacc tgttattttg gtcgacgcgt agaaaaatgg gagcggccag
      601 cgatgcactt gtgctggaaa aaatttgccg aatgctggac gcagttgaag agcacgactt
      661 ccgacaccga acgagtttcc tgctggtatg aattttttcg aatggcagtg ctttctcctg
      721 gtgattcttt ggcggtgtga cttagcgaac gtctgtgcgc ctgatcatga caaagaacac
      781 gtgtacggag cgagatggcc cgttgatcga ccaatgggga atttgagtgg aatctctgaa
      841 gagtttgaat atgcccggaa ttgttagatg gcgagtaact ccgcgctgca gtgcgtgacc
      901 tcccctcctt ctgcgcgata cgtgcagacg aatctgcatt tcgaaattcg caacgcgtcc
      961 ggcatgtatg cgtaattttg gcccagtatc agtgctttcg tgagcaaagt cagtgccaaa
     1021 gggttgcaca cgattggaaa attattttgg tttttgattt gtgcaactta gataggctct
     1081 atcggcgaga ttttcatgga gtattacgca taactgtgta aatgtttcca tgtcgggtat
     1141 tatctactca gtaaatgatt cgggtggcc
//
LOCUS       DATCGC010001572         1499 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_288178, whole genome shotgun sequence.
ACCESSION   DATCGC010001572 DATCGC010000000
VERSION     DATCGC010001572.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1499)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1499)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1499
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_288178"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1499
                     /locus_tag="VIJ87_15010"
     CDS             <1..>1499
                     /locus_tag="VIJ87_15010"
                     /inference="COORDINATES: protein motif:HMM:NF024754.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEY5445746.1"
                     /translation="QAVNAAFRPVMSSDSSTQAHYVPLSPSRSGIDSQPALIALPVSQ
                     PYGDYGKIVNHRIDESLPKDVAAFVNWLINESGWTVTERGQSEDPVKLKARHICLLFR
                     RLRHYSTDVTRGYVQALENFQIPHLLVGGSSFHSREEVEAIRNALTAIEWPDEELAVF
                     ATLRGPMFAFTDAELLSYRTLCTTLHAFKQPPDDLPESLNEVAGALAILRELHSKRNR
                     RPIAETLQQLLEVTRAHAGFANWPTGEQALANIMRLSDMARRAERNGLISFRAFVDWL
                     DEQAESGDIGDAPIMEEGVDGVRIMTVHKAKGLEFPVVILCDITAKDSREPSKWIDQA
                     AGLSAMQLAGCTPIEVQEHASQEVELEKEEATRILYVAATRARDLLVVCATGDERYDG
                     WLATLNPVLYPAESTSFNPQTNTPVGCPPFSDDTVVSRPQRAFRKPGSVTPGLHQPKV
                     GDHEVVWWDFSALEEASQDRSGTKLNDFLKQDEAKLRAQEGVVAHEAWK"
BASE COUNT          357 a          388 c          404 g          350 t
ORIGIN      
        1 aacaagctgt gaacgccgcc tttcgtccgg tgatgtccag cgactcgtcg acacaagcgc
       61 actatgtgcc tttgtcaccc agtcgcagcg gcatcgactc gcaaccagct ttgatagcgt
      121 tgcctgtgtc gcagccttac ggcgactacg gaaagattgt gaaccacagg attgatgagt
      181 ctttacccaa agatgttgca gcctttgtga attggctcat caacgaaagt ggttggaccg
      241 ttactgaacg aggacaatcc gaagaccctg taaaactaaa agctcgacac atctgtcttt
      301 tgtttcgacg cctgcgtcat tactcaactg atgtgactcg cggatatgta caggcacttg
      361 agaacttcca gataccgcat ctattggtcg gaggaagttc tttccactcg cgcgaagagg
      421 tagaggcgat tcgcaacgcg ctcacggcca tcgagtggcc cgatgaggaa cttgcagttt
      481 ttgcgactct acgcgggcca atgttcgctt tcactgatgc ggagttgctc tcttatcgaa
      541 ccctgtgcac tacgttacat gccttcaaac aaccgcctga cgacctgcct gagtcgctta
      601 atgaagttgc gggagcactc gcgatcttgc gtgagcttca cagtaaaaga aatcgacgtc
      661 ctattgcaga gacgcttcag caactgctcg aggtcacgcg tgcgcacgca ggatttgcga
      721 actggccaac cggcgaacag gcgctcgcca acatcatgcg actctccgac atggcgcgtc
      781 gtgccgaacg taacggcttg atttcgttta gagcttttgt tgattggtta gatgaacaag
      841 ctgagagtgg cgacatcggc gacgcgccaa taatggaaga aggtgtcgat ggggttcgca
      901 tcatgactgt gcacaaagca aagggcctcg agtttccggt tgtaatcctg tgcgacatca
      961 ccgcgaaaga ctcacgtgaa ccgtcgaagt ggatcgatca ggccgcgggt ttgagtgcga
     1021 tgcaacttgc aggttgcacg ccgatcgaag ttcaagagca tgcaagtcag gaagttgaat
     1081 tagaaaagga agaggcgacg cgaattcttt acgtcgcagc aactcgcgct cgcgacttac
     1141 tagtcgtctg tgctactggc gacgaacgtt atgatggttg gttggcgaca ctcaatccag
     1201 tcctttaccc cgcggaatcg acgagcttca atccgcaaac gaacactcct gttggttgtc
     1261 ctccgttttc agacgacacc gtcgtttcca gaccacagag ggcctttcgt aaacctggtt
     1321 ccgttactcc gggtttgcat cagcccaagg ttggcgacca cgaagttgtc tggtgggact
     1381 tttctgctct tgaagaagca tcgcaagacc gcagtggtac caagttgaat gattttctaa
     1441 aacaagacga agcaaagctt cgcgcccagg aaggagttgt tgctcacgag gcgtggaag
//
LOCUS       DATCGC010001573         2021 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_456411, whole genome shotgun sequence.
ACCESSION   DATCGC010001573 DATCGC010000000
VERSION     DATCGC010001573.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2021
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_456411"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            330..1232
                     /locus_tag="VIJ87_15015"
     CDS             330..1232
                     /locus_tag="VIJ87_15015"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: protein motif:HMM:NF000594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HEY5445747.1"
                     /translation="MPALEDLLHKSIPELNEMFVERRRPVPKGLLEALEIDHRQGAQQ
                     LAKRIRQRYRSNRSEGQRLHSLLRFEIELWADGFGMVAGVDEAGMAPLAGPVVAGAVI
                     LPQNYKLRGLNDSKKILDPERRDELAIQIKQDAICWAVGFAEVEEIDKINIYHAGLLA
                     MQRAVQGLNSNPDFILVDARKIPNCTTPQRGIIRGDSLSASIAAASIIAKTTRDAHML
                     ELDTLYNGYGLASHKGYPTPEHCRALKELGALPIHRRSFARVRQALGLDPIQNELFAD
                     EPIDSENFADDSEMAKELAAAQVL"
     gene            1299..1970
                     /locus_tag="VIJ87_15020"
     CDS             1299..1970
                     /locus_tag="VIJ87_15020"
                     /inference="COORDINATES: protein motif:HMM:TIGR02777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase ligase N-terminal
                     domain-containing protein"
                     /protein_id="HEY5445748.1"
                     /translation="MASLTEYKKKRKFDKTPEPGPTKKKTRTGRMFVVQKHRATQLHY
                     DFRLEADGVLKSWAVPKGPSLDPTVKRLAMEVEDHPVDYAKFEGVIPEGEYGGGTVMV
                     WDYGTYLPEKKGEDVSLALAKGELKFSLDGQKLKGSWVLVRTRGRQWLLLKHRDYYTT
                     TEEVTELAPVSILTRRTLAEIAEDEGGNIRKASSGDPKQIPKRSGVKRRKKGAKAKVW
                     HSKAR"
BASE COUNT          562 a          509 c          511 g          439 t
ORIGIN      
        1 gacgtattcg cagaaagagt ccaacagcga atagcaggtt accaatgttg cacatccaca
       61 tgaggtgacc taactcatta atccgccagt agtgaacagc ctgcgcgaga aagaagacta
      121 gcggaaggat cccgagccaa cgatttgagg gttcaagtaa tctgttaagg gtcaaagttt
      181 gggatcctcg gggaatttgt gcgcaagaat aacatcacac cggtaagggt tatcgaaaaa
      241 acctgcaggt gtcttgacat tgtgcgtgcc tgacaagaga ctaaccgcac ttaacgacat
      301 cgaggattct gggtttacaa tttcacaaca tgccggcgct tgaagatcta ctccacaaat
      361 ccatccctga gctgaatgag atgtttgtcg aacgtcgacg acctgtccct aaaggtttac
      421 ttgaagcgct agaaatcgat catcgacaag gagcacagca attagccaaa cgcattcgcc
      481 agcgatatcg aagtaatcga tccgaagggc agcgcctcca ttccttactt cgttttgaaa
      541 tcgaattgtg ggctgatggc ttcgggatgg ttgccggagt ggatgaagct ggcatggcac
      601 cactggcggg cccagtcgtc gcgggcgcag taatcctgcc tcagaattac aagcttcgtg
      661 ggctaaacga ttccaagaaa attctcgacc ccgaacggcg tgatgaacta gcaatccaga
      721 tcaaacagga cgcaatttgc tgggccgtcg gtttcgctga ggttgaggag atcgacaaga
      781 tcaatatcta tcacgctgga ctactggcaa tgcaacgggc tgtgcaaggt ctcaattcca
      841 atccagactt cattcttgtc gatgcccgca aaatacctaa ttgcacaaca cctcaacgtg
      901 gaatcattcg cggcgactca ttgtcagcga gcatcgctgc tgcatcaatc atcgctaaga
      961 ccactcgcga cgcacacatg ctagaactcg acactctcta caacggttac ggcctggctt
     1021 cacacaaggg ttatccaacc cctgaacact gccgcgcact aaaagaactc ggagcgcttc
     1081 ccatccaccg tcggagcttt gcgcgcgtac gtcaggcact cgggcttgat cccatccaaa
     1141 acgaactgtt cgcggatgag ccaatcgact ctgagaactt cgcagatgat tccgagatgg
     1201 caaaggagct tgccgctgcg caagttctct aacgcccgtt agaatcttca tcgtttcatt
     1261 acacttcagg aatcacttta ggcttcactt ccctgtgtat ggcatcgctt accgagtaca
     1321 aaaagaaacg taagttcgat aagacccccg agcccggtcc gacgaaaaag aagaccagga
     1381 ccggaagaat gtttgtcgtc caaaagcacc gtgctactca gcttcactat gacttcagac
     1441 ttgaagcaga tggagtattg aaatcctggg ccgtacccaa agggccatca cttgatccaa
     1501 cagtgaagcg tcttgcgatg gaagttgaag atcatccagt tgattacgcg aagttcgaag
     1561 gtgttattcc tgaaggtgaa tacggcggcg ggacagtaat ggtatgggac tacggaacat
     1621 acttacccga aaagaagggt gaagatgtct ctttagcttt agcaaagggc gagctgaaat
     1681 tctcgctcga cggtcaaaag ctaaagggtt cgtgggtatt ggttcgaaca cgtggccggc
     1741 aatggctatt gctcaaacac cgggactatt acacgacgac cgaagaagtg actgagttgg
     1801 ctccagtctc aattcttact cgccggactc tggctgagat tgcggaggac gagggaggta
     1861 acatccgaaa ggcttcgagc ggtgatccca aacagatacc aaaacgcagt ggagtaaagc
     1921 gacgaaagaa gggggcgaaa gccaaggtct ggcactccaa ggccaggtag ctacttgaag
     1981 taaactctta gccttccaca tcaagcagtc ctcgataact c
//
LOCUS       DATCGC010001574         1432 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_190586, whole genome shotgun sequence.
ACCESSION   DATCGC010001574 DATCGC010000000
VERSION     DATCGC010001574.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1432)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1432)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1432
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_190586"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..202)
                     /gene="eno"
                     /locus_tag="VIJ87_15025"
     CDS             complement(<1..202)
                     /gene="eno"
                     /locus_tag="VIJ87_15025"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000103948.1"
                     /note="catalyzes the formation of phosphoenolpyruvate from
                     2-phospho-D-glycerate in glycolysis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEY5445749.1"
                     /translation="MSWIKAVFAREILDSRGNPTVEAEVILEDDTIGRAAVPSGASTG
                     EHEAVELRDGDKKRYGGKGVLKA"
     gene            complement(333..>1432)
                     /locus_tag="VIJ87_15030"
     CDS             complement(333..>1432)
                     /locus_tag="VIJ87_15030"
                     /inference="COORDINATES: protein motif:HMM:NF013741.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HEY5445750.1"
                     /translation="EPVANKIAHEGTRANYLAHLMAFVIAFSLISFSHILLGELVPKM
                     FALERAETVAVLTARPLELFAKVFRAPLWLLNKAGAAIGRMVGLSSSMEQSSVYTEAE
                     LRQLVDVSRESGHLRAEERRLIHRVFEFSDTVVREAMVPRTEMAAITHTCTLEQITKA
                     FDQHRYSRLPVYRESFDDVIGFIHSKDVMPYLLHPDKFRLQDVLQPPLYVVDTARLEH
                     VLRQMQKAKMHFGFVVDEHGGLEGIITLEDLLEEIVGEISDEHDEEVNEQIDQLSDHT
                     FMLAGGLAVRDLNRRLKLTLPESEAYTTIGGFLMTEAGRVLKPGEVIHYADLVFHVER
                     VEKRRIMRVRLEILETASEENETRVANSVGK"
BASE COUNT          343 a          376 c          351 g          362 t
ORIGIN      
        1 cggcttttag aacgccctta ccaccgtagc gcttcttatc accatcacgt agctcgactg
       61 cctcgtgttc gcccgttgaa gctcctgaag gcacggcagc gcgcccgatt gtgtcgtctt
      121 ccaaaatgac ttctgcttcg actgtgggat tgccacgtga gtcgaggatt tcgcgcgcga
      181 atactgcctt gatccaactc atgaataact cctgaagatg gggaatctga cttgcgcgcc
      241 aactttaaca tgtaaggggc gcagacttca gtctgtgatg attgattaga ttaaggttgg
      301 agcggagaaa ctcagactaa agtctgtgta aattatttgc cgactgagtt agcgacccgg
      361 gtttcgtttt cctctgaagc cgtttcaagt atttcaagtc ggacgcgcat tattcgtcgc
      421 ttttcaacac gctctacatg gaataccagg tcggcgtaat gaattacttc cccaggcttg
      481 agaacgcgac cagcttcggt catgaggaac ccgccaatcg tcgtgtaggc ctctgattca
      541 ggaagcgtga gcttcaatcg tcgattgaga tctctcacgg ccaaaccacc cgccaacatg
      601 aaggtatggt ccgatagttg atcaatctgt tcgttgacct cttcgtcgtg ttcgtctgat
      661 atttctccaa caatctcttc aagcagatct tcgagagtaa ttattccttc cagtccacca
      721 tgctcgtcga ccacaaatcc gaagtgcatc ttggctttct gcatctgccg caacacgtgt
      781 tcgagtcgag ctgtatccac gacgtaaagc ggtggttgaa ggacatcctg cagtcggaac
      841 ttgtccgggt gaagaaggta aggcattacg tctttactgt ggatgaatcc gatcacatcg
      901 tcgaatgatt cacggtagac cggtaaacgt gaatatcggt gctggtcgaa ggctttagtg
      961 atctgttcca gtgtgcacgt atgagtgatg gctgccattt cggtgcgagg caccattgct
     1021 tcgcgaacca cagtatccga aaactcaaaa acacgatgta tcagccgccg ttcttcggcg
     1081 cggagatggc cactctcacg actcacatcc accaattgcc gtagttcggc ttccgtgtat
     1141 accgaggatt gttccatcga tgaactcaaa ccaaccattc gaccaattgc cgcacccgcc
     1201 ttattcagta accagagagg cgcacgaaat actttggcaa acagttccaa cggcctggca
     1261 gtaaggactg caaccgtctc cgctcgctcg agagcaaaca tcttcggcac taattcaccg
     1321 aggagaatgt gagaaaaact gatcagtgag aaggcgatca cgaaggccat cagatgcgct
     1381 aagtaatttg cgcgggtgcc ttcatgggcg atcttgtttg caaccggctc ca
//
LOCUS       DATCGC010001575         2335 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_222021, whole genome shotgun sequence.
ACCESSION   DATCGC010001575 DATCGC010000000
VERSION     DATCGC010001575.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2335)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2335)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2335
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222021"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..743
                     /locus_tag="VIJ87_15035"
     CDS             <1..743
                     /locus_tag="VIJ87_15035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445751.1"
                     /translation="PQYDATVHLLQEGELHALLDGYTETHYQTNWVEAYDYGQAQPSC
                     YMLGFVTPEQHVIICDGFYRKEMTLDDQIAAIRRIRADWCVDLDEMHKIHADPSIFGR
                     KTVNRRTVGKTVADMFKEDNIYMKRGNSDINNGVVKVGAYLNINRQLLHPIKRVAGSP
                     RLFVNAKLDWWTDEVAGYFWQQSTSGERIDKPIDRNDHAMDATKYLLSEMPDIGKYAI
                     PQDQRVPSWMLWQERDKDTENPRRHRYG"
     gene            736..>2335
                     /locus_tag="VIJ87_15040"
     CDS             736..>2335
                     /locus_tag="VIJ87_15040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445752.1"
                     /translation="MAEEYEPGEEYNRVATPPSDVNTYDGVMSSPDEVESTSPMYRMI
                     GESKIPVSKHRGPLWRSRYDQGKAAMSKNVDAWSEAYRYYRHDHTRDNASSRGDEEMA
                     AGKPLQGTMESTENVVFANVSALVPMLFTKNPEAEFTVEDKEDEPRARVVEKLVNTLA
                     AKKTQPGLNLKRKVKRNIVSTTLTNIGWFEVGYTLRENSSEAALEEVQRLSAELEQAK
                     SQKDIKECEGKLLALEETIDMLTPSGPWVKVRRPDQIIVDTTATELDLSGQCNWIMIE
                     DLMYTSLLRARFGRKKPDSDEWESVFSPSNVIKAGVSPDQGERGQTDNFQLFSYSTSE
                     YSKYGYADQRSFLAAQMTKVVYVWDKVTRRVELYNCNDWCYPLWVWDDPYALDQFFTV
                     VPMEFHTDPITMYAKGEVTYYLDQQDDINIINNEWAKVRKFAAGKVVFDKNSLKDSSV
                     LESLINGTTDTNVIGVDLPEGKKLSDILGPLLPPSADAMKFFDKKPTMEAIDRLSGVA
                     SVQRGVEYKTNTTNRAIESYESQVQ"
BASE COUNT          673 a          562 c          600 g          500 t
ORIGIN      
        1 atcctcaata cgacgcaacc gtacacctac tgcaagaggg tgagttgcac gcgttgctcg
       61 acggctatac tgagacacat taccaaacaa actgggtaga agcatacgac tacggtcaag
      121 cgcagccttc atgttatatg ctaggcttcg ttacaccaga acaacacgtc atcatatgtg
      181 atgggttcta tcgcaaagag atgacacttg atgatcagat tgcagctata cgccgtataa
      241 gagcagattg gtgtgttgac ttagacgaga tgcacaagat acacgctgat cctagcatct
      301 tcggtcgcaa gacagtgaac aggcgcacag ttggtaaaac agttgccgat atgttcaaag
      361 aagacaacat ctacatgaag cgtggcaaca gtgacatcaa taatggcgtc gtcaaggtcg
      421 gtgcctacct caatatcaat agacagttgc tacatcctat caagcgtgtc gcaggctcac
      481 cacgtctctt tgttaatgct aaacttgact ggtggaccga tgaagtcgct ggctacttct
      541 ggcagcaatc tactagcggc gagcgtattg ataagcccat cgaccgcaac gatcacgcta
      601 tggacgcgac caagtacttg ttgagcgaga tgcctgacat aggcaagtac gctatccctc
      661 aagaccagcg cgtaccatcg tggatgctgt ggcaggagcg cgacaaggac accgagaacc
      721 cacgtaggca cagatatggc tgaagaatac gaacccggtg aagagtacaa ccgtgttgct
      781 actccaccta gcgacgtaaa cacctacgac ggtgtgatgt cgtcgcctga tgaggtcgaa
      841 agcacgtcac ctatgtatcg catgataggt gagagtaaga tacctgtgtc taaacaccgc
      901 ggcccgttgt ggcgtagtcg ctacgaccaa ggtaaagctg cgatgagtaa gaacgtcgat
      961 gcttggtctg aagcgtatcg ctactaccgt catgatcaca cacgtgacaa tgcgtcgtcg
     1021 cgtggtgatg aggagatggc agcaggtaag ccgttgcaag gtacgatgga gagcacagag
     1081 aacgtcgtgt tcgccaatgt cagtgcgctc gtcccgatgt tattcactaa aaaccccgaa
     1141 gcggagttca cagttgaaga caaagaggac gaaccccgtg cgcgcgtagt ggaaaagctc
     1201 gttaatacat tagcagctaa aaagacccag cccggcttaa acctcaagcg taaagtcaaa
     1261 cgtaatatag tcagcacaac cctaacgaac atcggatggt tcgaagttgg atacacccta
     1321 cgcgagaaca gcagtgaagc ggcgttggaa gaagtacagc gtctgtctgc tgaacttgag
     1381 caggctaaat cacagaagga catcaaggag tgtgaaggca agctgcttgc gcttgaagag
     1441 acaattgaca tgctcacgcc atcaggtccg tgggtgaagg tacgtagacc tgatcagatc
     1501 attgtcgata caacggcgac agaattagac ctgagtggtc agtgcaattg gataatgatc
     1561 gaagacctca tgtatacgtc gctactgcgt gcgaggttcg gtcgcaagaa acccgatagc
     1621 gatgagtggg agagcgtgtt ctcacctagc aacgtcatca aggctggtgt atcgccagat
     1681 cagggtgaac gtggtcagac agacaacttc caactcttct catactccac ctcggagtac
     1741 agcaagtacg gctacgcaga tcaacgctcg ttcttagctg cacaaatgac aaaggtggtc
     1801 tatgtctggg acaaagttac tagacgagtg gagttataca actgcaacga ctggtgctat
     1861 cctctttggg tctgggatga tccttatgca cttgaccagt tctttactgt tgtaccaatg
     1921 gagttccata ctgatcccat tacgatgtac gccaaaggtg aagttacata ttatctcgac
     1981 caacaagatg acatcaacat cataaacaac gagtgggcca aagtacgcaa gttcgccgca
     2041 ggtaaggtcg tcttcgacaa gaactcactc aaagatagct ccgtgttgga gagcctcatc
     2101 aatggtacaa cagacacgaa cgtgattggt gtcgatctac ctgaaggcaa gaagctatcg
     2161 gacatcttag gtcccttact tccaccatcc gcagacgcga tgaagttctt cgacaagaag
     2221 ccgacgatgg aggcgataga tcgtctgtca ggtgtagcat ctgtgcagcg tggtgtagag
     2281 tacaaaacca acaccaccaa tcgcgcaatc gagagctacg agagccaagt acaaa
//
LOCUS       DATCGC010001576         1064 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_122645, whole genome shotgun sequence.
ACCESSION   DATCGC010001576 DATCGC010000000
VERSION     DATCGC010001576.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1064)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1064)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1064
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122645"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(89..823)
                     /locus_tag="VIJ87_15045"
     CDS             complement(89..823)
                     /locus_tag="VIJ87_15045"
                     /inference="COORDINATES: protein motif:HMM:NF016908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HEY5445753.1"
                     /translation="MAKTLVKRPLNALGLDIVPFCVKSTDTKQFKPSEANKFIWLSRL
                     NINTIVDVGAHEGEFATRALQILPKASIISFEPLEDAFRQLKFNTLTMPNLKAFNCAL
                     GDTNSKMEIHRNEFTASSSLLKMVDLHKEAFPFTVKETIETVEVKRLDDVLHGLYLED
                     DILIKMDVQGYEDRVIFGGENVISRAKLLVVEVSFQTLYERQPLFDEIYSMLRQRGFA
                     YIGNWDQLLSPADGSVLQADAMFVRQ"
BASE COUNT          271 a          268 c          227 g          298 t
ORIGIN      
        1 ctctccggct cccgtttgac gatgcgacgg agcgaaaata tattctgcct cggagagaag
       61 tctcacgttt gtccattgcg tgacacggtc attgccttac gaacatggca tcagcttgca
      121 acacactgcc atctgcagga cttaacagtt ggtcccagtt gccgatatac gcaaagcctc
      181 tttgcctgag catgctataa atctcatcga ataacggctg cctttcgtag agcgtttgaa
      241 aacttacttc cacaacgagc agtttggctc tggaaatgac attttcacca ccaaagatca
      301 ctctatcctc atatccttga acatccatct tgataagaat gtcatcttct aaatacaatc
      361 cgtgcagaac atcatcaagg cgcttgactt cgacagtctc aatcgtttcc ttcacggtga
      421 aaggaaatgc ttccttgtga agatcaacca ttttcaacaa cgatgagctt gctgtaaact
      481 catttcgatg tatttccatc ttggaatttg tgtcaccaag tgcgcaattg aaggccttaa
      541 gatttggcat agtaagggta ttgaacttca actgacggaa agcatcttcc aggggttcaa
      601 aggatattat tgaagctttc ggcaggatct ggagtgctct cgttgcaaat tcaccttcat
      661 gtgcgccgac atcgacaata gtgttgatat taaggcgcga cagccagata aacttatttg
      721 cctcagacgg cttaaattgt ttggtgtcag tcgatttgac gcaaaatgga acaatatcca
      781 atcccagagc gttgagcggt ctcttaacta gcgtcttggc catatttctg acagtcacca
      841 tgaaccatat cccccccctc cagaaacagc cttatgctga tttatccttg cccgggttgt
      901 gtgaagcaga gagcctctga ttccaggcgt gttcaacgtg ttccatgaag atctgcgcat
      961 tcggaaagct gcgccaactt tgaatctctg ggtttctccg aacgcacgcg ggctttcgcc
     1021 tcttccagta tttctatcag tcgccgacgg taatcatccg gagc
//
LOCUS       DATCGC010001577         1538 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_323832, whole genome shotgun sequence.
ACCESSION   DATCGC010001577 DATCGC010000000
VERSION     DATCGC010001577.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1538
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_323832"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(258..665)
                     /locus_tag="VIJ87_15050"
     CDS             complement(258..665)
                     /locus_tag="VIJ87_15050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445754.1"
                     /translation="MQSVLSINHQVAMAQQEPNGALNKTLERVLNRVFGCWQHDLGRP
                     FSNNGRTYRICTKCGMSRDFDTASWTMKGHYHVTATSKIVYPKSNALRRVHTDQKPSR
                     YTAMTPNQPQRVSSIGSMMQEQFGADCNAGLAA"
     gene            complement(723..1166)
                     /locus_tag="VIJ87_15055"
     CDS             complement(723..1166)
                     /locus_tag="VIJ87_15055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445755.1"
                     /translation="MKKSYTFSNLPMAAIVLLVASLPCLAQVTANESTSALAVADNGS
                     TLAMNKVFRAVPPPTVSTDDTAVTSKSVERAKSPLSLATFKVSEQFNVNSKFFAGTQL
                     TNEVVSPDSKEQFRLDDDTPTNSSKVAFVPSRGFRLPTYDFKLPN"
BASE COUNT          337 a          372 c          430 g          399 t
ORIGIN      
        1 aagatgtaac cagctttgaa gggttcagat tcggtaaata ctgttacatc ttgtctgatc
       61 caactccgtt aatgcccttc aacaggtctc ataatctgta ggcttggggg gttcgaattg
      121 ctgcgaggga ccaaaccaac tccgattgcc gcttgcccgc gtcggcgagt tctcttaagc
      181 caggcgagtc ttgtgttcgc gaggagcctt tgcgtgtcac cgagcggaac gaacagcgac
      241 aggccattga cgatacttca cgccgcaagg cctgcgttgc aatctgcgcc aaattgttcc
      301 tgcatcattg atccgatcga gctaacgcgc tgaggctggt taggcgtcat agctgtgtaa
      361 cgactcggct tttggtctgt atgcactctt cgcaaggcgt tactttttgg atacacgatt
      421 ttagacgtgg cagtcacgtg atagtgccct ttcatagtcc acgaggccgt atcgaaatcg
      481 cggctcatgc cgcacttggt acagattcga taggttcgcc cgttgtttga gaacggacga
      541 ccaaggtcgt gttgccaaca accgaacact cgattcagca cgcgctccag ggttttgttt
      601 aaagcaccat tcggttcctg ctgagccatc gccacttgat gatttattga aagcacgctt
      661 tgcatttcta tttctcctta gttcaactgt cgtatgaagg gttgattgac aagttcgtga
      721 cgttagttcg ggagcttgaa gtcgtatgtc ggaagcctga agccgcgtga tggaacaaag
      781 gccactttgc tgctgttggt tggagtgtca tcgtcgagtc ggaattgttc tttggaatcg
      841 ggactaacaa cctcgttcgt cagctgcgtg ccggcgaaaa acttgctgtt cacgttgaac
      901 tgttccgaca ccttgaaggt agccagcgac agcgggctct tcgcacgctc aacactctta
      961 gaggtgaccg cggtgtcgtc tgtcgaaact gtaggaggag gaaccgcgcg gaacactttg
     1021 ttcatcgcca aagtagagcc attgtcggca actgccaacg cgctcgttga ttcattagcg
     1081 gtcacctgtg cgagacaggg aaggctggca actagtagta cgattgcggc cattggcaga
     1141 ttcgagaatg tgtaactctt tttcatgacg tctcctcttt agattgctga attgctaacg
     1201 tgatgtgaga ttagcaatcg ttaggagagt tgaaaattgt acgttggtgc gaggaacctg
     1261 tacctgagta cagggtggcc atgacgtctg gcaggctcaa gatgggcgtt tgaaatggcc
     1321 acacggagta tgcgaaacgg ggcagtagcc cgaccgtgag ggagggctcg ggtatcgcta
     1381 agcgagccct ccttgacagt cgggctactg ccccgactcc tacaaattta gagacaactg
     1441 ttattgaagg gtccgtatgg tggccaccag ggtgctgatg ctgagaggtt tgctaaaaaa
     1501 gccggcggct cctgcttcca gcgcgcgttt ctttatcc
//
LOCUS       DATCGC010001578         1492 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_420736, whole genome shotgun sequence.
ACCESSION   DATCGC010001578 DATCGC010000000
VERSION     DATCGC010001578.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1492)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1492)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1492
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_420736"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(149..>1492)
                     /locus_tag="VIJ87_15060"
     CDS             complement(149..>1492)
                     /locus_tag="VIJ87_15060"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEY5445756.1"
                     /translation="KPIVEYLPWLKINSKFEPVSTHHILSHSAGLPGVPLLLDAMLSE
                     LWTAYAPGKQFLYSNTGYNILGFLIETLDKRPFAESMRVRLLRPLGMSDSVPVISNES
                     RPKMAIGYEPINEGRPYPLHGTLAEAQWLEMDMAAGSIASTPADMAKYIRMLVNHGAL
                     PKGRLVSEETFNLFIKPAIKSPFRGEDASYGYGLWVSDIAGHTRLRHTGGMVAFSSSI
                     DADVTSGVGAFASVNANLRGYRPVAVTKFAVELMNASLAGKALPPPPPAPPLPSEVKN
                     ASEYAGVFTSPDNKRLELKAEGDKLLLFHKQRRIVLERAGRDLFLVKDPDFAVYLLGF
                     TREKDKVTEAYYGSDWYPGTSYSGPRTFNSPKEWEGYIGHYFSDSAWYGDSRVVLRKG
                     QLFVDGVQPLVVRSDGKFGLGDPEAPDWIVFETIINGRAMRLNLSGVVFRRAFTP"
BASE COUNT          347 a          449 c          350 g          346 t
ORIGIN      
        1 tggcagtcgc aaatggatct cagcgggggt acgctcgggg ttaattctga tcagcgcccc
       61 aaccttcgct acccccttcc cagcttgttc agtctattag ggcgtcacaa ttctgctcgc
      121 atacgacaag acagacgcat atcggacatc agggcgtgaa cgctcttcta aaaacaactc
      181 ccgataaatt caatcgcatc gcccgtccat tgatgatcgt ctcaaacaca atccagtctg
      241 gcgcttccgg atcaccaagt ccaaactttc catcgcttct tacaactaac ggctgaactc
      301 catcgacgaa cagctgccct ttccgcaaca caactcttga gtcgccatac catgcgctgt
      361 cgctgaagta gtgcccaatg tacccttccc actctttcgg cgaattgaac gtgcgtggcc
      421 cgctgtagct cgtacccgga taccaatcac ttccatagta ggcttcggtc actttgtctt
      481 tctctcgtgt aaaccctaac aggtagactg cgaagtccgg atccttcacg agaaacagat
      541 ctcgtcccgc acgctccagg acaatccgcc tttgcttgtg aaacagaagc aacttgtcgc
      601 cttcagcttt tagttcaagc ctcttgttat ctggtgacgt gaaaacgccc gcatactcgc
      661 ttgcgttctt tacttccgat ggcaaaggcg gagctggagg aggcggcggc aatgcctttc
      721 cagccaacga tgcattcatc aactcaaccg caaacttcgt aaccgccacg gggcgataac
      781 cacgcaggtt cgcgttcaca gacgcgaacg cacctacgcc actagttacg tcagcatcga
      841 ttgatgagct gaacgcgacc atcccgcccg tgtggcgtaa tcgcgtgtga cctgcgatat
      901 cgctcaccca aagtccgtag ccgtacgacg catcctcacc acggaaggga gacttgatgg
      961 ctggtttaat gaacaggttg aacgtctctt ccgaaaccaa acggcccttt ggcaacgccc
     1021 cgtgattcac gagcatgcgg atgtacttgg ccatgtctgc gggggtcgaa gcaatgctgc
     1081 cggccgccat gtccatctcc agccactgtg cttccgcaag agttccatgt agcgggtagg
     1141 gtcgaccttc gtttatcggt tcgtaaccta tcgccatctt cgggcgagat tcgtttgaaa
     1201 taacgggaac actatcgctc atccctaatg gcctcagcag ccgcacgcgc atcgactcgg
     1261 caaacggtct cttgtctaga gtctcgatca ggaacccgag aatgttgtag cccgtgtttg
     1321 agtaaagaaa ctgcttaccg ggcgcataag ccgtccacag ttcacttaac attgcatcca
     1381 acaacaacgg cacacccgga aggccggcac tatgactcag gatgtgatgc gtactcaccg
     1441 gctcaaactt tgaattgatt ttcagccagg gcaggtattc aacgatcggt tt
//
LOCUS       DATCGC010001579         1311 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_154516, whole genome shotgun sequence.
ACCESSION   DATCGC010001579 DATCGC010000000
VERSION     DATCGC010001579.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1311)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1311)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1311
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154516"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            133..351
                     /locus_tag="VIJ87_15065"
     CDS             133..351
                     /locus_tag="VIJ87_15065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445757.1"
                     /translation="MSTAKGHGTISSAVDELKITSALVVLREDGTVLITVCAEMQLHA
                     EGTWKASNSSLISPRCWNIFDGFEDSFP"
     gene            519..1184
                     /gene="hxpB"
                     /locus_tag="VIJ87_15070"
     CDS             519..1184
                     /gene="hxpB"
                     /locus_tag="VIJ87_15070"
                     /EC_number="3.1.3.22"
                     /EC_number="3.1.3.50"
                     /EC_number="3.1.3.68"
                     /inference="COORDINATES: protein motif:HMM:NF008087.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexitol phosphatase HxpB"
                     /protein_id="HEY5445758.1"
                     /translation="MINAVIFDMDGVLINSEPLWREAEIAVFETIGLQLTDEMCSETT
                     GLRLDEAVKYWLSRHSVKDVSAAELEDRIIGEVIKRIQMKATLMMGVDHALSLFRTKG
                     LKIGLASSSAFRIIWTVLEKFNLREQFDFIYSAEEEEFGKPHPGIYLTVGRKLGVNPT
                     ECLAIEDSLMGVLAAKSARMKCIAVPESASQRDPRFAIADCVLGSLLEINNEVWSRIL
                     SLP"
BASE COUNT          332 a          296 c          335 g          348 t
ORIGIN      
        1 tcctgcgtta gaagattaaa gaagcaccta aggtaatcgt cgggggtggc tcaggactgt
       61 gttgcaggaa ttttcgcgga aggattcttt ccaaagtcta tcctgaggtc aagggaagcg
      121 acgtaattgc cggtgtcaac agcaaagggt cacggtacga tttcttcggc agtcgacgaa
      181 ctgaaaatta cgtcggcgct tgtcgtcctc agggaggatg gcacggtgct gattacagtt
      241 tgtgctgaaa tgcagttaca tgcggaagga acctggaagg ccagtaactc cagccttatt
      301 tcgccccgtt gctggaacat ctttgacggc tttgaggatt cttttccgta gaaagatctt
      361 catcaaagtc tgatcgcttt gggtcacacc gctccacggc taaatttcca tagttttcat
      421 gcatctggca taattcaact aaatgcagag ccagaaattg ccattttcta cttcccgctg
      481 acgactaatc taattaacca agaccaaact tgtaactgat gattaatgct gtgatctttg
      541 atatggacgg agttcttatc aactccgagc cgctctggcg ggaggctgaa atcgcggtat
      601 tcgaaacgat cggccttcaa ttaacggatg agatgtgttc cgagactaca ggtctgaggc
      661 tggatgaagc ggtcaaatac tggctctcac gacatagcgt caaagacgtc tcggccgctg
      721 aattggaaga ccggatcatt ggagaagtca tcaagcggat ccaaatgaaa gccacattga
      781 tgatgggagt cgatcacgcc ttgagcttgt tcaggaccaa aggattaaag attggcctgg
      841 catcctcttc cgcatttcga atcatctgga cggttcttga gaagttcaac ctccgagaac
      901 agtttgattt tatttattca gccgaggaag aggagtttgg taaacctcat cccggaatct
      961 atctgaccgt tgggcgtaaa ctcggagtta atccaaccga gtgcctggca atagaagact
     1021 ctctaatggg agtactagct gcaaagtctg ccaggatgaa gtgcatcgca gttccggagt
     1081 cggcatcgca acgcgatccc cgttttgcca tcgcagattg cgtcttaggt tcgctgctcg
     1141 agatcaataa cgaagtgtgg tcacgaattc tgtctcttcc ttaacagcat tgcggattct
     1201 ctatcaaggt agatagttgt tcgatcgtgt gtttgcagta tggaagctgg atgcatggga
     1261 ctgacctcta ggtctaaaca gtctctaacc gcttcagctt tgcgacgatc t
//
LOCUS       DATCGC010001580         1287 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_420757, whole genome shotgun sequence.
ACCESSION   DATCGC010001580 DATCGC010000000
VERSION     DATCGC010001580.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1287)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1287)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1287
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_420757"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..680)
                     /locus_tag="VIJ87_15075"
     CDS             complement(<1..680)
                     /locus_tag="VIJ87_15075"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5445759.1"
                     /translation="MAIVNRLQKVVLTILLLLNGVVLFAGGAVAQNTQTEIDRAFDQA
                     TQMHQAGDLEGAIRGYTSILAKYPDRIDVRSNLGAAYSGLGRYEEAIEQYKRALAVDS
                     RNDTIRFNLSLAYYKAAWFSEASVELTRFLAANPKSPQSLNATVILADCQVRIGDYKK
                     VIELLSPIADTDSANRTVAYLLGSALIGDNQIAKGQEIIDRVFRDDDSAEARLLMGSM
                     LLLADEAQ"
     gene            1005..>1287
                     /locus_tag="VIJ87_15080"
     CDS             1005..>1287
                     /locus_tag="VIJ87_15080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445760.1"
                     /translation="MKPFVSLVLMLVMAIAPSIVVAQTPTSQDQDEVVRFRTNEVKLD
                     VVVKDKKGRPIKDLKASDFEVLEDGVAQKVESFRFVSREITEKPAGERLE"
BASE COUNT          344 a          321 c          300 g          322 t
ORIGIN      
        1 ttctgtgctt cgtccgccag caataacatc gaacccataa gcaatcgagc ttcggctgag
       61 tcgtcatcgc gaaacacccg atcgataatt tcctgaccct tggctatctg gttatcaccg
      121 ataagtgcac tacccaacag gtaagcaact gttcgattcg cggaatcagt gtcagcgatc
      181 ggcgagagca attcgattac cttcttatag tcgccgatgc gaacctggca gtcagccaga
      241 atcactgtgg cgttgagtga ctgcggactc ttcgggttag ccgcgagaaa acgagtcaat
      301 tcaactgatg cttccgaaaa ccaggcagcc ttgtagtaag ccagcgaaag attaaagcgg
      361 atagtgtcgt ttcttgagtc tacagcgaga gctcgtttgt attgttcaat cgcttcttcg
      421 tagcgaccaa gacccgaata cgcagcaccc aaatttgacc gtacatctat acgatcgggg
      481 tacttcgcca aaatcgacgt atagcctcga atcgcgcctt ccagatcacc agcttgatgc
      541 atctgggtcg cttgatcgaa cgcccgatcg atctcagttt gggtgttctg tgcgaccgcg
      601 ccccccgcga acagcactac cccgtttaga agcaaaagta ttgtcaagac aaccttttgc
      661 aagcgattca caattgccat ttagttaatc caggcgagtc taaaatctga acagagtata
      721 caccagccac tttctcagtc actaagctga aggcactttc acaaacctat ttagacaatt
      781 cgaagtgcgg agatttgatg cagtaattct cgcgacggaa gtctttttgg tttttgctac
      841 ccgtgggaag gatcaagctg gagttcagtg ataatcgaca ctatactcat tccaatcttg
      901 gttcctacaa acccggccac aacaaatatg cacctacagg gcattcgagg cgcttttgtt
      961 caaggtcggg ttgtggaaat cacatcaaaa gcgaggcagt tcaaatgaaa ccttttgtaa
     1021 gtctggtgct aatgcttgta atggcaatcg ctccttctat cgttgtggca cagactccaa
     1081 cttctcagga ccaggacgag gtcgttcgtt ttcgaaccaa tgaagttaag ttggacgtcg
     1141 tcgtgaaaga taagaaagga cgtccaataa aagacctcaa agccagtgac tttgaagtcc
     1201 tggaagacgg cgttgcccaa aaggtcgaat cgtttcgctt tgtctctcgt gaaatcacgg
     1261 agaagcctgc tggcgaacga cttgaaa
//
LOCUS       DATCGC010001581         1092 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_323912, whole genome shotgun sequence.
ACCESSION   DATCGC010001581 DATCGC010000000
VERSION     DATCGC010001581.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1092
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_323912"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..199)
                     /locus_tag="VIJ87_15085"
     CDS             complement(<1..199)
                     /locus_tag="VIJ87_15085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445761.1"
                     /translation="MDSRYYPNVEADLPRLNAELRNLFDSDYEVQAFQVSTTSIIQAR
                     KSNTLRDLTGLSSALTIKVTPE"
     gene            320..>1092
                     /locus_tag="VIJ87_15090"
     CDS             320..>1092
                     /locus_tag="VIJ87_15090"
                     /inference="COORDINATES: protein motif:HMM:NF014301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PA domain-containing protein"
                     /protein_id="HEY5445762.1"
                     /translation="MPTKLIHISATILLVVLLLLPTARFVFSQGSNAAPLDGFSANTS
                     ATQRRWEELFRSVPAPTSAREHLRRLTLEPHIAGTKEDYATAVYVRDQMKSYGLNAEL
                     KEYNVWLPYPKTTPIVELITQRRQRLSVTEAIVPGDPTSSNPKITPLFNGYSASGDVT
                     GPLVYANYGLPGDYEELKKVGVDVKGKIVIVRYGNSFRGVKAKVAEDNGAVGCIIYSD
                     PADDGYMQGDVYPKGPWRPVASGQRGSVQYLFDYPGDPLT"
BASE COUNT          232 a          271 c          293 g          296 t
ORIGIN      
        1 cctctggtgt gactttgatc gttaatgctg acgagagccc ggtaaggtcg cggagagtgt
       61 ttgacttgcg tgcctggata atgctggtgg tcgacacttg aaaggcctgg acctcgtagt
      121 cgctgtcgaa taggttgcgc agttctgcgt tgagcctggg aagatcggct tctacgtttg
      181 ggtagtatct actgtccatt taggttcctt tagattattg gttgctcatt aatattctga
      241 gttcattgta cggcaagagc taactgatag ttcatcatct ctattgctaa aacatctttc
      301 aatctcttcg ggattctaca tgccaactaa actgattcac attagtgcca caattctgct
      361 tgtcgttctc ttattgctgc caactgctcg ctttgtgttt tcgcaaggat caaacgcggc
      421 gccactcgac ggtttttcgg ccaacacgag cgcgactcaa cgacgttggg aagagttgtt
      481 tcgctctgtg cctgctccga cctcggcgcg tgaacacttg cgtcggttga cgctcgaacc
      541 tcacattgcc ggcaccaagg aagactacgc gactgccgtt tacgttcgcg atcagatgaa
      601 aagttacggg ttgaatgctg agttgaagga atacaatgtt tggctgcctt atccgaaaac
      661 cactcccata gtcgaactca ttacacagcg tcggcagagg ctgtcagtca ccgaggcgat
      721 tgtccctggt gatccaacgt cttcgaatcc gaagatcacg ccgctgttca atggctatag
      781 tgccagcggc gatgtgactg gtccgctggt gtatgccaat tatggtttac ctggcgacta
      841 cgaagagctg aagaaagtcg gcgttgatgt caaaggcaag attgtgatcg tccgctacgg
      901 caattcgttt cgcggcgtga aggcaaaagt cgccgaggac aatggggcgg tcgggtgcat
      961 tatctactcc gatcccgctg acgatggtta catgcaaggc gacgtttatc ccaaaggtcc
     1021 gtggcggccg gtcgcctccg ggcagcgtgg ttccgttcag tatctattcg attatcccgg
     1081 tgatccactc ac
//
LOCUS       DATCGC010001582         1451 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_420790, whole genome shotgun sequence.
ACCESSION   DATCGC010001582 DATCGC010000000
VERSION     DATCGC010001582.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1451)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1451)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1451
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_420790"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            205..1371
                     /locus_tag="VIJ87_15095"
     CDS             205..1371
                     /locus_tag="VIJ87_15095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007292390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
                     /protein_id="HEY5445763.1"
                     /translation="MNSGKMIFSQLMDFLPSQEFRRCVDRYKGNYKLQRFSCWDQFLC
                     MAFAQLTYRESLRDIEACLRSAGTKLYHMGIRNRVARNTLANANQVRDWRIYADFAHA
                     LIATARELYIGDSFGLDLQQTVYAMDSTMIDLCLSLFPWAKYRKRDGAVKLHTLLDLR
                     GNIPSVVIVTHGKVHDVNFLHQLIFEPGAFYVMDRGYLDFERLHTIGLASAFFVIRAK
                     SHIVIKRLYSRPVDKSTGVRSDQIITFSGFYAHKDYPDKLRRIHFYDNETNKRLIFLT
                     NNFTLSAFTIAQLYRCRWQVELFFRWIKQHLRIKAFYGTSENALKTQIWIAISIYVLV
                     AIIKKRLNLHGSLYRILQILSVNVFEKTPILEALSDADDQNASEESCNQFTLFE"
BASE COUNT          330 a          404 c          336 g          381 t
ORIGIN      
        1 ggcttggcga ttcccctcct tcgcgaagga ggggtggacg cgacctagag aaaatgctgc
       61 gaagcacgag tgtcccaacg ttttcatgcc gacgtctgta gctcattgaa atcgacatgg
      121 ttatctcaaa gaaaccgaaa atcgatttga aatgttcccg gttacgcctg catcttgacg
      181 cgactttgcg tcaggaggcc gtacgtgaac tcgggcaaga tgattttttc tcagttgatg
      241 gactttcttc cttctcagga attccgtcgt tgcgtcgacc gctacaaagg caattacaaa
      301 ctccaacgct tttcctgctg ggatcagttc ctgtgtatgg cctttgcgca acttacttac
      361 cgcgaaagtc tgcgcgacat cgaagcgtgt ttgcgctccg ctggcaccaa gctctaccac
      421 atgggcattc gcaatcgtgt cgcgcggaac acgttggcga atgcgaacca agttcgcgat
      481 tggcgtattt atgccgattt tgctcatgcc ttgattgcga ccgcacgcga actctacatt
      541 ggcgacagct ttggcctcga tcttcaacag acggtctatg ccatggactc cacgatgatc
      601 gatctgtgtt tgtcgctatt tccctgggcc aagtaccgca agcgcgatgg agcagtcaaa
      661 ctgcataccc tgctggatct ccgcggcaat attccgtcgg tggtcatcgt cactcacggc
      721 aaagttcacg acgtcaattt cctgcatcaa ctgattttcg aacccggcgc gttttacgtt
      781 atggaccgcg gctacctcga tttcgagcgg cttcacacca tcggtctcgc ttccgcattc
      841 tttgtgattc gtgccaagag tcatattgtc atcaaacggc tttactcccg gccagtcgac
      901 aaatccacgg gtgtgcgcag cgaccagatc atcaccttca gcggttttta cgctcacaag
      961 gattatccag acaagcttcg gcgcattcac ttttacgaca acgaaaccaa caagcggctg
     1021 attttcttaa cgaacaattt caccttgtca gctttcacca tcgctcaact ctatcgttgc
     1081 cgatggcaag tcgaactctt cttcaggtgg atcaaacagc atctacgcat caaggctttt
     1141 tacggcactt ccgaaaacgc tctgaagact cagatctgga tcgcgatttc catatacgtc
     1201 cttgtggcga tcataaaaaa acgcctcaac ctccacggca gtctttacag aattctccag
     1261 atcctcagcg tcaacgtctt cgagaaaacg cccattctag aggctctttc tgatgctgac
     1321 gatcaaaacg catctgaaga gtcttgtaac cagttcactt tatttgagta acgttgggac
     1381 actcgtggct gcgaagcatc ctttatggag cggacggggt ggttgtttca agccaccgct
     1441 tgtccgcccg a
//
LOCUS       DATCGC010001583         1646 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_488774, whole genome shotgun sequence.
ACCESSION   DATCGC010001583 DATCGC010000000
VERSION     DATCGC010001583.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1646)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1646)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1646
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_488774"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            106..>1646
                     /locus_tag="VIJ87_15100"
     CDS             106..>1646
                     /locus_tag="VIJ87_15100"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY5445764.1"
                     /translation="MKETPYTLRVDPTNNMRSVGPTKSRPESTSEGVTDQEKHEALQW
                     RSVFENSAIGVALADLNGRLLATNTTYQKMLGYTASEFQELSFLEITHEDSREANWAL
                     VMELKEGKRDQFQIEKQCRHKDGRFIWVRNNVSLVSSAESAQPFLLALSEDITERKEA
                     EQALQLSEERARLILTSASEGIFGCDSHGTCLFCNPAAVKLLGYDDSRELLGKNMHAL
                     EHHTRKDGSPFPIEECPIFIGFNENRGVHIDDDVFWKKDGSSFPVEYWSHPLVREGNT
                     VGAVVTFFDISERRKAEEILRTSEQRKRTLLEINNAIINNLTREALFASAYEAIRSVV
                     PFDRAAFLLYQPESNTLRLLSMNGADESEFFRIGKEYDLEETRVSAWVLQHQEVVMRG
                     DLKREKKSLGEKRLVAEGIQSYCAVPLVAMGTSIGTFTVWSETKNRYTQEDAELLREV
                     ANQVALAVANMKSYEEIAALKGRLEKENVYLQEEIRTVHNFEEIVGSSPALLALLRQV
                     NQVAPT"
BASE COUNT          449 a          391 c          424 g          382 t
ORIGIN      
        1 ttgtctcaat ttctggttat ggtgacgaac cgagatttaa aggcgcgagc aggctgcgtc
       61 tggcccaccg agaccctgaa ttggtctctt gacttcccac tctacgtgaa agaaactcca
      121 tacacgctta gagtcgatcc cacgaataat atgcggagcg ttggcccaac caagtcaaga
      181 ccggaatcta cttccgaagg tgtcaccgat caagaaaaac atgaggcttt gcagtggcgg
      241 tctgtctttg agaattccgc tattggagtg gcactggccg atctaaacgg ccgccttctg
      301 gccacgaata ccacttacca aaaaatgctc ggttataccg cgagtgagtt ccaggagctt
      361 tcatttctcg agattaccca tgaggattct cgagaagcaa actgggcttt ggtgatggaa
      421 ctgaaagaag gcaaacgaga tcagtttcaa attgaaaaac agtgccgtca caaagacggt
      481 cgttttatct gggtaaggaa taacgtatcc ctcgtatcga gtgcagaaag cgctcagccc
      541 tttctattgg cattgtcaga agacatcact gagcggaaag aagccgaaca agcgttacag
      601 ctaagcgaag agcgagcacg tctgattctc acttcagcct ctgaaggaat tttcggatgt
      661 gactcccatg gcacatgcct gttttgcaat cccgcagccg tcaaattgct cggctacgac
      721 gattcgcggg aattgctcgg aaagaatatg cacgcgctcg aacaccacac tcgaaaggac
      781 ggtagtccat ttccgattga agagtgtcca attttcatag gcttcaatga aaaccgaggc
      841 gtccatattg atgatgatgt tttttggaaa aaagatggca gcagttttcc ggtggagtat
      901 tggtctcacc cacttgttcg tgaaggtaat accgtcggcg ctgttgtgac ttttttcgat
      961 atcagtgagc ggcgaaaagc cgaagagata ctgcgaacca gcgagcaacg gaaacgcact
     1021 ctgctcgaga ttaacaacgc gatcatcaat aacctcacac gggaagcact cttcgcctct
     1081 gcctatgaag caattcgaag cgtcgttcca ttcgaccgcg ctgcttttct tctgtaccag
     1141 ccagaatcga acacgctgag acttttgtcg atgaacggcg ccgatgaatc tgagttcttc
     1201 cgtataggga aagaatatga tctggaagaa acccgcgttt ctgcgtgggt tctgcagcat
     1261 caggaagttg tcatgcgagg cgatctcaaa cgtgaaaaga agtcgcttgg tgagaaacgt
     1321 ctcgtcgctg aaggaatcca gtcgtattgc gctgtaccac tagtggcgat ggggacgagt
     1381 atcggaactt tcactgtgtg gagtgaaacg aagaaccgat acacacaaga agatgccgag
     1441 ttgctgcgag aagtggccaa ccaggtagca ttagctgtcg cgaacatgaa atcgtatgaa
     1501 gagatagccg ccttgaaagg aagacttgag aaggagaacg tgtacctcca ggaggagatc
     1561 cggacagtac acaattttga agaaattgtc ggtagcagcc cagcacttct tgcactcctg
     1621 cgtcaggtca accaggtcgc tcccac
//
LOCUS       DATCGC010001584         1165 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_356837, whole genome shotgun sequence.
ACCESSION   DATCGC010001584 DATCGC010000000
VERSION     DATCGC010001584.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1165)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1165)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1165
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_356837"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(488..>1165)
                     /locus_tag="VIJ87_15105"
     CDS             complement(488..>1165)
                     /locus_tag="VIJ87_15105"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEY5445765.1"
                     /translation="SRILARDYGFAVTGVTLSPQQVKRAQELTSPEVNAHFQVDDALA
                     LSFPDGRFDVVWSVEAGPHMPDKAQFARELMRVLKPGGILVVADWNQRDDRQVPLNFW
                     EKPVMRQLLDQWSHPAFASIEEFSELLEATGLVAGEVTTADWTPETLPSWLDSIWQGM
                     IRPDGIVRFGVIGFIKSLREVPTFLLMHLAFGAGLCRFGMFRAVHANVQTSEMLSTQT
                     DDRLVRS"
BASE COUNT          282 a          329 c          281 g          273 t
ORIGIN      
        1 gcgtcaatcc gaacgtttcc cgaccaagag aggctgtgcc aaatcctgcg cgatgccggg
       61 tttcgtcagg tgtcgtacaa gaacctcagc ggcggcattg tcgccattca tgtagcgacg
      121 aaataggaag gttacgggtt aggctcaggt tgcgagttgg agctatatga aagtatcctt
      181 aacctaagcc tcaatctagc tctattgatt ctatcctccg cattttcctc ccctgcaaga
      241 aggtctatcc catcgggatc acctatttgc ggactttatc cacctaatca ctgggggagg
      301 tcaaaagtct gggaagtcca gcctgccccc ttttcttccg cttccggtgt tgatctgctg
      361 gatgagattt tctatttcgt gggaaagtct ggttggtttg ttagacctag caccaaccct
      421 gcaacgccac agccgaccat aacgagatca tagtcggcat tctggggagt tagaccatca
      481 gtggcattca tgatcgtaca agcctgtcat ccgtctgcgt agacaacatc tcactcgtct
      541 ggacattggc atgcacggcc cgaaacatgc caaagcgaca cagtcctgcc ccaaatgcca
      601 gatgcatcaa caggaacgtg ggcacttccc gcaatgattt aatgaacccg atcacgccaa
      661 accgaacaat cccgtctgga cggatcattc cctgccagat ggaatcaagc catgagggta
      721 aggtttcggg agtccagtct gctgtggtca cttcacccgc caccagtcca gttgcctcca
      781 gtaattctga aaactcctca atactggcaa atgctggatg agaccactga tccagcagtt
      841 gccgcatcac tggcttttcc caaaaattga gtggaacctg gcgatcgtcc cgctgattcc
      901 aatcggcaac aaccagaatt ccacccggtt tcagaacgcg catgagctct cgagcaaatt
      961 gtgccttatc cggcatatgc ggtcctgcct cgaccgacca gaccacatca aatctaccat
     1021 cggggaacga aagtgccagt gcatcatcca cctgaaaatg ggcattcacc tctggggagg
     1081 tcagttcttg agcacgtttg acttgttgag ggctgagggt gactcctgtg accgcaaagc
     1141 cataatcccg cgcgagaatg cgact
//
LOCUS       DATCGC010001585         1172 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_56600, whole genome shotgun sequence.
ACCESSION   DATCGC010001585 DATCGC010000000
VERSION     DATCGC010001585.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1172)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1172
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56600"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..708
                     /locus_tag="VIJ87_15110"
     CDS             <1..708
                     /locus_tag="VIJ87_15110"
                     /inference="COORDINATES: protein motif:HMM:NF012688.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase"
                     /protein_id="HEY5445766.1"
                     /translation="DGAYLDACESGDLHTEVAKGIMPALPWTGDKYKDREIAERPHYR
                     QHSLRYMAKRLGHGSNYMGQPATMAFHSQMPVKVIKDFQTAYFTKFIAIQRWHQWVED
                     ELKMKGQLTTMLGMRRWFFGRRNDQGTLREAVAFEPQSVSVEILNRIMLNVWRANKVQ
                     LLLQVHDSLLFQYPEKDEAIVIPQMMKLFEYPVRLRGDRTLMIPAEVKTGYNWAPKTN
                     ENPQGLAKWKMAVGDRG"
     gene            792..>1172
                     /locus_tag="VIJ87_15115"
     CDS             792..>1172
                     /locus_tag="VIJ87_15115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445767.1"
                     /translation="MERKIWVVSRGTPLFPNLYVMLIGPPGVGKSIILARINQLWGFL
                     QEHHKGSSSLTRASFIDELDGAKRKQLFGPGPYEDYNSLTAAISEMGVLLPAYEHAFM
                     STLTDIYDGTPYSEKRRTKELSITI"
BASE COUNT          329 a          281 c          300 g          262 t
ORIGIN      
        1 gatggagcat atctcgatgc ttgtgagtca ggagatctcc ataccgaagt tgctaaagga
       61 attatgccag cactaccttg gacaggagat aagtataagg accgcgagat tgccgaaaga
      121 ccacactatc gtcagcactc cctccggtac atggctaagc gacttggcca cggcagcaac
      181 tacatgggac agcccgcgac aatggctttt cactcccaga tgccagtcaa agttatcaag
      241 gacttccaga cggcgtactt cacgaagttc attgcgatcc agaggtggca ccagtgggtc
      301 gaagacgaac tgaagatgaa aggccagttg acgacgatgc ttgggatgcg gcgctggttc
      361 ttcgggaggc ggaatgacca aggtacgttg cgcgaagctg ttgcattcga accacaaagc
      421 gtctccgtcg aaatcctgaa ccggattatg ctgaacgtat ggcgcgctaa caaagtacag
      481 ttgctgttgc aagtccatga ttcactctta tttcagtatc ctgaaaaaga tgaagcaatc
      541 gttataccac agatgatgaa gctctttgag taccctgtga ggctccgtgg ggatcgcact
      601 ttgatgatcc ctgctgaggt aaagactgga tataattggg ctccgaaaac aaatgaaaac
      661 cctcaaggac tcgcaaagtg gaaaatggcc gtgggagatc gtggatagag ttatttgttg
      721 aacagaccgc tgaaacagcc tcaccagaca tttttaggaa gtgggctgga atagcagcga
      781 tcgcaggagc gatggaaaga aagatatggg tagtctctag gggaacacct ttattcccaa
      841 acctttacgt catgctgatc gggccaccag gagtgggcaa gtcaatcata cttgctcgca
      901 ttaaccagct gtggggtttt ctccaagagc atcacaaggg ctcgtcttcg ttaactcgag
      961 cctcatttat tgatgagctt gatggagcaa agcgtaaaca actgtttgga cctggaccct
     1021 atgaagacta caactcactc acagcagcaa tcagcgagat gggcgttctc ctcccagctt
     1081 acgagcacgc ctttatgtcc actctcaccg acatctatga cggaactcca tatagcgaga
     1141 aacgacgcac aaaggagctg tcaatcacaa tc
//
LOCUS       DATCGC010001586         1538 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_90143, whole genome shotgun sequence.
ACCESSION   DATCGC010001586 DATCGC010000000
VERSION     DATCGC010001586.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1538
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90143"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..564
                     /locus_tag="VIJ87_15120"
     CDS             <1..564
                     /locus_tag="VIJ87_15120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445768.1"
                     /translation="NFDVRHRLSVSYSYLLPFGEGRDYLSDDGWVTKILTGWETFGIV
                     TLQTGRPFTVALLSEIDNSGTGRSVLGFGFNDRPNVAGNPELSDPSPSRWFNTAAFTF
                     SPPGTFGNAGRNILDGPGYQNVNASLVKNTHLTEEVNLQFRAEFFNLFNHPNFNLPDS
                     FLGSPTFGVISSAKDPRHIQFGLKLLF"
     gene            complement(671..>1538)
                     /locus_tag="VIJ87_15125"
     CDS             complement(671..>1538)
                     /locus_tag="VIJ87_15125"
                     /inference="COORDINATES: protein motif:HMM:NF016693.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tryptophan 7-halogenase"
                     /protein_id="HEY5445769.1"
                     /translation="DATGQSAMLSNKFGWRVRDPKLKKAVLYSYFKDAHREPDLNGGA
                     TLVLRTPLGSNGWFWYIPLENDITSVGVVADPEYLVKGRGQDLAKIFQEEIDKVESVR
                     RRVEGGTRVDKIYSILDYSYRSTHNAGDGFILIGDAYGFLDPIYSSGVLLALKMAELA
                     ADRIHDAFANNDFSAARLGQSQEKLDKGIESMRKLVYAFYNEGFSFSQFLRKYPEQRV
                     NIITLLMGNVFKDGVDEIYEPMADFAVIPPPLYEQLNGEAVHLPTTPSPEVMSAKYQT
                     FDDRAVMQESGD"
BASE COUNT          369 a          381 c          390 g          398 t
ORIGIN      
        1 aacttcgacg tgcggcaccg tttgtcggtc agctactcct acttacttcc atttggcgaa
       61 ggccgagatt atttgtctga cgatggttgg gtaacaaaaa tcctaacagg atgggaaacg
      121 tttgggatcg tgacgctgca aacaggtcgt ccgtttacag tcgcgctgct ttcggagatt
      181 gataacagcg gaaccggacg ttccgtactc ggctttgggt ttaacgatcg gcccaatgtt
      241 gccggcaatc ctgaattgag tgacccgagt ccaagccgct ggtttaatac ggctgcgttt
      301 actttttcac cgccggggac ttttggaaat gcaggaagga atattctgga cggaccgggt
      361 tatcaaaacg tcaacgcgtc gctggttaag aacacgcatt tgacggaaga agttaatctg
      421 cagtttcggg cggagttctt caacctgttc aatcatccaa acttcaactt accggatagc
      481 ttccttggtt cgccgacgtt tggcgtcatc agttcagcca aagatccaag gcacattcaa
      541 tttggattga aattgttgtt ctagctgggt gaggtcagta ccaaaacgcg gtagcgtgtg
      601 gcttagcaag gaaacttgaa ttcgttgcgc tggagccaca cgctaccgcg ttgtggtact
      661 gacctaaagc ttagtcgccg gattcttgca tcacggcgcg atcatcgaag gtctgatact
      721 tcgctgacat gacttcaggt gatggtgttg ttggtaggtg tacagcttca ccgttgagtt
      781 gttcgtaaag cggtggtggg ataacagcaa agtccgccat tggctcatag atctcatcaa
      841 cgccatcctt aaagacgtta cccatcaaca aagtgatgat gtttactctc tgctctggat
      901 acttcctgag aaactgcgag aagctgaagc cctcgttata aaacgcgtag acgagtttcc
      961 tcatcgactc aataccctta tcgagtttct cctgtgattg tccgagccgg gccgctgaga
     1021 agtcgttatt ggcgaaggca tcgtgaatac ggtcagcagc caattccgcc atctttaaag
     1081 ctagcaagac accagatgaa taaatcggat cgagaaagcc gtaagcgtcg ccgatgagga
     1141 tgaagccgtc gcccgcgtta tgtgtcgacc gatatgagta gtcgagtatc gaatagatct
     1201 tatcgacgcg cgttccaccc tcaactcgtc gtctaactga ttccaccttg tcgatctctt
     1261 cctgaaagat cttggccaga tcctgaccac gaccctttac gagatactca ggatccgcaa
     1321 ctacgccgac actggtgatg tcgttttcga gtgggatgta ccagaaccaa ccgttactgc
     1381 cgagcggtgt ccggagcaca agtgtcgccc cgccattcaa atccggttca cgatgcgcat
     1441 ccttgaagta cgaatagaga actgctttct ttagttttgg atcacgaaca cgccaaccaa
     1501 acttgtttga gagcatcgct gattggcccg ttgcgtca
//
LOCUS       DATCGC010001587         1114 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_356903, whole genome shotgun sequence.
ACCESSION   DATCGC010001587 DATCGC010000000
VERSION     DATCGC010001587.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1114)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1114)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1114
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_356903"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            17..>1114
                     /locus_tag="VIJ87_15130"
     CDS             17..>1114
                     /locus_tag="VIJ87_15130"
                     /inference="COORDINATES: protein motif:HMM:NF017263.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alginate lyase family protein"
                     /protein_id="HEY5445770.1"
                     /translation="MALIQALLDSRATAPGATAPGYCTGLESVSQRGGAYGWLVEADH
                     GCSSNDVRCVLPRCGTDSNLILQMILMRHLFLLVLLPATCLSVVACTLTTSSGAAPAS
                     LPRVFILNARKLESTKLRIRKGDKQVEPALAKLERDAKKALTAGPFSVTTKDATPPSG
                     DKHDYMSQAPYFWPDPKKPDGLPYIRRDGERNPEIEKINNHRVKDGMEAAVETLALAY
                     YFTGDETYAEKASQLLRVFFLDPATRMNPNLQFAQGIPGITTGRGIGLIETRGLTKVV
                     DAIGLLANSKAWTPADQRGLEDWFGKFLQWMLESKNGRDESAAKNNHGTYYDVQVVSF
                     ALFLGKTDLARTVLLTARTKRIALQVEPDGRQ"
BASE COUNT          263 a          287 c          308 g          256 t
ORIGIN      
        1 gtcagttggg agacgtatgg ctctgatcca agccctcctt gacagtcggg ctactgcacc
       61 gggggctact gcaccgggct actgcactgg actggagtca gtatcacaac gcggtggcgc
      121 gtatggttgg ttagtcgagg ctgatcatgg atgctccagc aacgacgtga gatgcgtgtt
      181 accgcgttgt ggtactgact ccaatctcat tctccagatg attcttatga gacatctttt
      241 cctgctggtc ttactgccgg ccacgtgttt gtctgtcgtg gcttgcacct taacaacttc
      301 aagcggcgct gctcctgcgt ctctcccgcg agtgttcata ctcaacgcca ggaaacttga
      361 atcgacaaaa cttagaatcc gtaagggcga caagcaagtc gaacctgcac tggcgaagtt
      421 ggaacgtgat gcgaagaaag cgctaactgc tggcccgttc tcagtcacta ccaaagacgc
      481 aacgccacca agtggcgaca agcacgacta catgagtcag gcgccgtact tttggccgga
      541 cccaaagaag cccgatggtt tgccttacat tcgtcgtgat ggtgaacgca atcccgagat
      601 cgagaaaata aacaatcatc gagtcaaaga cggaatggaa gcagcggttg agactctggc
      661 tctcgcctat tacttcaccg gcgatgagac ctatgcggag aaagcgtcgc agctgttgcg
      721 tgtcttcttt cttgatcccg cgacgcgaat gaatcccaat ttacagtttg ctcaaggcat
      781 tcctggtatc actacgggac gcggcattgg cctgatcgaa acgcgtggtc tcacgaaggt
      841 agtcgacgcg attggattac ttgctaattc gaaagcgtgg acaccggcgg atcaacgcgg
      901 gctcgaagat tggtttggca agtttttgca atggatgctc gaaagcaaga acggtcgcga
      961 cgagtcggct gcgaagaaca atcacggaac gtactacgac gtgcaggtag tttccttcgc
     1021 gttgtttctt ggcaagacgg atcttgcgcg gacagtcttg ttaaccgcac gcacaaaaag
     1081 aatcgcactg caggttgagc ccgatggtcg tcag
//
LOCUS       DATCGC010001588         1445 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_122881, whole genome shotgun sequence.
ACCESSION   DATCGC010001588 DATCGC010000000
VERSION     DATCGC010001588.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1445)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1445)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1445
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122881"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(29..238)
                     /locus_tag="VIJ87_15135"
     CDS             complement(29..238)
                     /locus_tag="VIJ87_15135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445771.1"
                     /translation="MSQQKPITEQILKFLQGVPNRDFEALVTRYPEFSWNELYLEVSR
                     LNRHGLVKITRGVGVFTIQETPASP"
     gene            complement(538..882)
                     /locus_tag="VIJ87_15140"
     CDS             complement(538..882)
                     /locus_tag="VIJ87_15140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445772.1"
                     /translation="MRKIVINKSYEQFCVSHKAFLRLRELGQREALQEVDLGAYWPAA
                     STPQEPKFNQCGKLIPRDDQMLSQVVEELGVAANGFCAELKVVAIPDDVRWEIRSVDG
                     QEQVSEVHRTWA"
     gene            complement(968..1210)
                     /locus_tag="VIJ87_15145"
     CDS             complement(968..1210)
                     /locus_tag="VIJ87_15145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445773.1"
                     /translation="MNQEQFGQFWEQLKTPLQAKWEKITDQDLLEIQGNLATFAAILQ
                     KRYGELHKEEVSTWAKRRYAHWSGNYVGYPDLKPAL"
BASE COUNT          303 a          416 c          369 g          357 t
ORIGIN      
        1 gcgcgggttc ccgacaacaa tcctgaactt acggcgaagc cggggtttct tgaatggtga
       61 acactccgac gcccctggta atttttacca gtccgtggcg gttcaagcgg gacacttcaa
      121 gatagagctc attccaggag aattccgggt aacgggtcac cagggcctcg aagtcacgat
      181 taggaacacc ttggagaaac ttgaggattt gctcggtaat gggtttctgc tgagacatca
      241 gcttcctcct cgcgacaata caccgagtcc tagatcaggc gacagcgtct agagcctttt
      301 catattcgct tccgcgatgc cgtctgcttg ggtgtctcct tcccgtcatg ctcggcatcg
      361 gtcgattcgc cttccgataa cagatcctcg acctgatctt catcacaggt aaggtcttcg
      421 gcgggacgtg ttggtctagg cgtgcttgca gttttctgaa cccgtccagt tagcgccatg
      481 gcgcatctcc ctcaacaatc gatcagaatc aaagccgtgc agcgcgttct tcgtagctca
      541 tgcccacgta cgatgcacct cactgacttg ctcttgccca tcaaccgagc gtatctccca
      601 acggacatcg tcggggatcg ctaccacttt caactcagca caaaatccat tcgcggccac
      661 accgagctcc tcgacaactt ggctcaacat ctggtcgtcc ctcgggatca attttccgca
      721 ctgattgaat ttcggttctt ggggcgttga ggccgcaggc cagtaggccc cgaggtcgac
      781 ctcttgcagc gcttcccgct gcccaagttc tcgtaaacgc aggaatgcct tatggctcac
      841 gcaaaattgt tcatagctct tgttaatgac aatctttcgc atgacgggat ccccctctgt
      901 tggctctgcc tatttgaacg tgcccaccaa atacctggta tggcgtaccc tctgcatgga
      961 tagtgggtta cagggccggc ttgagatctg gatacccaac atagtttccg ctccagtgag
     1021 cataacgtcg cttggcccac gtgctcactt cttccttgtg caattcccca taacgcttct
     1081 gtagaatggc ggcaaacgtt gcgaggttgc cttgaatctc gagaagatcc tgatccgtga
     1141 tcttctccca cttcgcttgc aaaggtgtct tgagttgctc ccagaattgt ccaaactgtt
     1201 cctgattcat gagtaacctc cctggctgtg gaatggcaga ccaaacctgt tcaccgcacc
     1261 gtgttggaaa cgcgtactct ggcgtaaaag cggcggagac caggagaatc acacgcgcag
     1321 ggaagatggg gaagcgcgca ggataggaca gtcggcgtgg ctcaatacgt cgtgagcagc
     1381 ctacacggct aggggacagg agtcaatggt cctctacgca tcgttcctct ttctgtgggg
     1441 gtctt
//
LOCUS       DATCGC010001589         1243 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_26182, whole genome shotgun sequence.
ACCESSION   DATCGC010001589 DATCGC010000000
VERSION     DATCGC010001589.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1243)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1243)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1243
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26182"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..205)
                     /locus_tag="VIJ87_15150"
     CDS             complement(<1..205)
                     /locus_tag="VIJ87_15150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0015109 - chromate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015703 - chromate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromate transporter"
                     /protein_id="HEY5445774.1"
                     /translation="MFEKTKQRGRRVGNRVRSGTKRLKRISQFPTLGGIFLSFLKIGV
                     VGFGGGLAVMAQIRTLVVNRRRWF"
     gene            complement(299..>1243)
                     /locus_tag="VIJ87_15155"
     CDS             complement(299..>1243)
                     /locus_tag="VIJ87_15155"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY5445775.1"
                     /translation="GRERTEGVYLEDLVRFGSRFFLNLGGRLDHWRNFAASSATRPIT
                     APSPTNVIRFPDRTETAFSPHGSIVYRLNDRVSLTGSMSRAFRAPTLNELYRSFRVGN
                     VLTLANENLRAERLTGGEAGLRATSENQRIAVRGTFFWNDITRPVANVTLITTPALIT
                     RQRQNLGRTRSRGIELQVDGTLNRMWNVSASYLFADATVVKFPANTSLEGLRLPQVPR
                     HQFTFQARYVNPSIVTVGLQARASSSQFDDDQNLFRLGSYFTLDAMVSRRLTHRLEVF
                     AAIENVFNQRYEVGKTPVTTLGPPILVRGGIRVQLGGH"
BASE COUNT          325 a          330 c          312 g          276 t
ORIGIN      
        1 taaaccaacg ccgcctatta acgaccagcg ttcgaatctg cgccataacg gctagcccac
       61 cgccaaaacc aacaacaccg atttttagaa aggaaagaaa aataccgccg agcgttggaa
      121 attgtgagat acgcttcagc cgtttggtgc cggaacgaac ccggttacca actcgccgcc
      181 cacgttgctt agttttctcg aacaaggttt taagtctccg ataagcttta gcttgtcgct
      241 cactcaagct cagagcgccc ggtgctgatc gctgcgacaa gctaaagctt atcggacatt
      301 agtgccctcc aagttgaact cgaatcccgc cacgaaccag gatcggcggc ccaagcgtag
      361 taacgggagt tttaccaact tcgtaacgtt gattaaaaac attttcaatc gcagcgaaga
      421 cttccagtcg atgcgtcaga cgcctcgaga ccatagcatc caatgtgaaa taagagccca
      481 ggcgaaacag attctgatcg tcgtcaaact gtgaacttga cgcgcgcgct tgcaagccaa
      541 ctgtcacaat cgacggattc acgtatcttg cttgaaacgt gaattggtga cgaggtactt
      601 gcggcagccg caatccctcg agactcgtgt ttgccggaaa cttcactacc gtggcatcag
      661 caaacaaata cgaagccgac acgttccaca tccgattcaa agtaccatca acctgtaact
      721 caatacctcg tgagcgagtg cgcccaaggt tttgtcgctg tcgagtgatc aaggctggtg
      781 tagttatcag tgttacgttg gcgactgggc gcgtgatgtc gttccaaaag aaagttccgc
      841 gaacagcaat cctttgattc tcactcgtgg cgcgtaaacc tgcttcgcct ccagtgagtc
      901 gttcggccct caggttttcg ttggcgagcg tcaaaacatt tccgacgcga aacgagcggt
      961 acagttcgtt gagagtaggt gcccgaaaag ctcgcgacat tgatcctgtt agagagacac
     1021 gatcattcag tcgataaaca atggaaccgt gtggactgaa ggctgtttcc gttcgatcgg
     1081 gaaaacgaat tacgttagtc gggctgggcg ccgtgatggg acgggttgcg gaagatgcgg
     1141 caaagtttcg ccaatggtcg aggcgtccgc cgaggtttag aaaaaagcgc gaaccaaacc
     1201 gaaccaaatc ttcaaggtag acaccttcag ttcgctcccg tcc
//
LOCUS       DATCGC010001590         1035 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_154748, whole genome shotgun sequence.
ACCESSION   DATCGC010001590 DATCGC010000000
VERSION     DATCGC010001590.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1035
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154748"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            424..978
                     /locus_tag="VIJ87_15160"
     CDS             424..978
                     /locus_tag="VIJ87_15160"
                     /inference="COORDINATES: protein motif:HMM:NF016836.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HEY5445776.1"
                     /translation="MKTIKSTLLTIGAALLLTMPVMAQSYRTNVVSNPQMAKKVRHEL
                     VTLPYYGVFDNLAYNINGGIVTLYGQVVRPTTRSSAESRVKRIPGVSRVVNNIQVLPL
                     SRFDDNIRAATYRSLARTGALYRYLQGGNPSVHIVVNNGHVTLEGVVANKSDKALANM
                     AARSVSGTFSVTNNLRVEGESNIG"
BASE COUNT          281 a          224 c          266 g          264 t
ORIGIN      
        1 gactttgtct cttccagctg agatttaaaa gtcgagatga tgtcgtcgct ttgaatgaga
       61 tcgatgtatc ggaaatagta ttcggcggct tcgttagttg tggggcgtgt catggttgaa
      121 atcgtaattc ttgtctgagt aaaagacaaa agctgaagta agaatctcag gtctcaaatc
      181 tcagatttca aatctcaaat ctcagatttc agaacataga tctaaagggg acgtcgcttt
      241 ctaagatctt agatctgaga tctaagcttg cccaagattt cccaatgatt ctgcaacaaa
      301 accctcatca aatcgaccag tcaaatgtaa ctgcttcgtg ctttttggtg tctatgttgg
      361 tgaaaggaaa gagcccgtat caatagccga atagggttat tgaaaggggg tatgaatacg
      421 aagatgaaaa cgattaagtc gactctatta acaatcggag cggcattgct cctgactatg
      481 ccggtgatgg cgcagtcgta ccggacgaac gtagtttcaa atccacagat ggcgaagaag
      541 gtccgacacg agctggtgac gctgccgtac tacggtgtgt tcgataatct cgcgtacaac
      601 atcaatggcg gtatcgtgac gctctatggt caagtagttc gtccgaccac gcggtcatct
      661 gctgaaagca gagttaagag aattcctggc gtgtcgcgtg ttgtgaacaa tatccaggtc
      721 ttaccgttgt cacgatttga cgacaacatc cgtgcggcaa cctatcgttc gcttgcgagg
      781 acaggtgcgc tctacagata tctgcaaggt ggaaatccat cagtccacat cgtagtgaac
      841 aatggacatg tcactctgga aggtgttgta gccaataagt ctgacaaggc gctggcaaat
      901 atggcggctc gaagtgtgtc aggtactttc agtgtaacca acaatctgag ggttgaaggc
      961 gaaagtaaca tcggctaact agcgacaagc gatgggtgcc tctgttcagg ccacagaggc
     1021 gcccccttcc ccgcg
//
LOCUS       DATCGC010001591         1542 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_421031, whole genome shotgun sequence.
ACCESSION   DATCGC010001591 DATCGC010000000
VERSION     DATCGC010001591.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1542
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_421031"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..376)
                     /locus_tag="VIJ87_15165"
     rRNA            complement(<1..376)
                     /locus_tag="VIJ87_15165"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            complement(562..637)
                     /locus_tag="VIJ87_15170"
     tRNA            complement(562..637)
                     /locus_tag="VIJ87_15170"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(602..604),aa:Ala,seq:tgc)
     gene            complement(647..723)
                     /locus_tag="VIJ87_15175"
     tRNA            complement(647..723)
                     /locus_tag="VIJ87_15175"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(687..689),aa:Ile,seq:gat)
     gene            complement(844..>1542)
                     /locus_tag="VIJ87_15180"
     rRNA            complement(844..>1542)
                     /locus_tag="VIJ87_15180"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          314 a          475 c          375 g          378 t
ORIGIN      
        1 tcacgtgccc cgccttactc acttttcatc gtacgtgccc tttcgcttac cgggctatca
       61 ccgtctaggg ccagcctttc cagactgttc aactagaaca cgcacaactt ttgggctact
      121 ccgcgttcgc tcgtcgctac tagcggaatc tcggttgatt tctgttcctc gaggtaatga
      181 gatatttcag ttccctcggt tcgcttccct tccctataaa ttcaggaagg gatactcctt
      241 gcggagtggg tttccccatt cggacatcgc ggaatcaatg cttgttgcca gctcctccgc
      301 gcttttcgca ggctgccacg tccttcttcg cctctgactg ccaaggcatc caccgtagac
      361 gcttattcgc ttgatcatat aacccgaagt tgccttcaag tccgatcaac tctcaatatt
      421 tcgcctaatt gcctcaacga cacatctaaa ctcggtgaga gttcagacgc ttgttacgtc
      481 ccaagttgtc aaagagccca aacaagacct caacgtcttg ccggtatcaa atcatttagt
      541 gtgcgcagtt atatccagaa ctggtggagc tgaccgggat cgaaccggtg accccctgct
      601 tgcaaagcag gtgctctccc agctgagcta cagccccgaa tgccgatggt gggtctggga
      661 ggactcgaac caccgacctc gcccttatca ggggcgcgct ctaaccacct gagctacaga
      721 cccaacaata cgcggaacgc gtggtggcct gcggtacagc ggccatgcgc cttgcggcgc
      781 gtcgcttatc ttagatgcag gttacttgtg tggacgccaa gagatggcga tcagtcgttc
      841 tcgaaaggag gtgatccagc cgcaccttcc gatacggcta ccttgttacg acttcacccc
      901 agtcattgac cactccgtgg caagcgtccc ccttgcggtt agactacctg cttctggagc
      961 aaccaactcc catggtgtga cgggcggtgt gtacaaggcc cgggaacgta ttcaccgcga
     1021 caatgctgat tcgcgattac tagcgattcc gacttcacgc agtcgagttg cagactgcga
     1081 tccggactga gagaggtttt ctgggattgg cttcacctcg cggcttcgca accctctgta
     1141 cctcccattg tagtacgtgt gtagccctgg ccgtaagggc catgatgact tgacgtcatc
     1201 cccaccttcc tccggtttgt caccggcagt ctccttagag ttcccaccat tacgtgctgg
     1261 caactaagga caagggttgc gctcgttgcg ggacttaacc caacatctca cgacacgagc
     1321 tgacgacagc catgcagcac ctgtctcacg gttcccgaag gcactctccg atctctcaga
     1381 gattccgtgg atgtcaaggc caggtaaggt tcttcgcgtt gcatcgaatt aaaccacata
     1441 ctccaccgct tgtgcgggcc cccgtcaatt cctttgagtt tcagtcttgc gaccgtactc
     1501 cccaggcggc gaacttaacg cgttagcttc gacactgaga gc
//
LOCUS       DATCGC010001592         1869 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_324368, whole genome shotgun sequence.
ACCESSION   DATCGC010001592 DATCGC010000000
VERSION     DATCGC010001592.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1869
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_324368"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1011
                     /locus_tag="VIJ87_15185"
     CDS             <1..1011
                     /locus_tag="VIJ87_15185"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HEY5445777.1"
                     /translation="RDEIERLRQQYIDTFTLSVDEPSSLGRFVGSKVVYGDGLYGHPI
                     LGTLESLKRISRADILRVHRLYYRPDNALLLIGGDISQADGFALAKRFFDDWVKPSKP
                     VPPLAGVSSPSLPKTRRIVVIDKPDAGQAAVLVVRRGIGRKDEDYYSGIVTNSVLSGY
                     SGRLNQEIRIKRGLSYGAYSALEARREIGPFVAAAQTKNDSGAEVADLLLGELQRLST
                     APPENAELTPRKAALIGEFSRDLETIDGLVTQISGLALYGLRLEEINQYIAKVQQVSE
                     ADVKQFSKSRLDAKSSDIIIVGDSKAFLPALQKKYGQVEVIPFKQLDLNTKSLRKRRI
                     NK"
     gene            1026..1655
                     /locus_tag="VIJ87_15190"
     CDS             1026..1655
                     /locus_tag="VIJ87_15190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445778.1"
                     /translation="MNLKCVRIWRCSGLAVLLLALGGFVSTSAQSPIDGIDARTNTTE
                     LAQQLGSPDPLLRQRSAEGLARLAAIDQRKLVEGYSLQEKNKEVKLALDWALYRMGRS
                     EALFRIVKELDSGRQMQAMGYLSELESPDLLYPYLKRTNTPPRVTSGLIKALARIGNA
                     ETLELIKPYRESLQPYVAEAAETACDEIEKRLGEDTTPSKSRPRTVQKP"
BASE COUNT          476 a          436 c          504 g          453 t
ORIGIN      
        1 cgagacgaga ttgaacgttt gagacagcaa tacatcgata cttttactct atccgttgac
       61 gagccatctt cgctgggtcg tttcgttggg tccaaggtcg tttacggcga cggactatac
      121 ggccatccca ttctgggaac gctcgaatcc ttgaagcgga tttctcgagc ggatattttg
      181 cgagttcatc ggctttatta ccggcccgac aatgcgctgc ttctgattgg tggtgatatt
      241 agtcaagccg atggttttgc tttagccaaa cgattttttg atgactgggt caaaccttcg
      301 aaacccgtcc ctccgcttgc tggcgtaagc agcccatctc tcccgaagac tcgtcggata
      361 gttgtcattg acaaacctga cgcgggacag gccgctgttc ttgtcgttcg gcgaggtatc
      421 ggtcgcaagg atgaggatta ctatagcggt atcgttacca attctgtctt gagtggttat
      481 tcaggtcgtc tcaaccagga gattagaata aagcggggct tgagttacgg agcgtacagc
      541 gcgttggagg cacgacggga gatcggacct tttgtagctg ctgcgcaaac caaaaatgac
      601 tcaggtgccg aagtcgcaga tctcttattg ggagagcttc aacgcctgtc cactgcgcct
      661 ccggaaaatg ccgagctcac gccgcgcaaa gcggcattga taggtgagtt ttcgcgagat
      721 cttgaaacca ttgatggact cgtcactcag atttccgggc tggcgcttta cggattgcgt
      781 ctcgaagaaa ttaatcagta cattgcgaaa gtacagcaag ttagtgaggc ggacgtgaaa
      841 cagttttcta aatcacgact agacgcaaag tcgagcgaca tcatcatagt tggggactcg
      901 aaggcatttc tgccggcact acaaaaaaag tatggacaag tcgaagtgat tccctttaaa
      961 cagttggatc ttaatacgaa gtcgttgcgc aaacgacgca taaacaaata gtctggagcg
     1021 tagttatgaa cctgaagtgc gtaaggattt ggcgttgttc tggacttgct gtcttgctcc
     1081 tggcacttgg cggctttgtg tcgacgagcg ctcagtctcc aatcgatgga atcgacgcga
     1141 ggacaaacac tactgaactg gcgcaacagc ttggcagtcc tgacccgttg ctgcgacaac
     1201 gcagcgcgga agggttagcg cgactggccg caatcgatca acgaaagctc gtcgaaggct
     1261 attcgctgca ggaaaagaac aaagaagtaa agcttgcttt ggattgggca ctctatcgga
     1321 tgggacggtc ggaagccttg tttcgaattg tgaaagaact cgattcagga cgacaaatgc
     1381 aagcaatggg ttacctctcc gaactagaaa gtcccgatct tctctatcct tacttgaaga
     1441 gaacgaatac tccgccacgt gtgacgtcag gattgataaa ggcgcttgct cgtatcggca
     1501 atgcagagac gttagaactc atcaaaccat atcgggaatc actgcaaccg tatgttgctg
     1561 aggctgccga aactgcatgt gatgaaatcg agaagcgact gggcgaagat acgacaccaa
     1621 gcaagagccg accacgaaca gtgcagaaac cgtagagcgg aaaaagatta tttgtcattg
     1681 gtcattttcc atttctcatt ttccatttag gacgcgtctg tggggcgaac aagggagtag
     1741 gacgccttag tgtgtcgaac aaactgggaa cggtggcaag cggaaaactg gacgtcttac
     1801 ttcattggcc ctgagtgcgc ccccgctgag gttcacctca ccatttaaga tgttcatgtg
     1861 gcgactcag
//
LOCUS       DATCGC010001593         1364 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_90333, whole genome shotgun sequence.
ACCESSION   DATCGC010001593 DATCGC010000000
VERSION     DATCGC010001593.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1364)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1364)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1364
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90333"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..222
                     /locus_tag="VIJ87_15195"
     CDS             <1..222
                     /locus_tag="VIJ87_15195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445779.1"
                     /translation="MKSVPHSGSVWLFAALPPPCGKASGFPEVSVFDLLRLRQRQSRK
                     VVAGNRKARGIPHGGRQSREEPHATAMWY"
     gene            complement(257..>1364)
                     /locus_tag="VIJ87_15200"
     CDS             complement(257..>1364)
                     /locus_tag="VIJ87_15200"
                     /inference="COORDINATES: protein motif:HMM:NF013300.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-L-fucosidase"
                     /protein_id="HEY5445780.1"
                     /translation="FATQFNPVKFNAKEWVSIAKAAGMKYIVITSKHHDGFALYNSKV
                     SNYDIVDATPYHRDPIKELAAEAKRQGLVFCFYYSILDWHYPAAYVEAPGKDPTAGNR
                     TTKLKPGGKEEYLKYMKEQLRELVTAYDPGVLWFDGEWQDWWSEEDGKELYKYVRSLK
                     PNIIINNRVGRGREGMKGLSKTDQTYAGDFGTPEQQIPPNGLPGVDWESCMTMNTTWG
                     FKFYDDKWKSPEVIIRNLIDIASKGGNYLLNVGPTAEGLIPAPSVERLTAVGKWMKVN
                     GESIYGTTASPLSTQPEFGRITGKPHRYYLHVFKWPSDNTLRVSLATSVTKAYLLADP
                     KTRIRVDNGEEYLVIRLPAKAIDPIATVVVLETK"
BASE COUNT          287 a          379 c          335 g          363 t
ORIGIN      
        1 atgaagtcag taccacatag cggtagcgtg tggctcttcg cggctttgcc gcccccctgt
       61 gggaaagcct ctggctttcc ggaagtatcg gtttttgatc ttttgaggct acgccagcgg
      121 cagagccgca aagttgtcgc aggtaatcgg aaagccagag gcattccgca cggggggcgg
      181 caaagccgcg aagagccaca cgctaccgcg atgtggtact gacttcatag tcgcgtgatc
      241 tacttggtcg tgtgatctac ttcgtctcca gcaccacgac tgtcgcaatg ggatctatcg
      301 cttttgcagg tagccgtatc actagatatt cctcgccgtt gtcgactctg atacgcgtct
      361 tcggatcggc aagcaaatac gccttggtta ctgacgttgc caacgaaacg cgaagcgtgt
      421 tgtccgacgg ccacttgaaa acatggagat agtaccgatg tggcttaccc gtaatcctgc
      481 caaattcagg ttgcgtggac aacggacttg ctgtcgtccc atagatcgat tccccattaa
      541 ccttcatcca ctttccaaca gcagttaacc gctcaacact cggcgccggg atcaaccctt
      601 cagcggtagg ccccacattc aacaagtagt ttccaccttt cgatgcgata tcaatcagat
      661 tgcgaataat tacttccggc gatttccact tatcgtcgta gaacttgaac ccccacgtcg
      721 tgttcatcgt catacaactt tcccaatcaa ctccgggcaa tccgttggga ggtatttgtt
      781 gttcgggagt tccaaagtca ccggcataag tttgatcggt cttactcaaa cctttcattc
      841 cctcacgacc tcgaccaaca cgattgttga tgattatgtt tggtttcaaa ctccgcacgt
      901 atttgtagag ttctttgccg tcctcttcgc tccaccaatc ctgccattca ccatcgaacc
      961 agagaactcc gggatcgtat gcagtgacca attcacgaag ctgctccttc atgtatttca
     1021 aatactcttc tttgccgccg ggcttaagct tggtcgttct gtttcccgcc gtcggatctt
     1081 tgccgggcgc ctcgacgtag gctgcgggat agtgccagtc gagaattgaa tagtagaaac
     1141 agaacacgag cccttgtctc ttggcttcgg ctgcgagctc cttgatcggg tcgcggtgat
     1201 aaggtgtcgc gtcgacgatg tcgtagttgc tgactttgct gttgtacagg gcgaagccgt
     1261 cgtgatgttt cgacgtgatc acgatgtact tcataccggc cgccttggcg atgctcaccc
     1321 attctttggc gttgaacttc accgggttga actgcgtcgc aaac
//
LOCUS       DATCGC010001594         1160 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_56832, whole genome shotgun sequence.
ACCESSION   DATCGC010001594 DATCGC010000000
VERSION     DATCGC010001594.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1160)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1160)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1160
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56832"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..692)
                     /locus_tag="VIJ87_15205"
     CDS             complement(<1..692)
                     /locus_tag="VIJ87_15205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445781.1"
                     /translation="MPTKILTSKLVGETKARGVEASNLILNLFFSAVAALVLTEVVGY
                     SRNILLLHPEWISSKRLLANAPMGANEAYFSRNILYRNRLNLHAWHGFNEILLNRVFS
                     LGLLRFKFFLGDNGYLNIVFNKNKDSFCGVRLSRNSKFPSMFFQARTDGKFLLHKPIQ
                     NLVLSQGWHASRMTFEGNSLVVECDGLVRGKFPVEPLRQQVIGFRSGNNVAIVDDVEV
                     LDSDGKLVQREN"
     gene            complement(755..919)
                     /locus_tag="VIJ87_15210"
     CDS             complement(755..919)
                     /locus_tag="VIJ87_15210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445782.1"
                     /translation="MKLVEDHTSLVLCIVAALMFMRPSDVDPYVAKVVQANIQAILPK
                     FVVNTIRQAR"
BASE COUNT          327 a          297 c          257 g          279 t
ORIGIN      
        1 aaattctccc gttgaaccag cttcccatcg gaatccaaga cttcaacgtc gtccactatc
       61 gcgacgttat tgcccgatct gaacccgatc acctgttgcc gaagaggctc cactggaaat
      121 ttccccctca caagaccatc gcattccacg actagagagt tcccctcgaa ggtcatgcga
      181 gaggcgtgcc aaccttgcga aagaaccagg ttctgaattg gcttatgcag taggaacttt
      241 ccatccgttc ttgcctgaaa aaacatgctc gggaatttcg aattccggct caaccgaacg
      301 ccacaaaaag agtctttgtt cttgttgaag acgatattca agtatccgtt gtcacccaga
      361 aagaatttga agcgaagaag tcccagcgaa aacacccggt tgagaaggat ttcattgaat
      421 ccgtgccagg catgaagatt taacctgttt ctatacagga tgtttctcga aaaataagct
      481 tcattggccc ccatcggagc attcgcaagg agccttttac tggaaatcca ctcgggatgg
      541 agcaaaagta tattgcgcga gtatccgaca acttccgtaa gaacaagtgc tgcaacggcg
      601 gaaaagaaaa ggttcaggat caagttggac gcttcaacac cgcgggcctt tgtttcacca
      661 actagtttgg aagttagaat cttggttggc atatgagtta ctgaacgatc tactaattcg
      721 tcacaattca ttcccgcttc gcaaagctgc gcttctaacg ggcttgcctg atcgtattga
      781 cgacgaattt cggcaagatc gcttggatgt tagcctgaac cacttttgca acgtacggat
      841 ccacgtcaga tggccgcata aacatcagcg ccgctacaat gcagagcacc aatgacgtat
      901 gatcctctac caatttcata ttaaaccttc tcagtcaggc caaaacctca gctgaagaat
      961 aaccctgctc ggctaatcta ggctcatact ccctggcaat ataaggtagt aacaatgaaa
     1021 cgcgagtttg ccgaaacgcg gaaccaccaa tcgaaatatt agtgggatga accaaagagc
     1081 aatggcacga gtctttcgta caacttatcc gcaagcagcc ggtgtccacg tgccgtagtg
     1141 tgatggtccc atttggcgat
//
LOCUS       DATCGC010001595         1286 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_357250, whole genome shotgun sequence.
ACCESSION   DATCGC010001595 DATCGC010000000
VERSION     DATCGC010001595.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1286)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1286)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1286
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_357250"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1286
                     /locus_tag="VIJ87_15215"
     CDS             <1..>1286
                     /locus_tag="VIJ87_15215"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY5445783.1"
                     /translation="KQTEPDLLLLDVNLPGMSGLEFLRELKESNGHGPLVIIVTAHGS
                     ERMAVEAVKAGAYDYLSKPFELDDLRLVVKNAAETVQLRRENYSLRRRIEVERSQRGA
                     LIGNSQSMQRVRAMIEKVSETDATVLVRGESGTGKELVAREVHERNSARRNGSFVAVN
                     CAALPSELIESELFGHEKGAFTGAAARREGKFEQADGGTLFLDEIGDMSSNVQAKLLR
                     ALEERRIERLGSNESIPVDVRIVSATHRPLEQEISNGNFRADLFYRLRVVTIEIPPLR
                     DRREDITMLAETFLRTASERYELPQRALSQAALKRLLEYSWPGNVRELKNTIDRAVIM
                     AEGDEVSARDLPDEVTVGIPRSSLAESDEDDGDGLRVPFTADFREDRREFERRYITRC
                     LEHTQGNVTRAAEILDMHRQSLQHKLRQLGLGRRYVS"
BASE COUNT          312 a          313 c          373 g          288 t
ORIGIN      
        1 aaacaaaccg aacctgacct tctgttgctc gacgtcaact tacccggaat gagtggtctt
       61 gaattcctcc gcgagttgaa ggagtcaaac ggtcacggcc cgctcgtgat tattgtcacg
      121 gcccatggtt cagagcgaat ggctgtcgaa gctgtaaagg ccggtgccta cgactaccta
      181 tcgaagcctt tcgaactaga tgatttacga ctcgttgtta agaacgcagc tgaaacagtt
      241 caacttcgcc gggagaacta ttcacttcgg cgacggattg aagtcgagag atcacagcgt
      301 ggtgcgttga ttggaaactc gcagtcaatg caacgagtgc gcgccatgat cgagaaggtt
      361 tcggagacgg acgccacagt cctggttcga ggtgaatccg gtaccgggaa agagttggtc
      421 gcgcgtgagg ttcacgaacg aaacagcgcg cgtcgcaacg gttcttttgt ggcggtgaat
      481 tgcgcagcct tgccttctga attgatcgag tctgagcttt tcgggcatga aaaaggcgct
      541 tttacgggcg cagcagcgcg acgagaaggg aagtttgaac aggccgatgg tggaactttg
      601 tttctcgacg agatcggcga tatgagttca aatgtccagg caaaactctt gcgcgctctt
      661 gaggaaaggc gcatagaacg gcttggcagt aacgaatcga ttccagtcga tgtgcgcatc
      721 gtcagcgcca ctcaccgtcc tttagaacaa gagatcagca atgggaactt tcgtgcggac
      781 ctgttttatc gtctacgggt tgtgacgata gaaattccac cgttgcgtga tcgtcgtgaa
      841 gacatcacga tgcttgctga aacgtttctt cgaacagcgt ccgaacgtta cgaattgccg
      901 caaagagcac ttagtcaggc agctctaaag agactccttg agtattcctg gccgggaaat
      961 gtgcgcgaac tcaagaacac gatcgaccgt gccgtgatca tggctgaagg cgatgaagtt
     1021 agtgctcgtg atttacccga tgaggtaaca gtcggcattc ccaggagtag ccttgctgag
     1081 tctgatgagg acgacggcga tggcttgcgg gtacccttca cggctgactt tcgagaggat
     1141 cgacgagagt ttgaacgtcg ttacatcacg cggtgtttgg agcacacgca ggggaacgta
     1201 acccgcgccg cagaaatcct ggacatgcac cgccaatcac tacagcacaa attgcgacag
     1261 ctcggcttgg gcaggcggta cgtctc
//
LOCUS       DATCGC010001596         2029 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_154824, whole genome shotgun sequence.
ACCESSION   DATCGC010001596 DATCGC010000000
VERSION     DATCGC010001596.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2029
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154824"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..610)
                     /locus_tag="VIJ87_15220"
     CDS             complement(<1..610)
                     /locus_tag="VIJ87_15220"
                     /inference="COORDINATES: protein motif:HMM:NF015651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase
                     domain-containing protein"
                     /protein_id="HEY5445784.1"
                     /translation="MTESDELAEDWQTAESEELPEEVETTPSPRSRRSFAGIQALAFL
                     FGLGLLAYVINKVGVQPLFDALLRIGFGFFIVLGLSGLRHVLRTIAMRAAVPREHRRI
                     SFRNAFAARLGGEAISFLTFTGPLLGEATKVALLRKRVPLTYGVPALVVDNLIYNLSV
                     VFFVLSGACVMLLSYRLPTPVYTVLIMIAAVAALGIAAAALAA"
     gene            complement(607..>2029)
                     /locus_tag="VIJ87_15225"
     CDS             complement(607..>2029)
                     /locus_tag="VIJ87_15225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445785.1"
                     /translation="DLNELHILLQQLQRKDLPVNLRSAATAEFFATIELRRPGWSQTL
                     AELTLELEALHRSIEEQRKLWEAQPKKFSKEDMDAGKDETSKRVFVKLDRSEREERDY
                     TRYASLLKNLIGLTPATLDPAKIRIEDVIPKNSMGDRNSIHELQNYIVGLGSDGLVLN
                     PDGSLNREKSFLRLNYFDLLHGVTVRNGQRALSNHPIDVIATRLDSNLVEAQLHETGL
                     SVDAVWVTDGDKQALLIFKTDSAGQLSIRYQPVKNLVQDQEGTVRFETVEWQPGLPLR
                     IFEDPNLVIPSTNRAEWLSKWHTETEWLEALHRTTYSNGLIGLNEQMVRHPLESLSAD
                     LKLSDNERLRSRLKRRERDLCEPEILLVANNHWNFDVRGFNPGGNHGSFFRISTHSVL
                     MIAGGKKTGIAQGVKIEEPYDSLSFVPTLLALTGNLRDDRTPVPILWEKGFRRFPGRV
                     ITELVPGRHDDRRTSATGASPSP"
BASE COUNT          478 a          500 c          528 g          523 t
ORIGIN      
        1 ttgcggccaa tgctgccgcc gcaattccaa gtgctgctac tgcggcgatc atgatgagaa
       61 ctgtgtacac gggtgtcggc agccggtaac tcagaagcat cacacacgcg ccgctaagca
      121 cgaagaacac aacggagagg ttgtaaatca agttgtcgac gacgagtgcc ggaacgccat
      181 aggtcagcgg gactcgtttt ctgagcaggg ctactttggt tgcttcacca aggagaggcc
      241 cggtgaaagt aagaaagctt attgcttcgc caccaagtcg ggcggcgaaa gcattgcgaa
      301 agctgattcg acgatgttca cgcggaactg ctgcacgcat cgcgatcgtg cgcagaacgt
      361 gacgtaagcc gcttagtccg agaacaatga aaaaaccgaa gccgatgcgt aacagggcat
      421 cgaacaatgg ttggacacca actttattga ttacgtaggc aagtagacca aggccaaaaa
      481 gaaatgcaag tgcctgaatc ccggcaaatg agcggcgtga gcgtggtgat ggagtagttt
      541 cgacctcttc cgggagttct tcgctctcag cggtttgcca gtcttctgcc aactcgtcag
      601 attcagtcaa ggcgatgggc ttgctccagt agctgaagtt cttcggtcgt catgtcgacc
      661 gggcaccagt tctgtaatta cacgtccggg aaaacgtcga aaaccttttt cccacaaaat
      721 tggaacagga gtcctatcat cgcgtaaatt cccggttaat gccaacagcg taggcacaaa
      781 gcttagactg tcgtatggct cttcgatttt taccccttgt gcgattccag ttttttttcc
      841 gccggcgatc attaataccg agtgtgttga gattcggaag aaagatccgt gattaccgcc
      901 ggggttaaac ccgcgcacgt caaagttcca atggttgttg gccaccagga gtatctcggg
      961 ttcacacaaa tcgcgttcgc gtcgttttaa tctgctgcgc agtcgttcgt tgtcactgag
     1021 cttaagatcc gcagagagtg attccagtgg gtgacgcacc atttgttcgt tgaggccgat
     1081 aagcccgttt gaataagtcg ttcgatgaag tgcttccaac cattcagtct cggtatgcca
     1141 cttactcaac cattcagccc ggttcgttga aggtatgaca agatttggat cctcgaaaat
     1201 tcgcaacggc agtcccggct gccattccac ggtttcaaaa cgaactgtac cttcttgatc
     1261 ttgaaccagg tttttgactg gctgatagcg aatgcttagc tgacctgctg aatccgtttt
     1321 gaatatcaac agggcctgct tgtcaccatc ggttacccaa acggcgtcta ctgataaacc
     1381 ggtttcgtgt agttgggcct cgaccaaatt cgagtccagc cgagtggcga tcacatcgat
     1441 cgggtggttg gacaaggcgc gctgtccgtt gcgaaccgtt acgccatgaa gtagatcgaa
     1501 atagttaagt ctgagaaaac tcttttcgcg atttagcgag ccatcggggt taagcaccag
     1561 tccgtctgag ccaagcccga cgatatagtt ctgtagctca tggatactat tccgatcgcc
     1621 catcgagttt ttggggatta catcctcaat ccttattttt gccggatcta atgtggcagg
     1681 cgttagtccg ataaggtttt tcagcagcga agcgtaacgg gtgtagtctc tttcttctcg
     1741 ctctgaacga tcaagcttta caaagacacg cttggaagtt tcatcttttc cagcgtccat
     1801 gtcttctttt gaaaatttct tcggctgtgc ttcccagagt tttctctgct cttcaatgct
     1861 gcgatgaagg gcttcaagtt ccagggttaa ctccgcaagt gtttgtgacc aacctggacg
     1921 acgaagctcg atggttgcaa agaattctgc cgtggcggcg ctacgtagat tcacggggag
     1981 gtctttgcgc tggagctgtt gcagcagtat gtgcagctca ttcagatca
//
LOCUS       DATCGC010001597         2204 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_56885, whole genome shotgun sequence.
ACCESSION   DATCGC010001597 DATCGC010000000
VERSION     DATCGC010001597.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2204
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56885"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..419)
                     /locus_tag="VIJ87_15230"
     CDS             complement(<1..419)
                     /locus_tag="VIJ87_15230"
                     /inference="COORDINATES: protein motif:HMM:NF012893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-transporting P-type ATPase"
                     /protein_id="HEY5445786.1"
                     /translation="MSIARMRVMCVARTFSEPLTPLPGPTESAVVVSHPSAWHAHDRQ
                     VVTASLGVDPEFGLTASQVQKRHLRYGPNALQEVRPRSAWRLLIDQFTSIVIALLAVA
                     AAISWLTGDHAEAVAIFIVLVINAAVGFTTEWQAGRAL"
     gene            661..1023
                     /locus_tag="VIJ87_15235"
     CDS             661..1023
                     /locus_tag="VIJ87_15235"
                     /inference="COORDINATES: protein motif:HMM:NF036463.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5335 family protein"
                     /protein_id="HEY5445787.1"
                     /translation="MQTKEIQQIEWRQFFNDFSRKHQGSPVGIEVLGSELGAQSAGNG
                     LPLEGITAEWNEVSGNKIMIMIGANADEHVTHSINQPTQVSLEQTDEDADVALAIKAI
                     DGSTALLRFQPSILPETV"
     gene            complement(1120..2022)
                     /locus_tag="VIJ87_15240"
     CDS             complement(1120..2022)
                     /locus_tag="VIJ87_15240"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEY5445788.1"
                     /translation="MIKVNDKPQVPAIEFKNVCLSFGSQQVLTDISFTLAHGEMLVIT
                     GVSGAGKSVLLRLAMGLLKPDSGQIVIEGRHIETLKESDLLNIRGGLMGMVFQEDSLF
                     TGLSVYDNAAYRLVEHGWSEQDVEKAVRETLSFVGLEGEETKLPEELSGGMKRRLEIA
                     RALIGWPRIMLFDEPTMGLDPIVSIKVLDLIIRARDIKQISSLYVTKKIYEIPYLANF
                     SALTRQDGDVITAEAPLEKLPKTKMIVLDEGEIVFTGSVEEFKESELPVIKELAALDR
                     NDHSHDPYFTDPWDKRRRPQEAIL"
BASE COUNT          533 a          566 c          577 g          528 t
ORIGIN      
        1 agagcacggc cggcctgcca ttccgtggtg aaacctaccg ccgcgttgat aacgagcacg
       61 atgaaaatcg ctaccgcttc ggcgtggtcg cccgtcaacc aggagatcgc cgcggcgact
      121 gctaagaggg cgattacgat gctagtgaac tgatcgatga gcaggcgcca tgcggagcga
      181 ggccgaactt cttgcagcgc atttggaccg tagcgcaggt gtcgtttttg aacttgcgag
      241 gccgttaggc cgaactccgg atccacgcca agggaggcag tcacaacctg tctgtcatga
      301 gcatgccatg ctgacggatg tgatactaca actgctgact ctgttgggcc gggaagcgga
      361 gtcagcggtt cagagaaggt tcttgcgaca cacatcactc gcatacgggc aatgctcatg
      421 cctttcggtg caggcgataa gtgccgaatt ttcgagcact atgggacggc gcagatgtgc
      481 gagacggatc agcgcgataa tttgcgtaaa cttcccagtc aggtgcgaga aaccccgcaa
      541 ggcaatcttc atcttaggga ttgctttttg ttatctgttg gaccgtcttc gcacaatcga
      601 tgctgggcac attcattgct ggttgaaatc gctagagaaa ctcagaaagg gaacacagca
      661 atgcaaacaa aggaaatcca acaaatcgag tggcgacagt ttttcaatga tttcagtcgc
      721 aagcaccagg gttcgccagt aggtattgag gttcttggat ccgaactagg cgcgcagtca
      781 gccggcaatg ggctacccct cgaaggaatc acagcagagt ggaatgaggt gtcaggcaac
      841 aagatcatga tcatgattgg cgcgaacgct gacgaacacg ttacgcattc cattaaccaa
      901 ccgacccagg tgagcctcga gcaaacggat gaagatgctg atgtcgcact cgcgatcaaa
      961 gcaatcgatg ggtctactgc gttgttacgc tttcagccgt cgatcttgcc ggaaactgtt
     1021 taggctatgc tccactgaac ctattagact cgtcatcact tgccggcaac gactaggaag
     1081 accgaagcgg ttcgcctaat cattgccggc aagttctatt tatagaatcg cttcttgcgg
     1141 gcgccgccgc ttgtcccagg ggtcagtgaa gtaagggtca tgggagtggt cattacgatc
     1201 aagcgccgct aattctttga ttaccggcaa ctcactctct ttaaactcct caacagagcc
     1261 agtgaagact atttccccct catcgagaac gatcattttt gttttcggca acttctcgag
     1321 tggagcttcc gcggtgatta cgtcgccgtc ttgccgggtt agagcagaaa agtttgcgag
     1381 atacgggatc tcatagattt tcttggtgac gtagagcgat gaaatctgct ttatgtctcg
     1441 agctcgaatg atgaggtcaa gtactttgat ggagactatt ggatcgagcc ccatggtcgg
     1501 ttcgtcaaat aacatgatgc gcggccatcc aatcaatgcg cgagcaatct caagacgacg
     1561 tttcattcct ccggagagct cttcgggtaa cttggtctcc tcgccttcaa ggccaacaaa
     1621 acttaaggtc tcacgtacgg ctttctcgac gtcctgctcg gaccaaccgt gttccaccag
     1681 gcgataagcg gcgttgtcgt agaccgataa cccggtaaac aatgaatctt cctgaaatac
     1741 cattcccatc aatccaccac ggatgtttag taggtctgat tcctttagcg tttctatgtg
     1801 tcgaccctca atcacgatct ggccggagtc aggtttgagc aggcccattg ccaggcgaag
     1861 tagtacggat ttgccagctc ccgagacacc ggttatgacc agcatctcgc catgtgcgag
     1921 ggtgaagcta atgtcggtca aaacctgttg tgatccgaaa cttaggcaca cgttcttaaa
     1981 ctcgattgcc ggtacttggg gtttgtcatt taccttgatc atgtattgag ttcctcctga
     2041 gaccatccaa ttcggcaacg ctcatgccgt tcttaaaagt tctcaatcga ggcggcattc
     2101 actgtttcgc tgccaaacat ttgccgggcg aaacaattgt tgcgggaaaa tccagtgtgg
     2161 tgcgtaatac ctcgcaaccc atccggcaaa cctcggagat agca
//
LOCUS       DATCGC010001598         3175 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_421112, whole genome shotgun sequence.
ACCESSION   DATCGC010001598 DATCGC010000000
VERSION     DATCGC010001598.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3175)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3175)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3175
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_421112"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..971)
                     /locus_tag="VIJ87_15245"
     CDS             complement(<1..971)
                     /locus_tag="VIJ87_15245"
                     /inference="COORDINATES: protein motif:HMM:NF012602.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEY5445789.1"
                     /translation="MSKVENLDQIINSFGPHLHDAPYDGWRADRVIDRVVPTHCPYCA
                     VQCGMNLLVEKNHVVGFEPRYDFPVNEGRLCPKGVTAYLQVHHPDRLLYPLIKRNGRF
                     ERASWDEALDLVVSKFKELQATHGKDSVGVYSGSSLTTEKTYLMGKFARAGLGTRYID
                     YNGRLCMVSAAAGNNKAFGIDRAANPWDDIPFAEVLLIAGSNCAETFPVLNKFLWQQR
                     DNGGRWIIVDPRETPTARQGDLHLQLKPGTDVALANGMLHVLVEENLVDQGFIDSRTN
                     DWEATRELAKRYSPDVASQICGVPAEKIVQAARMYGRAKTGMVMHARG"
     gene            complement(1196..2254)
                     /locus_tag="VIJ87_15250"
     CDS             complement(1196..2254)
                     /locus_tag="VIJ87_15250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445790.1"
                     /translation="MTSPSTNRKPVLLGLAASFLLTVLIIAGSRNLEHYDSALFGYTI
                     ASVVAFGAIVFRYAIWLQRPATRVYWRRGWKLYLQREKFAQNTANAAKTLATNIVGQR
                     FIFKRGFSRWAMHFLIMWGCVLSAMVTFPLVFGWVHFKLEGELGYRAYVFGFPLNVMQ
                     GRSVIAWVTFHALDFTAVMVIAGCAIAIHRRLRDRGAIALQQFTLDFVPHMLLIAISV
                     TGLMLTASSLWLNGYMYHFIALTHQATVIMTLFYLPFGKLFHVVQRPASIGVELYQER
                     AREMPQAACARCGAEFVAQLWLDDLKTVVDTLGFDYSMSDGKVLQDYCPRCKRIMRGL
                     AYANLRGSSEKVFKGSRG"
     gene            complement(2339..2899)
                     /locus_tag="VIJ87_15255"
     CDS             complement(2339..2899)
                     /locus_tag="VIJ87_15255"
                     /inference="COORDINATES: protein motif:HMM:NF013936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEY5445791.1"
                     /translation="MLSKAGRLLTDDHIALDNLQGQLKSALLADDIEATHSRLDMFWS
                     RLAVHIRAEHLQLFPAVIEALTVSSRSQTFAPTLTEARSTIEKLRSDHDFFMHGLGQA
                     IKISRALSHEDRETLDHGMKSVRSMMIEIEKRLVSHNQLEETKIYAWTTTILNSREQT
                     ELAKRISIELANRPPRFSLDEWTTSP"
     gene            complement(2908..>3175)
                     /locus_tag="VIJ87_15260"
     CDS             complement(2908..>3175)
                     /locus_tag="VIJ87_15260"
                     /inference="COORDINATES: protein motif:HMM:NF020553.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1858 domain-containing protein"
                     /protein_id="HEY5445792.1"
                     /translation="LTANTTVGEVLTRYPQSLEIFVRLGFTPLRNPVLRNTLARVITI
                     EQACRRENIDMSNLLRELEQLSVNETAIATPLVSITRLEQSQVN"
BASE COUNT          772 a          843 c          819 g          741 t
ORIGIN      
        1 ccacgtgcat gcatcaccat tccggttttc gcgcgaccgt acattcgtgc tgcttgcacg
       61 atcttttctg ccggcactcc gcagatttgc gacgccacat caggtgaata acgctttgcc
      121 aattcgcgcg tcgcttccca atcgtttgtt cgtgaatcga tgaaaccctg atcgacaagg
      181 ttctcttcaa cgagcacgtg caacattcca ttcgccagcg ctacgtcggt accgggcttc
      241 aactgaagat gcagatcgcc ctgtcgtgcg gttggtgttt cgcgcggatc gacgatgatc
      301 cagcgaccac cattgtctcg ttgttgccag agaaacttgt tgagtacggg aaaagtctcg
      361 gcgcaattcg atccagcgat cagcagcact tcagcaaaag gaatgtcgtc ccagggattg
      421 gcggcacgat cgattccgaa agctttgttg ttgcccgccg ccgccgagac catgcagagc
      481 cgtccgttgt aatcaatgta gcgggtgccg agtccggcgc gcgcaaactt gcccattaaa
      541 tacgtctttt ccgttgtcaa agaagatcca gaatagacgc caacagagtc cttgccgtga
      601 gtcgcttgca gttctttgaa tttgctgaca accagatcaa gtgcttcatc ccaactggcc
      661 cgttcgaaac gcccattccg tttgattagt ggataaagca aacgatccgg gtgatgcact
      721 tgtagatatg cggtcacgcc tttgggacaa agccgtcctt cgttaaccgg aaagtcgtaa
      781 cgcggctcga aacctacgac atggtttttc tctacgagaa ggttcattcc acattgcaca
      841 gcgcagtaag gacaatgcgt gggaacaact cgatcgataa cccgatccgc gcgccagcca
      901 tcgtacgggg catcatgaag gtgcggccca aacgagttta tgatctgatc gagattttca
      961 actttactca tgacgtcaac ttccccgcaa aacacactgg gcgcccgttc ccacctctgc
     1021 ggctttgccg ctttccgtgc ggaaaggctc tggctttccg tcgagcccac gattcttttg
     1081 gcggctctgc cgcccgaggc gaagcctctt atttctaacg tcctaacgga aagccagagg
     1141 ctttccgcac aggaggaggc agagcctcag cgcgcggcgc aggctgtgag atctcctagc
     1201 cacgagatcc tttgaaaacc ttctctgagc tgcctcgtaa attcgcatat gccaatccgc
     1261 gcatgattcg tttacaacgc ggacaataat cctggagcac cttgccatca ctcatcgaat
     1321 aatcgaatcc caacgtatcc acgactgttt tcaagtcatc gagccagagt tgcgcgacaa
     1381 actctgctcc gcaacgagcg caagcagctt gcggcatttc gcgcgcgcgt tcctgataaa
     1441 gctcgactcc gatcgatgcc ggtcgctgca ccacgtggaa aagttttccg aacggtagat
     1501 agaagagcgt catgatcacg gtcgcttgat gcgtcaaagc aatgaagtga tacatgtagc
     1561 cattcagcca aagactcgaa gccgtcagca tcaagccagt gactgaaata gcaatcaaaa
     1621 gcatgtgtgg cacaaagtcg agagtgaatt gttgtaacgc tatggcgccg cgatctcgga
     1681 gtcgtcggtg aatcgcaatc gcacaaccgg cgatgaccat aactgccgtg aagtcgagcg
     1741 cgtggaacgt tacccaggcg atcacgctgc ggccctgcat aacattcaac ggaaaaccga
     1801 agacataggc ccgatatcca agttcacctt ccaacttgaa gtgtacccag ccaaacacga
     1861 gtggaaacgt gaccatcgct gacagcacgc agccccacat aattagaaag tgcatggccc
     1921 aacgagagaa gccgcgcttg aaaataaaac gctgacccac aatgttggtg gcaagcgtct
     1981 tagcggcgtt cgcggtgttc tgcgcaaact tctctcgctg caggtaaagt ttccatcctc
     2041 gacgccagta gacgcgggtc gcaggccgct gcaaccagat tgcatagcga aaaactattg
     2101 cgccgaaagc aaccacgctc gcgatggtgt agccgaagag tgcggaatcg taatgttcaa
     2161 gattgcgaga acccgcgatg attagaaccg tcagcaggaa cgaagcggcc agcccaagta
     2221 ggacaggttt gcgattggtc gacggacttg tcatagacag tcgatatcgg agttatggga
     2281 ctgggaaaac tcaggaggcg ccatgtttat accacgaata cctggatacc cggactaatt
     2341 atggtgatgt tgtccattcg tcgagcgaga acctcggagg tcggttggcc agctcaatgc
     2401 ttattctctt tgcgagctct gtctgttcac ggctattgag aatagttgtt gtccacgcat
     2461 aaatcttcgt ctcttccaac tgattgtggc tgacgagtct tttttcgatt tcaatcatca
     2521 tgctgcggac tgacttcatt ccatggtcga gggtctcacg atcctcgtgt gaaagagcac
     2581 gcgagatctt aatagcttgc cccagcccat gcatgaagaa atcatgatct gatcgtagct
     2641 tctcaatcgt tgaacgggct tcggtcaaag tcggggcaaa ggtttgtgag cgcgacgaaa
     2701 cagttaaggc ctctatgact gccggaaaaa gttgtagatg ctccgctcga atatgaacgg
     2761 ccaaacgtga ccagaacata tccagccgtg aatgggttgc ttcgatatcg tccgcaagta
     2821 aagcagactt aagttgcccc tggaggttat ccagggcgat atggtcatcg gttaataatc
     2881 gtcccgcttt cgacagcatg ggcgttccta gttaacttgc gattgttcaa gccgtgtgat
     2941 tgaaacgagg ggagttgcga tcgccgtctc attaaccgac aactgctcaa gttcgcgaag
     3001 gagattactc atgtcgatgt tttcgcggcg gcaagcctgc tcaattgtga tcacgcgtgc
     3061 cagtgtgttg cgtagtactg gattacgtaa cggcgtgaat cccaggcgta caaagatttc
     3121 cagtgattgt ggatagcgag ttagtacttc accgactgta gtgtttgctg ttaac
//
LOCUS       DATCGC010001599         1061 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_357370, whole genome shotgun sequence.
ACCESSION   DATCGC010001599 DATCGC010000000
VERSION     DATCGC010001599.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1061)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1061)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1061
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_357370"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..654
                     /locus_tag="VIJ87_15265"
     CDS             <1..654
                     /locus_tag="VIJ87_15265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002389231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HEY5445793.1"
                     /translation="AGKKQVAPKSANQRKYIQAIQEKDVVFGIGVAGTGKTYLAVAMA
                     VQSLMQKQVNRIVLARPAVEAGEKLGFLPGDLQDKVDPYLRPLYDALFDLIDYERATR
                     LLEKRVIEVAPLAFMRGRTLSDAFIILDEAQNTTSEQMKMFLTRIGFGSKAVITGDVT
                     QVDLPTGKRSGLIEAERILANLDDIEFIYFTDKDVVRHKLVQLIIRAYEEQGKKSQI"
     gene            654..1058
                     /gene="ybeY"
                     /locus_tag="VIJ87_15270"
     CDS             654..1058
                     /gene="ybeY"
                     /locus_tag="VIJ87_15270"
                     /inference="COORDINATES: protein motif:HMM:TIGR00043.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HEY5445794.1"
                     /translation="MIEVVNRQRTRKIATSPWISRTTKMLDALGKSESSVTIAFVSDS
                     KIRTLNKTFRGIDKPTDVLSFPAEEGNELGDIAISVETAARQAKENGLTLTGEIAQLI
                     LHGLLHLSGYDHETDNGEMNKEELRLRKKLRL"
BASE COUNT          294 a          261 c          272 g          234 t
ORIGIN      
        1 gccggcaaga aacaagtcgc gcccaagtcg gcaaatcagc gcaagtatat ccaggcgata
       61 caggagaagg acgtcgtctt cggcattgga gtggccggca ccggtaagac ctacctggca
      121 gtggctatgg ccgtacagtc gctaatgcag aagcaagtta accgaattgt cctggcgcgt
      181 cctgccgtcg aggctggtga aaaacttggc ttccttccgg gcgatctaca agacaaagtc
      241 gatccgtatc tgcgtcctct ttacgacgcg ttatttgatc taatcgacta cgagagagcc
      301 actcgactgc ttgagaaacg agtcatcgaa gttgctcccc ttgcgttcat gcgcgggcgc
      361 acgctgtcag acgctttcat cattcttgac gaagcgcaga acacaaccag tgaacagatg
      421 aagatgtttt tgacccgcat cggcttcggt tcaaaagcag tcatcacggg cgacgtcacc
      481 caggtggacc tgccaactgg aaaacgcagc ggtctaatcg aagcggaacg aatactcgct
      541 aacctcgacg acatcgaatt catttacttc acagacaagg acgttgtacg tcacaaactt
      601 gtccagttga tcattcgcgc ttacgaagaa cagggcaaga aaagtcagat ttgatgattg
      661 aagtagtcaa ccgccaacgc acgcgaaaga tcgcaacctc tccctggatt agtcgcacaa
      721 caaagatgct cgacgctctg ggcaagtctg aatcgtctgt gacgattgct tttgtctctg
      781 attcaaagat acgaactctc aataaaactt ttcgtgggat cgacaagcct actgatgttc
      841 tatcttttcc agctgaggaa gggaatgaat taggcgacat cgcgatctcg gtggaaacgg
      901 cagcgagaca ggcaaaggaa aacggtctta cattaacagg cgaaatcgct cagttgatcc
      961 tgcacggctt gcttcacctc tcaggttacg atcacgaaac tgacaacgga gaaatgaata
     1021 aagaagagtt gaggttgagg aagaagttgc gattgtaggt t
//
LOCUS       DATCGC010001600         1064 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_255490, whole genome shotgun sequence.
ACCESSION   DATCGC010001600 DATCGC010000000
VERSION     DATCGC010001600.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1064)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1064)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1064
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_255490"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1064)
                     /locus_tag="VIJ87_15275"
     CDS             complement(<1..>1064)
                     /locus_tag="VIJ87_15275"
                     /inference="COORDINATES: protein motif:HMM:NF016497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase 43 family protein"
                     /protein_id="HEY5445795.1"
                     /translation="NVFAKPQHGNGVWAPAIRYHDNYFYIFYPDPDYGIYMTKARNPA
                     GPWTAPLLIKSAKGWIDPCPFWDDDGNAYLVHAFANSRAGIKSVVHIAKMTADGTTVL
                     DDDRLVFDGHEHHPTIEGPKLYKRNGYYYIFAPAGGVPTGWQTVLRSKNIYGPYEDKI
                     VLDQGQTQVNGPHQGAWIELKSGESWFIHFQDRGAYGRIVHLQPMQWLNDWPVIGIDK
                     DGDGKGEPVAVYKKPNVGGKYPVGVPQTSDEFAVHSLAPQWQWHANSDRSWASLVDRT
                     GWLRLNSIPLPLEAVNLWSVPNLLLQKLPAPTFTLTTKVDANGLLPNEEAGVVMMGMD
                     YSYLAVVKTESGFRLERTIC"
BASE COUNT          241 a          283 c          267 g          273 t
ORIGIN      
        1 tgacaaatcg tccgctcgag tctgaatccg ctttctgttt tcacgactgc gaggtaggaa
       61 taatccatcc ccatcatcac cacacctgct tcctcattcg gcaacagacc attcgcatcg
      121 acctttgtgg tcaaggtaaa cgttggcgca ggaagttttt gcagcagcag atttggcacc
      181 gaccaaagat ttactgcctc gagtggcaag ggaatggaat taagtcgcaa ccatccggtt
      241 cgatcgacta gagaagccca ggagcgatca ctgttggcgt gccattgcca ttgaggagcc
      301 agactgtgaa cagcgaactc atctgaagtt tgtggaacgc caaccggata ctttcccccg
      361 acgtttggct tcttgtatac cgcaaccggc tcacctttgc cgtcaccatc cttatcgatc
      421 ccgataactg gccagtcgtt cagccactgc attggttgta gatgaacgat tcgaccatac
      481 gcgccgcggt cttgaaagtg aatgaaccac gattctcctg acttcagttc gatccatgca
      541 ccctggtgcg ggccattcac ttgagtctgt ccctggtcca aaacgatctt gtcttcgtat
      601 ggtccgtaaa tgtttttcga acgaagaact gtttgccacc cggtaggcac gccgcccgcc
      661 ggcgcgaaga tgtagtagta accgtttcgt ttgtaaagtt ttggtccttc aatggtcgga
      721 tgatgttcgt ggccatcaaa cactagacga tcatcatcaa ggaccgtcgt tccgtcagca
      781 gtcatcttcg cgatatgcac aacgcttttg atgccggcgc gactattggc aaacgcgtga
      841 accaggtatg cgttgccgtc gtcatcccaa aacggacagg gatcaatcca tcctttcgcg
      901 cttttgatta gaagtggcgc agtccatggt ccagcaggat tccgggcctt ggtcatgtag
      961 atgccgtaat cgggatcggg atagaagatg tagaaatagt tgtcgtggta tctgattgcc
     1021 ggtgcccaca caccgttgcc gtgttgtggt ttcgcaaaaa cgtt
//
LOCUS       DATCGC010001601         1144 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_222622, whole genome shotgun sequence.
ACCESSION   DATCGC010001601 DATCGC010000000
VERSION     DATCGC010001601.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1144)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1144)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1144
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222622"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..261)
                     /locus_tag="VIJ87_15280"
     CDS             complement(<1..261)
                     /locus_tag="VIJ87_15280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445796.1"
                     /translation="MLRYPPKRLAQVILVVIIAGMEVSANASPPSLQIQSEEQPVYTN
                     YKGVQIGMSIEEARKKLGEAADKNAGQDFYEFSPDEMAQVSYN"
     gene            complement(285..659)
                     /locus_tag="VIJ87_15285"
     CDS             complement(285..659)
                     /locus_tag="VIJ87_15285"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY5445797.1"
                     /translation="MPPTTGNGKICYIQIPATDIARSAEFYQSIFGWNVRHRSNGSTA
                     FDDGVGEVSGEWVTGRAPSGQPGLLFYIMVDSVAETIEAIIADGGEVVQPIGADHPEI
                     TARFRDPGGNIIGIYQEPVTST"
     gene            complement(723..>1144)
                     /locus_tag="VIJ87_15290"
     CDS             complement(723..>1144)
                     /locus_tag="VIJ87_15290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445798.1"
                     /translation="PDPNIVWDYNVDRFNPRGVYYILGPRPKAFPEFDCLELAVYPSD
                     GKAVGQVMIQIVVNRTYEAQFPVSGLVTEHGLSFATTAPSDNQYDYTFDGYFLRTGVL
                     SNARKNDAVLEGRITKSKNGVRVAEATIRFRVEYLGC"
BASE COUNT          251 a          289 c          303 g          301 t
ORIGIN      
        1 gttgtacgag acctgcgcca tttcgtccgg tgagaactca tagaagtcct gacccgcatt
       61 cttgtctgcg gcctctccga gtttcttacg cgcctcttcg atactcatgc cgatttggac
      121 acctttgtag tttgtgtaga cgggctgctc ttcgctttgg atttgtaaag aggggggcga
      181 tgcgttagcg gaaacttcca ttccggcgat gatcactacg aggattacct gtgcaagccg
      241 tttaggggga taacgtagca tctggttttc cgtcgatgtg aatttcaggt ggacgtgact
      301 ggctcttgat agatcccaat gatgttgccg ccgggatcgc gaaatcttgc agttatctca
      361 ggatggtcag cgccaatcgg ctgcactact tcgcctccgt cagcaatgat tgcttcgata
      421 gtttcagcga cgctatcgac cataatgtag aacagtaaac cgggctgacc ggaaggtgcg
      481 cgaccggtaa cccattcgcc gcttacctca ccgacaccat catcaaatgc cgtcgatccg
      541 ttactgcggt gtctcacgtt ccagccgaag atgctttgat agaactcagc cgaacgcgcg
      601 atgtcggtcg ccgggatttg gatgtagcaa atctttccgt tgccggttgt gggtggcata
      661 agaaatttgc cgctagcata tacacgcaaa cggcaattgc cacaaccttt gtgagtagtt
      721 cttcagcagc ctaagtactc aacgcggaat ctgattgtgg cttctgcaac ccgaacgccg
      781 tttttggatt tggtgatgcg accttcgaga accgcgtcgt ttttacgcgc gttggataaa
      841 actccagttc tcaggaagta tccatcgaag gtgtaatcgt actggttgtc tgacggagcg
      901 gtggtagcga agctcagccc atgttcggta accagacccg acactggaaa ttgcgcctcg
      961 taggtgcgat tcacaacgat ctgaatcatc acttggccca ctgctttccc atcgcttggg
     1021 tatacggcca attcgaggca gtcaaactct ggaaatgctt ttggtctggg tccgagaatg
     1081 tagtaaacgc cgcgaggatt gaatcggtct acattgtagt cccaaacgat attcggatca
     1141 ggtg
//
LOCUS       DATCGC010001602         1229 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_57032, whole genome shotgun sequence.
ACCESSION   DATCGC010001602 DATCGC010000000
VERSION     DATCGC010001602.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1229)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1229
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57032"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            386..>1229
                     /locus_tag="VIJ87_15295"
     CDS             386..>1229
                     /locus_tag="VIJ87_15295"
                     /inference="COORDINATES: protein motif:HMM:NF022732.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3089 domain-containing protein"
                     /protein_id="HEY5445799.1"
                     /translation="MLRRLLVVSMLGAFLLAIAIGLAGAQNQTAPAVAQTKNDYSKSD
                     TWLCRPGNHDACDIDLTTTVISANGKLTKETWAADPKAPIDCFYVYPTVSNDQSGNSD
                     MVANTEELNVIKAQAARFGSQCRVFAPLYRQVTLGALRAILAGRVMPVDRNLAYNDVL
                     DAWNYYLQNDNKGRGVVLIGHSQGSMMLTQLIKNEIDGKPVQGRIISALLLGTNLPVP
                     KGKDVGGAFQNIPLCRSNKQTGCVVTYASFRSNVPPPANSRFGKVSGADMMSACTNPA
                     ALGGG"
BASE COUNT          299 a          299 c          347 g          284 t
ORIGIN      
        1 caagattgag tttacgctga aagttgatgc acaggggcaa gctctaacta tcaagtacgc
       61 cggcacgatt gagaaagacg gaacgatgaa gggaacggcc gagctgggcg aacttggttc
      121 agcgacctgg accgcgaaga agcaataagg actcgagcat acctaagcgt gttcgtcttc
      181 atggatggtc gattctcatt ctcatcgtgg ctttagcccg gtgctaggtt ggacggtctt
      241 cggtgcggca caaatcaaaa tcgttgggcg aggcggagta aaccgttgaa acggtttcat
      301 tcctgtcgag tagcgtgtca ccgggctgaa gcccggtgag aatgagaagg tggcagaggt
      361 aaaccacgag aggagcagaa cattcatgtt aagacgtctt cttgttgtat cgatgctcgg
      421 ggcttttttg ttggccattg cgatcggctt agctggtgca cagaatcaga cggcgccggc
      481 agtggctcaa acgaagaacg attacagcaa atctgatacg tggctttgtc gaccgggaaa
      541 ccacgacgcc tgcgacatcg atctcacgac cacagttatt tcggcaaacg gcaagcttac
      601 aaaagaaaca tgggccgccg atccaaaagc acctatcgat tgtttctacg tctaccctac
      661 tgtttcgaac gaccagtcgg gtaatagcga catggtcgcc aacacagaag aactgaacgt
      721 cattaaggcc caggcagcgc gctttggttc acagtgtcgc gtgttcgcac cgctctaccg
      781 gcaggttact ctcggggcct tgcgtgcgat tctggctggt cgagtgatgc cagttgatcg
      841 gaatcttgct tacaacgatg tgctcgacgc ctggaactac tatttgcaaa acgacaacaa
      901 gggccggggc gtagttttaa tcggtcactc gcagggctcg atgatgctga cgcaactaat
      961 caagaatgag attgatggca agcctgttca gggtcgaatc atttcggcgc tgttgttggg
     1021 aaccaatctg ccggtaccaa aaggcaagga cgtcggcggt gcatttcaga acatcccact
     1081 gtgccgttcg aataaacaaa cgggttgcgt tgttacctat gcctcattcc ggtcgaatgt
     1141 gcctccacct gctaatagtc gatttggaaa agtttccggt gccgacatga tgtctgcttg
     1201 taccaatccg gccgctctcg gtggcggta
//
LOCUS       DATCGC010001603         2377 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_222719, whole genome shotgun sequence.
ACCESSION   DATCGC010001603 DATCGC010000000
VERSION     DATCGC010001603.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2377)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2377)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2377
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222719"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1457)
                     /locus_tag="VIJ87_15300"
     CDS             complement(<1..1457)
                     /locus_tag="VIJ87_15300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445800.1"
                     /translation="MPASPRQQVYEKFKQIDGCHPWRKVSPDGFVDYSVRSRPHGRVL
                     FFNFPLAKEMGLVPTNHDGTVDKELEEAILETFSLIIINEYDISQGKKFPPETVRPKP
                     YMATRYLQTQHKNRQGKTSGDGRSIWNGYLRNKGLTFDISSRGTGATILSPGAQKAEG
                     IVKTGDESYGYSSGLAELDEMLGSAMMSEIFYRQAIPTERCLAVIGFPDGTAIGVRSA
                     PNLIRPAHIFRYLKQSKFRELKASVDYFIDREVENGIWTISENEKTRYAQALDYFARS
                     YGKLAAVLEEEYIFNWLAWDGDNILASGAILDYGSIRQFAAKHDKYRFKDVDRYSASL
                     VEQRKWARVLVQVFAQAMAFIETGKKQNLKKFKDAECLKVFDLAFADEREYRILWRIG
                     FEPDQINHLLSHSRAEIKDFQKALVYFESLKISRGIERLPDGYTHNPIFLIRNLLRLL
                     PAYLVAQAITRVDDESAYMPGDIFCRVMAASYASR"
     gene            complement(1597..2250)
                     /locus_tag="VIJ87_15305"
     CDS             complement(1597..2250)
                     /locus_tag="VIJ87_15305"
                     /inference="COORDINATES: protein motif:HMM:NF018712.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1326 domain-containing protein"
                     /protein_id="HEY5445801.1"
                     /translation="MRKVLFTLMAVIVAVSAFVFSSRAENVSMRGDYVEVRTASVFAG
                     ACHFNGEVTTAGREAMMAWNVTSGKWQGVDLAGVKVMAIVSSDANLSDKDAARQSEIV
                     IDSPSRQQSLAMLNAIKEKYAASLGNIVKVRNATISFVREGKTYAVAADDATINVEAM
                     PNDLCCKMPNLVWYTPMVGLENRKVGYTTNASYSGNTVSEQWSRSGENSAFYGSFSL"
BASE COUNT          550 a          627 c          599 g          601 t
ORIGIN      
        1 ttcctgctgg cgtatgaagc agccatcact cgacaaaaaa tatcgccggg catgtacgcg
       61 ctttcgtcgt cgactcgtgt gatcgcctgg gccaccaggt aggcgggcaa caaccgcagc
      121 aaattacgga tgagaaagat tggattgtgg gtgtaaccgt ccggtaggcg ctcgatgcct
      181 cgcgagattt tgagactctc aaaatagacc aacgctttct ggaagtcttt gatctcagct
      241 cgagaatgac ttaggagatg gtttatttgg tcgggctcaa atccgattcg ccagaggatc
      301 ctgtattcac gttcatcggc aaaggcgaga tcgaacacct tcaggcactc cgcatccttg
      361 aacttcttta agttctgttt cttccccgtc tcaatgaacg ccatggcttg agcaaagacc
      421 tgaacgagga cgcgtgccca tttccgttgc tccacgagtg acgcggagta tcgatcgaca
      481 tccttaaagc gatatttgtc gtgcttcgcg gcgaactgtc gaatcgaacc gtagtctaga
      541 atcgcgccac tggcgagaat gttgtctccg tcccaggcta accagttgaa gatgtactcc
      601 tcttcgagaa ctgcggcgag tttgccatac gagcgcgcga agtagtcgag tgcctgtgcg
      661 tagcgagttt tttcgttttc cgaaatcgtc caaatcccat tttcgacttc gcggtcgatg
      721 aagtagtcga ctgaagcttt cagttcccta aacttcgact gttttagata acgaaaaatg
      781 tgggccggcc taatcaggtt tggcgcgctt cttactccga tagctgtgcc gtccgggaaa
      841 ccgatgacgg caaggcaacg ctcagtggga atggcttgac gataaaagat ctccgacatc
      901 atggcactac caagcatctc gtccagttcg gcaagccctg atgagtagcc gtaactttca
      961 tcgcccgtct tcacgatgcc ctcggccttt tgggcgccgg gactcaggat ggttgcgccc
     1021 gtgccgcgac tcgaaatgtc gaaagtgagt cccttgtttc gcaagtaacc attccagata
     1081 cttctgccgt cgccagaggt tttgccttgt ctgtttttgt gttgagtttg gaggtagcga
     1141 gtcgccatgt acggcttggg ccgcacagtc tctggcggaa acttcttccc ctggctgatg
     1201 tcgtattcgt tgatgattat tagcgagaag gtttccagaa tcgcttcttc caattccttg
     1261 tcgaccgttc cgtcatgatt cgtcggaacc aaacccatct cttttgctag cgggaaattg
     1321 aagaagagga cacgaccgtg aggacgggaa cgaaccgaat agtcaacgaa gccatccggg
     1381 ctaaccttac gccacggatg acaaccgtct atttgtttga acttctcgta cacctgctga
     1441 cgaggagaag ctggcaactg atgaagtatt agaaccgagt ggcgaaagag tcaacctatt
     1501 tttgtgtggt tcggggattc gtgatgatct cgagcaaaac aaaagatgcc accgattgct
     1561 cggtggcacc aggtaccaaa ccacttctaa tctagattac agcgagaagc ttccgtagaa
     1621 agcgctgttc tcaccggaac ggctccactg ttcactcact gtgtttccag agtagctggc
     1681 gttcgtggtg tagcccactt ttctgttctc aagaccgacc atcggtgtgt accaaaccag
     1741 gtttggcatc ttgcagcaga gatcattggg cattgcttcg acgttgatag ttgcgtcgtc
     1801 agctgcgact gcgtaggttt tgccttcgcg aacgaagcta atcgtcgcat tgcgaacctt
     1861 gacgatgttg cccaacgacg cagcgtactt ctccttgata gcgtttagca tcgcaagaga
     1921 ttgctgacgc gagggactat cgataacgat ttccgactga cgtgcggcgt ccttgtcgct
     1981 caggttcgcg tccgaactga caattgccat tactttcaca ccggctaaat caacgccctg
     2041 ccattttccg gaagtaacat tccacgccat cattgcttcg cgacccgcag tagttacctc
     2101 accgttgaag tgacacgctc cggcaaaaac gctcgcggtt cgtacctcaa catagtcgcc
     2161 gcgcatgctg acattctcgg cgcgggaact aaaaacaaat gcgcttaccg ctacgataac
     2221 cgccatcaaa gtgaataaaa cttttctcat tgcttgttac ctccaaatcc aagtgtgcaa
     2281 cgaaagcggg tgagtttgca aagcccgtgt ccgataagct tcagcttgtc gtgactctat
     2341 cagcgggaca aagccgttca cagaccgctt aactaat
//
LOCUS       DATCGC010001604         1003 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_26477, whole genome shotgun sequence.
ACCESSION   DATCGC010001604 DATCGC010000000
VERSION     DATCGC010001604.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26477"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(426..626)
                     /locus_tag="VIJ87_15310"
     CDS             complement(426..626)
                     /locus_tag="VIJ87_15310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445802.1"
                     /translation="MVNKKTKSHRELIDTGKDKRYVRRNEKGQFDEVSDVGRSLAQDR
                     QQKAKHEVPPGQGDRGDQKRRS"
     gene            822..>1003
                     /locus_tag="VIJ87_15315"
     CDS             822..>1003
                     /locus_tag="VIJ87_15315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445803.1"
                     /translation="MASTTDSISIELRSDEDLSTGNGEGVPFSIGLLLDATEKERKNL
                     SLIEDCMRDLESALRQR"
BASE COUNT          255 a          221 c          250 g          277 t
ORIGIN      
        1 ctggatgcgc tcgaggtcac tcttggtgac ccgagctgcg tttagacttc gatagcgaaa
       61 tccgcgttcg gggttaccta ttctgcgtat cccggttgtt tgcaatcttt cgagattcgt
      121 catgtgagta agaattcatc aagagttaag tgccggggta caagagttgt ttgcagatca
      181 tgggaatctg atatccgtga actaggaagg tacgtttgag taagcatata aaagcaaatc
      241 aattcgaaat catctgcgcc tggtgtggcg cactcattag atctaatgct cgagacgtcg
      301 gcgagcgaat gtgtttgata tgtcatgcga ggttactcaa cgagtatttc cgcaaccaaa
      361 gaaaaagaag cgacgagaaa cgtgatgcat ctcgcgtcgc ttcgaaatga tgtgcaaaac
      421 gctcattacg atctgcgctt ctggtctcca cgatcgccct gaccgggtgg aacttcatgc
      481 ttagctttct gttgccgatc ttgggcaagt gaacgaccca cgtctgaaac ttcatcgaac
      541 tggcccttct catttcgtcg aacataccgc ttgtcttttc ccgtatcgat aagttcccga
      601 tgactctttg tcttcttatt aaccatttca acctcctgcg agtgtaagtt tcctatacag
      661 acctcatcct caagttgttt agatctcagt cacactcact aacgaatgtc ctatttgatc
      721 ttcaccgcaa cactgatgcc agcaatgtct taataagaaa atttggaggt gtaggaagcg
      781 ggcgcggcat ttgcaggacg tttgagaggg ggaaacaaat catggcgtca actactgatt
      841 caatctcgat cgaattgagg tcggatgagg atttatcgac gggtaacggt gaaggagtgc
      901 ctttctcgat tggcctatta ttggatgcaa ctgagaagga gcgaaagaat ttgagtctaa
      961 ttgaagactg catgagggac ttggaatctg cgctcaggca gcg
//
LOCUS       DATCGC010001605         1413 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_255579, whole genome shotgun sequence.
ACCESSION   DATCGC010001605 DATCGC010000000
VERSION     DATCGC010001605.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1413)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1413)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1413
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_255579"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..181)
                     /locus_tag="VIJ87_15320"
     CDS             complement(<1..181)
                     /locus_tag="VIJ87_15320"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEY5445804.1"
                     /translation="MEIHSILLPTDFSECGNYALSYAASLARTFRASIICLNVIEPIV
                     PTVGYSGMTEPLPIAD"
     gene            394..1338
                     /locus_tag="VIJ87_15325"
     CDS             394..1338
                     /locus_tag="VIJ87_15325"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEY5445805.1"
                     /translation="MGNSTLLIGMHVSGQTLQAALVDASGQIIQRREDTLSPENIIEQ
                     AAFVVRELSANRGEISALGFAIPGLVNRQTDVVIMSRDLPASVREGLHSELGRATGLR
                     VELENDANAAAYGEFKVGAGKESRDIFYMMIGNGIGGAIILDGKLWTGSSGFAGEVGH
                     ITIDAEGLECICGNTGCLETVASAPSIVRRARERLNRDSTSSLSRLGLTKDFTADDVA
                     HEANEGDDFALMMIERTGKYIGTGVANVINLLNIERIVLGGGVMDAGQLILNPIIQEA
                     KRRAFQPSFEATEIVAAKLGRDGITIGAAMLAHDAAAS"
BASE COUNT          355 a          356 c          369 g          333 t
ORIGIN      
        1 tatctgcaat aggcagcggc tctgtcatcc cggagtagcc aaccgtcgga acaataggct
       61 cgatgacgtt taagcagatg atcgaagccc tgaaagttcg cgccagcgaa gcagcatagg
      121 aaagagcata gttcccacac tcgctgaaat cggtgggtaa aagtattgag tgaatttcca
      181 taatggaaaa acgtacctgg ttttgtgctt aggtctttgc ctagttctcc ttagcgccaa
      241 gaaccgggac ggcaacccta caaagcacaa gatcaaagta ctaagctcga ctgtgcccga
      301 attctactct cgaaaacact cgtttgacag ccttagagcc ctcgactatg cttcgctcaa
      361 gcaagtctta cccagctaat cagacgattc ccaatgggaa attcaacact cttaatcggt
      421 atgcacgttt ccgggcagac gctccaagct gccctcgttg acgcttcggg tcagatcata
      481 caaagacgcg aggacacgct ttctccagaa aacatcatcg agcaggctgc ttttgttgtt
      541 cgtgaactgt ccgcgaatcg aggggaaatt tcagccttgg gctttgcgat tccgggtttg
      601 gtgaatcggc aaaccgacgt tgttattatg tcccgggacc ttccagcatc tgttcgagag
      661 ggtttgcatt cggagttggg gcgggcaaca ggactgcggg tggagcttga gaacgacgct
      721 aatgccgccg cttacggaga atttaaggtc ggagccggaa aggaaagtcg cgacatcttc
      781 tacatgatga ttggcaatgg aattggtggc gcgatcattc tagacggaaa actttggacg
      841 ggttcttccg ggttcgctgg agaagttggg catataacca tcgatgctga aggcctcgaa
      901 tgcatttgtg gaaataccgg ttgtcttgaa accgttgctt ccgctcccag tatcgttcga
      961 cgcgcccgcg aaagacttaa ccgcgactcg acgtcgtctc tgtcccgctt aggtttgacc
     1021 aaagacttca ctgcggacga tgtcgctcac gaggcaaatg aaggcgacga ttttgcgttg
     1081 atgatgatcg agcgaacagg caaatacata ggaaccggag tcgcgaacgt catcaacttg
     1141 ctgaacatcg aacgcatcgt acttggcgga ggagtaatgg acgcaggaca gttaatcctc
     1201 aatcccatta tccaggaagc taagcgccgc gccttccaac cgtcctttga agccaccgaa
     1261 atagttgccg ctaaacttgg tcgcgacggg atcactattg gcgcagcaat gcttgctcac
     1321 gacgctgcgg ctagttagtc cattctcaag agattcctca aattatttga ccagtcccgt
     1381 gatggcccaa tggatactca gcgtatcgca ttg
//
LOCUS       DATCGC010001606         1033 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_123446, whole genome shotgun sequence.
ACCESSION   DATCGC010001606 DATCGC010000000
VERSION     DATCGC010001606.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1033)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1033)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1033
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123446"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            351..839
                     /locus_tag="VIJ87_15330"
     CDS             351..839
                     /locus_tag="VIJ87_15330"
                     /inference="COORDINATES: protein motif:HMM:NF024803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEY5445806.1"
                     /translation="MSRPAVAIPEKLFFKIGEVCELAGVQAHVLRYWESEFTMLAPQK
                     NRAGQRVYRKRDVEMALRIKELLYEDMYTIAGAKKRLTNDLRGGGKLKVVGSEDESVE
                     ETPKLDFSDGESFPQAPASTFNRMPLPPRTAEERQGLKQLASELRALLGLLEKENQNK
                     AK"
     gene            894..970
                     /locus_tag="VIJ87_15335"
     tRNA            894..970
                     /locus_tag="VIJ87_15335"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:928..930,aa:Pro,seq:ggg)
BASE COUNT          254 a          254 c          280 g          245 t
ORIGIN      
        1 cccgacttga tcgagccgcg aagccaggcg aagaaccgtt ggcgaggttg tcactgtttc
       61 gaagaatcct cccgagtgtt tgcgtgggaa ggcggattat agccacggca ttgccgattt
      121 ccaattggcg tggaggattt cagatctcag gtcggagatc cttaaccgtt tacctttaag
      181 acaatctttt aagtgaggtt agctaagtgt aagtattgac acgtcaaaga ctgcgcgagt
      241 aacatgacgc ccgacgcagt agttgctggc caagtcacct acagtctttc caaacttccc
      301 agcgtaattc gacagccagc tccaacttac ccggcgtgtc cttaacaata atgagccgtc
      361 cagcagtggc catacctgag aagcttttct tcaagatcgg cgaggtttgt gaactcgccg
      421 gggtgcaagc gcacgttctg cgctactggg aatcggagtt tacgatgctc gcgccgcaga
      481 agaaccgcgc cggacagcgc gtctatcgca agcgtgacgt tgaaatggct ctcagaatca
      541 aggaattgtt gtacgaggac atgtacacaa tcgctggagc caagaagcgt ctaacaaacg
      601 acttgcgcgg cggtggaaaa ctcaaggttg ttggttccga agatgaatcg gttgaagaaa
      661 ctccaaagct tgatttttct gatggcgaaa gttttccaca ggcacccgct tcgacattca
      721 atcgtatgcc tctgcctccc agaacggctg aagaacgcca gggtttaaag caactcgcct
      781 ctgaactgcg cgctttgttg ggtctgctcg aaaaagaaaa ccaaaacaaa gcgaagtgag
      841 ttttagttag ctcgtttgac aattgctctt tagcacgata ctaagtcaag cgacgggacg
      901 tggcgcagcc tggtagcgcg cacccttggg gtgggtgagg ccccgagttc gaatctcggc
      961 gtcccgacca gatcattaaa acggtctttg gacttaggtc tttggtcttt ggagttttcc
     1021 aaagggcctt gga
//
LOCUS       DATCGC010001607         3159 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_255601, whole genome shotgun sequence.
ACCESSION   DATCGC010001607 DATCGC010000000
VERSION     DATCGC010001607.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3159)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3159)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3159
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_255601"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            215..1582
                     /locus_tag="VIJ87_15340"
     CDS             215..1582
                     /locus_tag="VIJ87_15340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445807.1"
                     /translation="MFACIHAPELSAELSLSSFAYSFSPLIEETRSNTVVLDVDGCEL
                     LFGSAYQLAREIAEHSKKSKTDGGLQTNGNVALAANPDAAIHAATYLKGVTFVAPGEE
                     LTCLGEFPLQVLDCSLVNVDEKRSAEIFETLRLWGVRTFHDFAELPITGVSERLGPEG
                     IQLQKLAAGKTERHLLLKQSPPVFASSIELEHAIAELEPLSFIFARLLNQVCASLNSY
                     ALATNELLVRMQLDNQSTHERHLTLPYPMRDHKVFLKLLLLDIEMHPPQSAVKSVSIH
                     CEPVKPRVLQNGLFTPLAPAPDKLELTLARLGKLVGEKNIGSPVLLNTHRPDAFSMKR
                     FVLNTKAPAKSRKVSTNPKFEIRNPTSVLGFRMFRPPLRAVVEIASGWPVQVSAWGKQ
                     RSVYGKVVSLAGPWRSTGDWWRNDSWDRDEWDVALESGKEQQALYRIYRELKSGNWFV
                     EGNYD"
     gene            1589..>3159
                     /locus_tag="VIJ87_15345"
     CDS             1589..>3159
                     /locus_tag="VIJ87_15345"
                     /inference="COORDINATES: protein motif:HMM:NF019353.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HEY5445808.1"
                     /translation="MSDYIELHARSAFSFLEGGSVPEELIAAGMELNMPAMALLDRDG
                     VYGSPRFHMAGKKNGIKAHIGAEISVQSPKSKVQSPKSIYSIPVLAYNRLGYQNLCRL
                     ITLMKLRVPKHAKPGECVVTPEELAAHAQGLICLTGGFDGPLAKSIESHDARNTKELQ
                     VTTDWLVDIFGRRNVYAELQRHFDREEEARNQIVVEVARSNHLPLLATNGVCHAVASR
                     REVSDVFTCIRNHVRLETAGRLLARNSERYLKSAATMEKLFADLPEAIANTTELSSRL
                     EFTLEDLGYEFPKYPVPPGETMTSFLRERTEEGARLRYTGERGSPSYEKARPQVEREL
                     ALIEKLKLEGYFLIVWDIVQFCRREGILIQGRGSAANSAVCYSLGITAVDPIGMELLF
                     ERFLSEERGEWPDIDLDLPSGDQREKTIQYVYERYGKLGAAMTANVITYRGRSAAREV
                     GKVLDFDDDTLSRLSGLVHKWEWKDPKDSTERQFRDAGLDLRNPRIKKFFQLYQMVQD
                     LPRHLGQHSGGMVIC"
BASE COUNT          822 a          692 c          798 g          847 t
ORIGIN      
        1 ctaaagccac ggtgagaatg agaggaagtt cgcgaggaca ctacgcctgc tcaaaatgaa
       61 ccagtaccga agcggccgag ccgcaattaa atgattgcca acgaaatagg aactcacgag
      121 tgtctttgaa agatattttc ctagcaaaat cttagcttga caattttcgt aaattttcag
      181 taatcttcgc ccattcttcg aatggcgaat gattatgttt gcttgtatcc atgctccgga
      241 gctatcagca gaactgtctt tatcgagctt tgcctatagc ttttcaccgc tgattgaaga
      301 aaccagatcc aatacagttg ttctcgatgt tgatggttgt gaactgttat ttggttctgc
      361 ttaccaactt gcacgggaaa tcgcagagca ttctaagaag tccaagactg atggggggct
      421 tcagacgaat gggaatgttg ctctagccgc aaatcccgat gcagcaattc atgcagctac
      481 ttatttgaaa ggcgttacct ttgtcgcgcc tggggaggag ttgacctgtc ttggtgaatt
      541 cccattacaa gtcctggact gttcattagt taatgtcgat gagaaacgaa gtgctgagat
      601 cttcgagact ctaagacttt ggggtgttcg aactttccat gattttgcag aactccctat
      661 tacgggtgtc tctgagcgtt taggacctga agggattcaa cttcaaaaac ttgctgcggg
      721 taaaaccgaa cgacatctgt tactcaaaca atctcctcct gtctttgcga gttcaataga
      781 actcgaacat gccattgccg aacttgaacc actctcattt atttttgccc gtctcttgaa
      841 tcaggtttgt gcaagcctca attcgtacgc attggcaacg aatgaattgc tggtacgaat
      901 gcagctcgac aaccaatcta cacacgaacg acatttaacg ctgccctacc caatgcggga
      961 tcacaaagtt tttttgaagc tgttgttgct ggatatcgaa atgcatccgc ctcagtcagc
     1021 ggttaagtct gtttcgattc attgtgaacc cgtcaaaccg cgcgttttgc aaaacggcct
     1081 gttcactcct ttagccccag cgccggacaa actcgaactc accctggcca gactcggcaa
     1141 actagtgggt gaaaaaaaca taggctcacc agtgcttctc aatactcatc gtcccgatgc
     1201 gttttccatg aagcgatttg ttttaaatac aaaggcccca gccaaaagtc gaaaggtttc
     1261 aacaaatccg aaattcgaaa tccgaaatcc gacttccgtg cttggttttc gaatgtttcg
     1321 accgccatta cgtgccgtcg tcgagatagc tagtggctgg ccagtgcaag tgagtgcctg
     1381 gggaaagcag cgaagtgttt acggaaaagt agttagtttg gcagggccat ggagatcgac
     1441 tggtgattgg tggcgcaatg atagttggga tcgagatgaa tgggatgtcg cgctggagag
     1501 cgggaaagag caacaagctc tttatcgaat ttatcgggaa ctaaagagtg gaaattggtt
     1561 tgttgagggt aattacgatt gaactgttat gagcgattac attgaactac atgcacgttc
     1621 ggcttttagt tttctggaag gaggttctgt tcccgaagaa ttgattgctg ccggtatgga
     1681 gttgaacatg cccgcgatgg ctttgttgga tcgagatggt gtttacggat caccacggtt
     1741 tcacatggcc ggaaagaaga acgggatcaa ggcgcatatc ggcgcggaaa taagtgttca
     1801 aagtccaaag tccaaggtcc aaagtccaaa gtccatctat tcaattccag tgttggctta
     1861 taaccgcctt ggttaccaaa atctttgtcg acttatcacg ttgatgaagt tgcgtgtgcc
     1921 gaagcatgct aagcctggtg aatgtgtcgt aacaccagaa gagttagctg cacatgccca
     1981 aggtttgatt tgtttgacag gcggattcga tggccctctg gctaagtcga tcgagagcca
     2041 tgacgcgcga aatacaaaag agcttcaagt cacaacggac tggttagtgg atatttttgg
     2101 tcggcgtaat gtttatgcag aactgcaacg acatttcgat cgcgaagaag aagcccgaaa
     2161 tcaaatcgtt gttgaagtcg ccagaagcaa tcatcttcct ctgttggcca cgaatggagt
     2221 ttgtcatgcc gttgcctccc gtcgtgaagt ttcagacgtt tttacctgca taagaaatca
     2281 tgtacgactg gagacagccg gacgtttgct tgctcgtaat tcagagcgat atctgaaatc
     2341 tgccgcgacg atggagaagc tctttgcgga tctgccggaa gctatagcta acacgacaga
     2401 gctctcatcg cgtttggaat ttaccctcga agacctcggt tatgaatttc cgaagtatcc
     2461 ggtgcctcca ggcgaaacta tgacttcgtt tttacgcgaa cgcacagaag aaggtgcacg
     2521 tctgcgttat acaggtgagc gaggttctcc gtcttatgaa aaggcccgcc ctcaagttga
     2581 acgcgaattg gcgttgatcg aaaaactcaa actcgaaggc tactttctaa ttgtttggga
     2641 catcgttcaa ttttgtcgca gggaaggaat tctgatccag ggacgtggct cggcagccaa
     2701 tagcgccgtt tgttattcac ttgggataac ggctgtggat cctattggaa tggagttgtt
     2761 gtttgaacga tttctttccg aagaaagagg cgagtggccc gatatcgatt tggatctccc
     2821 gagtggggat caaagagaaa agacgatcca gtatgtttac gaacgctacg gaaaactagg
     2881 cgccgcgatg accgcgaatg taattaccta tcgaggtcgc tcagctgcac gcgaggttgg
     2941 aaaggtcctt gattttgatg acgacacgct atccaggctt tccgggctgg tgcacaagtg
     3001 ggaatggaaa gatccgaaag attctaccga gcgtcagttt cgtgatgctg gattggatct
     3061 tcgcaacccg cggattaaga agttctttca gctttatcaa atggttcaag atctgccacg
     3121 gcatttaggt caacattcag gtggcatggt gatttgtca
//
LOCUS       DATCGC010001608         1600 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_421350, whole genome shotgun sequence.
ACCESSION   DATCGC010001608 DATCGC010000000
VERSION     DATCGC010001608.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1600)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1600)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1600
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_421350"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            450..>1600
                     /locus_tag="VIJ87_15350"
     CDS             450..>1600
                     /locus_tag="VIJ87_15350"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HEY5445809.1"
                     /translation="MSPMLTKGLSILVLLVVSICAITASAQVDATSATMKGTITDQQG
                     ALVLGATVTATSVDKGLKRSATTSSEGSYQIALLPPGAYKIEIEAQGFAKVFNDSVQL
                     SVGQNLVYDVQLNASSVTAQVAITGDVPLIEVERTQQANTISNQQVENLPNVGRTFQN
                     YVYTLPGVVSSAAPRVQLASRITAFQSSGFSIGGSNGRNNLITVDGGENELGSGTTRY
                     DVSTEAIQEFQVNRNSFSAEFGFTAGTAVNIVTKSGSNKFHGSGFIFYRSDATSARNA
                     FDTINPGQKSSDRQYFPGFTLGGPIVQNKLFFFTNYERTATDAARFRTYTNDPLTRPN
                     ALQLQTLATLDASADANVRRISTNLRAALTTTAASYPKIFQLLSDSQGV"
BASE COUNT          388 a          447 c          392 g          373 t
ORIGIN      
        1 tttccgcacg ggtggcggca aagccgcagg cgagagatct agagagacga tccaacgaga
       61 atcctatggg acagcttaat cttgatgctt gaccttattt cctcagggtg ctattttacc
      121 gaccgttcgg taggtatccc catttgcatt aatacttcca tcgctggcga ccaacatttg
      181 gtgcctttca tattggaacg atagtcggaa gcacgactgg ggctttgtgc ccttcaactt
      241 gaagtgccag ctccttctct cttctgactt caagcggccc tctcgcaagc cgtcgttgaa
      301 gctcgacaag ttccatacaa gctggcggtg atctcatttg gcattctttc acgtgtccat
      361 gggcgtcgga tcaaaggggt tcgttctact cctgttataa tttgttcgct tgccagacta
      421 agtcccaaaa gagagttcgc ataaaggaga tgtcgccaat gcttaccaaa ggcttatcaa
      481 tcctggttct ccttgtcgtt tcaatctgcg caatcaccgc ttccgcacaa gttgacgcaa
      541 caagcgctac gatgaaaggc acaatcactg accaacaagg tgcactggtc ttgggtgcta
      601 cggtcaccgc aaccagcgtc gacaagggat tgaaaaggag cgctacaacc agttccgaag
      661 gcagctatca gattgcactg ctcccgcccg gcgcctacaa aatcgagatc gaagcgcagg
      721 gctttgcgaa agtattcaac gacagcgtgc aactgtcagt cggccagaac ctggtctatg
      781 acgttcaatt gaatgccagc agcgtgacag cccaggtggc gatcacaggc gacgtgcctc
      841 tgattgaggt agagcgaaca caacaggcca acacgatctc aaatcagcag gtcgagaact
      901 taccgaacgt tggtcgcacc tttcaaaact atgtatatac actgccggga gtggtgagtt
      961 cggcggcgcc ccgggttcaa cttgcaagcc gtatcaccgc cttccaaagt tccggattct
     1021 cgattggcgg cagtaacggt cgtaacaatc taatcaccgt agatggcggc gaaaatgaat
     1081 tggggtcagg cacaacccgt tacgacgttt ccacggaagc cattcaagag ttccaagtga
     1141 atcgtaattc gttctcagcc gagtttggct tcactgccgg gacggcggtg aacattgtta
     1201 ccaagagcgg ttccaacaag tttcatggta gtgggttcat cttctaccga tccgacgcta
     1261 cttccgctcg caacgccttc gatacgatca atcccggaca aaaatcgtct gaccggcaat
     1321 actttcccgg cttcactctg ggcggcccga tcgtccagaa caaacttttc ttctttacga
     1381 actacgaacg caccgcaacc gacgccgcgc gttttcgtac ctacacgaac gacccgctga
     1441 cgcggcctaa cgcgctacag ctacaaacgc tcgcgacgct tgatgcctct gctgatgcaa
     1501 acgtccgcag aatttcaacg aatcttcggg ctgcgcttac gacaacggca gcgagttatc
     1561 cgaagatctt ccaactctta agcgacagtc agggtgtttt
//
LOCUS       DATCGC010001609         1559 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_357692, whole genome shotgun sequence.
ACCESSION   DATCGC010001609 DATCGC010000000
VERSION     DATCGC010001609.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1559
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_357692"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..905)
                     /locus_tag="VIJ87_15355"
     CDS             complement(<1..905)
                     /locus_tag="VIJ87_15355"
                     /inference="COORDINATES: protein motif:HMM:NF019845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HEY5445810.1"
                     /translation="MPVVAVIPKPNSPVEVREVPAPDLELNSALLEVELSEVCGTDVH
                     LQRGLLQGVPYPLVCGHVSIGKLQKIRGELLDVNGQRFNEGDRVTFLDVHRTCNACWY
                     CLVAKASTRCPHRKVYGITYGLDDGLCGGWASHVYLKPGTRCISVDTDPETFMAGGCA
                     LPTALHAVERAEVRIGDIVLVLGSGPVGINTILMARMSGALRVLCIGAPQSRLDAALE
                     AGAASVLNIETNDYKARLDWVMEQTSGRGADVTIEVAGVAEAVVQSMKFTRDAGRVVV
                     VGQYTDHGPIEFNPHIDLNKKHLDVR"
     gene            1190..>1559
                     /locus_tag="VIJ87_15360"
     CDS             1190..>1559
                     /locus_tag="VIJ87_15360"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012478.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEY5445811.1"
                     /translation="MPQSRHRKIDKRKKQRSATRAAAASRGPSITKSKNFQIGAMILV
                     VAVIIGGLGYYWATKPKAAGPFITTASGLQYYDEKVGDGPSPQAGQSVTVNYRGVTQS
                     TGKEFDSSFRRGVPATFTVGT"
BASE COUNT          389 a          424 c          390 g          356 t
ORIGIN      
        1 cgaacgtcca aatgtttttt gttcagatca atgtgtggat tgaactcgat cggaccgtga
       61 tcagtatact ggccaacaac aactactctt cctgcgtcac gcgtaaactt cattgattgc
      121 actaccgcct cagccacacc ggccacttcg atcgttacat cagctccacg acccgacgtt
      181 tgttccatga cccaatccag acgcgccttg taatcgttcg tctcgatgtt tagcaccgag
      241 gcagctcctg cttcaagcgc agcgtccagg cgcgactgtg gagcgcctat gcaaagcact
      301 cgcaaagccc cgctcattcg cgccatgaga atcgtgttta tcccgactgg tccggaaccg
      361 agtacgagca caatgtcgcc aatcctaact tctgcccgtt cgactgcgtg taacgctgtc
      421 ggcaaagcgc aacccccggc cataaaagtt tccgggtcag tatcaacact gatgcagcga
      481 gtgccaggct tcagataaac gtgactggcc cagccgccgc aaagtccatc atcgagtcca
      541 taagtgatgc cgtagacttt tcggtgagga catcgtgtgc ttgcctttgc taccaggcaa
      601 taccagcagg cattacatgt tcgatgaacg tcgagaaaag taacgcgatc gccttcgttg
      661 aaacgttgac cgttaacatc caataactca ccgcggatct tctgtagttt gccgatggag
      721 acgtgaccgc agaccagcgg atacggaaca ccctgaagga gtccgcgctg aaggtggacg
      781 tccgttccgc acacttccga cagttcgact tcgaggagcg ccgaattcag ttcgagatcc
      841 ggcgctggca cctcgcgtac ttcaacaggt gaattgggtt taggaattac agcaacgact
      901 ggcatgggag gaagaatatc aaatctcaga tctcagatct caaatgtccg ataaacttta
      961 gtttgtcgtt atcttctgcg gatcgctagt gcgagcttca ttctgggacc gagtgagccg
     1021 ccagctcaga acgacaaact agagtttatc ggacatttga gatctgaaat ctgagatctt
     1081 ccgcccaagt ccaaagcctt ctctttcggg caacttgaat actgcgatca ttctcggtat
     1141 aaggactgtc ccatttctca ataactcttc ggaaggtgga tcgaattcag tgccccagag
     1201 ccgacaccgc aagattgata aaaggaagaa gcagcgtagc gctacgcgtg cagcagccgc
     1261 gagtcgtggc ccctcaataa ctaaaagcaa gaattttcag atcggggcaa tgattttggt
     1321 ggtggccgtc attattggtg gacttggcta ctactgggcc acgaagccga aagctgccgg
     1381 gccgttcatc accacagcct caggcttaca atattatgat gagaaagttg gagacggtcc
     1441 cagcccgcag gcgggtcaaa gcgtaactgt caattacagg ggtgtaactc aaagcaccgg
     1501 taaagagttc gacagttcat tcagaagagg tgtgcccgct accttcacgg tcggcactg
//
LOCUS       DATCGC010001610         1110 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_489330, whole genome shotgun sequence.
ACCESSION   DATCGC010001610 DATCGC010000000
VERSION     DATCGC010001610.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1110
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_489330"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1110)
                     /locus_tag="VIJ87_15365"
     CDS             complement(<1..>1110)
                     /locus_tag="VIJ87_15365"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY5445812.1"
                     /translation="GEGGPITVGGKNKSFFFLSYEGLRENSTNNSVSYVETPQFRQNI
                     INARPGGVSARILSDSLVQPRIGGTIQSSCVDVNGLCQVVGTGLDVGSPIGGLGQYVS
                     LGNIAGGGLDGIPDIQKVIIAAPAINRPNQYNARFDFTPNAKDQIAFSTYLTRNFSIG
                     SDSGAGARPQADITTTPHNTALTFLYNRIISSTLLNEARFNFTQFSFNEVASSRETNF
                     GIPRVEIESLLKNGRIRFGANQAETTPGIFSEKTFEFRDVVSKVMGNHAWKFGGEYRK
                     ELNDDNLNGQSRPLYTFGGLFNFANDAPLFYQINADPRTGGVAQAQRHFRSGGYGAFI
                     QDDWKVRSNLTLNLGLRYEYFNVLKEKNNQVANFVF"
BASE COUNT          258 a          286 c          282 g          284 t
ORIGIN      
        1 aaacacaaaa tttgcgacct ggttgttctt ctcctttagg acattgaagt actcataacg
       61 aagtccgagg ttaagggtca ggtttgatcg caccttccaa tcgtcctgga tgaaagcgcc
      121 atacccacca gagcggaaat ggcgttgcgc ctgcgcaacc ccaccagttc tcggatcggc
      181 gttgatctgg tagaacagcg gagcatcgtt agcgaagtta aagagtcctc caaacgtata
      241 taacgggcgc gattggccgt ttaggttgtc gtcgttgagt tctttccgat actcaccacc
      301 aaacttccac gcgtgatttc ccattacctt gctcaccaca tcgcggaatt caaatgtctt
      361 ttccgaaaag atccccggag tggtttccgc ctggtttgcg ccaaagcgaa tgcgaccgtt
      421 ctttagaaga ctttcgattt caactcgcgg gataccaaag tttgtttccc tggacgaagc
      481 gacttcgttg aaggaaaact gggtgaagtt gaaacgcgct tcgttcagga gtgtcgacga
      541 tattattcga ttgtagagaa acgttagcgc agtgttgtgt ggggtggtcg ttatatcggc
      601 ctgtggacga gcgcccgcgc cgctgtcact gccgatcgaa aaatttctcg tcaggtaagt
      661 actaaacgca atttgatctt tcgcgtttgg tgtgaagtcg aaacgggcgt tgtactggtt
      721 cggcctgttg attgccggcg cggcaatgat gaccttctgt atgtccggaa tgccatcgag
      781 cccgccaccc gcaatatttc ccaggctcac atattgaccc aaccccccaa tcggtgatcc
      841 gacgtcgaga cctgtgccaa caacctggca aagaccattc acatcaacac acgacgattg
      901 tattgttccg ccaatgcgtg gttgaacaag cgagtctgaa agaatgcgcg cgctcacgcc
      961 accgggtcga gcattgatga tgttttgcct gaattgcggt gtttcgacgt acgacaccga
     1021 gttattggtc gaattctcgc gcagaccttc gtaggaaagg aagaagaacg atttgttctt
     1081 tccaccaact gttatcgggc cgccttctcc
//
LOCUS       DATCGC010001611         1022 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_489347, whole genome shotgun sequence.
ACCESSION   DATCGC010001611 DATCGC010000000
VERSION     DATCGC010001611.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1022)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1022)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1022
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_489347"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..915
                     /locus_tag="VIJ87_15370"
     CDS             <1..915
                     /locus_tag="VIJ87_15370"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HEY5445813.1"
                     /translation="QPYGRVGEIFATAMYPKGHPYSWPVIGSMADLSAASEEDVKAFF
                     RIYYAPNNTTIAIVGDFDPVQAKAWVKKYFGDLPKGTPVQRPSVALAKLDASKRLVYE
                     DSVQVPRLYIQWPSVGVKNEDDVALSVMSSILSGSRTARLTKALVYDSQFASQAFAFQ
                     SGNEDVGEFQVIAVPRPGHTLTEIENAVDQVMAKFINEGPTAEELQRAKAGLELGFLR
                     GLESNLGKADQLLDGAVFHGDAGYYSSDYQKTLAVTAADVKRVAAKYLAGNRIVLSVV
                     PKGKRDEASKSTESETVSLLLSGAKGER"
BASE COUNT          257 a          257 c          281 g          227 t
ORIGIN      
        1 caaccctacg gtcgcgtcgg tgagattttc gcaacggcga tgtaccccaa aggtcatccg
       61 tactcctggc cagtgatcgg atcgatggct gacttgagtg cggcctctga agaagatgtc
      121 aaagcgttct ttcgcattta ctacgcacct aacaacacga ccatcgcaat cgtcggtgat
      181 tttgatcccg ttcaggcaaa agcctgggtc aagaaatact ttggcgactt gccaaaggga
      241 acgccggtac aaagaccaag tgttgcgctc gccaaactcg acgccagcaa acgtctggtt
      301 tacgaagaca gcgtgcaggt tccgcgtctc tacattcaat ggccgtcggt tggtgtgaag
      361 aatgaagacg acgtcgcgct ttccgtgatg agttcaatcc tttcgggatc acgaactgcc
      421 cgacttacaa aggcattggt gtacgactcg cagtttgctt cacaagcgtt cgcattccaa
      481 agtggtaatg aagatgtcgg cgagtttcaa gtaatcgctg tgccgcgacc gggccacacg
      541 cttacagaga tcgagaatgc ggtcgatcag gttatggcaa agttcatcaa cgaaggcccg
      601 acggcggagg aactacaacg cgcgaaggcc ggtctcgagc tgggtttcct tcgtggtctc
      661 gaatcaaacc taggcaaagc ggatcagtta cttgatggag cggtcttcca tggtgacgcg
      721 ggttattaca gttcggacta ccagaagacg ttagcggtta ccgctgccga cgttaagcga
      781 gtcgctgcca aatatctcgc cggaaatcgc atcgtgttga gtgtagtgcc aaaagggaag
      841 agagatgagg cttccaagtc gacagagagt gaaaccgtca gcctgttgtt gagcggcgcc
      901 aaaggagaaa gataatgaaa cgaaacaatc cgattctagc gctgttcgca gttgcggtta
      961 tctcgcttgc gagtgttggt tcactcgcgc aacaaacact cgatcgaacc aagattccac
     1021 ct
//
LOCUS       DATCGC010001612         1266 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_357884, whole genome shotgun sequence.
ACCESSION   DATCGC010001612 DATCGC010000000
VERSION     DATCGC010001612.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1266)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1266)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1266
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_357884"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1266
                     /locus_tag="VIJ87_15375"
     CDS             <1..>1266
                     /locus_tag="VIJ87_15375"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HEY5445814.1"
                     /translation="AITGTALDENHAPVAGATVNSTGSQSAVTSTDAQGSFRFPGLPT
                     NGNYNVTLSKRHYTFLPATQNITDVTDDVSLTFDARLTLFTITGTALDENHAPLAGAT
                     VNLTGSQSAATTTDSQGSFRFPGLPTNGNYNVALSKRHYTFLPATQNITDVTDDVSLT
                     FDARLTLFAITGIALDENHAPLAGATVNLTGSKSVVTTTGAQGSFRFPGLPTNGNYTV
                     ALSKSHYTFLPATQNVTDVTEDMTVAFDARLNRHAIAGRIAGVNGASISGILVRLDQS
                     PEVTQITDVNGFYSFTQVPAGQNYTVTPEPNTDFVFAPVTTTFSDLSGDQTANFMGWL
                     RPEITTEPGSNVALALDSVTFIAQPFSPFNSLDFSNDGFLRITIFAKKVEPSVTLSQV
                     SVLAEDNLGQFHPLQIEGMGNVPGQSWLK"
BASE COUNT          314 a          356 c          280 g          316 t
ORIGIN      
        1 cgcgattact ggaactgcgc ttgacgaaaa tcacgctcca gttgccggcg ccaccgttaa
       61 ctcgactggc tcacaatcag cggtcacatc aaccgacgcg caaggtagtt ttcgattccc
      121 cggcttaccg acaaatggca actacaatgt tacgttgagc aagcgtcatt acactttctt
      181 gccagccact caaaacatca ctgatgtaac cgacgacgtg tcgcttactt ttgacgctcg
      241 gctaacactt ttcacgatta ctggaactgc gcttgacgaa aatcacgccc cacttgccgg
      301 cgccaccgta aacttgactg gctctcaatc agcggccaca accaccgact cgcaaggtag
      361 ttttcgattc cctggcttac cgacaaatgg caattacaat gttgcgctga gcaagcgtca
      421 ttacactttt ttgccagcca ctcaaaacat caccgatgta accgacgacg tgtcgcttac
      481 ttttgacgct cgcctaacac ttttcgccat tactggaatt gcgcttgacg aaaatcacgc
      541 tccacttgcc ggtgccaccg tgaacttgac tggctctaaa tcagtggtca caacgaccgg
      601 cgcgcaaggt agttttcgat tccctggctt accgacaaat ggcaattaca ctgttgcgct
      661 gagcaagagt cattacactt tcttgccagc cactcaaaac gtcaccgatg taaccgagga
      721 catgacggtt gcttttgacg ctcgcctgaa ccgtcatgca atcgcgggcc gaatcgccgg
      781 ggtaaacggg gccagtatta gtggaatatt ggttcgtttg gatcaatccc cggaagttac
      841 ccagataacc gacgtcaatg gtttctattc gtttacccaa gtcccggcgg ggcagaacta
      901 cacggtgacc ccggagccca acacagattt cgtgttcgct cccgtgacca ccacttttag
      961 cgacttatcc ggtgatcaaa cggccaattt catgggttgg ctccgacctg aaataacaac
     1021 tgaaccagga tccaacgttg cactggcgct tgattcagta actttcattg cgcagccttt
     1081 ttcacctttt aattcgcttg atttcagcaa tgatggattt cttcgaataa ctatcttcgc
     1141 caagaaagtc gagccttcgg tcacgttgtc acaggtctcg gtattggctg aagataacct
     1201 gggacaattc catccacttc aaatcgaagg tatgggaaat gttccagggc aaagttggtt
     1261 gaaaca
//
LOCUS       DATCGC010001613         1026 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_90701, whole genome shotgun sequence.
ACCESSION   DATCGC010001613 DATCGC010000000
VERSION     DATCGC010001613.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1026)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1026
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90701"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..747)
                     /locus_tag="VIJ87_15380"
     CDS             complement(<1..747)
                     /locus_tag="VIJ87_15380"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HEY5445815.1"
                     /translation="MDVNQLEVLIAVAKEQSFSRAAQSLHRTQPAVSQAIRRLENELG
                     ESLFDRSSKDGTLTAAGKVLFDFAEQMLNLRHGAHRAIKELRDLHHGKLALSANEYTV
                     MYLLPVLSVFRVRHPHIKVEVKRSLASRIASEVLGRGVEIGVVSFKPTDQAIASIPVV
                     MDELALIVAPKHPLADHKVVSVRELGAESFIAHNVASPYRERVVRTFEKYKTPLNISM
                     EMPTLESIKRLVEQEMGVALVPRLTAQIEIE"
BASE COUNT          241 a          284 c          252 g          249 t
ORIGIN      
        1 ctcgatctcg atctgtgctg tcaaacgcgg caccaatgca actcccattt cctgttccac
       61 cagtctcttg atcgattcga gcgtcggcat ttccatcgaa atattgagcg gtgttttgta
      121 cttctcaaat gtcctcacca ctcgttcacg gtaaggtgac gcaacgttgt gggcgataaa
      181 cgactccgca ccgagttcac gcacggacac aactttatga tccgctagcg gatgctttgg
      241 ggcgacgatt agcgccagtt catccatcac gacgggaatg gaagcaatgg cctgatccgt
      301 aggtttgaat gagaccacgc cgatctcaac ccctcgtccc aaaacctccg aagcgatccg
      361 gctcgccaaa ctacgcttca cttcgacctt gatatgggga tgacgcacgc gaaaaacaga
      421 aagcacaggc aacaggtaca tcacggtgta ttcattggcg ctgagggcca atttcccgtg
      481 atgcaggtcc ctgagttctt ttattgcgcg gtgtgcacca tgacggaggt tgagcatctg
      541 ctcggcgaag tcgaacagca ccttgcccgc cgctgtaagc gttccgtctt ttgaagacct
      601 gtcaaacaaa gactcgccca actcattctc caggcgccta attgcctgac tgactgcggg
      661 ttgagtgcga tgcaaagact gggcagcccg cgaaaaactc tgctctttgg ccaccgcaat
      721 gagcacctct agctggttga cgtccaatgc ccctccacgt ccaacgttat ccgataaaaa
      781 gcgctggtta tgttatcaca gccgcttatc tttatataaa gattataact ttgacttgga
      841 ggcccttggt cttttagcat ttggcttggc ttgcccaatc actggaggat ccccatgtca
      901 caagagagag tcacagtttt cgatacaacg ttgcgcgacg gcgagcagtc acccggctgt
      961 tcgatgaacc tcagcgagaa agttcggatg gctgtgaagc ttcaggaact tggcgttgac
     1021 ataatt
//
LOCUS       DATCGC010001614         2102 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_388579, whole genome shotgun sequence.
ACCESSION   DATCGC010001614 DATCGC010000000
VERSION     DATCGC010001614.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2102)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2102)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2102
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_388579"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..608
                     /locus_tag="VIJ87_15385"
     CDS             <1..608
                     /locus_tag="VIJ87_15385"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY5445816.1"
                     /translation="ASAPGAVLTLGRSGVQTLVDVRQPSGWRRLRDVLLADQSSDINR
                     LALAQLSMDLSGAHSDCRYFFEILFSLPSGIGTVRSLARYLGVIPSTLMSRFFRARLP
                     APKRYLAMTRLIRAAQLFENPGLSVANVANRLDYSSPQSFGRHVRGLIHLTAVEFRQK
                     YDGEGMLQRFREDLIIPYLPRLRNFAPLSAALIRPAERSAR"
     gene            complement(639..1193)
                     /gene="pyrE"
                     /locus_tag="VIJ87_15390"
     CDS             complement(639..1193)
                     /gene="pyrE"
                     /locus_tag="VIJ87_15390"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR00336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004588 - orotate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HEY5445817.1"
                     /translation="MASLSDLQQLLAERSAKRGKFTLSSGRESSLYIDARLTTMSPEG
                     LILIGELGLRALEQSGWDVQSVGGLTLGADPVAYAIAYASGSSPRPIRAFTVRKEPKS
                     HGTAQLIEGPFMQGDRVAIVEDVITTGSSALRAASAISANGGVIAGVLAVVDRNEGGR
                     ESLQEQGLPVIALTTAADIVARLS"
     gene            1285..>2102
                     /locus_tag="VIJ87_15395"
     CDS             1285..>2102
                     /locus_tag="VIJ87_15395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445818.1"
                     /translation="MPSPVIQARLAPVALLIALAFVVVGFLRVDREMTQAERDRAALT
                     ASETATLVEVFLLRQVTRLQSIEHAAETLIPDSLALNRAQGSSEAVSIFNNGWFDGLW
                     VVVPSSRGQTVTQLYGQPSKLTVDSTAIRQLVESHSSLGPKAVVTRQKGETLLWLVQS
                     IGGRSHSSITGLVSLDSLTYLLHQQRYSGSVGITVTARSDTILFVPDSQPNNHRRSVE
                     RTVVTPFGEEWLVTTTYTPAGRGVRIALWVVGLGAIVGLGIGLLLERREASRIA"
BASE COUNT          458 a          570 c          555 g          519 t
ORIGIN      
        1 aggccagtgc accaggcgcc gttctaacgt taggcagaag tggagtgcag acgcttgtag
       61 acgtccgaca accctccggc tggcgtcgcc tgcgtgatgt cctactcgca gatcaatcaa
      121 gcgatataaa tcgccttgca ctcgctcaac tttcaatgga cctcagtggc gctcattctg
      181 actgccgcta cttctttgag attctgttca gtttaccgag cggtattggg acagttcgtt
      241 ccttggctcg gtacctcggt gttatcccga gcactttgat gagccgcttc ttcagagcca
      301 ggttaccagc accaaagcgt tatctcgcaa tgactcgact cattcgggca gcacagctct
      361 tcgagaatcc cggattgtca gttgctaacg tcgctaaccg gcttgactat tcatccccgc
      421 aaagctttgg tcggcacgtt cgagggctta tccatctgac cgcggttgaa ttccgccaga
      481 agtacgatgg cgaaggaatg cttcagcgat ttcgcgaaga tttgattatt ccgtacctcc
      541 ctcgtcttag gaactttgca ccgctttcag cagcgttgat acgtccggca gagcgctcag
      601 cgagataatg ggcagcctca gttgtgtaaa cccaccgact atgacagccg cgcaacgatg
      661 tcagctgctg ttgtcagcgc aatgacgggg agaccttgtt cttgaagtga ttcccttcct
      721 ccttcgtttc ggtcaacaac tgctaacaca ccggcaataa ctccgccatt tgccgagata
      781 gcacttgctg cgcgaagtgc tgatgaacct gttgtgatga cgtcttctac gattgcaacg
      841 cggtcacctt gcataaacgg accttcaatc agttgcgcag taccatggga cttgggctcc
      901 ttgcggacgg tgaaagcacg aatgggccga ggagatgagc cactcgcata cgcgatcgca
      961 tacgcaactg gatcagcacc gagcgtcaga ccaccgacgg actgaacgtc ccatccactc
     1021 tgttcgagtg ctcgtagtcc aagttcccca atcaggataa gaccttctgg gctcattgtc
     1081 gtgagcctcg cgtcgatgta taaacttgac tcacggccgg atgacagcgt gaactttcca
     1141 cgctttgcag agcgctcggc gagcagttgc tgtaagtcgc taagagaagc catgacgtgt
     1201 gcgggctatg ggtcttgatg atgagaccat caataacgaa gggtcttgct tcaccatacc
     1261 tagtgagcct tctgcactag tctgatgcct tccccggtaa tacaggctcg tcttgctcct
     1321 gtcgcattgc tcatcgcgct ggcattcgtg gttgttgggt tcctgcgtgt cgaccgcgag
     1381 atgacacaag ctgaacgaga ccgtgcggcg ttgactgcat cggaaactgc aacgctcgtt
     1441 gaagttttct tgctacgcca ggtgacgaga ctgcaatcaa ttgagcatgc tgccgaaaca
     1501 ttgataccag actctcttgc actcaaccgg gcgcaaggta gttccgaagc ggtgtcgatt
     1561 tttaataacg ggtggttcga tgggctgtgg gtcgttgttc cgagttcccg cggacagacc
     1621 gtaacacagc tctatggaca accctctaag ctcaccgttg actcgaccgc tattaggcaa
     1681 ttggtggaga gccatagcag tctaggacca aaagctgttg taacgcgcca gaaaggagag
     1741 acccttttgt ggctcgttca atcaatcggc ggccgatctc attcatcgat tacagggtta
     1801 gtttcgctgg attcgctgac ctatttgctg caccaacaga gatactctgg ttcagtagga
     1861 ataactgtta ctgcacgctc ggatacgatc ctttttgtcc ctgatagcca gcctaacaat
     1921 caccgccgga gtgtcgagcg gacggttgta actccattcg gcgaagaatg gcttgtgaca
     1981 acaacctaca ctccagctgg gcgtggagtg cgaattgccc tctgggtagt cggacttggt
     2041 gccattgtcg gcttaggtat cggattactg cttgagcgcc gcgaagcaag ccgtattgct
     2101 ga
//
LOCUS       DATCGC010001615         1177 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_222981, whole genome shotgun sequence.
ACCESSION   DATCGC010001615 DATCGC010000000
VERSION     DATCGC010001615.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1177)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1177)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1177
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222981"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1177
                     /locus_tag="VIJ87_15400"
     CDS             <1..>1177
                     /locus_tag="VIJ87_15400"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HEY5445819.1"
                     /translation="KLGGQAQVPGVAGTWKDLTDNVNVMAANLTEQVRGIVKVVTAVA
                     NGVLTQKLTVNAKGEVAALAETINNMTDTLATFADQVTTVAREVGVDGRLGGQANVPG
                     AAGTWKDLTGNVNLLADNLTNQVRAIAEVATAVTQGDLTRTIQVEARGEVAELKDNIN
                     TMITNLRLTTEHNTEQDWLKTNLARFTGMLQGQRDLTRVGRMLLSELTPLVNAQQGLI
                     YQMKSEDSGSLVLLSAFASDGADGHLRQVKVGDGLVGQCAAEKRKMLITDLPPNTISV
                     RTGLFEAVPRNVIVLPVLFEDSVKAVIELASLSAFTTLQLALLEQLTGSIGIVLNSIE
                     ATMQTESLLEQSQQLATELQTRQNELQQTNEQLAQKAQQLAEQNAEVERKNREIEQAR
                     "
BASE COUNT          321 a          309 c          330 g          217 t
ORIGIN      
        1 gaaaacttgg cggacaagca caagtgcccg gtgtagcggg aacgtggaaa gatcttactg
       61 acaacgtaaa cgtcatggct gcgaacctca ccgaacaggt gcgcggcatc gtgaaagtcg
      121 tgactgccgt cgccaacggt gtcctcactc aaaaattgac ggtcaatgcc aaaggtgaag
      181 tcgcagcgct cgccgaaacg atcaacaaca tgaccgatac gttggcaaca tttgccgatc
      241 aggtcaccac agttgcccgt gaagtcggag tggatggtcg tttgggcggc caagctaacg
      301 ttccgggcgc agccggtacg tggaaggact taaccgggaa cgtcaacttg cttgccgaca
      361 acctgacgaa ccaagtccgc gcgattgccg aggtcgcgac ggccgttacg caaggtgatt
      421 tgactcgtac gattcaagtc gaagcgaggg gtgaagttgc ggaactaaaa gacaacatca
      481 acacaatgat cacgaacctt cgcctgacaa ccgaacacaa cacggaacag gactggttga
      541 aaacaaacct cgcacggttc accggcatgc ttcaaggcca acgcgacctg acgcgagtgg
      601 gccgaatgct tctgtctgag ctgacgccac tcgttaacgc tcagcagggc ctcatttatc
      661 agatgaagtc agaagactct ggcagcctag tcctgctatc ggcttttgct agcgacggag
      721 cagatgggca tttgcggcaa gtgaaggttg gagacgggct ggtcgggcag tgtgcagcag
      781 aaaagcgaaa aatgcttatt acggatttgc cgcccaacac gatatccgta cgaacggggc
      841 ttttcgaggc ggtacccagg aacgtaatcg ttcttcccgt ccttttcgag gacagcgtaa
      901 aagcggtcat cgaactggct tctctgagtg cctttacaac gcttcagctt gctctgctgg
      961 aacaactcac cggaagtatt ggaatcgtgc tcaacagcat cgaagcgaca atgcagacgg
     1021 aatcgttgtt ggagcaatcg caacagctcg cgaccgaatt gcaaacccgt cagaatgaat
     1081 tacagcaaac caacgagcag cttgcacaga aggcgcaaca gctcgcagaa caaaatgccg
     1141 aagtggagcg caagaaccgg gaaatcgagc aagcgcg
//
LOCUS       DATCGC010001616         1267 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_57329, whole genome shotgun sequence.
ACCESSION   DATCGC010001616 DATCGC010000000
VERSION     DATCGC010001616.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1267)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1267)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1267
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57329"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..480)
                     /locus_tag="VIJ87_15405"
     CDS             complement(<1..480)
                     /locus_tag="VIJ87_15405"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5445820.1"
                     /translation="MNSLRYAFRMLMKNPGVSLITVITLALGIGANTAIFSVVNGVLL
                     RPLPYKDPERLVALWENVPTHGRWRASPANFFDWKKQSTSFEGMAAYGGSAATLTGQG
                     EPELLLGTVVSSGYFGVVGVEPQLGRSFVAEEHEPGKGQVVILGFDLWQRRFGGDPRV
                     "
     gene            complement(625..>1267)
                     /locus_tag="VIJ87_15410"
     CDS             complement(625..>1267)
                     /locus_tag="VIJ87_15410"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY5445821.1"
                     /translation="IVGVVGDVRQMGLDEAVKAEMYLPYQQVEEQPWFIPRDLAIRTS
                     GETSSLVGAVRQVIREIDPDQPISNVATMSDLLGEEAGQRRVGMIMLAAFSVLALLLA
                     SIGIYGVLAYFVTQHTNEIGVRLALGATPRNILLMIVKRGMGLTLLGISIGLAAAFAL
                     TRLMTSLLFEVKAVDPLTFLFVPLLLAVAALLACSIPARRAMKVDPLVALRYE"
BASE COUNT          340 a          375 c          294 g          258 t
ORIGIN      
        1 aactcgtggg tcgccaccaa accgtctttg ccaaagatcg aaaccaagga tgacaacctg
       61 gcccttacca ggttcatgct cctcagcgac aaaggaacga ccaagctgtg gctcaactcc
      121 gaccacgcca aagtaacctg aactaactac cgttcccagg agcagttcag gttcgccctg
      181 accggtaagt gtcgcagccg atccgccgta cgccgccatg ccctcaaacg atgtgctctg
      241 tttcttccag tcaaaaaagt ttgctggaga agcacgccaa cgaccatgag tggggacgtt
      301 ttcccaaaga gcaactaagc gttccggatc cttatagggt aacgggcgaa gcaacactcc
      361 gttaaccaca ctgaagatcg cagtattggc gccgattccc aacgcgagag taatcacggt
      421 gataagtgac actcccgggt tcttcatgag catgcgaaac gcgtagcgaa gagagttcat
      481 agaatcattg gcctcagata tcaatccaca ctctagagga tgcgccggtg cagtagcccg
      541 actgtcaagg agggctctgg ttcaactgat caacggctat ccccacattg agccctcctt
      601 gacagtcggg ctactgcacc gagctcactc gtaccttagc gcgaccaacg gatcgacttt
      661 catcgcccgc cgtgctggga ttgaacatgc caacaaagcc gcaacggcaa gcagcaacgg
      721 cacaaacaaa aaggttagtg ggtcgactgc tttcacttcg aagagcaacg aagtcattag
      781 cctggttaac gcaaacgctg cagccaggcc aatcgagatc cccaaaagcg tcaatcccat
      841 tcctcttttc acgatcatca atagaatgtt tcgtggagtt gctcccaggg caagtcgcac
      901 tcctatttcg tttgtatgct gagtaacgaa gtacgcgagc actccgtaga taccgatcga
      961 agcaagcagt agagccaaaa cggaaaacgc tgccaacatg atcattccca cacgtcgctg
     1021 tcctgcttct tcaccgagta aatcggacat tgttgcaaca ttggaaatag gctgatcagg
     1081 atcgatctca cgaatcacct ggcgcaccgc accaaccaaa ctcgaagtct ctccacttgt
     1141 tcgaatcgcc agatcgcgcg ggataaacca gggttgctct tcgacctgct gataaggcag
     1201 atacatctcc gcctttaccg cttcatcgag acccatctgg cgaacatcgc ccacaacgcc
     1261 gacaatt
//
LOCUS       DATCGC010001617         1292 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_288930, whole genome shotgun sequence.
ACCESSION   DATCGC010001617 DATCGC010000000
VERSION     DATCGC010001617.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1292)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1292)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1292
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_288930"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1292)
                     /locus_tag="VIJ87_15415"
     CDS             complement(<1..>1292)
                     /locus_tag="VIJ87_15415"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5445822.1"
                     /translation="LPLWLDEGLAEFYSTFETDGEVNVTLGVPVPQHVFYLRSKPPLP
                     FKTLLAVDHKSPHYNESSKAGMFYAESWALVHYLMNGNDQKQQPQLVRFIDLLNSGSP
                     IEESFQKVFQVNFNTFQEELDRYIRGFTFPVLKVTFRNELNTSKDMEATTLSESESQY
                     YQGDLLFYLRQFPEAKALLEKSIAADPKLGSSRVTLGMIHLSENREDEAEKVFQSAID
                     AEPGNYLAHFYYGEMLLAKRRYEDAINSYKQAVLLKPDIARIYSQLGYAYMKANQEDE
                     AIKTFEKGISVNPKETYFYRSLGYIYFRRGQGELSAGEAYSYLARQGWREEHSQYMAL
                     LWYFSLRQMKNVEFATKSLQNSIAKVDPADWPYPVLQYLNHALTLNELLEQAKDVDQQ
                     TEAHAYAGFELLFNGEREAALEHLHWVRDKGNSNFVEYG"
BASE COUNT          322 a          344 c          290 g          336 t
ORIGIN      
        1 ccatactcaa caaaattact gttcccttta tccctgaccc aatgcaagtg ttccaacgcc
       61 gcttcacgtt caccgttgaa taacaattca aacccggcgt aagcgtgggc ctccgtctgt
      121 tggtcgacgt ccttcgcctg ctcgagtaac tcgttcaacg tcagtgcgtg atttaagtat
      181 tgcaataccg ggtaaggcca atcagccgga tcaaccttcg cgattgagtt ctgcaaactc
      241 ttcgtcgcaa actcgacatt cttcatctgc ctcaagctga agtaccaaag caaggccatg
      301 tattgcgagt gttcttctcg ccaaccttgc ctagccaaat aactgtacgc ctcaccagct
      361 gacagctcac cctgaccacg tcgaaaatag atgtagccta acgaacgata gaagtaggtc
      421 tccttcggat tgacgcttat tcccttttca aatgtcttga tggcctcgtc ttcctggttg
      481 gccttcatgt atgcataacc caattgggaa tagatgcgcg caatatcggg cttcaacaaa
      541 accgcctgct tgtaagagtt gatcgcatct tcgtaccggc gctttgccaa gagcatttct
      601 ccgtaataaa aatgcgcaag atagttgccg ggttcggcgt caattgccga ttgaaaaacc
      661 ttctccgcct catcttcacg attctccgac agatggatca ttcccaaagt cacgcggctg
      721 gaacccaact tagggtccgc ggcaatggac ttctccagta gtgctttggc ttcaggaaac
      781 tgccgcaagt agaaaagaag gtcgccctgg taatactgcg actctgattc agagagcgtt
      841 gtcgcttcca tgtccttgga agtgttgagc tcgttgcgaa acgttacctt cagaactgga
      901 aacgtaaaac ctcgaatata acgatccaac tcctcctgaa acgtattgaa gttaacttga
      961 aacaccttct gaaaactctc ttcgatggga gagccggaat taagaaggtc gatgaatcga
     1021 actagctgcg gctgttgctt ttgatcgttg ccgttcatca ggtagtgaac aagtgcccac
     1081 gactcggcat aaaacatccc ggctttactg ctctcgttgt agtgcggcga tttgtgatct
     1141 actgccagca acgtcttgaa cggaagtggc ggtttgcttc gcagatagaa aacatgctgg
     1201 ggaacgggta caccgagcgt tacgtttact tctccatccg tttcgaacgt actgtaaaac
     1261 tccgccagtc cttcatcgag ccacagtggt aa
//
LOCUS       DATCGC010001618         2172 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_325146, whole genome shotgun sequence.
ACCESSION   DATCGC010001618 DATCGC010000000
VERSION     DATCGC010001618.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2172)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2172
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325146"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(89..1207)
                     /locus_tag="VIJ87_15420"
     CDS             complement(89..1207)
                     /locus_tag="VIJ87_15420"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: protein motif:HMM:NF002872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006002 - fructose 6-phosphate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent 6-phosphofructokinase"
                     /protein_id="HEY5445823.1"
                     /translation="MSKQKRVGVLTGGGDAPGLNPAIKGLVYRGSELELDVVGLFDGW
                     RGLLDPLPEVLPLDRETVRRWDRDGGTNLGSSRTNPFKQLAADGSPTDLSSQVLENVK
                     TLGLDAIVACGGEDTLGVAARLSEKGVPIVGVPKTIDKDLAATDYTLGFDTALRNVSE
                     IIERSRTPAGSHGWVQIVEVMGRHAGHLALWSGIAGQAHLILIPECPFRYERVFQLLH
                     DRLGEPGLSRGKSSRPRYSVIVVAEGARAEDGEMVTIDDRHDPFGHVRLGGIGEVMAR
                     RISSETPYEARAVMLGHPQRGGSPSPVDRVMGLMFGARAADAIANGDYGKMVSARGVA
                     PACELSLVDISAVVGTINTVDVDRYYDTERYHFKHIGM"
     gene            1597..>2172
                     /locus_tag="VIJ87_15425"
     CDS             1597..>2172
                     /locus_tag="VIJ87_15425"
                     /inference="COORDINATES: protein motif:HMM:NF022818.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:1780..1782,aa:Sec)
                     /transl_table=11
                     /product="DUF3179 domain-containing (seleno)protein"
                     /protein_id="HEY5445824.1"
                     /translation="MFRPHANVAFARAPEASYVGDNDMVLAVKSNGEAVAYPVRLMAY
                     HHVVPDVVGGVPIVATYUTLCHTGLVWETTVNGRLLHFHLAGINNQNFIMRDDETGSW
                     WQQVSGEAISGPLKGTKLRSIEQDELTFAFWKKEEPNGRVLKPDPTVAANDYVPADWE
                     QRMSRARVASVHIDQTIPPRSLVVGLTIGNAS"
BASE COUNT          520 a          606 c          524 g          522 t
ORIGIN      
        1 cgtccttttc acgcccttcc ccacttgttc ttcaaatcag ctagcttatt gtgaaatcct
       61 caatctgaaa tctgaaatct tcaattcctt acattccgat atgcttgaag tgatacctct
      121 ccgtgtcgta ataacgatcc acatcgactg tgttgattgt tcctacgact gccgaaatat
      181 caaccagcga aagttcacat gccggcgcta ctccgcgcgc tgaaaccatt ttcccataat
      241 cgccgttagc aatcgcatct gcggcacgcg cgccaaacat taaacccatt acgcgatcga
      301 ctggactcgg cgatccgcca cgttgtggat ggccaagcat aacagctcga gcttcgtacg
      361 gagtttcact gctaatacgc cgggccatca cttcgccaat tccacctaag cggacatgac
      421 caaacggatc gtggcgatcg tctatggtca ccatctcgcc atcttctgca cgcgcgccct
      481 cagcgaccac gattacggaa tagcgcgggc gactggattt cccgcggctg agaccgggtt
      541 cgcccaggcg atcatgcaag agttggaaaa ctctctcgta tctgaacgga cattcaggga
      601 tcagaatcaa atgcgcctga cctgcgatac cggaccacaa cgccaggtga ccggcatgcc
      661 ggcccatcac ttcaacaatc tgtacccaac cgtgtgaacc cgcgggcgta cgcgaacgct
      721 cgatgatttc tgaaacattg cgcagtgctg tatcaaaacc gagtgtgtag tccgtcgccg
      781 cgagatcttt atcgatcgtc ttggggacac cgacaatagg cactcccttt tcacttagtc
      841 tcgccgctac tcccagcgtg tcttctccac cacaagcaac aatcgcatca agaccaagtg
      901 ttttgacgtt ttcaaggacc tgcgacgaca agtctgttgg actgccatct gccgcaagtt
      961 gtttgaaagg attcgtccgc gatgatccga gattcgtgcc tccatcacga tcccagcgac
     1021 gcactgtttc tcgatcaagc ggcagcactt cgggaagcgg atccaacaac cctcgccagc
     1081 catcgaataa tccaacaacg tctaattcca gttccgaacc tcgataaacc aatcccttga
     1141 tcgcgggatt caatccaggg gcgtctccgc ctcctgttaa cacaccaact cgtttctgct
     1201 tcgacatgaa attttctttt cctaattatg ggtttgaaat atatgagcta tcataacgta
     1261 atgaaccgca tatcagcccc aagctcaagt tcgaaagcca aacgacgcct catgtggcta
     1321 ggtttgcttg caattctaat gatcggatta atcgttgtaa taactccgat ctggatcatt
     1381 atgcctttca aggcacaaac ccaacgcggg ctcgaagtgt cgtacttcat gcgcaggatc
     1441 tcaccggtcg tcacaatcat cgcatccttg atcttcatca tcgttgcggc ttggctgtgg
     1501 agaggaagcc gctggttcgg caaagtgttg gtagtgttgc tggcgcttcc tttgtttgct
     1561 gcgacatgga tgtcacgaca gaatcatttc gaatggatgt ttcgtccgca tgccaacgtc
     1621 gcattcgcgc gcgctcccga agcaagctac gtcggcgata acgacatggt gctcgccgta
     1681 aagagtaatg gtgaagcggt agcatatccg gtaaggctga tggcgtatca ccatgtcgtt
     1741 ccagacgtgg tgggaggagt gccgatagtc gcaacttatt gaacgctctg tcacaccggt
     1801 ctggtgtggg aaacaacggt caatgggcgt ttgcttcact ttcatctggc gggaattaat
     1861 aaccagaact ttattatgcg agatgacgaa accggatcat ggtggcaaca ggtttccgga
     1921 gaagcgatca gcggtccatt aaaaggaacg aagcttcgct cgattgaaca ggacgagttg
     1981 acgtttgcct tctggaaaaa agaagagccg aacggtcggg tgctcaaacc ggatccgacg
     2041 gtcgctgcaa acgattacgt tccggccgat tgggaacaac gaatgtcgcg ggcccgcgtc
     2101 gcgtctgtgc acatcgatca aactattccg cctcgctcgt tggtagtcgg gttgacgatt
     2161 ggcaacgcat ca
//
LOCUS       DATCGC010001619         1619 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_357995, whole genome shotgun sequence.
ACCESSION   DATCGC010001619 DATCGC010000000
VERSION     DATCGC010001619.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1619)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1619)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1619
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_357995"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..375)
                     /locus_tag="VIJ87_15430"
     CDS             complement(<1..375)
                     /locus_tag="VIJ87_15430"
                     /inference="COORDINATES: protein motif:HMM:NF025690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4388 domain-containing protein"
                     /protein_id="HEY5445825.1"
                     /translation="MAIQGTLKTMSLTDLLQFLAAGRKTGTLKFDLGKITKQVYFQNG
                     LIAGSKSNDPREYLGQILLHYGKLDESQLQMAREVQRTSGGKLGEVLVEQGFLTESEV
                     LDILKTRTLDAIYDLFVWTEGQF"
     gene            complement(626..982)
                     /locus_tag="VIJ87_15435"
     CDS             complement(626..982)
                     /locus_tag="VIJ87_15435"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HEY5445826.1"
                     /translation="MDERRSKPRLSVSLDAVWDGDTGAKHSARVTDLSEGGCYLDAVG
                     EVMTGEIVAFRVLLPDDDWLYLEGEVKHHRHGFGFGVQFVDLNEEQTEKLTFLLRLAE
                     ESDPLSFAISADLVED"
     gene            complement(1221..>1619)
                     /locus_tag="VIJ87_15440"
     CDS             complement(1221..>1619)
                     /locus_tag="VIJ87_15440"
                     /inference="COORDINATES: protein motif:HMM:NF039905.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445827.1"
                     /translation="QTAMRSEATRVIVQLDDSNERQLSVVNFCIANARYFGGGMKIAP
                     DAKLSDGKLDVVSIGDLSAVKIMTSASRIYFGSHLSMSEVNHALAKKVVVRPALRSCE
                     VPLEVDGELPGRLPATFQVIPGALRVRCKA"
BASE COUNT          430 a          446 c          338 g          405 t
ORIGIN      
        1 aaactggcct tcagtccaga caaacaaatc gtagatcgca tcgagcgttc tcgttttcag
       61 tatgtcgagt acctcgctct cagtgaggaa tccttgttca accaaaactt cgcccaactt
      121 tccaccggaa gtcctttgaa cctctcgagc catctggagc tgcgactcat cgagctttcc
      181 gtaatgcaat agtatttgac ctaggtattc tcgagggtcg ttggactttg agcctgcgat
      241 taggccgttt tggaagtaga cctgttttgt gatctttccc agatcgaatt tcaacgtccc
      301 cgtcttccta ccagctgcca aaaactgcag caggtcggtc agactcatcg ttttcaaagt
      361 gccttggatc gccattattc gtcggttcgg tcgctgctta gcagcactgg gctttcactg
      421 tgaagatctt tggcgaggag gtcgattttg ctggaccaaa gaatattgaa gcacaagcag
      481 agtacatttg aactactccg agattcaagt cagacacatt tacatcccta gttttattgc
      541 cgggaacgcg caaaagccga ttcactcttg ctctaaacgc aatgaaaggt gtccacgaaa
      601 gcgacacccg actcgaatcc tgattttagt cttcgacaag atcagcagat atcgcgaaac
      661 taagagggtc tgattcctcc gcaagtcgca acaaaaacgt caacttctct gtctgctctt
      721 cattcaagtc gacaaactga acaccgaaac caaatccatg tcggtgatgc ttcacctcac
      781 cttcaagata cagccaatcg tcgtccggca acaaaactcg aaatgccacg atctcaccgg
      841 tcatcacttc accgacggcg tctaaataac atccaccctc ggagagatca gtcacccgag
      901 cagaatgttt ggcccccgta tcaccatccc agacggcatc aagacttaca cttaaccggg
      961 gttttgatct tcgctcatcc atatttcaca tcatcataaa agttttggca gggcacggaa
     1021 aggaaaaaca ttttcgcctt gcgcgaacca gtccaaccca cgcatccggc ttttccattt
     1081 gccgcgaaaa acttagagaa gatactcgtt ccaaggtaat tcctggaaga agatgagtcg
     1141 acttccagaa aactattctt cacaatgcaa atggttctcg tgtcacttct catccgtacg
     1201 ctcaaaaata agtctttgat tcaagctttg cagcgtactc gcagcgctcc cggaatgacc
     1261 tgaaacgtgg caggcaatcg tcctgggagt tcgccatcga cttcgagtgg aacctcgcaa
     1321 ctccgcaaag ccggtctaac cacgaccttc ttagccaatg cgtgattaac ctccgacatc
     1381 gaaagatgcg atccaaaata gattcgggaa gcgctggtca tgatcttgac ggcacttaga
     1441 tcaccaatgc tgaccacatc caattttccg tcactgagct ttgcatccgg ggctatcttc
     1501 attccaccac caaaataacg ggcgttggcg atacaaaaat tcacgaccga aagttgtctc
     1561 tcattagagt cgtcgagctg aacaatcact cgtgtcgctt cagaacgcat ggccgtctg
//
LOCUS       DATCGC010001620         1420 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_325160, whole genome shotgun sequence.
ACCESSION   DATCGC010001620 DATCGC010000000
VERSION     DATCGC010001620.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1420)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1420)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1420
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325160"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1420
                     /locus_tag="VIJ87_15445"
     CDS             <1..>1420
                     /locus_tag="VIJ87_15445"
                     /inference="COORDINATES: protein motif:HMM:NF012771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445828.1"
                     /translation="AHATHYGRICAVETPEGANIGLVLNLANYARINDFGFIETPYRK
                     VINAATAKDAVGHIAAVDLEDENGKLIVKAGAKITDADAKKLAAVKERATWPVKAKVT
                     SDIIWLDASGEESSVIAGAGNEIDEDGYFVAERVSARMNLKSGEVDADEVTHMDAARN
                     QIIGSSAGLIPFIEKNYVYRSLMGSNQQRQAVPLIQPKAPTVGTGLEASAARNTGQVI
                     LAEGDGEVVKAEGSQVVVKYKDGESVTYEPQHFVRSNEGTSINQKVVVSSGDKVKNGD
                     VLIEGMSIQNGELALGKDLIVAFMPWSGYNFEDAIIISRRLVENDTLTSVHIVDFMIE
                     VRETKLGPEIVTRDIPNVSEDALRHLDDDGIVRIGAEVHPGDILVGKITPKGEQELSS
                     EERLLRAIFGEKAKEVRDTSQRMSNGKHGKVVGVKIFSRETGHELKAGVLMQIQVFVA
                     QMRKIAVGDKLGGRHGNKGVIAR"
BASE COUNT          383 a          373 c          372 g          292 t
ORIGIN      
        1 gcccacgcaa cacactacgg ccgcatttgt gcggttgaaa cccctgaagg cgccaacatc
       61 ggtttggtgc tgaacctcgc caactacgcg cgcattaacg actttggctt cattgaaacc
      121 ccttatcgca aagtcatcaa cgccgcaacc gccaaagatg cggtcggcca cattgccgcc
      181 gttgatctcg aagacgaaaa tggcaaattg attgtaaaag ccggtgctaa aatcaccgac
      241 gctgacgcca agaaattggc agccgtaaaa gaacgcgcta cctggccagt taaggcaaaa
      301 gttaccagcg atatcatttg gctcgacgct tcgggcgaag aatcatcagt tattgccggt
      361 gccggtaacg aaatcgacga agacggctac tttgttgccg aacgcgtcag tgctcgcatg
      421 aacctgaaat caggtgaagt tgacgccgac gaagtcaccc acatggatgc cgcccgtaac
      481 cagattattg gttcgtcggc cggtctcatt ccattcattg aaaagaacta cgtatatcgc
      541 tcgctcatgg gtagtaacca gcagcgccag gctgtaccgc tgatccagcc aaaggcgccg
      601 accgttggta cgggccttga ggcttcggct gcccgcaaca ccggtcaggt tatcttggcc
      661 gaaggcgatg gcgaagttgt aaaagctgaa ggttcacaag tggtcgtcaa atacaaagat
      721 ggcgaatcag ttacctacga gccacagcac tttgttcgca gcaacgaagg cacctcgatc
      781 aaccaaaaag tggtagtaag ctctggcgac aaagttaaga acggcgatgt tttgatcgaa
      841 ggtatgtcga ttcaaaacgg tgaattggcc ctcggtaaag acctcatcgt ggcattcatg
      901 ccatggagcg gttacaactt cgaagacgcc atcatcatta gccgccgact tgtcgaaaac
      961 gacacactta cctcagtaca catcgttgac ttcatgatcg aagtccgcga gaccaagctg
     1021 ggcccggaaa ttgtcacacg cgacattcca aatgtttccg aagacgcgct gcgtcacttg
     1081 gacgacgacg gtattgttcg catcggtgcc gaagttcacc ctggtgacat cttggttggt
     1141 aaaattacac caaaaggtga gcaggaatta agctcagaag aacgcttgtt gcgcgcaatc
     1201 ttcggcgaaa aggccaaaga agttcgcgac accagccagc gcatgagcaa cggtaaacac
     1261 ggtaaagtcg ttggcgtaaa gatcttcagc cgcgaaactg gccacgaact gaaagccggt
     1321 gtgctaatgc agatccaggt gttcgttgcc caaatgcgca agatcgctgt gggtgacaaa
     1381 ctcggtggtc gccacggtaa caagggtgtt atcgcccgga
//
LOCUS       DATCGC010001621         1810 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_123890, whole genome shotgun sequence.
ACCESSION   DATCGC010001621 DATCGC010000000
VERSION     DATCGC010001621.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1810)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1810)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1810
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123890"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..934)
                     /locus_tag="VIJ87_15450"
     CDS             complement(<1..934)
                     /locus_tag="VIJ87_15450"
                     /inference="COORDINATES: protein motif:HMM:NF012339.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HEY5445829.1"
                     /translation="MSTNQTAFEAFLNEHDEEAWSATLTALLRSIHEVDRNATQIWFA
                     FYPLGLFQTLVRSEDPEKLSQQLLMQGNFYLKDQIDKSHTFLYGHRYWPEVKAAVQKH
                     AADFERNASSLSDQITAVASEVAKKSKLDKSLMVGITAVAFMTIQQAGIDAFSKPGSV
                     NIDKKHARKSPDQILRDRAKDDSQGLFGFLKTINKKWTVVHDENDDKAMYVMNNIQDL
                     AWGAAEDRSRNWRELDPRRGEGPIPVECRSASCGTCWVGVLGGAEKLSEVAAREGKKI
                     KEMGYIDTNETKPLIRLACQAQTHGAVSIVIPPWN"
     gene            1233..1586
                     /locus_tag="VIJ87_15455"
     CDS             1233..1586
                     /locus_tag="VIJ87_15455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445830.1"
                     /translation="MDAERPEVVKPGRTFDSAYSFSFAVGVGLLLFIGGLVLSLTVGQ
                     SASIGLIFGIPLLIAGLVLPLFMMRDLLHHNEVSGDCPFCGAPIKTSDATIRLNCPTC
                     KNLIEVREMTLQRGE"
     gene            complement(1592..>1810)
                     /locus_tag="VIJ87_15460"
     CDS             complement(1592..>1810)
                     /locus_tag="VIJ87_15460"
                     /inference="COORDINATES: protein motif:HMM:TIGR02229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C oxidase subunit IV family protein"
                     /protein_id="HEY5445831.1"
                     /translation="YRFGNHELQLNTVIALTIAVTKATFVVLYFMHVRYSSRLVWVIV
                     ASALFWMGIMFALTFSDYWTRGWLPVGY"
BASE COUNT          434 a          474 c          452 g          450 t
ORIGIN      
        1 cgttccatgg tggaattacg atcgacacag caccgtgcgt ttgtgcctgg cacgcgagac
       61 gaatcagtgg cttagtctca ttggtgtcga tgtagcccat ctccttaatc ttctttcctt
      121 cacgcgcggc cacttcggat aacttctcgg cgcctcccag tacaccaacc caacacgtac
      181 cacatgacgc ggaacgacac tcaaccggga ttggaccttc accccgtcgt ggatcaagtt
      241 cgcgccagtt acgtgagcga tcttcagcgg ctccccacgc aaggtcctgg atgttgttca
      301 ttacatacat ggctttgtcg tcgttctcgt cgtgcacaac agtccacttc ttgttgattg
      361 tcttgagaaa accaaacaaa ccctggctgt cgtccttggc acgatcgcgc agaatttgat
      421 cgggcgattt gcgagcatgt ttcttgtcga tgtttacgct gccgggctta ctgaatgcgt
      481 cgataccggc ctgctgaatc gtcatgaacg ccacggctgt aataccaacc atcaatgact
      541 tgtccagctt cgattttttg gcgacttcgc tagcaactgc agttatttga tctgacaacg
      601 acgaagcatt tcgctcaaaa tcggcggcat gcttttgcac ggcagctttc acttccggcc
      661 aatagcggtg gccatagagg aaagtgtgtg acttgtcgat ttgatctttg agatagaagt
      721 tgccctgcat gagtaactgt tgcgaaagct tttccggatc ttcagagcga accagtgttt
      781 gaaagagacc aagcggataa aacgcgaacc agatctgagt ggcgtttcga tcgacttcgt
      841 ggattgagcg cagcaacgcg gttagtgtgg ctgaccaggc ttcttcatcg tgttcattta
      901 agaaagcttc aaaagcagtt tgattggtag acataaagcg taaatatcgt ccttctatta
      961 tcagttgaga actatggcgc taaaagcgac cggcaattaa aacacaaact tcgacagggt
     1021 gcctccttgg agtgcggtgg cctggcaccg ctttggtaaa gcatcctcct ccagtaactc
     1081 gcgatatgaa agcggtgccg ggccaccgca ctccaaggag gcgtcataaa ttcctcatct
     1141 tcgttgacaa ggacaaaccc agcagagtaa aaacaaaccc tagccctgag ttcttcccca
     1201 gacctttcca gttcccacgg aggtgttttg aaatggacgc tgaaagaccg gaagttgtga
     1261 aaccaggacg tacttttgat agcgcttaca gtttctcttt cgccgtcgga gtaggattgt
     1321 tgttgttcat cggcggactg gtactcagtc tcaccgttgg ccaaagcgcc agtatcggat
     1381 tgatcttcgg aatcccacta ctgatcgccg gtctcgttct accgttgttt atgatgcgag
     1441 acctgcttca tcacaacgaa gttagcggcg actgtccatt ctgcggcgcc ccaatcaaaa
     1501 cctcagacgc aacgattcgt ctgaactgtc ccacctgcaa gaacctgatt gaagttaggg
     1561 aaatgacgct ccagcgcgga gagtaagatc gtcagtaacc aacgggtagc cagcctcgcg
     1621 tccagtagtc gctgaacgtg agcgcgaaca ttattcccat ccagaacaac gcggaagcta
     1681 caatcaccca gacaagtcgt gagctgtagc gaacgtgcat gaagtagagc acgacgaacg
     1741 tcgctttggt caccgcgatt gtgagcgcta tcacggtgtt gagttgaagt tcgtgattgc
     1801 cgaagcgata
//
LOCUS       DATCGC010001622         1096 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_255815, whole genome shotgun sequence.
ACCESSION   DATCGC010001622 DATCGC010000000
VERSION     DATCGC010001622.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1096)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1096)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1096
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_255815"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..716)
                     /locus_tag="VIJ87_15465"
     CDS             complement(<1..716)
                     /locus_tag="VIJ87_15465"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY5445832.1"
                     /translation="MRTITCAFGIFLLLALTSTSRVSSNNQPSFKTQDDFALTKVADG
                     VYGAIAKPGGLASGNAGFVVGDEGVLVVDTFFTPVAVEELIDAIGVETKQPIKYAVNT
                     HYHLDHTGGNQVFAGLSIPIIGHDNLIAWQTTKNRRFLPASDELQKRRADAVKQLSET
                     PADQTDKRAQLERGIRRFDALLTIKLTNPTVTFASGTVHLHLGQREILLFTLPGHTGG
                     DVLAYVPDANVVFTGDMGWR"
     gene            complement(856..>1096)
                     /locus_tag="VIJ87_15470"
     CDS             complement(856..>1096)
                     /locus_tag="VIJ87_15470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445833.1"
                     /translation="GVVGARSSLVTSKRNMIDLPFGERGDNYNPQADAVQFQPITIDA
                     AAVTEILQRHPLVTPSKPTSLLFWDRRRPRLPTML"
BASE COUNT          235 a          276 c          303 g          282 t
ORIGIN      
        1 tttcgccaac ccatgtcgcc cgtaaacacc acgtttgcat caggcacgta ggccagcaca
       61 tcaccgcccg tgtgccccgg taaagtgaac agcaaaatct cgcgttgccc aaggtgaagg
      121 tgaactgtgc cgctcgcgaa ggtgacggtt ggatttgtta acttgatcgt cagcagcgca
      181 tcgaagcgcc tgatccctct ttcgagttgg gctcgcttgt cggtctgatc tgccggagtt
      241 tcgcttaact gcttgactgc atcggcgcgt ctcttttgca gttcatcgct cgctggaagg
      301 aaacgacgat tcttggtggt ttgccaggca atcaggttgt cgtggccaat gatcggaatg
      361 gagagtccgg caaatacctg gttgccaccg gtgtgatcga ggtggtagtg agtgttgacg
      421 gcatacttga tgggttgctt tgtttccact ccgatggcgt cgatcaactc ttcaactgca
      481 accggtgtaa agaaagtgtc aaccactaag actccttcat caccaacaac gaaaccagcg
      541 tttccagacg caagtcctcc cggctttgcg atggctccgt aaactccgtc agcgactttg
      601 gtgagtgcga agtcatcttg tgttttgaat gaaggttgat tgtttgaact gacgcgcgaa
      661 gttgacgtga gtgcaagtaa caggaagatt ccgaacgcgc aagtaattgt tctcatgttg
      721 tcctcgtttg tagcggtggc tgtgtttgat aacacatccg ggtcatcaag cgcgagcaag
      781 tgactctcaa aaactggacg cgctcttctg ggaccgcagg cgtcctcgcc tgcaatacgt
      841 cgccactaag gtcacttaga gcatcgttgg caggcgagga cgcctgcggt cccagaagag
      901 caggctcgtt ggtttggagg gggttactaa agggtgacgt tgaagaattt cggtcactgc
      961 tgccgcgtcg atcgtgattg gctggaattg aaccgcatct gcttgcgggt tatagttatc
     1021 tccccgttcc ccaaaaggta aatcaatcat gtttctcttg gaggttacta gtgaacttct
     1081 tgcgccaacc acgcct
//
LOCUS       DATCGC010001623         2458 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_288969, whole genome shotgun sequence.
ACCESSION   DATCGC010001623 DATCGC010000000
VERSION     DATCGC010001623.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2458)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2458)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2458
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_288969"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..425)
                     /locus_tag="VIJ87_15475"
     CDS             complement(<1..425)
                     /locus_tag="VIJ87_15475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445834.1"
                     /translation="MSNFTEWLEAYGETSWDFQSFYAGPIGGRAKSLYYRNRLIGTAA
                     VAPMVFCEAFLPSARRLFHHRMRFPIADAHYAMGFAFLYQTTAKPVYLQKAMHFLTAL
                     RESRCRGFNEYCWGYPFDWVWHGGTIKAQTPLITTTPYV"
     gene            complement(561..2330)
                     /locus_tag="VIJ87_15480"
     CDS             complement(561..2330)
                     /locus_tag="VIJ87_15480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445835.1"
                     /translation="MRKQEATLLDNPGLSIEGKKIARILGFFGVPWRALTTTKLLAHN
                     GADRESSSKCRLMSTSDTLLQLLNDLERDPAFMQFWEEQVHSAFVYAGDDSEILRKLI
                     RRLTGDNGIVISKINPGVGDLTVSDQLDDFCKVMAGVRTAASKADFDTSLIFNTPKES
                     TINIISLGHGGTFLKLEYNGVPVFFSTSKEIIDIDAELTSQNFDVREHFLNAVPLVLY
                     IKWAFSDACWNAPETNACLVIDDPVLKPTHGFVNFQELLSLMKRHKFSTNIAFIPWNW
                     RRSAPQVVRLFKENPDNYSVSVHGCDHTKAEFGGADRWRLYWKTREALDRMNRHESIT
                     GICHDRVMVFPQGIFSEAAMSALKHSGLIAAVNSDVISSDSQPRVVTISELWDIAVMG
                     YSDFPIFTRRYPWEGIANFAFDVMLGKPAIMLIHHDYCSDHCARLIDFIKGLNALKCP
                     LTWSSLGEVVRRSYRQREVSPDVVELEMYGTELRIENRSGRRKRYLIRRRESEPSGIQ
                     EVRVGSEEMVWNFHNGRIDFEVEGDPGENRIIAIKFRDLDGNGQCEETASYKAKTMLR
                     RYLCELRDNYVTTTKLRFVGSAK"
BASE COUNT          621 a          644 c          602 g          591 t
ORIGIN      
        1 taaacgtaag gcgtggtcgt gatcaaaggt gtttgtgctt tgattgtgcc cccatgccaa
       61 acccaatcaa aaggataccc ccagcagtac tcattgaatc ccctgcaacg gctctctctc
      121 agtgccgtca ggaagtgcat cgctttttgc agatagaccg gcttcgcggt cgtctgatag
      181 aggaatgcga atcccatagc gtaatgggca tcggcgattg ggaaccgcat gcggtgatga
      241 aacaggcggc gcgccgatgg caggaacgct tcacaaaaga ccatcggagc aacggcagcg
      301 gtcccgataa ggcggtttcg gtaatagagc gacttggcgc gcccgccgat tgggccagca
      361 taaaagcttt gaaaatccca ggaggtttca ccgtaagcct ccagccattc ggtgaagttc
      421 gacaagattt ttaggattct gtccgtaagt tgatcgggtg aattcaagtc caattgaaga
      481 aattagagat ggaaggggtg aggcgaagaa ccgcgcaaag tgagtgccct gtctgcctat
      541 cctgcctctt cacaagcaag ttacttcgca gagccaacga acctcagttt cgtcgtcgtg
      601 acataattat cgcgtagctc acaaaggtag cgccttagca ttgtcttggc tttgtaggac
      661 gcggtctcct cgcattgccc attgccatcg agatcgcgaa attttatcgc aattattcta
      721 ttctcgccgg gatcgccttc gacttcaaaa tcgatgcggc cattgtggaa attccaaacc
      781 atctcctctg agccaacgcg aacttcttgg atgcctgatg gttcagattc gcgtcttcga
      841 atcaaatagc gcttccgccg cccagagcga ttctcaattc gcaactctgt gccgtacatt
      901 tctaattcta ctacgtccgg cgaaacttcc ctttgccggt agctccgcct caccacctca
      961 cccaaactac tccatgtcag cggacatttg agagcgttca ggcccttgat aaagtcaatc
     1021 aggcgcgcgc agtggtcact acagtagtcg tgatggatca gcattatcgc gggtttacca
     1081 agcataacat cgaaggcgaa gtttgcgatc ccctcccatg gatacctcct ggtaaagatt
     1141 ggaaagtcac tgtaacccat aactgcaata tcccaaagct ccgaaattgt gactacgcgc
     1201 ggctgtgaat ccgaactaat gacgtcacta ttaacagctg cgattagacc gctatgcttc
     1261 aacgcgctca tggcggcttc cgagaaaata ccttggggga acaccatgac gcgatcgtga
     1321 caaattcccg tgattgattc gtgacgattc attcggtcga gcgcttcccg agtcttccaa
     1381 taaaggcgcc accggtcagc gccgccaaat tctgccttgg tatgatcgca accgtgaacc
     1441 gaaactgagt aattgtcggg gttttcttta aacagccgaa cgacctgtgg agcgcttctt
     1501 cgccagttcc aagggatgaa ggcgatgttc gtggagaact tgtgccgctt catcagagac
     1561 agaagctctt gaaagttgac gaagccatga gttggcttca atacaggatc gtcgatcacc
     1621 aagcaggcgt tagtttccgg agcgttccag caggcgtcgc tgaacgccca ttttatgtaa
     1681 agaacaagag gcacggcgtt gaggaaatgc tctcgaacat caaaattttg cgacgtcagt
     1741 tctgcatcaa tgtcgatgat ctccttagag gtggaaaaaa agacaggcac cccgttgtat
     1801 tcaagcttta agaaagtccc gccatgaccg agcgaaatga tgttgattgt actctctttg
     1861 ggtgtgttga aaatgagact ggtatcaaaa tcagctttcg aagcggcggt tcgcacccct
     1921 gccatcacct tacaaaagtc atccaattga tccgacacgg tgagatctcc gactccggga
     1981 ttgatcttag agattacgat gccgttatct ccggtaagtc tccgtatcag ctttcgtaaa
     2041 atttcggaat catcgccagc gtagacaaac gcggaatgaa cttgctcctc ccagaactgc
     2101 atgaaggctg gatcgcgttc caagtcgttg agcaattgta ggagcgtatc tgaagtggac
     2161 atcaacctac acttagatga gctttcgcga tccgcgccgt tgtgcgccaa aagcttcgtt
     2221 gtggtcaaag cgcgccaagg tacgccaaag aagcccagta tcctggcgat cttcttgcct
     2281 tctatcgata ggccagggtt atctaacaat gtcgcttcct gcttcctcat gacaaaaggt
     2341 gcttagtagt gtcggccagt ccacgaagtc catgaccccg cacaccagcc aaagccttca
     2401 tgaatccaag gatgcaagac gtcgaacgat cgagaagccc aattcttctt ccaatcat
//
LOCUS       DATCGC010001624         1623 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_123923, whole genome shotgun sequence.
ACCESSION   DATCGC010001624 DATCGC010000000
VERSION     DATCGC010001624.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1623
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123923"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..703)
                     /locus_tag="VIJ87_15485"
     CDS             complement(<1..703)
                     /locus_tag="VIJ87_15485"
                     /inference="COORDINATES: protein motif:HMM:NF019126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEY5445836.1"
                     /translation="MRVYGPDKQWIEVLSAYPQTKQIQGKLRDGGLVYVSILDVPPSF
                     RWPQTGEVWSITRDPIDNVTWNLCSRVHGYKALPQNGGIAFTEVEDFDITVMDPGEMR
                     LDSSKIYDDRGMRLAPVDLTDINNGESLVWNDSDQVFKAGAGGGGGMDTGRIGMVMAW
                     TGNTIPTDYVLANGQSLTRAAYPDGYDFAKSQKDGGSTLWDYNAGAGTFVVPDLSNRF
                     IFASGSRTVGTKSQTN"
     gene            complement(704..>1623)
                     /locus_tag="VIJ87_15490"
     CDS             complement(704..>1623)
                     /locus_tag="VIJ87_15490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445837.1"
                     /translation="DPLVAAKTASVFSQLNFPEAVDAAESILLTGGKSLMNDQPLLPF
                     IEQIIKGTMRSFQSLPDGDFLAFYPDYFGTMGTAPYWEIDDIEILEGNIQLTDEALAT
                     HVYVVGATLPNQSIEITRKLETTGVVNILNAGTSDFLNLTQSNPPKITQNPFVRSGVT
                     HALTSAGQEEQKETELQTEYGEDTQPFLGTYQKSVEFLQRYGARPYVQEAPMIRSHVF
                     ETFYAYQQFMLMWARQFQTTFSFTFMPELYPGGLVAFPSHGIQMFIDEVHHSFDYTAG
                     FTTQANLSAPSSMKKNAHPEISRGMVRGW"
BASE COUNT          415 a          399 c          408 g          401 t
ORIGIN      
        1 gattagtctg agacttagta ccgactgtac gagagccgct agcgaaaatg aaacgattac
       61 taaggtctgg aactacgaaa gtgccagccc cggcgttata atcccaaaga gtgctgccgc
      121 cgtccttttg tgacttggcg aaatcatagc catctgggta tgctgcacgg gtaagagact
      181 gaccgttggc tagaacatag tcagtaggga tagtattccc cgtccaagcc atgaccatac
      241 cgatacgacc ggtatccatg cctccaccgc caccagcacc ggctttgaac acctgatctg
      301 agtcattcca aacgaggctc tcaccattgt tgatatctgt cagatcaaca ggagctagac
      361 gcatcccacg gtcgtcataa atcttgctag aatccaggcg catttcgcct gggtccataa
      421 ccgtgatatc aaaatcctca acctctgtga aggcaatacc accgttctgt ggtagagcct
      481 tgtagccatg cacacggcta cagaggttcc atgtaacgtt gtcgattggg tcgcgtgtta
      541 tcgaccaaac ctcgccggtc tgaggccagc ggaagctagg tggcacgtct agaatagaaa
      601 cgtagactaa tccgccatcg cggagtttgc cctgaatctg tttagtctgt ggataagcgg
      661 ataggacttc tatccactgt ttatcaggac cgtatactct catctaccac ccgcgcacca
      721 tgcctctaga gatttcaggg tgggcattct tcttcattga agatggtgcg cttagattag
      781 cctgagtagt aaagccagcg gtgtaatcaa atgagtggtg tacttcgtca ataaacatct
      841 ggataccgtg acttgggaag gctacaagac cacccggata caactccggc atgaaggtaa
      901 atgagaacgt agtctggaac tgacgtgccc acatcagcat gaattgctgg tatgcataga
      961 atgtctcaaa gacgtgagag cggatcatgg gagcctcttg gacatatggc cgcgctccat
     1021 acctctgtaa gaattccacg gacttctgat aggtaccgag gaatggctga gtatcttcgc
     1081 catactctgt ctgtagctca gtttccttct gttcctcttg ccctgcactc gttagagcgt
     1141 gggtgactcc tgatctaaca aaggggttct gagtaatctt aggtggattt gactgtgtga
     1201 ggtttaggaa gtcagaagtg ccagcgttga gaatgttaac cacgccagta gtctccaact
     1261 tacgggtaat ctcaatgctc tgattaggaa gagttgcgcc gaccacataa acatgtgtag
     1321 ccaaagcctc atctgtaagc tgaatgtttc cttcaaggat ttcaatgtcg tctatctccc
     1381 aatatggggc tgtgcccata gtgccaaaat agtctgggta aaatgcgagg aagtctccat
     1441 cggggagact ctggaatgat cgcatcgtgc ccttgataat ctgctcaatg aacggcaaaa
     1501 gaggttggtc gttcataagc gacttgccac ccgtcaagag gattgactct gccgcatcca
     1561 cagcctcggg gaagttcaac tgagagaaca cagaggcggt cttagctgcg accaatgggt
     1621 cta
//
LOCUS       DATCGC010001625         1781 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_191426, whole genome shotgun sequence.
ACCESSION   DATCGC010001625 DATCGC010000000
VERSION     DATCGC010001625.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1781)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1781)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1781
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191426"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(134..979)
                     /locus_tag="VIJ87_15495"
     CDS             complement(134..979)
                     /locus_tag="VIJ87_15495"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF037026.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY5445838.1"
                     /translation="MGIEIRLLGESDLPAALRLKVLAHWNQTENDWRRLIKLEPNGCF
                     CATDNGEVVATTTTTTYGRELAWIGMVLVDPAYRRRGIATRLMDVALEYLTRKGLETI
                     KLDATPDGRLVYKNFGFREESLVERWVGSSSRDMTCVLKESKGMRSQLLALDRDEFGA
                     DRTTLLDQLIEDACLKPCLTTEDSGRLLGYGLARRGTVATYLGPIVAEQPSAAASLLD
                     EMLNQLSEQRVYVDLNTTFDRGRQILKDRGFAKHRDLFRMFYGQEKQASSSPAIFAIA
                     GPEVG"
     gene            complement(984..>1781)
                     /locus_tag="VIJ87_15500"
     CDS             complement(984..>1781)
                     /locus_tag="VIJ87_15500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445839.1"
                     /translation="DIEVEWKLGEYSYTTRRLLEIWEKDGPKGAAMPIEKDFSPTLAG
                     SDRAAETDIILQWLLRVTALIRQAAKPTPITVGLKLFNAVFDDAFQLEMLRAINERCA
                     ADEMPDFLVYGNRLFDPVREFDGVTGVAYGGPDLSDRNLAVLGRMRTLEQNGEIPVCH
                     FPISATGNIVTGRIAAEYLLRGASSFQVHTFFQLPSSEYRMKASGKTARALHELYFNP
                     EEGLLAWLLHLRRAFDWPPNWNVLKMAQFCADPAYRVWVNEPASVLR"
BASE COUNT          444 a          496 c          406 g          435 t
ORIGIN      
        1 cagcggcgga tcccatactc ggtcgcgagt cgtagatgta cacattgagc ttgtctgctt
       61 gaaaggtatc caccagccca tcatttgcat tagctactcc caaagaagat tccatgatta
      121 ctcctgcgta gaattaacca acctctggtc cagcgatagc gaatatcgca ggcgaggaac
      181 tggcctgttt ttcttgtcca taaaacatgc gaaatagatc tcgatgtttt gcaaagcctc
      241 gatccttcag gatctgcctg cctcgatcga aagtcgtgtt cagatcgaca taaacgcgct
      301 gttctgaaag ctgattgagc atttcgtcca agagactcgc agctgcggaa ggttgctcag
      361 ccacaatagg gcccagatac gtcgcaacag ttccgcgtcg agctaaacca tatccgagca
      421 gtcgaccact atcttcagtc gtcaagcaag gtttcaaaca agcgtcttca attaactgat
      481 cgagtagagt cgttctatcg gctccgaact catctcggtc caacgcaagc agttggctgc
      541 gcattccctt tgactctttc aacacacagg tcatatctcg agacgatgac ccaacccaac
      601 gttcaaccaa tgattcttct ctgaaaccaa aattcttata aaccagacga ccgtcaggcg
      661 tggcgtccaa cttgatcgtt tctaaacctt ttctagttaa gtattccaac gcaacatcca
      721 tcaatcgtgt cgctatgcca cgtcgccggt atgcaggatc gacgaggacc attccaatcc
      781 atgcgagttc acgcccgtag gttgtggtgg tcgtcgtcgc cacgacttca ccgttgtcgg
      841 tggcacaaaa acagccgttg ggttcgagtt taattagccg tcgccaatcg ttctcggttt
      901 ggttccaatg agccaacact ttaagccgca aagcagctgg gagatccgat tcaccaagca
      961 gtcgaatttc gatccccata acttcaacgg agcaccgatg ccggttcatt aacccagacg
     1021 cgatacgcag ggtcggcaca gaactgggcc atctttagga cgttccaatt aggaggccag
     1081 tcgaatgctc gacgcaggtg taacagccac gcgagcagtc cttcctcagg attgaaatac
     1141 aattcatgca gagcgcgggc ggtcttgccg ctcgctttca tcctgtactc actgcttggc
     1201 aactggaaaa acgtgtgaac ctggaaactg cttgcgccgc gcaacagata ctctgcggca
     1261 atcctcccgg taacaatgtt gcctgtcgcg cttatcggaa agtggcaaac tggaatctca
     1321 ccgttttgtt caagagttcg cattcttccc aggactgcca gattgcgatc actcaaatca
     1381 ggaccgccat aagcgacgcc tgttactcca tcaaattcac gaacaggatc aaacagtcga
     1441 ttgccgtaaa ccagaaaatc cggcatttca tcagccgcac agcgttcatt tatcgctcgc
     1501 aacatctcta gctgaaatgc gtcgtcgaat actgcgttga acaatttcaa ccctaccgtg
     1561 attggcgttg gtttggctgc ttgacgaatc aatgcagtaa cgcgcaacaa ccattggaga
     1621 ataatgtctg tttcggccgc gcgatcagaa ccagctaatg ttggactaaa gtccttctcg
     1681 ataggcatcg cggcgccctt tggcccatcc ttctcccaga tctcgaggag acggcgcgtc
     1741 gtgtaggagt attctccgag tttccactct acttcgatgt c
//
LOCUS       DATCGC010001626         1842 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_155326, whole genome shotgun sequence.
ACCESSION   DATCGC010001626 DATCGC010000000
VERSION     DATCGC010001626.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1842)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1842)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1842
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155326"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            82..471
                     /locus_tag="VIJ87_15505"
     CDS             82..471
                     /locus_tag="VIJ87_15505"
                     /inference="COORDINATES: protein motif:HMM:TIGR02436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four helix bundle protein"
                     /protein_id="HEY5445840.1"
                     /translation="MKKFPQEKSQSFADQLEDRLINFAVRIIRLAAGLPRTPAGKHVS
                     GQILRSGTSPAPNYGEARGAESRADFIHKIRVVLKELNETSIWLRIIERSQMLDPEVL
                     VDIIQENGELCKIFTSSLQTTRENPTK"
     gene            complement(527..1624)
                     /gene="lpxC"
                     /locus_tag="VIJ87_15510"
     CDS             complement(527..1624)
                     /gene="lpxC"
                     /locus_tag="VIJ87_15510"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: protein motif:HMM:TIGR00325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HEY5445841.1"
                     /translation="MYSSGAVYSNFCSLRHRCELLLFLCKDLLGCSFNTTCRTKTAWF
                     YWDDNRHIGCSYLDRYEQPRENGSHNLIKQTTLKSVVETRGIGLHTAVPVHIRLLPAP
                     PDTGYVFRRTDLGGFELPATVESVAHCGYATTLMRTGVMLSTVEHLLAALRGLAVDNV
                     FIEVDNLEIPIMDGSAENFAEIIERAGIVDQPLARRALLVREKVFFEQGNRRISIEPA
                     DTYQIDCLIDFTHPMIGVQSLSVELSDGAFSREIASARTFGFTDEIEALRRANLIRGG
                     SLENAIVLTPDGMLNQTGLRFRDEFVRHKILDIVGDLALLGMPILGKVVAERSGHILH
                     AGLMSKFLRMRSAWDIVDMPDRKGSITTAEA"
     gene            complement(1655..>1842)
                     /locus_tag="VIJ87_15515"
     CDS             complement(1655..>1842)
                     /locus_tag="VIJ87_15515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445842.1"
                     /translation="VNMNGVLHSEHVISRSGIAVSPREVTRGQSRSLAASEVWRWCFF
                     QPPVVERKRLLSNTAPG"
BASE COUNT          482 a          480 c          434 g          446 t
ORIGIN      
        1 tcatttgaca tttttcagtt gtcatttgct tcctcttcgg tatcatgcac tctaaaattc
       61 tcactttgga gatcctcaca aatgaaaaag tttccgcagg aaaagtctca gtccttcgcc
      121 gatcagcttg aagatcgact aatcaatttt gctgtcagga ttatccgtct cgccgcgggc
      181 cttccccgaa cacctgctgg aaaacatgtg tccgggcaga ttcttcgctc cggaacttcg
      241 cctgctccga actatggaga agcgagagga gccgagagtc gtgctgattt cattcataag
      301 atcagagttg tcctcaaaga attgaatgaa acgtccattt ggcttcgaat aatcgagagg
      361 agtcagatgc ttgacccaga agtacttgtc gatatcattc aggagaatgg tgagctgtgc
      421 aagatattca cttcttcttt acaaaccacg cgggagaatc ctacgaagtg acatccggag
      481 aaattgacaa ctgagaaatg tcaaatgata tatggaaaat gtcttgctag gcctctgcgg
      541 ttgtgattga tcccttgcga tcgggcatat caacaatatc ccacgccgac ctcatgcgca
      601 gaaacttcga catcaatcct gcatgtaaaa tatgtccgct tcgttcagcg acaaccttcc
      661 ccaggatcgg catacctaac aacgccagat caccaacgat gtcgagaatc ttgtgacgta
      721 cgaactcatc gcggaaacgc aatccagtct ggttcagcat tccgtcgggt gtgagcacga
      781 tcgcattttc cagtgatccg ccacgaatca agtttgcccg tcgcagtgct tcaatctcgt
      841 ctgtaaatcc aaaagtcctg gccgatgcaa tttctcgact aaatgctcca tcactgagtt
      901 cgaccgaaag actctgtacc ccaatcatcg ggtgcgtgaa atcgattaaa caatcgatct
      961 gataggtgtc cgcgggttcg atgctaatgc gacgattgcc ttgttcgaag aaaactttct
     1021 cgcgcacaag cagcgcgcgc cgggccaacg gttggtccac aatcccagct cgttcaatga
     1081 tctcagcaaa gttttctgcc gagccatcca tgatcggtat ctcgagatta tcgacttcga
     1141 taaaaacgtt atcgactgcc aatccccgca atgctgccag aaggtgttcc accgttgaaa
     1201 gcatcacacc tgtgcgcatc agggttgtag catagccgca gtgcgcaacg gactcgaccg
     1261 tcgccggcag ttcaaaacca ccgagatcag tgcgacgaaa tacataaccc gtatcaggag
     1321 gagcaggtaa taatcgaatg tgtactggga cagcggtgtg caggccgata ccgcgggttt
     1381 ctaccacgga ctttagagtg gtttgtttga tcaagttgtg tgagccgttt tccctaggtt
     1441 gttcgtaacg gtccaaatag gagcaaccaa tgtgccgatt gtcatcccaa taaaaccagg
     1501 ctgttttcgt cctgcatgtg gtgttaaagc tacaacctaa caagtctttg cagagaaaca
     1561 gcaacaactc acaccggtgt ctcaggctac agaaatttga atagaccgca ccgctggagt
     1621 acactcacga ccaatttaaa cgtatcggag ggctctagcc cggcgcggtg tttgatagta
     1681 ggcgctttcg ctccacaacc ggtggctgaa agaaacacca acgccagacc tccgaagcag
     1741 caagagagcg tgactgtcct cgggtcacct ctcgtggaga aaccgcgatg ccagaccttg
     1801 aaatcacgtg ttcggagtgc agcactccgt tcatgttcac gg
//
LOCUS       DATCGC010001627         2669 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_421603, whole genome shotgun sequence.
ACCESSION   DATCGC010001627 DATCGC010000000
VERSION     DATCGC010001627.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2669
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_421603"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2246
                     /locus_tag="VIJ87_15520"
     CDS             <1..2246
                     /locus_tag="VIJ87_15520"
                     /inference="COORDINATES: protein motif:HMM:NF028476.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="protein ndvB"
                     /protein_id="HEY5445843.1"
                     /translation="DPSSEAIYLRDEDSRTVWTTTALPIRESEPYIVRHGQGYSVFEH
                     TSHGLSQELLVFSPLDSEVKISLLRIRNRMARKRRISVTSYNELVLGSQRSSSAPYVI
                     TEIEEQSSTIFAHNPFNNEFAERVAFVSTSESLSSATCDRREFIGRNGSLDKPAALRR
                     IGLANRDGAGLDPCAALQVQIELAPNEAREVIFIIGQAGSREAASKIVASFRQPGVVN
                     ESFEKVLSHWDEVLGTVEVKTPDAALDTMLNRWLLYQSLSCRVWARTAFYQSGGAYGF
                     RDQLQDVMSLVYSKPQVAREQIVLASHHQFKEGDVQHWWHPPSGRGVRTRISDDLLWL
                     PFVVSFYIDVTGDSSVLNEVVPFLEQPLLQDGEQDRYMQPAVSNESADIFDHCIRAID
                     RSLGVGIHGLPLMGGGDWNDGMNRVGQLGKGESVWLGWFLYTTLAAFLPVVDARQQPD
                     RAERYRRHMTKLKKTLEEHAWDGDWYRRGYFDDGTPLGSSQNEECRIDSIAQSWSVIS
                     GASDNYRMSRAMAAVEEYLIRRGDGLVILFTPPFDKGHLDPGYIKGYVPGVRENGGQY
                     THAAIWTLIAFSMLGDGERAGELFSLLNPINHSSTRAGLHKYKVEPYVAVGDVYAVPP
                     HTGRGGWTWYTGSAGWMYRAGLESILGFKLHGDKLTIDPCVPRWWRDFGITYRRGRAV
                     YDIKVENPLGISKGVASVELDGEVLKGIEIQLTDDAGQHTVRIVMGEPVKTPEPEGKQ
                     AEHQTSN"
     gene            complement(2323..>2669)
                     /locus_tag="VIJ87_15525"
     CDS             complement(2323..>2669)
                     /locus_tag="VIJ87_15525"
                     /inference="COORDINATES: protein motif:HMM:NF013841.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEY5445844.1"
                     /translation="FEKKGYIVVEKAAKSEDELFELAIEAGADDLRSDDDNFEILTAP
                     DSFDAVLTAVKDAGIEPQAAEVGMIPQNYIKLEGADARQMLKLMEALEDHDDVQKVSA
                     NFDISEADMAAA"
BASE COUNT          642 a          679 c          719 g          629 t
ORIGIN      
        1 gcgatccctc aagcgaagca atctatcttc gggacgagga ctcacgcact gtttggacaa
       61 caaccgcctt accaattcgc gagagcgagc catacattgt tcgtcatggc cagggctaca
      121 gtgttttcga gcacaccagt catggattat cccaggagct gctggtgttt tcaccactcg
      181 attctgaagt aaagatctca ctgctcagaa tacgaaatcg gatggccaga aaaagaagaa
      241 tctccgtgac ttcttacaat gaactcgttc tgggtagcca gcgttcatcg tccgcgccat
      301 atgtgattac tgagatcgag gaacaatcat cgacgatttt cgctcataac cctttcaaca
      361 atgaatttgc cgagcgggtt gcgtttgttt ccactagtga aagcctttcg agtgccactt
      421 gcgatcgcag ggagttcatt ggtcgcaatg gttctctaga caaaccggcc gccctgcggc
      481 gaatcggtct ggcaaatcgc gacggagctg gactcgatcc gtgcgccgca ttgcaggtac
      541 agatcgaact ggcaccgaac gaagcacgcg aagtcatctt cattattggt caagcaggat
      601 cgcgagaagc cgccagcaag atcgttgctt catttcgaca accaggtgtt gtaaacgagt
      661 cgtttgagaa agtgctgtca cactgggatg aggtacttgg aaccgttgaa gtaaaaacgc
      721 ccgacgcggc actcgacaca atgcttaacc gctggttgct gtaccagagt ctgtcttgtc
      781 gcgtttgggc acgcacggcg ttctatcaat ccggcggtgc ttatgggttt cgagatcaac
      841 tgcaagacgt gatgtcgctg gtctacagca agccgcaggt cgctcgcgag caaattgttc
      901 ttgcgagtca tcaccagttc aaggaaggcg atgttcagca ttggtggcac ccgccaagtg
      961 gacgcggtgt tcgcacacga atttccgacg acctcttgtg gcttccgttc gtcgtcagtt
     1021 tctacatcga tgttaccggc gattcgtctg tgctcaatga agtggtgccc tttctcgaac
     1081 agccgctcct ccaggacgga gaacaagacc ggtacatgca gcctgctgtt tccaatgaat
     1141 ccgctgacat cttcgaccac tgtatccggg cgatagatcg cagtcttggt gttggaatac
     1201 atggattgcc gttgatgggt ggtggcgatt ggaacgatgg aatgaatcgg gtgggtcaac
     1261 taggaaaggg tgaaagcgtt tggctgggct ggtttttgta cacgacgctc gcggccttcc
     1321 tacccgtagt tgatgcgcga caacaaccag accgagctga gcgctatcga cgccacatga
     1381 ccaagttgaa gaaaacactc gaggaacacg catgggatgg cgactggtat agacgcggat
     1441 acttcgatga tggaacaccg ctcggctcgt cgcagaacga agagtgtcgg atagactcaa
     1501 tcgcacaatc gtggtctgtc atctcgggag catcagacaa ctaccgaatg agtcgggcga
     1561 tggccgccgt ggaggagtac ttaattcgac gcggtgacgg attggtaatt ctgttcactc
     1621 caccgttcga caaaggccat ctcgatccgg gttacataaa aggctacgtc ccgggtgtgc
     1681 gcgaaaatgg cggacaatac acacacgctg cgatttggac tttgattgcg ttttcaatgc
     1741 tgggcgatgg tgagcgagca ggtgaactgt tttcgttgct gaatccaatc aatcactcat
     1801 caacgcgtgc cggattacac aagtacaaag tcgagcccta tgttgcagtc ggcgacgttt
     1861 atgcagtacc gccacatact ggacgcggcg gctggacatg gtacacgggc tcagcgggtt
     1921 ggatgtatcg agcgggattg gaatcgattc tcggattcaa actacacggt gacaagttga
     1981 cgatcgatcc atgcgtaccg cgttggtggc gcgactttgg aattacatat cgccgtggtc
     2041 gtgcggtcta tgacatcaaa gtcgagaatc cactggggat cagcaaggga gttgcgagtg
     2101 ttgaattaga tggtgaagtt ctgaagggca tcgaaattca actgacggac gacgcaggcc
     2161 agcatacggt tagaatcgtg atgggcgaac ccgtgaaaac tcccgaaccg gaaggcaaac
     2221 aagccgaaca ccaaacttcc aactagacgc accgtaaaca caaatgacac ggaccaggtc
     2281 aattcctgat ccgtgtcatt agtgtaaatc cgtggttaat cgttacgcgg cagccatgtc
     2341 ggcttcgctg atatcgaagt tggctgacac cttttgcacg tcgtcgtgat cctcaagcgc
     2401 ttccatcaat ttcaacatct gcctcgcatc ggcgccttca agcttgatgt agttttgcgg
     2461 aatcattccg acctcggcag cctgcggttc gatacccgca tctttgacag cggttagcac
     2521 cgcgtcgaat gaatcgggtg ccgtaagaat ttcaaagttg tcgtcatcac tacgaagatc
     2581 atcggcgccg gcctcaatcg ctaattcaaa caactcatct tccgacttcg ctgctttttc
     2641 gacaacgatg tagcccttct tttcaaaca
//
LOCUS       DATCGC010001628         1247 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_191449, whole genome shotgun sequence.
ACCESSION   DATCGC010001628 DATCGC010000000
VERSION     DATCGC010001628.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1247)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1247)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1247
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191449"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1247
                     /locus_tag="VIJ87_15530"
     CDS             <1..>1247
                     /locus_tag="VIJ87_15530"
                     /inference="COORDINATES: protein motif:HMM:NF015140.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007154 - cell communication [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Calx-beta domain-containing protein"
                     /protein_id="HEY5445845.1"
                     /translation="ADNGGFSIVKQSSGTYTGDIQVDQRTGVISINNATPAGTHTITI
                     RATDNCGATTDTSFTLTVGKANQTITFGALANKNVGDPDFSVNATATSGLPVSFAASG
                     QCTVNTNTVHITGVGSCAITASQAGDGNFNPAPNVQQSFTIVSSANSSLISLSQDNFN
                     VNESTGFVTVVVNRTGDLSNPVSVDYATDDTGSSNICSALNSGLASSRCDFGLTLGTL
                     LFAPNDTQKTFIIPITQDSFTEGPETFTVNLSNLNGNGTNFGARSSATVTIADGTTQL
                     PPNASDDTEAFVRQQYHDFLNREADPAGLAFWTGEINNCTPKPQCTQLKRINVSAAFF
                     LSIEFQTTGNLVRNFYVAALDRPATNNMPAFVEFERDTQAIQRGVIVDPSNDAFQTVL
                     NNNRDAFMRDFVTRAEFVVLYPT"
BASE COUNT          315 a          349 c          311 g          272 t
ORIGIN      
        1 tgcagacaat ggagggttct ccatcgtcaa gcaatcgagc gggacatata caggcgacat
       61 acaagtagat caaagaactg gagtcatctc catcaacaat gctacgcctg caggcacgca
      121 tacgatcaca atccgcgcga cagacaactg cggagccact accgacacta gcttcacgct
      181 gactgtgggc aaagccaacc agacgatcac gtttggtgcc ttagcgaata agaacgtcgg
      241 cgatccggat ttctcagtca acgcaacggc aacttcaggc ttaccggtta gctttgccgc
      301 cagcggtcaa tgcacggtga acaccaacac agtgcacatc accggcgtcg gatcttgtgc
      361 gattaccgct tcgcaagcgg gtgatggcaa cttcaacccg gctcccaacg tgcagcaaag
      421 cttcacgatt gtaagcagtg caaatagctc cctgatctct ttaagccaag acaacttcaa
      481 cgtaaacgaa agcacgggat tcgtgactgt tgtagtcaat cgtacgggcg acctttcaaa
      541 tcccgtcagc gttgactacg ccaccgacga cactggctcg tctaacatct gcagcgcact
      601 aaatagtggg ctggcatcgt cgcgttgcga ttttggtttg acgttgggca cgttgctctt
      661 cgcacccaat gacactcaaa agactttcat cattccgatt actcaggact cttttacaga
      721 aggccctgag acgtttacgg tgaatctgtc taacctcaat ggcaacggca caaatttcgg
      781 ggcgcgttcg agtgccacgg tgaccattgc tgatggaacg actcagttgc cgcccaacgc
      841 cagcgacgac accgaggcct tcgtgcgtca gcagtatcat gattttctga atcgcgaagc
      901 tgaccccgcc ggcctcgcgt tctggactgg tgaaatcaat aactgcacac ccaaaccaca
      961 gtgtacgcag ctaaaacgaa tcaacgtttc agcggccttc tttctttcca tcgagtttca
     1021 gacgacaggg aatctcgtgc gcaacttcta cgtggcagct ttggatcgac cggcgaccaa
     1081 caatatgccc gcgtttgtag agttcgagcg cgacacccag gcaatacaac gtggagtgat
     1141 agtcgacccg agcaacgatg cgttccagac ggtgttgaac aacaatcgtg atgcgttcat
     1201 gagggacttt gtcacgcggg cagagtttgt tgtgttgtat ccgacga
//
LOCUS       DATCGC010001629         2000 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_325264, whole genome shotgun sequence.
ACCESSION   DATCGC010001629 DATCGC010000000
VERSION     DATCGC010001629.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2000
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325264"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..963)
                     /locus_tag="VIJ87_15535"
     CDS             complement(<1..963)
                     /locus_tag="VIJ87_15535"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF013827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEY5445846.1"
                     /translation="MLCGKSITLVSLYVLSENSSNSNTAGRPTLCRNCASIVGAGESN
                     CAVCGTSTVVPPPKQERLAPPDRETLRFARAILDRPYKFTITFLIANLFLFLLMWDSS
                     GISGIGLLQDFPIQVLVAYGAKVNGLIAAPNYQWWRFVTPMFLHVNLIHLLVNMYSLW
                     MIGPYVEKLYGSAKFVVFWVLTGIAGVVASYLTVRPGLATNSLARFIFKAFDEPSAGA
                     SGALFGLVGVLFVFGIKFRHELPEGFKRAFGTGLVPIILLNLVIGFIGRRSIDNAAHL
                     GGLLSGAAIALLVQYRRPGENQGSTIFWRALQVAALGLLVFSFFK"
     gene            complement(1003..1539)
                     /locus_tag="VIJ87_15540"
     CDS             complement(1003..1539)
                     /locus_tag="VIJ87_15540"
                     /inference="COORDINATES: protein motif:HMM:NF012436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEY5445847.1"
                     /translation="MADKPFLTDIKTLRERARKHIENGAVTEGYSADLGTAVRILNEA
                     LATELVCVLRYRRHYFMATGINAESVAAEFLQHANEEQGHADLIAQRIVQLKGEPNFS
                     PDGLLTRSHAEYVEGDSLLDMIKEDLVAERIAIDSYREMITYFGNDDPTSRRMLEGIL
                     AMEEEHADDLVSLLEVMG"
BASE COUNT          533 a          498 c          479 g          490 t
ORIGIN      
        1 tttgaaaaaa ctgaaaacca gtaagcccag tgctgcaact tgcagagctc gccagaaaat
       61 cgtacttccc tgattttcac ccggccgtcg atattgcact aacaacgcga ttgccgctcc
      121 tgacagcaac ccacccaggt gagcagcatt gtcgatggac cggcgtccaa tgaaaccgat
      181 aacgagattc agaaggatta tcggaaccag tccggtgcca aacgcacgct tgaaaccttc
      241 cggtagttcg tgacgaaact ttatgccgaa gacaaacagc acaccaacta aaccaaacaa
      301 agcgcccgaa gcccccgcag aaggctcgtc aaaggctttg aaaatgaagc gagccaacga
      361 atttgtcgcc aagcctggcc gcaccgttaa gtagctggct acaactccag caattccggt
      421 cagcacccaa aacacgacga actttgcaga gccgtaaagc ttctccacgt atggcccaat
      481 catccagagg ctatacatgt tgaccagcag atggatcaaa ttgacgtgaa gaaacatcgg
      541 agtaacaaat cgccaccatt ggtagtttgg cgccgcgatt agtccattca ccttggcacc
      601 gtaggccacc agtacctgaa tgggaaagtc ttgcagtaaa ccgattcctg aaataccgct
      661 tgaatcccac atcagtagaa ataaaaacaa gttggcgatc agaaaggtga tcgtaaactt
      721 ataaggacga tccagaatgg cccttgcgaa acgcaaggtc tcgcgatcgg gaggcgctag
      781 tctttcctgc tttggtggtg gaactacggt tgaggtaccg caaaccgcac aattagactc
      841 acccgcgccc actattgatg cacaattacg acagagagtc gggcggcctg cggtgtttga
      901 gtttgacgaa ttttcagaca atacgtagag actaacaagc gtgatgcttt tgccgcaaag
      961 catcacgctt cagttttctg atttgagtta tggagcggcg ctttagccca tgacttcgag
     1021 aagactaact aaatcgtcgg cgtgctcctc ttccatggcc agaattcctt cgagcatgcg
     1081 tcgagaggtt ggatcgtcgt ttccgaaata agtgatcatt tcacgatagc tgtcgatcgc
     1141 gatacgttcg gccaccaggt cttccttgat catatcgagc agagaatcgc cttcgacata
     1201 ctctgcgtga ctacgcgtca acagaccatc gggactaaaa tttggctcac cctttagctg
     1261 aacaatgcgt tgagcaatta gatccgcatg gccctgttct tcgttggcgt gttgcagaaa
     1321 ttcggcggca acgctttcag cattaatgcc ggtggccatg aaataatgcc gtctgtatct
     1381 aagcacgcag accaactcgg ttgcgagcgc ttcatttaag attctgaccg ctgtccccag
     1441 atcagcggag taaccttcag taacggctcc gttttcaatg tgtttacgtg cgcgttcgcg
     1501 cagagtttta atgtcagtga gaaatggttt atccgccacg gcactcactc cttaaatcaa
     1561 attttggggg tgcaaggata ttactcgccg attgaagggc tagcaagctg gggtaagaag
     1621 atcattggtc atttctcatt tgacatttct cagttgtcat ttgattgacg ttgcaaactc
     1681 gattgattga gttgcgactt caactctagt gacttctata aaactatttc gacgatagag
     1741 ctatttcgac gcagttactg tctaggtcta tattgaagcg gtacagtcta gatctatacc
     1801 gacgaagtcg gaccctaaat tggttccgtc cgggaggttt gagatagaag tcgaactaga
     1861 atggctgggc tgtcgtaagg agtttcaacg gttaggcagt tcccacccaa gacacgcgag
     1921 gtttacaaaa tgtattgccc acaatgcggt caagttcaaa ccggtgatgt tcgttattgt
     1981 tcacgttgcg gcctgtctct
//
LOCUS       DATCGC010001630         1839 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_57433, whole genome shotgun sequence.
ACCESSION   DATCGC010001630 DATCGC010000000
VERSION     DATCGC010001630.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1839)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1839)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1839
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57433"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1640)
                     /locus_tag="VIJ87_15545"
     CDS             complement(<1..1640)
                     /locus_tag="VIJ87_15545"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HEY5445848.1"
                     /translation="MKRFVLLVSLLLLCLAPSATAQKRTYTIEDLMKVRRVGDPQISP
                     DGNRVAFTIGDINYDANRVVTQIYVVSLEGGSPKQLTNGPSSSSAPRWSPDGKKIAFV
                     TGSQVWTMESDGDNKDQVTKISTGAAAPVWSPDGKWIAFSSEVYPDCSNDDCNKKKDE
                     EAEANKVKAHITSRLLFKHWDEWRDVKRTHVFVVSSKGGAARDMTPGDFDSPPYAASS
                     GVDYAFSPDSQEIAYLRNPDKVEATSTNSDIYVMPLAGGQPKNITANNHGYDASPKYT
                     RDGRAIIYRSQATPGFEADRWRLMSYNRASGVSTEITKRFDQQVEEVALSPDGNYAYF
                     TAGDRGKSPIFRVPLGGAEAQKIVPDVFASSLGITSNGKKLVFVGSSNASPAEIYTAN
                     LDGSGVTALTSANIQLMNQANLKAAENIEWTGALGRKVHGFIVKPNNFDASKKYPLVV
                     LIHGGPQSAWYDNWGYRWNPQVFANAGYVVFTPNPRGSTSYGQQFINEISGDWGGKAY
                     VDIMNGVADVLRRSPYIDRNRIGAAGASYGGYMINWIEG"
BASE COUNT          411 a          474 c          493 g          461 t
ORIGIN      
        1 ccttcaatcc aattgatcat gtagccgcca tagcttgcac ccgctgcacc gatgcgattg
       61 cgatcgatgt acggactgcg cctaagcaca tcggcaacac cattcatgat gtcaacgtag
      121 gctttgccgc cccagtcgcc actaatctcg tttataaact gctgtccgta actggttgaa
      181 ccacgcgggt tcggcgtgaa cactacgtat cccgcattgg cgaaaacttg tgggttccat
      241 cgatagcccc agttgtcata ccacgcgctc tgtggaccgc catgaataag aacaacgagt
      301 ggatactttt tgctggcgtc gaagttgttt ggtttgacga tgaaaccatg aaccttcctg
      361 ccgagagcgc cagtccactc gatattctca gcagctttca gatttgcctg gttcattaac
      421 tgaatgtttg ctgaagtcaa cgcggtcaca ccactgccgt cgagatttgc agtatagatc
      481 tcggcgggcg aggcattcga actgccaacg aagaccagct tcttgccgtt tgaagtgatt
      541 ccaaggctac tggcgaaaac atctggaacg attttctgcg cttctgcacc gccgagaggt
      601 acacggaaga ttggcgactt ccctcgatcg ccagcggtga agtatgcata gttaccgtca
      661 ggtgaaagtg caacttcttc aacttgctga tcaaatcgct ttgtgatttc cgtgctgaca
      721 ccgcttgctc ggttgtaaga catcaaacgc cagcggtctg cttcgaaacc tggtgttgct
      781 tgtgagcgat agatgatcgc acgaccatca cgggtgtatt ttgggctggc atcgtagcca
      841 tgattgttgg cggtgatgtt ctttggttga ccacccgcaa gtggcatcac atagatgtcg
      901 ctgttcgttg aggtagcctc gactttgtcc ggattcctaa ggtaggcaat ttcctgggag
      961 tctggtgaga aggcgtagtc gacaccagag gacgcggcgt agggcggtga atcgaaatca
     1021 ccaggtgtca tatctcgagc agcgccacct ttactagaaa cgacgaatac gtgcgtgcgc
     1081 ttcacgtcgc gccattcatc ccaatgtttg aagagcagac gactggtgat gtgtgccttg
     1141 accttgttgg cttcggcttc ttcgtccttc ttcttattgc aatcgtcgtt cgagcaatcg
     1201 ggatagactt ctgatgagaa cgcgatccac ttcccatctg gcgaccaaac aggtgccgcc
     1261 gctcccgtcg atatttttgt tacctggtct ttgttgtcgc catcgctctc catcgtccag
     1321 acctgactgc ctgtgacaaa agcgatcttc ttgccgtccg gtgaccagcg aggcgctgat
     1381 gacgaactag gtccgttagt gagttgctta gggctgccgc cttcgagtga aacgacgtag
     1441 atctgggtga cgacacggtt ggcgtcgtag ttaatgtcgc cgattgtgaa ggccactcta
     1501 tttccgtcgg gtgaaatctg cgggtcgccg acgcgtcgta ctttcatcaa atcttcaatc
     1561 gtatacgtgc gcttttgagc cgttgcgctg ggagccaaac agagcagaag aagagaaaca
     1621 agaagaacaa atcgcttcat agaaaattcc tcgaatagtg gatttgaaac tagttgggaa
     1681 agcctggtca ttattacatc aacgcccacg gatagcgaaa caggaggcag gagcaggagg
     1741 cagtaagcag taagcaggag gcgggcgcag gaggcaggag aagagcgatg cgcgtctcgg
     1801 ttctgcctac tgctcctgcc tcctgcctac tgcctcctg
//
LOCUS       DATCGC010001631         1356 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_421617, whole genome shotgun sequence.
ACCESSION   DATCGC010001631 DATCGC010000000
VERSION     DATCGC010001631.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1356)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1356)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1356
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_421617"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..351)
                     /locus_tag="VIJ87_15550"
     CDS             complement(<1..351)
                     /locus_tag="VIJ87_15550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445849.1"
                     /translation="MKAILFRFTALVISLVIVALFGEVTLRLCAPRPEEDEKDRFCRF
                     DHELGWAPLESVTYAKKGVLVHQNQFGLRAPDDIQLKNTSGRKRVLVLGDSFVWGFGS
                     TQEELITARQVYRTD"
     gene            complement(610..1020)
                     /locus_tag="VIJ87_15555"
     CDS             complement(610..1020)
                     /locus_tag="VIJ87_15555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445850.1"
                     /translation="MPSLIRKLFHKSEAPNDGLIQPQREAIVDLLNYCMYADNLVMLA
                     EDRLIADTVAKFKWDPKAVPFDQFDARSVGNARNARESQVYRDKFLGSISDRLSTDAV
                     KAQALDLCQELFLADGARSDEEDVVLQHLRQLLE"
     gene            complement(1055..>1356)
                     /locus_tag="VIJ87_15560"
     CDS             complement(1055..>1356)
                     /locus_tag="VIJ87_15560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445851.1"
                     /translation="CVRPIAVATSLCDVFPATHAACDFKHWLRLLAQRTFVRLPLHRP
                     NGANWMSDIEGKMTRAGASERGQRTSFKIVCCNFCKGLFLEAALRWKEYGKEVAL"
BASE COUNT          304 a          380 c          327 g          345 t
ORIGIN      
        1 atctgtccga tacacttgcc gagcagtgat gagttcctcc tgagtcgagc cgaaacccca
       61 gacgaacgaa tcgcccagca ccaacactcg ctttctcccg gatgtgttct tgagttggat
      121 atcatctggg gcgcgcagcc cgaactgatt ttgatgcaca agaactcctt ttttggcata
      181 ggtgacgctc tccagcgggg cccagcccaa ctcatgatca aagcgacaaa aacggtcttt
      241 ttcgtcctcc tccgggcgcg gtgcgcacaa tctcaacgtg acttcaccaa acagcgccac
      301 gattaccaaa ctgattacga gcgcggtaaa tcgaaacaga atcgctttca taattgggtc
      361 ttgtaaagac acgcaaagcc gagcggggct tcgagaggcg aagagatttg agatttgatt
      421 tctgattgcg gactgcggtt cctcagccgt ttggcctgac cactgcgctg attcggaact
      481 ggtcgttctt atttttcaac aggatgtcgg atgtatgatt tcagatttca aattttcgaa
      541 actctctgcc tgctgctttt tcagtcttcc gcgctgaagc ccggcttcaa cggccgggaa
      601 taaccacttc tattcgagca gctgcctcag atgttgaagc acgacgtctt cttcgtcaga
      661 gcgcgcgcca tcggcgagaa agagctcctg gcacaggtcc aatgcttgtg cctttactgc
      721 atcggtacta agcctatcgc tgatcgaacc caggaattta tctctgtaca cctgactttc
      781 tctcgcgtta cgtgcgttac caaccgatct cgcgtcgaac tgatcgaacg gtactgcttt
      841 cgggtcccac ttgaacttcg cgaccgtatc ggcaatcaac ctgtcctctg cgagcatgac
      901 caagttgtca gcgtacatgc aatagtttag caagtcgacg atcgcctcgc gctggggctg
      961 gatgaggccg tcattcggcg cttccgattt atggaacagt tttctaatta gactaggcat
     1021 aaagtgtatt gactgattct tcttcgattg caggtcataa agctacttct ttcccgtatt
     1081 ccttccaacg caacgcggcc tccagaaata gccctttgca aaagttacag caaactattt
     1141 tgaaactcgt tcgctgcccg cgctcactcg ctcctgccct cgtcattttg ccttctatgt
     1201 cgctcatcca attcgctcca ttcgggcgat gtaatggcaa acgaacaaac gtccgctgcg
     1261 ccaggagtcg aagccaatgt ttgaagtcgc aggcggcgtg cgttgccggg aagacgtcgc
     1321 acagcgacgt ggctacagcg atcggtcgaa cgcaga
//
LOCUS       DATCGC010001632         1857 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_155373, whole genome shotgun sequence.
ACCESSION   DATCGC010001632 DATCGC010000000
VERSION     DATCGC010001632.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1857)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1857)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1857
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155373"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..689
                     /locus_tag="VIJ87_15565"
     CDS             <1..689
                     /locus_tag="VIJ87_15565"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEY5445852.1"
                     /translation="AAGGGGGGREEAKPASFGKVPQASLDIPQVVAPDPKPPQIKNPS
                     LPVAATVVADPMLVPPDARVLPYGDYKSKSTDPSSGSGTGNGIGTGQGGGIGPGEGGG
                     LGPGRGGNIGGGDFNAGGGGPGGGGGGDYSKIFTGKEVTSKARLISKPEPQYTEEARK
                     NQITGTVVLKVVFASSGQVTNIRTVSGLPNGLTERAIAAARLIKFVPATKDGHQVSMW
                     MQLEYNFNLY"
     gene            complement(775..>1857)
                     /locus_tag="VIJ87_15570"
     CDS             complement(775..>1857)
                     /locus_tag="VIJ87_15570"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEY5445853.1"
                     /translation="VVDFGAGEPDFDTPDNIKAAAAEAMRVGRTKYTSTGGTRELQKA
                     IINFYQREFQVEYQPSEVMGTSGGKQAIFNAVVTLLDQDDECLIPKPYWVTFPEIVVF
                     AGAKPVFIETEETDFVVTAEQVRQAITPRTKLLILNSPSNPSGRVLPPSEFRRIMELT
                     AERDIYVISDECYLRFVYPPAEIFSAATLPAELRSKLCIAGSFSKTYAMTGWRLGYSL
                     GPAEWIKAMLKVQGHCTSNPNSIAQWAAVEAFNGPQDSVGVMLGEYTRRRAWLLDALK
                     GIPGIKCAEPEGAFYAFPDVRGCLTKELKTSAEFAQRLLEEEQTVVTEGAAFGAEGFV
                     RMSYATSMAQLEEGVKRMKRFAEKYA"
BASE COUNT          446 a          490 c          484 g          437 t
ORIGIN      
        1 gtgcggcagg cggcggaggt ggtggacgtg aagaagcgaa accagcgtcg tttggtaaag
       61 ttccgcaggc ctctttagac atcccgcaag ttgtggctcc agatccgaag ccaccgcaaa
      121 tcaagaatcc ttcgttgcca gtagcagcta cagtggttgc tgatccgatg ttagtaccac
      181 cggatgcgcg agttttgcca tacggtgact acaagtcgaa gagcactgac ccttcgtccg
      241 gttcaggtac tggaaatgga atcggaactg gccaaggtgg cggtatcgga cctggtgaag
      301 gtggcggtct gggaccagga cgtggtggaa atatcggcgg cggtgacttc aacgccggtg
      361 gcggtggacc cggtggtggc ggcggtggag attactccaa aatctttacg ggtaaggaag
      421 tgacttccaa agcgcggcta atctcgaagc ctgaaccgca atacactgag gaagcaagga
      481 aaaatcagat cacaggcacc gtggttttga aggtagtgtt tgcttcgtct ggtcaggtaa
      541 ctaacattcg cacagtttcg ggcttgccaa atggattgac cgaacgtgcc atcgcagctg
      601 ccaggctgat caagtttgtc ccggcaacca aagatggcca ccaggtctca atgtggatgc
      661 agctcgagta caacttcaat ctgtactaat gtccgataag ctttagcttg tcgttgagta
      721 aaataaaaaa ggcgccggaa attcttccag cgccttttat cttttgggaa accactaagc
      781 gtacttctca gcgaatctct tcatccgttt gacgccttct tctaactgcg ccattgacgt
      841 cgcatacgac atgcgcacaa aaccttctgc gccaaacgct gctccttcag ttaccactgt
      901 ctgttcctcc tccagtaacc tctgggcaaa ttcagccgaa gtcttcagct cctttgtcag
      961 acaaccacgc acatccggaa acgcataaaa cgctccttca ggttcggcac acttaattcc
     1021 tggtattcct ttgagcgcgt ccagcaacca cgctcgacgt cgcgtgtact cacccaacat
     1081 cactccaacc gaatcctgag gtccattgaa cgcctcaaca gcagcccact gcgctattga
     1141 gtttggatta gacgtgcaat gaccctggac cttcagcatt gctttgatcc attcagcagg
     1201 tcctagcgag taacccaaac gccacccagt catcgcgtaa gtcttggaga atgatccagc
     1261 aatgcagagt ttggaacgaa gctccgcagg cagagtggct gcgctaaata tttctgccgg
     1321 cgggtagaca aagcggagat aacactcatc cgagatgacg tagatgtcgc gctctgcggt
     1381 cagctccatg atgcgccgga attcggatgg cggtaacacg cgtcccgatg gattcgacgg
     1441 cgagttaaga atgagtagct tcgttcgcgg cgtaattgcc tgcctgactt gttcggcagt
     1501 aaccacaaag tcagtctctt ccgtttcaat gaagacgggc ttcgcaccag caaacacaac
     1561 aatctcagga aatgtcaccc aatatggctt gggaattaga cactcatcgt cttggtcaag
     1621 cagggtgaca acggcattaa agatagcttg cttaccacca gacgttccca ttacttctga
     1681 cggttgatac tcaacctgaa actctcgctg gtagaaattg atgattgctt tctggagttc
     1741 acgcgttccg ccggttgagg tgtattttgt ccggccgact cgcattgctt cggccgcggc
     1801 tgctttgatg ttatcgggtg tgtcgaagtc aggttcgccg gcgccaaaat caacgac
//
LOCUS       DATCGC010001633         1425 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_26901, whole genome shotgun sequence.
ACCESSION   DATCGC010001633 DATCGC010000000
VERSION     DATCGC010001633.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1425)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1425)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1425
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26901"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..228
                     /locus_tag="VIJ87_15575"
     CDS             <1..228
                     /locus_tag="VIJ87_15575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445854.1"
                     /translation="GLGPEANDVENAAHAAAAGVLRASFINYDVALDAYAARSDVESL
                     ARKNARDQPNDFKDASFMRTVSGAAGSGSSA"
     gene            324..545
                     /locus_tag="VIJ87_15580"
     CDS             324..545
                     /locus_tag="VIJ87_15580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445855.1"
                     /translation="MQLNISEAHRLVRTQRARGVDAFWDGYTIVFFNPQAKAIYSKKG
                     IYRNGKWGYANRFPVGDDGTWKVDKRNVR"
     gene            815..1084
                     /locus_tag="VIJ87_15585"
     CDS             815..1084
                     /locus_tag="VIJ87_15585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445856.1"
                     /translation="MASLYSGGPPSLYDLVGDYIRTRPWPRGFDYDVYENDQTLTFVM
                     FQDNIDSFSGDAKEQLKVLLMGLAELNKNGIPIRPVVKPSRRDSA"
     gene            1201..>1425
                     /locus_tag="VIJ87_15590"
     CDS             1201..>1425
                     /locus_tag="VIJ87_15590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445857.1"
                     /translation="MTNTKLLETMTTTMTETTGQVTMTCTVCQKHKAQLHRRKSALKP
                     DLEMFVCGACMIGKKEPRWLVILVGRRDGIQ"
BASE COUNT          372 a          334 c          386 g          333 t
ORIGIN      
        1 ggcctcggtc ctgaggccaa cgacgttgaa aacgccgcgc acgccgctgc cgctggcgta
       61 ctacgggctt ctttcattaa ctatgatgtt gctctggacg catacgcagc acgttccgat
      121 gttgaatcgt tggctcgcaa gaatgcgcgt gaccagccta acgacttcaa ggacgcatca
      181 tttatgcgta ctgtaagtgg agccgctggc tcaggttcat ccgcctgata atcgcgtagc
      241 accaaacata gggagggacg gtaacttgtt accgtccctc ccgcatcccc gcctagaatg
      301 actataactg gaaaggctat gtcatgcagt tgaacattag tgaggcgcac cgcctcgttc
      361 gtacccagcg cgctcgtgga gttgacgcct tttgggacgg gtacaccatt gttttcttta
      421 accctcaagc caaggctatt tattcgaaga agggtatcta ccgtaatggc aagtggggat
      481 acgccaaccg gttcccggtg ggcgacgacg gaacctggaa agtagataag cgaaatgtca
      541 gatgagccaa cagaggtacg ttggcaagat tactccctgt gccagcactt cacccccggc
      601 atgtggtttg aggaatacga gaccgaccct cgcacggcta aggtagccga ttcaatatgt
      661 ttatcctgtc ctgtgagagc cccgtgctat caggccgggg tcgagggcgg ggaatatgga
      721 acatggggtg gagtgttctt gaataatggg aagatagacc cacagaagaa cgagcataaa
      781 acaccagata tctggaagca gattagggca gacattggct agtttatata gtggtgggcc
      841 accttcgtta tatgaccttg tgggtgatta cattcgtacc cgcccctggc ccagaggttt
      901 tgactatgat gtgtacgaga atgaccaaac gttgacgttt gtaatgttcc aggacaacat
      961 tgattcattc agtggtgacg caaaggaaca actaaaagtt ctgctcatgg gcctggcaga
     1021 attgaataag aacggtattc caatcaggcc ggtggtgaaa ccctctagga gagacagtgc
     1081 ctaaaacagt tgtgtggttg cccgcatacc ataggtatgc tatactttct caacgtaacg
     1141 ctttttactc cgtcgtctat tgggacgaag agggacagcg ctttgaacta gaattggaaa
     1201 atgacgaata cgaaattgtt ggagacgatg accacgacga tgactgaaac cacggggcag
     1261 gtaacaatga cctgcacagt ttgtcagaag cacaaagcac aattacaccg tcgtaagtca
     1321 gcacttaaac cggacttaga aatgtttgtg tgcggtgcct gtatgattgg caaaaaggaa
     1381 cctcgttggt tagttatact ggttggacgc cgcgacggca tccaa
//
LOCUS       DATCGC010001634         1013 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_289142, whole genome shotgun sequence.
ACCESSION   DATCGC010001634 DATCGC010000000
VERSION     DATCGC010001634.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1013)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1013)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1013
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289142"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..498
                     /locus_tag="VIJ87_15595"
     CDS             <1..498
                     /locus_tag="VIJ87_15595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445858.1"
                     /translation="ASIQTVPAERIKLIKEIQARLNISFQCEFSISIGETRKYAMANS
                     SGIIIVDRAFLESADRGRIFFAIAHEYAHAYLQHDVRLYEHLSKPVGQSPPKNLPEIR
                     RRFEKEADGIAARKAKEMGFPIESILEFILTQPDAEKGFHPDLRAYCKPRERAAYIMA
                     VYQSS"
     gene            783..>1013
                     /locus_tag="VIJ87_15600"
     CDS             783..>1013
                     /locus_tag="VIJ87_15600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445859.1"
                     /translation="MSKKNSLIICMVAALSLFVEMGCATKKYVKQQVDPVSGRVDELT
                     EVSKRNENAIKDVDSRAQSGIQSVQAKASEVDG"
BASE COUNT          267 a          274 c          250 g          222 t
ORIGIN      
        1 gcgtcgatcc agactgtccc agccgaaaga atcaagctca tcaaagagat ccaagcgcga
       61 ctcaacatct cgtttcaatg cgagttttct atctcgatcg gtgagacccg caagtacgcg
      121 atggcaaaca gcagcggcat catcatcgtc gacagagcat ttctggagag tgctgaccga
      181 ggccggatct tctttgcgat cgcccacgag tatgcccatg cttacctgca acacgatgtc
      241 cgtctctatg agcacctgtc gaagccagta ggtcagtcac ctccgaagaa cttgcccgag
      301 attcgccgcc gttttgaaaa ggaagctgac ggcatcgcgg ctcgcaaagc taaagagatg
      361 ggtttcccca tagagagtat cctcgaattc atcctcacgc agcccgatgc tgagaaggga
      421 tttcatccgg accttcgtgc gtactgcaaa cccagagaac gggcggccta tataatggcc
      481 gtctatcaat cgagctgaat ctcccttccc aactctctcg cattagccca ccattagtat
      541 cttctacacg gttacggaaa aaactgcggt ttttgccggt agattctagt ctcgcccatt
      601 cctttcgcca gcccgttttc ccgcgaaaac ctaagtgaaa tcaaccaatt tcgacccgac
      661 ctgacatttg gactcactcg tgctgagagg ggtgttagaa caaagtattg agtcctctaa
      721 atttagtgcc agaacgctaa ctggcccctg aaaaagcgaa ctaaaaacaa aggagagaga
      781 caatgtccaa gaagaacagc ctgatcatct gcatggttgc ggcgctttcc cttttcgtcg
      841 aaatgggttg cgcgacgaag aagtatgtga agcagcaagt cgatcctgtt agcggtcgcg
      901 tagatgagct gaccgaagtc agcaagcgga acgagaatgc gatcaaggat gttgattcca
      961 gagcacagtc cggcatccag tcggttcagg caaaagcctc ggaagtcgac ggc
//
LOCUS       DATCGC010001635         3023 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_191526, whole genome shotgun sequence.
ACCESSION   DATCGC010001635 DATCGC010000000
VERSION     DATCGC010001635.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3023
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191526"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            280..486
                     /locus_tag="VIJ87_15605"
     CDS             280..486
                     /locus_tag="VIJ87_15605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000034826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock domain-containing protein"
                     /protein_id="HEY5445860.1"
                     /translation="MSRITGKVKWFNNSKGYGFIEQPGSSDIFVHYSAIQGDGFKTLE
                     EGQEVEFEVTQGPKGPQAEKVTKM"
     gene            complement(606..1259)
                     /locus_tag="VIJ87_15610"
     CDS             complement(606..1259)
                     /locus_tag="VIJ87_15610"
                     /inference="COORDINATES: protein motif:HMM:NF041621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MXAN_5187 C-terminal domain-containing protein"
                     /protein_id="HEY5445861.1"
                     /translation="MKLRENKLLRATQHARTKNKYSVGENQPTPDEQLTRLEEDIRRL
                     RIEFDIFFNGAAKRPPYDTKGRVETLIKRLGDDRTLTYAQRFRYTSLIARYNSFRDLW
                     RRTMQGREEGRDAASAARANVREETPALDTAVSYVCSDVHKDVETVKSLFDSLIEAKT
                     QCGESVADLSFPRFHNLIASKADSLKERLGCDRVKFSVSVEDGHVSFKAKAERDDGE"
     gene            1441..2847
                     /gene="selA"
                     /locus_tag="VIJ87_15615"
     CDS             1441..2847
                     /gene="selA"
                     /locus_tag="VIJ87_15615"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004125 - L-seryl-tRNA(Sec) selenium
                     transferase activity [Evidence IEA];
                     GO_process: GO:0016260 - selenocysteine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HEY5445862.1"
                     /translation="MAQTKTSGDSRLRNVPSVDRLIRTDVAIELATRIGIKRVTALAR
                     LVTSEIRTAVQSESESANEQSAESLLINATQRLEEVATFESRLGIRNVINATGVVLHT
                     NLGRAPLSKAAQTAISEEAARYCTLEYDNASGLRGKRGARAEALLRELTGAEEALVVN
                     NCAAAALLILAVLAGDGETLVSRGELVEIGGDFRVPDVMASSGTRMIEVGTTNRTHLD
                     DYRKAITSKTRLIMRVHPSNYRVIGFTSSPRLDELAALAREAMIPLYEDAGSGQLSDL
                     SELGVEGEPIIEQLIAGGADLVSFSGDKLLGSVQAGLIVGKRGIVDRLRRHPLYRALR
                     SDKLRLAALEATLAAHQRNRAEVPVLQMLSLTKQDISTRAQSLLSQVSNNSKTVHLDL
                     IDSESAIGGGAGPTANLPTTVIAVSDQNRTAQEIETVLRTSLPPVIARIADQKVLLDL
                     RTVFPDQEDSLLRTLNNL"
BASE COUNT          734 a          800 c          762 g          727 t
ORIGIN      
        1 tgcgccgtcg tttttgatgc agggtcggag ttatctcagt tccccgcata ctagagaaaa
       61 agctttacag caatgagttt cgtaagttct gcccccgtaa gtctgtgcat gttgaaatag
      121 cgcaccccgc gcgtttcatc atgcattttt tgttggttgt gtgtttccgt ctagcaccac
      181 gtcaaggtgc gacccggctc acaagcatta acctagaagg tgcggaagcc atagggcttt
      241 cctgcctgtt ttaccgaatc gttaggagga ttcgttgtta tgtctagaat aaccggcaag
      301 gtcaagtggt ttaacaattc caagggctat ggcttcatcg aacagccagg ttcctcggac
      361 atcttcgttc actatagcgc catccagggc gacggcttca agaccctcga agagggccag
      421 gaagttgaat ttgaagtgac tcagggcccc aagggaccac aggccgaaaa agtcacgaag
      481 atgtaatgtc tccccggctt gctttagcaa agccactgac tgcttccggt cacgggtccg
      541 gagctcacaa gaaaaggcga ccggtcggtc gcctttttta tttaccagcc tcgccgtcgt
      601 ttgccttact cgccgtcgtc tcgttcagcc ttcgctttga agctgacgtg gccatcctcg
      661 acgctaaccg agaacttcac tcgatcacat cctaaccgct ccttgagact gtcagccttg
      721 gaagcaatca aattgtgaaa gcgcggaaac gatagatctg caaccgattc tccgcactgg
      781 gtctttgctt caattaaaga atcgaaaaga ctcttaacag tttccacgtc cttgtgaaca
      841 tcactacaga catacgaaac tgcggtatct aatgcgggcg tctcttccct aacattcgct
      901 cgtgccgccg aggccgcatc gcgtccctct tcccgaccct gcatagttct tcgccaaagg
      961 tcgcgaaatg agttatagcg cgctatcaac gaggtgtacc ggaaccgttg ggcgtaagtg
     1021 agggtacggt cgtccccaag tcttttgatt aaagtttcaa ctcgtccctt tgtgtcatac
     1081 ggaggccgct tcgctgcgcc gttgaaaaag atgtcaaact caattcgcag ccgacggata
     1141 tcctcctcga gacgagttag ttgttcgtca ggagtaggct gattctcgcc gacagagtat
     1201 ttgttctttg tccgtgcgtg ctgtgtcgct cgcagcagct tgttttcacg taatttcact
     1261 gaaatctcca aaggcgagtt tgcttaggcg ggtggcgtca aggtgacgcg gtctctttgc
     1321 agtctagaag tttcaaaaga gcgggtcaac cagtttattc cgccgcttta tgtaatcaat
     1381 gtttgattgg tcggaaatga aaagatatgc taacaaacga agctaatact caagagaatc
     1441 atggcccaaa ccaaaacatc cggcgactcg cggctcagaa atgtgccttc ggtcgaccga
     1501 ctgatccgca cggacgttgc gattgaactc gcaacacgaa tcggcatcaa aagagttaca
     1561 gccctggcgc gtttggtgac ctctgaaatt cgcacggcag ttcaatctga gtccgaaagt
     1621 gcaaatgaac aatctgccga gtcgcttctc atcaatgcta ctcaacgcct tgaagaagta
     1681 gctacgtttg aaagtcggtt aggaatcaga aatgtcataa acgccaccgg tgtcgtatta
     1741 catacaaatc tcgggcgcgc gcccctctca aaagctgccc aaaccgcaat cagcgaggaa
     1801 gcagctcgct actgcactct cgagtacgac aatgccagcg gtttaagagg aaaacgcggt
     1861 gcgcgcgcag aagctttact tcgcgaattg actggggctg aggaggcgct cgtagtaaac
     1921 aactgcgcag cagccgcact tctgattttg gcggtgttag caggagacgg agagacgctt
     1981 gtttcacgcg gcgaattggt tgagataggc ggtgactttc gcgtacccga tgttatggca
     2041 agctcaggga cgcggatgat tgaagttggc acaaccaaca ggactcacct agacgactat
     2101 cgcaaagcaa tcacttcaaa gacgcgcctc atcatgcgag tacatccttc gaactatcgc
     2161 gtgatcggct tcaccagttc tccgcgattg gatgaactgg cggcacttgc ccgagaagca
     2221 atgattcccc tctacgaaga tgcgggatcg ggacagctga gcgatcttag cgagctcgga
     2281 gtagaaggtg agccgataat tgaacagctg atcgcgggag gggcagatct cgtttcgttc
     2341 agtggcgaca agctacttgg ctcagtgcaa gccggtttga tagtaggaaa acgtggaatc
     2401 gtagatcgcc ttagaaggca tccgctctat cgcgctttga gaagcgacaa gctacgactc
     2461 gcggcccttg aagctacgtt ggccgctcat caaagaaacc gagcagaggt cccagttctg
     2521 cagatgttat cgctcacaaa gcaggacatc agcacacggg ctcagtcact gctgagccaa
     2581 gtatcgaaca actcaaagac ggttcatctt gacctcatcg acagcgaatc tgcgattggt
     2641 ggaggtgccg gcccgaccgc aaatctccca accacggtta ttgcggtaag cgaccaaaac
     2701 cgcaccgccc aggaaatcga gaccgtcttg cgaacctccc taccacctgt tattgcgcga
     2761 atagctgacc aaaaggtgct tcttgacctt cgtacggtct tccctgatca ggaagactcg
     2821 ctcctaagga ctttaaataa cctctaaatc gttagttttt cagttggcct tagcaaaggc
     2881 cgacaaggta taatccgttc ggcttcactt cggggccttc aatttagatt ccttacgggt
     2941 ccggttccat tcccagtctt gaattcactt agaaacctaa cgtcctatct ctctgcctcg
     3001 ggactttcgc tacttgcggg tct
//
LOCUS       DATCGC010001636         1001 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_57494, whole genome shotgun sequence.
ACCESSION   DATCGC010001636 DATCGC010000000
VERSION     DATCGC010001636.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1001
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57494"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..236
                     /locus_tag="VIJ87_15620"
     CDS             <1..236
                     /locus_tag="VIJ87_15620"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY5445863.1"
                     /translation="VADAFRSEQRGLVTSALSQLPEEQKRALMLAYFDGLTQSEIATK
                     LEAPLGTVKTRMRAGLIKLRELLGNKSTTFGFE"
     gene            233..>1001
                     /locus_tag="VIJ87_15625"
     CDS             233..>1001
                     /locus_tag="VIJ87_15625"
                     /inference="COORDINATES: protein motif:HMM:NF021604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma factor"
                     /protein_id="HEY5445864.1"
                     /translation="MSHDDYREMIPARALSALDAAEDRVLTNHLDECAECRRELDDWQ
                     ATTAGLAFEASPLEPSAQVRERILGQVRSATVEASSSKVIPFVQPRKNIWSSFGSLGA
                     IAASILFVGLLVYVVLLWKENRALQSQIATLSAENTKVNKELELNAAAVKLISSPGAK
                     MAELGATPMAPGATAKIAFDKTGHAMLMAQGLPAAPANMEYQLWFIVGNEKMPGKTFR
                     TDGSGSGVLIDQVPAAAMNSAVFAITVEPKGGVTSPTG"
BASE COUNT          254 a          260 c          269 g          218 t
ORIGIN      
        1 ctgtcgccga cgcgtttaga tcggaacaaa gaggcctcgt gacctcagct ctctcgcaac
       61 tccccgagga acaaaaacgc gcgttgatgc ttgcctactt cgacgggctt acacagtcag
      121 agattgcaac aaagttggaa gcccccctgg ggacagtaaa gacgcgcatg cgagcaggtc
      181 tgatcaagtt gcgcgagttg ctgggaaaca agagtacgac gtttggattc gaatgagtca
      241 cgacgactat agagagatga ttccggcgcg cgccctttca gcacttgatg ctgcggaaga
      301 tcgtgtgttg actaatcatc tggacgagtg tgctgaatgc cggcgcgagc tggacgactg
      361 gcaagcgaca accgcaggtc tcgctttcga agcttcacca cttgaaccgt cggcgcaggt
      421 acgtgagcga atactcggtc aagtccgaag cgccacggtt gaagcgtcaa gttcgaaagt
      481 cattcctttc gtgcagccaa ggaaaaatat ttggagctcc tttggatctc tgggtgcgat
      541 tgccgcctca atcttgtttg tcggactgct tgtctatgtc gtgctccttt ggaaagagaa
      601 tcgagcgcta cagtctcaga ttgctactct ttcagccgag aacacaaagg taaacaagga
      661 actcgaactg aatgcagctg ctgtaaaatt gatctcctca ccaggcgcta agatggcgga
      721 attaggtgct actccaatgg cgccaggcgc taccgcaaaa atagccttcg acaaaacagg
      781 tcacgcgatg cttatggcgc agggacttcc agctgcacca gccaacatgg agtaccaact
      841 ttggttcatt gtcggtaatg aaaaaatgcc cggcaaaaca tttagaacag atggcagtgg
      901 cagcggcgtt ttgatcgatc aagttcctgc tgccgcaatg aactcagccg tcttcgcaat
      961 caccgtcgaa ccgaaaggcg gggtcacttc accaactggc c
//
LOCUS       DATCGC010001637         1418 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_90935, whole genome shotgun sequence.
ACCESSION   DATCGC010001637 DATCGC010000000
VERSION     DATCGC010001637.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1418)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1418)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1418
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90935"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            207..>1418
                     /locus_tag="VIJ87_15630"
     CDS             207..>1418
                     /locus_tag="VIJ87_15630"
                     /inference="COORDINATES: protein motif:HMM:NF018449.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SBBP repeat-containing protein"
                     /protein_id="HEY5445865.1"
                     /translation="MAVDPSNQAKLYAATEGGVFRTVDGGTTWSQVGPAINMLTVAVD
                     PSSPTTIISGANGQGIFKSIDGGNTWTNPVATGTVFTLTFHPQTSGKVFAGLSAASLQ
                     SVDSGEHWSPFGVGGSIRAIRFDPTNFNTIYLASSAAINRSLDGGVTWSSILGQPGGF
                     YGVVVDPQNSLKLYAANHVFGMFTSIDGGQNWGQFNSGLASGHLNSLNTIGTSVIVGL
                     EDLGVYKLSGSNWVPTGLIYSTVNSLAVANVPQPTLYAGSFVGSASDAYLSELNASGS
                     ALLYSTYLGGTGYDSARGVALDVNGDATVVGVSASLDLPLRNQVKTKAASATDAFITK
                     ISSASGDLVFSSYLGGNGVDNATAVAVDSAGNILVAGSTRSNNFPTVAAFQPTLRNID
                     DSFVSKILLTPP"
BASE COUNT          321 a          340 c          395 g          362 t
ORIGIN      
        1 tgggcgatca attcgagcgc acacggggcg tggccgttga tagctcgggt aatgcttttg
       61 tcaccggtga aactaactcc gacaattttc cagtaacttc caatgccctc aggtcaaggc
      121 gaagtcgtgg agcgctcttc aagagtagtg acgatggagt taactgggtc ggtgtcgggt
      181 tcccggtgga ttttgctgtt aatggagtgg ccgtagatcc aagtaaccag gcgaaactgt
      241 atgcagccac agaaggcgga gtctttcgaa cggttgatgg cgggacgacg tggagtcagg
      301 ttgggccagc gatcaatatg cttactgttg cggtagatcc gtcgtctccg acgacaatca
      361 tcagtggcgc aaacggccag ggcattttca agagtattga cggtggcaac acgtggacta
      421 atccagtcgc gactggaact gtctttacct tgaccttcca tccgcaaacg tcaggaaaag
      481 tatttgccgg attgagcgcc gccagtctgc agagtgtgga cagcggcgaa cattggtcgc
      541 cttttggcgt cggcgggagc attcgtgcca ttcgattcga ccctacaaac ttcaacacga
      601 tttatttagc ttcgagtgcg gcgataaaca ggagtcttga tggtggagtc acgtggtcga
      661 gcattctggg ccaacctggt gggttctacg gcgttgttgt cgatcctcaa aacagcttga
      721 agctttacgc ggctaaccac gtattcggaa tgttcaccag cattgatggc ggacagaatt
      781 ggggccagtt caacagtggc ttagcgagtg gacacttgaa ttctttaaat acgatcggca
      841 cttcagtaat cgttgggttg gaagaccttg gagtttacaa actcagtgga agcaattggg
      901 tgcccaccgg tcttatttac tcaactgtaa atagcttggc cgtggcgaac gttcctcagc
      961 caactttgta tgcaggttcg tttgttggca gcgcttcgga tgcttatctc agtgaattga
     1021 atgcgtcagg ctccgcctta ctttattcaa catatctggg tggcacaggt tacgacagtg
     1081 caaggggagt ggccctggat gttaatggcg acgcgaccgt cgtcggtgtc agcgcttcac
     1141 ttgacctgcc gctgaggaat caagtcaaga ccaaagcggc gtctgccaca gacgccttca
     1201 taacaaagat tagttctgcg agcggcgatc tggttttttc ttcatacctg ggcggcaatg
     1261 gagttgataa cgcaaccgca gtggccgtcg attccgctgg taatattctt gtcgccggca
     1321 gtacgagatc aaataacttt cccacagtcg ctgcattcca gccgacactg cgtaacattg
     1381 acgattcgtt cgtttcaaaa atacttctga ctcctcct
//
LOCUS       DATCGC010001638         1280 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_325380, whole genome shotgun sequence.
ACCESSION   DATCGC010001638 DATCGC010000000
VERSION     DATCGC010001638.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1280)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1280)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1280
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325380"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            50..>1280
                     /locus_tag="VIJ87_15635"
     CDS             50..>1280
                     /locus_tag="VIJ87_15635"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5445866.1"
                     /translation="MDSLRVFFARLRSLFRKQKLEDELAAEIESHLEMQVEDLVRQGI
                     TPAEARYIALRKFGGVDQVKETYRDGRTLPWIETFFRDLRYGLRMLRRSPGMTAVAIL
                     SLALGIGANTALFSVVDAVLLKTLPVHEPEQLVIFEWQSGRPFRVSGMSGTSNVDVPP
                     GQRGLSLFRYDVFEQMRKSQTEATESPLSDLFAFAPLREVIANVNDQPEVIKGQAVSG
                     NYYSGLGLQPSLGRTITLDDDRAGASPVAMLSYQFWQERFGGNRSVIGNQLKLNRQTF
                     TIIGVTPPTFNGTLQVGYQPAITIPLAVEPQLRGENSLLGTASEPGVWWLNVMGRLKP
                     GTTLEQARESLNSAFQTAALAAMPPPRKANQPAHLEPKDFPHLIVEAGNRGMMDRRKM
                     YAPTIYGLFIVVALVLLI"
BASE COUNT          318 a          339 c          335 g          288 t
ORIGIN      
        1 cacctccgcg atcgtcactc ggtttttagc cccctctgag aaataaacaa tggacagcct
       61 aagagtcttt ttcgcgagac tgcgctcact gtttcgaaaa caaaaactcg aagatgaact
      121 cgcagcagaa attgagtcac atctcgagat gcaggttgaa gacctggtgc ggcagggaat
      181 aactccggca gaagctcgtt atatagcgtt gcgaaaattc ggcggcgtgg accaggtcaa
      241 ggaaacctac cgagatggac gcactctgcc atggatcgag accttctttc gtgatttacg
      301 ttacggactc cgcatgctgc gacgtagtcc cggcatgact gcggtggcga tcctctcgct
      361 cgccctgggt atcggcgcaa acacagcttt attcagcgtt gtcgatgccg ttctattaaa
      421 gactctgcca gtacacgaac cagaacagtt ggtgatcttt gaatggcagt ccggacgtcc
      481 gttcagagtg agcgggatga gtggcacttc aaatgtcgat gtacctccgg gccaaagagg
      541 tctttcattg tttcgctatg acgtctttga acagatgcga aaatcgcaga ccgaagcgac
      601 ggagagtcca ctaagtgatc tcttcgcttt cgctcccctg cgtgaagtga ttgccaacgt
      661 caacgatcaa cccgaagtca tcaagggaca ggccgtctca ggaaattact actctgggct
      721 aggattgcag ccgagtctgg ggcgaacaat tactctggat gacgaccgtg ctggtgcttc
      781 gccagtagca atgctgagtt accagttctg gcaagagcgc ttcggtggca atcgcagcgt
      841 catcggcaac caactcaaac tcaatcgaca aacgttcacc atcatcggtg tcacgccgcc
      901 tacattcaat ggcacgcttc aagtcggtta tcagcctgcc attacgatcc cacttgcagt
      961 tgagccacag ctgcgaggag aaaacagcct gctgggtacc gcgtctgagc ctggagtatg
     1021 gtggttgaat gtgatgggaa ggctgaagcc tggcacgact ctcgaacaag cgcgggaaag
     1081 tctgaacagc gcttttcaaa ccgccgcact ggcagcgatg cctccgcctc gaaaggctaa
     1141 tcaaccagca catctcgaac cgaaagattt tccgcacctg attgttgaag ccggcaatcg
     1201 tggaatgatg gacaggcgga agatgtatgc accaaccatc tatggactct tcatcgtagt
     1261 agcactcgta cttctaattg
//
LOCUS       DATCGC010001639         1578 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_155467, whole genome shotgun sequence.
ACCESSION   DATCGC010001639 DATCGC010000000
VERSION     DATCGC010001639.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1578)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1578)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1578
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155467"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            163..690
                     /locus_tag="VIJ87_15640"
     CDS             163..690
                     /locus_tag="VIJ87_15640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445867.1"
                     /translation="MAGDNRSLIEFGYYQGLQRFEYFIVGVSLALCAYVGLTLHPEKL
                     TFLSAYAMEVVSLALLILSAGVGLKRIESLVQISRLNGQLLDAIEKRGAVMVEKPNSE
                     GLIVVKYPGRLLTIEASANWVRELNDKIQVLHHMIEKETTRAETLYKWRNRLLLIGFC
                     GLVLSNVLTPYLHSY"
     gene            complement(1134..1382)
                     /locus_tag="VIJ87_15645"
     CDS             complement(1134..1382)
                     /locus_tag="VIJ87_15645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445868.1"
                     /translation="MKNRKNYVMTKSNLTLTQSGLLAVLLQRQRHKVIQLAQRRAHGR
                     QVRAPFWSSLTRWWGALTARTLVDDSAKPSVGTVPRHT"
BASE COUNT          362 a          395 c          429 g          392 t
ORIGIN      
        1 aagcgtggcg aaccaaacgc tgtcaggatg caatcggaca tgtacagcat tacagccggt
       61 cacatgaggt cgtgattcgc gtttacgatg atgctgccaa catgatcgag acgcacgagc
      121 acacctgcga ctcgacaacg ccgtaaagaa ttgtcgcgga aaatggctgg agacaatcga
      181 agcctaattg agtttgggta ctaccaaggc cttcagcgtt tcgagtactt catcgtcgga
      241 gtctctctgg cgctatgcgc gtacgtcggc ctgacgctgc atcctgagaa gctcacgttc
      301 ttgtcggctt acgcgatgga agtcgtctcg ctcgcgctgc ttattctttc tgcaggcgtc
      361 ggcttaaagc gtattgaatc actcgttcaa atcagtcgct tgaacggtca actactcgac
      421 gcaatagaaa aaagaggagc agtcatggta gaaaaaccca attccgaagg gctgattgtc
      481 gtgaaatatc cggggaggct tctaaccatc gaagcatcag caaattgggt acgcgaatta
      541 aatgacaaaa tacaggttct acatcacatg atagagaagg aaacaaccag ggccgagact
      601 ctttacaaat ggcgcaatag actgctctta attggctttt gcggcttagt tttgtcgaac
      661 gttcttacgc cgtacctcca ttcttactaa cgagcgttct agctgcagaa acgcggtcag
      721 cttttcatcg gcacgaatga tgaaacggtt tccgtcgtcg cgatgcgcgt ctgcaatcca
      781 gatcgttcgc ccgttggaat caattgctga gagcgcggcc acaactgcaa ccagctcaca
      841 gattcttgac caattgcggc gagggtctgg ttaatccagc aggtgcggtg tcgattcagt
      901 gtgatgtctg ttcaaggatg cgatgaacac cagcgataga ttcgtcggtt cctgctcgcg
      961 tgaaattttc tagtagttcc acaaggcgtg actcgtaaga atcgcactta ggggactcgc
     1021 catttgattg gacccattcg ggatgttgca tccgcaggtc gtcgtgaatc tgttgccgga
     1081 gctcgctgta agtatggatt tggtgagaca tggcaatttg cttggtgaaa ggttcaagtg
     1141 tggcgcggaa ccgttcccac ggagggcttg gcggagtcgt cgacgagggt tcgtgccgtg
     1201 agtgcgcccc accaccgagt gaggctactc caaaagggag ctcgcacctg cctcccgtgt
     1261 gcgcgacgct gggccaactg gatcactttg tggcgctggc gctgcagcaa aacggccagt
     1321 agtccgcttt gcgtaagggt taggtttgat tttgtcataa cgtagttttt tctgtttttc
     1381 ataagcgcct ccttattgaa ggtttgacag cgctcccgac agattcccat atgggacctt
     1441 cgtcctatgc ctttaggggg ataccagacc cgcttatgat catcgacttg tacgaagtcc
     1501 gcccgcgcaa agatcatcgc ggcgtcgatt tgatcagcga cacactaccc ctcggtcggc
     1561 tttggttgcc atgagctg
//
LOCUS       DATCGC010001640         1679 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_57508, whole genome shotgun sequence.
ACCESSION   DATCGC010001640 DATCGC010000000
VERSION     DATCGC010001640.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1679)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1679)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1679
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57508"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..338)
                     /locus_tag="VIJ87_15650"
     CDS             complement(<1..338)
                     /locus_tag="VIJ87_15650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445869.1"
                     /translation="MKRTYEAWAERAIGAFKYLIAVYLMLAGVVTVFSHGDPSVSALH
                     SLYTSHLSLAIIGLIIFASGATLFWGKIRRNRKLVGRGLFSVYLCYLFAAILNFIAYA
                     GDPTMWVGNA"
     gene            complement(378..451)
                     /locus_tag="VIJ87_15655"
     tRNA            complement(378..451)
                     /locus_tag="VIJ87_15655"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(415..417),aa:Leu,seq:gag)
     gene            complement(442..723)
                     /locus_tag="VIJ87_15660"
     CDS             complement(442..723)
                     /locus_tag="VIJ87_15660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445870.1"
                     /translation="MRTIDFRSTRWGHNHYFEAKDDGTYYGPCWVSGGVSVGDTLVWK
                     TNYGHAEAEVLDAKHCGDPSDMYFVKSKIVRRIANPDIVSQEELDRSFA"
     gene            complement(1281..1354)
                     /locus_tag="VIJ87_15665"
     tRNA            complement(1281..1354)
                     /locus_tag="VIJ87_15665"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1318..1320),aa:Val,seq:gac)
     gene            complement(1495..1568)
                     /locus_tag="VIJ87_15670"
     tRNA            complement(1495..1568)
                     /locus_tag="VIJ87_15670"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1532..1534),aa:Leu,seq:taa)
BASE COUNT          419 a          440 c          391 g          429 t
ORIGIN      
        1 atcgcattgc cgacccacat tgtggggtca ccggcatagg ctatgaaatt aaggattgct
       61 gcgaacaggt agcataggta aactgagaac agacctcgac ccacgagttt acggttgcgt
      121 cgtattttac cccaaaacag ggtggccccc gaggcaaaga taataagtcc aattattgcc
      181 agggacaggt gactggtata aagagaatgc aacgcgctaa ccgacgggtc tccatgacta
      241 aagacagtaa caacaccggc tagcatcagg tagacagcaa tgagatattt aaacgcgcct
      301 atggcgcgct ctgcccatgc ttcataggtt ctcttcataa ccatattgta tgactaattg
      361 ttcaacaaag caatgtgtgt ccgcgaaggg atttgaaccc ttactggata ggccctcaac
      421 ctattgcctc tacctattgg gctacgcgaa cgaacggtct aactcttcct ggctaacaat
      481 atcaggattg gcaatccgtc tgactatttt agactttacg aaatacatgt cactggggtc
      541 accgcaatgc tttgcgtcca atacctcggc ctcggcgtga ccatagtttg ttttccaaac
      601 taaggtgtca ccaacggaaa caccaccact gacccaacaa ggtccataat aagtgccgtc
      661 gtccttagcc tcaaaatagt ggttgtgtcc ccaccttgtg gaacgaaagt caattgttct
      721 catatcttac ctcatgcatc cagggaacaa tgttattagc ggagtatgga ttaaagtatt
      781 ccagtaccgg cccgcaccat acacccggct cggcgtgaca gcgtggacac tctttggcta
      841 atgcctgttc atggtcactc atagcatttc caccttgtct actgggaagc ccagacggtc
      901 cagggcatcc atgaattcct taacgtcagc ctcgggcacg gtccggtgga cctgagcctc
      961 aaaggccggt attgtccagt aaattgcgta catgattatt ccttcttgcg gagagcagag
     1021 tattcgaaac ccagaccttt cggtccaact cggctagcaa ccggttcctg cgcgcctgtc
     1081 aggtttgctc tcctggtatg atttcaatat ccccgtagat gaggatattg attgttctgt
     1141 catttactcg ttcataagta tatccgtgaa cctgtgggta atcggtcatg agtctatcca
     1201 tgacctcttc aacaaaggcg tcgtcgtcaa ggtcacggtt attatgtgtt tttaccctta
     1261 gtaaacaatg ctgcataacg ttggcggtac tggatttgaa ccagcgacct catccgtgtc
     1321 gaggatgcat tctgccagac tgaactaacc gccagggttg cggtacgaag actggttaag
     1381 ttctttaccg cgccggtaac ctttataccg aaatttagtg gagtctctaa ccccgtctcc
     1441 acaagggcca gatgttggga ggctctgaaa cctcttaggc caccacagcc caagtgcccc
     1501 tagtgggatt cgaacccacg acaccttgat tttaagtcaa gttcctctag ccgctgggat
     1561 ataggggcat tgaaccgtgt gagcattgag gccggtatcc acgcccctca ctacgccgct
     1621 aagcgtatac acttgtaccc tcggtgggag ttgaacccta ctgtcgtcac gttataagc
//
LOCUS       DATCGC010001641         3262 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_223208, whole genome shotgun sequence.
ACCESSION   DATCGC010001641 DATCGC010000000
VERSION     DATCGC010001641.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3262)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3262)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3262
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_223208"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>3262
                     /locus_tag="VIJ87_15675"
     CDS             <1..>3262
                     /locus_tag="VIJ87_15675"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY5445871.1"
                     /translation="CKFTYLNPAATKLWGASTSEELIGRSIFDFVEPKSRARVQEGID
                     KILSLQTPTALSEQKCIRLNGELIDVEVTGIPFNQGGKASVQAVFRDVTEQKRAREAL
                     RETEARLRTVVGSASLILFATDKNGIFTLCEGEGLSSISRKPGELVGQSIFEINADHP
                     MIGENVRRALTGEAFTVSVEFGDFVFEVRYSPLTDESDSIVGVIGVATDITEQRRVEA
                     VVRESEVRYRELFENANDIIYTHDLDGNFTSLNRSGERLTGYTREEAATMNVADVIAP
                     EYLTMAREMIAHKATERVSTVYEVDIISKEGRRVRLEVSTRLIFRDGKPVGVQGIGRD
                     LTERKRSEEELRETQNFFNSFMDNSPAVAFMKDAEGKYVYVNKPFERLFGKKLSYLQG
                     RKSFDWLPREFAEETHRHDLRVLNSGTPEEVIETVPLEDGTPHHWLVFKFPTTDSAGN
                     KFVAGVGVDISERRRAEDALAQQAQREAMSHRISQAIRCSLDSQEIFETAVKELGSYL
                     NVDRCSLFMRDDQAHSARNVAEYHAEGVLPAASDFDLAHLQTLIVALDETGVLSFDDA
                     AHDSRIADLYRNILSKADVQSIMYVAIRVGDGVPAAFALSTTRQLRPWSESDIALAKA
                     VADQTGIAIRQASLYQKAETTSTREALVNRLTMAIRASLSLPEVLSTATRELGLALSA
                     SRVHLFLYNAEGLSSPLEHEYLGEGVSSIKHVEVTYNDPIGRHLLSSSQPLVINDAIN
                     YSENSAELSAYVREHAQQLGLRSQIIYPLIVKGQFRGVLCIHQTDRNRNWTEDEITLV
                     VALAERLSIGIAQAELFEMVARGKTEWEATFDAMSDGIFIFDREGELKRVNRAGAAME
                     ALHPRALLGRKCCDILSTHEGDKACVVEKAIEDCRSVTIEITPSRLNRPLLVTIEPIL
                     DSANKAQAAVCTARDLSELRKVQAVAREHQSLLTNILESARESIYAVDTNGCFKWCNT
                     ATMKGLGFTLNDFIGRPLLDMVYEGDRDLVQEKLDAALNGSPQTYEMRYFSFNGSLRH
                     ARVDNSPLVVEGRVTGVLGIARDITEQKEERERAARADKLRALGQLASGVAHDFNNS"
BASE COUNT          807 a          825 c          896 g          734 t
ORIGIN      
        1 attgtaagtt cacctacctg aacccagccg ccactaaact ttggggagcc tctacgtcgg
       61 aagaattaat cggccgatcg attttcgact ttgtcgagcc aaagagccgc gccagagttc
      121 aggaaggaat cgataagatt ctcagcctgc aaacacccac cgccttatct gaacaaaaat
      181 gtattcgact caatggagag ctcattgatg tagaggttac gggaattccc ttcaaccagg
      241 gtggtaaggc gtccgttcag gcagtattcc gcgacgttac agaacagaaa cgcgctcgag
      301 aagcgttgag ggagaccgaa gccaggttgc gtacagtcgt tggtagcgca tcgctgattc
      361 tctttgctac agataagaac ggtatcttca cgctgtgcga aggagaggga ttaagcagca
      421 tttcacggaa gcccggagag cttgttggtc agtccatctt tgaaatcaac gccgaccatc
      481 ccatgattgg tgagaacgtt cggcgcgcac tgactggtga ggctttcacc gtctcagttg
      541 aatttgggga ttttgttttc gaagtgcgct actcaccgct taccgatgaa agtgacagca
      601 tcgtcggggt cataggggta gctaccgaca tcaccgagca aagaagagtt gaggccgtcg
      661 ttcgcgagag tgaagtacgt tatcgagagt tatttgagaa cgcgaacgac atcatctaca
      721 cgcacgacct cgacggaaac tttacttctc tgaatcgtag tggagaacgg ctaacgggtt
      781 atacgaggga ggaagcggca acgatgaatg tcgccgacgt aatcgctccc gaatatctta
      841 cgatggcccg cgagatgatc gctcacaaag ctaccgagag agtgtcgact gtttacgagg
      901 tcgatatcat ctcgaaagag ggtcgtcgcg ttcgtcttga agttagcact cgtctaattt
      961 ttcgtgatgg caaaccagtc ggggtgcagg gaatcggccg agacctcact gagcgcaagc
     1021 gttcggaaga agagctacgc gaaactcaaa acttcttcaa cagcttcatg gacaacagcc
     1081 cggctgttgc tttcatgaaa gatgccgaag gtaaatatgt ttacgtcaac aagccctttg
     1141 agcgcctctt tggaaagaag ttgagttatc tccagggacg gaagagcttc gattggctgc
     1201 cgcgtgagtt cgctgaagaa acccatcgtc acgatctcag ggtcctaaac tccgggacgc
     1261 cggaagaggt tatcgaaacg gtccccctcg aagacggcac accccatcac tggctggtgt
     1321 tcaagtttcc cacaactgat tcagccggaa acaagtttgt cgcgggtgtg ggcgtcgata
     1381 ttagcgaacg tcgtcgtgcc gaagatgccc tggcgcagca ggctcaacgt gaggcgatgt
     1441 cgcatcgtat ctctcaagcg attcgctgct cccttgatag tcaggagatt tttgagacgg
     1501 ccgtaaagga attgggatcc tatttgaatg ttgaccgttg ctctctcttc atgagggacg
     1561 accaggcaca ctccgcgcgg aacgtggctg agtatcacgc agaaggagtt ttaccagctg
     1621 cttccgactt cgatctggcc cacctacaaa cgttgattgt cgcgctcgat gagacgggag
     1681 ttttgtcctt cgatgacgcc gctcacgata gtcggattgc tgacctttac cggaacatac
     1741 tttccaaggc tgatgtgcag tcgatcatgt atgtggccat tagagttggt gacggcgtgc
     1801 ccgctgcgtt cgcattgtcc acgaccaggc agctacgtcc atggagtgag tcagatattg
     1861 cattggctaa ggcggtagcc gaccaaactg gaattgcaat caggcaggcg agcctttatc
     1921 agaaggccga aacaacctca acacgcgaag ccctggtgaa ccgtctaacg atggctatcc
     1981 gagcttcact gagtttgccg gaagttctca gcacggcgac ccgcgaactt ggcctggcgc
     2041 tttcagcgtc gcgagtgcat ttgttcctct acaacgccga agggcttagc tcaccgcttg
     2101 agcatgaata tctcggcgag ggtgtcagca gtatcaaaca cgtcgaagtt acctacaacg
     2161 accccatcgg tcgtcacctt ctttcgtcga gccaaccact agtcatcaac gatgccatta
     2221 attactcgga aaactcagcc gagctgagtg catatgtgcg cgagcacgca caacagctgg
     2281 gattgcgttc acagattatt tacccgctta tagtgaaagg gcaatttcgc ggagtgttgt
     2341 gcatccacca gaccgatcga aatcgtaact ggaccgagga tgagatcaca ctcgtcgttg
     2401 cactggctga acgactgtcg atcggcatag ctcaagctga gctatttgaa atggtcgcgc
     2461 gtggtaagac cgaatgggaa gcaaccttcg atgcgatgtc agacggtatc tttattttcg
     2521 accgtgaagg tgagttgaag cgagtaaatc gtgcaggcgc ggcgatggag gcgttacacc
     2581 cgagagcgtt gctgggtcgc aaatgctgcg acattctcag cacgcacgag ggagataaag
     2641 catgcgtggt tgaaaaggcg atagaagact gtcgcagcgt tacgatcgaa attaccccga
     2701 gtcgtttgaa tcgtccgtta ctggtaacca ttgagccgat cctcgacagc gccaacaaag
     2761 ctcaagccgc agtctgcacc gcccgcgatc tgtcggagtt gcgcaaagtt caagcggtag
     2821 cacgagagca ccagtctctt ctcaccaaca ttttggagag cgcccgggag tcgatctacg
     2881 cagtcgacac taatggctgc ttcaaatggt gcaacaccgc aaccatgaag ggcctcggat
     2941 ttaccctaaa cgatttcatt ggacgtccac tgctggacat ggtctatgag ggcgaccgtg
     3001 atctcgtgca ggaaaagctt gatgccgcat taaatggctc gccgcaaact tacgagatgc
     3061 gatacttctc tttcaacggt agtttgcgtc acgcacgagt agataattcg ccacttgtgg
     3121 tcgaaggccg cgttaccggt gtgctgggaa tcgcacgcga cataactgaa caaaaggaag
     3181 aacgagaacg tgccgccagg gccgacaagt tgagagcgtt gggacagctt gcttcgggtg
     3241 tggctcacga cttcaacaac tc
//
LOCUS       DATCGC010001642         1020 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_27032, whole genome shotgun sequence.
ACCESSION   DATCGC010001642 DATCGC010000000
VERSION     DATCGC010001642.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1020)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1020
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27032"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..246
                     /locus_tag="VIJ87_15680"
     CDS             <1..246
                     /locus_tag="VIJ87_15680"
                     /inference="COORDINATES: protein motif:HMM:NF013621.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1-phosphate
                     adenylyltransferase"
                     /protein_id="HEY5445872.1"
                     /translation="EAERAEILAALRVVDYVTVFDDVSPRTLIAKLLPDVLVKGGDYK
                     LDEIHGREEVEAAGGRVVPLPFVEGASTTSIIERMKK"
     gene            445..>1020
                     /locus_tag="VIJ87_15685"
     CDS             445..>1020
                     /locus_tag="VIJ87_15685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445873.1"
                     /translation="MSSSIQKHPALESTLSRIRETPEYQQLLIQLRNNEPLISISGLV
                     AGSARALALAALQRDCGKTFAIVTQSTRDLEPWETDLRFWYCALSGQESCDAEVLVIP
                     ASESDPYAGVSPHAQTLELRALSLWRLRQHACDFVLLTARALARKSVGPAEIEKAGVV
                     LRRDEEQSPDELVEKLIATGYVREDPVSGIGG"
BASE COUNT          252 a          249 c          284 g          235 t
ORIGIN      
        1 gaggcagagc gagctgaaat tctcgcggct ctccgagtcg tcgactacgt tacggttttt
       61 gacgatgtat ctccgcgaac gttgatagct aaacttttgc cggacgttct ggtgaaaggt
      121 ggcgactaca aattggatga gattcatggg cgagaagagg ttgaggcggc aggcggaaga
      181 gtggtcccgt taccgtttgt tgaaggcgca tcgactacgt cgatcattga acgaatgaag
      241 aagtgaatgt ccgatatgct tcagcttttc gctatcttca gaaagagtca gccgcagaca
      301 aacgaagaat gacgcagacc agatcaaaac aaagtgagca acgcccaagc attgttattt
      361 ctgatctgcg tgttctgcgt tcatcggtgg ctgaaatcta cttgagacga cgacaagcta
      421 aagcatatcg gacgtagtta aaccgtgagt agttccatac aaaaacatcc cgcgttggaa
      481 agcacgctga gtcgaatcag ggagacacct gagtaccagc agctcttaat ccagctaagg
      541 aacaacgagc cactgatttc aataagtggt ctggttgctg gatccgcccg cgccctggca
      601 ctggcggcgc tgcaacgcga ttgtggaaag acgttcgcga tcgttaccca gtcaactcgg
      661 gacctggaac catgggaaac cgatctccgg ttttggtatt gcgcgctctc agggcaagaa
      721 agttgcgatg cggaagttct ggtgatcccc gcatccgaga gcgatcctta cgcgggcgtt
      781 tctccacacg cgcaaacact cgaactgcgt gctctctcac tgtggcgctt gcgacaacat
      841 gcttgtgatt tcgttttgct aacggctcgc gctctcgcac gcaaatccgt cggccctgct
      901 gaaatagaaa aagctggagt agttcttcgt cgcgatgaag agcaatctcc cgacgagttg
      961 gttgagaaac taatcgcaac tggttacgtg cgtgaggatc ctgtttccgg aatcggcggg
//
LOCUS       DATCGC010001643         1705 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_256055, whole genome shotgun sequence.
ACCESSION   DATCGC010001643 DATCGC010000000
VERSION     DATCGC010001643.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1705)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1705)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1705
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256055"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1592)
                     /locus_tag="VIJ87_15690"
     CDS             complement(<1..1592)
                     /locus_tag="VIJ87_15690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445874.1"
                     /translation="MLKKTLALEGYGYAMWDWNFRIGVVNKPVTNKQTIADTYPATRP
                     VKFVGAGSFIIQSGRDLRYDPANLAPLGSGPSLLMKIASSSGTPIPYEMPVEGNRFSM
                     PIEAQLVAPLSVVGFKSDNISSLFPQPLKRPVFALPAIQSPVVPGQTHSTVWYFQTGE
                     GGSYVQQQLNGLGRWPDGQPFAPSYRIVASISTDALFQPVTESHVHVDSLANNFLHQF
                     PYSTYNWELFLHAPLAISDHLASQQRFEDARRWLHAVFDPTTGKKDKNKIPQFWRFLP
                     FDNTTQPVEIAKLLSWLADPNMVDPRDTQTIEDQLNWQVKEWKKNPFMPHAIARLRPS
                     AYQWYTFFAYLEVLIGWGDQLFRRDTRESVNDATLLYVLAAKLLGPRPRTVPPSTPPY
                     ELTYRLLQGDPNQIDSFSNAWVNYADLPGVKQLASAQADASRATQSFALMKTSNQPSD
                     HVPVPLPNTSSILSNLSSLSALAFCIPQNDKVTEFYDRLEKRLFDIRNCRNIDGVFRE
                     LPLYQPPIDPLLLIRARAAGLD"
BASE COUNT          409 a          415 c          479 g          402 t
ORIGIN      
        1 atatccaagc ctgctgcacg agcccttatt agcagcagtg gatcaattgg tggctgatac
       61 agcggcagtt cgcggaagac cccatcgatg ttccggcagt tgcgaatatc aaacaatcgc
      121 ttttcaagtc gatcatagaa ctcagtcacc ttatcgttct ggggaatgca gaaagcgagt
      181 gcactgagcg aagataagtt tgagaggatc gacgaggtat tcggtagtgg aacggggacg
      241 tgatcactcg gctgattcga agtcttcatc agagcaaaac tctgggtagc gcgcgaggca
      301 tcagcctggg cgctggcgag ttgtttgacg ccaggcagat cggcatagtt cacccacgcg
      361 ttgctaaaac tatcgatctg atttgggtca ccttgcagta aacggtaggt caactcatag
      421 ggtggtgttg aagggggaac cgtgcgtggc cgtggaccga gcaacttggc tgcaagcacg
      481 tagagcaagg ttgcatcgtt taccgactcg cgggtgtctc gacggaataa ctggtcaccc
      541 cagccaatca gaacttcgag gtacgcgaag aacgtgtacc actgatatgc actcggacgc
      601 agacgcgcga tcgcgtgtgg catgaatggg ttctttttcc actccttcac ctgccaattc
      661 agttggtcct cgattgtttg cgtatctctc ggatcgacca tgtttggatc cgcgagccag
      721 ctgagtaact tagcgatctc gacgggttgg gtcgtattgt cgaacggcag gaaccgccag
      781 aactgaggga tcttattctt gtcctttttc cccgttgtgg gatcgaagac ggcgtgcaac
      841 cacctacggg catcttcgaa gcgctgctgg ctggcgaggt gatccgaaat cgctaacggc
      901 gcatgcagga acaactccca gttgtaggtc gaatagggaa actggtgtaa gaagttattt
      961 gccaggctat caacatgtac atgggattca gttaccggtt gaaagagtgc atcagttgag
     1021 atggaggcca caatccgata actcggcgca aatggctgcc catcaggcca gcgacccaag
     1081 ccattgagtt gctgctgcac gtatgaacca ccttcgccgg tttggaagta ccacacggtt
     1141 gaatgcgtct gaccaggaac aacaggagac tgaatcgccg gtaacgcaaa aacgggtctc
     1201 ttcaatggtt gtggaaaaag cgagctgata ttgtcagact tgaacccgac gacactcagg
     1261 ggagcaacca actgagcttc aattggcatg ctgaatctat ttccttcgac cggcatctcg
     1321 tagggtatgg gtgttcctga ggaggacgcg atcttcataa gcagcgatgg gccgctgccg
     1381 agcggtgcga gattagctgg atcataacga aggtcacgtc ccgattgaat gatgaagctg
     1441 cctgcgccaa caaacttcac agggcgtgtt gccggataag tatcagctat cgtctgtttg
     1501 ttagtgacgg gtttattgac tacaccgata cggaagttcc aatcccacat cgcgtagcca
     1561 taaccttcga gtgctagcgt ctttttcagc accgtgggtt ttcggccagg ccaacggaat
     1621 gtgagtgtta tatctccccc attaataacc cctgaaggcc cttgctgtgg ttttggtgat
     1681 gtaaacgtaa accggccatc agatt
//
LOCUS       DATCGC010001644         1119 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_155608, whole genome shotgun sequence.
ACCESSION   DATCGC010001644 DATCGC010000000
VERSION     DATCGC010001644.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1119)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1119)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1119
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155608"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1025)
                     /locus_tag="VIJ87_15695"
     CDS             complement(<1..1025)
                     /locus_tag="VIJ87_15695"
                     /inference="COORDINATES: protein motif:HMM:NF039593.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal-binding domain-containing protein"
                     /protein_id="HEY5445875.1"
                     /translation="MISQLSLALCILFCGIIAALAGESGTPRKTETLDSSTEMAQVAE
                     QTRSLAMLSQVVMQLEHYVRNKDLSAIHNEDVILSAAATELFSQAGEITSNQGKDFKT
                     NLTTFCSRVSALHLAADLNQQANSEMELGKVLESFAKVKAHFPKQVVASVQAHLETFT
                     CPMHRDVVGKRTDFCPKCGMGLDQLTRILPAHSDFPRPGDQTVRASITTAEPLVVGKP
                     VAALLQLQRPDGDPVMPVDLIETHTKKIHLLIIDSSLTDYHHEHPVPTRNPGEYSFSF
                     TPGKPGSYRAWADLRPNPLGLQEYAMTDIPAATRGEPLTDRTVNFKTTVDGLNYELIL
                     PQKTISVG"
BASE COUNT          263 a          278 c          290 g          288 t
ORIGIN      
        1 cctaccgaaa ttgttttctg cgggagaatc agttcgtaat tcaaaccatc caccgtggtt
       61 ttgaaattga cggtccgatc agttaacggc tcgcctcttg ttgccgcagg aatatcggtc
      121 atcgcgtatt cctgaagtcc aagtggattc ggtcgtaggt ctgcccaagc tcgatagctc
      181 cctggtttgc ccggcgtgaa actgaaagaa tattcgccag gatttcgcgt cggcaccgga
      241 tgctcgtgat gataatccgt taggctgcta tcaatgatta agagatgaat cttcttggtg
      301 tgggtttcga ttagatcaac cggcatgacc ggatcaccat caggtctttg caattgaaga
      361 agcgccgcaa ccggtttgcc cacgactagt ggctctgccg tagtaattga agcgcgcacc
      421 gtttggtcgc cggggcgcgg gaaatcggag tgggctggta gaatccgggt tagctgatcc
      481 aaccccattc cacatttcgg acagaagtca gtccgtttgc cgaccacatc cctgtgcatc
      541 ggacaggtaa atgtttcgag atgagcttgg acggaggcga cgacctgttt cgggaaatgc
      601 gctttcactt tggcaaacga ttccaaaacc ttgccaagct ccatttcgga attcgcttgt
      661 tgatttaagt ccgcagcgag atggagagca ctgacacgcg aacaaaaggt cgttaggtta
      721 gtcttgaaat ctttgccttg gttcgacgta atctcgccag cttgagaaaa tagttccgtc
      781 gcggccgcac ttagaatcac atcttcgtta tgaatagcgc ttagatcctt gtttcggacg
      841 tagtgttcga gttgcatcac tacttgcgat agcattgcga gcgagcgcgt ttgctcagcg
      901 acttgcgcca tctcggtcga actatcgagc gtctcagttt ttcggggcgt gccgctctca
      961 cccgccaagg cagcaattat cccacaaaag agaatgcaga gggccagact cagttgagaa
     1021 atcaacctaa tccatttctg atctaatcga gaccaattga cggaacgcat ttagtacaac
     1081 aatgggatca aacgtttcgt tcgctccatg taagcgcgg
//
LOCUS       DATCGC010001645         1171 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_256085, whole genome shotgun sequence.
ACCESSION   DATCGC010001645 DATCGC010000000
VERSION     DATCGC010001645.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1171)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1171)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1171
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256085"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..513)
                     /locus_tag="VIJ87_15700"
     CDS             complement(<1..513)
                     /locus_tag="VIJ87_15700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002621977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HEY5445876.1"
                     /translation="MSFPLLSTLRSSDLAVDLGTANTLVYAKGRGVVLSEPSIVAINK
                     VTNSVEAVGKEAKEMLGRTPGNIVAIRPMRDGVIANFEVTEKMLQHFIRKAHNGRTWV
                     SPRVVIGIPSEITQVERRAVEDSAYRAKASEVYLVEEAMAAAIGAGLPITEPHGNIVV
                     DIGGGTTDIAV"
     gene            complement(858..>1171)
                     /locus_tag="VIJ87_15705"
     CDS             complement(858..>1171)
                     /locus_tag="VIJ87_15705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445877.1"
                     /translation="HYATFNGKIKNPVLTMHTIIDPLVIVANESAYNETVSAAGRATD
                     LFQTYTTGNGHCNFTGPQILTAVGAIDNWVRNGVKPTAASFPAALGFAPGFVPPPFPQ
                     P"
BASE COUNT          269 a          290 c          318 g          294 t
ORIGIN      
        1 cacggctata tccgtcgtgc cgccgccgat atcaacgacg atgttgccat ggggctctgt
       61 gatcggaagt ccggcaccga ttgcggcggc catggcttct tccaccaggt aaacttcaga
      121 tgcttttgcg cgataggcgg agtcttcaac cgcacggcgt tctacttgag tgatctcact
      181 tggaatacca atcaccacgc gcggactaac ccacgtgcga ccattgtgcg ccttacggat
      241 aaagtgctgg agcatcttct ccgtaacttc gaaattggca attaccccat ctctcatcgg
      301 gcgaatcgcg acgatgttgc cgggggtccg gcctaacatc tctttggctt ccttgccaac
      361 agcttcgaca ctattggtca ccttattaat agcgacaatc gagggttcgc tgaggacgac
      421 gccgcgccct ttcgcgtaga cgagcgtgtt ggcagtgcca agatctacag ctagatcgct
      481 ggagcggagg gtagacagaa gcggaaacga catgttgcac ctcggggctt gaattggatt
      541 tgatctctgc ggggatgaga ccaggaagga cgcgtctccg ttggctcaac gaagactaac
      601 tacttttaaa ccattgagct taaagatgtc aagagacttt ctggaatgga attaggcgag
      661 ttccagtctt tttttcaggg ttcagcggga agaccttgct taggcttgcc tcaagtcaca
      721 tctagcgtga gtcggaagta acttggttcg tgtttagttc gtgtgacttc gtggattgtt
      781 ccatttgact ggaaaaacaa ggacgaacca cgaagtcaca cgaaccaatt cacgattcac
      841 gaatcacgaa tcacgattca cggttgcgga aatggtggtg gcacgaagcc gggagcgaag
      901 cctaaggcag ccggaaaact tgccgcagta ggtttgactc cgtttcgaac ccagttgtcg
      961 attgcgccca cagccgtgag tatctgcggt cctgtgaaat tgcagtgccc attgccagtt
     1021 gtgtatgtct gaaacaaatc cgttgctcta ccggcggcag aaaccgtctc gttataggct
     1081 gattcgttcg cgactatgac aagtgggtcg atgattgtgt gcatcgttag aacaggattc
     1141 ttgatcttgc cgttaaacgt tgcatagtgt t
//
LOCUS       DATCGC010001646         1412 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_256101, whole genome shotgun sequence.
ACCESSION   DATCGC010001646 DATCGC010000000
VERSION     DATCGC010001646.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1412)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1412)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1412
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256101"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..749
                     /locus_tag="VIJ87_15710"
     CDS             <1..749
                     /locus_tag="VIJ87_15710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445878.1"
                     /translation="HYLDFLGREPDPAGLTFWTNELTSCGVVQSCIEGKRTNVSAAFF
                     LSVEFQETGYLVYRMYRSAYGNLPGTPIPLTLNEFTPDRQRVAQGIVVGVGNWQAQLE
                     SNKSAFALDFVSRARFITAYPTTMTPTEYVDGLFATAGIAPSPNERAAAIAEFGVAAT
                     SADAPARARVLRRVAENAVLSQREFNRAFVLMQYFGYLRRDPNVAPDSDFIGYEFWLA
                     KLNQFNGNFIDAEMVKAFLLSSEYRHRFGP"
     gene            complement(773..1087)
                     /locus_tag="VIJ87_15715"
     CDS             complement(773..1087)
                     /locus_tag="VIJ87_15715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445879.1"
                     /translation="MGVTTSALALVKEVAIAAHAPRFLYLHWPFGHALGEPGNIAQQR
                     AVLHDMLSMATSAPRPGLVVDLPYKWRREKYPSVIDWGTPGDAVVSQLSLLSPQDRGE
                     KS"
     gene            complement(1136..>1412)
                     /locus_tag="VIJ87_15720"
     CDS             complement(1136..>1412)
                     /locus_tag="VIJ87_15720"
                     /inference="COORDINATES: protein motif:HMM:NF019003.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050485 - oxidoreductase activity, acting
                     on X-H and Y-H to form an X-Y bond, with a disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycine/sarcosine/betaine reductase
                     selenoprotein B family protein"
                     /protein_id="HEY5445880.1"
                     /translation="SFRVIPNDAQPEDLAISHQAYDRTDALKDINLVFPIERLRELAA
                     EHVIGRLAANHYGFGLMGSAKRLMPSLKEVARRISESGVDLALLVPA"
BASE COUNT          332 a          371 c          378 g          331 t
ORIGIN      
        1 aacactatct cgattttctg gggcgtgaac cggaccccgc cggtcttaca ttttggacaa
       61 atgagctaac ttcatgtggc gtggtccagt cgtgcattga aggcaaacga acaaacgtct
      121 cggccgcttt ctttctctca gtggaatttc aggagaccgg atacctggtc tatcggatgt
      181 acagatcagc ctacggaaat ttaccgggta ctccaatacc actgacgctt aatgaattta
      241 ctcccgacag gcagcgtgtc gcacagggca tcgtagtcgg agtgggcaat tggcaagcgc
      301 aactggagag taacaagtca gcattcgcgt tggattttgt ttcgcgagcg agattcatca
      361 ctgcgtatcc tacaacgatg actccgactg aatacgtcga tggattgttt gcgactgcag
      421 gaatcgcacc gtcgccgaac gaaagggcag cagcgatcgc agagtttggt gtggcagcga
      481 cgtctgctga tgcgccggct cgtgcgcgag tgttgagacg tgtggctgag aatgcggttt
      541 tgagccaacg ggaattcaac cgggcctttg tgctgatgca gtatttcggt tacctgcgta
      601 gagaccccaa tgtcgcacct gactcagact ttattggata tgaattctgg ctggcaaagc
      661 taaaccagtt caatggcaac ttcatcgatg ccgagatggt gaaagcattt ctgctttcgt
      721 ccgaataccg tcacaggttt ggtccttaag agtcttgtca actagttatt cgtcacgact
      781 tctctccgcg atcttgcggc gaaagcaaag atagttgtga cacgacagca tcgccaggcg
      841 ttccccagtc aatgaccgac gggtattttt cacgtcgcca cttgtatgga aggtcgacaa
      901 ctagacctgg acgtggcgca ctagtagcca ttgaaagcat gtcgtggagc actgctcttt
      961 gctgggctat attgcccggt tcaccaagcg catggccaaa gggccagtgc aaatagagga
     1021 agcgcggcgc atgtgcggca atagctactt ctttcaccag agccaaagca gacgtcgtta
     1081 ctcccatcgc ctcaatctct cttgcgagca gtccgacgga ccgcgtgcag atcggtcaag
     1141 cgggcaccaa gagcgccagg tcaacacccg actcactgat acgccgggcc acttccttga
     1201 gcgaaggcat cagccgcttc gcacttccca tcaaaccaaa gccgtagtga ttcgcagcca
     1261 accgtccgat cacatgttct gctgcaagct cacgtagtcg ctcgattgga aaaaccaggt
     1321 tgatgtcctt gagcgcatca gttcggtcat aagcctgatg tgaaatcgca aggtcctcag
     1381 gctgtgcgtc gttaggaatg acgcggaaac tt
//
LOCUS       DATCGC010001647         1986 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_57660, whole genome shotgun sequence.
ACCESSION   DATCGC010001647 DATCGC010000000
VERSION     DATCGC010001647.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1986)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1986)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1986
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57660"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            133..1542
                     /gene="fumC"
                     /locus_tag="VIJ87_15725"
     CDS             133..1542
                     /gene="fumC"
                     /locus_tag="VIJ87_15725"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF008909.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004333 - fumarate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HEY5445881.1"
                     /translation="MSQESLAQTAKTRIETDSMGEIEVPSDCYWGAQTQRSLHHFNIG
                     DDRMPREMIRALGILKKAAALVNEELGKLSSDKAQLIAQACDEVIAGNLDEHFPLRVW
                     QTGSGTQTNMNANEVISNRAIELAGGVMGSKKPVHPNDDVNMSQSSNDTFPTAMYIAG
                     AEQLSKLIPRIQELHDAIDAKAKEFADVVKIGRTHLQDATPLTVGQEMGGWASLVERD
                     IERLKLALPGLLDLAIGGTAVGTGLNSHPEFGVRAAKKIAELTGLPFNSHPNKFAGLS
                     AHDELVFASGTIKTLAASLMKIANDVRWLASGPRCGLGELVLPENEPGSSIMPGKVNP
                     TQSEALTMVAVQVFGNDLATSFGGSQGNFELNVFKPVMIHNFLHSVRLLHDATHSFVE
                     FCISGLELNREQIDEHLKHSLMLVTALNPHIGYDKAAQVAKNAHKKKTSLRESAIELG
                     YLTGEEFDRLVKPEEMTHP"
     gene            1752..1985
                     /locus_tag="VIJ87_15730"
     CDS             1752..1985
                     /locus_tag="VIJ87_15730"
                     /inference="COORDINATES: protein motif:HMM:NF024763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin"
                     /protein_id="HEY5445882.1"
                     /translation="MPDKNDKVKENVCGNYYVDSSCIDCDVCRDTAPDNFIRSDENNY
                     SFVYKQPETEEEKALCEEALCCCPVEAIGNDGK"
BASE COUNT          514 a          504 c          527 g          441 t
ORIGIN      
        1 gccagaattt ctagggtgac gaagcggggg tacgctcggg gccaattctg accagcgccc
       61 caccgaggca tcctagccac cccgtctccc cacttgccaa tcccgtgctc ctcagccaag
      121 atcacttcac caatgtctca agaatccctg gcacaaaccg caaaaactcg aatagaaacc
      181 gactcgatgg gtgagattga ggtgccctcc gactgctact ggggcgccca aactcagcgc
      241 tcactacatc acttcaacat cggcgacgac cgcatgcccc gcgagatgat tcgcgcactt
      301 ggcattctca aaaaggccgc ggccctggtt aatgaagaac ttggcaaact ctcgtccgac
      361 aaagctcagc taatcgctca agcgtgcgac gaagtaatag caggaaacct cgacgagcat
      421 tttccccttc gagtttggca gacgggcagc ggcacccaga caaacatgaa cgccaacgag
      481 gtaatctcca atcgcgcgat cgaactcgcc ggcggtgtga tggggagcaa gaaaccggtt
      541 catccaaacg acgacgtcaa catgtcgcag tcgtcaaacg atacgtttcc aaccgcgatg
      601 tacatcgcag gtgcggaaca actgagcaaa ttgattccgc gaatccaaga actacatgat
      661 gcgatcgatg cgaaggcaaa agaatttgcc gacgtcgtta agatcggacg tacacacttg
      721 caagacgcga cacctttaac tgtaggtcag gaaatgggcg gatgggcaag tttggttgag
      781 agagacatcg aacgtctcaa actcgccctg cccgggcttt tggatctggc aatagggggt
      841 actgccgttg gaactggatt gaattctcat cctgaatttg gtgtgcgcgc ggcaaagaaa
      901 atcgctgagc taacagggct tcccttcaac tcacatccga ataagtttgc gggtttgtct
      961 gcgcacgatg aacttgtttt cgccagcggg acaatcaaaa cattagccgc ttcgttgatg
     1021 aagattgcaa acgatgtccg ctggttggca tcgggacctc gttgtggatt gggtgaactc
     1081 gtcctgcctg agaacgaacc aggctcttcg attatgcccg gcaaggttaa cccaacacag
     1141 agtgaagcgt taacgatggt tgccgtccag gtgtttggca acgatctagc aacgagcttt
     1201 ggcggatctc aaggcaattt cgagttgaat gttttcaagc cggtgatgat ccataacttc
     1261 ctgcactcgg tccggctcct tcacgacgcc actcatagct ttgttgagtt ttgtatttcc
     1321 ggacttgaac tcaaccggga acagattgat gagcacctga aacattcgtt gatgcttgta
     1381 acggcattaa acccacacat tggctacgac aaagctgcgc aggtagcaaa gaacgcacac
     1441 aagaagaaga cgagtttgcg tgagtcggct attgaactgg gctatctgac cggcgaagag
     1501 tttgatcgac tggtgaagcc tgaggagatg acacacccgt agcgacttgg aaggcagtag
     1561 gcaggagcag gaggcagggt agcgccgctt ttgtttactg ctttattttt gggtcgcttg
     1621 ttccagtacc gtcgaaaagt ggtatttata gtcttgagga gaggggcgta cgaggatcac
     1681 aagcaacggt caaacggacc tgcctactgc taattcctac tgcctcctga ttcgactgcc
     1741 ccctgatcaa agtgcctgat aagaacgaca aggtcaaaga gaacgtttgc ggtaattact
     1801 acgtagattc ctcctgtatc gattgcgacg tctgtcgcga cacagctcct gacaatttca
     1861 tacggtcaga cgaaaacaac tattcgtttg tctacaagca acctgaaacc gaggaagaga
     1921 aggcgctttg tgaagaagcg ttgtgttgtt gtccggttga ggcgattggg aacgatggta
     1981 agtgag
//
LOCUS       DATCGC010001648         1193 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_155638, whole genome shotgun sequence.
ACCESSION   DATCGC010001648 DATCGC010000000
VERSION     DATCGC010001648.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1193)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1193)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1193
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155638"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..251)
                     /locus_tag="VIJ87_15735"
     CDS             complement(<1..251)
                     /locus_tag="VIJ87_15735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445883.1"
                     /translation="MSKSMNSLLLNNATLVLPGAIQEYSSVLVADGKIASIVGRGKGA
                     KADVSIDLANQRLFPGFIDVHNHGAVGTDVMEATQADLV"
     gene            complement(372..>1193)
                     /locus_tag="VIJ87_15740"
     CDS             complement(372..>1193)
                     /locus_tag="VIJ87_15740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445884.1"
                     /translation="AFLSSAATNILDQIRPFRGYRSITMIQPRFNSNYNSLQISVQRR
                     FSGSSQINGAYTWAKNLTDNQTDRSTAPENSYDISLDRGRATLDRRHVATVNYIYELP
                     WYTSQQGFVGKALGGWQASGIVTLNTGLPFTVTTSNYDAAGLGNNPAAVAGNRPNVLC
                     DPNANAPQTRLQYFNIGCFQANPAANPTNLPNTPGNSPRGIVNGPPTKRVDFTMTKIL
                     AVSEGFRIQLRGEAFNIFNHTNFRALSTNVTATNFGQVTTVRDPRTVQLGIKLLF"
BASE COUNT          288 a          310 c          304 g          291 t
ORIGIN      
        1 ttaacgagat cagcttgcgt ggcctccatc acatcagtgc caaccgctcc gtgattgtgc
       61 acatcgataa accctggaaa cagtcgctgg ttggcgaggt cgatactgac gtccgcttta
      121 gctccctttc ctcgtccaac aatcgacgcg atcttcccat cggcaacaag aacagagctg
      181 tactcctgga tcgcacctgg caaaaccaac gtcgcgttgt tcagcaaaag gctgttcata
      241 gacttactca tcgccaatgg gcattaccat accagacgaa ctgaatgaaa atcagcaatt
      301 tcaaacaaaa cagtgcccgc aacgcgtttt agcgttgcgg gcacatttaa tgagaatttc
      361 gcagggtagc actagaacaa gagcttgatt ccgagttgta ccgtgcgtgg atctctaaca
      421 gttgtcacct gaccaaagtt cgtcgccgta acgttcgtgc tcagcgctct aaagttcgtg
      481 tgattgaaga tgttgaaggc ctcacctctc agctgaattc taaaaccctc actgaccgcc
      541 agaatcttgg tcatggtgaa gtccacgcgc ttggttggtg gcccattaac gattccgcgc
      601 ggggagttgc cgggagtatt cggcaggtta gtcgggttag ctgccggatt tgcctggaaa
      661 cagccaatgt tgaagtactg caatcgcgtc tgtggtgcat tcgcattcgg atcgcatagt
      721 acgttaggac gatttccggc aaccgccgcc gggttattgc ctagtcccgc cgcatcgtaa
      781 tttgaagttg tgacggtaaa cggaagacca gtgttcagcg tgacaatccc tgaagcctgc
      841 catccgccca acgccttacc tacaaagcct tgctgagacg tgtaccacgg caattcataa
      901 atgtaattca ccgtagcaac gtgacgacga tcgagtgtgg ctctccctcg gtccagacta
      961 atgtcgtagg aattctcggg agccgttgac cgatccgttt gattgtccgt cagattcttg
     1021 gcccaggtat atgcgccgtt aatctgtgac gatcctgaga agcgacgctg cacggaaatc
     1081 tgcaaactgt tgtagttcga attaaaccgt ggctgaatca ttgtgatcga ccggtaccct
     1141 cggaaaggac ggatctggtc gaggatgttt gttgctgcag acgaaagaaa tgc
//
LOCUS       DATCGC010001649         1135 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_27105, whole genome shotgun sequence.
ACCESSION   DATCGC010001649 DATCGC010000000
VERSION     DATCGC010001649.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1135)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1135)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1135
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27105"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..369)
                     /locus_tag="VIJ87_15745"
     CDS             complement(<1..369)
                     /locus_tag="VIJ87_15745"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY5445885.1"
                     /translation="MSPDTTLAHYTIIRKIGAGGMGEVYLAQDKKLDRKVALKILPAE
                     VASNQERMRRFVQEAKAASALNHPNIITIYEIDESDSRHFIATEFIEGETLRQRMKHR
                     HLKLDDLLEIAIQATGALAAA"
     gene            complement(545..778)
                     /locus_tag="VIJ87_15750"
     CDS             complement(545..778)
                     /locus_tag="VIJ87_15750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445886.1"
                     /translation="MAEELGALPIQSPFCGSLRSKKFFMLDGIASSAEDYIDAANHVW
                     CCETQEVIGPDNKGVSPGGCTPGRSCYTSAISE"
BASE COUNT          259 a          319 c          278 g          279 t
ORIGIN      
        1 cgccgcagcc agtgcacccg ttgcttgaat agcgatctcg agcaggtcat ccagctttaa
       61 gtgtcgatgc ttcatccgct ggcgcagcgt ctctccctca ataaattcag tcgcgatgaa
      121 gtgacgtgag tcgctctcgt caatctcata gatcgtgatg atgttgggat gattgagggc
      181 ggacgcagcc ttggcttcct gcacaaaacg gcgcatgcgt tcctgattcg acgcgacttc
      241 agcaggtaga attttcaggg ccaccttgcg atctagtttt ttgtcttgcg cgagatagac
      301 ttcacccatg ccacccgcac cgatcttgcg gataatcgtg tagtgggcga gcgttgtatc
      361 tgggctcatc gcttcgctca tgagattagg agttgtttag gtctagtgct tcgctcagga
      421 aagcccgtct gagtttggac tatggtaact caccaaaatg aaattttcac tattcgggta
      481 ggttcagctg tcaggcttct cacccacgga ggctcagagt tcgctgaggc acagaggcgc
      541 aacttcactc gcttatagca gacgtgtagc acgagcggcc gggcgtgcac ccaccgggag
      601 atacaccctt gttgtctggt ccaatcactt cctgagtctc acagcaccaa acgtgattcg
      661 ctgcatcgat atagtcttct gcgctactgg cgatcccatc gagcatgaaa aactttttcg
      721 atcgcagaga tccacagaaa ggcgattgaa taggaagcgc ccctaattct tcagccatga
      781 tcaattcccc ctaaataacg aactcgacaa tcagcaaaat gagtcaatca cagaacggga
      841 gcgaagcgac cgatgtcaat gcaccaagca ctcaatgtgg gttgacatcg atcgcttcgc
      901 tcccgatcga gtagtttgca gtaaacggca ccttaccgcg cgcggttaac tgacgttatc
      961 aaccctacac attcactccc gccgctttcg ccagcgctcg acgaaccagc gtctctgtca
     1021 aaggaacttt gtaagcattc ttctcgagcg gctgtgcgtc tctaagcgcg acctttgcgg
     1081 cctgcgcgag aacctcccgc gttaacgctt ttccaattag aaacttctct gcctc
//
LOCUS       DATCGC010001650         1553 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_256154, whole genome shotgun sequence.
ACCESSION   DATCGC010001650 DATCGC010000000
VERSION     DATCGC010001650.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1553
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256154"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1056)
                     /locus_tag="VIJ87_15755"
     CDS             complement(<1..1056)
                     /locus_tag="VIJ87_15755"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY5445887.1"
                     /translation="MTSRTQPDIRAITRLVPPSGNLVQGQSELTINPSLAQAASELIG
                     ASRNHYSPAEGVGELREAVAKKISAFNCLEVDPKATPLQLLITPGATAALIAIAHTHL
                     RDSSALVFEPYYPYHRRILNELGGTTNVLPLHGENLELDVDELRVRCREWKEREHLPL
                     RAIIACSPANPTGKVFSRTELEAIAAVCNEFDLLCIADEVYEHYVVGDRPHVSIATFD
                     GMWERTITVNSFSKSWNISGWRLGYVYGSADLIAPLNNTNNVFYVCSPTPLQLALAQV
                     LMSDPNYYSVLRDKFKSKRRVAVESLVSAGFQIYESGSAFYVWARIPQGYGDAVEFNQ
                     MLLGKGVAGVPGGAFADS"
     gene            complement(1247..>1553)
                     /locus_tag="VIJ87_15760"
     CDS             complement(1247..>1553)
                     /locus_tag="VIJ87_15760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445888.1"
                     /translation="VRIAFLLDIIFIASLLGLVTYGLSHLEIFSDKGTVWFHLVQVIG
                     VLGAIGTLAALINAIIAWSGKRWSIWVKLQATIMLLACLGLLWFSFAGGLLHFSSTY"
BASE COUNT          420 a          408 c          365 g          360 t
ORIGIN      
        1 actgtcagcg aatgctccac ccggtacgcc cgccactcct ttgcccaaaa gcatctgatt
       61 gaattcaact gcatccccgt agccttgagg aattcgtgcc caaacataaa aagcagatcc
      121 agactcataa atctgaaagc cggcacttac cagcgactct acagccacgc gtcgcttgga
      181 cttaaacttg tcgcgaagca ctgagtagta attcggatct gacatgagca cctgtgctag
      241 cgcaagctgc aaaggagtcg gagaacacac atagaaaacg ttgttcgtgt tgttaagtgg
      301 agctatcaga tcagcacttc cataaacata gcccagtcgc caacctgaga tgttccatga
      361 ttttgagaac gagttaacag tgatcgttct ttcccacatg ccgtcgaaag tggcaatcga
      421 aacgtgaggt ctgtcgccaa cgacataatg ctcatacact tcatcggcga tgcacaaaag
      481 atcaaactca ttacaaacgg cggcgattgc ttctagttca gttctgctaa agaccttacc
      541 agtaggattc gcgggagagc aggcgataat cgcacgtagc ggaaggtgct cacgctcctt
      601 ccactcacgg caacgcacgc gcagctcatc aacatcgagt tcgaggttct cgccatggag
      661 aggcagcaca ttcgtggttc cacccaactc attaagaatg cgccgatgat atggatagta
      721 gggttcgaaa acgagcgcag acgaatccct cagatgggta tgggcaatcg caataagtgc
      781 cgccgtcgca cccggggtaa tcaacaactg caaaggagtg gctttaggat cgacttctaa
      841 gcagttgaaa gcggaaatct tcttcgcaac tgcttctcgt aactcaccca ctccttctgc
      901 ggggctgtaa tgatttcgac tcgcgccaat caactcactt gcagcttgcg cgagcgatgg
      961 attgattgtt aattccgatt gtccttgtac aagatttcca cttggaggga ccaaccgagt
     1021 gatcgctcta atgtctggtt gtgttcttga cgtcatttcc cttgtcgcta ttccttgcgt
     1081 ggcttttaga ggcaagccac agatttaacg gataaacaca gatcgaacga aggaatttgt
     1141 tacttgcgat ctccttcgtt gatccatgtg ggccgtgaaa atctgtggct tcactgccta
     1201 atccccggcg gcttgtcacg ctggtcatca tagctgctcc accgaactaa tatgtcgaac
     1261 taaagtgcaa tagaccgccg gcgaaggaga accacagcaa gccaaggcac gctagcaaca
     1321 taattgtagc ttgtagtttt acccaaatac tccatcgctt accactccag gcgatgatgg
     1381 cattaatgag cgccgccagc gtaccgatag cacctaagac acctatgact tgaaccaggt
     1441 ggaaccatac agttccttta tcactgaaga tctcgaggtg acttagcccg taggtcacaa
     1501 ggcccagaag agatgcaatg aagatgatgt cgagcaagaa agcaatgcgc acc
//
LOCUS       DATCGC010001651         1293 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_191765, whole genome shotgun sequence.
ACCESSION   DATCGC010001651 DATCGC010000000
VERSION     DATCGC010001651.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1293)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1293)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1293
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191765"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(230..604)
                     /locus_tag="VIJ87_15765"
     CDS             complement(230..604)
                     /locus_tag="VIJ87_15765"
                     /inference="COORDINATES: protein motif:HMM:NF012417.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEY5445889.1"
                     /translation="MQKLNLQEKLAQINDHWNPRIAGELNGQYVKLVKFQGPFTWHHH
                     AHEDELFMVIKGRFRMDYRDDKNANQQTWIEEGEMIIVPRGVEHCPVSEEECHVLLFE
                     PMSTLNTGNVRDGFTKEALETI"
     gene            complement(806..1246)
                     /locus_tag="VIJ87_15770"
     CDS             complement(806..1246)
                     /locus_tag="VIJ87_15770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445890.1"
                     /translation="MVRRSTLIILFVFLSSLSSCQSYTSGLQQSVARADETAALAALH
                     AISLAQRTYSLTNSGEYGTLKQLSDGGFLDARYGAGTPIRDYVVTCTVTPKNSGAPEG
                     SYSCNADPDKPVERPGRHLYIESVSDGIHVNDTQRATAADKVMQ"
BASE COUNT          312 a          331 c          322 g          328 t
ORIGIN      
        1 agcagaatcg tggcgaatgt tccaagccac actgttccaa gtcttttttg agcaacgttc
       61 attgagtgcc tcctgacgaa gagtcagtta atactcgcat taaaagagag cgggcgcatt
      121 aggaaaagtg ttcagacctt cggtcatggg tctgagatcc gcttggtctt cgatagtgtc
      181 gacggttcag ggaagtcaaa ggccaaagac caaagaccaa agaccaactc tagattgtct
      241 ccaacgcttc cttcgtaaac ccatccctga cgtttcctgt attcagtgtc gacatgggtt
      301 caaacagcaa aacgtgacat tcctcttccg agaccgggca gtgttcgacc ccgcgcggga
      361 cgatgatcat ttcgccttct tcgatccacg tttgctggtt cgcgtttttg tcatctcgat
      421 aatccattct gaaccggccc ttgattacca tgaagagctc atcttcatgt gcgtgatggt
      481 gccaagtgaa cggcccttga aacttgacca gcttcacgta ttgtccgttc agttcaccag
      541 cgattcgtgg attccagtga tcgttgattt gagcgagctt ttcttgaaga ttgagttttt
      601 gcatgactaa tgtccgatat gcttcagctt gtcctctcct cacaaagagt cagccaaaga
      661 tgaacaccga taagcacaga taacataaga cagcgtgggg ctaataagcg acgtttcacc
      721 cttccaattc gtgacatctg tgatgatctg tggctcgtct ccccagatgg caacgacaaa
      781 acaacgcata tcggacacaa tgcccctact gcattacctt atcagcggct gtcgcacgtt
      841 gcgtgtcatt tacgtggata ccgtcagaca ccgactcgat gtagagatga cggccgggtc
      901 gctcgactgg tttgtctgga tcagcattgc aggagtagga gccttcgggt gcgccagagt
      961 ttttgggtgt gacagtgcac gtcacgacgt aatccctaat gggtgtgccg gcgccatagc
     1021 gagcgtccaa aaatccgcca tccgacaact gcttgagcgt cccgtattcg ccactattcg
     1081 tcagactgta ggttcgttga gccagggaaa tagcatgcaa agctgcaagc gcggcagttt
     1141 cgtccgctcg tgcgacgctt tgctgtaagc cactcgtgta cgactggcaa ctgctcaacg
     1201 atgacaggaa tacaaagagg atgataagtg tcgacctgcg aaccatgggg gagtctcctt
     1261 atactgaggt ttgaatgctt ccaaaacatc gca
//
LOCUS       DATCGC010001652         1264 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_421883, whole genome shotgun sequence.
ACCESSION   DATCGC010001652 DATCGC010000000
VERSION     DATCGC010001652.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1264)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1264)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1264
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_421883"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            253..>1264
                     /locus_tag="VIJ87_15775"
     CDS             253..>1264
                     /locus_tag="VIJ87_15775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445891.1"
                     /translation="MKRIIVNWLFVVGLALAFAVIGNAQQQASSSGRLLGARDIAEMS
                     LKGRQLTSEEADAFEQTLAKDPNDLTARFNLISYYSAHFMEKPMKAKKCEHVLWTIEN
                     IPSSQLLHWVAEGRLHKVDACFEAGAALWGKQLEANKGNLAVLQNAIDFFLIPDKPHA
                     EELIRQGVLAEPTKPEWPRQLGQLYSLEMSTANGDARREFAKKAYDQFEQALKLTVDD
                     LGKRQLRMELARTAFEAGETSRAVSFATEILGELPKENAAWARNDLSHRAHVILGRAA
                     LRNGDVAEGKLQLIAAGQVEGSPVLSTFGPSMLLAKELLDKGERETVLEYFAEVGAFW
                     KNV"
BASE COUNT          318 a          288 c          364 g          294 t
ORIGIN      
        1 actttgtgtc tggatatgtt gagtctctcg gacaagccac acgctaccgc gttgtggtac
       61 tgactccctt gctacggcaa cgctcttgtt gcaagagact tgatcagaac agcctgaagt
      121 ctgtgccacg cgcgaattaa gagctacaat gctggcccta acaacgggaa ctattgtcgg
      181 atatcagcgt gtgtggtttc tggcacttgt ctttcacacc agccttaact gtgtcgcgaa
      241 cgaggtgaac gaatgaagcg cataatcgta aattggctgt ttgtcgttgg tctcgcattg
      301 gctttcgccg tcataggaaa tgcacaacag caagcgagtt cttctggacg tttgcttgga
      361 gcacgcgaca tcgctgagat gtcgctcaaa gggcgccagc tgacgagcga agaggccgac
      421 gcctttgagc aaacactagc gaaagatcca aacgacttaa cggctcgctt caacttgatt
      481 agttattact cggctcactt catggagaag ccgatgaagg caaagaagtg tgaacacgtg
      541 ctctggacta tcgagaatat tcccagttct cagttgcttc attgggttgc ggaaggacgg
      601 ctacacaagg tcgacgcatg ttttgaggct ggagccgctt tgtgggggaa gcaactcgag
      661 gcgaacaagg gaaatctcgc agtgctgcaa aacgcaatcg acttcttcct gattccagac
      721 aagcctcacg ccgaagagtt aattaggcag ggtgttctcg cggagccaac aaaaccggag
      781 tggccgcgtc aacttggtca gttgtattcg ttggagatga gtaccgcgaa cggagatgcg
      841 cgtcgggagt ttgcaaagaa agcctacgat cagtttgagc aagctttaaa gttaactgtg
      901 gatgatctgg gcaagcgaca gttgcgcatg gaactcgcgc gaaccgcgtt tgaagcaggt
      961 gaaacatcga gggccgtatc gttcgcgacc gaaatacttg gtgaactccc aaaagagaac
     1021 gcggcatggg ctcgtaatga tctgagtcat cgtgcgcacg tgattctagg aagagcagca
     1081 cttcgcaatg gagatgtggc cgaaggaaaa cttcagctga ttgcagccgg gcaagttgaa
     1141 ggttcgccgg ttctcagtac ttttggtcca agcatgttgc tggcgaaaga actactcgat
     1201 aagggagagc gtgagactgt gctggaatac tttgccgagg tcggtgcgtt ttggaagaac
     1261 gtaa
//
LOCUS       DATCGC010001653         1547 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_388853, whole genome shotgun sequence.
ACCESSION   DATCGC010001653 DATCGC010000000
VERSION     DATCGC010001653.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1547)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1547)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1547
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_388853"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(117..1124)
                     /locus_tag="VIJ87_15780"
     CDS             complement(117..1124)
                     /locus_tag="VIJ87_15780"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY5445892.1"
                     /translation="MIVNDPIKNFDFLWETFHNRYPFFELRKVDWKQQFELYRAKVTN
                     RTNDDELFEIFCDMLGPLNDGHVELIANASGKRKKRYFRPEEKPRFHQAFEKQEIEQL
                     FKTTAKTLADNGFGLPEETDAWMLHYSRSQEFGYIRILELEGVKKERLNAALDKIARD
                     FDGLKGFIIDIRDNPGGDDSTAITIINRFCDHKRVAFHRQTKIGPETDDLTPLKTWYL
                     EPEGDAQFTGPIVLLTCDSVFSGGEAFALAIKELPYVTIIGDHTNGIFSYQLEKKLPN
                     GWEVRLSYQIYLSADMVCYEGKGVPVDIELLNSRVDIENGIDPLIIKALEVLRTRNAE
                     R"
     gene            complement(1127..>1547)
                     /locus_tag="VIJ87_15785"
     CDS             complement(1127..>1547)
                     /locus_tag="VIJ87_15785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445893.1"
                     /translation="IAAQLFDYGAEGWLWALFGLLHRQYVDSKAAAKVDSVPQTKKQT
                     FRLLRLLACAAAAVVYVWQEQLEFDFPQVQLIVFILGVLVMSVSLSLFLRGRSRFQPP
                     EKIAVALRFIGRHTLEIYAIQLAASEIIVWFVPSLAP"
BASE COUNT          399 a          396 c          350 g          402 t
ORIGIN      
        1 gatccacgaa atcacacgaa ctaacaccaa cgaaaatccc acgccaaatt agaatgtttg
       61 acagtctccg tcctgcgtgg gattcccgac ttcttgttac aaagcaatgc ggaaaatcat
      121 ctctcagcat tcctggtcct caacacttca agtgccttaa ttattaacgg atcgatacca
      181 ttttcaatgt cgacccttga gttgagtagt tcaatatcga caggaacacc tttaccttcg
      241 tagcacacca tatccgccga caaataaatc tggtaggaca aacggacttc ccagccattg
      301 ggaagttttt tttcgagctg atacgaaaaa atcccattgg tgtgatctcc tatgatggtt
      361 acataaggca gttcctttat tgccagggcg aaggcctctc caccgctaaa aacagaatcg
      421 caggtcaaca gtacaattgg tccggtaaat tgggcatcgc cttcaggttc caggtaccag
      481 gttttcagag gcgtaaggtc atccgtctcc ggtcctatct tcgtctgcct atgaaaggca
      541 actcgcttgt gatcgcaaaa tcgattgatg atcgtgatcg ccgtactatc gtccccaccg
      601 gggttgtcgc ggatatcgat aatgaaacct ttcaacccat cgaagtcacg agcgatctta
      661 tccagagcgg cattcaatct ttccttttta acgccttcca actcgaggat tcgaatgtag
      721 ccaaactctt gagaccttga ataatgaagc atccaggcat cagtttcttc tggtaaccca
      781 aacccattgt ctgcaagagt cttcgcggtc gtcttgaaca gctgttcaat ttcttgtttt
      841 tcgaacgctt gatggaatcg aggtttttct tcaggccgaa agtatcgctt tttccgcttc
      901 ccgcttgcat tggcaatcag ctcaacatgt ccatcgttta aaggtccgag catgtcgcaa
      961 aagatttcga agagctcgtc atcgtttgtc ctattcgtga ctttggctcg gtagagttcg
     1021 aactgctgtt tccagtcgac cttcctcaat tcaaaaaatg ggtagcggtt gtggaaggtc
     1081 tcccagagaa aatcgaaatt cttgatgggg tcgtttacga tcatgatcaa ggtgcgagac
     1141 tgggcacaaa ccatacgatg atttcggacg ccgcaagctg gattgcgtaa atttccagtg
     1201 tgtgtcgtcc gatgaagcgc aacgcgacgg cgatcttttc tggaggttgg aagcgactgc
     1261 gcccgcgcag gaatagactc aggctaacgg acattaccaa cactcccaga atgaagacga
     1321 tgagttgaac ctgaggaaaa tcaaattcca attgttcttg ccagacatag acaaccgcag
     1381 ccgccgcgca ggccaacaag cgcagtagac ggaacgtctg tttcttcgtt tgaggcacgc
     1441 tgtccacttt ggctgccgct ttgctgtcga catactggcg atggagaaga ccgaataaag
     1501 cccatagcca cccctcggcg ccataatcga aaagctgcgc cgctatt
//
LOCUS       DATCGC010001654         2000 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_256237, whole genome shotgun sequence.
ACCESSION   DATCGC010001654 DATCGC010000000
VERSION     DATCGC010001654.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2000
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256237"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..298)
                     /locus_tag="VIJ87_15790"
     CDS             complement(<1..298)
                     /locus_tag="VIJ87_15790"
                     /inference="COORDINATES: protein motif:HMM:NF012804.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HEY5445894.1"
                     /translation="MSENFAQLASGIVSLAKDLHSCGWLLGTSGNLSAVVERDPIRLA
                     ITPSGADKGELLSEQILLIDEEADVVGNAESIAGKPSDESRLHVALVKAQNAGAV"
     gene            685..>2000
                     /locus_tag="VIJ87_15795"
     CDS             685..>2000
                     /locus_tag="VIJ87_15795"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY5445895.1"
                     /translation="MNQHTVSFIRFFALSLVLVCASGVANAQFKASIQGTVSDSTGGL
                     VPGVKIKLTDLGTGKSQEVATNEEGFYRIGGLGPGKYTVVAEKEGYKRSILENVSVEA
                     ENVQAVNVVLETGDITATVTVTDEATAKLETENANVNRGITEQEIRRLPQVGRDPYEL
                     ARLTPGIFGDSARSGNGNSAGLPNSPGPGGSNNSIFQAENQPQISANGQRISANNFQI
                     DGVSVNSLTHGGAAVVTPNQESVKEIQISSSTYSAEDGRNSGAQIKVVSQNGTNSFHG
                     SLFLKYDSPKLNAFNKYPNDFGRGQTERVERMFRQFGGSVGGPLYLPHFGEGGPITVG
                     GKNKSFFFLSYEGLRENSTNSSVSYVETSQFRQNIINARPGGVSARILADPLVQPRIG
                     GTIQSSCVDVNGPCQVVGTGLDVGSPFGGLGQYVSLGNIAGGGLDG"
BASE COUNT          508 a          515 c          497 g          480 t
ORIGIN      
        1 caactgcccc tgcgttttgt gccttgacta gtgcgacatg caatcgactt tcatctgaag
       61 gcttgcctgc aattgactcg gcgttaccga ctacgtctgc ttcttcatca atcaacaaaa
      121 tctgctcgct taacaactca cctttatcgg ccccactcgg tgttatcgcc aaacgaattg
      181 ggtctcgctc aactaccgca ctcagattcc cacttgtgcc aagcagccat ccacacgagt
      241 gcaggtcttt cgccaacgaa acaatgccag aagcaagttg tgcaaagttc tcagacatag
      301 tttgccatat tgatcagatg cgacgaggcg gctgtcaagc tgtgcgtgtg gcttagactt
      361 cagtctatgt gagcaaaaat tccaagttga tagtcttgat tcaatgattc tttagtacgc
      421 cgtcgccctc gatcatccat tatcagcact cagactgaag tctgagccac acgcaattga
      481 agtttggccc tttacgtgct attaacaggt atccccagcg cgtctgcgca ccttaaatcc
      541 cccaaaacga tctagtccta aggtagatcc cccaaccgaa atttccccgg gttacataat
      601 cgcgaacgag tcgaccttca cgatgactct gccgccacgc tttattgcag tacaagcgaa
      661 ccgttcagga agggccttcc agaaatgaat caacatacag tttcttttat tcgctttttt
      721 gctttgagtc ttgtgctcgt gtgtgcttca ggagttgcca acgcgcaatt caaagccagc
      781 attcagggaa cagtttcaga ctccaccgga ggactggttc caggagtaaa gataaaattg
      841 acggacctgg ggacggggaa gagtcaggag gtcgccacca acgaagaggg tttctatcgt
      901 atcggtggtt tgggaccagg taagtatacg gtggttgctg agaaggaagg atacaaacga
      961 tccatactcg agaatgtttc agtggaagct gaaaatgttc aggccgtcaa tgtcgttctt
     1021 gaaactggtg acatcaccgc aaccgtcacc gtcaccgacg aagcgacagc taaacttgaa
     1081 actgaaaacg ccaatgtcaa tcgaggtatt accgaacaag agataagacg gttgccgcag
     1141 gttggtcgcg acccgtacga attggcgcga cttacgccgg gcatcttcgg cgattcagcc
     1201 cgcagcggca acggaaactc ggccggcctt cctaactccc ctggccctgg cggatctaac
     1261 aattcgatct ttcaagctga gaatcaaccg cagatttcag cgaacggcca acgcatctcc
     1321 gcaaacaatt ttcagatcga tggtgtcagc gtaaacagtc ttacgcatgg tggtgcggca
     1381 gtagtcacgc caaatcaaga atccgtcaaa gagattcaga tctcttcgtc gacttactca
     1441 gctgaagacg gaagaaactc cggcgcgcaa ataaaggtcg tgtcgcaaaa cggaacgaac
     1501 tcttttcacg gaagtctctt cctgaagtac gacagtccga aattaaatgc attcaataag
     1561 tatccaaacg attttggtcg tggacagact gaacgagtcg agcggatgtt caggcagttt
     1621 ggcggcagcg tcggcggtcc cctctacctg ccacattttg gagaaggcgg cccgataaca
     1681 gttggtggaa agaacaaatc gttcttcttc ctttcctacg aaggtctgcg cgagaattcg
     1741 accaattcct cggtgtcgta cgtcgaaaca tcgcaattca ggcaaaacat tatcaatgct
     1801 cgacccggtg gcgtgagcgc gcgcattctt gcagacccgc ttgttcaacc acgcattggc
     1861 ggaacaatac aatcgtcgtg tgttgatgtg aatggtcctt gccaggttgt tggcacaggt
     1921 ctcgacgtcg gatcaccgtt tggggggttg ggtcagtatg tgagtctggg aaatattgcg
     1981 ggtggcgggc tcgatggcat
//
LOCUS       DATCGC010001655         2123 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_489867, whole genome shotgun sequence.
ACCESSION   DATCGC010001655 DATCGC010000000
VERSION     DATCGC010001655.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2123
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_489867"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2123)
                     /locus_tag="VIJ87_15800"
     CDS             complement(<1..>2123)
                     /locus_tag="VIJ87_15800"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY5445896.1"
                     /translation="LLATGAPFTPGTVIGSRFFLTGAPIPLNTTNSLGQPIAFRPLRN
                     LQTVFPITDRTTFNSFRLDHAITSRHQFSFRFGYNPSTISGIQVESQNQSLGQNDFSR
                     TGIQKLRDFSAVTTLTSTLSNNAINEARFNFGERRATFKSQNGDAVAFNISGTAFIGR
                     ELFSPVVRTETRYEYTDNLNLVHGNHNFKFGGDIAYVRIPAATFELNFAGLYNFGGLS
                     ATTLNAAFAAVPGAPDFTPVQQYGLGFPANYIQGFGDPVSKISNKPLAFFAQDSWKIR
                     PNLTVNYGVRYDYEITEQISTLPLTDPLSGISLTAAQVLAAQDAMGVQQGFPRDKNNW
                     APRLAVAWDPWNNGKTVFRGAFGMFYDHPLLAIAFNSDIADAVQQQQGILTPGSPSPT
                     ALLNAVQVFQGTVVVCNFPGAIPGVNCTPGAASGAQYQNGRQRFNDQTFPGFGPVLPF
                     TLPVQKNFEYAYANQGNFTVERELTKDMTLSGSYIYVSARHLPHPLDINAPRTELQIQ
                     NFFRLAGRNPVSTTEAVAFSIPTSGAACPGGVPLQCFTLATPTGAPAFPNAGQTFAII
                     IPGMITAPLTNLGSRVVNAGIANFFRPSAPNYFLAQALSGGLVTPAVLNSALPGSLRS
                     PGTVSPFGSINAQTSDGNSSYNALNVDLKKRFSNHYQFLASYTWSHSIDDSSDLQTLL
                     LPQDNRNFAAERADSLFDQRHRFVF"
BASE COUNT          523 a          503 c          604 g          493 t
ORIGIN      
        1 ctaaaaacaa accggtgacg ttggtcaaac aatgaatcag cacgttccgc tgcgaagttg
       61 cggttatcct gcggcaacag aagcgtctgc aagtcggatg aatcgtcgat cgagtgcgac
      121 caggtatacg aggcgaggaa ctggtagtgg tttgagaaac gtttcttcaa atctacgttc
      181 aacgcgttgt agcttgaatt gccgtctgat gtctgcgcgt tgatcgagcc gaacggagaa
      241 actgtacctg gtgatcttaa cgatccgggt aacgccgaat taagcacggc tggagtcact
      301 aaacctcccg acaaagcctg ggcgagaaag taatttggcg cgctcggacg gaagaagttg
      361 gcgatacctg cattcacaac tcggctaccg agattcgtga gcggtgcggt aatcatgccc
      421 ggtataatta tcgcgaaggt ttggcccgca tttggaaatg cgggagcacc ggtcggtgta
      481 gccaacgtga agcattgaag cggcacgcca ccaggacacg ctgcaccgga agttggaatc
      541 gagaacgcga ccgcctccgt tgtactcacg ggattgcgtc cagcaagtcg gaagaagttt
      601 tgaatctgaa gttctgttcg gggagcgttg atgtccaacg gatgcggaag gtgacgtgca
      661 gaaacgtaga tataactgcc cgacagggtc atgtccttcg tgagttcacg ctcaactgtg
      721 aagttacctt gattggcgta ggcgtattca aagttcttct gaacgggaag cgtaaaggga
      781 agcactgggc caaaacccgg gaacgtttga tcgttgaatc gttgtcttcc attttgatac
      841 tgggccccag aagcagcgcc tggagtacag ttaactcctg gaattgcgcc aggaaagtta
      901 cagacaacga ctgtcccctg gaatacctgc actgcattga gtagcgccgt tggagatgga
      961 ctacccggtg tcagaatgcc ctgttgttgt tggaccgcat cggcaatgtc ggagttgaaa
     1021 gcgatcgcta acagcggatg atcgtagaac attccaaatg caccgcgaaa gactgtcttc
     1081 ccgttgttcc atggatccca ggcaactgcc aaacgaggcg cccaattgtt cttgtcacgc
     1141 ggaaagcctt gttgaactcc catcgcatcc tgtgcagcaa gaacctgcgc tgccgtcaga
     1201 ctgatacccg acaaaggatc tgtaagtggc agcgttgaaa tctgttcagt gatttcgtaa
     1261 tcgtaacgaa caccatagtt cacagtcagg tttggccgga tcttccagga gtcctgtgca
     1321 aagaaagcca ggggcttgtt gctgatctta ctaaccggat cgccaaagcc ctgaatgtag
     1381 tttgccggaa atccgagtcc gtattgctga acgggagtga aatccggagc accagggacg
     1441 gctgcaaaag cggcgttcaa ggtagtcgct gacaatccgc caaagttgta gagtcccgca
     1501 aagtttaact cgaaggttgc cgctggaatt cgtacgtagg cgatgtcgcc accgaatttg
     1561 aaattatggt ttccgtgaac gagattgaga ttatccgtgt attcgtaacg agtttccgtt
     1621 cgcactacag gcgagaacaa ctcgcggccg ataaacgctg tccccgaaat attgaacgcg
     1681 actgcgtcgc cgttctgcga cttgaaagtt gcgcgtcgtt caccaaagtt gaaacgcgct
     1741 tcgttgatgg cgttgttgga aagcgttgaa gtcagcgtcg tcactgcgga gaagtctcgc
     1801 agtttctgaa taccggttcg cgaaaaatcg ttttgaccca gcgactggtt ctgcgactcg
     1861 acctggatgc cgctaatggt gctggggtta tagccaaacc taaaactaaa ttgatgtcgt
     1921 gaggtgatcg cgtgatcgag tcggaatgaa ttgaaggtcg ttcggtctgt tatcggaaat
     1981 acagtttgga gattgcgaag cggtctaaac gctattggct gacccaggct gttcgtggtg
     2041 ttcagcggta tcggtgcacc cgtcaaaaag aacctgctgc caatgactgt gccgggagtg
     2101 aaaggcgctc ccgttgccag tag
//
LOCUS       DATCGC010001656         1597 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_191813, whole genome shotgun sequence.
ACCESSION   DATCGC010001656 DATCGC010000000
VERSION     DATCGC010001656.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1597)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1597
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191813"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..880)
                     /locus_tag="VIJ87_15805"
     CDS             complement(<1..880)
                     /locus_tag="VIJ87_15805"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEY5445897.1"
                     /translation="MSIASFRTRPARHSSAKGAAVCLLVLAVTLAGCITSHGPSTFYG
                     KIVVPRSQEFRWSDGGLPQTFDPAFAAAPPDTDAVRALFEGLTDYDPRTLAPVPAVAT
                     RWESSADGRVWTFYLRDDAKWSNGDKVTAADFVRSWERTLKIGPLAPHTELLSNIEGA
                     GTNHVISKGIVEPTEKRSSFGAEAISDQVLRVRLHEADASFPALVAHPVFRPVKVSAS
                     DATRRLEPRELVSNGAFQLSGTDNDRVLLERANTYWDGGSIALQRVAFVSSANAEEAL
                     AAYRAGDVDAVTNAPFE"
     gene            complement(891..>1597)
                     /gene="coaE"
                     /locus_tag="VIJ87_15810"
     CDS             complement(891..>1597)
                     /gene="coaE"
                     /locus_tag="VIJ87_15810"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: protein motif:HMM:TIGR00152.1"
                     /note="Dephospho-CoA kinase (CoaE) performs the final step
                     in coenzyme A biosynthesis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004140 - dephospho-CoA kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HEY5445898.1"
                     /translation="CVSVVNQSSVSFTAETQRRHKDLKPKTKDQFPQMLRVGLTGSIG
                     VGKSFVGSVFVELGCRLLDADATAREVVLPGTAGLAAVVKEFGPEVLQTDGTLDRKQL
                     GAVVFGDEQKRRRLYAILHPRIIEKQDQILQQWESEEPNGIGIVDAALMIESGGYKRF
                     DKLIVVHCRPEVQLERLMLRDGLSCDEAQKRIDSQMPQEEKQRYADYLIDTSDGFELT
                     RQRTKAVYDQLAKRQI"
BASE COUNT          389 a          439 c          395 g          374 t
ORIGIN      
        1 gctcaaacgg cgcattagta acagcatcaa catcgcccgc gcgataagca gccaaagcct
       61 cttcagcgtt cgcactgctc acaaaggcaa ctcgttgcag cgcaatggaa ccaccgtccc
      121 aatacgtatt ggcccgttcc aacaagacgc gatcgttgtc ggtgcccgaa agttggaaag
      181 cgccattcga aacaagttcc cggggttcca acctgcgcgt ggcatcggat gccgaaacct
      241 ttaccggccg aaacaccgga tgagcgacga gcgcagggaa actagcatct gcttcgtgca
      301 agcgaactcg aaggacctga tcactgatcg cctcggcgcc aaaactcgaa cgcttttcgg
      361 taggctcaac aattcctttt gagatcacgt gattcgtgcc ggctccttcg atgttagaaa
      421 gcaactctgt gtgcggtgcg agcgggccaa tcttcaatgt gcgttcccat gatcgcacaa
      481 agtcggcggc ggtaactttg tcgccgttgg accattttgc gtcgtcgcgc aaatagaaag
      541 tccagactct tccatctgcc gaagactccc agcgtgtcgc aaccgctggt acgggtgcca
      601 gcgttcgcgg atcgtagtca gttaatcctt caaacaatgc acgaaccgca tccgtatcgg
      661 gtggggcagc agcgaacgcc ggatcaaaag tctgtggcaa tccaccatcg ctccaacgaa
      721 attcctgcga acggggaacg acaatctttc catagaaggt cgatggcccg tggctggtaa
      781 tacaaccagc tagcgtaacg gcaagaacca aaagacaaac agcggcgccc ttagccgaag
      841 agtgtcgagc aggtctggtt ctgaaagatg cgatagacat tgggggtaga ttatatttgg
      901 cgcttcgcca gttgatcgta aactgccttc gtgcgttgcc gcgttaactc aaaaccatcc
      961 gaagtgtcga tcaaatagtc tgcatagcgc tgcttctctt cttgtggcat ttgcgagtcg
     1021 attcgctttt gagcttcatc gcaggataaa ccatctctca acatcagacg ctcaagctgc
     1081 acttcgggtc gacaatgaac gactatcaat ttgtcgaaac gtttatagcc gcccgattcg
     1141 atcattaatg ctgcatcgac aattccgatt ccgttgggct cttcgctttc ccattgctga
     1201 agaatctgat cttgcttttc gatgatacgc ggatgaagga tagcatatag ccttcgcctc
     1261 ttttgctcgt caccaaaaac aacggcgccc agttgttttc gatctaacgt tccgtctgtc
     1321 tgcaaaactt cgggaccaaa ttccttaact actgcagcga ggcccgcagt gcccggcaaa
     1381 accacttcac gcgccgtagc gtcggcatct aacaaacgac agccgagttc gacaaagacc
     1441 gagccgacga atgatttacc gacgcctatt gagcctgtta gtccaacacg aagcatttgg
     1501 ggaaattggt ctttggtctt tggttttaga tctttgtgcc tcctctgtgt ctctgcggtg
     1561 aagctgactg atgattggtt taccacagag acacaga
//
LOCUS       DATCGC010001657         2722 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_421952, whole genome shotgun sequence.
ACCESSION   DATCGC010001657 DATCGC010000000
VERSION     DATCGC010001657.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2722)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2722)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2722
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_421952"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(166..2667)
                     /locus_tag="VIJ87_15815"
     CDS             complement(166..2667)
                     /locus_tag="VIJ87_15815"
                     /inference="COORDINATES: protein motif:HMM:TIGR03434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5445899.1"
                     /translation="MGTMLNDFRFGIRMLLKNPAFTAVAVLSLALGIGANTAIFQLLN
                     AVRLKTLPVRNAHELAQVGLRASDLQLTRGSKGLLRYAPMTNPLWEQIRDRQLGFAGM
                     AAWGMAGFNLAQGGEVRPARGLWVSGDFFNVLGVQPELGRVFNQSDDQRGCTAPGVVI
                     SHGFWQSEFGGSSDVVGRNVTLSDRQLQVIGVTPPGFFGLEVGKSFDVALPICADAMF
                     SGANQRLDSGTNWWLMVTGRLKPGWTIAQANSQVSTISAPLFQQTLPSNYPASSVNDY
                     LNSKLEVVDGSSGYSILRDNYERPLWLLLAIAGLVLLITCANLANLLLARASTREREI
                     AVRQAVGASRFRIVRQLLVETILLAAIGTSLGLVLAQALGTFLVASIGTTRDVVFLDV
                     ALDLRVLGFTAGVAVLTCIVFGLTPALRATRVSPGAAMKAAGRGLTAGRERFSLRRGL
                     VVIQVALSLVLVASALLFSRSLNKLLKLDAGFNQENLLIARVGFNRLKIDPANRLAFR
                     GQVLERIKATPGVKDVSEMDSIPLTGGGRGNAVWLEGRTSADKVDASFNRVGVDYFKT
                     LDIPLVSGRSFSTTDSRSSTNVAIINQTLAQMLREPNPVGKRFVVEATPGEGETTYEI
                     VGMARDAKFEDLRESALPVVYLASFQDAYPSSGRQFLIRSNLPPTNLSASINQGLREF
                     NPGLDVNLQVFRSMVEESLLRERLMAKLSGSFGVLALVLASIGLYGLLSYGVTSRSKE
                     IGIRMALGAGTRNVLSLILHEAVLLVLIGVAVGVPVVLYVSRFAKTLLFDLSPTDPVS
                     LVIAGLVLMSVALVAGYLPARRATKVDPLVALRDE"
BASE COUNT          730 a          769 c          648 g          575 t
ORIGIN      
        1 gtcagaaccg ctatgaccgt aaagcccgga ttctttcgca acatgcgaag ggcgaagcga
       61 aaatcatgaa aaagttcctg catcattgct ccttagatca tttcagattg ttgattgcag
      121 aatccttgaa ggtagaagtc tgcgaatctg aaatctgaaa tttcctcact catcccgtag
      181 tgctaccaac ggatccacct tcgtcgcgcg cctggccggc aagtacccag caaccaacgc
      241 aacactcatc aacaccaatc cggcgatcac aagtgagaca ggatcagttg gcgagaggtc
      301 aaacaacaac gtctttgcga accgcgagac atacagaaca acgggcacac caacggccac
      361 accgatcaaa acgagtaaca ctgcctcgtg cagaattagc gaaagtacgt tgcgggtacc
      421 tgcaccgagc gccatacgaa tcccgatctc tttactccga cttgtcacac cgtaggaaag
      481 aagtccgtag agcccgatgc tggctaacac caacgccaac accccgaaag aaccggagag
      541 cttggccatc aatcgttcgc gcagcagcga ctcttcgacc atcgatctaa atacctggag
      601 attgacatca agacccgggt taaattccct cagcccctgg ttgatcgagg ccgagagatt
      661 tgttggtgga agatttgatc ggattaaaaa ctgacgacct gacgaagggt aagcgtcttg
      721 aaaactcgcg aggtaaacca cggggagggc gctttcgcga agatcttcaa attttgcatc
      781 gcgggccatg ccaacgattt cgtaagtcgt ctcgccctca ccaggtgtgg cctcaacaac
      841 aaaccgtttc ccaaccggat ttggttcgcg caacatttgc gcgagcgtct ggttgatgat
      901 cgcaacgtta gttgagcttc gtgagtcagt agtactgaaa gatctaccgc ttactaacgg
      961 gatatcaagt gtcttgaaat agtcgacacc aaccctattg aatgaggcat cgactttatc
     1021 cgcgctggtt ctcccttcaa gccaaacagc attacctcga cctcctccgg tcagagggat
     1081 ggagtccatc tcgctgacgt ctttcacacc tggcgtggct ttgattcttt caagcacttg
     1141 ccctcgaaaa gccaggcggt tagccggatc aatcttcagt cgattgaacc cgactcgcgc
     1201 gattaggaga ttttcttgat tgaatccggc atcaagtttc agcaacttgt tgaggctccg
     1261 actaaagaga agcgcacttg caaccaagac cagtgagagt gcaacctgga ttactacgag
     1321 ccctcgtctg agactaaagc gctcacgacc agccgtgagc cctcgtccgg ccgccttcat
     1381 cgctgctcca ggactgacac gcgttgctcg aagcgccggg gttagaccaa aaacaatgca
     1441 agtgagcact gccacaccgg cggtaaaacc aagaaccctc aagtcaagcg caacgtcgag
     1501 aaagacaacg tcgcgagttg tgccaattga cgcgacgaga aaggtaccta atgcctgggc
     1561 taaaaccagg ccaagcgagg taccaatggc ggcgagcaag atagtctcaa ctaataactg
     1621 cctaacgatt ctgaatcgtg acgcgccaac tgcttgtcga acggcgatct ctcgttcacg
     1681 cgtactcgcg cgtgccaaca acaaattcgc caggttggcg caggtaatca agagcaccaa
     1741 cccggcgatg gccagcaaca accaaagtgg acgctcatag ttatcgcgaa ggatcgaata
     1801 gcctgacgat ccatcgacga cttccagttt cgaattcaaa taatcgttaa cgcttgaagc
     1861 tggataattc gacggcagcg tctgttgaaa cagcggcgcg gagattgtcg acacttgaga
     1921 atttgcttgt gcgattgtcc aaccgggttt tagccgacca gtaaccatca accaccagtt
     1981 tgttcccgag tcgagtctct gattcgcgcc agagaacatc gcatcggcgc agattggaag
     2041 cgcaacatca aaagacttgc caacttcgag cccaaaaaat ccgggtggag tcacaccaat
     2101 cacttgaagc tgacgatctg aaagcgtgac gttgcgacca acaacatcac tactgcctcc
     2161 gaattcgctc tgccaaaatc cgtgactgat aactacgccg ggcgccgtac agccccgctg
     2221 atcgtctgac tggttgaaaa ctcggcccag ttctggctga acaccaagaa cgttaaagaa
     2281 gtctccacta acccaaagac ctcgagccgg tctgacctca ccaccctgtg caagattgaa
     2341 gcctgccatc ccccaagcag ccattccggc aaaaccgagc tgtcgatcgc gaatctgttc
     2401 ccagagtgga ttcgtcattg gcgcgtaacg caataagccc ttgcttcctc gcgttaattg
     2461 aagatcgctt gctcggagtc cgacctgcgc aagctcgtgc gcatttcgca cgggcagggt
     2521 tttaagacga accgcattga gcaactggaa gatcgcggta ttcgcaccaa tgccaagcgc
     2581 caaagacaac actgcaaccg cggtaaacgc cggattcttc aaaagcattc gaatgccgaa
     2641 acggaaatcg ttaagcattg ttcccattac tccttgtttg attcattgcc catttccaat
     2701 tcccgattgc cgatttgtct aa
//
LOCUS       DATCGC010001658         1098 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_325897, whole genome shotgun sequence.
ACCESSION   DATCGC010001658 DATCGC010000000
VERSION     DATCGC010001658.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1098
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325897"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1053
                     /locus_tag="VIJ87_15820"
     CDS             <1..1053
                     /locus_tag="VIJ87_15820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445900.1"
                     /translation="PGFSWMSAVIVRLNNNLGDVGDVLVGITLHDATSNRVRIGIGHV
                     GGGPPDDVPPPIPIPDLGPGASFHGRQLFPPDNAWNEDISNSPVDPNSDALIAGIGAN
                     TNLHPDFGTVWNGAPNGIPYIVVSGSQPLVPTNFNLYDDESDPGPYPVPPDAPIEGGA
                     ASTGDRHVLVIDRDNWQLYEMGNAFPVNNGASWNASGGAVFNLNSNALRPAGWTSADA
                     AGLPIFPGLVRYDEVFEQQEIKHAIRFTAQITRRAYVAPARHWASSNTSVTRPPMGMK
                     VRLKASFDISTYSPRIQVILRAFKKYGLILADNGSNWFISGAPDPRWSDNELDALKGI
                     KGSNFEVVKMNNIVTP"
BASE COUNT          265 a          306 c          288 g          239 t
ORIGIN      
        1 ccaggcttca gctggatgag tgccgtcatc gttcgactca acaataacct cggcgatgtt
       61 ggcgacgttc tggttggcat tacgcttcat gacgcaacga gcaatcgcgt ccgcattgga
      121 attggccacg ttggtggtgg cccacctgat gacgttcctc caccgatccc cattcccgat
      181 ctcggtccag gagccagctt ccacggtcga caacttttcc cgccagacaa tgcgtggaac
      241 gaagacatct ctaacagtcc ggtggatcca aactccgacg cgctaatcgc cggtattggt
      301 gcgaacacaa atcttcatcc agacttcggc acagtatgga acggtgctcc caacggcatt
      361 ccctacatcg tggtctcagg cagtcagccg ctggttccca ccaacttcaa tctttacgac
      421 gacgaaagcg atcccggtcc gtacccggtt ccgcctgatg ctccgatcga aggcggcgcg
      481 gcttcaaccg gtgatcgaca cgtgttggtg atcgaccgcg acaattggca gctctatgaa
      541 atgggaaatg cattccctgt gaataacggc gccagttgga atgcctccgg cggcgcagtc
      601 tttaacttga attcaaatgc gttgcggccc gctggctgga cctcagcaga tgcagccggc
      661 ctaccaatct ttccgggtct cgtgcgctac gatgaagtgt ttgagcaaca ggagatcaaa
      721 cacgcgatac gcttcactgc tcagataacg cgacgagctt acgtcgcacc agctcgtcac
      781 tgggccagta gtaatacaag tgtgacccgt ccacccatgg gtatgaaggt tcgcttgaaa
      841 gcatcgtttg atatctcgac ctattcacct cgcatacaag tgattcttcg tgcgttcaaa
      901 aagtatggat tgatcctggc agacaacgga tcaaattggt tcatcagtgg cgcaccagat
      961 ccacgatgga gcgacaacga actagacgca ctcaaaggaa tcaagggatc aaactttgaa
     1021 gtggtgaaga tgaacaacat cgtcacgcct tagtgggtcg aacaagctgg gaagggggca
     1081 agcggaaaat tgggacgt
//
LOCUS       DATCGC010001659         1316 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_325898, whole genome shotgun sequence.
ACCESSION   DATCGC010001659 DATCGC010000000
VERSION     DATCGC010001659.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1316)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1316)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1316
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325898"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..373)
                     /locus_tag="VIJ87_15825"
     CDS             complement(<1..373)
                     /locus_tag="VIJ87_15825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445901.1"
                     /translation="MSADQPTIPSPPSPGPPPPNFVNVLREMLRASDKVSDLIFSPGR
                     PPQVELSGKLVPVRINGLEKLTPAHTAGIAKLIIGNQSAAAESLEKNGSADLSFSAPG
                     EARFRVNIFKQRGSHAIVMRVI"
     gene            487..810
                     /locus_tag="VIJ87_15830"
     CDS             487..810
                     /locus_tag="VIJ87_15830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445902.1"
                     /translation="MFGKDADQVGPSPNLKEKGAGTMATYRDPVSCFAPLEVIERLLE
                     IRVEAGHSPAVYLLSPDDLADYLDAYGFDVYALSEAEAEFHFGDYRASLAPGGDHAHC
                     SLTAH"
     gene            complement(869..>1316)
                     /locus_tag="VIJ87_15835"
     CDS             complement(869..>1316)
                     /locus_tag="VIJ87_15835"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004722 - protein serine/threonine
                     phosphatase activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="PP2C family protein-serine/threonine
                     phosphatase"
                     /protein_id="HEY5445903.1"
                     /translation="KVNYLLWESIERNQFITAFYGILDASNRTLSYSNAGHNPPMLIG
                     ADGTTSFVDRGEQPLGMFRETRYHEYYHTFKPGEILVLYTDGVTEAMNSADEEFGRDR
                     LAAAVKDASELGARELVASMQRAVLEWTDGLGSSDDATFFVIKALK"
BASE COUNT          322 a          349 c          318 g          327 t
ORIGIN      
        1 gaattacgcg catcacaatc gcgtgcgaac cacgctgttt gaagatattc actcgaaagc
       61 gagcttcacc cggggcacta aaagataaat ctgccgaccc attcttttcg aggctctcag
      121 ctgcagcgga ctggttgccg ataatcaact ttgcaatacc ggcggtgtgt gctggagtaa
      181 gcttttcaag cccgttgatg cgtacaggga ctaactttcc tgacaattcg acctggggtg
      241 gtctgcccgg actaaagatc agatcgctaa ccttgtccga ggcgcgcaac atttcgcgca
      301 acacgttgac gaagtttggg ggtggtggtc ctggacttgg tgggctcgga attgttggtt
      361 ggtcagcact cattttaata gggaactttt tttagtgttt gcgcgtcaaa atttcggatg
      421 cacgcaaaca agcaaaagaa tcttcggcaa gaacaaactt gtaagcagtt gcgtacatca
      481 aatcaaatgt tcggcaagga cgcggaccaa gttgggccga gtccaaattt gaaagagaaa
      541 ggcgctggaa cgatggcaac atacagagac cctgttagct gctttgcacc acttgaagta
      601 atcgagcgcc tgctggaaat tcgtgttgaa gcgggtcact cgcctgccgt ctaccttctt
      661 tcccccgatg atttggcaga ctatctcgat gcatatggct tcgatgtgta tgctttgtcg
      721 gaggccgaag ctgagtttca ctttggcgat tatcgagcct cgctcgcccc aggtggcgat
      781 cacgctcatt gctcgttaac cgcacactaa gaatttcaac aacaaagact gttggctgcg
      841 cgagggattc cacgaatctt tcgcgttgtc attttagggc cttgatcaca aagaacgttg
      901 catcgtcgga cgaaccaagc ccgtccgtcc attccaacac cgctcgctgc atactcgcca
      961 caagctcacg cgctcctaac tctgaggcat ctttaacagc cgccgccagt cgatcgcgcc
     1021 caaactcttc gtcagctgaa ttcatcgctt ccgtcacacc atctgtatac agcaccaaga
     1081 tttcacccgg tttgaaagta tggtaatact cgtgatacct cgtctcacga aacatcccta
     1141 acggttgttc accacgatcc acaaagctgg tagttccatc tgcaccgatt aacatcggcg
     1201 gattatgtcc ggcattcgaa tacgacagag tgcggttcga cgcgtcgagg attccataga
     1261 acgccgtgat gaattgattc cgctcgattg actcccacaa caaatagtta accttg
//
LOCUS       DATCGC010001660         1284 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_191851, whole genome shotgun sequence.
ACCESSION   DATCGC010001660 DATCGC010000000
VERSION     DATCGC010001660.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1284)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1284)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1284
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191851"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..610)
                     /locus_tag="VIJ87_15840"
     CDS             complement(<1..610)
                     /locus_tag="VIJ87_15840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445904.1"
                     /translation="MREHDGETQFDESKSQDFMKALLEDLHALEYMIEAGRFETGVMR
                     IGAEQEMFLVDRNLRPAPISLEVLDYAKDSRLTTEIARFNLEANLTPLMLSGRCFSLM
                     EEELKELLALVSRSAATFDADVLLSGILPTLQKSDLTLDNLTPLPRYDALNRGVIGLR
                     GGPLSIHIKGLDELQITHDNVMMESCNTSFQVHFQTSPAEFAG"
     gene            complement(650..1027)
                     /locus_tag="VIJ87_15845"
     CDS             complement(650..1027)
                     /locus_tag="VIJ87_15845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445905.1"
                     /translation="MSQDDRPIVELLKDELALIEKGGYGRSVRTPWLAKSAFQDSLTC
                     INYSDPARTHPCSDCQLIDFVADEHRSEDVPCHFIALNEAGETIEDLEAAGNQAKLET
                     TLKQWMTTKIKQIEDEGVREPQL"
BASE COUNT          298 a          342 c          327 g          317 t
ORIGIN      
        1 cgccggcaaa ctcggccggg ctcgtttgaa aatgcacctg gaaacttgta ttgcacgatt
       61 ccatcatgac gttgtcgtga gtgatctgga gttcgtccag ccctttgatg tgaatcgaga
      121 gaggtcctcc tcggaggccg atcactccac ggttgagcgc gtcgtagcgg ggaagaggcg
      181 tcaaattatc caacgttaaa tctgactttt gcagcgtcgg caagatgccg gacagaagca
      241 catccgcgtc gaaagttgcg gcactcctac ttaccaacgc cagaagctcc ttcagctctt
      301 cctccatcaa actaaaacat cgcccactta gcatcagggg agtgagattg gcttcaagat
      361 tgaacctggc gatctcagtt gttagtcgcg agtcctttgc gtaatccagg acttccaaag
      421 aaatcggcgc cggtcgcagg ttgcgatcaa cgaggaacat ttcctgttcg gcgccgattc
      481 gcatcacgcc agtctcgaag cgacccgctt cgatcatgta ttcaagggcg tgcaggtctt
      541 ccagcagcgc cttcatgaag tcctgcgact tgctctcatc aaactgggtt tcgccgtcgt
      601 gttcgcgcat aggatttgac aatcatcaac ttgatgaatt tggttagcat tagagctgcg
      661 gctcccttac tccttcatcc tcaatctgct tgatctttgt cgtcatccat tgcttgagag
      721 tggtttccag ttttgcctga ttacccgcgg cctccagatc ctcgatcgtt tcgccggctt
      781 cgttcaaagc aatgaagtga caaggaacgt cctcggagcg atgctcgtcg gcgacgaagt
      841 cgatcaattg gcagtcactg catggatggg tccgagcagg atcggaatag ttaatgcagg
      901 tcagagagtc ctgaaaggca gactttgcta accacggcgt gcgaaccgac cgtccataac
      961 cgcccttttc gatgagagcc agttcatctt tcagcaattc cacaatcggt cgatcatctt
     1021 gggacataga gacttaacct ctcacgagaa tcgtcctcgc atctacaggg tgaactcggg
     1081 gcgggcgccg atggctagtt tcctactgat tcgaaactat ctttcggata gggtcagtct
     1141 agagcagtcg tgaaactcag tctgtgcgcc aacacacaga tcaggacgca agagccgaca
     1201 aaagcagctt ctcttttaac ttggaagtaa accgagatcg aagttgatcg gcaagctcgg
     1261 catgttgttg caaatctctt cgag
//
LOCUS       DATCGC010001661         1053 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_457684, whole genome shotgun sequence.
ACCESSION   DATCGC010001661 DATCGC010000000
VERSION     DATCGC010001661.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1053
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_457684"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..626
                     /locus_tag="VIJ87_15850"
     CDS             <1..626
                     /locus_tag="VIJ87_15850"
                     /inference="COORDINATES: protein motif:HMM:NF022142.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2490 domain-containing protein"
                     /protein_id="HEY5445906.1"
                     /translation="LSAIVASGQTPPSRSDTQNWNDVFISVPVAGPVDFILQGTLRNG
                     RDLTRPVDERVGIGFSFRIGKYLTVIPNYLHIDMQPFAGRRVSEERLSVNSTVKFSLG
                     KFVLQNRHVFERRLRSPGIDTTRYRNRLQVDHPIGPAKKKVSLFVSDEIFYDWSFNAW
                     VRNRFAVGASKVINKHFTLDLYYMRQNDSHSVPGDLHIIGSTWRFKL"
     gene            complement(722..>1053)
                     /locus_tag="VIJ87_15855"
     CDS             complement(722..>1053)
                     /locus_tag="VIJ87_15855"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEY5445907.1"
                     /translation="FLPQHTSLLKPESCALFRSNMTEGLEEARSLGWQLAATKESTAG
                     PDLPADSFGHNGFTGTSCWVDAQHDRVFILLTNRTHARQLPFANINQVRRQFHNLAGH
                     EVSTATR"
BASE COUNT          262 a          256 c          268 g          267 t
ORIGIN      
        1 ctctaagtgc catcgtcgcg tctggccaaa cgccaccctc aagatcagat acccaaaact
       61 ggaacgacgt cttcatttca gtgccggttg cggggccagt tgatttcata ttgcagggaa
      121 ctcttcgcaa cggacgtgac cttacccgac ccgttgatga acgcgttgga atagggttct
      181 ccttcaggat tggaaaatac ctgactgtta ttccaaatta cctgcacatc gacatgcagc
      241 cattcgctgg gaggcgcgtt agcgaagaac ggctttcggt gaattccaca gttaagtttt
      301 cattaggaaa atttgttctt caaaatcgac atgtttttga acggcggctc aggagtccag
      361 gaatcgatac aacgcgctac cgaaaccgtt tacaggtcga ccatccgatc ggtccggcaa
      421 aaaagaaagt ctcactgttt gtttcggatg aaatttttta cgactggtcg tttaatgcat
      481 gggtaaggaa tcgatttgca gttggggcga gcaaagtcat aaacaaacac ttcaccttgg
      541 atctgtatta catgcgacag aatgattcgc atagcgtgcc cggtgacttg cacatcattg
      601 gctcgacctg gcgcttcaag ctgtgattgt ccggttaatc tcggattgtg cttggcatgg
      661 ttgtgaggtc agtaccacaa cgcggtagcg tgtggctcaa tgaacggccc agagccacac
      721 gctaccgcgt tgcggtactg acctcatgac cagccaaatt gtgaaactgc cgacgtactt
      781 gattgatgtt tgcaaagggc agctggcgag cgtgagtccg attcgtgaga agaataaaga
      841 cgcgatcatg ttgcgcgtcg acccaacaac tagttccagt gaatccgttg tgaccaaaac
      901 tgtcagctgg caaatccggt cctgcggtcg actctttagt cgctgctaat tgccagccaa
      961 gcgaacgtgc ctcctctaaa ccttcggtca tgtttgatct aaacaatgcg cacgattcgg
     1021 gctttagtag agacgtgtgt tgaggcagaa act
//
LOCUS       DATCGC010001662         1015 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_223501, whole genome shotgun sequence.
ACCESSION   DATCGC010001662 DATCGC010000000
VERSION     DATCGC010001662.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1015)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1015)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1015
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_223501"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1015
                     /locus_tag="VIJ87_15860"
     CDS             <1..>1015
                     /locus_tag="VIJ87_15860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445908.1"
                     /translation="IFKPGTLTGSPSTFSNAKGQQVFHEDKLNLLPSFGFTYSPNWQE
                     GVMHKLLGDSGQTVIRGGFSMASVREGTNVFLGVTGANSGPAFTATRSIALAGAQNIP
                     VGSLFRNGLISAPSSIPSTLTYPFTPAITDSVNAFDPNIKLGYVESFTLGVQREVTKD
                     TVVEARYVGNRGHKLWRQYDMNEVNMIENGFLNEFKLAQQNLLANVAAGRGLNFRYFG
                     AGTNTSPLPIFLVNFQGATISPGVAIDPSNPAHYSSANFASSTFTNPLNPLNPNPATI
                     ASGQFAFSTATFLNNRNAVLNSTLPGITPALKALATPNFFVVNPGVVGDPFIVDNGNQ
                     TYY"
BASE COUNT          238 a          277 c          249 g          251 t
ORIGIN      
        1 acatctttaa gccgggtacg ctgactggat ctccaagcac ctttagtaat gccaaggggc
       61 agcaggtttt ccacgaagat aagctcaact tgcttccgag ctttggtttt acttacagcc
      121 cgaattggca agaaggcgtc atgcacaaac tgcttggcga ctcaggtcag acggttattc
      181 gcggtggttt ctcaatggca tcggttcgcg agggtactaa cgtattcctc ggcgttactg
      241 gagcgaattc aggaccagca ttcaccgcga ctcgatcgat cgcattagca ggagctcaga
      301 atattcctgt gggctcgctg tttcgcaatg gtttgatctc tgctccgagt agcattccgt
      361 ccactctcac atacccgttc acgccggcga tcaccgactc ggtaaacgct ttcgacccga
      421 acatcaaatt gggctacgtc gaatcgttta ctcttggtgt tcagcgtgaa gtaaccaaag
      481 acactgtcgt ggaagcccgc tatgttggca accgcggaca taagctttgg agacagtacg
      541 acatgaacga agtgaacatg atcgagaacg gattcctgaa cgagttcaaa ctcgcccagc
      601 agaatctgct cgcgaacgtt gccgcaggtc gaggtttgaa cttccgctac ttcggcgctg
      661 gcacgaatac ttcaccgttg ccgatcttcc tggttaactt ccagggtgcg acaatctctc
      721 caggcgtagc aatcgatccg agcaacccgg cgcactattc gagcgcgaac tttgccagct
      781 cgacgttcac caatccgttg aacccgttga atccgaatcc ggccacgatt gcttcaggcc
      841 agttcgcatt cagtactgcg acgttcctta acaacagaaa cgcagttctc aatagcacgc
      901 tgccgggtat tacacctgct ttgaaggcgt tggcgacacc gaactttttt gtcgtcaatc
      961 ctggtgtcgt tggcgatcca tttatcgtag ataatggaaa tcagacttac tacga
//
LOCUS       DATCGC010001663         1411 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_57727, whole genome shotgun sequence.
ACCESSION   DATCGC010001663 DATCGC010000000
VERSION     DATCGC010001663.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1411)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1411)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1411
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57727"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..297)
                     /locus_tag="VIJ87_15865"
     CDS             complement(<1..297)
                     /locus_tag="VIJ87_15865"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF012549.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HEY5445909.1"
                     /translation="MGSEPEKLEVSTDSSPGSEQTPSPLVTAFQREHPEWVVEVIEAL
                     GETTVVVPREHIRAICAFLKTWPETRFDFLADVCGADRGVEEEPRFEVNYHLFST"
     gene            complement(318..947)
                     /locus_tag="VIJ87_15870"
     CDS             complement(318..947)
                     /locus_tag="VIJ87_15870"
                     /inference="COORDINATES: protein motif:HMM:NF005012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B family
                     protein"
                     /protein_id="HEY5445910.1"
                     /translation="MGLENIIAEALPEVLTTRLDSLINWARKSSLWPATFGLACCAIE
                     MMNATSSRNDLARFGSEVFRASPRQADVMIVSGRVSRKMAPVLRRIYDQMPEPKWVIS
                     MGACATSGGVFDNYAIVQGVDKIVPVDVYIPGCPPRPEMLIHAVMMLQEKVMKESVRD
                     RRDILEVEAREAMVPGTLPITDGSTARQNTLPESRPYTIASRHERRRSS"
     gene            complement(960..>1411)
                     /locus_tag="VIJ87_15875"
     CDS             complement(960..>1411)
                     /locus_tag="VIJ87_15875"
                     /inference="COORDINATES: protein motif:HMM:NF012717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HEY5445911.1"
                     /translation="DYLPILLMFIVAAGFAVGNILLSQFVGQRKRTRTKLMPYECGKD
                     PVGSARERFSVKFFVIAMLFILFDIEVIFLVPWAVVYKRLAAEGNGTFVYAEMMVFIA
                     LLLAGYIYVVKKGAFDWGERARREAEAESRALADLEARQVQRKRPAA"
BASE COUNT          340 a          405 c          345 g          321 t
ORIGIN      
        1 cgttgagaac aggtgataat tcacttcaaa gcgtggctct tcctcaacgc ctcgatctgc
       61 tccacacacg tccgctagaa aatcgaaacg ggtttcgggc caagtcttca gaaatgcaca
      121 gattgcccgg atgtgctcgc gaggaaccac aacagttgtt tctccgagcg cttcgatgac
      181 ttctacgacc cattccggat gttcacgctg gaacgccgtc acgagcggtg acggcgtctg
      241 ctctgaacct gggcttgaat ctgtagagac ttctaacttt tccggctctg accccatgct
      301 ctgttcaact caactctcta cgaagaacga cgacgctcgt gtctcgaagc aatcgtgtac
      361 ggccgcgatt cgggtaatgt gttttgcctg gcagtcgacc cgtcagtaat gggtaaagtt
      421 cctgggacca tggcctcgcg tgcttcaacc tcgagaatgt cgcgacgatc gcgaacgctt
      481 tccttcatca ccttctcttg cagcatcatc actgcatgaa tcagcatttc tggtcgcggt
      541 gggcatcccg ggatataaac atctaccgga acgatcttgt cgacgccttg gacgatggca
      601 tagttgtcga agacaccgcc tgatgtcgca caagctccca tcgaaatgac ccatttcggt
      661 tcgggcattt gatcgtaaat gcgtctcaaa acgggcgcca tcttccttga aactcgtccg
      721 gacacaatca tcacgtcagc ctgtcgcggg ctcgcccgaa acacttcaga accaaaccgt
      781 gccagatcat ttcgcgaaga agtggcgttc atcatttcaa tggcgcagca agcaagacca
      841 aatgttgccg gccaaagtga agacttcctg gcccagttaa tcaacgagtc gagccgggtg
      901 gtcagaactt cgggtaaagc ctcggcaata atgttttcga gtcccatatg aaactacctc
      961 taagctgcgg gcctctttct ttgaacctgc ctggcctcaa gatctgccaa agcacgagat
     1021 tcggcctcag cttcccgccg tgccctctca ccccaatcga aggcaccctt cttaactacg
     1081 tagatgtacc cagccagcag caatgcaatg aagaccatca tttcggcgta cacaaatgtt
     1141 ccgttgcctt cggcggccag ccttttgtag acgacggccc agggcacaag gaaaatgact
     1201 tcaatgtcga acagaatgaa gagcatcgca atgacaaaga acttcaccga gaatcgttcg
     1261 cgcgcagagc ccaccgggtc tttgccgcac tcgtagggca tcagctttgt tctggtgcgt
     1321 tttcgttggc caacgaattg ggaaagtaag atgttgccga ccgcaaagcc cgcggcgaca
     1381 atgaacatca gaagaatcgg caggtaatca g
//
LOCUS       DATCGC010001664         1171 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_422020, whole genome shotgun sequence.
ACCESSION   DATCGC010001664 DATCGC010000000
VERSION     DATCGC010001664.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1171)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1171)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1171
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_422020"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1001)
                     /locus_tag="VIJ87_15880"
     CDS             complement(<1..1001)
                     /locus_tag="VIJ87_15880"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5445912.1"
                     /translation="MTLFMIIRVAFRALVRNKMRAALTMLGIIIGVSAVIAMVSIGQG
                     ASASVQAQIESIGTNLLFVSAGAQNVGGVRSGTGDSGTNTLTVEDLDAVKREVPSVSM
                     VTPAVNARSQLVAGNMNWNTSVQGVSEQYPDIRKWTVQSGTFFTDADVRTAGRVIVIG
                     QTLADNLYPGTDPVGQTIRVLNLPFRVVGVMARKGQDQQGRDQDDIAFAPYTTVQKKV
                     LGSPRVQIAYVSAVSQDATYTAQAQITDLLRQRHKLTASEGNDFTVRNMTDIADAANE
                     TSNTMTILLACIAGVSLLVGGIGIMNIMLVSVTERTREIGLRKAVGAKRSDILSQFL"
BASE COUNT          264 a          329 c          288 g          290 t
ORIGIN      
        1 atcagaaatt gcgaaaggat gtcgctgcgc ttggctccca ccgctttgcg gagcccgatc
       61 tcgcgggttc gctccgtaac ggacaccagc atgatgttca tgatcccgat accgccaacc
      121 aacagcgaga cccccgcgat acacgctaag aggatggtca tggtgttact tgtttcattc
      181 gcagcgtcgg caatgtcagt catgttgcga actgtgaaat cgtttccctc actcgcggtc
      241 aacttgtgac gctgccgtag caagtcagta atttgtgcct gggctgtgta cgtcgcatct
      301 tgagacacgg ctgacacgta agcgatctgt acgcgcggac ttccgaggac ttttttctga
      361 acggttgtgt agggtgcgaa agcaatgtcg tcctggtcgc ggccttgctg gtcctgacct
      421 tttctcgcca ttactccaac aacccggaaa ggaagattca acacgcggat tgtttgaccc
      481 acagggtccg ttcccggata aagattgtca gcgagtgttt gaccaatcac gatcactcgt
      541 ccggcggtac gtacgtcggc gtctgtgaaa aacgtcccgc tctggaccgt ccacttgcga
      601 atgtcaggat actgttcgct cacaccctga accgacgtat tccagttcat gttgccggcg
      661 actagttgcg agcgcgcatt aactgccgga gtcaccatcg aaacgcttgg aacttcgcgt
      721 ttgactgcgt cgagatcctc gaccgtcagc gtattggttc cactgtcgcc ggttccactc
      781 ctgacgccac caacattctg ggcgcccgca ctcacaaaca acagattcgt tcctatgctt
      841 tcaatctgcg cttgcacgga agctgacgca ccctggccaa tgctgaccat ggcgataaca
      901 gccgagacgc caatgatgat gccaagcatg gtgagcgcag cgcgcatctt gtttctcact
      961 agagctcgaa aggcgacgcg aatgatcatg aatagggtca tagttttcta atttctttgc
     1021 gaattgtccg ataaacttta gtttgtcgcg ctgaccacta aatgcttatt cgctgaaatc
     1081 acgacaaact aaagtttatc ggacaatcgc aaatccgaca ttagaaaacc atgaccctat
     1141 tcatgatcat tcgcgtcgcc tttcgagctc t
//
LOCUS       DATCGC010001665         1717 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_57761, whole genome shotgun sequence.
ACCESSION   DATCGC010001665 DATCGC010000000
VERSION     DATCGC010001665.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1717)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1717)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1717
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57761"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..401
                     /locus_tag="VIJ87_15885"
     CDS             <1..401
                     /locus_tag="VIJ87_15885"
                     /inference="COORDINATES: protein motif:HMM:NF020133.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445913.1"
                     /translation="GINNWEIFKRHIDGDPELFELFDGIRDSARNVREALLANDWGRV
                     AETMQRAYPNRRRLAATITTPQMDQLVEKALANGAEAAKVCGAGGGGCIAFLCTPGRR
                     ADVENALASEEGVEVLDWKVAKEGLVITES"
     gene            724..1089
                     /locus_tag="VIJ87_15890"
     CDS             724..1089
                     /locus_tag="VIJ87_15890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445914.1"
                     /translation="MMLRSSARPAVIASSLAVVLIVITSAFGSLGNTTMNTTCRQVAI
                     QLDTKEATQEQLVSMLREQLNVCGISATEAEIQKAARGSLNLIGKAKDPERGVIYVNT
                     KKFTICASWGKDKDFCKSH"
     gene            complement(1174..>1717)
                     /locus_tag="VIJ87_15895"
     CDS             complement(1174..>1717)
                     /locus_tag="VIJ87_15895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445915.1"
                     /translation="VFVMEETVAPDHGQAAKPAPAKAAPKAEAKTAPAPKPAAKPSTG
                     HTGANPNRQLFKRSTYIGFKDTGPVAGETFEQKCARLKALSAAAKQRADEGGEPEHES
                     ATVEVAETSETPAAVTAPAAGEAAPVHKATGNADRSLMKRGTYCGVEDTGPIAGETFE
                     QKVARLAKVSAAAKQRADGG"
BASE COUNT          408 a          436 c          463 g          410 t
ORIGIN      
        1 ctggaataaa caactgggaa atcttcaagc gtcacattga tggagatccg gaattgtttg
       61 agctattcga cggtattcgt gactccgccc gaaacgttcg cgaagcactg ttggcaaacg
      121 attggggccg cgtggcggaa acaatgcaaa gggcctatcc aaaccgacga cggcttgcgg
      181 caacaataac gacaccgcag atggatcaat tggtagagaa agcattagcg aatggtgccg
      241 aagccgcgaa ggtttgcggc gcaggcggcg gcggctgcat cgcgtttctc tgcacaccag
      301 gacgacgagc ggatgttgag aatgcgctag cgagcgaaga aggtgttgaa gtgttggatt
      361 ggaaagtcgc gaaagaagga ttggtgatta cggaaagcta agagtagtga ttttaaccta
      421 ctgttccggt aagctctggc gaatagcgca cgaccaggtt caaaaaattg cgccggctga
      481 tgtcctttct cactccgatt cgtcgcgtta atcaatgaga caatgcgaac gattcgtttt
      541 tgtcccatca acgtctgaag tcccccgcaa gtcaatctct caaaaaagcg caaagtcctg
      601 actgctcttc cattcacctg cgtttctttt ggttgcgcga cgcgtggttc gttgtattaa
      661 agaacgagag cgcacgagtt ggcgagctct actcaggatc gctcaaggca aggagttgaa
      721 ctgatgatgt taagaagttc tgcacggccc gccgtaatcg catcgtcttt agctgttgtg
      781 ttgatcgtga ttacatcagc ttttggatca ttgggcaata cgaccatgaa cacaacgtgt
      841 cgacaggtgg caattcagct ggacacaaaa gaggccacac aagaacagct cgtgagcatg
      901 ttgagagaac aactcaacgt ctgtggaatc tccgcgactg aggctgaaat tcaaaaagca
      961 gcgagaggtt ctttgaactt gatcggaaag gctaaagatc ctgaaagagg agtgatctac
     1021 gtcaacacta agaaattcac aatttgcgct tcgtggggaa aagacaaaga cttctgcaag
     1081 tctcactgag tggaattgat ttgcaaccgc tgggctttgc gtcgtagccg cttcgcgctt
     1141 ctaaacctga aaattattgc cgagaatctt tgattacccg ccgtcggcgc gttgcttggc
     1201 tgccgcggac acctttgcga ggcgtgctac tttttgctca aacgtttcgc ctgctatcgg
     1261 gccagtatcc tcaacgccgc aatacgttcc acgtttcatc aaactgcgat cggcatttcc
     1321 agttgccttg tgaactggcg cggcttcacc agcggctggc gccgttaccg ccgccggggt
     1381 ctcgcttgtc tcggcaactt caacagtcgc ggactcatgc tcaggctctc cgccttcatc
     1441 cgcacgttgt ttcgcggcgg ccgacaacgc cttcaaccgc gcgcacttct gttcaaaagt
     1501 ctcgcctgct accggaccag tatctttgaa cccgatataa gtcgaacgct tgaataactg
     1561 gcgattggga tttgcacctg tgtgtcccgt cgaaggcttg gcggcgggtt tcggtgctgg
     1621 agcagttttc gcttccgcct taggggcagc ctttgccgga gcaggtttcg ctgcctgacc
     1681 atgatcagga gcgacggttt cctccatcac aaacaca
//
LOCUS       DATCGC010001666         1098 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_91312, whole genome shotgun sequence.
ACCESSION   DATCGC010001666 DATCGC010000000
VERSION     DATCGC010001666.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1098
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91312"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1098)
                     /locus_tag="VIJ87_15900"
     CDS             complement(<1..>1098)
                     /locus_tag="VIJ87_15900"
                     /inference="COORDINATES: protein motif:HMM:NF019239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5445916.1"
                     /translation="ESRGDLDPFSTIFHEYTHLLVNDTFGKTPAWFNEGLAELYSTLS
                     VSDDQRVVIGRPIRRHISTLQQNSLLPLRTLLEVDYKSPFYNESQKQSIFYAEAWALM
                     HYLMMTDNGVRAPHVLEFLQLLNAHTALEPAFQKAFNTSIESFESALRGYVLQDHFRS
                     NDLTFARKIQPSIEMTSASLSEAEVFAYQGDLLIHSNRNEAETYLLKAVALDPNLIQA
                     HASLGMARYRQGRMSEALPSLERAVEANSQNALVQYYYASVLSRPAENETTLTIGLAP
                     ETAAKARAALKNAIALRPDFHDSYNLLAYVNLVMGTDIDETIELLNGVLARSPERNDH
                     RYMLGQLYMHKDDYKQARPLLERVAAGNLEAN"
BASE COUNT          248 a          267 c          293 g          290 t
ORIGIN      
        1 gtttgcctcg aggttgcctg cagcgactcg ttcgaggagt ggccgagctt gcttataatc
       61 gtccttgtgc atgtaaagct ggcccagcat gtaacgatga tcgttacgtt caggcgaacg
      121 cgccaggact ccattcaaca actcgatcgt ctcatcgatg tcagtcccca ttaccaggtt
      181 tacgtaggcc aaaagattgt acgagtcgtg aaagtccggt cgtaaagcga tcgcattctt
      241 taatgcggct cgagctttcg cggctgtttc tggagcaagc ccaattgtaa gcgtcgtttc
      301 attctcagct gggcggctca gtacggaagc gtagtagtat tgcaccagag cgttttgtga
      361 atttgcctcg acggctcgtt ccagactcgg tagagcttcc gacattcttc cctgacggta
      421 ccgcgccatt cccagtgatg catgagcttg aatcagattc ggatccagag ccacggcttt
      481 caggagataa gtttctgcct cgttgcgatt gctgtgaatc aaaagatcgc cctggtaagc
      541 gaagacttcc gcctcgctga gtgatgcaga ggtcatctcg atactcggtt gaatctttcg
      601 tgcgaacgtc aaatcgttag atctgaagtg gtcctgcagg acgtacccac gaagagcgct
      661 ctcaaaactc tcgatgcttg tattgaaagc tttctgaaat gctggttcca acgctgtgtg
      721 tgcattaagt agttgcagga actccagtac gtgaggagcg cgaacgccgt tatccgtcat
      781 catcaaatag tgcatcagcg cccacgcttc tgcgtagaag atgctttgct tctgactttc
      841 attgtagaag ggcgatttgt aatcaacctc gagcaacgtg cgcagtggca gcaaggagtt
      901 ttgttgaagg gttgagatat gacgccgaat aggtcttccg atgacgactc gctgatcgtc
      961 tgaaacactc agtgtgctgt acaactcagc cagtccttcg ttgaaccagg ccggggtttt
     1021 gccaaatgtg tcgtttacga gcaagtgtgt gtattcatga aagatggtgc tgaagggatc
     1081 caggtcacca cgcgattc
//
LOCUS       DATCGC010001667         1162 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_457750, whole genome shotgun sequence.
ACCESSION   DATCGC010001667 DATCGC010000000
VERSION     DATCGC010001667.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1162)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1162)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_457750"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(155..>1162)
                     /locus_tag="VIJ87_15905"
     CDS             complement(155..>1162)
                     /locus_tag="VIJ87_15905"
                     /inference="COORDINATES: protein motif:HMM:NF014606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015774 - polysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HEY5445917.1"
                     /translation="VSLKPDHWEAYRSLGHAYIDLNQGEEAVEALENALTLNPKDKEA
                     RRLLDQARLKVTVSGNEASKSQQPVGTQVAANVKSLTSPPSSTTLPENESALTKLYRV
                     GPGDVLDVILGTTAAADSAGTTVTTSGLLIHPSLIEPLPVAGLTVEEITTRFQTALGK
                     QASIVNVSVGIRDYVSHAILVSGLVKEPGTKILQREAIPLAVVVADAQPLPEAGTVTV
                     VRNKSNETFTVDLTQPAEMSMLIHTGDVITLLVTPTQFFYVAGEVKAPGEKTFRRGLT
                     LTQAIFIAGGPSGKPKEVRISRDNGKGFLNVIRYKLEEIESGKLQDPLIQPGDRILIV
                     N"
BASE COUNT          255 a          310 c          294 g          303 t
ORIGIN      
        1 gtctaagaaa actcccacgc gaattagact gccgttcttc aaccggatga actagttccc
       61 aaatctcggg aggagggcta agggtcctga caacggttgg cttgatttgt tctgtctctg
      121 gcgcgttatt actactcata gtgctacctt cttcttaatt gacgatcaag attctgtcgc
      181 cgggctgaat caacgggtcc tgtagtttgc ctgactcgat ctcctccagt ttgtagcgga
      241 ttacattcaa aaacccttta ccgttgtctc gcgagattcg aacctcttta ggttttcccg
      301 atgggccccc ggcgatgaaa atggcttgag tcagtgtcaa accgcgcctg aaggtctttt
      361 cccccggagc ctttacctca ccggcaacgt aaaaaaattg agttggagtc accagcaacg
      421 ttatgacatc gccggtgtga atcaacatgc tcatctcagc cggctgtgta aggtcgactg
      481 tgaaggtctc gtttgatttg tttcgtacaa ccgtaacggt accagcttcc ggcaatggtt
      541 gggcatcagc aacaacaact gctagaggaa tggcctctcg ttggaggatc tttgtacccg
      601 gctctttaac tagaccactc acgagaatcg catggcttac atagtcgcga attcccacgg
      661 acacattcac gattgacgct tgcttgccca gggcagtttg aaatcgggtc gtaatctcct
      721 caaccgtcaa gccagcaacc ggcaaaggct caatgagact cgggtggata agtaaccctg
      781 acgtagtgac agtagttcct gccgaatccg ccgccgccgt tgtgcccagg atcacatcca
      841 acacgtcgcc tggcccaacc cggtaaagtt tagtaagtgc cgattcattc tccgggagtg
      901 ttgtgctcga aggaggcgac gttaacgatt tcacgttggc tgcgacctgt gtgccaacag
      961 gttgttggga tttagacgct tcgttacctg agactgtaac cttgagccga gcttgatcga
     1021 gcagccgtcg tgcctctttg tctttggggt tcagagtgag cgcgttctcg agtgcctcga
     1081 ccgcttcctc tccctggttc agatcgatat aggcatgacc caagctgcga taggcttccc
     1141 agtggtcagg tttcaagcta ac
//
LOCUS       DATCGC010001668         1732 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_191900, whole genome shotgun sequence.
ACCESSION   DATCGC010001668 DATCGC010000000
VERSION     DATCGC010001668.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1732
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191900"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..759
                     /locus_tag="VIJ87_15910"
     CDS             <1..759
                     /locus_tag="VIJ87_15910"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEY5445918.1"
                     /translation="YQQFILESATSHISNVMQQHQRAAKAFPIEKGWLNRQQYDKTLK
                     EYETADLIYVLSEYSRQTFLKAGLPEAKVQRRVLTVEPRFAPPTRQFDSGRFTIVYVG
                     RLQVSKGLPVLLDAFKQIQDKDAQLILVGGYGSNGMESYLRRRIEADRRIKICPGDPL
                     PSLHRADVLVHPSFEDGLGLAPLEALACGVPVIVTEDTGMKEYVADGVNGYVLPTGNV
                     EALVDQLRAIRLRPLNGAFAPGFTADRVMAAKTQ"
     gene            858..>1732
                     /locus_tag="VIJ87_15915"
     CDS             858..>1732
                     /locus_tag="VIJ87_15915"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEY5445919.1"
                     /translation="MDDRLLSNEEQQRGMRLLFCLPSTQISGGLKVIFQLVNQLKANG
                     ESVDVFSFAGFPKWFPLKANLIEAKDFESIDMSAYDFVLVSNAFMVPMVLPLLQTARC
                     ILFCQDYESYHHARGQRYEDFISDSPTFTKIYELPVPIITISMAVQSLLKERVGRDAL
                     YLPMGLNKEVFAPQEQKPPTEFKRVLMVGNYLMPYKGMNDGFEALSKLSSEMPVQLVM
                     ATQESRGRRVFEGLNFPIELHYCPTEERMPAIISSCDAYCCTSWYEGLGLPAIEAFRC
                     GVPVVSTRTFGVSDYG"
BASE COUNT          431 a          411 c          435 g          455 t
ORIGIN      
        1 taccaacagt tcatcctgga atccgcgact tcacacataa gcaatgtgat gcagcaacat
       61 caacgagccg cgaaagcatt tccgattgaa aaaggctggc ttaacagaca acagtacgat
      121 aagactttga aggagtacga gaccgccgat cttatttatg tactttcaga atattcacga
      181 cagacttttc tgaaggcagg attgccggaa gcgaaagtgc aacgacgcgt tctaaccgta
      241 gagcccaggt ttgccccacc aacgcgacag tttgattcgg gccgcttcac catcgtatac
      301 gtcgggcgtt tacaggtctc taaaggacta cccgtcttgt tggatgcatt caaacaaata
      361 caagataagg acgcgcaact gatcctggta ggcggctatg gtagtaacgg gatggagagc
      421 tacttgcgcc gaagaattga ggctgaccgt cgtatcaaga tttgtccggg tgacccgttg
      481 ccttcgctgc atcgcgcaga tgtattggtc caccctagtt ttgaagatgg actcggtctt
      541 gcgcctctcg aggcccttgc ttgcggcgtg cccgttatag ttacagaaga taccggcatg
      601 aaagaatatg tggcggatgg cgttaatggc tacgtcctac ctacaggaaa cgttgaggct
      661 ctcgttgatc aattgagagc aattcgactt cggccactca acggagcctt tgcaccgggt
      721 ttcaccgccg atagagtaat ggctgcgaaa acgcaataat cccttccaca gatcagcgcg
      781 attacacaga tctcttcctt cgaacacgtt tgtgcagtgg cttttctcaa gaggagtctg
      841 tgtaatcggg gtaacctgtg gatgatcgtc ttttgtcgaa tgaggagcaa caacgaggaa
      901 tgcgtttact attctgcctg ccaagtaccc aaattagcgg cggccttaaa gtcattttcc
      961 aattagttaa tcagcttaaa gcgaacggtg agtcagtaga tgttttctca tttgctggtt
     1021 tccccaagtg gtttcctcta aaagcaaatc tgatcgaagc caaggacttc gagtccattg
     1081 acatgagtgc ctacgacttt gtgttggtgt cgaatgcttt tatggtgccg atggtccttc
     1141 cccttcttca aactgctcgc tgcattttgt tctgccagga ttacgaaagt tatcaccacg
     1201 cgcgcgggca aagatacgaa gacttcattt cagactctcc tacctttacc aaaatttacg
     1261 aacttcctgt tccgatcata acgatttcga tggcagtcca aagtttgctg aaagagcgag
     1321 ttggccgtga cgcgttatat cttccgatgg ggctcaacaa ggaagtcttt gctccacagg
     1381 aacaaaagcc gcctacggaa ttcaagcggg tcttgatggt aggcaattac ttgatgcctt
     1441 acaaaggaat gaacgatggc tttgaagctc tcagcaagct ttcaagtgag atgcccgttc
     1501 agttggtcat ggcaactcag gaatccaggg ggcgccgtgt ttttgaggga ctaaactttc
     1561 caattgagtt gcactattgc ccgacagaag aacggatgcc ggcaattatt tctagttgtg
     1621 atgcatattg ctgcacctcc tggtatgaag gcctgggact tccagcgatc gaggcgtttc
     1681 gctgcggagt tccggtagta tcaacgcgta ctttcggggt ttctgattac gg
//
LOCUS       DATCGC010001669         1048 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_27276, whole genome shotgun sequence.
ACCESSION   DATCGC010001669 DATCGC010000000
VERSION     DATCGC010001669.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1048)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1048)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1048
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27276"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..211
                     /locus_tag="VIJ87_15920"
     CDS             <1..211
                     /locus_tag="VIJ87_15920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445920.1"
                     /translation="FCSVMNEITTTQRSGERQLSSCYGNMAIAEKDNIPKSMKLNVLQ
                     LGRDFESLLLPCGHTHPQAPCPLFS"
     gene            701..>1048
                     /locus_tag="VIJ87_15925"
     CDS             701..>1048
                     /locus_tag="VIJ87_15925"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEY5445921.1"
                     /translation="MQKLDQYVGEVLDEKYQLEQLLGQGGMGAVYLATHLGTERYVAL
                     KLISPQFMRNEEFVERFKREARAAGRLRHPNVVDVTDFGFARVKEGRVAYLVMEYLDG
                     CTLGDVLAEEKQLP"
BASE COUNT          269 a          256 c          270 g          253 t
ORIGIN      
        1 gttttgctca gtgatgaatg agataacaac aactcagcga agcggggaga ggcagctgag
       61 tagttgttac ggaaacatgg caattgccga aaaagacaac attccgaaaa gtatgaagct
      121 caacgttctt caactgggaa gagactttga aagcttgctc ttgccatgtg gacacaccca
      181 tccgcaagca ccatgccctt tgttttcgtg aatacgaatt gctcctaaga caatgaataa
      241 cgcgagcgca cattactaag aagacgccga aaaaataatg atgatgtcta cggtttccga
      301 tagttgaatt acagcgtagt cacgcttcag caccgtcatg atctaattac ctgcatctga
      361 gaattcggat tcctccgagt ttctgaatca gatctctccg aactttttcg gagagcgcga
      421 catgcgcttt gggttgagaa gcattaatat aaggacacga taatttgtat ggctagtggg
      481 attatttgga ttcgttgact cggagcgcac gcgtcctcgc gcgtcatgcc gcgtcatgca
      541 gggacacata atcggacgat cactttcgcg gttcctgctt cctggtgagg acttgcgtga
      601 taccagcgtc cgatcccgtg ccgaggaaca ctgaaacccg ttacactcct cggctcgtat
      661 cacacgttca tagttgcatc ctcttaatag gggcgccctc atgcagaaac tagatcaata
      721 cgttggcgaa gttctcgacg agaaatatca actcgagcaa ctcctcgggc aaggcggaat
      781 gggtgcggtg tatcttgcca cgcacctcgg gaccgagcgc tacgtcgctc tgaaactgat
      841 ctcgccgcag ttcatgcgaa acgaggagtt cgtcgaacga ttcaaacgcg aagctcgtgc
      901 ggccggcagg ctacgacatc cgaacgttgt tgacgttact gactttggtt tcgctcgagt
      961 taaagaggga cgagttgcgt atctcgtcat ggagtatctc gacggctgca cgctcggtga
     1021 tgttttggcc gaagagaaac aactgcca
//
LOCUS       DATCGC010001670         3317 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_289771, whole genome shotgun sequence.
ACCESSION   DATCGC010001670 DATCGC010000000
VERSION     DATCGC010001670.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3317)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3317)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3317
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289771"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..737)
                     /locus_tag="VIJ87_15930"
     CDS             complement(<1..737)
                     /locus_tag="VIJ87_15930"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY5445922.1"
                     /translation="MKVLIGITTYNRADILAKSIQSALDQDYPDKEVAVFDDASTDET
                     PSLRASFPQVKWYRVDRNHGYLLGRNKLMSDTDADFYFSLDDDAWFLRGDEISVGVKL
                     LQSRPEVSALAYDVLTPDRPAAVDRKEPIPTHMFIGCGHLLRLTAVREVGFYTPSPGA
                     YGSEEKDLCVQLLDHKHELMFMPGVHVWHEKTMQARDLGAQHRSGVCNDLVFALRRCP
                     LPLALWLIPGKFLSHLKFAVQNGFVGP"
     gene            complement(743..1729)
                     /locus_tag="VIJ87_15935"
     CDS             complement(743..1729)
                     /locus_tag="VIJ87_15935"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY5445923.1"
                     /translation="MPSTITLPVSAVIATLDRPAVLRRTLQSLATSDSVPAELIVIDA
                     SSDTQTEEMLKKWVAESRIEFVYQKAITVGAAAQRNQGVPLARNPLIWFLDDDILLEP
                     DCLARLCRAINDDSSLGGVNAMIVNQRYMNPGLLSRSLFRILSEKAESTYAGKCLGPA
                     VNLLPEDSDDLPESVPVEWLNTTCTLYRKAALNSPPFDDHFTGYSLLEDLALSLTVGK
                     HWNLANVRKARIVHDSQPGEHKDGQSARAEMELVNRHYVMSRILNRTSFSDYMKLFLF
                     EVFGVVTPLASRSNWKSLPFVLMGKARGVRSMLGGNTRKNTASQASESLMVR"
     gene            complement(1739..2467)
                     /locus_tag="VIJ87_15940"
     CDS             complement(1739..2467)
                     /locus_tag="VIJ87_15940"
                     /inference="COORDINATES: protein motif:HMM:NF016908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HEY5445924.1"
                     /translation="MSLRTFVKSELSKRGLHVGRIPRSGVGGVSLLHDLRMLIQSSTP
                     ALFDVGANKGQTIEMLRTVFPESNIYAFEPSSETFQELTETSKRFGNHLKLFQCAVGE
                     KDDEAEFINYEWSTLSSFFELEARTENPFREVARGKREKVSVRSIDSVMAENELSSID
                     LLKIDTQGYEIPVLNGALTCLQNGIIKNVLAELTFAPLYQGQSNSLEVMRLLETHNFS
                     LVDFYEKTFDGNRLAWCTALFRKH"
     gene            complement(2473..>3317)
                     /locus_tag="VIJ87_15945"
     CDS             complement(2473..>3317)
                     /locus_tag="VIJ87_15945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445925.1"
                     /translation="DSRIVYEANEKSLGAAGNIDRAFAKEPRSEASYFAILEDDNFLF
                     PHFLHRGHQLVDSSGCQLIEMNQLIVYEDGQPRVDQETTRGHWFSQGKIAPLDLWASL
                     FLMEGVSNGGLFWSRQSVSDLMVGQNMNETCLQEACRTLKINEPIFFESEPCAAWSFL
                     PPAKVVRQSSGTALVSRGMNELRGSLWRQGRVMREAAINFALTTNNEARLGQAVESFL
                     KPWESGGVGPFDMNRRIRGLVRRFLTPDPVKEFLSKSTDLFRVPVGNDDEPVIELQAS
                     RSSS"
BASE COUNT          842 a          878 c          783 g          814 t
ORIGIN      
        1 cacggtccga caaatccgtt ttgaacggca aacttcagat gacttaaaaa ctttcctgga
       61 atcaaccata acgctaaagg cagtgggcaa cgtcgcaacg caaatacgag atcgttacaa
      121 acacccgatc gatgttgagc gccaagatca cgtgcctgca tcgtcttctc gtgccacaca
      181 tgtacgcccg gcatgaacat cagttcgtgc ttgtgatcaa gcaactggac acagaggtct
      241 ttctcctcgg atccatatgc accgggactt ggtgtataga agccaacctc acgcacggcc
      301 gtgagccgca acagatgtcc gcatccgatg aacatatgag tcggaatcgg ttctttacga
      361 tcgactgcag ccggtcgatc tggcgtcaaa acgtcatatg caagcgcaga aacttcagga
      421 cgtgattgca ggagctttac acccaccgaa atctcatctc cacgcagaaa ccaggcatcg
      481 tcatcgagac taaaatagaa gtccgcatcg gtatcgctca ttagcttgtt gcgacctaac
      541 aaatacccgt ggttcctatc aactcgatac catttgacct gcggaaagga agctcttaaa
      601 gatggagttt cgtctgttga cgcgtcgtcg aatactgcaa cttctttgtc gggataatcc
      661 tgatcgagtg ctgactggat cgacttcgcg aggatgtcag ctcgattgta ggttgtgatg
      721 ccgatgagga ccttcaatct gctcacctca ccattagact ctcactcgcc tggcttgccg
      781 tgttcttgcg agtgttgcca cccaacatcg agcgaacgcc ccgagctttg cccattagca
      841 cgaacggcaa gctcttccag tttgatcgtg aagctaacgg agtaaccacg ccaaaaacct
      901 cgaagagaaa taacttcatg tagtcgctga atgaagttcg attcaagatg cgcgacatca
      961 cataatgtcg gttgactaac tccatttcgg cgcgggccga ttgaccatct ttgtgctccc
     1021 cgggttggct gtcatggaca attctcgcct tccgaacgtt tgcaaggttc cagtgtttcc
     1081 caactgttaa tgacagcgcc agatcttcca gtaatgagta cccggtgaaa tgatcgtcga
     1141 aaggagggct gttgagagcg gccttgcgat agagcgtaca agttgtgttg agccattcaa
     1201 ccggaaccga ctcgggaaga tcgtcgctat cttcaggaag taaattcacg gccggaccca
     1261 gacacttacc ggcataagtg ctttcggcct tttcgctcaa aatcctgaac aaggagcgac
     1321 tgagcagacc tggattcatg taacgctgat tgacaatcat cgcgttaaca ccacccagcg
     1381 atgaatcatc gttgatagcg cgacacaacc tcgccaagca gtcgggctca agcagaatat
     1441 cgtcatccag aaaccaaatg agtggattcc gcgctaacgg aaccccttgg tttctttggg
     1501 cagcggcgcc gactgtaatc gctttttgat agacaaactc gattcgcgac tctgctaccc
     1561 actttttcaa catctcttca gtttgagtgt cgctcgacgc gtcgatgacg atcagttcag
     1621 cgggaactga atcagatgtc gccagactct gcagcgtccg ccttagcaca gcgggtcggt
     1681 ccaatgtggc aataaccgca gagactggaa gagtgattgt gcttggcatt gcttggactt
     1741 agtgtttgcg aaagagagct gtgcaccaag ccagtcgatt tccgtcaaag gtcttttcat
     1801 agaaatcgac aaggctaaaa ttgtgcgtct cgagcagtcg cataacttcc agtgaattgc
     1861 tttgtccctg atagagcggg gcaaaggtca attcggccag aacattcttg atgatcccgt
     1921 tctgcaggca cgttagggct ccgttaagaa ctggaatttc atagccctgg gtgtcaatct
     1981 tcagaaggtc aattgaggaa agctcatttt cagccatgac agaatcgatg ctacgtacgc
     2041 tgaccttttc tctttttcca cgagcaacct cgcgaaacgg gttctccgtt ctcgcttcta
     2101 gttcaaagaa cgacgagagg gtgctccatt cgtagttaat aaactcggct tcgtcgtcct
     2161 tctcaccaac cgcgcactgg aacaacttga gatggttacc gaaacgttta cttgtctcgg
     2221 tcaattcctg aaaggtctct gacgaaggct cgaacgcgta gatattggac tcgggaaaaa
     2281 ctgtccgaag catttcgatt gtctgtccct tgttcgcacc aacatcgaaa agtgccggtg
     2341 ttgaactttg aataagcatc cgcaagtcgt gtaataacga gacgccacca acacctgatc
     2401 gtggaatgcg gcccacgtga agacctcgct tgctcagttc actttttaca aatgttcgaa
     2461 gactcacagt tattaactcg acgaacgaga ggcctgtaac tcgatcaccg gctcgtcgtc
     2521 attgcccact ggtacacgaa atagatcagt ggacttagac aagaattctt tgaccggatc
     2581 aggtgtcaga aatctgcgaa cgaggcctct tatgcgacgg ttcatatcaa acgggcccac
     2641 gccgccgctc tcccaaggtt tcaagaaaga ttccacggct tgtcccaacc tggcttcatt
     2701 gttggtagtc agagcaaaat ttattgctgc ctcgcgcatc actctgcctt gacgccaaag
     2761 actcccgcgt agttcgttca ttcctcgaga aacaagtgcg gttccgctgc tctgtcgcac
     2821 aactttggcg ggcggcagaa aagaccacgc ggcacagggc tcactctcga aaaatattgg
     2881 ctcattaatt tttagagtgc gacacgcttc ctgtaagcac gtctcattca tattttgacc
     2941 aaccatcaga tcactcactg attgtcgaga ccagaacagt ccgccgtttg aaacaccttc
     3001 catcaaaaac agtgaagccc aaagatccag cggtgcaatc tttccctggc tgaaccagtg
     3061 accgcgagtg gtttcctgat cgacccttgg ctggccgtct tcgtaaacta tcaactgatt
     3121 catttcaatt aattgacagc ctgaagagtc aacgagttga tgcccacgat gcagaaagtg
     3181 aggaaacaga aaattgtcgt cttccaggat tgcaaagtag ctcgcttcac ttcgtggctc
     3241 tttcgcgaat gcccggtcga tgttgcccgc agcgccgaga gacttctcgt ttgcctcgta
     3301 aacaattcta gaatcat
//
LOCUS       DATCGC010001671         1441 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_57817, whole genome shotgun sequence.
ACCESSION   DATCGC010001671 DATCGC010000000
VERSION     DATCGC010001671.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1441)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1441)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1441
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57817"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..637)
                     /locus_tag="VIJ87_15950"
     CDS             complement(<1..637)
                     /locus_tag="VIJ87_15950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445926.1"
                     /translation="MSNAKSHLPERPSLEQLRKQAKELLQQLRSGDPSANDRLRKFKT
                     TFDNPILADAQFTLAREYGFESWPKLVHHLLASQTSDLQQHQRIAEDLVAVYNSSDPE
                     AAQRLNDLFHSALNIEKIHDFIRDKLFNLPDAEQRTNNFTLPDSQLVVARLYGFQNWS
                     ELVQSSSAAGQDLRSAPFVLSSRPPFYRIDWTNNSIEPRQPMSTKDWENVCD"
     gene            1098..>1441
                     /locus_tag="VIJ87_15955"
     CDS             1098..>1441
                     /locus_tag="VIJ87_15955"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HEY5445927.1"
                     /translation="MSAPLHPNSRLGRYEIRSRLGAGGMGEVYLAWDTRLDRKIALKI
                     LPSDLAANKDRLRRFEQEAKAASALNHPNIITIYEIEQIDSLNLIATELIEGQTLRES
                     MRSVPMRLGDIL"
BASE COUNT          338 a          347 c          394 g          362 t
ORIGIN      
        1 cgtcacaaac attctcccaa tcttttgtgg acattggttg gcgcggctca atgctgttgt
       61 tggtccaatc aatccgatag aacggaggtc gggaacttaa aacaaaggga gctgagcgta
      121 aatcctgccc agctgcgcta ctggattgca ccaactcact ccagttctga aagccgtaga
      181 gccgggcgac gactagttgg gaatcgggta aggtgaagtt gtttgtccgc tgttcagcgt
      241 ccggcaggtt gaacagtttg tcgcgaatga agtcgtgaat cttttcgatg ttaagcgcgc
      301 tgtggaagag atcgttgagg cgttgtgcgg cctccggatc agatgagtta taaacggcga
      361 caagatcttc agctatcctt tgatgctgtt gaaggtcaga agtttgagaa gctagcaggt
      421 gatgaacgag tttgggccag ctttcgaacc cgtactcgcg cgcaagggtg aactgtgcgt
      481 cggcaaggat tgggttatcg aaagttgttt tgaacttgcg cagtcgatca ttagcagacg
      541 gatcaccgct gcgaagttgt tgtagtaact ccttggcttg ttttcggagt tgctcgagtg
      601 acggacgctc gggaaggtga gacttcgcgt tagacatgtt gatctccttt cgttactacc
      661 cgtgtccgca cgcgggtcaa aagaagatcg aagttgtaga agacaaatgt caggtgggct
      721 cagccctttc cgcggacggg atgcggcctg ttacgcgata gaaatagtaa ctcagattaa
      781 atctcaccaa aagaggttga gtagcgtgcg tcgcgataac aatccagatt tcgtttactt
      841 tgttagttgt cattctcacc gtggcttcta accccggttg gtccaccctt cttttaaagt
      901 ctatcggcgc aggcatgtga gcaagagagc gttgcggggt gcgggcgtct cattatgtac
      961 aactagtgcc gcccgccaat ttctcctaga tctccacttg ggtcagcgct gcccaatgta
     1021 aaactggctc tccactatcg agttagctag aatgccgatc taaatccttt tatgtctgga
     1081 gactgcagcg tctcgttatg agtgcgcccc tacatccgaa tagccgcttg ggccgatacg
     1141 aaattcgctc acggcttggg gccggaggaa tgggcgaggt ttatctggca tgggacacca
     1201 ggcttgatcg caaaatagcc ctcaagattc taccctctga tcttgccgcc aataaggatc
     1261 gtctgcgtcg cttcgagcaa gaagcaaaag ccgcctcagc actcaaccat cccaacatca
     1321 tcaccatcta cgagatcgaa cagattgact cactgaactt gatcgcaacc gagttgattg
     1381 agggccagac acttcgcgaa agtatgcgat cagtgccgat gaggctcggc gacattctgg
     1441 a
//
LOCUS       DATCGC010001672         1559 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_358755, whole genome shotgun sequence.
ACCESSION   DATCGC010001672 DATCGC010000000
VERSION     DATCGC010001672.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1559
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_358755"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..529)
                     /locus_tag="VIJ87_15960"
     CDS             complement(<1..529)
                     /locus_tag="VIJ87_15960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445928.1"
                     /translation="MKRSNCTNIQTELDEMLLGEDCSAEVSQHLDDCNECRVFHEKQL
                     KLRQIVGSLGTVSAPADFDFRLRSRLARENSNSGFHLSNLVGFGQRTAVIATALALIV
                     AAVFVYRNFTNRNEAPQTVAHKEVPTNVQPIPAPDPRPSQVKALTVPVPQRSEQTATT
                     NPIIKRTKARGRFAIV"
     gene            complement(541..1182)
                     /locus_tag="VIJ87_15965"
     CDS             complement(541..1182)
                     /locus_tag="VIJ87_15965"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY5445929.1"
                     /translation="MNTLTTIDEVGFAHALQQETLEDTTSDHALLEATRTGDQDAFAE
                     LVGRYRNQITSYIYRMTNDYDGAVDLAQETFVRVYRAADRYQRSYAFSTYIYRIATNL
                     AISELRKRKRRKLVSLTGFFLSTDGSEPMEFNPPDDRPLQDKELVDTERRNAVQRAIG
                     TLPEKYRAPLILRDVDGRSYEEIAKILETSEGTVKSRISRARGFLREKMTAYL"
BASE COUNT          355 a          424 c          389 g          391 t
ORIGIN      
        1 caacaatcgc aaatctgccg cgtgccttag ttcgtttaat gatcgggttt gttgtcgcag
       61 tttgctcaga ccgttgcgga actggaaccg tcaacgcttt gacctgcgag ggcctgggat
      121 caggggccgg aattggctgc acgtttgttg gcacttcctt atgcgcaact gtttgaggtg
      181 cttcatttcg attcgtgaaa ttccgataca cgaataccgc ggctacgatg agcgccaacg
      241 cggttgcaat cacagcggtt cgctgaccaa agccaaccag gttgctcaga tgaaaaccag
      301 aattagagtt ctcgcgggcc agtctggatc tcagtcgaaa atcaaagtcg gccggagctg
      361 aaacagtacc gaggctacct acgatttgtc tcagctttag ctgcttctca tgaaagacgc
      421 ggcactcgtt gcagtcgtca aggtgctgcg aaacttccgc actgcagtct tcgcccaaca
      481 gcatttcgtc tagctcggtc tgaatattcg tacagtttga tcttttcata attctcacac
      541 tcaaagatac gcagtcatct tctcccgcag aaaacctctg gcccggctga ttcgcgactt
      601 tactgtgccc tcacttgttt cgagtatctt ggcaatctct tcatagcttc ggccatcaac
      661 gtcacgcaaa atcagaggag cacggtattt ctccggcaag gttccgatag cccgctgaac
      721 agcattacgc cgttccgtgt ccaccaattc cttgtcctga agcggtcgat catccggagg
      781 attgaattcc attggttctg aaccatccgt cgaaaggaaa aaacccgtta gcgaaaccaa
      841 ctttcgacgt ttgcgttttc gcagctcgct gatcgcaagg ttcgtcgcta tccgataaat
      901 gtaagtcgaa aaggcatagc tccgttggta cctgtcagca gctcggtaaa cgcgaacaaa
      961 ggtctcctgg gccaaatcca cagcaccgtc ataatcgttc gtcatccgat agatgtaact
     1021 cgtaatctgg ttccgatatc tgcctacaag ttccgcaaac gcatcctgat cgccagtgcg
     1081 agttgcttcc agcaaggcat ggtcagaggt ggtatcctcc aaagtctcct gctgtaacgc
     1141 gtgggcaaag cccacctcat cgatggtggt cagcgtgttc atttgggcag gcaggctcgc
     1201 tatctggctc acggaaccac tttctcgttt cgaaagtcaa ccaaacgtat cgacatggca
     1261 acagcgctgg aaagacgttc ggggctccac taagagcggc tcaccgggaa ttgattatac
     1321 ccacgccggc ttaccacccg cagttataca cgccaggttt gatgcaaggt tcccggaatt
     1381 gaaggtactg gttcattttt gagcagggcg tagtgtcctc gcgaacttcc tctcattctc
     1441 accgtggctt tagcccggtg gtctggcagc ggtaagaagg agaacggttc aaccgtgtac
     1501 ggttgctggc actagataaa ccgttgaaac ggtttccctg gtcgttggca gcgcgtctc
//
LOCUS       DATCGC010001673         1679 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_191942, whole genome shotgun sequence.
ACCESSION   DATCGC010001673 DATCGC010000000
VERSION     DATCGC010001673.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1679)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1679)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1679
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191942"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..231)
                     /locus_tag="VIJ87_15970"
     CDS             complement(<1..231)
                     /locus_tag="VIJ87_15970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445930.1"
                     /translation="MNSTSPQIERAIERAFKYLETEQQTDGAFPVRCLAHAGLPTAQS
                     GIVHVLPIVMLLDILQSVPDAQASRISQQLIPW"
     gene            complement(224..1603)
                     /locus_tag="VIJ87_15975"
     CDS             complement(224..1603)
                     /locus_tag="VIJ87_15975"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEY5445931.1"
                     /translation="MSGTLHSFGKLFANARQQDDNLSRRKLVLHALLLATFGFLLLSI
                     TILLTTFIITKNELFLTRILPISVAAAAVGISYILSRTGHYYAAACGLLGMYGLLATG
                     SAIRWSISLPMSILLFAVIIVLAGMLLGAKHSLYTMTLSILIILWIQTGTAHGTLHPD
                     TAWRQQASSFKDIIGYTLIFSMLGVTSWLFNKQTDLALHQALRAEAALERQKKLLETK
                     VEARTRELQAAQMEKMQQLYQFAQLGQFSTSLMHDLANHITTLSLDIEGMEKGSQTKL
                     LGRAKRQVEYIDNMVHWAYNHLNGKVEESKFDVAREVQEVIKILRHRAQLAHVQVSRV
                     TPQGKHSIMLYGDSNRFRQIMANLISNAIDAYDNATTDPREVIVTITKKDGMIMLTVE
                     DHGRGIPQERQAAIFQPFYSTKNTGMGIGLFIVRQIVEDHFRGEVKLHSKPKETIFTV
                     TLPASGSHE"
BASE COUNT          411 a          370 c          432 g          466 t
ORIGIN      
        1 ccatggtata agttgctggc tgatgcgcga ggcctgcgcg tcaggcacag actgaaggat
       61 atccaataac ataacgatcg gcaaaacatg gacgatgccc gactgagcgg taggcaatcc
      121 cgcatgggcg aggcaacgca ctggaaatgc gccgtctgtt tgttgttcag tctctagata
      181 cttgaaagca cgttcgattg cgcgctcaat ttgaggggac gtgctattca tgactccccg
      241 acgccggcaa tgttacggtg aatattgttt ctttcggttt actgtgtagt ttaacttcgc
      301 cacggaaatg atcttctacg atctgtcgaa cgatgaagag cccaatgccc ataccagtgt
      361 ttttagtgct ataaaatggc tggaagattg ctgcttgtct ttcttgaggg atgcctcgtc
      421 cgtgatcttc aacagtgagc ataatcatgc catctttttt agtgatggtg acgataactt
      481 cgcgaggatc cgtagtggcg ttgtcgtagg catcgatggc attcgaaata aggttcgcca
      541 taatctgacg aaagcgattt gaatcgccat acaacataat gctatgtttg ccttggggag
      601 tgacacgaga gacctgtaca tgcgccagct gtgcacgatg acgaagaatt ttgataacct
      661 cttgcacctc gcgtgcaaca tcaaacttgg attcttctac tttgccgttc aggtggttgt
      721 atgcccaatg aaccatgttg tcgatatatt caacttgccg ttttgcccgt ccgagcaact
      781 ttgtttgact gcctttctcc atgccttcaa tgtcgaggct cagcgtggtg atgtgattcg
      841 caagatcgtg cataagactt gtactaaact gaccaagctg ggcgaattgg tacaattgct
      901 gcatcttttc catttgcgca gcctgaagtt cacgggtacg tgcttcaact ttagtttcga
      961 gtagtttctt ttgtcgttcc aacgctgctt cggcgcgcaa tgcttggtgc agtgccaggt
     1021 cggtctgctt attaaataac cacgatgtta ctccgagcat tgagaatatc aaggtgtatc
     1081 ctatgatatc tttaaaactc gaggcttgct gtcgccatgc cgtgtcgggg tgtagcgtac
     1141 cgtgggcagt gccggtctgt atccacagga ttatcaggat gcttaaggtc attgtgtaca
     1201 aagaatgttt cgcgccgagc aacatacctg ccagtacaat aatgacagcg aaaagcagaa
     1261 tgctcatagg caagctgata ctccatctga tggctgagcc agttgctagt aaaccgtaca
     1321 tgccgagcaa tccgcaagct gccgcgtaat agtgaccagt tcgtgaaagt atgtacgaga
     1381 taccgacagc cgctgcagcc acgctgatag gaaggattcg tgtcaggaaa agctcatttt
     1441 tggtgatgat aaaagtggtg agcaaaatcg ttatgctgag taataaaaat ccgaacgttg
     1501 cgagcaaaag cgcgtggaga acgagcttac gacgactgag attgtcgtct tgttggcgcg
     1561 cgttagcaaa tagtttgccg aatgaatgga gagtgccgga catgagttac gtttgtagta
     1621 ggtgactcag tgagagtcac ccttgtacat tcctagtctt gtaagttact tttgttctt
//
LOCUS       DATCGC010001674         1990 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_289802, whole genome shotgun sequence.
ACCESSION   DATCGC010001674 DATCGC010000000
VERSION     DATCGC010001674.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1990)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1990)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1990
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289802"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1714)
                     /locus_tag="VIJ87_15980"
     CDS             complement(<1..1714)
                     /locus_tag="VIJ87_15980"
                     /inference="COORDINATES: protein motif:HMM:TIGR00148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiD family decarboxylase"
                     /protein_id="HEY5445932.1"
                     /translation="MHPSLRTFLDLLTRENQLQEIKTEVDPNLELAEIHRRVIDEGGP
                     ALLFSRVKGSPYPVVTNLFGTVQRIDMAFGPKPESLVRDLVKIAESILPPKPAELWQH
                     RGVGLDLLRLGTKNTTRSPVTQVVDRPARLDQLPVLTTWQEDGGPFITLPLVYTENPV
                     TKKHNLGVYRMQVFDASSTGLHWQIQKGGGFHYREAERLNQNLPVTVFLGGPPALILA
                     AIAPLPEDVPELVLASLLAGQKLKMSRSPLGGHRLAAEAEFALVGHAAPHERRDEGPF
                     GDHYGYYSLRHEYPVFHVDAVFHRRDAIYPATVVGKPRQEDFFIGDYLQRLLSPLFPL
                     VMPSVKDLWTYGETGFHSLCAAVVQERYGREALVSGFRILGEGQLSLTKFLLLTDAPQ
                     DLSNFSKLLEHVLERFRPETDLFVFSNVSMDTLDYTSGKVNEGSKAIMLGLGEPIRKL
                     EREFHGTLPNGVSRAEVFCGGCLVLQGPMFSEEESLGTRVASHPAFKNWPLIVLHDDA
                     SVARSSPDFLWATWTRFEPAADIYASNTSVHRHHLVYEAPIVIDARTKPGFPDELVVR
                     EDISK"
BASE COUNT          509 a          527 c          517 g          437 t
ORIGIN      
        1 gcttcgatat atcttcacga acgactagct cgtcggggaa accaggtttc gtgcgagcat
       61 caatgactat cggagcctcg tagacgagat gatgacgatg aaccgaagtg ttggaagcgt
      121 aaatatcagc agccggttcg aaccgcgtcc aggtggccca taaaaagtcg ggagacgaac
      181 gagcgactga agcatcgtca tgcaaaacga ttaatggcca gttcttaaat gccggatgac
      241 tcgccacgcg tgttcccaga gattcttcct cggaaaacat cggaccttgt aaaacgagac
      301 agcctccaca aaagacctcc gcgcgcgata cgccgttcgg caaagtcccg tggaactcac
      361 gctccaactt ccgaattggt tcccctaaac caagcatgat ggctttacta ccctcgttaa
      421 ccttgccact tgtgtaatca agcgtgtcca ttgagacatt tgaaaataca aacaaatctg
      481 tctccggacg aaagcgctca agcacgtgct cgagtaattt ggaaaagttg ctcagatcct
      541 gaggcgcgtc agtaagcagc agaaactttg tcagtgaaag ctgaccttca cccaggattc
      601 gaaaacccga gacgagcgct tcacgaccgt aacgttcctg cactacagcc gcgcacaagg
      661 aatgaaaacc cgtttcacca tacgtccaca aatctttcac cgacggcatc acaagcggaa
      721 acagcggcga cagcaagcgc tgcaggtaat cgccgataaa gaaatcttcc tgccgaggtt
      781 ttccaacaac agtcgctgga taaatcgcat ctcgccgatg aaagacggcg tccacgtgga
      841 agactggata ttcgtgacgc agcgagtaat aaccgtaatg gtctccaaat ggcccctcgt
      901 cgcgtcgctc gtggggggca gcgtgaccca ccaacgcaaa ctcagcctca gcggctaaac
      961 ggtgaccgcc gagcgggctg cgactcatct tcagtttctg acctgccaat aacgacgcca
     1021 acaccagctc tggaacgtcc tctggcaacg gcgcgatcgc ggcaagaatc agtgcgggtg
     1081 gtccaccgag gaaaacagtt accggcagat tttgatttag acgttcagct tcccggtaat
     1141 ggaacccacc tcctttttga atctgccaat gtaaacccgt ggagctggcg tcgaatacct
     1201 gcatccgata gacgcccagg ttgtgtttct tcgtcaccgg attctcggtg taaacaagtg
     1261 gcaacgtaat gaatggcccg ccatcctcct gccatgtcgt gagaaccggt agctgatcga
     1321 gacgcgcagg tcgatctacc acttgcgtga ctggggatct tgtcgtgttc ttagttccga
     1381 ggcgcaaaag atctaaaccg acgccgcgat gctgccaaag ttcagcgggc ttgggcggta
     1441 agatcgactc agcaatctta accagatcgc gaactaacga ttcaggtttc ggaccaaaag
     1501 ccatgtcgat cctttggacg gtaccaaaaa gattcgttac gaccggataa ggacttcctt
     1561 ttacgcgact gaataacaat gccggtccac cttcatcaat gacccggcgg tgaatctcag
     1621 cgagttcgag attcggatcg acttctgttt tgatttcctg gagttggttt tctctggtga
     1681 ggagatcgag aaatgttcgc agacttggat gcacggatgg tgagtatatc aggcgcagga
     1741 ggataagaga ttatttgtca ttggtcattt cccatttctc attttccatt tcgtagggag
     1801 ttggacgcct cagtgggtcg aacaagggag taggacgcca cagtgggtcg aacaagctgg
     1861 gaagggtggc aagcggagac tggacgtctt acttcattgg ccctaagcgc gcccccgctg
     1921 aggttcaact tcatcattta agatgttcat atggcgactc agcgggggcg cgctaggaat
     1981 cactcgcgca
//
LOCUS       DATCGC010001675         2179 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_155931, whole genome shotgun sequence.
ACCESSION   DATCGC010001675 DATCGC010000000
VERSION     DATCGC010001675.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2179)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2179)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2179
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155931"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2179
                     /locus_tag="VIJ87_15985"
     CDS             <1..>2179
                     /locus_tag="VIJ87_15985"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY5445933.1"
                     /translation="LQALAGPSDPEGGGAQVKVDGFSNGQIPPKDAIREVRINNNPFS
                     AENEYPGFNGIEIFTQPGSDKWHGGANFEFNDESLNSRNPFTTRRAPYQQRSFGFNLS
                     GPLVKKRVSFSTYFNRFVSDSNSIVNATVLDPATLTPFAINQSFVTPQQSTYGNARLD
                     LKINKKHTIVSRFSFSQSKQDLQGVGGFSLPSRAYKGDRTDYTLQITETALLNEKTVN
                     ETRFQFSRSNLDQASVSDLFALNVQDSFFGGGSQVGSALNLQKRLEIQNFTSWTHGKH
                     FVKVGGRFRWVGLDNTSPGNFGGTYTFAGGLGPKLDANNQIIPDANGQPQLIQLGSLE
                     RYRRTLLFQQQGLGPSAIRLLGGGATQFSIAGGEPTTDVTQADAAVYFQDEWRVTPHF
                     TLSPGFRYENQNNIDSNMNFAPRLGFAWSPVFGGAKAAPKPAVEAKPTVAATTPSSTT
                     APTTAAAPTTAAPKAPAGPPKTVFRGGIGIFYNRISEDITLQAERFNGETQQQFLVTD
                     PTVLNLFPIVPPVGALEAFAQPQTRRVVSDEIDPIRILRGMLTVERQLTKTIKLSATY
                     YHTHTVRSQRSVNINAPLGGTFIPGLPNSGVRPLGQSAGNIMQYQSTGRAIGNSLNIN
                     FNGNLKKINFWGGYSISKSRNTDSGSSGSPFDAYDFSHEFARSSFSALSFFYGGGYYE
                     APHGISLNLFMIANSGSPFNITTGRDTNGDTAFSERPAFATDLT"
BASE COUNT          550 a          611 c          517 g          501 t
ORIGIN      
        1 cgttacaagc gctggctggc cccagcgatc ccgaaggcgg cggtgcacag gtgaaggtcg
       61 atggcttctc aaatggacag atacctccta aagacgccat ccgcgaagta cgaatcaaca
      121 acaatccctt ctccgctgaa aacgaatatc cgggttttaa cggcatcgag atcttcactc
      181 aacctggctc cgataaatgg catggtggcg caaacttcga attcaacgac gagagcttga
      241 actcgcgcaa tcccttcact actcggcgcg ctccctatca gcagcgatcg ttcggcttca
      301 acttgagcgg accactagtg aagaaacgcg tctccttctc gacttacttc aatcgcttcg
      361 tgagcgatag caactcaatt gtgaatgcga cggttctcga tccagctact cttactccgt
      421 ttgccatcaa tcaatcattt gtcacaccgc aacaaagcac ttacggtaat gcccgtctcg
      481 acctaaaaat caataaaaag cacaccatcg tttcgcgctt ctcgttttca cagtcgaaac
      541 aggacttgca gggtgtgggc ggattctcct tgcctagtcg tgcatacaaa ggtgatcgca
      601 ctgattacac cttgcagata accgagaccg cactgctgaa cgaaaagacg gttaacgaga
      661 cccggtttca gttttcccgc agtaacttag atcaggctag cgtgtcagac ttgtttgctt
      721 tgaatgtgca ggactcgttt ttcggtggtg gctctcaggt cggttccgcg ttgaaccttc
      781 agaaacgcct ggagattcaa aacttcactt cgtggaccca tggcaaacac tttgtcaaag
      841 ttggtggacg atttcgttgg gtcggactcg acaacacatc cccgggaaac ttcggcggta
      901 cttacacatt tgccggcggg cttggtccaa agctggacgc aaacaaccaa attatcccag
      961 acgcgaacgg tcagcctcaa ttaattcagc ttggtagttt ggaacgctat cgtcggacgc
     1021 ttctatttca gcagcagggt ctgggcccgt cggccattcg cttgttaggg ggcggcgcaa
     1081 cgcagttttc aatcgcaggc ggcgagccaa caacggatgt tacccaggct gacgccgcag
     1141 tttactttca ggacgaatgg cgcgtgacac cacacttcac gctttcgcct ggcttcaggt
     1201 atgagaatca gaacaacatc gatagcaaca tgaatttcgc tccgcgactg ggtttcgcct
     1261 ggtcgccagt tttcggagga gcgaaagctg cgccaaaacc ggcagttgaa gccaaaccaa
     1321 ctgtcgctgc gacaactcct tccagtacca ctgcaccgac gactgctgcg gccccgacga
     1381 ctgccgctcc taaggcaccg gccggtccgc ctaaaacagt tttcagaggt ggcatcggca
     1441 tcttctacaa cagaatctca gaagacatca cgctacaagc tgagcgattc aatggagaaa
     1501 cacaacagca gttcctcgtc actgatccaa cggttctcaa cttgttcccg attgtccctc
     1561 cggtcggtgc gctcgaggct tttgcccaac ctcaaactcg ccgcgttgta tctgatgaaa
     1621 tcgatccgat acgcattttg cgtggaatgc taactgtcga gaggcagttg actaagacaa
     1681 tcaaactttc ggctacctac taccatacgc acactgttcg cagtcaacga tcagtaaata
     1741 tcaatgctcc tcttggaggc actttcatac cggggctacc aaatagtggt gttcggccac
     1801 ttggacaaag cgccggcaat atcatgcaat atcaatccac cggacgagcg attgggaata
     1861 gcctgaacat caacttcaac ggcaacctta agaagattaa cttctgggga ggctacagca
     1921 tcagcaaatc gcgaaacaca gattccggta gcagcggttc gccatttgac gcatacgact
     1981 tcagtcacga gtttgcgaga tcaagcttca gtgcgctgag ctttttctat ggaggcggct
     2041 attacgaagc accacacgga atcagtttga acctcttcat gatcgcgaac tcaggttcac
     2101 ctttcaacat caccaccgga cgcgatacaa acggtgatac ggcgttttca gaacgaccgg
     2161 cattcgcaac cgatttaac
//
LOCUS       DATCGC010001676         1433 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_457813, whole genome shotgun sequence.
ACCESSION   DATCGC010001676 DATCGC010000000
VERSION     DATCGC010001676.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1433)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1433)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1433
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_457813"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            66..>1433
                     /locus_tag="VIJ87_15990"
     CDS             66..>1433
                     /locus_tag="VIJ87_15990"
                     /inference="COORDINATES: protein motif:HMM:NF025314.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4214 domain-containing protein"
                     /protein_id="HEY5445934.1"
                     /translation="MRDPSTGGFIDSQSRTLVTVGDNRLFNANGLALLPNNDLLIADF
                     ESDELRIIRDTNGDRIPDTLDNTPYYSYRFSDDSPLDVAVNSQGIVFSLSEGTDTLLL
                     VIYDDNHDGRADRDEVAVEGLSIDNNLFLHGLTTDRNGTVYLIEDATSAFDGPGGNLD
                     TARIDAFRDPHMDGFLENGKLFTTADSSNFGLSGLSFGPSNNQLQDTTAFVKQHYRDF
                     LNREPDPSGLAFWVNNIDGCGSNTPCREVKRIDTSAAFFLSIEFQQTGFLVYRLYKTS
                     FPASPARPRGLPRFAELIPDAQTIGNGVVVGEPNWQGKLEANTVAFINTFVSRLEFQA
                     TYPAQLTAAQYVDNLNTLANGALSTNERNALVNGLNGGQETRATVLRKVAEDVDFSNA
                     EFNRAFVLMQYFGYLRRNPDAAPDTDFSGYDFWLAKLNQFGGDFRAAEMVKAFITSGE
                     YQARFE"
BASE COUNT          345 a          379 c          355 g          354 t
ORIGIN      
        1 ggtttttcga ttcttcaaat ccaggtaatc caagcaacga gccttctcca ggcgtagtgc
       61 tgcttgtgcg tgatccaagt accggcggct tcatcgattc acaatcacga acgctcgtaa
      121 cggttggcga taaccgtttg ttcaatgcga atggtctcgc actcctgcca aataacgatc
      181 tgcttatcgc tgactttgag tcggatgaat tgcgaataat tcgcgacaca aatggcgatc
      241 gcatccctga cacgctcgac aacacgcctt attactcata ccggttctcc gacgattccc
      301 cgcttgatgt cgcggtgaat tcgcaaggca tcgttttttc tctttcagaa ggaaccgaca
      361 cgttattgct agtaatctac gatgataatc acgatggacg cgccgaccgt gacgaagttg
      421 cagtcgaggg gctttcgatc gacaacaatc tcttcctaca cggattgact accgatcgta
      481 acggcaccgt gtacctcatc gaagacgcaa cctcagcgtt cgatggaccg ggtggcaatc
      541 tcgacactgc aagaatagat gcgtttcgtg atccacacat ggacggtttc ctggaaaatg
      601 ggaaactgtt tactaccgct gactcaagca acttcggatt gagtggcctc tcctttgggc
      661 cgtcgaacaa tcaacttcaa gacactacgg ctttcgtgaa gcaacactat cgcgacttcc
      721 tcaatcgcga gcctgatcca tccggccttg cgttttgggt aaacaacatc gatgggtgtg
      781 gtagcaatac cccgtgtcgc gaagtcaaac gaattgatac ctccgcggcg ttcttcctct
      841 ccatcgagtt tcagcagacg ggatttcttg tctaccgttt atataagact tcgtttcccg
      901 cttcacccgc tcgtccacga ggactaccac gctttgcgga actgattccc gatgcgcaaa
      961 cgatcggaaa tggcgttgtt gtgggcgaac cgaactggca gggcaaactc gaagcaaaca
     1021 cagtggcgtt tatcaatacc tttgtttcgc gtttagagtt tcaggcgacg tatccggcac
     1081 aactcacagc cgcgcagtat gttgacaact tgaacacgct tgccaatggg gcactatcaa
     1141 cgaacgaacg gaacgcgctg gttaacggac tgaacggtgg gcaggagacg agagcaacag
     1201 tactgcgcaa ggttgccgag gacgtcgatt ttagcaacgc cgaattcaac cgtgcattcg
     1261 tgttgatgca gtacttcggc tatctacgac gaaaccccga cgctgcgcct gatacggatt
     1321 tctctggcta cgatttttgg ttggcgaaac taaaccagtt tggcggcgat tttcgtgcag
     1381 cggaaatggt gaaagcattt atcacttctg gcgagtacca agccaggttt gag
//
LOCUS       DATCGC010001677         3457 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_389041, whole genome shotgun sequence.
ACCESSION   DATCGC010001677 DATCGC010000000
VERSION     DATCGC010001677.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3457)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3457)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3457
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_389041"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            234..761
                     /locus_tag="VIJ87_15995"
     CDS             234..761
                     /locus_tag="VIJ87_15995"
                     /inference="COORDINATES: protein motif:HMM:NF028509.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HEY5445935.1"
                     /translation="MRSVAIIVLSLVCLVAGCSHLKSLHEARGSNSNAAVAASPEALP
                     SGRGTREEAKAMLDKAVEHYGQVGRTQALADFNKMKSPFGDRDLYVFCLGSDHKITAN
                     GGFSQYVGMSVDVLKDASGKSLGKQIIEMAAQSSEGSIEYMWTNPVSHLTEHKIAFFK
                     KVGEDVCGVGAYSAE"
     gene            complement(841..1899)
                     /locus_tag="VIJ87_16000"
     CDS             complement(841..1899)
                     /locus_tag="VIJ87_16000"
                     /inference="COORDINATES: protein motif:HMM:NF014027.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008612 - peptidyl-lysine modification to
                     peptidyl-hypusine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyhypusine synthase family protein"
                     /protein_id="HEY5445936.1"
                     /translation="MVTQRKPKASKYLTTPTRPVQVDRDRSVAGLLEKMEGTGFGGRQ
                     LAEAHRIWLDMLGDNTTIMVAGSGALIPAGMRRLLAYVIKNRFVDVLVLSGSMLFHDL
                     HETLGRYHFQAHPTMTDAELESAQISRMWDLLASDEEYREAKEWIGGFTNQLDQTRSY
                     SPREFLHLLGRELAEIASEDGVLTSAYKARVPIFCPAIADSGLAVGIAGGRFEKKNNF
                     MFDVIQDVLDMMNVMAHARISGIINLGGGTTKSFIQQATLSSFLQKEHHHGHKYAIQI
                     STDAPHPGGRSNAVSFDEGLVYGKLARGAHTAYVPCDATIALPILITSLSQTAAKYMK
                     GRKKPNFTFGRELIVEAP"
     gene            complement(1962..>3457)
                     /gene="speA"
                     /locus_tag="VIJ87_16005"
     CDS             complement(1962..>3457)
                     /gene="speA"
                     /locus_tag="VIJ87_16005"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: protein motif:HMM:NF003763.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008792 - arginine decarboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006527 - arginine catabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HEY5445937.1"
                     /translation="KDQEFIELAFAGARCGKRVVIVIEKLTELDHVLNVAERHEGPMP
                     MVGMRVKLYSKGSGRWEKSGGEAAKFGLTTTELLEVIRRLEEADRVDMLKLLHFHIGS
                     QLTDIKRIKNAMKEAARVYAKVLQMKVPIDLLDVGGGMAVDYDGSKTAFDSSANYTAQ
                     EFANDVIYTIKQVCDDENVPHPTIIQESGRFLAAYHAILITNVLDEIETVVEDITPIA
                     IDEDDPQVVIELGDLRESVTVKNYREYYHDALEHREELFTLFNLGLISLEDRAKGEVL
                     FWDVCERADKYAQQAKYVSEEFCELRRLLCAKYLTNFSVFRSVPDHWALDQLFPIVPI
                     HHLNKTPTEYTTLCDITCDSDGIVDKFVDLHDVKQVLELHPLNPEEPYYLAFMLVGAY
                     QEAMGNNHNLFGAPHEAHVHIDEEGYLIKKVIRGTTVGQAAERARYERTFLHEGFRRL
                     ISRRVKEGELSEAEGADLAQFYESRYDAYTYLAVNGVKGRSRRKYDY"
BASE COUNT          821 a          870 c          890 g          876 t
ORIGIN      
        1 cttcgccgta actaatgtcc gatatgcttt agcttgtcgg gaaattgcag attgcagatt
       61 gatcctcact cctggttctt ctgccgttag ttgcaaaatt gtgcgattca cccaaatctg
      121 gaatccgcaa tctgagatca atattcccga cggacacgtt cgttgtcact tgcaataaca
      181 tccttcaaga tgatacgtag cgctcattcc tagacattcg gaaggagaac tctatgcgaa
      241 gtgtggcaat cattgttttg agcttggttt gtttggtggc cggttgcagt catctgaaat
      301 ccctgcacga ggctcgtggc tcaaactcca acgcagcagt cgctgcgtcg cctgaggcat
      361 taccgagcgg acgcggcaca cgcgaagagg cgaaagcgat gctggacaaa gcagtagaac
      421 actatggcca ggttgggaga acgcaagcgc ttgctgattt caacaagatg aaatcgccgt
      481 tcggcgatcg agacctctat gtcttttgtc tgggttcaga tcacaagatt actgcgaatg
      541 gcgggttctc tcagtacgtt ggcatgagtg tggatgtcct aaaagacgcg tccggaaaat
      601 cgttaggcaa acagataatt gagatggcgg cgcagtccag cgaaggatca atcgaatata
      661 tgtggaccaa tcctgtctcg catctgactg aacacaagat cgcgttcttc aaaaaggttg
      721 gcgaagacgt ttgtggggtg ggagcgtaca gtgcggagta gggagaattg gagatttcag
      781 attgcccgcg gtcacccagc atcctaaatc tgcattctgc aatcttcaat ctgaaatgat
      841 ttagggcgct tcaacgatca gttcgcgtcc gaaagtaaag ttgggtttct tccggccttt
      901 catgtacttc gctgcggtct gtgaaagcga agtaatcaga atcggtaaag caatggtcgc
      961 gtcgcacggg acgtaggcag tgtgtgcgcc gcgggcgagc tttccgtaaa ccaagccttc
     1021 atcaaacgac acggcattcg acctcccacc cgggtgagga gcgtcggttg agatttggat
     1081 tgcatacttg tgcccgtggt gatgttcctt ttggagaaat gacgagagcg tggcctgttg
     1141 aataaaactc ttcgttgtgc cgcccccgag attaattatt ccggagattc gagcgtgagc
     1201 catcacattc atcatgtcga gtacatcctg gatgacgtcg aacatgaaat tgttcttctt
     1261 ctcaaaacgg ccaccagcaa tcccgacggc taaaccgcta tcagcaattg cggggcagaa
     1321 gattgggact cgtgctttgt aagctgaggt cagtacaccg tcttcagaag ctatttccgc
     1381 taactcgcga cccagcaaat gcagaaattc ccgtggtgaa taagaacgtg tttggtccag
     1441 ctgatttgta aatccgccaa tccactcctt ggcttcgcga tattcttcgt cgctagctaa
     1501 caaatcccac atgcggctga tctgcgctga ctcgagttcc gcgtcagtca tggtgggatg
     1561 agcttggaaa tgataacggc ccagggtctc gtggaggtcg tggaacaaca tcgaaccgga
     1621 aagcactaac acatcgacga accgattttt gatcacgtat gcgagcagtc gtcgcatccc
     1681 ggcgggaatt aaggctcccg atccggcgac cataatggtt gtgttatcgc ccaacatgtc
     1741 cagccagatt cgatgagcct cggcaagttg gcgaccgcca aatccggtgc cttccatctt
     1801 ttcgagaagt cctgccaccg aacggtcacg gtccacttga accgggcgcg tgggagtagt
     1861 caggtacttc gatgcttttg gttttcgttg cgtgaccatt cgggttgtca acctctcgaa
     1921 ctagtgtgat ccgtggaata tcaatgcgaa gtgaaatgag tttagtaatc gtactttcgt
     1981 ctcgaacgac ccttgacgcc attgacagca agataggtat aagcgtcgta acgagactca
     2041 taaaactgtg cgagatcggc gccttctgct tcgctcaact caccctcttt tacgcgacgt
     2101 gaaatcagac gtcgaaaccc ttcgtgtagg aaggtccgtt catatcgagc acgctcagct
     2161 gcttggccga cagttgttcc cctgatcact ttcttgatta agtatccctc ttcgtcaatg
     2221 tgaacatggg cttcatgtgg tgcgccgaaa agattgtggt tgtttcccat cgcttcctgg
     2281 taagcgccta caagcataaa cgcgagatag tacggttctt ccggattcag tggatggagt
     2341 tcaaggactt gctttacgtc gtgaaggtcg acgaacttgt cgactatacc atccgaatcg
     2401 caagtaatgt cgcagagagt tgtgtactca gttggcgttt tgttgagatg gtgaatcggc
     2461 acaatcggaa acaattgatc gagcgcccag tgatccggca ctgaacgaaa tactgaaaaa
     2521 ttagtcaggt atttggcgca cagtagacgc cgcagttcgc aaaactcttc ggaaacgtac
     2581 tttgcttgtt gtgcatattt gtcggcccgc tcgcagacgt cccagaaaag aacttcgccc
     2641 ttcgctcggt cctccagcga aatcaggccg agattaaaca gcgtgaacaa ctcttcgcga
     2701 tgttccagcg cgtcgtggta atactcccga tagttcttta ccgtcactga ctcgcgcaga
     2761 tcaccgagtt cgataacaac ctggggatca tcttcatcga tggcgatggg agtaatgtct
     2821 tcgaccacgg tctcgatttc atcgagcaca ttggttatca aaatggcgtg gtacgccgct
     2881 agaaaacgtc ctgattcttg aataatcgtg ggatgcggta cgttttcgtc atcgcaaacc
     2941 tgcttgatcg tgtaaatgac gtcgttcgcg aattcctggg ccgtgtagtt tgccgatgaa
     3001 tcaaaagctg tcttcgaacc gtcatagtca accgccatcc cgccaccgac atcgaggagg
     3061 tcgatcggga ccttcatctg gaggaccttt gcatacacgc gagccgcttc tttcatcgcg
     3121 tttttgatgc gcttgatatc cgtgagctgt gaaccgatgt ggaagtggag cagtttaagc
     3181 atgtcaacgc gatcagcttc ttcgagccgg cgaatgactt caagaagttc ggtcgtagtc
     3241 agtccaaact tagcggcttc acctcccgat ttttcccaac gcccggaacc tttcgaatat
     3301 aacttcacgc gcatcccaac cattggcatc gggccctcat gacgttccgc gacgttgagc
     3361 acatggtcga gttcggtgag cttttcgatg acgataacca cgcgcttacc acaccgggcg
     3421 cccgcaaagg ccaactcgat gaattcctgg tctttaa
//
LOCUS       DATCGC010001678         1311 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_91482, whole genome shotgun sequence.
ACCESSION   DATCGC010001678 DATCGC010000000
VERSION     DATCGC010001678.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1311)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1311)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1311
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91482"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            214..1305
                     /gene="ada"
                     /locus_tag="VIJ87_16010"
     CDS             214..1305
                     /gene="ada"
                     /locus_tag="VIJ87_16010"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF011964.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-binding transcriptional
                     regulator/O6-methylguanine-DNA methyltransferase Ada"
                     /protein_id="HEY5445938.1"
                     /translation="MRLALKSDSHITSTEDELWQAVVAKDARYDGQFVFAVSSTKIYC
                     RPSCPSRRANRDHVSFYSLAEAAEQAGFRACLRCEPKRARVMDPQIEMVQKVCRYLDE
                     GDSDTVKLADLATRTGVSVFHLQRTFKSIMGISPRQYLAARRFGNFKTAVKEGKSVTT
                     ALYDSGFNSSSRLYENASDELGMTPATYSRGGRGVNISYSIVDSPLGRLLVAMTERGV
                     CSVMMGDTDKQLEKALKEEFSEANILRADPRLRNTVGIVLKHLAAREPHLNLPLDIRA
                     TAFQRQVWEKLRAIPYGETVSYGDVAKALGNPGAVRAVGHACATNPVALVIPCHRVVR
                     EDKSLGGYRWGLERKRRLLETEKARAAKE"
BASE COUNT          335 a          298 c          377 g          301 t
ORIGIN      
        1 aaagcaattg tccgatatgc ttcagcttgt cgtcgtgatc tgttacgaga ctccgtgatc
       61 gtagatagcc gttggggagt gatgcgacaa gctaaagcat atcggacata aacctgcata
      121 tcggacgtta atttgaccgc aagaagcgga tagatagatc ttcgtgggtg ctttacgatc
      181 caatccagat taaacatact ggaggacgca cacgtgagac tcgctttgaa atcagattcc
      241 catatcacat cgactgaaga cgaactctgg caggctgttg ttgcgaaaga cgcccgttat
      301 gacggccagt ttgtgttcgc agtgagctca acaaaaatct actgtcgacc atcgtgtcct
      361 tcacggcgtg ctaatcgcga ccatgttagt ttttattcac tggcggaggc ggcggagcaa
      421 gctggctttc gcgcgtgcct gagatgtgaa ccaaaacgag cgagggtaat ggatccccag
      481 atcgagatgg tgcagaaggt ttgtcggtat ctcgacgagg gcgattcaga cacagtcaaa
      541 cttgctgacc tggcaaccag gactggtgtc agtgtgtttc atcttcaacg gacatttaag
      601 agcatcatgg gaattagtcc gcggcaatac ctggctgcga gacgattcgg caacttcaaa
      661 acagcggtga aggaagggaa gtcagtcacg actgcactct acgattcggg tttcaactcg
      721 agtagtcgtc tttacgaaaa cgcgtctgac gaactcggga tgacgccggc gacgtatagt
      781 cgtggcggcc ggggagtaaa cattagttac tcgatcgtcg actccccgct gggtcgttta
      841 ctggttgcta tgacggaacg aggtgtgtgt tcggtgatga tgggagatac ggataaacaa
      901 ctggagaaag ccttgaaaga agaattttcg gaggcgaaca ttttgcgggc cgacccaagg
      961 ctacgtaata cagttggaat cgtgctcaaa caccttgcag ccagggaacc acacctcaac
     1021 ttgcccttgg acattcgggc tactgcattt caacgacagg tctgggaaaa gcttagagcg
     1081 attccttatg gagagaccgt gtcgtacggc gacgttgcca aagcacttgg caatcccgga
     1141 gcagttcgtg ccgtcggtca tgcgtgtgcg accaatccag tggcactcgt aattccgtgt
     1201 catcgagttg tgcgggaaga caagagtttg ggcggctatc gttggggatt ggagcgcaag
     1261 agacggttgc tggaaactga aaaagcccgg gcagcaaaag aatagatcga t
//
LOCUS       DATCGC010001679         1137 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_358782, whole genome shotgun sequence.
ACCESSION   DATCGC010001679 DATCGC010000000
VERSION     DATCGC010001679.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1137)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1137)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1137
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_358782"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..887
                     /locus_tag="VIJ87_16015"
     CDS             <1..887
                     /locus_tag="VIJ87_16015"
                     /inference="COORDINATES: protein motif:HMM:NF024578.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEY5445939.1"
                     /translation="LSVRRAPVGDGLVRFKIRSARLSLTNIGGVALNESGETVGIVNA
                     VEGPEATILPTAVVQRAAKRVLARHASVPRPWLGVKGEPLARVNVEQFKNWGWKGDRA
                     NWLVERHLGILLTSIAPGSPAAFAAFRPGDVILKVNDKDVESGDDFSWLLDQAGPSSS
                     VTFTLARPDRLNDEAVKVELSGLLNPESANGFSNVPPSGSLISQGIETVALRPMVASQ
                     LNASPGLLVVYVDPLSVAFEAGLRPADVIESIDGKPIPVVANNFFPGTVPGAKSSFEI
                     VRKKQKVVITVRAPEKND"
BASE COUNT          274 a          283 c          306 g          274 t
ORIGIN      
        1 tgctctcagt aaggcgtgcg ccggttggcg atggactggt tcgtttcaaa ataagatccg
       61 ctcgcttgtc tctgaccaac attggcggcg tggcattgaa tgaatccggg gaaaccgttg
      121 gcatcgtcaa tgccgttgaa ggtcccgagg caacaatatt gcccaccgca gttgtacaac
      181 gagctgcgaa acgcgtactg gcgcgacatg ctagcgtccc tcgtccatgg cttggagtaa
      241 aaggtgaacc gctggcccgg gtaaacgtcg aacagtttaa gaactgggga tggaaaggcg
      301 atcgagcaaa ctggctagtg gagcgtcacc tgggaatcct gctcacctcc atcgcaccag
      361 gaagtcccgc agctttcgca gcgtttcgtc cgggtgatgt catactgaag gtaaacgaca
      421 aagacgttga gagcggcgac gacttctcct ggttgctgga tcaggcagga ccaagtagtt
      481 ctgtgacttt tactcttgca aggcctgatc gtctgaatga cgaggcagtt aaagtagaac
      541 tctcgggttt gctgaatcca gaatccgcaa atggattttc aaatgtaccg ccgtccggat
      601 cgttgatctc gcaaggcatc gaaacggttg ctttgaggcc aatggttgct tctcagttga
      661 atgcgtcacc cggtctgctt gttgtttacg tcgacccatt gagcgttgca tttgaggcgg
      721 gtctacggcc agctgacgta atcgagtcga tcgacggaaa gcccattcct gtagtagcaa
      781 acaatttctt tcccggtacc gtgcctggtg ccaagtccag cttcgaaatt gtgcgcaaga
      841 agcagaaggt ggtcataacg gttagggcgc ccgagaagaa cgactgagga tttgttctta
      901 gaatttagag cttagacctt agagcttaga actttgtacc tgaactcgat cctcattgtt
      961 cgtgccggca gccactaaga accaagtacc aagttcaaag caaagtacaa agctcttccc
     1021 gcgtgtgtta tcttttgccc tcacaaattc ggcaaaggac aatccagtac acgattatgt
     1081 ttcccgaggc agtcgctcgt tatcacgatc tactcggcga tcaaaagcta gccgacg
//
LOCUS       DATCGC010001680         1522 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_124612, whole genome shotgun sequence.
ACCESSION   DATCGC010001680 DATCGC010000000
VERSION     DATCGC010001680.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1522
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124612"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            184..1161
                     /locus_tag="VIJ87_16020"
     CDS             184..1161
                     /locus_tag="VIJ87_16020"
                     /inference="COORDINATES: protein motif:HMM:NF014841.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HEY5445940.1"
                     /translation="MNNTNLTIWCNNDFGPADQREVSLLTNGVGKHKLLMFAENDSSD
                     QAMRALNAADIAFGYPAPADVLASPSLRWIQLNSAGYTSYDHEEIKRQLVAKNVVLTN
                     SSAVFDEPCAQHLLAMIMSLARQLPSALDAQRGDRTWKMDALRPASRLLNGQTVLLLG
                     FGAIARRLVELLTPLHVNLVAVRRHVSGLEPIEVADLSKVDELLTQADHVVNILPAND
                     QTRHFLNAARLGSLKPGAIVYNIGRGATLDQAALEKELKSGHVAAAYLDVTDPEPLPL
                     DHPLWTTPNCFITPHSGGGHSDEKERQVNHFLKNLRRFERGDDLINRVV"
BASE COUNT          370 a          432 c          370 g          350 t
ORIGIN      
        1 cccaagcttc agcttggggt cagagcagta cctaaagttg acgaaccgtt ttaacggttt
       61 atgagtgtcg tgcccatcgg tgtttatatc accaagcaaa ccgttgaaac ggttcctata
      121 gtattgagcg caccatagcc ccaagctaaa gcttggggag aatgagagcc cgactaagac
      181 tcaatgaata acaccaacct gactatctgg tgcaacaacg acttcggtcc cgccgatcaa
      241 cgcgaagtgt cgttactcac taacggcgtt ggtaaacata aattgctgat gtttgctgaa
      301 aacgattcaa gcgatcaggc aatgcgtgcc ctgaatgctg ctgacattgc gtttggttac
      361 cccgcacctg ccgacgtact tgcgtcgccg agtctccgtt ggatccaatt aaactcagcc
      421 gggtatacga gctacgacca cgaagaaatc aaacgtcagc tcgtggccaa gaacgtagtc
      481 ctaacaaaca gctccgcagt gtttgatgag ccgtgcgctc aacacctact ggccatgatc
      541 atgtcgctcg cgcggcagtt accctcagct cttgatgcgc aacgtggtga cagaacatgg
      601 aagatggatg ctctccgtcc tgcatcacga ctacttaatg gccagaccgt attgctgctt
      661 ggttttggcg caatagctcg ccgcctggtt gagttgctaa caccgcttca cgtgaatctg
      721 gttgccgttc gtcgacatgt ttcaggtctc gagccgattg aagttgctga tctttcaaaa
      781 gtcgacgagt tactcactca ggcggaccac gttgttaaca ttcttcccgc aaacgatcag
      841 accaggcact ttctaaatgc ggcacgtctc gggagtctga agccaggcgc gatcgtctac
      901 aacatcggca gaggagcgac gctcgatcaa gctgccttgg agaaagaact aaaatccggt
      961 catgttgctg cggcttatct cgatgtaact gatcctgaac ctttaccttt ggatcatcct
     1021 ctctggacaa cgcccaactg cttcatcaca ccacacagcg gtggcggaca ctcggatgag
     1081 aaagaacgcc aggtaaatca ctttctgaaa aacttgcgtc ggttcgaacg cggcgacgat
     1141 ttgattaacc gcgtcgttta gaaccttcgg aacgacacag gagttttgcg gttctgcaac
     1201 tgctccatgc ggctctgccg ctctccgtgc gaaaagcctc cggctttccg cgcccaccgt
     1261 cccgcaatgc ggctatgccg ccgaggctta gcctcaaaac tttttagact acatacggaa
     1321 agccggaggc attccgcacg gagagcggca gagccgcaag gctggacctc aaacaacgtt
     1381 cagaccgata ccggcacttc ccactgcccc gtctttgccg aacgaaacac tgactcaagc
     1441 accgccatgt ttcgaatcga gtcttccaac gagagagccg gttgcctgtc ttctctaatc
     1501 acttgtgaaa acaggtcccc tt
//
LOCUS       DATCGC010001681         2452 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_57912, whole genome shotgun sequence.
ACCESSION   DATCGC010001681 DATCGC010000000
VERSION     DATCGC010001681.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2452)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2452)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2452
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57912"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..322
                     /locus_tag="VIJ87_16025"
     CDS             <1..322
                     /locus_tag="VIJ87_16025"
                     /inference="COORDINATES: protein motif:HMM:NF015251.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445941.1"
                     /translation="VGEEAIYVDFFGVPAATNFMVAKLALRTKAPIMPMFAPWDEKRR
                     KFDLQVSPPVTVELTGDEEADVLNLTAKLSRITEDKIRSYPDQWLWIHKRWKTRPPGE
                     PSIY"
     gene            378..1121
                     /locus_tag="VIJ87_16030"
     CDS             378..1121
                     /locus_tag="VIJ87_16030"
                     /inference="COORDINATES: protein motif:HMM:NF015961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEY5445942.1"
                     /translation="MDLPADAKIQERRMKDSVERAYSFASLSEYSPWERFQIKLADLT
                     FYLLIKFIGLTVRWTVEGVEHLESISRSGALPIYTLWHNHIFLGTYFLRNRRIVVMTS
                     RSFDGEYIARFIQRFGYGAARGSSTRGGIGAVRDMVKLMRSGCPTAFTIDGPKGPRHV
                     AKMGAVLLAKKTGNAVLPFTVTPSKYFTINSWDRLQIPMPFTRALTTYAPPIQVPKDA
                     TDEALQAKRDELQQVLDELCARGDQWRQA"
     gene            1229..>2452
                     /gene="pepT"
                     /locus_tag="VIJ87_16035"
     CDS             1229..>2452
                     /gene="pepT"
                     /locus_tag="VIJ87_16035"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0045148 - tripeptide aminopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HEY5445943.1"
                     /translation="MRSILALALCLLAAVGSQAQSQLKPPTESALDRFLRYVKIDTQS
                     AEDQTTVPSTRKQLNLATLLSKELTALGAQGVRVSEFGIVYAMVPGNLPDNSKVPVVG
                     LIAHMDTSPEVSGANVNAIIHKNYQGGDIVLPKDPSQIITVEKNPVLKNLIGDDIITA
                     DGTTLLGSDDKSGCAEIMTMIDTLRQNPQIKHGTLAVAFTPDEEVGGGIEKFDVKGFG
                     AQVAYTVDGETLGEISNETWSAKTATVTFKGRNTHPGTAKGIMVNALFAIADYLGRFP
                     HDMLPETTADRVGFVHPYTGTLEVEQSSLKILLRDFDVSGIDAKEKMLRDMAAQTQAK
                     FPDVKISVDIKENYKNMKEGLKEFPELTDNAIEASKRAGLKPYIKPIRGGTDGARLTF
                     EGLPTPNLFTGGENFH"
BASE COUNT          638 a          632 c          653 g          529 t
ORIGIN      
        1 cgtcggtgag gaggcgatct acgtggactt ctttggtgta cctgccgcaa ccaatttcat
       61 ggtcgccaaa ctcgcgttgc gtacaaaggc gccaataatg ccgatgtttg caccctggga
      121 tgagaagcga cgaaagtttg acctgcaagt ttccccaccg gtcacggtgg aactaacggg
      181 cgatgaagag gctgatgttc tgaacctgac ggccaaactc tctcggatca ctgaagacaa
      241 aatcagaagt tatccggacc aatggttgtg gattcataag cgctggaaaa cccgcccgcc
      301 cggtgaacct tccatctatt aggacattgg cgattggcaa tcggcgatgt ctgctagact
      361 ttccgctaga aatctcgatg gatctcccag ctgacgcaaa gattcaagaa cgcagaatga
      421 aggactcggt cgagcgcgcc tactcgttcg ctagtctctc ggagtacagc ccgtgggaac
      481 gctttcagat caaacttgcg gacctgacgt tctacctgct gattaaattc ataggtctga
      541 ctgttcgctg gacagttgaa ggcgtggaac atcttgaatc gatttcgcgc agcggtgcat
      601 tgccgattta cacgttgtgg cacaatcaca tcttcttagg tacctacttc cttcgtaacc
      661 gacgaatcgt ggtgatgact tcccgaagtt ttgacgggga atacattgcc cggttcattc
      721 aacggttcgg gtatggcgct gcacgcggct caagtacacg cggtgggatc ggggctgtta
      781 gggacatggt gaagctcatg cgatcagggt gtcccacggc tttcacgatc gacgggccga
      841 agggtccccg ccatgtggcg aagatggggg ccgtcttact ggcaaagaaa accggcaatg
      901 ccgtcctccc ttttacggtt actccgtcaa agtatttcac aatcaacagt tgggaccgac
      961 ttcaaatacc gatgccgttc actcgcgcac tcactaccta cgctccgcca attcaagtcc
     1021 caaaagatgc tacagacgag gccttgcagg cgaagcgcga cgaattacag caggtgttgg
     1081 acgagttgtg tgcacgaggc gaccagtggc ggcaagcgta aagacgatcc gcaaatcgca
     1141 cagatttcag gcagcgcgct tttgcattta cgcatcgatt taactgatca tacgtatctc
     1201 ccaaaacaat tcagtgaaag gtagtcagat gagatcaatt cttgcactag cattgtgtct
     1261 gttagcggcc gtcggaagtc aggcacaatc ccaactcaag ccacccacag aatcagcact
     1321 cgatcgattt cttcgctacg tgaagatcga tacgcagtcg gccgaggatc aaacgacagt
     1381 tcccagtacg cgcaaacaac tcaacctggc aaccctgtta tccaaggagt tgaccgcact
     1441 cggagcccag ggtgttcgcg tgagtgagtt tggaattgtc tacgctatgg ttcccggtaa
     1501 cctgcctgac aattcaaagg tgcctgtcgt cggattgatt gcacacatgg atacgtcgcc
     1561 cgaagtttcc ggcgcgaatg taaatgcgat cattcacaag aactaccagg gtggtgacat
     1621 cgtgctgccg aaggatccga gccagatcat cacagttgag aagaatccag tccttaagaa
     1681 cctaatcggc gacgacatca tcaccgctga cggaaccact ttgcttggct cagacgacaa
     1741 atccggatgc gctgaaatca tgacgatgat cgatacgctc cgacagaacc cacaaatcaa
     1801 acatggaaca cttgcggttg ctttcacgcc tgacgaagaa gtcggaggag gcatcgagaa
     1861 gtttgacgtc aaaggttttg gagcacaggt ggcctacacc gtcgacggag aaacgcttgg
     1921 cgaaatcagc aacgaaacgt ggagcgcaaa aaccgcgacc gtaacgttca agggcagaaa
     1981 cacgcaccct ggtaccgcca aaggaattat ggtcaacgcg ttgtttgcta tcgcggacta
     2041 cctcggacgt tttcctcacg acatgttacc ggagacaaca gcagaccgag ttggttttgt
     2101 tcatccgtac accggtacgt tagaagtcga gcaatcgtcg ctgaagatac tgctgcgtga
     2161 tttcgatgtg agtggcattg acgcgaaaga aaaaatgctg cgcgacatgg cggcgcaaac
     2221 acaggcaaag tttccggacg tgaagatctc ggtcgacatc aaagaaaact ataagaacat
     2281 gaaggaaggg ttaaaggagt ttccagagtt gaccgataac gcgatcgaag cgtcgaagcg
     2341 agcgggtctt aagccgtaca tcaaaccgat tcgcggcggg acggacggcg cgcgattaac
     2401 gttcgaagga ctcccgaccc caaacttgtt tacgggtggt gagaacttcc ac
//
LOCUS       DATCGC010001682         1267 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_192022, whole genome shotgun sequence.
ACCESSION   DATCGC010001682 DATCGC010000000
VERSION     DATCGC010001682.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1267)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1267)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1267
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192022"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..776
                     /locus_tag="VIJ87_16040"
     CDS             <1..776
                     /locus_tag="VIJ87_16040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001040566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HEY5445944.1"
                     /translation="MVDDKELLELVELEVRELLSKYKFPGDDTPIVIGSALKALEGDT
                     SEMGEGAILKLMEAVDSFIQEPVRDVDRPFLMPVEDVFTISGRGTVVTGRVERGIVKV
                     GEEIEIVGFKATQKTVATGVEMFRKLLDEGQAGDNIGVLLRGTKREEVERGQVLAKPG
                     SITPHNRFNAEAYVLTKEEGGRHTPFFNGYRPQFFFRTTDVTGVVKLPEGTEMVMPGD
                     NINVEIELITPVAMDDGLKFAIREGGRTVGAGVVTKISQ"
     gene            808..960
                     /gene="rpmG"
                     /locus_tag="VIJ87_16045"
     CDS             808..960
                     /gene="rpmG"
                     /locus_tag="VIJ87_16045"
                     /inference="COORDINATES: protein motif:HMM:TIGR01023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEY5445945.1"
                     /translation="MRELVGFACDQCKRKNYTSTKNRKKTTDKLSLKKFCASCRAHTL
                     HREVKV"
     gene            973..1049
                     /locus_tag="VIJ87_16050"
     tRNA            973..1049
                     /locus_tag="VIJ87_16050"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1007..1009,aa:Trp,seq:cca)
     gene            1072..>1267
                     /gene="secE"
                     /locus_tag="VIJ87_16055"
     CDS             1072..>1267
                     /gene="secE"
                     /locus_tag="VIJ87_16055"
                     /inference="COORDINATES: protein motif:HMM:TIGR00964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HEY5445946.1"
                     /translation="MGEWIQKIQDGVQHATEFVQESWQELKKVHWPSRKETYAATLVV
                     IIVVVLISVYLALVDLALTKA"
BASE COUNT          314 a          289 c          374 g          290 t
ORIGIN      
        1 atatggtgga tgacaaagag ctcttggaac ttgtcgagct cgaagtccgc gagctactct
       61 cgaaatacaa gtttcctggt gacgatactc ctatcgttat cggcagcgcg ctgaaggcgc
      121 ttgaaggcga cacatccgaa atgggggaag gcgcgatctt aaaactcatg gaagcagtag
      181 attccttcat tcaagaaccc gtgcgcgatg tcgacaggcc ttttctgatg ccggtcgagg
      241 acgtttttac gatcagcgga cgcggcaccg ttgtcacggg ccgggtggag cgcggtatcg
      301 tgaaagttgg cgaggaaatt gaaattgtcg gcttcaaagc aactcaaaag actgtggcca
      361 ctggtgtgga aatgttccga aaactgctcg acgaggggca agctggtgac aatatcggtg
      421 tcctgctccg cggtaccaag cgagaggaag tggagcgcgg ccaggttctg gctaagccag
      481 gcagcattac gccgcacaat agatttaacg ctgaagctta cgttctgacc aaagaggaag
      541 gcggccggca tacacctttt ttcaatggtt atcggccgca attctttttc cgcacgacgg
      601 acgtgacggg agtcgttaag ttgccggaag gcactgaaat ggttatgccg ggcgataaca
      661 ttaacgtaga aatcgagttg atcacacctg tcgccatgga tgatgggctg aagttcgcta
      721 ttcgtgaagg tggccggacc gtcggcgcag gagtggttac aaaaatcagt cagtaacggg
      781 ttattgctgc caagggaggt tgcgaccatg cgggaactgg taggatttgc gtgcgatcaa
      841 tgtaagcgta agaattatac atcgacaaag aaccggaaga aaaccacgga caaactgtct
      901 ctcaagaagt tttgtgcttc ttgccgggcc cacaccctgc atcgcgaggt taaagtctaa
      961 cggggataca gggggtcagt agctccaatt ggtagagcgc cggactccaa atccggttgt
     1021 tgcaggttcg agtcctgcct gacccgccag tgtaattcgt cagagcacct catgggggag
     1081 tggattcaaa aaattcagga tggcgttcaa catgcgaccg agtttgttca ggagtcctgg
     1141 caagaactga aaaaggtcca ctggccgtcg cgtaaggaaa cttatgcggc gactttggtt
     1201 gtcattattg tcgtagttct tatctccgtg tatctggcgc tcgtcgatct tgcgttgacg
     1261 aaagcca
//
LOCUS       DATCGC010001683         1042 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_457867, whole genome shotgun sequence.
ACCESSION   DATCGC010001683 DATCGC010000000
VERSION     DATCGC010001683.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1042
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_457867"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            27..>1042
                     /locus_tag="VIJ87_16060"
     CDS             27..>1042
                     /locus_tag="VIJ87_16060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445947.1"
                     /translation="MQQSGSALTAASTFSATGQATFASTVALTGASTMLITFTGQAFG
                     SADLTAQSSLTAVPFVQRLASTSVSGASTLVAAGLRTATGSATLSGATTLTVNGTRIQ
                     STSVSMSGQTSITAQGTGLKFGQLTMSGMGNASGTPVRLVTAQAGFDAATVFSTASTR
                     ITHGSAALVGDSEAIAIGASEYYGILSLTGESDYIVAVALMPPLASKGTLFLRRTPII
                     VEVIDKSGSLFQRIDTSQVLSVNYEGLIHTTQITEFLGPNLYGESTVLNLTQTQANLV
                     YSSTEIYFSPVDLYKQVITNNDELIAAFDDEQVISVPHEVRRGYEDGDFQEELELEND
                     QLYLV"
BASE COUNT          259 a          262 c          257 g          264 t
ORIGIN      
        1 ctactttgac agtcgccggt actcgggtgc aacaaagtgg aagcgcattg accgcagctt
       61 ctactttcag cgccaccggt caggccacat ttgcaagcac agtagcgttg accggtgcca
      121 gtaccatgct tatcaccttc acgggtcaag catttggttc tgccgacctg acagcacaga
      181 gtagtttgac agccgttcca tttgttcaaa ggctcgcatc tacgtctgtt tctggtgcgt
      241 ccactcttgt agccgctgga ctaaggacag ccacgggcag cgcgaccctc agtggtgcta
      301 ccactttgac agtcaatggc acacgtattc aatctaccag tgtgtcaatg tctggacaga
      361 caagtatcac ggcgcagggc actggtttga agtttggtca attgactatg agcggcatgg
      421 gcaatgcatc gggtacgcca gtacgcctag tgacagccca agccgggttt gacgctgcca
      481 cagttttctc cacggcgtca actcgcataa cccacggctc tgccgcgttg gttggagatt
      541 cagaagccat tgccattggt gcatctgaat actatggaat cctgtccctt accggagagt
      601 ccgattacat agtcgcagtc gcccttatgc cgcctttggc atcgaaaggc acgctgttcc
      661 tgcggagaac tccgattatt gtagaagtaa tagacaagag tgggtcgcta ttccagcgaa
      721 tcgacacttc gcaggtactt tcagtgaatt acgagggact tattcacact acgcagatta
      781 cagaattcct tggaccaaat ttgtatggcg agtctacggt cctgaacttg actcaaacac
      841 aggcgaatct ggtttatagt agcaccgaaa tttatttttc ccctgtagat ttatataaac
      901 aagttattac gaataacgac gaacttatcg cagcctttga tgatgagcag gtaatcagtg
      961 ttccacatga agttcgcagg ggctacgaag atggagattt ccaagaagag ctagagcttg
     1021 aaaatgacca gctatatctc gt
//
LOCUS       DATCGC010001684         1395 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_289899, whole genome shotgun sequence.
ACCESSION   DATCGC010001684 DATCGC010000000
VERSION     DATCGC010001684.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1395)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1395)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1395
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289899"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..295)
                     /locus_tag="VIJ87_16065"
     CDS             complement(<1..295)
                     /locus_tag="VIJ87_16065"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY5445948.1"
                     /translation="MTSSKYLVRLVVLATVLLTLASLVFAQDYRGKVQGFVKDENGSA
                     ILGAQVVLRNVKTGVEVTRNSDSEGRFVFDFVDPGDYVLMAEQTGFKKAVQENI"
     gene            complement(880..>1395)
                     /locus_tag="VIJ87_16070"
     CDS             complement(880..>1395)
                     /locus_tag="VIJ87_16070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445949.1"
                     /translation="VVKGPAQVFTPIERDGYVYAGALAVGGGMVRLRPDGAGVAAEQV
                     YFERGLPNGFGGAVLVGDYLYGAEPSGQTLVAVEFTTGKTKWKAENFRASITYADGNL
                     YVHKWNGDFVLAEATPEGYREKGRFTLPNQPKKKQGQYDDLAYAYPVIANGKLYIRDA
                     ETLWAYDIKRQ"
BASE COUNT          333 a          362 c          350 g          350 t
ORIGIN      
        1 cgatgttctc ttgaacagcc tttttgaagc ctgtttgctc agccatcagg acgtagtcgc
       61 ccgggtcgac gaagtcgaac acaaagcgac cttcactgtc cgagtttcgt gtgacctcga
      121 cgccagtttt gacgtttcgg agcacgacct gggcaccgag aatggcgcta ccattttcgt
      181 ccttaacaaa cccttgaact ttaccgcgat agtcttgagc aaaaaccagc gacgctagtg
      241 tcaggagaac tgtagctagc accaccaatc gcacgagata ctttgaagaa gtcatgttta
      301 cctccagagt ccaggctacg aatgttgttg acggagaacc gttgccgttc gaaagatgac
      361 aaagagaagg aatgacttcg aatgcttgaa ttaacaattc gaaagttatg aaagccgggt
      421 ggagatgact tattgctggc gcttctgagt gcttacagtt ttcacctaag cgccgttcaa
      481 agagctttcg gaactaaagc tgtgtggtat gaccaatctc tcaaaactgt gaaatatgtg
      541 gtgagtaacg ctgcgtccgc attttctgcc tgagcgttga gtctgtcaag cattaatctt
      601 gggcaaagac tgattcaggt atgaatgcgc aaccgatttg ttcgagtttt tggtccaact
      661 actcgtcgtg agctagttat gcggccaagc aaacagtcga acgggcagct gtagcatgct
      721 tacgactaag agtaattggt ctgaccatca gttgattggt gtgctcattt gtctgtcagc
      781 tgaacaaaac ggaacgagaa agcgcggtga aaagtgttga agattggtca tcatggccaa
      841 cgggcgaccc ggggagactc gagtcatgcg gattagttgc tattgtctct tgatgtcgta
      901 ggcccacaat gtttctgcgt cgcgaatgta aagcttcccg ttagcaatga ccgggtacgc
      961 atacgccagg tcatcatact gtccctgttt cttcttgggc tggtttggca gtgtgaaacg
     1021 gcccttttcg cgatagccct caggggtcgc ctccgccaat acgaaatctc cattccactt
     1081 gtgaacatat aaattcccat ctgcatacgt tatcgaggcc ctgaaattct cggccttcca
     1141 ttttgtcttc ccagtagtga actcaaccgc gacgagcgtt tgtccggatg gttccgcgcc
     1201 gtaaagatag tcacccacca acactgctcc accgaagccg ttcggaagtc cgcgctcgaa
     1261 gtaaacctgc tctgcagcga ctccggctcc gtccggtctg agacgaacca ttccacctcc
     1321 gacggccagg gcacctgcgt acacgtatcc gtcacgctcg atcggcgtga aaacctgggc
     1381 cggccccttc actac
//
LOCUS       DATCGC010001685         1050 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_358855, whole genome shotgun sequence.
ACCESSION   DATCGC010001685 DATCGC010000000
VERSION     DATCGC010001685.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1050)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1050)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1050
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_358855"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            109..>1050
                     /locus_tag="VIJ87_16075"
     CDS             109..>1050
                     /locus_tag="VIJ87_16075"
                     /inference="COORDINATES: protein motif:HMM:NF021041.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pectate lyase"
                     /protein_id="HEY5445950.1"
                     /translation="MLKLNQRRLLLIMPLLVVVYFCALTDAAAQPSRKVALEAMKQAT
                     NFMTTKVAYRGGYVWAVSEDFKRRYGEVPARPTQIWIQEGTPLVGMTYLDAYDVTGDR
                     FYLESARHAADALIAGQQTLGGWHYFIDFDPRGLNEWYVNEASQFKWGMEEYRHYYGN
                     ATFDDGNTASATRFLLRFYTTTREPRYRVPLRKALDFIVSAQYKNGAWPQRYPLRNEF
                     SHDGFPDYTSYYTLNDGSAKSNIELLVEAADKLGDRRYLAAAKRGVDFMIHIQGPPDQ
                     AAWAEQYDPKTMRPTKARTHEPAGFVIRESIQVIEILE"
BASE COUNT          277 a          285 c          263 g          225 t
ORIGIN      
        1 ccgagaaaaa cgatccacga aatcacacga aataacacga acgaaatgcc caaggccaat
       61 tagagttttt gagacagtcg acattctgtg caaagccggt tgatattgat gctcaagcta
      121 aatcagcgtc gcttactcct gatcatgccc ttgctggttg tggtctactt ttgtgcgttg
      181 actgatgccg cagcacaacc ctcgagaaaa gtcgcgcttg aggcgatgaa gcaggcgacc
      241 aattttatga ccaccaaagt cgcctatcgc ggtggttacg tctgggctgt ttcagaagac
      301 ttcaagcgac gttacggaga agtgccagcg cgcccaacac aaatctggat acaagaagga
      361 acacctctcg tagggatgac ctacctggac gcgtacgacg tcaccgggga tcggttctat
      421 ctcgagagcg cgcgccacgc tgccgacgca ttgattgcgg gacaacaaac attaggcggt
      481 tggcattact ttatcgactt cgatccaaga ggcttaaatg agtggtacgt caacgaagcg
      541 tcgcaattca aatggggaat ggaagaatat cggcactact acggtaacgc tactttcgac
      601 gatggcaata ccgctagcgc aacccgcttc ctccttcgct tctataccac cactcgagag
      661 cctcgatatc gcgtaccact tcgcaaagca ctcgacttca tcgtgtcagc ccagtacaag
      721 aatggcgcct ggcctcagcg ttatcctctc cgcaatgagt ttagccacga cgggtttcct
      781 gactacacct cttattacac actcaatgac ggctcggcga aaagcaacat cgagttgctg
      841 gtggaagcgg cagacaagct tggtgatcga cgttatcttg cagcagcaaa gcgcggcgtt
      901 gacttcatga ttcacattca aggtccgccc gatcaagccg catgggccga acaatatgat
      961 ccgaagacca tgcgaccgac aaaggcgcgc actcatgaac cggcgggctt cgtgattcgt
     1021 gaaagcatcc aggtaatcga aatcctggag
//
LOCUS       DATCGC010001686         1401 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_223801, whole genome shotgun sequence.
ACCESSION   DATCGC010001686 DATCGC010000000
VERSION     DATCGC010001686.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1401)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1401)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1401
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_223801"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(797..1156)
                     /locus_tag="VIJ87_16080"
     CDS             complement(797..1156)
                     /locus_tag="VIJ87_16080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445951.1"
                     /translation="MGPNKAVVKGDAIYDARTGKLIQDGLSNEHVLADYASHHYLALP
                     EVDKAGQPWTLNGQPVYCIRGCQYETLDDHHPHLRRCADCGGMAIRTEELTIERDCIR
                     CTQCGHEFDARLEMMES"
BASE COUNT          322 a          374 c          352 g          353 t
ORIGIN      
        1 cacatagcct cggagatttg cttgcaaagg gcagcgcctc agtttgaaac tgctgcttcg
       61 tgtagctact ccccgatgta aacaccaaga tcaactgatg atcgattttt gtccggttca
      121 gcgcctgaca ggctcgttca gcctcttccg tcgtagccat ctcaacgaac gcatcggcaa
      181 tcgcccgtcc ggtctaatcg attctcctta tcacggcttg aaaaattcct gttgagcgtt
      241 cgcgagatga ataaggtgga aacttcttgc cttgattcag gcgtggtttg gatgagcagt
      301 actccgtcac ggtgagcatg ttctatcaat gaccaacgtc tcataacgta tatattcgct
      361 ggtcggaaag cttaggtact tccgcagatt gatctttata ttaaaagggt ctatttagga
      421 ctttgagccc aggtcttata ttcacctcgc accgtgcgag cagtttcgtc tatccgaggg
      481 tttttctcag gcgtagctgt agccaggagg ggatgtgatg agcaacctga ttccaccaaa
      541 tagtgtttcc ctcatcggct aactttcgtt cgccgccctt cgacggatgg gcctcttgcc
      601 ggtgccgttg gcacacaagg attcgtcctc tcatcgcaag cagggcccct cgcacgacgt
      661 cggaagtaaa gcgtcgtcga aagcctgatg gggttgcaga atgaataccg ccccataacg
      721 cgctcacgcg cggctgggag ggccttcttc caccgaggag ggcctcccta taaatcgtgc
      781 acgttgacct ctctacctaa ctttccatca tttccaatcg agcatcaaat tcatgtccgc
      841 attgagtaca ccgaatacaa tcgcgttcaa tggttaactc ctcagtgcga atggccatgc
      901 caccacaatc ggcgcaacga cgcagatgag ggtgatgatc gtccaacgtt tcgtactgac
      961 aaccgcgtat gcagtacacg ggctgaccat tgagtgtcca tggctggcct gccttgtcca
     1021 cttctggtaa cgccaagtaa tgatggctgg catagtcggc gagaacgtgc tcattgctca
     1081 gtccatcttg gatcagcttt ccggtccggg catcatagat ggcatctccc tttacgacgg
     1141 ctttattggg tcccatgtgc tcctccgatt aacgaagttc ccacaagata gctctaggac
     1201 gttaggcctt actcagttgg aaaacaaatc cgaagtcatc tgatggagtc caagcggatg
     1261 cacgacaggc tcacgtacgt taggactgtc gtccacacta gacgcattcg atgcttgagg
     1321 ctggtcaaaa atgctcagcg tgcagaaagg acttgtttca ggaagagaag gagcgattca
     1381 gtgtccgcga cgaggagata c
//
LOCUS       DATCGC010001687         1463 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_290029, whole genome shotgun sequence.
ACCESSION   DATCGC010001687 DATCGC010000000
VERSION     DATCGC010001687.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1463
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290029"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..705)
                     /locus_tag="VIJ87_16085"
     CDS             complement(<1..705)
                     /locus_tag="VIJ87_16085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012535740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY5445952.1"
                     /translation="MITTGTKETQKKSMAYDSSSITILEGRDAVRKRPAMYIGSTGEI
                     GLHHIVYEVVDNSIDEALAGYCDTIEVAIHLDNSITVIDNGRGIPVDEIKKEKRSAAE
                     VVMTKLHAGGKFDSNAYKVSGGLHGVGVSCVNFLSETLHLEIWRDGLTYEQEYARGIP
                     VAPLKQTGKTRRRGTKITFRPDGQIFTETQFSFDKLSERLREKAFLNKGIRITIKDER
                     EEPERSHEFYYKGGIAE"
     gene            complement(718..>1463)
                     /locus_tag="VIJ87_16090"
     CDS             complement(718..>1463)
                     /locus_tag="VIJ87_16090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445953.1"
                     /translation="FLDKGISSIRPAYLQTIVDYGKVIKQKNKLLQVANESEFSLEKV
                     ADLVAPWNDQLVKLAVSIHHEREDYVAGLNTQLERQFFDRRDLATRYVSSLEGKGDLS
                     DYEAILRERINLRQAAELASGHSLIGPHRDDLEILLDGREIRVYGSSGQQRSALLLLD
                     LAAISLYNSVSNDQPVFVIDDVDAELDELRIRRLLEYLENRTQTFITTSKRSHVEDFF
                     SRANVYEIGDGQVLSSSAQSPASSIGSLV"
BASE COUNT          345 a          376 c          319 g          423 t
ORIGIN      
        1 ctccgcgatc ccgcctttgt agtagaactc gtgtgaacgt tccggctctt cgcgttcgtc
       61 tttaatcgtg atgcgaatgc ccttgttcag gaaagctttt tcacgcaaac gttccgatag
      121 cttatcgaag ctaaactgcg tctcagtgaa gatctgcccg tcgggtcgaa aggtgatctt
      181 cgttccacgt ctacgagtct tccctgtttg cttcaaaggc gccacaggaa tgccgcgcgc
      241 gtattcttgc tcgtatgtaa gaccgtcgcg ccagatttcc aaatggaggg tctctgaaag
      301 aaagttgacg caagaaacgc caacgccgtg cagtcctccg gacaccttgt aagcgtttga
      361 atcaaacttt ccgcccgcgt gaagcttcgt cattaccact tcggcagccg aacgtttctc
      421 tttcttgatc tcgtcgacag gaattccgcg cccgttatca ataacagtga tcgaattgtc
      481 gagatgaatt gctacttcaa ttgtgtcgca gtatccggct agcgcttcgt caatagaatt
      541 atcaactact tcgtaaacaa tatgatgcag acctatctca ccggtcgatc cgatatacat
      601 cgcgggtcgt ttgcgaaccg cgtctctacc ttccaaaatt gtgatcgatg atgaatcgta
      661 agccatactt ttcttttgag tttctttcgt tccagttgtt atcaatcttt tctcctatca
      721 aaccaatgaa ccaatcgatg aggccggaga ttgagcactg ctactcagca cttgtccgtc
      781 tccgatttca tacacattcg ccctggaaaa gaagtcttcg acgtggctcc gttttgaggt
      841 cgtgatgaaa gtctgggtgc gattctcaag gtattccagt aggcgtctaa tccttagttc
      901 atccagttcc gcgtcgacat cgtctatcac aaaaactggc tgatcatttg acaccgaatt
      961 atacaatgaa atggccgcta agtctaataa taacaaggcg ctacgctgtt gtccggaact
     1021 cccgtaaact cggatttctc ggccgtccaa aagtatctct aagtcgtccc gatgaggacc
     1081 tatcaaggag tgccccgacg ctagttcagc tgcctggcgg aggttaattc tttcccgtag
     1141 gatggcttcg taatcactca aatctccctt accttcaagt gacgaaacat atcgagttgc
     1201 gaggtcgcgt cgatcaaaga attgtcgctc taattgggtg ttgagacctg ctacataatc
     1261 ctctctttcg tggtgaatac tcaccgccag tttcacaagt tgatcgttcc agggtgcgac
     1321 caaatctgcg actttctcaa gactgaattc actctcgttt gcaacttgta gaagtttgtt
     1381 tttctgtttg atgacttttc cgtaatcaac aatcgtttgc agataggctg gcctaatcga
     1441 cgaaatgcct ttgtctagaa acc
//
LOCUS       DATCGC010001688         1504 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_326241, whole genome shotgun sequence.
ACCESSION   DATCGC010001688 DATCGC010000000
VERSION     DATCGC010001688.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1504
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_326241"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..921)
                     /locus_tag="VIJ87_16095"
     CDS             complement(<1..921)
                     /locus_tag="VIJ87_16095"
                     /inference="COORDINATES: protein motif:HMM:NF024748.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008800 - beta-lactamase activity
                     [Evidence IEA];
                     GO_process: GO:0030655 - beta-lactam antibiotic catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEY5445954.1"
                     /translation="MTIKRFSYICLFVLLCISHSNAQQSATKTTVQDLVNNAARTTLE
                     KFADKKLEDKQLSITLIDLRDTQHPVTGSFRGNERVYPASVVKLFYLVAAQRWLEDKK
                     ISESAELTRALRDMIVDSSNEATQYVVDVITHTTAGFELSPKEMEEWQYQRNAVNRYF
                     ASLGYSNINVNQKTFCEDAYGRERVSRGPNGENRNKLTTDATARLMMEVVTGKAVPER
                     TKLMMDLLKREYTGKSSDGDDQGHGFTGIALQGVEGVRLWSKAGWTSTTRHDAAYVEM
                     ADGARFVLVTFTTDHSNDREIIPTVARLVIE"
     gene            1291..>1504
                     /locus_tag="VIJ87_16100"
     CDS             1291..>1504
                     /locus_tag="VIJ87_16100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445955.1"
                     /translation="MQKTTQDGLVRGIRRWDLVAITINGIIGAGIFGLPQKVYALIGT
                     YSLIAFVACALVVALIILCFAEVGSRF"
BASE COUNT          319 a          396 c          371 g          418 t
ORIGIN      
        1 ttcaataaca agtcgtgcga ctgtgggaat gatttctcga tcgttcgagt ggtccgttgt
       61 gaaagtcacc agcacaaatc tggcgccgtc cgccatctca acatacgccg cgtcatgccg
      121 agtcgtactt gtccaacccg ctttcgacca aaggcgtacg ccttcgactc cctgcaacgc
      181 gatacccgta aagccgtgcc cctggtcatc gccgtctgaa ctcttgcctg tatattctcg
      241 cttgagcaaa tccatcatca acttcgttcg ctccggcacc gctttaccgg tcacgacttc
      301 catcatcagg cgggccgtcg cgtctgttgt tagcttgttt cgattttccc cgtttgggcc
      361 acgggacaca cgttcgcgcc cgtaagcgtc ttcgcaaaaa gtcttttggt tgacatttat
      421 gtttgagtaa cctagcgatg cgaagtaacg gttaaccgcg tttcgctgat actgccactc
      481 ttccatttcc ttcggtgaca actcaaagcc ggcagttgtg tgggtaatga cgtcgacaac
      541 atattgagtc gcctcgttcg acgagtcgac gatcatgtcg cgcaacgctc gagttaactc
      601 cgcagactct gaaatctttt tgtcttcgag ccatcgttga gcagccacca ggtagaagag
      661 tttgacgaca ctagccgggt agacgcgttc gtttccgcga aagctgccgg taaccggatg
      721 ttgagtgtcg cggagatcga tcaaagtgat cgacagttgt ttgtcttcga gctttttgtc
      781 ggcaaatttt tccagcgtag ttctggcggc attattgacc agatcctgta ccgtggtctt
      841 ggtcgctgac tgttgcgcgt tgctgtggct aatacagagg agaacaaaaa gacagatgta
      901 ggaaaagcgt ttgattgtca tattcagttg gttctaatgg cggctatgta gtgttctgag
      961 cttgtatcga cagcctatta tgcttcacaa aaccgggcaa gccttaattc ggctcctttg
     1021 ttcatctggc tctctgtgtc ctgcgtaaca aaccactaac tacttgcttt cttagcgagg
     1081 ttttgagacg cgtaattttc gattcgtcgg ggcgatgaag tcagtacctc agcgcttagc
     1141 gtgtggctcg ctaaatttca agaatcgcta tcttcagtca agagccacac gctaccgcgc
     1201 tgaggtactg acttcgtggc cacctaaacg ctagattgta gaaaaaacac ttctttgccg
     1261 ggcaaactaa ttttgctata agcctttcgc gtgcagaaaa caacccagga tggtttggtc
     1321 cgcggcatcc gccgttggga cttagtcgca atcacaatca acggaatcat cggggccggt
     1381 attttcggat tgccacagaa ggtctacgcc ctcatcggca cttacagcct gatcgcgttt
     1441 gtagcttgcg ccctggttgt cgccctcatc attctttgtt tcgctgaagt tggcagtcgc
     1501 ttcg
//
LOCUS       DATCGC010001689         2661 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_124743, whole genome shotgun sequence.
ACCESSION   DATCGC010001689 DATCGC010000000
VERSION     DATCGC010001689.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2661
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124743"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            446..2065
                     /locus_tag="VIJ87_16105"
     CDS             446..2065
                     /locus_tag="VIJ87_16105"
                     /inference="COORDINATES: protein motif:HMM:NF013276.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030599 - pectinesterase activity
                     [Evidence IEA];
                     GO_process: GO:0042545 - cell wall modification [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pectinesterase family protein"
                     /protein_id="HEY5445956.1"
                     /translation="MKQLLTELKISTYPFACQMILVIMLASVVVLGVLGGQKVQAISS
                     SEEAQSSPVLFPANQALMVNPDVQLKLTFNNTPRLGTSGKIRIYDASSDQLIDTLDMS
                     IPPGPTKPVDPAIRAKNYLGFPYPYARTSRPTNANTKPGTPSAGAVPTSNEYQLTIIG
                     GFTDGFHFYPITIDGNTATIHPHHDLLDYGKSYYVQVDPEVLSVSNNHFTGISGKSWR
                     FSTKPKSKAPRPNSTQLTVSVDGTGDFNTVQGALDFVPDHSQKRITIKVRNGIYEEIV
                     YIRNKDNLTLVGESQEKTIVRYANNEVFNPHPANIRTNPAPGTFPSRRAAVAIDNCND
                     IHIVNMTMQTTAFGQAEGLLITGDRNILSHTTVIGSGDALQANGRIYMVDSTILGGGD
                     TILGRGTLFCERCTIKSNSVLMWPRNPKEVHGNVFLDSTFIGTREPTTIARSPQNEAF
                     SYPYAEVVLLNTKLTNIAPEGWSTADKGGNVHFWEYNSLNADGSPVDVSKRVSWSRQL
                     DKIKDAKVIADYSSPEFVLAGWKPKLEVRSK"
     gene            2090..>2661
                     /locus_tag="VIJ87_16110"
     CDS             2090..>2661
                     /locus_tag="VIJ87_16110"
                     /inference="COORDINATES: protein motif:HMM:NF021640.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061810 - NAD glycohydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIR domain-containing protein"
                     /protein_id="HEY5445957.1"
                     /translation="MNKPRIFLGSSGKQEKLLQALTRGLEDVAHVEPWTTSFNPGTTT
                     LERLLELAHEVDFAAFVFAQDDWTTQDPKSSSASSESGQASPRDNVVFEAGLFGGTLG
                     MRRTFILHAQGAKLPSDLLGLTCIRFEAATPAAVRIVNQKLRTAIESVGSVTRIEGCW
                     WQFSLTERTAKEPSAVSLLKISRDRDGALEL"
BASE COUNT          681 a          731 c          683 g          566 t
ORIGIN      
        1 ggggcagtag cccgactgtc aaggagggct ccagatccct tcgatgagcc ctccttgaca
       61 gtcgggctac ggcccagaag gttgccttgc gtcgctactg tggatcaaaa gatattcacc
      121 tgctataaac atttcgtttc cgtaatatcc cacagagttg cggcgaactc gccgtttctt
      181 gttcgcagtt gagtgggcga gcgcgaagca atcgatgcac ggcagtaaat cgccaaacgg
      241 tgttcacagt tttctctgga cagaatcaag gcgggaaacc ttcagaaagc gatccccgcc
      301 tgagcggagt gcacaaggtc ccttcaaccc tatgctgccg ctggcccatc taacatttaa
      361 agtcacgttg agtcagtacg ctaacggacg ggccaatggg tcagtcttca agctttgtta
      421 cctttatcga taacgagtca atcctatgaa gcagcttctg actgaactaa aaatctccac
      481 ttacccattc gcttgccaaa tgattctggt aatcatgctg gcgtctgttg tggtcctcgg
      541 tgtcttaggg ggacaaaagg tgcaagcgat ttcttcaagc gaagaagcac agagtagtcc
      601 agtcctgttc cccgccaatc aggcgctgat ggtaaacccc gatgtgcaac tgaagctgac
      661 cttcaacaac acaccgcgtc tcgggacatc gggaaagatc cggatctacg atgcctcaag
      721 tgatcaactc atagatacgc tcgacatgag cattccacct gggccaacaa agcctgtcga
      781 tccggcaatc agggcaaaga attacctcgg cttcccttac ccgtatgctc gtacatcacg
      841 acccactaac gcgaacacca aacctggaac tccatccgca ggcgcagtgc cgacctcgaa
      901 cgagtatcaa ctaactatca tcggcggctt caccgacggg ttccacttct atccgatcac
      961 gatcgacggg aataccgcga cgatacatcc gcatcacgat ctgctcgact acggaaagag
     1021 ctactacgtt caggttgatc ccgaagtact cagcgtttcg aataatcatt tcacgggtat
     1081 cagcggcaag agttggcgct tcagtacgaa accaaagtcg aaggcccctc gtccgaacag
     1141 cacacagctg accgtcagcg tcgacggcac tggagatttc aacacggtgc aaggcgcgct
     1201 ggacttcgtg cctgatcatt cgcagaaacg aatcacgatc aaagtgcgca acgggatcta
     1261 tgaagagatc gtgtatatcc gcaacaaaga caatctcacc ctagtgggtg agagccagga
     1321 aaaaacgatc gttcgttatg cgaacaacga agtgttcaat ccgcatccag caaacattcg
     1381 tactaatcca gcgccaggca catttccttc tcgtcgcgct gccgtggcca tcgacaattg
     1441 caacgacata cacatcgtta atatgacgat gcagaccacc gcattcggtc aggccgaagg
     1501 gctattgatc accggtgatc gcaacattct ctcgcacacg acagtgattg gcagtggtga
     1561 tgcactacaa gcgaatggac ggatctatat ggtcgacagc accatacttg gcgggggcga
     1621 tacgattctc ggccgcggta cgttgttctg cgaacgctgc accatcaaat caaacagcgt
     1681 gttgatgtgg ccgcgtaacc ctaaggaagt ccacggcaat gtttttctcg acagcacgtt
     1741 tattggaact agagagccga caacgattgc gcgttcacca caaaacgagg cgttcagtta
     1801 tccttacgct gaagtcgtgt tactcaacac aaaactgacc aacatcgcac ccgaaggttg
     1861 gagcaccgct gataaaggcg gcaatgttca cttctgggaa tacaacagcc ttaatgcaga
     1921 cggatcgcca gtggatgtca gtaaaagagt ttcctggtcg cggcaactcg acaagataaa
     1981 ggacgcgaaa gtgatcgctg actacagtag ccccgagttt gtgctggcag gttggaagcc
     2041 gaagctcgaa gtccggtcga agtgatcgcc tgctaactgg agaaattgaa tgaacaagcc
     2101 tcgcatcttc ctgggatcat cggggaaaca ggagaagcta ctgcaggcat tgacacgcgg
     2161 gctggaagac gtcgcgcatg tagaaccctg gaccacttct ttcaatcccg gaactaccac
     2221 cctggaacgt ctccttgagc ttgcacacga ggtcgacttt gccgcgtttg tgttcgctca
     2281 ggacgactgg acgacacaag acccaaaatc atcgtcggcg tcgtcggagt ccggtcaagc
     2341 ttcaccgcga gacaatgtcg ttttcgaagc cgggctattc ggtggcacac tgggaatgcg
     2401 cagaacgttt atcctacatg cgcagggagc caagcttccc agcgatcttc ttggcctcac
     2461 atgcatacgt ttcgaagcgg ccacacctgc cgcggttcgc atcgtaaatc agaaactccg
     2521 gaccgcgatc gagagtgtgg gaagcgtcac tcgcatcgaa gggtgttggt ggcagttttc
     2581 gttgactgag cgcaccgcga aagagccgtc ggcagtgagc ctgctaaaga tttcgcgtga
     2641 tcgcgacgga gcactggaac t
//
LOCUS       DATCGC010001690         1103 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_192058, whole genome shotgun sequence.
ACCESSION   DATCGC010001690 DATCGC010000000
VERSION     DATCGC010001690.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1103)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1103)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1103
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192058"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..871
                     /locus_tag="VIJ87_16115"
     CDS             <1..871
                     /locus_tag="VIJ87_16115"
                     /inference="COORDINATES: protein motif:HMM:NF013300.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004560 - alpha-L-fucosidase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-L-fucosidase"
                     /protein_id="HEY5445958.1"
                     /translation="AEGLRFGFYYSLMDWHHPDGARCLKDEAARRRFVDYIHGQVKEL
                     MTNYGTVDILWYDVPWPLDAKGWESVEMNTMVRKLQPDIIINNRSKIPEDFDTPEQRI
                     EASANRPWESCMTLNDSWGYHISDRNWKSPTTVIRNLITCARDGGNYLLNIGPTEDGS
                     IPPESAQILSTVGDWMSKHDETIRLSDNCQPRRGNYVSFTRKGNTLFAHVHYWPGETV
                     VLANFLNKVSSVKMHGSNTPVKFEQDDYRIRLVGLPAKAPELVTTFALEGDSEPRQNH
                     EGKRAEKPRETRY"
BASE COUNT          273 a          252 c          317 g          261 t
ORIGIN      
        1 cgcagaaggt ttgcggtttg gtttctacta ctcgttaatg gattggcatc atccggacgg
       61 tgcccgttgt ttgaaagatg aggcagctcg tcgtcgcttt gtcgattaca ttcacggaca
      121 ggtgaaggag ttgatgacca actacggcac ggtcgacatt ctctggtacg acgttccctg
      181 gccgcttgac gcgaaaggct gggagtcagt tgagatgaat acgatggtgc gaaagcttca
      241 gccggatatc atcatcaaca atcgttcaaa gatacctgag gactttgata caccggagca
      301 acgtatcgaa gcgtcggcga accgaccatg ggaatcgtgt atgaccttga atgatagttg
      361 gggttaccac atctcggatc ggaactggaa aagcccgacg acagtgattc gaaatctcat
      421 cacctgcgcg cgcgatggag gaaattacct attgaacatt gggccgacgg aagatggttc
      481 gattccgccg gagtcagccc agatcctttc gacggttggt gattggatga gtaagcacga
      541 tgagaccatc cgtctttccg acaactgtca gccgcgtcgt ggtaactacg ttagcttcac
      601 gcggaaggga aatactttgt tcgcccacgt tcactactgg cccggagaaa cagtggttct
      661 cgcaaacttt ctcaacaagg tttcctcggt aaagatgcac ggcagtaata ctccggtgaa
      721 gtttgagcag gatgattatc gaattcgtct ggtcggcttg ccggcgaagg caccggagct
      781 ggtgacgacg tttgccctcg aaggcgacag cgagccgcga caaaaccacg aagggaagag
      841 ggcggagaag ccacgggaga cgaggtacta aatgcttgtg ctttgagctt ggagcttagt
      901 gctttgttcg tgtttccgag ttgcgtgttt cctgtgaggt ttaaggttag cggagaaaat
      961 aggcaaagta caaagatcaa agtaccaagc actgattcgg actaccttaa ctgccacaaa
     1021 tgacgatcat agattcccac caacacttct ggcaggtcgg tcggttcgac tatccgtgga
     1081 tgagtagctc agtggaggtg ttg
//
LOCUS       DATCGC010001691         2698 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_156145, whole genome shotgun sequence.
ACCESSION   DATCGC010001691 DATCGC010000000
VERSION     DATCGC010001691.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2698)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2698)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2698
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156145"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1732)
                     /locus_tag="VIJ87_16120"
     CDS             complement(<1..1732)
                     /locus_tag="VIJ87_16120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445959.1"
                     /translation="MTRINRRKFLALTSTSLVSLTTARSLSASFPNYSPSFRQAVTPT
                     KTRTCFLDVCAPLLIQDSSLGLESEIVLTSDNFIGADGHQYGQDATEYEIYLYDSTGR
                     LFGENGGATHLVVPAMRTTVIAVSDIVGPNVNFWGGMRIRLKPKTRIPTHPSDLFSSA
                     FVRWKTKDSFANVHANPDPLQWQRADSFFYSMPFPPLREYECLYSLFNPYAETSNGTV
                     TLYDQFGSTLKELPYELAGHCSALVDLRKGTFAAGINECIQTKGHSHASKIALPGGES
                     GGTIAVTNQKGSVKNFGYLLIKQSHSRRFTVEHPIHQQSYHPLPVVEPFDALGRLRAK
                     NILYTPLVFNSKKLGGVTLQSRFHLSSGAPVEEALWLSPFITDENGNVVWQMGQGALV
                     PKSISRKQIEHDVIKLRGQQSCILEVSDLALAKSFSGGLSLAISPLSNHTLMKVELRV
                     LEWDSPAFTHFRPGLASARAYQKPQHRSGLATDYIAAGAKIEAKGSRISRDEIIAVIN
                     IDDRNLAGNPTLELFGATGLVTRVPLGIVPAFSCRHYLLSELLSGKINLNDLSLRLVD
                     ERATLLMSVVH"
     gene            complement(1816..>2698)
                     /locus_tag="VIJ87_16125"
     CDS             complement(1816..>2698)
                     /locus_tag="VIJ87_16125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445960.1"
                     /translation="FIVDNGNQTYYDALQLEVRRRLSAGLLIQGSYTFSKSQSNFFAS
                     SSSVFTNYFSIRRGDLSKNIGPYDVTHSFKTNFIYELPFGKGQRFMSGVGGLVNGFVG
                     GWGFNGSIRVQSGNPVGFGNVQLVGMDRKDLQKLIEVRKGPSSVFYLPEDVILNTARA
                     FAVTYNAAGQAVYTNGAPSGRYIAPAGTGNCIQAYTGQCGFANLVIKGPRFVRPDLSL
                     VKKIRFSENNNVELRAEFLNAFNAQNFLIGSAANDLNTVAGSSTFSGVISNAYQDTST
                     TNDPGGRLIQLVVRWNF"
BASE COUNT          687 a          669 c          701 g          641 t
ORIGIN      
        1 gatgtacgac tgacatcaga agagttgccc tctcgtcgac tagtcgaagg ctcaggtcgt
       61 tcaagttgat ctttccagat agcaattcgg aaagcaagta gtgacgacaa ctaaatgccg
      121 gcacgatacc cagaggaacc cgagtcacca aaccagtcgc tccgaacagt tccagcgtcg
      181 gatttcctgc caagtttcga tcgtctatgt tgatgaccgc aataatctca tcgcgcgaga
      241 ttcgacttcc ttttgcctca atcttcgccc ctgcagcaat gtaatcagtt gcaagccccg
      301 aacgatgttg aggcttttgg taggcgcgag cagacgcgag tccgggtcta aaatgagtga
      361 aggctggcga atcccattcg agaaccctca gttcaacctt catcaaagtg tgatttgata
      421 agggcgagat cgcgagtgag agcccacctg aaaaactttt cgccaacgcc aaatcggaga
      481 cctctaggat gcaactctgt tgccccctga gcttgataac gtcgtgttct atctgcttac
      541 gcgaaatcga ttttggaaca agagcgcctt gtcccatttg ccaaacaaca tttccgtttt
      601 cgtcggtgat gaatggactc agccacaaag cttcctcaac cggagcacca gaactcaaat
      661 ggaaccgcga ctgaagtgtc accccaccta gcttcttact attaaagacc agtggtgtgt
      721 aaagaatgtt tttggcccgc aagcgtccga gagcgtcaaa cggttcgaca accggaagcg
      781 gatgatatga ctgttggtgg atcggatgct caacggtgaa gcgcctactg tgcgattgtt
      841 tgatcaatag atatccgaaa ttcttcaccg atcctttttg attcgttact gctatggtgc
      901 cgcccgattc accacctgga agggcaatct tgctcgcgtg cgagtgacct ttggtttgta
      961 tgcactcgtt tatcccggcc gcgaaagttc ctttgcgcaa gtcgacaagc gcagagcaat
     1021 gcccagccaa ctcgtaaggc aactctttta acgtggagcc gaattgatca tagagagtca
     1081 ccgtaccgtt actagtttcc gcgtaagggt tgaatagact gtaaaggcat tcgtactccc
     1141 gaagcggagg aaacggcatc gaatagaaaa aactgtcggc tcgctgccac tgcaatggat
     1201 ctgggttggc gtgcacattg gcaaatgagt ctttggtttt ccagcgcaca aaagccgaac
     1261 tgaaaagatc gcttggatga gtgggaatcc gcgttttggg tttgagtctg attcgcatcc
     1321 cgccccaaaa gttcacattg gggccaacaa tgtcggacac agcaataact gtcgttcgca
     1381 ttgcgggaac aacgagatgc gtggcgcctc cattctctcc aaatagccga cccgtcgagt
     1441 cgtacaggta gatctcgtac tctgttgcgt cctgaccgta ttgatggccg tcggcgccga
     1501 tgaagttatc ggaagtaaga acaatttctg attctagtcc aagacttgaa tcctggatga
     1561 ggagtggcgc acagacatca agaaagcaag tgcgggtctt agttggggta acagcttggc
     1621 gaaacgaggg ggagtaatta ggaaagctcg cagagagtga ccgcgctgtc gttaaagaaa
     1681 cgagcgaggt tgaagttaga gcaaggaatt tgcgccgatt tattctggtc acggcagcac
     1741 tgaccctggg gaggttagag aaatgaggag agcaggctag ccgctctcct cacgtctagg
     1801 ttgacaggtc caggcttaga aattccacct gacgaccaac tggatcaagc gtccacccgg
     1861 atcgtttgtc gtcgacgtat cctggtaggc gtttgagata actccactaa aggtcgagct
     1921 gccagcgacg gtattaaggt cgtttgcagc actaccgata aggaagttct gtgcgttgaa
     1981 agcattaaga aactcagccc gcagttccac gttattgttc tccgagaacc ggatcttctt
     2041 aacaagactc aggtccggac gaacaaatct tggtcctttg ataactaagt ttgcgaaacc
     2101 gcattggccg gtgtaggcct gaatgcaatt tccggttcct gccggcgcga tgtatctgcc
     2161 gctgggagcg ccattcgtgt aaacggcttg gccagctgca ttgtaggtaa cagcgaaggc
     2221 acgtgccgtg ttgagaatga catcttctgg caaatagaac acagagctgg gccctttacg
     2281 aacttcaatc aatttctgca agtcttttcg gtccatgccg accaattgaa cgttgccgaa
     2341 accaactggg ttaccgctct gaacgcggat cgaaccgttg aagccccagc caccaacaaa
     2401 accattcacc aagccgccga cgccactcat gaatctctgg cctttaccaa acggcagttc
     2461 gtaaatgaag ttggttttga agctgtgggt cacgtcatat ggaccaatgt tcttgctcaa
     2521 gtcgccgcgg cgaatcgaga agtagttggt aaatacagac gagctgctgg cgaagaagtt
     2581 cgactgtgac ttcgagaagg tatagctgcc ctgaatgagc aggcccgctg aaagtcgacg
     2641 tcgcacctcg agttggagag catcgtagta agtctgattt ccattatcta cgataaat
//
LOCUS       DATCGC010001692         1657 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_326310, whole genome shotgun sequence.
ACCESSION   DATCGC010001692 DATCGC010000000
VERSION     DATCGC010001692.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1657
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_326310"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..728
                     /locus_tag="VIJ87_16130"
     CDS             <1..728
                     /locus_tag="VIJ87_16130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445961.1"
                     /translation="EAVAASPNSGVNTLTGEGLAEVLEGVQVVVDVSNSPSFEDAAVL
                     NFFETSTRNLLSYEAVARVGHHVALSVVGSERLPESGYLRAKIAQENLIKEGSIPYSI
                     IHATQFFEFVNRIADEATSGNSVHLPPVLFQPIAADDVATAVCEVATGSPLNGVVEVG
                     GPEQFRFDELIRQALSARNDPREVIADPHAKYFGTELSERSLVPDNDAQVGETHFEDW
                     VSRSTSQVRATTLQRATAASQKQ"
     gene            797..1633
                     /locus_tag="VIJ87_16135"
     CDS             797..1633
                     /locus_tag="VIJ87_16135"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY5445962.1"
                     /translation="MSTITTKDGTQIYYKDWGTGQPIVFSHGWPLTADAFEDQMYFLA
                     SNGYRCIAHDRRGHGRSSQPWNGNDMDTYADDLAALVEALDLKKAIHVGHSTGGGEVA
                     RYVGRYGTKRVAKVVLISAIPPLLVKTEANPNGLPKEAIDQLLGGIRADRAQFFKDFS
                     IPFYGFNRPGAKVSEGLRDSFVLQSLLAGFPNVYAFTQSADFTEDLKNFDVPTLIMHG
                     DDDQVVPIAITSLVSSKIVKGATLKVYPGLPHGMCSTHKDLINADLLEFIKKAQTSSQ
                     TA"
BASE COUNT          392 a          442 c          452 g          371 t
ORIGIN      
        1 atgaggctgt agcggcgtct cccaattcag gtgttaacac gcttaccggc gagggattgg
       61 ccgaagtact cgagggagtg caggtcgttg tggatgtctc gaattcaccg tcgtttgagg
      121 atgctgcggt cctaaacttc ttcgagacgt ccacacgcaa tctcctctcc tatgaagcgg
      181 ttgctcgtgt gggccatcat gtagcgctct cagtcgttgg gagcgagcgt ttgcctgaga
      241 gcggttatct tcgagcaaag atcgcgcagg agaacctgat caaggaaggt tcgatcccct
      301 actcaatcat tcatgcgact caattcttcg agttcgtaaa ccgcatcgct gacgaagcta
      361 ccagtggaaa cagtgttcac cttccgcccg tgctattcca gcctatagcc gccgacgatg
      421 ttgccacggc ggtttgcgaa gtggctactg gttcaccttt aaatggcgta gttgaagtgg
      481 gtggaccaga acagttccgt ttcgacgaac tgatccgaca agcgctaagc gcacgcaacg
      541 atccacgcga ggtaatcgct gatccacacg caaaatactt cggcaccgag ttgagcgagc
      601 gcagccttgt gccggacaat gatgcgcaag ttggggagac gcacttcgaa gactgggtca
      661 gccggtccac aagtcaggtc cgggccacga cgctgcaacg cgcaaccgct gcttctcaaa
      721 agcaatagcc gttaagccgg cagcaattgt gacaacttaa accttcgaga acgcacaaca
      781 gaaaggagag agtgttatga gcactatcac aacgaaggat ggaacgcaga tttactataa
      841 ggactggggc accggacaac cgattgtctt cagtcacggc tggccactga cggcggacgc
      901 ctttgaggac cagatgtact tccttgcctc gaatggctat cgctgcattg cccacgatcg
      961 ccgtggccat ggccgctcaa gtcaaccttg gaacggcaac gacatggaca cctatgccga
     1021 tgaccttgcg gcactcgttg aggcgcttga tcttaagaaa gcaattcatg tcggacactc
     1081 gaccggtggc ggcgaagtag cccgctatgt cggacgctac ggtacaaagc gcgtggctaa
     1141 ggtggtgctg attagtgcga tcccaccatt gttggtgaag actgaagcaa atcccaatgg
     1201 gcttcctaag gaggcgatcg atcagttgct cggcggcata cgggccgacc gcgcgcagtt
     1261 tttcaaagac tttagcatcc cgttctacgg cttcaaccgg ccaggagcaa aagtctctga
     1321 aggcttgcgc gatagtttcg ttctgcagtc gttgttagct ggtttcccaa acgtctacgc
     1381 tttcacacaa tcggctgact tcactgaaga tctcaagaat ttcgacgttc cgacactcat
     1441 catgcatggc gatgatgatc aggtcgtacc gattgctatt acttcgcttg tgtcgtccaa
     1501 gattgtgaag ggcgccacac tcaaggtgta cccaggatta ccgcatggta tgtgctcgac
     1561 tcacaaggat ctcatcaatg ctgatttgct cgagttcata aagaaagctc agacaagctc
     1621 tcaaacggcc tgagttcgca acgcggcggc agatggc
//
LOCUS       DATCGC010001693         1513 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_458082, whole genome shotgun sequence.
ACCESSION   DATCGC010001693 DATCGC010000000
VERSION     DATCGC010001693.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1513
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_458082"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1513
                     /locus_tag="VIJ87_16140"
     CDS             <1..>1513
                     /locus_tag="VIJ87_16140"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M1 family aminopeptidase"
                     /protein_id="HEY5445963.1"
                     /translation="DVHYNLDLRTLADLYMPKREGFFWAFPGGGRYDKLAFVVDPLSR
                     SDIAPEQVALYSFSETEGGIWTSFHLADDYKQGGDLNAQDHRVFDITRHEIDGTIRGT
                     RLIAADRVTLTTLMPTRILPFELYRTLRVAHVKDDQGRELSFVQEGKDDDADFGVILP
                     EPIETGKSIKLTIDYEGEDAIKDSGGGNFILIPRTSWYPNNGTQDFGDRAIVDLTFHY
                     PKDYIFVGTGALAGPEQIEGDLKVAKWTSGSTELAVTGFNYGKFIKKELMDKETGMGL
                     EFFANKEVPNEIKDLQLMLEELGRDKWHMTGVTGNITTASMADAALTDTQNATRIYSA
                     YFGKLPYSRIAITQQPAFNFGQAWPTLIYMPYTAFIDTTQRTQLMGAQGGSDSFWRYV
                     GPHETAHQWWGHILGWDSYRDQWMSEGFAEFSTSLFVQYVRKDMAKFNDFWDNQRKLI
                     TEATPFTKGHKPYTVGPVTQGYRLDSGKTPNITRAMIYPKGAYILHMLRMMMFD"
BASE COUNT          400 a          367 c          390 g          356 t
ORIGIN      
        1 agacgttcat tacaatctcg acctgcgaac attggccgat ctatacatgc cgaaacgaga
       61 aggcttcttc tgggcgtttc ccggaggggg gcgttacgac aaactggcct ttgtcgttga
      121 tccgcttagc agatcagata tcgctcccga gcaggtggcc ctgtatagct tcagtgaaac
      181 tgaaggtggc atttggacct cgttccatct tgcggacgac tataagcaag gtggtgatct
      241 gaatgcccag gatcatcgtg ttttcgatat cactcgacac gaaatcgacg gcacgattcg
      301 cggtactcga ctaatcgctg cagatcgcgt aacgctgacg acgctgatgc ctacacggat
      361 tcttccgttc gagctctatc gaacgttgcg tgttgcccac gttaaagatg atcaagggcg
      421 agagctcagc tttgttcaag aagggaagga tgacgacgca gacttcggtg tgattctccc
      481 tgagccaatt gaaacgggaa aatcgatcaa gctcacgatt gattacgaag gtgaagatgc
      541 gatcaaagac tctggtggtg ggaacttcat tctgatacca cgtacttcct ggtatccaaa
      601 caacggcacc caggattttg gcgatcgcgc tattgtcgac ctgacgtttc actatcccaa
      661 agactacatc tttgtgggca ctggtgctct ggcgggtcct gaacaaatcg agggggattt
      721 gaaagttgca aaatggacaa gcggatcaac ggagctagct gtgaccggtt tcaattatgg
      781 aaaatttatc aaaaaggaac tgatggacaa ggaaaccgga atgggtctcg agttttttgc
      841 caacaaggaa gtgcccaacg agataaaaga tcttcagttg atgctcgaag aacttgggcg
      901 cgacaaatgg catatgaccg gagtcacggg aaacattacg accgcttcga tggcggacgc
      961 ggccctgacg gacacacaaa acgcgactcg tatttactca gcgtacttcg gcaagctccc
     1021 ttattcacgc atcgctatca ctcagcaacc ggcttttaac ttcggtcagg catggccaac
     1081 gcttatctac atgccttaca cggcattcat cgataccact caacgcacgc aactgatggg
     1141 agcgcaagga ggctcagata gtttttggcg ctatgtcggt ccgcacgaaa ctgctcatca
     1201 atggtgggga cacattcttg gctgggacag ttatcgcgat cagtggatga gcgaaggatt
     1261 cgctgaattc tcaacttcgc tcttcgtgca atatgtgcga aaggacatgg cgaagttcaa
     1321 cgacttctgg gacaaccaaa gaaagttaat tacagaagct acaccgttca ccaagggcca
     1381 taaaccttac actgtgggtc cagttacaca aggttatcgc ctagacagcg ggaaaacccc
     1441 gaacatcacg cgggcgatga tctatccgaa aggcgcctat attcttcata tgttgcgcat
     1501 gatgatgttt gat
//
LOCUS       DATCGC010001694         1750 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_490244, whole genome shotgun sequence.
ACCESSION   DATCGC010001694 DATCGC010000000
VERSION     DATCGC010001694.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1750)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1750)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1750
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_490244"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            223..>1750
                     /locus_tag="VIJ87_16145"
     CDS             223..>1750
                     /locus_tag="VIJ87_16145"
                     /inference="COORDINATES: protein motif:HMM:NF024863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDSL-type esterase/lipase family protein"
                     /protein_id="HEY5445964.1"
                     /translation="MKNNVFKEIAKGLLVTVVGFVILEALLRIAYFSRNWMVTEIPVT
                     YMFGDDHGPIPPWLDGLRILEPDKVLIWKNRPNIQRRYIDVFIPAHSEREKTAILRRF
                     LPQPPDSLKGNPTWEISLNSEGFRDVEIRRQKPSSVFRIICLGDSWTFGWNVGSTQSY
                     PRQLQYLLQREFPEANFEIFNLGVAGYSSIQGLRLLKTRVLDLNPDVVVVALAMNEPH
                     MAGVDDKHASRGEESINLVQRLNSLLNKSEFFKLLRYWALLLTWKPRSISEYLEDKSY
                     NATWRQQVTGNDFDKFEPWTRDSLRDYDRHHREMISVARSRNISIVLLYNEFWKDSPY
                     LKVLQRIARDERVPLVDTSALIAGAQKSIEEELEKKLDLQPRKPQRGNAHGEIEVVFR
                     LFADKWSVPKAMYIVGNHPKLGNLVPNKVAMYDNGTHGDQMAGDHVWSYSATFAPGTK
                     LSYIYTDSGEEGKWEGLDVPHIRSFTVEAKNGEQKLYRPIESFGKIYMHADPWHTNAV
                     G"
BASE COUNT          465 a          392 c          471 g          422 t
ORIGIN      
        1 actctttaga gcaaccgttt cctgcttgag gggctctctc caagtgcaaa atgcccgcta
       61 acattccggg catagcgact aaggtgccac aatctaagtt atatattggt cttttttctg
      121 atcaccgtgt acacattgat gttaaacaat acggaccgcc catcagcgat tctatgggcc
      181 agtgcagcgg cggcaggggt ggcctggttt ccttgataat gcatgaagaa caacgtcttt
      241 aaagagattg ctaaaggtct gctcgtgaca gtagtaggct tcgtgatcct ggaagcactg
      301 ctaaggatcg cgtatttcag ccggaactgg atggtaactg aaatcccggt aacctatatg
      361 tttggcgacg accacggccc aattcctcct tggctggatg gtcttcggat cctagagcca
      421 gataaggtct tgatctggaa gaatcgacca aacatccaga ggaggtacat cgatgttttc
      481 atccccgctc atagcgagcg agagaaaacg gcgatcctcc gccggttcct tccccagccc
      541 cccgattcgc taaaagggaa tccaacgtgg gaaatttcgc ttaactcgga aggattcagg
      601 gatgtggaga ttcgcaggca aaaaccgtcg tccgtctttc ggataatttg cctgggggat
      661 tcgtggacgt ttggctggaa cgtcggttcg actcagagct atcctcggca gttgcagtat
      721 ttgcttcaac gggagtttcc ggaagcgaat ttcgagatat tcaatttagg agtggcaggc
      781 tattcgtcca ttcaagggtt gaggctgcta aagacaagag tgctcgatct gaatcctgat
      841 gttgtagtcg ttgcccttgc catgaacgag ccccacatgg cgggtgtcga tgataaacat
      901 gcgtctcgag gtgaagaatc tattaacttg gtgcagaggc tgaacagtct gttgaacaaa
      961 agcgagttct tcaaacttct gcgctactgg gccctgctgt taacatggaa gcctaggtca
     1021 attagcgaat atctcgagga taagtcgtat aacgcgacat ggagacagca ggtgactggt
     1081 aatgattttg ataaattcga accgtggacg agggactcac tgagagacta tgatagacat
     1141 caccgggaga tgattagtgt agccaggagc cgcaatatca gtattgtcct gctgtacaac
     1201 gagttctgga aggacagccc ttatcttaag gtgctacaaa gaattgcgag ggacgagcgc
     1261 gtcccgctcg tggataccag tgctttgatc gcaggggcac aaaagagtat cgaggaagaa
     1321 ttagagaaga aattagacct tcagcctcgt aaacctcaaa gaggcaacgc tcatggagaa
     1381 atcgaagttg tctttcggct gtttgcggac aaatggtctg tgccaaaggc gatgtacatt
     1441 gtcggaaacc atccgaagct gggaaattta gtgcccaaca aggtcgccat gtatgacaat
     1501 ggaacacatg gggatcaaat ggcgggagac cacgtctggt cttattcagc aacatttgcg
     1561 ccagggacta agctctctta tatctatacc gacagtggcg aagaggggaa atgggaaggc
     1621 ttagatgttc cacatattag gagtttcacg gtcgaagcta aaaacggcga gcaaaagctt
     1681 tacagaccca tcgagtcctt cgggaaaatt tacatgcacg ctgatccatg gcatacgaac
     1741 gccgtcgggt
//
LOCUS       DATCGC010001695         2099 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_58197, whole genome shotgun sequence.
ACCESSION   DATCGC010001695 DATCGC010000000
VERSION     DATCGC010001695.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2099)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2099)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2099
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58197"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..525
                     /locus_tag="VIJ87_16150"
     CDS             <1..525
                     /locus_tag="VIJ87_16150"
                     /inference="COORDINATES: protein motif:HMM:NF014173.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEY5445965.1"
                     /translation="AVAVHVMTLMAWSGEEPLKSDQVADSVNTNPVVIRRMLCDLAEA
                     GLVVSQTGSLGGSRLAGDPSKTTLLDIYQALEYKGVFSLNRQRPSRECPVGVNIETVL
                     GDVMSEVDSAVEAVLAKITLTDVVQRLKPCVAAPTNKTIDNTQKKKFRRERITLPELR
                     AGAKSRRVKALRTA"
     gene            551..>2099
                     /locus_tag="VIJ87_16155"
     CDS             551..>2099
                     /locus_tag="VIJ87_16155"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY5445966.1"
                     /translation="MARLEKDDSGIDLMNKGEFVNLSEELTDDAVSIEDIDEVLQTLE
                     RATSVETETEEPLIEETSSSVESEEGMSEEVELDLSAGEMDKTSDPIRVYMREMGVVP
                     LLTREQEVSIAKRIERGQKRAEKAIARSPIAVVELFRIGDELAEGKLNIRDVVAFSDQ
                     METEEHEDRSEEYLQWTIEGLQNIRNLYKRGLKEFEKFAAEQKLTRGKRSKKFLRYRR
                     KLGRTRLEIAQEIRGLHMKEAARQRLIASIGAVHKETRTLERDIEANNEKLKRKGLKL
                     DKQKEFKRNIANDKKRLKEIELEHHLTPLEIKRAHQMIVISEAQTAQAKHELTEANLR
                     LVVSIAKKYQNRGLQFLDLIQEGNLGLMKGVDKFDWRRGYKFSTYATWWIRQAITRAI
                     ADQARTIRIPVHMIEVINKLKNTSRELVRELGREPTTEEIAKKMDTSVDKVRKARKLM
                     QDPISLETPIGENGDSQLGDLIEDKSSESPAARVITSNLREIAGDVLQTLSPREERVI
                     RLRFGLDN"
BASE COUNT          601 a          459 c          589 g          450 t
ORIGIN      
        1 gccgtggcgg ttcacgtcat gaccctgatg gcatggtcag gtgaagaacc gctcaaatca
       61 gatcaggtag cagacagcgt aaacaccaat ccggtggtta tcaggcgcat gctctgcgat
      121 cttgccgagg ctggtctcgt cgtttctcaa acgggttcgt tgggtggatc acgtttggct
      181 ggcgatccat cgaagacaac gctcctcgat atttatcagg ctctggaata taagggcgtc
      241 ttttcgctaa atcgacagcg tccaagtcgt gaatgtccag taggcgtaaa tatcgagact
      301 gttttgggtg atgtgatgtc tgaggtggat tccgcggtcg aagccgtgct tgcgaagata
      361 actcttactg atgttgttca gagattgaaa ccttgtgtag ctgctccgac gaataaaact
      421 atcgacaaca cacaaaagaa gaaattcagg cgggagcgga ttactttgcc cgagttgcgc
      481 gcaggggcaa agagccgaag agtcaaagca ctccgcactg cctaactatc gcgagaaagg
      541 aatactcaat ttggccaggc ttgaaaaaga tgacagtggc atcgacttga tgaacaaggg
      601 cgagttcgtc aacctcagcg aagagctgac tgacgatgca gtctcgattg aagatatcga
      661 tgaggtttta cagacactcg aacgcgctac cagtgtagaa actgaaacag aagagccgtt
      721 gatcgaggag acatcctcgt ccgtggagtc tgaagaaggt atgagcgaag aggtggagct
      781 cgatctttcg gcaggcgaaa tggataagac ttcggacccc attcgcgtgt atatgcgcga
      841 aatgggagtt gtgcctctac ttacgcgcga gcaggaagtt tcgatcgcga aacgaattga
      901 acgcggtcag aagcgggcag aaaaagcgat tgcccggtca ccaatcgcag tggttgagct
      961 gttcaggatt ggcgatgagt tggctgaagg taagctcaac attcgtgacg tcgtagcttt
     1021 ttcggatcaa atggagacgg aagagcacga agaccggagt gaagagtatc tccagtggac
     1081 aattgaagga ctacagaata tccgcaacct ctacaagaga ggcttgaaag agtttgaaaa
     1141 gtttgctgcc gaacaaaaac tgactcgagg aaagcgttcg aagaagtttt tgcgatatcg
     1201 aagaaagctt gggcgcaccc gacttgaaat tgcgcaggaa attcgtggct tgcacatgaa
     1261 ggaagcggcg cgtcaacgtt tgattgcatc aataggcgct gttcacaaag aaacacgaac
     1321 actggaacgc gatatcgaag ccaacaacga gaagctcaaa cgaaaaggtc tgaagctaga
     1381 caaacaaaaa gagttcaagc ggaatattgc caacgacaaa aaacgtctca aggaaattga
     1441 gcttgaacat caccttacgc cactcgagat caaacgtgca caccagatga tcgtgattag
     1501 tgaggctcaa acggctcaag cgaagcatga gttgactgaa gctaatctgc gactcgtcgt
     1561 ttcgattgcc aagaagtatc agaaccgggg actacagttt ctagacctga tccaggaagg
     1621 caatctcggg ttgatgaaag gtgtagataa gtttgactgg agacgtggct acaagttttc
     1681 gacctacgcc acgtggtgga ttcgccaggc gatcactcgg gcaatcgctg atcaggctcg
     1741 aacgattcgc atcccggttc acatgattga agtgatcaat aagttgaaga acacttcccg
     1801 tgagctcgtg cgtgagttgg gacgtgaacc aacgacagaa gaaatcgcca agaagatgga
     1861 cacttcggtg gacaaggtac ggaaggcccg taagctgatg caggatccga tttcactgga
     1921 gacgccaatt ggtgaaaacg gtgattcgca actcggcgac ttgatcgaag acaaatcaag
     1981 cgagagtcca gctgcgcgcg tcattacttc taacttgcgc gaaatcgccg gtgatgttct
     2041 acaaacgctg agtccgcgcg aagagcgagt gattcgtttg cgatttggcc tggacaatg
//
LOCUS       DATCGC010001696         2251 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_490251, whole genome shotgun sequence.
ACCESSION   DATCGC010001696 DATCGC010000000
VERSION     DATCGC010001696.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2251)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2251)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2251
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_490251"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1453)
                     /locus_tag="VIJ87_16160"
     CDS             complement(<1..1453)
                     /locus_tag="VIJ87_16160"
                     /inference="COORDINATES: protein motif:HMM:NF012789.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HEY5445967.1"
                     /translation="MESDFLSQLNEQQREAVSSTEGPLLILAGAGSGKTRVIAHRIAY
                     LIADKKVAPWNILAVTFTNKAAEEMRLRVQRLLKDHELPAWPLVSTFHSLCVRILRQD
                     IERLNDKYTRTFTIYDQDDSIRLIKQCIKDLGYDEKYLAPRATQSAISSAKNRGEDTD
                     AFAARAEYADERRAAIARVYKTYEERLHTNNALDFDDLMIKAVRLLREVSEVRDKYNN
                     KFRYILVDEYQDTNSLQFALIGFLTQKQQNICVVGDEDQSIYKWRGADISNILNFEKH
                     FPNTKTIRLEQNYRSTQTILDVAGAVVKHNIERKGKNLWTSNPRGDKVRYYQAFDAEA
                     EARWVANKIVEHRREEFDTRAAVLYRTNSQSRVFEESMRRAGLAYNIIGGFSFYERME
                     VRDIIAYLKLALNPNDSIALQRVINSPPRGIGKQTIEEIEKRAKDLELSLWETLGIVI
                     KQPGSLSPRAINALRSFRRTIVRLGEMAGTDMGS"
     gene            complement(1453..2010)
                     /locus_tag="VIJ87_16165"
     CDS             complement(1453..2010)
                     /locus_tag="VIJ87_16165"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HEY5445968.1"
                     /translation="MQHPNILELSRSALLIIDMQEAFRASIKDFDKFAQRIAVATQAA
                     RLLNMPLLVTEQYPKGLGHTASEIAAVLPENVEIIEKTAFSSCGAQQFQTKLQALNIK
                     QVIVSGLEAHICVNQTVHDLLAAGFQVHLLTDCIVARKKSDRKTAFKKMRSSGAILST
                     LEMALFELLRDSRHEHFKAIQGLIK"
BASE COUNT          502 a          537 c          605 g          607 t
ORIGIN      
        1 cggaacccat atctgtgcct gccatctcgc caagtctgac gatcgttctg cgaaaacttc
       61 gcagggcatt gattgcccga ggactgagac tgcccggctg tttgattacg atcccaagcg
      121 tctcccagag cgacaattcc aaatcctttg cgcgcttttc aatctcttcg attgtttgtt
      181 tgccaattcc gcgtggcggg ctattgataa cgcgttgcag cgcaattgaa tcgtttgggt
      241 tcagcgccag ttttagatac gcgatgatgt cgcgtacttc catgcgttcg taaaatgaaa
      301 agccaccaat gatgttgtaa gccaaaccgg cacggcgcat cgattcttca aacacacgcg
      361 attgggagtt tgttcgatag agcaccgccg cgcgtgtatc aaactcctca cgtcgatgtt
      421 cgacgatctt gtttgctacc cagcgcgcct cagcttcagc atcaaacgcc tggtagtagc
      481 gcaccttgtc gccacgcgga tttgaagtcc aaagattctt gcccttgcgc tcgatgttgt
      541 gcttcacaac agcgcccgca acgtcgagga tcgtctgcgt cgaacggtag ttttgctcga
      601 gacgaatagt tttggtattt ggaaaatgct tttcgaaatt caggatgttg gaaatgtcgg
      661 cgcctcgcca cttgtagatc gattgatctt cgtcgccgac aacgcagatg ttctgttgtt
      721 tctgagtcag gaaaccaatc aaagcaaact gaagtgagtt tgtatcctgg tactcgtcaa
      781 cgaggatgta gcgaaatttg ttgttgtatt tgtctctgac ttcactgacc tcgcgtagca
      841 atcgaactgc cttgatcatg aggtcatcga aatcgagcgc gttgttcgtg tgcagtcgct
      901 cttcataggt tttgtaaaca cgcgcgatgg ccgcccgccg ttcgtcagca tactcagccc
      961 gcgcggcaaa cgcgtccgtg tcttcgccgc ggttcttcgc cgagctaatg gctgactgag
     1021 ttgcgcgagg cgcgaggtat ttttcgtcgt agccgagatc cttgatgcac tgtttgatca
     1081 agcgaatcga gtcgtcttga tcgtagatgg tgaaggtgcg cgtgtacttg tcgtttagcc
     1141 gttcaatgtc ctggcgaaga attcgcacgc agagactgtg aaaagttgaa acgagtggcc
     1201 atgctggaag ttcgtgatcc ttcaaaagac gttggacacg aagtcgcatt tcctcggcgg
     1261 ctttgtttgt aaaagtgacc gccaggatgt tccatggcgc caccttttta tcagcgatca
     1321 gataagcgat gcgatgggcg attacgcgtg ttttgccaga gccggcgcca gccaggatca
     1381 gcagggggcc ttcggtgcta ctaacagctt cgcgctgttg ttcatttagt tgcgagagaa
     1441 agtcggattc cactatttga tcagtccttg aattgctttg aaatgttcgt ggcgtgagtc
     1501 gcggagaagt tcgaagagag ccatttccag ggtcgacaat atggctccac tcgagcgcat
     1561 tttcttaaag gcagttttgc ggtcagactt tttccgggca acgatgcagt ccgttaacaa
     1621 gtgaacttga aaacctgccg ccagcagatc atgaacggtt tgattgacgc agatgtgagc
     1681 ctcgagaccc gaaacaatta cctgtttaat gtttagtgct tgaagttttg tctgaaattg
     1741 ttgagcacca catgagctaa aagcagtctt ttcgattatc tcgacatttt ccggcaacac
     1801 agcagcgatt tcagaggccg tgtgacccag gcccttcggg tactgttcgg taactagaag
     1861 gggcatgttg agcaggcggg cagcctgggt tgctacagca atgcgctgcg cgaatttgtc
     1921 gaagtccttg atgctggcgc gaaaagcctc ctgcatgtcg atgatgagga gagccgaccg
     1981 cgagagttcg agaatatttg ggtgttgcat gtgatcgatt tcggagtgaa tttatacgat
     2041 caactcactc aaagcaattg cccgatatgc gtcagcgtgt cgtcgtgatc tgttacgaga
     2101 ctttgcgatc gtagatagcc gttgtggatt gttgcgacaa ggtaaagagc cacttgcaaa
     2161 agtcaggagt tgtgatcaga ttaagagcgg agttcattag gctctcattc tccccaagct
     2221 tcagcttggg gttacagtgc gctctcagta c
//
LOCUS       DATCGC010001697         1038 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_256712, whole genome shotgun sequence.
ACCESSION   DATCGC010001697 DATCGC010000000
VERSION     DATCGC010001697.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1038
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256712"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..236
                     /locus_tag="VIJ87_16170"
     CDS             <1..236
                     /locus_tag="VIJ87_16170"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014591.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Maf family protein"
                     /protein_id="HEY5445969.1"
                     /translation="VRIGGETKVDCERTRVRFAEMSDVEIDWYVASGEPKGKAGAYGI
                     QGKAALFIEQIEGDYLNIVGLPIRLVYQMSDML"
     gene            complement(411..>1038)
                     /locus_tag="VIJ87_16175"
     CDS             complement(411..>1038)
                     /locus_tag="VIJ87_16175"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY5445970.1"
                     /translation="SRTNALALVCDVSDRASVEKMFEDVSAGFNGDVDILVNNAGIAE
                     SATLANTTDELWHRHLAINLTGTFYCTRAALPAMLKNGWGRVINISSIAGKTGAPYVT
                     AYSASKHGVMGLTRSLAMEVGASGVTVNAICPGYVDTEMVSRGIDRITTRTGRSAEEA
                     LESLKRMSPQNRLVTSDEVAAIALLLASEDGRGINGQGLNVDGGTVLS"
BASE COUNT          247 a          267 c          280 g          244 t
ORIGIN      
        1 tggtgagaat tggcggcgag acaaaagtcg actgcgaacg aacccgggtt cgctttgcgg
       61 aaatgtctga tgttgagatt gactggtacg ttgcgagtgg cgaaccaaaa gggaaggcag
      121 gcgcttatgg aattcagggg aaggctgcct tgtttatcga acagattgaa ggcgactatt
      181 tgaatatcgt cggcctaccg atcaggctgg tgtaccaaat gtccgatatg ctttagcttg
      241 tcgttgtctc aggtaggttt cagccgcaga tgaacgcggg aaaacgcaga tgagaccaaa
      301 acaaactgag taggaacccc caagcaattt catttctgat cagcgtcttt ctgcgttcat
      361 ctgcggctga cacctacctg aaacaacgac aagctgaagc atatcggaca ttaggacaac
      421 accgttcctc catcaacatt cagtccttgc ccattaattc cgcgtccgtc ttcgctggcc
      481 aggagcaaag cgattgcggc gacctcatcc gaagtgacca accgattttg agggctcatc
      541 cgcttgagcg actccaacgc ttcttctgcc gaacgacctg ttcgcgtggt gatgcgatca
      601 atgccacgcg aaaccatctc ggtgtctaca taacccggac agattgcgtt gacggtgact
      661 ccgcttgctc cgacttccat cgcaagagaa cgagtgaggc ccataactcc atgtttggaa
      721 gccgagtatg cggtgacgta gggcgcgcct gtcttacctg ctatcgatga gatgttgata
      781 acgcggcccc agccgttttt tagcatcgcg ggtaaggccg cgcgcgtgca gtaaaaagtt
      841 ccggtcaggt taatcgccaa atgtcgatgc cagagttcgt ctgtcgtatt ggcgagagtt
      901 gcgctttcag cgatgccggc gttgtttacg agaatgtcga cgtcaccatt aaagcctgcg
      961 ctcacatctt caaacatttt ctcaacgctc gcacgatcgg agacatcgca gacaagggca
     1021 agcgcgttgg tacggctt
//
LOCUS       DATCGC010001698         1591 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_422340, whole genome shotgun sequence.
ACCESSION   DATCGC010001698 DATCGC010000000
VERSION     DATCGC010001698.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1591)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1591)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1591
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_422340"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            442..1314
                     /locus_tag="VIJ87_16180"
     CDS             442..1314
                     /locus_tag="VIJ87_16180"
                     /inference="COORDINATES: protein motif:HMM:NF012610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEY5445971.1"
                     /translation="MPLREQLVTQIVLGIVSNDLKAKQRLPSTRDLARRYDVHANTVS
                     AAYRELARRGWVEFRKGSGVYVRPQNDNQLDGKLALDHLIARFLKTTRAQGHSLADIQ
                     TAVQRSFTLQPPDHFLLVEPDEELRSILMAEIAEVTHCRVLGAAPADLNDSSALTGAV
                     PVVLYGHFADVQKRLEPSSDLLVIHSASVAESMHGQTRPSADSLVAIVSRWPEFLRWA
                     RTMLVAAGLDPDALTFRDARERSWEKGLRSAEFVITESLMAPKIPEGCSVKVFRLVAE
                     ASLKEIGDYAERYF"
     gene            complement(1412..>1591)
                     /locus_tag="VIJ87_16185"
     CDS             complement(1412..>1591)
                     /locus_tag="VIJ87_16185"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEY5445972.1"
                     /translation="PADISNKERMDSMTDGEVFWKISKGITGIMPAGEKRMTEEERWN
                     VVNYVRTLAKEPAKP"
BASE COUNT          356 a          414 c          419 g          402 t
ORIGIN      
        1 atggctgatg aagaatccat aggccctttt atacattgcc gatttccaat tgccaattgc
       61 cgattgattg tccgataagc tttagcttgt cgttgaccga cgacggtagt ttcagccgca
      121 gatgaacgca ggccaacgca gatccgaata aagaattgaa gcaaagctcc ttagcctctt
      181 gcaaaagtcg acttagtggc gatgaagtca gtaccataac gcggtagcgt cggctccaag
      241 cgttgcggtc tgccaattct tgcggatgta aagagccgac gctaccgcgt ttcggtactg
      301 acttcatcac cactagattc cgacttttgc aagaggctct aaagcttatc gggcatcaga
      361 aacttcaatc ggaattcggc aattttctgc tatcctcccg ctcctcaacc gatgaagctc
      421 tggctctcca aaaacagcga ggtgcccctt cgtgaacagc ttgtcacgca gatcgtgctc
      481 ggcatcgtca gcaacgacct caaggcaaaa caacgcttgc ccagcacgcg tgatctcgcg
      541 cgtcgttacg atgttcatgc caataccgtc agcgctgcct atcgagaact ggcgcgtcgc
      601 ggctgggtag agtttcgtaa aggaagtggt gtttatgttc ggccacaaaa cgacaaccaa
      661 ctcgatggca agctcgcgct cgatcacctg atcgctcgat tcttaaaaac tacccgggcg
      721 cagggccact cgctcgccga tatccagacc gcagttcagc gttcatttac attgcaaccg
      781 cccgaccatt ttttgttagt tgagcccgac gaggaactgc gctcgatctt gatggcagag
      841 attgccgaag ttacacactg cagagtgctg ggtgcggcac cggctgattt gaatgattcc
      901 agcgcgttga ccggagctgt tcccgtcgtt ttgtacgggc actttgcaga tgtgcaaaaa
      961 cgattggagc catcgtcgga tctgctggtc attcactcag cttcggtggc tgaatcaatg
     1021 cacgggcaaa cgcgtccgtc cgcagattct cttgtagcaa ttgtttcgcg ctggcccgag
     1081 ttcttgcgtt gggcgagaac gatgttggtt gcagcaggac tcgatccaga cgcactgacg
     1141 tttcgcgatg cacgcgagcg cagttgggaa aagggactac gttcagctga gtttgtgatt
     1201 actgagtcgc tgatggcccc gaagattccg gagggctgtt cggtgaaggt cttcagactg
     1261 gttgctgagg cgtcattgaa agagattggt gattatgcag agcggtactt ttgaggaggg
     1321 gctttggtct ttggtctttc ggtcttctga aaatcggtgc aacgcaacga aataatccca
     1381 agacctaaga ccaaaggcct aagaccagtt cctacggttt cgccggttct tttgccaggg
     1441 tgcgaacgta atttacaacg ttccagcgtt cttcttccgt cattcgcttc tcacccgcgg
     1501 gcatgatccc ggtgatgcct ttggaaattt tccagaaaac ttcaccgtcg gtcattgagt
     1561 ccattcgttc cttattcgag atatcggcgg g
//
LOCUS       DATCGC010001699         3077 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_389351, whole genome shotgun sequence.
ACCESSION   DATCGC010001699 DATCGC010000000
VERSION     DATCGC010001699.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3077)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3077)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3077
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_389351"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..483
                     /locus_tag="VIJ87_16190"
     CDS             <1..483
                     /locus_tag="VIJ87_16190"
                     /inference="COORDINATES: protein motif:HMM:NF012567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HEY5445973.1"
                     /translation="KGPKGTLKTPVPAGISFKVDGEELRAERTSDDVAALHGLARALA
                     NNAIVGVTEGFSKQMDVVGVGYKADVQGKKIVFSLGYSHPIEFPLPAEVEAKAERMTT
                     KGSIQQYQTTLTLTSIDKQKLGQVAAEMHKLRKPDAYKGKGVRYAGVPIKLKPGKTGK
                     "
     gene            499..849
                     /gene="rplR"
                     /locus_tag="VIJ87_16195"
                     /pseudo
     CDS             499..849
                     /gene="rplR"
                     /locus_tag="VIJ87_16195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016293491.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
     gene            954..1460
                     /gene="rpsE"
                     /locus_tag="VIJ87_16200"
     CDS             954..1460
                     /gene="rpsE"
                     /locus_tag="VIJ87_16200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004074875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HEY5445974.1"
                     /translation="MRQPKQRIPAQGLDLKDQVISINRVTKVVKGGKNLSFAALVVVG
                     DEGGHVGFGTGKAREVPLAIKKAIEAAKKSLIRVPLINNTLPHQLIGEYGAGRVLVKP
                     ASEGTGVIAGGAVRAVMQAVGVHDVRTKVLGSTNPHNVVRATFDALLRMKDPMELARL
                     RGKQVEDM"
     gene            1476..1691
                     /gene="rpmD"
                     /locus_tag="VIJ87_16205"
     CDS             1476..1691
                     /gene="rpmD"
                     /locus_tag="VIJ87_16205"
                     /inference="COORDINATES: protein motif:HMM:TIGR01308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HEY5445975.1"
                     /translation="MAEKRSKKSEPATSGTIKIQYYRSFIAAPKKHKAVVRSLGITKL
                     NQVVERPDTDSMRGAVAKIPHLLRIVD"
     gene            1742..2191
                     /gene="rplO"
                     /locus_tag="VIJ87_16210"
     CDS             1742..2191
                     /gene="rplO"
                     /locus_tag="VIJ87_16210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004074878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HEY5445976.1"
                     /translation="MSLNSLRPAKGSTHKKKRVGRGPGSGLGKTAGRGEKGQKSRSGY
                     SRKIGFEGGQMPLHRRLPKRGFTNIFKKQWLEVSLAALDKHFNADEEINPEVLHSRGI
                     IKKAKHDVVVLGNGEVSKPLRVSAHRFTKSAREKIEKAGGAAVEIAG"
     gene            2219..>3077
                     /gene="secY"
                     /locus_tag="VIJ87_16215"
     CDS             2219..>3077
                     /gene="secY"
                     /locus_tag="VIJ87_16215"
                     /inference="COORDINATES: protein motif:HMM:TIGR00967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HEY5445977.1"
                     /translation="MEKFLAAVRNMFNVPDLRRRIFFTLGLLAIYRLGAHVGAPGINK
                     ARLDQVWRDVAGTLLGVLDLFSGGNFRTISIFALGVTPYITASIILQLMTVVSPQLKK
                     LQEEGEMGRQKINQWTRYLTVGLAGIQTSFVAHWLQVNGVGAPTWGFLLTTVLTLTTG
                     TMFVMWLGEQITERGIGNGISLLIFAGIVIGLPRGVQQVFDRVRGGDTMEVLGVFGLL
                     IALIGIIAFIVFVEAARRKIPVSYAKRHVGRQLVGGQQTTMPLKINMGGVIPVIFASS
                     VLSMPQSLFA"
BASE COUNT          777 a          694 c          912 g          694 t
ORIGIN      
        1 aaaggtccga aaggtacttt gaagactccc gtcccggcag gtattagttt caaagtcgac
       61 ggcgaagagc tgcgtgctga gcgaacgtct gacgacgtag cggcgctgca tggcctggct
      121 cgggccctcg ctaacaacgc aattgtcgga gtcacagaag ggtttagtaa acagatggat
      181 gttgttggtg ttggctacaa ggctgacgtg cagggtaaga agatagtttt ctccctcggc
      241 tattcacatc cgatcgagtt tccattgcca gctgaagtcg aagccaaagc cgagcgaatg
      301 acgacgaaag gtagcattca gcagtaccag acaactttga cgctaacgag tattgataaa
      361 cagaaacttg gtcaggtcgc ggcggagatg cacaagctgc gcaagcccga tgcttataag
      421 ggtaaaggcg ttcgttacgc tggagtaccg atcaagttga agcctggtaa gacagggaag
      481 taaatattaa gaggaactat ggcaaacacg aatagagcag tagtgcgaac cgccattcac
      541 cagcgtattc gtcgcaaggt gaaaggaagt actgaccggc ctcggctcgc aatctatcga
      601 agcttgaatc atatctacgc ccaggtgatc gatgaccgtc aggggcaaac cttagtgtcg
      661 gcttcaagcg ccgaaaagga actgcgtggt aatactggcg gcaatcttga tgcagcgcga
      721 cgcatcggtc aggcgatagc cgaacgagca ttggcaaaag gtattgaaca ggtagtcttc
      781 gatcgaggcg gctatctcta tcatggtcgt atcaaagcgt taaccgatgc ggcccgcgcc
      841 gccggtttga acaagaacga agtggctgcc gctgaggaag aacaacctga ggccgctgca
      901 ccggaagcaa ccgaagagaa gaagccgcgt aagaagaaaa gtaaagaata gttatgagac
      961 aacccaagca acgtattcca gcacagggac tcgatctaaa ggatcaggtg atctcaatca
     1021 atcgcgtcac caaagtagtt aagggtggta agaacctttc gttcgcggcg cttgtcgtcg
     1081 tcggtgacga aggtggccac gtgggcttcg gaaccggtaa agcgcgagaa gttccgctcg
     1141 cgataaaaaa agcaatcgag gccgcaaaga aaagtttgat tcgcgtgccc ttgatcaata
     1201 acactttgcc gcaccaactg atcggtgaat acggcgcggg tagagtcttg gttaagccgg
     1261 cgtcagaagg tactggcgtt attgccggcg gcgcggttag agccgtgatg caggcagttg
     1321 gcgttcatga cgtgcgaaca aaggttcttg gttcgacgaa tccacataac gttgtgcggg
     1381 cgactttcga tgcgctgtta cgcatgaaag atccgatgga gttggcgcgc ttgcgcggca
     1441 agcaagtcga ggatatgtaa ttttagcgag gtgttatggc tgagaagcga agcaagaaaa
     1501 gtgaaccggc gacttcgggc acgataaaaa ttcagtacta tcgtagcttc attgcggcgc
     1561 caaagaagca caaggctgta gtgcgaagcc tgggcatcac aaaactaaat caggttgtcg
     1621 aacgtcccga cacagattcg atgcgcggtg cggtcgcgaa gattccgcat ttgctgcgca
     1681 tagtcgatta aactcgcact tgatttagaa gagaaagaaa cttaacggag tagatatggc
     1741 tatcagtctt aacagtcttc gaccagcaaa gggctcaacg cacaagaaga agcgagtcgg
     1801 caggggacca ggttcgggtc ttggcaaaac cgcaggtcgc ggtgagaagg gacaaaagtc
     1861 tcgttcaggc tactcgcgta agatcggctt tgaaggtggt cagatgccgc ttcatcgtcg
     1921 cttgccgaag cgtggattca caaacatctt caagaagcag tggcttgaag tgagccttgc
     1981 cgcactggat aagcatttca atgcggatga agagatcaat cccgaggtgc tacatagccg
     2041 gggaatcatc aaaaaagcaa agcatgatgt agttgtgctg ggcaatggtg aggtttcgaa
     2101 gcccttgcgc gtgtctgctc atcgcttcac gaagagtgca cgcgagaaga tcgagaaggc
     2161 tggcggtgct gcggttgaga ttgcaggtta gttcggaaac gttacccgaa ggattcacat
     2221 ggaaaagttt ctagctgccg ttcggaatat gttcaatgtg ccggatctcc gccggcgcat
     2281 tttctttacg cttggtctgc ttgctattta ccggcttgga gcacacgttg gagctccagg
     2341 aattaataag gcaagactcg accaggtttg gcgcgacgtg gcaggaacac tgctcggcgt
     2401 tcttgacctg ttctcaggtg gcaacttcag aactatttcg atcttcgcgc ttggcgtcac
     2461 cccctacatc acggcctcga ttattttgca gctcatgacg gtagtctcgc cgcagttaaa
     2521 gaaactgcag gaagaaggcg agatggggcg gcagaagatt aatcagtgga cccgttatct
     2581 gaccgtgggt ttggctggca ttcaaacgtc attcgttgct cattggttgc aagtgaatgg
     2641 tgtaggcgct ccgacgtggg gcttcctttt gactacggtt cttaccttga ccacgggaac
     2701 gatgtttgtg atgtggctcg gagagcagat tactgaacgc gggatcggca acggaatttc
     2761 gttactgatt tttgctggta tcgtgatcgg cttaccgcgt ggcgttcagc aggtcttcga
     2821 tcgtgtgcgc ggcggcgaca cgatggaagt ccttggcgta ttcggtttgc tgattgccct
     2881 gatagggatc atagcgttta tcgtgtttgt ggaagcggca cgcaggaaga ttcctgtcag
     2941 ctatgcaaag cgacacgtgg gtcgtcagtt agttggtggt caacagacca caatgccgct
     3001 gaagatcaat atgggcgggg taatcccggt gattttcgcg tcgtctgtat tgtcgatgcc
     3061 ccagagtttg tttgcgg
//
LOCUS       DATCGC010001700         1259 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_422351, whole genome shotgun sequence.
ACCESSION   DATCGC010001700 DATCGC010000000
VERSION     DATCGC010001700.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1259)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1259)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1259
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_422351"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..427)
                     /locus_tag="VIJ87_16220"
     CDS             complement(<1..427)
                     /locus_tag="VIJ87_16220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445978.1"
                     /translation="MKTITTGLTLALCFFGAGLSLADDPQMGTWKLNESKSTFASGAT
                     KNHTVVYEAAGDNVKITVDGTDKEGKSTHNEWTGKFDGKDYAVTGDPTSDMRSYSKVD
                     DRTLKMTVKKDGKVTATGRVVVSADGKSRTVTTSGTDREG"
BASE COUNT          291 a          337 c          314 g          317 t
ORIGIN      
        1 tgccttcccg atcggttccg ctcgtggtga cggtgcggga cttgccatcg gcggacacaa
       61 caacccgacc ggtggctgta acctttccgt ctttcttcac cgtcattttc aatgttctat
      121 catcaacctt gctgtacgac cgcatatctg aagtcgggtc gcccgtgacg gcgtagtcct
      181 tgccgtcgaa ctttcccgtc cactcattgt gcgtggactt accctcctta tctgtgccgt
      241 ccacggtgat ttttacgttg tcaccggcag cctcataaac aacggtgtga ttcttcgtcg
      301 cccctgaggc gaacgtcgat ttactttcgt tcaacttcca cgtgcccatc tgtggatcgt
      361 cggctaagga caatcccgct ccgaaaaagc aaagtgccag agtcaatcca gtcgttattg
      421 ttttcatatc gccaattcga acggagactc ccatccctcg tcaacatttt tcagaacgca
      481 acttgcgtca cgcatggaat cctcgccggc gagcaattcg aattgctgac gcacatcgcg
      541 gcgacgggaa gcacgttgcg agtgttatct ttatttggtg taccaatatg caaagacaat
      601 gaacgctatg cacagagcca acggactaaa ggcaagcagt aggtgtaaga gagtgtccat
      661 ccgggggtac gtcttacttg tcttttcgtt gagcgcagta acgctggacg tttcaggccg
      721 ataaaaagct ttagcgcggt gagacctaaa gcgtgtagga ttcgccgata gcatcagagg
      781 ccggacacca tctgccatcc ccggcaatca aaaaccattc tagcgcgatg gtaaaatcgt
      841 aaaaggcaga agagacaatc gctcaacgag tcctgccttt cataaacgcc ccgcgcttca
      901 ttgcagtcgc tcatatcact ttctcgttgc agtgtggaga acaaaacagg cacaattctc
      961 agggccgaac gatctggatt gtggacgcgc atggctacgg aaagcgtttc atcgtgcgag
     1021 ctgaagaaat tctgaccgcg tttgtggaac tggaaaaggg cgatacacga gttcgcggtg
     1081 agttcgtgtc tgtgccggtg tcagatcgtg tagccgctaa gtttcccctg accttcaata
     1141 tcctggttgc ttgtcgagcg gtttgtccaa gtcagacacg acaatattgg gacgttccgg
     1201 aacgtaaaag aaatatgtga agacctcgac cggcttccca tctttcatct taggctttg
//
LOCUS       DATCGC010001701         1192 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_422357, whole genome shotgun sequence.
ACCESSION   DATCGC010001701 DATCGC010000000
VERSION     DATCGC010001701.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1192
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_422357"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..369
                     /locus_tag="VIJ87_16225"
     CDS             <1..369
                     /locus_tag="VIJ87_16225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445979.1"
                     /translation="QGFRPETQETQLQRFFSNKFNPSAKFGYDLLRAAQYVPFHVGDR
                     TAQMFVPLVAQDMYEMFKEDPKLIPLLMPAVMLGGGTQIYGRGEQVAKIVPKKYDWVV
                     QGGGLSDIAYPANWQIFGGK"
     gene            complement(370..561)
                     /locus_tag="VIJ87_16230"
     CDS             complement(370..561)
                     /locus_tag="VIJ87_16230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445980.1"
                     /translation="MTLSPVFEVKMKPKSESPIIYLVVRVITDDSDKLMDFIDVTFPD
                     YQIEHIIGGYARLNDEEKE"
     gene            complement(769..>1192)
                     /locus_tag="VIJ87_16235"
     CDS             complement(769..>1192)
                     /locus_tag="VIJ87_16235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445981.1"
                     /translation="GTLNRFGDSVLKVAMLLSLSRSPELYIDEDSMTLAIQYSEKLIG
                     NVREMTHGKKGLSEAKNFKKVIIEELLARETHQISRAMLLKKMWAHYKDATELDDIMM
                     SFDQAGMIKTESIGSQIIYIMPDNQVQELKRLYAGKNK"
BASE COUNT          290 a          285 c          275 g          342 t
ORIGIN      
        1 caaggattca ggccggaaac acaggaaact cagttgcaga ggttcttctc gaacaagttc
       61 aatccgtctg cgaaatttgg gtatgaccta ttgagagcgg cgcagtatgt gccattccat
      121 gtgggggata gaaccgcgca gatgttcgta ccactagtgg ctcaggacat gtacgagatg
      181 tttaaggaag atccgaaact aattccactc ctcatgcctg ctgttatgtt gggtggaggt
      241 acgcagattt acggcagagg tgaacaggta gccaagattg taccgaagaa gtacgattgg
      301 gttgtgcagg gtggtggatt gagtgatatt gcataccccg cgaattggca gattttcgga
      361 gggaagtaat cactcctttt cctcatcatt caaccgtgcg tatcccccga tgatgtgttc
      421 aatctgataa tcggggaatg tcacatcaat gaagtccatc agcttatctg aatcgtcagt
      481 tatcacgcgc accacgagat agataattgg cgattcagac ttcggcttca tcttcacttc
      541 aaacactgga cttagcgtca tattcgtcct ccacgtaatc agttggccgt gctgtatgtg
      601 tccccaagcg aatcttgcag tagacacagt atttaaccct cccaaacatg actgcgccac
      661 acttcacaca agtccagttt ttacaagaga tgtaccagcg cacataatcg tagtcaggtc
      721 catcattcaa ttccttcgcc tgttcagtgt atgtaggtct ggggataatc atttgttctt
      781 acctgcatac agtcgtttca gctcttggac ctgattgtct ggcatgatgt agatgatttg
      841 actgccgatt gattcggtct taatcatgcc ggcttggtca aatgacatca tgatgtcgtc
      901 tagttcagtc gcatccttgt agtgcgccca catcttcttc agtagcatcg cacgagagat
      961 ttgatgtgtc tctcttgcaa gcagttcctc gataatcacc ttcttaaagt tcttagcttc
     1021 tgatagaccc ttcttcccgt gagtcatttc cctcacgttg cctatcagct tctccgaata
     1081 ctgtattgca agagtcattg aatcctcatc gatgtagagt tcgggggagc gactgaggct
     1141 cagcaacatg gcaaccttca gcacactgtc accgaatcta tttagtgtgc ct
//
LOCUS       DATCGC010001702         1901 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_156294, whole genome shotgun sequence.
ACCESSION   DATCGC010001702 DATCGC010000000
VERSION     DATCGC010001702.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1901)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1901)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1901
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156294"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..902)
                     /locus_tag="VIJ87_16240"
     CDS             complement(<1..902)
                     /locus_tag="VIJ87_16240"
                     /inference="COORDINATES: protein motif:HMM:NF039503.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5695 domain-containing protein"
                     /protein_id="HEY5445982.1"
                     /translation="MNPIRLGSIALAFLLIPFFLSHGLAQNPSPTPTPTPTLGLEQGF
                     QEFDTPDFKLKLVKASQTIGALQPNNSNGFDFTPNDRLGRRAANGYYHLGDLTFRLRT
                     NSSDSWREFSTAAARKPVTPLPASGKTLAAADLGPTLPADTPLQITRSWIVENGRLVL
                     RFELKNKSTVPVEIGALGIPVIFNNMITGRNLEQAHQICSFSDPYIGLDAGYLQVTRL
                     SGHGPSLVVVPDGQTPFEAYQILNEPSRPNQTFEGAFAWMVHTRSFAENEWKDASQWN
                     TPTSTTLQPGSSKTYGLKFLVSDE"
     gene            complement(1077..1454)
                     /locus_tag="VIJ87_16245"
     CDS             complement(1077..1454)
                     /locus_tag="VIJ87_16245"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY5445983.1"
                     /translation="MKELKVFLADDSEPIRQQLERALSLIDGCKLVGTASGGNDAIEL
                     IRSLQPDVVVLDISMSHREGIRVLREIRKEVPVAQIIIFTADPSVVLQEVCLEAGADF
                     YLHKTQIQDLIDILSVQLGESTP"
     gene            complement(1675..>1901)
                     /locus_tag="VIJ87_16250"
     CDS             complement(1675..>1901)
                     /locus_tag="VIJ87_16250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445984.1"
                     /translation="QLRPEALEQLMAGVGSVHPEDTREEVRKRLVNEKARIQAQLDLF
                     RQDRVRTQASLATTDAAILRLKQKLADALR"
BASE COUNT          449 a          442 c          524 g          486 t
ORIGIN      
        1 atttcatctg atactagaaa cttcaagccg taagtttttg atgagcccgg ttgcagcgtt
       61 gtcgaggttg gcgtattcca ttggctggca tccttccatt cattctctgc aaaggagcgc
      121 gtgtgaacca tccacgcaaa agctccttcg aacgtttgat tgggacgcga aggttcgtta
      181 agaatctggt aagcctcgaa tggtgtttgt ccgtcgggaa ccacgacgag tgatggtccg
      241 tgaccactca aacgtgtgac ttgcaggtag cctgcgtcaa ggccgatgta cggatcggag
      301 aacgaacaga tctgatgagc ctgttcaaga ttgcgacccg tgatcatgtt gttgaagatg
      361 acgggaattc ccagcgcacc gatctcgacg ggcactgtgc ttttgttttt cagttcgaag
      421 cgcagtacaa gtcggccgtt ttccacaatc caggaccgag tgatttgaag tggtgtgtcg
      481 gcaggaagtg tcggacccag gtcggctgcg gcgagtgttt tgcccgaagc gggcagggga
      541 gtaacaggtt ttcgagcggc agccgtcgag aactctcgcc acgagtcaga actgttcgtg
      601 cgcagccgga aagttaaatc gccaagatga tagtagccat ttgctgcacg tcggccgagt
      661 cgatcgtttg gagtgaagtc gaagccattg gagttattgg gttgtaaggc tccaatagtt
      721 tgcgacgctt tgacgagctt aagtttgaaa tcaggagtat cgaactcctg gaaaccctgc
      781 tctaagccaa gcgttggcgt gggcgtgggc gtcggagatg ggttttgagc aagaccgtga
      841 gaaagaaaaa aggggattag gagaaacgct agagcaatcg atccgagtct gattgggttc
      901 atcgaaggga tctcgtttca ggactttggt tcgtctgcgg taaggcttct cagacttttt
      961 gggcataaaa atacaccgag cgcagcgcgt ttgtcccctt caaactcacg cgcgcgctcg
     1021 gtgtcgcgct agccttttct tgcaggaaag aaaggccggc gcgatttcgg tagcaattag
     1081 ggagtacttt cgcctaactg tacagataaa atatctatta ggtcctgaat ttgggttttg
     1141 tgcagataga agtctgctcc ggcttcgagg caaacctctt gaagaactac cgaaggatca
     1201 gccgtgaata tgatgatctg ggcaaccggg acttcttttc gaatctctcg gagaacgcga
     1261 atgccttctc ggtgagacat cgaaatgtcc aataccacca cgtcaggctg gagggagcgt
     1321 ataagttcaa tggcatcatt gccaccgctt gccgtcccaa ccaacttaca cccgtcaatt
     1381 aatgaaagag ctcgttctaa ttgctgtctt atcggttctg aatcgtcagc gagaaaaacc
     1441 tttaattctt tcaatactgc acttcctttt cacctaccaa aaccgaggag attttgcctg
     1501 cagaccgata cgcatgctat caagcgaact atgattctct tgtaggggga cgccccctaa
     1561 tgcgtgtcag tgtttgccct acaagaagac agagaggtct aaaattcctt aagaaaatga
     1621 agggtttggt gccgaccggt gggtgccctt aaattgcgga gaaactaacc aattctacct
     1681 gagagcgtcc gcgagctttt gcttgagtct gagaatggca gcatcagtgg tcgcgagcga
     1741 cgcctgggtg cgaacacgat cctgacggaa tagatcgagc tgggcctgga tccgggcctt
     1801 ttcatttacc aggcgttttc tgacttcttc ccgagtatct tccgggtgta ctgatccgac
     1861 gcctgccatt agttgttcaa gagcttcagg tcttagttgt t
//
LOCUS       DATCGC010001703         1560 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_490305, whole genome shotgun sequence.
ACCESSION   DATCGC010001703 DATCGC010000000
VERSION     DATCGC010001703.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1560)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1560)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1560
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_490305"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(62..1102)
                     /locus_tag="VIJ87_16255"
     CDS             complement(62..1102)
                     /locus_tag="VIJ87_16255"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEY5445985.1"
                     /translation="MEFPSTAEIAFAQDNAQVEGQSSSEPPRDDVLLDAYSRAVIEAA
                     EKVSPSVVYIQVTTKRNSRRQPEREATGSGSGFVVTPDGFILTNSHVVHGATKIDVAL
                     MDGRRFQAQLIGDDPDTDLAVIRITAPNLVPANLGTSQSIRVGQLVIAIGNPYGFQYS
                     VTAGVVSALGRSLRAQSGRLMDGVIQTDAALNPGNSGGPLVNTRGEVIGVNTATILPA
                     QGICFATSIDTAKFVAGRLIRDGRISRSYIGFAGQNVPIPRQIVRYYQLPVESGILVV
                     SFENNTKASPAKEAGLLTGDLIVDFDGHPIQGIDDLHKLLTDERIGRSTPVTIIRGTQ
                     KLILNVIPHESK"
     gene            1280..1528
                     /locus_tag="VIJ87_16260"
     CDS             1280..1528
                     /locus_tag="VIJ87_16260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445986.1"
                     /translation="MAWDGDDLAGQAEDAIERQQALAEARASRPNFSAEQRVRNGEIE
                     SLRLSRARVLAQLENATNPAHRRMLESALQSIGEKMQN"
BASE COUNT          368 a          395 c          417 g          380 t
ORIGIN      
        1 gacgcctgcg gtcccagaag agggcgtccg ttagttcaag ggcgtcacta aagggaatcg
       61 tttattttga ttcgtgtggt attacattca agattagttt ttgagttccg cgaatgatcg
      121 tcactggagt acttcgtccg atacgttcgt cggtaagtaa cttgtgcagg tcgtcaatgc
      181 cttgaatggg atgaccatcg aagtcgacga tcaaatcacc ggttagcaac cccgcctctt
      241 ttgccggact cgcttttgta ttgttctcaa acgacaccac aagtattccc gactccactg
      301 gcagttgata gtagcgaacg atctgccgcg gtatcggaac attttgtcct gcaaagccga
      361 tgtagcttct gctgattcga ccgtctctaa tcaagcgacc cgccacaaac tttgctgtgt
      421 cgatcgaggt tgcaaagcag atcccttgag caggcagaat cgtggcggtg ttgacgccga
      481 tcacttcacc gcgcgtgttt accagtggcc cgcccgagtt tcccggattt agcgcagcat
      541 cggtttgaat cacgccgtcc atcaggcgac ccgattgtgc gcggagcgag cgaccaagcg
      601 cgctgaccac tcccgcagtc acggaatact gaaagccgta gggattgccg atcgctatga
      661 ctaactggcc aacgcgaatt gattgtgacg tgcccaggtt tgcgggaacg agattaggag
      721 cggtgatgcg aatgacagct agatcagtgt caggatcatc gccgataagt tgcgcctgaa
      781 atcgtcgtcc atccatcagc gcaacgtcga tcttagtagc tccatgaaca acgtggctgt
      841 tggtcagaat gaatccgtcg ggcgtgacta caaagcctga cccgctgccc gttgcttcac
      901 gttccggttg gcgtctactg tttcgcttag tcgtaacctg gatgtaaacg acggatgggc
      961 tcaccttttc cgccgcctcg attaccgctc gcgaataagc atccagaaga acgtcatctc
     1021 gaggaggctc gcttgatgat tgcccctcca cctgagcgtt atcttgtgca aaagctattt
     1081 ctgcagtgct tgggaattcc atgtgtatct cctgaaacct tgtctgcttt aaataatacg
     1141 ggtttgtgtc aagtgggcgg ctcgtactga cctcttactc gcacaatgtt aggatggttg
     1201 agtcaatctt gagttaatta gggcggggaa gttctcagat cttaaatctg agatctgaga
     1261 tgtttgagga ggtgacgaaa tggcatggga cggagacgat ctggcaggac aagctgaaga
     1321 tgcgatcgag cgacaacaag cattggcgga agcgcgcgca agcaggccga atttttcagc
     1381 tgaacagcga gtgcgcaacg gagaaatcga atcgctgaga ctttctcgcg ctcgcgtctt
     1441 agcccaactc gaaaacgcga ctaaccccgc acacaggcga atgcttgaaa gcgctctgca
     1501 atcgatcggc gaaaagatgc agaactagct acttgttttc aaaaacaagc actcgtttag
//
LOCUS       DATCGC010001704         1658 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_27705, whole genome shotgun sequence.
ACCESSION   DATCGC010001704 DATCGC010000000
VERSION     DATCGC010001704.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1658)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1658)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1658
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27705"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..267)
                     /locus_tag="VIJ87_16265"
     CDS             complement(<1..267)
                     /locus_tag="VIJ87_16265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445987.1"
                     /translation="MKYLSWRLLLFVVIAMGIMVFSSLPVDAQCSMCRAALTGSNNGK
                     FLRNFNIGVLVLLVPPVSIFCSIFIVLRRHRGDGTENSETNGNQS"
     gene            complement(267..623)
                     /locus_tag="VIJ87_16270"
     CDS             complement(267..623)
                     /locus_tag="VIJ87_16270"
                     /inference="COORDINATES: protein motif:HMM:NF015582.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C oxidase subunit IV family protein"
                     /protein_id="HEY5445988.1"
                     /translation="MSAHADEHFAGSNKLFTSIWVVLVVLTLIEILLAYKTMPIHIML
                     TILLGLSIIKAALIVAYFMHLKFERLSLIVTLVPMLVVCICLLMVFFPDSFRSSGLRY
                     RFQEAPPVAPAPVEEP"
     gene            complement(649..1338)
                     /locus_tag="VIJ87_16275"
     CDS             complement(649..1338)
                     /locus_tag="VIJ87_16275"
                     /inference="COORDINATES: protein motif:HMM:NF012720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 3"
                     /protein_id="HEY5445989.1"
                     /translation="MSTEAQAGHFPAVDWNGGAFPYRVGHRKLGMWLFIISDSLTFSA
                     LLMGYAYLRASNNWPTPFPFYPSIVFSSVMTFCLLSSSLTMVFGVSASSKGDKAKARK
                     WILATIFFGVAFIVLHLIEWRHLLGEGLTPFYLPKEWAEAFTLTDGTPPTSLFGATFF
                     AITGLHMFHVATGAIYLLVVAARVKKLKHEDIEISGLYWHFVDLVWMFVFPLIYIMSV
                     DMHGALAHVAK"
     gene            complement(1342..>1658)
                     /locus_tag="VIJ87_16280"
     CDS             complement(1342..>1658)
                     /locus_tag="VIJ87_16280"
                     /inference="COORDINATES: protein motif:HMM:NF012720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 3"
                     /protein_id="HEY5445990.1"
                     /translation="LLITMLLGLGFLAAQLLAWKQLARQGVYLISNPHSSFFYLLTAV
                     HAVHLIGGLLALIFLWVRSRFTKELKVTPRGQAVADAVTIYWHFMDALWIYLFLLLFL
                     WR"
BASE COUNT          494 a          435 c          405 g          324 t
ORIGIN      
        1 actttggttt ccatttgtct cagagttttc cgttccatcc cctcggtgac gccggagaac
       61 aatgaagata gaacagaaga tggagaccgg tggtaccagt aacaccaaca cgccaatatt
      121 gaagtttcgc agaaactttc cattgtttga tcccgtcaat gctgctcgac acattgagca
      181 ctgcgcatcg acaggaagac tgctaaacac catgattccc atggcaataa caacaaagag
      241 cagcaggcgc caacttaaat atttcattag ggctcctcga cgggcgcggg tgcgactggt
      301 ggtgcttcct gaaacctata acgcagacct gaggaacgga agctgtccgg gaaaaacacc
      361 atcagtaaac aaatacagac caccagcatc ggcaccagcg tcacaatcaa actcaaacgc
      421 tcaaacttca agtgcatgaa gtaggcgacg atcagcgcag ccttgataat cgacaggcct
      481 aacaggatcg tcagcattat gtggattggc attgtcttgt aggccaacag aatttcgatt
      541 agcgtcaaga caactaaaac aacccagata gaggtgaaca gtttattact gccggcaaag
      601 tgctcatcag cgtgtgcgct catcgaatca gatcctccag atggatccct atttcgctac
      661 atgtgctaaa gcaccgtgca tgtcgacaga catgatgtaa atcagcggga acacaaacat
      721 ccacacgagg tcaacaaagt gccagtacaa gccactgatt tcgatatcct cgtgttttag
      781 ttttttgacc cgcgcggcta cgaccagcag gtagatggcg cccgtcgcaa cgtgaaacat
      841 atggagaccg gtgatcgcga agaaggttgc gccgaacaag gaagtaggtg gcgtgccgtc
      901 agtaagagtg aaagcttccg cccactcttt tgggagatag aaaggcgtca agccttcgcc
      961 cagcaggtgc ctccactcaa tcaagtggag cacgataaaa gcaacgccga aaaatatcgt
     1021 tgccagaatc cacttgcgtg ctttggcctt gtcgccctta ctcgatgcgg agacgccaaa
     1081 caccattgtc aaactcgacg acaataagca aaacgtcatc accgaggaaa agacgatgct
     1141 cgggtagaac ggaaaaggcg ttggccaatt gtttgacgcg cgcaggtagg cgtaacccat
     1201 tagcaacgcg gagaacgtca gggagtcgga gataataaac aaccacatcc ccaactttcg
     1261 atggccgacg cgataaggaa acgcaccacc attccaatct accgctggaa aatgtccagc
     1321 ttgtgcttca gtgctcaccc gtcacctcca aaggaatagg agtagaaata ggtagatcca
     1381 aagagcgtcc atgaaatgcc agtaaatcgt aactgcatcg gcaacagcct gaccgcgtgg
     1441 cgtcacctta agttccttcg tgaagcgtga tcgcacccaa aggaaaatca gtgccagcag
     1501 accgccgatc aagtgcacag cgtgtacggc ggtcaaaaga tagaagaacg aactgtgcgg
     1561 attactgatg agataaacac cttgccgcgc caactgcttc caggccagga gttgagcagc
     1621 aagaaagccc agccccagca gcatcgtgat cagcaacc
//
LOCUS       DATCGC010001705         1230 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_91936, whole genome shotgun sequence.
ACCESSION   DATCGC010001705 DATCGC010000000
VERSION     DATCGC010001705.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1230)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1230)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1230
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91936"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            228..590
                     /locus_tag="VIJ87_16285"
     CDS             228..590
                     /locus_tag="VIJ87_16285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445991.1"
                     /translation="MKKLIVMLGCLVIAPLAFAQPSSVDKKQATTTTEPVKVTGTISR
                     ATSEEGAAASYQPRSTLVVRQDSSNSPGRYVLNGRGHVVNRVGEIVQTAIKPGTRVRV
                     YYANMGDLRMIDHVVIVD"
     gene            complement(778..>1230)
                     /locus_tag="VIJ87_16290"
     CDS             complement(778..>1230)
                     /locus_tag="VIJ87_16290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445992.1"
                     /translation="DSLVKIRSAMDQHSSPIDQATLARFITEGFFLSHIKRMRKIYAE
                     RRDFFIKQFNELLGDRFTLQVPEAGLNIVAWLKREEDFELIKRITSDIGVRPSALSFF
                     CIQAKLKPAFVFGFAAWTPTQIRESLIKLASALSSRSNDLNQGQSRRK"
BASE COUNT          314 a          299 c          329 g          288 t
ORIGIN      
        1 aagatcggat cgatttctac gcgatccact cggtgttgaa taacacgtta cggattggct
       61 gcgtagttct cgataacgtg tggaacgccg ctgaagcaag cccctactta atcctaccaa
      121 cgctgccaaa gtgggccgtg ggaaacgcgt gaagtggctc ttgttgaatg cttgttacgt
      181 ccagagactg cctcgacaga acaaccatca acaataggag acgaaccatg aagaaactaa
      241 tcgttatgct cggctgtttg gtgattgcgc cgctggcgtt cgcccagccg agttcagtag
      301 acaagaaaca agcaacaact acaacggaac cggtaaaggt aactggaacg atcagcagag
      361 caacgagcga ggaaggcgcg gctgccagtt atcagcctcg cagtacgctc gttgttcgac
      421 aggacagttc gaatagtcct ggccgttatg ttctcaacgg gcgtggtcac gttgtgaaca
      481 gggtaggaga gatcgtccaa acagcgatta aacccggcac tcgcgtgcgt gtttattacg
      541 caaacatggg cgatttgcgt atgatcgatc atgtagtcat cgtggattga acacacgaaa
      601 actgaacaca agccgcaggg ttccgtaaag ccctgcggct tttttgtgta tcggttcagc
      661 cagattgcgg ctcacaccaa gtttgcgtga catcaaacga cgcatttgcg caaattgctg
      721 cggtggagct ttcgacggtc gcaaacattg caacggccct cacagtgtta acggtggtca
      781 ttttcggcgt gattgcccct ggttaagatc gttgctgcgg ctgctgagtg ccgatgcgag
      841 tttaatcagg ctttcccgaa tctgagttgg tgtccaggcc gcgaatccga agacgaaagc
      901 gggctttagt ttcgcctgaa tgcaaaagaa cgagagcgct gacggtctta ctccgatatc
      961 agacgtgata cgcttgatca gttcaaagtc ttcctcccgt ttcaaccacg cgacgatatt
     1021 caaaccggct tcgggaacct gcaaagtgaa acggtcacca agcaattcat tgaattgttt
     1081 aatgaagaaa tcgcggcgct cggcatagat ctttcgcatc cgtttgatgt gacttagaaa
     1141 gaaaccttca gtaatgaaac gcgccagtgt cgcctggtcg atgggagacg agtgttgatc
     1201 catcgcactg cggattttga ctaacgaatc
//
LOCUS       DATCGC010001706         1289 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_422381, whole genome shotgun sequence.
ACCESSION   DATCGC010001706 DATCGC010000000
VERSION     DATCGC010001706.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1289)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1289)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1289
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_422381"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..413
                     /locus_tag="VIJ87_16295"
     CDS             <1..413
                     /locus_tag="VIJ87_16295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445993.1"
                     /translation="FGNPCIHKHGIHSVIEAGDNNKEVAYLVKREDERNMSDDKNRGG
                     ASMAPIDKGRASVSPEVSEPATDDRLTYQIEAAQILLAIRDSAFDSNDQKLALALGRS
                     SEEIAEWLNGEGNIDSDALLKAKALATKRDVELA"
     gene            683..844
                     /locus_tag="VIJ87_16300"
     CDS             683..844
                     /locus_tag="VIJ87_16300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445994.1"
                     /translation="MKKVGVVSLILMLTSGCVVVGGYSSERGWYLWPGTIVIFLVMAV
                     IFLLLRRRG"
     gene            complement(950..>1289)
                     /locus_tag="VIJ87_16305"
     CDS             complement(950..>1289)
                     /locus_tag="VIJ87_16305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445995.1"
                     /translation="DTDGNPDTQPDPSWLPFIVTPSHPEYPAARTTVGASVLGFYTVW
                     FGTDQFPLQFKGLNGIVRNYSSVNEIHAEEGNARVWGGMHFRNSTEVGTAVGSKVGKY
                     TATHLLKPLD"
BASE COUNT          312 a          294 c          352 g          331 t
ORIGIN      
        1 gctttggtaa cccttgcatc cataagcacg gcattcattc agtgattgaa gctggggata
       61 acaataagga ggttgcttat ctagtgaagc gcgaggatga gaggaatatg tcggatgata
      121 agaatcgagg aggggcttcc atggctccca tcgacaaggg ccgagcttcg gtttcacccg
      181 aggtgtctga gcctgctact gacgatcgac taacttatca aatcgaggcg gcgcagattc
      241 tgctggcgat acgcgactcc gcgtttgact ccaatgatca aaagcttgcc ctggcactcg
      301 gccggtccag cgaggaaatt gctgaatggc ttaacggtga agggaacatc gatagcgacg
      361 ctttgctgaa agccaaggcg cttgccacga agcgtgatgt tgaactcgca taagtctgtg
      421 atttctccac cgcaaccttt ttgctttgca gaattttaat gggcactcgt tttgaatgaa
      481 ttcaggcaag atatctgatg cttaatactt atcgttttag tttacagttc agacgatttt
      541 ctcaaaggat gatcgaaaca agggagggtg aacatggcag acgctggccc acgtttccgc
      601 cgtccacttg attgaagaac gaaccgcagg acttgtttac agattaagag cgcgaagaac
      661 aaaatcgcgc ctggaggcat ttgtgaaaaa agttggagtt gtttcactga tcctgatgct
      721 tacttcagga tgcgtggttg tcggtggtta cagcagcgaa cgaggatggt atttgtggcc
      781 aggaacgatt gttatcttcc tggtgatggc cgtcatcttc ctactgctca ggcggcgagg
      841 atgagttttg ccagagatct aaacctcggc ggcttttgaa gcggcgcttt aatcgcggat
      901 aggtcctata actctatagg acctattcct attagcattc actcttcaac taatcgagtg
      961 gcttaagaag atgtgtcgcc gtgtacttac ctactttgct gccgacagcg gtaccgacct
     1021 cggtactgtt gcgaaagtgc atccctcccc acacgcgagc gttaccttcc tctgcatgaa
     1081 tctcattgac acttgagtag ttgcggacta tgccgttaag gcccttgaac tgtaaaggaa
     1141 actgatcggt gccgaaccaa acagtgtaga accccagcac actcgctccg actgtggtgc
     1201 gagctgcggg atattccggg tgggatggag tgactatgaa tggtagccag gaaggatccg
     1261 gttgagtgtc ggggttgcca tcagtatcg
//
LOCUS       DATCGC010001707         1738 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_27733, whole genome shotgun sequence.
ACCESSION   DATCGC010001707 DATCGC010000000
VERSION     DATCGC010001707.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1738)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1738)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1738
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27733"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1738)
                     /locus_tag="VIJ87_16310"
     CDS             complement(<1..>1738)
                     /locus_tag="VIJ87_16310"
                     /inference="COORDINATES: protein motif:HMM:NF017722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004062 - aryl sulfotransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase"
                     /protein_id="HEY5445996.1"
                     /translation="GTYSNDYLVDRGFENPQTGEIILPVYGLYDGYANVVGLTYRFLD
                     GSSKRANITIRTATFNDPCGYDHPTYLQHRTRALSYDYILVKGGCSDFSPAIVDTDGA
                     LRWVGTAGFSSNAAGFFDNAVYLAHGTKLYRIDLDGAFTEVGDYSGIGITFFHHNIDT
                     GKVGIILDANTTTHYNSVNIEVDASGRVLKTWNLADIISSAMRAGGDDPSQFVYQTPN
                     DWFHNNSVAYNRADNSIIISSRENFLICIDYETSAIKWILGDPTKKWYRFQSLRRFAL
                     TLAPVSLPPIGQHSVSVTFDQNILVFDNGQNSTFQEPAGTERTYSTPRKYKLDLNARI
                     ATEIWNFDLGQSLWCPFCGSVYEDAPFNYLINFTFVDGVRDPGSLAQWIGLNEGGETA
                     FRYQYHSTPGCTVSFNAIPLHLENTKFPAVGPLPQNLSTRGTVSIGDNVLIGGFIITG
                     PEPKTIVLRALGPSLGSFGLSHTVRDPVLRVYNSSRTLIATNDNWQSDPHNADIQKDG
                     LAPANLLESATLQTLAPGAYTVIVTGKDSTPGTGLVELYDLSPRSNSNLVNMSTRGSV
                     GTDDDVLISGFIV"
BASE COUNT          439 a          438 c          457 g          404 t
ORIGIN      
        1 acgataaaac cactgataag cacatcatcg tccgtgccga ccgaaccacg ggtgctcatg
       61 ttgaccaagt tggagttgga tcgcggcgag agatcgtaaa gctcgaccaa gccagtgccc
      121 ggagtcgaat ctttgccagt gactatcacg gtatacgcgc cgggtgccag ggtctgtaaa
      181 gtggccgact ccaatagatt ggcaggcgcg agtccatcct tctggatgtc ggcgttgtga
      241 ggatcgcttt gccagttgtc attggttgca ataagagtac gagaagagtt atacaccctg
      301 agaactgggt ccctgacagt gtgggaaagc ccgaagctac ccagcgatgg cccgagcgcg
      361 cgaagcacta tcgtcttggg ttcgggtccg gtaatgatga agccaccaat cagaacgttg
      421 tcaccgatgg aaactgttcc gcgcgtggaa agattctgcg gcagaggacc cactgccgga
      481 aacttggtgt tttccagatg aagaggaata gcgttaaagg acacggtaca acccggcgta
      541 ctgtggtatt gatagcgaaa agccgtctca ccgccctcgt ttaagccgat ccactgcgcc
      601 aaacttccgg ggtctctgac accatcgaca aatgtaaagt tgatgaggta gttgaatggc
      661 gcatcctcat agacactccc gcagaacggg caccacaaac tttgtcccaa gtcgaaattc
      721 cagatttccg tcgcgattct tgcgttcaaa tctaacttat acttacgagg ggttgaatag
      781 gtacgctccg tacccgctgg ctcctgaaag gtgctgtttt gtccgttgtc aaacaccaag
      841 atgttctggt caaacgtgac ggagacagaa tgttgcccga tcgggggcag gctgacgggc
      901 gcaagcgtga gcgcaaaccg cctcaaagac tggaatcggt accacttttt ggttggatct
      961 cccaagatcc actttatcgc actggtttca taatcgatgc agatgagaaa attttcccgg
     1021 ctcgaaataa taatagagtt atccgcccga ttgtaagcca cggagttgtt atggaaccag
     1081 tcgtttggcg tctggtaaac aaactgactg ggatcatctc ctccggccct catggcggag
     1141 ctgataatat cggccaggtt ccacgtcttc aaaaccctgc ctgaagcgtc cacttcaatg
     1201 ttcaccgagt tgtagtgtgt tgtggtattg gcgtcgagga taattccaac tttgccagtg
     1261 tcgatattgt gatgaaaaaa agtaatcccg ataccgctgt aatcgccaac ctcggtgaag
     1321 gcgccgtcga gatcgattcg atacagcttc gtaccatgag ccagataaac agcgttatca
     1381 aaaaagccag ccgcattact cgaaaagcca gccgttccaa cccatcgcag cgcaccgtcc
     1441 gtatcgacaa tggcagggga gaaatcgctg catcctccct taaccaggat gtagtcgtaa
     1501 ctcaaagccc tagttctgtg ttgtaggtat gtcggatgat cgtatccgca cgggtcgtta
     1561 aaggtggcgg tcctgattgt gatgttcgct cgctttgaag aaccgtcgag aaaccgatac
     1621 gtcaagccaa ccacattggc gtaaccgtcg tacagtccat agactggcaa aatgatttca
     1681 ccggtttgag ggttttcaaa accccggtca acaaggtagt cgttggaata agtgcctg
//
LOCUS       DATCGC010001708         2384 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_91942, whole genome shotgun sequence.
ACCESSION   DATCGC010001708 DATCGC010000000
VERSION     DATCGC010001708.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2384)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2384)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2384
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91942"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            120..701
                     /locus_tag="VIJ87_16315"
     CDS             120..701
                     /locus_tag="VIJ87_16315"
                     /inference="COORDINATES: protein motif:HMM:NF014068.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase
                     domain-containing protein"
                     /protein_id="HEY5445997.1"
                     /translation="MEKRLDGKKVAILVADGFEQVELTAPKEALEAAGATTEIVSPAD
                     HDVQGWNHDEKADTFHVDMPLNRARSDDYDALLLPGGVRNPDQLRQLTRALEFVDGFF
                     ATGKPVAAICHASWTLIEAGVVDGRKITSWPSLKTDLQNAGADWVDRDVVVDKGLVSS
                     RKPADLPVFNKKMIEEFAEGRRQSRPTLLRRVK"
     gene            964..>2384
                     /locus_tag="VIJ87_16320"
     CDS             964..>2384
                     /locus_tag="VIJ87_16320"
                     /inference="COORDINATES: protein motif:HMM:NF027814.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5445998.1"
                     /translation="MNRRTLLLVVLAILSLVSVFIVSATLANQESSANPLTGNWAAAS
                     PSNDGYVRKAYFNLKQDGEKITGTIRSTQFFYKITKSTGGPAGFTLEASMMDGRSERK
                     VTYEGKLIGNELQIGRRNRPDQPISFQMAQRAPEGEGALPARVEPPALHKVKYNGLAK
                     TPPMGWNSWNKFAGRIDDATVRGIADAMAKNGMKDAGYTYINIDDTWEGYRDAQGNIT
                     TNKKFPDMKALSDYVHKKGLKLGIYSSPGPNTCAGYEGTYGHEEQDARTFAEWGIDYL
                     KYDWCGARTLFSDEEMPAVYQKMGDALLKTGRPIVYSLCQYGRQDVWKWGADVGGNLW
                     RTTGDIRDTWDSMTNIGFRQNELAPFAKPGHWNDPDMLEIGNGGMTDTEYRTHLSLWA
                     MLAAPLLAGNDLRAMSPATLEILTNREVIAIDQDKKGQQGKQVWKSGDQEIWTRPLSG
                     GATAVAVFNRGKDQATVYVKWAEL"
BASE COUNT          649 a          588 c          650 g          497 t
ORIGIN      
        1 ccccgggcgt actacaacca ggaagccatt acccagccgc tacgtcgacc gaccttcgac
       61 gacattgtcc cacccggtcg ctgatgaagc ccagaaggga agcacaagga ggaaacctca
      121 tggagaagag actcgacgga aagaaagtag cgattttggt agcagatgga tttgagcaag
      181 ttgaattgac agcaccgaaa gaagcgttgg aagccgctgg cgcaacgaca gagattgtgt
      241 caccggctga ccatgacgtt cagggctgga accacgatga aaaggcagac acattccacg
      301 tagacatgcc actcaatcgc gcgaggtctg acgactacga tgcgttgcta ctgcctggcg
      361 gagtcagaaa tccagatcaa cttcgccagc tcacccgagc actagaattt gttgatggat
      421 ttttcgccac aggtaaaccg gtggcggcaa tctgtcacgc gtcatggact ttgattgaag
      481 ctggtgtggt cgatggtcgg aagattactt catggccgtc actcaaaact gacttacaaa
      541 atgcgggcgc tgactgggtc gatcgcgacg ttgttgtgga taaaggcctc gtctcaagtc
      601 ggaagcccgc tgatttgccg gttttcaaca agaagatgat tgaagagttc gctgaaggaa
      661 gacgtcagag tagacccacg ctactgaggc gggtgaagta aagagggtct cagatctcag
      721 atttaagatc tcagattaaa ggacccgaag tacaacggcg aatctcagat tgaaagttcc
      781 gaagttttga acggcgaatc gttcgcgcac cattttgaga tcttaaatct gagatctgag
      841 atcctccctt ctttcttgaa ccaaaaaaac caatttcaat ttagcaattc tgtggtaaat
      901 agtccgcagc tttcacagat ctcaatccgc gaaatctgcg gacaaacttt gcggagtcca
      961 taaatgaatc gcagaaccct gttgctagtt gtactggcaa tcctaagcct cgtttcagtt
     1021 ttcatcgtct cagctacgct tgccaaccaa gagtcatcag cgaacccgct gaccggcaac
     1081 tgggccgctg cgtctccaag taatgatggc tacgttcgca aagcttattt caacctgaaa
     1141 caagacggag agaagataac gggcaccatt cgctccacac agttcttcta caaaatcacg
     1201 aagagcaccg gaggacctgc tggattcact ctcgaagcga gcatgatgga tgggcgcagc
     1261 gaacgaaagg tcacttacga aggcaagctc atcggcaacg agctacagat aggtcgtcgc
     1321 aaccgacctg atcaaccgat cagttttcaa atggcccaac gtgcccccga aggcgaaggt
     1381 gcattgccgg cgcgtgttga gccgcctgcg cttcacaaag tcaaatacaa cggcctcgcg
     1441 aaaacaccac cgatggggtg gaacagttgg aacaagttcg ccgggcgcat tgacgatgca
     1501 actgtacgcg gcatcgctga cgctatggca aagaacggaa tgaaagacgc cggctacact
     1561 tacatcaata tcgacgatac gtgggaaggg tatcgcgacg cccagggaaa catcacgacg
     1621 aacaaaaagt ttcccgacat gaaggcgttg tctgactatg ttcacaagaa aggtctaaag
     1681 ctcggtatct attcttcgcc ggggccgaat acctgcgctg gttatgaagg aacctacggt
     1741 cacgaagaac aggatgcacg aaccttcgct gaatggggca tcgactatct taaatacgac
     1801 tggtgtggcg cgcgtacgtt gtttagcgac gaggaaatgc ctgcggtcta tcagaagatg
     1861 ggtgatgcct tgttgaaaac tggaagaccg atcgtttaca gcctttgcca gtatggacga
     1921 caggacgttt ggaagtgggg tgccgacgtt ggcggtaatc tctggcggac aacgggtgat
     1981 attcgcgaca cctgggactc gatgaccaac atcggctttc gtcagaatga actggcgccg
     2041 tttgcgaagc cgggacattg gaacgatcca gacatgcttg agatcggcaa cgggggcatg
     2101 acggatacgg aatatcgaac tcacctgagt ctctgggcga tgcttgccgc accacttctt
     2161 gcgggaaacg atttacgcgc gatgtctcct gctacgctcg agatcctcac aaacagggaa
     2221 gtgattgcga ttgatcaaga caagaagggc cagcaaggaa agcaagtttg gaaatcaggt
     2281 gatcaggaaa tctggacgcg accactttcc ggcggcgcaa cggcggttgc tgtattcaat
     2341 cgcggaaaag accaggcgac tgtttacgtg aaatgggccg aact
//
LOCUS       DATCGC010001709         1230 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_256784, whole genome shotgun sequence.
ACCESSION   DATCGC010001709 DATCGC010000000
VERSION     DATCGC010001709.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1230)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1230)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1230
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256784"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..824)
                     /locus_tag="VIJ87_16325"
     CDS             complement(<1..824)
                     /locus_tag="VIJ87_16325"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY5445999.1"
                     /translation="MSKPYPILFALFVILASFSIALASDDWTQFRGPNGTGVSETTGL
                     PTEFGPNKNVVWKTELPSGHSSPVLTRDRIFVTAHSNDKDKHKLFVICLDRQSGKILW
                     QREVPRSREGRLQNVNGPASPSPVTDGTNVYAFFQEFGLISFDGAGKERWKLPLGPFN
                     MFYGFGASPILVDDKLILPVDQDNPSSYLIAVDKKSGRLRWKVERPVVISGYSTPIVY
                     QPKQGAKQIIIPESFQLSAYSVEDGKRIWWVRGLACEMKSIASHDSEYLYINGWGFP"
BASE COUNT          332 a          287 c          307 g          304 t
ORIGIN      
        1 ggaaagcccc aaccattgat gtagagatac tctgagtcgt gactggcaat cgacttcatc
       61 tcgcacgcaa gaccacgaac ccaccaaatg cgtttgccat cctcaaccga gtaggccgat
      121 aactgaaacg attcaggaat aatgatctgt ttggcaccct gttttggttg atagacgatt
      181 ggagtcgagt agccagagat aacaaccggt cgctcaactt tccagcgcaa gcgaccgctc
      241 ttcttgtcga ctgcaatcag gtacgagctg ggattgtcct gatcaacagg cagaattagc
      301 ttgtcgtcga cgaggattgg cgaagcacca aatccataga acatattgaa aggtccaagc
      361 ggaagcttcc atcgctcctt gccagctccg tcaaacgaga taagaccaaa ctcttgaaag
      421 aacgcgtaga catttgtgcc gtcagtaacc ggactcggtg atgccggacc attcacattc
      481 tgaagccgac cttcacgcga ccgtggcacc tcacgttgcc agagaatctt tccggactgc
      541 cgatcgagac agattacaaa aagcttgtgc ttatctttgt cgttgctatg agctgtaaca
      601 aatatccgat cgcgcgtgag tacaggagat gagtggcccg agggcaattc agtcttccag
      661 acgacgttct tgtttggacc aaattcggtt ggtagtcccg ttgtttctga aacaccggtt
      721 ccatttggac cgcgaaactg ggtccagtcg tcgctggcta acgcaattga aaaggaagcg
      781 agtatgacga agagtgcgaa gagaatggga tacggttttg acatgttttg tttagcctgt
      841 ttttctattt gatggcgcgg cgcgcccatt attgatcgga ctgccaggga tgtcagcaaa
      901 acaaaaactt ggacttcgac tatttagtat ttcatccagg atttcgtcga gggtaggtta
      961 ggttagttcg cacgaatacc accaactgcc gggacggtgt caaactcaaa ctattatcag
     1021 ttcttgttcg tgcaagttcg tgtgatgcgc gtggatcgag tgttatgtcc gagagatcga
     1081 ctgatccacg aaatcacccg aaagaacact aaaaaaaagc ttcaagcaaa ttcgagtttt
     1141 gacacggact ccggggttgg tcgtatgggt cttttgtacc ctgaaaagct tgtaagttta
     1201 agaagaaata gatgacacaa ccgaaaatcc
//
LOCUS       DATCGC010001710         1164 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_359191, whole genome shotgun sequence.
ACCESSION   DATCGC010001710 DATCGC010000000
VERSION     DATCGC010001710.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1164)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1164)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1164
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_359191"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1164
                     /locus_tag="VIJ87_16330"
     CDS             <1..>1164
                     /locus_tag="VIJ87_16330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446000.1"
                     /translation="KTPTDQSFELIIRREVSATGRNKIFVNNQLATQALLRDLREFLV
                     DIHGQGDQQTLFNTDTHLELLDSFAGNSALREEVATAYENVSRLQREIDRLSHVEAEK
                     FQLVDTLNYQIEELERSQLTIGEDDNLDEEKRRLANVEKLTALCQSSYGRIYEDDESA
                     LARLRQATSELTELAEFESRFAEYLEGLESARAMLEDLSFSLRDFADKLEFSPARLAE
                     IEDRLAELSRLKRKYGGSIETALEHLARSQDRLRQIETSDEREKELRTDLKAATEGYL
                     DRANKLHKERVRSSKKFEQAVEKGIAEVAMENARFQVLVSDKLQFVEAAEKDEVNTKS
                     DVSLGDDKLKHIGHKGTDYVEFQFSANPGEELKPLARVASGGEASRLMLVLKTV"
BASE COUNT          320 a          277 c          324 g          243 t
ORIGIN      
        1 aagacgccca ccgaccaatc gtttgagctg atcattcgtc gtgaagtctc ggcaacgggt
       61 cgtaacaaga tcttcgttaa caaccaactg gccacgcagg cactacttcg cgacctgcgc
      121 gaattcctgg tggacattca cggccagggc gaccagcaaa cactcttcaa taccgacacg
      181 cacctcgagc tactcgattc gtttgccgga aattcagcgc tacgtgaaga agtcgcaact
      241 gcatatgaaa acgtgagcag actgcaacgc gagatcgaca ggctgagcca tgttgaagca
      301 gaaaagtttc aactcgtcga cacgctgaat tatcagatcg aggagctcga gcgctcacaa
      361 ttgacgattg gtgaagacga caacctggat gaagagaaac gtcgactggc gaatgttgag
      421 aaactcacag cgctctgcca atcaagctac ggacgaattt acgaagacga cgagtcagcg
      481 ctcgcgcgtc tgcggcaggc gacaagtgaa ttgactgagc tcgctgagtt cgaatcacgt
      541 ttcgccgagt acctcgaagg ccttgaatcg gctcgcgcga tgcttgagga cctctcgttt
      601 tctctgcgcg actttgccga taagctcgag ttttcacctg cgcgcctggc agagattgaa
      661 gatcgattag cggagttgtc tcgtcttaag cgaaagtacg gaggttcgat tgaaactgcg
      721 ctcgaacacc tcgcccgctc gcaagatcgt ttaagacaaa ttgaaacgtc tgacgaacgc
      781 gagaaagaat tgagaacaga tttgaaggca gcgacggaag gctatctcga tcgagcaaac
      841 aaactgcata aggaacgggt tcgctcatcg aagaagtttg agcaagcggt tgaaaaagga
      901 attgcggaag tggcgatgga gaacgcgcgg ttccaggtac tggtgtcaga taaacttcag
      961 tttgtcgaag ccgcagagaa ggacgaggta aacactaaga gtgacgtttc cttaggcgac
     1021 gacaagctaa agcatatcgg acataagggc accgattacg ttgagtttca gttctctgca
     1081 aatccgggag aagaactaaa gccgttggcg cgtgtcgcgt caggtggtga agcatcgcgt
     1141 ttgatgttgg ttttgaaaac ggtg
//
LOCUS       DATCGC010001711         1249 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_458208, whole genome shotgun sequence.
ACCESSION   DATCGC010001711 DATCGC010000000
VERSION     DATCGC010001711.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1249)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1249)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1249
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_458208"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..277)
                     /locus_tag="VIJ87_16335"
     CDS             complement(<1..277)
                     /locus_tag="VIJ87_16335"
                     /inference="COORDINATES: protein motif:HMM:NF019126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HEY5446001.1"
                     /translation="MGTPYLGEIKIISWNFAPQGWAFCNGQFLPINQNQALFSILGTT
                     YGGNGQTTFALPDLRGRTPIYTGQGFVLGEKGGETAHTLTLPELAAHT"
     gene            complement(287..796)
                     /locus_tag="VIJ87_16340"
     CDS             complement(287..796)
                     /locus_tag="VIJ87_16340"
                     /inference="COORDINATES: protein motif:HMM:NF019126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HEY5446002.1"
                     /translation="MSNPYVGEIRMFGGNFAPAGWAFCQGQLMPISENETLFNLIGTT
                     YGGDGQETFALPDLQGRVPMHVGSNFQQGEKGGVESVTLTVNQIPSHNHVPTGSTANG
                     NSTTPANAIWANFPDGAAYNAAIGALPASNLNAQALGASGGSQPHDNMMPYLCVSFII
                     SLFGIFPHQ"
     gene            complement(837..1139)
                     /locus_tag="VIJ87_16345"
     CDS             complement(837..1139)
                     /locus_tag="VIJ87_16345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446003.1"
                     /translation="MTEALTQEAFADQIDTKFTLVVEGLDPIELKLSRVSDLTVSNGA
                     EGFSIVFKGSGEFVLRQSTYRLEHDVMGAFEILLVPIGKDEQGVDYEAVFNRLKAR"
BASE COUNT          309 a          341 c          293 g          306 t
ORIGIN      
        1 gagtgtgagc ggccagctca ggaagagtga gcgtgtgcgc agtctctcca cctttctcac
       61 ccaaaacaaa cccctgtcct gtgtatatcg gagttcgccc gcgaagatcc ggaagcgcaa
      121 aggtagtttg accgttgcca ccgtaagtcg tacccaaaat cgagaacagt gcctggtttt
      181 gatttattgg caaaaactgc ccgttgcaga aggcccatcc ctggggagcg aaattccacg
      241 aaataatttt aatttcacct aaatatggtg tgcccatgtc gcctccttat tgatgcggga
      301 agatcccgaa gagagaaatg atgaagctga cgcacaggta aggcatcatg ttgtcgtgcg
      361 gctgagagcc tccactggca cccagagcct gcgcatttag gttcgacgcc ggtaatgcac
      421 cgatagcagc gttgtaagcg gcgccgtcgg gaaagttggc ccaaatggca ttggccggag
      481 tcgtcgaatt cccattggca gtgctgcccg tcggcacatg gttgtgcgag ggaatctggt
      541 ttaccgtcag cgtaacactc tcgactcctc ccttttctcc ctgttgaaaa ttgctcccca
      601 cgtgcattgg aacccgacct tgaagatcag gaagcgcaaa agtctcttgt ccatcaccgc
      661 catacgtcgt cccgatgagg ttaaagagcg tctcgttttc cgaaatcggc attagctgcc
      721 cctgacaaaa agcccagccg gcgggagcaa aattgccgcc aaacattcgg atctctccga
      781 cataaggatt actcatactt actcctctcg tatttctgaa gcctgacgta aggtatctat
      841 cgggctttca gtcgattaaa aacggcctcg tagtcaactc cttgctcgtc ttttccgatg
      901 ggcactaaca aaatttcaaa cgcgcccatc acatcgtgtt caagtcggta agtgctctgt
      961 cgtaagacaa actcgccaga acctttgaaa acgatcgaaa agccttctgc cccgttgctt
     1021 acagtcaaat ctgaaactcg gctcagtttg agttcaattg gatctaatcc ctcaacaaca
     1081 agcgtgaact tcgtatcgat ctgatcggca aacgcttctt gagtaagcgc ttcagtcacg
     1141 agctatacct gcctgacttg tgtcttcagc acccttgctc gactttggag accattccat
     1201 tgcgaggtaa aaaccttctt cacgaatctc tttgaaacca aatcgcgag
//
LOCUS       DATCGC010001712         1150 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_389439, whole genome shotgun sequence.
ACCESSION   DATCGC010001712 DATCGC010000000
VERSION     DATCGC010001712.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1150)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1150)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1150
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_389439"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..272)
                     /locus_tag="VIJ87_16350"
     CDS             complement(<1..272)
                     /locus_tag="VIJ87_16350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446004.1"
                     /translation="MQTRKTFRESGNALICALVAILIVSLIGANVLSNSTTRLNVSSN
                     QVRAWKEALEAAEAGGDMAFSELRKQTSTDGTVRASQWSGWTTSGTT"
     gene            complement(285..926)
                     /locus_tag="VIJ87_16355"
     CDS             complement(285..926)
                     /locus_tag="VIJ87_16355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446005.1"
                     /translation="MRLGSSLKTRAFTLAEMLIAMGIAVAIIAFTLTTSVGLQKSFYS
                     IDNYFGTHMQQIRIVDYLARDVRRGLSVVSSADKHTVTVNLPRYIIQAGDADATGSNI
                     GTPRAPSLAVVNRDYNVNYLPTSTSSPSVVTYTISGSSILRTEDNVITTIASSTDNLL
                     PETVDIELANTEYTTTAITFKPLSVADRTGTVVYSTAYLRNRRRAIPTPSPTP"
     gene            complement(923..>1150)
                     /locus_tag="VIJ87_16360"
     CDS             complement(923..>1150)
                     /locus_tag="VIJ87_16360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446006.1"
                     /translation="SQKATEGVKISKYPTPNGVTQFTRSSGGTVVNDSVATDLGTQLV
                     KVDVAVSWTMTLGGRARTEQTSSIVSNGTKK"
BASE COUNT          254 a          284 c          308 g          304 t
ORIGIN      
        1 gtggttccgg aagtggtcca ccctgaccat tgactcgcgc gaactgttcc gtccgtggag
       61 gtctgctttc ttaactcgga gaatgccata tcaccgccag cttccgcggc ttccagcgct
      121 tccttccacg cgcggacctg attggacgac acgttcaagc gtgtcgtaga gttacttaag
      181 acgtttgcgc cgatgagcga cacgattaga atcgcgacta gtgcacaaat taaagcgttg
      241 cccgattctc ggaaggtttt cctggtttgc atattctctt agttctatgg cgttgggctg
      301 ggggttggga tcgcacgccg ccgatttctc aggtaagcag tagaataaac aaccgtacca
      361 gttcgatccg ccacggatag cggcttaaaa gtaatcgccg tggtggtata ctcagtattc
      421 gctaattcaa tatcgaccgt ttctggaagc agattgtcag tgctcgaggc aatcgtggta
      481 ataacgttat cttctgtgcg caggattgaa gagccgctaa ttgtatatgt aacaacgctg
      541 ggggatgacg tggacgtcgg aaggtagttt acattataat ctctattaac gactgcgaga
      601 gagggtgcgc gcggagttcc aatgtttgat ccggttgcgt cagcatctcc ggcctgaatg
      661 atatatctgg gaaggttcac ggtgacggtg tgcttgtcgg cagacgagac aacgctcaag
      721 cctcgtctga catctcgagc caggtaatcc acgatacgga tctgctgcat gtgcgttcca
      781 aaatagttat caattgaata aaaacttttc tgtaacccga ctgaggtggt cagcgtgaag
      841 gcaatgatgg ccacagcaat ccccatcgcg attagcattt ctgcaagcgt aaacgctcga
      901 gtcttcagtg aggatccaag tctcatttct ttgttccgtt tgaaacaatg ctgcttgtct
      961 gttcggttcg ggcacgaccg cccagcgtca tcgtccacga aacagcgacg tcgactttca
     1021 ctaattgcgt gcccagatcg gttgctaccg agtcgttgac gacggtgccg ccagaagacc
     1081 gggtaaattg tgtcactccg ttcggggtcg ggtatttgct gattttcact ccctcggtcg
     1141 ccttttgcga
//
LOCUS       DATCGC010001713         1746 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_490352, whole genome shotgun sequence.
ACCESSION   DATCGC010001713 DATCGC010000000
VERSION     DATCGC010001713.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1746)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1746)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1746
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_490352"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..256
                     /locus_tag="VIJ87_16365"
     CDS             <1..256
                     /locus_tag="VIJ87_16365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446007.1"
                     /translation="DSVLGQADTSATAKSGYIFDIVDLSGTGASAQYGASAVPVTTSG
                     VSQTGTRRFAMTHVGVLRGDSTLTAPTTVATIETINPLGN"
     gene            335..>1746
                     /locus_tag="VIJ87_16370"
     CDS             335..>1746
                     /locus_tag="VIJ87_16370"
                     /inference="COORDINATES: protein motif:HMM:NF021635.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-pyruvoyl-tetrahydropterin synthase-related
                     protein"
                     /protein_id="HEY5446008.1"
                     /translation="MSSGALQIRLATVSNRVVGSKRDFLVVILVAIAVMLPAMVWGIP
                     SNRDLSNHFRFTLPFYDALRSGVLYPGWLAESNGGYGDASFRFYPPALYYLLALMRAI
                     TGGWYVATLVTFTLISVVGSVGLYLWGSTILPSKNAMWASILFALAPYHLNQYYQATM
                     LAEFAGTALLPFAFYFVERICRGGSRRDAAGLAISYAALLLTHLPLAVIGSIALFVYA
                     LVRLTRHQWVKTNFYLGLGILLGLVASSRYWTNVLAEQTWIRADNILPDPSVDYRVNF
                     VLSTFSPDNLNVWWMNILLLATVAMLWPAITLAWSHKTKPEVQQPTLSGLKAPAVLLL
                     LTLLMMTPVTRSVWSLLKTLQQTQFPWRWLAITSMVAPLLIAAAIPYWETLAKNKKRP
                     LAILALGSVAISIMFSASHTVREAKNLNAREFERTLQEIPGSPGVSQWWPSWVNEPVQ
                     KMNSHVEAGDRSVEVQSWEP"
BASE COUNT          370 a          480 c          435 g          461 t
ORIGIN      
        1 agactcagtc ctgggacaag ctgatacctc agcgacagcc aagagcggat acatcttcga
       61 cattgtggat ctaagtggaa ccggtgcttc agcacagtac ggagctagtg ccgtaccggt
      121 tacaacctcg ggtgtttcgc agacaggtac acggcgcttt gcaatgactc acgtgggcgt
      181 ccttcgcggc gattcaacac tcactgcacc aaccactgtc gctaccatcg aaaccatcaa
      241 cccacttggc aactaaccag ggcttccaac ttatctctca ccccaggggc ggagcattgc
      301 atactctgcc ctttccgttt tgatactcaa cacaatgagc tcgggcgcgc ttcaaattcg
      361 attagcaaca gtttcgaatc gtgtcgttgg cagcaaacgg gatttcttgg tagttatcct
      421 cgttgccatc gccgtcatgc tgcctgcgat ggtgtgggga atcccatcga atcgagacct
      481 ctccaatcat tttcgtttta cccttccctt ctacgatgcg ctgcgttcag gcgtgctata
      541 tcccggttgg ttagctgagt ccaacggcgg ttacggtgac gccagtttca ggttttaccc
      601 gccagctctc tactacctgc tggctttgat gcgagcgata actggtggct ggtacgtcgc
      661 cacgcttgtt acattcactc tgatcagtgt agttggttcg gtcggactct acctgtgggg
      721 cagcactatt cttccgtcga agaatgctat gtgggcaagc attctttttg ctctcgcccc
      781 ttatcatctc aaccagtatt accaggccac gatgcttgca gagtttgctg gtacggccct
      841 gcttcctttt gctttctact tcgtcgagcg aatttgtcga ggaggatcga gaagagacgc
      901 tgcaggcctg gcgatatcct atgcggcttt gctgctcact catctcccgt tggctgtcat
      961 tggttctata gccctcttcg tctacgcgtt ggtacggctt acacgacatc agtgggttaa
     1021 gacgaacttc tacctgggtc tcggcattct gctcggactt gttgccagct ctcgatattg
     1081 gactaacgtt ttggcagagc aaacctggat aagagcagac aacatcctgc ccgacccttc
     1141 cgttgattat cgtgtgaact tcgttctttc aaccttctca cctgacaatc tgaatgtttg
     1201 gtggatgaac atcctcttgc tggccaccgt ggcaatgctt tggccggcta tcaccttagc
     1261 ttggtcgcac aaaacgaagc ccgaagtgca acagccaaca ctgtcggggt tgaaggctcc
     1321 tgccgttctt cttttgctta cgcttctgat gatgacgccg gtaacgcgat cagtttggag
     1381 cttgctaaaa acgctacaac aaacacagtt cccctggcgt tggctcgcaa ttacctcgat
     1441 ggtcgcacca ctccttatcg cggcagcaat tccgtactgg gagactttgg caaaaaacaa
     1501 aaagaggccg cttgctatac tcgcccttgg atcggtcgcc atatcgatca tgttttcggc
     1561 ttcccacact gtgcgtgaag caaagaatct aaatgcacga gagtttgaaa gaaccctgca
     1621 agagattccc ggttcgccag gcgtttcgca gtggtggccc agctgggtca atgagccggt
     1681 tcaaaagatg aactcgcacg ttgaagctgg agatcgaagc gttgaggttc agagttggga
     1741 gccaga
//
LOCUS       DATCGC010001714         1487 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_422441, whole genome shotgun sequence.
ACCESSION   DATCGC010001714 DATCGC010000000
VERSION     DATCGC010001714.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1487)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1487)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1487
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_422441"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            219..977
                     /locus_tag="VIJ87_16375"
     CDS             219..977
                     /locus_tag="VIJ87_16375"
                     /inference="COORDINATES: protein motif:HMM:NF024946.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HEY5446009.1"
                     /translation="MVRISVSAQLPFYTDDADTTPKGKFHLEIFDEHDILQRSSYPTK
                     RQNTLVFTLDYGITDKLEVGVNAPMITLSNSRVAIPRNLNGVGDTQFGLKYNFLAERE
                     KSKLPALAVVFYVEAPTGNPRRQLGSGLTDYWLYGIAQKSLTKKTKGRLNGGILFSGN
                     SSTGLIGIRTGRGHIYTGDASLVRDFSERLKLGVEVFGAVTGSFILDRGQLTTQIGGN
                     YALTKKLSLSFAVIGGRFAASPRAGAHLGFAYDF"
     gene            complement(974..>1487)
                     /locus_tag="VIJ87_16380"
     CDS             complement(974..>1487)
                     /locus_tag="VIJ87_16380"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEY5446010.1"
                     /translation="LCKQLRAISQIPIIILSAKGEERIKVTALDIGADDFVTKPFGID
                     ELLARLRAALRRAQSQPANATEQKTLSEGDFHIELEARNVTVAGREIHLTPKEFELLV
                     YFLKHSGKVLTHRTLLAAVWGGDYVEQDQYLRVFVGNLRKKLETNPAAPKYILTEPWV
                     GYRFSPTEAS"
BASE COUNT          358 a          399 c          359 g          371 t
ORIGIN      
        1 gaagagcgcg cccgttacaa ttaaggcgtc actgaagggt gacgtagtta gggacccaca
       61 atcaagaatc aacagtcgga aagcccgcta cggcttctgc tcctgtctcc tgccttctgc
      121 cttctgccgc tgctcctgcc cctgacttat gctagtctcc aatcccgatg catcggcacc
      181 cgttcagatc acttctcata gccgtcgcgc ttctgttcgt ggtccgaatc agtgtctcgg
      241 cacagcttcc tttctacacc gacgatgccg acacaacgcc aaagggaaaa tttcatctcg
      301 agatctttga cgagcacgac attcttcagc gttcctctta cccaaccaag cgacaaaaca
      361 cacttgtctt cacgctcgac tacggaatca ctgacaagct ggaagtaggc gtcaatgctc
      421 caatgattac gttgagtaat tcacgagtgg caattccgag aaaccttaac ggcgttggtg
      481 atacccagtt tggactcaag tacaactttc tagccgagcg cgaaaaatcc aaactgcccg
      541 cacttgcggt tgtcttttac gtcgaggcac cgacgggaaa ccctagaaga caacttggct
      601 ccggattaac tgattattgg ctctacggaa tcgcacagaa atcgctgacg aagaaaacta
      661 aaggcaggct taacggtggg attctcttca gtggaaacag ttcgaccggt ttgattggca
      721 tacgcacagg acgaggccat atctataccg gcgacgcatc gctggtccga gacttttctg
      781 aaaggctcaa acttggtgtc gaagtgtttg gagcagtcac tggcagtttc attttagatc
      841 gcggccaact aacaactcag atcggtggca actacgcgct gactaaaaag ttgagcttgt
      901 cgtttgccgt catcggcgga cgcttcgccg cgagcccaag agccggcgcg catcttggtt
      961 ttgcctacga tttctaagac gcttcagttg gactgaaacg atagcccacc cagggttccg
     1021 tgagaatgta cttaggtgca gccgggttag tttccagttt cttcctcagg ttgccgacaa
     1081 agactcgtag atactggtcc tgttccacgt agtcgccacc ccaaacagca gcgagaagag
     1141 ttcgatgggt aagcactttt cctgagtgct tgagaaaata aacgagcagc tcaaactcct
     1201 taggcgtcag atgaatttcg cgtccggcaa ctgttacgtt tctggcttcg agctctatgt
     1261 gaaaatctcc ttcacttaag gttttctgtt cggttgcatt agcgggttgc gattgagccc
     1321 ttcgcagggc agcgcgcaat cgggcaagta gttcgtcaat tccaaatggc ttggttacaa
     1381 aatcgtctgc gccaatatcc agcgctgtga ccttgatcct ttcttcacct ttcgccgaca
     1441 gaatgattat cggaatctga gaaatcgccc gcagttgttt acaaagc
//
LOCUS       DATCGC010001715         1534 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_458275, whole genome shotgun sequence.
ACCESSION   DATCGC010001715 DATCGC010000000
VERSION     DATCGC010001715.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1534
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_458275"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..944
                     /locus_tag="VIJ87_16385"
     CDS             <1..944
                     /locus_tag="VIJ87_16385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446011.1"
                     /translation="RFKTGRNVTDDGLQLLHEFPAFKSWQGGEVKYGLMSFAGEPTSL
                     LIDGPFTGQGLSSLRGLDGVFGLNFFWHTTRLRGNDLRFLDGLSNLGYLGCHDELCND
                     EAMQHIAELPNLRMLMGQGTVATDEGFKSLGRSQTIEYFWGRECPNLRSEGFAALSEM
                     RALKGLAVSCKFVDDAGLAKLPDFPSLKELLPMDVSDDGFRHIGRCEQLDSLILMYCR
                     DTTDVATSHLLRMPNLKKYHAGYTLITDRSLEMLGRINSLEVLSFEGCKFISDQGIGL
                     LATLPNLREISIGGCPRVTRTGVTGFASSVRVNYDTR"
     gene            complement(990..>1534)
                     /locus_tag="VIJ87_16390"
     CDS             complement(990..>1534)
                     /locus_tag="VIJ87_16390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446012.1"
                     /translation="FEDRVQVCDFDGSELTSFADPAPLSDRIVEPSTKSNLIRFANSR
                     IGLAVLVLLLLVPGVILIVRHKSSSPPKSDEKAWTAERQDSIVSTAPTRKSHRYRRRI
                     AYAHKPVRRIQVTMARASTPRRIIPTRTTARVRSSPTPFSKQTVVLSEKKDSKLNVVF
                     KKTGNALKKTLSFLKKPFDL"
BASE COUNT          345 a          366 c          438 g          385 t
ORIGIN      
        1 gtcgttttaa gaccggccgt aacgtcacag atgacgggct tcaactgttg cacgagtttc
       61 cagccttcaa gtcgtggcaa ggtggcgaag ttaagtacgg attaatgtcc ttcgctggcg
      121 aaccaacaag ccttctgatc gatggtccat ttaccgggca aggactttcc agtctccgtg
      181 gtctcgacgg ggtttttggt ttgaatttct tttggcacac aacgcgtttg cgcggcaacg
      241 atctgcggtt cctcgacggc ctgtcgaacc tgggctatct gggttgccat gacgaactgt
      301 gcaacgacga agcaatgcag catattgcgg aacttccaaa ccttcgtatg ctgatgggcc
      361 agggcacggt cgcaactgat gagggcttta aatctctggg tcgatcacaa acgattgaat
      421 acttttgggg tcgcgagtgt ccaaatctga gatcagaagg attcgccgcc ctgtcggaga
      481 tgcgtgcatt gaaaggattg gcagttagtt gcaagtttgt ggacgatgca ggtctcgcga
      541 agttgcccga cttcccttct ctgaaagagt tgctgccgat ggacgtcagc gatgatggct
      601 ttcgtcacat cggccgttgt gaacaactcg attcgctgat cctgatgtac tgccgcgaca
      661 cgacggatgt ggcgacgagt catctcctga ggatgccaaa cctcaagaag tatcacgctg
      721 gttatacgtt gattacagat cgcagtttag agatgttggg tcgcataaat tctcttgagg
      781 tactgtcatt cgagggctgc aagttcatta gcgaccaggg gattggtttg ctggccacgt
      841 tgcccaacct tcgtgaaatc tcaatcgggg gctgcccgag agtaacgcga accggagtaa
      901 cagggtttgc aagcagcgtg cgagttaact acgacacacg gtgaccattt gtaggggccg
      961 ccactccgtg gccgcccctt cctattcaac tagagatcga atggtttctt gaggaagctt
     1021 agggtcttct tcaaggcgtt gccggttttc ttgaaaacca cgttaagttt tgagtctttc
     1081 ttttcagaca gcacaaccgt ttgtttgctg aaaggggtag gcgaagatct cacacgcgca
     1141 gtggtgcggg taggaatgat tcgacgtggt gtcgacgctc tggccattgt gacctgaatg
     1201 cgacggacag gtttatgagc gtaagcgatt cgtcttcgat agcggtggga tttacgagtg
     1261 ggtgcggtac ttacgatgga atcttggcgc tccgctgtcc aagccttctc atctgatttc
     1321 ggcggactcg aggatttgtg acggacaatc aagatcacac ctggcacgag cagcagcaaa
     1381 accaaaactg ccaaaccgat cctggagttc gcgaagcgaa taaggttaga tttcgtcgac
     1441 ggttccacga ttcggtcgga taggggagcg ggatccgcga atgacgtcag ttcgctacca
     1501 tcaaaatcgc agacctggac acggtcttca aacg
//
LOCUS       DATCGC010001716         1349 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_326608, whole genome shotgun sequence.
ACCESSION   DATCGC010001716 DATCGC010000000
VERSION     DATCGC010001716.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1349)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1349)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1349
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_326608"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..696
                     /locus_tag="VIJ87_16395"
     CDS             <1..696
                     /locus_tag="VIJ87_16395"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY5446013.1"
                     /translation="KMIQDGRARITTHKVNVADEDEMCAFAEEVVREHGRVTHVINNA
                     GVALAGSCLEVSLEDIRWLMDINFWGVVFGTKFFLPFLEKEQSAHIVNVSSLYGLIAP
                     PGQAAYSASKFAVRGFTEALRHELKGTNIAVSVVHPGGVKTNIANSARIGAGLKLSPE
                     ELQDRLDAVNLLLSHTTPEQAAEVIVKGIKGRNPRILIGRDARLLSLINRLFPCRYGD
                     VIDRIRGGLFSNT"
BASE COUNT          333 a          308 c          367 g          341 t
ORIGIN      
        1 aagatgatcc aggacggtcg agcaagaatt acaacgcaca aggttaacgt tgccgacgaa
       61 gatgaaatgt gtgcttttgc cgaggaagtg gtccgcgagc acgggcgggt cacgcacgtc
      121 atcaacaacg ctggcgttgc gctcgctggt tcctgtctgg aagtttcatt agaggacatc
      181 cgttggttga tggacattaa cttttggggc gttgttttcg gtacgaagtt ctttctaccg
      241 ttcctcgaaa aagagcaatc ggcccacatc gtcaatgttt ccagtttgta tggactgatc
      301 gcgccaccgg gtcaagccgc ctactccgcg agcaagttcg cggtgcgcgg gtttactgaa
      361 gcgcttcgcc acgagcttaa gggcacgaac atcgcggtct cagtcgtaca tccgggtggg
      421 gtaaaaacca atattgccaa cagcgctcgc atcggcgcag ggttgaagct aagtccagaa
      481 gagctgcaag acagattaga cgccgtaaac ctgttgctta gtcacacaac accggaacaa
      541 gccgcggaag ttattgtgaa aggtatcaaa ggacgcaatc cgagaatatt gataggccgt
      601 gacgcgcgtc tcttgagcct tatcaatcgg cttttcccgt gtcgatatgg agacgtgatt
      661 gatcgtatcc gcggcgggtt attcagtaat acttagagcg gactattttt ttgagttacg
      721 tgggcgagcc gctgaataca gctcagcatc gccgcaacca atgaaattga agtggaccac
      781 agatcaaatg gttccacccc gtcagggtgg catgtttata gactaggaac gacaaagcac
      841 cgcaccccgt taggagtgcc atgttgatct caaaatgaca aaggcctagc acccgtgctc
      901 atgagacatt gcactcctga cggagtgcgg gagtgtcgag ttttctgttt gctataaaca
      961 ttgcactcct gacggagtga atacttttcg cctcggtctt tcccgggcgc gctcaaaaaa
     1021 gattgttaga aaatcagatc tagagaacct gctacgtgac gtttcgggtt ctctcgttgt
     1081 taccgaggtt gctgatgaga agacttggat ggcttaagtg gagaatgcgg tccggcgatc
     1141 cgaacacttg tttgcgcgaa atgagattct ttctgagttt cgaaatcttc catatgcgtc
     1201 ggaagttgag gaagacttga ggagtagagg agagaactta agtattgtag aagtttcgta
     1261 ttgtctgaag ggtggagttt tctaattgca ctagttgtta gctagtgccc acttagtttt
     1321 gccactctat cactccgcgt cagcataac
//
LOCUS       DATCGC010001717         2388 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_58404, whole genome shotgun sequence.
ACCESSION   DATCGC010001717 DATCGC010000000
VERSION     DATCGC010001717.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2388)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2388)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2388
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58404"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2081)
                     /locus_tag="VIJ87_16400"
     CDS             complement(<1..2081)
                     /locus_tag="VIJ87_16400"
                     /inference="COORDINATES: protein motif:HMM:NF012931.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 20 glycosylhydrolase"
                     /protein_id="HEY5446014.1"
                     /translation="MKTNPSVALAIFAFLVASYCVTAQQPMSTQHNLMPVPSSLQFVA
                     GKFVVTESFKIATPGYSDARLQAAIDRFQKRLQGRTGLTFVPGVTSDATTAALLVQCS
                     APGQSIPSLEEDESYQIDVSTQQVQLSAQTAVGAMRGLETLLQLLSADRESYFFPAVK
                     IQDQPRFRWRGLLIDIGRHYEPPEVLKRNLDAMAAVKLNVFHWHLTEDQGFRIESKKF
                     PKLHQMGSDGLFYTQDQAREIVEYARQRGIRVVPEFDIPGHSTSWLVGHPELGSAPGP
                     YSIERGAGIFEPALDPTRDEVYKVLEGFLGEMAAIFPDAYMHIGGDENEGKQWDRNPS
                     IQAFMKAKGIKDNHALQAYFNQRLLKILEKLKKKMIGWDEILQPELPKTAVIHSWRGP
                     AALAEAAKKGYDGILSNGYYIDLSYPASQHYAADPIPANTTLTADERKHVLGGEATMW
                     GEYVSPETIDSRIWPRTAAIAERLWSPSTTTDVDDMYRRLAVVSVQLEELGLTHERNV
                     DVLLRRLVGSKDIGPLKILAALVEPVKEYRRGQEKPSTMLSPLTSLVDAARPDSEAAR
                     KFSKMVDDLLSDAPRFQMSATDLAITLSEWRSSEPSLNSLIDRSPALREAKPLAADLG
                     NLGTTGLEALSYLQRNVSPPNGWREGKLVLLDGITKPKAALEFPTVPGVKKLVIAAAE
                     QSELKNMSALD"
     gene            complement(2106..>2388)
                     /locus_tag="VIJ87_16405"
     CDS             complement(2106..>2388)
                     /locus_tag="VIJ87_16405"
                     /inference="COORDINATES: protein motif:HMM:NF016668.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ChbG/HpnK family deacetylase"
                     /protein_id="HEY5446015.1"
                     /translation="IVSIDPVVTSEGWVKFYADAVKNMQPGVTEFVVHIAHDDDEMKA
                     IAIDHPNWGAAWRERDFQYLTSNEFRKVLADNNVKLITWRDLRKAQFGE"
BASE COUNT          576 a          646 c          558 g          608 t
ORIGIN      
        1 caatcgagag cagacatatt cttcagctcc gattgctcag cggcagcaat tacaagcttc
       61 ttaactccag gaacagtagg aaactccaaa gccgcttttg gttttgtaat cccatccagc
      121 agcaccagct ttccttcacg ccaaccattc ggcggcgaga catttcgttg caaatacgac
      181 aacgcttcga gtcccgttgt tcccaagttg ccgagatcag cggcgagtgg tttcgcctca
      241 cgcaatgccg gtgagcgatc aatcagcgag ttcaaggaag gctcgctcga acgccattca
      301 ctcaacgtaa ttgccaaatc tgttgccgac atctgaaatc gaggtgcgtc agacaacaaa
      361 tcatcaacca tttttgaaaa cttacgcgct gcttcgctgt caggcctggc cgcatcaaca
      421 agactcgtca atggactcag catcgttgaa ggtttctctt gaccgcgacg atactctttc
      481 actggctcaa cgagcgccgc gaggatcttc aacggaccga tgtccttgct tccaactaac
      541 cttctcaaga gcacatcaac atttcgctcg tgcgttaagc ctaactcctc aagctgaaca
      601 ctaaccacag caagtcttcg atacatgtcg tcgacgtcgg ttgtggtact tggtgaccag
      661 agccgttcgg ctatggcagc agtgcgcggc caaattcgcg aatcaatagt ttcaggcgag
      721 acgtactctc cccacatcgt tgcttcgccg ccgagtacat gtttccgttc gtcggcagta
      781 agcgtggtgt tcgctggaat gggatcggcg gcgtaatgtt gcgaggcggg ataactcaaa
      841 tcgatatagt agccatttga gagaatgccg tcgtaaccct ttttcgcggc ttcggctaaa
      901 gcagcaggcc cgcgccacga atggataacg gcagtcttcg gtaattcagg ctgaagaatt
      961 tcatcccagc caatcatttt cttcttcagc ttctcaagaa tcttgagcag tcgttgattg
     1021 aagtaagcct ggagcgcgtg gttgtctttg attcccttgg ccttcatgaa agcttgaatg
     1081 cttggattac gatcccactg ctttccttcg ttttcatctc caccaatatg catgtaagca
     1141 tctggaaaga ttgcggccat ctcgcctaga aatccctcga gaactttgta gacctcgtcc
     1201 ctggttggat ccaatgccgg ctcaaagatc ccggccccac gttcaattga gtaaggtccc
     1261 ggagcgctgc ccagttccgg atgtccaact agccaactgg tgctatgacc gggaatatca
     1321 aactccggaa ctacacggat cccacgctga cgtgcatatt cgacaatctc tcgagcctga
     1381 tcttgtgtgt agaacagacc gtcggaaccc atctggtgca acttaggaaa cttcttactc
     1441 tctatccgga agccctggtc ttcagtaagg tgccaatgaa acacgtttag tttcactgcg
     1501 gccatcgcat cgagatttcg tttcaaaacc tcgggtggct cgtagtggcg tccgatgtca
     1561 atcaacaaac cccgccaacg aaaccttggc tgatcttgga ttttaactgc tggaaagaag
     1621 taactctcac gatcagcact caatagttgc aacagagtct caagaccacg cattgcacca
     1681 accgcggtct gcgcactcaa ttgcacttgc tgagttgaaa catcgatttg ataactctca
     1741 tcttcttcca gggaaggtat cgattgtccg ggagcgctgc attgaaccag cagggcagcc
     1801 gttgtcgcgt cgctcgttac tccaggaacg aatgtcaaac cagttcgacc ttgcaatcgc
     1861 ttttggaatc gatcgattgc ggcctgcaat ctcgcgtctg agtagccagg cgtcgcgatc
     1921 ttaaacgatt cggtaaccac aaactttcca gctacaaact gtagcgacga cggcacgggc
     1981 attaagttgt gctgcgtaga cattggttgt tgagcggtaa cgcaatagct agccacaagg
     2041 aatgcgaaga ttgccaacgc taccgaagga tttgttttca ttttttgagc tctaaaatgt
     2101 gggggtcact ctccgaactg cgctttacgg agatctctcc aggtgatcag tttgacgtta
     2161 ttgtcggcga gcactttgcg aaattcgttg ctggtcaaat attgaaaatc acgttctctc
     2221 caggcagctc cccaattcgg gtgatcgatt gctatcgcct tcatctcatc gtcgtcgtgg
     2281 gcaatgtgaa ccacaaattc ggtaactccc ggttgcatat tcttcacagc gtcagcataa
     2341 aactttaccc agccttcgct agttacaaca ggatcgatac tgacaatg
//
LOCUS       DATCGC010001718         2205 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_125132, whole genome shotgun sequence.
ACCESSION   DATCGC010001718 DATCGC010000000
VERSION     DATCGC010001718.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2205)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2205)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2205
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125132"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1310
                     /locus_tag="VIJ87_16410"
     CDS             <1..1310
                     /locus_tag="VIJ87_16410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446016.1"
                     /translation="LFRTQEAWGYLPFLRRYVPAIPFPFFIAMFGLVGRLVTEKKKRH
                     IGSATGAGLIMVFLIFSYFYLWTAAIAWLACLTVIWFLARPDGWLRTMRFLGITWLIT
                     ISGLIPYLLLLSHRATHTDQVQALVHTRSPDLFRPSELLSFLLLAMLVRLVLLGGVSL
                     RDPKILSLLSLLLLAPVVFNQQVITGISLQPFHYEEFVTSYCVLIAVVAALQILLSHS
                     RVAKLAKSDRGLFWIAIICIAYGVNSASGVSRAALEGNAQRDGTIPAAVSVKDLSRNE
                     RSLVFLSEPQQADVFPTLSSQPVLWAVHMGVFPGSEPKELKERFYQFLYYSGASQQNL
                     YELLTQKNHLSFVALFGYEREIPTFAETFRPVTEAEINAEAQLYGDYINSFNRTTAAR
                     FVLAYAVIPSDIPLGSSNISRWYEVTKVEERGSLTVYRLNLKP"
     gene            complement(1382..1726)
                     /locus_tag="VIJ87_16415"
     CDS             complement(1382..1726)
                     /locus_tag="VIJ87_16415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446017.1"
                     /translation="MKIQLVRLAHARSGDKGDTANVGLIALRDEFYPILVREVTSERV
                     KDHFKGICKGKVERFKLPNLQALNFLLHESLGGGGTLSLMTDAQGKTFSTALLRMMVE
                     ISDDEAKELGLG"
     gene            complement(1723..>2205)
                     /locus_tag="VIJ87_16420"
     CDS             complement(1723..>2205)
                     /locus_tag="VIJ87_16420"
                     /inference="COORDINATES: protein motif:HMM:NF018938.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyclic terpene utilization AtuA family protein"
                     /protein_id="HEY5446018.1"
                     /translation="AGKDRVRVYGIKGRQATDSLKVSISYTAGYKAVGTLVYSWPDAY
                     DKAQAADKILRARLDKLGLMFDQILTEFVGANATHGPLAGNPPSDAPEVQLRVGVRSS
                     DRSAVERFTKEIAPLILTGPPAVTGFAGGRPKVEEIVAYWPALIPKEVITPTVEVFEA
                     "
BASE COUNT          498 a          581 c          523 g          603 t
ORIGIN      
        1 ccctgttccg aacccaggaa gcctggggat atttaccctt cctccgcagg tatgttccag
       61 ctataccctt tcctttcttt attgcgatgt ttggcctggt gggacgcttg gttacggaaa
      121 agaagaaaag acatatcggc agcgcaacgg gtgccggttt gatcatggtc tttttgattt
      181 tctcttattt ctatttgtgg accgcggcaa tagcatggct cgcctgtttg acggttatat
      241 ggtttctggc gcgtcctgac ggatggctgc gtaccatgcg cttcctgggt ataacctggc
      301 tcattacaat ttcgggtctg attccttacc tattacttct ttcacaccgc gccacgcaca
      361 ctgatcaagt tcaggcatta gtgcatacac ggagtcccga tttgtttcgt ccctccgagt
      421 tactctcgtt tcttcttctt gccatgttgg ttcgccttgt ccttctggga ggcgtgtcat
      481 tgagggatcc caaaatacta tcgctgctct ccttgttact tctggcacca gttgttttta
      541 accaacaggt catcaccgga atttcgcttc aaccattcca ctacgaggag tttgtgacga
      601 gttactgtgt cttaattgcg gtagtcgcgg cattgcaaat tctgttaagc cactcacgag
      661 tagccaaact cgcaaagtct gaccgtggtc tcttctggat tgcaataatt tgtatcgctt
      721 atggagttaa tagtgcatcc ggtgtgagtc gtgcggctct cgagggaaac gcacaacgtg
      781 acggaacgat tcccgctgct gttagcgtga aagatttgag tcgaaacgaa cgcagtttgg
      841 tgttcctaag cgaaccccaa caagcagatg tgtttcctac tcttagctcc cagccagtct
      901 tgtgggcggt tcatatgggt gtctttccag gaagtgaacc aaaagaactc aaggagcgtt
      961 tctaccagtt cctatattat tcgggcgcct cgcagcagaa tttatacgag ttgctgaccc
     1021 agaagaacca cctctcattt gttgctttgt ttggttacga acgagagatt ccaacttttg
     1081 cagagacgtt cagacctgtt accgaggcgg aaatcaacgc tgaggcacaa ctttacggcg
     1141 actatatcaa ctcatttaat cggacaactg ccgcacgatt tgtcctggcg tacgcggtga
     1201 ttccgtctga tataccactt ggctcctcga atatcagcag atggtatgaa gtgactaaag
     1261 tagaagagcg cggatcttta acggtgtacc gacttaacct taaaccttaa agcagttcta
     1321 caaggagtcg agaaggaggc ctctagaatt ccactaactg gcgaactccg ttaacacttc
     1381 tctaaccaag tcctaactct ttcgcttcgt cgtcggatat ttcaaccatc attcttaaga
     1441 gtgccgtgga aaacgttttg ccctgtgcgt cggtcatcaa cgatagtgtg ccgcctcccc
     1501 cgaggctttc gtgcaacaaa aagttgaggg cctggagatt tggcaatttg aatctttcaa
     1561 cctttccctt acagattccc ttgaagtgat ccttcacgcg ctctgaagtc acctcgcgaa
     1621 ccaggattgg atagaactca tcacgaagcg caatcagtcc gacgttagcg gtgtcgccct
     1681 tgtcacccga gcgtgcgtgc gcaagtctta ccagttgaat cttcacgctt cgaacacctc
     1741 gacagttgga gttatcactt ctttcgggat tagtgccggc cagtaagcaa caatctcctc
     1801 aaccttcgga cggccaccgg caaagcctgt cacagcggga ggccccgtca gaatcagagg
     1861 tgcgatctct ttggtgaatc tttcaacggc cgaacggtcc gaactgcgaa cgcccactcg
     1921 cagctgaact tccggcgcgt cagatggcgg attacctgca agcggcccat gcgtcgcatt
     1981 cgcaccaaca aactcggtaa gtatttggtc gaacatcagc cccagtttgt ctaaccttgc
     2041 gcgaagaatc ttgtctgcag cttgagcttt gtcgtaggca tcgggccatg aataaaccag
     2101 cgtgccgact gccttgtagc cagctgtgta actaatggaa acctttagag agtcggttgc
     2161 ctgtcgacct ttgatcccat aaacacgaac ccgatccttg cccgc
//
LOCUS       DATCGC010001719         1937 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_422494, whole genome shotgun sequence.
ACCESSION   DATCGC010001719 DATCGC010000000
VERSION     DATCGC010001719.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1937)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1937)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1937
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_422494"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..806)
                     /locus_tag="VIJ87_16425"
     CDS             complement(<1..806)
                     /locus_tag="VIJ87_16425"
                     /inference="COORDINATES: protein motif:HMM:NF013961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HEY5446019.1"
                     /translation="MKLRIEHTTSFSYDEPISEAYTEMRLHPLDTITQRCLSFKLSTE
                     PRGEVMKYSDRFGNLVHHFDALESHQQVLVRVKSDVVTEEKFIDDQRELSPLDEFDYL
                     APTIYAPHDDALQDLVSPHVVEGNETATALSLMNALYTTMKYERGATDVRTTATEALA
                     LGRGVCQDFAHVMLSACRMAKIPARYVSGYLYNSTASEPNEAANAASHAWVDVFTSNG
                     GWISLDPTHGYEQTGDYVRVAVGRDYADVPPTRGVFKGKSKENLSVSVKVT"
     gene            complement(815..1786)
                     /locus_tag="VIJ87_16430"
     CDS             complement(815..1786)
                     /locus_tag="VIJ87_16430"
                     /inference="COORDINATES: protein motif:HMM:NF016086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-E domain-containing protein"
                     /protein_id="HEY5446020.1"
                     /translation="MADALYWMSRYVERAEDITRILTVNFHTLLDAKTEEAQAWEPII
                     NITGDEDLFRRHFDDFNARNVSEFLLWHPANPNAVTTCITHARENGRGVREQISSEMW
                     EHLNRLYFLVKDIKREISARGPYEFFDKIRHGSQAFQGITNETMTHGEAYEFIQIGKH
                     LERADKTVRIIDVKYASVNQLREGPESSLQLIAMLRSCSAFEAFRKAHLSQLQPARVA
                     EFLLFNQQFPRAVAYCLQRALRSVALMSEDAKHPTGPHRSLGRICSELDYVDINEVLG
                     VNMRPYLNRLLNIMNQAGDEITRTYFHTQVILPAEYPPRQQQTQQQQ"
BASE COUNT          442 a          493 c          506 g          496 t
ORIGIN      
        1 gtcactttca cacttacgct gaggttttct ttcgatttac ctttgaacac gcctcgcgtt
       61 ggcggcacat ctgcatagtc tcgacccacc gctacacgga catagtcacc cgtttgttca
      121 tagccatgtg tgggatcgag ggaaatccaa ccaccattac tagtgaacac atcaacccaa
      181 gcatgagagg cggcatttgc agcttcgttc ggttccgaag ctgttgagtt atagagatac
      241 ccactcacgt aacgggcagg aatcttcgcc attcgacacg ccgacaacat cacatgtgca
      301 aagtcctggc aaaccccacg tcctaacgcg agtgcctcag ttgcggtggt cctaacatca
      361 gtcgcacccc gctcatactt catcgttgta tagagagcgt tcatcaatga gagcgccgtt
      421 gccgtttcat ttccctcgac gacatgtggt gagacaagat cctgcaaagc gtcatcgtgc
      481 ggtgcatata tcgttggcgc aagataatca aactcatcga gtggcgacag ctcccgctga
      541 tcatcgatga atttttcctc tgtaacaaca tcgctcttta cgcgaaccaa cacctgttga
      601 tgtgactcga gggcgtcaaa gtgatgcacg agatttccaa agcgatcact gtatttcatg
      661 acttcacccc gaggctcggt tgataacttg aaggagagac atcgctgagt gattgtgtcc
      721 agcgggtgca gacgcatctc ggtgtaagct tcgctgattg gttcgtcgta tgagaacgac
      781 gtcgtatgtt cgatacgtag tttcatcgga agctctattg ttgctgttgg gtttgttgct
      841 gccggggcgg atattccgcc ggcaggatca cctgcgtgtg gaaataggtc ctggtgattt
      901 catcgcccgc ctggttcatt atgtttagca ggcgattgag gtacggacgc atatttactc
      961 caagcacttc attgatgtct acgtagtcaa gttctgagca gatgcgtcca agtgaacgat
     1021 gcggtcctgt tggatgcttt gcgtcttcag acatcagagc aacggatctc agcgcacgtt
     1081 gcaagcaata cgctacggcg cgtggaaatt gctggttgaa gagaagaaac tccgctacgc
     1141 gcgcgggttg aagctgagac aagtgcgctt ttcgaaaggc ttcaaacgcg ctacacgagc
     1201 gaagcattgc gatcaactgc aaagatgatt cgggaccttc gcgcagttgg ttaaccgaag
     1261 catatttcac gtcgataatt cgaacggttt tatcagcacg ttcaagatgt ttgccgattt
     1321 ggatgaactc gtacgcttca ccgtgagtca tcgtttcgtt tgtaattcct tgaaacgcct
     1381 gcgagccatg ccggatcttg tcgaagaatt cgtaggggcc gcgcgctgaa atctcgcgct
     1441 tgatgtcttt cacaagaaag taaagccgat tgagatgttc ccacatctcg ctgctgattt
     1501 gttcgcggac gccgcgaccg ttttcgcgcg catgtgtgat gcacgtcgtg actgcatttg
     1561 ggttcgccgg gtgccagaga aggaactcgc ttacattccg cgcgttgaag tcgtcgaagt
     1621 gtcgccggaa taagtcttca tctccggtga tattgatgat gggttcccag gcttgagctt
     1681 cttcggtctt tgcgtcgagg agagtgtgaa agttgacagt gagaatgcgt gtaatgtcct
     1741 cggcacgttc aacgtaccgc gacatccaat aaagggcatc tgccactcgg gaaagcatca
     1801 gtgtctaatc gctcaatacc caggtgtctt tactaccacc gccctgggaa gagttaacga
     1861 cgagcgaacc gcttctcagg gcgacgcgtg ttaggccacc cggcacaatt cgcacgttct
     1921 cgccgcacaa tatgtag
//
LOCUS       DATCGC010001720         1188 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_422504, whole genome shotgun sequence.
ACCESSION   DATCGC010001720 DATCGC010000000
VERSION     DATCGC010001720.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1188)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1188)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1188
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_422504"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            157..564
                     /locus_tag="VIJ87_16435"
     CDS             157..564
                     /locus_tag="VIJ87_16435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446021.1"
                     /translation="MDNTLFRVVHDLFARLDGPLHFRFFLQPGMAIFLAIRDGLKHSR
                     EGAPPFFWSLFNDPGHRRELLLDAWKSISKVFIIAVLLDVVYQIIVVRWFYPFETVLV
                     AILLALVPYILVRGPVNRIRRDSQNPASPHARN"
     gene            586..1035
                     /locus_tag="VIJ87_16440"
     CDS             586..1035
                     /locus_tag="VIJ87_16440"
                     /inference="COORDINATES: protein motif:HMM:NF019401.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1622 domain-containing protein"
                     /protein_id="HEY5446022.1"
                     /translation="MLLLHIFGDGLVPTPTSSGTEEFVQTLVLWLILVTEVLAAITIG
                     AGILLTITKAAGALLKKEPNGYERARLTLARFLALALEFQLAADVLGTAVSPSWTGIG
                     KLAAIAVIRTALNYFLSREIKEEVRSTGGRGLLNLERTQRQPESESS"
BASE COUNT          277 a          286 c          296 g          329 t
ORIGIN      
        1 tgagtcatat cggatttcga tgtatcaatc gctctgttta gtgggtcctc tactcgaagc
       61 tgtcagtatt gacagtccgc actgactctt cgtcgttata aaattccaat cctcaatcaa
      121 cgttctttcc tgatttacag cagagattga aaacctatgg acaacacgtt gttccgagtg
      181 gtgcatgact tatttgcgcg gctcgatggg ccactccatt ttcggttttt tcttcagcct
      241 gggatggcca tctttctggc catacgtgac gggcttaaac atagccgcga aggcgcgcct
      301 cctttcttct ggtcgttgtt taatgatccc ggacacagac gcgagctact gctcgatgct
      361 tggaaatcaa tctcaaaggt tttcatcatt gccgtgctgc tcgatgtggt ctaccaaatc
      421 attgtagtcc gctggttcta tccatttgaa acagtgctgg tagcgatcct actggccctc
      481 gttccataca tactagtgcg tggtccagtt aaccggatta ggagagactc acaaaaccct
      541 gcgagcccac acgcgcgtaa ctgacgctca agttaggaaa ctggaatgtt actccttcat
      601 atcttcggtg acggcttggt tccaactcca accagcagcg gaaccgagga attcgtgcaa
      661 actcttgtac tttggctgat cctcgtaact gaagtcttgg cagcaatcac gatcggtgct
      721 gggattttgt tgaccataac aaaggcagcg ggagctttgt taaagaagga gcccaacgga
      781 tacgaaagag cccgcttaac actggcccgt tttctcgcac tcgcacttga atttcaatta
      841 gcagccgatg tcctgggcac tgccgtttcg ccgagttgga ccgggattgg gaaattggca
      901 gcaatagcgg tgattcgtac tgccctcaac tatttcttgt cacgtgaaat aaaagaggaa
      961 gtgcgatcaa cgggcggaag aggtctctta aatttagaac gcactcagcg tcagccagag
     1021 tcagaatcgt catgagtatt aacgctaatt gatgagaggt cgtcggggct cgggttgggc
     1081 gccttaagaa gcgacggctg atggattcgt aatctgtcga tggggatagc ttgtgtttcg
     1141 taaaagtatt tttatcacct cggctgcagt tctacttctt ctcggaag
//
LOCUS       DATCGC010001721         2349 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_58462, whole genome shotgun sequence.
ACCESSION   DATCGC010001721 DATCGC010000000
VERSION     DATCGC010001721.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2349)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2349)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2349
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58462"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..537
                     /locus_tag="VIJ87_16445"
     CDS             <1..537
                     /locus_tag="VIJ87_16445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446023.1"
                     /translation="LEVNNGMFVTNQTPSRFGLSYRTKVGNDETGDAGYKIHVLYNLL
                     AFPSAKSHETISDSESPIEFEWNITAIPSDAPGYKPTAHLIFDTRKMSPLLLADIEQT
                     LYGDDITAPSLPPINIFVTFISEWVLIRITDNLDGTWTAEGPDNLIQMIGPETFQILQ
                     ANAVFTDPDNYTISDLSR"
     gene            547..1359
                     /locus_tag="VIJ87_16450"
     CDS             547..1359
                     /locus_tag="VIJ87_16450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446024.1"
                     /translation="MTTVNGMTAEAMIAIRDNVVVGGVVNGSGHLILTKYDASTIDAG
                     PVIGPTGSPGATAAQLNDLLPVNSIIEYNGTTPPNAKWLAMTGQTVTNAQTTYPDWWA
                     VLPAAQKSGSNALMPDTRGKVSIGYNSGDTDFDTIAETGGAKTHVLTQAELPAVGVTV
                     NPPATAVTGSTGTESVQHTHGLTVPGGDGLLYGDGTHLGFQAGSSYNLLFPEGSPLTN
                     PTTGVESVPHTHPAGTLSVDIAQFSSGNMGSGVAMSLVQPYIVFCKMIKVAI"
     gene            1390..1767
                     /locus_tag="VIJ87_16455"
     CDS             1390..1767
                     /locus_tag="VIJ87_16455"
                     /inference="COORDINATES: protein motif:HMM:NF016754.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 gp10 family phage protein"
                     /protein_id="HEY5446025.1"
                     /translation="MITVDTTGSFDKMEKFLHNMSQIRFREILDHYGQVGVDALASAT
                     PVRSGLTAASWTYKISQERGSTILTWLNSNVHNGVPIAIILQYGHGTGTGGYVRGYDY
                     INPAIRPVFDMIADAVWNEVKNG"
     gene            1760..>2349
                     /locus_tag="VIJ87_16460"
     CDS             1760..>2349
                     /locus_tag="VIJ87_16460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446026.1"
                     /translation="MASVDDRIVAMKFDNASFQEKVASTIASLDKLKGSLDFANANKG
                     MNDLTLASRNFSLEGIASAVEGISGKFTAMGAIAFSVINSVVNRAVTAGIQLGKSLSL
                     DQVISGFQEYETNMNSIQTVLANTKRDGTTLDDVNKALDTLNEYSDKTIYNFSQMARN
                     IGTFTAAGVSLDTSTQAIKGIANLAAVSGSSADQAST"
BASE COUNT          669 a          505 c          537 g          638 t
ORIGIN      
        1 ttggaagtaa acaacggcat gtttgttaca aatcaaactc ctagcagatt tggtttgtca
       61 taccgtacaa aagttggaaa cgatgaaact ggagatgcag gatacaaaat tcatgttttg
      121 tacaatcttc ttgcttttcc gtcagcgaaa tcacacgaaa cgatttctga ttcagaatca
      181 ccaatagaat ttgaatggaa tatcacagca ataccaagtg atgctccagg atacaagcca
      241 acagctcatc ttatatttga cacaagaaag atgagtcctt tgctgttagc ggatattgaa
      301 cagactcttt atggcgacga cattacggcg cctagtcttc ctccgattaa catctttgtt
      361 acatttatca gtgaatgggt gcttattcgt atcacagata atcttgatgg tacttggact
      421 gccgaagggc cagacaatct tattcagatg atcggaccag agacgtttca aattcttcaa
      481 gcgaatgctg tgtttacgga tccggataat tacacgatca gcgatctttc tcgttaagga
      541 gaagttatga ctacagtaaa cggcatgact gccgaagcga tgattgcgat tcgtgacaac
      601 gtcgtagttg gtggtgttgt taatggtagt ggtcatctaa ttcttacaaa gtacgatgcc
      661 agtactattg atgcaggacc tgttattgga cctaccgggt caccaggtgc aactgcagca
      721 caattgaatg atcttcttcc ggtgaactct attattgagt ataacggaac cactccaccg
      781 aatgctaaat ggttagcaat gacggggcaa acagtaacca atgcacaaac aacttatcca
      841 gattggtggg ctgttctccc agcagcgcaa aagtctggat ccaacgcact tatgcccgac
      901 acaaggggta aggtttccat cggttacaac tccggcgata ccgatttcga cacgattgct
      961 gaaacgggtg gcgctaaaac acacgttctt acacaggcag aacttcctgc tgttggcgtt
     1021 acagtaaacc ctccagctac tgctgtgact ggtagtactg gtactgaaag cgttcaacac
     1081 actcatggtt tgaccgttcc tggcggagat ggtttgctat atggtgatgg tactcacctc
     1141 ggattccagg caggtagcag ctataacttg ttgttcccag aaggatctcc acttactaac
     1201 ccaaccactg gtgttgaatc agtaccacac actcatccgg cgggcacttt gtctgttgac
     1261 attgctcagt tcagctcggg caacatgggt tctggagtag caatgagttt ggttcaacct
     1321 tacattgtgt tctgcaagat gatcaaggtt gctatctaat tgtcaaaatg ggagtgaaaa
     1381 ggaggaatcg tgatcactgt agacacaacc ggttccttcg acaagatgga aaagttctta
     1441 cacaacatgt cccaaattcg atttcgagaa attcttgatc attatgggca agttggagtt
     1501 gatgctttag caagcgcaac accagttaga agtggattga ctgctgcatc ttggacttac
     1561 aagatttcac aagaacgagg atctacaatt ctcacgtggt tgaacagtaa tgtacacaac
     1621 ggcgtaccta ttgccatcat tcttcagtat ggacacggaa cgggtaccgg tggatacgtt
     1681 cgaggttacg actacatcaa cccagcaatt cgacctgtct ttgacatgat cgccgatgca
     1741 gtatggaacg aggtgaagaa tggctagcgt agatgatcgc attgtagcga tgaaattcga
     1801 caatgcttcg tttcaggaaa aagtagcctc tacgattgca agtttggata agctgaaagg
     1861 cagtcttgac tttgcaaatg cgaacaaagg catgaacgat ctaaccctag ctagccgtaa
     1921 tttcagcctt gaaggtattg ccagcgctgt cgaaggcatt tcaggtaagt tcactgcaat
     1981 gggtgcaatt gctttcagcg ttatcaatag cgttgtcaat cgtgcagtta ctgcaggtat
     2041 tcaacttggt aagtctttgt cattggatca agttattagc ggtttccagg aatacgaaac
     2101 caacatgaac tcgattcaaa cagttcttgc taacacaaag cgagatggca ctacgttgga
     2161 tgatgtcaac aaagcgcttg acacattgaa cgaatattcg gacaaaacca tttacaactt
     2221 ctcgcaaatg gctagaaaca ttggtacctt tactgcggca ggtgtcagtc ttgatacttc
     2281 aacgcaggct attaaaggta ttgcaaacct tgctgctgtc tctggttcaa gtgcagacca
     2341 agcttcgac
//
LOCUS       DATCGC010001722         1461 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_192443, whole genome shotgun sequence.
ACCESSION   DATCGC010001722 DATCGC010000000
VERSION     DATCGC010001722.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1461)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1461)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1461
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192443"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            198..>1461
                     /locus_tag="VIJ87_16465"
     CDS             198..>1461
                     /locus_tag="VIJ87_16465"
                     /inference="COORDINATES: protein motif:HMM:NF014850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 2 TIM barrel-domain
                     containing protein"
                     /protein_id="HEY5446027.1"
                     /translation="MKKRLNRRSFIKTSGAGLAGLALLPNITDIAFAQSGSTSQRRIL
                     PLNHNWLFSDKVLPNGSSPTFNDRSFTRVTIPHTNTLLPWHGFDDKEYEFVSLYRRHF
                     TMPPGLSGRRVFIDFGGVMTAAKVTINGHSLGEYRGGYTPFSFELTPHLNLRGDNVLA
                     IEVDSTERKDIPPFGGDIDYLTFGGIYRDVSLRVVPQTFIENVFAKAAGVMTGDRHVA
                     VQCFLDRVDSGNPLELVAELRDGNKVVASQSTDIGPNDKTINLSLRNLASVELWDSDH
                     PKLYDVTVRLLESNHVIDEYSTRIGFREAKFTPDGFFLNGKHLKLRGLNRHQTFPFVG
                     QAMPARVQRRDAWILRKELKCNIVRTSHYPQSPHFLDACDEYGLMVLEEIPGWQHVGD
                     DQWKDLSVSYVEKMIRRDWNHPSIIIWGV"
BASE COUNT          352 a          380 c          369 g          360 t
ORIGIN      
        1 tgacccgacg ctaccgcgtt acggtactga cttcatcgcc acttagatcg ttcttgacca
       61 ggagacatta aatgaaaaaa cgacttaatc gacgtggcgt ccggtcgcag cgttaatcga
      121 cattagtgag ccatacgcta ccgcgttacg gtactgacct atcgccactt agatcattct
      181 tgaccaggag acattgaatg aaaaagcgac tcaatcgacg cagctttatc aaaaccagcg
      241 gagcgggact ggcaggacta gcattgctcc cgaacattac tgatattgct tttgcgcaaa
      301 gtggatcgac ttctcagcgt cggattctgc cactcaatca caactggctc tttagtgaca
      361 aagttcttcc aaacggatcc agcccgacct ttaatgatcg ctcatttact cgagtcacaa
      421 ttccccatac aaatacgctg ctgccgtggc acggtttcga cgataaagag tatgagtttg
      481 tttcgctcta tcgtcggcac ttcacgatgc ctcccggact gagcggccgt cgtgtgttca
      541 tcgactttgg tggggtgatg accgcggcca aagtcacaat taacggtcac agtcttggtg
      601 aatatcgtgg cgggtacacc cctttctcgt ttgagttgac accgcatctg aatttgcgcg
      661 gcgacaacgt gcttgcaatc gaagtcgact caaccgaacg gaaagacatt ccaccgttcg
      721 gtggcgacat tgactacctg acattcgggg gaatctaccg tgacgtctca ctgcgcgttg
      781 ttccgcaaac tttcattgag aatgtttttg cgaaagctgc tggcgtgatg accggtgacc
      841 gccacgttgc ggtccagtgc tttctcgacc gagttgattc cggaaatccc ctggagctcg
      901 ttgctgaatt gcgcgatggc aacaaggttg tggcttccca aagtactgat atcggtccga
      961 acgataaaac catcaaccta tcgctgcgaa atcttgcctc ggttgagttg tgggatagcg
     1021 atcacccaaa gctctacgat gtaaccgtga ggttgctcga gagtaatcac gtaattgatg
     1081 agtactcaac tcgaatcggg ttccgcgaag cgaagttcac gcccgacgga tttttcctca
     1141 atggaaagca tctcaagttg cgtggactaa atcgtcacca gacattcccc tttgtcggtc
     1201 aggcgatgcc tgctcgtgta caacgacgcg acgcctggat tctgcgaaag gagttgaagt
     1261 gcaacatcgt tcgcacgtca cactacccgc agtcaccaca cttcctcgat gcctgcgacg
     1321 aatacgggct gatggtgttg gaagagatac cgggttggca acacgttggc gatgaccaat
     1381 ggaaagactt gtcggttagc tacgtcgaaa agatgattcg gcgcgattgg aatcatccat
     1441 cgatcattat ctggggagtg c
//
LOCUS       DATCGC010001723         1121 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_290703, whole genome shotgun sequence.
ACCESSION   DATCGC010001723 DATCGC010000000
VERSION     DATCGC010001723.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1121)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1121)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1121
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290703"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            413..>1121
                     /locus_tag="VIJ87_16470"
     CDS             413..>1121
                     /locus_tag="VIJ87_16470"
                     /inference="COORDINATES: protein motif:HMM:NF024845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-TFIIB domain-containing protein"
                     /protein_id="HEY5446028.1"
                     /translation="MQCLNCKIEMFNYDVTTKHAQLSYDACEQCGSLWLDAGELDKLA
                     FQVAGSIEFCSEEEDKTRPPMRRCPRCIEVDLTPVKFLGVSDINLDRCHNCGGFWLDG
                     GELNLVDRELAKIMPVSGHGFADFVNNVHVPFWFKRIRRPSSETDFEVVVTPIPGARR
                     KGTTDKRCPADGAALDLYALSRIKFEGCPTCHGMWLDKDELRKLKNKVNDGQLHWLNR
                     EVNDIEKTSMISSSRICP"
BASE COUNT          297 a          270 c          308 g          246 t
ORIGIN      
        1 ggaataacct gcgagtcctc gagcagaaag tgaacgcgag cgacaaactg agcgatgcgg
       61 acaagttcga cttgcaacaa tatatcacgc gctgttacgg atcgctcacc acgttcaaca
      121 tcctgttcaa aaacaaggac gaccagttcc gaaccagctc ctagggcagt tcatcactca
      181 cctgaaaggg tgaatgcccg gaaaattggc gaaagccttg gagcgagcgc ggcgagttct
      241 tcatcgaata catctcagcg ctctctgcga ttaaacgtca ggtgcgttca ttgcgaagaa
      301 cgcaagtcgg atgcgctgac catataaatc gctgcgagct ccagaaaagc tgacaagaca
      361 cctggaactg ttattctatg cgtgcaaacc gagaacagga gagatttcgc gcatgcagtg
      421 cctgaactgt aagattgaaa tgttcaatta cgatgtgacc acgaaacatg ctcagctgtc
      481 ctacgacgcc tgtgagcagt gcggcagtct ttggctcgac gcgggagagc tggataagct
      541 tgccttccaa gttgcaggca gcatcgaatt ttgttccgag gaggaagaca aaacgcggcc
      601 gccaatgaga agatgtcccc gctgcatcga agttgatttg acaccagtga aatttctagg
      661 tgtgagtgat atcaatctcg atcgttgtca caactgcggc ggcttttggc tcgacggtgg
      721 agaattgaat ctcgttgatc gcgagctcgc caagatcatg ccggtaagtg gtcatggttt
      781 cgctgatttc gtcaacaacg tgcacgtccc gttttggttc aaacgcatca ggcgaccgag
      841 cagtgaaact gacttcgagg tggttgtgac tcctattccg ggggccaggc gcaaagggac
      901 aacagataag agatgtccgg ccgacggtgc tgcgctcgat ctttatgcgc tttcacgaat
      961 taaatttgaa ggttgcccga catgccacgg aatgtggcta gacaaggacg aactgcggaa
     1021 gctcaagaat aaggtgaatg atggccagtt acattggctc aaccgggagg taaatgatat
     1081 cgagaagacg agcatgatct cgtcgtcccg tatctgcccg a
//
LOCUS       DATCGC010001724         1516 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_490528, whole genome shotgun sequence.
ACCESSION   DATCGC010001724 DATCGC010000000
VERSION     DATCGC010001724.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1516
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_490528"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1197)
                     /gene="mnmG"
                     /locus_tag="VIJ87_16475"
     CDS             complement(<1..1197)
                     /gene="mnmG"
                     /locus_tag="VIJ87_16475"
                     /inference="COORDINATES: protein motif:HMM:TIGR00136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HEY5446029.1"
                     /translation="MKHFDESFDVIVIGAGHAGCEAASASARLGAETAVITLNLDLVG
                     QMSCNPAIGGIAKGHLVREVDALGGIMGRVIDRTGIQFRLLNRSRGPAVQSPRAQADR
                     LLYRTEMRRVLESTSNLSLRQGKVVDLLVHNAKIVGIELEDGRTFGAKAVVVATGTFL
                     NGLIHTGRRTYPGGRTGEPAAIELSESLRRLGFSVGRLKTGTPPRLDGRTIDWSAFEP
                     QPGDKVPVPFSFATDKVEQAQINCYIGYTSDAVHDAIRKNLSESPLYSGKIKGVGPRY
                     CPSIEDKVVKFAEKSRHQLFLEPEGHDTNEVYLNGFSTSLPAELQQELVRMVTGLEEA
                     RVIRPGYAIEYDFVDPRELGPDLQTRRVSGLYHAGQINGTTGYEEAACQGLIAGINAA
                     LSTQGRA"
     gene            complement(1199..>1516)
                     /locus_tag="VIJ87_16480"
     CDS             complement(1199..>1516)
                     /locus_tag="VIJ87_16480"
                     /inference="COORDINATES: protein motif:HMM:NF024045.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446030.1"
                     /translation="RENSVRVSALTGQGLEQLRAAILSRLNGGQENREGLLITNARHH
                     DLLNAASGEIEAALGLLGDRASEELVLVPLHNALRYLGEITGETTSEDILTEIFSTFC
                     IGK"
BASE COUNT          345 a          443 c          360 g          368 t
ORIGIN      
        1 cgctctgcct tgtgtagaca aggccgcgtt gatgccggca attagcccct gacaagcggc
       61 ctcctcgtag ccggttgtgc cgttaatctg ccctgcgtgg tacaaccctg atacacgtcg
      121 tgtttgaaga tccggcccca actctctcgg gtccacaaag tcatactcga tggcgtaacc
      181 cggccgaata actctcgctt cttccagacc cgtaaccatt ctcactagct cctgctggag
      241 ctcggcgggc aatgaggtcg aaaagccatt caagtaaact tcatttgtat cgtgaccttc
      301 gggctccaaa aacaactggt gccgactctt ttctgcaaac tttacgacct tgtcttcaat
      361 cgaagggcag tatcgcgggc cgactccttt gatctttccg gagtataaag gtgattcgga
      421 gaggttcttt cgaatggcat cgtgaactgc gtcactcgta tatccgatgt agcaattgat
      481 ttgagcctgc tcgactttgt cggtggcaaa ggagaaaggc accgggacct tgtcaccagg
      541 ttgtggctca aaagcagacc agtcgatcgt tcgaccatcg aggcggggag gtgttcctgt
      601 tttcagtcgt ccgaccgaaa aacctaatcg cctgagtgac tccgacaatt caatggcggc
      661 cggctcacca gtccgtcctc ccggatatgt tcgacgaccc gtatgtatca aaccgttgag
      721 aaaagtgccg gtagcgacga cgaccgcctt tgctccaaat gttcttccat cctcgagttc
      781 aatgccaacg atcttagcgt tgtggactaa caggtctaca acctttcctt gccgcaaaga
      841 tagatttgaa gtcgactcca agacgcgccg catttcagtt ctgtagagca gtcgatcggc
      901 ttgcgcacgt ggtgactgca cggcgggtcc acgcgaccta ttcaataagc gaaactggat
      961 tccagtccgg tctattaccc gccccataat tccaccgagc gcatcaacct ctcgaactaa
     1021 atgccccttt gcaattccac ctattgccgg gttacacgac atctgtccga cgagatccaa
     1081 attcaaggtg atgacggcag tctctgcacc gagacgcgct gaagcagacg ctgcctcgca
     1141 gcccgcgtgt ccagcgccta tcacaattac gtcgaatgat tcgtcgaagt gcttcactct
     1201 atttcccaat acaaaatgta gagaagatct ccgttaggat atcctcgctc gtcgtctcgc
     1261 cggtaatttc cccaaggtat cgtaaggcat tgtgcaatgg caccaacacc aattcctcgc
     1321 tcgcacgatc tccgagaagt cccaatgctg cctcgatctc cccactggca gcattcagaa
     1381 ggtcgtgatg gcgagcattc gttatcaaca atccttcgcg attctcttgg cctccgttta
     1441 ggcggctgag tatagcagca cgtaactgct caagcccctg accagttaat gctgaaaccc
     1501 gaacggagtt ttctcg
//
LOCUS       DATCGC010001725         1157 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_490550, whole genome shotgun sequence.
ACCESSION   DATCGC010001725 DATCGC010000000
VERSION     DATCGC010001725.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1157)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1157)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1157
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_490550"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..202
                     /locus_tag="VIJ87_16485"
     CDS             <1..202
                     /locus_tag="VIJ87_16485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446031.1"
                     /translation="TPPVPTTTNPPTATTNTVQPPTPPNGPGLPDTGIEISTFGWGLI
                     LITAGILILVWNRRSLKNRDQR"
     gene            220..447
                     /locus_tag="VIJ87_16490"
     CDS             220..447
                     /locus_tag="VIJ87_16490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446032.1"
                     /translation="MIITKQFDFNKQDQRWHELHNLLDLMDVPTFRYDDVNWLLRNLP
                     INNGNHPQYARAYELCKEIKKEISKAIAAML"
     gene            469..642
                     /locus_tag="VIJ87_16495"
     CDS             469..642
                     /locus_tag="VIJ87_16495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446033.1"
                     /translation="MSDQPNPGFVEDPHSEPRPAEQPEQPVPQPQPEPNQDPQPAPAP
                     EPDLPPSDAESEE"
BASE COUNT          342 a          274 c          256 g          285 t
ORIGIN      
        1 cacgcctcct gtcccaacaa ccacaaaccc cccaacagca actacaaata ctgtccaacc
       61 gccgactcct cctaatggac ctggtttgcc agatacagga atcgaaatct ccaccttcgg
      121 atggggattg attcttatta cggctggtat tctgattctt gtttggaata ggcgttcact
      181 gaaaaaccga gatcaacgtt aactgaaggg ataattgtaa tgataatcac caaacaattc
      241 gatttcaaca aacaagatca gcgatggcac gaacttcaca atcttctcga tttgatggac
      301 gtaccaacgt ttcgttacga cgatgtcaat tggctgctac gcaatctgcc gattaacaat
      361 ggtaatcacc ctcagtacgc tcgtgcatac gagttgtgca aagagatcaa gaaggaaatc
      421 agtaaggcaa tcgccgcaat gctttaacaa tggagagggg gtgacaatat gtcagatcaa
      481 ccgaatccag ggttcgttga agatccacac tcagagccta ggccggcgga acaaccggaa
      541 cagccggtgc cgcagccaca acctgagccc aatcaggatc ctcaaccagc tcctgcgcca
      601 gaaccggatc ttcctccgag tgacgcagaa agcgaagagt gaaagatgta atgaatagaa
      661 atacctacca aagagtttcg gtcaccgttt gctcttggtt tgactattaa cgggacaaag
      721 ttgggatagg ggatatcctc tcgaacatgc ccaacatgga tatctacacg tgcgatatcc
      781 ctcacatccg gctggtgagt aaatacagcg aggacgtacc ctgctaccac tccagggaga
      841 aatacgtaaa ggaagtggtt ttaaaggttg gttgtgagct cttgccttaa aaacgtagaa
      901 ctctcattat cagcgtatgt tgaggagttg attgagaagt ctgcagcaag gaaacgactt
      961 cgaagcgttt ctggagtata caatgccctt tgcaaagtta ctcactcaat caactcctga
     1021 gcatatgctg ggctatttct caaaggagga tgaaatgaaa aagacattga ttagcttaat
     1081 tttgcttttc aaccttatat ttttccccgg taaggttttt gctgtaccca attctactac
     1141 accttgtgga gtcgtat
//
LOCUS       DATCGC010001726         1014 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_224265, whole genome shotgun sequence.
ACCESSION   DATCGC010001726 DATCGC010000000
VERSION     DATCGC010001726.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1014)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1014)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1014
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224265"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..431)
                     /locus_tag="VIJ87_16500"
     CDS             complement(<1..431)
                     /locus_tag="VIJ87_16500"
                     /inference="COORDINATES: protein motif:HMM:NF013486.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family N-terminal
                     domain-containing protein"
                     /protein_id="HEY5446034.1"
                     /translation="MCTDRRDFLRASAGIAGAMLLGGYTTSLHADEPEREQQGSVPEP
                     ISKLRRMTDGIVPITLDERRQRIEKARRLMKEHRIDAMYVEPGSSMFYYTGMRWGTSE
                     RMFALVIPERGDIAWVCPKFEEERARELITIGEDIRTWEED"
     gene            555..>1014
                     /locus_tag="VIJ87_16505"
     CDS             555..>1014
                     /locus_tag="VIJ87_16505"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family cysteine hydrolase"
                     /protein_id="HEY5446035.1"
                     /translation="MPIRSENLHGNVPDSSGAALLLIDVINDFEFEGGEKLLPQALLV
                     GRNIAWLKQEAKKHKIPAIYVNDNFGRWQSDFRKIVSHCRRDDIRGKPFVELILPDEE
                     DYFVLKPKHSGFYSTTLDLLLSHLQARNLILSGIAGNNCVLFTANDAYMRD"
BASE COUNT          233 a          276 c          241 g          264 t
ORIGIN      
        1 tcatcttctt cccacgtgcg aatgtcttcg ccgattgtga tcaactcgcg tgcccgctct
       61 tcttcaaact ttggacatac ccacgcgata tcgccgcgct ccgggatgac gagagcaaac
      121 attcgctcgc tcgtgcccca acgcatcccc gtgtaataga acatactgga ccccggttcg
      181 acgtacatcg cgtcaatgcg gtgctctttc atgaggcgtc gtgctttctc aatccgctgg
      241 cgcctttcat caagtgtgat tggtacgatt ccatcagtca tgcgcctaag tttgctaatc
      301 ggttcgggaa cgcttccctg ttgttcacgt tcaggttcat cagcgtgtag tgaagtcgta
      361 taaccgccaa gcaacatcgc tccggcgatt ccggccgacg cgcgcaggaa atctcgtcta
      421 tctgtgcaca taaggggctc tctgtctttt agaatttagg aagcctttga agcagagcca
      481 cagattacac agattacgca gaatttggaa agaaattgtt gttgtatagg acttataagt
      541 cttgtaggtc ctatatgccc attcgaagcg aaaatctcca tggcaacgtg cctgatagtt
      601 ctggcgcggc cctcctatta attgatgtga ttaatgactt cgagtttgag ggaggcgaga
      661 aactattgcc tcaggcgctg ctggtgggtc gcaatatcgc ctggcttaaa caggaagcca
      721 agaagcataa gatccctgcc atctacgtca acgataattt tggacgctgg caatctgact
      781 ttcgcaaaat cgtttctcac tgtcgtcgcg acgacattcg cgggaaacca ttcgttgaac
      841 tcatactgcc cgacgaggag gactacttcg ttctaaaacc caaacactcc ggcttctatt
      901 caactacact cgatctgttg ttgagtcacc tccaggcgcg caatctcatt ctgagtggca
      961 tcgcgggcaa caactgcgtg ctgttcaccg cgaacgacgc gtacatgcgc gact
//
LOCUS       DATCGC010001727         1327 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_257004, whole genome shotgun sequence.
ACCESSION   DATCGC010001727 DATCGC010000000
VERSION     DATCGC010001727.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1327)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1327)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1327
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257004"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..547
                     /locus_tag="VIJ87_16510"
     CDS             <1..547
                     /locus_tag="VIJ87_16510"
                     /inference="COORDINATES: protein motif:HMM:NF014731.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015079 - potassium ion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="KUP/HAK/KT family potassium transporter"
                     /protein_id="HEY5446036.1"
                     /translation="GGRRLVRQYLSTTMPPLADFLKDVLARHPIRVRGQAIFLTTSHE
                     STPPAFLQNVRHNTVVHELVMFLKIVTARVPIIPRAEQLNIGQFAPGIYRVTVRHGFM
                     ETPEITTLLGLCQEQGVPVHLPGTTFFVSRINSLATPKPGMALWREHLFVFLSRNSRR
                     TSAFLGIPSEQVVEIGVVVDI"
     gene            complement(645..1166)
                     /locus_tag="VIJ87_16515"
     CDS             complement(645..1166)
                     /locus_tag="VIJ87_16515"
                     /inference="COORDINATES: protein motif:HMM:NF022666.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3015 family protein"
                     /protein_id="HEY5446037.1"
                     /translation="MMMNLHHMVRSMGLIPPVLLLSSCMTLPPLVTQPTLDVTKAPFR
                     ASTDLSNAPLKASSELSNGTSQATTDLTEPTKNFTSSTSPKSWFHGDGTLKAEHKVMA
                     FTVLNYDNLKENIARGQGEYLGSLASLIDVRPEHQDAFFSSIQRLYPLIYADDLPPVE
                     SVNRLISELTNTL"
BASE COUNT          307 a          340 c          368 g          312 t
ORIGIN      
        1 cggtgggagg cgtctggtca gacagtattt atcaacgact atgccgcctc tcgccgactt
       61 cctgaaggat gtcctggctc gccaccccat tcgcgtccgc ggtcaggcca tctttctcac
      121 cacctcccat gagagcaccc cacccgcgtt tctccaaaat gttcggcaca atacggtggt
      181 ccatgagctg gtgatgtttc tgaagatcgt gacggcacgc gtcccgatca tccctcgcgc
      241 cgagcaactc aacattgggc aatttgcacc tggaatctat cgtgtgactg ttcggcatgg
      301 atttatggaa acgcccgaga tcacaaccct cttgggtctg tgccaagaac aaggagtgcc
      361 tgtccatctg ccggggacca cctttttcgt gagtcgcatt aactcgcttg cgacccccaa
      421 gcccgggatg gcgctctgga gggagcatct gttcgtcttc ttgtccagaa actcacgtcg
      481 gacaagcgcc tttctaggga ttccctcaga gcaagtcgtc gaaattggcg tcgtggtgga
      541 tatctaggag cccggatagc gcatatgaga tggagagttg aagtagaacc tggctacctt
      601 ggtcgcctca atggcacgcc atgccggtat tcctttgtgc gcactcagag cgtgtttgtt
      661 agctcgctga tcaaccgatt cacggattcc acgggcggaa gatcatccgc atagataagg
      721 ggatataagc gttggataga agaaaagaat gcgtcttgat gttccggcct tacatcgatg
      781 agagaggcga gtgaccccag atattcaccc tggcctcgcg cgatattctc cttaaggtta
      841 tcgtaattca ggactgtaaa tgccatgact ttatgttcgg cttttaatgt accgtcgcca
      901 tgaaaccaag atttcgggga cgtgctggag gtgaagtttt ttgtgggctc agtgagatct
      961 gtcgtggcct gagaggtccc attggataat tcgcttgacg ccttcaaagg ggcgttactc
     1021 agatccgtgc tggcccgaaa gggcgctttg gtgacatcca aggtcggttg cgtgaccaac
     1081 ggagggagtg tcatgcacga ggacaacaga agaactggtg gaatcaaacc cattgagcga
     1141 accatatggt gcaggttcat catcatcctc ctcgttaaat agcactccgt aaccaactgc
     1201 aaggaccatg gagtaatgga gcaaggataa tgccgtcgag tcgcgaggaa agtgcttgag
     1261 cccaatagca gatacgaaga aggagacctc aggagtctcg tgcgaagggg acaggatgtc
     1321 tcagatc
//
LOCUS       DATCGC010001728         1016 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_326787, whole genome shotgun sequence.
ACCESSION   DATCGC010001728 DATCGC010000000
VERSION     DATCGC010001728.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1016)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1016)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1016
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_326787"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1016)
                     /gene="purL"
                     /locus_tag="VIJ87_16520"
     CDS             complement(<1..>1016)
                     /gene="purL"
                     /locus_tag="VIJ87_16520"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR01736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HEY5446038.1"
                     /translation="INELLGREPTLDELGIFSVMWSEHCSYKSSRIHLKRLPTTGERV
                     IVPPGENAGVIDLGDGWCAAFKIESHNHPSFIEPFQGAATGVGGILRDIFTMGARPVA
                     AMNSLRFGSLDHPVHGRRNRSLLAGVVDGIAHYGNAFGVPTVGGEVAFDDAYALNPLV
                     NAFALGLVRHDQIFFGKATGIGNPVLYVGAKTGRDGIHGATMASAEFDEEALEKRPTV
                     QVGDPFLEKLLLEACLEAMRSGAVAGIQDMGAAGLTSSSCEMAARAGTGIELDLSLVP
                     QREVGMTAYEMLLSESQERMLIVAHAGREREVMDIFRKWDLDAVVIGRVRDTKRMQVI
                     HNGV"
BASE COUNT          253 a          307 c          248 g          208 t
ORIGIN      
        1 cactccgttg tgaatcacct gcatgcgctt cgtatctctg acccgaccga taacaaccgc
       61 gtcaagatcc cacttgcgaa agatatccat cacctctcgc tcgcgacctg catgcgccac
      121 gatcagcatg cgctcctgcg actctgaaag gagcatttcg tatgcagtca tgccgacttc
      181 acgctgggga acaagtgaga gatccaactc gattccagtt cccgcacgcg ccgccatttc
      241 acacgatgac gaagtcagtc cagccgcccc catatcctga atacctgcaa cggcgccgct
      301 gcgcatcgct tcaagacaag cttccaacaa aagtttttcg aggaatggat caccaacttg
      361 cacagtcggt cgtttctcca atgcttcttc gtcaaactca gccgaagcca ttgtggcacc
      421 gtgaattccg tcgcgacctg tcttggcacc aacatagaga acagggttgc caattcccgt
      481 cgccttacca aaaaagatct gatcgtgacg aaccaggccg agcgcaaagg cgttgacgag
      541 tggattcagg gcatacgcat catcgaaagc tacttcacca ccgactgtcg ggacaccaaa
      601 cgcattgccg taatgagcga ttccatcgac aactcccgcc aggagagatc tattacgacg
      661 accatgaaca ggatggtcca gcgaaccaaa gcgcaggctg ttcatcgcag caactggtcg
      721 agcacccatc gtgaagatgt cgcggaggat tccgccaacg ccagtggctg ctccctgaaa
      781 cggttcgatg aacgagggat gattatgaga ttcgatcttg aacgcagcgc accaaccatc
      841 gcctagatcg ataactccgg cgttttcacc cggtggcaca atgacgcgct cgcccgtagt
      901 tgggagtcgc tttaggtgta tgcgcgaaga cttgtacgag cagtgctctg accacatgac
      961 cgaaaagatg ccgagctcgt ccagagtcgg ttcgcgacca agcagttcgt taattc
//
LOCUS       DATCGC010001729         1347 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_389699, whole genome shotgun sequence.
ACCESSION   DATCGC010001729 DATCGC010000000
VERSION     DATCGC010001729.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1347)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1347)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1347
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_389699"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(153..350)
                     /locus_tag="VIJ87_16525"
     CDS             complement(153..350)
                     /locus_tag="VIJ87_16525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446039.1"
                     /translation="MTPEELNERLLDIISENRKLQRHINVQMMTILSSIIERLDNNEL
                     DEAMDVLKTVHALYVHKVAGD"
     gene            complement(351..659)
                     /locus_tag="VIJ87_16530"
     CDS             complement(351..659)
                     /locus_tag="VIJ87_16530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446040.1"
                     /translation="MAMIWIMMHPRATHDMLGFIPGFLDENDPRSAKEQIHANYISGW
                     HTFQGFKMADNGNLLYPGDPPTRLLAMTHLRNETILFYEHDWLAIMQRDGSFEVARID
                     "
     gene            complement(894..1124)
                     /locus_tag="VIJ87_16535"
     CDS             complement(894..1124)
                     /locus_tag="VIJ87_16535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446041.1"
                     /translation="MAKSPIQQRDVHIAKLEALIRAIQDALNTCETGDNLVSVARAAH
                     QAELVMSKITNIVDGYTHVNEWEDVDNDSAPL"
     gene            complement(1117..>1347)
                     /locus_tag="VIJ87_16540"
     CDS             complement(1117..>1347)
                     /locus_tag="VIJ87_16540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446042.1"
                     /translation="QKCGSVVMQVTWTGAPPSECDVCSHKITAEFYDARTRTGQWGCL
                     CHNCFKSHGVGLGQGKGQHYEKLGSAWVKVNG"
BASE COUNT          309 a          357 c          306 g          375 t
ORIGIN      
        1 ccgattccgc ctttcatctt ccattgttcc tgtccctttc tagattgcct tggctctgta
       61 ttacttgcgg gctggccacc gccattggct acattactaa gcgatagtct agcgcgccta
      121 ggccctagcg tatagggcct aggttcacca gtttagtcac cagctacttt atgcacatat
      181 agtgcatgca cagttttcaa tacatccata gcttcatcaa gctcattgtt atcaagacgc
      241 tcgatgatac ttgaaagtat cgtcatcatt tggacattga tatgtcgttg cagtttgcga
      301 ttttcagata ttatatccaa taatcgctca ttcagttctt ctggcgtcat ttagtcaatc
      361 ctcgcaactt caaaagaacc atcacgctgc attattgcca accaatcatg ttcatagaac
      421 aagatggttt cgtttcgcaa gtgtgtcatc gcgagcagtc ttgttggcgg atcaccagga
      481 tacagaagat tgccattgtc ggccatcttg aatccctgga aagtatgcca accagagatg
      541 tagttggcat gtatttgttc cttagcagaa cgcggatcat tttcatccag aaagccagga
      601 atgaatccca gcatatcatg ggtagcacgc ggatgcatca ttatccaaat cattgccatt
      661 gttccgttcc tttctagatc attctcccct cacctttcgc actctggact tgggaccaga
      721 cgatggcggt ttagagaagc ctctaggatc gcgctagagg cgtaggctag aggatccgcg
      781 cctagggtag cggccccctc cgttctacgg ccctaggatc gtccctaggg cgtctagcgg
      841 gaggctcccg cgcctagtcc taggctacgc tcgcctaggc gcgggaggat aggctagagc
      901 ggagcggaat cgttatccac atcctcccat tcgttgacat gagtatatcc gtcaacgata
      961 ttcgtgatct tggacattac gagttcggct tgatgtgccg ctctagcgac agacactaga
     1021 ttatcgccag tttcgcaagt attcaacgca tcttggatag cgcgaatgag cgcctccaac
     1081 tttgcgatat gaacgtcgcg ttgttgtatc ggggatttag ccattgactt tcacccatgc
     1141 gctacccagc ttttcgtaat gctggccttt gccttgccca agacccacac cgtgagactt
     1201 gaaacaattg tggcaaagac aaccccactg gcccgttctt gttcgggcat catagaattc
     1261 agctgtgatc ttgtgggagc aaacatcaca ctctgatgga ggagcaccag tccatgttac
     1321 ttgcattaca acactcccgc atttctg
//
LOCUS       DATCGC010001730         1401 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_326813, whole genome shotgun sequence.
ACCESSION   DATCGC010001730 DATCGC010000000
VERSION     DATCGC010001730.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1401)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1401)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1401
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_326813"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..384)
                     /locus_tag="VIJ87_16545"
     CDS             complement(<1..384)
                     /locus_tag="VIJ87_16545"
                     /inference="COORDINATES: protein motif:HMM:TIGR04214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CSLREA domain-containing protein"
                     /protein_id="HEY5446043.1"
                     /translation="MFRRHCRIPTPFWFLIVVASVFTLWHIAPESLRNLIEPTALAAN
                     FIVNTTDDHNDGVCNAADCSLREAINAVNGGAGGDTISFNIAGAGVRTINVTATGGFS
                     ITKAVTIDGTTQPGFAGVPLIELNGA"
     gene            complement(711..1097)
                     /locus_tag="VIJ87_16550"
     CDS             complement(711..1097)
                     /locus_tag="VIJ87_16550"
                     /inference="COORDINATES: protein motif:HMM:NF020397.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1801 domain-containing protein"
                     /protein_id="HEY5446044.1"
                     /translation="MARKRPTTTAEYIQAAPSEGQPHLRRLYAILKSVAPEAEEVIKW
                     GNPFFVEPRFLFAFSAHKAHCNLMATPAALEPFRKKLAKFTITDAGLLQLPYNQPLPE
                     DLIRKIAQYRLRNMGEGDDFWAGMKQ"
     gene            complement(1118..1330)
                     /locus_tag="VIJ87_16555"
     CDS             complement(1118..1330)
                     /locus_tag="VIJ87_16555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446045.1"
                     /translation="MISNATQRVIVRWIHLVFSIPILGYIYSPFEEIPNYAPAVRFFF
                     LPVMVLSGLWMWKGHVLLRHISKRSS"
BASE COUNT          348 a          336 c          384 g          333 t
ORIGIN      
        1 cgcgccattg agttcgatca aaggcactcc agcgaaaccc ggttgcgtgg taccgtcaat
       61 cgtgactgcc tttgttatgg agaacccacc cgtcgcggtc acgtttattg tgcggactcc
      121 agcgccagcg atgttgaatg aaatagtatc gccacccgcg ccgccattta ccgcgttgat
      181 cgcctcgcgc aaactacagt cggccgcatt gcacaccccg tcgttatgat cgtccgtggt
      241 gttgacgata aagttagctg caagcgcggt tggttcaatt aagttacgta gactctcggg
      301 tgctatgtgc cacaaagtga aaacagaggc cacaacgatc aagaaccaaa acggggtagg
      361 aattcggcaa tgacgtcgga acatgtttgt ttcctttcag tcgaaacaat ttagacaggg
      421 aattcttaat tgaggatgtg ggcagccgaa ttggcgcgcg agagaattca ggttggagcg
      481 gaagtcgcga caacctgcga aactgatgag ttgatgaagg aggctcaacc gcgggtaacc
      541 cgcaacgacc tgttaagccc tgaagcagcc aagtccatcg tggaccatta tagaagagag
      601 agcagggaaa taaatagaga attctcgaaa ccaggcagct ggatcagaaa tgcctttttt
      661 cagacagttt aaattgaagg tcgggtagag aagcagggct ccccttgtcg ctattgtttc
      721 atgcctgccc agaaatcgtc gccttcaccc atattccgga gtcggtactg agcgatcttg
      781 cgaatcagat cctctggcag gggttggttg tagggaagct gaagaaggcc ggcgtcggta
      841 atcgtgaact ttgcgagttt cttgcgaaat ggctccagcg ccgccggtgt tgccatcaag
      901 ttgcagtgcg ccttgtgcgc ggagaaagcg aacaggaagc ggggttccac gaagaagggg
      961 tttccccact tgatcacctc ctcggcctca ggcgcaacgc ttttgaggat ggcatacagc
     1021 cggcgcaaat gtggttggcc ctcgcttggg gcagcttgga tatactcggc ggtcgtagtc
     1081 ggacgtttgc gtgccatctg ttttgcctcg attggtgtta gctggacctt ttcgaaatat
     1141 gtcgtagaag gacatggcct ttccacatcc acaatcccga aaggaccatc acaggaagga
     1201 agaaaaatcg aacagcggga gcgtagtttg gaatctcttc aaacggacta taaatgtaac
     1261 ctagtatcgg gatgctaaag acgaggtgaa tccagcgaac aatcacgcgt tgggttgcat
     1321 tactaatcat ctaatcctct cccattcaga atttgctgca aatatttttc gactcttgcc
     1381 tcgcgagttt tagattgttt c
//
LOCUS       DATCGC010001731         1361 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_92467, whole genome shotgun sequence.
ACCESSION   DATCGC010001731 DATCGC010000000
VERSION     DATCGC010001731.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1361)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1361)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1361
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92467"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1072
                     /locus_tag="VIJ87_16560"
     CDS             <1..1072
                     /locus_tag="VIJ87_16560"
                     /inference="COORDINATES: protein motif:HMM:NF036826.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="family 43 glycosylhydrolase"
                     /protein_id="HEY5446046.1"
                     /translation="SIGFTEGPHLYKRKGFYYLLTAEGGTGWGHAVTLARSQFVNGPY
                     ELHPDNYILTSRNRPEAELQRAGHADLVETQNGETYMVHLCGRPLRNRGRCTLGRETG
                     IQKMKWDENGWLFTDDRDPVPRMEITGPGLPIHEFPRPAVRDNFDKPQLSIDFQWLRS
                     PWPNELFSLTEHPGHLRIFGRELIGSPFRQGLVARRQQSHCYSATTSVQFAPEDFQQM
                     AGLICYYNSAKFHYFYISYDDTIGKHLRVMSSFPDQVNTDVFTAPTPIAANGPVELRV
                     EVDFERLRFAFRTAKQSWTWMPEVFDASILSDEATAPGLPNFTGAFVGMCCQDTSGLG
                     RPADFDYFEYDERDYQPHIEEL"
     gene            1069..>1361
                     /locus_tag="VIJ87_16565"
     CDS             1069..>1361
                     /locus_tag="VIJ87_16565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HEY5446047.1"
                     /translation="MKKPQASRRKFIKETVTSAAGLLALSALPGKTAIAHDPVTTRRK
                     EEMADGTPRLRFSVIGINHDHIHSQVGATIRGGGQFVSFYAKEPDLAAAFAKR"
BASE COUNT          336 a          355 c          348 g          322 t
ORIGIN      
        1 ctcgatcggg tttactgaag gaccacacct ctacaaacgt aaaggtttct attacctact
       61 gacagctgaa gggggtacgg gctggggtca cgcagttacg ctagcccggt cgcagtttgt
      121 aaacggcccg tacgaacttc atccggacaa ctacattctt acctctcgca atcgaccaga
      181 ggcagaatta cagcgagcag gccatgccga tctggtggag actcaaaacg gtgagaccta
      241 catggttcat ttgtgtggtc gtcccttaag aaatcggggg cgctgcacac tcggacgcga
      301 aactgggatc cagaaaatga agtgggatga aaacggctgg ctcttcaccg atgatcgtga
      361 ccccgttccg cgcatggaaa tcacaggacc aggtctgcct attcatgagt ttcctcgtcc
      421 ggccgttcgc gataactttg ataagcctca actctcaatt gattttcagt ggctgcgttc
      481 accgtggcct aatgaactgt ttagcctgac cgagcatccc ggtcacctgc gtatctttgg
      541 tcgagagttg attggcagcc cctttcgaca aggcctggtc gcacgccgtc agcaatcgca
      601 ctgttacagc gctacgactt cggttcaatt tgcccctgaa gattttcagc agatggcggg
      661 actcatttgc tactacaata gtgccaagtt tcattacttc tacatcagtt acgacgatac
      721 gattggcaag cacttgcgag taatgtcttc gtttcccgat caggtcaata cggatgtgtt
      781 cactgcaccc acaccaattg ctgctaacgg tccggtggag cttcgtgtag aagttgattt
      841 cgagcggctt cggtttgctt ttaggaccgc taaacaatca tggacgtgga tgcctgaagt
      901 ttttgatgcg agtattctct ccgatgaagc aacagcacct ggtcttccca actttaccgg
      961 agcatttgtg ggaatgtgtt gccaggacac atcaggacta gggcgaccag cagacttcga
     1021 ctacttcgaa tacgacgagc gcgactacca accgcatatt gaggagctat gaagaaacca
     1081 caagcaagca gacgaaagtt tattaaggaa accgttactt cggcagctgg cttactagca
     1141 ctgtcggcac tgccaggcaa gacggcaatc gcacatgacc ctgtcacaac gcggagaaaa
     1201 gaagaaatgg cggacggaac accacggcta cgcttttcgg ttatcgggat taatcacgat
     1261 cacattcaca gccaagtcgg cgcaacgatt cgcggcggcg gacagtttgt ctccttctac
     1321 gcgaaagagc ccgatttagc tgcggccttt gcgaagagat a
//
LOCUS       DATCGC010001732         1222 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_490641, whole genome shotgun sequence.
ACCESSION   DATCGC010001732 DATCGC010000000
VERSION     DATCGC010001732.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1222)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1222)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1222
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_490641"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            132..>1222
                     /locus_tag="VIJ87_16570"
     CDS             132..>1222
                     /locus_tag="VIJ87_16570"
                     /inference="COORDINATES: protein motif:HMM:NF028479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-bladed beta-propeller"
                     /protein_id="HEY5446048.1"
                     /translation="MSEQDVWNANKQAISTYVAGNKNLKLIWERDPKTERIITAYQSL
                     RGLGTEDSLSFSFGGRTRTFYVLNIPNNNIRQFKKRVKALPATPATPVSQFDSADEGV
                     ATMFEGGAGADEGQFDSPAAIAVDASGNVFVADTGNGRIEKFSPTGAFLASIRTKGSG
                     HGQFSEPSGIAIDRDGNIYVAEIGSKHRVQKLGSDGTFIAEWAPGLYGPRRIAIGPDD
                     SIYVVDSGRNRIVKFSPDGQVLTTWGSEGSGDGQFSGFSSVAVEPTTNKVYVADSLNK
                     RIQIFDSTGKFLTKWAVPEWGQPLGFEDLAIDPEKGRLYASSAHTNIILVFDLQGNRI
                     GTLTPKPADKLEGPSALALSNRKLYVLNMA"
BASE COUNT          298 a          302 c          339 g          283 t
ORIGIN      
        1 cagggattcc gactcctggt tacgaaacat tcctctgtgc gctggaaccc tattcaatca
       61 ttcacctgtt tctacacgat tacgacgacg cgaaggtgct atcgttttgt gggggaagtc
      121 cttttttcgt catgagcgag caagacgtgt ggaacgcgaa caaacaggcc atctcaactt
      181 atgttgctgg caataagaat ctgaagctga tctgggaacg tgatccaaaa accgaaagga
      241 taatcacagc ataccaatca ctccggggac ttgggacgga ggattcgctt tccttttctt
      301 ttggcgggag aacaaggacg ttctatgtct taaacatccc taacaacaac attcgccaat
      361 ttaaaaagcg cgtgaaagcg ttgcctgcga cgcctgctac gccggtatcc cagttcgact
      421 cggccgatga aggtgtagca acgatgttcg aaggcggcgc gggagcggac gagggacaat
      481 ttgattcccc agctgcaatt gctgttgatg caagtggaaa tgtttttgtg gccgacactg
      541 gcaatggtcg catcgagaaa ttctcgccga ccggcgcgtt tctcgccagt ataagaacca
      601 aagggagtgg ccacggccaa ttctctgagc cgagtggaat cgcaattgat cgcgacggca
      661 acatatacgt cgcagagata ggctccaagc accgcgttca gaaactcgga tctgacggga
      721 ctttcatcgc tgagtgggcg cctggattat acgggccgcg ccggattgcg attggccctg
      781 atgattcgat ttatgtcgtc gattccggtc gcaaccgaat cgtgaagttc agtcccgatg
      841 gtcaggtgct tacgacctgg ggcagcgagg gaagtggcga cggacagttc agcggcttta
      901 gttcggtcgc ggttgagcct accaccaata aggtctatgt ggccgattcg cttaacaagc
      961 ggatacagat ctttgattca actgggaagt ttctaacaaa atgggcagtc cccgagtggg
     1021 gacagccact tggctttgag gacttggcta tcgatccaga gaaaggccgt ttgtatgcgt
     1081 cgagtgcgca tacgaacatc attctcgttt ttgatctcca ggggaacagg atcgggacct
     1141 tgacgccaaa gccagcagat aagctcgaag ggccatcagc cctggcattg tccaatcgga
     1201 agctctacgt cctaaacatg gc
//
LOCUS       DATCGC010001733         1269 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_92491, whole genome shotgun sequence.
ACCESSION   DATCGC010001733 DATCGC010000000
VERSION     DATCGC010001733.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1269)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1269)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1269
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92491"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..907)
                     /locus_tag="VIJ87_16575"
     CDS             complement(<1..907)
                     /locus_tag="VIJ87_16575"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEY5446049.1"
                     /translation="MRPESDVKLGAREQVGDFLYGENPVSGSTDSIQPTPEELGVLSG
                     FERFAFRFVRCMNQGRWKRFWTFCQRTLGAGWIHLSTYNIMNVYGLENVEAASRERPI
                     LLVANHRSFFDMYAVSTVLFRGTKWRKQLFFPVRGRFFYQSPLGLLVNLVMGWFSMYP
                     AFFATGDHPIPEKRVFDKFSFRLLTQLAQTGPGNLIGFHPEGTRNKSNDPYNFLRAQP
                     GVGKLIMEARPQVIPVFIAGLCNSLPKQIARNWNREEVIRIHFGPLMDLSDELKKPDR
                     LRTHKEISDLVMKKIAELGEQDRASR"
     gene            complement(936..>1269)
                     /locus_tag="VIJ87_16580"
     CDS             complement(936..>1269)
                     /locus_tag="VIJ87_16580"
                     /inference="COORDINATES: protein motif:HMM:NF014961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008705 - methionine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="vitamin B12 dependent-methionine synthase
                     activation domain-containing protein"
                     /protein_id="HEY5446050.1"
                     /translation="YADYLYFHGLSVESAEALAELWHKRIREELGIAGSDAKDLSKLF
                     HQAYQGSRFSFGYPACPRLEDQEKLFALIDPSRIDVSLTEEFQLEPEQSTSAIIVHHP
                     EAKYFSID"
BASE COUNT          332 a          334 c          306 g          297 t
ORIGIN      
        1 tccttgacgc gcgatcctgt tcaccaagtt cagcgatctt cttcattacc agatcggaaa
       61 tctccttgtg cgtacgtaag cgatcgggtt tcttgagttc gtcagaaaga tccattaagg
      121 gtccgaagtg aattctgatc acttcttcgc ggttccagtt tcgcgcaatc tgctttggca
      181 gactattaca cagcccggca ataaaaacag ggattacctg cggcctcgct tccattatca
      241 acttaccgac tccaggctgt gcacgcagaa agttgtaggg atcattgctc ttattgcggg
      301 tcccttccgg atgaaacccg atcaagtttc ctggtcccgt ttgtgcaagt tgtgtcagta
      361 acctgaaaga aaacttgtcg aagactcgct tctcgggaat cggatgatca cccgtagcga
      421 aaaatgccgg atacatcgag aaccagccca tcacaagatt taccaaaagg ccgagtggtg
      481 attgatagaa aaacctgccc cgcaccggga agaagagttg cttgcgccac ttggttccgc
      541 ggaaaagaac cgtcgacacc gcatacatgt cgaagaaaga acgatgattt gcaaccagga
      601 ggattggacg ttcacgagag gcggcctcga cattctcgag accgtagaca ttcatgatgt
      661 tgtacgtcga taagtggatc catccagcgc ccaaagttct ctgacaaaac gtccagaatc
      721 gcttccacct tccctggttc atgcagcgga caaatcgaaa ggcgaaccgc tcgaaccctg
      781 acagaacgcc taattcttca ggagtgggtt ggatcgaatc tgtgctaccg gagactgggt
      841 tttcaccata cagaaaatca cccacttgtt cacgagcacc aagttttacg tcggactcag
      901 gtctcaaccc tcactcccag tcatctcgaa tggattcaat cgatcgagaa gtatttcgct
      961 tcaggatgat gaacaataat agctgaggtt gactgttcgg gctccagctg aaactcctcg
     1021 gtcagcgaga catcgattct ggaagggtcg atcaaggcga acagtttctc ctgatcctcc
     1081 aaacgcggac aggctggata gccaaaactg aaacgagaac cctggtaagc ttgatgaaat
     1141 aactttgaca ggtccttcgc gtccgagccg gcaatgccga gttcctcgcg tatccgcttg
     1201 tgccataact cagccaatgc ctcggcactt tcgacgctca agccgtgaaa gtagaggtag
     1261 tcagcatag
//
LOCUS       DATCGC010001734         1414 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_92531, whole genome shotgun sequence.
ACCESSION   DATCGC010001734 DATCGC010000000
VERSION     DATCGC010001734.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1414)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1414)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1414
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92531"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..316)
                     /locus_tag="VIJ87_16585"
     CDS             complement(<1..316)
                     /locus_tag="VIJ87_16585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446051.1"
                     /translation="MFASILLFALLFQGGGQRQGQFPGQQQPTPTPQTNTPTTQQGGR
                     QQPSATPTPEEPPVVTKHSITVGGQTINYTATAGMMPIKNREGEVEARMFFTSYVVDG
                     PRR"
     gene            403..>1414
                     /locus_tag="VIJ87_16590"
     CDS             403..>1414
                     /locus_tag="VIJ87_16590"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: protein motif:HMM:NF000942.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009331 - glycerol-3-phosphate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0047952 - glycerol-3-phosphate
                     dehydrogenase [NAD(P)+] activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0046167 - glycerol-3-phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HEY5446052.1"
                     /translation="MSNMKRISVIGAGSWGTALAIVAARAGHEVILWSRNDEVVNSIT
                     DKRFNARYLSSTQIPHSVSATNDIYETLEGSSLVLLATPSHVVRALLTVMKPALNEGS
                     TIVSVAKGIEIESGKRVSEIVREVLGEQFSQRFVCLSGPSFAKEVVENHPTAIVAASS
                     SDESARTVQTALSFENLRIYTNTDVVGTELGGSVKNVMAIAAGMTAGLGYGSNSIAAL
                     ITRGLAELTRLALSQGAQVETLMGLAGLGDLVLTCTGSLSRNRFVGEELGKGRTIEEI
                     THGMNEVAEGIKTSRAVKRLAQKAGIEMPITSEVDAVLYEGKSASDAVAVLMSRPLRS
                     ETN"
BASE COUNT          339 a          317 c          424 g          334 t
ORIGIN      
        1 gacgccttgg cccatcaacg acatagctgg taaagaacat tcgcgcttca acttcacctt
       61 cacgattctt gatcggcatc atgccggcag ttgcggtgta attgattgtt tgtccgccga
      121 cagtaatcga atgttttgtt acgactggag gttcttccgg agtcggtgtt gcggatggtt
      181 gttgtctgcc accttgctgt gttgtcggtg tattagtttg gggtgttgga gtgggttgct
      241 gttgaccagg gaactgacct tgacgttgtc ctccgccctg gaagagcaga gcgaatagaa
      301 gaatagaagc aaacatgttg aattaggctc cgtattgggg aattctggaa aggcgttcag
      361 gcaggcgaat agtaagtcag gcgcaagtaa ggggcaagga caatgtctaa tatgaaacga
      421 atcagcgtga ttggtgccgg tagttgggga accgcattgg cgattgtggc tgcccgtgct
      481 ggacatgaag taatcctgtg gtcgcgaaac gatgaggtag taaattcgat cactgacaag
      541 cggttcaacg cgcgctatct ttcctccact caaatcccgc atagcgtttc agcgacaaac
      601 gatatttacg aaacactgga aggttcgtca ctcgtgttgc ttgccactcc gtcccacgtt
      661 gtccgtgcat tgctcaccgt aatgaagccg gctttgaacg aaggatcgac aatcgtcagt
      721 gtggcaaaag gaatcgagat tgagtcaggc aagcgcgttt cggaaatcgt gcgcgaagtg
      781 ctgggcgaac agttctcgca gcgctttgtt tgtttgtccg gtccatcgtt cgcaaaagaa
      841 gtcgtagaga atcatccgac agcaatagtt gcagccagta gcagcgacga gtcggcgcgc
      901 acagtacaaa ctgctttgag ttttgagaac ctccgcattt acacaaacac cgatgtggtc
      961 ggtaccgagt taggcggctc ggtaaaaaat gtaatggcga ttgcggctgg aatgacggcg
     1021 ggacttggat atggttcaaa cagtatcgca gcattgatta ctcgtgggct tgccgagctt
     1081 acgcggttag cgctgagcca gggagcacaa gtcgaaacgc tgatgggcct ggccggtctg
     1141 ggcgatctag tactgacctg caccggcagc ctgtcacgca atcgattcgt gggcgaggaa
     1201 cttggcaagg gccgcacaat agaagagatc acgcatggga tgaatgaagt ggccgagggt
     1261 atcaagacta gccgggcggt gaaacgactt gcgcaaaaag ctggtattga gatgccgatc
     1321 accagtgagg ttgacgcagt tctctatgaa ggtaagtcgg ccagcgacgc ggtcgcagtg
     1381 ttgatgagtc gaccacttcg ctccgagacg aatt
//
LOCUS       DATCGC010001735         1148 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_125352, whole genome shotgun sequence.
ACCESSION   DATCGC010001735 DATCGC010000000
VERSION     DATCGC010001735.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1148)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1148)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1148
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125352"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..322)
                     /locus_tag="VIJ87_16595"
     CDS             complement(<1..322)
                     /locus_tag="VIJ87_16595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446053.1"
                     /translation="MTYGYSLAKGFDINEERLRQGERISVTAGALSRLMADAYALMVR
                     LTARCKGYVQRQLRPQLSAHLPGPLKVRIQRLLQKNVSHQKAAGHGFVLEEHKQPPSY
                     HNSPQ"
     gene            complement(563..>1148)
                     /locus_tag="VIJ87_16600"
     CDS             complement(563..>1148)
                     /locus_tag="VIJ87_16600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446054.1"
                     /translation="FRTIMNSHWFLQSMVVRREILLKAGLFDTTLTIAEDRDIMARVA
                     LEGEFGFNKEVLVEIYRRTEPIRNLASARGSMQARKCFEKVFENLRRDRSLKLMERLT
                     LAKVRSANQRELGNLLLAQADARQARVAYKQALTAYPSLRSLIKYLVSLLPARFALIL
                     VRWGRWCDRHCIRPPGDFESFRYVRTPDATSSSR"
BASE COUNT          269 a          309 c          285 g          285 t
ORIGIN      
        1 attgcggcga gttatggtac gaaggcggct gcttgtgttc ttctaagacg aaaccatgtc
       61 cggctgcttt ttgatgagag acatttttct gaaggagacg ctgaattctg actttgagag
      121 gcccgggcag gtgcgcgctg agttgcggcc ttagttgtct ctggacgtac cccttacacc
      181 gagccgttaa ccgcaccatg agagcataag cgtctgccat cagacgagac aaagctccgg
      241 cggtaactga gattcgctct ccctgacgaa gccgttcttc attaatgtcg aaccctttcg
      301 ccaatgagta gccgtacgtc atgcctggcg accttgtccg gcgacagaag atcgcatcca
      361 attcaattcg aagccaagct gcagcagcct ctgaagaaca tggtgacagg ccacggaaag
      421 attcagggcc tcgtatcgcg aatagtgcat ctgtaagcag ggaaatcgag cggtggtcga
      481 tgagtttctt aaatgtttcg ttatcccgca ctcctgctcc ctattcggtg ggagctgccc
      541 gagggcacta ttttgtacgc tttcatcggc ttgagcttgt cgcatccggc gttcgcacat
      601 acctaaatga ttcgaagtcc ccaggcggcc ttatacaatg tcgatcgcac catctccccc
      661 atctcacaag gatgagcgca aacctggcgg ggagtaaaga tacaagatac ttgatgagtg
      721 atcttaagga cggatatgca gtcagcgctt gtttgtaagc aacacgtgcc tgccgcgcgt
      781 cggcttgcgc gagcaaaaga ttaccgagtt cacgttgatt cgcgctccta acttttgcca
      841 gcgtcagtcg ctccatcaac ttcaaactgc gatctctgcg gaggttttcg aacacttttt
      901 cgaaacattt tcgggcctgc atacttcccc gcgcggaagc aagatttcta atcggctctg
      961 ttcgccgata gatttctaca agaacttctt tgttgaagcc aaactctcct tcgagggcca
     1021 cgcgcgccat gatatcgcga tcttcggcaa tggtcaacgt cgtgtcgaac aatccagcct
     1081 ttaacaggat ctcgcgcctt accaccatcg actgcaaaaa ccagtgagaa ttcataattg
     1141 tacgaaac
//
LOCUS       DATCGC010001736         1334 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_224425, whole genome shotgun sequence.
ACCESSION   DATCGC010001736 DATCGC010000000
VERSION     DATCGC010001736.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1334)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1334)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1334
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224425"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..939
                     /locus_tag="VIJ87_16605"
     rRNA            <1..939
                     /locus_tag="VIJ87_16605"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          390 a          275 c          380 g          289 t
ORIGIN      
        1 cccgttaaat ccaactgctt aacagatggg ctgcggagga tactataaga ctaggaggca
       61 ggagaggcaa gcggtactca gtgggtaggg gtaaaatccg ttgatccatt gaagaccacc
      121 agtggcgaag gcggcttgcc agaacgcgct cgacggtgag ggatgaaagc tgggggagca
      181 aaccggatta gatacccggg tagtcccagc tgtaaacgat gcagactcgg tgatggacta
      241 gcttaatgct agtccagtgc cgcagggaag ccgttaagtc tgccgcctgg ggagtacggt
      301 cgcaagactg aaacttaaag gaattggcgg gggagcacca caaggggtga agcctgcggt
      361 tcaattggag tcaacgccgg gaatcttacc gggggcgaca gcagaatgaa ggtcaagctg
      421 aagactttac cagacaagct gagaggaggt gcatggccgt cgccagctcg tgccgtgagg
      481 tgtcctgtta agtcaggtaa cgagcgagac ccctgcttct agttgctact tctattcttc
      541 ggagtagaag ggctaattag aaggactgcc gccgctaagg cggaggaagg agggggctac
      601 ggcaggtcag tatgccccga aaccctcggg ccacacgcgg gctgcaatgg taaggacaat
      661 gagtttcgat tccgaaagga ggaggcaatc tctaaacctt accacagtta tgattgaggg
      721 ctgaaactcg ccctcatgaa tatggaatcc ctagtaaccg cgtgtcacta tcgcgcggtg
      781 aatacgtccc tgctccttgc acacaccgcc cgtcgcttca tcgaagttgg ttcttggcga
      841 ggtggtgcct aattggtact atcgaacctg gggtcagcaa cgagggagaa gtcgtaacaa
      901 ggtggccgta ggggaacctg cggccggatc acctccttag ttatcatatc ttgcaacaca
      961 gaacaataga caaaaagaga aaaatgggtg aagaagaagg agaactaaca atgttagttg
     1021 tgacctcaaa acaaacatga aaatagtcag tttaatcatc tctaatgaaa tgttggtata
     1081 cataattgac aatttttgca gtggtatctg tgcaaatgtt ataatgaata tttatcggtg
     1141 tttatctgat ctttttgcgt atcaaataat cagtacacat aaaccaatag gtaaagtaaa
     1201 ccaataggaa aaagaatacg gatgcaattc tttgtcacga aactgaggag ttggaaagac
     1261 aaaggatgaa ggtgacgtag caggcaacac cctagagata aacaaaaaat gtggtgttgt
     1321 ttgcgatgat gtcg
//
LOCUS       DATCGC010001737         1219 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_92574, whole genome shotgun sequence.
ACCESSION   DATCGC010001737 DATCGC010000000
VERSION     DATCGC010001737.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1219)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1219)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1219
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92574"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1146)
                     /locus_tag="VIJ87_16610"
     CDS             complement(<1..1146)
                     /locus_tag="VIJ87_16610"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEY5446055.1"
                     /translation="MYLRSTPGPGTQVGGAASHIKGVVEGLIQLGASVEMVSNDRIAG
                     FDETKAPVTLIEPVSSGGTRAMFDINNNLNFTRALLPLINGNAPDFMYQRYARFSWAG
                     VAAALKAKRPLFLEYNGSEVWVGRYWDRVGKLDLLERYERLNLEAATRIFVVSDVERR
                     NLERRGVDPAKIVINPNGVDSTVFHPGVGGNEARQKLGLTQDEVVVGFVGTFGPWHGV
                     LVLAEAIKAISCSVPIRFVFVGNGSLHGDVQLLLQNECERKRVIFTGPVKHGEVPALL
                     DACDVLASPHVPLTDGSEFFGSPTKLFEYMAMGKGIVASRLGQIGEVLRDNETALLVE
                     PGNAKALAAAIQRLAESLSLRKCLGENARAVAVRSYTWKHNAQRVLDA"
BASE COUNT          281 a          368 c          297 g          273 t
ORIGIN      
        1 agcatcaagc acgcgctggg cgttgtgctt ccaggtataa ctccgcacag caactgcgcg
       61 cgcgttctca ccgaggcact ttcgcaggga caaagattca gccagacgct gaattgccgc
      121 cgccagggct tttgcattac cgggctcgac cagcagcgcc gtctcgttat ctcgcaacac
      181 ttcaccgatc tggcccaggc gactcgccac gattcccttc cccatcgcca tgtactcaaa
      241 caactttgta ggcgatccga aaaactcgct gccatccgtc aacggcacgt gcggcgatgc
      301 cagaacgtcg cacgcgtcga gcaacgcagg tacttctcca tgcttaacag gaccggtgaa
      361 aatcactcgt ttgcgttcac actcgttctg caatagcagt tggacatctc cgtgcaagct
      421 accattgcca acaaacacaa aacgaattgg gacactgcaa gatattgcct tgatcgcttc
      481 cgccagaacc aacactccgt gccagggacc aaaggtaccg acgaaaccaa ccactacttc
      541 gtcttgcgtc agccctaact tttgccgcgc ttcgttgccg ccaactcccg gatgaaagac
      601 ggtcgagtcg acaccattgg gattgatgac aatctttgcc ggatcaactc ctctgcgctc
      661 aaggttccga cgctcgacat ccgacacgac aaaaatgcgc gtagcagctt cgagatttaa
      721 tcgttcgtag cgctccagta gatcgagttt gccgacacgg tcccaataac gaccaaccca
      781 aacttccgac ccgttgtatt cgaggaataa cggtcgcttc gcctttaatg ctgcggcaac
      841 tcctgcccaa ctgaaacgcg cataacgttg gtacataaag tcgggagcgt ttccattaat
      901 caacggaagc agagcgcgtg tgaagttgag gttgttgttg atgtcaaaca tggcccgcgt
      961 tccgccagac gacacgggtt cgatcaaggt aaccggggct ttcgtctcgt cgaatccagc
     1021 gattcgatcg ttactaacca tttctacgct ggcgccgagt tggatcagcc cttcgacaac
     1081 tcccttgatg tgacttgctg cgccgccaac ttgcgtacct ggtcccggcg tcgaccttag
     1141 atacatgatg cgcggatgct gggatgcacg tcgttcaatc gggactctat cgttttgtat
     1201 ggcttgttcg agacgaatg
//
LOCUS       DATCGC010001738         1708 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_92594, whole genome shotgun sequence.
ACCESSION   DATCGC010001738 DATCGC010000000
VERSION     DATCGC010001738.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1708)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1708)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1708
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92594"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..391
                     /locus_tag="VIJ87_16615"
     CDS             <1..391
                     /locus_tag="VIJ87_16615"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HEY5446056.1"
                     /translation="LEKLGDGVRRITNGYGADIVIDGVGGEVLSEAVGALALEGRLTT
                     LGYSASRQATIDVTNLIVPQASIRGLNMFAQPKTSIRAAWKVIVSLLKAGAIKPIVAR
                     TFPLEEAAAALRYLVEGRPFGRVVLTI"
     gene            416..790
                     /locus_tag="VIJ87_16620"
     CDS             416..790
                     /locus_tag="VIJ87_16620"
                     /inference="COORDINATES: protein motif:HMM:NF016162.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF427 domain-containing protein"
                     /protein_id="HEY5446057.1"
                     /translation="MKEKQMKVPDSDHPIFIERNPARVVVSIAGHVIADTRKALTLRE
                     ADYSPVQYIPREHVDFTQLEKTDHATYCPYKGDCNYYSVPAGGEKSVNAVWTYEDPYP
                     AVAQIKGHVAFYPDRVDEITER"
     gene            814..1203
                     /locus_tag="VIJ87_16625"
     CDS             814..1203
                     /locus_tag="VIJ87_16625"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEY5446058.1"
                     /translation="MQEKNKALVLEAFDTLFNKRDYEAAERYWSPNYIQHSAHIEPGR
                     DGLFNLIRSSPPTLRYEHQLIAAEGDYVIVHGRFSGTGRPVAWVAADIVRIENGRLAE
                     HWDVLQDEATKAESKSGLPMFGEHFTA"
     gene            1302..>1708
                     /locus_tag="VIJ87_16630"
     CDS             1302..>1708
                     /locus_tag="VIJ87_16630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007406877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HEY5446059.1"
                     /translation="MKAIHLTAYGNPARNLRMVEVSEPNAPSASEALVRMEYAPIDYS
                     DLLLANGVYFLNPKLPSVIGGEGAGIVEAVGPGVTSVKVGDRVTIPFGTFTWADKVLA
                     PAEGLFVVPPSIDARTASMLNINPTTAVLLLDE"
BASE COUNT          428 a          448 c          459 g          373 t
ORIGIN      
        1 gttggagaaa ttaggggacg gcgtgcgtcg tatcaccaac ggttacggcg cagacatcgt
       61 catcgacgga gtcggtggtg aagtcctgag cgaggcagtc ggagcgctcg cgttggaagg
      121 acgcctcaca acactgggat attccgcaag ccgtcaggcg actattgacg tgacaaatct
      181 cattgtgcca caggccagca tccgaggtct caacatgttc gctcaaccga agacaagcat
      241 cagggctgcc tggaaagtta ttgtctctct actgaaagcc ggtgcgatca aaccgattgt
      301 ggccaggacc tttcctctgg aagaagcggc tgccgctctc cgttacttag ttgaaggccg
      361 tcccttcggc agagtcgtcc ttacaatctg aggagttcca aaaggaaaac gaaacatgaa
      421 agaaaaacag atgaaggttc cagattcaga tcatccgatt tttatcgagc gcaatccggc
      481 tcgcgtggtg gtgtccatcg cgggccatgt aattgcggat actcgcaagg ccttaactct
      541 tcgggaagcg gactactcac ccgttcagta cattccgcgt gagcacgttg atttcactca
      601 gttggaaaaa acggatcacg ccacctactg tccgtacaaa ggcgattgca attactacag
      661 tgttcctgct ggaggagaga agtcggtcaa cgcggtgtgg acctacgagg atccatatcc
      721 ggccgttgcg caaatcaagg gacacgtcgc gttctatccg gatcgcgtcg acgagataac
      781 agagcgataa gagaacttgt tatgagccaa acgatgcaag aaaaaaacaa agcgctagtg
      841 ctcgaagcgt tcgacacgct gtttaacaag cgggactatg aagcagctga acggtattgg
      901 tcgcccaatt acattcagca cagcgcgcac attgaaccgg gtcgcgacgg attgttcaat
      961 ttgatccgaa gctcaccccc tactctgcgt tacgaacatc agctcatcgc cgcggagggc
     1021 gactacgtca ttgtgcacgg acgattttca ggaaccggcc ggcctgttgc ctgggtcgcc
     1081 gcggatattg tcaggatcga aaacggccgc ctagccgaac actgggacgt gttgcaagac
     1141 gaggcaacca aagccgaatc gaagagcggc ctgccgatgt ttggcgaaca cttcactgcc
     1201 tgaaccagct tatctcaaat taaggagacc tctatgaaac tcacagaaaa cacgatcttc
     1261 atcaccggcg gaggcacggg cattggtcgt ggccatccta gatgaaagcc attcatctca
     1321 ctgcctacgg taatccagct cggaacttaa ggatggtcga agtttcggaa ccaaacgcgc
     1381 cgtctgctag cgaagctctg gtgcgcatgg aatatgcgcc gattgattac agcgacctcc
     1441 ttttagcgaa cggagtttac tttttgaatc cgaagcttcc ttctgtcata ggaggtgaag
     1501 gtgcgggaat cgtcgaggcg gtcgggccgg gagtcaccag cgtcaaagta ggcgatcgtg
     1561 ttacgatccc atttggaaca ttcacctggg ctgacaaggt ccttgctcca gccgaaggtc
     1621 ttttcgtcgt tcctccttca atcgatgcca gaacggcctc gatgttaaac atcaatccta
     1681 cgaccgcagt tcttctctta gacgaatt
//
LOCUS       DATCGC010001739         1241 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_389777, whole genome shotgun sequence.
ACCESSION   DATCGC010001739 DATCGC010000000
VERSION     DATCGC010001739.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1241)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1241)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1241
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_389777"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..495
                     /gene="eno"
                     /locus_tag="VIJ87_16635"
     CDS             <1..495
                     /gene="eno"
                     /locus_tag="VIJ87_16635"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016387099.1"
                     /note="catalyzes the formation of phosphoenolpyruvate from
                     2-phospho-D-glycerate in glycolysis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEY5446060.1"
                     /translation="YPIVSIEDGMAENDWAGWKLLTDEVGKRVQLVGDDLFVTNTEFL
                     QKGIDLGVANSILIKVNQIGTLTETLDCIQLAQTNRRTAVISHRSGETEDPFIADLAV
                     ATNAGQIKTGSLSRTDRIAKYNQLLRIEDDLQGSARFPGRKAFHQIESGKTPRAGKTR
                     AAKR"
     gene            532..1071
                     /locus_tag="VIJ87_16640"
     CDS             532..1071
                     /locus_tag="VIJ87_16640"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY5446061.1"
                     /translation="MWLEYLPIVRDRSHTLLRRGTDSIPGMFQLDNDKLKFIGQWERD
                     GFVITTDKNRLDVQFIHEFLSNTSYWATSRSLEQVERSIDNSLNFGLFKDDRQIGFAR
                     VVTDYATFAWLADVFIVDQYRGLGLGVWLIDVITSHPQLQGFRRWLLATRDAHELYRR
                     FGFTEVTEPKRWMERTISQ"
BASE COUNT          312 a          312 c          322 g          295 t
ORIGIN      
        1 tatccaattg tctccatcga agatggcatg gctgaaaacg actgggccgg ttggaaacta
       61 ctcacggatg aggtcggaaa gagagttcaa ctcgtcggcg atgatctctt cgtgaccaat
      121 acagagtttc tgcaaaaggg aatcgacctg ggagtagcaa actcaatcct gatcaaggtt
      181 aaccagatag gaacgcttac cgaaacgctt gactgcatcc agctcgccca aacgaatcgc
      241 cgcactgccg ttatttcgca tcgatcaggc gaaactgaag accccttcat tgcggatctc
      301 gcagtcgcca ccaatgctgg tcaaatcaaa accggttcgc tatctcggac cgatcgaatt
      361 gcaaaataca atcaactgct ccgcattgaa gatgacttgc aaggctcagc gcgttttcct
      421 ggacgcaaag cgtttcatca gattgaaagt ggaaagacgc ctcgtgcagg taagacacgc
      481 gcggcaaagc gttgaactga gggccaccag tcagtaccac gacgcggtag cgtgtggctc
      541 gagtatctgc ctatcgttcg tgaccggagc cacacgctac tgcgtcgtgg taccgactcc
      601 attccgggga tgttccagtt ggacaacgac aaactaaagt ttatcggaca gtgggaacga
      661 gatggcttcg tcatcaccac tgataagaat cgtctggacg ttcagttcat ccacgaattt
      721 ttgtccaaca cttcttactg ggccacgagt cgaagtcttg agcaggttga acgctccatc
      781 gataactcac taaactttgg gttgttcaag gatgatcggc aaatcggatt cgcccgtgtc
      841 gttactgact atgcgacgtt tgcctggttg gcggacgtct tcattgtcga tcagtaccgc
      901 ggactcggtc ttggcgtttg gcttattgac gttataacgt cgcatcctca actccagggt
      961 ttccgccgat ggcttctggc aacacgtgac gcgcatgagt tgtatcgccg gtttggtttc
     1021 acggaagtca cagaacccaa acgatggatg gaacgaacca ttagccaata gaggtgacga
     1081 ttgaacaata cgagagggcc actggcatta atcatcatcg acggttgggg ttattcgcct
     1141 gatagcgagg gaaacgcgat cgctcttgca gcaactcctt attatgacga gttggttgcg
     1201 aagtatccac agactctatt ggaagcgcat ggttcacgtg t
//
LOCUS       DATCGC010001740         2496 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_389797, whole genome shotgun sequence.
ACCESSION   DATCGC010001740 DATCGC010000000
VERSION     DATCGC010001740.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2496)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2496)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2496
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_389797"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            280..786
                     /locus_tag="VIJ87_16645"
     CDS             280..786
                     /locus_tag="VIJ87_16645"
                     /inference="COORDINATES: protein motif:HMM:NF017103.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF721 domain-containing protein"
                     /protein_id="HEY5446062.1"
                     /translation="MQDTLTPFGLAASSSLHFKPFMEDLIKSLSSVVRAAGNSPEVTE
                     AAAIAAWKYVAGTGMRPHAIATKLEGSTLVVDVRDTIWQTQLTMMRSQLLFRVNSALG
                     QALVSKIELRVNPKAMLVEKPHKHDADILDNEVPIDLWSAASEIEDRQLRQKFLKAAT
                     GMLRRKGK"
     gene            1264..1776
                     /locus_tag="VIJ87_16650"
     CDS             1264..1776
                     /locus_tag="VIJ87_16650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446063.1"
                     /translation="MTTPYERRQEPPAESRRTMIIIVAIGAAIVIALFFFILMRSTRS
                     DPGVEPTLQGAIRPGSPEFDQNVKNIALDDPEADEAKRALGDTVMSLRTTVRNLTGKT
                     LSGLEMRAAVIDHQGNPVKQRTVIVVPTRQAELAPNKTVNVQVMLEGMSDTDDRANIK
                     MEVTGFKFKE"
     gene            1907..>2496
                     /locus_tag="VIJ87_16655"
     CDS             1907..>2496
                     /locus_tag="VIJ87_16655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446064.1"
                     /translation="MKTQRTAWRWGFVATSAIVIVTALPQFLFLMNRGSSWHGANAAM
                     HPDEVAYSDYVASLIRGRPRRNDPFTGRSVQSAAPVPESLFSIQVIPPYLSALPARWL
                     GLSASTVFILGPLLLAAASSLALFWFMSLLTRDGRLSASAVCFIFGFGTLIARQGILR
                     YVPNLNFLIPMWLSERVLPASAYHLPFLRFYQPAIG"
BASE COUNT          629 a          611 c          635 g          621 t
ORIGIN      
        1 agtccagcct aagggcagca aacctgatgg agaacgtggt ccctgagcgc accctgtcct
       61 gcagaagctt ggacttgaac ggctttgcct caaaggtcga atctaactcg aggttcgagt
      121 gttttggttc ctgtgacttc gtggatcgtc tttagttttt tggacaaaag gaacgatcca
      181 cgcgcatcac acgaactgaa cacgaaactc gttaccaccg aaatcgaatc ttgaggcaaa
      241 gcggacgtga acaaacttca cactccgttt ggaatatttt tgcaagacac tctaacgcca
      301 tttggtctgg ccgcaagttc ttcgttacac ttcaaacctt tcatggagga tttgatcaaa
      361 tcgttatcaa gcgttgtgcg cgccgccggt aattcacccg aagtgactga ggctgcggcc
      421 attgctgcat ggaaatatgt ggctggaact ggaatgcggc cacacgcaat agcaacaaag
      481 ctcgagggaa gcacattggt tgtcgatgtg cgcgatacaa tctggcaaac gcagttgacg
      541 atgatgagga gccaactact gtttagagta aactcggcgc tgggccaagc gttagtcagc
      601 aaaattgagt tgcgggtgaa ccccaaggct atgctggttg agaaacctca taagcacgac
      661 gccgacattc tcgacaacga agttccaatc gacttgtggt ccgcggccag cgagattgaa
      721 gatagacaac tccggcagaa attcttgaaa gccgcaacgg gaatgttgag acgaaaagga
      781 aagtagaatg tccgatatgc ttcagcttgt cgttaaggtc cggtcaaggc gtcctcaatt
      841 tgataatcga caaggtaaag agccacttgc aaaagtcagg agttgtgatc agattaagag
      901 cggagttcat taggctctca ttcattaggc tctcattctc cccaagcttc agcttggggt
      961 tacagtgcgc tctcagtact ctggaaccgt tttaacggtt tacccaatgt gcgaatcaat
     1021 aagaatgcta atgacttcgg cgtggagctt gattggctct aaaccgtaaa ccgttaaaac
     1081 ggttcgtcaa aagtgtagcc ctaccgtaaa ccccaagctg aagcttgggg agaatgagag
     1141 ttttgcaaga ggctctgaag cctatcggac aatggaaccc gttcagacaa accgactcta
     1201 atcattccga ggtgatcgac tacattgcaa aaggattttt ccgtctctaa aatcccaaac
     1261 accatgacaa caccttatga aaggcgacaa gaaccgccag cagaatcgcg tcgcacgatg
     1321 atcataatcg ttgcaattgg cgcggcgatt gtcattgcac tgttcttttt catcctgatg
     1381 cgttcgacga gaagcgatcc tggcgttgaa ccgactttgc agggggcgat aagacctggt
     1441 tcgcccgagt ttgatcagaa cgtcaaaaac attgctttgg atgatccgga agctgacgag
     1501 gcgaagcgag cgctcggcga cactgttatg tctttgcgca cgaccgtcag aaacctaacc
     1561 ggaaagactc tgagtggtct ggaaatgcgg gccgctgtta tagatcacca gggcaatcca
     1621 gtgaaacaac gaacagtgat tgttgttcca actcgtcagg cagagctggc gcctaacaaa
     1681 acggttaacg tccaggtgat gttggaagga atgagcgata cggatgatcg cgccaacatc
     1741 aaaatggaag tgacaggttt caagttcaaa gagtagacgc taaccttgac caaaaagtct
     1801 ctcagtcgag agcgagacac cacatagttt cacctcaccc aaattttcaa agtggacgcg
     1861 ggtcctctgt tttccgaagg gattacagat cgttagggac gagtagatga aaacacagcg
     1921 tacggcttgg cgatggggct tcgttgccac gtcggcgatt gtgatcgtaa ccgcgctgcc
     1981 acagttcttg tttcttatga atcgcggctc ctcctggcat ggagcaaatg ccgcgatgca
     2041 tcctgacgag gtggcgtatt cggattacgt tgcctcacta attcgcggtc gccctcgccg
     2101 aaatgatcct ttcactggtc gtagtgttca gtcagctgcg ccagtaccag agtctttgtt
     2161 ttcgattcag gttattcccc cgtacctgtc agcccttccg gcacgttggc tgggcttatc
     2221 ggcctccaca gttttcattc ttggaccttt gttattggcg gccgccagtt cactggcact
     2281 cttctggttc atgtcattgc tcacacgcga cggtcgactc tccgcatccg cagtctgttt
     2341 catttttggt ttcggaactc ttatcgctag acagggaata ctgcggtacg tgccaaattt
     2401 gaacttcctg atacccatgt ggttgtcaga acgggtattg ccggcctccg cttatcattt
     2461 gccatttctt cggttctatc agccggcaat tggatt
//
LOCUS       DATCGC010001741         1553 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_490828, whole genome shotgun sequence.
ACCESSION   DATCGC010001741 DATCGC010000000
VERSION     DATCGC010001741.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1553
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_490828"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1512)
                     /locus_tag="VIJ87_16660"
     CDS             complement(<1..1512)
                     /locus_tag="VIJ87_16660"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HEY5446065.1"
                     /translation="MPSPESVVWTLTTQLAGAASAVLFYLSIIHRDFSYGLLGLLISA
                     LTHLLYHFNERRLEDVRTAEADRRRHVEEMATIHMNTIESLAIAIDAKDQTTHGHVRR
                     TQIYATQMGKLFKVTEPEVQALLAGALLHDIGKLAVPEYILNKPGKLTEAEFAKMKIH
                     PTVGGDILRRVNFPYPVEDIVRYHHEKWDGSGYPKGLKGESIPLVARIISVVDFYDAT
                     RCDRPYRKGMKREESLALLRNMVGSAFDPQVVEKFIEHVVEFDNLIDSEDIQEQVASE
                     TPSVDNDTMTKPDAGLASDIMGTPNDDGAGFRSITEAQREVFALHEIAQTIGSSLNLN
                     DTVTLVSNKLKAIVPFDSCIIFVVDERSGKATAAYASGEDAEVFSHRRMNVGDGITGW
                     VIANCRSMCNASPELDLVGLPEEVAKQYRGVLVSPLLREDGAFGAITLYSKTRTSYTT
                     EHVRLLESVCQHASSALNNALTYEKTRESALVDPLTELPNARGFYMMLEQRIAE"
BASE COUNT          362 a          406 c          401 g          384 t
ORIGIN      
        1 ctcggcgatt cgctgttcga gcatcatgta gaagccgcgc gcattaggca gttctgttag
       61 cggatcaacc agtgcgctct ccctggtctt ctcatacgtc aaggcattgt tcagggcgct
      121 tgaggcgtgc tgacagacag actcaagtaa gcgcacgtgt tcggttgtgt atgacgtccg
      181 agtcttggaa tagagcgtaa ttgcaccaaa ggctccatct tcacgaagga gcggggatac
      241 aagcacaccg cgatattgtt tagcgacttc ttccgggaga ccaacgaggt cgagttccgg
      301 cgaggcgttg cacatcgaac ggcaattggc gatcacccaa cccgtaattc cgtcgccaac
      361 attcatacgt cgatgtgaga acacttcggc gtcctcacct gatgcatatg cggctgtcgc
      421 tttacccgat cgttcatcga ccacaaaaat aatgcagcta tcgaagggaa cgatggcctt
      481 aagcttgttc gacaccagcg tgacagtgtc atttaggttg agcgacgaac caatcgtttg
      541 cgcgatttca tgaagggcga agacttctcg ttgagcctct gtgatcgagc ggaaacccgc
      601 accatcgtca tttggggtgc ccataatatc ggacgcaaga cctgcatccg gctttgtcat
      661 cgtatcgtta tcgacggaag gcgtttctga agcgacctgc tcctgaatgt cctcagagtc
      721 aatgagattg tcaaattcga cgacgtgctc gataaacttc tcaaccacct gcgggtcaaa
      781 ggcgcttcct accatgtttc gcaaaagcgc gagggattct tcgcgcttca tgcctttacg
      841 atatgggcga tcacaacgtg tcgcatcgta aaagtcgact actgaaatga tgcgcgcaac
      901 caacggaata gactctccct ttaaaccttt ggggtaacca cttccgtccc atttttcgtg
      961 gtgataccga acgatatctt cgaccgggta agggaagttg acgcgtctca aaatgtcgcc
     1021 accaaccgtt gggtggattt tcattttggc aaattcagct tcagtgagtt ttcccggctt
     1081 gtttaggatg tattccggaa cagcaagctt gccaatatcg tgaagcagcg ctccagccaa
     1141 taaggcttgc acctcgggct cagtcacctt aaacagctta cccatttgcg tcgcatagat
     1201 ttgcgtgcga cgaacgtgcc catgggtggt ctgatctttt gcatcgatag cgattgcgag
     1261 cgactcgatc gtgttcatgt ggatcgtcgc catttcttcc acgtgacgac gtcggtcagc
     1321 ttcggccgtt ctgacgtctt caagtcttct ctcattgaag tgatacagca aatgagttag
     1381 ggccgagatc aataagccca gaagcccgta ggagaaatcc cggtgaatga tcgacagata
     1441 gaaaagcacg gctgacgctg cgcccgctaa ctgggtagtt aacgtccata cgacgctttc
     1501 gggtgatggc atccacttca gttttccagc gtcgatgctg cggaaccacg agg
//
LOCUS       DATCGC010001742         1218 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_58776, whole genome shotgun sequence.
ACCESSION   DATCGC010001742 DATCGC010000000
VERSION     DATCGC010001742.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1218)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1218)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1218
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58776"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            81..465
                     /gene="ssrA"
                     /locus_tag="VIJ87_16665"
     tmRNA           81..465
                     /gene="ssrA"
                     /locus_tag="VIJ87_16665"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            515..1063
                     /locus_tag="VIJ87_16670"
     CDS             515..1063
                     /locus_tag="VIJ87_16670"
                     /inference="COORDINATES: protein motif:HMM:NF017496.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Uma2 family endonuclease"
                     /protein_id="HEY5446066.1"
                     /translation="MATTTHSVTADELMRLSDDGHRFELVKGELLTMSPTSGKHGVVA
                     MRLSRFLANYIEDSDLGLTFAAETGFRLEHDPDTVLAPDFAFVSRDRISTLPDDGYVR
                     LAPDLVVEVISPSQSDKEMRLKAGLWISLGVKQVWLVQPKKRTVELFVKTDEHVLLRE
                     KDELTGGELIPGFRIRVSEIFS"
BASE COUNT          295 a          296 c          309 g          318 t
ORIGIN      
        1 ttctattctg gcgagttcta tttctggtgg gctttttgag ctttcttacg gcgcggttat
       61 aatggccgcg cttcgcaaat gggggcgaca ggcttcgaca ggaacctgaa cgatcgtcgc
      121 gatgcatgcc gggctacctt atgcagctcg ttaaaaagcg tagggaaaca caattgccaa
      181 cactgaattg gctctcgctg cctaattaag caccgagcgt ctcaccgcaa gttgctcata
      241 cgcgcggagg gagatgtcac ttagttgagc tggcttaccg tttcggtccg tggcggtggg
      301 taagataaag tcggactagc tcatgccgcg gtcttgtcgc ttcacttact cggcaccgag
      361 cgaaatttct cccgagcaat cgggagagaa agagaaacga ctaagcatgt agattccttc
      421 ggggttggtt tttggaaccg agttcaattc tcggcgcctc caccaaaaaa gatctcagat
      481 tgattggcat tcttcctcat gaattggttg aagtatggcg accacaactc actcagtaac
      541 tgctgatgaa ctcatgcggt tgtcagatga tggccaccgt tttgaactag ttaaaggaga
      601 actcctcacg atgtctccaa caagcggtaa acatggcgta gtcgccatgc gactctctcg
      661 tttccttgca aactatatcg aagattctga cctcggatta acctttgctg ctgagaccgg
      721 ttttaggcta gagcatgatc cagatacagt actcgccccc gactttgctt ttgtttccag
      781 ggaccgtata tctactctgc ctgacgacgg atacgtgaga ctggcgccgg atttggtcgt
      841 tgaagtcatt tcaccctcac aaagcgacaa ggagatgaga ctgaaagccg ggctgtggat
      901 cagtttgggt gtgaagcaag tgtggttagt tcaaccaaaa aaacgaaccg tcgaattgtt
      961 tgtgaagact gacgaacatg ttcttcttag agaaaaggat gagctgactg gcggtgaact
     1021 catccctggt tttcgaattc gcgtatcgga aatcttctcc tagtacctcc tttggatcga
     1081 aaccttccca tcggcatatt cgatagtggc gttggcggac tcaccgttta cagagcctta
     1141 cacgaacgtt taccaaatga acgtttcgtc tacttaggcg acaccgccag agttccgtac
     1201 ggcacaaagt cactagca
//
LOCUS       DATCGC010001743         1100 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_291149, whole genome shotgun sequence.
ACCESSION   DATCGC010001743 DATCGC010000000
VERSION     DATCGC010001743.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1100)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1100)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1100
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291149"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(82..600)
                     /locus_tag="VIJ87_16675"
     CDS             complement(82..600)
                     /locus_tag="VIJ87_16675"
                     /inference="COORDINATES: protein motif:HMM:NF024637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HEY5446067.1"
                     /translation="MYCPNCASENSEEQRFCRTCGLHLQTISQVVSHQIRSIQKTDSP
                     IKAIEPKNIWQNPLLYGFFLVLMGLLVVTIGKKIIGEQLIADIGTLISLSGIAVFILK
                     GVFLVQRSQRSGSTEPTPDFTRADTTTELPHLIEAKEPPSVTEFTTRNFDPVYVERHN
                     AESSTSHRNSRS"
     gene            complement(745..>1100)
                     /locus_tag="VIJ87_16680"
     CDS             complement(745..>1100)
                     /locus_tag="VIJ87_16680"
                     /inference="COORDINATES: protein motif:HMM:NF016027.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY5446068.1"
                     /translation="DDNVLIKPIGYTQEMDEYMTAADIVLGKPGGLTTSEGLSKGLAF
                     AIVDPIPGQEERNSDHLLEAGVAIRSNNLPTLAYKLDRLLADGDRLAKMQSISKKLGR
                     PNAARDIVRRVTEIS"
BASE COUNT          259 a          271 c          279 g          291 t
ORIGIN      
        1 atgatgttgt cggccacgcg gcgcacggcc tttacgacag tgttgtccgc actgcattcc
       61 tgagctgtgg ccacggtcca actaagaacg agagttgcga tgagaggtag aactttctgc
      121 attatgtcgc tcaacgtaaa cggggtcgaa gtttctagtc gtgaactccg tcacacttgg
      181 tggctctttc gcttcgatca aatgtggaag ttcggtcgtt gtatccgccc tggtgaaatc
      241 tggagtcggt tcagtgcttc ccgatcgttg cgatcgttgt accaggaata ctcctttgag
      301 tatgaagaca gcgataccag acagggatat tagtgtgccg atgtccgcga tcaactgttc
      361 accaataatc tttttgccga ttgtgaccac caaaaggccc atcagaacta agaagaatcc
      421 atagagcagc gggttctgcc agatgttttt gggctcgata gccttgattg gggaatcagt
      481 tttctgaatc gatctaattt ggtgtgaaac tacttgcgag atggtttgca gatgaaggcc
      541 gcaggtacga cagaatctct gttcttccga gttttcgctg gcacagtttg gacaatacat
      601 cgactatgac ctccgagacg tttacgatac ccgatgcctc taggttcaga ctagaggttg
      661 acctaccagg atccaccatt cccaacgaat gtgtcaggaa tagcggcacc cagacgaatc
      721 gagaatcgcg ggcactcata aacgctaact aatctcagtc acgcggcgta cgatgtctcg
      781 cgctgcattt ggtctcccca gcttttttga aatggactgc attttcgcga ggcggtcacc
      841 gtcagcaaga agccgatcaa gtttataagc gagggttggc aaattattag aacggattgc
      901 cacacctgct tcgagcaaat gatcagaatt ccgttcttcc tgacctggga tcgggtcgac
      961 aattgcgaat gctagaccct tcgacagtcc ctccgaggtt gtcagacctc cgggttttcc
     1021 cagaacaatg tccgctgcag tcatgtactc atccatctct tgggtgtatc cgatgggttt
     1081 aatcagcaca ttgtcgtcag
//
LOCUS       DATCGC010001744         2023 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_490859, whole genome shotgun sequence.
ACCESSION   DATCGC010001744 DATCGC010000000
VERSION     DATCGC010001744.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2023
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_490859"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            19..>2023
                     /locus_tag="VIJ87_16685"
     CDS             19..>2023
                     /locus_tag="VIJ87_16685"
                     /inference="COORDINATES: protein motif:HMM:NF013239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 31 protein"
                     /protein_id="HEY5446069.1"
                     /translation="MLKGLLSAGAAAALSTPDTFAKLRVQDPNLQIGGQPVELTVSAV
                     SPRTLRIKFERTDHERDTTAFSNDSLVQPDWPGPKKQFRRPEELKRIQLHEFSISFDA
                     EALRLSVEEKGQKIQQLTIDQKTGGLSFKIGDAPLFGFGEGGPQFDRRGIVDQMRSGQ
                     GGYRLRTHGGRVPIQWLISTSGWALYLHHPEGTFDLTTGEGKFVPKPNTRLPLDVFLV
                     ISPDPLQIMGEFARLTGLPEMPPLWSLGYLQSHRTLRGPDEIKAIARTFREKKLPCDA
                     LIYLGTDFTPSGWNTHNGEFNWHPANFPDPKAMVDELHRLHFKVVLHTVLEGKRLTGT
                     VSDPCTAAPLPSGRTPDNHWPDDRQVSCYWPVHKQLYDVGIDGWWPDQGDGLDAPSRL
                     ARNRMYFEGSQQLRPNERPFALHRNGHAGMQRFAAFLWSGDVYSTWETLKNHVPIAIN
                     TGLSGIPYWGTDIGGFVPTKEYTGELHVRWFQFGAFCPLFRSHGRTWHLRLPWGWNTG
                     ELGISEVSNYTGGAADPDAGELHNADIEPICRKYLELRYQLMPYLYSVVREGCQTGLP
                     IMRALWLHHPEELEAVLRGDEFLWGRDILVAPVTEKAATTRELYLPRGTWYDFWTNEK
                     VAGGRVINRKVDLATMPLYVRSGAVIPFGPVKQYTAEKAEEPIT"
BASE COUNT          468 a          532 c          552 g          471 t
ORIGIN      
        1 cgactttcac gtaggaaagt gctgaaaggt ttgttgtccg cgggtgctgc tgcggcactg
       61 tcgacaccgg atacatttgc gaagctacgc gtccaagacc ccaaccttca aataggtggt
      121 cagccggttg agttgaccgt gagcgccgtt agtccgcgca cgcttagaat taagtttgag
      181 cgaaccgacc acgagcgtga caccactgcc ttctcaaacg actcactggt tcaacctgac
      241 tggcccggtc cgaaaaaaca gtttcggcgt cccgaagagt tgaagcgcat tcaactgcac
      301 gagttttcaa tttcatttga cgcagaggct cttcgtctca gtgtggaaga gaaagggcaa
      361 aagatccagc agttgaccat cgatcaaaag acgggaggtc tgtcgttcaa gatcggagat
      421 gcgcctctat tcggatttgg cgagggtggg ccacagttcg atcgtcgtgg aattgtcgat
      481 cagatgcgca gcggccaggg aggctatcgt ctaagaactc atggtgggcg cgtaccaatt
      541 caatggttga tcagcaccag tggatgggcg ctgtatcttc atcatcccga aggcacattt
      601 gatttgacga cgggggaagg gaagtttgtt cccaaaccaa ataccaggct tccgctcgac
      661 gtcttcctcg ttatttcacc agatccctta cagataatgg gtgagtttgc ccgtctcacg
      721 ggacttcccg agatgccacc tttatggtca ctggggtatt tgcagtctca tcgtacgctt
      781 cgcgggcccg acgaaattaa ggcaatcgct cgaacctttc gcgaaaagaa acttccttgc
      841 gatgctctga tctacttagg caccgacttc actccgtcag gttggaacac acacaacgga
      901 gaattcaact ggcacccggc aaattttcct gatccaaagg caatggttga tgaactccat
      961 cgcctgcact tcaaggtggt gttgcacacc gtgctcgaag gaaaacggct aaccggcaca
     1021 gtcagcgatc cgtgcactgc cgcgcctcta ccgagtggaa ggacaccgga taatcattgg
     1081 ccagatgatc gtcaggtcag ttgttactgg ccggttcata aacaacttta cgatgttggt
     1141 atcgacggtt ggtggcccga tcaaggcgac ggtctcgacg ctccttcacg tctcgctcgc
     1201 aaccgcatgt atttcgaagg ttcacaacag ctgcgcccca atgagcgtcc gttcgcgctt
     1261 catcgaaatg gacatgccgg gatgcaacgc ttcgctgcgt ttctttggtc cggtgacgtc
     1321 tattcaacct gggagacgct gaagaaccat gtgccaatcg caatcaacac gggcttgagt
     1381 ggcatccctt attggggaac tgacattggc ggctttgtgc cgacgaaaga atacacgggc
     1441 gagttacacg ttcgttggtt tcagtttggc gctttctgtc cgctgtttcg atcacacggt
     1501 cgaacgtggc accttcgtct accgtggggt tggaacactg gtgaactggg aatcagtgaa
     1561 gtttcaaatt acacaggcgg cgctgcagat ccggacgcgg gcgaacttca caacgcggat
     1621 atcgaaccga tttgtcgcaa gtatcttgaa ctgcgctatc aattgatgcc gtatctctac
     1681 agcgtggtgc gcgaaggatg tcaaacagga ctgccgataa tgcgagcgct gtggttgcat
     1741 cacccagaag aactcgaagc ggttctacga ggtgacgaat ttctttgggg gcgcgacatc
     1801 ctcgtcgctc cagtaactga gaaggcggca acaactcgtg aactctactt gccacgcggc
     1861 acctggtatg acttttggac taacgagaag gtcgcaggcg gccgcgtgat caatcgcaag
     1921 gttgatttgg caactatgcc actctacgtt cgatccggcg ccgtcattcc ttttggtccg
     1981 gtcaagcaat acacggcaga gaaggcagag gagcccatca cct
//
LOCUS       DATCGC010001745         1202 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_192843, whole genome shotgun sequence.
ACCESSION   DATCGC010001745 DATCGC010000000
VERSION     DATCGC010001745.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1202)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1202)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1202
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192843"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1202)
                     /locus_tag="VIJ87_16690"
     CDS             complement(<1..>1202)
                     /locus_tag="VIJ87_16690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446070.1"
                     /translation="GPEGIHRVSAQGGATSLVTKVSPQEEAHRWPYFLPDGRHFVFLG
                     DASTTEEHHIKLGSLDSNESQNLFGAVSRIVYAPPGYLLYVNQGSLVALPFDATSLKV
                     TGEPTSVAERIKDVGENHHFDFSVSEEGTLAYQSGTVNSQLAWFDRAGQKQSAVGDVV
                     GRDSLALSPDGRIAATGLLDADGRQSDIWLVDLTRNTTSRLTFDPAGDGTPVWSPDGK
                     RIVFGSNRASGGRDVDLWEQAASGVGDEQVLLKSASAKFPTSWSRDGQVILFENWEQQ
                     LKGAIWVMSTADRQARPLLQSKSFNQLQGQFSPDGHFIAYASDESGSMEIFLQRYPTT
                     SEKWQISSGGGITPLWRADGHEIFYTSLDKMMSVEVKLGSKVETGLPRELFRSAISHH
                     GLSYEYAV"
BASE COUNT          294 a          325 c          295 g          288 t
ORIGIN      
        1 ctaacggcat actcataaga gagtccatga tggctaatcg cggaacgaaa gagttcgcgc
       61 ggaagaccgg tctcgacttt gctgccgagt ttgacctcta ctgacatcat tttgtctaaa
      121 gaggtgtaaa agatctcatg gccgtctgca cgccacaacg gtgtaatgcc gccacctgaa
      181 gagatttgcc acttctcgga tgttgttggg taacgctgta ggaagatctc catacttccg
      241 gattcgtcgg aggcgtatgc gataaagtga ccgtctggcg aaaactgtcc ctgcagctga
      301 ttaaaagatt ttgactgcag caacggtctt gcttgcctat ctgccgtcga catcacccaa
      361 atcgcgcctt tcaattgctg ctcccagttt tcaaacagaa ttacctgacc atcgcgcgac
      421 caactggttg ggaattttgc cgatgcactt ttcaacaaca cctgttcgtc acctactcca
      481 cttgcagcct gctcccaaag atcaacatcg cgtccgcctg aagcgcggtt cgaaccgaac
      541 actattcgtt tgccgtcagg cgaccataca ggtgtgccat cgcctgcggg atcaaacgta
      601 agtcgtgagg tcgtattccg agtgagatcg actagccata tatcgctttg gcgtccgtca
      661 gcgtcgagca atcctgtcgc cgcaattcgt ccgtcgggtg ataacgcaag agaatcccgg
      721 ccaacgacat caccgacagc actctgcttt tggcccgcgc gatcaaacca ggccagttgc
      781 gaattaactg tccccgactg ataagccagt gttccttctt cagaaacgga aaaatcaaag
      841 tggtgatttt ctccgacgtc tttgatccgc tcggcgactg acgttggctc accggtaact
      901 ttcagtgaag ttgcgtcaaa cggcaatgct actaaggagc cctgatttac atacaacagg
      961 taacctggtg gggcataaac aatccgcgag accgcaccaa agagattctg agactcgttt
     1021 gaatcaagtg aacctaactt tatgtggtgt tcttcggtgg tactcgcatc acccagaaaa
     1081 acaaagtggc gaccatcggg tagaaaataa ggccaacgat gcgcttcttc ctggggcgag
     1141 acttttgtta cgagtgaagt tgcaccgccc tgggcggaaa cccgatgtat gccttcgggt
     1201 cc
//
LOCUS       DATCGC010001746         1014 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_156821, whole genome shotgun sequence.
ACCESSION   DATCGC010001746 DATCGC010000000
VERSION     DATCGC010001746.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1014)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1014)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1014
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156821"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..376)
                     /locus_tag="VIJ87_16695"
     CDS             complement(<1..376)
                     /locus_tag="VIJ87_16695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446071.1"
                     /translation="MSGSLCNHTLPMKKNLAGSFVVALALIPVALLGQGLAPTPRNSD
                     QAELSKAEEWVLSQGAEESIAPELAAILGVGSDRLPVKLKPYRTSDGINYAFAVSTNP
                     KQQCIVLSALKTIEDKMKIYSVG"
     gene            complement(507..>1014)
                     /locus_tag="VIJ87_16700"
     CDS             complement(507..>1014)
                     /locus_tag="VIJ87_16700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446072.1"
                     /translation="DRVLANYGSESAKTRELLRGSVGSAISRMWPDKKSSQTAQLDPS
                     VSSGEAFFNSIQNLSPQNDVQRSLKSQAVQIATDLGQMRWLLFEQTETSISLPMLIIL
                     ISWLAIIFMSAVLFAPPNATVIVAVMLAALSVAGAIFLILELDMPFDGVIQISPVPMR
                     NALIHLGH"
BASE COUNT          225 a          264 c          276 g          249 t
ORIGIN      
        1 tgcctacgga ataaattttc atcttgtctt ctattgtttt cagcgcagaa agcacgatac
       61 actgttgctt tgggttggta ctgacagcaa atgcataatt aataccgtcc gaggtgcgat
      121 acggttttag tttcactgga agacgatcac taccaacgcc cagtatggcc gccagctccg
      181 gggctatcga ttcttcagcg ccttgagaca gtacccattc ttccgctttg gaaagttcgg
      241 cctggtcgga attacgaggc gttggagcaa gaccctgacc tagcaaggcg acgggaatga
      301 gcgccagggc cacaacgaag gacccggcta ggttcttctt cataggcaag gtgtggttgc
      361 aaagtgatcc gctcatgact cgctcactcg gttgttccga tagctttctt ccatcaggac
      421 ttactccttt ggctactgtc cattgcttca ttctggggac ccgttttact agccgcttca
      481 atctcatttc actgtccatt ttcatcttag tgcccgagat gaattaaggc gttgcgcatg
      541 gggacgggag agatctggat cactccgtcg aagggcatgt ccagttccag gatcaggaag
      601 atcgctcctg ctactgagag tgccgccagc ataaccgcaa cgatgaccgt ggcattcggc
      661 ggcgcgaaca ggactgcact catgaatatg atcgccaacc aggagatgag aataattagc
      721 atgggaaggg atatggacgt ttccgtctgc tcgaacagca gccagcgcat ttgaccgaga
      781 tcggtagcga tctgcacggc ttgagacttc agagagcgct gcacgtcgtt ctgtggcgat
      841 aggttctgga ttgagttaaa gaacgcctcg ccggaagata cgctcggatc tagttgcgca
      901 gtttgagatg acttcttgtc cggccacatg cggctgatcg cactcccgac tgagccacgg
      961 aggagctcac gggtcttcgc gctctcagag ccgtaattgg ccagcacccg gtcg
//
LOCUS       DATCGC010001747         1035 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_257267, whole genome shotgun sequence.
ACCESSION   DATCGC010001747 DATCGC010000000
VERSION     DATCGC010001747.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1035
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257267"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..317
                     /locus_tag="VIJ87_16705"
     CDS             <1..317
                     /locus_tag="VIJ87_16705"
                     /inference="COORDINATES: protein motif:HMM:NF020157.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1761 domain-containing protein"
                     /protein_id="HEY5446073.1"
                     /translation="EMQNHNPAKELMIAFISALVLVYILAHFVQYTKARTTLDGIQTA
                     FWLWLGFIATTQLATVVFEQRKLGLYLINVGYQFVACSLAGVILTLWKPRDAKETITQ
                     AV"
     gene            complement(397..792)
                     /locus_tag="VIJ87_16710"
     CDS             complement(397..792)
                     /locus_tag="VIJ87_16710"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5446074.1"
                     /translation="MPRLLVVDDEESICFSMSEYFSLHGYRVDTARELEEAEKLIEAT
                     EYKAVIQDLRLTTTRNPDGLDIIKMIRSQNPQTRIIVLTAYGSSEMEDEARRCGADAF
                     LRKPKPLSQVAQVVQGLLEAPPKQTIRPA"
BASE COUNT          268 a          256 c          237 g          274 t
ORIGIN      
        1 aggaaatgca gaatcacaat ccagcgaaag aactgatgat cgctttcatt tcagcgctgg
       61 tgctcgtgta catcctcgct cattttgttc agtacactaa agcgcgaacg acccttgatg
      121 gaatccaaac tgccttttgg ctatggctcg gtttcatagc taccacacaa ctcgcgaccg
      181 ttgtctttga acaacgaaag ctaggtctat atttaattaa tgtaggctat cagtttgtcg
      241 cttgttccct ggccggggta attctgactt tgtggaaacc acgagacgca aaggaaacga
      301 ttactcaagc ggtttaagca tctgcggcac caaaaagaaa aagcgaagcc ctctaaacgc
      361 gagcttcgca tgactggaaa acaatggctg aagagtttat gccggcctga ttgtttgttt
      421 tggtggagct tccagcagac cctgtacaac ttgcgctacc tgagacagag gtttgggctt
      481 gcgaagaaaa gcatcagctc cgcaacgcct tgcttcgtcc tccatttcgc ttgagccata
      541 ggccgttaag acaatgatcc gcgtttgtgg attctgactt ctgatcattt tgatgatgtc
      601 cagaccgtca ggatttcgcg tggtcgtaag tcttagatct tgaatgacgg ccttgtactc
      661 agtcgcttca ataagttttt cggcttcttc caattcgcgc gctgtatcca cacggtaacc
      721 gtgcaaggaa aaatactcgc tcatcgagaa gcaaatcgat tcttcgtcat caacgacgag
      781 cagacggggc attaatgcct cctttgaagt actaacatct cgaccattcc acatttgcct
      841 cagttttccc gagacatttt tcaatgttcc aaagcgactt tgcttcacgg cacacacacc
      901 ggagctaggg cagctggaat tagggtgagc tgcttttgca atttgcgatc aagttaaaag
      961 aacgtcagga gacttccatc aacgcgccgc gttctagatc aataagagcc gagatttaac
     1021 gacaccctca cggag
//
LOCUS       DATCGC010001748         1175 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_192977, whole genome shotgun sequence.
ACCESSION   DATCGC010001748 DATCGC010000000
VERSION     DATCGC010001748.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1175)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1175)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1175
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192977"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..344)
                     /locus_tag="VIJ87_16715"
     CDS             complement(<1..344)
                     /locus_tag="VIJ87_16715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446075.1"
                     /translation="MAAGSTDNFQKELVDLFVEEAHEWLQNLHVALDELEQGPAPDRY
                     AELIDTMLVGVTNLGESAATINLRDIMDACLAAFPLIEILKDPRKASSVQAFFAICRQ
                     LGQIQTELTRAT"
     gene            complement(356..>1175)
                     /locus_tag="VIJ87_16720"
     CDS             complement(356..>1175)
                     /locus_tag="VIJ87_16720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446076.1"
                     /translation="SVELFQRSRVSDEQTDAYRQAIPQLSPLEGEPRLEGDQATVGTQ
                     RVVPLEGPLARVKELESIAALEREQATELKKKLAESERVSARIQELESLIQIERERTI
                     EAKNQASAAEALGRRVWELEGALQKERESAVQQATRLADLQMNVNRVPELEAALYAER
                     QTGLQLAQHMTELEGEVARTQELSQALAAEQERNKDLGVRLTEAQLASQKVQEIEALF
                     QAERERNSLLARRVFEAEQASGLATKRFEEVAAKLGEIAGWASQLRSGKRQPLS"
BASE COUNT          233 a          369 c          282 g          291 t
ORIGIN      
        1 cttgttgcgc gggttaattc agtctggatc tgccccagct gcctacagat tgcgaagaac
       61 gcctgaaccg aagacgcctt acggggatct ttgagaattt ctatcaaagg aaacgctgca
      121 agacaggcat ccataatgtc gcgcagatta atcgtcgcgg cagactcacc gaggttcgtc
      181 actccaacca acatcgtgtc gatcagttct gcataccggt ccggcgccgg cccctgctcg
      241 agctcgtcaa gcgcaacatg aaggttctgg agccattcat gggcttcctc aacaaataga
      301 tcgaccagtt ctttctgaaa attgtccgtc gagccggcag ccatgcatca gtccttcatg
      361 acaggggctg tctcttccca ctcctcagct gagaagccca tcctgcaatc tcgccaagct
      421 tggccgccac ctcttcaaat cgcttagtgg caagcccgga cgcttgttca gcttcaaata
      481 cgcgcctcgc caaaaggcta ttgcgttccc gttctgcctg aaatagggct tcaatctcct
      541 ggactttctg cgaggcaagc tgggcctcag tgagacgaac gccaaggtcc ttatttcttt
      601 cctgttcagc agcgagagct tgtgacaatt cctgagtcct ggcaacctcg ccttccagct
      661 cagtcatgtg ctgcgccaat tgcaaacctg tctgccgctc ggcatacagc gcagcctcca
      721 gttcaggaac acgattcaca ttcatctgca gatccgccag acgcgtcgcc tgttgcactg
      781 cactttcgcg ttctttctga agggctccct ccagttccca tacccgcctg cccagagctt
      841 ccgctgcgga tgcttgattc ttggcctcga tcgtccgctc tcgctcaatc tggatgaggg
      901 attcaagttc ttgtatccgc gcggataccc tctcggattc cgcaagtttc tttttgagtt
      961 ccgtagcctg ctcccgctcc aaggccgcta tcgactcaag ttccttgaca cgagctaacg
     1021 gtccttcgag tggtacgact cgctgagtac ccacggtggc ttgatctcct tcaagccgtg
     1081 gttccccctc caatggactc agctgcggga tggcctgtcg ataggcatcc gtctgctcat
     1141 cgctcacacg tgaccgttga aagagttcga cggat
//
LOCUS       DATCGC010001749         1115 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_257329, whole genome shotgun sequence.
ACCESSION   DATCGC010001749 DATCGC010000000
VERSION     DATCGC010001749.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1115
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257329"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..557
                     /locus_tag="VIJ87_16725"
     rRNA            <1..557
                     /locus_tag="VIJ87_16725"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            854..930
                     /locus_tag="VIJ87_16730"
     tRNA            854..930
                     /locus_tag="VIJ87_16730"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:888..890,aa:Ile,seq:gat)
     gene            982..1058
                     /locus_tag="VIJ87_16735"
     tRNA            982..1058
                     /locus_tag="VIJ87_16735"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1016..1018,aa:Met,seq:cat)
BASE COUNT          274 a          286 c          316 g          239 t
ORIGIN      
        1 cgaagaacct tacctggcct tgacatgcag gtggtaggga cctgaaaggg aaccgaccct
       61 cgggagcctg cacaggtgct gcatggctgt cgtcagctcg tgccgtgagg tgttgggtta
      121 agtcccgcaa cgagcgcaac ccctggcgca tgtttcacgt gtcatgcgcg acagccggcg
      181 caagccggag gaaggtgggg atgacgtcaa gtcagcatgg ctcttacgcc tggggcttca
      241 cacatgctac aatgggcgca acaaagggca gcaagaccgc gaggtggagc taatcccaaa
      301 aatacgtcct cagttcagat tgcagtctgc aactcgactg catgaaggcg gaatcgctag
      361 taaacgcagg tcagctatac tgcgttgaat acgttcccgg gtcttgtaca caccgcccgt
      421 cacatcacga aagtgggctg tgctagaagc ggctgagcta accctttggg gggcaggtcg
      481 ccacggcatg gtccatgatt ggggtgaagt cgtaacaagg tagctgtagg agaacctgtg
      541 gctggatcac ctcctttcta aaggatattg agacgctcaa caaagcaatc taacaaggtt
      601 gcgagagtgg tcaaagatcc aaatgatccc gactttcaaa acttgttcgg cacgcctatc
      661 tagtcttcag atatcgatcc aaagggtctg agtatcttag ttctttcata attcagaatc
      721 taagtagatc gcaggcaatc tttaatagcc accgaagcta cacggccctc cggcgcgtcc
      781 accgttaaca acggaccgca ctgaagagaa gtgtggctct tttttgcggc aaaaatggcc
      841 gctaaagaga catgggcctg tagctcagtt ggttagagcg cacgcctgat aagcgtgagg
      901 tcggtagttc gaatctaccc aggcccacca ggcttattgg gatctagaat ggttaaccct
      961 cagatctcaa gcgagagatg acgcggggtg gagcagtccg gtagctcgtt gggctcataa
     1021 cccaaaggtc gcgggttcaa atcccgcccc cgcaaccatt ctagatctca atttgagatc
     1081 tcaatcgctt gtcgggggcg tagctcagct ggcag
//
LOCUS       DATCGC010001750         1052 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_327085, whole genome shotgun sequence.
ACCESSION   DATCGC010001750 DATCGC010000000
VERSION     DATCGC010001750.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1052
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_327085"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(121..582)
                     /gene="rnk"
                     /locus_tag="VIJ87_16740"
     CDS             complement(121..582)
                     /gene="rnk"
                     /locus_tag="VIJ87_16740"
                     /inference="COORDINATES: protein motif:HMM:NF004396.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0070063 - RNA polymerase binding [Evidence
                     IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside diphosphate kinase regulator"
                     /protein_id="HEY5446077.1"
                     /translation="MMMTTQVRQFRQDNDGIKNPIYVTSQDKQRLEDLLIEVEASDPR
                     KHGNLKALTEELHRAVIVDPKDVFSDVITMNSRAEMRDFETGETVAFTLVFPSEANID
                     EEKISVLAPIGAGMLGYCVGDEFEWKVPDGLRRMKVTNVEYQPEAAGDFDR"
     gene            689..>1052
                     /locus_tag="VIJ87_16745"
     CDS             689..>1052
                     /locus_tag="VIJ87_16745"
                     /inference="COORDINATES: protein motif:HMM:NF012981.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylglycerol kinase family protein"
                     /protein_id="HEY5446078.1"
                     /translation="MIVILNRGAGRHQDETQAQIKKFFQKRGIAARLFIARHGGEIAQ
                     FAEEAASSDAEVIVAAGGDGTIDGIATVLADTGKILGVVPLGTFNLFANRLNIPLDLE
                     AALHTAVNGSVAEINVSEV"
BASE COUNT          253 a          269 c          261 g          269 t
ORIGIN      
        1 caatgtttgc tgctgatcgt gatacctgtg tttcccgcct cgttggaaga tcctccattc
       61 aaggttcgca aagatccgtg attcattccc tttgttctct gattcatcat ggcgcgcgac
      121 tcagcgatca aaatctccgg ccgcttcggg ctgatactca acgttcgtca ccttcattcg
      181 gcgtaatcca tcggggacct tccactcgaa ctcatcaccg acacaatacc cgagcattcc
      241 tgctccgatc ggtgcgagca cagaaatctt ttcttcgtca atgtttgctt cagacgggaa
      301 aacaagagtg aaggcaacag tctcgccagt ctcaaaatca cgcatctccg cgcgcgagtt
      361 catcgtgatc acgtcgctaa acacatcttt tggatcaacg atgacagctc ggtgcagctc
      421 ttcggtcaga gctttcagat tcccatgctt gcgcggatcg gaagcctcta cttcgataag
      481 caaatcttcg aggcgttgct tgtcctggct agtgacataa atgggattct taatcccatc
      541 attatcttgg cggaactgtc taacttgcgt ggtcatcatc atgggaatta aacatcctcg
      601 cgatcgagtg actaagactt atgtacgatc ataaggatag tcttttgtta tcgggtcgcg
      661 atgatccttt atagaggact caacgaagat gattgtaatt ctaaatcgcg gtgccggccg
      721 ccatcaggat gagactcaag cgcaaattaa gaagttcttt cagaagcggg gcattgctgc
      781 acgtctgttt atagcgaggc atggcgggga aatagcgcaa tttgcagagg aagcagctag
      841 cagcgacgcc gaagtcatcg tcgccgcggg cggcgacggc acaattgatg gaattgccac
      901 ggtattggct gataccggga agattctcgg agtagtgcct ctcggaacat ttaatctgtt
      961 cgccaaccgg ctcaacatcc cgctcgatct tgaagcagcc ctgcacacgg cagtgaatgg
     1021 aagcgtcgct gagattaatg ttagcgaggt aa
//
LOCUS       DATCGC010001751         1687 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_193052, whole genome shotgun sequence.
ACCESSION   DATCGC010001751 DATCGC010000000
VERSION     DATCGC010001751.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1687)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1687)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1687
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193052"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            37..>1687
                     /locus_tag="VIJ87_16750"
     CDS             37..>1687
                     /locus_tag="VIJ87_16750"
                     /inference="COORDINATES: protein motif:HMM:NF013123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DPP IV N-terminal domain-containing protein"
                     /protein_id="HEY5446079.1"
                     /translation="MLTVEDIFDATKRVNFNGTTPSIRWLKDGTHYLLTNEASRRDVP
                     RLQKVDAATGEAVPFFDSAKMQAAFAALPGVSTQDARQLSNRGSYQMNPNESAVLINW
                     ANDLFYYEFGSERAVRLTSSAEEEVGEGFSPDGRMVSFVRENNLYVEDLGMQRRERAL
                     TRDGSAKILNGRLDWVYQEEIYGRGNFGAYWWSPDSASIAYLRFDERPVPEFTVVDHI
                     PYDQTLEVTSYPKAGDPNPIVKLGIVNAIGGETRWIDTFKYEPTDFLISRVTWTPDSK
                     KVAFQAQNREQTFLDLNFADARDGKSSSVIHETTKAWVSAIDDPTWLDDGSFLWQSER
                     AGWRHLYHYAADGKLIKQVTDGKWEFRSLEGVDEKNGLVYFSGTEHSQIAAQGYSIKL
                     DGTGLTRLTTTEGTHRIDVSPANNFFLDVWSDINTPPQVRLFDGTGKLVRVLAENKVD
                     ALKNYKLGTAELMQVKTRDGFVMDAMMIKPPDFDPKKKYPVMTFTYSGPHAPQVRNAW
                     GSTTYLWHQLLAQKGYIMWVCDNRTASGKGAESTWPVYKNFG"
BASE COUNT          432 a          429 c          443 g          383 t
ORIGIN      
        1 ctgatctgcg ccgttccaac gctcgcacaa aacaaaatgc taaccgtcga agacatcttc
       61 gatgcgacaa aacgcgtcaa cttcaacggg accacaccaa gcattcgttg gctcaaagat
      121 ggcactcact acttgctgac aaatgaagcc tcgcgccgcg acgtgccccg tttgcagaaa
      181 gtcgatgcag ccacgggcga agctgttcca ttttttgatt cggcaaagat gcaagctgcg
      241 tttgctgcat tacccggggt tagtacgcaa gacgctcgac agctttctaa tcgtggttcg
      301 tatcaaatga acccgaacga aagtgcggta ctgatcaact gggcaaatga tctgttctat
      361 tacgaattcg gcagtgaacg tgcggtccgt ttgaccagct ctgctgaaga ggaagtaggc
      421 gagggattca gtcctgacgg tcgcatggtc agcttcgttc gcgagaacaa cctgtacgtt
      481 gaagacctgg ggatgcaacg tcgcgagcgc gcccttacac gcgacggcag cgcgaagatt
      541 ctcaacggta gactcgattg ggtgtatcag gaggaaattt atgggcgcgg aaatttcggt
      601 gcctactggt ggagtcccga ttcagcgagc attgcctacc ttcggttcga cgagcgacca
      661 gtgcctgaat tcacagttgt cgatcacatt ccttacgacc aaacactcga agtcacatcc
      721 tatccaaagg ctggtgatcc aaacccgatc gtgaagcttg gcatcgtgaa tgcgattgga
      781 ggcgaaactc gttggatcga cacgttcaag tatgagccaa ctgatttcct aatctcccga
      841 gttacctgga ctcccgatag caagaaggtc gcctttcaag cacagaatcg cgaacagaca
      901 ttcctcgatc tcaactttgc tgatgcacgc gatggcaaga gctcaagtgt cattcatgaa
      961 acgaccaagg cgtgggtctc agcaatcgat gatcctacct ggcttgatga tggctctttc
     1021 ctttggcaga gcgaacgagc cggctggcgt catctttatc actatgctgc tgatggcaaa
     1081 ctaatcaagc aagttacgga tggtaagtgg gagtttcgtt cactcgaagg cgtcgacgag
     1141 aagaatggtt tggtctactt cagtggaaca gaacacagtc agatcgccgc acagggttac
     1201 agcatcaagc ttgatggaac agggctaact cgccttacaa ccaccgaagg aacacatcgt
     1261 atcgacgtta gtcctgccaa caacttcttt ctcgacgtct ggagcgacat caatactcca
     1321 ccgcaggttc gtttgttcga tggcactgga aaacttgtcc gcgtcctggc agagaacaaa
     1381 gttgacgcgc taaagaatta caagttggga actgcagagc tgatgcaggt gaagacgcgc
     1441 gacggttttg taatggacgc aatgatgatc aaaccacccg attttgatcc taaaaagaag
     1501 tatccagtga tgacgtttac ctacagcggt ccgcatgcgc cgcaggtgcg caacgcttgg
     1561 ggctccacta cttacctgtg gcatcaactg ctggctcaga agggttacat catgtgggtc
     1621 tgtgacaacc gcactgcgag tggcaaaggt gcggaatcga catggcccgt ctataagaac
     1681 tttggtg
//
LOCUS       DATCGC010001752         1167 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_156885, whole genome shotgun sequence.
ACCESSION   DATCGC010001752 DATCGC010000000
VERSION     DATCGC010001752.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1167)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1167)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1167
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156885"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            195..>1167
                     /locus_tag="VIJ87_16755"
     CDS             195..>1167
                     /locus_tag="VIJ87_16755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446080.1"
                     /translation="MALWKNYMHRRERWYHQRDNNRLVRPFDWGLEHILDHVNGADPR
                     EVLRSHTSRVMQSSDDFYSLPAISDYKLEADQLTWTSAIETPSPENNLARARFFPAKT
                     KDGKPSRKAVVVLPQWNAQPESHVEACRIFNMIGMSALRLTLPYHQQRKPADIERADH
                     LVSTNVGRSIQSMRQAVLDTKAAVRWLKNEGYEQVGILGTSVGSCISFLAFAHDPDLN
                     AGAFNHVSGYVADVVWHGLSTAHVREGFSNHISLEELRDYWSPISPLPFMPRVAAMGK
                     RPIRFIIAKYDLTFPINLSHEAIAEAQRNNLPLDIVWLPCGHYTTGEM"
BASE COUNT          277 a          320 c          302 g          268 t
ORIGIN      
        1 gtcctcgcct gcactcgtcg ccactaggat ccgctaaagc aacctgtgca ggcgaggacg
       61 cctgcggtcc cagaagagcg cgcccgttga aatgaaagga gttactaaag ggtgacgttg
      121 attgcttttt actttggggc gttcctgccg taggatttgc gcttcgtttt tgaccgatgt
      181 taggaattag ttagatggct ttgtggaaaa actacatgca ccggcgggaa cgctggtatc
      241 accaaagaga caataaccgg cttgttcgtc cgtttgattg ggggctggag catatcctcg
      301 atcacgtcaa tggcgccgat cctcgtgaag ttttgcgtag ccacacttca cgagtgatgc
      361 agtcaagcga cgatttttac tcgttgccgg caatcagtga ctacaagctc gaggccgatc
      421 aactcacctg gacgagcgcg attgagacac catcgcccga aaacaacctc gctcgtgcca
      481 gattttttcc ggcgaagacg aaagacggca aaccatctcg caaagctgtc gttgttttgc
      541 cgcagtggaa cgcacaacca gaaagccacg tcgaagcttg ccgcatcttc aacatgatcg
      601 gcatgtctgc cttgcgacta acgcttccct atcaccaaca acggaagcct gctgacatcg
      661 agcgcgcgga tcacctggtc agcaccaacg ttggacgatc gatccagtcg atgcggcagg
      721 ccgtgttgga tacaaaagct gcggtcagat ggttgaagaa tgaaggatac gagcaggttg
      781 gaatacttgg tacgagcgta ggatcgtgca tttcattcct ggcctttgct cacgatccag
      841 atctaaacgc cggggctttc aatcacgtct cgggctacgt ggctgacgtt gtctggcatg
      901 gcttatcgac cgcccacgtg cgcgaaggtt tttcaaacca catctcactt gaagaactgc
      961 gtgactactg gtcgccgatc agtccacttc ccttcatgcc gcgcgttgct gcaatgggca
     1021 agagacccat ccgtttcatc atcgccaagt atgacctgac gtttccaata aatctttcac
     1081 acgaagcaat cgccgaagct caacgcaaca atctgccact cgatatcgtc tggctgccat
     1141 gcggacatta cacaacgggc gaaatgc
//
LOCUS       DATCGC010001753         1056 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_291320, whole genome shotgun sequence.
ACCESSION   DATCGC010001753 DATCGC010000000
VERSION     DATCGC010001753.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1056
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291320"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            394..>1056
                     /locus_tag="VIJ87_16760"
     CDS             394..>1056
                     /locus_tag="VIJ87_16760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446081.1"
                     /translation="MRTILFLFLAVLLVTTVMVLPPLTTANKVSQDKGTDSAGMAVGY
                     VQKFAESQPVREFAKLDSGTSAGSPEEIRELDERREQRREKQFAMALNIQRALGLNVD
                     EKNEMNREIMRREDPNAPRTPDRALSTNQNQPKRNGPAPPPPNPPSLTFEGVSIADTI
                     GVGQGFVPPDTNGDVGPANYVQTVNVAFRIWDKAGNPLTSVASLNTLFAPIGGACGSS
                     EDG"
BASE COUNT          259 a          271 c          266 g          260 t
ORIGIN      
        1 atctagtgca aaccgtcatc ccccatggcg aaataaatca ggagcatggc ttccgattgg
       61 tcacgtccgg tgtcctgaac tccaatcagt ctcgtagacg tttatgcact gccacgattg
      121 agcattgtct cttatcgttc atcaagacct cttccaccat ttctgcactc cctgaaataa
      181 ttcgaggttc taaggactcg aaggaacgag ctcaagtatc gacgtgtttt agatctcaca
      241 acgaacctcg ggtggcgtcg acttgaactc gtcgacttgt tttcaaaagt tctcagcctt
      301 tcaacttacg cattctaata gttggtaacg agctgtctgc agtctgcaat caagcgctct
      361 gtcggtctgt caatcgatta aaggagagtc tccatgcgaa ccattttgtt tttatttctg
      421 gctgttttgt tagttaccac tgtgatggta ttgcctccgc ttacgacggc aaacaaagtc
      481 agtcaggata aaggtaccga ttcagcaggt atggcggttg gttatgtcca aaagtttgct
      541 gagtctcaac ctgttcgtga gttcgcaaag ttagatagcg gaacgagcgc cggctcgccc
      601 gaagagattc gggaactgga tgaaaggcgc gaacagcgtc gggagaaaca gttcgcaatg
      661 gccctcaaca ttcaaagagc gcttggtctt aatgttgatg aaaagaacga gatgaaccgc
      721 gagatcatgc gtcgcgaaga tcccaacgcg ccgcggacgc ctgacagagc gctgtcaaca
      781 aaccagaacc agccgaagcg caatggtccg gctccccctc ctccaaaccc gccatcactc
      841 acttttgaag gtgtgtccat agctgacacg attggcgttg gacaagggtt tgttccgccg
      901 gatacgaatg gcgacgttgg acccgcgaat tatgttcaga ccgtgaatgt ggctttccgt
      961 atctgggaca aggcagggaa tccattaact tcagtagcgt ccctcaatac actgtttgcc
     1021 ccaatcggcg gcgcctgcgg tagcagcgag gacggc
//
LOCUS       DATCGC010001754         3388 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_28395, whole genome shotgun sequence.
ACCESSION   DATCGC010001754 DATCGC010000000
VERSION     DATCGC010001754.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3388)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3388)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3388
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28395"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(117..3050)
                     /locus_tag="VIJ87_16765"
     CDS             complement(117..3050)
                     /locus_tag="VIJ87_16765"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HEY5446082.1"
                     /translation="MGAIVFFTQRSIASLNKAESWTSTADMRGIDFWGEAEGLTQSRI
                     RAIVQTRDAYIWLGTDYGLVRFNGTSFTDFTVETGSLRDNEVWAIQEDDEGGLWIGTY
                     GGGLTLLKNGVFRTFTTADGLPDDVVTDLSKDHQGNIWLGTPLGAARYSNGTFTRFST
                     ANGLTENSVTAICTDSSDGVWLATASALHRFDGKKFFEVKGVVEKSDGQLDHLTDGKD
                     GAVWLGFRNGGIKKWRAGSIATFNRRDEHTQRINQLYEDSDGTLWVALREGVVCLRDG
                     KFESVGLGENDANTGVVYSIFRDREDSVWIGFQSNGLARLRTKQLFTISKPPGLPNDS
                     ARSVFQDSNGTLWIGTVNGFAGLKNGRESSYLSLNGQSIGSVKSMGEDTAGNLWIGAE
                     QNLLILAANGLRKCPGWKNGTEGRVIYRDTQGHMWVGTDGEGLFEFTDANGNAKHYTT
                     REGLPSDQVRTLLVDRNGALWIGTHGGGLAKYENGRFIVYTTKDGLAGSRVGASFQDD
                     DGSLWFATRNGLSRFKDGKFFNFTSENGLLVSFVYSMLDDGKGNFWFSCAQGLFRVSK
                     AELRDLADGRIAKVNSIDYGVRDGMKTRAYNVGNQPAAWKTKDGALMFCSMKGVVVVD
                     PNRLYSIGLVPPVHIEKIVINKQQLQVTPDAQLPVGSGEVEIHYAALSYVSPEKVRFK
                     YMLEGVNKEWVDAGSRRFAYYANLPPGQYRFRVMAGYLDGPWNEAGASYSFYLRPRFY
                     QTSVFAGLVVAVAFLLAFLLYKLRMMELKARYSAVLGERNRIAREIHDTLAQNLAGIA
                     LQLDSVGMHTTDLPPSLSQRLDQACNLVRYSLSEARRAVSDLRSDELERHELAAELPE
                     IAAKMAATAEAEAKVQVVGTPRRLSPVIEKNLLRIFQEAMANAVKHAAARNIDIKLRY
                     ESDSLMLSVQDDGSGFDTENIIPLGIGHYGLTGMRERAERIGGRLTLKSQIGRGTELL
                     VEVPI"
BASE COUNT          799 a          937 c          807 g          845 t
ORIGIN      
        1 aagcctgtgc gaaccacaaa gtggtcttca acaatcatga cacgcagtcg ttcagtttcg
       61 ttcatcagtg tctttacggg cgagccacac gctaccgctt agtggtactg acctcgttag
      121 attggcactt ccaccaacaa ctctgtgccg cgaccaattt gactcttgag tgtcaaacgc
      181 ccgccaattc gctcagcccg ttcacgcatt ccggttagcc cgtagtgtcc gataccaagg
      241 ggaataatgt tctccgtatc aaagccactg ccgtcatcct gcactgacag cattaacgag
      301 tcagactcat atctcaattt gatatcgatg ttgcgagcag ctgcgtgctt gactgcatta
      361 gccatcgctt cctggaagat ccgcaagaga ttcttttcaa tcaccggact caaacgacgc
      421 ggggtgccaa ccacttgcac cttggcttcc gcctccgccg tcgctgccat cttcgcggcg
      481 atctcgggaa gctcggcggc gagttcatga cgttccaatt catctgaacg aagatctgaa
      541 acagctcgcc tcgcttcaga caggctatag cgaacaaggt tacaggcttg atcaagacgt
      601 tgactgaggc ttggcggtaa gtcagttgtg tgcatgccaa ccgagtcgag ttgtagcgct
      661 atacccgcaa ggttttgcgc gagcgtgtcg tggatttcgc gtgcgatacg gttgcgttca
      721 ccaagcaccg ccgagtatct cgcttttaac tccatcatcc tgagtttata gagcaggaat
      781 gcgagcagga acgctactgc aaccaccagc cctgcaaata cagacgtctg ataaaaacga
      841 ggtcttagat aaaaggagta tgaggccccg gcttcgttcc atgggccatc gagatatccc
      901 gccataacgc ggaaccggta ttgacctggt ggtaaattag cgtagtaagc aaaacgtctg
      961 gagcccgcat ccacccattc tttattcacg ccctcgagca tgtatttgaa acggaccttt
     1021 tccggagaaa cgtagctcaa agctgcgtag tggatttcaa cttcacctga accgacaggt
     1081 aactgagcat ccggcgttac ttgtagctgt tgcttgttga tgacgatttt ctcgatgtgc
     1141 accggaggaa cgagtccaat cgaataaagt cgattcggat cgacgaccac aacacccttc
     1201 atcgaacaaa acatcaacgc gccatctttg gtcttccacg ccgccggctg gttcccgacg
     1261 ttgtaagccc gcgtcttcat tccgtcgcgc actccgtagt cgatcgaatt caccttagcg
     1321 atgcgtccgt cggcgagatc ccggagttct gctttgctaa cgcgaaacag tccctgggca
     1381 caactaaacc aaaagtttcc ttttccgtcg tctagcattg agtagacaaa actaaccagc
     1441 agcccgttct ccgaagtgaa gttgaaaaac tttccatctt tgaacctgct gagaccgttg
     1501 cgcgtggcaa accaaaggga gccgtcgtcg tcctggaaac tcgcacccac acgacttccc
     1561 gcgagaccgt ccttagtcgt gtaaacaata aatcgaccgt tttcatattt ggcgagacca
     1621 ccaccgtgtg ttccgatcca gagtgcacca ttacgatcaa ctagaagcgt cctcacctga
     1681 tcactcggta agccttcgcg tgttgtgtag tgctttgcat ttccgtttgc gtcagtgaat
     1741 tcaaaaagac cttcaccgtc ggttccaacc cacatgtgtc cctgcgtgtc gcgataaatg
     1801 acgcggcctt cagttccatt tttccaacct ggacacttgc ggagcccgtt ggctgcaagt
     1861 atcagtagat tctgttctgc gccgatccaa agattccccg ctgtatcttc ccccatcgat
     1921 ttaactgagc cgattgactg gccgttgaga cttaggtaac tcgactctct gccattcttc
     1981 agcccggcaa atccgttgac ggtgccgatc caaagggttc cattgctgtc ctggaaaact
     2041 gaccgggcgc tgtcgtttgg cagaccagga ggtttggata tcgtgaatag ttgtttggtt
     2101 cttaatcggg ccagaccatt ggactgaaaa ccgatccaga cactatcttc gcggtcgcgg
     2161 aagatgctgt agacaacgcc ggtgttcgca tcgttttctc caagtccgac tgattcaaac
     2221 ttcccatctc gaagacagac gactccttct cgtaaggcca cccaaagagt tccgtcagaa
     2281 tcttcataga gttgattgat gcgttgggta tgctcgtctc gtcgattgaa tgtagcaatg
     2341 gaaccggccc tccatttctt gattccaccg tttcgaaagc caagccacac cgcaccatct
     2401 tttccgtccg tcagatgatc aagttgaccg tcactctttt caaccacgcc tttcacttca
     2461 aaaaactttt tgccatcgaa acgatgcagt gcggacgcgg tagccagcca aactccatcg
     2521 gatgaatcgg tgcatatcgc tgtgacagag ttttcagtca atccgtttgc ggtgctgaaa
     2581 cgcgtgaacg taccatttga gtaacgagca gcgccgagtg gtgtacctaa ccagatattg
     2641 ccttgatgat ctttactgag gtcagttacg acgtcatctg gaagaccgtc ggctgttgtg
     2701 aaggttcgga acacaccatt ctttaggaga gttaacccgc cgccgtaagt cccgatccaa
     2761 agtcctcctt cgtcgtcctc ctgaattgcc cacacttcgt tgtccctcaa gctcccagtt
     2821 tcgactgtaa agtcagtaaa gctggtaccg ttgaagcgca ctaacccgta atcagttcca
     2881 agccagatgt aggcgtcgcg agtctggacg attgcccgga ttcttgactg agttaagcct
     2941 tcagcttcgc cccagaagtc tatcccgcgc atgtcggcag tcgaggtcca cgactcggct
     3001 ttgttcaagg aggcaataga tcgttgagta aagaagacta tggcgcccaa aagaacgcag
     3061 aggaaaagtc ctaattgttt tcgagttcga ccttgcaacg actctccgat cctaaatggt
     3121 tcgaatgaga tcgggtcacg ctagctcgct tgattggtgc cgaagccgca agaaacgtgg
     3181 cggtttgttt gcccgtgatt atacccaagc cgcctgcttt tcataggtat tcaaggcatc
     3241 ccaaagactg cggcgccagg tctcgcattc agggagagtt cgttttactc caaaagttct
     3301 gtctgggaac aaattactta cagctcttat caagtatctt gcaacaagag cgtcgcagtg
     3361 gcaagggagt cagtaccaca acgcggta
//
LOCUS       DATCGC010001755         1606 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_389998, whole genome shotgun sequence.
ACCESSION   DATCGC010001755 DATCGC010000000
VERSION     DATCGC010001755.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1606
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_389998"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(60..1172)
                     /locus_tag="VIJ87_16770"
     CDS             complement(60..1172)
                     /locus_tag="VIJ87_16770"
                     /EC_number="2.7.1.6"
                     /inference="COORDINATES: protein motif:HMM:NF003705.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004335 - galactokinase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006012 - galactose metabolic process
                     [Evidence IEA];
                     GO_process: GO:0046835 - carbohydrate phosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase"
                     /protein_id="HEY5446083.1"
                     /translation="MSSSSHRVFRAPGRVNLIGEHTDYNDGFVMPVAINFSTRIDLLP
                     IPERRIEIYSESFHEQVVFELDNPPSKAIGHWSDYPVGVASMLLQAGYELSGARLSIQ
                     SDVPIGSGLSSSAALEVATAYALTKASNLNIERAELAKLCRKAENEFVGARVGIMDQF
                     ISLFGEKDKALLLDCRSLHFKLLPLSSDAQLVICNTMVKHALASSAYNERRMQCEEGV
                     ERLSSVLPNVKALRDVTITQLEQLAGLMREVVYRRCRHIITENERVLAAGEALEQSNL
                     DRLGELMNQSHESLRDDFEVSCEELDLMVNLARGIDGVFGARMTGGGFGGCTVNLVAR
                     DKADNFKSLVAAAYQKATGIAPEIYVCNAVQGAEEI"
     gene            complement(1307..>1606)
                     /locus_tag="VIJ87_16775"
     CDS             complement(1307..>1606)
                     /locus_tag="VIJ87_16775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY5446084.1"
                     /translation="QKVIVARLLHQDADILLLDEPTRGIDIGSKAQVYETIARCAEQN
                     KAVLMVSSYLPELFGMCDRLAVMSRGRLSEVRPIAEWTPESVLQAAIGSEVQVAV"
BASE COUNT          401 a          446 c          369 g          390 t
ORIGIN      
        1 acgatttgct accatcgtgt tacaaagcgg cgcgccggac cgccacactc caagaacttt
       61 caaatttctt ctgcaccttg caccgcgttg caaacataaa tctccggtgc gattccggtg
      121 gctttctgat aagcggcagc aactagactc ttgaagttat ccgccttgtc tcgcgcgacc
      181 agattaaccg tacaaccacc aaatccgcca ccggtcattc gtgcgccaaa aacaccatca
      241 attccgcgtg caaggttcac cattagatca agctcttcac aactcacctc aaaatcatcc
      301 cgcaaacttt catgggattg attcatcaac tctcccaatc gatccaggtt actctgctcc
      361 aaagcttcgc cggcagccag gacgcgttca ttttcagtga tgatatgacg gcaacgtcga
      421 tagacaactt ctcgcattag acccgccagt tgttcaagct gagtgatcgt cacatctcgc
      481 agcgctttca catttggcag aacagaactt agtcgctcga caccttcttc acactgcatt
      541 cgacgttcat tgtacgcact cgaagccagt gcatgcttca ccattgtgtt gcaaataacc
      601 aactgcgcgt cgcttgataa cggcaggagt ttgaagtgaa gcgaccggca atccagaagc
      661 agggctttgt ccttctcacc aaacagagaa atgaactgat ccatgatacc gacgcgcgcc
      721 ccaacaaatt cgttctcagc tttgcggcaa agcttggcca gctcagctcg ttcgatattc
      781 agattagaag ccttggtcag tgcgtaggcg gtcgcaactt caagcgcagc ggatgaactc
      841 aaaccggacc caattggcac gtcactttgg atactaagac gagcaccact tagttcgtaa
      901 ccagcttgaa gtaacattga tgcgacgcca accgggtagt cgctccaatg tccaatcgct
      961 ttcgaaggcg gattatcaag ttcgaagaca acctgttcat ggaagctttc ggaataaatc
     1021 tcgattcgtc gttcaggaat tggaaggaga tcaatacgcg tggagaagtt aatcgcgacc
     1081 ggcatcacga agccgtcgtt gtaatcagtg tgttccccga tcaagttgac acgaccggga
     1141 gcacgaaaga cgcggtggga agaactagac atgtccgata ggctttagct tgtcgttgga
     1201 aacagcagtt tgggccgcag atgttcgcaa atcaaaaatt gatttcaacc agttaagtcg
     1261 cctgacttgt ttgtttgatc tgtgcgtagc tgcggaaagc tgctgctcaa actgcgactt
     1321 gaacttcgct tccgatcgct gcttgtagca cgctctccgg tgtccactca gctatcggcc
     1381 taacttccga caatcgcccg cggctcatca ctgccagacg atcgcacatt ccaaacagtt
     1441 caggcagata cgaactcacc attaacacgg ccttgttctg ttcagcgcat cgagcaatgg
     1501 tttcgtagac ctgggcctta ctgccaatgt cgattccgcg cgttggttca tccagcagaa
     1561 gtatgtctgc gtcctggtgt agcaggcgcg cgacgattac tttttg
//
LOCUS       DATCGC010001756         1219 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_390007, whole genome shotgun sequence.
ACCESSION   DATCGC010001756 DATCGC010000000
VERSION     DATCGC010001756.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1219)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1219)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1219
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_390007"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..748)
                     /locus_tag="VIJ87_16780"
     CDS             complement(<1..748)
                     /locus_tag="VIJ87_16780"
                     /inference="COORDINATES: protein motif:HMM:NF016932.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="suppressor of fused domain protein"
                     /protein_id="HEY5446085.1"
                     /translation="MVKTLFLALLLVLFLVQGFGAMDQRGDEKLWQEVYAAREKYYES
                     SFGKLPSEIAKMANLIGVWPGGGLMVIPATKLGPDVWVYTTFGFTNPDMPTTITLVDS
                     KGNNVSRQNTLKRKKNIRTPTNRPGHGYEMLVITKERAEWPLGFLQWVANAEILNDAD
                     LLSRVENYGGLTVEEIQVDDAKSINVLIAKAQTPLPSGAALPNGKMELLVATVITEDE
                     MRWSMTNGRSALLAKLQSAGVGQISDLKRKS"
     gene            complement(875..>1219)
                     /locus_tag="VIJ87_16785"
     CDS             complement(875..>1219)
                     /locus_tag="VIJ87_16785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446086.1"
                     /translation="IYLVSLVLILSGSSMIYLMMAPVLRGESGRVSGWPLAILVAGLV
                     IPFVARARQTLLVRMNKGRYEWKPQLAMDRKTRNTYTEIQNEILEACRKAGIRTQVSE
                     HAAEQALGADSP"
BASE COUNT          278 a          343 c          270 g          328 t
ORIGIN      
        1 ccgatttgcg tttgaggtca gagatttgcc cgacgcctgc agattgtagt tttgccaaca
       61 aagcacttcg gccgtttgtc atggaccatc tcatttcatc ctcggttatc accgtagcaa
      121 cgagtagttc catcttgcca ttcggtaacg ctgcacctga aggaagcggt gtctgcgctt
      181 tagcgatgag cacattaatt gacttggcat cgtcgacctg aatttcctcg acggtaagac
      241 cgccgtaatt ttcgacgcga ctcaataagt cagcgtcatt caatatctcc gcgtttgcga
      301 cccattgaag aaacccaagc ggccattctg ctctctcttt agtgattaca agcatctcgt
      361 aaccatgtcc tggtctgtta gttggcgtgc gaatgttctt cttccttttc aaagtgtttt
      421 gcctgctaac attgttcccc ttcgagtcta caagtgtgat cgtcgtcggc atgtcaggat
      481 ttgtgaatcc gaacgtggtg taaacccaca catcagggcc cagcttggtt gctggaatta
      541 ccattagtcc accaccgggc caaacgccta tcagatttgc catctttgcg atctcgctag
      601 gcaacttccc aaagctcgac tcatagtact tctctctcgc ggcatacacc tcttgccaga
      661 gtttctcgtc cccgcgttgg tccatcgctc caaagccttg gaccaggaac agcaccaata
      721 gcagagccaa gaacaatgtt ttaaccattc gcatgaccat aatgttcttg cacatcgggt
      781 gcaacgaagg actctttaga acgccatcta gtttatgaac caccgaacgt tgcgcttgag
      841 cggctcgccc gcgcaactca ccaaagaagc ctgctcatgg cgagtccgct ccaagcgctt
      901 gttcggcggc gtgctctgaa acctgcgttc taatacctgc cttacgacaa gcttctaaga
      961 tttcattctg gatttccgtg taagtgtttc ttgttttgcg atccattgct agctgcggtt
     1021 tccattcata gcgccctttg ttcattctca ctaagagtgt ctgtctggcc cgagcaacaa
     1081 agggtataac caagcccgct acgaggatgg ctagcggcca gccgctcact ctcccacttt
     1141 cgcctcgcag tactggggcc atcatcagat agatcatcga agagcccgaa aggattaaca
     1201 ccaaagagac caaatagat
//
LOCUS       DATCGC010001757         2438 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_490989, whole genome shotgun sequence.
ACCESSION   DATCGC010001757 DATCGC010000000
VERSION     DATCGC010001757.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2438)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2438)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2438
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_490989"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..702
                     /locus_tag="VIJ87_16790"
     CDS             <1..702
                     /locus_tag="VIJ87_16790"
                     /inference="COORDINATES: protein motif:HMM:NF026220.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YCF48-related protein"
                     /protein_id="HEY5446087.1"
                     /translation="GFLLAGKTIFVTHDNGVRWESSRSFLPTEFEGADVELYSVRFSS
                     KKKGWVVGSISRGDRVVDSILVYTDDAGESWRRQRTPSRTELIHIDFVSDKRGWIVGE
                     GGTILNTVDAGETWMRQNSGTKSTIYHIDFRDDKKGWAVGERGTVLRTTDGGETWSPV
                     IVSTKVTLLSVQFLNDDDGWAIGRGGTILRTEDQGRTWLQQESSTKQNLYALHFNKKI
                     GWAVGGDGILLRYEK"
     gene            complement(965..>2438)
                     /locus_tag="VIJ87_16795"
     CDS             complement(965..>2438)
                     /locus_tag="VIJ87_16795"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HEY5446088.1"
                     /translation="PEGTTSRTSREIADQVARVGASISAGANSDYTIVAASALTRFNE
                     QILELLAEIVLQPSFPENEVELAKQNTKESLRQQRAQPSFLASEMVARVMFGEHPYAK
                     VSPTVESIDASTRDDFVSFHRANFVPNNAVFIAVGDVRFDDVVSRLESLFSTWGKGAD
                     LVTSFPAPPSRTKRSAYLVDRHGSAQSNIVIANSGITRTSPDYFPMLLLHTVYGATAS
                     SRLFMNLREEKGYTYGAYSNLDARRAAGTFRSTAEVRTAVTGDSLKEFFFELERIRSE
                     RVSDKEINDAKSYLTGVFPIRLETQEGLIDQLVQIKMLNLPITYLETYRDRVQAVTID
                     DILRVANLYVRPDESALIVVGDGSAVLDQIKPYCEDIETYTTGGKKKEHAAGQAEVTD
                     VVGAWAIEVETPMGQAIPATLTITDSTSNLSAKITSEMGDADLGTVEIQNGSFEKATS
                     IDMDGHSVPVEISVRFEGENIEGTLVMQGTPLPFTGSKDS"
BASE COUNT          591 a          601 c          624 g          622 t
ORIGIN      
        1 ggctttctcc tggctggaaa aacaattttt gttacacatg acaatggagt gcgctgggaa
       61 tcgtcgcgaa gctttctacc aactgaattt gaaggcgccg acgtcgagct ttacagcgtt
      121 cgtttctcaa gtaaaaagaa gggatgggtt gttggatcaa taagtcgagg agatcgcgtc
      181 gtagacagca tcctggtata caccgatgac gctggtgaga gttggcgtcg acaaagaacg
      241 cctagtcgca ctgaacttat tcacatcgac tttgttagcg acaaacgtgg ttggattgtc
      301 ggtgagggcg gcacgattct taacaccgtt gacgccggcg agacttggat gagacagaat
      361 tccggaacga agtcgaccat ctatcacatt gattttcggg atgacaaaaa gggttgggca
      421 gtcggtgagc gcgggactgt tctgcgaact actgacggtg gggaaacctg gagccctgtt
      481 attgtcagca caaaagtaac gctcttgagc gtgcaattcc tcaacgatga cgatggatgg
      541 gcgattggtc ggggaggaac gatcttgcga acagaagatc agggcagaac ctggttgcaa
      601 caagaatctt caaccaagca aaacctttac gcattgcatt tcaacaagaa gatcggatgg
      661 gctgttggcg gcgacggaat actactgcga tatgagaagt aaaaagcgga acgcgtgacg
      721 cgaagcaacg tgatttgttg attgcgacat ctgaccatta gaggttattc ggatagtcgc
      781 aacatagcga cgaccataac actcggttcc tcctgtgatt tacgcccggc atgtcggcca
      841 tgccgggcgt tttgttgtgc catgtacgta tgctttagct tgtcgcggag cccactgcga
      901 acgaccttgc aaacacagcg acaagctaaa gcatatcgga catggtactg acttcctctg
      961 cactctatga gtctttactg cccgtaaacg gaagcggcgt accttgcata accagcgtgc
     1021 cttcaatgtt ctcaccttcg aatcgcacag agatttctac tggcaccgaa tgaccgtcca
     1081 tatcgataga agtcgctttc tcgaacgatc cgttttggat ttctaccgtt cccaaatccg
     1141 cgtcgcccat ttctgaagtt atcttggcgc taagatttga ggtgctgtcg gtaatcgtta
     1201 gggtagcagg aatcgcttgt cccatgggcg tctccacttc gatcgcccag gcgccaacta
     1261 catcagtaac ctcagcttga cctgcggcat gttccttctt ttttcccccg gtcgtgtagg
     1321 tttcaatgtc ttcgcaataa ggtttgattt gatccagcac cgctgacccg tcgcccacca
     1381 cgatcaacgc tgattcatcc ggtctgacat ataaattagc tacacgcaga atatcgtcta
     1441 ttgtcactgc ctggactcta tcgcgataag tctccaggta agtgatcggg aggttcagca
     1501 tctttatttg aaccagctga tcaatgagtc cttcctgagt ctcgaggcgg attggaaaaa
     1561 ccccggtcag gtacgacttc gcatcgttaa tctctttgtc ggatacgcgc tcacttcgaa
     1621 ttcgctctaa ttcgaaaaag aactccttca acgaatctcc ggttactgcg gttctaactt
     1681 cagctgttga tcgaaaagtc cctgctgccc gacgcgcatc gagatttgaa taagcgccgt
     1741 aggtgtagcc cttctcctca cgcaggttca taaacaatcg cgaggaagct gttgctccgt
     1801 acactgtgtg cagcagaagc attggaaagt agtccggact tgtcctggtt ataccgctat
     1861 tcgcaatgac gatgtttgac tgtgcggagc cgtgacgatc aacaaggtaa gctgaacgtt
     1921 ttgttctgga tggtggtgcc ggaaaacttg ttactaagtc ggcgcctttt ccccaagtcg
     1981 agaatagtga ttccagtcgt gaaaccacat cgtcaaaccg aacatcgccg acggcaatga
     2041 atactgcatt gttggggacg aaatttgctc gatggaagct gacaaaatca tcgcgagttg
     2101 acgcgtctat cgactcgacg gttggtgaga ctttggcata agggtgttcg ccaaacatta
     2161 ctcgcgcaac catctcactc gccagaaacg aaggctgtgc gcgttgttgt ctcaagctct
     2221 ccttggtgtt ttgtttcgcc agctcaactt cgttctcagg gaacgaaggc tgcaaaacga
     2281 tttcagccag caactccaaa atctgctcgt taaatcgcgt gagagctgac gcagcaacga
     2341 ttgtgtaatc tgaattggca ccggccgaga tacttgctcc gacacgtgca acttggtctg
     2401 caatttcccg gctggttctt gacgtggtgc cttcggga
//
LOCUS       DATCGC010001758         2073 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_458815, whole genome shotgun sequence.
ACCESSION   DATCGC010001758 DATCGC010000000
VERSION     DATCGC010001758.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2073)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2073)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2073
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_458815"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1000)
                     /locus_tag="VIJ87_16800"
     CDS             complement(<1..1000)
                     /locus_tag="VIJ87_16800"
                     /inference="COORDINATES: protein motif:HMM:NF012652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase, T2SS/T4P/T4SS family"
                     /protein_id="HEY5446089.1"
                     /translation="MSAKLGEILVRENLISPQHLREALDYQREHGGRLGFNLVKLGLV
                     SDDMITAVLSRQYGIPSVNLDLFQIDESVLRLIPQEVAQKHSVLPLSRVGATLTLAMV
                     DPTNVFAMDDVKFMTGLNVEPVVVAEASIQHAIAKYYGTSREIELSSVSNDEPVFETS
                     AKGSNGHGAITHADLVSLDSIDFETGQAEDVEVLEDNEEIDLSTLSRMSEDAPVVRLV
                     NVLLVDALRRGASDIHVEPYEKELRIRFRIDGVLYDVMHPPLKLRDALISRVKIMSKL
                     DISEKRLPQDGRIKIKVKVDSRSRELDFRVSTLPTLFGEKVVLRLLDKENLMLDMTK"
     gene            complement(1349..>2073)
                     /locus_tag="VIJ87_16805"
     CDS             complement(1349..>2073)
                     /locus_tag="VIJ87_16805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5446090.1"
                     /translation="YTEAINQYGEGLAADAEQPALLTNRALAYKGRGVERYNGSIKLT
                     DDAAKKTALEGAQADFKAASEAASKAVTLLKAVPTPTDPGELQRVNANKYAAFSTYAE
                     SMRLYATKGDPSQADTALAAFKDYINVETDPVKKAKAQLDAAQMLLDAGSGEKALAEY
                     QAILATQPDSPDANLGAGLAIYATGDKTKFQEAANYLQHFVDVAPDSHKFKSAAKDIL
                     TELKNTEKVVPEKTTPKRTKRP"
BASE COUNT          477 a          501 c          548 g          547 t
ORIGIN      
        1 acttcgtcat gtcgagcatg aggttttcct tgtcgaggag acgaagaact actttctcgc
       61 caaacaaggt aggcagggta gaaacacgaa aatccagttc acgggagcgc gaatcaacct
      121 ttactttgat cttgatgcga ccgtcctgag gaaggcgttt ttcagagatg tctagtttcg
      181 acatgatctt cacgcgcgag atcaacgcgt cgcgaagttt caaaggagga tgcatcacat
      241 cgtaaagaac gccgtcgatt cggaacctga tgcggagttc cttttcatat ggttcaacgt
      301 gaatgtcaga cgcaccccgt cgaagagcat ccacgaggag gacgttaaca agacgaacaa
      361 ccggcgcgtc ctcgctcatg cgcgatagag tcgaaagatc gatctcttcg ttgtcttcta
      421 gaacttcaac gtcttcagcc tgtccagttt caaagtcgat gctgtcgagc gacacgagat
      481 cggcgtgagt tatggcgcca tgcccgttcg aacccttcgc acttgtttcg aagactggtt
      541 catcgtttga aacagaggag agttcaatct cacgagaggt cccgtagtac ttcgcaatcg
      601 cgtgctggat actcgcttct gcaacgacga ccggttcaac attcaaaccc gtcatgaact
      661 tcacatcgtc catcgcaaac acgttggtcg gatcgaccat tgcgagcgtg agtgtcgccc
      721 cgacgcgtga gagagggagc acagaatgct tttgagcgac ttcttgaggg attaatctga
      781 ggactgattc gtcgatttgg aagaggtcga gattgacgga gggaatgccg tactgtcgtg
      841 agaggacggc agtaatcatg tcgtcgctga ccaacccgag tttcacaaga ttgaagccca
      901 gtcgaccacc gtgttcacgc tgatagtcga gtgcctctct caagtgctga gggctaatga
      961 gattttcgcg aacgagaatt tcgccgagtt tggctgacat ttgtagattg atcgacccgc
     1021 ctgggaagtt ccttcgactt ggatggaaga tgccgacgaa gcgcgagggc agttttagcg
     1081 cagtaaaaca acagcggcgc tcaacactgt tgcgcactca tagtacagtt tgaacacatt
     1141 gagtgtcaat aaacaattcc agcggataac gtgtaaaaac tcacgttttt tcatgtgtcg
     1201 gacgatgtcg ttggataact cttgggcttt tgagagcggg gttctaactt ggagaaaacc
     1261 tatagttttc gacctgatcc tcctgaaaag aaaaagggct gcgacctgga atggtctcag
     1321 cccttggctt tccgactaca tcaccgggtt acggacgttt ggtccgcttg ggggtagtct
     1381 tttcaggaac aactttctca gtgtttttca gttcggtcag gatatctttc gctgccgatt
     1441 tgaacttatg agaatcaggg gcaacgtcaa cgaaatgctg caggtagttg gctgcctcct
     1501 gaaacttcgt tttgtcaccg gttgcataga ttgccaggcc ggctcccaaa tttgcatcgg
     1561 gactatcagg ctgagtcgcc aaaatcgcct ggtattcggc cagggctttt tcccctgaac
     1621 cggcatcaag cagcatttga gccgcatcaa gctgtgcctt tgctttcttt acaggatcgg
     1681 tctcaacgtt gatgtagtct ttgaaagctg ccagcgcagt atctgcctgg cttggatcgc
     1741 ctttggtggc gtacaagcgc atcgattccg cgtaggtcga aaacgcagca tatttgtttg
     1801 cgttcacgcg ctgtagttca cctggatctg tcggagtggg tacagccttt agcaacgtca
     1861 ctgcttttga tgctgcttca gacgctgctt tgaaatcagc ctgtgcgcct tcaagcgcag
     1921 ttttctttgc ggcgtcgtca gtaagtttga ttgatccgtt ataacgttcg actccacgtc
     1981 ctttgtaggc cagtgctcga ttagttagga gagctggttg ttcggcatcg gcagcaagtc
     2041 cctcaccata ttggttaata gcttcggtgt act
//
LOCUS       DATCGC010001759         1218 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_193176, whole genome shotgun sequence.
ACCESSION   DATCGC010001759 DATCGC010000000
VERSION     DATCGC010001759.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1218)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1218)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1218
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193176"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..363
                     /locus_tag="VIJ87_16810"
     CDS             <1..363
                     /locus_tag="VIJ87_16810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446091.1"
                     /translation="ERRVFETTAPGRDRLADALEGTHWVIERVHQPFLIWLALSWQAR
                     PRAFRKQLNSRKRFLEERLAEEHATLADVMTEVGHPYHEAVWMLQLIIEQMETELRWV
                     SRILEDAAKRAPARNRGV"
     gene            complement(480..>1218)
                     /locus_tag="VIJ87_16815"
     CDS             complement(480..>1218)
                     /locus_tag="VIJ87_16815"
                     /inference="COORDINATES: protein motif:HMM:NF015552.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tellurite resistance/C4-dicarboxylate
                     transporter family protein"
                     /protein_id="HEY5446092.1"
                     /translation="VATVLWFIGILLWVVIMYTFVTAMTVRENKPSVEVGLNGGWLLA
                     VVATQSISVLGTLLASRFANYREPVLFFTLCMFLLGCMLYLLLITLIFYRFTFVNVTM
                     ALLTPPYWINMGAVAITTLAGARLIIAAPDWALLNEVLPFLKGFTLFFWSAGTWWIPL
                     LFILGFWRHVYKKFPLKYDPQYWGMVFPFGMYTVCTFQLSKAINFPPLMVIPRYFIYL
                     ALAGWIAVSVGLIAKLTFKDKLERNPM"
BASE COUNT          332 a          297 c          333 g          256 t
ORIGIN      
        1 gagcggcgag ttttcgagac cactgctccg ggccgtgatc gcctggccga cgcgctggag
       61 ggtacgcact gggtaatcga gcgcgtgcat caaccatttc tgatttggct ggccttgtca
      121 tggcaagcga ggcctcgcgc ctttcgaaaa caattgaaca gccggaagag atttctcgaa
      181 gaacgacttg ccgaagaaca cgccacgctg gccgacgtga tgactgaggt tggacatcct
      241 tatcatgaag cggtgtggat gttgcaattg atcattgagc agatggaaac ggaacttcgt
      301 tgggtaagca gaattctgga agatgctgcc aagcgtgcac ccgcgcgaaa tcgaggtgtt
      361 tgagtcccgt gtagagttgt tttgatcact ggaagctgcc gaagaagcca gggcgacatt
      421 aatcacagcc cttcctcatg tcgatgacgg cctttcaatc aagactcgag tgcttcatct
      481 cacatcgggt tgcgttcgag cttgtctttg aaagttagtt ttgcaatcag gccgacggaa
      541 acggcgatcc atcctgcgag cgccaggtag atgaagtaac gcggaatcac catcaaaggt
      601 gggaagttaa ttgcctttga gagttgaaag gtgcagaccg tgtacattcc gaaaggaaag
      661 accattcccc agtattgcgg atcatattta agcggaaatt tcttgtacac gtgacgccag
      721 aatcccagga taaagagaag agggatccac cacgtgcccg ccgaccaaaa gaatagtgtg
      781 aaccctttta gaaacggtag cacctcattc aatagagccc agtcaggggc cgcgatgatt
      841 agtcgcgcac ccgccagagt tgtgattgct accgctccca tgttgatcca gtaagggggt
      901 gtgagtaatg ccatcgtaac gttcacgaat gtgaagcgat aaaagatcaa agtgatcagc
      961 agcaggtaga gcatgcagcc gagcagaaac atacaaagag tgaagaagag aactggctcg
     1021 cgataatttg caaaacgact ggccaacaaa gtccccagca cagaaattga ttgcgtggct
     1081 acaacggcca gcaaccaacc accgttcaga cctacctcga cggatggctt attctctcgc
     1141 actgtcatgg ccgtgacaaa cgtgtacatg atgacgaccc agagcaggat tccgatgaac
     1201 cagagaacgg tcgccact
//
LOCUS       DATCGC010001760         1160 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_422986, whole genome shotgun sequence.
ACCESSION   DATCGC010001760 DATCGC010000000
VERSION     DATCGC010001760.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1160)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1160)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1160
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_422986"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            359..763
                     /locus_tag="VIJ87_16820"
     CDS             359..763
                     /locus_tag="VIJ87_16820"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY5446093.1"
                     /translation="MQEKILEEWDRLNILIVDDSQPLQERVFAMLKGVTALENIGQAY
                     SVAEARRVISEHQPAIVILDIQLGDGSGIDLLREIKQKYPAIRFIIFTNQCEAFYRQR
                     CTDLGADFFLCKSTGAKSLVATSTDLAADVSH"
     gene            768..>1160
                     /locus_tag="VIJ87_16825"
     CDS             768..>1160
                     /locus_tag="VIJ87_16825"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY5446094.1"
                     /translation="MIRQPYENNDIVPQDSRGTSNSNALSAEPYLSRIAHDYAEEIQA
                     ELLTLMQEHESLRRSEELFRDFFENSKEAIYSHDLSGRYLMVNRAGEDLLGYSREELL
                     QKTVFDLTPACYFAQVGQNLKQKLADHAP"
BASE COUNT          301 a          301 c          266 g          292 t
ORIGIN      
        1 atctggtcga gtaacgtctc caatttgtag ggcaaactcc tacaaataac tggcccattt
       61 accttacacc ctaatcatca atgcgctgat atcaccattg tcgcctgacc tgtattctcc
      121 ccctcgcttg aaccgataat cccccggaaa gaggcgctgg ttcaggtagg aaggacggga
      181 aaagcgcccg ccaccctaaa aagtggatcg cagtgctccc cagcaccgtc cttcgtcatt
      241 tttcatttcc aaccggcaga ctggtttgtg aagcaggaaa cttcaaactg gcctataaag
      301 caagcactga caatctgaca cccttatgga tatcaaatca caactggcga taactcggat
      361 gcaagaaaaa atccttgagg agtgggaccg cttgaacatt ttaatcgtcg acgattcgca
      421 accattgcag gagagggtat ttgcaatgct caaaggcgtg accgcgttgg aaaatatcgg
      481 tcaggcttac tccgtcgccg aagcgcgccg tgttatctct gagcaccagc ctgcgattgt
      541 cattctcgat attcaattgg gcgatggcag tggtatcgat cttcttcggg agataaaaca
      601 gaagtacccg gcaattcgtt ttatcatttt caccaatcaa tgcgaggcgt tctacaggca
      661 acgttgtaca gatctcggag ctgatttctt tctttgtaag tctacgggtg ccaagtcgct
      721 tgttgctacc agcacagact tggcagctga cgtaagtcat taaagccatg attcgtcaac
      781 cctacgagaa taacgacatt gtcccccagg atagtcgagg tacctcgaat tcaaatgctc
      841 taagtgctga gccatatctc tcccgaatcg ctcatgatta cgccgaagag attcaggctg
      901 aattgcttac cctgatgcag gaacacgaat ccctgcgtcg cagtgaggag cttttccgcg
      961 acttctttga gaattcgaaa gaagcgatct actcacacga tctgagcggt cgatatctca
     1021 tggtaaatcg ggcgggcgaa gatctcctcg gttactcccg agaagagctt ttgcagaaaa
     1081 ctgtctttga tttaactcct gcgtgttatt tcgctcaagt tggtcagaac ctcaagcaga
     1141 agcttgccga tcacgcaccc
//
LOCUS       DATCGC010001761         1283 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_193197, whole genome shotgun sequence.
ACCESSION   DATCGC010001761 DATCGC010000000
VERSION     DATCGC010001761.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1283)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1283)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1283
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193197"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..951)
                     /locus_tag="VIJ87_16830"
     CDS             complement(<1..951)
                     /locus_tag="VIJ87_16830"
                     /inference="COORDINATES: protein motif:HMM:NF024956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0030420 - establishment of competence for
                     transformation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HEY5446095.1"
                     /translation="MKKNPHSRLFSLYPLTQLASAYLAGVVVSHSITIKLLLPINACA
                     VCSVGALALFARRKLKAAGLTILSAMFFAGLLLAIIEQRTTPTDSVKRFLDEGMIDPQ
                     KQVLLTGVLDSPPEFARDRLHLTLRVESLVAGGTEGKTSGVVALLATFRTATSEQEYR
                     QLNLHYGSRLQVKTTLNRSNAYRNPGVSTLTEYLDRKNYEATGVVKSPTAIAVTGEVR
                     VFKPLAWLYAWRESLQRRIDQNFSADTAGILDAAVLGNRYNLSRSTEERFRDAGTFHV
                     LVISGLHISFLGGLVFLIARRLTRRRILQFVISSLIVWGYT"
     gene            complement(1004..>1283)
                     /locus_tag="VIJ87_16835"
     CDS             complement(1004..>1283)
                     /locus_tag="VIJ87_16835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446096.1"
                     /translation="DYGGFDPNAKLIFFSCSDGTLSIFHEKSADIYEDAGALKTQPSA
                     RTMAFDPKTKNIYLPAAEYTETPATEPGRRPTRTMKPGSFVVLVVSKT"
BASE COUNT          329 a          332 c          325 g          297 t
ORIGIN      
        1 ggtgtaaccc cacacgatca agctcgagat cacaaactgg agtattcgcc ttcgtgtcag
       61 acgtcgggca atgagaaaca ccagtccgcc gagaaaactg atatgcaagc cactgatcac
      121 gaggacatga aatgtaccgg catcacgaaa gcgttcttct gtgctcctcg agaggttgta
      181 acgattgccc agcactgcgg cgtccaggat tcctgccgta tcagcagaaa agttttggtc
      241 aattcttctt tgcaaacttt ctcgccacgc atacaaccat gccaatggct tgaagacgcg
      301 aacttctccc gtgaccgcaa tcgcggtagg gctcttaaca actcccgtgg cctcgtagtt
      361 cttgcggtcg agatattcag tgagagtaga aacacccgga ttgcggtacg cgttagagcg
      421 attcaaagtg gtcttcactt gaagacgcga tccgtaatga agatttagtt ggcgatattc
      481 ctgctcgctc gtggcggttc gaaaagtcgc gagcagtgca accacacccg acgtctttcc
      541 ctcggtcccg ccagcaacaa gactctcaac acgcaacgta aggtgaagac gatcgcgagc
      601 aaactcgggt ggactgtcca agactccagt gagcaacact tgtttttgag gatcgatcat
      661 tccctcatca agaaatcgct tcacgctgtc agtaggagta gtccgctgct caataatggc
      721 gagcaataat ccggcaaaga acatcgcgga tagaatcgtt aggccggctg ccttcaactt
      781 tcgccgggca aataaagcca gcgcaccgac cgagcaaact gcgcaggcgt tgattggcag
      841 cagtagcttt atcgttatgc tatgtgaaac gactacgccg gccagataag ccgaagccaa
      901 ttgggtgagc ggatagagac taaaaagtct tgagtgagga ttcttcttca tagctgttgt
      961 gagtgtgaca gctaacgacc gatttcaaat tgcttaaatc atactaagtc ttactaacca
     1021 ccaggacaac aaaacttccg ggcttcattg tgcgcgtcgg ccgacgacct ggttcggtag
     1081 ccggcgtctc ggtgtactcg gcagctggca gatagatatt ctttgttttc ggatcaaaag
     1141 ccatcgtccg cgcgcttggt tgtgtcttaa gggctcccgc atcttcataa atgtccgccg
     1201 acttctcgtg aaagatgctg agtgtgccat cggagcagga aaagaagatc agcttcgcgt
     1261 ttggatcaaa gccgccataa tca
//
LOCUS       DATCGC010001762         1232 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_422998, whole genome shotgun sequence.
ACCESSION   DATCGC010001762 DATCGC010000000
VERSION     DATCGC010001762.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1232)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1232)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1232
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_422998"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1232)
                     /locus_tag="VIJ87_16840"
     CDS             complement(<1..>1232)
                     /locus_tag="VIJ87_16840"
                     /inference="COORDINATES: protein motif:HMM:NF021126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YfhO family protein"
                     /protein_id="HEY5446097.1"
                     /translation="GQMKLWGELTDANATLRGNSRELDILNTRYLISRREQANDFPTA
                     SVSAESPGPDSTFAPATEKYGDYLFGANDLSLPTITNGKRLTIKVPPTDADHVALITN
                     LTFAEDIPNNTVVAHLHLRAKGGKDFDFPLRAGVETADWAFDRPDIRARIKHKRAVIA
                     TSYDVSDAQHKYKGHTYVASFVLPEKATIESGYVELDPQSNASGFTFRVFRVSLVDGD
                     KSYPLSQQMIEAGSQSSQSAEKDERWTLVAEGEKVRIFENARALPRAWLASEARVLDE
                     NAMLRVIRSGVFPDGSKWDPLHTALVSAPLTGSLTNVQHNSEEQGKVDITKYEPNRVE
                     LSSQATANSMLVLSENDYPGWRAYIDGQSVEVLRVNYALRGVLVPAGTHQISFVYRPW
                     SVIGGLLISLLTAVGLAV"
BASE COUNT          295 a          349 c          291 g          297 t
ORIGIN      
        1 aactgccagc ccaactgcag tcagcaacga aatcaacaac ccgccgatta cagaccaggg
       61 acgatacaca aaactgatct gatgcgttcc cgccgggacc aacacaccgc gcaacgcata
      121 gttcacgcgc agcacttcca ccgactggcc atcaatgtag gcgcgccaac ccggataatc
      181 attttcactc aacaccagca tcgaattcgc agttgcttgc gaagaaagct cgactcggtt
      241 gggttcgtac ttcgtgatgt caaccttgcc ctgctcttct gaattgtgtt gtacattcgt
      301 caatgaacct gtcagcggag ccgacaccaa cgcggtatgc aatggatccc acttcgatcc
      361 atccggaaat acacccgaac gaatcacacg caacattgca ttctcatcca gcacccgcgc
      421 ttccgaagct agccaagcgc gcggcagggc gcgagcattt tcgaaaattc ttactttctc
      481 gccctccgca accagcgtcc agcgctcatc tttctcagca gactgcgaac tctgtgaacc
      541 agcttcgatc atctgttggc taagtggata tgacttgtct ccatcaacca gtgaaactcg
      601 aaagactctg aaggtgaacc ctgaggcatt tgactgagga tcaagctcaa cataaccact
      661 ctcaatcgta gccttttcag gcagcacaaa agaggcgacg taggtgtgtc ctttgtactt
      721 gtgttgggcg tcgctgacgt cgtaactcgt ggctataacc gcgcgcttgt gtttgattcg
      781 tgcccgaatg tccgggcgat caaaagccca atccgcagtc tcgacgccgg ctcgcaaagg
      841 aaagtcaaaa tcctttccgc cctttgctcg taagtgcagg tgggcaacta ctgtgttgtt
      901 tggtatgtct tcagcaaatg tcagattcgt tatcagcgca acgtggtccg cgtccgttgg
      961 cggcactttg attgttagcc gctttccgtt tgtaatagtt ggcaatgaaa ggtcatttgc
     1021 cccaaacaag tagtcgccgt acttctcggt tgccggcgcg aaagtggaat cgggtccagg
     1081 actttctgca gaaactgaag cggttggaaa atcgttagct tgttcacgtc gcgaaataag
     1141 ataacgagtg ttcagtatgt ctagctcccg actattgcct cgcagtgtgg cattcgcgtc
     1201 agtcaattct ccccaaagtt tcatctgacc cg
//
LOCUS       DATCGC010001763         1135 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_125624, whole genome shotgun sequence.
ACCESSION   DATCGC010001763 DATCGC010000000
VERSION     DATCGC010001763.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1135)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1135)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1135
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125624"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            135..992
                     /locus_tag="VIJ87_16845"
     CDS             135..992
                     /locus_tag="VIJ87_16845"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEY5446098.1"
                     /translation="MPNFPLTRRQFLSGLAATPLVAVSAASAYARLIEPYNYLVSETD
                     VFINNLPERFEGFRITQLTDIHHSKILGLNEVRRVVSLAQQTRPDMFVLTGDYSTTYR
                     RFIEPCAEALSSLSAPEGVWAVLGNHDHYTDPELTTRALEQHHISVLNNKNTTLRRGP
                     DKLQLSGIDDWTWNATDWIKAFSGLNDKAPTILLSHQPSVLDFEQVKNVSLILSGHTH
                     GGQINLPWLGTPARFATKDLRYAQGLFKHGDVQLYVSSGTGVIGLPVRFGVRPEIAVI
                     QLRRQAQVS"
BASE COUNT          281 a          312 c          269 g          273 t
ORIGIN      
        1 tattagcagt acgcgagaag cttggtgcag tagcccgact gtcaaggagg gcttgtctcg
       61 tgtgtctggt gaggcgaaac cctccttgac agtcgggcta ctgcaccgga ctctgacgtt
      121 atagaatcac tgtgatgcca aactttccac ttacacgtcg acaatttctc agtggattag
      181 ctgccactcc tctagtcgca gtttcagcag cctcagccta cgcccgcttg atcgaaccct
      241 acaattacct ggtctccgaa acggacgtct tcataaacaa cttgcccgaa cgttttgaag
      301 gctttcgcat aacccaatta acagatattc accacagcaa gatcctcgga ctcaatgaag
      361 tgcgacgcgt cgttagcctg gcccaacaaa ccaggcctga catgtttgtg ctcaccggag
      421 actattcgac tacttatcga cgattcattg agccctgcgc tgaagcgctc tcatcactga
      481 gtgccccaga aggagtttgg gctgtcctcg gaaatcacga tcactacacg gacccggaac
      541 tcacaactcg agcactcgag cagcaccaca tctctgtctt gaataataag aacacgacac
      601 tacgtcgcgg tcctgacaag ttgcagttgt ctggaattga tgactggacg tggaacgcca
      661 ccgactggat taaagctttt tctggtttga acgataaggc ccctacgatt ctgttatcgc
      721 atcaaccttc agtgttggac ttcgaacaag tgaagaatgt ttcactcatt ctaagcggcc
      781 acactcacgg tggtcagatc aacctgccat ggcttggcac gcccgctcgg tttgcaacca
      841 aagacctcag gtatgcacaa gggttgttca agcatggcga cgtccaactc tacgtctcga
      901 gcgggactgg cgtaattgga cttccggtga gatttggagt caggcctgaa attgcagtta
      961 ttcaactgag acgacaagcc caggtgagct aagcactcat gctggcagga cgcggagcct
     1021 tctgaagctg aaccggaagt tgagcgccac cgcaaatttt cacaaagcgg gctttgtctt
     1081 tctgcatctc ctgattgtta gccagcactt cacgaacttc acgaaaaatt cttgc
//
LOCUS       DATCGC010001764         1068 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_193219, whole genome shotgun sequence.
ACCESSION   DATCGC010001764 DATCGC010000000
VERSION     DATCGC010001764.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1068)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1068)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1068
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193219"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..210)
                     /locus_tag="VIJ87_16850"
     CDS             complement(<1..210)
                     /locus_tag="VIJ87_16850"
                     /inference="COORDINATES: protein motif:HMM:NF024949.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEY5446099.1"
                     /translation="MSNSPDYSRWSLEPYGIGTKLRALRTQKRLTLSRLSSETGLSTA
                     LLSKLETDRMVPTLPTLANICRVYGI"
     gene            373..>1068
                     /locus_tag="VIJ87_16855"
     CDS             373..>1068
                     /locus_tag="VIJ87_16855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446100.1"
                     /translation="MTLCFGLAAVSDLNRPASTQSRFSFLTLLALTAISLSGVQRVDA
                     QAKPAPDELVLSDGDTLHGKLVSSADGKIIFHTDSLGDVTLAWDKVKELHTNGKFAVL
                     DKNANVLEKKEAAQIPLGTVEMSNQSITVHPANAPAIAPMPVGNAQYIVDEAALNQQL
                     HHRPGFFAGWNGAATAGGSLVAATQNQYTFSGGLGIVRIVPTVTWLRPKNRTSAAFTG
                     SFGKITEPAYTIPA"
BASE COUNT          266 a          295 c          279 g          228 t
ORIGIN      
        1 aatgccgtat acgcggcaga tattggcgag tgttggaagc gtggggacca tccggtccgt
       61 ttccagtttc gacaacaatg cagtcgagag gcctgtttct gacgagagac gcgacaaagt
      121 taatcgcttc tgggttcgca gtgctctaag cttcgtgcca atgccgtagg gttcaagaga
      181 ccatcgggaa taatcaggcg aatttgacat tacaatcacc tcgccagata gtctgcccgc
      241 gaaatatcct ccaacttctg aaggatttct gaatgttgca ggtggcacag ttgggcatcc
      301 cgatttagca tctcaaaaag agacagagcg ccttgcctgg cccttcaatc tcactgaaaa
      361 ggatcatccc ccatgaccct gtgtttcggc ttagccgcag tttcagatct caatcgcccc
      421 gcatcgacac aatcaagatt ctccttcctc accctcctag ccttgacagc cattagtctc
      481 tccggtgttc aacgagtcga tgcgcaggcc aaacccgctc ccgacgagtt agtactcagc
      541 gatggagaca cgctgcacgg caaactcgtg agttccgcgg atgggaagat catctttcac
      601 accgattcgc tcggcgatgt aactctggcc tgggacaagg tcaaagagtt gcacacgaat
      661 ggaaaattcg cagtgctcga caagaatgcg aatgttctag agaagaagga agcagcgcag
      721 atccccctcg gaactgtgga gatgtcaaac caatctatta cagtgcaccc agccaacgct
      781 ccagcgatcg cgccaatgcc cgtgggcaac gcacaataca tcgtggatga agcggccttg
      841 aaccagcagt tgcaccacag gccgggcttc ttcgccggat ggaatggggc cgcaacggcg
      901 ggaggcagcc tggtggccgc aacacaaaat cagtacacgt tctcaggagg tttaggcatt
      961 gttcgaatcg tcccaacagt gacttggctg agaccgaaaa atcgcacgtc tgctgctttc
     1021 acgggatcgt ttgggaagat cacggagcct gcgtatacga tcccagct
//
LOCUS       DATCGC010001765         1502 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_125628, whole genome shotgun sequence.
ACCESSION   DATCGC010001765 DATCGC010000000
VERSION     DATCGC010001765.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1502
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125628"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..295
                     /locus_tag="VIJ87_16860"
     CDS             <1..295
                     /locus_tag="VIJ87_16860"
                     /inference="COORDINATES: protein motif:HMM:NF028171.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carbamoyltransferase C-terminal
                     domain-containing protein"
                     /protein_id="HEY5446101.1"
                     /translation="SITHIDYSARIQSVDKDVNPRYWRLIHGFKKLTGYGVIVNTSFN
                     VRGEPMVCSPEDAYRCFMRTEMDYLVMGNYMLDKRDQPKFTEEADWKTEFKLD"
     gene            378..>1502
                     /gene="carA"
                     /locus_tag="VIJ87_16865"
     CDS             378..>1502
                     /gene="carA"
                     /locus_tag="VIJ87_16865"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: protein motif:HMM:NF009475.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005951 - carbamoyl-phosphate synthase
                     complex [Evidence IEA];
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HEY5446102.1"
                     /translation="MNHSTIHNSSSLGPRAEISKAELLLQDGSRFSGERFGSRCSTAG
                     EVVFNTGMVGYPEAMTDPSYRGQILVLTYPLIGNYGVPVNAETKPSANDLDIPEFFES
                     NRIQISGLIIATLSKHYSHWSALDSLDLWMQRQNIPGICNIDTRMLTKKLRSQGMMLG
                     KIVVDDVDLDWEDPNERNLVAEASVERPRFYPGSGQKKVILVDFGCKDSILRHLVNKR
                     LDVLRVPWNYDWSEEIVDGVVLSNGPGDPKMCVDALKILRKGLRRDIPILGICLGHQL
                     LALAAGADTFKLKYGHRSQNQPCIQVGTKRCFITSQNHGFAVNEKTLPLEWKPWFFNA
                     NDGTNEGMRHREQPIFSVQFHPEANPGPTEASFVFDSFLDA"
BASE COUNT          391 a          363 c          395 g          353 t
ORIGIN      
        1 atcaattacg cacattgatt actcggctcg aattcaaagc gtcgacaaag acgttaatcc
       61 ccgatactgg cggcttattc atggattcaa gaagttgacc ggatacggag tgatagttaa
      121 cacgagtttc aacgtccgag gtgaaccgat ggtatgcagt cccgaagacg cttatcggtg
      181 cttcatgcgg accgaaatgg attacctcgt aatgggtaac tacatgttag ataaacggga
      241 ccagccgaaa tttaccgaag aggctgattg gaaaactgag tttaagctcg actaacgctc
      301 gcaggaccac ccagcctttg agccggatcg ccattctttg ccggtgtttc gttcggcact
      361 tttaggacat tctgccagtg aaccacagca caatccacaa tagctcctct ttaggtccgc
      421 gagccgagat atcgaaagcg gaattgttgc tgcaagatgg cagtcgcttc tccggcgaac
      481 gcttcgggtc acgctgctcg acagcgggcg aggttgtatt caatacgggg atggtcggtt
      541 atcccgaagc catgaccgat ccttcctacc ggggtcaaat tctggtgctg acatatcctt
      601 taatcggaaa ctacggagtt ccggtcaacg cagaaacaaa gcccagcgca aatgacctcg
      661 acatccctga gttctttgaa agcaaccgaa ttcaaatcag tgggctcatt attgccacgc
      721 tttcgaagca ctacagccac tggtcggcgc tggattcctt agatttatgg atgcagcgcc
      781 aaaacatccc gggcatatgt aacatcgaca cccgcatgtt aacgaagaag ctaaggagcc
      841 agggaatgat gctgggaaag atcgtggttg acgatgtgga cctcgactgg gaggacccta
      901 acgagcggaa ccttgtcgca gaggcaagtg tggagagacc cagattttat ccaggatccg
      961 gacagaagaa agtcattcta gtcgattttg gatgcaagga cagcatcctc cgtcatttgg
     1021 tcaataagcg gctggatgtt ttgagggtgc cttggaatta cgactggtcc gaagagatag
     1081 ttgacggagt tgttctttct aacggacccg gagatcccaa aatgtgcgtc gatgctttaa
     1141 agatccttcg caaggggcta agaagagata ttcccatcct tggaatctgt ctcggacatc
     1201 aactgctggc gctggctgcc ggcgccgata cgttcaagtt aaagtacggg catcgcagcc
     1261 agaaccaacc ctgcattcaa gtgggaacca agcgttgctt cataacgtcg cagaaccatg
     1321 gtttcgctgt aaacgagaaa acgttgcctc tggaatggaa accatggttc tttaatgcga
     1381 acgatggcac caacgaggga atgcggcatc gagagcagcc gatcttttct gtgcaatttc
     1441 atccggaagc gaatccggga cctacagagg cgtcgtttgt ctttgattca tttctagatg
     1501 cg
//
LOCUS       DATCGC010001766         1396 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_423021, whole genome shotgun sequence.
ACCESSION   DATCGC010001766 DATCGC010000000
VERSION     DATCGC010001766.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1396)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1396)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1396
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423021"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..307)
                     /locus_tag="VIJ87_16870"
     CDS             complement(<1..307)
                     /locus_tag="VIJ87_16870"
                     /inference="COORDINATES: protein motif:HMM:NF019911.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEGA domain-containing protein"
                     /protein_id="HEY5446103.1"
                     /translation="MSKTRFFAKYFRLAFAGLLGLAFIAAQPSTTVHAKPKKAKYGTI
                     KILTAPAGLPLSIDGKSYGETTRDYRGIDLDPGLHSVVVTLPNGQRWSREIDLPAGRI
                     "
     gene            complement(312..842)
                     /locus_tag="VIJ87_16875"
     CDS             complement(312..842)
                     /locus_tag="VIJ87_16875"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEY5446104.1"
                     /translation="MRNRAFRSLAAIFGILLLTGIPAQAGPIVVSEVIQVMSNYQNPS
                     EIRLRGVSQGSMPLASGVSGVDVIEQGDVEGTVCDCGEILVPGGFPKWPLLFLAAIPL
                     FFNHDCDDCDLPPSKPTPTPPGQINPEVIPNTTPVPEPASLLLFGTGLVAFGGALRRR
                     YAKGKVAAQIQSTEEE"
     gene            complement(1091..>1396)
                     /locus_tag="VIJ87_16880"
     CDS             complement(1091..>1396)
                     /locus_tag="VIJ87_16880"
                     /inference="COORDINATES: protein motif:HMM:NF012784.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S1 RNA-binding domain-containing protein"
                     /protein_id="HEY5446105.1"
                     /translation="AVNRIRGLTAEAEVGQTYLGTVSRIVDFGAFVEIFPGTDGLLHI
                     SEIADRRVKDVRDELKEGQQILVKCIGREGNKIKLSRKAVLRDENRNAEAASASDSE"
BASE COUNT          356 a          350 c          339 g          351 t
ORIGIN      
        1 tgatacggcc agccggtaag tcaatctcac gggaccagcg ctgaccattg ggcagcgtaa
       61 ccacaaccga gtgcagtcct ggatcaagat caattccacg ataatctctt gtagtttcac
      121 cgtacgactt accatcaata ctaagaggca gaccagccgg tgcggttaga atcttgattg
      181 tgccgtactt ggcttttttg ggtttcgcgt gaactgtcgt cgaaggctgc gctgcgataa
      241 aagctagccc cagcaatcca gcaaacgcaa gcctgaaata ttttgcgaag aatctggttt
      301 tcgacattgg cttattcctc ctccgtcgat tgaatctgcg cagctacttt tccttttgca
      361 taacgtctgc gcaaggctcc accgaatgcc accagacctg taccaaagag aaggagggat
      421 gctggttcgg gaacgggggt ggtatttgga ataacttctg gattaatttg tccgggcgga
      481 gtaggagttg gtttagatgg tggcagatcg cagtcatcgc aatcgtgatt gaaaaacaag
      541 ggaatggctg cgaggaatag gagcggccac tttggaaagc cccctggaac taaaatctcg
      601 ccgcaatcgc aaacggttcc ttcaacatcg ccctgctcaa ttacgtcaac tccactaact
      661 ccggaagcga gtggcattga accctgtgaa acaccgcgca atcgaatctc agatggattc
      721 tgatagttgc tcatcacctg aatgacctcg ctgaccacta ttggtccagc ttgagccgga
      781 atgccggtca ataacaggat gccgaatatc gcagcaaggg aacggaaagc tcgattcctc
      841 atcgtgtgga atctccttct agtgacttcc caacttggga aaagttttcc tggtcttaat
      901 tagcgaggtc catcaaccgt tacatggcaa gaagaggctt cgctcgtgat agtaaggaag
      961 atgttgaatg aggctgtgat tccaacttct gcgggtcttg aggagtcgaa ctcaaataga
     1021 aaaagaggtt tgccgaaatg gcaaacctct ttcgcttagt tctaatactt tgactgcgcc
     1081 tgactctctc ttactcggag tcactcgcgc tggcagcttc agcattgcga ttttcatctc
     1141 gcaaaactgc tttgcgggag agcttgattt tgttgccctc gcggccaatg cacttaacaa
     1201 gaatctgttg accttccttc aattcgtcac gaacatcttt aacgcggcgg tctgcaattt
     1261 cagaaatgtg caatagacca tcagttccag gaaatatctc gacaaacgct ccaaagtcta
     1321 cgatcctgga aacagtacca agataggttt ggcccacttc cgcttcagcc gtcagtcccc
     1381 gaatgcggtt aacagc
//
LOCUS       DATCGC010001767         1229 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_291508, whole genome shotgun sequence.
ACCESSION   DATCGC010001767 DATCGC010000000
VERSION     DATCGC010001767.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1229)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1229
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291508"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..395)
                     /locus_tag="VIJ87_16885"
     CDS             complement(<1..395)
                     /locus_tag="VIJ87_16885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3999 family protein"
                     /protein_id="HEY5446106.1"
                     /translation="MKKVRRPLFLISALLIVSAVVVAQTQLSSWPFYVEVSSTPSAGV
                     YQFTVPLHVMGQSRDDLGDLRLFDGENHEIPYAIRVRQGVNEQQEFAAQVFNRATIGA
                     SASEVTLDLGEYNREHNEVEIQTSGENFRR"
     gene            complement(392..>1229)
                     /locus_tag="VIJ87_16890"
     CDS             complement(392..>1229)
                     /locus_tag="VIJ87_16890"
                     /inference="COORDINATES: protein motif:HMM:NF021606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2339 domain-containing protein"
                     /protein_id="HEY5446107.1"
                     /translation="PSYHDWMGVFAIVMALLYAGVAKLLLDRATLRRAESLTLIGVAL
                     TFVTIAIPIQLRSNWITIAWAIEGLMMLWTGIETSSKRLRITACTLFGLALIKLLIWD
                     SPYGNRGAFIPVFNRYFLSSLFVIGCLFGAAAVYQRLGKRKNISAKGVTLTFVLVAVV
                     AFWLVSSVETHTFFTARALAQRLPEDFRHQRWLGQMALSVVWASYAAVLAAIGFLRRS
                     STTRWAALLLFALTIIKAMFIDIAQLQQLYRIIVFFVLGVLLLLVAWGYHKAYQARES
                     SS"
BASE COUNT          343 a          318 c          312 g          256 t
ORIGIN      
        1 cgcctgaagt tttccccgga agtttgaatc tcaacctcat tgtgttcgcg gttgtactcg
       61 cctaaatcaa gagtgacctc gctcgcagaa gctccgatag tcgcgcgatt gaaaacttga
      121 gcagcaaact cctgctgttc gtttactcct tgtctgacac gaatcgcgta agggatctca
      181 tgattctcac cgtcgaagag acgcaggtca ccaaggtcat cacgggattg ccccatcacg
      241 tgtagcggca ctgtgaactg gtaaacaccg gcagatggcg tggaactaac ttcgacgtag
      301 aacggccacg acgacagttg agtttgcgca accacgactg ccgagacaat tagaagtgca
      361 ctaataagaa aaagcggacg acgtaccttc ttcatgatga cgactccctc gcctggtaag
      421 ccttgtgata accccaggcc accagcaaca aaagtacacc caggacaaag aaaacaatga
      481 tgcgatagag ctgttgcagt tgagcgatat cgatgaacat cgctttgatg attgttagtg
      541 caaatagtaa aagcgccgcc caacgtgtgg ttgatgagcg tcgcaaaaac ccgatggcgg
      601 caagcactgc ggcgtatgaa gcccacacaa ctgaaagcgc catctggccc aaccaacgtt
      661 ggtgtcgaaa gtcttctggc agtctttgag caagggctct cgcggtgaag aaagtatgag
      721 tttcaactga cgacactaac cagaacgcca cgacagctac gaggacaaac gtcagtgtta
      781 ctcccttggc tgagatgttc ttgcgtttgc cgagtctttg ataaacggct gccgccccaa
      841 agaggcagcc tattacaaag agcgatgaaa ggaagtaacg attgaagacc ggaataaatg
      901 cgccacgatt gccataggga ctgtcccaaa tcaacagctt tattaaggcc agaccaaaca
      961 aagtacaggc cgtgatgcga agtcgtttac tgcttgtttc gattccggtc cacagcatca
     1021 tcaaaccttc gatagcccag gcgatcgtta tccagttcga acgcaattga attggaatgg
     1081 caatcgttac gaacgtgagg gcgacgccga tcagtgttag cgactcggcg cgtctcaacg
     1141 tggcgcggtc aaggagaagt ttcgcaactc ccgcgtacag cagagccatc acaatcgcga
     1201 agacacccat ccagtcgtga taggacgga
//
LOCUS       DATCGC010001768         1137 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_93100, whole genome shotgun sequence.
ACCESSION   DATCGC010001768 DATCGC010000000
VERSION     DATCGC010001768.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1137)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1137)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1137
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93100"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..236)
                     /locus_tag="VIJ87_16895"
     CDS             complement(<1..236)
                     /locus_tag="VIJ87_16895"
                     /inference="COORDINATES: protein motif:HMM:TIGR04519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TAT-variant-translocated molybdopterin
                     oxidoreductase"
                     /protein_id="HEY5446108.1"
                     /translation="MSDSDRHINFKLMRDHILAMQDGKDSRAGKQYWRSLEELADSPA
                     FQEFVAREYPQQAEEWHDPIERRTFIKLMGASLAL"
     gene            complement(253..921)
                     /locus_tag="VIJ87_16900"
     CDS             complement(253..921)
                     /locus_tag="VIJ87_16900"
                     /inference="COORDINATES: protein motif:HMM:NF025875.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c3 family protein"
                     /protein_id="HEY5446109.1"
                     /translation="MPQIFHHSTNALAKITIYGAIFVVGAALFATVQLNRSSWNTGQW
                     LERQQPVQFSHKHHVGDDGIDCRYCHTSVETSASAGIPSTTTCMNCHKQIWADSPYLE
                     PVRASFRTGKPIEWIRVHDLPDYAYFNHSIHVNKGVGCSTCHGRVDEMPIAYQSSSLQ
                     MEWCLECHRNPERFVREKGKVFDMNWRPENKSATEIEYGRSLLVKYRIQGKQVLTSCS
                     TCHR"
BASE COUNT          268 a          293 c          282 g          294 t
ORIGIN      
        1 agggcgagcg acgctcccat taacttgatg aacgtccgac gctcgatcgg gtcgtgccat
       61 tcctcggcct gttgcggata ctctcgcgca acaaattcct ggaacgctgg actgtctgcg
      121 agttcctcga gactgcgcca gtattgtttt ccggcgcgac tatccttgcc atcctgcatt
      181 gccaggatgt ggtcccgcat cagtttgaaa ttaatatgac ggtcgctgtc gctcatttcc
      241 aacttctatt ctttatcggt gacaagtgga acaactcgtc aacacttgct tgccctgaat
      301 tctgtatttg acgagcaggg atcttccata ttcaatttca gtcgcactct tattttcggg
      361 tcgccagttc atgtcgaaga cttttccctt ctcacgaaca aacctttccg gatttcggtg
      421 acactccaaa caccactcca tctgcaacga tgaagactga taagcgattg gcatttcgtc
      481 gactctgccg tggcacgtcg agcagccaac tcccttgttt acgtgaatgc tgtgattgaa
      541 gtaagcgtag tcaggaaggt cgtgcacacg aatccattcg atcggtttgc cggtgcgaaa
      601 actcgcacgt accggctcca gataagggct gtcggcccaa atctgcttat gacaattcat
      661 acacgttgtt gttgatggta ttccggcgga agctgacgtt tccactgagg tatgacaata
      721 acggcagtcg atgccgtcgt cgccgacgtg gtgtttgtga ctgaattgga ccggttgttg
      781 acgttcgagc cactgtccgg tgttccacga cgagcggttg agttggacag tagcaaacaa
      841 cgccgcgcca acaacgaata tcgcgccgta aatggtgatc ttagctagag cgttggtact
      901 gtggtgaaat atctgtggca tcgccgcagg attaatcgtg gctctaatac tacgagcgaa
      961 ggtcaaacta cagatacggg gctaagacaa aaccatccgt tcgggcacgc ctgcgaagta
     1021 gaccagcaga cacgacggcc cgcgcaaaat ccgttgaact aaatcttgtt tattgcaaag
     1081 tgcgggtact ttaccaaata cgagacgatt ttcaaattgc gcaactattc acaatgt
//
LOCUS       DATCGC010001769         1407 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_390133, whole genome shotgun sequence.
ACCESSION   DATCGC010001769 DATCGC010000000
VERSION     DATCGC010001769.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1407)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1407)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1407
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_390133"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            115..636
                     /locus_tag="VIJ87_16905"
     CDS             115..636
                     /locus_tag="VIJ87_16905"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY5446110.1"
                     /translation="MSNRIKWTERKFDFTFPTGIYPEIIERLRGTPVRLEEHCRAVST
                     ANLTAQVDGRWSMQENAGHLLDLESLVQQRLDEYLASANALHAADMSNRKTYDANHND
                     VNVETILSNFRQQRTITVNWLDNFDPEVFARVALHPRLNVHMRLVDMLFFQAEHDDYH
                     LTRIGELRRSFSG"
     gene            665..>1407
                     /locus_tag="VIJ87_16910"
     CDS             665..>1407
                     /locus_tag="VIJ87_16910"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY5446111.1"
                     /translation="MKIIALTFVFLSLITGLGAQARRSLGPTIIDGVNASDDVVSQAT
                     MDWLLSTYKMLHAAPELSHHEEKTSAFFAGELRKFGYSVTERIGKYERPEWTGYGVVA
                     VLKNGAGPTVLIRTELDALPVDEKTGVAYASKVKTKNDAGVEVSVMHACGHDIHMTSM
                     LGTAKMLADLKSQWHGTLVILGQPAEETIDGARAVLRDGLYEKIPKPDFAIALHDNAE
                     LETGKVGYTSGYAMASGTAVDIKIRGLGG"
BASE COUNT          353 a          384 c          372 g          298 t
ORIGIN      
        1 cgaaatcttt ggagtgcggt ggcccggcac cgctttggta aaacataagg ccggaactaa
       61 cttaccaaag cggtgccggg ccaccgcact ccaaagtcct gatcactctt ccttatgagc
      121 aatcgcatta aatggaccga gcgaaagttt gacttcactt tcccgaccgg aatctatccg
      181 gaaatcatcg aacgcctgcg cggtactccg gttcgattgg aagaacactg tcgcgccgtg
      241 tcgactgcaa acttaactgc tcaagtcgat ggccgctggt cgatgcagga aaacgccggg
      301 cacttgctcg accttgaaag tctggtgcaa caacgactcg atgaatatct tgcgagcgcg
      361 aacgcactcc acgccgccga tatgtcgaat cgaaagactt acgacgcaaa tcacaacgac
      421 gtcaatgtcg aaaccatcct cagcaacttt cgacagcagc gcaccataac cgttaactgg
      481 ctcgataact tcgacccgga agtttttgca cgcgtagcgc tacacccgcg actcaacgtt
      541 catatgcgtc tagttgacat gctcttcttt caagcagagc atgacgacta ccacctaacg
      601 cgcatcggcg aattgcggcg gtcgttctcc ggatgaagtc ctacctttac gtatggagcc
      661 tcgaatgaaa atcatcgcac ttacttttgt tttcctgtca ctcatcacgg gcctgggtgc
      721 ccaggctcgg cgaagtctcg gtccgaccat cattgacgga gtgaacgcgt ccgacgatgt
      781 ggtaagtcag gcaacaatgg attggttatt gtcgacttac aagatgctgc acgctgcccc
      841 ggaactgtcg catcatgaag aaaagacgtc cgctttcttc gcgggtgaat tgcgcaaatt
      901 cgggtactca gtcactgaac gcatcggcaa gtacgagcga cctgagtgga cgggctacgg
      961 cgtcgtcgct gtgctgaaga acggcgcggg tccaaccgta ttgatcagaa ccgaactcga
     1021 cgccttaccg gtcgacgaga aaaccggcgt cgcatatgcc agcaaagtca aaacaaagaa
     1081 tgacgccggt gtcgaagtca gtgttatgca tgcctgcgga cacgacatcc acatgaccag
     1141 catgctcggc accgcaaaga tgttggcgga tctcaagagt caatggcatg gaacgctggt
     1201 catcctgggc caacctgcgg aagagacgat cgatggagcg cgcgcggtgt tgcgtgatgg
     1261 actctacgaa aagattccaa aacccgactt tgcgattgct ttacacgaca acgccgaact
     1321 cgagacgggt aaggttggtt atacgtccgg gtatgcaatg gcaagcggta ctgccgttga
     1381 cataaagatt cgtggacttg gtggaca
//
LOCUS       DATCGC010001770         1139 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_423055, whole genome shotgun sequence.
ACCESSION   DATCGC010001770 DATCGC010000000
VERSION     DATCGC010001770.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1139)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1139)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1139
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423055"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            101..>1139
                     /locus_tag="VIJ87_16915"
     CDS             101..>1139
                     /locus_tag="VIJ87_16915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446112.1"
                     /translation="MSYSPEKLTPEYRQRRHRRNRLILLALGVIVAILLAIIASQQLW
                     LWTIVSPNTASDAMVLYALSALNFVAFVVFSFIFVRNILKLRREREERQLGSKIKTRL
                     LVYFISISFLPITAMAVFSYLFLNRSLEKWFYPFPEVVQQANDVRRQATEHQLRSLHD
                     TSSLLAMFLNKQSSEDRQATLDQTVASGQLAAIEIVSADGAVVLQSHAKLPEGDVSKL
                     ETLLGQARKAHAPTGDTFADGKDWDVVAVPLNESQTLIIAPQKSVETDLDNLIRESQQ
                     PYQDLVRKQRRVRLVGISTLGLMTLILFFVSSWVAIYLARGIATPIKALAEASKEIAR
                     GNLSHRVTTIAD"
BASE COUNT          269 a          288 c          288 g          294 t
ORIGIN      
        1 cggtcccaga agagcgcgtc ctttagtcca aaggcgtcac tgaaggtaga ctgaagggtg
       61 ccgatagaag ggctatgcta aacttcaatg aacgttccgc atgagttatt caccagaaaa
      121 actgactcct gagtaccggc agcgtcgtca tcgacggaat cgtcttatac tcctggcgct
      181 cggcgttatt gtcgcaattc tcctcgcgat aattgcatcg caacagctct ggttgtggac
      241 cattgtcagt ccgaacaccg cgtcggatgc gatggtgctc tacgcgctct cagctcttaa
      301 ctttgtagcc ttcgttgttt tttctttcat ctttgttcgg aacattctca agttgaggcg
      361 cgaacgtgaa gagcgccaac ttggttccaa gatcaagaca cgcctgctcg tctatttcat
      421 ctcgatcagc ttcttgccga tcacagcgat ggctgtgttc tcctatcttt ttctgaatcg
      481 ttcattggag aaatggttct atccgtttcc agaagttgtc caacaggcga atgatgtcag
      541 acgacaggcg acagaacatc aacttcgtag cttgcacgac acttcgtcat tgctggcgat
      601 gtttctcaac aagcaatcgt ctgaggatcg acaggctact ctcgatcaga cagtagcctc
      661 cggtcagctg gcagccatcg agatagtatc cgccgatggc gctgttgtac ttcaaagtca
      721 cgcgaaacta cctgaaggcg acgtctcaaa gttagaaaca cttcttggac aggcgcgaaa
      781 ggcgcacgcc ccaacgggtg acacttttgc agacggtaaa gactgggacg ttgttgctgt
      841 tcctctaaat gaatctcaga ctctgattat tgcgccacag aaaagcgtcg agaccgatct
      901 ggacaatcta atccgtgaat cacaacagcc gtaccaggat ttggttcgga aacagcgtcg
      961 ggtaagactg gtaggaatct caacgctggg attgatgact ctgattctgt tttttgtttc
     1021 gagttgggtg gcgatctatt tagcacgtgg aattgctacc ccgatcaagg ccctcgcgga
     1081 agcttcgaag gagatagcgc gcggcaactt gagtcatcgc gttacgacca ttgcggacg
//
LOCUS       DATCGC010001771         1795 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_491091, whole genome shotgun sequence.
ACCESSION   DATCGC010001771 DATCGC010000000
VERSION     DATCGC010001771.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1795)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1795)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1795
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_491091"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            609..998
                     /locus_tag="VIJ87_16920"
     CDS             609..998
                     /locus_tag="VIJ87_16920"
                     /inference="COORDINATES: protein motif:HMM:NF018437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0009254 - peptidoglycan turnover [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3D domain-containing protein"
                     /protein_id="HEY5446113.1"
                     /translation="MVSNDSSDPKGSAGEAAASVISEPSFEAPPTSYVATAYSLRGRT
                     ASGRPVSVGLIAADPRILPLGSRVKLEAGNYTGEYLVADTGGAVRGRHIDIWTPSARE
                     AMKFGKRVIKLTVLSYGGKRKAPKTTK"
     gene            1175..>1795
                     /locus_tag="VIJ87_16925"
     CDS             1175..>1795
                     /locus_tag="VIJ87_16925"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF017864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HEY5446114.1"
                     /translation="MSSHQAATERNRQIPIAEPLVEVRRGAITESRHRGHIAVVEPDE
                     RVVCYAGAPENVTFLRSSAKPFQALPLLVSGAADHFGFTDEEIALACASHNGESIHTK
                     IVAGMLEKIGLGPDALKCGVHEPYSQQAAADLRARGESANVLHNNCSGKHAGMLAVAK
                     HLSAPIETYDIAENPVQLAIGRVVAQFSGVALEDLSVGIDGCGVPVF"
BASE COUNT          440 a          465 c          453 g          437 t
ORIGIN      
        1 aagggacgac gcctgtttgg catccagttt caccctgaac tctttgacgc cgaccatcct
       61 caaggccagc agatagttga gaatttcctg cacttataat taggtcaatt tgcccacttt
      121 gaacggttct gtcgatgtga ctgtactggt ttttcctaag ttctcgtatt tcacaaatta
      181 cgcctaaacc tgcacttttc ctcacaaaat tcgacctttt ctacgttgga cacccctcga
      241 atctctatgg tacggtgcct gtgaaatcgc gagcctgatg ctcgcttttt tgctttagcc
      301 caatccagat cttttcagcg caccgcatca aggatgcaag cccccaacct cggctgacgt
      361 catagagact ccttagagcc aggggacgag tcataggaaa gaacggactc gcgcaggacg
      421 ctgaaaggta gatagaaaca tcggacagga gacccgaatt gaaagttacc tctatttttc
      481 gtggaagtgc ggttttgtgt atagcacttc tgagtagctc tttaatattt tccgccagta
      541 cgtcatcggc ggagcccctt actctccaaa ctcaacaaca gatcaaatcg aatgtcgaaa
      601 cgcctacggt ggtttcgaat gacagttctg acccaaaggg tagtgctgga gaagctgcgg
      661 cttcggtaat ctcggaacct tcctttgaag cgccaccgac ttcgtacgtt gcgactgcct
      721 acagcttgag aggacgcaca gcaagcggtc gtccagttag cgtcggattg atagctgctg
      781 atccacgtat tctgccgctc ggttcgcgag taaaactgga agcaggaaac tacactggtg
      841 agtatctagt ggccgatacc ggcggcgcag ttcgtgggcg tcacatcgac atctggactc
      901 ccagcgcgcg tgaagcaatg aagtttggaa aacgagttat taagttgacg gtgttgagct
      961 acggaggaaa acgtaaggca ccgaagacaa cgaagtagat tcacacgaaa accaggttag
     1021 agataaatac cacggaaccc caagaggtca cgtggtattt tcatttgtag ccattctcat
     1081 ttccgatcag ctagagaacc agctttccaa tggttacatg ttaagattcc tttaccgcat
     1141 ttattaatct cttaatcgag gttgtgggct ctcaatgtct tcgcatcagg ctgccaccga
     1201 acgcaatcga caaattccca tcgccgaacc gcttgtcgaa gtgcgacgag gcgcaatcac
     1261 ggaatcacgt caccgcggac acatcgccgt agtcgaacct gacgagcgcg tggtgtgcta
     1321 tgcaggcgcg cctgagaacg tgacgttcct acgttcgtcc gcaaagccgt ttcaagcttt
     1381 gcctttactc gtttccggcg ccgcggatca cttcgggttt actgacgagg agatcgcact
     1441 tgcctgtgct tctcataacg gcgagtcgat tcataccaaa atcgttgccg ggatgttgga
     1501 gaaaataggc ctcggtccgg acgcattgaa gtgtggagtg cacgaaccat atagccagca
     1561 ggccgcggct gatttgcgag ccaggggtga atcggcaaac gtcttgcaca acaactgctc
     1621 cggcaaacac gccggcatgc tcgcagtagc aaaacatcta agcgcaccaa tcgaaactta
     1681 cgacattgca gagaaccctg tgcagttagc gatcggccgc gttgtcgcac agttttcagg
     1741 tgtagcgctt gaagatcttt cggtaggaat cgacggttgt ggcgtccctg tgttt
//
LOCUS       DATCGC010001772         1075 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_291575, whole genome shotgun sequence.
ACCESSION   DATCGC010001772 DATCGC010000000
VERSION     DATCGC010001772.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1075)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1075
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291575"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(60..>1075)
                     /locus_tag="VIJ87_16930"
     CDS             complement(60..>1075)
                     /locus_tag="VIJ87_16930"
                     /inference="COORDINATES: protein motif:HMM:NF013237.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEY5446115.1"
                     /translation="SLLEEQLASLEDATYASAFASGMAAITALTRIVRSGEEIIAGDD
                     LYGGTVRLLERIASTQGVTVRYVDTTDLDLVRSNLTSSTRLILIETPSNPLFRITDIR
                     ALSLIARDAGALLAVDNSMLSPVFQRPLNLGADIVIHSATKFLCGHSDVTAGAIITND
                     RSVHESISFQQNAEGAGLSPFESWLLLRGLKTLALRVERQNKSAHRVAEFLESHSSVA
                     RVFYPGLVSNEGHKIHRQQSEGDGAVVSFTTDDPDFSVRLVEATRLFKIAVSFGSVGS
                     TISLPCRMSHASIPLALRDRIGPPADLVRLSVGIEDVDDLIDDLSRALVVSESKDLEL
                     AVG"
BASE COUNT          290 a          316 c          229 g          240 t
ORIGIN      
        1 attgcaccac agagacacag agggctcaga ggtagcacag agaaattcat tccaaggcac
       61 taccctactg ctaactcgag atctttactt tcactcacaa ccaacgctcg acttaagtcg
      121 tcaatcagat catcaacatc ctcaattccc accgacaacc tcaccagatc cgctggtggc
      181 ccaattctat ctctgagcgc caatggaata ctggcatgcg acattcgaca tggtaggcta
      241 attgtcgagc cgactgaacc aaaactcaca gcgatcttga agagtcgtgt tgcttcaacc
      301 aaacgcaccg aaaaatccgg atcgtcggtc gtaaaactca caaccgcacc atcgccctca
      361 gactgctgcc gatgaatttt atgaccttcg ttactgacca gtccgggata gaacactctc
      421 gctacagaag aatgcgattc cagaaactca gccactcgat gcgccgactt gttttgtcgc
      481 tcaactctta acgcgagggt cttcaaacct cgaagcagta gccacgattc aaacggactc
      541 aatcccgctc cttcagcgtt ttgctgaaac gagatcgact cgtgaaccga tctatcgttc
      601 gtgataattg cacctgcagt aacatcgcta tgaccgcaca aaaacttcgt cgctgaatga
      661 atgacgatgt cagcccccaa gttcaatggg cgttgaaaga ctggcgagag catcgagttg
      721 tccacagcca acagtgcacc cgcatcacga gcaatcaaac ttagggccct gatatccgta
      781 atgcgaaaca aaggattgct cggcgtctcg ataagaatca aacgcgtact tgaggttagg
      841 ttacttcgaa ccagatcaag atccgttgtg tcgacatatc ggaccgttac accttgtgtg
      901 ctggctattc gttccaacag gcgcactgtg ccgccgtaca ggtcgtcgcc tgcgattatc
      961 tcctcaccac tccgaactat tcgcgtcaac gccgtaatcg cagccatacc gctcgcaaac
     1021 gcagaggcgt acgttgcgtc ttccaaactc gccaattgtt cctcgagtag cgaac
//
LOCUS       DATCGC010001773         3372 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_224828, whole genome shotgun sequence.
ACCESSION   DATCGC010001773 DATCGC010000000
VERSION     DATCGC010001773.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3372)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3372)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3372
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224828"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..552
                     /locus_tag="VIJ87_16935"
     CDS             <1..552
                     /locus_tag="VIJ87_16935"
                     /inference="COORDINATES: protein motif:HMM:TIGR03370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VPLPA-CTERM sorting domain-containing protein"
                     /protein_id="HEY5446116.1"
                     /translation="STEAYFSTNVPGGANPGSDTVGIGYDGTFLRNYLIASGDPTLTF
                     SIGVDVNDTNSAQTLDAFYLLNLTTHVVLAAFTTPTVVPSQNNGTGFPDYTLGTFNIT
                     LGSDIHIGDQLIFFARITNANDGPDSFFLIPTQQANETPLPAAVWLFGGGLGVLGLLA
                     RRRKRTRGAWDDLPRVDFLPKVA"
     gene            746..1663
                     /locus_tag="VIJ87_16940"
     CDS             746..1663
                     /locus_tag="VIJ87_16940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446117.1"
                     /translation="MTSPHDAVVERHLKLPDQFNPHSSVAVLNQLAERIVFTDDVPSL
                     LYDMHDNRQLTYEGMLTSVKLPFDCFWIEYRSVLGIGDVYEAKRAEYGALVTRMPNSR
                     VRMYIVIGTDFVDLGTISSLAYVVEFEHWPPVMMPMLSKSLNSKALQFYINYAYNRDK
                     IESKDEDATNIIGGIVTELIFGIFLVTQPKVYNDEKIEWHSKKQGARAKHGKPPLLEY
                     RRIRLRITKPVKRYNSQPTARTRGIQCIDNEHDTESSDAINHRRYHKVMGHFRHYLRH
                     DPAYTVWIEPHYRGDPALGITFTERDVTK"
     gene            1660..2004
                     /locus_tag="VIJ87_16945"
     CDS             1660..2004
                     /locus_tag="VIJ87_16945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446118.1"
                     /translation="MTNTQAPTQAQIEAAAQAIFKQRFGRDWTQWDCKADAEAALTAA
                     AQVGTFEAGPDECDTGVALTKAIDAVLAEDTPLVNHTIERCAQVADSFHAYDRPADEI
                     AAAIRKLKEVDT"
     gene            2188..2421
                     /locus_tag="VIJ87_16950"
     CDS             2188..2421
                     /locus_tag="VIJ87_16950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446119.1"
                     /translation="MADRENIWLQPGTRVHMLVYKDGKWQVWTSTNTRSGDSDLWCGT
                     YMELHPNGMCIQCTRTEAYVNNIVVRPATGDAT"
     gene            2418..2831
                     /locus_tag="VIJ87_16955"
     CDS             2418..2831
                     /locus_tag="VIJ87_16955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446120.1"
                     /translation="MTNNGGKPLVDQLHEQAARGVEAIQLIVTERDDLRLQCDRMSAE
                     LALLRERNNQLDSRLKMASSERDHYMRHAVELVSRLNNIQLLIVSAVEEAGRVAYRPS
                     LVGKAQERETVSSEDVKAIEGILKRLPQNNGDTTQ"
     gene            2828..>3372
                     /locus_tag="VIJ87_16960"
     CDS             2828..>3372
                     /locus_tag="VIJ87_16960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446121.1"
                     /translation="MTNAIGFYNNGTLDHRAFTMLGLSAKSDDKAIGFFGTGFKYAIA
                     TLLRHGCDVQVWTDTRVYGFHTKHGKFRNKEFDFIYYNDGGDERELPFTTHLGANWKL
                     WQAYRELYTNALDEGGGVALIENVDDYGGRLGDICVCVIGDEFVKIYEQHAKYFLNAP
                     ALAQSFRMRCVEKIADSDNVV"
BASE COUNT          898 a          842 c          864 g          768 t
ORIGIN      
        1 tctaccgaag catacttctc aaccaacgta ccgggtggtg ccaatcccgg ctctgacact
       61 gtaggtatcg gctacgatgg cacgttcttg cgaaactacc taatcgcaag cggcgacccg
      121 acattgacgt tctctatcgg cgttgatgtt aacgacacca acagtgcaca aacactagat
      181 gcgttctacc ttctaaacct cacgacgcat gttgtgctgg cggcgttcac tacaccaaca
      241 gtagtgccgt cacagaacaa cggcacaggg ttccctgact atacactggg caccttcaac
      301 atcactcttg ggtcggacat tcacattggc gatcagctca tcttctttgc gcgtatcact
      361 aacgcaaacg atggtcctga tagcttcttt ctaatcccaa cccaacaggc aaacgagaca
      421 ccactacctg cagcagtgtg gctgttcggc ggtggcttag gtgtgttagg cttactagca
      481 cgcagacgta agcgtacacg tggtgcatgg gatgacttac cacgtgtaga cttcttgcct
      541 aaagttgcgt aagttgtagt agtactactc taaaggcgac ggcgctacat agcagtaatg
      601 gcagtagtag cgccgtcgct ctagcgagcg acagcgaaga agtatcgggc acttcgtgcc
      661 cgtagtagta gtcggtgtgt atcactcgac gtagttacaa caggagggag aattgctagc
      721 acaatcatgg ttgtacggaa gacgcatgac tagtccacat gacgcagttg ttgagcgtca
      781 tctcaagctg cccgatcaat tcaatcctca ttcatcagta gcagtactca atcaactagc
      841 ggagcgcatt gtcttcactg acgatgtgcc ttcgttgttg tatgatatgc acgacaacag
      901 acaactcacc tacgagggta tgctaactag tgtcaagctg ccattcgact gtttctggat
      961 cgaataccgt agcgtgctag gcataggtga tgtgtatgag gccaaacgcg ctgagtatgg
     1021 tgcgctagtc acacgcatgc ccaactcgcg tgtgcgtatg tacatagtga taggtacaga
     1081 cttcgttgat ctaggcacta tctctagcct agcctacgtt gttgagtttg aacattggcc
     1141 tcctgtcatg atgccaatgc ttagcaagtc gttgaacagc aaagcattgc agttctacat
     1201 caactacgcg tacaatcgtg acaagatcga gagtaaggat gaagacgcca ctaacatcat
     1261 cggtggcatc gtcactgaat taatcttcgg catcttccta gtcacacagc cgaaagtcta
     1321 caatgatgag aagatcgagt ggcactctaa gaaacaaggt gcacgtgcta agcacggcaa
     1381 gcctccgttg ttggagtatc gccgcattcg cttgcgtatc actaagcctg tgaagcggta
     1441 caacagtcaa ccgaccgcca gaacgcgcgg tatacagtgt atagacaacg aacacgacac
     1501 ggagagtagc gatgctatca atcatcgacg ctaccacaag gtcatgggcc acttcaggca
     1561 ctatctacgc catgatcccg cttatactgt gtggattgag cctcattatc gcggtgatcc
     1621 tgctcttggt atcacattca cagagcgaga tgtaaccaaa tgacaaacac acaagcacca
     1681 acgcaagcgc agatcgaggc ggcggcgcaa gccatcttta agcaacgctt cgggcgtgat
     1741 tggacacagt gggattgcaa agcagatgca gaagccgccc tcaccgccgc cgcacaggta
     1801 ggcacgtttg aggcaggacc ggacgagtgc gatactggcg ttgcgctcac aaaggccatt
     1861 gatgctgtgc tggcagaaga tacaccgcta gtgaaccaca ccatcgaacg ctgcgctcag
     1921 gtggcggaca gttttcacgc ctatgaccgc cccgctgatg aaatcgccgc cgccattcgc
     1981 aagctgaagg aggtagacac atgatgcact cattcaacca actatgtgca ttctgtcatc
     2041 tacctctagc tgatggagag ggtaatgact gttggccgtt cattgtctct ggccagtgct
     2101 gcgacgattg cgatgatact atcgtctatc cgcaccgttg cgtcatactt gcaactccta
     2161 gaaccaccaa tgataaggtt cactagcatg gcagacagag agaacatctg gctacagccg
     2221 ggtactagag tgcacatgct tgtctacaaa gacggcaagt ggcaggtgtg gactagtact
     2281 aacactcgca gcggcgacag tgatttgtgg tgtggtactt acatggaact acaccccaat
     2341 ggaatgtgta tacagtgtac acgtactgaa gcgtatgtga acaacatcgt agtaagacca
     2401 gcaacagggg atgcaacatg actaacaacg gtggtaagcc tttggtagac caactacatg
     2461 aacaagctgc acgcggtgta gaggctatcc agttgatagt aactgaacgt gatgacctac
     2521 gcctacagtg cgaccgtatg agtgccgagc tagcactcct gcgcgaacgt aacaaccagc
     2581 tagacagcag gttgaagatg gctagcagtg agcgcgatca ctacatgcgc cacgctgttg
     2641 agctagtgag tagactgaac aacattcagt tgttgatagt gagtgcagta gaggaagcag
     2701 gtcgcgtagc ctatcgacca tcgcttgtag gcaaggcaca agagcgtgag acagtaagta
     2761 gtgaagatgt taaagctatc gaaggcatcc tgaagcgtct accacagaac aatggggata
     2821 caacacaatg actaacgcta taggcttcta caacaacggc actctagacc accgtgcatt
     2881 caccatgctc ggcctcagtg ctaagtcaga tgacaaagcc ataggcttct tcggcactgg
     2941 cttcaagtac gctatcgcta cactcttacg ccacggttgt gacgtacagg tgtggactga
     3001 cactagggtg tatggtttcc atactaagca tggcaagttt cgcaacaagg agtttgactt
     3061 catctactac aacgatggtg gagatgagcg tgagctacca ttcactactc acttgggagc
     3121 gaattggaag ctgtggcaag cttatcgtga gctatacacc aacgcactcg acgaaggcgg
     3181 cggcgtagca ttgattgaga acgtagatga ctacggcggg cgacttggcg acatatgtgt
     3241 gtgtgtcatt ggtgatgagt ttgtgaagat atacgagcaa catgctaagt acttcctcaa
     3301 tgcacctgca ctggcgcaat catttcgtat gcgttgcgtt gagaagatag ccgatagtga
     3361 caacgttgta ta
//
LOCUS       DATCGC010001774         2814 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_224838, whole genome shotgun sequence.
ACCESSION   DATCGC010001774 DATCGC010000000
VERSION     DATCGC010001774.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2814)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2814)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2814
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224838"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..336)
                     /locus_tag="VIJ87_16965"
     CDS             complement(<1..336)
                     /locus_tag="VIJ87_16965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446122.1"
                     /translation="MRTWKFSVYDFRRLNREEIDWAGLRAAAVAIGIRKAARQAARDL
                     PPDEQERFVQRAMKRCSREKWLVKSQQDMAEAILTSSTALSADVRKGCDVLTEILEDD
                     SRETRIGLSA"
     gene            481..807
                     /locus_tag="VIJ87_16970"
     CDS             481..807
                     /locus_tag="VIJ87_16970"
                     /inference="COORDINATES: protein motif:HMM:NF020317.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GYD domain-containing protein"
                     /protein_id="HEY5446123.1"
                     /translation="MPKYLIQGSYSQQGLKGMLKEGGSKRREAAEQLIKGTGGRLEAY
                     YYAFGSDDFVIIADLPSNVDAAALSFAVNASGAVQSRMTVLITPEEADEATKKMKTVK
                     YRAPGE"
     gene            1069..1473
                     /locus_tag="VIJ87_16975"
     CDS             1069..1473
                     /locus_tag="VIJ87_16975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446124.1"
                     /translation="MSLLGSVASASAETVGERAKKDPSFKIYPVIFSVTVTSNSTPPA
                     VRVVGKGQGKNYRKISEAEAAKIIPAAWIKAVKKIIQADPSKPKMKDGKPVEVFTYFF
                     YVPERPNIVVSDLDKPLDKQPREPQFFDDSGE"
     gene            complement(1709..>2814)
                     /locus_tag="VIJ87_16980"
     CDS             complement(1709..>2814)
                     /locus_tag="VIJ87_16980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446125.1"
                     /translation="PALHSTNPGTDIYELPTGVSRASFEQKECAKETGRNADFLAKFK
                     QSTSCSYTPAILAYGKLADALKIHVDVPAAVYRTMEQATHKGVEKMADVYAHGLIRQT
                     WAGLVSKIAASSPKVIKNGLLYGAMVDHKGGIDHHPTLNRRGPDSNPAAPFLSSSTWA
                     MATNGSEIRNQIPPSLKTLGQMMAVRDVGEMAIIDHILAQQDRFGNVAKKEKIYWLEQ
                     TATGQKLRSVKATKANKPIDGTNQTTMQYLNANHIPYLQFPVMVLADNDCGLRQNSNV
                     VQKNNMVQHLRHISSRVYKHVQSFAKTNPADLLEYFENQTLMTSDEANGVIARLQEVA
                     SILKRNCDNGTLLFDSEPEIFLGMKPIPTKNCE"
BASE COUNT          708 a          662 c          703 g          741 t
ORIGIN      
        1 cgctgacaga ccaatgcgag tttcacgact gtcatcctcc agtatctcag tgaggacatc
       61 gcaacctttg cggacatctg cggacagagc ggttgaggac gttaggatag cttcagccat
      121 gtcctgttga gatttgacca accatttctc gcgtgagcac cgcttcatgg ctcgttgaac
      181 gaatcgctct tgttcatcag gcggcagatc acgagcggcc tgtctcgcgg ctttacgaat
      241 cccaatcgca acggcagctg ctctaagccc agcccaatct atttcttcac ggttcagccg
      301 acggaaatca tagacggaga acttccaagt tcgcaaactt tgcactgctt ttttttgaat
      361 cgacggcgag ccgcgctttc aggtgggaaa gtgatcacca ttcatgacga cagcgagttg
      421 atgcgactcg gatcaagtcg tagcgtgagg ctagtcttaa cgctggaaag gagcgagcaa
      481 atgccaaaat acctaattca gggatcgtat tcgcaacaag gtttaaaggg gatgctcaaa
      541 gagggcggat cgaagcgccg cgaagctgcc gagcaattaa ttaaaggaac gggtggacga
      601 ctggaagcgt actactatgc ttttgggagc gacgacttcg taatcattgc cgatctgcca
      661 agcaacgtgg acgcagcagc cttgtcgttc gccgtcaatg ccagcggagc cgtgcagtcg
      721 cgaatgacag tattgatcac gccagaggag gccgacgaag ccacgaagaa aatgaagacg
      781 gtcaagtatc gcgcacccgg agaatagaac tgcgcggcca gttcgacttc gggagccgaa
      841 actacttttt cagtcgctcg tgaagccgtg attcgcgttt acgacgcgaa cgggaacgtg
      901 gtcgagacgc tcgaacataa gggcgattac cgggtgtcga atggcctaaa ttgttttctt
      961 gcaccgagat aaggtggact tagggaaaaa atattcgtga cgtttggtga agattcgtcc
     1021 aatcatactt agatgacatc attgcggctt ctacgttttg ccggtctcat gtcgctcctt
     1081 ggatcagttg catccgcatc tgctgaaacg gtgggagagc gagcgaagaa agaccctagc
     1141 tttaaaattt acccggtaat tttcagtgtc acagtcacga gcaactcgac acccccagcg
     1201 gttcgagtgg tcgggaaagg gcagggcaaa aattatcgta aaatatcgga ggcggaggcg
     1261 gcgaagatta tcccggcagc atggattaaa gcagtgaaga agattattca ggccgaccct
     1321 tcaaagccta agatgaaaga tgggaagccg gtcgaggtct tcacatattt cttttacgtt
     1381 ccggagcgtc ccaatatcgt cgtgtctgac ttggacaaac cgctcgacaa gcaacctaga
     1441 gagccgcaat tctttgatga tagcggcgaa taacatcgcg gcgaggtttg tcgcgatttt
     1501 atcaggaggt ttgccgtagc cgtattgaac aaatgcaatc tgcttttgca cgtctttgga
     1561 ttccgaccaa tcgcgcaaga tacattcaac gcgcgtcatt acttcgccat tggtgtctgt
     1621 gattttctcg tgcgcgacgc tttgcgccaa tcgccttaaa cgagtcgcac accgctttag
     1681 aaactagcag ggatcaatga cgtgccagtt attcgcaatt ctttgttgga attggcttca
     1741 tacctaggaa aatttcgggc tctgaatcaa acaggagagt tccattgtca cagtttcttt
     1801 tcagaattga ggccacctcc tgtagtcgcg caatgactcc gttggcttca tcactcgtca
     1861 taagagtttg attttcaaaa tactcgagca aatcggccgg atttgttttt gcaaaactct
     1921 gaacgtgttt gtagacgcga gaactgatgt gacgaagatg ctgaaccata ttattttttt
     1981 gaactacatt gctattttgc cgcaatccac aatcgttgtc ggcaagaacc attacgggaa
     2041 actgaagata aggaatatgg ttcgcgttta gatactgcat cgtcgtttga ttagtaccat
     2101 caatcggttt gtttgccttc gtagctttta cagaacgaag cttttgacca gtggctgttt
     2161 gctccaacca ataaattttt tcttttttag ctacatttcc aaacctgtcc tgttgagcca
     2221 atatgtgatc gataattgcc atttcaccta catcgcgaac ggccatcatt tgcccgagtg
     2281 tcttcagcga aggcggaatt tgattcctta tctctgagcc attcgtagcc atggcccaag
     2341 ttgaagatga aagaaaggga gctgcaggat tggaatcggg acccctgcga ttcaaagtag
     2401 gatggtgatc aattccaccc ttatggtcga ccattgctcc gtaaagaagt ccgttcttta
     2461 tcactttagg acttgaagct gcaattttgc taacgagtcc agcccaagtt tgccttatga
     2521 gaccgtgagc atagacgtcc gccatttttt cgactccctt gtgggttgct tgttccatcg
     2581 ttcgatagac agctgccgga acatcaacat gaattttgag tgcatcagcc agctttccgt
     2641 aagctaatat cgccggagta taagagcagc ttgttgattg cttaaatttt gctagaaagt
     2701 cggcgtttct ccctgtttcc ttggcgcatt ccttctgttc aaaggatgct cttgaaactc
     2761 cagtcggtaa ttcgtagata tcagtcccag gatttgtgct atgaagcgca ggac
//
LOCUS       DATCGC010001775         1214 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_291617, whole genome shotgun sequence.
ACCESSION   DATCGC010001775 DATCGC010000000
VERSION     DATCGC010001775.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1214)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1214)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1214
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291617"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            197..>1214
                     /locus_tag="VIJ87_16985"
     CDS             197..>1214
                     /locus_tag="VIJ87_16985"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEY5446126.1"
                     /translation="MRRLLPSLLVGIALLFTPKQQSSSVFAAPSLSYSQSTAISEGRV
                     LRGWSIDQNLRALGGVILFQQSMSWEQYSWRILLAVLFMFLQALLIIGLLIHRAKRRN
                     AEESLKLNEKRYRDVVDTQAELICRYRSDSTLTFVNDAYCRYFGKDREELIGSKFIEL
                     LPEYAREAALSRVAAIIKNQDDKMDAHEVVLPNGEIGWQQWIDRVVESNGHGIELQGV
                     GRDITEQKRAAEELRQSEARFREMADTAPVFVFILDSDLQCTFLNQYACDFAGRRKEE
                     LLGDGGSALVHEEDREQCLIAYSKAKTLRRPIKLEFRACRFDGEYRWLYHNAIPRFAS
                     DGQFR"
BASE COUNT          285 a          290 c          316 g          323 t
ORIGIN      
        1 tatcgggtaa atgcacggaa tcttgtacga atctctagtc ccagtgtgat cacggtcgtt
       61 acgcccccgt aaatttacct tcttgcaaga ctccgattgg tttgccagaa tgcctatgtc
      121 ctgacacgta cactacggaa tagcggaacc ttgatggcct gcccccaaag cttggtcact
      181 tcgaaaagag aatattatga gacgtctcct tccgtctctt cttgttggca tagcgctgtt
      241 gtttacccct aaacagcaga gttcctctgt gttcgctgcg ccttcgttat cctactcaca
      301 atcaacagcc atttccgaag gtagagtgct ccggggttgg agcatcgatc agaatctgcg
      361 tgccttaggc ggcgtgattc tctttcaaca gtcgatgtct tgggagcaat acagctggcg
      421 aatcctctta gctgtattgt ttatgttcct ccaggcgttg ctcatcatcg ggctgctaat
      481 acatcgcgcg aaacgtcgca atgcagaaga atctttgaag ctcaacgaaa agagataccg
      541 cgatgttgtt gacacccagg ccgaactaat ctgccgctac cgaagcgatt ccacgctgac
      601 atttgttaac gatgcgtatt gccgttattt cggaaaggat cgcgaggaac ttatcgggag
      661 taagtttatt gagcttcttc cggagtacgc gcgcgaggcc gctttgagcc gcgttgcagc
      721 gataattaag aatcaggacg acaaaatgga tgctcatgaa gttgtgctac ctaacggcga
      781 gatcggttgg cagcagtgga tcgaccgcgt cgttgagagc aatggccatg gcattgagtt
      841 gcagggagtt ggtcgcgaca ttactgagca gaaacgggcc gcagaagagt tacgccagag
      901 tgaagcgcgt tttcgagaga tggctgatac cgcaccggtg tttgtcttca tccttgattc
      961 ggatctgcag tgcacattcc ttaaccagta tgcttgtgac tttgctggtc gtcgcaaaga
     1021 agaactgctt ggtgatggtg gctccgcatt agttcacgaa gaagatcgtg agcaatgttt
     1081 gattgcgtac tcgaaagcca aaacccttcg aaggccaatc aagttggaat ttcgggcttg
     1141 ccgatttgat ggtgagtatc gttggctcta tcacaatgcc atacctcgat ttgcatcaga
     1201 cggtcaattc cgtg
//
LOCUS       DATCGC010001776         2339 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_390183, whole genome shotgun sequence.
ACCESSION   DATCGC010001776 DATCGC010000000
VERSION     DATCGC010001776.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2339)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2339)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2339
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_390183"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..412
                     /locus_tag="VIJ87_16990"
     CDS             <1..412
                     /locus_tag="VIJ87_16990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446127.1"
                     /translation="VIPGTHHFSDEDFRERGYAMVPGSDSGLNGSRCWGVPPRVEIVD
                     VRLKAGEFYVFHSRLLHASIQGRRLTSRMVRNRMARRWGGIRNQLRNKLTHEDGIRYS
                     IALRIATANTRILPAAFVESPSRNEVVRFRERTP"
     gene            complement(460..1170)
                     /locus_tag="VIJ87_16995"
     CDS             complement(460..1170)
                     /locus_tag="VIJ87_16995"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY5446128.1"
                     /translation="MEKDVRTYQCKGLELSVHLRESTRYTDIGEAGPLIIDVFSRIKD
                     IPGWFNVDDCGHFFLVLSYQSATGVKGDLLEIGSYHGRSTVLMATCLQPGERIVVCDA
                     FESNIDDHYANKPSPAALISNMKRLNPRIGEDRIVIHKCLSNDLHLNKEEKFRFIHID
                     GGHSAEQAYFDLNLCSKHLTPHGIIVMDDYYNKLWPGVTQGTDKFLNDSDTLGVLADL
                     NRHGAHGRKLYLIKKHVA"
     gene            1748..>2339
                     /locus_tag="VIJ87_17000"
     CDS             1748..>2339
                     /locus_tag="VIJ87_17000"
                     /inference="COORDINATES: protein motif:HMM:NF024845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-TFIIB domain-containing protein"
                     /protein_id="HEY5446129.1"
                     /translation="MPDASEFLCPRCKAALKEVRTSGGVFYGCDVCGGRAVTIELLRK
                     RFTPDSINPLWLHAMRGEGRVGLPCPSCRQPMIGVALSNRAEINVDVCKHCHAIWFDA
                     HEVDTLVPRQPEPVAPELPQKAREMLAIAEVERLSKQAEGSEFDSAAPDESWKQIAAF
                     LGMPVEFDAPEEQRKPWATWLLSAAIICASLVAFSNL"
BASE COUNT          566 a          591 c          580 g          602 t
ORIGIN      
        1 ggtcatcccc ggtactcacc acttcagcga cgaggacttc cgcgagcgag gatacgcgat
       61 ggtacccggc tctgatagcg gcctcaatgg gagccgttgc tggggcgttc caccgcgagt
      121 ggaaatcgta gacgtacgcc tcaaagctgg agaattctac gtgtttcatt cgcggcttct
      181 tcatgcttcg attcaggggc gccggttgac ttcacggatg gtacgtaatc gaatggcacg
      241 ccgctggggt ggaattcgaa accagttgcg taacaagctg acacacgaag atgggatccg
      301 ctattccatc gcgctgagga tcgcgacagc aaacacgcgg atcctgccgg ccgcgttcgt
      361 cgagtcgcct tctcgcaatg aggtggtgcg ctttcgggaa aggaccccct gacacggtta
      421 acagcagcgc agcgaaaaag cggtcaggtg cagcgtttgt taggctacat gtttcttgat
      481 gagatagagc tttcttccat gagcaccatg acgatttaaa tctgccaaaa caccaagcgt
      541 atcactatca tttaagaatt tatctgttcc ctgagtaact cctggccaca gtttattata
      601 ataatcatcc atgacgatga ttccgtgggg agtaaggtgc ttgctacata gattaagatc
      661 gaaataagct tgttccgcag aatgcccgcc gtctatatga ataaacctaa atttctcttc
      721 cttgttgagg tgaagatcgt tactcaaaca cttgtgaata acaatacgat cttctccaat
      781 tcttggattt aaacgtttca tgttagaaat aagagctgca ggtgatggct tgttagcata
      841 atgatcatct atattagact cgaaggcgtc acaaacaacg attctctccc ctggttgcaa
      901 gcacgttgcc attaacactg ttgatcggcc gtggtagctt ccaatttcca acaagtcacc
      961 ttttacaccc gttgctgact ggtaggataa tactagaaaa aagtggccac aatcatcaac
     1021 gttgaaccaa ccaggtatgt ccttgattcg actaaataca tctattatta gcggccctgc
     1081 ttctccaata tcagtatagc gcgttgattc acgaagatga accgaaagct ccaatccttt
     1141 acattggtaa gttcgaacat ctttttccat gattttggga ctaacgtttt caaagtgcgc
     1201 ttcactgtca attaccctca aggtttttcg gcctaacgag gattcggccc aataattgtg
     1261 cctttaaaga cgcatttttg gatctattac ggttcttgct agaattagac tgtaacttgc
     1321 aatctatttc tgcctcgata gagggcagtt tgcaggaaaa caataccagt tggcaagccc
     1381 tgttcactga actgtcagcc tcatcacagg atgaatttct caagctgcat agccttgaag
     1441 gtcggttctc cggttcgatt ggtctgcggg agcatggttg atgtcgaaaa atgctttgcc
     1501 gacaacaatg atgatcggcg gctgagtgat cttcaacttt ctgccagatc gaacacgaaa
     1561 aaggcaactt cgcgtgtgtc caactgaaaa cagttttacg aatttcacac gattgcagtc
     1621 ttgctggtat ctcggcaaca acgattcccg catctatcga tccagcaaaa gcaggtgacc
     1681 agcgagaggt ggcgcccgga tttttctttt cacttctcac taatcacgtc tcactacttc
     1741 gatcaacatg cccgatgcct cagagtttct ctgcccgcgg tgcaaggcgg cgctgaaaga
     1801 agtgcggact tctggcggtg tattctacgg ttgcgatgtg tgtggcggtc gcgcggtgac
     1861 catcgagttg ctgcgcaaac gattcactcc tgattccatt aatccgctgt ggctgcatgc
     1921 gatgcgagga gagggacgcg tcggcctgcc ttgtccatcg tgccggcagc cgatgatcgg
     1981 cgtcgcattg tccaaccgag cggaaatcaa cgtcgatgtc tgcaagcatt gccatgccat
     2041 ctggttcgac gctcacgaag ttgacacgct cgttccgcgc cagccggaac cggtcgctcc
     2101 cgaactcccg caaaaagcgc gcgagatgct cgcgatcgct gaagtcgagc gtttgtccaa
     2161 acaggctgag ggctcggaat ttgatagcgc ggcgcccgac gaatcgtgga agcagatcgc
     2221 cgcgttcctt ggaatgccgg ttgagttcga tgcaccagaa gagcagcgaa agccgtgggc
     2281 aacatggctg ctttcagctg ccatcatttg cgcaagtctc gttgcatttt caaatctgc
//
LOCUS       DATCGC010001777         1989 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_157063, whole genome shotgun sequence.
ACCESSION   DATCGC010001777 DATCGC010000000
VERSION     DATCGC010001777.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1989)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1989)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1989
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_157063"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1989
                     /locus_tag="VIJ87_17005"
     CDS             <1..>1989
                     /locus_tag="VIJ87_17005"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HEY5446130.1"
                     /translation="NQAAVADAKVTITKKSTNVSTTTQTSSAGQFEFNNLPLGDDYTV
                     TVEATSFKTLTLSDVKVQLNKINDLSAQLTIGAIGETVTVTSGGAELVDTTTANLSKS
                     FSERQVVELAQTSVGGAFGGGVNNLALLAANVSSSGGAGVGSGGSVGGQRARNNNFMV
                     DGVDNNDKSVTGPQVYVSPEVVAEFSLLQNQFSAEFARSNGGQFLTVTKSGTNDFHGS
                     AYGFVRNRFLNALDTRQIEDGFVRQRDVPGTQFLPRYDLFRGGGNLGGPVILPRFGEG
                     GPGLWNGKNKLFFFTSYERLHVGFGSAPAGITALTAPALATVGGTPGVSATNLSIYRQ
                     FVPVAATNNAGMINFCRIRPDANGVCSAANTLQLPVGTIELPPQPQFNKQNNWVLNLD
                     YVQSTKTQHHGRWNQTDNYGVGLAGLPIFNEPVPNKQRLFSYTLLHQFTAKLTSETRL
                     AYRRSDGSNLVTTSFRFPGLDTTFPNLTLEDLGVIMGPPGNYPQTGVENNYQVVNNFT
                     YLAGSHSLKFGGDFRKVISPQTFTQRSRGDYDYSESQFYFYDLTPDFVAQRSVGDVVY
                     YGDQKILYAFGQDDWRIRPNLTLNLGVNYSYQQLPAGTKLQALNSIASVPGLLEFNEP
                     KAQTKNFAPKVGFAYSPNFNEGLLGRVFGKDGTTSIRAG"
BASE COUNT          483 a          524 c          505 g          477 t
ORIGIN      
        1 aaccaggcag cggttgccga tgcaaaggtg accattacca agaagtcgac gaatgtttcg
       61 accactacac aaacatcgag tgctggacaa tttgaattca acaacttgcc gctcggtgat
      121 gattacaccg tgacggttga agcgaccagc ttcaaaacgt taacgctgtc agacgtgaaa
      181 gttcagttga acaagatcaa tgacttgtcg gcacagctca ccattggagc aatcggcgaa
      241 actgtcaccg tgacctccgg tggtgcggag cttgttgaca caacgactgc taacctctcg
      301 aagagtttta gtgagagaca agtggttgaa cttgctcaga cgagcgtcgg cggagcgttt
      361 ggtggcggtg taaataatct tgctttgcta gccgccaacg tgtcgagttc cggcggcgcc
      421 ggcgtgggct ccggaggatc tgtcggcgga cagcgcgcgc gcaacaacaa cttcatggtt
      481 gacggtgtcg acaacaacga caagtcagtc accggtccac aagtctatgt ttcacccgaa
      541 gtggttgcgg agttttcact tcttcagaac caattctcag ctgagttcgc acgatcaaac
      601 ggtggtcagt ttctaacggt tacaaagtca ggcacgaacg actttcacgg ttcggcctat
      661 ggctttgttc gcaaccgatt cttgaacgca ctcgatacac ggcaaattga agatggattc
      721 gttcggcaga gagatgttcc gggcacacag tttcttcctc gatacgatct gtttcgtggt
      781 ggtggaaatc ttggtggccc ggtaatcctg ccgagatttg gtgaaggtgg cccaggattg
      841 tggaacggca agaacaaact attcttcttc acgtcctacg aacgcttaca tgttggtttt
      901 ggttcagcgc cggcaggcat tactgcgctt actgcgcccg cgctcgcgac cgtaggggga
      961 acgcccggag tctccgcgac gaacctgagc atctatcgac agtttgtccc cgttgcagcg
     1021 acaaacaatg caggcatgat caacttctgt cgtatccgac ctgacgccaa tggagtctgc
     1081 tcggcagcca acacgctaca acttccagtt ggaacgatcg agttgccacc acagcctcag
     1141 ttcaacaagc agaacaattg ggttctgaat cttgactacg tacagagcac taagacgcag
     1201 caccacggtc gttggaatca aactgacaac tacggtgttg gtcttgccgg cctgccgatt
     1261 ttcaacgagc cagtgccaaa caaacagcgt ctcttttcct atactctgct gcatcaattc
     1321 accgcgaagc taaccagtga aacacgactc gcttatcgac gttctgacgg ttcgaatctg
     1381 gttaccactt cgtttcgttt ccctggtttg gatacaacat ttccaaatct gacgctggaa
     1441 gaccttggcg taatcatggg accgccggga aactatcctc aaacaggtgt cgaaaacaat
     1501 taccaggtcg tcaacaattt tacctatttg gccggcagtc actcactcaa atttggtggt
     1561 gacttccgca aagtcatttc accgcaaacg ttcactcaac gttcgcgagg cgactacgac
     1621 tactctgagt cgcagttcta tttctacgat ctaactcccg acttcgttgc ccaacgcagc
     1681 gtcggagacg tggtctacta cggcgatcag aaaatcctct acgcttttgg gcaggatgat
     1741 tggcgaattc gaccaaatct aactctgaac ctgggcgtga actattccta tcagcagctt
     1801 ccggccggta ccaagttgca ggcgttgaat tcaattgcct cggttccggg actgctcgag
     1861 ttcaatgaac cgaaagcgca gacgaagaac ttcgctccaa aggttggctt tgcttactcg
     1921 ccaaacttta acgaaggact gctgggtcgt gtgtttggaa aagatggtac tacgtcgatc
     1981 cgggccggg
//
LOCUS       DATCGC010001778         1863 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_491150, whole genome shotgun sequence.
ACCESSION   DATCGC010001778 DATCGC010000000
VERSION     DATCGC010001778.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1863)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1863)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1863
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_491150"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            624..1586
                     /locus_tag="VIJ87_17010"
     CDS             624..1586
                     /locus_tag="VIJ87_17010"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY5446131.1"
                     /translation="MKISFNTLNIDYRKLNKYNGFGNAGNRMIDTLESLGYDVSINDH
                     TADVGFVFNHPRWAMFYPHQYNILYFPWESTELQEGWPTVMDACDEIWTPSNWCKDIF
                     ENFTTTPVYVYEHGVGEDWVNRKRYVKDTFNFLNVGAEAARKNGWSVVRAFRKAFPHN
                     PEVRLTMKMLSHVSVPLPPSLGKVTYINERWPLAKLQKEHYKHHVYVYPSSSEGFGLT
                     PLQAMASGMPTICTENWAPYADLLDPDLALHGTLGTTNWEEIHPGKLFIISEDETIDR
                     MRYAYDNFDSVAQNAYDLAPKVHERYNWRTLTASAFGDLKKRLS"
     gene            1684..>1863
                     /locus_tag="VIJ87_17015"
     CDS             1684..>1863
                     /locus_tag="VIJ87_17015"
                     /inference="COORDINATES: protein motif:HMM:NF037695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446132.1"
                     /translation="MTKFSFQLSDSFLDEYKNRKPNWGFTDAGGNSVGELTFIRTYSR
                     VKDDGTKEQWWEACAR"
BASE COUNT          498 a          459 c          456 g          450 t
ORIGIN      
        1 ttaaaggttg ccagtgaggt ttcttcgtcc ttgacgacgt ggagtcgtcc gtcgtcgtca
       61 atcgaccaga ggtctgcttc atacgagacc tttgagttgt agtcttcgtt aagtgttacg
      121 gttaccatta ttatctttct ataaagtgct ctgtgactac cgcgcgcacg ttgtcgattg
      181 tcgcgctacc cggcagggta gtggagttac agtcatagca attgaggacc aaatcatcgt
      241 catcaatcat cgtgttacgt cggctacctg ttatgagggt tccgccacaa gggcacagca
      301 acggtctggt gaggcctcgc cgcaccagtt tgttgtatgc gtggaataac gcgaataagt
      361 tttcgtccat tttaaaacca agacagcgag gcctccggcc tcgctaagtt aagatacttc
      421 aagtggtact agtgataact ggttgatact agttgactag tagaaactag tgaccttctc
      481 ttctcttgat atcagtgtac acaggggtcg ttcttcatgt caaacggcag attgggttat
      541 caccataccg tcggtatgtg aatgcatctg aacagaccac atgctatact caagtctaac
      601 acaactcagg aagaatctca accgtgaaaa taagttttaa tacactgaat atagattaca
      661 gaaaactcaa caagtacaac ggtttcggca acgccgggaa ccgtatgatt gatactttgg
      721 agagcctcgg atatgacgtg agtattaacg accataccgc cgacgtaggc ttcgtattca
      781 accatccgcg ctgggcgatg ttttaccctc atcagtacaa tatcctatac ttcccgtggg
      841 agtccacgga actacaagag ggctggccga ccgtcatgga tgcatgtgac gaaatctgga
      901 cgccctccaa ctggtgcaag gatatctttg agaacttcac cacgacgccg gtatacgtat
      961 acgagcacgg agtaggtgaa gactgggtta atcgcaaacg atacgtcaag gataccttta
     1021 acttccttaa cgtcggagca gaggcagcgc gtaagaacgg ctggtctgta gtcagagcct
     1081 ttagaaaggc attcccgcat aatccagaag tgcggctgac catgaagatg ctcagccatg
     1141 tcagtgtacc acttccgccg tcgctcggca aggtcaccta tattaacgag cgttggcctc
     1201 tggcgaagtt gcagaaggaa cattataagc atcatgttta tgtgtacccg tcgtcctcgg
     1261 aaggattcgg actaaccccg ttacaggcca tggcgagcgg catgccgacc atctgtacag
     1321 aaaactgggc accttatgcc gatttacttg acccggacct agcactgcat ggtacactgg
     1381 gtaccacgaa ctgggaagag attcaccccg gcaaactttt catcattagt gaagacgaga
     1441 ccatcgaccg catgcgctac gcatacgata actttgactc ggtggcccag aacgcttacg
     1501 acctggcacc taaggtgcac gagcgttaca actggcgcac cctcacggca tccgctttcg
     1561 gggacttgaa aaagagactc tcttaaagca taaaattagc caccagcggc agccttaggg
     1621 ctgccgtttt gctatgatgg ttacttcacc caaacatatt ttagtaacag gagtatatac
     1681 aaattgacaa aattcagttt tcaactgagc gattccttcc ttgacgagta caagaatcgc
     1741 aagcccaatt ggggctttac agacgccggg gggaactcgg taggagaact tacgttcatc
     1801 cgcacataca gtcgagtcaa ggacgacggc accaaagaac aatggtggga agcatgcgcc
     1861 aga
//
LOCUS       DATCGC010001779         1579 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_491152, whole genome shotgun sequence.
ACCESSION   DATCGC010001779 DATCGC010000000
VERSION     DATCGC010001779.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1579)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1579)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1579
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_491152"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1161)
                     /locus_tag="VIJ87_17020"
     CDS             complement(<1..1161)
                     /locus_tag="VIJ87_17020"
                     /inference="COORDINATES: protein motif:HMM:NF015380.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="clostripain-related cysteine peptidase"
                     /protein_id="HEY5446133.1"
                     /translation="MQKKKAVWTVMIYLAGDNNLTSECFFALTEMKKALPGEHINVIA
                     QFDPQDERVPTQRYEINRNGPDSSLFEDIIDEAHFDPSIREVTFKNESDRARTFAQSR
                     IAHRKTIQTLLAETNDLTLLAFEEENVTDDTDTGSPITLYNFLSFCLQEYPAEHYLVV
                     LSGHSGGTDSDFLLTDESSRGSLTFNELKAVFKHLEADLNGQTIDIIGMDNCLMSMAE
                     ICYELKGVAQFLVGSEAYSPASGWPYRQILERLKQESANSHSELAKNVATGIVEEYTN
                     YYSGYWLSGMSVAQSALDLCKVEELRSLVNKLGCALEKELLEEFEPDIQKRVEGHLPH
                     PFRDQLVLAHWEAQSYNGELFVDLYDFCNCLERRAASREVREACSRVKDFVKS"
     gene            complement(1386..>1579)
                     /locus_tag="VIJ87_17025"
     CDS             complement(1386..>1579)
                     /locus_tag="VIJ87_17025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446134.1"
                     /translation="KGVQFRESNPEKPDGIRRLQWMVYRKFAGQVQLVNLMLSSSGKG
                     FPEHQDAMYGILYSTKITH"
BASE COUNT          384 a          394 c          381 g          420 t
ORIGIN      
        1 agacttgacg aagtctttga ccctcgaaca agcttcacga acttctcgcg atgccgctct
       61 cctttccagg cagttacaaa aatcatagag gtcaacaaac agctcaccat tgtaggattg
      121 tgcttcccag tgagctaaga cgagttggtc gcgaaaagga tgcggaagat gcccttctac
      181 tcgcttctgg atgtcaggct caaactcttc caacaattcc ttctcgagag cacagccaag
      241 tttgttcacc agcgaacgaa gttcttccac cttgcaaaga tcgagagctg actgtgctac
      301 agacatgccc gacaaccagt agcccgaata ataattcgtg tactcttcaa cgatccctgt
      361 tgctacgttt ttggcgagtt ccgagtgtga gttcgccgac tcttgcttca acctctcaag
      421 aatttgtctg tatggccagc cggatgctgg actgtacgcc tctgaaccaa ctagaaactg
      481 agcgactccc ttcagctcgt agcagatctc agccatgctc atcagacaat tgtccattcc
      541 gatgatatcg atcgtttgtc cgttgagatc ggcttcgagg tgtttgaaga cggccttcag
      601 ctcgttgaac gtcagtgatc ccctggagct ttcgtctgtc agaaggaaat cggaatcagt
      661 acctcctgaa tgacctgata ggacaacgag ataatgttca gccgggtact cctgaagaca
      721 aaagctcaga aagttgtaga gggtgatagg tgaaccggta tcggtgtcgt cggttacgtt
      781 ttcttcctca aaagcgagaa gcgtcaagtc attggtttcc gccagtagcg tttgaattgt
      841 tttgcggtgt gctatccgag attgcgcaaa cgtgcgcgcc cgatcgcttt cgtttttgaa
      901 cgtgacttcc cggattgagg gatcgaagtg ggcttcgtcg ataatgtcct cgaacagcga
      961 tgagtcgggc ccattccgat taatctcgta acgttgagtt ggaacgcgtt catcctgagg
     1021 atcaaattgg gcgatgacgt tgatgtgttc acccggcaac gctttcttca tttcggtcaa
     1081 ggcaaagaag cattcactgg tcaggttatt gtcgccagcc agatagatca tcactgtcca
     1141 gacggctttc tttttttgca tggtaaggac ctccaatggg agcggaactg atttgggatc
     1201 agttcctggg gtctaaaact gttgaggaga ggtgttgttt ttggtgtccg atatgcttct
     1261 gcttgtcgta acgatccgcg tcggacgcac attgccactg agaggcccct ggttgaatcg
     1321 acgacaagct aaagcatatc ggacagacca aagtccaaag accgctgact accgagacaa
     1381 atcattcaat gcgttatctt cgtagagtac aagatcccat acatcgcatc ctggtgctcc
     1441 ggaaatccct tgccactgga cgaaagcatc aagtttacca attgaacctg tccggcaaat
     1501 tttctataca ccatccactg taagcgacga atgccatcgg gcttctcagg atttgattct
     1561 ctaaactgca ctcctttta
//
LOCUS       DATCGC010001780         1311 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_390238, whole genome shotgun sequence.
ACCESSION   DATCGC010001780 DATCGC010000000
VERSION     DATCGC010001780.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1311)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1311)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1311
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_390238"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1311
                     /locus_tag="VIJ87_17030"
     rRNA            <1..>1311
                     /locus_tag="VIJ87_17030"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          344 a          297 c          440 g          230 t
ORIGIN      
        1 ccggtctgaa cacatagggc cggtagaggg aacgtgggga attgaaacat ctcagtaccc
       61 acaggaaaag aaagcaacag cgactccctg agtagcggcg agcgaaacgg gaacagccta
      121 aaccgagctg gtggtaaagc ctggtggcgt tgccagtttg gggtcgtggg acccgatagg
      181 agaggcacca gactctccac agagttacca aactgatgcc tagcggaagc gttttggaac
      241 gtcgcgccac agagggtaag ggccccgtac gcgaaagata agaagactcc gattggtgtt
      301 cccaagtagc accgaatccg ggaaatttgg tgtgaatctg cgaagaccac ttcgtaaggc
      361 taagtatacg taggcgaccg atagtgaact agtaccgtga gggaaaggtg aaaagcaccc
      421 cgggagggga gtgaaatagt acctgaaacc gttggcttac aatcagtcaa agcgtcgtta
      481 cagacttcgg tctgtagccg tgatggcgtg ccttttgaag aatgagccag ggagttacgg
      541 tacgtggcaa ggttaaccag tgatggggag ccggagcgaa agcgagtctg aatagggcgt
      601 tcagtcgcgt gctgtagacc cgaagccgag tgatctatcc atgggcaggc tgaagcggga
      661 gtaagacccc gtggagggcc gaacccacct aggttgaaaa ctggggggat gacctgtgga
      721 taggggtgaa aggccaagca aactcggtga tagctggttc tccccgaaat gcatttaggt
      781 gcagcgttgc gtgttcagtt acggaggtag agcactggat gggctagggg gcccacaagc
      841 ttactgatcc cagccaaact ccgaatgccg taactccaga gcgcagcagt gagaccatgg
      901 gggatgagct tcatggtcga aagggaaaca gcccagaccg ccgactaagg ccccaaattc
      961 tggactaagt gggaaacgat gtgggattgc acagacagcc aggaggttgg cttagaagca
     1021 gccacccttg aaagagtgcg taacagctca ctggtcgagt gatcctgcgc ggacaatgta
     1081 acggggctca agttcagagc cgaagtcgcg gatgcacacc ttgtgtgtgc gtggtagggg
     1141 agcgtcgatg ccggagtgaa gcgacggtgt gaaccggcgt ggactggtat cgagtgagaa
     1201 tcctggcatg agtagcgaga gaggggtgag aaacccctcc gccgaaagcc caagggttcc
     1261 tggggaaggc taatccgccc agggtgagtc gggagctaag acgaggccga g
//
LOCUS       DATCGC010001781         1901 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_125771, whole genome shotgun sequence.
ACCESSION   DATCGC010001781 DATCGC010000000
VERSION     DATCGC010001781.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1901)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1901)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1901
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125771"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1016
                     /locus_tag="VIJ87_17035"
     CDS             <1..1016
                     /locus_tag="VIJ87_17035"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEY5446135.1"
                     /translation="MADLGFLGVIFPEEYGGAGMGYVEYATIIEELSRVDGSVGISVA
                     AHNSLCSNHIFKYGSEDQKKKFLTPLASGAHLGAWGLTEPSAGSDASGTKSTAVRTDG
                     GWIVNGSKNFITHAIHADTCVAMAVTDRAQRSKGISAFIFEKGRQGFSPSKKENKLGL
                     RASETASVVFEDCFVPDENLLGEEGNGFVNAMEILDGGRISIAALAVGIAQGAFESAV
                     RYAKERQQFGKPISEFQAIQFKLATMATQIDAARLLMYRAASLKDQGKKTTKESSMAK
                     LFASEISVEVCEEAIQIHGGYGYTKDYPAEKYWRDSKLCTIGEGTSEIQRIIIAREVL
                     RQF"
     gene            1027..>1901
                     /gene="meaB"
                     /locus_tag="VIJ87_17040"
     CDS             1027..>1901
                     /gene="meaB"
                     /locus_tag="VIJ87_17040"
                     /inference="COORDINATES: protein motif:HMM:TIGR00750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0015819 - lysine transport [Evidence IEA];
                     GO_process: GO:0015822 - ornithine transport [Evidence
                     IEA];
                     GO_process: GO:1903826 - L-arginine transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl Co-A mutase-associated GTPase
                     MeaB"
                     /protein_id="HEY5446136.1"
                     /translation="MVSAANSLSERVSAGEAAAVARAISKIEDGSSDAAGLMKHIYQS
                     SRGGLVIGITGAPGAGKSSLVDKLALHYRGADERVGIVCVDPSSPFSGGAILGDRIRM
                     QTLGLDPGVFIRSMATRGNLGGLSRATVDAVAILDAAGYAKIIVETVGVGQDEVEIVK
                     AAEVSVVVLVPGMGDDIQAIKAGIMEIGDIFVINKADRDGVYSTEKELESLLSLSARA
                     DGWDPPIVKTVATESRGISELAEAIERFCQVQRSADMTSERRRAIARWRIVELLRERL
                     LASALESKGSEEVLER"
BASE COUNT          436 a          434 c          581 g          450 t
ORIGIN      
        1 agatggctga ccttggtttt ctaggtgtca ttttcccgga ggagtacggc ggcgcgggaa
       61 tgggctacgt ggaatacgcc acgatcatcg aagagctttc tcgcgtggac ggttcggtcg
      121 gcatatcggt cgctgcacat aattctcttt gttccaacca catctttaag tacggctctg
      181 aagatcaaaa gaagaagttt ttgactccgc tcgcttccgg agcccacctc ggtgcatggg
      241 gactgactga acccagtgct ggttcggacg cgtccggcac taagtcaaca gcagtgcgaa
      301 ctgatggtgg ttggattgtt aacggttcta agaacttcat cactcatgca attcatgctg
      361 atacgtgcgt ggcaatggct gttactgatc gagcgcaacg tagcaaaggc atatcggctt
      421 ttattttcga gaaaggccgg cagggcttct caccttcaaa gaaagaaaac aagcttggtc
      481 tgcgtgcctc ggaaacagcc agcgtagttt tcgaagattg ttttgttccc gacgagaact
      541 tgctcggtga ggaaggcaat ggctttgtta atgccatgga gatccttgat ggcggcagaa
      601 tttcgatcgc ggcgttagct gttggcatcg cacagggcgc gttcgaatca gcggtccgtt
      661 atgcgaaaga gcgtcagcag tttggcaagc ctatctcaga atttcaggca atccagttta
      721 agttggcaac aatggcgacc cagattgatg ctgccaggtt gctgatgtat cgcgcagcct
      781 cgttgaagga tcaagggaag aagacgacga aggagtcgtc aatggcaaaa ctctttgctt
      841 ctgagatcag cgtggaggtt tgcgaagaag cgattcagat acacggcggc tacggctata
      901 ccaaagacta ccccgcagag aagtactggc gcgactccaa gctttgcaca atcggcgaag
      961 gcacttcaga gattcaacga ataatcatcg ctcgggaagt tttgcggcag ttctgattct
     1021 attgagatgg tgtcggcagc aaatagtttg agcgagcgtg tcagtgctgg agaagcagcg
     1081 gccgtcgcca gggctatctc aaaaatcgag gatggatctt ctgacgcggc tgggctgatg
     1141 aagcacatct atcagtcgtc tcgtggtggt ctggtaatcg gtatcaccgg tgcaccaggg
     1201 gccggcaaat cttcattagt cgacaagcta gcgttgcact accgtggggc cgatgagcgt
     1261 gtgggcatcg tatgcgtcga tccttcgagt cctttttcag gcggcgccat tcttggcgat
     1321 cgcatcagaa tgcagacttt gggactcgac ccgggagtct tcattcgttc gatggccacg
     1381 cgtgggaatc tgggtgggct gtcgcgagca accgtcgatg cagtggcaat acttgatgcc
     1441 gcaggatacg cgaagataat cgtggagaca gtgggagtcg ggcaggacga ggttgaaata
     1501 gtcaaagctg ctgaggtctc tgtggttgtt ctggttcccg gaatgggtga cgacattcaa
     1561 gccatcaaag cgggaataat ggagattggc gacatcttcg taatcaataa ggccgatcgc
     1621 gacggcgtct attccaccga aaaggagctt gagtcgttgc tgtcgttgtc tgctcgagcg
     1681 gatggttggg atcctccgat tgtgaagacg gtggccacgg aaagccgtgg aatttctgaa
     1741 ctggccgagg cgattgaacg attttgccaa gtccaaagaa gtgccgacat gactagtgag
     1801 cggcggcggg caattgcgcg ctggcgaatt gtcgagttgt tgagggagcg tcttctcgcc
     1861 tcggccctag aatcgaaggg ctcggaagag gtgctggaac g
//
LOCUS       DATCGC010001782         1181 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_125772, whole genome shotgun sequence.
ACCESSION   DATCGC010001782 DATCGC010000000
VERSION     DATCGC010001782.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1181)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1181)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1181
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125772"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1181)
                     /locus_tag="VIJ87_17045"
     CDS             complement(<1..>1181)
                     /locus_tag="VIJ87_17045"
                     /inference="COORDINATES: protein motif:HMM:NF020671.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0001514 - selenocysteine incorporation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA-binding winged helix domain-containing
                     protein"
                     /protein_id="HEY5446137.1"
                     /translation="SVRVRGAQVHGKAVEKARAGQRTAVNLAGVDVEQLERGMVLTEP
                     KTLHPTQIIDARIDVLANASRGVRSRSRIRLHIGATEVLGRVRVLDQPAEISPGHSAL
                     AQLRLEVPIVAVHNDRFIIRSYSPAETIAGGVVLDPLASKHRGKEIEKTRQRLNRLLS
                     TSATEKLAAFVESSSLRGLRIEDLVAATGWKREVVTQTNSQAQKEGTIVEAGGILLFR
                     ESFERLSRNVLNELESYHKREPLARGMLRETLREKVFAHSHPELFSGVLGKLESSGQV
                     VSEKDIVRVSTHRVDLSDHDLRLREKLEQTFIDSGIESPSIDEAMTRAGVTAPMRLAG
                     RKILQLLIDDRTLVRVQNEMFVHKGVLEELKGKLLAYAARNEPERLIDVAGFKDLAGV
                     SR"
BASE COUNT          273 a          346 c          286 g          276 t
ORIGIN      
        1 cgcgacaccc cggcgagatc cttaaagcct gcgacatcta tcaagcgctc aggttcgtta
       61 cgagcagcgt aagccagcaa cttccctttc aactcttcca acactccctt gtgcacaaac
      121 atttcgttct gcactcggac cagggtgcga tcgtcaatga gtagttgcag gatctttcga
      181 cctgctaaac gcatcggcgc ggttacgcct gcgcgtgtca ttgcctcgtc gatggaaggc
      241 gactcaatac cagagtctat gaacgtctgt tcaagcttct cgcgcaatcg caagtcgtga
      301 tcggagaggt ccacccgatg agttgaaact cgaacaatat ctttttcaga aacgacttga
      361 cccgacgact cgagttttcc gagaactcca ctaaacaact ccgggtgtga atgcgcaaaa
      421 accttctcac gcagcgtctc gcgcaacatc ccgcgggcga gtggctcacg cttgtgatag
      481 ctctcaagtt cgttcaagac atttctggac aaacgctcga agctttcgcg aaacaacaaa
      541 atgccaccag cttcaacaat cgtcccttct ttctgcgcct gggaattagt ttgggttacg
      601 acttcacgct tccaacccgt ggccgcaaca agatcctcga ttctcaaacc gcgcaacgac
      661 gatgattcaa caaatgcggc cagcttttcg gttgcgctgg tactcaataa gcggttgagc
      721 cgctgtcgcg tcttttcaat ctctttgcca cgatgtttgg aggccagcgg atcgagcacg
      781 acgccaccag cgatagtttc tgccggtgaa taggagcgaa taatgaaccg atcgttgtgc
      841 acagcgacta taggaacttc aagtcgaagc tgcgccaggg ctgagtgtcc tggagaaatc
      901 tcggctggtt gatccagcac tcgaacgcgc cccaatacct cagtcgcacc aatatgcaaa
      961 cgaatgcgtg atcgagacct cacgccccta ctggcgtttg ccaacacatc aattcgcgcg
     1021 tcgatgattt gagtcggatg gagagttttg ggttcggtca ggaccatgcc tcgctcaagt
     1081 tgttcgacgt cgacacctgc gagattcaca gccgtccgtt ggcctgcccg ggctttctcg
     1141 acagcctttc catgaacttg agctccacgt actctgacgc t
//
LOCUS       DATCGC010001783         1711 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_291756, whole genome shotgun sequence.
ACCESSION   DATCGC010001783 DATCGC010000000
VERSION     DATCGC010001783.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1711)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1711)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1711
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291756"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1260
                     /gene="hemL"
                     /locus_tag="VIJ87_17050"
     CDS             <1..1260
                     /gene="hemL"
                     /locus_tag="VIJ87_17050"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: protein motif:HMM:NF000818.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0042286 - glutamate-1-semialdehyde
                     2,1-aminomutase activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HEY5446138.1"
                     /translation="FAQAIELMPGGVNSPVRAFRGVGGTPLFIKSASGATMTDADGRT
                     YIDYVGSWGPMILGHSDPEIVEALKEVVARGTSFGAPNELEVELAEEVIDAVPSIEMV
                     RMVNSGTEATMSAIRLARGVTRRTKLIKFEGCYHGHGDSLLVKAGSGVATLGLPDSPG
                     VPASLAANTITVPFNNPTALAQAFSEQQDIAAVIIEPVVGNMGCVPPKTGYLQAVREL
                     CTKNNALLIFDEVMTGFRVARGGAQERYKIHPDITTLGKIIGGGLPVGAYGGSKELMR
                     NIAPAGPIYQAGTLSGNPLSMTAGIVTLRRLRDTAVYRQLEQASQRLCNGLRLAAQDA
                     KVKSTVNRVGSMWTGFFADEEVVDWSTADKCDRQKYGKFFHAMLDQGVYLAPSQFEAA
                     FVSLAHSDDIIDRTIEAARRAFATLER"
     gene            complement(1249..>1711)
                     /locus_tag="VIJ87_17055"
     CDS             complement(1249..>1711)
                     /locus_tag="VIJ87_17055"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEY5446139.1"
                     /translation="RVDLNEALDRSIDLVSERIREKNTTVEKRFSDESLVGTWDADQL
                     RQVFVNVIANAVDAGPENASISIQTEHHHSNNDVPSAVKRYARIMIADHGKGMDKTTR
                     DRIFEPFFSTKKRGTGLGLAIVKQIVELHDGKINVESEPGEGSKFIIDLPL"
BASE COUNT          389 a          440 c          471 g          411 t
ORIGIN      
        1 tttgcacagg cgatcgagtt aatgcctggc ggcgttaatt cacctgtccg tgcttttcga
       61 ggagtgggtg gcactccgct attcatcaag agtgcttccg gcgcaacgat gactgacgcc
      121 gatggccgga catacatcga ttacgtcggt tcctgggggc cgatgattct cggccattcg
      181 gatccggaga tcgtggaggc gctcaaggag gttgtcgctc gcggcacaag cttcggcgca
      241 ccaaacgaac tagaagttga attggctgaa gaagtgattg atgcagttcc ttctattgaa
      301 atggtgcgca tggtaaatag cggaacggaa gccacgatgt ctgccatccg cctggctcga
      361 ggtgtcacta gaaggacgaa gctgatcaaa tttgaaggtt gttatcacgg tcatggcgac
      421 agccttctcg tcaaagccgg ctcgggtgtc gcaacgcttg ggctacctga cagtccgggc
      481 gtcccggcat cactcgccgc aaacacaatc acggttcctt tcaacaatcc gaccgcactt
      541 gcgcaggctt tcagtgaaca gcaagacatc gcggcggtga tcatcgaacc cgtggtcggc
      601 aatatgggtt gcgttccacc gaaaacagga tacctgcagg cggtgcgtga gctttgcacg
      661 aagaacaatg cgttactcat cttcgatgaa gtaatgactg gttttcgtgt tgctcgtggt
      721 ggcgcgcagg agcgctacaa gattcatcca gacattacga cactgggcaa aataatcgga
      781 ggcggacttc cggttggcgc atatggtggc agcaaagagt tgatgcgaaa catcgcgcct
      841 gccggcccga tctaccaggc aggaactttg tcaggcaatc cactatcgat gactgctgga
      901 attgtgacgc tccggagact gcgagacacg gctgtttacc gccaactaga acaagcatcg
      961 caaaggctct gcaatgggct gaggctggcg gcgcaggacg caaaggtaaa aagcaccgtc
     1021 aaccgagtgg gctcgatgtg gactggattc tttgccgatg aagaggtcgt agactggagt
     1081 acagctgata agtgtgacag acagaagtat ggaaaattct ttcacgcgat gctcgaccag
     1141 ggggtctatc ttgcgccttc gcagtttgaa gcggcgtttg tcagcctcgc ccactctgac
     1201 gacattattg accggacgat tgaggcggcg cgcagagctt ttgcgacgtt agagcggtaa
     1261 gtcgatgatg aacttcgagc cttcaccggg ttcactctca acattaatct tcccatcgtg
     1321 cagctcaaca atctgcttca cgattgcgag gcccagtcct gttccgcgtt tcttggttga
     1381 gaagaacggc tcaaagattc ggtcacgcgt tgtcttgtcc atacccttcc cgtgatctgc
     1441 aatcatgatc cgggcataac gttttacagc cgaaggaacg tcgttattgc tgtggtggtg
     1501 ttcagtttga attgagatcg atgcgttttc cggccctgca tctacggcat tcgcaatcac
     1561 attgacaaat acttgtcgca attgatcggc gtcccaggtt ccaaccaacg attcgtcact
     1621 aaatcgtttt tctacagttg tattcttttc tcgtatccgc tcgctgacaa gatcgatgct
     1681 gcgatccaac gcctcattca ggtcaaccct t
//
LOCUS       DATCGC010001784         1170 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_59148, whole genome shotgun sequence.
ACCESSION   DATCGC010001784 DATCGC010000000
VERSION     DATCGC010001784.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1170)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1170
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_59148"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(104..>1170)
                     /locus_tag="VIJ87_17060"
     CDS             complement(104..>1170)
                     /locus_tag="VIJ87_17060"
                     /inference="COORDINATES: protein motif:HMM:NF014628.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0019516 - lactate oxidation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="lactate utilization protein B"
                     /protein_id="HEY5446140.1"
                     /translation="ETDLGEYIIQLAEETPSHIIVPAIHKTKRQIAELFTEELGMAPT
                     DDVDKLTRTAREQLRNRFAAADIGISGVNFGIAETGTIVILENEGNIRLTTSLPRVHI
                     AVMGIEKILPRFADLDIFLKLLPRSGTGQRLTTYQSFITGTKTDKNAEGPEELHVVML
                     DNGRSRMLAHPVTRQSLACIRCGACLNACPVYQQIGGHAYGSVYPGPIGAVITPQLMG
                     LEKTQQLPYASSLCGACREVCPVKIDIPRLLLHLRSEITEKSAPNVTSANPRTGERLA
                     FKVWQATMTRPWLYELSGKLGRLFQGLVVKNGRIGVLKGPARLATPLTAWTSGRDLRP
                     IEQQSFRELWSKELGQKKKD"
BASE COUNT          269 a          327 c          287 g          287 t
ORIGIN      
        1 taggaaagcg gccaagccgc gaacccaatt gctttccaac accaggactc acgagtttct
       61 aagcagaccc aaagaagtcg cgattatcac agtgcaatgt aacctagtct tttttcttct
      121 gccccagctc tttactccag agttcacgaa aactctgttg ctcaatgggc cgcagatcgc
      181 gaccgctggt ccacgcagtc aaaggtgttg ccaaccttgc gggacctttc agcacgccga
      241 tcctgccgtt cttgaccacg aggccctgaa agagtcgccc gagctttccg ctcaactcat
      301 acaaccacgg cctcgtcatt gttgcttgcc aaactttgaa ggccagtcgt tcaccagtgc
      361 ggggattggc tgaagtaacg ttgggcgctg atttctcagt tatttcgctt ctcaggtgca
      421 gaagtagacg tgggatatca atcttaaccg gacaaacttc gcgacatgct ccacacaagc
      481 tcgacgcgta aggtagctgt tgagtttttt ccagacccat caactgcgga gtgatcaccg
      541 caccgattgg gccaggataa accgagccgt atgcgtgtcc accgatttgc tgatacacag
      601 gacaagcatt caaacaggcg ccacaccgga tgcacgccag cgactgcctc gtaaccggat
      661 gcgcaagcat ccgcgaacgg ccattgtcca acatgacaac gtgcaactct tcgggacctt
      721 ctgcattttt gtctgtcttt gttccagtga taaacgactg atatgtcgtc agcctttgac
      781 cggtacctga gcgtggcaac agttttagaa agatgtcgag atccgcaaag cgcggcaaga
      841 tcttttcaat tcccatcacg gcgatgtgca cgcgcggcaa actagtcgtc aaacgaatgt
      901 tgccctcgtt ttcaagaatt acgatcgtgc cggtttctgc gatgccaaag ttgacgccac
      961 tgattccaat atcagcggcg gcaaatcgat tccgaagctg ttccctggct gtgcgcgtta
     1021 acttatcgac gtcgtcggtc ggcgccatcc cgagttcctc ggtaaacaac tcagctatct
     1081 gtcgctttgt tttgtgaatt gcgggcacga tgatgtgcga aggcgtttct tcggcgagtt
     1141 gaatgatgta ctcacccagg tctgtttcga
//
LOCUS       DATCGC010001785         1134 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_125856, whole genome shotgun sequence.
ACCESSION   DATCGC010001785 DATCGC010000000
VERSION     DATCGC010001785.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1134)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1134)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1134
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125856"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1134
                     /locus_tag="VIJ87_17065"
     CDS             <1..>1134
                     /locus_tag="VIJ87_17065"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="M1 family aminopeptidase"
                     /protein_id="HEY5446141.1"
                     /translation="AHSSLLSGPEVWTAFYSLDDYQRGSVEYSDKNDLIDIQNYDMVL
                     DLRDHKKHLNLKSRIDAQALATFRVLDLKVGEDLSDDDDWRLNKQLRVKSLKVNGNDA
                     PFVQEDWEGGFAVFLSDPISARSKFVLEIELDGDFIEDANDEYSNCHYPRSNQSWFPR
                     HGYLDRATFNLTYRHPKKLHIASSGLRISEDPDPEDKDAVVTKYQMAQPVPLVTFALA
                     PFQRHADTIKWDNGAAPTPLEFNSLSSERKAVNEKFILQEMSNSVRYFNALFGAYPYP
                     AFSAALHPFGFGQGFPSLLMIPSADDGRKQTYQFIAHETAHQWWGGIVAWRSYRDQWL
                     SEGFAEYSGILFTGRRLNVEAQNDLLRWTRNSLTEPPSTVTGL"
BASE COUNT          277 a          282 c          287 g          288 t
ORIGIN      
        1 atgctcacag ctcgttgcta agtggccctg aagtgtggac tgctttctat tcgcttgatg
       61 actaccaacg gggcagcgtc gaatactctg acaaaaatga cctcatcgac attcagaact
      121 acgacatggt tctcgacctg cgagatcaca agaagcacct caatctcaag tcacgcatcg
      181 atgctcaggc gctagcaaca tttcgtgttc tcgatctcaa ggtcggagag gacttgtctg
      241 acgacgacga ttggcggctc aacaaacagt tgcgagtaaa gtcgttaaaa gttaacggaa
      301 acgatgcgcc gttcgtacag gaagattggg aaggcggctt tgctgttttt ctttcagacc
      361 cgatttcggc gcgatcgaag tttgttttag agatagagct tgacggagat ttcatcgagg
      421 atgcgaacga cgaatatagc aactgtcact atccgcgttc gaatcaatcc tggtttcccc
      481 gccacggcta cctcgatcgc gcgacattca atctaactta tcgccatcct aaaaaacttc
      541 acatcgcaag ttctggtctt cgcattagcg aagatcctga tccggaagac aaggacgcag
      601 ttgtcactaa gtatcaaatg gctcagcctg taccgctcgt gacttttgcg ttggcaccat
      661 ttcaacgtca cgcggacacg atcaagtggg acaacggtgc ggcgccgaca ccgcttgagt
      721 tcaactcatt gtcgagtgaa aggaaggcag tcaatgagaa gttcattctc caggaaatga
      781 gtaattcagt tcgttacttc aacgcgctgt ttggcgctta tccatatcca gctttcagcg
      841 cagcgcttca cccttttggt tttggacaag gttttccttc cttgttgatg attccgtccg
      901 ccgatgatgg gaggaaacaa acctatcagt ttattgctca tgaaaccgcg catcagtggt
      961 ggggcggaat tgtcgcgtgg cgttcgtatc gcgatcagtg gctcagtgaa gggtttgctg
     1021 agtattcagg aatactcttc actggtaggc gactgaacgt cgaggcccag aatgatctct
     1081 tgcgctggac acgcaattca ttgacggaac caccctcgac ggtaacgggg ctcg
//
LOCUS       DATCGC010001786         1191 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_360106, whole genome shotgun sequence.
ACCESSION   DATCGC010001786 DATCGC010000000
VERSION     DATCGC010001786.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1191
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_360106"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            12..>1191
                     /locus_tag="VIJ87_17070"
     CDS             12..>1191
                     /locus_tag="VIJ87_17070"
                     /inference="COORDINATES: protein motif:HMM:NF012581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proton-conducting transporter membrane subunit"
                     /protein_id="HEY5446142.1"
                     /translation="MIVRCSAIFVHAPTAMFIVAVIGGATALFAATIGLAQNDIKKVL
                     AYSTISQLGYMFLACGVGAFVAAIFHVITHAFFKALLFLGSGSVIHGMHHEQDMRRMG
                     GLKKYMPITFATMFTGWLAISGIPIFAGFFSKDEILWKTWSAGLPGGFNKVLWGIGAL
                     TALLTAVYMTRMMVMTFWGNERFREQHDEQHDLKHVHHGDDHGHHGAVEPHESPWIMT
                     VPLIVLAVLSTIGGFIGVPYALSSFVSDKNLNFIEQTLEPVIAKSPGAAGHETKAEVI
                     HPPQEIDGAPAIHPLEAVGAAHETHSAEEISAERLLALLSVLIAATGIGIGWVVFKKR
                     PLLQMPGILENKYYVDEIYDAALIHPIEIVSREGLWKILDVGVIDGLLHSIGEAVTEA
                     G"
BASE COUNT          276 a          313 c          311 g          291 t
ORIGIN      
        1 ccggtatcta tatgatcgtt cgctgctcgg ccatttttgt tcatgctccg acagcaatgt
       61 tcatcgttgc ggtaatcggc ggggcaactg cgctgtttgc cgccacgatc ggcctcgcac
      121 aaaacgacat caaaaaagtt ctcgcctatt cgacgatttc gcagctcggc tacatgtttc
      181 tcgcttgtgg cgtcggcgcc tttgttgccg caatcttcca cgttattaca cacgcgtttt
      241 tcaaagcact actcttcctc ggttccggct cggtgattca tggaatgcac cacgagcagg
      301 acatgcgacg aatgggcggc ttgaagaaat acatgcccat cacgttcgcg acaatgttca
      361 ctggatggtt agcaatctcc ggcattccaa tctttgccgg tttcttttcc aaggacgaga
      421 ttctctggaa gacgtggagc gcaggcttgc cgggcggatt caacaaagtt ctatggggca
      481 ttggcgcact cacagcattg ctcacggctg tctacatgac acgcatgatg gtcatgacgt
      541 tttggggcaa cgaacggttt agagagcaac acgacgaaca acatgacctc aagcatgtgc
      601 atcatggaga cgaccatgga catcacggcg cagttgagcc acacgagtcg ccatggatca
      661 tgacagtgcc tttgattgtg ctggcagtgc tttcaacgat aggcggattc atcggcgttc
      721 cctatgccct cagctcgttt gttagtgaca agaacctgaa ctttatcgaa cagacactgg
      781 aaccagttat cgcgaagtcg ccaggtgccg caggacatga gaccaaggcc gaagtgattc
      841 accctccgca ggagattgat ggcgcacctg caatccatcc actggaagcg gtaggtgctg
      901 cacatgagac tcactcagcc gaagagataa gtgctgagcg cttgcttgcg cttctctctg
      961 tgctaatcgc tgcgaccgga attggcattg gttgggttgt cttcaagaaa cggccgctac
     1021 tgcaaatgcc tgggattctt gaaaacaaat actacgtaga cgaaatctac gacgccgcac
     1081 ttattcaccc gatcgaaatc gtatctcgtg agggactctg gaagattctc gacgttggcg
     1141 tgatcgatgg tctgctgcat tcaatcggag aagctgtcac tgaagctgga c
//
LOCUS       DATCGC010001787         1228 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_93413, whole genome shotgun sequence.
ACCESSION   DATCGC010001787 DATCGC010000000
VERSION     DATCGC010001787.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1228)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1228)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1228
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93413"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            234..818
                     /locus_tag="VIJ87_17075"
     CDS             234..818
                     /locus_tag="VIJ87_17075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446143.1"
                     /translation="MSELIAFVFRDQYRAPEVLNELRRRDWAWVKDLEDAMVITLNDA
                     GQARGHFSVDLSKCGACGWARFWSSLLDRTLFVPRTAGLIEAANGLCPSSRAMSDARS
                     DDSGESKEAKWWSESLRDSVNFQRDVAALMAPHGSAIFLLLRAGNAPVVLKQLRNYGD
                     TIVHTSVSSEQDNKMLAMLAEFGEPDHQYLTNSV"
BASE COUNT          308 a          334 c          306 g          280 t
ORIGIN      
        1 cctgaacaat tcatgcctca ctgctcaaaa ttagtcatgt cgacgcctcg ttttacagga
       61 tgcccctagc ttgaaataca gactccaccc tattcctgca cgcaaccaga caaactattc
      121 ttcctaatcg aacgcttggc aagctcagag ccaacaggtt tcgcatacgc cctgtagtaa
      181 agaatcccca attactcagc tgccaggtcg aaaatgattt cgagagtaaa ttcgtgagcg
      241 aactcatagc attcgtgttt cgagatcaat accgggcgcc cgaggttctc aacgagctcc
      301 ggcgccgtga ttgggcctgg gtgaaagacc tggaggatgc aatggtgatt accttgaacg
      361 acgccggcca agctcgaggt cacttcagtg ttgacctttc aaagtgcgga gcctgtggct
      421 gggcaaggtt ttggagctca cttctggatc gaacactttt tgttccgcga actgcggggt
      481 tgatcgaagc cgcaaatggc ctatgtccct cgtcacgagc aatgtcggac gcccgaagcg
      541 atgactcagg tgaaagcaag gaggcaaagt ggtggagcga atccctgcga gattcagtga
      601 acttccagcg cgatgtggca gcgttaatgg ccccccatgg atcagcaatc tttcttctct
      661 tacgagcagg aaacgctcct gtggtgctca agcaattgcg caattatggt gacactattg
      721 tccatacctc tgtcagctct gaacaggaca acaagatgct cgccatgctt gccgagtttg
      781 gagaacccga ccaccagtac ttaacaaact cagtttgagg tgtgtggtgc agtgcaaacg
      841 atcaggagga aactgcactg agacgaacac acacttcatg gccgggggag actacggtca
      901 ggggcacccc cggcctcttt agtacggtac gaaatcagtc aattccgcag cccaccaccg
      961 aagatctctc atcttcaact aaagtcgaca acctacgcca tttctcgccg tcagtagtga
     1021 aggtgcatta gaatctccga ctgactttcg gccaagacgc agagtctcgt gcctaccaaa
     1081 catgacaaga ctcgatttca gcgatctaat cgctccgcat gcgcccgctg acttctttga
     1141 tcactactgg caaaaggctg cgctcctgat caaaggagac caggcggatc ggtttgaatc
     1201 tctgctgcct gtgaatggta ttcaaggc
//
LOCUS       DATCGC010001788         1059 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_257678, whole genome shotgun sequence.
ACCESSION   DATCGC010001788 DATCGC010000000
VERSION     DATCGC010001788.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1059)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1059)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1059
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257678"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            339..>1059
                     /locus_tag="VIJ87_17080"
     CDS             339..>1059
                     /locus_tag="VIJ87_17080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446144.1"
                     /translation="MFPDKVRKSSQRSYGNRRRRIPQFLLTKTALISLTICIVTIVSV
                     YVVFASTVIPTTTPYNQNFDSMGNPGLTPALSFLPADFRIDQPAAVRTLGTFSAATTR
                     TNNVAGASLASNATNGTYNFGSGTTTFGGTDRAAGFLSSGAGTLSGNLYAELINTTGK
                     DLAALQISYNVEKYRNGSNPSGFRIQLYYSSNGTNWTSAGPEFLTSFPADADDNGFAT
                     APGATVPVNKAISVGIANQAKF"
BASE COUNT          285 a          281 c          230 g          263 t
ORIGIN      
        1 tacacggtta acggaacctg tccttaacca gtcaatcaag gccgaaaaaa agaaggggca
       61 ctggtcaatc cagtgcccct tttctttttt cctcccaaag gttgggccaa gaatcttcca
      121 tcgaactgac tgattctgtg cggtcacatt ctgcctatat gaccgattct agtcagcctg
      181 acgtgaaact ccttttgctt aaataatagc tattgacccg tgttttcggg cttgttacaa
      241 aagatcgaag tttgcccttg ccggcaaaaa agtatctcaa ccggtatccc tctcacaatg
      301 cggaaaagcg ttagccaagt gttttggagg atacctctat gtttcccgat aaggtccgaa
      361 aaagtagtca acggtcgtat ggaaatcgtc gacgaagaat tccacaattc ctactcacaa
      421 aaactgcgct aatcagtctc acgatctgca ttgtgacaat cgtttcggtt tacgttgtct
      481 ttgcttcgac cgtaatacca actacgactc cgtacaatca gaactttgat agtatgggta
      541 accctggact aacgccggcg ttatcatttc ttcctgccga ttttcgaatt gatcaacccg
      601 ccgccgttcg cacgctcgga accttctcag ctgccacaac tcgaaccaac aatgtcgctg
      661 gcgcaagctt ggctagcaac gcaacgaacg gaacgtataa ctttggatcc ggaacaacca
      721 cctttggagg aacggatcga gctgccggtt ttctgtcttc cggcgcagga acgctaagcg
      781 gaaacctgta tgcggaacta atcaacacca ccggaaaaga ccttgccgcc cttcagatct
      841 cctacaacgt tgaaaagtat cggaatggat caaaccctag tggcttcaga atccagctct
      901 actactcaag taatgggacg aattggacca gcgctggtcc tgaattcctg actagttttc
      961 cagcggatgc tgatgacaac ggctttgcta cagctcccgg ggcaacagtc ccagtcaaca
     1021 aagcgatcag cgtagggatc gcaaatcaag caaagtttt
//
LOCUS       DATCGC010001789         1484 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_225081, whole genome shotgun sequence.
ACCESSION   DATCGC010001789 DATCGC010000000
VERSION     DATCGC010001789.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1484)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1484)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1484
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_225081"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(192..443)
                     /locus_tag="VIJ87_17085"
     CDS             complement(192..443)
                     /locus_tag="VIJ87_17085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446145.1"
                     /translation="MKVTVGRYGRMSELNAIYNGNLGVMAGPTLKRQGYTFQTIPTSP
                     SDAQLTAGYRVAATGVGPDGVTPFIFLVDESGIISQLSP"
     gene            complement(895..>1484)
                     /locus_tag="VIJ87_17090"
     CDS             complement(895..>1484)
                     /locus_tag="VIJ87_17090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446146.1"
                     /translation="HNGYLGLLMKLVLHLVILGSLVSVCASTSLGQKPDSVSRGAGLT
                     LSANVIPASILELSSKSNNIEELETTSATVCALRVVLANSRTADVVKQTTGGRLLMTR
                     VEFLVRFSGFKEETSTVVITVTAVDDKSGHLSLAEGASEESFRTLQPGQVIKLERVKS
                     GARIVRYVGFLVDETVSEDSQKNGLGASLTYELIH"
BASE COUNT          375 a          365 c          386 g          358 t
ORIGIN      
        1 gcgattggct ggttacgccg ttgcgcacag gaccagtctg tgccgctgca gagccagcaa
       61 aggcaaagag cccaatcagg gcgaggaaca ggggaagttt attcttaagg gacatcatta
      121 ttctcctatg tggaaggttg agtttgagaa gcttggttgg gaggtaaatt ccatccaaat
      181 aaagctttca tttagggtga aagctggctg attatgcctg actcgtcgac gagaaaaata
      241 aatggggtaa cgccatccgg gccgacaccg gtggcggcaa ctcggtaacc agcggtcaat
      301 tgggcatctg acggagatgt tggaatagtc tggaaggtat aaccctgtcg tttcaaagtg
      361 ggtcccgcca tcacacccaa gtttccgttg tagatagcat tcaactccga catgcgacca
      421 taacgcccga ctgttacttt catagttgct tgattgtcat gtatcacccg aaggcatgct
      481 tgggccgccg cttcctgagc agctgctctc gatcctagga gggacggaac cgcaatcgcg
      541 caaataatgc cgattatcgc aactacgatt agtaactcga taagggagaa tccacgggtg
      601 ttaggtgagt acataaattt agaaagcgat gggcgtctgg cgaaaattct gaagaagatc
      661 gaatcgaggt tctttggcac cctatccgag agtggaaagg gctttgcgga agtgaccagc
      721 ggttaacttt cagcagttcg gatgcctcgc ccgcacggca gacgctatta tacacatcgt
      781 tgaactcttg gcaacaactt ttaactcaac ttgaacgatc ctatcgattt gtgtagggaa
      841 atcgggcgac cgagggcctg aaggaagcag tttttcttct cgaatctgag gacgctaatg
      901 gatcagttcg tacgttagtg acgctccaag accattcttt tgggaatcct cactcaccgt
      961 ctcgtccacc aagaacccga cgtatcgaac aatcctcgca ccgcttttga ctctctcaag
     1021 tttgatgact tgtcccggtt ggagggttct gaaactctct tcgctggcgc cctcagctaa
     1081 agagagatgg ccgcttttat cgtcaactgc ggttacggtt ataacaacgg tggaggtttc
     1141 ctccttaaac cctgagaagc gaaccaggaa ttccactctg gtcatgagga gccggccccc
     1201 agtcgtttgc tttaccacat cggccgtccg cgaattggcg agaacgactc tgagtgcaca
     1261 caccgtcgca gatgtcgttt ccaattcctc aatgttgttt gatttggagg ataactcgag
     1321 gattgaagca ggtattacat tggcactcaa tgtcaaacct gcgccgcgac tcacgctgtc
     1381 gggcttttga cccagtgacg tggaagcgca gacagacacc agtgacccaa gaatcacaag
     1441 atgcaaaacg agtttcatca gcagacccaa gtagccgtta tgta
//
LOCUS       DATCGC010001790         1563 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_390448, whole genome shotgun sequence.
ACCESSION   DATCGC010001790 DATCGC010000000
VERSION     DATCGC010001790.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1563
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_390448"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..876)
                     /locus_tag="VIJ87_17095"
     CDS             complement(<1..876)
                     /locus_tag="VIJ87_17095"
                     /inference="COORDINATES: protein motif:HMM:NF012550.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HEY5446147.1"
                     /translation="MPDGPFGSLQTFASGSGVAGKFYSLPQLEKSGVGPISRLPISIR
                     IVLESVLRNCDGEKITEANVKALANWQPNAQRVEEIPFVVARVLLQDFTGVPLLVDLA
                     AMRSAVARLNKNTAIIEPLVPVDLVIDHSVQVDFSSTKDALDKNMEMEFKRNRSRYQF
                     LKWGTQGFDGFRVIPPGIGICHQVNLEYLAKNVWEKEVYFPDTLVGTDSHTTMINGLG
                     IVGWGVGGIEAEAAMLGQPVYFLTPDVVGVNLTGTLEEGVTATDLVLRVTEMMRAAKV
                     VGKFVEFHGEGAASLP"
     gene            1182..>1563
                     /locus_tag="VIJ87_17100"
     CDS             1182..>1563
                     /locus_tag="VIJ87_17100"
                     /inference="COORDINATES: protein motif:HMM:NF039411.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6335 family protein"
                     /protein_id="HEY5446148.1"
                     /translation="MPKKHAEEFSYLANNPDYVPDPDIEEFMEEEISRAPKDPELLAH
                     RLRNNTAASPRDAGGDLDANWEDVNESGSETVAGDNPTPDQSLVEENAMAMGVSYEDN
                     EELEFIDKIEKRDRDRFELEEGSKS"
BASE COUNT          433 a          398 c          377 g          355 t
ORIGIN      
        1 cggcaaactt gctgcgcctt cgccgtggaa ctcaacaaac tttcccacga cctttgccgc
       61 acgcatcatc tccgtcacac gtagaaccaa atctgtcgct gtaacacctt cttcgagagt
      121 tccagtgaga ttgacgccga caacatcggg cgtgaggaaa tacactggct ggcccaacat
      181 tgctgcctcg gcttcaattc cgccaacgcc ccaaccaacg atacccaggc cattgatcat
      241 cgtcgtatgc gaatctgttc ccaccagggt atcggggaaa tagacttctt tttcccaaac
      301 attcttggcg aggtactcca gattcacctg atgacagatt ccaattcctg gcggaatcac
      361 gcgaaaacca tcaaagcctt gcgtgcccca cttcaagaac tggtagcgcg accggttgcg
      421 cttgaactcc atctccatgt tcttgtcgag cgcatctttt gtactggaga agtcgacctg
      481 gaccgaatgg tcaatcacta aatcaacggg aacgagcggt tcaattatgg cggtgttctt
      541 attgaggcgc gcaacggcgg agcgcatagc tgcaagatcc actagtaaag gcacgccagt
      601 aaagtcctgc aacagaacgc gcgcgaccac aaaggggatc tcctcaacgc gttgagcatt
      661 cggttgccag ttggcgagag ccttaacgtt ggcttccgtt attttttccc cgtcacagtt
      721 gcgaagaacc gactctagaa caattcgaat actgatcggc aagcgcgaaa tcgggccaac
      781 gccactcttt tcaagttgcg gcaaagaata aaatttaccc gcaacaccgg aacctgaggc
      841 gaatgtttgc aaagaaccga acggaccatc tggcatagaa gtgcttaaat cctttcccgg
      901 aaaatgagac aaatcgaatt cgtctctagc gatgaagtgt gtcgtgtgtg gttcaaattg
      961 aagtgtaaag tccacctcat caatcgtcaa gcaagctaac tttatccatt acgcacatta
     1021 gaatgagact attcgttggc tgcttttgat cgcatttgtt atagttcacc taccgagttc
     1081 cccccaaaaa gaagagtcgc ttcagatcgc agagtgttat ctaaactgga tctgagtcgt
     1141 tgatctttcc ccgccataca tcaaggagtg aggaggcttt tatgccgaaa aaacatgcag
     1201 aggagttctc atacctggcc aacaatcccg actatgttcc ggatcccgac attgaagagt
     1261 ttatggaaga ggaaatctct cgagcgccaa aagatcctga gttgttggcg caccgtttga
     1321 gaaacaacac ggcagcatca cctcgagacg cgggtggcga tctggatgcg aattgggaag
     1381 atgtgaacga aagcggttca gaaacagtgg ccggcgacaa ccctacaccg gatcaatcgt
     1441 tagtagaaga aaacgcaatg gcaatgggag tcagctacga agacaacgag gaacttgagt
     1501 ttatcgataa aatagagaaa cgtgatcgcg atcgatttga gttggaagag ggctcgaaat
     1561 cga
//
LOCUS       DATCGC010001791         2435 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_59204, whole genome shotgun sequence.
ACCESSION   DATCGC010001791 DATCGC010000000
VERSION     DATCGC010001791.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2435)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2435)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2435
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_59204"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            20..>2435
                     /locus_tag="VIJ87_17105"
     CDS             20..>2435
                     /locus_tag="VIJ87_17105"
                     /inference="COORDINATES: protein motif:HMM:NF037238.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="neuraminidase-like domain-containing protein"
                     /protein_id="HEY5446149.1"
                     /translation="MIATLATAVGATRELVEELLRVRLRHPENPSRPAIDVFLSPLSD
                     FIDVASLIRKLSADSDATSIGFYLWGKFSQADQLVLRNSGSTFEQMQVILVSVLNPIL
                     NGPSIYDEKRFRRVTLSAETTALDPANAAVTGKDLIRLNRLLLEDAFPLEIAKRRSDD
                     MLFVAGEVAEAGSLLVQGVLLRLYKSALISDALKLSRTDFPLLRKGPTDDTGLSSLDF
                     NSLPVAPTDPTDVAKFEQLLTAFEQLLALVQLRGIARGAGDMLHQYAALNFAHSTAVP
                     WTTAAANQVLKTGLNINVQDVKNAAKQLHITTAEQYRDPIVLKQLIELIVVLKQLGTT
                     MEAVYSSSAPSLTTPNGFASASPNDRDADAARELLRAKYGESQWHDLIKPIADKLRER
                     QRDALLDYLIAQSSLPRASDSNPQLLSGPRLRDANDVYEFYLIDVQTSSCLKTTRLLQ
                     ATGAVQLFIQRLLLNLEHNLSLTEDKRALWDWMHNYRVWEANRKVFLYPENWLLPELR
                     DDKTSTFDKMESAFTEGEPAGELIRAALLGYVEDLGDLAQMNVIAMYADNRTVPDESG
                     KNVVTCTLYVIGRTPDQPYQYHWRSCTNFGSGEMSWSGWEALDLDNANDFIMPFVFEG
                     DLHVAWPVFRETKDEKDESKLWWQVQLAWARHTSKGWVKRKIGEAQVALVERLPNKEA
                     LDSFTFRLKKEVSNLPFGDQTLSQETIGISIYAAGEMGDTTDFTPTFRPDPLLIDVND
                     SDPVPSNSLTKGDWNTYFSVAGVAYEYATVDQATRYRPLSGMTIDIQYWTKSDEFGAT
                     FRNPYST"
BASE COUNT          612 a          616 c          642 g          565 t
ORIGIN      
        1 gctcgccagg gagaacgcag tgattgccac attagcaacc gctgtcggag cgacgcgcga
       61 actggttgaa gagctacttc gcgtgcgact gcgtcatccg gagaacccca gccggccggc
      121 tatcgatgtt ttcctcagtc cgttgagtga cttcatcgat gtcgcaagct taatcagaaa
      181 actgagcgcg gatagcgatg ccacatcgat aggattctat ctctggggga agttctctca
      241 agcggatcag ctcgtattgc gtaattcagg atcaaccttc gaacaaatgc aagtcatttt
      301 ggtttcggtg ctaaatccga tacttaatgg accatcgatc tatgacgaaa agcgtttcag
      361 gcgggtgacg ttgtctgccg aaacaactgc gttagacccg gcaaatgcag ccgtgacagg
      421 caaagatctg attcgactaa atcggttact gttggaggat gcttttccgc tggaaattgc
      481 gaaacgccga tctgatgaca tgttgttcgt cgctggtgag gtcgccgagg cagggagtct
      541 gctggtccaa ggcgtgctgc tgcgcttgta caagtcagcg ttgatctccg atgcgttgaa
      601 actcagccgc acggatttcc cacttcttcg caaagggccg acagacgaca ccggtctgtc
      661 aagcttggat ttcaatagcc tgcccgtcgc acccactgat cccaccgacg tggcaaagtt
      721 cgagcagctc cttacagcat tcgagcaact actcgcgctc gtccaactac gcggaattgc
      781 acgcggcgca ggcgacatgt tgcatcaata cgcagcgctt aactttgccc atagcacagc
      841 tgttccgtgg acaacggcag ctgcgaatca agtactgaag accggtctta acattaacgt
      901 tcaagacgtc aaaaatgccg caaagcagct tcacatcacg acagccgagc aatatcgcga
      961 tccgatcgtc cttaaacagc tgatcgaatt gattgttgtg ctcaagcaac tcggtactac
     1021 gatggaagcg gtttattcca gcagtgctcc atccctcacg acccctaatg gcttcgcgtc
     1081 tgcttcaccg aatgatcgag atgctgatgc agctcgcgag ctgctgcgtg ccaaatatgg
     1141 cgagtcgcaa tggcatgatt tgataaagcc aatcgccgat aagctgcgcg aacgtcaacg
     1201 cgatgcctta ttggactatc tcattgcgca gagttcatta cctcgtgctt ctgattcgaa
     1261 tcctcaactc ttaagcggtc cccgcctgcg cgatgccaac gacgtgtatg aattctatct
     1321 gatcgacgtg cagacaagca gttgtctgaa aactactcgg ctgcttcagg ctacaggagc
     1381 tgtacagctt tttattcaac gacttctcct caacctggaa cataacctgt cgttaactga
     1441 agacaagcgc gcgttgtggg actggatgca taactatcgg gtttgggaag caaatcggaa
     1501 agtgtttctc taccctgaga actggctgct gccggaatta cgcgatgaca agacttcgac
     1561 ctttgacaag atggagagtg cgtttacgga aggagaaccc gctggtgaac tgatacgagc
     1621 agcattgttg ggatatgtag aagatctggg cgatctggcg cagatgaacg tgatcgcgat
     1681 gtatgcggat aaccgaactg tcccagacga atccggcaag aacgtcgtga cttgtacgtt
     1741 gtatgttatc ggccggactc cggatcagcc ataccagtac cattggagat cttgcacaaa
     1801 cttcggtagc ggcgaaatga gttggagtgg ctgggaagcg ttggacttgg acaatgctaa
     1861 tgacttcatt atgccgttcg tgtttgaggg cgacctccat gttgcgtggc cagtttttcg
     1921 agaaacaaaa gacgagaagg acgagagcaa actctggtgg caagtgcagc ttgcctgggc
     1981 acgtcacaca agcaagggct gggtgaagcg gaaaattggc gaggcccaag tcgccctggt
     2041 tgagcggtta cctaacaaag aggctctcga cagttttacg ttcaggctga agaaggaagt
     2101 atctaacctc cccttcggcg accaaacact ttcgcaagag acaattggaa tctccatcta
     2161 cgccgccggc gagatgggtg acacgactga tttcacgcct acattccgac cagatcctct
     2221 ccttattgat gtgaacgaca gcgatccagt tccatcgaat agtctgacca aaggtgattg
     2281 gaatacatac ttctcggtgg caggggtcgc ctatgaatac gccacggtgg atcaggccac
     2341 aagatatcgc ccactaagcg gaatgacgat cgatattcaa tattggacaa aaagcgatga
     2401 gtttggtgca acgtttagga atccatattc gacca
//
LOCUS       DATCGC010001792         1033 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_292056, whole genome shotgun sequence.
ACCESSION   DATCGC010001792 DATCGC010000000
VERSION     DATCGC010001792.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1033)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1033)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1033
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_292056"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1020)
                     /gene="infB"
                     /locus_tag="VIJ87_17110"
     CDS             complement(<1..1020)
                     /gene="infB"
                     /locus_tag="VIJ87_17110"
                     /inference="COORDINATES: protein motif:HMM:TIGR00487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HEY5446150.1"
                     /translation="MPFEEMVAEEEFEELIATDADDVELPRAPVVTVMGHVDHGKTSL
                     LDGIRTTEVAAGEAGGITQHIGAYSVQVPSPDKPGETRRVVFLDTPGHEAFTMMRARG
                     AKATDIVVLVVAADDGVMPQTIEAIEHSRAANVPIIVAINKIDKPDANPDRVRQELAQ
                     QGLSPLDWGGDTEMVQVSAKRRENLDTLLETILLTSDILNLRASPTRLASGVVLEAKL
                     DRGRGAVATVLVQQGTLKVHEPFIVGQISGKVRAMFNDRGEAITEAGPATPVEVLGLQ
                     GVPQAGESFQVVSDITKANSISQHRQMLSRQATLLQTTKRGIEALGESEVKELLVIIK
                     ADVQGS"
BASE COUNT          220 a          290 c          273 g          250 t
ORIGIN      
        1 tgaaccctga acgtcggcct tgatgatcac gagaagttcc ttgacttcgc tttcgccgag
       61 cgcttcaatt ccgcgcttcg ttgtctgcaa cagggtggcc tgtcgactca gcatctgacg
      121 atgttgggaa attgagttcg cctttgtgat gtctgaaaca acctggaagc tttcaccagc
      181 ctgcggcaca ccctgcaaac cgagaacttc aactggagtc gccgggcccg cttccgtgat
      241 tgcttcaccc cgatcattga acatcgcccg aaccttcccg gagatttggc caacgatgaa
      301 tggttcgtga accttgagag tcccttgttg aaccagcacg gttgccacgg caccgcgccc
      361 gcgatccagt ttcgcctcca gcacaacacc cgacgccaaa cgagttggac ttgcccggag
      421 gttgagaatg tcggaggtca gaaggattgt ttcgagcaac gtatcaagat tctcgcgccg
      481 cttggctgag acttgaacca tttcagtgtc gccgccccaa tcgagtgggg aaagaccctg
      541 ttgagcaagt tcttgacgaa cgcgatcggg attggcgtca ggcttgtcga tcttgttgat
      601 ggccacaatg attggaacat tcgccgcgcg tgagtgttca attgcctcaa ttgtttgcgg
      661 cattactccg tcgtcagcgg ctacaactaa cacaacaatg tcagttgctt ttgctccgcg
      721 ggcacgcatc atcgtaaagg cttcgtgacc gggagtgtcg aggaaaacta cgcgtcgagt
      781 ttcgcctggt ttgtctggac tcggaacctg aacgctgtac gcgccgatgt gttgagtaat
      841 accaccggct tcaccagcgg cgacctcggt ggttctgatt ccgtcgagca gcgaagtctt
      901 accgtgatcg acatggccca tgacagtaac tacaggcgct cttggcaatt caacgtcgtc
      961 agcgtcagtt gctatgagtt cttcaaactc ttcttcggcc accatctctt cgaagggcac
     1021 gaaggaaact tca
//
LOCUS       DATCGC010001793         1409 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_423347, whole genome shotgun sequence.
ACCESSION   DATCGC010001793 DATCGC010000000
VERSION     DATCGC010001793.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1409)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1409)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1409
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423347"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(156..254)
                     /locus_tag="VIJ87_17115"
     tRNA            complement(156..254)
                     /locus_tag="VIJ87_17115"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(218..220),aa:Sec,seq:tca)
     gene            581..>1409
                     /locus_tag="VIJ87_17120"
     CDS             581..>1409
                     /locus_tag="VIJ87_17120"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEY5446151.1"
                     /translation="MINFQTSPDRYQHWKLHINGAVATLSMDVAEDKTLNEGYKLKLN
                     SYDLGVDIELADAVQRLRFEHPNVRVVVVTSLKPRIFCAGANIYMLGTSSHVFKVNFC
                     KFTNETRCAIEDDSRHSGRRYLAALNGTASGGGYELAIACDEIYLVDDGNSAVSLPEV
                     PLLGVLPGTGGLTRLVDKRKIRRDRADVFSTLAEGLKGKRAKEWGLIDDTFPTSKFQE
                     GIDSRVQQILTSTSPTATGIKLNPLTFDETENSRKYKYVKVDLHRDQRYADLTIHGPE
                     "
BASE COUNT          347 a          393 c          345 g          324 t
ORIGIN      
        1 tggcagcggc gcgaggtccg atgcccggtg tcatgttcag ctcaacccaa tctctaatca
       61 tgtgaggatt cctttgagtt tcgcattgcg agcgatttca gttacaaaga tcaaaactat
      121 ttaccgagct tgctgtttcc gcactgtttc ggaaatggcg gaggcgtgta ggaatcgaac
      181 ctacctgagc ccgctctcac ggtctcacta acggttttga agaccgcgcc attcaccaga
      241 acagattcgc ctccactcga ggtgaacttt gcctcagcgc ctcaatctgg cggttgctcg
      301 gaggtttgaa accctacgcg ccatcaggct ggactgtcaa gcgagacatg tccgacaggc
      361 ttcagcttgt cgtgtgaatc acatcgatgt ctgcaaacat gaaaatgaac ctcttacata
      421 gggccgcccc gaggcaaagc ctctgctttt ctaagaggcg aacgggaggc ggcatagccg
      481 tataaccgcg ccttctccca tttgacgctt cccacctcga tccgtattat tcgaacgaac
      541 gttcgaacgt gtgcgagcga tcctgaatcc tgaggtctgc atgatcaatt ttcaaacgtc
      601 acccgatcgc taccaacatt ggaagctcca tatcaacggc gccgtagcca cgctttccat
      661 ggatgtagct gaagacaaaa ccctcaacga gggctacaaa ctcaaactca actcttacga
      721 cctcggcgtg gacattgaac tcgctgacgc agtccaacgc cttcggttcg aacacccgaa
      781 tgtgcgcgtc gttgtcgtca ccagtctgaa accacgaatc ttttgtgccg gcgccaacat
      841 ctacatgctt ggcacttcgt cacatgtctt taaggtcaac ttctgcaagt tcacaaacga
      901 gacgcgctgc gcaattgagg atgactcacg ccattccggt cgccgttatc ttgccgcgct
      961 gaacggcact gcatcaggcg ggggttacga actcgccatt gcgtgcgacg aaatctatct
     1021 cgttgatgac ggcaactccg cagtttcact tcccgaagtt ccattgctgg gtgtgttgcc
     1081 aggaacggga ggattaactc gtcttgtcga caagcgaaag atcaggcgcg atcgtgcaga
     1141 tgtgttctca acacttgctg aaggcttgaa aggaaaacgc gcgaaagagt ggggattgat
     1201 tgacgacacg tttccgacga gcaagtttca agagggcatc gactcgcgag tccagcaaat
     1261 cttgacctca acctcgccaa cggcaactgg aatcaagcta aatcctctga ccttcgatga
     1321 gacggaaaac tcacgtaaat acaaatacgt aaaagtagat cttcatcgtg atcagcgcta
     1381 tgccgacctt acgattcacg gacccgagg
//
LOCUS       DATCGC010001794         1409 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_93539, whole genome shotgun sequence.
ACCESSION   DATCGC010001794 DATCGC010000000
VERSION     DATCGC010001794.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1409)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1409)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1409
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93539"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1409
                     /locus_tag="VIJ87_17125"
     rRNA            <1..>1409
                     /locus_tag="VIJ87_17125"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          378 a          325 c          436 g          270 t
ORIGIN      
        1 cgcgtgcctt ttgcataatg agccggctag ttaatctcag tggcaaggtt aagcgaaagc
       61 gagccgcagc gaaagcgagt ccgaaatggg cgacaagtcg ctgggattag acgcgaagcg
      121 aggtgatcta cccttggcca gagtgaagta gaggtaacac tctatggagg ctcgaaccag
      181 tgttggttga aaacagcttg gatgagctga gggtaggggt gaaaggctaa tcaaacttcg
      241 tgattgcccg ttctcttcga aatgccttta ggggcagcct cgggaggtcg gcgttggtgg
      301 tagagaactg gatggactaa ggggcttacc agcttactga atccaaccaa actgcgaatg
      361 ccaacgacac gtatcccggg agtgagacgg tgggggctaa gcttcatcgt cgagagggaa
      421 acagcccaga ctatcggcta aggtcccaaa atctgtgcta agtgggaaag gatctggaga
      481 cgcttagaca accaggaggt tggcttagaa gcagccatcc tttaaagaaa gcgtaatagc
      541 tcactggtca agcggctctg ggccgacaat tcaacggggc tcaagcacag aaccgaagcc
      601 atagattgga acaggatctt cggatcctga caatggtaga agagcgttct caatgcagtg
      661 aagtcagacc gaaaggactg gtggagcgtt gagaagtgac cctgccggca taagtagcga
      721 taagaaaagt gagaatcttt tccgccgtaa gcctaaggtt tcctgaggaa ggttcgtccg
      781 ctcagggtca gtcgggtcct aacgcgaggc cgaaaggcgt agcggatgga tatccggtta
      841 atattccgga actacttgga agacgttatt acgatgggga gacgcaggag gctatgcgag
      901 cccacgattg gacgtgtggg tttaagcctg tagggggact cgcccggcaa atccggtgag
      961 tcacattccc tgaggggcta tagcgagggc cgcaaggccc gcaaagtcgc agacgccacg
     1021 ctgccgagaa aatcctctaa ggagtctttc gggtacccgt accgcaaacc gacacaggta
     1081 ggcgaggaga aaatcctcag gcgcaagtga gaaccctcgt ttaggaactc ggcaaactag
     1141 ccccgtaact tcggaataag gggtgctccg ttaacgtcag gtacctcgcg taccgaagcg
     1201 tgaaggagtt gcaataaaga ggcccaagca actgtttact aaaaacacag gactctgcta
     1261 agtcgaacac gacgtatagg gtctgacgcc tgcccggtgc cggaaggtta aagggagagg
     1321 ttagccgcaa ggcgacgctt cgagctgaag ccccggtaaa cggcggccgt aactataacg
     1381 gtcctaaggt agcgaaattc cttgtcggg
//
LOCUS       DATCGC010001795         1499 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_423364, whole genome shotgun sequence.
ACCESSION   DATCGC010001795 DATCGC010000000
VERSION     DATCGC010001795.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1499)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1499)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1499
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423364"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1314
                     /gene="sppA"
                     /locus_tag="VIJ87_17130"
     CDS             <1..1314
                     /gene="sppA"
                     /locus_tag="VIJ87_17130"
                     /inference="COORDINATES: protein motif:HMM:TIGR00706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HEY5446152.1"
                     /translation="AADVMFFRGSLDKLGIYPDIYQIGKYKSAGDMFTQKTMTDAHRE
                     YVNSLLDDLYGRYVNAIAQARHKTPDEVRTLIDNAPYNSAKAKEAGLVDESLYRDDVE
                     KQIKASLGYKDTDTFTPVRGADYREVPPESLGLNEGERIAVIYATGDIGSGSSANSPS
                     GEQSIGSDTLAKAINDAAADKTIKAIVMRVDSPGGSGLASDIIWHAVEAANQKKPVVV
                     SMSDVAASGGYYISAAASKIIAQPSTITGSIGVLAGKPVMRGFYDWLGISNEYVLRGK
                     TAGLFRETEKFSDEERAKFEEWIKTTYYQDFVPKVAKGRKKDAQAIDSVGQGRVWTGA
                     QAKDRGLVDDFGGLDKAIEVAKQLANIPADKGVQRVILPYPQTFLQQILSGGGENSNT
                     KVEQQRAIAAALPEDARRALRYMALMDRMKDGEVMMLMPFDLRIK"
BASE COUNT          388 a          371 c          426 g          314 t
ORIGIN      
        1 gccgccgacg tcatgttctt cagaggctcg ctagacaagc tcggcattta tccagacatc
       61 tatcaaatcg gaaagtacaa aagcgccggc gacatgttca cgcagaagac gatgaccgac
      121 gcgcaccgtg agtacgtcaa ctcgttgctc gacgatctct acggtcgtta tgtaaatgca
      181 atcgcgcaag cccgtcataa gacgcctgat gaagttcgca ccctgatcga caacgcgcct
      241 tacaactcgg cgaaagccaa agaagccgga ctggtcgatg aatcgctcta ccgggacgac
      301 gtcgaaaagc aaatcaaagc ttcacttggt tacaaagaca cggatacctt taccccggtt
      361 cgcggagcgg actatcgcga agttccaccg gagtcgctag gtttgaacga gggtgaacga
      421 atcgctgtta tttatgccac gggggacatc gggtcaggca gttcagcgaa tagcccttcc
      481 ggcgaacaat caattgggtc tgacacgctc gccaaagcaa taaacgatgc ggcagccgac
      541 aagacaatca aagcgatcgt gatgcgcgtt gatagtcccg gcggttccgg gttggcgtca
      601 gacatcatct ggcatgcagt cgaagcagca aatcagaaga agccagttgt ggtttcgatg
      661 agtgacgtcg cggcctcggg tggttattac atttcagcgg ccgcgagcaa gataatcgcg
      721 caaccctcga cgattaccgg ctcgattgga gtcttagctg gtaagccagt gatgcgtggc
      781 ttctacgatt ggctcggcat ctcaaacgag tatgtgttgc gcggcaagac tgcaggattg
      841 ttccgtgaga ccgaaaagtt ttcagatgaa gagcgcgcga agtttgaaga gtggatcaag
      901 acaacgtatt accaggactt tgttccgaag gttgctaaag gtcgcaagaa agatgcgcag
      961 gcgatcgact ccgtcggcca ggggcgtgtt tggacgggag cacaagcgaa agaccgcggg
     1021 cttgtggatg atttcggcgg gcttgataag gcgattgaag ttgccaagca actcgcaaac
     1081 attccggctg acaaaggtgt gcagcgagta attctgccgt accctcaaac attcctgcag
     1141 cagatactga gcggaggcgg tgaaaactca aacacgaagg tggaacagca acgcgccatc
     1201 gccgccgcac tccctgaaga tgctcgacgt gcgctgcgtt acatggccct gatggatcgg
     1261 atgaaagacg gcgaggtgat gatgcttatg ccgtttgatc tgcggatcaa gtagagctta
     1321 ggttggggct aaagaaaagc attttccata tctcatttga catttttcag ttggtcattt
     1381 gggaaaacag atgaggtcag taccacgacg cggtagcgtg tggctttctt gaaccaatca
     1441 aacggattca aaagccacac gctaccgcgt cgtggtactg acctcattgc cagcaggca
//
LOCUS       DATCGC010001796         1109 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_59286, whole genome shotgun sequence.
ACCESSION   DATCGC010001796 DATCGC010000000
VERSION     DATCGC010001796.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1109
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_59286"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1109
                     /locus_tag="VIJ87_17135"
     CDS             <1..>1109
                     /locus_tag="VIJ87_17135"
                     /inference="COORDINATES: protein motif:HMM:NF028519.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SdrD B-like domain-containing protein"
                     /protein_id="HEY5446153.1"
                     /translation="VGGQGGGRSTLAAAVRWQTSDHLSTYASYNQTKGAQTFNLSRLS
                     FSGSTLTGGLNYRVGKRAQFGLRYTRQRINSTSRFALASQLETNSLVGTSNFDFAHNW
                     NNSLEIRYNTTHEPVAGAKIDSGFGLRNEVRHTAEWWSGTAYFNYQNSALSLSSLVLR
                     NPTLLPPLVRQAFEADPQRFLAINRDLLQRILGDIELPQTRSTEVGVRFQAKLSRYTA
                     TGEVRFDDSKLGPEAQKNIVGSITLAMHLDSVNSIGLSTNLQRTLGGDALLGNKNGFS
                     SLTVSYTRRLGGPAENGFLMKLLGRDHGTIKGRVFADLNADGEDNPQEPGIPGIKVEL
                     EDGRSLETQQDGTFKFDRVQLGTVTVRLASDELGK"
BASE COUNT          281 a          295 c          282 g          251 t
ORIGIN      
        1 gttggtggcc agggcggggg acggtcaaca cttgccgccg cagttcgctg gcagacatcc
       61 gatcacctta gtacctacgc cagctataac cagaccaaag gagcacagac attcaatctc
      121 agtcgtctct ctttcagcgg atcaaccttg actggcgggt tgaactatcg tgttggaaag
      181 cgcgctcagt ttggattgcg ttacacccgt caacggatca attcgacttc acgatttgca
      241 ttggcctcgc agcttgaaac gaacagtctg gttggaacgt cgaacttcga cttcgcacat
      301 aactggaaca acagcctcga gattcgttac aacacaactc acgaaccggt agccggcgca
      361 aaaatagata gcggcttcgg attgcgaaac gaagtacgtc acacggccga atggtggtcc
      421 ggtacagctt atttcaacta tcagaacagc gccttatcgc tttccagttt ggtcctgaga
      481 aatccgacgc tactaccgcc tctcgttcga caggcttttg aagccgaccc acaacgtttt
      541 ctggcaatca atcgagatct tcttcaacga attctgggtg atattgagct tccccaaacg
      601 cgaagcactg aagttggcgt tcgctttcag gcgaagcttt cgcgctacac cgcgaccgga
      661 gaagtgcggt tcgatgacag taagctgggt cctgaggcgc aaaaaaacat tgtcggatcg
      721 atcactctcg cgatgcacct tgattcagtt aactcgattg gtctaagcac caacttacaa
      781 cgcacgttag gcggtgacgc cttgcttgga aacaaaaatg gcttttcatc ccttaccgtg
      841 tcttacacgc gacgcctcgg agggccagcg gaaaacggtt tcctgatgaa attgctgggt
      901 cgcgatcacg gcaccatcaa gggacgcgtg ttcgccgact tgaatgctga tggtgaagac
      961 aatccgcaag aacctggaat accaggaata aaggtagaac tcgaggatgg acgttcacta
     1021 gagactcaac aagatggaac cttcaagttc gatcgcgtgc agcttggcac cgttacagtg
     1081 cgtctcgctt ccgacgagct cggtaaaag
//
LOCUS       DATCGC010001797         1383 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_459248, whole genome shotgun sequence.
ACCESSION   DATCGC010001797 DATCGC010000000
VERSION     DATCGC010001797.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1383)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1383)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1383
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_459248"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1055)
                     /locus_tag="VIJ87_17140"
     CDS             complement(<1..1055)
                     /locus_tag="VIJ87_17140"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY5446154.1"
                     /translation="MNARALTRTLALLVISLCFLYTPSMAQIGGGGTIQGTVTDPGGA
                     IVPGASVTVTNVATGVETTKQTNEAGVYVIPALLPGEYKVVAVLKGFQTLIQEKVIVD
                     ALSTVTVNLSLKVGEVTETVTVSEAPSQLNTSDARLGTTIRNELYTNLPLAMGTAVAG
                     SGIGQGPRNPGAFIFLLPGVTEGNRWGQVNGAQGFSKDVFIEGVPVTDPIQQGEGRTI
                     ALGVSVEAVEQFQVETSGTGVEFNGQGSENYSIKSGTSQFHGSGFEYLRNTVLDARGF
                     FPAIRPVEHQNEFGATIGGPIIKKKLFFFFSYDGWRYRVTSPTQLVSIPTLKERTGDF
                     TELGVNIYDPLTTVCVGG"
BASE COUNT          333 a          362 c          343 g          345 t
ORIGIN      
        1 ccaccgacgc aaactgtggt cagtggatcg tagatattta cgcccagctc agtgaaatca
       61 ccggtacgtt ctttcagcgt tggaattgaa acaagctgcg tcggactcgt aacgcgatag
      121 cgccatccgt catatgagaa gaagaagaat agtttcttct taatgattgg cccgccaatg
      181 gtcgctccaa actcgttttg atgttcaacg ggacgaattg ccggaaagaa accgcgcgca
      241 tcgaggacag tgtttctcaa gtactcaaag ccggaaccgt gaaactgact tgttccggat
      301 ttgattgagt agttttccga accctgacca ttaaattcca ctcccgtacc actagtttcg
      361 acctgaaact gttcgactgc ttcgaccgaa acacccaacg cgatagtacg tccttcgcct
      421 tgctgaatcg gatcagtaac aggcactcct tcaatgaaga catctttcga gaatccctgt
      481 gctccgttga cctgccccca acgattgcct tccgtcacgc cgggtagcag aaaaataaaa
      541 gcgcccggat ttcttggacc ttgtccaatt ccggatccag ccacggccgt tcccattgcc
      601 aggggtaagt ttgtgtacaa ctcatttcgg atcgtagtgc cgagtcgagc gtcagaggtg
      661 ttcagttgtg atggcgcctc tgagacggtg actgtctcag taacctcacc aaccttgagc
      721 gagagattca ccgtaacagt gcttagcgca tcgacgatta ccttttcctg gatcaatgtt
      781 tgaaagcctt tgagcaccgc cacgactttg tactcacccg gtaacaatgc ggggatcaca
      841 taaacgccag cctcattagt ctgtttggta gtttcgacgc cagtagcgac gtttgtcaca
      901 gtcacgctcg cgcccggcac aatcgcgccg ccaggatcag ttacagttcc ctggatggtt
      961 ccaccgccgc cgatttgagc catcgaaggc gtgtacagaa aacagagtga tattacgagc
     1021 agagccaaag ttctagtcaa agctctcgcg ttcatggttg tctccttctc gtttgaatgc
     1081 atcgattgcg cgtggcaaca acgcggaatt caggcgctcg tttgactaga cttcgaggtt
     1141 gggaacctac agaagagagc gcctgaaagt gtgttgttta gctcagcaac ttccgatggg
     1201 ctggatgcgt tcatcagaag cgatttccta ttgggactaa agcatcgttg gaatcagggc
     1261 atcaccttaa tccatttcgg ggctgagctt attgcacagt cgtgtagcct caactatgcg
     1321 atctgcttag tgaggacttt gatccttgca gggcggcatt agcgaggaaa gtcggtacca
     1381 caa
//
LOCUS       DATCGC010001798         1377 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_390575, whole genome shotgun sequence.
ACCESSION   DATCGC010001798 DATCGC010000000
VERSION     DATCGC010001798.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1377)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1377)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1377
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_390575"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..424
                     /locus_tag="VIJ87_17145"
     CDS             <1..424
                     /locus_tag="VIJ87_17145"
                     /inference="COORDINATES: protein motif:HMM:NF012766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="M24 family metallopeptidase"
                     /protein_id="HEY5446155.1"
                     /translation="NRAGTEVLKDGLLKLGLITDRNSMQHRLWFMHGTSHWIGMNVHD
                     VGGGAKFEPGVTFTNEPGIYVRPDALDYMPFGWKQEDWEKFKTAVRPAFEKYKSIGVR
                     IEDDMLITPDGVKWMSAALPRKISDIEDFIAKARRATE"
     gene            complement(511..1038)
                     /locus_tag="VIJ87_17150"
     CDS             complement(511..1038)
                     /locus_tag="VIJ87_17150"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon monoxide dehydrogenase subunit G"
                     /protein_id="HEY5446156.1"
                     /translation="MKIEGKHVIDAPRDRVYGSLVNPEVLQRTIPGCERLEKTGENTF
                     AATIRAGVGSIKGIFNGTVRLEDLRAPEHFRMVVDGKGAPGFLKGSGDLDLVTEGEST
                     AVNYTGDVQIGGTIASVGQRMIQGTVKMMAAQFFTALGAEAKTEVGEPPPQHGFFRTA
                     LRWFSGWIKNLVGKR"
     gene            complement(1174..>1377)
                     /locus_tag="VIJ87_17155"
     CDS             complement(1174..>1377)
                     /locus_tag="VIJ87_17155"
                     /inference="COORDINATES: protein motif:HMM:NF015415.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446157.1"
                     /translation="VKAYRASAAESGLVGSNLDDAAISNAASHVCDGIDPNADLYASG
                     EYRVHLAQVHTRRAIAAAKNSAH"
BASE COUNT          318 a          372 c          357 g          330 t
ORIGIN      
        1 aaaccgcgcg gggaccgaag tgctcaaaga tggactcttg aagctgggac tgatcacgga
       61 tcgcaattcg atgcagcatc gcctctggtt catgcacgga acctcgcact ggattggcat
      121 gaacgttcat gacgttggtg gcggagccaa gttcgaacct ggagtgacct tcacaaacga
      181 gcctggaatt tatgttcgac cagatgccct tgattacatg ccgtttggct ggaagcagga
      241 agactgggag aagtttaaga cggctgttag gccagcgttt gaaaaataca agagcattgg
      301 agtccgtatt gaagacgaca tgctcatcac tcctgatggc gtgaagtgga tgagtgcagc
      361 attaccgagg aagatatcgg atattgagga cttcatcgcg aaggcgagaa gagcgactga
      421 ataaagctgg acttaggtct tgggttttag gtctttggtt tacttcgctg gatgcgttgc
      481 accaacttcc aaagacccaa ggccaaagcc ttatcttttc ccaaccaaat tcttaatcca
      541 ccctgagaac cacctcaggg ctgttcgaaa aaagccatgt tgcggtggag gctcaccgac
      601 ttctgttttt gcctctgcac ccaaagccgt gaagaactgc gcggccatca tctttaccgt
      661 accctggatc attcgttggc caacactcgc aatcgttcct ccgatttgca catcgcctgt
      721 gtagttgact gcggttgatt caccttcagt taccaggtcc aggtcacccg atcccttcaa
      781 aaatcccgga gcgccttttc cgtcaaccac cattcggaaa tgttctggtg cgcgcagatc
      841 ctcaagtcga accgtcccat tgaagattcc cttaattgaa ccaacacccg cccgtatcgt
      901 ggcggcaaaa gtattctcgc ccgttttctc gagacgttcg caaccaggga ttgttcgttg
      961 gaggacttcc ggatttacca gcgacccgta gacacgatcc ctgggggcat cgattacatg
     1021 tttgccttcg atcttcataa ggctgaatcc aggacgcctc cttggagtgc ggtggcccgg
     1081 caccgctttg tcaaagaaat acctgagtgg tggtgtcttg gtttaccaaa gcggtgccgg
     1141 gccaccgcac tccagggagc tacatgaccc gatctagtgc gcactgtttt tcgccgccgc
     1201 aatcgcacgc cgggtgtgta cttgtgccag gtgcacacgg tattcaccag aggcgtaaag
     1261 gtctgcgttc ggatctattc catcgcagac atgcgacgcg gcattgctga tggcagcatc
     1321 atccagattt gaaccaacca acccagactc ggcggcactt gcgcggtaag ctttcac
//
LOCUS       DATCGC010001799         1509 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_390584, whole genome shotgun sequence.
ACCESSION   DATCGC010001799 DATCGC010000000
VERSION     DATCGC010001799.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1509
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_390584"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..431
                     /locus_tag="VIJ87_17160"
     CDS             <1..431
                     /locus_tag="VIJ87_17160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446158.1"
                     /translation="RLIAGIKDKVIDDGPLLETAKEHLAKSFSVVGICERFEESLMLI
                     AKTFGWEVPFYENRKVSKNRSRVDQKAIDMIREHDRLDLELYEFGKGLFEESLRKKAD
                     AVNAGLEALRALPKPGSVESLYKSSVGAGRILVSKVASVI"
     gene            611..>1509
                     /locus_tag="VIJ87_17165"
     CDS             611..>1509
                     /locus_tag="VIJ87_17165"
                     /inference="COORDINATES: protein motif:HMM:NF018669.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008146 - sulfotransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase family 2 domain-containing
                     protein"
                     /protein_id="HEY5446159.1"
                     /translation="MSSTMSEIATSKGLDQSATDQDRVVGGLEEAVIFLHLPKTAGTT
                     LNRLIEWEYPVFEMYSIDPVFFTWSAAHLRRLSADRLKKIRMFKGHMLYGLHEVLPQP
                     ATYITVLRDPVDRVISAYYFMRSYKLHPLYWKLRRTNCTLEEFVRRFQRDNVQSKIIG
                     GSPYELPCTREVVEKAKDNLRHRFSVVGLSERFEESLALMKLRFGWKLSSYSSFNVTR
                     SRPKKHDLPQSTLELIHEKNGLDMELYECGKQIFEAAVAANTEAVARLAEDLRATRTR
                     SQGSFGGTMFSLRAAARKAINRA"
BASE COUNT          370 a          355 c          422 g          362 t
ORIGIN      
        1 gcagattgat tgccggaatt aaggataagg tgatagatga tgggccgcta cttgaaacgg
       61 cgaaggaaca tcttgcgaaa tcgtttagtg tggtcggaat ttgtgagcgt ttcgaagaga
      121 gcctgatgtt gattgcaaaa acttttggct gggaagtccc cttctacgag aatcgaaaag
      181 tctcgaagaa ccgttctcga gttgaccaaa aggcgatcga catgatcaga gagcacgatc
      241 gtctcgacct cgaactttac gagtttggca aaggactgtt tgaagagagc ttgcgcaaga
      301 aggcagatgc ggtcaacgct ggtttggagg ctttgcgagc gctccctaag cctggatcgg
      361 tcgaaagcct ctacaaatct agcgtaggtg ccggccgaat tttggtcagc aaagttgcgt
      421 ccgtcatctg aagggcgagt gcggtatgtt tgggtaccgc cgaccgagtg ttttgcaact
      481 taagatccca tattggcagc tctggcatgg tgatggcttc aggaaaggaa ctcccgatca
      541 tcctcataaa gatctggcac gatgcatgcg aagtgagcta tgattgggca cgcaagaatt
      601 gaatatacaa atgtcatcaa ccatgagcga aattgcgacc tctaagggct tggatcagtc
      661 cgcgaccgat caagatcggg tcgtcggtgg acttgaggag gccgttattt tcctgcatct
      721 gccaaagacg gcgggcacta ctctcaatcg gctgatcgaa tgggaatatc cagtttttga
      781 gatgtattcg atcgatccgg tttttttcac ctggtcggcc gcgcatcttc gaaggctttc
      841 ggccgaccgc ttgaagaaga tccgtatgtt caagggccat atgctgtatg gcctacatga
      901 agtcctcccg cagccggcca cgtatatcac cgtattgcgc gatcctgtcg accgggtgat
      961 atcggcctat tacttcatgc ggagttacaa gttgcatcca ctctattgga aacttcgccg
     1021 aactaactgt acacttgaag aattcgttcg gcggttccaa cgcgataatg tccaatcgaa
     1081 gatcatcggt ggctctcctt acgaattgcc ctgcacgcgc gaggtcgtgg aaaaggcgaa
     1141 ggataattta cgacatcgct tcagtgtggt cggcctctct gaacgcttcg aagagagtct
     1201 agctctcatg aaattgcgtt tcggttggaa actcagctct tactcgagtt tcaacgtgac
     1261 ccgttctcgt ccgaaaaagc acgacctgcc ccaaagtacg ttggaattga ttcatgagaa
     1321 gaatggcctg gacatggagc tttacgagtg tgggaaacaa atctttgaag cggccgtggc
     1381 ggctaacaca gaggccgtgg cgcgtctagc cgaagacttg agagcaaccc ggaccagatc
     1441 acaaggatcg ttcgggggca cgatgttctc gctgcgcgcg gcggcgcgga aagcgatcaa
     1501 tcgagccta
//
LOCUS       DATCGC010001800         1369 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_292209, whole genome shotgun sequence.
ACCESSION   DATCGC010001800 DATCGC010000000
VERSION     DATCGC010001800.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1369)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1369)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1369
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_292209"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..431
                     /locus_tag="VIJ87_17170"
     CDS             <1..431
                     /locus_tag="VIJ87_17170"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HEY5446160.1"
                     /translation="DMIGRSKKEGDTNPKNKDLTGPDAVYLIGSTMMSTELGELVQSV
                     NKSYLNISYDTRYDDPADPHRFFYRSDHFNYARKGIPIIFFFDGEHEDYHQAGDSPDK
                     IDYQKMEKITRTVYMTLWEVANRATRVKVDKPLPAQLTGS"
     gene            complement(428..724)
                     /locus_tag="VIJ87_17175"
     CDS             complement(428..724)
                     /locus_tag="VIJ87_17175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446161.1"
                     /translation="MARELTKLHEEVRRGRLSDLVEHYSQVEPRGEIVLLIDRNSIET
                     GEAESNSERSVGELVAQFEAEGIDHRAALKKAARELKLSRAEAYRKLQTERGRS"
     gene            complement(709..1272)
                     /gene="rsmI"
                     /locus_tag="VIJ87_17180"
     CDS             complement(709..1272)
                     /gene="rsmI"
                     /locus_tag="VIJ87_17180"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: protein motif:HMM:TIGR00096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0000451 - rRNA 2'-O-methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HEY5446162.1"
                     /translation="MPGTLYVVATPIGNLADITQRAIQILKDVELIACEDTRHTRKLL
                     QHFGINTKTTSYHEHNENQRGDELLDLLKQGSDIAVVSDAGTPAISDPGFRLVRSAIE
                     NEITVVPVPGPSALITALVAAGLPTDEFFFAGFLPPRASARQTRLRGLASVPGTLIFY
                     EAPHRLAATLKDAYETLVSARLLWLVS"
BASE COUNT          333 a          358 c          361 g          317 t
ORIGIN      
        1 tcgacatgat cgggcgaagc aagaaggaag gtgacaccaa tccgaaaaat aaagacttga
       61 cggggccaga cgccgtttac ctgattggct ccacaatgat gagtacggaa cttggtgaac
      121 ttgttcagtc ggtaaataaa tcgtatctaa acatctccta cgatacccgc tatgacgatc
      181 cggcggatcc acatcgcttc ttctaccgca gtgaccactt caactacgcg cgcaaaggta
      241 tccccatcat tttcttcttt gacggcgagc acgaagacta ccaccaagcc ggcgattcac
      301 cggacaagat cgattatcaa aagatggaga agataacccg aacggtttac atgacgttgt
      361 gggaagttgc caaccgtgcg acccgtgtga aggtcgacaa accacttcca gcccagttga
      421 ctggaagtta agagcgtcct cgttcagtct gcagttttcg gtaggcttcg gcgcgtgaga
      481 gtttcaactc acgcgccgct ttctttaaag cagctcggtg atcaattccc tccgcctcaa
      541 actgtgcgac aagttcccca acgcttcttt cgctgtttga ttccgcctcg ccagtttcga
      601 tggagttacg atcaataagc aggacgatct caccgcgagg ttctacctgc gaataatgtt
      661 cgaccagatc actcagtcga ccacgtcgca cttcttcatg cagttttgtt agctcacgag
      721 ccacaacagc ctcgcgctca caagcgtttc gtaagcgtct ttcaatgtgg cagcgagacg
      781 atgaggggcc tcgtaaaaga ttaacgtccc gggaacagag gccagcccgc gcaagcgtgt
      841 ttgacgagca ctcgcacgcg ggggaaggaa accagcaaag aaaaactcat cagtggggag
      901 tccggctgcc accagggccg tgataagtgc gctgggacca gggactggta caactgtgat
      961 ctcattttca attgccgagc gaacgagtct gaaacccggg tcacttatcg ccggagtacc
     1021 ggcgtcggaa acaactgcga tgtcgcttcc ctgtttcaag aggtcgagta gttcatcgcc
     1081 gcgctgattt tcgttgtgtt cgtgataact ggtggttttt gtgttgatgc cgaaatgctg
     1141 aagaagcttg cgcgtgtgac gcgtgtcttc gcaggcaatt agctcgacgt ctttgagaat
     1201 ttgaatcgcg cgctgggtaa tgtctgcgag attgccgatg ggagttgcca caacataaag
     1261 ggtaccgggc atgcacgcga ttatgtccga tatgcttcag cttgtcgcta ccctgaaaac
     1321 aactcagccg cagaattagt cagtaccacg acgcggtagc gtgtggctg
//
LOCUS       DATCGC010001801         1941 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_491557, whole genome shotgun sequence.
ACCESSION   DATCGC010001801 DATCGC010000000
VERSION     DATCGC010001801.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1941)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1941)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1941
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_491557"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1941
                     /locus_tag="VIJ87_17185"
     CDS             <1..>1941
                     /locus_tag="VIJ87_17185"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEY5446163.1"
                     /translation="VSFTLRENVCFQNGQPMTAQSVKHSFERSIRVARELPPGLAAIR
                     GAAEFAKSADSELSSILIRADYRLEIQLSEPLSIYPALLTDFKTGVTLTENDEPKSIP
                     IGTGPFRMVSYRADNIVMERNEKYWKGALAHLSEVEFRAGLNASEISSGLRSGEIDLA
                     RDLSPQDLEEFLRDTRLRSGFVESPRKNTYFFIFNCTSDSVANNAELRRALSGVVRTH
                     DLVWQTLGRFAQPAVCLIPPGMLGYDAGRRRQTLTHDEAVAALRDAGISEQIKLRAAV
                     HPLLMDRYKALMTSLLSIWAEVGVKVEVVTPNMASYLDAFQNSNGIDLFIGRWNVDYD
                     DPDDFTYGLFHSRVGLYRTYVASSDGDQILEEARTESRPGVRSSLYRKYENFLQETAM
                     VLPLFHDVDYRLANAKVAGLNLRGSAPYVNYAQMGKFESSANASESVRAGGGILQVPI
                     TGTLYHLDPSLAGTVEDAEVLPSVFETLTRDLGGARIGPWLAASFTSEQGGKRFRFRL
                     RDDVRFHDGRKVTARDVRYSLERLLLNKENAGSRFTYAAIRGAKALLNGELLDLVGFR
                     IHSAEEFTIELEEPMSFFPALLSYHAAAVIPEGSDKFGNSWQDGSVGTGPFRVLKFSP
                     GQRLELERNKSYWRPGYPKSEGV"
BASE COUNT          431 a          474 c          544 g          492 t
ORIGIN      
        1 ggtttcgttc acgctacgcg agaacgtttg ctttcaaaat ggtcagccaa tgactgcgca
       61 gtcggtcaag cactcgtttg aacgaagtat tcgtgtggcg cgtgaactac cgccgggact
      121 tgcggcgatc cgtggtgctg ctgaattcgc aaagagtgcc gatagcgaac tgtcgagcat
      181 tctgattcga gcggattaca ggctcgaaat tcaactatca gaaccactct ccatctatcc
      241 cgctttgcta actgatttca aaacgggtgt gactcttacg gaaaacgatg aacccaagtc
      301 gattccgatc gggactggtc cgttccgcat ggtctcatat cgggctgaca atattgtgat
      361 ggagcgtaat gagaaatatt ggaaaggtgc tctcgctcat ctcagtgagg tcgaatttcg
      421 cgccggacta aatgcgtcgg aaatttcttc gggtctacgt tcgggcgaaa ttgatcttgc
      481 acgcgatctt tcacctcagg atctcgaaga gtttctgaga gacactcgtc tgcgcagtgg
      541 cttcgtggag tcgccgcgca agaacactta tttctttatc ttcaattgca cgagtgattc
      601 agttgcaaac aacgcagaac ttcgtcgtgc gctttcaggc gttgtgagaa ctcacgatct
      661 cgtttggcaa actttaggtc gcttcgccca acccgcggtg tgtctgatcc caccgggcat
      721 gctcggctac gacgcgggaa gacgacgtca aacgttgaca catgatgagg cggtggcggc
      781 actccgtgat gcgggcatta gtgaacaaat caaactccgt gcagctgtgc atccgttgtt
      841 aatggatcgc tacaaagcgc tgatgacaag tttgctttcg atctgggctg aggtcggggt
      901 gaaggtggaa gttgttactc caaacatggc ttcctacctg gacgcgttcc agaacagcaa
      961 tggcatcgac ttgtttattg gacgttggaa tgtcgactac gacgatcctg acgatttcac
     1021 ttacggtctt ttccattcgc gggtaggtct ctaccgcacc tacgtggcgt cttcggatgg
     1081 tgatcagatt cttgaggaag cacgcacgga aagtcgcccc ggtgtgcgct cgtcgcttta
     1141 tcgaaagtat gaaaactttc tgcaggagac tgcgatggta ctgccgctct tccacgacgt
     1201 tgactatcgc ctcgcgaatg caaaggtggc gggtcttaat ctccgtggca gcgcacctta
     1261 tgtgaactat gcccagatgg gcaagttcga gtcgagcgcg aacgcaagcg aaagtgtgag
     1321 agcgggcggc ggaattctgc aggttccaat cacaggtaca ctctaccatc tcgatccatc
     1381 gctggccggc accgtggaag atgcggaagt gttaccaagc gtcttcgaaa cactgacacg
     1441 cgatcttggt ggcgctcgta tcggtccatg gttggctgcg agctttacgt cagaacaggg
     1501 tggcaagcgg tttcgctttc gacttagaga tgacgttcgg ttccacgacg gacgcaaagt
     1561 cactgctcgt gacgtacgtt attcgttaga gcgactcttg ttgaataagg agaacgccgg
     1621 cagtcgcttt acttatgcgg cgattcgggg cgccaaggcg ctactcaatg gtgaactcct
     1681 ggatctggtt ggttttcgta ttcattcggc agaagagttt acgattgaac tcgaggaacc
     1741 aatgtcgttc tttcctgcat tgctctccta tcacgcggca gccgttattc ccgagggtag
     1801 cgataaattc gggaatagtt ggcaggacgg tagtgtgggc actggccctt ttcgagtttt
     1861 gaaattctcg ccaggacagc gtttagaact tgaacgtaac aagtcgtact ggcgcccagg
     1921 ttatccgaag agtgaagggg t
//
LOCUS       DATCGC010001802         3607 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_390609, whole genome shotgun sequence.
ACCESSION   DATCGC010001802 DATCGC010000000
VERSION     DATCGC010001802.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3607)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3607)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3607
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_390609"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..359
                     /locus_tag="VIJ87_17190"
     CDS             <1..359
                     /locus_tag="VIJ87_17190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446164.1"
                     /translation="ITLREHYRRKRERYDFEWPSVYDRDLYRIFSDDPGKRSKPSAAS
                     FIRSVRREVRQIVAEGTGVHQYTIDHVLQNMIDRCKELKLRVATPSREARRRVMIVLT
                     VQVMNVLHSGYHRIAV"
     gene            356..1390
                     /locus_tag="VIJ87_17195"
     CDS             356..1390
                     /locus_tag="VIJ87_17195"
                     /inference="COORDINATES: protein motif:HMM:NF019121.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446165.1"
                     /translation="MTFEPRKKLRIIVLVHEDLVPPDSLNGLSDKEKLEVKTEFDVIS
                     TLKKMGHEVYPVGLYNQLNAIGDALLEHKPHIAFNLLEEFHGYPLYDQHVVSYLELMK
                     QPYTGCNPRGMTLAHDKALTKSILSYYRIPVPNFAVFPMNRKVRRPKRLKFPLLVKSI
                     SEEGSVGIAQASIVHDDEKLTQRVEFIHGKNKTAAIAEQYIKGREIYVGVIGNQNIQT
                     YAPWELVMEKLPEGSENIATLKVKWDPAYQEKVGVATRAAELTPEQHKNLGRLSKRIY
                     RHLFLSGYARLDYRMTDDGQFYLLEANPNPQIAHKEDFADSAEYSGIPYDQLLQKIIT
                     VGLNYAGRGT"
     gene            2004..2627
                     /locus_tag="VIJ87_17200"
     CDS             2004..2627
                     /locus_tag="VIJ87_17200"
                     /inference="COORDINATES: protein motif:HMM:NF013073.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HEY5446166.1"
                     /translation="MVFRKLFPRALVAALTLVILSSSAFAQTRPRVSTPADTNEVSCS
                     IDDPALIASTAASESKPVWEAKPAKPTIDVAPSIALPKFQPLLLAAIDERLGSPYHWG
                     STGPRSYDCSGFVWSIYNSIGVDFERSSARTLFARFTPPTLDEQYKFGTLVFFNGLSH
                     VGVVADEKGFYHASRHNGVVYATFEGYWGKHIDGFRRVPLPVGRITD"
     gene            complement(2762..2986)
                     /locus_tag="VIJ87_17205"
     CDS             complement(2762..2986)
                     /locus_tag="VIJ87_17205"
                     /inference="COORDINATES: protein motif:HMM:NF041655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MM0924 family protein"
                     /protein_id="HEY5446167.1"
                     /translation="MENFLSRFVGKRIDVYCGGSASLRGDMIKVESGVLFLRDADGKT
                     CYIAVDKIVVVWEARDDSHRAGFMPPPNKD"
     gene            complement(3067..3471)
                     /locus_tag="VIJ87_17210"
     CDS             complement(3067..3471)
                     /locus_tag="VIJ87_17210"
                     /inference="COORDINATES: protein motif:HMM:NF015639.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HEY5446168.1"
                     /translation="MGTISTNGKKKSYYDCVDCPAYCCSVYDRVQVTPRDIRRLANHF
                     GVTEEVATSRYTKVWNKERVLRRKKDVLFKETCQFINTETRGCTIYDARPAVCREFPT
                     TTRCAYYDLLSFEREQQDDPKVIPLVHITFKK"
BASE COUNT          889 a          906 c          850 g          962 t
ORIGIN      
        1 gaataactct gcgcgaacat tatcgtcgca agcgggaacg ttacgacttc gaatggccgt
       61 ctgtttatga ccgagatctt tatcgaatct tttctgatga cccaggaaag agatccaaac
      121 cgagtgccgc gagtttcatt cgaagtgtgc gtcgtgaggt tcgccagatc gttgcggaag
      181 gaaccggcgt tcaccaatac acgatagatc acgtgttgca gaacatgatt gatcgatgca
      241 aggagctcaa acttcgtgtg gctacacctt cacgagaagc ccgtcgtcgt gtaatgatag
      301 tattgacagt gcaagtcatg aacgtgctcc attcgggtta tcatcgtata gccgtatgac
      361 gtttgagcca cgaaagaaac ttcgcattat cgttctcgtt cacgaagacc tcgtgcctcc
      421 cgattcgttg aacggtcttt ccgacaaaga aaaactggaa gtcaaaactg agttcgacgt
      481 gatctcaacg ttgaagaaga tgggccacga agtgtatccc gttggtctat acaaccaact
      541 caacgcaatc ggcgacgcat tgctagaaca caagcctcac attgctttca acctgctcga
      601 agaatttcac ggttacccac tctacgatca gcacgttgtt agttatctcg agctgatgaa
      661 gcagccttac acaggttgta atcctcgtgg gatgacgctc gcgcacgaca aagcattaac
      721 gaaaagtatt ttgtcgtatt accgcattcc tgttccgaac ttcgcggtgt ttccgatgaa
      781 tcgaaaggtt cgccggccga agcgtttgaa gtttccgctc cttgtgaagt caattagcga
      841 agaaggttcg gtcggcatag cgcaggcctc gattgttcac gacgatgaaa agttgactca
      901 acgagttgag ttcattcacg gcaagaacaa gactgcggcg atcgccgaac agtacattaa
      961 aggccgcgag atctacgttg gagtgatagg taatcaaaac atccaaacgt atgcgccctg
     1021 ggagttggta atggagaaac ttccggaagg ttctgagaac atcgccacgt tgaaagtgaa
     1081 gtgggacccc gcatatcagg agaaagtggg agtcgcgacg cgggcagctg aactcacgcc
     1141 ggaacaacac aagaacctgg gacggttgtc aaagaggatt tatcgtcacc ttttcttgag
     1201 cggttatgcc cggctcgatt accgcatgac cgacgatgga cagttttatc ttctggaagc
     1261 aaacccaaat ccccagattg ctcacaagga agactttgct gattccgcag aatacagcgg
     1321 tattccgtat gaccagttgc tacagaagat tattactgtg gggctgaatt atgctggacg
     1381 tggaacataa ttgaggccgc atcttcgggg gttgatcttg tgtttcgccg caacaaaaat
     1441 gcaaagattt tcgatgggct ttcttcagga acacctcgcc gattctcact ttagataaag
     1501 acatacaagt aactcgaatg tcgtcaggag cattgcccca tgactgtagc tattactgtg
     1561 ctttttacgc tgacgctcta ttacaagctt caaagagctt aaatgtccga tgggcgttag
     1621 cagtccgtga gaaagcggtt gagtcgctat taattgcgct agcctctcct cagccgacaa
     1681 attttcttca gaccgccgaa actaaaactt cgtcctcctc gctcgaatct tcgaacttct
     1741 tacttcatat tgaccgtgtt gtgttttcgt atcgcacaca cgccaccaat tttgtagcct
     1801 gtcgttcacg acccaaaaac gaatcatgac ctctttcagt ccgacatcgg tcagcatgta
     1861 gcgtttcatc acgaaacagt cacattgctg gttgaagcac ctatcttcag ccgctaatat
     1921 gcctttgctt ttcagcggtg ctcccctcac ttagaaattc aaacaagtag gaaatttacg
     1981 aaggagaagg tacttccccg tttatggtgt ttcgcaaact attccctcga gcattagttg
     2041 ccgctctgac cctggtcatt ctgtcgtcat cggcatttgc tcaaactaga ccacgagtat
     2101 cgaccccggc tgatacaaac gaagtttcat gttccatcga tgatccggca ctcattgcct
     2161 ctacagccgc tagcgagtcg aagccagtct gggaggcgaa acctgccaaa ccaaccatcg
     2221 atgttgctcc gagtattgct ttaccgaagt tccagccttt acttcttgca gccatagatg
     2281 aacgcctggg ctcgccatat cactggggct caactggtcc acgatcttat gattgctccg
     2341 gttttgtttg gagtatttac aactctattg gcgttgattt tgaaagaagt agtgcccgaa
     2401 ctctatttgc tcgattcacg cctccgaccc tagacgagca atacaagttc ggtacgttgg
     2461 tgttcttcaa tggactttcc cacgttggtg tcgttgctga tgaaaaaggc ttctatcatg
     2521 catcgcgaca taacggagtt gtctacgcga ctttcgaagg ttactgggga aagcacattg
     2581 atggtttccg tcgggtgcca ctacctgtcg gccgcatcac cgactaaagg aacgcgggga
     2641 acaaaaactg agctttgaac tttaagcttt gtactttgcc tgttgatgaa gatctgcttc
     2701 cttcttcaac agccatcaaa gtacaaagcc aaaagttcaa agctcagttt tttattcgtt
     2761 tttagtcttt attcggcggt ggcatgaacc cggcacgatg cgaatcgtct cgtgcttccc
     2821 aaaccacaac gatcttgtcg accgctatgt agcaagtctt gccatctgcg tcgcgcagaa
     2881 agagcacgcc gctttcgacc ttaatcatgt cgccgcgcaa actcgctgac ccgccgcagt
     2941 agacgtcgat tcttttcccg acaaaccttg ataagaagtt ttccatggct ttggtcttgg
     3001 gccctttaag tctttggctt tgtgggtggg ccttacgcga tttgcctaag accaaagccc
     3061 ttagacctat tttttgaagg ttatatgcac cagcggaatc accttcggat catcctgctg
     3121 ttctcgctcg aaacttaaca ggtcgtaata cgcgcaacgg gtcgtggtag gaaattcacg
     3181 acacacggcc ggacgggcat catagattgt gcagccacgc gtttctgtgt tgatgaactg
     3241 gcaggtctcc ttaaagagca catccttttt gcgtcgcaac acgcgctctt tgttccacac
     3301 tttcgtgtag cgcgatgtcg caacttcttc ggtgacgccg aagtggttcg cgagccggcg
     3361 aatgtcgcga ggcgttacct gaactcggtc ataaaccgaa cagcagtacg caggacaatc
     3421 aacacagtcg tagtaggatt tcttttttcc attcgtggaa atggttccca tggtcgctat
     3481 aggtctccag tcacactatc gtcgttttga tttcttatat tcagcgagca acaacttcat
     3541 gaactcttca cgttgttcgt acagtcgctt tggtttccgc ggctcgtgcc tggttaaagc
     3601 ataagct
//
LOCUS       DATCGC010001803         2730 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_390619, whole genome shotgun sequence.
ACCESSION   DATCGC010001803 DATCGC010000000
VERSION     DATCGC010001803.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2730)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2730)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2730
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_390619"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..388
                     /locus_tag="VIJ87_17215"
     CDS             <1..388
                     /locus_tag="VIJ87_17215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446169.1"
                     /translation="RKSGSLLLLLGIVLASGGIAVAQNGNIDRLERRELRLDRREIRT
                     DTRELRSDRRDLHGDVIDRRGDVRELRQDRREGAGQQELLADRREIRVDSREINRDQR
                     ELRVDRRDRRGDVRDFRQDRRHARRN"
     gene            complement(640..990)
                     /locus_tag="VIJ87_17220"
     CDS             complement(640..990)
                     /locus_tag="VIJ87_17220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446170.1"
                     /translation="MSDQSAGKTGVEEIAADLLDPYEKLVSIEVLGNEVDVPEKNRLL
                     RCFQYLSINTISYGDFCWNGECTNCQIWYHMKGQDESNDRPALSCRLECAEGMVITKL
                     SSFIELEGISKNVR"
     gene            1680..2730
                     /locus_tag="VIJ87_17225"
                     /pseudo
     CDS             1680..2730
                     /locus_tag="VIJ87_17225"
                     /inference="COORDINATES: protein motif:HMM:NF014896.4"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          753 a          676 c          666 g          635 t
ORIGIN      
        1 cagaaagtcc ggtagtttgt tgctattgct tggcatcgtt ctcgcttcag gaggaattgc
       61 cgtagctcaa aatggaaaca tcgaccgttt ggaacgaaga gaactgcggt tagaccgtcg
      121 cgaaataaga actgacaccc gagaacttcg tagcgatcgt cgtgaccttc atggagatgt
      181 aattgatcga cgtggtgatg tacgggaact gcgccaggat agacgtgaag gagcgggtca
      241 acaggagtta cttgcagacc ggcgagaaat ccgtgtcgac tctcgcgaaa tcaatcgtga
      301 tcagcgtgag ctaagagttg atcgacgtga tcgcagagga gatgttcgcg actttcgtca
      361 agatcggaga cacgccagac gaaactaact ctaagcgata gggcagacat tcctgtctgt
      421 ggaccgtgcg attgaaaaga agcggaaaga aacgagtgga agaagaggcg cttccgccgt
      481 gggcacatcc tttctaacaa ttgagcggtg gttggattac aaccaggaag accaaacaga
      541 caggaatgcc tgccctattg cgaaaacgat gtccgatatg ttttagcttg tcgaaaactg
      601 actaacacgc ccccaatgat gataccgaca aactaaagtt tatcggacat tcttactaat
      661 cccctccaac tcaataaagc tgctcagttt tgtgatcacc attccttccg cgcattcgag
      721 ccgacatgaa agtgccgggc gatcgttcga ttcatcctgg cccttcatgt gataccagat
      781 ctgacagtta gtgcactcac cattccagca gaaatcgccg taggaaatcg tgtttatcga
      841 aaggtattga aaacagcgga gcagacggtt tttttccgga acgtccacct cattgccgag
      901 cacctcgata cttaccaact tctcgtaagg atcgagcaaa tcagctgcta tttcctccac
      961 ccctgtcttg ccagcgcttt ggtcgctcat aggcagcggc agtataatcg cacctaacaa
     1021 attttgttag acgaattcgc gcaaccgttt tcattgcgcc actggatcgg caaagaaaac
     1081 tttgggagat cacgacgttg gctttagtca tctatacaaa accgggttgt ccttattgtc
     1141 agcaggcgcg agaccactac aattccaagg gaattgcttt tatagactac gacgctcaaa
     1201 ccaaccgcgc gcatcgtgcg gaaatgttca agtactcgaa tggggatccc accgttcctt
     1261 gtattgtgga agatggtaag tacctgggat ctgggtgggg taatccgcga agaggttgaa
     1321 cggtccacga ttagccagcc gtgtgctggt aaaacaaaaa acttcgagtc tccccagtta
     1381 cacggcccaa attgccccct tgaactgtga aaacagttca gtgtgatcaa aagcactttt
     1441 tgaccactag ttagcgggta ataaaacgaa gcgtcttgtg cgtttcgttc tgattctgac
     1501 ctgatttcac tagaagaagg tgctccatga ctaaatcaag actcctgcta ttcgcgtttg
     1561 tcttttcatg tgtgttctca attacacttg acgcgaaagc acaatcaaat ggaggcgttg
     1621 cgcctcaacc accaatgaca gaaaagaaac ctaaaacgac agcgattcac ggcgtgacca
     1681 tggtcgacga ctatttctgg ctccgcgaga agacaaatcc ggcagttatg gcccaccttc
     1741 aggctgagaa cgattacgcc gatgccttga tgaagccgac tgagcagctt cagcaaaagc
     1801 tctacacgga gatgttgagc cacatcaaac agactgacac caatgtccct tatcgctggg
     1861 gaaatcattt ctactacacg agaactgtcg aggggctgca gtatccgatc ttttgtcgga
     1921 agcgcggcag cgtcgatgct cccgaagaaa tcgttctaga tcagaatgag ctcgcgaaag
     1981 gtcagaagtt catgagcgtc ggtgcttttg tgccgagtga cgatggaaac ctattagctt
     2041 attcgaccga caacactggc tatcgacaat acacgcttca gatcaaagat cttcgcaccg
     2101 gataagtctt tcccgagcgg atcgagcgag tgaacaacgt cgcctgggcc agcgataaca
     2161 agactctctt ctatgtaaca gaagatgcga ccacgaagcg cagcgacaag tttttccgtc
     2221 acgtcctggg aaccgataag aatgagttga tcttcgaaga gaaggatgag ctctatgata
     2281 tcgggacctg gcgtactcgc gacaacgcca tcatctttct ggagtcagcc agcaagacgt
     2341 ctactgaagt tctctatatc ccggcggaca aaccggcttc agaactgaaa gttgtcatac
     2401 ctcgcgcagc ggaacacgag tacgacgtgg atcaccgcgg caatctcttt tacattcgat
     2461 cgaacaagaa cgcgaagaac ttccgagttg tcactgcacc agtcgatgat ccatctgaga
     2521 agaactggaa agagtttatt ccacacaaac tcgcagtgaa gattgagaat tttaccctgt
     2581 tctctgatca cgctgtcgtc tccgaatggg agaacggact ccagcaactt gagatcgttg
     2641 atctcaagac taataaacac aaccggattc aatttcccga accggtgtac tccgcgggac
     2701 tcaatgcgaa tcgcgtgttc aatacaagcg
//
LOCUS       DATCGC010001804         3985 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_257898, whole genome shotgun sequence.
ACCESSION   DATCGC010001804 DATCGC010000000
VERSION     DATCGC010001804.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3985)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3985)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3985
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257898"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..195)
                     /locus_tag="VIJ87_17230"
     CDS             complement(<1..195)
                     /locus_tag="VIJ87_17230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446171.1"
                     /translation="MAKVVRIIARLNVGGPAKHVVWLTSGLSEYQTLLVAGTVPEGEG
                     DMGYFAEQSNVVPHFIPEMSR"
     gene            complement(305..790)
                     /locus_tag="VIJ87_17235"
     CDS             complement(305..790)
                     /locus_tag="VIJ87_17235"
                     /inference="COORDINATES: protein motif:HMM:NF013103.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008830 - dTDP-4-dehydrorhamnose
                     3,5-epimerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HEY5446172.1"
                     /translation="MSDTFRTGEIHGVIIKSLSRFNDSRGWLTELFRIDEWPAEFHPA
                     MAYLSSTIPGVTRGPHEHVDQADLFCFLGPATFKLRMWDNRADSETFGNVHTILVGQE
                     NPAVVLVPKGVVHAYQNVGEVDGIVVNCPNRLYMGDGKKEPIDEIRHEDDSETRFVMS
                     D"
     gene            complement(783..1589)
                     /locus_tag="VIJ87_17240"
     CDS             complement(783..1589)
                     /locus_tag="VIJ87_17240"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HEY5446173.1"
                     /translation="MVPKIYRLTELEVFTLKGVVLAGGLGTRLRPLTSVTNKHLLPVF
                     NQPMIYYPIQTLVNAGISDIMVVTGGNSAGEFLRLLGNGKAFGLKHLNYTYQEGEGGI
                     ADALSLVEHFASGEPVCVVLGDNIIEGNIAAAVRAYRHQGGGAKIILKKVTDPQRFGV
                     PKLEGRKVITIEEKPSKPQSDYAVIGIYMFDGEVYNIIRTLEPSGRGELEITDVNNAY
                     IARAEMTWEELDGWWTDAGTFESLLHASNLVAQTGANKLEFSSGEVPTNV"
     gene            complement(1565..3445)
                     /gene="asnB"
                     /locus_tag="VIJ87_17245"
     CDS             complement(1565..3445)
                     /gene="asnB"
                     /locus_tag="VIJ87_17245"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HEY5446174.1"
                     /translation="MCGIVGLVRNDGKPIDEGLLARMNEAIRHRGPDEDGFYVNGSVG
                     LAMRRLAIIDLKSGQQPIHNRDRTAWIVFNGEIYNYLELREKLEKLGHTFYTNSDTEA
                     IVHAYDQYGSDCPKHLRGMFAFAIWDERTQELFLARDRVGKKPLLYAEVNGQLVFGSE
                     FSAILLHPDVSKEIRPEAIDCYLSFMCVPAPLTAYRAIKKLEPGHSLRWRKGELKTER
                     YWQPDFSKKLDIGEEEAGERAIEILRDAVKVRLMSEVPLGAFLSGGIDSSAVVALMSQ
                     ESSEKVKTFSIGFEEQDFSELQHAKRIAEHVGADHHEFIVRPDAVEILPMLVEHYGEP
                     YADSSAVPTYYVARETRRHVTVALNGDGGDESFAGYERYIAMGLTEKYRKVPAFFRES
                     LIKEAVNRIPTSPIRKSTVNSAKRLLEVVSKPRVNRYMHWMSVFNEGLKEPLYSEAFR
                     EQTDRAFAASFLDTWFKKANGNGPVDTLLLTDLMTYLPNDLLVKVDIATMAVSLEARS
                     PFLDHHVIEFAASLPERLKLRRLTTKYLLKKVLRRLLPAENLDRRKMGFGVPIGHWFR
                     GKMQPFLREVVLSDKALRRGFFKPEVVKQLVEQHTRSERDYSHQLWTLLMLELWFLRF
                     ID"
     gene            3686..>3985
                     /locus_tag="VIJ87_17250"
     CDS             3686..>3985
                     /locus_tag="VIJ87_17250"
                     /inference="COORDINATES: protein motif:HMM:NF025664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446175.1"
                     /translation="MSDILTTPKLVSPFGGQLIDLTVPETELSDALAKAKELRSIQLS
                     ERSLCDLELMATGAFSPIDRFMGREDYRRVVAEMRLRSGQLFPIPITLPIRDDLQI"
BASE COUNT          943 a         1076 c          956 g         1010 t
ORIGIN      
        1 ccgactcatt tccgggatga agtgaggaac cacgttggac tgttctgcga agtagcccat
       61 atcgccttcg ccttcgggaa cggttcccgc aaccagcaac gtttgatact cactcaatcc
      121 ggaggttaac cagactacat gtttcgccgg tccaccaacg ttgagccgcg cgataatacg
      181 cacaaccttt gccatagaag ttttagaatt tcgaattttg tgaccctcga cttcgctaaa
      241 acatcagctt cactagcggc gctggttagc gaatcgcgca ccccaaattc gaaatcctca
      301 atgcttaatc actcatcaca aaccgggtct cgctatcatc ctcgtgtctg atttcgtcaa
      361 tgggttcctt ttttccgtca cccatgtaaa gacgatttgg acagttgacg acgatgccat
      421 ctacctcccc gacgttctga taagcatgca cgacgccttt gggaaccagg accacagccg
      481 gattctcctg gccgacgagg atcgtatgaa cattgccaaa cgtctcagag tccgcccggt
      541 tgtcccacat cctcaatttg aaggttgctg gtccgaggaa gcaaaaaaga tcggcctggt
      601 cgacgtgttc atgaggtccg cgtgtaacgc cgggaatagt cgatgaaaga taagccatcg
      661 ccggatgaaa ttcagcaggc cattcatcga ttctgaatag ttcagtcaac caaccgcgcg
      721 aatcattaaa cctggataac gacttgatta ttactccgtg gatctcgcca gtccgaaacg
      781 tgtcagacat tcgttggaac ctcccctgac gagaactcca gtttgttggc tccggtttgg
      841 gccaccaaat tcgacgcgtg gagcaaactt tcaaacgtgc ccgcatcagt ccaccaaccg
      901 tcgagttctt cccaggtcat ttcggcgcgc gctatgtagg cgttgtttac gtctgtgatt
      961 tcaagttcgc cgcgccctga gggttccagc gtgcgaatga tgttatagac ttcgccatcg
     1021 aacatgtaga tcccaatcac cgcgtagtct gattgcggtt ttgagggttt ctcttcgata
     1081 gttatcacct ttcgcccttc gagttttgga acgccgaacc tttgtggatc ggtgaccttc
     1141 ttcagaatga tcttggcgcc gccaccctgg tgacgatagg cacgaacagc cgctgcaata
     1201 tttccttcga ttatgttgtc gcccaaaaca acgcaaacag gttcgccgga agcgaaatgt
     1261 tcgaccagcg atagggcatc cgctataccg ccctcgcctt cctggtaagt atagttgaga
     1321 tgtttcagtc caaatgcctt gccgttacca agcaggcgca gaaactcccc ggccgagtta
     1381 ccaccggtta caaccatgat gtcagagatc ccagcattga ccagcgtctg aatcgggtaa
     1441 tagatcatcg gctggttgaa aacggggagc aaatgtttgt tagttaccga agtgagagga
     1501 cgcagtcgcg tccctaaacc tcctgccaaa accacacctt tcaaggtgaa tacctccagc
     1561 tctgttagtc gataaatctt aggaaccaaa gttcaagcat caacaaggtc cacagttgat
     1621 gagaatagtc gcgttcggag cgtgtgtgct gttcgaccag ttgcttcacc acttctggct
     1681 tgaaaaaacc acgacgcaag gccttgtctg acaacactac ttcccgcaag aatggctgca
     1741 tcttacccct gaaccagtgt ccaatcggaa ccccgaatcc catttttcgg cgatcgaggt
     1801 tctcggcagg tagcagccgt cgcagaactt tcttcaacaa atatttagtc gtcaaccgtc
     1861 ggagctttaa acgttcaggc aaacttgccg cgaattcgat tacatgatga tcgagaaatg
     1921 gtgaacgagc ttcaagcgat acagccatcg tagcgatgtc gacttttacc agcaggtcgt
     1981 ttggcaagta ggtcattagg tcggtcaaca acagcgtgtc aaccggtccg tttccgtttg
     2041 cctttttgaa ccaggtgtcc agaaaactag ctgcaaatgc tctatcagtt tgttcgcgga
     2101 acgcctccga atagaggggt tcctttagcc cctcgttgaa gacactcatc caatgcatgt
     2161 agcgattcac tcgtggcttt gagacaactt cgagtagacg ctttgcagag ttgaccgtgc
     2221 tcttccttat cggtgaagta gggatcctat tcaccgcttc cttgattagt gattcgcgga
     2281 agaaggccgg cacttttcga tacttctccg tcaagcccat cgcaatgtaa cgctcatacc
     2341 cggcaaatga ttcatcacca ccatcgccgt ttagagcgac tgtcacgtga cgacgggttt
     2401 cgcgagcaac gtagtaagtg ggcacagctg acgagtcagc gtaaggctcg ccataatgct
     2461 cgacgagcat cggcagaatt tcgactgcat cgggccgcac gataaactca tgatggtcgg
     2521 cgcccacgtg ttccgcgatc cgcttcgcgt gttgaagttc gctaaagtcc tgctcttcaa
     2581 aaccaatcga gaacgtcttt accttctcgc ttgattcctg gctcatgagt gcgacgactg
     2641 cacttgagtc aattcctccg gaaagaaaag cacccaacgg cacttcagac atcaggcgca
     2701 cctttacggc atctcgcaaa atctcgatgg cccgttctcc agcttcttct tcaccgatat
     2761 caagcttctt tgaaaaatcc ggttgccagt atcgttcggt tttcaattca cccttgcgcc
     2821 agcggagcga gtgtccaggc tctaacttct taatcgctcg atatgcagtc agcggcgcgg
     2881 gaacgcacat aaacgataag tagcaatcga tcgcttcagg ccgaatctcc ttgctgacgt
     2941 cgggatgcag gagaatcgca ctgaattccg atccaaaaac cagttggccg ttaacttctg
     3001 cgtagagaag tggcttctta ccgacacgat cccgagcaag gaacagttcc tgggttcgtt
     3061 catcccagat tgcaaaagca aacatcccgc gcagatgctt cggacaatca gaaccgtatt
     3121 gatcgtaagc gtggacaatc gcttcggtgt cgctgtttgt gtaaaaggtg tgaccgagtt
     3181 tttcgagctt ttcgcgtaac tcgaggtagt tatagatttc gccgttaaag acgatccagg
     3241 cggtgcgatc acggttgtgg atgggctgct gaccactctt gaggtcaatg atcgcaaggc
     3301 gtcgcattgc caaaccgaca gagccattga cgtagaaacc gtcttcgtct gggccgcggt
     3361 gacgaatcgc ctcgttcatc cgagccagca atccctcgtc aatcggtttt ccgtcgttgc
     3421 gaacgagtcc tacgatgcca cacatatgtt gattggcgta atgactttcc gtgggtcaga
     3481 gtttgtttcg aaggctatat tagcgcgccc ggagtaacac tgtccaaaac gccctctatt
     3541 gagcagcaga gcgttgttag tgatcgggat acctcaagtc tggattctca acgactatgt
     3601 taagattttc tgtgtggtcc ggtttcagtt cttcccttcg taatcacggc accgctctta
     3661 tacattctgt tgagtccaca tatcagtgtc tgacatccta acaactccga aactagtctc
     3721 tccatttggt ggccagctca tcgatctaac cgttccggaa actgaactca gtgatgcgct
     3781 cgctaaggca aaagagcttc gctcgattca gctttcagaa cgctcgctct gcgatctgga
     3841 gttgatggct actggagcat tcagtccgat cgatcggttt atgggtcgtg aagactaccg
     3901 gcgcgtggtt gccgaaatgc gtttgagaag tggtcaactg tttcccattc ccatcacttt
     3961 gccgattaga gacgaccttc agatt
//
LOCUS       DATCGC010001805         1126 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_459310, whole genome shotgun sequence.
ACCESSION   DATCGC010001805 DATCGC010000000
VERSION     DATCGC010001805.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1126)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1126
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_459310"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..604)
                     /locus_tag="VIJ87_17255"
     CDS             complement(<1..604)
                     /locus_tag="VIJ87_17255"
                     /inference="COORDINATES: protein motif:HMM:NF036808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446176.1"
                     /translation="MKTVKVNKRGAVRIRQGHLWIYRSDVVAVDAEGGSVVSVVDEAG
                     NFVGQALFSNLSQIALRFLTLSKEEIDQAWWRRRIKDSVERRNVPSDTDAYRLVYSEG
                     DLLPSLIVDRYADVLVLQTLSQGTDAVKSLLTEILVEEFSPRAIIERNDAKVRQLEGL
                     PMIAGNLYGTAPEEFEILQHGLKFVVAPGGGQKTGSFLDQR"
     gene            820..>1126
                     /locus_tag="VIJ87_17260"
     CDS             820..>1126
                     /locus_tag="VIJ87_17260"
                     /inference="COORDINATES: protein motif:HMM:NF013781.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HEY5446177.1"
                     /translation="MTTKTKDERRTRFETPSGIEYPVDFNPSNTDPINYEDDLGSPGE
                     FPYTRGIYPNMYRGRLWTMRQYAGYATAEEYNARYKYLLSHGTTGLSVAFDLPTQIGL
                     "
BASE COUNT          261 a          344 c          265 g          256 t
ORIGIN      
        1 ctcgttggtc gagaaacgac ccggtcttct gtccgccgcc tggagccact acgaacttca
       61 atccgtgttg cagaatctcg aattcttcag gcgccgttcc atacaagttg ccggcaatca
      121 tcggcaaccc ttcaagctgc cgcaccttcg catcatttct ctcgatgatt gcccgtggtg
      181 aaaactcctc gacgagtatc tcggtcaaca acgacttaac agcatcggtt ccttgcgaca
      241 gcgtctgcag cacgagcacg tcggcgtatc gatccacgat cagcgatggc agcaggtcgc
      301 cttctgagta aacgagtcga taggcgtccg tgtcgctcgg aacgttcctt cgctcaacgc
      361 tgtctttgat tctgcggcgc caccaagcct gatcgatctc ttcttttgac aacgtcagaa
      421 aacgaagcgc tatctgcgac aagttgctga acaacgcctg accaacgaag ttacccgctt
      481 catcaacaac ggaaactact gaaccacctt ccgcgtcgac tgcaacgacg tcgctccgat
      541 agatccacag gtgaccctgc cggatcctga cagcaccgcg tttgttgacc ttcaccgttt
      601 tcatcgcggg atactgttac atgaagcaat cactttgtca ccgggcgcct ccttggagtg
      661 cggcggcccg gcgccgcttt gttatatcga cagtcattgt gtcgaggatc gcactaacaa
      721 agcggtgcca ggccaccgca ctccaaggag gcgagttcag ctgtaacaaa ttgcgagccc
      781 gaattgcgct atgctaggct tcgaccgctt cattccatca tgacaaccaa aacaaaagac
      841 gagcgacgaa cgcgtttcga aactccttcc gggatcgaat accccgtcga cttcaatcct
      901 tccaatacag atccaatcaa ttacgaagac gatttgggtt ctcccggcga gtttccctac
      961 acgcggggca tctatccaaa catgtatcgg ggacgactct ggacgatgcg ccagtatgcc
     1021 ggctacgcaa ctgctgaaga gtacaacgcg cgctacaagt atctactttc tcacggcaca
     1081 actggactct cagtagcttt cgatttgccg actcagattg gtctcg
//
LOCUS       DATCGC010001806         1580 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_327672, whole genome shotgun sequence.
ACCESSION   DATCGC010001806 DATCGC010000000
VERSION     DATCGC010001806.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1580
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_327672"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            74..442
                     /locus_tag="VIJ87_17265"
     CDS             74..442
                     /locus_tag="VIJ87_17265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446178.1"
                     /translation="MKRHNLIAFLLVPLALSQAVSASDMRKTSTGKAETAAIVSAATD
                     YVKRNSDRNMEFRITIEDVSGDFARARVDPLKKETDPALVYLKRAGGKWEGLIIGTSF
                     QNSDLKELGVPKNLWRWNHD"
     gene            526..939
                     /locus_tag="VIJ87_17270"
     CDS             526..939
                     /locus_tag="VIJ87_17270"
                     /inference="COORDINATES: protein motif:HMM:NF014084.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF120 domain-containing protein"
                     /protein_id="HEY5446179.1"
                     /translation="MSELLAGKVQAGFGDASRWLKLFNAAYSEKLGMSVFPGSLNIAL
                     DRVFNWFDARYEPHRIWFGREEYGGERDILLLPCELVSLDHQKAFLWTPTTAARDRRD
                     PWVVEIVADVNLRNHFGLQDGDVIEIRVPTGSDQR"
     gene            1061..>1580
                     /locus_tag="VIJ87_17275"
     CDS             1061..>1580
                     /locus_tag="VIJ87_17275"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013087.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY5446180.1"
                     /translation="MTERSIAAYDVSQRVKTYDADMELMHPNRSKMVQIALEVLPFPK
                     TAVLRAIDLGIGTGYFTECFLNKFPNSRVLGIDGAPAMIELAKARLKSLESRVEFVIG
                     DFRKLHELAPDAGTADIVFSAYALHHLSRFDKEMVLTQVVELLAPGGWFVNADLIIAD
                     SPELESRLQELRI"
BASE COUNT          383 a          375 c          434 g          388 t
ORIGIN      
        1 aaacacactc gtttcaagcc agccttgccg ccattagcgg tggcctgatc ttgtgtctcg
       61 ttaggcgata cttatgaaac gccataatct gattgcattt ctgttagtcc ctttggctct
      121 atcacaagct gtatccgcaa gcgatatgcg taagacttca acagggaaag cagagaccgc
      181 cgcaattgta tctgctgcga ctgattatgt gaaaagaaat tcggatcgaa acatggagtt
      241 tcgcatcact attgaagacg tgagtggcga ttttgcgcgt gcccgagtgg acccgttaaa
      301 gaaagaaaca gatcccgctc ttgtttattt gaagagggcg ggaggtaaat gggagggact
      361 tatcatcggg acaagctttc agaattcaga tctcaaagag cttggcgttc ccaaaaacct
      421 ttggcgatgg aatcatgatt agatcggagc tgagcatcgt gagatcagtg catacgcggc
      481 ctaacaacaa atttcagccg tgaccgaccc tggtgctaaa ccagcatgag cgaacttctc
      541 gcgggcaagg ttcaggcagg cttcggcgac gcctctcgct ggttgaagct ttttaatgcc
      601 gcctacagcg agaagctagg aatgtctgtg ttcccaggct cattgaacat cgcactcgat
      661 cgcgtgttca attggtttga tgcgcgttac gaacctcaca gaatttggtt cggtcgagaa
      721 gagtacggcg gtgagcgcga catactgctg cttccctgcg aactagtgag tttagatcat
      781 cagaaagcgt tcttgtggac gccgacgact gcggcaaggg atcgacggga tccctgggtc
      841 gtcgagatcg tcgctgacgt caatctgaga aatcatttcg gtttgcagga tggggatgtg
      901 atcgagatca gagtgcccac cggaagcgac cagagatgat catggacaaa cgaaaataga
      961 atcgcgtcgc catcttccgt agcttatttt tcgttcgcaa ggcgcggcaa ccgagggcga
     1021 gcgttgccga agtgctgggt tacgcaaaca atttctttca atgactgaac gaagtattgc
     1081 ggcttacgat gtatcgcagc gcgtcaaaac gtacgacgcc gacatggagt tgatgcaccc
     1141 gaatcgatca aagatggtgc aaatcgctct tgaggtgttg ccttttccca agacagcagt
     1201 tcttcgagca atcgatttag gaatcggtac tggttacttt actgagtgct ttctcaacaa
     1261 gtttccgaac agccgtgtgc tcggcattga cggcgctccg gccatgattg agctggcgaa
     1321 agcgcgccta aaatccttgg agtcgcgagt cgagttcgtc atcggagatt ttcgaaaatt
     1381 gcacgaactg gctccggacg ccggtactgc agatatcgta ttttctgcgt acgcgcttca
     1441 ccatcttagt cgcttcgata aggagatggt actaactcag gtggttgagc tccttgcgcc
     1501 gggcggttgg ttcgtgaacg cggacctgat tattgccgat tcaccggaac tagagagccg
     1561 gttacaggaa ctccgcatcg
//
LOCUS       DATCGC010001807         1148 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_93670, whole genome shotgun sequence.
ACCESSION   DATCGC010001807 DATCGC010000000
VERSION     DATCGC010001807.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1148)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1148)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1148
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93670"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            529..>1148
                     /locus_tag="VIJ87_17280"
     CDS             529..>1148
                     /locus_tag="VIJ87_17280"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY5446181.1"
                     /translation="MSYSRLELNGKVAVVIGGTSGIGLAIAKGMAEAGADVVPTSRRA
                     EQVEAAAKEIEARGKRSIQIASDVSERASLQNVLDETVKAFGKVDIMVNSAGRTKRAP
                     TLDFTDEDWNSIIDTNLTGTLRAAQVFGRHMLERQYGSIINIASLSTFVALYEVAAYS
                     ASKAAVASLTKSLAIEWGPRGVRVNAIAPGVFRTPLNEKLLDETERG"
BASE COUNT          308 a          289 c          296 g          255 t
ORIGIN      
        1 tgtgggatga gttcagcgag agagttggaa gaagaacccg catgagagag ccacacattc
       61 ccgcccgcta cgcgcttccc aatccgttgt ttactagttg ccgacacgaa caaattcccc
      121 gagctttcgc tgacgactaa aaaaggtttc aaaaagcgcc tcgccttcga aacccgcacc
      181 aagcttcttc aagatcagac tggttagacc aatctgattg tttgaccacg actttaacat
      241 gcgtggataa actacacaag cgtcaaattt gtccagtttt cgtgaatgaa atctctcaat
      301 ttcttagacg tctggggact ttttgggctt gacgcgagct gagacgcgat gttacacagt
      361 atgcgcctaa ttcagaagtg gtctaacctt taaccgataa attctcctgc gtccactaag
      421 gctgtcgact ttaaaaagcc ttgagggcgg aagactaaac tcggttagaa ttggcactcc
      481 aaaaacgccc ggactatcaa aaaagttaca aggtcaaaag actattctat gagctattcg
      541 cgtctcgaac ttaacggcaa agttgccgtc gtaataggcg gaacctctgg gatcgggctc
      601 gccattgcaa aaggcatggc cgaggcagga gccgatgtcg ttccaacttc acgccgggcg
      661 gaacaggttg aggccgctgc gaaagagata gaggcgcgag gcaagcggtc gattcagata
      721 gcctcggacg tctcggagcg ggcgtcactt caaaacgtac ttgatgagac tgtaaaggcg
      781 tttggcaaag tcgacatcat ggtcaattcg gctggtcgca ccaagcgggc acccacgctg
      841 gacttcaccg atgaagactg gaacagcatt atcgacacaa accttacggg caccctacga
      901 gcggcacagg tttttggtcg gcacatgttg gagcgacagt acggcagcat catcaacatc
      961 gcttcacttt cgacctttgt ggctttatac gaagtagctg cgtactcggc cagcaaagca
     1021 gcagttgcat cactaactaa gtctctggca atcgagtggg gtccacgggg agttagagtg
     1081 aatgcaatcg cgcctggagt tttccgcaca ccacttaacg agaagctgtt agatgaaacc
     1141 gaacgcgg
//
LOCUS       DATCGC010001808         1314 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_423539, whole genome shotgun sequence.
ACCESSION   DATCGC010001808 DATCGC010000000
VERSION     DATCGC010001808.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1314)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1314)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1314
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423539"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1282)
                     /locus_tag="VIJ87_17285"
     CDS             complement(<1..1282)
                     /locus_tag="VIJ87_17285"
                     /inference="COORDINATES: protein motif:HMM:NF019239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5446182.1"
                     /translation="MTTELQGSQDPFNVIFHEYTHLLVNNTIGNAPVWFNEGLAEYYS
                     TFSISNDQKIVLGDPIGNHVFLLRDSKMLPLRTLFQVDYKSPHYNERNKQSIFYAQSW
                     ALMHYLIIGKPGRLEQLSVFLDRIMSNVPMEAAFQEAFQMSFEAMEKELRDYVRQNRY
                     NILRAHFERKLDMDAELKSAPISEAEAQAYLGDLLLHSNRKDSEAYLAKALALDPNSP
                     MANAAMGMAKLRDGNPGEALVNLEKAVTANSQNYLVHFYYASALSKLGGSSSQPITGY
                     APEVAAKIRQELLKAIELRPDYPGSYNLLGFVSLVTGNNMDEAVTLLTRALKAAPGRN
                     ELAFMLAQLYGRKGDYKTARQLLEQVTKSTSEEELRQHAKMVLKQLVAMQEQIESYER
                     NRKSDSTRSTSGTASTTIVVNSDEVTAAPQDPSSY"
BASE COUNT          273 a          323 c          364 g          354 t
ORIGIN      
        1 gatatgacga tgggtcttgc ggcgcagccg tgacttcatc agaattgacg acgattgtgg
       61 tagaagcggt tcctgaagtg ctacgcgttg aatcggactt tctattgcgc tcataggact
      121 cgatttgctc ctgcattgcc acgagttgct tcagaaccat cttcgcatgc tgacgcagtt
      181 cttcttctga tgttgatttt gtgacttgct ccaacaattg ccgcgccgtc ttgtagtcgc
      241 cctttcgccc gtagagctgc gcaagcatga aagccagttc gttccttcca ggcgcagctt
      301 tgagtgcccg ggtcaaaagc gttaccgctt cgtccatgtt gtttccggtg accagactga
      361 caaacccgag aaggttgtaa gacccgggat agtcgggccg cagttcgatc gccttgagca
      421 actcctggcg aatctttgcg gcaacctctg gagcataacc agtgattggc tgagaactgc
      481 tgccaccgag tttgctaagc gctgatgcat agtagaagtg gaccaaatag ttttggctgt
      541 tagcagtgac cgctttttcg aggttgacca atgcttcgcc tgggttgccg tcgcgtaact
      601 tggccatacc catcgccgcg ttcgccatcg gtgaattcgg atcgagggcc aacgccttag
      661 cgaggtacgc ttcgctgtct ttgcgattgc tgtggaggag gagatcgccg agatatgcct
      721 gggcttccgc ttccgaaatc ggcgcagact ttagttcggc atccatatcc aacttgcgtt
      781 cgaagtgtgc acgaagaatg ttgtagcgat tttgccgcac atagtcgcgc agctcttttt
      841 ccattgcttc aaaactcatc tggaaggctt cttgaaacgc agcctccatc ggcacgttcg
      901 acatgatccg gtcaaggaat acactcagtt gttcgagtcg gccgggtttg ccaatgatga
      961 ggtagtgcat caacgcccac gactgcgcat aaaagatgct ctgcttgttt cgctcattgt
     1021 agtggggtga tttgtagtcg acctgaaaca gagttcgcag cggaagcatt ttgctgtcgc
     1081 gcaaaaggaa aacatggtta ccgatgggat cgcctaatac gatcttctga tcgttgctga
     1141 tgctaaacgt gctgtagtac tcggcgaggc cctcgttgaa ccataccggg gcgttaccta
     1201 ttgtgttgtt gacgaggaga tgtgtgtatt cgtggaagat gacattgaac gggtcctgtg
     1261 acccttgaag ttctgtcgtc atcgagatgt agttaacgtc ggggcctggt tgaa
//
LOCUS       DATCGC010001809         1528 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_360580, whole genome shotgun sequence.
ACCESSION   DATCGC010001809 DATCGC010000000
VERSION     DATCGC010001809.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1528)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1528)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1528
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_360580"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            190..>1528
                     /locus_tag="VIJ87_17290"
     CDS             190..>1528
                     /locus_tag="VIJ87_17290"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY5446183.1"
                     /translation="MKTRRTLLVATLVMAAQLSWLSPTFQVVRAISPDDSAFEKTFAQ
                     KFNAIAIENASGRTEVETWNSNRVRVTATRSPARAAIVPLEGRIRFQITDSDLRIIVR
                     GERTDDPVHLVVFVPRQVNLAIKGETETIAIKGITNSLTVETESGPISLHLPKAADTD
                     LSLRSIEGAISSQLQMRVFGPVNAHSLDGRTGRGGTPVILRSMTGPVSLFAEEAGRIA
                     RADARAASDVNGVMTPTGMTGSAPVDDGANSAAMASTTFNPPAPPSLGPANASDPPVA
                     DVIKIDSRLVNLNVRVTDNAGKLIPDLSKADFRVFEDNVEQEVVRFEPVTSPVAVVLL
                     LDASGSTKDRWKVIRKAAKTFIDTLSPNTPIAVAAFTRRFLMICDFSCDRRVMKERID
                     DTKNLQSGTAFYDATWSAMNLFKEVKEQRKAIVVMTDGVDNSLSSEDYEPKHPF"
BASE COUNT          377 a          396 c          392 g          363 t
ORIGIN      
        1 tgtaatcggc gtaatctgcg gatgattgtt tttcgcctca atcggccaac tttcctgtta
       61 acgctttcct cctcagccgc gtctgttaca tttgaggtcc aacagttctg cgctgctctc
      121 gttgaaactt gctccttcct caagacctca ggactggacg agtttcggcc cacattccta
      181 aagaaaaaca tgaaaactcg tagaactctg ctcgttgcaa cccttgtgat ggccgcgcag
      241 ttgtcctggt tgagcccgac gtttcaagtt gtcagggcaa tctctccgga tgattccgct
      301 tttgaaaaaa ccttcgcgca aaagttcaat gcgattgcga tcgaaaatgc cagcggccgg
      361 acagaggttg agacctggaa cagcaaccgg gttcgggtta ccgcaacacg ttcgcctgct
      421 cgagctgcga tagttccgtt agaagggcga attcgatttc aaataaccga ctccgatttg
      481 cgaatcatcg tgcgtgggga aagaaccgat gacccagtcc acctggtggt ctttgtcccg
      541 cgacaagtga atctcgcaat caagggagag acagagacta ttgcaatcaa gggcatcaca
      601 aattcgctca ccgtagagac agaatcaggt cctatctccc ttcatctccc taaagccgcc
      661 gatacagatc tctccttgcg atcaatcgaa ggagcaattt catcacaact ccagatgcgg
      721 gtgtttggtc cagtcaatgc gcatagtctt gacggtcgca ccggccgcgg cggtactcct
      781 gtaattcttc gcagtatgac cgggccagtt tcgctgtttg ccgaggaagc gggaagaatt
      841 gcccgtgcag atgcgcgcgc agcgagcgat gtaaatggag ttatgactcc aactggcatg
      901 actggatcag ccccggttga cgatggtgcg aattcagctg cgatggcatc gaccactttc
      961 aatcctccag cgccgccttc gctcggtcca gcaaacgcaa gcgatccgcc tgttgccgat
     1021 gtcatcaaga ttgatagtcg attggtgaac ctcaatgtca gggtcactga caacgcgggc
     1081 aagttaattc cagatttgag caaagctgac tttcgcgtct ttgaagataa cgtagaacaa
     1141 gaagtcgtca ggtttgaacc tgtcacatca ccagtggcgg ttgtgttatt gctcgacgca
     1201 agtggcagca cgaaggatcg ttggaaagtt atcaggaaag ccgcaaagac gttcatcgat
     1261 acgctcagcc caaacacacc gatcgccgtt gcggccttca cacgcaggtt tttgatgatt
     1321 tgtgacttct cgtgcgatcg aagagtgatg aaggagagga ttgacgacac caagaacctg
     1381 caatcgggaa ctgcttttta cgatgcgacc tggtcggcaa tgaacctatt taaagaagtg
     1441 aaggaacagc gcaaggctat cgtcgtgatg actgacggtg tcgacaattc gctatcgtcg
     1501 gaagattacg aacccaaaca tccgttcg
//
LOCUS       DATCGC010001810         2433 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_459369, whole genome shotgun sequence.
ACCESSION   DATCGC010001810 DATCGC010000000
VERSION     DATCGC010001810.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2433)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2433)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2433
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_459369"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..187
                     /locus_tag="VIJ87_17295"
     CDS             <1..187
                     /locus_tag="VIJ87_17295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446184.1"
                     /translation="SGVMGILVSEPSSQATAPRVEQLRESLEAEENSRQHANLTLQRP
                     SLSMTTRLRSRLGGSDV"
     gene            266..340
                     /locus_tag="VIJ87_17300"
     tRNA            266..340
                     /locus_tag="VIJ87_17300"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:298..300,aa:Val,seq:tac)
     gene            428..504
                     /locus_tag="VIJ87_17305"
     tRNA            428..504
                     /locus_tag="VIJ87_17305"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:462..464,aa:Asp,seq:gtc)
     gene            complement(625..>2433)
                     /locus_tag="VIJ87_17310"
     CDS             complement(625..>2433)
                     /locus_tag="VIJ87_17310"
                     /inference="COORDINATES: protein motif:HMM:NF037660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5446185.1"
                     /translation="EVLKEYFRDKHLLLVLDNFEQVLSAASDIAALLTAGSLKVLVTS
                     REVLHLSAERKFVVLPLAVPTEKSKESIEDLQNFEAVALFVERARSVRPGFTLTEENA
                     ASVVDICMQLDGLPLAIELAAARMKILSVQTIQAKLGNSLTLLTGGPRDVPARQQTMR
                     GAVEWSYDLLTEEERCMFRQLSVFAGGFTLQAAEAICDYWSTENIEVLDLITSLVDKS
                     LLVSKLHTNRELRFRMLGVVREYAGDFLETSGNAEEMRERHAIYFLALGEADLYSDSV
                     KANQWIDQLKEERYNLRAALRWSLVNDPEIAARLAAGLRDFWILQGYVTEGREWLEEA
                     LRRANEVPASVRRKVLIAAGRLAQLQGDREKARNLYEEGLASARAAGDLHQLALASRG
                     LGATAYLQGDFRAAREYVEEALLISRELNDRFAIAASVNRLGDLALMEENYATAQMLF
                     DESIAIFRKLGNKNSVSNTLNNLGAVTFAGGDHKAARMYFVEAITTAQEFGGKIVISH
                     SLDGLAALAVERGDSQRAARLAGAAEELRQVIGFQREPAETRFRDTYLTKLRQTLGEP
                     KLMVAYEQGRQLKLDEAIALALTSDETPTKAISAGN"
BASE COUNT          523 a          686 c          631 g          593 t
ORIGIN      
        1 aagtggggtc atggggattc tagtatcgga gccctctagt caggctactg caccacgggt
       61 tgaacagttg cgcgagtcgt tagaagccga agaaaactct cgtcagcacg caaacttgac
      121 actccaacgt ccttctctta gcatgacgac tcgtttgagg agccgtcttg gcggcagtga
      181 tgtttgaatc gaacgtgcca aacagtattc gacggagcac atccgtcaca atgaagaagg
      241 acagacgaca gggtcttcct ccggcaggca cgtacgtcaa tggtagacgg cttcccttac
      301 aaggaagagg ttgggggttc gagtccctcc gtgcctacca gctttaaacg tccgataaac
      361 ttcagtttgt tgtttagtaa cgagacgaca aactaaagtt tatcggacat tgaaaatcga
      421 tttttgcgga gtcgtagttc agttggttag aacgccggcc tgtcacgtcg gaggtcgcgg
      481 gttcgagtcc cgtcggctcc gccacttaat ggcggtaaaa cgcgtacttt aggcttcccg
      541 agagggaggc cttttgtatt ttgggtggct gtatctggat ttgcacctaa ttggtcactg
      601 actctaccgg ctgtgaagtt ggacctaatt gcctgcgcta atcgcctttg tgggagtttc
      661 gtcggaagtg agcgcaagtg cgatcgcctc atccaatttg agttggcgcc cctgctcata
      721 ggcaaccatc agtttcggtt cgcccagtgt ctggcggagc ttggtcaggt aggtatcgcg
      781 aaaacgcgtc tcggcgggtt ctctttggaa gccaattacc tggcgcaatt cttcggctgc
      841 accggcgagt cgagcggcac gttgtgagtc tccgcgctca actgccaggg cggcgaggcc
      901 atccagagaa tgagagatga ctatcttgcc tccaaattcc tgagccgtcg ttatggcctc
      961 cacgaaatac atgcgcgctg ccttatggtc gccacctgcg aacgtcacgg ctcccaggtt
     1021 gttgagagtg ttactcacag agttcttgtt gccgagcttt ctgaagatcg ctatggactc
     1081 atcaaaaagc atctgagctg tggcatagtt ttcttccatg agcgctaaat ctccaagccg
     1141 gttgaccgag gccgcaattg cgaatctgtc gttcaattcg cggctgatta gcaatgcttc
     1201 ttcgacatac tcgcgcgccg ctctgaaatc tccctgcaga taggccgtcg cgcccaggcc
     1261 cctgctcgcc agcgctagtt gatgcaggtc gcccgcggct ctggccgaag ccagcccttc
     1321 ttcgtacaag ttcctggcct tttcgcgatc gccctgcaac tgggccaacc ttccggccgc
     1381 aatcagaacc tttcgccgca ccgatgcggg aacctcgttc gcccgcctca atgcttcttc
     1441 caaccattcg cgcccttccg tcacatagcc ctgaagaatc cagaaatctc gcaagccagc
     1501 ggcgagccgg gctgctattt ccgggtcatt aaccaatgac cacctcagcg cagctcgcag
     1561 gttgtagcgt tcctctttaa gttggtcgat ccactggtta gctttcacac tgtccgaata
     1621 cagatcggct tcgccgagcg ccagaaagta gatggcgtgc ctttcgcgca tctcttccgc
     1681 attcccgctg gtctctaaaa agtcgcctgc gtattccctg acgactccca acattcgaaa
     1741 acgcagctcg cggttcgtat gtaactttga aacaagcaga ctcttatcaa ccaatgaagt
     1801 gatgaggtcc aggacttcga tattttcggt agaccaatag tcacaaatcg cctctgcggc
     1861 ctggagggtg aagccacccg caaacactga cagttgacga aacatacacc tctcttcttc
     1921 tgttaacagg tcgtaactcc actcgacggc gccgcgcatc gtctgttggc gcgcgggtac
     1981 gtctcgaggc ccaccagtca gcagcgtcag actgttccct agtttcgctt ggatagtttg
     2041 cactgaaaga atcttcattc gtgccgcggc gagttcgatt gccagcggca agccgtccag
     2101 ctgcatgcaa atatcgacaa cgctcgcggc attttcttcg gtcagcgtaa aaccgggtct
     2161 cacacttcgc gctcgttcaa cgaacaatgc gacagcttca aagttctgca gatcctcgat
     2221 cgattctttt gatttttccg ttggcacggc gagcggcaaa acaacgaatt tgcgctctgc
     2281 acttaggtga agaacctcac gactggttac caggactttt agtgatccgg ctgtaagcaa
     2341 cgcggcgatg tccgacgcgg ctgataagac ttgctcgaag ttgtcgagaa cgagcagcaa
     2401 gtgtttgtcg cggaaatact ccttcaatac ctc
//
LOCUS       DATCGC010001811         3021 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_258017, whole genome shotgun sequence.
ACCESSION   DATCGC010001811 DATCGC010000000
VERSION     DATCGC010001811.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3021
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258017"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..930)
                     /locus_tag="VIJ87_17315"
     CDS             complement(<1..930)
                     /locus_tag="VIJ87_17315"
                     /inference="COORDINATES: protein motif:HMM:NF021942.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008239 - dipeptidyl-peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0070009 - serine-type aminopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S46 family peptidase"
                     /protein_id="HEY5446186.1"
                     /translation="MKSRKFLSALLLALFAIQTLHITALADEGMWTFNNVPRAEIKKK
                     YGFEITDAWLKKVQLASVRFNNGGSGSFVSPTGLVLTNYHIVEDIVNEVSTPEKDLAK
                     EGFVARTRADEIKAPSLELNVLMSIEDVTARVNGAVKAGTTDAEAFAARRAEIAAIEG
                     ESTKNTGLRSDVITLYQGGQYNLYRYKKYTDVRLVFVPEFQAAFFGGDPDNFNFPRFN
                     IDMALVRVYENDQPVHPENYFKWSTTGTKEGSLVFVTGNPGSTSRLDTVAHLQQLRDT
                     SIPIVLRLLERREAMLKQYMAKGEEETRRAQNEL"
     gene            complement(1153..2268)
                     /locus_tag="VIJ87_17320"
     CDS             complement(1153..2268)
                     /locus_tag="VIJ87_17320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446187.1"
                     /translation="MSPIAKRFVSTMSDVRLRFVALIAVLTLLWACYPVSEVSYSSPQ
                     QASVNQWMIELRTGEQKVQLTLRYSRQRSSGGFSDHTNGFGIEPEKLVGLTREQMMSS
                     GSHVQFQLQRDAGTFNFEGWFKEGNGSGHFTFSPSSSFASDLSRQGFGKATDEQLLSL
                     AMDDVGLALIDELKTGGYDLTTLEQLIRIGNHGVRLDYVQGLKAMGYTFKSVDFLVKM
                     KDHGVNLDFIRDLAGLGYTNLPAEELIRTKDHGVNATYINEFISAGYSRASLNDWITL
                     KDHGVNTQFVVALKELGYARVDLDDLRLMKDHGVNPTFIQELKEIGFANLAIDQLVRL
                     KDHGVNASYVRRMKERGYGDLSLDEYIRLKDRGTKDE"
     gene            2819..>3021
                     /locus_tag="VIJ87_17325"
     CDS             2819..>3021
                     /locus_tag="VIJ87_17325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446188.1"
                     /translation="MSTNWLRPPRLSNFARILFAEWRKLKLPVSNATLVVAVSGGADS
                     TAMLMALEKLTNSGKLSLPLVVA"
BASE COUNT          759 a          763 c          733 g          766 t
ORIGIN      
        1 caactcgttc tgagctcgac gcgtttcctc ttcgcccttg gccatgtact gcttgagcat
       61 cgcttcccgt cgttcgagca aacgcaagac gattggaatg ctcgtatcgc gaagttgctg
      121 gaggtgcgca acggtgtcga gacgtgacgt cgatcccgga ttgccagtca caaaaaccaa
      181 gctgccttct ttcgttccgg tggtcgacca cttgaagtag ttttcaggat gaactggctg
      241 gtcgttctca tagacacgga cgagggccat gtcgatattg aagcgcggga aattgaaatt
      301 gtcgggatcg ccaccaaaga acgcagcctg gaactcgggc acaaacacga ggcgaacatc
      361 cgtgtacttc ttgtagcgat aaaggttgta ttgaccgccc tgatagagag tgatgacgtc
      421 ggaacgcaac ccggtattct tcgtcgactc accttcgatc gccgcgatct cggcgcgacg
      481 tgcggcgaac gcctccgcat cggttgtccc ggctttgacc gcaccattca cccgtgctgt
      541 gacgtcctcg atactcatca acacattcaa ctcaagacta ggtgctttga tttcatcggc
      601 acgagttcga gcgacgaaac cttctttggc gagatccttc tcaggtgtgc tcacttcgtt
      661 cacgatatct tcgactatgt gatagttagt cagcaccaaa ccggttgggg agacaaagga
      721 gccggatcca ccattgttga atcttaccga ggcaagctgg accttcttca accacgcgtc
      781 ggtaatttca aaaccatatt tctttttgat ttcagcgcgc gggacgttgt tgaaagtcca
      841 catgccttcg tccgctaagg cggtgatatg aagagtttga atagcaaaaa gcgccagcag
      901 cagcgcagac aaaaattttc ttgatttcat ttctatcctc aaaattggat tgcgggagaa
      961 aggcttagag cacgacgctc ggtgaaaaga tgcctttacg gaagaaacgt aaacccgtgg
     1021 gacggggtta gtcaaacagg gattgcagat tgaagattta agattgcaca ctgagtgttc
     1081 ttagattcac cttagttagt ctgcgaacga tttggctgaa ggaaaatctt cactcttcaa
     1141 tctgcaataa cttcactcgt ctttagttcc ccgatctttc aagcggatgt actcatcgag
     1201 gctgagatct ccatagccac gttctttcat ccgtctaacg taactcgcgt taactccatg
     1261 gtcttttaga cggaccagtt ggtcaatcgc caaattcgca aaaccgattt ccttcagttc
     1321 ttgaatgaac gtcggattga ctccgtggtc tttcataaga cgaaggtcgt cgaggtcgac
     1381 tcgagcatac ccaagctcct ttagtgccac cacaaactga gtattaacac catgatcttt
     1441 cagtgtgatc cagtcattaa gcgacgcacg actgtagccc gctgaaatga actcgttaat
     1501 gtaggtggcg ttcactccgt gatcttttgt gcgaataagc tcctcagccg gaagattcgt
     1561 gtatccaagg ccggcgaggt cgcgaatgaa atctaaattc actccgtggt ctttcatctt
     1621 cacgaggaaa tcgacggact tgaaggtgta acccatagcc ttcagcccct ggacgtaatc
     1681 gaggcggaca ccatggtttc cgatgcggat caactgttcc agtgtcgtca ggtcgtagcc
     1741 gcccgttttc aattcatcga tcaacgccaa gccgacatca tccatggcga gagaaagcaa
     1801 ttgttcgtca gttgcttttc caaagccctg gcggctgaga tcggaggcaa aggaagaact
     1861 ggggctaaag gtgaaatgac ccgagccgtt cccttctttg aaccaaccct cgaaattgaa
     1921 ggttccagcg tcgcgctgca actgaaactg aacatgactg ccggacgaca tcatttgttc
     1981 acgggttagt ccgaccaact tctcaggttc gattccgaaa ccgttggtgt gatcactgaa
     2041 tccaccgctg ctccgttgcc gcgaataacg caatgttaac tggacctttt gctcacccgt
     2101 ccttagttca atcatccatt ggttgacgct cgcttgttgc ggacttgaat agctgacttc
     2161 tgaaaccggg taacacgccc agagcagtgt caaaaccgca attagggcaa caaatcgcaa
     2221 ccgaacatca gacatggtag aaacgaatct tttggcgatc ggtgacatag aggttctcct
     2281 aaggaacgat gcatttcttg gattgtagcg tttcccagtc tttcaggtaa tcaaggttgg
     2341 ttctaaaaac taaacaccgc agattgtagg tttgtgacgc aaaacggctg gtgaaaataa
     2401 acaaagccca accgctagcg gccaggctat gagaccgagc aaaaacgaaa ctggagttag
     2461 gactagtaag gagtttcttc tgttttgact gaagagttac tcagattgga atcggatttc
     2521 gtggtcacgc tgctgccaca ctgccggcaa atataagttt cagctgactg tgccgccgga
     2581 acgagccaga ggcacccaca cgattggcaa agaatcgttg atcctaaaag ccactcattg
     2641 aatttgatct gtttttcaac cctcatcgga agactccccc ttttgttcgt ttactccttc
     2701 gaattcgttt gaaggatcta aacgacaaac gcgacgaata tttcaataaa ctgtcgcggg
     2761 agtttgcgga cagccgtctg tgttgactcg aatcaaattg agttcgaaaa tcccaagtat
     2821 gtcgactaac tggctcagac cgcctcgatt aagtaacttt gcgagaattc ttttcgccga
     2881 atggcgcaaa ctcaagcttc ctgtctcgaa tgcgaccctg gtcgttgcag tttcgggcgg
     2941 tgcagactca accgcaatgc tgatggcgct ggagaagttg accaattcag gcaagctcag
     3001 cctgcctttg gttgtcgcac a
//
LOCUS       DATCGC010001812         1002 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_423652, whole genome shotgun sequence.
ACCESSION   DATCGC010001812 DATCGC010000000
VERSION     DATCGC010001812.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1002)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1002)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1002
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423652"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..265
                     /locus_tag="VIJ87_17330"
     CDS             <1..265
                     /locus_tag="VIJ87_17330"
                     /inference="COORDINATES: protein motif:HMM:NF017015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY5446189.1"
                     /translation="ALDKSSRGIISLLKLGCERGGKLPISKAYVWRNLPLDVAHVLTY
                     FVAHEGHHRGQIVMLARQVGCRLPVEVTGGLWHFAKRSKETGK"
     gene            416..>1002
                     /locus_tag="VIJ87_17335"
     CDS             416..>1002
                     /locus_tag="VIJ87_17335"
                     /inference="COORDINATES: protein motif:HMM:NF024206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEY5446190.1"
                     /translation="MKQLLTAIVDDNRASVKDLLNKDPQLATCHIDEAKLYDAQIFHW
                     IYVGDTALHLAAAGYRVEVVQLLLSAGADPNSIANHRRSSPLHYAADGYIIGPAWDPN
                     RQVKTIRCLLEAGSRINAQDKNGATPLHRAVRTRCAAAVEYLLAAGADPLRKNLPGST
                     PFHLAVQNTGRGGSGDEKARDAQRQIIETFLSRGV"
BASE COUNT          242 a          267 c          267 g          226 t
ORIGIN      
        1 agccttagat aaaagtagtc gcggcattat cagtttgttg aagctcggtt gcgaaagagg
       61 cggcaagctt cccatctcga aagcatatgt atggcgcaat ctccctcttg atgtggccca
      121 cgtcttaacc tatttcgtag cccatgaagg tcatcatcgc gggcagattg tgatgctcgc
      181 tcgtcaggtg ggttgtcgat tacccgttga ggttactggc ggtctctggc attttgcgaa
      241 acgatctaaa gagacgggta aataaaaaag ataggcgcgc cctatgattc ccaatgctcc
      301 ggactgaact ccggtgcagt agcccgactg ccaaggaggg ctctgggtac actctaattc
      361 cagtgagccc tccttgacgg tcgggctact gcaccgggtt cagtttctca gtcaaatgaa
      421 gcaacttctt accgcaatag ttgatgacaa ccgggcttcg gtaaaagatc ttctcaacaa
      481 agatccacaa ctcgccactt gtcacatcga tgaagccaag ctctacgacg cgcaaatctt
      541 tcactggatt tacgttgggg atactgcact gcatttggcg gctgccggtt accgggttga
      601 agttgtccaa ctacttctgt ctgcgggagc cgatccgaat tcgattgcca accaccgaag
      661 gagcagccca ctacactacg ctgctgacgg ttacatcatc ggacccgcat gggatccgaa
      721 tagacaagta aagacgatcc gatgtctgtt ggaagcgggc tcgcgcatca atgcgcagga
      781 caagaacggc gctactcctc tgcaccgtgc ggttagaacc cggtgcgctg cagccgtcga
      841 gtatttactg gcagcaggag cagatccact acgaaagaac ttgccaggct caacaccgtt
      901 tcatctcgcc gtgcagaaca ccggtcgcgg tgggtcgggt gatgaaaaag ccagggacgc
      961 acaacgacag atcatcgaaa cgtttctctc gcgtggcgtg ag
//
LOCUS       DATCGC010001813         1438 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_423670, whole genome shotgun sequence.
ACCESSION   DATCGC010001813 DATCGC010000000
VERSION     DATCGC010001813.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1438)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1438)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1438
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423670"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(292..792)
                     /locus_tag="VIJ87_17340"
     CDS             complement(292..792)
                     /locus_tag="VIJ87_17340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446191.1"
                     /translation="MAVFNWVQRLRVLAVRCLKSLLKALVVTLVIPLCLSAQDDENWP
                     SLSYLRNDYKAVSVVAHVRIQQAEITGRVGGYENWKVTAVVVESFKGKLKKGNSINYF
                     HGAEAGLKREYFNGEKIVFLLSERDPKTKEIRYSVLENSSLPFTPDRVSKLRLIRRQA
                     LKSRRS"
     gene            complement(792..>1438)
                     /locus_tag="VIJ87_17345"
     CDS             complement(792..>1438)
                     /locus_tag="VIJ87_17345"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5446192.1"
                     /translation="LQQCPNYAEVHHWAAVYFANIGAHERAAVEAKCAKELDPLSLLM
                     NMTPGLTAYLARDFDRAITELQKVIEMDPNFPAAHSVIAGVYVQQGMYKQAIAEYQKV
                     LDQSKGVTVVESAISALMAHAYAKWEKPGKARKLLEELLKACETSNTLPVSSHAIAEI
                     YVALGQTDAAFEWLNKALDQHDVQMVSIKVNPTLDLLRGDSRFQTLVEKVGIPT"
BASE COUNT          337 a          378 c          349 g          374 t
ORIGIN      
        1 cctcttgaat gaatcggcgc attcgttgat cattcgcgac cacagcctgg tgaaggattt
       61 ttacagcgac ggttcgattc aactcagtat ccaatgccag gtacacttcg cccatcccgc
      121 cctcggcaat cttcgagcgg atttcataac gtcctagttt tgtgccaggc gtgagcatta
      181 agctgaaatc gtgcggcggg attctatctg actgattgaa gtgaagctag attcgctgag
      241 tgccgtccga gacaacctag cgaccgttaa ttcaggagac ggaattcgca tttaggaacg
      301 acgagacttc agggcttgtc ttctgattaa tcttagcttg ctcacgcggt ctggagtgaa
      361 tggcaaagac gagttctcta acaccgaata gcgaatctcc ttcgtcttcg ggtcacgctc
      421 agagagaaga aacacaatct tctctccatt gaagtactcg cgttttaaac cggcctctgc
      481 tccgtgaaag taattgatgg agtttccttt cttgagcttt cccttgaacg actcgacgac
      541 aaccgcggtc accttccaat tctcgtatcc accaacacgt ccggtgatct cagcctgctg
      601 tatgcgaacg tgagcgacaa cggaaactgc tttgtaatcg ttcctcagat aactcagcga
      661 gggccagttt tcgtcgtcct gggccgacag gcacagcgga atgacgagag taacgacgag
      721 tgcttttaga agtgatttca ggcaacgcac ggctaacact ctaagccgtt gaacccaatt
      781 gaagacagcc atcacgttgg aatcccaacc ttctcgacaa gtgtctgaaa tcgcgaatcg
      841 ccgcggagga gatcgagagt ggggttcact ttaatgctta ccatctgtac atcatgttgg
      901 tcgagagcct tgttcagcca ttcgaaggcg gcatctgtct gtccaagtgc gacgtagatc
      961 tcagcgattg catgtgaaga caccggaagg gtatttgacg tctcgcaggc cttcaacaac
     1021 tcctcaagca gcttgcgcgc cttgcctggt ttttcccact ttgcgtaagc atgtgccatc
     1081 aatgctgaga tagcgctttc aaccaccgtc acccctttag attggtccag taccttttga
     1141 tactctgcaa tggcttgctt gtacatgccc tgctgaacgt atacaccggc gatgacgctg
     1201 tgtgcggccg gaaaattagg atccatctca attacttttt gcagttccgt aatagctcgg
     1261 tcgaaatctc gagcaagata tgccgtcaac ccgggtgtca tattcatgag tagtgacaaa
     1321 ggatcgagtt ctttcgcgca tttagcctcg actgccgccc gttcatgcgc acctatgttg
     1381 gcgaaataca ctgccgccca gtgatgaact tctgcatagt ttggacactg ctgcagtg
//
LOCUS       DATCGC010001814         1297 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_29051, whole genome shotgun sequence.
ACCESSION   DATCGC010001814 DATCGC010000000
VERSION     DATCGC010001814.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1297)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1297)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1297
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29051"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(63..>1297)
                     /locus_tag="VIJ87_17350"
     CDS             complement(63..>1297)
                     /locus_tag="VIJ87_17350"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HEY5446193.1"
                     /translation="MIRVAIIGGGIGGLTTAIALRQFGFEPEVYEQAPALLDVGAAIA
                     IWPNAMRVLERLGLAKKVLEHAGQMREIQWLDQTGRPINKVTIAETSELDFTPAVALH
                     RADLQEILLNSLPSASIHLGSSLIDCSQDDEKVVAHFANGHSSESEFLVGADGIHSRV
                     RTELLDESSPIYRGYTVWRGISSTIPGSIPPATAIELHGRGKRFGLGPVGLGRIGWWA
                     AANAANTSPKVEERSADRKVWKQGESVNTPRAHDTQGELLRLFERWYRPAIQLIESTS
                     PNSILKTGAFDRPSSKTWGNKRVTLLGDAIHPTTPNLGQGGCMAIEDALVLARCFEKY
                     REDAKGLRVYEQLRSDRTASIARYSRIYGTVGQWENVWARGLRRAALSLVPESVARRM
                     MQVVFDYNAAEVGMSDML"
BASE COUNT          288 a          367 c          333 g          309 t
ORIGIN      
        1 taccgcgtta tggtactgac tctatcctca ctacatcccg cgaacggaga gacaacgaca
       61 agctaaagca tatcggacat cccaacctcg gcagcgttgt agtcaaacac aacctgcatc
      121 attcttcgcg cgacgctttc cggaacaaga gaaagagctg cccgtctcag tcctctggcc
      181 caaacgtttt cccactgtcc aaccgtcccg tagattctag agtaacgagc tatcgaagcg
      241 gtgcgatccg atcgtaactg ttcataaacg cggagcccct ttgcgtcttc acggtatttc
      301 tcgaaacacc gggcgagcac cagcgcgtcc tcgatagcca tacatccgcc ttgacccagg
      361 tttggagttg tcggatggat cgcgtcaccc agtagtgtta cgcgtttgtt tccccacgtt
      421 ttgctcgatg gccgatcgaa agcacccgtt ttgagaattg agtttgggga cgtcgactcg
      481 atgagttgta tcgcaggtcg ataccaacgt tcgaacaatc gtagtaactc tccttgcgtg
      541 tcgtgggccc tgggtgtgtt aacgctttca ccctgcttcc aaactttacg gtcagcactt
      601 cgctcttcga cctttggact ggtgttcgca gcattagccg ccgcccacca gccgatgcgg
      661 ccaagtccta cgggaccaag gccgaatctt tttccgcgcc cgtgtaattc gattgcggtt
      721 gcaggtggta tcgagccagg tattgtcgag gagattcccc gccagactgt atagccgcga
      781 tagataggcg acgattcatc gagcagttcg gttcgaactc gtgagtgaat tccatcagcg
      841 ccaaccagaa actccgactc acttgagtgt ccgtttgcaa aatgagcgac aaccttttcg
      901 tcatcctggc tgcaatcgat cagcgaacta cccagatgaa tcgaagcgga aggaagtgaa
      961 ttcagcaaaa tctcctggag gtccgcgcga tggagcgcga ctgccggcgt gaagtctagc
     1021 tctgaagttt cagcgatagt gaccttgttg attggtcgac cggtttgatc aagccactgt
     1081 atttcccgca tctggccggc atgctcaaga actttcttgg cgaggccgag tcgctctaac
     1141 actcgcatgg cattgggcca gattgcgatg gcagcaccga cgtccagtag ggcgggagct
     1201 tgttcgtaga cctccggttc aaacccaaac tgtctgagtg caattgcagt ggtgagtcca
     1261 ccaatacctc cgccaatgat tgcgacgcga atcattc
//
LOCUS       DATCGC010001815         1195 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_258076, whole genome shotgun sequence.
ACCESSION   DATCGC010001815 DATCGC010000000
VERSION     DATCGC010001815.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1195
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258076"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..288
                     /locus_tag="VIJ87_17355"
     CDS             <1..288
                     /locus_tag="VIJ87_17355"
                     /inference="COORDINATES: protein motif:HMM:NF022135.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4198 domain-containing protein"
                     /protein_id="HEY5446194.1"
                     /translation="LEIVPGKNPATIKPGAEFPVRILKDGAPLANFPVSIVLGGDPDT
                     EFQATDSEGIATFKIKSAGKYLLRGTNLRPSTKPDLEWESDFTTLTIQVRK"
     gene            313..708
                     /locus_tag="VIJ87_17360"
     CDS             313..708
                     /locus_tag="VIJ87_17360"
                     /inference="COORDINATES: protein motif:HMM:NF013052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SET domain-containing protein-lysine
                     N-methyltransferase"
                     /protein_id="HEY5446195.1"
                     /translation="MTIADVEIRKSKIQGQGLYARRIFETGEVVLGWDCSHTLTSEQF
                     ARLTEEERRYTHPLDSERTMIVQPPERFVNHSCDNNTEVRDFCDVAIRRIEIGEEITS
                     DYGTDGSGVSFECLCGSVVCRQVIGPDVR"
BASE COUNT          331 a          274 c          311 g          279 t
ORIGIN      
        1 cttgagatcg ttcccggtaa gaatcccgcg accatcaaac cgggggcaga gtttccggtg
       61 agaatattga aagacggggc tcctcttgca aactttccag tgagtatcgt tctcggtgga
      121 gatcccgata cagaatttca agcgaccgat agtgaaggga ttgcgacgtt taaaataaag
      181 agcgccggaa agtatctgct tcgcgggaca aatctgcggc cttcaacaaa gcccgacctt
      241 gaatgggaaa gcgacttcac gacacttacc atccaggtgc gtaaatagat caactcaaaa
      301 gcgatcctga ctatgacgat tgccgacgtt gaaatccgta agtcgaagat tcaaggtcag
      361 ggactctatg ctcggcggat tttcgaaacc ggtgaagttg tccttggctg ggattgttcc
      421 cacacgctaa cgagtgaaca gttcgcgcga ctgacggagg aggaacgtcg ctacactcat
      481 ccactcgaca gtgagcgaac aatgatcgtt caaccaccag aacgtttcgt caatcatagt
      541 tgcgataaca acaccgaggt gcgcgatttc tgcgacgttg caattcgaag gattgagatc
      601 ggcgaagaga tcacgagcga ttacggaacg gacgggtcgg gtgtgagttt cgagtgcttg
      661 tgtgggagtg tcgtttgtcg acaagtgatt ggccccgatg tccgataagc tttagagcct
      721 cttgcaaaaa ctctcattct ccccaagctt cagcttgggg ttacagtagg gcgtaatttt
      781 gagaaaccgt tttaacggtt tacgagtttc gagccaatca actcaccgcc aaagttgcat
      841 tggcgttcgg attcattcgc atactggcaa accgttgaaa cggttcctga gtaatgagcg
      901 cgcaccataa ccccaagctg aagcttgggg agaatgagag cgttcgcact gtcgctactg
      961 atccgatgac aactcagttt ttgcaagtgc ctctttagct tgtcgttgtg tctcaaaaag
     1021 gggcttcgcc acgaattaac gagaaagaac taatcagaaa ggaactattc atgagtagtg
     1081 tagacaaagc catcgaaagt caactcaaga atattcagac gagaaccgga aaaactctcg
     1141 agcagttgta cgcacgtatc aaaaagagtg gtctcgctaa gcatggtgaa attcg
//
LOCUS       DATCGC010001816         2122 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_360792, whole genome shotgun sequence.
ACCESSION   DATCGC010001816 DATCGC010000000
VERSION     DATCGC010001816.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2122
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_360792"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            479..937
                     /locus_tag="VIJ87_17365"
     CDS             479..937
                     /locus_tag="VIJ87_17365"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: protein motif:HMM:NF012797.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0008175 - tRNA methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HEY5446196.1"
                     /translation="MIRIALVEPEIPPNTGNIARLCAATRVPLHIVGVPGFRMDDRAV
                     KRAGLDYWPEVILERHVTLEALSSSLPDARFVYFTKKADISYTNWSFGSDDCLVFGRE
                     TRGLPDDLLLQNWPNCLKIPMLNPRVRSLNLATAVAMVLGEALRQTGAFQ"
     gene            1041..>2122
                     /locus_tag="VIJ87_17370"
     CDS             1041..>2122
                     /locus_tag="VIJ87_17370"
                     /inference="COORDINATES: protein motif:HMM:NF012239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEY5446197.1"
                     /translation="MLQRKDIRNIAIIAHVDHGKTTLVDAMLRQSGTFRDNEQVRDRV
                     MDSMDLERERGITIMAKNTAVRYHDFKINIVDTPGHADFGGEVERVLKMVDGVMLLVD
                     AAEGCLPQTRFVLRKALEARLPAIAVVNKIDRSDARPAEVVDEIYELFLDLDATDEQI
                     EFPILYAISRDGLAKKNLDDESLTLEPLFEQIVATIPEPRELRSDSLQLLVANLDYND
                     YVGRLAIGRIFSGEIAIGDWIGVVKPDRSIQKTRVTQLYVFEGLKRESVQSAGCGEIV
                     ALAGIENINIGDTITSIENPQPLPVIAVDEPTIAMIFSVNNSPFAGREGKYVTSRQVR
                     ERLDKEILSNVAIRVENTDLPEQFKVS"
BASE COUNT          586 a          499 c          535 g          502 t
ORIGIN      
        1 atgtgtgttc aggcctccaa aatgttcgaa agagacgacg aaaatatttt tcgctagaag
       61 taataagtta ttgacttctg ttgcaattac gtttatatag caagatgttg tgcgccgttt
      121 actctagccc acaagagaaa gtaaaacaca ctatcttgtg gtcatgaaga aaacactaca
      181 acctaatctt gaaagaagga gcacatagaa gctatggcaa ctaaaaaagg tggaaagaaa
      241 gcagcagcga aaaagggtgg caccaagaag gccgcaaaga agggcggagc aaagaaggcc
      301 gccaagaaga gataactcga acaagcaggt ttcacagcaa gtcttccacg ggcgcacaaa
      361 aacatctgag gcccacgggg tcttacaaaa ggaacgacga gatcttcaag cgaagctcgt
      421 cgtttctttt ttttgatcgt gattgtctta gtgctgatca cgagatcgtc taacgcttat
      481 gattcgcatc gcactagtcg agcctgagat accgcctaac actggaaaca tagccaggct
      541 ttgcgccgct acccgagttc ctctacacat tgtaggcgtt ccaggatttc gaatggatga
      601 ccgcgcagta aaacgagcag ggctcgacta ttggcctgaa gtcattctcg aacgccacgt
      661 tactctcgaa gcgctttcct cctcactacc tgatgcaagg tttgtctact ttacgaagaa
      721 agcagacatc tcttatacga attggagttt cgggtctgat gactgcctgg tgtttggtcg
      781 agaaactcgc ggtctgccag atgatctctt gcttcaaaac tggccaaact gtctgaagat
      841 accaatgctc aatcctcgag tacgaagttt gaatctggcc accgcagttg ccatggtttt
      901 aggtgaggcg ctgcgccaga caggagcctt ccagtaagtc ttccagccaa gtttcacatc
      961 atgtccaccg gcagtcacgg tttctgcacc gagatgttaa gatacgcgtt tcttaattcg
     1021 acaaaactct ggactaagtg atgcttcaaa gaaaagacat tcgaaatatt gcaatcatcg
     1081 cgcacgtaga tcacgggaag accaccctcg ttgacgcgat gctcaggcag tcaggtacct
     1141 ttcgcgacaa tgaacaagta cgagatcggg taatggactc gatggatctt gaacgtgagc
     1201 gcgggataac gatcatggcg aagaatacag cggttcgtta tcacgatttt aaaatcaaca
     1261 tcgttgacac acccggtcac gcggacttcg gcggcgaagt ggagcgtgtc ctgaagatgg
     1321 ttgacggtgt gatgctgctg gttgatgcgg ccgagggttg tttgcctcaa acgcgtttcg
     1381 ttttgagaaa ggcacttgaa gctcgcttgc ccgcgattgc ggttgtgaac aagatcgacc
     1441 gcagtgacgc ccgaccggct gaagtagttg atgagatcta tgagttgttt cttgatctcg
     1501 acgcgacaga cgagcagatt gaatttccaa ttctttacgc catctcgcgt gacgggctcg
     1561 caaaaaagaa cctggatgac gagtcgctga cacttgaacc attatttgaa cagattgtcg
     1621 cgacgatacc agaacccagg gagctaagat cagattcgct ccaactcctg gttgccaacc
     1681 tcgactacaa cgactacgtc ggtcgcttgg caatcggtcg aatcttctcc ggtgagatag
     1741 caattggaga ttggatcgga gtggtgaaac cagatcgctc gatacaaaaa actcgcgtga
     1801 cgcagttgta cgtgtttgaa gggctcaaac gagagtcagt ccagagtgct ggttgcggtg
     1861 aaatcgttgc cctcgcaggc atcgagaaca tcaacatcgg cgacactata acttcaattg
     1921 aaaatccgca gcctttaccc gtcattgccg tcgacgaacc aacaatcgcc atgattttca
     1981 gcgttaacaa ttctcccttc gcgggtcggg aaggaaagta tgtgacttca cgacaggtga
     2041 gagagcgact cgacaaggag attcttagca acgtcgctat tcgagttgag aacactgatt
     2101 taccagaaca gtttaaggtc tc
//
LOCUS       DATCGC010001817         1120 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_423728, whole genome shotgun sequence.
ACCESSION   DATCGC010001817 DATCGC010000000
VERSION     DATCGC010001817.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1120)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1120)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1120
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423728"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            97..>1120
                     /locus_tag="VIJ87_17375"
     CDS             97..>1120
                     /locus_tag="VIJ87_17375"
                     /inference="COORDINATES: protein motif:HMM:NF014553.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446198.1"
                     /translation="MHELDQRERESLRQYFSREIFPTLTPLAFDPTHPFPHISNLSFN
                     LAVVVNDPDRGECFARVKLPDVFRRLVSVPGHDEAAPKNKELEGRQKRHRFVWLEEIV
                     ADNLDLLFPGLEIVASYPFRVTRDAEVTIKDDEAPDLITAVEEQLELQDFSSAVRLEL
                     DATTPQHIAEILTKNLQLPSYLVYTGDDPIGMAGVMELTSLDRPDLKDAPFQPSIPAF
                     LSKGGILNAIRHEDLLLYHPFDSFMPVVDFIREAANDPNVLAIKQTLYRVNPRSPIVD
                     ALMEARVNGKQVAVLVELKARFDEENNIEWARKLEDEGVHVIYGVRGLKTHTKVCLVI
                     RRDADGI"
BASE COUNT          259 a          327 c          284 g          250 t
ORIGIN      
        1 tgccgtgagc tgaccgtaca tcttgagcga cattacgcct gctggaagaa cgagctcttc
       61 ccgaggctgc gtgaggcggg cattcatgtc ctccacatgc atgaattaga tcagcgcgag
      121 cgggaaagcc tccgccaata cttttcacgg gaaatttttc cgacgctcac tccgctggcc
      181 ttcgacccga cccacccctt tccacatatc tccaatctca gtttcaatct cgcagtcgtc
      241 gtcaacgatc cggatcgcgg ggaatgcttc gcccgcgtca agttaccgga cgtgtttcga
      301 cgtctcgttt ccgttcccgg gcacgatgag gctgcgccga agaacaaaga attggaggga
      361 cgtcaaaagc gccacagatt cgtctggctg gaagagattg tcgcggataa tctggatctg
      421 ctgtttcccg gtctcgaaat cgtcgcctca tacccctttc gcgtcaccag ggacgctgaa
      481 gtgaccatta aagatgatga ggcccccgat ctgatcacgg cggttgagga gcagctcgaa
      541 ctacaagatt tcagctccgc cgtgcgattg gaactcgatg cgaccactcc acaacatatc
      601 gccgaaatcc tcaccaagaa ccttcagttg ccatcgtatc tggtttacac aggagatgat
      661 ccgatcggca tggctggagt catggaactg acctcgctcg accgtcccga cctgaaagat
      721 gctccttttc agccatccat tcctgcgttc ttaagcaagg ggggcatcct caacgccatt
      781 cgacacgaag acctcctgct ctatcatccc tttgacagtt tcatgccagt tgtagacttt
      841 atccgcgaag cggccaatga tcccaacgtc ctcgcgatca aacagacact ctaccgtgtc
      901 aatccacgat cgcccattgt tgacgcgttg atggaagccc gcgtcaacgg aaagcaggta
      961 gccgtccttg tcgaactgaa agcccgattt gatgaagaaa acaatatcga gtgggctcgg
     1021 aagctggaag acgaaggcgt gcacgtcatc tatggagtgc gcgggctcaa gacccatacg
     1081 aaggtctgtt tggtcatcag acgggatgcc gatggtatcc
//
LOCUS       DATCGC010001818         1861 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_423733, whole genome shotgun sequence.
ACCESSION   DATCGC010001818 DATCGC010000000
VERSION     DATCGC010001818.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1861)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1861)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1861
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423733"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..413)
                     /locus_tag="VIJ87_17380"
     CDS             complement(<1..413)
                     /locus_tag="VIJ87_17380"
                     /inference="COORDINATES: protein motif:HMM:NF014862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Clp protease N-terminal domain-containing
                     protein"
                     /protein_id="HEY5446199.1"
                     /translation="MVDLGSYKDKFGDSGQRILEHALNESRRRDQNFVSVEHILQALT
                     VEEPDMFNSAMRELSLDPIVVKMAIEKRLTSSRQQHVGKGFRIGSDTTDLFKRAMERA
                     RGQGRKTIEATDIFEALSNQESLFVDVLRTMGANP"
     gene            complement(720..>1861)
                     /gene="groEL"
                     /locus_tag="VIJ87_17385"
     CDS             complement(720..>1861)
                     /gene="groEL"
                     /locus_tag="VIJ87_17385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004211302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEY5446200.1"
                     /translation="AAMEQVGKDGVVTVEESKTLLTELDIVEGMQFDRGYQSPYFVTN
                     PDRMEAVLEDPLILLHEKKISAMRDLLPLLEQTVSAGRPILIISEEVDGDALATLVVN
                     RLRGTIKVCAVKAPAFGDRRKAILEDLAALTGGKVITEDLGIKLENVMVDDLGSAKRV
                     IIDKETTTIVEGGGERKAIQGRVANIRRQIEETTSEYDKEKLQERLAKLAGGVAVVRV
                     GAPTETAMKETKMRVEDALNATKAAAQEGIVVGGGVALVRAGKVLESFSDNNEDINTG
                     VKIVQRALQEPCRRIAENAGVEGAVIVGEVEQLKGNKGYNAVSGEFEDLALAGIMDPT
                     KVVRTALQNAASIAGLLLTTDAAITELPMPKKAAPPMPGGDDYDY"
BASE COUNT          423 a          535 c          401 g          502 t
ORIGIN      
        1 tctggattcg ctcccatcgt tcgcaataca tcaacaaaaa gactctcttg attacttagg
       61 gcttcaaaaa tgtcagtggc ttcaatagtt ttgcgacctt gaccccgagc acgctccata
      121 gcgcgtttga acaggtcagt agtatccgat ccgattcgaa aaccttttcc aacgtgttgt
      181 tgtcgactgc tggtcaatcg tttctcgatt gccatcttca ccacgatagg atccaacgaa
      241 agttcccgca tggcggagtt gaacatgtca ggctcttcaa cagtcaaagc ctgaaggata
      301 tgttcgaccg atacgaaatt ttgatcacga cgccgcgatt cgttcagcgc gtgttccaaa
      361 atgcgctgcc cgctatcgcc gaatttgtct ttgtatgaac ctaaatcaac catattttat
      421 ttacgaccgc cgcgcccctc ttggttcaca tttacgacgg taacactcac tttcaaacag
      481 ctaatccaac aaatccaacc gtacggttag atgtcgccag cataagcgtc gttgcgtttc
      541 aatgcaataa ctaataccgg caaaaaccga cagcaattct gcggccggaa cgcgaaaaac
      601 tgcggtattg cgtgattgcg aaacagtgga atttccgttt ggtactgacc gaatcactct
      661 ccaaacgttt cttcctctaa ctaattccgc aatttcgcat ttccgcagtc ccgcaattct
      721 tagtagtcgt agtcgtcgcc tcctggcatc ggcggggcgg ctttcttggg catgggcagc
      781 tcggtgatcg cggcgtcagt tgtcagtagc aatcctgcta ttgatgcggc attttgcaaa
      841 gccgttcgaa caactttcgt cggatccata atgcctgcaa gtgccaggtc ttcaaactct
      901 cccgagacgg cgttgtaacc tttattgccc ttcagctgtt ctacctcacc aacgatcacc
      961 gcaccttcca ctcctgcgtt ctctgcaatt cgacggcaag gttcctgaag cgcgcgttga
     1021 acgattttga ctccggtgtt gatatcctca ttgttatccg aaaaactttc gaggactttg
     1081 ccagcgcgaa cgagagcaac tccaccccca actacgatgc cttcctgcgc cgcagccttg
     1141 gttgcattta acgcatcttc gacgcgcatc ttcgtttcct tcatagctgt ttcagttggc
     1201 gccccgactc tgacgacagc gactccgccg gcaagtttgg ccaaacgctc ctgaagtttt
     1261 tctttatcgt attcagaagt cgtctcttca atttgacgcc ggatgttcgc cacacgtcct
     1321 tgaatcgcct ttcgttcgcc gccaccctcg acgatggtgg tggtttcctt gtcaatgatt
     1381 actcgctttg ccgaacccag atcatcaacc atcacatttt caagtttgat gccgagatct
     1441 tcagttatca ctttgcctcc cgtaagcgcg gcaaggtctt caaggatcgc tttgcgtcga
     1501 tcgccaaaag ctggcgcttt tacagcgcac accttgatcg ttccgcgcag tcgattgact
     1561 accaaagtcg ccaaagcatc gccgtcgacc tcttccgaga taatcaatat cggacgaccc
     1621 gcactaactg tctgctccag aagcggcaac aagtcacgca tggccgaaat ctttttttcg
     1681 tgcaagagaa tgagtggatc ttcaagaact gcttccatgc gatccgggtt ggtgacgaaa
     1741 tacggagact gatatccgcg gtcgaattgc atgccctcaa caatatcgag ttcagttaac
     1801 agcgtcttgg attcctctac tgtaaccacg ccgtcctttc caacttgctc catcgctgcc
     1861 g
//
LOCUS       DATCGC010001819         1071 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_423751, whole genome shotgun sequence.
ACCESSION   DATCGC010001819 DATCGC010000000
VERSION     DATCGC010001819.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1071)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1071)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1071
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423751"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..285
                     /locus_tag="VIJ87_17390"
     CDS             <1..285
                     /locus_tag="VIJ87_17390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446201.1"
                     /translation="ELTNLKMLFERDTGQLQVEATPTVPGAKPETEVAGPRAPVSEGD
                     ALKELRAVPIYFASSFALVKPYVDGFDGNVLDVPSLKKIRMNTNWVENKP"
     gene            282..902
                     /locus_tag="VIJ87_17395"
     CDS             282..902
                     /locus_tag="VIJ87_17395"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: protein motif:HMM:TIGR00057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HEY5446202.1"
                     /translation="MIIRPDNDETRELAARIVSNGGLIAFRTDTFYGLGADPLNDLAV
                     ARIKTLKGREDGKPILLLMAEAADVDPLIASRPEVFSLLVKHFWPGPLTIVVPASPDL
                     PEEITAGTSSVGLRLPDDDEVRKLVAACGGRLTATSANLSGSDAARSAADVERYFPAG
                     VDLIVDGGEVSATKPSTVIDVTVNPSRLIREGAISREELERVVLLS"
BASE COUNT          244 a          258 c          306 g          263 t
ORIGIN      
        1 gaactgacaa atctcaaaat gctttttgag cgcgatacgg ggcaactaca agttgaagcc
       61 actccaacag tccccggtgc caagccagaa acggaagttg ccggcccgcg ggcaccggtg
      121 tcggaaggcg atgccttgaa agagctccgc gctgtaccga tctatttcgc ttcctcgttt
      181 gcattggtaa agccatatgt cgacggcttc gacggtaatg ttctggatgt tccttcgctg
      241 aagaagattc gcatgaatac aaattgggtg gaaaacaaac cgtgatcatt cgccctgaca
      301 atgacgagac cagagaactt gccgccagga ttgtttccaa tggcggcttg attgcttttc
      361 gaacggatac tttttacgga ctcggggcgg acccgctaaa cgatttggcg gttgctcgaa
      421 ttaagacttt gaagggacgc gaagacggta agccgattct gttgttgatg gcggaagcgg
      481 ccgatgtgga tccgctaatt gcttcgcgcc cggaagtgtt tagtctcctc gtcaaacact
      541 tttggcctgg tccgttaacg atagtcgttc cggcgtcccc cgatttgcct gaagaaatta
      601 ccgccggaac gtcatcggtg ggattgcgtt taccggacga cgatgaagta cggaagttgg
      661 tagccgcatg tggtggtcgc ttaacggcca cgagtgcgaa tctttcaggc agtgatgcgg
      721 cacgatccgc ggcggacgtt gagaggtatt ttccggccgg agttgatttg attgtggatg
      781 gtggggaagt aagtgctacg aaaccgtcaa cggtgattga tgtaaccgta aacccgtcac
      841 gtttgattcg cgaaggagca atttcacgtg aggaactcga gcgggttgta ttgctgtctt
      901 gagatgattg cagatttgac ggacacaacg gcctggtcac ctgaagtcct ttgaattctg
      961 caaccatgtc tcggtggtac ctgaagttcg ctacagcgcg taaaagcccc tgcctacggc
     1021 gtcactgtca gatcctttac aaaaccccag tcgccacttg cgttgacgtg a
//
LOCUS       DATCGC010001820         1112 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_126413, whole genome shotgun sequence.
ACCESSION   DATCGC010001820 DATCGC010000000
VERSION     DATCGC010001820.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1112)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1112)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1112
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126413"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..255
                     /locus_tag="VIJ87_17400"
     CDS             <1..255
                     /locus_tag="VIJ87_17400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446203.1"
                     /translation="RASCRDEARYRAKRARDWVVKRGIDADRVVTKDSGFREDVTTVL
                     WIMPKGTNGLESESELTKSQVSIHKCVDKVFARVLCPNQK"
     gene            265..843
                     /locus_tag="VIJ87_17405"
     CDS             265..843
                     /locus_tag="VIJ87_17405"
                     /inference="COORDINATES: protein motif:HMM:NF016489.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HEY5446204.1"
                     /translation="MSLKESSDELNPPELVSEPLPVKNSRGSADYVALAIATVGVGFI
                     PLAPGTWGSLVGVGIYLLVRFLFLESGQIPFLIVQSVIILVVTLSGIWAASQTERITG
                     RKDPGKVVVDEVAGQLISLLPVALAPFWSSWKLWVIVSFILFRLFDIVKPYPARRMER
                     LHGGMGIMCDDLVAGVYAAGCVLAATLVMKAI"
     gene            854..1048
                     /locus_tag="VIJ87_17410"
     CDS             854..1048
                     /locus_tag="VIJ87_17410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446205.1"
                     /translation="MDNQGTRPDRELSEREAEATDKETLKDLQEAFGSSENTPEDQSD
                     VPSPDGSIDDEEELEQADLS"
BASE COUNT          266 a          259 c          301 g          286 t
ORIGIN      
        1 cgtgcgtctt gccgtgacga agcaagatac agggccaaac gagcacggga ctgggttgta
       61 aagcgtggga ttgatgcaga ccgcgtagtc accaaggata gcgggtttcg tgaggacgtt
      121 acgaccgtcc tttggatcat gccaaagggt acaaatggct tggagtcaga gtctgaatta
      181 acaaagagcc aggtgtccat ccacaagtgc gttgacaagg ttttcgcacg cgtcctctgt
      241 ccaaatcaaa agtaggaatt tcttttgtct ctcaaagaat ccagcgacga actcaatcca
      301 cctgaattag tctcggaacc attgcctgta aaaaacagtc gaggttctgc tgactatgtt
      361 gcattggcca tcgcaaccgt cggagtcggg ttcataccac tggcgcccgg aacatggggg
      421 tcacttgttg gcgttggtat ttacttgctc gttcgcttcc tttttctcga gtccggtcag
      481 attccattct tgattgttca gtcagtgata atactggtcg ttactctctc aggcatctgg
      541 gcagcctcgc aaacggaacg aattaccggt cgcaaggatc cgggcaaggt tgtggttgat
      601 gaagttgcgg gtcagcttat ctcgttgctg cctgttgcac tcgcgccgtt ttggtcgtca
      661 tggaaactct gggtcatcgt ttcgtttatt ctttttcgcc ttttcgacat tgttaagccc
      721 tatcctgcaa gacgcatgga acgattgcac ggcggaatgg gaattatgtg tgacgatctt
      781 gttgccggag tttatgcagc cggctgcgtc ttggcagcga ctttagtaat gaaagctatc
      841 taagggggaa ccgatggaca atcaaggaac aagaccagat agagaactca gtgagcggga
      901 agcagaggca actgataaag agacgctgaa agatctgcaa gaagcgtttg gcagttcgga
      961 gaatactccg gaagatcaga gcgacgtgcc gagtccggat ggatcaattg acgatgaaga
     1021 agaacttgag caggccgatc tttcgtgacg gcctagcttt ccttctcatc gatctcccgc
     1081 cttccgatcc aacccttcct cttgaagtaa ta
//
LOCUS       DATCGC010001821         1115 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_126428, whole genome shotgun sequence.
ACCESSION   DATCGC010001821 DATCGC010000000
VERSION     DATCGC010001821.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1115
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126428"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..355
                     /locus_tag="VIJ87_17415"
     CDS             <1..355
                     /locus_tag="VIJ87_17415"
                     /inference="COORDINATES: protein motif:HMM:NF028171.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carbamoyltransferase C-terminal
                     domain-containing protein"
                     /protein_id="HEY5446206.1"
                     /translation="DEEKQLWGIEKLNVKRSEIPAVTHVDYSARIQTVRRETNPLYWD
                     ILEAFRQRTGCPVLVNTSFNVRGEPIVCSPADSYRCFMRTEMDYLVLENFILDKKDQP
                     AFAEKGDWRQEFELD"
     gene            468..>1115
                     /locus_tag="VIJ87_17420"
     CDS             468..>1115
                     /locus_tag="VIJ87_17420"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY5446207.1"
                     /translation="MLSQTLPASNMKVSVIVPVRDEEESIRELLDGLMEQTRLPDEII
                     ITDGGSIDSTPQIIEEYISNGAPVRLIRAGEALPGRGRNLAAAEAHSEWLGFTDAGIR
                     PAKDWLEALVRRVEEDDTLDVVYGSWTPVTDTFFKECAAIAYVPPPTIRQGTVVRPRF
                     IASTLLRRHAWEAVKGFPENLRSGEDLIFMDRVESAGFRFVHEPAAHVQWDLRPTF"
BASE COUNT          264 a          270 c          318 g          263 t
ORIGIN      
        1 cgacgaagaa aagcagttgt ggggaatcga gaagctcaat gtgaagcgtt ccgaaattcc
       61 ggcggtcacg cacgtcgact attcagcccg gatccaaaca gtgcggaggg aaactaatcc
      121 tttgtactgg gacatactcg aagctttcag gcagcgaacg ggttgtccgg tgttggtgaa
      181 tacgagtttc aacgttcggg gtgagccgat agtttgcagt ccagccgata gctaccgatg
      241 ttttatgcga accgagatgg actacctggt tctggaaaac tttatcttgg ataagaagga
      301 ccagccagcg tttgctgaaa agggcgactg gcgccaagag ttcgagcttg attgatgtcc
      361 gatttgcttc agcttgtcgt gagttctacg gagcctgtaa ttcttcaata caacaggcta
      421 aagcatgtcg gacaatgcat tcgacaaacg atcgggaatt ctctaggatg ctgtcgcaaa
      481 cgttgccagc gagtaatatg aaagttagcg taatcgtccc agtccgtgac gaagaggaat
      541 cgattcgcga gctgctcgac ggcctgatgg aacaaacgcg cttgcctgac gaaatcatca
      601 ttaccgacgg cggttcgatc gactcaaccc cccagataat tgaagagtac atcagcaatg
      661 gtgcgcccgt gcgattgatt cgcgcgggtg aagcgttgcc tggacgaggc cggaatcttg
      721 ccgcggccga ggcgcattcg gaatggctgg gttttactga cgctggcatt cgccccgcca
      781 aagactggtt ggaagctctg gttcgcagag tcgaggaaga tgacacactc gacgtggtct
      841 atgggtcctg gacacccgtg acggatacgt ttttcaagga gtgcgctgcc atcgcgtatg
      901 tccctccgcc aactatccga caaggcaccg tcgtgagacc gcgatttatt gcctcgactc
      961 tattgcgccg ccatgcatgg gaggcggtaa aaggatttcc tgagaatcta cgttcaggtg
     1021 aggatctgat ttttatggat cgcgtcgaaa gtgccggttt tcgatttgtc catgaacctg
     1081 ccgcacatgt tcaatgggac cttagaccta cgttc
//
LOCUS       DATCGC010001822         1171 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_391116, whole genome shotgun sequence.
ACCESSION   DATCGC010001822 DATCGC010000000
VERSION     DATCGC010001822.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1171)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1171)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1171
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_391116"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            103..1053
                     /locus_tag="VIJ87_17425"
     CDS             103..1053
                     /locus_tag="VIJ87_17425"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEY5446208.1"
                     /translation="MSKQTEMKYREFGSTGIKVSAIGVGGWHLGLKHVDERLAVKIVR
                     SAIDRGMTFMDNCWDYNEGASETRMGKALSDGYRDKVFLMTKIDGRTKKEATRQLDES
                     LKRLKVDMIDLVQHHEILRFEDPHRIFDEEGAHGALIEAKQAGKLRFIGFTGHKDPRI
                     HLYMLEVAARNGFRFDAVQMPLSVMDAHYRSFEKEVLPELVKNKIAVLGKKCMANGIL
                     LKSQTVKPIECLHYALNLPTSVVITGIDSIEILDQAFEAVRTFSPMTPGDVETLLAKT
                     AAAASKGEFEPFKTTSLFDGTAENPDWLGEEPARIRALIQ"
BASE COUNT          317 a          256 c          320 g          278 t
ORIGIN      
        1 cttcgccctg gtgttgattg tgtgatctcc attctcgccg atctagcgga gcgagaacaa
       61 cggcgggcca ttatactggt gcatagtaaa tgggagtctc taatgtctaa acaaactgaa
      121 atgaaatatc gcgagttcgg aagcactggt atcaaagtct cggccatcgg tgtgggtggc
      181 tggcatctcg ggttgaaaca tgtggacgag cgattggcag tcaagatagt gcgcagtgcc
      241 atcgatcggg gcatgacgtt catggacaat tgttgggatt acaacgaagg cgcgagcgag
      301 acccgaatgg gaaaagcgtt gagtgacggt tatcgcgaca aagttttcct gatgacgaag
      361 atcgatggac ggacgaagaa ggaagccacg cgccaactcg acgaatcact caaacgtctc
      421 aaggttgaca tgattgacct cgtgcaacat cacgagatct tgcgtttcga agatccgcac
      481 cgaatcttcg acgaggaggg cgctcatggt gcgctaatcg aagcaaagca ggcaggcaaa
      541 cttcgcttca ttggcttcac tggtcacaaa gatccccgca tccatctcta catgcttgaa
      601 gttgctgcgc gcaatggatt cagattcgat gcggtacaaa tgccactcag cgtaatggac
      661 gcgcactacc gaagcttcga aaaagaagtg ttacccgagt tagttaaaaa caagattgcg
      721 gttctcggaa agaagtgtat ggcgaatgga attttgttga agtcgcaaac tgtgaaaccc
      781 atcgaatgtt tgcactacgc gttgaaccta ccgacgtcag ttgtcattac aggcatcgac
      841 agtattgaaa tactcgatca ggcatttgag gctgtcagaa cgttcagtcc gatgacgccg
      901 ggtgatgttg agactctgct ggcaaagact gctgctgcag catcgaaagg agaatttgaa
      961 cctttcaaga cgacgtcgtt gtttgatggt actgcagaga atccggactg gttgggagag
     1021 gaaccggcga ggattcgagc gctgattcag taagtcggat ctcagatcgc agatctcaaa
     1081 tctcagatca cctcaagttc aaaattgagc tgagcgttgc tttcgatttg agatctgaaa
     1141 tttgagattt gagatcagcg attctttaca c
//
LOCUS       DATCGC010001823         1170 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_391129, whole genome shotgun sequence.
ACCESSION   DATCGC010001823 DATCGC010000000
VERSION     DATCGC010001823.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1170)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1170
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_391129"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..453)
                     /locus_tag="VIJ87_17430"
     CDS             complement(<1..453)
                     /locus_tag="VIJ87_17430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446209.1"
                     /translation="MSHRANNHALINFLLLPFLFLTVALLGGLRVDAASRNFIFIAPP
                     LVTLVLALLLMLLLVRGGLVRLRHWVGSELPPLTNVAHIWLLITVFFASAQAFNSVLP
                     ERGLFHWMFSFFFLWTLWNNQFSSFDARRLLRSLAILFGTAFVLKHMLL"
     gene            complement(581..1093)
                     /locus_tag="VIJ87_17435"
     CDS             complement(581..1093)
                     /locus_tag="VIJ87_17435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446210.1"
                     /translation="MTARMQARIIQVAGFVLTISYAVFIVWLYATEPRSLKEVTTSAE
                     VAAGAYQVNQEKFNAALDLFRREQFRAARVEWQVADPAQVDARTQFYIAYSFYREGWG
                     RVYFDQQLFKQGLEAVNRAITLAASTSLTVDDSNLQMHTPAELKAELEQGTEQSWGDV
                     NPLKVLRTRK"
BASE COUNT          294 a          312 c          316 g          248 t
ORIGIN      
        1 caataacatg tgcttgagaa cgaaagcggt accgaacagg atcgcgagac tgcgcaagag
       61 ccggcgcgcg tcgaacgaag aaaactgatt gttccagagc gtccaaagaa aaaagaacga
      121 gaacatccaa tgaaacagac cgcgctccgg caacaccgag ttaaaggctt gcgccgacgc
      181 aaagaacact gtgatgagca gccagatgtg cgcaacgttt gtgagcggcg gaagttcgct
      241 tccaacccaa tgccgaagtc taaccagacc gccacggacc aggagcagca ttaacaagag
      301 cgcgagcaca agcgtgacga gtggcggcgc gatgaagatg aagttccgac tcgccgcatc
      361 gactcgcaga ccacccagca gtgcgactgt cagaaaaaga aaggggagga gcaggaagtt
      421 tattaaggcg tggttgtttg cgcgatgaga cattgcgatt tggatctttg gtttttggtc
      481 ttgggtcttt ggtcttgggt ctttgggagg ttggatttcg tctcagatcc gccgtttcaa
      541 catcaaaggc caaagaccaa aggccaaagg cctaaatccc tcatttcctc gtccgtagca
      601 ctttgagcgg attcacatca ccccagcttt gttcagtgcc ttgttcaagc tcggccttta
      661 actccgccgg cgtatgcatc tgcaagtttg aatcgtcaac tgtcagcgaa gtggatgctg
      721 ccagcgtgat tgctcgatta actgcctcca aaccttgttt gaacaactgc tggtcaaaat
      781 aaacgcggcc ccaaccctcg cgataaaatg aataggctat gtagaactgc gtgcgagcat
      841 cgacctgtgc cggatccgca acctgccatt caacgcgcgc cgcacgaaac tgttcacgcc
      901 ggaagaggtc gagagcagcg ttgaacttct cctggttgac ctggtaagca ccagcggcaa
      961 cctcagcgct agttgtcact tctttgagac tgcgcggttc agtcgcatag agccagacga
     1021 tgaagacagc atacgaaatc gtcaacacga aacccgcaac ttgaataatt ctggcttgca
     1081 ttctggccgt catgatagca cctcatcttg gcggctctgc cgcgttcctt ggcggctctg
     1141 ccgcggtctg tggggttcta ccgggttccg
//
LOCUS       DATCGC010001824         2606 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_225448, whole genome shotgun sequence.
ACCESSION   DATCGC010001824 DATCGC010000000
VERSION     DATCGC010001824.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2606
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_225448"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..990)
                     /locus_tag="VIJ87_17440"
     CDS             complement(<1..990)
                     /locus_tag="VIJ87_17440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446211.1"
                     /translation="MKRYQVSSLAILLSLLVTSDSLSSSRSSQSANKDLYSPEIVLVK
                     PAKGGFTTNLNTIVLEGLVLSYKLPLIEITFSQNKTVLFRKKPEAGAARRFPFSVPVK
                     LQPGANQITIEARNDKGASRLALESIFYDSGSGSNSAKPNLIVLALGISSYHDPSLKL
                     GTAEFDVDEFAKRMSAGGACLFQTPKVKVIKGTETTRRAVLAGLSWLSTEAQSDADVK
                     VIFIRGWTTRDSAGNAFLLTSDHGSDSELEINDVSFELIWRRLKSTRGRSVLLVDTNI
                     SGIGAGFSATPWTEVLQPVSNVSAVIQTSRPATGESTNHSIFTVALLEALSPKA"
     gene            complement(1001..1918)
                     /locus_tag="VIJ87_17445"
     CDS             complement(1001..1918)
                     /locus_tag="VIJ87_17445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446212.1"
                     /translation="MTELWEDLKSKVHGLLGSWASISALGSFVLYLFGYLALRFHLTT
                     LGVGTDLAVLDERYLFTGAKFFIYLVCTIPILILIGLVLASPVILIAWLVRVVARRKN
                     NNDVENQRPAESNRFVAFFREPRVLALLSLVISVVIVQFVMRQCYFFGNLLLASELPN
                     TSLHLHKLLFDEEGGIRSLYFSGLVFGTLLTASLLYAAINSKATPAPKALRILAGLLV
                     AIQFLLLPVNYGVFILEKQVPRVIDLGDQVPLAAGQEAWLVWEGNEGRTYLVRTNQTD
                     RRLVTVPKKDFKKIEITKYDEIIKYLFDH"
     gene            2232..>2606
                     /locus_tag="VIJ87_17450"
     CDS             2232..>2606
                     /locus_tag="VIJ87_17450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446213.1"
                     /translation="MAESIRTIPSGLDVMGHPFAKPTARQWRLHILLFLFTVVTTVLS
                     GVMLVIPELGTTDPPLNRPIDYLLYVPTAYVTSVIDFFTYVFHHPALFLQGASFSASL
                     LAILFSHEMGHYLACRHYRVDAT"
BASE COUNT          660 a          653 c          633 g          660 t
ORIGIN      
        1 ggccttaggg ctcaacgctt caagtaaggc caccgtgaaa atactatggt ttgtagactc
       61 tccagttgcc ggtctggaag tttggattac tgcacttacg tttgaaaccg gctgcagaac
      121 ttcagtccag ggcgttgcag aaaagcctgc accgataccc gagatgtttg tatctaccag
      181 caacacagat ctcccccggg tcgatttcaa acgacgccaa attaattcaa acgagacgtc
      241 attgatttcg agttctgaat ctgaaccatg atcgctggtt agtaaaaaag cattgccggc
      301 gctgtctcgc gtagtccaac cgcgaatgaa aattactttt acgtcggcgt ctgactgcgc
      361 ttccgtgctt agccatgaca acccggcaag cacagcgcgt cgagttgtct cggttccctt
      421 tattaccttt accttcggcg tttgaaaaag acaggcacca ccagctgaca ttctttttgc
      481 aaactcatca acatcaaact cggcggtgcc tagcttgagc gacgggtcat ggtaagaaga
      541 gataccaaga gcgagaacaa taaggtttgg ctttgcagag ttagaacctg accctgaatc
      601 ataaaagatc gattccaagg ctaacctcga cgctccttta tcattccggg cctcgatggt
      661 gatttggttg gcccctggtt ggagctttac ggggacgcta aaaggaaatc gccgagcggc
      721 acccgcttcc ggtttcttcc taaaaagtac ggtcttgttt tgagagaaag tgatttcgat
      781 aagcgggagt ttgtaactta ataccaagcc ttcaaggacg atcgtgttca ggttggttgt
      841 gaatccacct ttagccggct tcaccaaaac gatctccggc gagtaaagat ccttgtttgc
      901 actttgtgaa gatcggcttg aactcagact gtcgcttgta acgagcaggc taagcagaat
      961 cgcaaggctt gagacctggt accgcttcat atcgtttatc tcagtgatcg aacaagtact
     1021 tgatgatttc gtcgtacttg gttatctcga ttttcttgaa gtctttcttc gggacggtca
     1081 ctagtcgtcg atcggtttga ttggttctca cgagataagt tctgccttcg ttaccttccc
     1141 aaacaagcca cgcctcctga cccgcagcca acggcacttg gtcacccagg tctattacac
     1201 gcgggacttg cttttcgaga atgaacacac cgtagttaac cggcaacagc agaaactgaa
     1261 tagctacgag cagtcccgca agaatgcgga gggcctttgg agctggtgtt gcttttgaat
     1321 tgatagccgc gtaaagcagc gacgcggtta gcagcgtccc aaaaactaaa ccggagaagt
     1381 acagtgatcg gattccgcct tcttcatcaa agagaagttt atgtagatgt agtgaggtgt
     1441 tgggaagctc cgacgccaac aacagatttc cgaagaaata gcactggcgc atcacaaact
     1501 gaacgatcac caccgagatg acaagcgaca gcaaagccaa cacgcggggt tctctgaaga
     1561 aagcaacgaa tcgattgctt tccgctggac gctgattctc aacgtcgttg ttgttcttac
     1621 ggcgcgcaac gactcgaact aaccatgcaa tgaggataac gggagaggcc aggaccaaac
     1681 ctattagaat caggattgga atggtgcaaa ccaagtagat aaaaaacttc gcacccgtga
     1741 aaaggtagcg ttcatcgagc acagcaagat cggttcctac acccagtgtc gttaggtgaa
     1801 acctgagcgc caggtaacca aagaggtaaa gcacgaagct gccaagcgcg cttatcgatg
     1861 cccagctgcc cagcagccca tggactttcg acttcaaatc ttcccagagc tctgtcatgg
     1921 ttttttgagt gagttagttt agttctgaat tgacttaaga cgtcatgttt gaagccgagc
     1981 tagtgaaccg tgtctcggtt gaagaagagc cttccagcta tcgagtaggc ccccagtttg
     2041 gtctggacgg gtttaggaga tcgaagtcga cagacccacc tcggatgcta agttttatcg
     2101 actccgcgag gtgagccgaa aatacgccaa agtctgaggg ccgtcaatat tttgtctagt
     2161 aggaattgaa atcgtttctt gttaacttat gaaaacgatc agatttgagg ggaaacatct
     2221 taagctcaag catggctgaa tcaattagaa ccatcccgtc cggcctcgat gtcatgggcc
     2281 acccatttgc gaagccgacc gctcgacagt ggcgacttca cattcttctt ttccttttca
     2341 ccgttgtcac gaccgtcctg tcgggtgtaa tgctcgtcat acctgaactg ggaacaaccg
     2401 atcctcctct caacagacca attgattacc tgctgtatgt gccgacggct tacgtaactt
     2461 cggtgatcga tttcttcact tacgttttcc accatcccgc gctgttcctt cagggcgcta
     2521 gtttctccgc atcactgttg gctatcttgt tctctcacga gatgggtcac tacttggcgt
     2581 gcagacacta tcgcgtggat gccacg
//
LOCUS       DATCGC010001825         1187 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_29206, whole genome shotgun sequence.
ACCESSION   DATCGC010001825 DATCGC010000000
VERSION     DATCGC010001825.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1187
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29206"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..186
                     /locus_tag="VIJ87_17455"
     CDS             <1..186
                     /locus_tag="VIJ87_17455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446214.1"
                     /translation="VVSDAGVNRIYVIKNGHAEQRLVQLGQTEGDLVQVKTGVAADEK
                     VATSNLEQLGDGVPVKG"
     gene            283..>1187
                     /locus_tag="VIJ87_17460"
     CDS             283..>1187
                     /locus_tag="VIJ87_17460"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY5446215.1"
                     /translation="MQKLAEICVRRPVFATMLILSLTVVGLFSYKSLGVDLFPKIDLP
                     TITVTVVNRGASPQEIETEITDKIEGAVNTVAGIDELRSTSVEGVSQVFITFLLEKNP
                     DIAAQEVRNKIDLILSDLPVTAEQPIVQKLDTDAAPVVRIAVSAPRSLREVTDIADKK
                     IKQQIESISGVGDVQIIGGRTREIEIWVDPDKLRAFNVTVAQVADAVKAQNLELPGGR
                     VDEGARELTVRTMGRIVEPSQFNNLVVANRGTYSVKLSDVGYAEDGAEEPRTEARLNG
                     LPAVTLVVSKQSGQNTVAIADAVKER"
BASE COUNT          312 a          296 c          334 g          245 t
ORIGIN      
        1 gtcgtcagcg acgccggggt taaccggatt tatgtaatca agaatggtca cgcagaacag
       61 cgactcgttc agttgggcca aaccgaaggt gatcttgtcc aggtgaagac tggcgttgcg
      121 gctgatgaaa aagttgcgac gagcaatttg gaacagttgg gtgatggagt tccggtgaag
      181 ggctaatgaa tttcagatct cagattgaaa gctcgcgtta ggtgcccagt tacaaagaac
      241 caagcaccaa gcccaaagca ctaagcacaa agtacaaaca ccatgcaaaa gctagcagag
      301 atatgtgtcc gccgtccggt ttttgcgacc atgctcatct tgagcctgac tgtcgtagga
      361 ttgttctcct acaagtcgct gggcgttgac ctctttccga agatagatct acccacgatc
      421 acagtcaccg tcgttaaccg tggtgcgtct ccccaggaaa tcgaaaccga aattaccgac
      481 aaaatcgaag gcgccgttaa cacagtcgcc ggtattgacg aactgcgctc gacgtcagtt
      541 gaaggagttt cgcaagtctt tatcacgttc ctcctcgaga agaatcccga catcgcagcc
      601 caggaagtca gaaacaagat cgatttgatc ctgagtgatc tgccggttac cgccgagcag
      661 ccgattgtgc aaaagctcga tacggacgct gctccggttg tgcgtatcgc ggtttccgca
      721 ccgcgctcgc ttcgcgaagt gaccgacatt gccgacaaga agatcaagca acagattgaa
      781 tcgatcagtg gcgtcggcga cgtgcaaatc attggtggca gaaccaggga gattgaaatc
      841 tgggtcgatc cagacaagct acgggctttc aacgtcacag tggcccaggt ggcagacgcc
      901 gtaaaagcgc agaacctgga attgcctggt ggtcgtgtgg acgaaggcgc tcgagaactc
      961 acggtgcgca cgatgggacg catcgtcgag ccgtcacagt tcaataattt ggttgttgcc
     1021 aaccgaggga cttattcagt caaactcagc gatgtcggtt atgccgaaga cggagcggaa
     1081 gagccgagga ccgaagcacg tttgaatgga ttgccggcag tcacgttggt ggtatcgaag
     1141 caatcaggac aaaacaccgt cgcaatcgca gatgccgtca aggagcg
//
LOCUS       DATCGC010001826         1423 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_29217, whole genome shotgun sequence.
ACCESSION   DATCGC010001826 DATCGC010000000
VERSION     DATCGC010001826.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1423)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1423)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1423
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29217"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1181)
                     /locus_tag="VIJ87_17465"
     rRNA            complement(<1..1181)
                     /locus_tag="VIJ87_17465"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          291 a          403 c          296 g          433 t
ORIGIN      
        1 cattttcggc gcgacatcgc tcgatgagtc agctattacg cactgtttaa atgatggctg
       61 cctctaagcc aacatcctca ctgtctgtgc aacgtcacat cctttccact taactgtatt
      121 taggcgcctt aactgttggt ctgggctgtt gccctcttga cgacgaagct tatccctcgc
      181 cgtctgactg ctggaataat gggatccgag gaattcggag tttgattggt tttgatatcc
      241 tggtggggac tctaagccat ccagtgctct acctcgctcg gagtacttaa tccaacgcta
      301 gccctcaaac tatttcggag agaaccagct atcacggggt ttgattagtc tttcgctcct
      361 actcacaagt catctcagga tttttcaaca tccacgagtt cggtcctcca ctgcatgtta
      421 ctgcagcttc aacctgctca taagtagatc acctccgctt cgggtctatt gccagcaact
      481 atgttcgcac tattcgtact cggtttccct tcgcctccat tcaacaaact gaacttaggc
      541 ttgccactga caataactcg cagactcatt atgcaaaagg caagcggtca ccacttacgt
      601 ggctcccaca cattgtatgc aaacggtttc aggttctatt tcactcccct agcaggggtt
      661 cttttcacct ttccctcgcg gtacttgttc actatcggtt gccaacgagt atttagcctt
      721 atccagtggt ctggacagat tcatgcagag tttcacgtgc accgcattac ttgggatacc
      781 tctaggggac ttccagcttc gctcacccgg ctgtcacggt ctgtggccac tttttccata
      841 gtgttaagct cgctttccat ctcccatatc aaggtcccgc aaccccgccc ggataaatcc
      901 ggatggttta ggctgttccg ctttcgctcg ccactactaa cggaatcact tcgttttctt
      961 ttcctggggt tactgagatg tttcacttcg ccccgtttcg cttcgccgga ctatgaattc
     1021 atccagtcga taccgggagg ttaatcccgg tgggttgtcc cattcggaaa tccacggatc
     1081 agcgcctgct tgcggcttcc cgtggcttat cgcagcttgc tgcgtccttc atcgcctgtt
     1141 ggcaccaagg cattcaccgt attgcactta gtagcttgat cacaaaagta aacttagttc
     1201 atacattcca tcttgcgatg ttctgtactc attaagaaaa ctcagcgaat tgtattaatt
     1261 acgccctttt ctatttcttt tccctatgtg tagttgtcaa agaacacgcg ctctccctac
     1321 tcccatccaa ggtttttagc cctgacgatg ctttcgagga agcatgtaaa ttcgtgttgt
     1381 ccggcaagtg agtttaatcc tttttcggtc gcctccttcg ggc
//
LOCUS       DATCGC010001827         2079 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_258222, whole genome shotgun sequence.
ACCESSION   DATCGC010001827 DATCGC010000000
VERSION     DATCGC010001827.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2079)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2079)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2079
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258222"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2079
                     /gene="mfd"
                     /locus_tag="VIJ87_17470"
     CDS             <1..>2079
                     /gene="mfd"
                     /locus_tag="VIJ87_17470"
                     /inference="COORDINATES: protein motif:HMM:TIGR00580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003690 - double-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HEY5446216.1"
                     /translation="TVGRLSGGFALPQSRLIVHVETDIFDEAADGYERQVAGAEARRQ
                     KEGKRKRSKTAAFLSDFRDLRPNDFVVHIDHGIAKFGGLQTLDLGSRTGEFMLLFYAD
                     DAKLYVPVERLDLVQRYSIAEGHQPQLDRLGGLGWLKTKAKAKRAMRDMADELLRLYA
                     ERKLVGGYSFAGDTPWQQEFEDGFPYMLTPDQETAIEDVKKDMEEPVPMDRLLCGDVG
                     YGKTEVAMRAAFKSVMEGKQAAVLTPTTVLAYQHYDTFRTRFAPFPVKVELLSRFRSA
                     KEQKEVVKRVEAGEVDVIIGTHRMLSKDVHFKDLGLVVVDEEQRFGVAHKERLKQLKK
                     RVDVLTLSATPIPRTLNMSLSGMRDMSLIETPPRDRLAIQTQVVQFSETVIKAAIDLE
                     LSRGGQVFFIHNRVETIETIAALVQRLVPQARLAIGHGQMNEKEMERVMLDFIAYKYD
                     VLVATTIIENGIDIPRANTIIINRADHYGLSQLYQLRGRVGRSSRRAYAYLLIPGEAE
                     LSPIARRRLAAIREFSDLGAGFRIAALDLELRGAGNVLGGQQSGHMDALGFDLYTQML
                     ERTVAELRGEEVEDETSVTLNLGVEVAIPDDYISDMGQRLRTYKRVSSARDDATLTSI
                     REETADRYGRVPVSVERLFDYARLRRLAEEVGILSIDKTPDGAALKFSEKARVSPEKL
                     ADFIGKHEGTA"
BASE COUNT          495 a          518 c          594 g          472 t
ORIGIN      
        1 cacggtgggt cgtttgagcg gtgggtttgc actgccacag tcgcgcctga tagtgcacgt
       61 tgagaccgac atctttgatg aagcggccga tggatacgaa aggcaggtag caggagcaga
      121 agccaggcgg cagaaagagg ggaagaggaa gaggtcgaaa acagcggcgt ttctttccga
      181 ctttagagac ctgcggccga acgattttgt cgttcatatc gatcacggca tcgccaaatt
      241 tggtgggttg caaacccttg acctgggttc gcgcactggc gagttcatgc tgctcttcta
      301 cgctgatgac gcaaagctct acgtgcctgt cgagcgactc gatctcgtcc agcgttattc
      361 catcgccgaa ggacatcaac cacagctcga tcgtcttggt gggctcggtt ggctaaaaac
      421 taaagctaag gccaagcgcg ctatgcgcga tatggccgat gagttgttgc gcctttacgc
      481 tgaacgcaaa cttgttggtg gctactcgtt tgcaggagac acgccctggc aacaggaatt
      541 cgaggacgga ttcccgtata tgctgactcc cgatcaggaa acagcaatcg aagacgttaa
      601 gaaagacatg gaagagccgg tgccaatgga tcgcttgctg tgtggcgacg ttggctacgg
      661 gaagacagaa gttgcaatgc gtgcggcttt caaatccgtg atggaaggca aacaagctgc
      721 ggtacttact ccaaccacgg ttctcgcgta tcaacactac gacaccttcc gaactcgatt
      781 cgcaccgttt cctgtaaagg tggaattgtt atcccgcttc cgatctgcga aagaacagaa
      841 ggaagtcgtc aagcgagtgg aggcggggga agttgatgtg atcatcggta cccaccggat
      901 gctttcgaaa gatgttcact tcaaggatct cggtctcgtg gttgttgacg aagaacagcg
      961 tttcggtgtt gctcacaaag aacgactcaa acaactcaag aagcgagtcg atgttttgac
     1021 actgtcagcg acgccgattc cccgcacact caacatgtca ctcagtggca tgcgtgacat
     1081 gtctttaata gagactccgc cgcgagatcg tctggcgatc caaacccagg tggttcagtt
     1141 ctctgaaacg gtgatcaagg cggcaattga tctggaattg tcacgcggcg ggcaagtttt
     1201 ctttattcac aatcgcgttg aaactattga gacgattgcc gcactcgttc aacgacttgt
     1261 tccgcaggcc aggctcgcaa ttggtcatgg acagatgaac gagaaagaga tggaacgagt
     1321 aatgctcgat ttcattgcct acaagtatga cgttctcgtt gcgaccacga tcatagaaaa
     1381 cgggatagac atcccgcgcg ccaacacgat catcataaac cgcgccgatc attatggtct
     1441 ttctcagctt tatcagttgc gcggacgtgt ggggcgttcc agcaggcgtg cctatgctta
     1501 cctgctaata ccgggcgaag cggaactttc gccgatcgcc cggcgtcgcc tggctgccat
     1561 tcgtgagttt tcagatttag gtgctggttt ccgcatcgca gctttggatc tcgagctgcg
     1621 gggcgccggg aatgtcctgg gtggccagca gtcaggtcat atggatgccc tgggtttcga
     1681 cctctacact cagatgcttg agcgaactgt cgcagagtta cgtggcgaag aggtggaaga
     1741 cgaaacgagc gtcacgctca atcttggcgt cgaagtggca attccggacg attatatttc
     1801 cgatatgggg caacgtttgc gcacttacaa gcgagtgtcg tccgcccgtg acgacgcgac
     1861 gttgaccagc atccgcgagg aaacagccga ccggtatggc cgagtgccgg tctcagttga
     1921 gcgccttttt gactacgcaa ggttgcgacg gctggctgag gaggtcggga ttctttcaat
     1981 agacaaaacg cccgatggtg cagccctaaa gtttagtgaa aaagctcgcg tttcacccga
     2041 aaaacttgcc gatttcatag gaaaacatga aggaacggc
//
LOCUS       DATCGC010001828         1183 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_423845, whole genome shotgun sequence.
ACCESSION   DATCGC010001828 DATCGC010000000
VERSION     DATCGC010001828.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1183)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1183)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1183
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423845"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            423..959
                     /locus_tag="VIJ87_17475"
     CDS             423..959
                     /locus_tag="VIJ87_17475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446217.1"
                     /translation="MRTTLERPDAITASAVSAREQISQAFADRIRELDSGKELEHVAE
                     DVLPQLEKFLESPAEKRLRRVRGGVITATVGLGLSIIAIIIAADKPDFIPFVTPGLIT
                     FLVGLGLIINGLLFTVPRKELPGASEDALSQKLLDATTQYQGPQLKAMTNELSPSDRT
                     PVLSVTEHTTHHLQSKKS"
     gene            970..>1183
                     /locus_tag="VIJ87_17480"
     CDS             970..>1183
                     /locus_tag="VIJ87_17480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446218.1"
                     /translation="MTIELEGGCRVSTMNEGHPMTNGSMKIWNQIGPSTGAKAISLRV
                     LEIGRGVSPLIRNRATDEVFYCVEKIE"
BASE COUNT          293 a          312 c          301 g          277 t
ORIGIN      
        1 caaggatcac attgcgtttt ggagaggcgt gaagatcgag gcatgaaaac caagatcatt
       61 ggtcatctgt catttcgcat ttttcagttg tcatctgctt gtggtcattt ggtcacgcgg
      121 gcggcttggc cgatgtagtc agtaccacaa cgcggtagcg tgtggctgag gacgcttaag
      181 actcgtaacg atctagccac acgctaccgc gtcgtggtac tgactacatc gctaccggag
      241 ttcttcttca aatgaccaac tgataaatct caaatgacca atgaccaatg atccgaccaa
      301 ctcccgcgga acttcccagc taaccggccg tataatcctc tgctatgtat tgcccatcct
      361 gcggatctga agaacgccaa ctcagtcagt tttgtcgcgc atgtggtact gacctcagac
      421 ttgtgcgcac aactcttgag cgccctgatg ccatcaccgc ctctgccgtt tccgcacgtg
      481 aacaaatcag ccaggccttc gctgacagaa ttagagaatt ggactctgga aaagaactcg
      541 agcacgttgc tgaagatgtg ttgccacagc ttgagaagtt cttggaatca cctgcggaaa
      601 agcgcctgcg cagagtcaga ggtggcgtga tcacggccac agtgggtttg ggactctcga
      661 ttatcgcgat aatcatcgcg gccgataagc ctgactttat cccgttcgta acgccgggac
      721 taatcacttt tctggtggga cttgggttga taattaacgg acttctcttc acggtcccgc
      781 gcaaagaact gccgggtgcc tctgaagatg cgctctcaca aaaactcctc gatgcgacta
      841 cgcaatacca gggtccccaa ctaaaggcga tgactaacga gttgagtcca tccgaccgga
      901 cgcctgttct ttccgtcacc gagcacacaa ctcatcacct ccaatcaaag aaatcctagg
      961 aggtccacaa tgacgattga attagaaggt ggttgccgcg tctcaacgat gaatgaaggc
     1021 catcccatga cgaatggctc gatgaagatc tggaatcaga tcggcccatc aaccggggcc
     1081 aaagcaattt cactgcgggt ccttgagatt gggcggggtg tgtcgccgtt gattcggaat
     1141 cgagcaacgg acgaagtctt ttattgcgtc gagaaaatag agg
//
LOCUS       DATCGC010001829         1054 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_292860, whole genome shotgun sequence.
ACCESSION   DATCGC010001829 DATCGC010000000
VERSION     DATCGC010001829.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1054)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1054
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_292860"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..617
                     /locus_tag="VIJ87_17485"
     CDS             <1..617
                     /locus_tag="VIJ87_17485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446219.1"
                     /translation="ANAQGLTKEELDAQIQQNLNTPIACGCSVQDERDLDSRINSLYA
                     ILQEFQTQKQPYGGSKQTLTPAIRNTISQAVNQRINAVKDPKATVAGATTYDFGCFTL
                     IDSAATPCLRGAIDDHESVHRAACDAHSSADWRYSQTVEDWIQEELVAYDKELKRLLE
                     ERNKRLPFCKLDPSVKKALQDIANDKEREQEAQQIADWFLGLFN"
     gene            652..>1054
                     /locus_tag="VIJ87_17490"
     CDS             652..>1054
                     /locus_tag="VIJ87_17490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446220.1"
                     /translation="MKTPLTIILVMTVAVLIPGFAVATSLSGKGPVTDPSSNPPPQPP
                     PLTKRQVVKKYVKSCGKKPAKEANCDTLRKDVVGIVKDSLHTLGSSTKRAYVPTIVKF
                     FKNDEVVLRIAAADAMGMIGPQDQDMDALATS"
BASE COUNT          286 a          279 c          284 g          205 t
ORIGIN      
        1 aagccaatgc gcaaggcctc acgaaggaag aattggacgc ccagattcaa cagaacctga
       61 acaccccgat tgcttgcggc tgcagcgtac aggacgaacg cgacctcgat agccgcatta
      121 acagcttgta cgcaatactc caggaattcc agacgcagaa gcagccctat ggcgggagca
      181 aacagacgct gactccagcg attcgaaaca cgatttctca agcggtcaat caacgaatta
      241 acgctgtgaa ggatcccaag gccacagttg ctggtgcaac cacctatgat ttcggttgtt
      301 tcacactcat tgactctgcc gcaactccct gcctgcgtgg agccatcgac gaccatgagt
      361 cggtgcacag agccgcctgt gacgcccaca gctcagctga ttggcggtat agccaaacag
      421 tcgaggattg gatacaggaa gaattagtcg cctatgacaa agagttaaag cgattgctcg
      481 aagaacgaaa caagcggctg cccttttgca aactcgatcc gagcgtcaaa aaagcgctgc
      541 aggacatcgc aaatgataaa gagcgggaac aggaagcaca gcagatcgcg gactggttcc
      601 tagggctctt caactgacat ggtgcttatg catacgtcgg gaggaagact catgaagacg
      661 ccgttgacaa ttatcttagt gatgaccgtc gccgtgctca ttcccggctt tgccgtagcc
      721 acttctctat cgggtaaagg tcccgtgacc gatccgagtt ccaacccgcc gccgcaaccc
      781 ccacctttga ccaaacggca ggtcgtaaag aagtatgtga agagttgcgg gaagaagcca
      841 gcgaaggagg cgaattgcga tacgttacga aaagacgtgg tggggatcgt caaagacagt
      901 ttgcatacat tgggctcgtc aactaaacgc gcgtatgtgc cgaccattgt gaaattcttc
      961 aagaacgatg aggtcgtgct acgaattgcc gcggctgatg ccatgggcat gatcggaccg
     1021 caggatcagg atatggacgc gcttgccact tcgc
//
LOCUS       DATCGC010001830         1367 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_391217, whole genome shotgun sequence.
ACCESSION   DATCGC010001830 DATCGC010000000
VERSION     DATCGC010001830.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1367)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1367)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1367
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_391217"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            28..>1367
                     /locus_tag="VIJ87_17495"
     CDS             28..>1367
                     /locus_tag="VIJ87_17495"
                     /inference="COORDINATES: protein motif:HMM:NF014589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase N-terminal
                     domain-containing protein"
                     /protein_id="HEY5446221.1"
                     /translation="METYLDYSPAGFSSFLKSMPLWMREKLWMPDLIRTELAKTDGEE
                     DERRAKKLGKKFEWKLLFGDHHESHAASAFYPSPFEEAAILTIDGVGEWATSSIGVGK
                     GNEITLLKELRYPDSLGLLYSAFTYYTGFKVNSGEYKVMGLAPYGEPKYVEAIKNNLL
                     EIGEDGSLRMNHDYFSYSQGLRMTNKAFDKVFGGPPRKPETRISQREMDLARSIQVIT
                     EEVMLKMVRFAKRETQMKHLCLAGGVALNCVANGRVLREVPFDGIWIQPAAGDAGGSL
                     GIALAIWHRYLNKPRTSAESIGKWKPQDQIRSNGLPAYADAMKGSYLGPRDSEEEIAK
                     FLMSKSVPYQRHSREDLPGVVADLLAQGKVIGLHQGRMEFGPRALGGRSIIGDARSPE
                     MQSVMNLKIKYRESFRPFAPSVLRERVSEWFDLDTDSPYMLLVADVNESKRRTMT"
BASE COUNT          341 a          328 c          382 g          316 t
ORIGIN      
        1 aaacctctcc taaagtttga ccgactcctg gaaacgtatc tcgactactc ccccgccggc
       61 ttttcttcgt ttctcaaatc tatgccgctc tggatgcgtg aaaaactttg gatgccggat
      121 ctcattcgca ctgagttggc caaaaccgac ggtgaggaag acgagcgaag agcaaagaaa
      181 cttggcaaaa agtttgaatg gaaacttctc tttggtgatc atcacgagag tcacgctgcc
      241 agcgcgttct acccgtctcc gtttgaggaa gccgcgatcc taaccatcga tggcgtcggc
      301 gagtgggcaa ccagttcaat cggagtaggc aaaggcaacg aaatcacgtt gctcaaggag
      361 cttcgttacc cggacagtct tggtcttctc tacagcgctt tcacctacta caccggattc
      421 aaagttaaca gtggcgagta caaagtcatg gggcttgccc cgtatggcga gcctaagtac
      481 gtcgaggcaa tcaagaataa tttgctggag attggcgagg acggaagtct ccgcatgaat
      541 cacgactact ttagctactc gcaaggctta cgaatgacaa acaaagcttt cgataaagtc
      601 tttggtggtc caccgcgtaa gccagagacg cgcatcagtc aacgcgagat ggatctcgcc
      661 cgcagtattc aagtgattac tgaagaagtg atgctgaaga tggtgcgctt tgccaagcgt
      721 gaaactcaaa tgaagcacct ttgtctcgct ggaggggttg ccctgaactg cgttgcgaat
      781 ggacgcgttt tgcgagaggt tccgtttgat ggtatctgga ttcaaccggc ggctggagat
      841 gcgggtggtt cacttgggat tgccctggcg atctggcacc ggtatttgaa taagccgcga
      901 acgagtgcgg aaagcatcgg gaaatggaag cctcaagatc agataaggtc gaatggttta
      961 cctgcgtacg cagacgcgat gaagggttcc tacttaggcc cacgcgattc agaagaagag
     1021 atcgcgaagt ttctgatgtc gaaaagtgtt ccttaccagc ggcattcgcg tgaggatctg
     1081 cctggcgttg tggctgatct tttggcgcaa ggaaaagtaa ttggtcttca tcagggccgc
     1141 atggaatttg ggccacgggc gttaggcgga cgaagcatca ttggcgacgc gcgttcgcct
     1201 gaaatgcaat ccgtgatgaa tctcaagatc aagtatcgcg aaagcttcag accgtttgcg
     1261 ccaagcgttt tgcgagaacg agtctcggaa tggtttgacc tcgacacgga cagcccttac
     1321 atgttgctcg tcgctgacgt gaacgaatca aaacggcgca cgatgac
//
LOCUS       DATCGC010001831         1537 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_59663, whole genome shotgun sequence.
ACCESSION   DATCGC010001831 DATCGC010000000
VERSION     DATCGC010001831.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1537
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_59663"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1081
                     /locus_tag="VIJ87_17500"
     CDS             <1..1081
                     /locus_tag="VIJ87_17500"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEY5446222.1"
                     /translation="IGSHLVDALVAEGHRVRILDALVPQVHGDVVPPHLNPSAEFLRA
                     DVCSRDAVDNALEGIDAVFHEAAEVGVGQSMYEIERYVRANDLGTAVLLEAILARRSQ
                     IKKLVVASSMSIYGEGACHCGECGTVYPQLRPSEQLIDRRWELECPTCGKVLSPVGTP
                     EEKPLFPTSVYAVTKQDQEQFCLAIGRSYKIPTVALRYFNVYGTRQALSNPYTGVCAI
                     FSARLLNGNSPMIFEDGGQTRDFVHVSDIVQANLLALQTDRADYQAINVGTGVATSIH
                     TVCNLLSKGLGVDIEAELVGKYREGDIRHCVADISKARELLGYEPKVSLATGIPELLS
                     WVRAQAAQDQVVGATAELESRQLVR"
     gene            1119..>1537
                     /locus_tag="VIJ87_17505"
     CDS             1119..>1537
                     /locus_tag="VIJ87_17505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446223.1"
                     /translation="MQTSRTRFLILALFAFLPSFVKRAFYKLFFGYRIGKRVKIGLSI
                     LDVGSCVIADDVRIGHFNVITRVEKLTIGDHVRIGHLNIIRGGDEVSLGRYSEIIRMN
                     EINSIPEPDVVNDLDPRFLLGDGSIVTTGHKIDFTDRV"
BASE COUNT          365 a          347 c          426 g          399 t
ORIGIN      
        1 cattggttct catctggtgg atgcactggt ggctgaggga catcgcgtac gcatcctgga
       61 tgctttagtg ccgcaggtgc acggtgacgt cgtacctcct cacttgaacc caagtgctga
      121 attccttcgt gctgacgttt gcagtcggga cgctgtcgac aatgcgcttg aaggaatcga
      181 cgctgtgttt catgaagccg ccgaagttgg ggtcggacag tcgatgtacg agatcgagcg
      241 ctatgttcgc gcaaatgatc tgggaacggc ggtactgctc gaggcgattc ttgcgagacg
      301 atctcagatc aagaaactgg tagtcgcgtc gtcaatgtcg atctacggtg aaggtgcttg
      361 tcactgtggc gagtgcggaa cggtctatcc ccaattgcgg ccaagtgagc aattaattga
      421 tcgtagatgg gagcttgaat gcccgacttg tggcaaggtg ctgagtccag ttggtactcc
      481 cgaagagaag ccattgtttc caacttcagt ctatgccgtg actaaacagg atcaggaaca
      541 gttctgtctg gcaattggtc gatcctacaa gattcccact gtggctctta gatacttcaa
      601 cgtttacgga accaggcagg ctctatccaa tccgtacacc ggcgtatgtg cgattttttc
      661 cgcccgtctg ttaaatggaa acagtccgat gatcttcgaa gacggaggac agactcggga
      721 ttttgtgcac gtgagcgaca ttgttcaagc gaatctcctg gccttgcaga cggaccgagc
      781 tgattaccag gcaataaacg tcggaactgg cgtggccacg tcgatccaca cagtctgcaa
      841 tctcttatct aaaggacttg gagtagacat tgaagctgag ctcgtcggca aataccgcga
      901 aggcgatatc agacattgtg tcgccgatat ctcaaaagcg cgcgagttgc ttggttatga
      961 accgaaagtt tcgctcgcga ccgggattcc tgaattgctc agctgggtgc gagctcaagc
     1021 agcgcaagat caggtagtag gcgcgactgc tgaactggaa agtcgacaac tagttcgttg
     1081 atgaaaagtt cttttgtgaa gatctaattc gagaactgat gcaaaccagc agaacacggt
     1141 ttctgatttt ggcgttgttt gcttttttgc cttcgttcgt taagcgtgca ttctacaagt
     1201 tgttctttgg ataccggatt ggcaaacgtg taaagattgg tctgagcatt ctcgatgtgg
     1261 gcagctgcgt aattgctgac gatgtgcgga taggacattt caatgtaatc acgcgcgtgg
     1321 agaaattgac gatcggtgat cacgtgcgaa tcggtcattt gaatatcatt cgcgggggtg
     1381 acgaagtttc ccttggacgt tactcagaaa tcatacgaat gaacgaaatc aactcgatcc
     1441 cggaacctga cgtcgtcaat gatctcgatc cccggtttct actgggtgat ggaagtattg
     1501 tcacgaccgg tcataagatc gattttacgg atagagt
//
LOCUS       DATCGC010001832         1004 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_491928, whole genome shotgun sequence.
ACCESSION   DATCGC010001832 DATCGC010000000
VERSION     DATCGC010001832.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1004)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1004
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_491928"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1004
                     /locus_tag="VIJ87_17510"
     CDS             <1..>1004
                     /locus_tag="VIJ87_17510"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family peptidase"
                     /protein_id="HEY5446224.1"
                     /translation="LTVAFWVSAQNQTKQQIPDKRLTSVPGELLVRFRPTSELAKLKG
                     KSSVSLRLVFRGKTLPIQIEDFGGSDLVEGLMLGHVSPAETLDAMIALQMRSDVVYVE
                     PNFVRYIDAVPNDPQYVDQFALKNSAPGGAGISAESAWDTTTGNHSVVVGVIDSGIDI
                     NHLDLKDNIFVNTAEIANNGVDDDNNGKVDDVNGWDFFNNDKTVFDNANDDAHGTHVA
                     GTIGARGNNAIGIAGVNWDVQLMPLKALGPDGGSDATILQAYAYAKMMRQRGVNLRVL
                     NNSYGNQGFSQALRDGVKELGDIGILFVAAAGNETTNNDFIPQFPASFDLPNVISVAA
                     S"
BASE COUNT          259 a          259 c          253 g          233 t
ORIGIN      
        1 ttaaccgttg ctttttgggt ttctgctcaa aaccaaacta agcaacaaat tcccgacaag
       61 cgacttactt ccgtaccggg cgaattgtta gttcgttttc gaccaacctc ggaacttgca
      121 aagctgaagg gcaaatcatc cgtcagtctt cgtttggtgt ttcggggaaa aacgttacca
      181 atccaaatcg aagatttcgg tggttctgac ctggtcgaag gcctgatgtt aggacacgtc
      241 tcgcctgccg agacactcga cgcgatgatc gctttgcaaa tgcgtagcga cgtcgtctat
      301 gtagaaccaa actttgtccg atacatcgat gcggttccga acgatcctca atatgtcgat
      361 cagtttgcac taaagaactc cgctccagga ggcgcaggca tcagcgccga atcagcgtgg
      421 gacacaacca ctggtaatca cagtgtcgtc gtcggagtga ttgattctgg tatcgacatc
      481 aaccacctcg atttgaaaga caacatcttc gtcaacaccg cggagatcgc aaacaacgga
      541 gttgatgacg acaacaatgg caaagtcgac gatgtgaacg gctgggattt ctttaacaac
      601 gacaagacag ttttcgacaa cgccaacgat gacgcccacg gaactcacgt cgccggcacg
      661 atcggcgcgc gcggtaacaa cgcaattggt atcgccggtg tgaactggga tgtgcaattg
      721 atgccgctga aggctctcgg tccagatggt gggtctgatg cgacgattct ccaagcttac
      781 gcctacgcga agatgatgcg gcaacgtggc gtcaacttac gtgtgctcaa caacagctac
      841 ggtaaccagg gcttttcaca agccttgcga gatggcgtta aggaattggg cgatatcgga
      901 attctgtttg tcgcagcagc cggcaatgaa accacaaaca acgacttcat tccgcaattt
      961 cccgcaagtt ttgatttacc aaacgtcatc tcggttgcgg cgtc
//
LOCUS       DATCGC010001833         1168 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_423901, whole genome shotgun sequence.
ACCESSION   DATCGC010001833 DATCGC010000000
VERSION     DATCGC010001833.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1168)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1168)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1168
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423901"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..224
                     /locus_tag="VIJ87_17515"
     CDS             <1..224
                     /locus_tag="VIJ87_17515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446225.1"
                     /translation="IHPIEVVSREGLWKILDIGVIDGLLHSIGEAVTEAGRLGRHLQA
                     GLVRGYAAIILLGALVLIGVFAAYSIYAR"
     gene            228..>1168
                     /locus_tag="VIJ87_17520"
     CDS             228..>1168
                     /locus_tag="VIJ87_17520"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HEY5446226.1"
                     /translation="MPHLLTILILLPTIGALAAILYSLTPGSREDHYKWIALVTTIST
                     FGISLLLLTGLGADSSAFRFEENAIWIGSIGTRYHVAVDGISLWLVLLTTLLMPIAIL
                     SSWTAIKKRQLTYYVFLLILASAMIGVFVSLDLLLFYLFFEASLIPMFFLIGIWGGER
                     RIYAAIKFFIYTAVGSLLMLVAIIALYFSYQTFDYTTLVHAMAANPLPAKPHQYLLFG
                     AFALAFCIKVPLFPLHTWLPDAHTEAPTAGSVILAGVLLKMGTYGLLRFNLGLFPEMA
                     HAFAPAIIILAIIGIIYGALVAMVQPDVKRLVAYSSV"
BASE COUNT          223 a          310 c          289 g          346 t
ORIGIN      
        1 ttattcaccc gatcgaagtc gtatctcgtg agggactatg gaagattctt gatattggcg
       61 tgatcgatgg tctcttgcat tcaatcggag aggctgtgac tgaagctgga cgactaggac
      121 gccatctaca agccgggttg gttcgtggct acgccgcgat cattttgctg ggggccctcg
      181 tgcttattgg tgtctttgcc gcgtattcga tttacgcacg atagtttatg ccgcacttat
      241 taacaattct gatcttgctg ccgactatcg gcgctctggc tgcgattctc tacagcctta
      301 caccgggcag tcgcgaagac cactacaaat ggattgctct cgttacgacg atttcgacct
      361 tcggcatttc tcttctcctt ttgacaggtc tcggtgctga tagttcggca ttcagatttg
      421 aagagaacgc gatttggatc ggctcaattg ggacgcgtta ccacgtcgcc gttgatggga
      481 ttagtctgtg gttggtcttg ctgacaaccc tgctgatgcc gatcgcaatt ctttcaagtt
      541 ggacggcaat caagaagcga caactcactt attacgtttt tcttctgatc ctggcgtcgg
      601 caatgatcgg cgtgttcgtg tcactcgatc tgctgctgtt ctatttgttc ttcgaagcat
      661 cgttgatccc aatgtttttc ctcattggta tctggggcgg agaacgaagg atttatgcgg
      721 cgatcaagtt tttcatctat accgcagtcg gcagcctttt gatgttggtg gcgattatcg
      781 cactttactt ttcgtatcag acctttgact acaccacgct cgtccatgcc atggctgcga
      841 atccacttcc ggcaaagccg catcagtact tgttgttcgg cgcttttgca ctcgcgtttt
      901 gtatcaaggt accgctgttc cccttacaca catggttgcc cgatgcccat actgaagcgc
      961 caaccgccgg ctccgtcatt ctcgccggcg tattgctcaa gatgggcacc tatggcctct
     1021 tgcgattcaa cctgggtctc ttcccagaaa tggcccacgc attcgcaccg gcgatcatca
     1081 tcctcgctat tatcggaatc atctatggcg cactggtggc gatggttcaa ccggacgtca
     1141 aacgactcgt cgcctactct tcagtgag
//
LOCUS       DATCGC010001834         1170 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_423904, whole genome shotgun sequence.
ACCESSION   DATCGC010001834 DATCGC010000000
VERSION     DATCGC010001834.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1170)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1170
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423904"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..530)
                     /locus_tag="VIJ87_17525"
     CDS             complement(<1..530)
                     /locus_tag="VIJ87_17525"
                     /inference="COORDINATES: protein motif:HMM:NF012804.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HEY5446227.1"
                     /translation="MNPSLEPMDEQTARRDLITVCHLMYERSYVVSSDGNVSVRLDDG
                     RILATPTMTCKGRMTDDLIAVTDIDGKKLNERKASSELAMHLLIYRERPDVKAVCHAH
                     PPHGTAFAVAGLAIDQPILSEVILTLGCVPLASYGTPSTDELTQQMQPLVKHHNALLM
                     ANHGAVAYGSDLWQAW"
     gene            complement(527..>1170)
                     /locus_tag="VIJ87_17530"
     CDS             complement(527..>1170)
                     /locus_tag="VIJ87_17530"
                     /inference="COORDINATES: protein motif:HMM:NF003995.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="redox-sensing transcriptional repressor Rex"
                     /protein_id="HEY5446228.1"
                     /translation="LHAAGIKTISSQSLAEQFNLNSAQIRKDLGYFGEFGVRGVGYYV
                     NDLRDHITKILGLDNPHRVGIVGAGRLGTALANYNGFGRSNFSVAALFDSDSQKIGKR
                     IGEGKILVRDVEKMAEVIKAESIDVMVMAVPAKVAQKVLNQIMSAGIKAVLNFAPVTL
                     QVRRGVKVKTVDLTTSLESLSYFLATPPSSSITNAKPQRNRSVVAELDEDVRV"
BASE COUNT          264 a          319 c          295 g          292 t
ORIGIN      
        1 tcccaggctt gccaaagatc acttccataa gcgactgcac cgtggttcgc catcaagagt
       61 gcgttgtgat gtttgaccaa cggttgcatc tgttgcgtga gttcatccgt tgaaggcgtt
      121 ccatacgaag caagcggaac acaaccgagc gtcagtatca cttcagaaag aatcggctga
      181 tcgattgcta gtccggcgac cgcgaacgcg gttccgtgtg ggggatgtgc atggcaaaca
      241 gctttcacat ccggacgctc gcgataaatc aacaagtgca tcgcaagttc actcgatgct
      301 tttcgctcgt tgagtttctt gccgtcgatg tcagtaacgg cgatcagatc gtcagtcatc
      361 cgacctttgc aggtcatggt cggtgtcgcg agtatgcgtc catcatcgag acgcacgctg
      421 acgttgccgt ctgaagagac gacatagctg cgttcgtaca tcagatgaca aacggtgatt
      481 agatcgcgcc tggctgtttg ttcgtccatc ggttcaagag aaggattcac actcgaacat
      541 cctcgtccag ttcagcaact acactccgat ttcgctgtgg tttggcattg gtaatggaac
      601 tactgggcgg cgtcgcgaga aaatatgaca atgactccaa cgacgtcgtc agatccaccg
      661 tcttcacctt tactccgcgt cgaacctgca acgttacggg cgcaaaattg agcactgcct
      721 ttataccggc tgacatgatc tgatttagaa ctttctgagc gacctttgcg ggtaccgcca
      781 tcaccattac gtcgatcgac tcagccttaa tcacttcggc catcttctct acatcacgaa
      841 ccagaatctt tccttcacca atccttttcc caattttctg gctgtcgcta tcaaacagtg
      901 cggccacact gaagttcgat cttccgaacc cgttgtagtt cgcgagcgca gtgcccaatc
      961 tcccagcgcc gacgattcca acgcggtgtg gattatcgag gccaagaatc ttggtgatgt
     1021 gatcacgaag gtcgttgacg tagtagccga cgccgcgcac gccaaattcg ccgaagtaac
     1081 cgagatcctt ccggatttga gcggagttta ggttgaactg ttcggccagc gactgcgaag
     1141 agattgtttt gatgcccgct gcgtgcagtg
//
LOCUS       DATCGC010001835         1073 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_258290, whole genome shotgun sequence.
ACCESSION   DATCGC010001835 DATCGC010000000
VERSION     DATCGC010001835.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1073)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1073)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1073
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258290"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..905)
                     /locus_tag="VIJ87_17535"
     CDS             complement(<1..905)
                     /locus_tag="VIJ87_17535"
                     /inference="COORDINATES: protein motif:HMM:NF016232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY5446229.1"
                     /translation="MARRRFRSNQRHEPTTERSFQEYILSTPAPQTSRTELLRLVRGG
                     EDTFLELKVKLSNTEKIAQEIVALANTGGGVIVFGVNDQLRVEGVDDPEGVQEELVRI
                     CREDIQPPLVPFVDRVALDNGRRIVALDVEGKRRPYRTRDGRFYLRIGAEKREASREE
                     LSALLDESRPIRYESIPALGATIADIDEAHLWSYLREFEGGAFEQASAGGYPTPEVLE
                     RDLLLATSNGSEVVPTVAGLLLFGLDDRIAELLPRAAVFATRFSGDSLQSPVIEKVKL
                     SGNLISLYEGLSRFIARYCDLHDARP"
BASE COUNT          248 a          296 c          284 g          245 t
ORIGIN      
        1 ggccttgcgt cgtgcaaatc acaatagcga gcaataaagc gcgacaatcc ctcgtagaga
       61 ctgatcaagt tcccactcag tttcactttt tcaattactg gtgattgcaa agagtcgccc
      121 gaaaaccgtg tcgcaaagac agcggctcgt ggtaacaact cggcgattcg gtcatcaagg
      181 ccgaacaaaa gcagtcctgc taccgtcggg accacttcac taccattgct agtcgcgagt
      241 agaagatcgc gttccaaaac ttcaggggtc ggatatccac cggcgctcgc ttgttcaaaa
      301 gcgcctccct caaattcgcg caggtaactc cagaggtgtg cctcgtcgat gtcggcgatg
      361 gtggcgccaa gtgctggaat gctctcatag cgaatggggc gcgactcatc cagcaacgcc
      421 gataattctt cgcgtgaggc ctctcgtttt tccgcgccga ttcgcagata gaagcgacca
      481 tctcgagttc gatatggccg tcgcttccct tctacatcga gcgcaacaat gcgtcggccg
      541 ttgtccaacg caactcgatc gacaaaaggt acaagcggcg gttgaatatc ttcgcggcaa
      601 attctgacta actcctcttg cacgccttca gggtcgtcaa ctccttcaac acgcaactgg
      661 tcattaacac caaaaacgat cacgccaccg cccgtgtttg ccagggcgac aatttcctgc
      721 gcgatctttt cagtgttgga aagcttgacc ttcagttcga ggaacgtgtc ctcgccgcct
      781 ctaacaagcc ggagaagttc tgttctggaa gtttgcggcg ctggggttga aaggatgtat
      841 tcctgaaagg aacgctccgt ggtcggttcg tgacgctggt tgctgcgaaa tcttctgcga
      901 gccatttgtg tattgacggg gctcttgaga attggcgtct gacggtgcca cctcaacccg
      961 cccggatgcg agccgaactc tgcatctctg gagtttcaaa acttgaacgc gacgagtgta
     1021 gcacaagggg gacggacgcc tcagtggatt gaacaagctg gtaagagtgg caa
//
LOCUS       DATCGC010001836         2140 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_59763, whole genome shotgun sequence.
ACCESSION   DATCGC010001836 DATCGC010000000
VERSION     DATCGC010001836.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2140)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2140)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2140
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_59763"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..532
                     /locus_tag="VIJ87_17540"
     CDS             <1..532
                     /locus_tag="VIJ87_17540"
                     /EC_number="3.5.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF016824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004359 - glutaminase activity [Evidence
                     IEA];
                     GO_process: GO:0006541 - glutamine metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glutaminase"
                     /protein_id="HEY5446230.1"
                     /translation="FYSRAAGDKLTLIDEVYKSEAATNAGNKALSMLLAKFERIYADP
                     FESVDIYTKQCSVGVNVIQLARMGATLANNGKNPVTGEQVIKAENVPYILSTMTMAGL
                     YDGSGGWAWKVGLPAKSGVGGGIVAIVPGKGAIAVFSPRLDEAGNSVKAQRVIEYVAN
                     KLDFNVFSPRSVGLKG"
     gene            554..1738
                     /locus_tag="VIJ87_17545"
     CDS             554..1738
                     /locus_tag="VIJ87_17545"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY5446231.1"
                     /translation="MQASATGGSVIQRCGVWLAFHTLAKSFHTPARYGPANTGLRAIS
                     VARVLMIFIALLAYPMSGRSQSNNYLFNDSHFHLTNYIQEGIDIHDFLKIMGNKAGRV
                     ALFGIPLQQQWSYRVDGDRAPTYYLNSDAPLYYYSFTDASIASAYKSLSKEEQTRFDP
                     MITGFNPTDMYAADHIRRVLKTFPGVFSGIGEFSIHKEFVSAKISGVVASLQDPALDR
                     LIDFASEVGLVILIHNDVDVPFAKPGAEPAYAREMKALFQRHPNATLIWAHIGVGRII
                     RPFKDQAVIIENVINDPKLSHIYFDISWDEVAKYIVATPESTKNTASLINRHPDRFLF
                     GTDEVAPPDQEKYLKVYNQYEPLWKLLTPEASEKVRKGNYERIFDEARRKVRSWEAAN
                     VK"
     gene            1862..>2140
                     /locus_tag="VIJ87_17550"
     CDS             1862..>2140
                     /locus_tag="VIJ87_17550"
                     /inference="COORDINATES: protein motif:HMM:NF023165.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3300 domain-containing protein"
                     /protein_id="HEY5446232.1"
                     /translation="MPLTRAGHVHAQSGVKPQSDAQKQNVAQTEEDDEPEVKIPADQL
                     DALVAPIALYPDPLLAQTLAASTYPLELIQLQQWLEKNPELAKDQKKLA"
BASE COUNT          563 a          539 c          548 g          490 t
ORIGIN      
        1 cttttacagc cgcgccgcgg gtgacaagtt gacgctaata gatgaggttt acaaatctga
       61 ggcagcgacc aacgcaggca acaaagctct gtcaatgctg ctggcgaaat tcgaacgcat
      121 ctatgccgac ccgtttgagt cggttgatat ttatacgaag caatgctccg tcggcgtgaa
      181 tgtcatccag ctcgcgcgca tgggtgcgac cctggcaaac aacggcaaga acccagtaac
      241 gggcgagcag gtaatcaagg ccgagaatgt tccttacatt ctctcaacca tgaccatggc
      301 cggcttgtat gacggctcag gcggatgggc ctggaaagtt ggcttgcccg cgaagagcgg
      361 tgttggtggc ggcatcgtag cgatcgttcc gggcaaaggt gcgatcgccg ttttctcacc
      421 aaggcttgac gaagcaggca acagcgtcaa ggcacagaga gtaattgaat acgttgctaa
      481 caaacttgac ttcaacgtct tttcgccacg ttcggttggt ctgaagggtt aatgactttt
      541 agaaggctga cttatgcaag catcggcgac aggggggtca gtaatacaac gctgcggcgt
      601 gtggctcgcc ttccacacac tggcaaagtc attccacacg ccagcgcgtt atggacctgc
      661 caatacagga cttcgtgcga tctcagtcgc ccgcgtcctg atgatcttca tcgcattgct
      721 cgcgtatcca atgtcggggc gatcgcaatc gaataactat ctcttcaacg attctcattt
      781 tcatctgact aattacattc aggaaggaat cgacattcac gacttcctga agatcatggg
      841 aaacaaagca ggtcgtgtcg cactctttgg aatcccactt cagcagcaat ggtcctatcg
      901 agtcgatggc gaccgtgcac caacttacta ccttaattcc gacgctccgc tctattacta
      961 ctcattcact gatgcctcga tcgcctcagc atataagtct ctgtcaaaag aagagcagac
     1021 tcgcttcgat ccgatgatta ccggattcaa tccgactgac atgtatgcag cggatcatat
     1081 tcgacgtgtg ctcaagactt ttcccggagt ctttagtggg atcggcgaat tcagcattca
     1141 caaagaattt gtctcggcaa agatttcagg tgtggttgcc agtcttcagg atccagctct
     1201 cgatcgactg atcgacttcg cgagtgaagt aggcctggtg atcctgattc ataacgacgt
     1261 ggacgtccct tttgcgaagc ctggagccga gccggcatac gcgagagaga tgaaggcctt
     1321 atttcaacga catccgaacg ccacccttat ctgggcgcat atcggggtgg gtcgaatcat
     1381 tcgtcctttt aaagaccagg ccgtcatcat cgaaaacgtc attaacgatc cgaagctcag
     1441 tcatatctat ttcgacatct cctgggatga agtggcgaag tacatcgtgg ctacccccga
     1501 gtcgacaaaa aatacggctt cactaatcaa ccgacatcca gatcgatttc tttttggcac
     1561 tgacgaagta gcgccacccg atcaggaaaa atatctgaag gtctacaacc agtatgagcc
     1621 tttgtggaag ttactgactc ctgaggccag tgagaaagta cgcaaaggaa actacgaaag
     1681 aatttttgat gaagcgagac gaaaggtccg cagctgggaa gcggcgaatg tgaagtgatt
     1741 taaaactgtt aattagagcc gatcaggagg cttgaatgaa atgaaaagac tacgaacaga
     1801 tagtgcacta agagttcgct gcattgggtt aatcacctgc gcggctttga tcctcactgg
     1861 aatgccgctg acgcgcgccg gacatgttca tgcgcaaagt ggcgtgaaac cacaaagtga
     1921 tgcgcaaaag caaaatgttg cgcaaacgga agaagatgat gagccagaag tgaaaatacc
     1981 cgcggatcaa ctcgatgccc tggtcgcgcc gattgcgctc tacccggatc cattgttggc
     2041 ccagacgctg gcggcgtcga cttatccgct cgagctcatt caacttcaac aatggctgga
     2101 aaaaaatccg gagctcgcca aggatcagaa aaagttagcg
//
LOCUS       DATCGC010001837         1108 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_423964, whole genome shotgun sequence.
ACCESSION   DATCGC010001837 DATCGC010000000
VERSION     DATCGC010001837.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1108)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1108
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423964"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(197..>1108)
                     /locus_tag="VIJ87_17555"
     CDS             complement(197..>1108)
                     /locus_tag="VIJ87_17555"
                     /inference="COORDINATES: protein motif:HMM:NF021589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HEY5446233.1"
                     /translation="SGLNETAGNVTMSLTHNFSSRLSFYASLYGTYQNQPNFQSNVGP
                     ENVVSPFFDTVDIFALTYHWSSRLSLVTSYTFERVQYFSSSNGNSQNGVQNTLAQNRI
                     QNTFSEEFQFSLTSRTVLLSEYRFETINYDTAPTDSTTHFILGGVHHHLTEHLIAHLL
                     AGESFRSLENAGDSALPYFEGSLDYVRSNHSLNWTTSYGFESPTAGGATTTKTLRTGL
                     NLTYGLTSRLSSVTGIYYHHDDNQGGTGSSSMGTQDSFELNLGLHYTINKHFTLHLDY
                     NHSTQGSMGSTSGYSRNRYFGGLTYTY"
BASE COUNT          290 a          255 c          300 g          263 t
ORIGIN      
        1 aaaatcgcca cgtcttccca tgtttcgacg gcgcaaatcg ggagacgtta cctctttgcg
       61 cgggaataat cgtttcgcga ggcccggctt cgtttgatga aggggacatt tcgaaggagt
      121 ctctcaggca gcgtcaaaca ataattgtca atctcgtccc cagacccggt gaccaagcta
      181 tctcgtttgt agattctcag taggtgtagg tcaacccacc gaaatagcga tttcgcgagt
      241 agccggaagt cgatcccatc gaaccctggg tgctatggtt gtagtcaagg tgtaaggtaa
      301 aatgcttatt aatcgtataa tggaggccga gattgagctc gaaagaatcc tgcgtcccca
      361 tggagctgct tccggttcca ccctgattat catcatgatg ataataaatt ccggtcaccg
      421 aactgagccg cgaagttaaa ccgtaagtca ggttcaagcc agtccgcaac gtctttgtgg
      481 tcgtagcgcc tccagccgtg ggcgattcga acccatagct tgttgtccag tttagcgaat
      541 ggttgctcct cacgtaatcc agcgaacctt caaagtaagg gagggccgaa tccccagcgt
      601 tctcgagaga gcgaaatgat tcacccgcga gaaggtgagc aatcaagtgc tcagttaaat
      661 gatgatggac tccaccgagg atgaaatgag tcgtggagtc ggttggggca gtgtcgtaat
      721 taatcgtttc aaaacgatat tcgctcaaaa gaaccgtgcg actggtgagg ctaaattgaa
      781 attcctcgct aaacgtattc tgaatacggt tctgagcaag cgtgttctga acaccgttct
      841 gagaatttcc gttcgacgag gaaaagtact gaacgcgctc gaacgtgtag cttgtcacca
      901 aggaaagtcg cgaagaccaa tgataagtaa gcgcaaaaat atccactgtg tcgaagaacg
      961 ggctgaccac gttctccggg ccaacattgg attggaaatt tggctggttc tggtaagtgc
     1021 cgtaaaggct ggcgtagaag gaaagccgac tggaaaagtt atgggtgagg gacatggtga
     1081 cgtttccggc agtctcgttc aggcccga
//
LOCUS       DATCGC010001838         1097 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_459751, whole genome shotgun sequence.
ACCESSION   DATCGC010001838 DATCGC010000000
VERSION     DATCGC010001838.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1097
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_459751"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            167..>1097
                     /locus_tag="VIJ87_17560"
     CDS             167..>1097
                     /locus_tag="VIJ87_17560"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEY5446234.1"
                     /translation="MNIRKTLFCFLLLCVAAGFPQPGQVAPERVQITILGTTDLHGNI
                     NPIDYYTNKPDNRGLAKVATLIKRIRGEQPNVLLIDSGDTIQGSPLESFHGRKNNQPR
                     DPMMLVMNSLKYDAMTVGNHEYNFGLKVLEKARQEAQFPWLSANTYETKTGKTHYQPY
                     LIRDVAGVKIGILGLTTPGIPNWDNPPNYAGLEFHNPILEAKKWVAVLRDKEKVDVVV
                     VAMHMGLGEDLRTGEVSPGQVPHENDAVQIAKQVPGIDVIFMGHTHRDVPSLYINGVL
                     ITQANAWGRHLARADMYLEKSPKGWQVYAKAART"
BASE COUNT          287 a          290 c          267 g          253 t
ORIGIN      
        1 ccacccttcc cagcttgttc gacccactgc ggcgtccatt acccttcaca gcttttggac
       61 acacagcggc gtccttgcca cccatagagt tgaatttgat cctccacgag ccgtaaagtc
      121 agagcctctc caacaatccg gttattagtt taggtcgcta aacaacatga atattcgaaa
      181 aacactattc tgctttttgc tcctctgtgt agcggcaggg tttccgcagc caggtcaggt
      241 tgcacccgaa cgagttcaaa ttacgattct cgggacgact gatttgcacg gcaacatcaa
      301 tccaatcgac tactacacaa acaagccaga caatcgcggg cttgcaaaag tcgctactct
      361 gatcaaacgc attcgcggtg aacaacccaa cgtcttattg atagattcgg gcgacacgat
      421 ccagggttca ccccttgaat catttcatgg tcgcaaaaat aaccaaccgc gcgatccgat
      481 gatgttagtg atgaattctc tcaagtacga cgcgatgacg gtcggcaatc atgaatacaa
      541 ctttggtttg aaagtattgg aaaaagctcg acaggaagca cagttcccct ggctatcggc
      601 gaatacttac gaaacaaaga ccggtaaaac ccattaccag ccctacctta ttcgcgacgt
      661 cgccggtgtg aagattggga tacttggttt gacgactccg gggattccaa actgggacaa
      721 tccaccaaac tacgctggtc ttgagtttca taacccgata ttggaggcga agaagtgggt
      781 cgcggttctt cgcgataagg agaaagtcga cgtcgttgtt gttgcgatgc acatgggcct
      841 tggggaagac ctccgaaccg gtgaagtgag tcccggtcaa gtgcctcatg agaacgacgc
      901 cgttcaaata gcgaaacagg ttcctggtat cgatgtgatc ttcatgggcc acacccatcg
      961 agacgtgcct tcgctgtaca tcaatggcgt tcttatcacg caggcaaacg cgtggggacg
     1021 gcatctcgct cgcgccgata tgtatcttga aaaatcgccg aagggttggc aggtctatgc
     1081 gaaggccgca cgaacaa
//
LOCUS       DATCGC010001839         1434 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_491997, whole genome shotgun sequence.
ACCESSION   DATCGC010001839 DATCGC010000000
VERSION     DATCGC010001839.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1434)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1434)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1434
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_491997"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..420)
                     /locus_tag="VIJ87_17565"
     CDS             complement(<1..420)
                     /locus_tag="VIJ87_17565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446235.1"
                     /translation="MAGDEKRIQALFSELRFEDQSLAPSFKRLWQSAQATKPKRLLFV
                     EPMVVLGSVAMIVAFAMWTRDTSTQPAFERDVAAVVPTVDSRVEAPKKLSSRKRRPLQ
                     RKKAWPKEPEHVVIEQAAVLSSWQSPTNALMEFTAGTV"
     gene            complement(380..925)
                     /locus_tag="VIJ87_17570"
     CDS             complement(380..925)
                     /locus_tag="VIJ87_17570"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEY5446236.1"
                     /translation="MELAELRLQLEELHTASFGWALSCCRQNYAEAEEVLQTVYLKIL
                     QGKASFDGQSKLQTWLFAVIRNTAISERRKSLVRSIATPSFENTIDARSQIELERSEV
                     QQRFQAALQRLPARQRETLHLVFYQELSLSEAAQVMSISIGSARQHYERGKKRLRELL
                     DREEMDYGIGWRRKENPGTVL"
     gene            1222..>1434
                     /locus_tag="VIJ87_17575"
     CDS             1222..>1434
                     /locus_tag="VIJ87_17575"
                     /inference="COORDINATES: protein motif:HMM:NF020921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446237.1"
                     /translation="MIPTKSMVNDLSAYGVARSTIQGTPLNEDEARKTQAFWSACNYL
                     ALGMIYLQANPLLNEPLKADHIKNRML"
BASE COUNT          333 a          406 c          338 g          357 t
ORIGIN      
        1 caccgtgcct gctgtaaatt ccattaacgc attcgttggt gactgccaac tagaaagaac
       61 cgccgcttgt tcgattacaa cgtgctcagg ctccttcggc caagctttct ttctctgcag
      121 cggtcgacgc tttcttgacg acagtttctt tggtgcttct actcgagagt caacagtggg
      181 aacgacggcc gctacatcac gctcaaaggc tggttgagtc gacgtgtctc tggtccacat
      241 tgcgaaggct acgatcatcg ctactgaacc gagcacaacc attggttcca caaataggag
      301 ccgtttcggc ttcgtcgcct gcgcagactg ccacagccgc ttaaatgacg gagccaggct
      361 ctgatcttca aacctcagtt cagagaacag tgcctggatt ctcttttcgt cgccagccaa
      421 ttccataatc catttcctcg cggtccaaca attcccgcaa acgtttcttg cctcgttcat
      481 aatgttggcg cgcactgccg attgaaatgc tcataacttg cgcggcctcg cttaaactca
      541 gttcttgata gaacacgaga tgcagcgtct ctcgctgtcg ggcgggaaga cgttgcagtg
      601 ccgcctgaaa tcgctgctgc acttctgatc gctcaagctc aatctgagac cgcgcatcga
      661 ttgtgttttc gaaagatggc gtcgcgattg aacgtaccag gcttttgcgg cgctcgctga
      721 tcgctgtgtt tcgaatcacg gcaaacaacc acgtctggag cttactttgg ccgtcgaaac
      781 tcgctttgcc ctgcagaatc ttcaaataaa ccgtctgtag cacttcctcg gcctccgcgt
      841 agttttgccg acaacaactc aacgcccagc caaagctagc ggtgtggagt tcttcgagtt
      901 gtaacctaag ttccgcgagt tccatcggtt ctcagttaat tagtcgcttg agcgggcaga
      961 ttatatgacg aaatcgcaaa tctaatttgc tgagcggctt tggctcgaaa agtcacatct
     1021 taactatttg ggtgcgtgtt aagttcgtgt gatttcgtgg atcgccccgt ttgtccagaa
     1081 aagcaaggac gatccacgaa atcacacgaa ccaacacgaa accaaatact tccgactcga
     1141 gttggatgtg actcttgagt ctaagccccg cttgggccat ttgctaccgc caacgatacg
     1201 gaataccacc cggagaactc gatgattcct actaagtcga tggtcaatga tctcagtgct
     1261 tacggcgtcg cgcgctcgac aatacagggc acgccgctca atgaagacga agcccgcaag
     1321 acccaggcgt tctggtccgc ctgcaattac ctcgcgttgg gaatgatcta ccttcaagcg
     1381 aacccactcc taaacgagcc tttgaaagcc gatcacatca aaaaccgcat gttg
//
LOCUS       DATCGC010001840         1145 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_328069, whole genome shotgun sequence.
ACCESSION   DATCGC010001840 DATCGC010000000
VERSION     DATCGC010001840.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1145)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1145)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1145
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_328069"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..878
                     /locus_tag="VIJ87_17580"
     CDS             <1..878
                     /locus_tag="VIJ87_17580"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5446238.1"
                     /translation="EEQSYVLSKPVRRAQLFAQLSFAFEPDREKSERSTIVAVAARQV
                     RRQPHRLLLVEDNRTNQKIMVMNLAQLGFDTETVTNGREAVDALQRAKYDLVFMDCHM
                     PEMDGYEATTTIRRQEKLGHHTPIIAMTASALPEDRVRCITVGMDDYLSKPLNRDDLR
                     SILERWLNVRPALSPEDSPVAHDALEKLRQLGGSNQSFLSELIDVFRSESLERLKQMK
                     EAAATSDLAKLHDIAHTHRGACINFGAQRMAELCTKMESTTTAEPQLINETIAEIESE
                     FIKVSRVLQGEQAAY"
     gene            complement(875..>1145)
                     /locus_tag="VIJ87_17585"
     CDS             complement(875..>1145)
                     /locus_tag="VIJ87_17585"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HEY5446239.1"
                     /translation="TFRSSDLIARIGGDEFVVFETSNDQIDEGTDVQRLQDNVTRHNA
                     QQVRDYEISLSIGVASMDSDSSMTLEELLKNGDKTMYQQKRNKRR"
BASE COUNT          283 a          264 c          313 g          285 t
ORIGIN      
        1 ttgaggagca gagttacgtg ctatccaaac cagtgcggcg tgcgcagctt tttgcgcagt
       61 tgtcgttcgc cttcgagcca gatcgagaaa agtccgaacg ctccacgatc gtggccgttg
      121 ctgcacgcca ggtaaggaga cagcctcatc gattgctttt ggtggaggac aatagaacca
      181 atcagaaaat aatggtcatg aatctggcgc agctgggttt tgatactgag actgtaacga
      241 atggacgtga ggcagtcgat gccttacagc gagcgaagta cgatcttgtc ttcatggatt
      301 gtcatatgcc ggaaatggat ggctatgaag cgacgacaac gattcgtcgt caagagaagc
      361 tcggacacca caccccgatc attgccatga ctgcgagtgc tttgccggaa gatcgcgttc
      421 gttgtattac ggtgggcatg gacgattatc tgtcaaaacc tttgaaccgt gatgaccttc
      481 gtagcatcct ggagcgttgg ttgaatgtgc gtccggcgct ttcgccggag gatagtccgg
      541 tagcacacga tgctttggaa aagctaagac aactgggtgg ctcgaaccaa agtttccttt
      601 ccgagctgat cgacgttttc cgctctgaga gtctggagcg actgaaacaa atgaaagagg
      661 ccgctgcaac gagtgactta gcgaaacttc atgacattgc gcatacccat cgaggcgcat
      721 gcatcaattt cggtgctcaa agaatggccg agttgtgcac gaagatggaa agcacgacta
      781 ctgctgagcc acagctgatc aatgaaacaa ttgcggagat tgaaagtgag tttattaagg
      841 tcagtcgcgt gctgcaaggt gagcaggcag cgtactagcg acgtttgttt cgcttctgtt
      901 ggtacatagt tttgtctcca tttttgagta gctcctcgag tgtcatcgag gaatcagaat
      961 ccattgatgc gacgccgatg ctcaatgaga tttcataatc ccgaacctgt tgagcgttgt
     1021 gccgggtgac attgtcctgc agtcgttgca cgtcagttcc ctcgtcgatc tgatcgttgg
     1081 acgtttcgaa aacaacaaac tcgtcacctc cgattcgagc gattagatct gaactccgaa
     1141 aagtt
//
LOCUS       DATCGC010001841         1055 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_293047, whole genome shotgun sequence.
ACCESSION   DATCGC010001841 DATCGC010000000
VERSION     DATCGC010001841.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1055)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1055)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1055
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293047"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1055
                     /locus_tag="VIJ87_17590"
     CDS             <1..>1055
                     /locus_tag="VIJ87_17590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446240.1"
                     /translation="NNYIEAQFNNVFIGGAGLPTTNTGIVTNATLSSATLSNVNNLSV
                     GDLVAFPYAACTPASSGLSYAQPWETGKINSINGNNVTFTVVQAQNSCLAGAPDNGGT
                     ARWNGEHIHDVEIRHNTLNKPDVWNSFSVPKAWIEIKEMKNGVIDGNDMYSGVGTNIA
                     LTVRNQDGASPWATIQNVTISNNRMRGYKWGFGLLLTDNEQPTINSGNILISNNLYSL
                     PKPVESSPANFLQMVGGFNVTIQHNTIVQPGSPVVSDTISPQFKFKDNVVANYQYGMN
                     CTVPGGMSACWPDLTMTGNVIIDTRWNKGDGPLAGLYPAGNYYPATAGDVGFVDMAND
                     NYGLTASSPYKNRASDGT"
BASE COUNT          285 a          276 c          264 g          230 t
ORIGIN      
        1 aacaactata ttgaggccca gttcaataac gtcttcatcg gtggggccgg acttccgaca
       61 acgaacacag ggatcgtcac caacgccacc ctatcgagcg caactctgag caacgtcaac
      121 aacctctccg ttggtgatct ggttgccttc ccctacgcag cgtgcacacc agcctcgagc
      181 ggcctaagtt acgcgcagcc gtgggagacc ggaaaaataa attcaatcaa cggcaacaat
      241 gtcacgttca cggttgtgca agcccagaac tcctgtttgg caggtgctcc cgataatggc
      301 ggcacggcac gttggaatgg tgaacacatc cacgatgtag agattcgtca taacacgctt
      361 aacaagcctg atgtgtggaa tagtttttca gttcctaagg cgtggattga aatcaaggag
      421 atgaagaatg gcgtgattga tggaaacgac atgtattccg gagtcggtac taacatagca
      481 ttgaccgtca gaaatcaaga cggagcctcg ccctgggcca cgatccagaa cgtcacaatc
      541 tcgaataacc ggatgagagg ttacaagtgg gggtttgggc tactcctgac tgacaatgaa
      601 caaccgacca tcaacagcgg caatatcttg atcagcaaca acctctacag tctcccaaaa
      661 ccagttgaga gttcgcccgc caacttcctg cagatggttg gtggcttcaa cgtcacgatt
      721 cagcacaaca ccattgtgca gcctggcagc ccggttgtct ctgacacgat ctctccgcaa
      781 ttcaaattca aagataatgt tgttgcgaac tatcagtacg gcatgaactg cactgttcct
      841 gggggaatgt ctgcctgttg gcctgatcta actatgactg gcaacgtgat cattgatacg
      901 cgttggaaca aaggagatgg tccactggca ggcttatatc cggcaggaaa ttactatcca
      961 gcgacggctg gagatgtcgg gtttgtcgac atggcaaacg ataactacgg cctgactgca
     1021 tccagcccgt ataagaatcg cgcctcagac ggaac
//
LOCUS       DATCGC010001842         1620 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_361283, whole genome shotgun sequence.
ACCESSION   DATCGC010001842 DATCGC010000000
VERSION     DATCGC010001842.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1620
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_361283"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..747)
                     /locus_tag="VIJ87_17595"
     CDS             complement(<1..747)
                     /locus_tag="VIJ87_17595"
                     /inference="COORDINATES: protein motif:HMM:NF013567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEY5446241.1"
                     /translation="MTIHKVKWGILGVANIAVKKVIPAMQVGQWSEITAIASRDLARA
                     QSAAKQLGIPKAYGSYEELIADPEIEAIYNPLPNNLHVEWTTRAAQAGKHVLCEKPIS
                     MTVAEALPLLETRDKTGVKIEEAFMVLTNPQWVTTLNMIREGRIGQVRSVAGHFSYNN
                     QDAANIRNIRETGGGGLMDIGCYMIFFSRLIFGTEPKRVVSLVEEHPQTKTDILTSAL
                     LDFPSGHATFTCGTRMTPYQRVQIVGTSGRL"
     gene            complement(886..1326)
                     /locus_tag="VIJ87_17600"
     CDS             complement(886..1326)
                     /locus_tag="VIJ87_17600"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEY5446242.1"
                     /translation="MIKLRDVLVAGIAVISTLAVVVVAAATAQTTVMQSTAFDWNSIA
                     VKQTDVGSVRQFFKSPTVTLDELECHVTTLKPGLQSHPPHQHPNEELIIIREGNVETL
                     SNGEWKKVGPGSVIFNASNQLHALRNVGTTPAVYHVINWKSPGK"
BASE COUNT          366 a          409 c          411 g          434 t
ORIGIN      
        1 caatcgccca ctcgtgccaa caatttggac ccgctggtat ggagtcattc ttgtcccgca
       61 ggtgaatgtt gcatggccgg aagggaagtc gagcagtgct gaagtcagga tgtcggtttt
      121 cgtttgcggg tgttcttcaa ccagcgagac cactcgtttg ggttcagttc caaaaatcaa
      181 tcgcgagaag aagatcatgt agcaaccaat atccatcaat ccgccaccac cggtctcgcg
      241 aatgtttctg atattggcag catcctggtt gttgtaactg aaatgaccag ccactgatcg
      301 aacctgaccg atgcgtccct ccctgatcat gttcagggtg gtgacccatt gcggattcgt
      361 tagcaccatg aacgcttctt caatcttcac tccggtcttg tcgcgcgttt cgaggagcgg
      421 caatgcttcg gcgacggtca tgctgatcgg cttttcacag agaacatgtt tgccggcttg
      481 tgccgccctg gtagtccatt cgacgtgaag attgtttggc agcgggttgt agatggcctc
      541 tatttccgga tcagcgatca gttcttcgta cgaaccgtaa gccttgggaa ttcccaattg
      601 ctttgcagcg ctttgagccc tggcaagatc tctcgatgcg atggcagtga tctcagacca
      661 ctgtccaact tgcattgcgg ggatgacttt tttgacggcg atgtttgcga cgccgaggat
      721 gccccatttg actttgtgaa tcgtcacgat gtgttctact caagctgttg aagtcagtac
      781 cacagcgcat gtccgatatg ctttagcttg tcgtttactt cagctaagag cgtccaatgc
      841 tgaatacttc gacaagctaa agcatatcgg acaccagcat ttttgttatt tcccaggcga
      901 cttccaattg atcacgtgat agacagctgg agtggtacca acattccgca gcgcgtggag
      961 ttgattcgat gcattgaaga tcactgagcc ggggccgacc ttcttccact caccattgga
     1021 aagcgtttcg acgttgcctt ctcgaatgat tattaattct tcattcggat gttggtgagg
     1081 cggatgcgac tgcaagcctg gcttcagcgt tgttacatga cactcaagct catccaatgt
     1141 gaccgtgggg ctcttgaaaa actgtcggac ggacccgacg tcagtttgtt tgaccgcaat
     1201 tgagttccag tcgaaggcag tggattgcat taccgtcgtc tgggcggtgg cggcggcgac
     1261 aacaaccacg gcgagcgttg aaataaccgc gatgcccgca accagaacat ctcgaagttt
     1321 gatcatcctg cgtctcctag tttgcacgtg gcacagactt cagtctgtga acttgagaat
     1381 ggaggagtct ctggtgcacc aaagaatcat tggtcatata tcatttgaca tttttcactt
     1441 ggtcaattga cgaagacgcc gtgtgtttct gagccatcgc agttctgatt cagatgaccc
     1501 actcagaatt atctacttgg aagtttgcgt atacagactg aagtctgtgc cacacgcaat
     1561 ctggtcaccc acgactcagc gaacgccgag caaaatatcg atcgtcaatt gatccaaccg
//
LOCUS       DATCGC010001843         1241 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_293114, whole genome shotgun sequence.
ACCESSION   DATCGC010001843 DATCGC010000000
VERSION     DATCGC010001843.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1241)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1241)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1241
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293114"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..932
                     /locus_tag="VIJ87_17605"
     CDS             <1..932
                     /locus_tag="VIJ87_17605"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glucose-1-phosphate cytidylyltransferase"
                     /protein_id="HEY5446243.1"
                     /translation="WRINCAPNNIAIFAAKPGWRKRSRVATELPLVSKELYASKTGEE
                     TVKVVLFCGGFGMRMREYSEALPKPMVPIGYRPILWHIMKYYAHYGHKDFILCLGYKA
                     DVIKKYFLEYDECVSNDFVLSSGGKNVELLSSDIDDWNITFVDTGLTSNVGQRLKAVR
                     RQLEGEEMFLANYTDGLSDVPLPAVIESFKDSDNVACFVGVKPRASFHLITMESGGVV
                     TSIEHIAKSGMRMNGGFMVLRPEIFSYIKDSEELVEEPFRRLIGAGRLMVYPHDGYWA
                     CMDTFKEKQDLEDVFGRGSAPWAVWNHQHEIKK"
     gene            complement(944..>1241)
                     /locus_tag="VIJ87_17610"
     CDS             complement(944..>1241)
                     /locus_tag="VIJ87_17610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446244.1"
                     /translation="IGREDFLEFLEAFFDWRTKVGKESISKGFHNYCSVPRAVQESIR
                     AALGFFGSRCIGTQHKPVKFDPLRLLNHPQQCAATADLDVVAVCAQAQDTLHTI"
BASE COUNT          311 a          282 c          346 g          302 t
ORIGIN      
        1 gctggcggat caattgcgcg cccaacaata tcgccatttt cgcggcgaaa cctggctgga
       61 ggaaaagatc aagagtcgca actgagctgc cgcttgtttc aaaggaactc tatgcctcaa
      121 aaaccggaga agagactgtg aaagtggttt tattttgcgg cggtttcggc atgcgtatgc
      181 gcgaatactc cgaagctttg ccaaagccaa tggtgccgat tgggtatcgt cccatccttt
      241 ggcatataat gaagtattac gcccactacg gacataaaga ttttattttg tgtttaggtt
      301 acaaggctga cgttataaaa aagtacttcc tcgaatacga cgagtgtgtg tcaaatgact
      361 ttgtcctttc cagcggaggc aagaatgttg aattgctgag tagcgacatc gatgactgga
      421 acatcacttt tgtggacaca gggcttacct cgaacgttgg tcagcgtctg aaagctgtcc
      481 gaaggcagct tgaaggagag gagatgttcc ttgccaacta caccgatggt ctttcggacg
      541 taccgcttcc tgcggtcatt gaatctttca aggatagcga caatgtcgcc tgctttgtgg
      601 gtgtgaagcc gcgggctagc ttccatctta tcacgatgga gtcaggtggt gtcgtcacga
      661 gtatcgagca catcgctaaa tcaggaatgc ggatgaacgg agggttcatg gtgttgcggc
      721 ctgaaatttt cagttacata aaggatagcg aggaactcgt agaagaaccg ttccggcgac
      781 tcattggcgc tggccggctg atggtttatc cacatgacgg ctactgggcc tgcatggata
      841 ctttcaaaga aaagcaggac cttgaagacg tcttcggccg aggcagtgct ccttgggcag
      901 tgtggaatca tcagcacgaa atcaagaaat gatttcgtgc aatctaaatg gtgtgaagcg
      961 tgtcctgtgc ctgggcgcac acagcgacga catcgagatc ggctgtggcg gcacactgct
     1021 gcggatgatt gagcagtcgg agaggatcga attttactgg cttgtgctgt gttccaatgc
     1081 aacgcgagcc aaagaagcca agcgcagcgc gaatgctttc ctgaacggcg cgcggaacag
     1141 aacagtagtt gtgaaatccc ttcgagatgg attccttccc taccttggtc cgccagtcaa
     1201 agaatgcttc gaggaactca agaaagtctt cacgcccgat g
//
LOCUS       DATCGC010001844         1193 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_328129, whole genome shotgun sequence.
ACCESSION   DATCGC010001844 DATCGC010000000
VERSION     DATCGC010001844.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1193)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1193)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1193
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_328129"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..675
                     /locus_tag="VIJ87_17615"
     CDS             <1..675
                     /locus_tag="VIJ87_17615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446245.1"
                     /translation="PASAGIANLGRPDPNWGNISRYESSGNSYYDGMVVSFNQRLRSW
                     VSTRISYTLSKTIDDAGNFFFSNVQNNANIRDDRGLSDNDQRHRLVVSGSLEAPARMN
                     VVLRGFQLGYIFTYGSRLPFNVLLGSDRNFDTNNNDRPLGVGRNTGRGFDFASLDLRL
                     SRKFRLGESAEVQLIGEGFNMLNRSNLSVPNNTFGPGVTPLPTFRQATAAFDSRQFQF
                     GVKLTF"
     gene            833..1174
                     /locus_tag="VIJ87_17620"
     CDS             833..1174
                     /locus_tag="VIJ87_17620"
                     /inference="COORDINATES: protein motif:HMM:NF023036.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-binding protein"
                     /protein_id="HEY5446246.1"
                     /translation="MHTHKAILICVVALLLVVACSKKLAHKDSEPEGPAAAVQTKTYE
                     AVGTVKAIDLKLPSIEINHEDIKGLMPAMQMQFHVKDKSLLEGIAAEDRITFTIENGV
                     GGLRIIAIHKM"
BASE COUNT          295 a          282 c          312 g          304 t
ORIGIN      
        1 cctgcaagcg caggcattgc caacctcgga agaccggatc cgaactgggg caacatctcg
       61 cgctacgaaa gttccgggaa ttcctactat gacggcatgg tagtgtcgtt caaccaacga
      121 ttgcgatcgt gggtgagcac gcggatttct tatacgcttt ctaagacaat cgatgatgcc
      181 ggaaacttct ttttctcgaa tgtccagaac aacgcaaaca ttcgcgacga tcgcggattg
      241 tctgacaacg atcagcggca tcgattggtt gttagtggtt ctctggaggc gcccgctcgc
      301 atgaatgtgg tgctacgcgg tttccaactg ggttacatct ttacttatgg gtcgagactc
      361 ccattcaatg ttttgctcgg aagcgatcgc aactttgaca ctaacaacaa tgatcggccg
      421 ttaggtgtgg gaagaaatac cggacgcggc tttgactttg cttcgttgga tttgcgtctg
      481 agtcggaagt ttcgactagg cgagagcgcg gaggtgcagt tgattgggga aggtttcaat
      541 atgctgaacc gctcgaacct gagtgtcccg aataatactt ttggcccggg agtcacaccg
      601 ttgccaacat tccggcaagc gacagcggcc tttgattcgc ggcagtttca gtttggtgtg
      661 aagctgacgt tttagaaagc tgacgtgttc ggaaactgct agtgatacag tcggtaccac
      721 aacgcgatag cgtgtggctt gttctagttc tttcttctct gagccccacg ctaccgcgtt
      781 gtggtactga ctgtattatt acttggccta cttacgcaca ttcatgaata acatgcacac
      841 tcataaagca attctcatct gcgtcgtcgc tctcttgctc gttgtcgcct gttcaaaaaa
      901 actcgcacac aaagactccg agccggaagg tcctgctgcc gctgttcaga caaaaaccta
      961 tgaagctgtc ggaacagtta aagcgattga cttgaagctg ccgtcgatag aaatcaacca
     1021 tgaagacatc aagggcctga tgccagccat gcaaatgcag tttcatgtaa aagacaaaag
     1081 tttactggaa gggatcgcgg cggaggatcg gattacgttc acgatcgaga atggagttgg
     1141 tggcttgcgt attattgcga tccacaaaat gtgaacccta tgagcgaaag aaa
//
LOCUS       DATCGC010001845         1179 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_29389, whole genome shotgun sequence.
ACCESSION   DATCGC010001845 DATCGC010000000
VERSION     DATCGC010001845.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1179)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1179)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1179
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29389"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            350..592
                     /locus_tag="VIJ87_17625"
     CDS             350..592
                     /locus_tag="VIJ87_17625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446247.1"
                     /translation="MNNNLIFRRLIQLGALFLIGDGVMGLLKPRWHSLLWHFGPELAR
                     AATDELVEHPKAARAVHFAEAAIGVALASCQTPRTD"
     gene            complement(652..1047)
                     /locus_tag="VIJ87_17630"
     CDS             complement(652..1047)
                     /locus_tag="VIJ87_17630"
                     /inference="COORDINATES: protein motif:HMM:NF037639.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SpaA isopeptide-forming pilin-related protein"
                     /protein_id="HEY5446248.1"
                     /translation="MSKVAILSLALLGLIPCLALAQTPPIPAVDGSAGLEGTISVTPI
                     QGGPTRKGEPDSKPLANITFEVKQNGQVTKSFQTDDRGQFHVELKPGHYTIARKDRNG
                     VVGFYGPFEAEVAQGKVTKVEWKCDSGIR"
BASE COUNT          269 a          331 c          301 g          278 t
ORIGIN      
        1 aacggttggt gttgacggac gaagatctga ggaaacactg agagtggtct ccaggagttt
       61 gcgtattagc tcccatcact ttaaggaatc ggcctagacc cggagcgatt acgaggcaag
      121 ttagccgaca ttaatgaagc atatcatatt attttttctc ttcgttgtcc tcttattcca
      181 aagcggatgt gccaacaatc cgagtatgga ggaacagatg cagcagcaac aacaggcgaa
      241 ccagaacatg aaaaatagcg ccgcattcgc gcgcgatctt cagcagtgac cggtcacgcg
      301 ggagatctga accgtttgaa aattcctccg acacactcga tagaatttga tgaacaacaa
      361 tctgatattc cggcgcttga ttcagctggg cgcgctcttt ctcatcggtg acggcgtaat
      421 gggactattg aagccgcgct ggcactctct gctctggcat tttggtccgg aactggctcg
      481 cgcggccact gatgaactcg tagagcatcc gaaggccgct cgcgcagtcc attttgcgga
      541 ggccgcgatc ggcgtggcgc tcgcttcctg tcaaacgcct cggaccgact agagctccgt
      601 tctacacagc tggctgaacg atcaacgcgc gctgatcatc cgattccgcc gtcatctaat
      661 accactgtca cacttccatt cgactttcgt caccttaccc tgggccacct ccgcctcgaa
      721 gggcccgtag aaaccaacga ctccgttccg atctttcctc gcaatcgtgt agtgacccgg
      781 ttttagttca acatgaaact ggccccgatc atcggtttga aacgacttgg ttacctggcc
      841 gttctgcttt acttcaaacg tgatattcgc caatggcttc gagtcaggtt cgccttttct
      901 cgttggccca ccctgaatgg gagtcactga gattgtccct tcgagtccgg cggaaccatc
      961 cacagcaggg atcgggggtg tttgggctaa ggcgaggcag ggtatcaggc caagcagtgc
     1021 tagagataga attgcaacct tactcatgtg gcgaagtctg aacaaacgtg ccctagccgg
     1081 gagccttgga atgtcttact ttcgcacgac agtggccaaa acgccaagtt ctaaaattcc
     1141 atggccctct ccggcctgtc cccccggagc gcgaaaatc
//
LOCUS       DATCGC010001846         1640 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_492047, whole genome shotgun sequence.
ACCESSION   DATCGC010001846 DATCGC010000000
VERSION     DATCGC010001846.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1640
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_492047"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(489..1556)
                     /locus_tag="VIJ87_17635"
     CDS             complement(489..1556)
                     /locus_tag="VIJ87_17635"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY5446249.1"
                     /translation="MTKNLARAVLLTITTVTPLFAQVQTDVPPVVANAKPVTIERIKI
                     HGAALEGNLEKNAVDRDVFVFLPPSYAKDKRRRYPVVYALHGYSIGAEQWTKEIHVPQ
                     TIEGAFALGANEMIVVVPDSKTLHNGSMYSSSATVGDFENYVARDLVAYVDQHYRTIP
                     NRMSRGLVGHSMGGYGATRIGMKHSDVFGSLYIMSPCCLSPRISLPQNSDLAKTLEAV
                     KTPEESAKLSFGARATLASAAAWSPNPKNPPLYLDLPTRDGETQPGVLARWAANAPLA
                     FVDQYIPSLRQYRGIALDVGDQDGLRGDTAKLHDVLDRYGISNSFEQYQGTHTSKVAD
                     RFQNHVLKFFSEHLCFEKQCR"
BASE COUNT          395 a          406 c          424 g          415 t
ORIGIN      
        1 gaggctctat cggtaccgac ataactcgac agccggattg cagcagttga ttgataagta
       61 taaggcgccg tgagtgtccg atatgcttta gcttgtcgtg attcgctaag gtcgtctctc
      121 aagctaatca gcgacaagct aaagaggctc ttgcaaaaat tccacaaacg gcagtttgtg
      181 gatacttcaa gtccagccta ttagggcacg caaacccaat ggcgaacgct gtcccagagc
      241 ctacactgtc ccgcagaagg ttggacctga acaaatccac aaactgccgt ttgtggattc
      301 aattcctttc cgcgcgactg ttgaataggt tggtcttgaa tcatctccaa actgccgttt
      361 ggaggattgt tcttcctttc gagtggttcc tgacttttgc aagaggctct tcagcttgtc
      421 gtgacttatt gagcgaggtt ttgactgtca agtcacgaca agacagacgc atatcggaca
      481 ttggttcact aacgacactg cttctcaaaa cagagatgct cgctgaagaa cttcagcaca
      541 tgattttgaa aacgatcagc aaccttgctc gtgtgagttc cctggtactg ttcaaagctg
      601 ttagagattc cgtacctatc aagcacgtca tgcagtttgg ctgtatcgcc tcttagacca
      661 tcctggtcac caacatcgag agcgattccc cgatactgac gaagactagg tatgtactga
      721 tccacaaaag ccagcggtgc attggccgcc caccttgcca ggacgcccgg ttgcgtctca
      781 ccgtccctgg taggtagatc cagatacaac ggaggattct tcgggttggg tgaccaagct
      841 gccgcgctag cgagtgtggc gcgagcacca aaagatagct tggctgattc ctccggtgtc
      901 tttaccgcct cgagagtctt tgctagatct gagttctgag gtaacgaaat cctcggtgac
      961 aaacaacatg gactcatgat gtacaagctg ccgaacacgt ctgagtgctt catcccgata
     1021 cgcgtcgcac catatcctcc catcgagtga ccaaccagac cacggctcat tcgatttgga
     1081 atcgtgcgat agtgctggtc gacataagca actaaatctc tagcgacgta gttttcaaaa
     1141 tctccaactg tcgccgaact cgaatacatc gagccgttgt gtagcgtctt tgaatcaggg
     1201 acgacaacga tcatctcgtt agcgccgaga gcaaaagcac cttcgattgt ttggggaacg
     1261 tggatctctt tggtccattg ttcggcgccg atcgagtagc cgtgaagtgc gtagacaacc
     1321 gggtatcgtc gacgtttgtc ttttgcgtag ctgggaggaa gaaagacgaa cacgtcgcga
     1381 tcgacggcgt tcttttccag gttgccctcg agtgcggcgc cgtgaatttt gattcgttca
     1441 atagttacgg gtttcgcgtt ggcgacgacg ggagggacgt cagtttgaac ttgagcgaag
     1501 agcggtgtaa cggtggtgat ggttagcagt actgcgcgag ccagattctt agtcatttca
     1561 attttatcca ggtagcggtt caggtggagt gcaagtcgtc gctcgccttc aagtaaggcg
     1621 taataccaaa actaaaaacg
//
LOCUS       DATCGC010001847         1211 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_328153, whole genome shotgun sequence.
ACCESSION   DATCGC010001847 DATCGC010000000
VERSION     DATCGC010001847.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1211)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1211)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1211
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_328153"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(139..>1211)
                     /locus_tag="VIJ87_17640"
     CDS             complement(139..>1211)
                     /locus_tag="VIJ87_17640"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY5446250.1"
                     /translation="PDFAAPEDIKRKAMEAIANDVNQYAITWGSKDFRDAIARKTKWH
                     LGLDVDPETEITVTCGSTEGMIAAMMATVDPGEEVVVFEPFYENYGPDAILSDAKPRY
                     VSLRAPDWTFDRDELRAAFSDKTKAIIVCNPNNPTGKVFTRDEMEYIAQLCQEFDALC
                     FTDEIYEHILYPREGADIQHISMAQIDGMRDRTVVVNSMSKTYSVTGWRVGYCIAPPE
                     ITSGIRKVHDFLTVGAAHPLQAAGAYALSLPTEYYQKLEGEYRARRDLLLPVLQENGF
                     KTFVPDGAYYIMTDISEFGFPNDVEFTKHLIREIGVACVPGSSFYSVSQNGKQQVRFC
                     FCKKDETLNRAAERLSKLHARV"
BASE COUNT          282 a          337 c          296 g          296 t
ORIGIN      
        1 cggtaccact acgcggtagc gtgtggctcg gctcatcgtt ccttttgttg ttgtcgcgcg
       61 gagagccaca cgctaccgcg tagtggtact gactccatgg gattccacag agaagtacgt
      121 tgcggatcac tcgcgtgatc agactcgggc atggagcttc gacaatcttt ctgccgcgcg
      181 attcaaagtc tcgtccttct tacaaaaaca gaatcgcact tgttgctttc cattttgtga
      241 gacgctgtag aagctcgaac ccggaacaca cgcaacaccg atctcccgga tcaaatgctt
      301 tgtaaactca acgtcatttg gaaagccaaa ctcggaaatg tcagtcatga tgtagtaagc
      361 gccatcaggt acgaacgttt taaagccgtt ttcctgaagc accggcaaca acaaatctct
      421 tcttgctcga tactcgcctt caagcttctg gtaatactct gtgggcagcg acaacgcata
      481 tgcgcctgcc gcctgtaacg gatgcgccgc accgaccgtc aaaaaatcat gcactttgcg
      541 aatgccactc gtaatctcag gcggggcgat gcagtaacca acgcgccatc cagtcacgga
      601 gtaagtcttc gacattgagt taacgaccac agtccgatca cgcataccgt cgatctgggc
      661 catcgagatg tgctggatgt ccgcgccttc acgcggatac agaatgtgtt cgtaaatctc
      721 gtcagtgaag cacagcgcgt caaactcctg gcaaagctgg gcgatgtatt ccatttcgtc
      781 gcgggtgaag actttcccgg tagggttatt cggattgcag actattattg ctttggtctt
      841 gtcactaaac gcagctcgca attcgtcgcg atcaaaagtc caatcaggag cgcgcaggga
      901 aacatagcgc ggcttcgcat ctgacaagat cgcatctggt ccgtagttct cgtaaaacgg
      961 ctcgaaaaca acaacttcct cgcccggatc gacggtcgcc atcatcgccg caatcattcc
     1021 ttcggtagat ccgcaggtaa ccgtgatttc tgtctcggga tccacgtcta agccaaggtg
     1081 ccatttggtt ttccgcgcaa ttgcatctcg gaagtccttt gacccccacg tgattgcata
     1141 ctgattaacg tcgttcgcga tcgcttccat cgccttgcgc ttgatgtctt caggtgcagc
     1201 aaagtcggga a
//
LOCUS       DATCGC010001848         1631 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_59938, whole genome shotgun sequence.
ACCESSION   DATCGC010001848 DATCGC010000000
VERSION     DATCGC010001848.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1631)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1631)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1631
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_59938"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..323)
                     /locus_tag="VIJ87_17645"
     CDS             complement(<1..323)
                     /locus_tag="VIJ87_17645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446251.1"
                     /translation="MLVVILFADCNATVLYVRFTSNEIVIATDSKRTATTGQTVCVCK
                     ITQIGDTFVASAGLAEFGAFDPREFAREAIKTSSTLVEARTRFEQLISEPLIDVLKKV
                     KSRNR"
     gene            1008..1250
                     /locus_tag="VIJ87_17650"
     CDS             1008..1250
                     /locus_tag="VIJ87_17650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446252.1"
                     /translation="MILTIGTRDASVMIGNLGGLVSIRDGGGITTTGSSTGTVPGGIA
                     TGIPGAIATGTCATTQTGLVAVDKAVTLVVAPRFSS"
     gene            complement(1349..1425)
                     /locus_tag="VIJ87_17655"
     tRNA            complement(1349..1425)
                     /locus_tag="VIJ87_17655"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1389..1391),aa:Arg,seq:cct)
BASE COUNT          433 a          379 c          417 g          402 t
ORIGIN      
        1 tcacgattcc tgcttttgac tttcttgagc acgtcaatga gtggctcaga aataagttgt
       61 tcgaatcttg ttcgtgcttc aacaagagta ctggatgtct tgatggcttc tcgagcaaac
      121 tctctgggat caaatgcgcc gaattccgcg agaccagccg atgcgacgaa cgtgtcgcca
      181 atttgagtaa tcttgcaaac acaaaccgtc tggcctgtcg tggcggttcg tttgctgtcc
      241 gttgcgataa ctatttcatt tgaagtaaat ctgacgtaga gaaccgttgc gttgcagtcg
      301 gcgaagagaa taacgacgag cactatcaac gtacatatgt ttcgtctgac tcgcatagac
      361 catatttggc taaacgctgt cgtctggtgt caacaagaat atcctttacc gcgagctgct
      421 gtctttgaag actagcttga gaagtcatgt ctatttcgtt tttcttaggc gtctaagtca
      481 gataaccgat taggatgtcg aacgacaaag gctttcaacc cacgcaccaa tacgagcacg
      541 cgagttcgca aatagtgcgg acagccccgg ttccaaccct tgtgaggctt tcctaaagta
      601 cactggcaac ccggcaagaa aattataata aataagctgc taaacagctg aaacggcccg
      661 aagctttgat gttctcattt cacgttaagg ccagttggac cgaacccatg ccctgaaagt
      721 aactcttaca aacaactggg cacggggatt gatattatct tcagtgccct gaaagcaggt
      781 ctcacgtcga acaacatctt aaatcgaaag cgaaggtaag cttatgaaga ttgtaacttt
      841 caggaacttt ttgatggttg gtgggctggc atttttggtc ctagtgagcg cttcgtccga
      901 ggctcgagct caaggcaggt cgaattggga caagaaatgc gctaagtttg tgaattgtca
      961 cgacgccagc gaaggtcgta tggatggacg aggaccacgc aggggaaatg attctgacaa
     1021 ttggaactcg agacgcttcc gtcatgatcg ggaatttagg aggtttagtg agcatcaggg
     1081 acggcggagg catcacaacg accgggagtt cgaccggaac ggttcctggc gggatcgcaa
     1141 cagggattcc tggcgcgatc gcaacaggga catgcgccac aacgcaaact ggactcgtcg
     1201 cggtcgataa agcggtcaca ctagtagttg caccgcgttt tagctcctga tcgattgagg
     1261 ccgcctcaag attgagatgt gatcatgcgg tgcaactacg aaggtgtgtg gatgctcaga
     1321 ttgagcacta cgatattcca attgataatg gtgcccccgg cgcgattcca acgcgcgacc
     1381 ttccgcttag gaggcggacg ctctatgcag ctgagctacg ggagcacaaa gagaagtgaa
     1441 tcgtaaatcg tgaatggtta atcgtaaagg gatggagcga ctttgcattt aggccttagg
     1501 tctttacaag aacacgataa agaccaaagg ccaccgtttt tactcctgat atttgatcag
     1561 tgatctaaca tcataccctg ccaacttttc ccggcctggt aagaactcga gttcaactac
     1621 aaacaccaat c
//
LOCUS       DATCGC010001849         1387 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_492066, whole genome shotgun sequence.
ACCESSION   DATCGC010001849 DATCGC010000000
VERSION     DATCGC010001849.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1387)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1387)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1387
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_492066"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            145..1188
                     /gene="ruvB"
                     /locus_tag="VIJ87_17660"
     CDS             145..1188
                     /gene="ruvB"
                     /locus_tag="VIJ87_17660"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:NF000868.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HEY5446253.1"
                     /translation="MAPESISARMKDASPNDDERQLDLTLRPTRIEEYIGQRQVKENL
                     RIYMKAALRRREALDHVLLTGPPGLGKTTLANIIANEMGAELRSTAGPAIEKAGDIAA
                     LLTNLQEGDVLFIDEIHRLLPALEEKLYPAMEDYQLDLLIGQGAAARSIKLELPKFTL
                     IGATTRAGLITAPLRGRFGIVFHLDFYPHEDLEIICKRSAEILGVEIDEDGAREIARR
                     SRGTPRIVNRLLRRVRDYAEVDYDGKITKDVASDALNRMEVDTYGLDEMDRKLLLTII
                     EKFGGGPVGLGTISASIHEEKDSIEEIIEPYLIQIGFLDRTPRGRLATPLAYQHFGLN
                     LPNISRPSLFDPR"
BASE COUNT          349 a          381 c          332 g          325 t
ORIGIN      
        1 atgtccgata tgctttagct tgtcgtatga tcaatgagta gcttttagat caaagaatat
       61 cgcgcgtttg acgagacaag ctaaagttct ccggccattc tgaggtagag tcacgacaag
      121 ctaaagcata tcggatatag agccatggct cctgaatcaa tatcagctcg aatgaaggac
      181 gcgtcgccaa acgacgacga acgtcaactt gatctgactc ttcgtcccac tcgtatcgag
      241 gagtacatcg gtcagcgtca ggtcaaagag aacctccgca tctacatgaa agccgcgctt
      301 cgcagacgtg aggcactcga ccacgtcctg ctaaccggac cgcccgggct gggcaaaact
      361 acgctcgcga acatcatcgc caacgaaatg ggcgccgaac ttcgttcaac tgccggaccc
      421 gcgattgaga aagctggcga tatcgccgcg ctacttacaa acctacagga aggcgacgtc
      481 ctttttatcg acgagatcca tcgcctgctt cccgcattgg aagagaagct ttatccagcg
      541 atggaggact accaactcga cttgctgatc ggccagggag cagcggcacg ttcaatcaaa
      601 ctagaattac ctaagttcac cctgattggc gccactactc gtgccggctt aatcaccgca
      661 ccgttgaggg gtcgtttcgg aatcgtcttt catctcgact tctacccgca cgaagatctc
      721 gaaatcatct gtaaacgttc tgcagagatt ctcggtgttg aaatcgacga agatggcgcg
      781 cgtgaaatcg cacgaagatc tcgagggaca cctcgcatcg tcaatcgact actccgtcgc
      841 gtccgcgatt atgctgaagt cgactacgat ggaaagatca cgaaggatgt cgcaagcgat
      901 gcgttgaatc gaatggaagt cgacacctac ggactcgacg aaatggatcg caaactactc
      961 ttgaccatca tagaaaagtt tggcggcggt cctgttggac tgggaaccat ctcggcatct
     1021 attcatgaag aaaaagattc catcgaagaa atcattgaac cttatctgat ccaaattggc
     1081 tttttggatc gcactccgag agggcgtctg gcaacacctt tggcgtacca gcatttcggt
     1141 ctcaatctac ctaacatctc ccgccccagt ctcttcgacc ctcgttgaga taagctttag
     1201 cgcctaacaa aatgaagcgc cttgcatcat tctcgcggca ctcgttcgga gttcgaaatc
     1261 gatctccctg gggctcgatg attcagcaca cgcttcacca gtttcatgag aatgatctct
     1321 tcacttcggc ggccgcgatg agctacttcg gcttgatggc attgttcccg accctgttgc
     1381 tcctttt
//
LOCUS       DATCGC010001850         1472 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_225674, whole genome shotgun sequence.
ACCESSION   DATCGC010001850 DATCGC010000000
VERSION     DATCGC010001850.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1472)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1472)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1472
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_225674"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..704
                     /gene="waaF"
                     /locus_tag="VIJ87_17665"
     CDS             <1..704
                     /gene="waaF"
                     /locus_tag="VIJ87_17665"
                     /inference="COORDINATES: protein motif:HMM:TIGR02195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008920 - lipopolysaccharide
                     heptosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HEY5446254.1"
                     /translation="SERHEVFYYLYLITALEQLLFQSSTICEAEPDATLHISSERKLE
                     AAKFLATFGVNANQSVVAICPGSINSRAKRWPAESYAALADRLLEDRKQVVIVGSKDE
                     LDVTEAVVSKMRQKPVVLTGKTTIDQLTALLGLADLVVTNDTGPAHIAAALGRPTLVI
                     FGPTNPLTTRPFSGQAEILRHPPDCAPCMLRDCPIDHRCMTAISVDEVVEHSRAILKR
                     SSFAKTVRSLCDSVA"
     gene            715..1296
                     /locus_tag="VIJ87_17670"
     CDS             715..1296
                     /locus_tag="VIJ87_17670"
                     /inference="COORDINATES: protein motif:HMM:TIGR01662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEY5446255.1"
                     /translation="MTRPAVFIDRDGTISEEVGYVNHPSRFRVFPYSAEAIKTLNDNG
                     WLAILVTNQAGVARGYFSEDVIVTVHQQLSQTLETDHARLDAIYYCAHHPTVGEPPYR
                     LDCDCRKPKAGLITRASVDFDIDLTKSWMIGDRYSDIELAHNAEIHSAFVLSGYGRGE
                     WEYQRSGWTLQPDLVCENLLEAVQSIVSSDQKI"
BASE COUNT          378 a          383 c          359 g          352 t
ORIGIN      
        1 gttcagaaag acacgaagtt ttctattatc tttatctgat taccgctctc gaacaactgc
       61 tatttcaatc gagtacaatt tgcgaagccg aacctgatgc aactctacac atctcttcag
      121 aacgaaagtt agaagcagcc aagttcctcg caacctttgg cgtgaatgcc aaccaatccg
      181 tcgtggcaat ctgtccgggt tcgataaaca gtcgcgctaa acgatggcca gcggaatcgt
      241 acgctgcgtt ggcagatcga ttactagagg atcgcaagca ggttgttatc gttgggtcta
      301 aagatgagtt agacgtgacc gaagccgtcg taagtaaaat gcgtcagaag ccggtcgtat
      361 taaccggcaa gacaacaatc gatcaactaa ctgccctact cggtttggca gacctcgtag
      421 taaccaacga caccggacca gctcacattg ccgctgcgct cgggcgaccc acgctcgtga
      481 tctttgggcc aactaatccc ctaacaacca gaccgttctc gggacaggcg gagattctgc
      541 gtcatccacc tgattgcgca ccctgcatgc ttcgcgactg cccgatagat catcgttgca
      601 tgaccgccat ttcagtcgat gaagtcgtcg agcattcccg cgcgatactc aaacgcagta
      661 gttttgcaaa aacagttagg agcctctgcg attcagtcgc ttaacagaaa accaatgacc
      721 aggcccgcag tattcatcga ccgcgacggt acgatttctg aggaagtcgg ctacgtaaac
      781 cacccgtcac gttttcgagt gttcccctat tccgcggaag cgattaagac tctgaatgac
      841 aatggctggc tcgcaatcct ggtcaccaat caagcaggag ttgcgcgcgg ttatttttct
      901 gaagacgtga tcgtcacggt tcaccaacaa ttgtctcaga cgctcgaaac cgatcacgct
      961 cgccttgatg cgatctacta ttgtgcacat catccaacag ttggtgaacc accgtatcgc
     1021 ctcgattgcg actgtaggaa accgaaagcc ggtttaataa ctcgtgcgtc agtcgatttc
     1081 gatatcgacc tcacaaagag ctggatgatt ggtgatcgct acagcgacat cgaactggcg
     1141 cataacgcag agatccattc ggcatttgtt ctgagtggat atggacgcgg cgaatgggaa
     1201 tatcaacgtt cgggttggac gctgcaacca gatctggttt gtgagaatct attggaggcc
     1261 gtacagtcga tcgtgagttc agaccagaaa atatgacagg cgagctgact cctataaggg
     1321 accgtttact agaaatcgtt aggacctttc cgaaacgaaa gatcgtcatc atcggagact
     1381 ccattgccga tcggtttttg tatggctcga tcagccgcgt ttctagggag gctccagtct
     1441 ttattcttcg tcacgaacag acggaaactg tg
//
LOCUS       DATCGC010001851         1111 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_158017, whole genome shotgun sequence.
ACCESSION   DATCGC010001851 DATCGC010000000
VERSION     DATCGC010001851.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1111)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1111)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1111
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158017"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(42..>1111)
                     /locus_tag="VIJ87_17675"
     CDS             complement(42..>1111)
                     /locus_tag="VIJ87_17675"
                     /inference="COORDINATES: protein motif:HMM:NF025465.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PmoA family protein"
                     /protein_id="HEY5446256.1"
                     /translation="ETITMSTTVTKLTLATLLVIVSATSASVAQQRGITVVKNEAAQR
                     VDVLIDGQPFTSYIWSDKLKVPVLYPLRTATGTIVTRGFPLEPRPGERVDHPHHIGLW
                     FNYGSVNGVDFWNNSVALSPEQQKKMGMVAHRRVVKSTGGKDRGELVVEMDWIMPDGQ
                     PILHETTTFIFRSGLNSRTVDRISELTALNQRVVFQDNKEGLIGMRVRRELEQPSNEP
                     LVFTDSSGRPTEVKVLDNTGVSGLYRSSEAKTGDAVWGTRARWTMLSGKVNDESITLA
                     IFDHPKNVGYPTYWHARGYGLFAANPLGQEVFSNGKEKLNFTLEPKQSVTFRYRLLIQ
                     SGPVTPESIEKQSQSFATELK"
BASE COUNT          250 a          289 c          298 g          274 t
ORIGIN      
        1 tctcatttaa cttcgccaaa cgccgaggtt ggttgcagac atcatttcaa ctcagtcgca
       61 aaactctgag attgcttttc aatcgattca ggggtgactg ggcctgactg gatcagcaga
      121 cggtaacgaa aagtaactga ctgttttggt tctaacgtga agttgagttt ttccttaccg
      181 ttgctaaaaa cttcctgacc aagcggatta gcagcaaaca atccataccc gcgcgcgtgc
      241 cagtaagtgg gatagccaac gttcttcgga tgatcgaaga ttgcgagcgt gatcgactcg
      301 tcattaactt tgcccgacaa catcgtccaa cgggcgcgtg tcccccaaac tgcgtcgcca
      361 gtcttcgctt cgctacttcg atagagcccg ctcaccccgg tgttgtccaa aaccttgacc
      421 tcagtgggcc ggcccgatga atcggtaaac acgagcggtt cgttggaggg ttgctcaagt
      481 tcgcggcgca cacgcatccc gatcaagcct tctttgttgt cttgaaagac aactcgctgg
      541 ttcaacgcgg tcaactcgct gatgcgatcc acggtgcgcg agtttagacc tgagcggaat
      601 ataaacgtcg tggtctcatg caagataggt tgaccatcgg gcatgatcca atccatttcg
      661 acgacgagtt cacctcgatc tttgccgccg gtggatttga cgacacgccg gtgcgcaacc
      721 atccccatct tcttttgttg ttcaggcgag agagcgacgg agttgttcca gaagtcgact
      781 ccgttaacgc tgccatagtt gaaccacaaa ccaatgtgat gcggatgatc tacgcgttcg
      841 ccaggacgtg gctcaagtgg aaatcctcgg gtgacgatcg ttcccgtggc agtgcgcagt
      901 ggatatagca ctggcacttt gagtttgtcg gaccagatgt acgaggtgaa cggctgacca
      961 tctatcagca cgtcgacgcg ttgtgcggct tcgtttttga cgacggtgat gccacgttgc
     1021 tgcgcgacgg acgcacttgt agcggagacg ataacgagaa gagtggccaa cgtaagtttt
     1081 gtaacagtcg tactcattgt gatggtctcg t
//
LOCUS       DATCGC010001852         1055 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_126758, whole genome shotgun sequence.
ACCESSION   DATCGC010001852 DATCGC010000000
VERSION     DATCGC010001852.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1055)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1055)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1055
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126758"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..571)
                     /locus_tag="VIJ87_17680"
     CDS             complement(<1..571)
                     /locus_tag="VIJ87_17680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446257.1"
                     /translation="MPQNQETKRLQEARNDKTPWRKWGPYLSERQWGTVREDYSADGN
                     AWDYFTHDQARSRAYHWGEDGLAGISDDKQLLCFCLALWNGKDPILKERAFGLTNSEA
                     NHGEDVKEYYFYVDSTPTHSYMKYLYKYPQAEYPYLNLIETNRHRNREDFEYELLDTG
                     VFNEDRYFDVFVEYAKQDTEDILIRISASN"
BASE COUNT          230 a          285 c          269 g          271 t
ORIGIN      
        1 gattactcgc gctgattcga atgaggatgt cttccgtgtc ctgcttggca tattccacga
       61 aaacgtcaaa gtaacgatct tcgttaaaga cacctgtatc aaggagctcg tactcaaagt
      121 cttcgcggtt gcgatgcctg ttggtctcga tcaaattgag gtatggatat tcggcttgtg
      181 gatacttgta caggtatttc atgtacgagt gcgttggagt actgtccacg tagaagtagt
      241 actctttgac gtcctcgcca tggttggcct cgctattagt cagaccaaaa gcgcgttcct
      301 tgaggatcgg atccttgccg ttccaaagag ccagacagaa acacagaagc tgcttgtcat
      361 cactgatgcc ggccaggcca tcctcgcccc agtgatacgc gcgggatcgc gcctggtcat
      421 gcgtgaagta gtcccaggcg tttccatctg cgctgtagtc ctcgcgaact gtaccccact
      481 gccgctcgct gaggtagggt ccccactttc tccacggggt tttgtcgttg cgggcttctt
      541 gcagtctttt ggtttcctga ttttgtggca tttgacacct agtttcctct caggccggct
      601 gactatggac gctggccaac tattccagtt agagtgctta ttcgccagcc gtttcttcaa
      661 ctcttcgagg aaaccacatg gcatcaattc gctgctgtga cccaacgcaa gatcgtcgga
      721 gccaacgttc cctttcattt ggtcatttag gttgcgggtt tgaatcgact gaagccaatt
      781 attgtcgact catggggcac cacgaccccg catagcgcta cactcagctt ttcagcggcg
      841 cgggtcatct aactgtcgaa tcagtctcac tgatcacaag agcacgctcc ggggctccca
      901 gagagtggac ccacacacta cacggctctt cgcagattga aaactgtcaa tagtgacaga
      961 accaaggatg agcctgccgc ctgcggtcga ctagccggcc gagatagatt tcagaagcag
     1021 cgatacgcaa gatggcattg ccatgaaaga tgcag
//
LOCUS       DATCGC010001853         1259 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_361488, whole genome shotgun sequence.
ACCESSION   DATCGC010001853 DATCGC010000000
VERSION     DATCGC010001853.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1259)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1259)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1259
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_361488"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..319)
                     /locus_tag="VIJ87_17685"
     CDS             complement(<1..319)
                     /locus_tag="VIJ87_17685"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEY5446258.1"
                     /translation="MPSLINKPTVIQAAGTKPKLIEEFVGQVNTASKDVSIARMKSPT
                     GWVEPGQRPEFDEYTIVLSGMLRVEGENETIDVRAGQAVVVRGGEWVRYSTPESDGAE
                     YVAI"
     gene            complement(319..735)
                     /locus_tag="VIJ87_17690"
     CDS             complement(319..735)
                     /locus_tag="VIJ87_17690"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HEY5446259.1"
                     /translation="MQNNASVNERRRSPRLKAGWDAELTTGLSILDTEAPAEDYSLVF
                     WGRTLDMSAGGLALVLPSTLIDERYCGDESRLQLSLHLPTGSVNLEVSAVRCEPLQAE
                     DTAMGYLIGAQILSLDDNRDAYDGYVRSISGLKLDN"
BASE COUNT          305 a          342 c          286 g          326 t
ORIGIN      
        1 aaatcgccac gtactcagca ccgtcagact caggcgtgct gtaccgcacc cactcaccgc
       61 cacgcacaac gaccgcctgt cccgcccgca catcaatcgt ctcattctcg ccttcgacgc
      121 gtaacatgcc gctcagcacg atagtgtatt catcaaactc aggacgctga cctggttcaa
      181 cccaaccagt cggactcttc atccgcgcaa tactcacgtc tttcgacgcg gtatttacct
      241 ggcctacaaa ttcttcgatc agtttcggct ttgtaccggc agcctgaata acagttggct
      301 tgttgattag tgaaggcatt agttatcgag tttcaaacca gagatgctgc gaacgtaacc
      361 gtcatacgca tcacgattgt cgtctaagct gagaatctgg gctccaatca aatagcccat
      421 tgctgtgtct tcagcttgca atggttcaca gcgcacagca cttacttcga gattcacaga
      481 tccggttggc aaatgtaatg aaagctgtag tcgcgactcg tctccacaat atctttcatc
      541 gattagcgtc gatggaagaa ctaaggcaag ccctccggcg ctcatgtcca gggtgcgacc
      601 ccaaaacacc aacgagtaat cttcagccgg cgcttcggtg tcgagtatag agaggccggt
      661 agttaattct gcgtcccatc ctgccttcaa tcgcggcgag cgccggcgtt catttacgga
      721 agcattattc tgcacgctag tcagtcttag aacctgggag tggttaagac ttatcccggg
      781 ctttctccga tttgttttga tttgtagaga gcgaagccgc aaacgacctt ctgtcgtcgg
      841 ccagtagtag catgaaacga taaatttgta cattgagagc tagttacttt cccttgtgat
      901 tcttctttat gtagatcggt gcgttatgca atgagacggg cacgcctttc acggtcgatg
      961 gtcatttgaa tcgaaccttg tgctgactca caccggatcg tgatttcctc aattgaccaa
     1021 tgaaagatta aatgacatat gaccactgag actttgatac gccctccact acttcccagt
     1081 acacagactg aaggaagctt tggatgagta aagatttccc ttagcactta atcaaagatc
     1141 ctgaagtctg tggtactcgc tacctgagca atggatttac ccatgaggcc acgctggcta
     1201 gacgcacgta ccgctccacc ttgctgagtc gatttcgcgg taccagtgca taggtctag
//
LOCUS       DATCGC010001854         1192 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_459922, whole genome shotgun sequence.
ACCESSION   DATCGC010001854 DATCGC010000000
VERSION     DATCGC010001854.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1192
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_459922"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1192
                     /locus_tag="VIJ87_17695"
     CDS             <1..>1192
                     /locus_tag="VIJ87_17695"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY5446260.1"
                     /translation="KVQEAGSIVWNTGEAFHYGWGGSLEDHRFTFARDVDYCSGASLL
                     IRKALFDQLGGFDRRYAPAYYEDVDLCFSARAAGYRVVFQPASKIIHYEGVTAGRYVN
                     SGVKQFQVINRQKFYDKWQDVLKLKHFQNEKRNIPKAAHRIPEEAVIVFDDRIPTPDL
                     DAGSARMLLILKLLARHYRTVFVYQTKSPELRYEQALLNEGIETIDLIYYSRLLKLQS
                     FHTAIVSRPEIAQSVFSSLRRLAPKMKIIFDTVDAHYRRLELEYQVTGDPAALRSAKH
                     YRKIENKLVRESDLLWCTSPADEQSMIADVPGKPVAIVPTIHPLHERGAPFAQRNNLL
                     FIGNFSHRPNRDAVVFFVKEILPLIRHSLRDIKFDVVGSNAPSEFQQFASSEVRVHGY
                     VEDIT"
BASE COUNT          308 a          295 c          290 g          299 t
ORIGIN      
        1 gaaaggtgca agaggctgga tccatcgttt ggaatacagg ggaagctttt cactacgggt
       61 ggggaggttc acttgaggat catcgattca ctttcgctcg cgatgttgat tactgctccg
      121 gcgcatcgtt acttatcaga aaggcactgt ttgaccagct tggtggtttt gatcgtcgtt
      181 atgctccggc ttactacgaa gacgttgacc tctgctttag cgcgcgcgct gccggctaca
      241 gggtagtctt tcaacccgca tcgaaaatta ttcattatga aggcgtaact gcgggtcgct
      301 acgtgaatag cggcgtaaag cagtttcaag tgatcaatag acagaagttt tacgacaagt
      361 ggcaggatgt actaaaactc aagcactttc aaaatgagaa acgaaacatt ccaaaggccg
      421 cgcaccgaat accggaagag gcagtaattg ttttcgatga tcggattcca acacctgatc
      481 tcgacgcagg aagcgcgcga atgttgttga ttctcaaact cctcgcacgt cactatcgaa
      541 cggtatttgt ctatcaaacc aagagtccgg aactacgcta tgaacaggct ctcctgaacg
      601 aaggtatcga aacgatagac ctgatttact attcacgcct gcttaagctt cagagttttc
      661 acacagctat cgtcagccga ccggagattg ctcaatcagt cttcagttcc ttacgtcgcc
      721 tggctccaaa gatgaaaatt atctttgaca cagttgatgc tcactatcgc cggctggaac
      781 ttgagtatca ggtaacgggt gatcccgccg cactacgcag cgccaaacac tatcgcaaga
      841 ttgaaaacaa attagtccgc gagagcgatc tactgtggtg cacctcaccg gcagatgaac
      901 agtcgatgat tgctgacgtt cccggcaagc cagttgcaat tgttccgacg atccatccgc
      961 ttcacgaaag aggcgcgcct tttgctcagc gcaacaacct gctattcatc ggaaacttta
     1021 gtcacagacc caatcgggat gcggttgtgt tctttgtgaa agaaatcctt cccctgattc
     1081 ggcactcact tcgggatatc aagtttgatg tcgtcgggag caatgcacct tcggagtttc
     1141 agcagtttgc gtcaagcgaa gtccgagtcc acggttacgt tgaagacata ac
//
LOCUS       DATCGC010001855         1332 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_60028, whole genome shotgun sequence.
ACCESSION   DATCGC010001855 DATCGC010000000
VERSION     DATCGC010001855.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1332)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1332)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1332
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60028"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1209)
                     /gene="atpA"
                     /locus_tag="VIJ87_17700"
     CDS             complement(<1..1209)
                     /gene="atpA"
                     /locus_tag="VIJ87_17700"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016292873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEY5446261.1"
                     /translation="MEPIRASEINDIIRKQIENFDTGVTVTEVGTVIKIGDGIAEIHG
                     LEKVMAGELLEFPHNVRGLALNLEEDKVGAVLFGDFPAIREGDLVKRTARIMQVPVGE
                     ALVGRVVDVLGNPIDDGGPIITETYYPVERIAPGVVDRQPVKEPLQTGLKAIDAMVPI
                     GRGQRELIIGDRQTGKTAVAVDTIINQKGKDVICIYVAIGQKASTVAQVVKTLQDFGA
                     MDYTIVIKATASDPAAMQFLAPYSGAAMGEYFRDNGRHALTIYDDLSKQAAAYREISL
                     LLRRPPGREAYPGDVFYLHSRLLERAAKLSDLKGGGSLTSLPIIETQAGDISAYIPTN
                     VISITDGQIFLEADLFNSGFRPAINVGNSVSRVGGSAQIKAMKQVAGTLRLDLAQFRE
                     LQAFAQFGSDL"
BASE COUNT          307 a          368 c          334 g          323 t
ORIGIN      
        1 caggtctgaa ccgaactggg cgaacgcctg caactctcgg aactgggcca agtcgagccg
       61 caacgttccc gctacctgct tcattgcctt gatctgagct gaaccaccta cgcgcgaaac
      121 gctgttgccc acgttgatag cgggacgaaa accactgttg aagaggtcgg cctcaagaaa
      181 gatttggcca tcagtgatcg agatcacgtt cgttggaatg tatgcagaga tgtcgcccgc
      241 ctgagtttca atgatcggta gactggtgag cgaaccgcca cccttcaagt ctgagagttt
      301 cgcagcacgt tccaacaatc ttgagtgcag gtagaaaacg tcgcccggat atgcttcacg
      361 acccggcggt cgacgcagaa gcaatgagat ctcacgataa gctgcggcct gcttcgaaag
      421 atcgtcgtaa atggtcaagg cgtgtcggcc attgtcgcgg aagtattcgc ccatcgccgc
      481 tcctgagtat ggagccagga actgcatcgc agccggatca gacgcagtgg ccttgattac
      541 aatcgtgtaa tccattgcgc caaagtcttg taaggtcttt acgacctgtg cgacggttga
      601 tgccttctga ccaatcgcga cgtaaataca aataacgtct ttgccttttt ggttgatgat
      661 cgtgtcgact gcaacagcag tctttcccgt ttgacgatca ccaataatga gctcgcgctg
      721 tccacgcccg attggcacca tcgcgtcgat cgctttcaaa ccggtttgga gtggttcctt
      781 tacaggctgt cgatcaacta cgccgggagc aatgcgctcg actgggtagt aggtctctgt
      841 aatgattgga ccaccgtcgt cgattggatt accgagcaca tcaaccacac gaccgaccag
      901 ggcttcacca accggaacct gcataatgcg tgcggtgcgc ttgaccagat cgccttcgcg
      961 aatggctggg aaatctccga acaacacggc accgactttg tcctcttcaa ggttcaaggc
     1021 cagtccccgt acgttgtgtg gaaactcaag gagttcgccg gccatcacct tttcgagacc
     1081 atgaatttca gcgatgccgt caccgatttt gatcacggtt ccaacttcag taacagttac
     1141 accggtatcg aagttctcga tctgtttgcg tatgatgtcg ttaatttcgc tagcgcgtat
     1201 gggttccatg atctcctcta acttctcctg gtaactcagc ggtttacaaa gtcagctgcc
     1261 agacgttcaa gctgaccttg aaccgatcca tcaaatatcg tcgatcctat ttgcgtgact
     1321 atcccaccaa tg
//
LOCUS       DATCGC010001856         1483 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_158097, whole genome shotgun sequence.
ACCESSION   DATCGC010001856 DATCGC010000000
VERSION     DATCGC010001856.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1483)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1483)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1483
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158097"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..387)
                     /locus_tag="VIJ87_17705"
     CDS             complement(<1..387)
                     /locus_tag="VIJ87_17705"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY5446262.1"
                     /translation="MKRSHSFASDDVFLAEVTKVYDDGWSDYDRTWRERDDLQSEEWR
                     QFTSAVKPGGSVLDVGCNSGRDTRQLLDLGYRVTGLDVSEQALRLFREQCPEARSIKM
                     SLLDLADLKEQFDGIWFSYVLVHIPFN"
     gene            complement(429..>1483)
                     /locus_tag="VIJ87_17710"
     CDS             complement(429..>1483)
                     /locus_tag="VIJ87_17710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446263.1"
                     /translation="WFFAMTQPVGTSGERKFETLNVYQPNKTNQCAVTALTGRANIAK
                     ALFVRTPKPTTNDFVPVIPEDIAQATGTPLYDQNGNVVLYYVLYSPNECQATASGYLP
                     NTMEIKASWRILKSADPAYYTMTATVAGLPNNPVTLGLVGLHLVINTQLHPEFVWATF
                     EHVNNAPNCTNPQAPPAAGWSFLSSSCATCLQQNGVNGCPQCNFNVAPTTPPGITGPA
                     TQVCRVYSDGTDPGSMTNGNNNDTNRFNIDTLNSQIAGFLSQLPVTSPMSVWKNYTLV
                     SGLWTNGGVPSGGADVQRGSLEAANTTMETFYQQPNHNCFSCHNYVQQTPLTVSHIVS
                     DLLPPSIAPKRVKETK"
BASE COUNT          326 a          376 c          432 g          349 t
ORIGIN      
        1 gttgaatggg atatgcacca acacgtagga aaaccaaatt ccgtcaaact gttctttgag
       61 gtctgccaga tcgagaaggc tcatcttaat cgaccgagcc tccggacact gttcccggaa
      121 cagccgcaag gcttgctcgc ttacgtcaag accggtcact cggtacccaa gatcgagtaa
      181 ctgcctcgtg tctcttcctg aattacaccc aacatcaaga accgatcccc cgggcttgac
      241 ggctgacgtg aactgccgcc attcctcact ctgcaaatca tcacgttctc tccaggtgcg
      301 gtcgtagtcg gaccaaccat cgtcgtagac ctttgtcacc tcggcgagaa agacatcgtc
      361 actagcaaat gaatggctac gcttcatcgg caggttccca ctccactgta tctcttagca
      421 ggtccggatt atttcgtttc cttaacacgc tttggagcaa tgctcggcgg cagcaaatcg
      481 gagacgatat ggctgacagt gagcggtgtc tgttggacgt agttatggca cgagaagcag
      541 ttgtggttcg gctgttgata gaacgtctcc atagtcgtgt tggcggcttc gagcgaaccg
      601 cgctgcacgt cggcaccgcc tgatgggacg cccccgtttg tccacaggcc agagacgagg
      661 gtgtagttct tccacacgga catgggacta gtaaccggca actgcgagag gaaccctgcg
      721 atctggctat tcaacgtatc gatgttgaag cgattggtat cgttattgtt cccgttggtc
      781 atggaccccg ggtcagtgcc atcgctataa acgcgacaga cttgagtggc tggtcctgtg
      841 ataccgggtg gcgtagttgg agcaacgttg aagttgcact gggggcaacc gttcacgccg
      901 ttctgttgga ggcatgtcgc acaagagcta ctgaggaagg accaaccagc ggccggtggg
      961 gcctggggat tcgtgcagtt tggcgcgttg ttgacgtgtt cgaaagtagc ccagacaaac
     1021 tcgggatgaa gctgcgtgtt gatgactaaa tgcaagccga ctagtccgag agtcacaggg
     1081 ttattaggga gaccggcaac agtggccgtc atcgtatagt aggcggggtc agccgacttg
     1141 agaatccgcc acgaggcttt tatctccatc gtgttcggca agtaaccgga cgcagtagcc
     1201 tggcattcat tagggctgta gagaacgtag tagaggacga cattgccgtt ctggtcgtat
     1261 agcggggtgc cggtcgcttg agcgatgtcc tcgggaataa ctggaacgaa gtcgttagtt
     1321 gtcggttttg gtgtgcggac gaagagcgcc ttggcgatgt ttgcacgacc tgtcaaagcg
     1381 gtgacggcac attggtttgt cttgttcggc tgatagacgt tgagcgtctc aaacttgcgt
     1441 tcaccagaag ttcctaccgg ctgagtcatc gcaaagaacc att
//
LOCUS       DATCGC010001857         1430 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_492207, whole genome shotgun sequence.
ACCESSION   DATCGC010001857 DATCGC010000000
VERSION     DATCGC010001857.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1430)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1430)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1430
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_492207"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..287)
                     /locus_tag="VIJ87_17715"
     CDS             complement(<1..287)
                     /locus_tag="VIJ87_17715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446264.1"
                     /translation="MTPERWQRINEMFHAALVLEGGQRGAFLVAQSAGDDALRAKVEA
                     LLTSHEQAEGFIQGSVFGDAAQLLVEEEAEAMIGQHIGLYKIDREIGRGGMG"
     gene            complement(294..863)
                     /locus_tag="VIJ87_17720"
     CDS             complement(294..863)
                     /locus_tag="VIJ87_17720"
                     /inference="COORDINATES: protein motif:HMM:TIGR02999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY5446265.1"
                     /translation="MQNSAPTGVTQLLVNWSNGDKAALDEMLPLVYQELRRIAVNRLR
                     QELPNHTLQPTALVNEAYLRLIDQKNVNWQNRAQFFGLAAEMMRRILVNHALHRRAAK
                     RGGGALRVSLAVAVNSFEQKDVNLVALDEALKNLAIIDPRQCKIVEMKFFGGLTVAEI
                     ADVLQVSSDTIERDWKMARAWLHLEISNR"
     gene            1030..>1430
                     /locus_tag="VIJ87_17725"
     CDS             1030..>1430
                     /locus_tag="VIJ87_17725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446266.1"
                     /translation="MKTKTTFVMWILIAFVLVVPLACKHIGSLSSNSNSMGGSTATGT
                     PFERQLQLTGPRTLSYANLQFTLTKAVISDRVATDQPQENTNLALADLTFTVVNTLKD
                     GVSIRSALWQLKLGDGSVYKQPYEDNFAARDT"
BASE COUNT          340 a          387 c          359 g          344 t
ORIGIN      
        1 cccatccctc cacgaccgat ttctcgatcg atcttgtaga gtccaatgtg ctggccgatc
       61 atggcctcgg cttcttcctc gacgagtagt tgcgcggcgt cgccgaaaac tgacccttga
      121 atgaatcctt ccgcctgttc atgtgaagtc aaaagcgcct ctacttttgc gcgcaaggcg
      181 tcatccccag cggactgagc gacaagaaaa gcgcctcgtt gcccgccctc aaggaccagg
      241 gccgcatgaa acatttcgtt gattcgttgc catcgttctg gagtcatgct caattaccta
      301 ttgctgattt caaggtgcaa ccacgcacgc gccatcttcc aatcgcgttc aatggtgtcg
      361 gacgatactt gcaagacatc tgctatttcg gcgacggtta agcctccaaa aaacttcatt
      421 tccacgatct tgcattgacg aggatcgatg atcgcaaggt tcttcagcgc ctcatccagt
      481 gcgaccagat ttacgtcctt ctgctcaaag gaattgacgg caactgccag ggacacccgt
      541 aaggcgcctc cacctcgttt tgcggctcgg cgatgtaacg cgtggttgac cagaatgcgt
      601 cgcatcattt ccgccgcgag gccaaagaat tgggcgcggt tttgccagtt tacgtttttc
      661 tgatcgatga gccggaggta tgcctcattt accagcgccg tcggctgcag agtgtgattg
      721 ggaagctcct gacgaaggcg attaaccgcg atgcgccgca gttcctggta aacgagcggc
      781 agcatctcgt cgagggcagc cttatcgccg ttgctccagt tgacgaggag ttgagtaaca
      841 cccgtcgggg cggaattttg catcaatcat tctttctact tccaagcagc ttacgctccg
      901 agctagccaa agtgaaatga gtgcgggcat gcgggttttc aacacaattt cttgcgttac
      961 cattagaaga aagtttatcg aggtaggaac tggaacaaac gaccaaccgt cttgtcgtag
     1021 gagaaactaa tgaaaactaa aaccactttt gttatgtgga tactcatcgc atttgtcctg
     1081 gtcgtgccac tcgcttgtaa acatatcggc tcattgtctt ccaactccaa cagcatgggt
     1141 ggctcgacag cgacgggcac tccctttgaa cgtcagttac aactgacagg gccgcgaaca
     1201 cttagctacg ccaatctgca attcacgctg acaaaggctg tgatttccga tcgagtggcg
     1261 acagatcaac cgcaagaaaa taccaacttg gcgctggctg acctgacctt cacggtcgtc
     1321 aacacgttga aagatggagt ctcaatcaga agcgcattgt ggcagttgaa acttggcgat
     1381 ggatcggtat acaagcaacc atacgaagat aattttgcgg cgcgggacac
//
LOCUS       DATCGC010001858         1384 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_158120, whole genome shotgun sequence.
ACCESSION   DATCGC010001858 DATCGC010000000
VERSION     DATCGC010001858.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1384)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1384)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1384
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158120"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..810
                     /locus_tag="VIJ87_17730"
     CDS             <1..810
                     /locus_tag="VIJ87_17730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446267.1"
                     /translation="LRSPGLPEAYWIDVSCDEAGKVSGIVLNQPEGRFTFHRVVNNTL
                     ISADDLIAKMIAAYGGEANFRKHTSSLTKVEVDMENQGVQADGEISARAPNLTMTDMR
                     LKALGRQIGTIVSYFDGTSGGEVVSFGPDETYTGKRLDDVRTGSDFYDVLNWKKNYKT
                     IEVKRMGKVGDEECYVVERKGERGTPVTDYVSAKTFLVLKRESVISSETSGVELPQTQ
                     TFSDYRMVEGVMIPFKIVSSNIANGDIVVRVKDMKWDVMIPDDVFKKPVKK"
     gene            966..1280
                     /locus_tag="VIJ87_17735"
     CDS             966..1280
                     /locus_tag="VIJ87_17735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446268.1"
                     /translation="MQRTALLMILLILVALGFVGSSAGKPSGDQPDTGPKWEYLAVAG
                     PGTTNFIPSGNSKMRKSEGGFGREAFVLEQHLDKLGAEGWELVSVAGNPQDPVYYFKR
                     PK"
BASE COUNT          363 a          305 c          396 g          320 t
ORIGIN      
        1 ctgcggagtc cgggactgcc tgaagcgtat tggatcgatg tttcgtgcga cgaagctggc
       61 aaagtttctg gcatcgtact gaaccagcct gagggtcgtt tcacttttca tcgcgttgtc
      121 aataacaccc tgattagtgc cgacgattta atcgcaaaga tgattgctgc gtatggtggc
      181 gaagcaaact ttcgcaaaca cacgtcatcg ctaaccaagg ttgaagttga tatggagaac
      241 cagggtgtgc aggccgatgg tgagatcagt gcgcgtgcac caaaccttac aatgaccgac
      301 atgcgtttga aggcgctcgg tcgtcagatt ggcacgatag tcagctattt cgacggaacg
      361 agcggcggcg aagtcgttag ctttggacca gacgagacct acacaggtaa acgactcgac
      421 gacgttcgaa cgggttctga cttttatgac gtcctcaatt ggaagaagaa ctacaaaacg
      481 attgaggtga aacgcatggg gaaggttggc gacgaagagt gttatgtcgt tgagcgaaaa
      541 ggcgagcgcg gaacaccagt caccgattac gtatcggcga aaacattcct cgtcctcaaa
      601 cgcgaaagtg tgatttccag cgaaacttcc ggagtcgaac tacctcaaac acaaacattc
      661 agcgattatc gaatggtgga aggcgtgatg attccgttca agattgtatc gagcaacatc
      721 gctaacggcg acatagttgt tcgtgtgaaa gatatgaagt gggacgtcat gattccggat
      781 gacgtcttca agaaaccagt caagaaatag aaggcagtag gcagaagcag taggcaggag
      841 cagtaggtag gtagcagtta aggttccgcc tactgctttg ctgttttggg aaccaatacg
      901 aacacttcag cgtgaacgag ttcaacgcat ttcgttaacc tatggagtag aggagcacac
      961 acaccatgca acgcacagct ctccttatga tattgctgat ccttgtggcg ttgggttttg
     1021 taggaagctc tgccggaaaa cccagcggtg accagccgga taccggaccg aagtgggaat
     1081 acctggcagt ggctggtcca ggcactacaa actttatccc atctggcaat tcgaaaatga
     1141 ggaagtcaga aggtggtttt ggacgcgagg cgtttgtgct tgaacagcac ctcgacaagc
     1201 tcggcgcgga aggttgggag ttggtgtcag tggccggcaa tccacaagat cctgtctatt
     1261 atttcaaaag gccgaagtga agaggcaggc gattcgtttt aggcttcgat tttgattcag
     1321 tgctgcgtgt gcttggtagt tgtactcata ccgcgaagcg gttgcggccc aaagccctgg
     1381 gttg
//
LOCUS       DATCGC010001859         1042 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_424230, whole genome shotgun sequence.
ACCESSION   DATCGC010001859 DATCGC010000000
VERSION     DATCGC010001859.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1042
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_424230"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1042)
                     /locus_tag="VIJ87_17740"
     CDS             complement(<1..>1042)
                     /locus_tag="VIJ87_17740"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEY5446269.1"
                     /translation="KLDPNGKTVGFRGITLDVTEQQLSEEAHRRNEERNHALLEAIPD
                     PMFLQTREGVYLDYQAKDPKTLGLPSEGFTGRNMRDVLPPDLAEAFLQRFKSAETGEP
                     QVLEYDVKANGTHTWFEARIVQTGNNFLSVVRDVSARKLSEIALTQNEAQLAGIIGSA
                     LDAIITVDENEKIVVFNAAAESLFLCSAGDALGQSLDRFFPVRYRQAYRQDIQSFREN
                     KLQQRAMELRGDLYALRASGEEFPIEASISHIELSGQSFYTIILRDITERKRGVDELR
                     LSEERFAKSFRANPQPMSLTTITEGRYLDVNDSFLQMSGYNREEVIGHTSLELNIWET
                     PASRTNFLNKLRE"
BASE COUNT          242 a          273 c          249 g          278 t
ORIGIN      
        1 attccctcaa tttgtttaag aagttggtcc tagatgcggg agtttcccaa atgttcagtt
       61 ccagggaggt atgaccgatc acctcttcgc ggttataacc gctcatttgt agaaagctgt
      121 cgttgacatc caggtatctg ccctcggtaa tcgtggtcaa cgacattggt tgtgggttag
      181 ctctaaacga tttggcgaaa cgctcttcac taagacgtaa ttcatcaacc ccacgtttgc
      241 gttcagtaat atcgcgaaga attattgtgt agaagctctg accgctcagt tcgatgtgag
      301 agattgaagc ttcaatcgga aactcctcgc ccgaggctct gagagcgtac aagtctccgc
      361 gcaattccat tgctcgttgc tgtagtttgt tctcccgaaa cgattggata tcttgccgat
      421 acgcctgacg gtaacgaacg gggaaaaacc gatctagtga ttgacctaac gcgtctccgg
      481 ctgaacaaag aaagaggctt tcggctgctg cattgaagac gactatcttc tcattctcat
      541 cgacagtaat aatcgcatcg agcgccgagc cgataatccc ggcaagttgc gcttcgtttt
      601 gtgtaagcgc aatctcggat agtttgcgag cactgacatc acgtacgacg ctgagaaaat
      661 tgttacccgt ctgtacgatg cgagcttcaa accaggtatg agttccattc gccttaacgt
      721 cgtactccaa tacctgtggc tcaccagttt ctgcgctctt gaaacgttgc agaaaagcct
      781 cggccagatc aggtggcaac acatcgcgca tgttcctgcc ggtgaaacct tcagacggca
      841 accccaacgt tttaggatct ttcgcctgat agtcgagata gactccttca cgtgtctgga
      901 gaaacatcgg gtccggaatc gcctccaaca gcgcgtggtt tctctcttcg tttcgcctgt
      961 gcgcctcctc cgagagttgt tgctcagtca catccagcgt aatgccgcgg aagccaaccg
     1021 tctttccgtt cggatcaagt tt
//
LOCUS       DATCGC010001860         2347 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_293468, whole genome shotgun sequence.
ACCESSION   DATCGC010001860 DATCGC010000000
VERSION     DATCGC010001860.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2347)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2347)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2347
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293468"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1124)
                     /locus_tag="VIJ87_17745"
     CDS             complement(<1..1124)
                     /locus_tag="VIJ87_17745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446270.1"
                     /translation="MAKQLIVCVNGKEKKIAIIEDDKVSEFYIERGEQHQGIVGNIYK
                     GRVMRVLPGMQSAFVDIGLERDAFLYVSDFFDEEEEFERIVIDKSKKGTPDAEHAAAQ
                     EIAQNRVEREQRIEETQEKVEPMQEAAAPSVAETPESGEAGRRRGRRGRRRSRWEKPE
                     ETTTSAAPEREEFDVPDTPFVAGDPSIERIVDEEESAVNGEMFKDARLQERLFDQIHA
                     VEFNMEDDYRNAQVGSLLSSGLGDDSFERVDDGETEAETAVREARHLQEAHLAGFNDD
                     AVPDLLGTGSFERVSDDEDSEAEPTPRRGRKVATSSDDASAKKKRTRPAAGATKGAAK
                     KKASSKKPSKKRATDGDESAEGFADSEARVGESQSRAEFAT"
     gene            complement(2137..>2347)
                     /locus_tag="VIJ87_17750"
     CDS             complement(2137..>2347)
                     /locus_tag="VIJ87_17750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446271.1"
                     /translation="EAPVGSVTRILHGEGAHDTNRARAFALLFICNSTFIVISFLREL
                     LECSFTQWDTSPDAKEPKESIVQVD"
BASE COUNT          521 a          659 c          554 g          613 t
ORIGIN      
        1 gttgcaaatt cagcacgcga ctgactctct ccaaccctcg cctcagaatc tgcgaaacct
       61 tccgctgatt catcgccatc ggtcgctcgt ttcttcgaag gcttcttact cgatgccttc
      121 ttcttagcgg ctcccttcgt cgctccagct gcggggcgtg tccttttctt tttagcgctt
      181 gcgtcgtcgg aactcgttgc aactttgcgc cctcgtcgcg gagtgggctc agcttcgctg
      241 tcctcatcat cgctcacccg ctcaaagctt ccagtcccaa gaaggtcagg aacagcgtcg
      301 tcattgaaac cggcaagatg cgcttcttgt aggtgtcgcg cttctcggac ggctgtctca
      361 gcctcagtct caccatcgtc aactcgttca aacgagtcgt cgccgagtcc actcgataac
      421 aacgagccga cttgagcatt ccgataatca tcttccatgt tgaattcgac agcgtggatt
      481 tggtcgaata ggcgctcttg taatcgagca tccttgaaca tctcaccatt aactgccgac
      541 tcttcttcat caacaatgcg ctcaatcgaa ggatcgccgg cgacgaatgg tgtatctggt
      601 acgtcaaact cctcgcgctc tggcgctgcc gaagtagttg tctcttcagg tttctcccaa
      661 cgcgaacgtc gccgaccacg gcgtccccga cgacgacctg cttcacccga ttcaggtgtt
      721 tcggcgacac tcggggccgc cgcttcctgc attggttcaa ccttctcctg tgtttcttcg
      781 attcgttgct cgcgctcgac tcgattttga gcaatctcct gcgccgccgc atgctcggca
      841 tccggagttc ccttcttgga tttgtcgatg acaatccttt caaactcttc ttcctcatcg
      901 aagaaatccg aaacgtacaa aaaggcatct cgttccaggc ctatgtcaac gaaggccgac
      961 tgcattcccg gaagaacccg cattacgcga cccttataga tgttgccgac gattccctgg
     1021 tgttgttctc cacgctcgat gtagaactcg gacaccttgt cgtcctcgat gattgctatt
     1081 ttcttttctt ttccgttgac gcagactatt aattgtttag ccattcgaac ttaagtctcc
     1141 tcgaccggtc ttgtaccgca aatctttccg actcagtgcc aacgattcgt cgttggaaag
     1201 gaacagagtt gtctatacaa gagcgccgtg tgaaagttgt gggcggacaa ggcgatgcgg
     1261 ccttcaagca tttagcgagg cgcgaagcat catccggata agcgacacga agaaccgtct
     1321 cgccatgaat tgagttgatt gattcagccg caggaaggaa ttgaccaaag aaccaattcg
     1381 caacgggcgg atggtgggta ggtttgagat tacgccctaa agctagcgca attctcgccg
     1441 tgtgcgagga gattttcctc aacacacgaa ggcgacatat ttctttcaac agaaaaccta
     1501 actagccgcg gcgcggggaa tattctggaa ggtctcagcg gcagggagcg tagacaacca
     1561 tgacgcaatg actttgcctg gcgtcaggcg gtttgctcgg acctgtcaat aacgagcgta
     1621 ccttccaagt atccttgagc gcttcttcca acttgctcga ccgagcaaat caaacggctg
     1681 ttctaccaac gttaatttgg atcgtcttat cgacgatcgt aaatatcgga ctcgctccat
     1741 gccgaaggaa ttcttcaaga gctcctgcgc gtcttagctt tttttgactg agtgcctgat
     1801 aaagccggcc gggcgagctg ggcgaagtat aacccaagaa gcggaaattc gtgaatcgca
     1861 aatcgtaaat cgctaatagt taatcgtaaa tagtcaatga ttaatcgtta gcccctagtc
     1921 taaacgattg acgttcgatt cacgattcac tcttcacgat taaccaaaat attgacacgg
     1981 tccatcctca ggtgtagtct gcgcgcgttc gataacacga atcctcgcgt gttggcggag
     2041 ttccccccaa acgacccgtc cgtccctttg gctgttagca agcaaatcct caggcacgac
     2101 tcgccgttga tttcctgttt ttgttcttgc tttagcctaa tcaacctgaa ctattgactc
     2161 cttgggttct tttgcgtctg gggaagtgtc ccattgcgtg aatgaacact cgagaagctc
     2221 ccgcaagaag gagatcacaa tgaaagttga gttgcagata aacaacagtg caaacgctcg
     2281 tgcacgattc gtgtcatggg ctccctctcc atgcaggatc cgtgtaactg acccgacagg
     2341 tgcttcg
//
LOCUS       DATCGC010001861         1503 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_60104, whole genome shotgun sequence.
ACCESSION   DATCGC010001861 DATCGC010000000
VERSION     DATCGC010001861.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1503
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60104"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..746)
                     /locus_tag="VIJ87_17755"
     CDS             complement(<1..746)
                     /locus_tag="VIJ87_17755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446272.1"
                     /translation="MTSESSVLLFFIDGLGIGTRGPQNPLDNLDASIYLPLAVFQGEA
                     PASFLDGIVVPTDASLGVEGRPQSASGQTTILTGVNAPQAIGYHKQGFPNKALLEIIE
                     SHSIFKQLRTAGVEPITFANAYTSWFFNERPRWISATTAAVEAAAMSFRTVADLKQGA
                     AIFMDYSNRILIERGEDVEERTESEAANVLARVTAEHRFTLYEYFITDKVGHAQDMPL
                     AKKVLSSLALFIRELLQKVDLERTTVILTS"
     gene            complement(736..>1503)
                     /locus_tag="VIJ87_17760"
     CDS             complement(736..>1503)
                     /locus_tag="VIJ87_17760"
                     /inference="COORDINATES: protein motif:HMM:NF012385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY5446273.1"
                     /translation="PESLMESELFGHEKGAFTGAASRRQGCFELADTGTLLLDEIGEM
                     PPLLQAKLLRVIEERAVRRLGSTKEIEVDVRLLAATNRQPELAVAEGQLRSDLLYRLN
                     VFGIHLPSLGERKEDLPLLAQHLVTQLAEKHGRPARFLSPSALNALQFHAWPGNVREL
                     RNVIERAVIICSGEQIERHHFAPYPIEQRERLRNEDTLTLPVGTPLEEVERQMIMRTL
                     QKTKNNKTRAAELLGISLKTLHNKLNLYRERGLLHDE"
BASE COUNT          338 a          376 c          393 g          396 t
ORIGIN      
        1 tcgctcgtga gtataactgt agttcgctcc agatcaacct tttgcagcaa ctcccgaatg
       61 aagagtgcaa gactggaaag tactttcttc gctagaggca tgtcctgagc gtgacccact
      121 ttgtctgtga tgaagtattc gtagagcgtg aagcgatgtt cggcagttac tcttgccagc
      181 acattcgccg cctctgattc ggttctttcc tcaacgtctt cgcctctttc tatcaagata
      241 cgattcgagt agtccataaa gattgccgca ccctgcttta agtcggcgac agtgcggaaa
      301 gacattgcgg ctgcttccac agctgccgtg gtagccgata tccagcgcgg tcgctcatta
      361 aagaaccagc tggtgtaggc attcgcgaaa gtgattggct caacgccggc ggtgcgaagt
      421 tgtttgaaga ttgaatgcga ttcgattatt tccagcaagg ctttgttagg gaagccttgt
      481 ttgtggtaac caatcgcttg tggagcgttc acgccggtta gaatcgttgt ttgacctgaa
      541 gcgctttgcg ggcgaccttc aacgccaaga cttgcatcgg taggcacaac gataccatcc
      601 agaaatgatg cgggtgcttc gccctgaaaa accgcaagcg gcaaatatat agaagcatcc
      661 aggttgtcga ggggattttg tgggcctcgt gtaccgatac ccaatccatc gatgaagaat
      721 aggaggactg acgattcact cgtcatgcag gagtccacgc tcgcgatata ggtttagttt
      781 gttgtgaagg gttttgaggc tgatgcccaa cagttctgct gcgcgagtct tgttgttttt
      841 ggtcttctgc aacgttcgca tgatcatctg acgttcaact tcctcgagtg gcgttccaac
      901 tggaagtgtc agcgtgtctt cgttgcggag tcgctcgcgt tgctcaattg ggtatggcgc
      961 aaagtgatga cgttcgatct gttcgccgga acaaatgatt acggcacgct cgattacatt
     1021 tcttagctcg cgcacgtttc cgggccaggc gtgaaactgc aacgcgttca atgcagatgg
     1081 actcagaaac cttgctggcc gaccatgctt ttcagccaac tgagtgacga gatgctgcgc
     1141 tagcaaaggg agatcttctt ttctttcgcc aagtgaaggt aaatgaatac caaagacatt
     1201 gagtcgatat aacaggtcgc ttcgcaattg cccttccgcc actgctagct caggctgtcg
     1261 gttggtggcg gccaacaatc gaacatccac ttcaatttct ttggtgctac caagtcgtct
     1321 tacggcccgt tcttcaatga cgcgaagaag ttttgcctgg agcagcggtg gcatctcacc
     1381 aatctcgtcc agcaaaagtg ttcctgtgtc ggctaattca aagcagccct ggcgtcgcga
     1441 agccgcgccc gtaaacgcgc ctttctcatg accaaaaagt tcggattcca ttaacgactc
     1501 ggg
//
LOCUS       DATCGC010001862         1178 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_225927, whole genome shotgun sequence.
ACCESSION   DATCGC010001862 DATCGC010000000
VERSION     DATCGC010001862.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1178)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1178)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1178
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_225927"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..533
                     /locus_tag="VIJ87_17765"
     CDS             <1..533
                     /locus_tag="VIJ87_17765"
                     /inference="COORDINATES: protein motif:HMM:NF013781.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HEY5446274.1"
                     /translation="ALRTQQVIAHESGVTDTADPLAGSYAIEHLTTEIEARANDYLKK
                     IDAMGGMLRAIETGYVQREIQESAYRYQRAIESQEEIVVGVNKFQVDEDHPLATLRID
                     PKLESAQIERVRAVRAKRNNEVTESALTRLEQAAAGDDNLVPYILECVETYATVGEIS
                     NRLRRVWGEYRETSTV"
     gene            550..981
                     /locus_tag="VIJ87_17770"
     CDS             550..981
                     /locus_tag="VIJ87_17770"
                     /inference="COORDINATES: protein motif:HMM:NF024287.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3828 domain-containing protein"
                     /protein_id="HEY5446275.1"
                     /translation="MRRIALSSLFVLLVISTAFSNPPSPPSPEDTVRQFYTWYLHGLN
                     KHVPNPLKNRTVSLKYLTPEFLRRAPRLAKETDADAIICAQDFDEEWEKNVKVDAATI
                     NGSRATTFVQLHGPQMDSLKLKITLKKTTAGWRIDAVDCGQ"
BASE COUNT          293 a          290 c          327 g          268 t
ORIGIN      
        1 tggctctgcg aacccagcag gttatcgcac acgagtctgg cgtgacagat acggctgatc
       61 cacttgccgg ctcttacgca atcgaacacc ttacaactga gatagaagcc cgcgctaacg
      121 actatttgaa gaagattgat gcgatgggtg gcatgctgcg cgccatcgaa acaggttacg
      181 tgcaacgtga gattcaggaa tctgcttacc gttatcagag agccatcgaa tctcaggaag
      241 agatcgtggt tggtgtaaac aaattccagg tcgatgagga tcacccactg gcaaccttgc
      301 ggatcgatcc caaattggag agtgctcaga ttgagcgagt gcgcgctgtt cgagcaaaac
      361 gaaacaacga agtgaccgaa agtgcattaa cgcgactcga gcaagccgcg gcaggcgacg
      421 acaacctggt accttacatt ctcgagtgtg ttgagaccta cgctacggta ggtgaaatta
      481 gtaatcgttt gcgacgcgtt tggggtgagt acagagaaac ttcgacagta tgaaaggtgg
      541 cttcactgca tgagacgcat agcgttgtct tctctttttg ttcttctagt tatctcaaca
      601 gctttcagta atccaccgtc gcctcccagc ccggaggata cagttcgtca gttctacacc
      661 tggtatcttc atggcctgaa caagcacgtt ccgaacccgc taaagaatcg aactgttagc
      721 ctgaagtact taactccgga atttcttcga cgcgcgccgc gtcttgcgaa agagacagac
      781 gcagatgcga tcatctgcgc gcaggacttt gatgaggagt gggagaagaa tgtcaaagtc
      841 gacgcggcga cgattaatgg cagtcgggcc acaacatttg tacagcttca tgggccccaa
      901 atggattctc ttaagttgaa gataactctc aaaaagacta ctgccggatg gcgaatcgat
      961 gcggtggact gtggccagta gttggtggcg ccgaagtgtt gtagggtcag tatcacaacg
     1021 cggtagcgtg tggctctacg cggcttcgcc gctctcccgt gctgaaagcc tctggctttc
     1081 cgatatcggg tcacaacttt ggaggcttcg cctcggcggc atagccgcaa cggtttcgga
     1141 cagtgaacgg aaagttggag gctttccgca cggaagac
//
LOCUS       DATCGC010001863         1254 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_293490, whole genome shotgun sequence.
ACCESSION   DATCGC010001863 DATCGC010000000
VERSION     DATCGC010001863.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1254)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1254)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1254
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293490"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(120..>1254)
                     /locus_tag="VIJ87_17775"
     CDS             complement(120..>1254)
                     /locus_tag="VIJ87_17775"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4118 domain-containing protein"
                     /protein_id="HEY5446276.1"
                     /translation="GGTVAVSSTTVLLKLLGEHINSTTVALVLLVVVLLVATRWGSVP
                     AMFTSLMAMLCFNFFFLPPFGTFSIAATDNWVALTAFMLTAIIVGQLSAGAKHRAEEA
                     ENRRQQIERLYAELREAFERAKHAEALQESERLKSALLDAVSHDLRTPLASIKASITT
                     LIDEARSETDAALDPESRIEMMEVIDEETDRLNRFIGGLIELARIEAGELKLRRKWGT
                     VDEIISTALGRAGEITKGRRVEVNIESELPNVRVDERAVSEVVYTLVENAAKYSPPGT
                     DIIVDAERSSDGMIMMYVEDRGLGIPDSLRERVFDKFFRATRDGDISTHQPSGTGMGL
                     AIAKGIVEAHHGRIWIESGREGQGTRVMFTVPIGDDDEQINKV"
BASE COUNT          269 a          368 c          308 g          309 t
ORIGIN      
        1 gaggccgttt actccatcct cggccgccag cacgtcgtaa ccgcgtgact tgagtcccgt
       61 gcgcagcacg cgagtcaact gcggctcatc atcaaccacc agtattcgag gcttatcgtt
      121 cataccttgt tgatttgttc gtcgtcatca ccgatcggca ctgtaaacat gacgcgcgtg
      181 ccttggcctt ccctgccgga ctcgatccag atacgtccgt gatgagcctc aacgatccct
      241 tttgcgatgg ccagtcccat gccagtgcct gagggctggt gagtgctgat gtcgccatca
      301 cgagtggcgc gaaagaattt atcaaacact ctttcacgca atgagtcggg tatgccaagt
      361 cctctgtcct ctacgtacat cattatcatt ccatcactag agcgctcagc gtcgacgata
      421 atatccgttc cggggggcga atacttggcg gcattttcga ccaacgtata aacgacttcg
      481 cttaccgctc tttcatccac tcgaacgttg ggcagctctg actcgatgtt gacttcgact
      541 cgtcggcctt ttgtaatctc tcccgcacga cccagtgcgg ttgaaataat ctcatcaaca
      601 gttccccact tgcggcgcag tttcaactct cccgcctcga tgcgcgccaa ctcgatgagt
      661 ccaccgataa agcggtttag cctatctgtc tcttcatcga tcacctccat catttcgatc
      721 cgcgactctg gatcgagcgc ggcgtcggtt tcgcttcttg cctcgtcgat cagcgttgtt
      781 atcgacgctt tgatagaagc gagtggagtt cgaagatcat gggaaacggc atcgagcaaa
      841 gccgacttta atctctcgct ctcttgtaaa gcttccgcgt gctttgcgcg ttcaaaggcc
      901 tctcgcagct ccgcataaag tcgctcgatc tgttgccgcc tgttctctgc ttcttcggca
      961 cgatgtttcg cgcctgccga caattgtccg acaataattg ccgtcagcat aaatgccgtg
     1021 agcgcgaccc agttgtctgt agccgcaatt gaaaacgtac cgaagggtgg caggaagaaa
     1081 aagttgaaac acaacatcgc catgagggaa gtaaacatgg ccggaacgct tccccaacga
     1141 gttgcgacca ataggacaac aaccaggagc acaagcgcga cagttgtgga gttgatgtgc
     1201 tcgcccagta gttttagtag gaccgttgtg cttgagaccg cgacagtgcc gccc
//
LOCUS       DATCGC010001864         1489 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_328271, whole genome shotgun sequence.
ACCESSION   DATCGC010001864 DATCGC010000000
VERSION     DATCGC010001864.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1489)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1489)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1489
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_328271"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..261)
                     /locus_tag="VIJ87_17780"
     CDS             complement(<1..261)
                     /locus_tag="VIJ87_17780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446277.1"
                     /translation="MRDEHIIEMLDNTPLGNLSAAQLEVVRTHSQNCLTCERAYEASQ
                     LSSALVKERVQTVIEPSAFFQTRVMAALREQQAVESVPAWLRL"
     gene            complement(251..850)
                     /locus_tag="VIJ87_17785"
     CDS             complement(251..850)
                     /locus_tag="VIJ87_17785"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY5446278.1"
                     /translation="MASLAQNGDESAFAEIVRRYSPRVFSVASRFFRQRSSVEEAAQE
                     VFLKAFTQLKSFEGRGSMEGWLTRIATNTCLNMLRSAKRRPELTVSDLTEDENKWLDQ
                     HVSEVAGVRQPNVEETLIAADLADRVLDVLPPEDQLALLMIDGEDASVKEVAEATGWS
                     ESKVKVRAFRARKKLREAMEKLLSHKKQLQIEGAIGNER"
     gene            complement(965..>1489)
                     /locus_tag="VIJ87_17790"
     CDS             complement(965..>1489)
                     /locus_tag="VIJ87_17790"
                     /inference="COORDINATES: protein motif:HMM:NF019430.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Spy/CpxP family protein refolding chaperone"
                     /protein_id="HEY5446279.1"
                     /translation="KMNKPRFKTLAIATLSAIVLAASIAVAQTVSTGQDTTQGQQKQW
                     QRHGRGERREHGWGGMHGGAFRQLNLTDDQKAKMKTIRESFAERNKPLREQLHAKRQE
                     LHQASEGGTFNEALATQKLTDMASLEAKLMGEEFKMHQNMLSVLTAEQKAQLEQSKAQ
                     FKARRGEMRKGESK"
BASE COUNT          304 a          435 c          343 g          407 t
ORIGIN      
        1 caatcgcagc catgccggga cactttcgac agcttgttgt tcgcgcaaag cagccatcac
       61 tctcgtttga aagaacgcgg atggctcaat aacagtctgc actcgttcct tgacgagcgc
      121 gctcgacagc tggctcgcct cgtatgcacg ttcacaggtc aaacagttct gactatgcgt
      181 gcgcacaact tccagttgcg cggccgatag gttaccgagt ggtgtgttgt ccagcatctc
      241 aatgatgtgt tcatctctca ttgcctatcg ctccttcgat ttgtagctgt ttcttgtgac
      301 tcaacagctt ctccatcgct tccctcaatt tcttgcgagc tctgaaagct cgtactttca
      361 ctttcgattc cgaccaacca gtcgcctcgg caacttcctt aaccgaagca tcttcaccat
      421 caatcatcaa caacgccaac tgatcttccg gcggcaaaac atcaagcacg cgatccgcca
      481 aatccgccgc tataagcgtt tcttcaacgt taggctgccg aactcctgcg acttcagata
      541 catgctgatc caaccacttg ttctcatctt cagttagatc tgacactgtc aactccggtc
      601 ttcgcttggc gctgcgcaac atgttcaagc aagtgttcgt ggcaatgcga gtcaaccagc
      661 cttccatcga accacgtccc tcaaaactct tgagctgggt aaatgctttc aagaaaactt
      721 cctgggccgc ttcttcaacc gaacttcttt gccggaagaa ccgactcgcc acactaaaga
      781 cacgcggact gtaacgacga actatttccg cgaaggcaga ctcgtcgccg ttctgcgcga
      841 gactcgccaa ctctaaatcc gaggcctgtt cgtgcccgtt tgtcagatgc ggtcctcatg
      901 gtagtaaacg gaatggcgga cgcttagtcg ttattgcggt ccgccatttc cgtgggggag
      961 acgcttactt gctttcgcct ttgcgcattt caccgcgtcg agctttgaac tgcgctttgg
     1021 actgttccag ctgggccttc tgctcagcag ttaagacgga aagcatgttc tggtgcatct
     1081 tgaattcctc acccatgagt ttggcttcaa gactcgccat gtccgtcagt ttctgagtag
     1141 ccagcgcttc gttgaacgta ccgccttcac ttgcctggtg caactcctgc cgtttggcat
     1201 gaagctgttc gcgcaatggt ttgttgcgct cggcaaagct ctcgcggatc gttttcatct
     1261 tagctttctg gtcatcagtt agattgagct gtcggaaggc gccaccatgc attcctcccc
     1321 agccatgttc tcttcgttca cctcgaccat gtcgctgcca ttgtttctgc tggccctgag
     1381 ttgtgtcctg gccagttgag actgtctgag cgacggcgat cgaagcagcc aaaacaattg
     1441 ctgagagagt agctattgcc aatgttttaa agcgtggttt gttcatctt
//
LOCUS       DATCGC010001865         2252 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_293527, whole genome shotgun sequence.
ACCESSION   DATCGC010001865 DATCGC010000000
VERSION     DATCGC010001865.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2252)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2252)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2252
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293527"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(49..1131)
                     /gene="pstS"
                     /locus_tag="VIJ87_17795"
     CDS             complement(49..1131)
                     /gene="pstS"
                     /locus_tag="VIJ87_17795"
                     /inference="COORDINATES: protein motif:HMM:TIGR00975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0042301 - phosphate ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HEY5446280.1"
                     /translation="MSAWKRSAQSVVLLGAFVALSVFVGCDPGNKGVSPGPVQLQGAG
                     ATFPNPLYQKWLSEYGKLHADVKIDYQSIGSGGGIKQIKDQTIDFGASDTPMKDEDLK
                     SAPSELLHIPTVLGAVVITYNLEGVAQALRFSPDVVADIFLGKIKKWNDPRIAADNAG
                     AKLPAADITVVHRSDGSGTSGVFTDYLSKVSPEWKEKVGAGPSPSWPVGIGGKGNEGV
                     TGQVKQTPNTIGYVELVYAVQNKLPVAQIKNASGAFVEPSIDSVIAAAAASAANTPDD
                     LRVSITNAQGAQVYPISSYTYILVYKDQKDAAKGKAVVDFLWWGIHDGENFAKDLHYA
                     ALPADIVKRTEAKLNSITAGGIALRK"
     gene            complement(1253..1612)
                     /locus_tag="VIJ87_17800"
     CDS             complement(1253..1612)
                     /locus_tag="VIJ87_17800"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY5446281.1"
                     /translation="MSLREMSLTEQKGQGSSTEDVYDDGYLRVEHKNYYVACGGTPLK
                     LPRTEFLIFSRLARTPDRIVTAGDLWESVWGSNKPLNTESLHVYIYRLRAKLAAFGLQ
                     IETMVNVGYRLLTSPTH"
     gene            complement(1683..>2252)
                     /locus_tag="VIJ87_17805"
     CDS             complement(1683..>2252)
                     /locus_tag="VIJ87_17805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446282.1"
                     /translation="FANGFVAQLPGTVNAANPLPPGFIAVVNTPGGGASRNVRRPDFV
                     SGVNPYQDADRLVLNPAAFTTPAPGTFGNVPRNALRGPNFNQLDLIFNKRFRFNESTN
                     LEFRTEIFNIFNHTNFDIPGSRLNLALPSVAFAGGAYTFSTSNVNQPGQPYTQGAAGG
                     TFGLLRQTVIRDVGLGTNRQIQFALRLNF"
BASE COUNT          534 a          600 c          579 g          539 t
ORIGIN      
        1 ctccaaaagc cagattgttt ggcgtggacg cgctcatatc aaggggcgct acttcctgag
       61 cgcaattcct ccagcggtaa tcgaattgag cttcgcctca gtacgcttca cgatgtcggc
      121 cggaagcgcg gcgtagtgca aatcttttgc gaagttttca ccgtcgtgaa ttccccacca
      181 tagaaaatcg accacggcct ttcctttggc ggcatctttt tgatccttgt aaacgaggat
      241 gtacgtgtag ctcgagatcg gatatacctg cgcgccctga gcattggtga tcgacacacg
      301 aagatcatcg ggtgtgttgg ccgccgacgc cgcagcagct gcaatcactg aatcaatcga
      361 aggctcaacg aacgcgccgc tggcgttctt gatttgagcc accggcaatt tgttttgtac
      421 cgcgtacacc aattccacgt acccgattgt atttggtgtt tgcttgacct gccccgtgac
      481 gccttcgttg cccttaccac caattccaac gggccaactg ggtgaaggtc ccgctcccac
      541 tttctctttc cactcggggc tcacctttga aaggtagtct gtgaaaactc cggaagtacc
      601 gctgccatcc gagcgatgaa ctacagtgat atcagctgcg ggcagcttcg ctccggcatt
      661 gtccgcagca atccgcgggt cattccattt cttgatcttc ccgaggaata tgtccgcaac
      721 gacatcaggt gagaagcgca gcgcctgggc gacgccttcg aggttgtacg tgatcacaac
      781 agcaccgagg accgttggaa tgtggagaag ttcactcggc gctgacttca gatcctcatc
      841 cttcatgggc gtatcggatg caccgaagtc aatcgtttga tccttgatct gtttgatacc
      901 cccgccggat ccgatcgatt ggtagtcgat cttcacatct gcgtggagct ttccgtattc
      961 gctcaaccac ttttgataaa gtgggtttgg gaaggtggct ccagctcctt gcaattgaac
     1021 cggcccggga ctcacccctt tattacccgg atcacatccg acaaaaaccg acagcgcgac
     1081 aaatgcgccg agcaaaacta ccgattgagc acttctcttc caggcggaca ttaggtatct
     1141 cctaagctgt tgggctgatt cagagcgaag ctgtaagcag caatctaaat ttcctgtgtt
     1201 acatcagact gaacttcacc tgaattctcg gttaacagct gggattatcg attcagtggg
     1261 tcggcgaagt aagaagccga tagccgacgt tcaccatcgt ttcgatctgt aagccgaagg
     1321 cggccagctt ggcacgcagg cggtagatgt agacgtggag actttcggta ttcagtggtt
     1381 tgttgcttcc ccaaaccgat tcccaaagat caccggccgt gacaatccga tccggagttc
     1441 gagccaagcg ggaaaaaatc aggaactcag ttcgcggtag ttttagcggc gttccaccac
     1501 aggcaacgta atagtttttg tgttcgaccc gaagatagcc gtcgtcataa acgtcctcgg
     1561 tcgaactgcc ctgccccttc tgctcggtta atgacatttc tcttaatgac atatgaatgt
     1621 tcccaggcgt tgaaaaggag gtcgccgctg gtgaacgaac gacctccagg aaaacttgcc
     1681 atctagaagt tcagcctaag ggcaaattga atttgacgat tcgtccctaa gccaacgtca
     1741 cgaattacag tttgtcgtaa caaaccaaac gtgccgcccg cggctccctg cgtgtacggt
     1801 tgaccaggct ggttaacgtt gctggtgcta aacgtgtaag cgcctccggc aaaagctacc
     1861 gacgggagag ccaggttcaa acgagaaccg ggaatatcaa agttcgtatg gttgaagatg
     1921 ttgaagatct ccgtccgaaa ttcgagattg gtactctcat tgaatcggaa tcgcttgttg
     1981 aaaatcagat caagctgatt gaagtttgga ccacgcaacg cattgcgagg tacgttgcca
     2041 aaggtacccg gtgcaggagt agtaaaagct gccgggttaa gtactagacg gtcggcatcc
     2101 tgatacggat taacaccact cacgaaatcc ggtctgcgca cgtttcgtga tgcgccgcct
     2161 ccaggggtat tcacaacagc aatgaacccc ggaggtaacg gattagcagc gttgacggta
     2221 cctgggagtt gagccacgaa accatttgca aa
//
LOCUS       DATCGC010001866         1247 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_424304, whole genome shotgun sequence.
ACCESSION   DATCGC010001866 DATCGC010000000
VERSION     DATCGC010001866.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1247)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1247)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1247
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_424304"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(44..937)
                     /locus_tag="VIJ87_17810"
     CDS             complement(44..937)
                     /locus_tag="VIJ87_17810"
                     /inference="COORDINATES: protein motif:HMM:NF042769.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY5446283.1"
                     /translation="MHKLLNSVFLILLVVSGVFAQAKTTDVEIIPDVVYGHKDGMALT
                     FDVFKPKKSNGAAVIFMVSGGWVSAYAPPGQAQTRYQELLDKGFTVISLRHGSSPKYV
                     IPEIVADVRRAVRFIHYKAKDWGVDPNRLGVWGGSAGGHLSLMIGTASDAGDPTATEP
                     FLKESDRVASVVAYFPPVDLRNLARGVNPPASGTVLDRFPALNFDKEKAADYSPIMFV
                     TSDDPPTLLIHGDKDELVNISNSEIIYQAFQKAKVKTDFITIPGAGHGFRGEDAKKAT
                     AAMVSWFEQTLLKPVSSTTQQ"
BASE COUNT          302 a          324 c          299 g          322 t
ORIGIN      
        1 ccccgctcgc tgttggaccc tgtccccgct aaacatacac aaatcactgc tgagtcgttg
       61 aggaaacagg cttgagtagt gtctgttcga accaacttac catcgcggca gtggctttct
      121 ttgcatcttc accacgaaag ccgtgacctg cgcccgggat cgttatgaag tctgttttta
      181 ccttcgcctt ttgaaatgct tgataaatga tctcgctgtt gctgatgttg acgagttcgt
      241 ccttatcgcc atggataagt aacgtcggcg gatcgtctga cgtcacaaac atgatcggtg
      301 aataatcagc agctttttct ttgtcaaagt tcagcgcagg aaatcgatcg agaacagtcc
      361 cacttgccgg aggatttaca ccgcgtgcga gatttcttaa atcaaccggt ggaaagtaag
      421 ccacgactga ggccactcga tcactctctt tcaagaacgg ctcggtcgct gttggatcac
      481 ccgcgtcaga agccgtgccg atcatcagtg acaggtgtcc acccgcactt cctccccaca
      541 cgcccagtcg attcggatca actccccagt ccttggcttt gtaatggatg aaacgcaccg
      601 cccgtcgaac atcagcgacg atctctggga tgacatactt tgggctgctt ccatgtcgca
      661 gagaaatcac agtgaatccc ttgtcgagca attcctggta acgtgtttgt gcctgaccgg
      721 gaggcgcata ggcagaaacc cacccaccac tcaccatgaa gatcaccgct gcgccattcg
      781 atttctttgg cttgaatacg tcaaaggtca gcgccattcc gtccttgtgg ccgtagacta
      841 catcgggaat gatttcaacg tcggttgtct ttgcttgcgc aaaaacgcca gagacaacta
      901 gcaagattag aaatactgag ttcaggagct tgtgcatttt gagggtcctc cgttcggttg
      961 ctaacgataa tactaggaac aacgatttca agtcatgcat tccatttacc gggtccctga
     1021 ccaatcggga atctctgttt acctctgtgc tctctgtgtc tcgtggttga gtaagtttct
     1081 gagcttgatt tcaccacaga gactcagagg gcgcagaggt agcacagaga aaatccaaaa
     1141 ctaaggcact atctattgct acgatttcaa cacatgttga gcgtactttt cgacgcgtgt
     1201 aagattcgaa tctgatgggg ggatatcgaa gtcatgaact agggaag
//
LOCUS       DATCGC010001867         1187 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_158178, whole genome shotgun sequence.
ACCESSION   DATCGC010001867 DATCGC010000000
VERSION     DATCGC010001867.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1187
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158178"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            121..1032
                     /locus_tag="VIJ87_17815"
     CDS             121..1032
                     /locus_tag="VIJ87_17815"
                     /inference="COORDINATES: protein motif:HMM:NF016142.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine-5'-phosphate glycosidase"
                     /protein_id="HEY5446284.1"
                     /translation="MLKPDLLQISPNVSEALATNQPVVALESTVIAHGLPRPINLETA
                     QRLEAIVRETAATPATIGIIDGKLAVGLTDAQIRFLAENTEVKKVSTRDIPIAVAKNW
                     NGATTVASTSWIAHRAGIKVFATGGIGGVHRGSLPDISADLPELTRTPIIVVCSGAKI
                     VLDLPATREWLETNAITVVGYQCDELPAFYSRHSGLSIDVRADAPSDVARLFAAQRDL
                     GLESALLVTVPVPEKFEVPSDALQTVLNDALDEAEQNAIGGRELTPFLLSHMAEHSGG
                     STLRANIALLENNARVAAEIAKELTKI"
BASE COUNT          294 a          304 c          331 g          258 t
ORIGIN      
        1 tgttaacctt agggcgactt agtggcaagg tgtgcaggcg aggacacctg cggtcccaga
       61 agagcgatgt tgatttaagc gaagtagcta ctaaagtgtt accgctttca aagcctgatt
      121 atgctgaaac ctgaccttct acaaatatcg cctaacgtct ccgaagcgct ggcgacgaac
      181 caacccgtcg tcgcgcttga atcaactgtc attgctcacg gcttgcctcg tccaatcaat
      241 ctggaaactg cacaacgcct cgaggctatc gttcgtgaaa ctgcagcgac cccagcaacg
      301 atcggaatca tcgacgggaa gttagccgta ggcctgactg acgctcagat tcgttttctt
      361 gccgagaata cggaggttaa gaaagtcagc acccgcgata ttccgatcgc tgttgccaaa
      421 aactggaatg gtgcgaccac tgttgcgtcg acgagttgga ttgcccatcg cgccgggata
      481 aaggtttttg cgaccggagg aatcggtggt gtccatcgcg gttcgttacc ggatatctcg
      541 gcggacctgc ccgagcttac acgcactccc atcatcgtgg tctgttccgg cgcaaagatc
      601 gttttggatt tgccggcaac acgagagtgg ctcgaaacca atgcgattac tgtggtcggc
      661 tatcaatgcg acgagctgcc ggctttttat tcccgacaca gtgggttgtc aattgatgtt
      721 agagctgatg caccttcaga cgtggcgcgt ttgtttgccg cacagagaga tctgggactg
      781 gagtcggctc tgcttgtgac agtaccggtt ccagagaagt tcgaagttcc atcggatgcg
      841 ctacaaaccg tcctcaacga cgcacttgac gaagcagaac aaaatgcaat cggcggccga
      901 gagctaacgc ctttcctgtt gagtcatatg gcagaacaca gtggaggctc aacgctccgc
      961 gcaaatatcg cgttactgga aaacaatgcg cgtgttgcgg cagagattgc taaagaattg
     1021 accaagatat gaagccctca caataaacag aacaagctgg aaaggggcag ctcaaggttg
     1081 ggcgcgcact aatcgagaac aagctgggaa gggggcagcg aaaatttgga cgcgtggcaa
     1141 aagtgatcct gagcgtgccc ccgctgactc gccatcgaag cgcgtag
//
LOCUS       DATCGC010001868         2046 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_391678, whole genome shotgun sequence.
ACCESSION   DATCGC010001868 DATCGC010000000
VERSION     DATCGC010001868.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2046
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_391678"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..372)
                     /locus_tag="VIJ87_17820"
     CDS             complement(<1..372)
                     /locus_tag="VIJ87_17820"
                     /inference="COORDINATES: protein motif:HMM:NF013499.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OB-fold nucleic acid binding domain-containing
                     protein"
                     /protein_id="HEY5446285.1"
                     /translation="MTSQSVALASEKQIYINQLSAHVGSEVILKGWLYNMRSSGKICF
                     PQLRDGTGVVQCVAVKSAIAEDVWEALKGLGQESALVIKGTVRVDSRAPSGYEIDVVT
                     AEVLQQVQNYPISPKEHGTEFL"
     gene            complement(399..1439)
                     /locus_tag="VIJ87_17825"
     CDS             complement(399..1439)
                     /locus_tag="VIJ87_17825"
                     /inference="COORDINATES: protein motif:HMM:NF013775.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HEY5446286.1"
                     /translation="MSSAKQVVSNAFETSASERLARFIAGQGITGLEITPLTPDASTR
                     KYFRIPWKKGKAIAAVYPEAFDPEFHPYLDVTRLFVEAGIPVPEIYAVDGAAGMIIQE
                     DLGDQQLFQAYEDESEDQCDEYKEQAIKLIARIQAATDMASQMQSIASRLAFDEAKLS
                     WELEFFFEHYFGSLRQETLRHAETAELKAELNDLAAELAAVPRVLCHRDYHASNLMVD
                     GKRRLRVIDHQDARMGPATYDLVSFLLDRQPVPPSLAELRGYRLFFLEERRSHGLGVV
                     DPDDFANEFRLMTIQRGLKATGTFSYQTAVSGRGAVYEQFIQPTLEIVHQAAEWLDRF
                     PTLQRMIKERLN"
     gene            complement(1534..>2046)
                     /locus_tag="VIJ87_17830"
     CDS             complement(1534..>2046)
                     /locus_tag="VIJ87_17830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446287.1"
                     /translation="NFGGMPKPTDENPLMFTGIQIFEPRIFDYIPKGVFSHSTTDVFP
                     KAIAKGERIAAHVAKGMWRELSTLQRYLDISLELMESSGNSISVGAGCTIEEETEISE
                     AILWDRVTVERGARVHRSVLADGVTIKSNDVVENAIVVAAKLVKGKVPPQKSMKGYLQ
                     GENFVVPLAV"
BASE COUNT          475 a          530 c          500 g          541 t
ORIGIN      
        1 cagaaactca gtgccatgtt ctttcggaga aatcggataa ttctgcacct gctgcagaac
       61 ctccgcggtt acaacgtcga tctcataacc actaggtgcc cggctgtcta cacgcacggt
      121 tccttttatg acgagggctg attcctggcc cagacccttt aatgcttccc agacgtcttc
      181 ggctatcgcg ctcttgaccg cgacgcattg aactacacct gtaccgtctc gtaattgtgg
      241 aaagcagatc ttgccgctcg aacgcatgtt gtagagccag cctttcagaa tcacttctga
      301 accgacatgc gctgatagtt gattgatgta gatttgtttt tctgaagcta gtgctactga
      361 ttggcttgtc attgataaac cgagatgaat ttgaggagtt agttaagtct ttctttaatc
      421 atgcgctgca aagtaggaaa tctatcaagc cactcggccg cctggtgaac aatctccagt
      481 gttggttgga taaactgttc ataaactgct ccgcgtccac tcacagctgt ttgataggag
      541 aacgtgccgg ttgcttttag tccgcgttgg atagtcataa gccggaactc attcgcaaag
      601 tcgtccggat caacgacgcc taatccgtga ctgcgtcgtt cttcaaggaa gaacaatctg
      661 tacccgcgta attccgccaa tgaaggtgga acgggctgac gatcgagaag gaaagaaaca
      721 aggtcgtaag tggcgggtcc cattcgcgca tcctgatggt cgattactcg taggcggcgc
      781 ttcccatcca ccatcaggtt cgaagcgtgg taatcgcgat ggcaaagcac cctcggaaca
      841 gcggcgagct ctgcggcgag gtcatttagt tccgccttga gctcggctgt ttcggcgtgt
      901 ctcaaagttt cctgtcgaag gcttccgaaa taatgttcga aaaagaactc gagctcccat
      961 gaaagctttg cttcgtcaaa agcaagtcga ctcgcgatcg attgcatctg cgaagccatg
     1021 tcagttgcgg cctggattcg ggcgatgagc ttgatcgctt gttctttgta ctcgtcacac
     1081 tgatcttcgc tttcgtcctc atacgcctga aacagctgct gatctccaag atcttcctgg
     1141 atgatcatcc cggcggcgcc atcaacagcg tagatttccg gaaccggaat gcccgcttca
     1201 acgaagagac gagtcacgtc caggtacgga tgaaactcgg gatcgaaggc ttcgggatag
     1261 acggcggcaa tcgctttccc cttcttccag gggatgcgaa agtattttcg agttgaagca
     1321 tcgggggtaa gcggtgtgat ttccagaccg gttatgccct gaccagcaat gaatctagca
     1381 agtcgttcag atgccgacgt ttcaaatgcg ttggagacca cttgttttgc agaactcatc
     1441 agcgaaatcg taggggagtt tcaagcttaa aaagcagcgg gactgtccga cgtcccgcct
     1501 catcaagttc ttttgtttgt ggcggcgatt gtatcaaacg gccaaaggca cgacaaagtt
     1561 ttctccttgc aaataacctt tcattgactt ctgaggcgga accttaccct taaccagttt
     1621 ggcagcaaca acaatcgcat tctccaccac gtcgttgctc ttgattgtca caccatccgc
     1681 caatactgat ctgtgaacgc gggctcctct ctcaacggtt actcgatccc acagaatcgc
     1741 ttcgctgatc tcagtttctt cttcgatcgt gcaaccggca cctacgctga tgctgtttcc
     1801 cgagctttcc attaactcaa gactgatgtc tagatatcgt tgaagggttg agagttcgcg
     1861 ccacattccc ttagctacat gtgccgcaat ccgttcacct ttcgcaatcg cttttggaaa
     1921 aacatccgtt gttgagtggg aaaaaactcc cttgggtatg tagtcgaaga ttcttggctc
     1981 aaagatctga atgcccgtaa acatcaacgg gttttcatcg gtgggttttg gcattccgcc
     2041 gaagtt
//
LOCUS       DATCGC010001869         2006 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_424327, whole genome shotgun sequence.
ACCESSION   DATCGC010001869 DATCGC010000000
VERSION     DATCGC010001869.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2006)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2006
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_424327"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            94..1671
                     /gene="betB"
                     /locus_tag="VIJ87_17835"
     CDS             94..1671
                     /gene="betB"
                     /locus_tag="VIJ87_17835"
                     /EC_number="1.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF009725.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008802 - betaine-aldehyde dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019285 - glycine betaine biosynthetic
                     process from choline [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="betaine-aldehyde dehydrogenase"
                     /protein_id="HEY5446288.1"
                     /translation="MLIGKPKTYRTEGGKAAHNKEHYMSSAQPVENNTPQKYQLFIDG
                     QWVDAESGKTFTTPNPATGETLAEVAEADKADIDKAVVAARKAFEGKWSKISARDRGR
                     LLYKLSQLIEEHSTELAALETADNGKPIKESMYVDLPQVVENFEYFAGWATKIEGETI
                     PVPGKMFNYTLREPIGVCGQIIPWNFPLLMAAWKLAPALAAGNTVVLKPAEQTPVGAM
                     ELAKLIQEAGFPEGVVNVVPGYGETAGAALASHPGIDKVAFTGSTEVGKLIAKAAANN
                     LTKVSLELGGKAPNIVFADSNMDQAVAGAMMGIFYNQGQVCCAGSRLFVEETVKDEFL
                     SKLSERAERIAVGDPMDKGTQMGPQVSEEQLNRIKGYVDIARNEGASVISGGSSPNLD
                     EKFQKGYFFRPTIFADVNNKMRVAQEEIFGPVVSVISFKDEDDLLKQANDTIYGLSAG
                     IWTQDITRAHRFAQEIKAGVIWINTYNMFNAASPFGGYKQSGYGREMGRHALDLYTQV
                     KSVWVDLSGRPIGWFGK"
BASE COUNT          520 a          473 c          546 g          467 t
ORIGIN      
        1 gctttgccgc atcctttgcg gaatgcctct ggctttccga gtagagacta attatgaccg
       61 gcgtggggtg agcctcacgt tgatatttgg aagatgctga tcggtaagcc aaagacttac
      121 cgaacggaag gcggcaaagc cgctcataac aaggaacact acatgtcatc tgcacaacca
      181 gttgagaaca acactccaca gaaatatcag ctcttcatcg acggacaatg ggtcgacgct
      241 gaatcaggta agactttcac aacaccaaat ccagccaccg gcgaaacact cgcggaagta
      301 gccgaggccg acaaggccga catcgacaaa gctgtcgtcg ctgctcgcaa agccttcgag
      361 ggaaagtggt cgaagataag tgcgcgtgac cgcggacgtc ttctctacaa actctcccaa
      421 ctaattgaag aacattcgac agagcttgct gctttggaga ccgccgacaa cggcaaaccg
      481 atcaaggaat cgatgtacgt cgatcttcct caagttgtag agaacttcga atactttgct
      541 ggttgggcca caaagatcga aggtgaaacg attcccgtcc cgggaaaaat gttcaactac
      601 acgctaagag aaccaatcgg cgtttgcggt cagatcatac cgtggaattt tccattgttg
      661 atggccgcct ggaaacttgc accggcgctc gccgccggaa ataccgttgt gctcaagccg
      721 gcagaacaaa ctccggttgg tgcgatggaa ctcgcgaagt tgattcagga agctggtttc
      781 cctgaaggcg tcgttaatgt tgtgccgggt tatggtgaaa ctgccggtgc cgccttggcc
      841 tcacatccag gcatcgacaa ggttgctttc actggttcca cagaagttgg caagttaatc
      901 gctaaagctg cggctaacaa tctgaccaag gtatcgctcg aacttggtgg taaggcgccg
      961 aacatcgtct ttgctgattc aaacatggat caggctgtag caggcgccat gatgggaatc
     1021 ttctacaacc aaggtcaggt ttgttgtgcg ggctcacgtc tgtttgttga agagacagtg
     1081 aaggacgaat tcctttcgaa gttgtcggag cgggcggaac gcattgcggt tggtgatccg
     1141 atggacaaag gaacccagat ggggccgcaa gtttcggaag aacaactgaa tcgaatcaaa
     1201 ggctatgttg acattgccag gaacgaggga gcgtcggtta taagtggagg ctcatcgcca
     1261 aacctggatg agaagtttca gaaaggctac ttcttccgac caacgatctt cgcagatgtg
     1321 aataacaaaa tgcgcgtggc gcaggaagaa atatttgggc ccgttgtatc ggtgattagc
     1381 ttcaaggacg aagacgatct actcaagcaa gcgaacgata cgatttacgg attatcggcg
     1441 ggcatttgga cgcaagacat cacgcgtgcc catcgttttg cccaggagat caaagcgggc
     1501 gtaatttgga tcaataccta caacatgttt aatgcagcgt ctccttttgg tggttacaaa
     1561 cagtccggct atgggcgtga aatgggtcgt cacgccttgg acctgtacac gcaggtgaaa
     1621 agcgtttggg ttgatctttc cggccggcca attgggtggt ttggaaagta gtgagctagc
     1681 cacagatagt cacggataac acggatcaga aatgagttct tatttgattt gtgtttatct
     1741 gtcgaatctg tggcaagttc ggctggtgct cgtttttgca ggcatcgcgt taacgcgtag
     1801 tgtcatccct ataactctcc cacgatgaac gccacacatt taaggagaca ctatgctagc
     1861 aatcagaaag atcgctgccc ttgcggtcat tcttggtggg acgcttttga tgaccgcctg
     1921 tcccagtcag accaccgtct caaagatcaa ttcagatccg ggtcgattta gaggtaaaga
     1981 ggtcggaata gttggtcggg taaccg
//
LOCUS       DATCGC010001870         1489 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_258641, whole genome shotgun sequence.
ACCESSION   DATCGC010001870 DATCGC010000000
VERSION     DATCGC010001870.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1489)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1489)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1489
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258641"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(170..>1489)
                     /locus_tag="VIJ87_17840"
     CDS             complement(170..>1489)
                     /locus_tag="VIJ87_17840"
                     /inference="COORDINATES: protein motif:HMM:NF015140.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007154 - cell communication [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Calx-beta domain-containing protein"
                     /protein_id="HEY5446289.1"
                     /translation="GFANVATDASCSGSFTLMVTNAAITGSVVTATATDPNGNTSEFS
                     SCVPLGVPATNLVQFSAPTFNVTEACTSIALTVNRSGDTSGAATVKYTTADGTATERR
                     DYITAIGTLSFAPGESSKNVVALINDDSYVEGPETFTVTLSNPTSVNLGATTVATVQI
                     ADNATEPATNVNDNPQTFVCQHYHDFLNREPDPSGLNFWTNEITSCGADAACIEVKRN
                     SVSTAFYVSIEFQQTGYLVERLYKAAYGDFIGPSTLGGTHFLPVPIVRYSEFLPDTQQ
                     IGSGVIVNQGNWQQQLEDNKNAFAAAFVQREQFAAAFPASLTPAQFVDKLFQNTFVTP
                     STAARNAAINEFGGAPDTSNLAARGRSLRDVAENSTFNNQEFNRAFVLMQYFGYLRRN
                     ANDAPDGDFTGYDFWLTKLNQFNGNVLNADMVKAFITSGEYRNRFAP"
BASE COUNT          357 a          368 c          402 g          362 t
ORIGIN      
        1 gacaattcga atcataaagg tctttgctat ttcgaagtac tcgtcgttca cagcaccctc
       61 cgatcagccg ccgaaataac acgtggaaca aagaggcgca aatataagaa agagagagga
      121 gccgggcccc tctctcttat tttactcacc caaataggac ttcgtgtttt tagggcgcaa
      181 agcgattgcg atattcgcca gaggttatga aagctttgac catatcggca ttcaaaacgt
      241 tgccgttgaa ttggttgagc ttggtcagcc agaaatcata gcctgtaaag tcaccatccg
      301 gagcgtcgtt ggcgttccgg cgtagataac caaagtactg catcaacacg aacgcgcgat
      361 tgaattcctg attattgaac gtagaattct cagcaacgtc gcgcaaggat cgtccccgtg
      421 ccgcgagatt gctcgtatca ggcgcacctc caaattcatt gattgctgcg ttacgcgccg
      481 cagtggatgg cgtgacgaag gtattctgga aaagcttatc cacaaactgt gcgggtgtta
      541 atgaggctgg aaacgctgcc gcgaactgtt ctcgctgcac aaacgcggca gcgaatgcat
      601 tcttgttgtc ctctaactgc tgttgccaat tcccctggtt cactattact ccactaccga
      661 tctgctgagt atctggcagg aactcgctgt aacgcacaat tggcacaggt aggaaatgcg
      721 ttcctcccag ggttgaaggt ccaatgaagt ctccgtaagc agctttgtag agacgctcga
      781 ccaggtagcc agtttgctga aactcgattg aaacataaaa cgccgtcgac acactgttgc
      841 gcttgacctc gatgcatgca gcgtcagcgc cacatgaagt gatctcgttg gtccagaaat
      901 ttagaccact cgggtcaggt tcgcggttca gaaagtcatg atagtgctgg cagacgaagg
      961 tctgcgggtt gtcattgacg ttcgtcgcag gttcagtcgc attgtcggcg atttgcaccg
     1021 tggcaaccgt agtcgcgccc aggttgactg aggtcggatt actcaaggtg acagtgaatg
     1081 tctcgggtcc ttccacataa gaatcgtcgt taatgagcgc gacgacattc tttgaggact
     1141 cgccaggagc gaaagagagc gtaccaattg cggtgatgta gtcccggcgt tcagtggcag
     1201 tcccgtccgc ggtcgtgtac ttcactgttg ccgcgcctga tgtatcgccg ctgcggttaa
     1261 cggtaagtgc gatagaggtg caggcttcag tcacgttgaa agtgggagcg ctgaattgaa
     1321 ctagatttgt ggctggtact cccaagggaa cacacgaaga aaactcagaa gtgtttccat
     1381 tcggatcggt tgcagttgcg gtgacgactg atccagtgat cgctgcgttt gtcaccatga
     1441 gcgtgaagct tccactgcac gatgcgtcag tggctacgtt cgcaaatcc
//
LOCUS       DATCGC010001871         1776 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_194957, whole genome shotgun sequence.
ACCESSION   DATCGC010001871 DATCGC010000000
VERSION     DATCGC010001871.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1776)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1776)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1776
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_194957"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1391
                     /locus_tag="VIJ87_17845"
     CDS             <1..1391
                     /locus_tag="VIJ87_17845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446290.1"
                     /translation="DPTLRAPYTVNWNLGFQREVWNNGVIEARYVGTQTHLAWRTSNL
                     NEINIFENGFLQEFKNAQSNLAINAAAGSTGFANQGRPGQVALPIFDAAFGPRGALAA
                     IAAASGYTNSAFITNLQNGEAGALANTLATNQNYVCRMFGNSFSPCTRVLPTANAPGV
                     YPINFFMLNPFVAGRMNYVDDTGWHSYNGLQLQFRQRFTHGLNWNANYTWSNSLTNLP
                     ADNANQGIDFLTLRNTDLDKRPSQFDIRHVVQTFGTYDLPVGRGRMFNIDNKYLNGAI
                     GGWTVGSIFVFATGQPIQLTGGFQTVNTSNSTGAQGVVLAPGVTLAQIQKLFDAPLTR
                     LTGRPAGTFTDLQRLAVDPSLVGPDFRANPAFIIPNRTPGSFGQQLFIRDKNTFQWDM
                     SITKTFRIVESTRLEVFASMINVLNHPRWSFSPDTTGNPPAALNVFSTSFGVLGGPAG
                     SRTINLRATLSF"
     gene            1489..>1776
                     /locus_tag="VIJ87_17850"
     CDS             1489..>1776
                     /locus_tag="VIJ87_17850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446291.1"
                     /translation="MRDQSKFLFSYYKLALFVLLLLSSTPADSQSTFDLKLAAGAIVS
                     LRRAGDSFPTEYIQNNRRLGDVSLRYRGKDGAWQSVDTTQLANDGKVVLTNS"
BASE COUNT          435 a          473 c          451 g          417 t
ORIGIN      
        1 tcgatccaac gttgcgtgca ccttatacag tgaattggaa tcttgggttt cagcgtgagg
       61 tctggaacaa cggcgtgatc gaagctcggt atgtcggaac gcaaacccat cttgcgtggc
      121 gcacgagcaa cctaaacgaa ataaatatct ttgaaaacgg gttcctccag gaattcaaaa
      181 acgcgcaaag caatttggcg atcaacgcag ccgcgggatc aacgggcttc gcgaaccagg
      241 ggcgaccagg acaagtcgcg cttccgattt tcgacgccgc ctttggtcca cgcggagcgc
      301 ttgccgccat cgccgcagct tccggttaca cgaattcggc gttcatcaca aacctgcaaa
      361 atggcgaagc tggagcgctg gcaaacacgc tggcaacaaa ccagaactac gtgtgccgca
      421 tgtttggcaa ctccttcagc ccgtgcacga gagttctgcc aactgctaac gcaccaggcg
      481 tatatccaat caacttcttc atgctgaatc cgttcgttgc tggtcgtatg aattatgtag
      541 acgacacagg ttggcatagt tacaacggac tccagcttca gttccgtcaa cgcttcaccc
      601 atggtctaaa ctggaatgca aactacacct ggagcaacag cctgactaat cttccggctg
      661 acaatgcgaa tcagggtatc gacttcctga cgctgcgtaa cactgatcta gacaaacgcc
      721 catcacagtt tgatattcgg catgtcgtgc agacttttgg cacttacgat ctgccggtgg
      781 gtcgcgggcg aatgtttaat atcgacaaca agtatctgaa tggcgcgatt ggcggttgga
      841 cagttggatc gattttcgtt ttcgcgaccg gccaaccaat tcaattgacg ggaggtttcc
      901 aaaccgttaa cacgagtaac agcaccggtg cacagggagt ggtgcttgcg ccaggcgtaa
      961 ctctagcgca aatccagaaa ctatttgacg cgccactcac tcgtttgact ggtcgtccgg
     1021 caggaacatt cactgatctg cagcgcttgg cagttgatcc gagtttggtc ggtccggatt
     1081 tcagggccaa tccggccttc atcattccca atcgaacacc cggaagtttt ggtcaacaac
     1141 tcttcattcg cgacaagaat acgttccagt gggacatgtc gattaccaag acgttcagaa
     1201 tcgttgagag caccaggctt gaagtcttcg cgagtatgat caatgtcttg aaccatccgc
     1261 gctggtcctt tagccctgac acgacaggaa acccgcccgc cgctttgaat gtgtttagta
     1321 cttcgttcgg agttcttggc ggccccgcag gcagtagaac aataaatctg cgcgcaactc
     1381 tcagcttctg agggaggcca ttcgttgccg acggccaggg gcccggtctg agcaattgga
     1441 ccgggcttct tgctaaagca ttctgaaacg cctgagaaag gcaacctgtt gcgggatcaa
     1501 tccaaatttc tcttctccta ttacaagctc gcgctattcg tgcttttgct tctctcaagc
     1561 acgccagctg actcgcagag tacattcgat ctaaaactag cggcaggagc aatcgttagt
     1621 ttgagacggg caggtgattc atttcccacc gagtacattc aaaacaatcg tcggctgggg
     1681 gatgtttcac ttcgatatcg cggaaaggat ggagcctggc aatctgtaga tacaactcaa
     1741 ctggctaacg acggtaaagt ggtgctcacg aatagt
//
LOCUS       DATCGC010001872         1351 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_94461, whole genome shotgun sequence.
ACCESSION   DATCGC010001872 DATCGC010000000
VERSION     DATCGC010001872.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1351)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1351)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1351
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94461"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..208
                     /locus_tag="VIJ87_17855"
     CDS             <1..208
                     /locus_tag="VIJ87_17855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5446292.1"
                     /translation="ALSALSRSREAIADEEQADRYTPDNPFYHWMIGLRLSNLGMIQL
                     AEKHFQRAIQIDPSFQARRIKSIQ"
     gene            447..1037
                     /locus_tag="VIJ87_17860"
     CDS             447..1037
                     /locus_tag="VIJ87_17860"
                     /inference="COORDINATES: protein motif:HMM:NF013736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEY5446293.1"
                     /translation="MDNQKTPDITTAKTQKLPAFVPQSEQHEEQFRAEQKRIQQMIAS
                     DAPLSEILSKLVLMIEGQSPEMICSILLLSSDGNHVRHAVAPSLPENYVKVIDGSPIG
                     PKHGSCGTAMFRGQPVIVTDIATDPLWDEYRNFAWAIGVAACWSTPIMSSKGKVLGSF
                     AMYYREPRTPNGDERHLTDVATKVAAQAIEHAARPR"
     gene            1129..>1351
                     /locus_tag="VIJ87_17865"
     CDS             1129..>1351
                     /locus_tag="VIJ87_17865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446294.1"
                     /translation="MKRIFTLIIVLFVTGFVRGDAYVAREQDPLVVNSRTIALKLENA
                     RVRVLEATLKPGDQEKLHSHPAYVIYVIEG"
BASE COUNT          351 a          345 c          336 g          319 t
ORIGIN      
        1 cgctctttct gcactgagtc gatccagaga agcaatcgca gatgaagaac aggcggatcg
       61 ctacacgcca gacaatccct tttatcattg gatgataggg ctaagattat cgaatttggg
      121 aatgattcaa ctggccgaga aacatttcca gcgcgcgatt caaattgatc cttcctttca
      181 agcgcgcagg ataaagtcaa ttcaataact aaacaccaga gctttgcctc gaaggtgacc
      241 agggcgttcg gtgcagtagc ccgactgtaa aggagggctc atcagttttt tgcggggaat
      301 cggagccctc ctttacagtt gggctactgc accgaacgct ctattcaact cttgaggcaa
      361 aggcatcacc tttgatgtcg tttgccaata acgtggcttt catttcgtca caggcgtaga
      421 atcagcgccc gaggagcgtc aaacaaatgg acaatcagaa gacaccagac attacaaccg
      481 cgaagactca aaaactccct gccttcgtcc cacaaagtga gcagcacgaa gaacaatttc
      541 gcgctgaaca aaagcgcatc caacaaatga ttgcttctga cgcaccgctg agcgagattc
      601 tctcgaagct ggtattaatg atcgaaggac aatcgccgga gatgatctgc tcgatactgc
      661 tgctcagtag cgatggcaat cacgttcgcc acgcggtcgc gccgagtctt cctgagaatt
      721 acgtcaaggt gatcgacggg agtccgattg ggccaaagca cggctcatgc ggcacggcaa
      781 tgtttcgtgg tcaaccggta atcgttaccg acatcgctac ggatccgctg tgggatgaat
      841 atcgcaactt tgcctgggct attggcgtgg ccgcttgttg gtcgactcca ataatgtcca
      901 gcaagggcaa ggtgcttgga tcttttgcga tgtattaccg tgagcctcgc actccaaacg
      961 gcgacgaaag acacctgaca gatgtcgcta caaaggttgc tgcccaggca atcgagcacg
     1021 ctgcgagacc tcgttagcgg accgatttaa agttcaagag ccgcaaaggc ataaaacggt
     1081 ttttgccctt cctaacatct ctttgtcgct aacttgggag acgaatctat gaagcgaatt
     1141 ttcaccttga taattgttct gtttgttaca gggtttgtcc gtggtgatgc gtacgttgca
     1201 cgtgaacaag atccgctcgt tgttaactca cgcaccatcg cactcaaact cgaaaacgct
     1261 cgcgtgcgtg ttcttgaggc gacactcaaa cccggcgatc aggaaaaact tcactcacat
     1321 ccggcttatg taatctacgt aattgagggt g
//
LOCUS       DATCGC010001873         1076 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_60227, whole genome shotgun sequence.
ACCESSION   DATCGC010001873 DATCGC010000000
VERSION     DATCGC010001873.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1076)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1076)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1076
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60227"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1076)
                     /locus_tag="VIJ87_17870"
     CDS             complement(<1..>1076)
                     /locus_tag="VIJ87_17870"
                     /inference="COORDINATES: protein motif:HMM:NF018877.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="AGE family epimerase/isomerase"
                     /protein_id="HEY5446295.1"
                     /translation="ISILCLCLGWVFEPTGGQNLRAVAREHVPRLQKVLSENIQDFWL
                     KNGLDREYGGYVISFDNEARMITPYTKMIVTQARQVWLHSRLARAGYKRDENLKAAAH
                     GFTFLREKMWDTRNGGFFWELDATGRPIRTNKHLYGQSFGLYAISEYALATGDSKAMD
                     WAKELFQLLESRAHDSRYTGYNEFFTADWQSVPEGTENYIARASAPVKLYNTHLHLLE
                     SITTFYRASKLPLARTRLLELIEIETNKVVRKEYPLCTDVHHSDWTPILEGDYAMASY
                     GHDLENIWLVMDACEAAGVKPEKYRTLFEGLFAYSLKYGFDNEKGGFFSGGPFNQPAT
                     NRNKVWWAQSEALVASLWMHRLTG"
BASE COUNT          254 a          291 c          260 g          271 t
ORIGIN      
        1 cgccagtaag ccgatgcatc cacaacgaag caacaagcgc ttctgactgc gcccaccaaa
       61 ctttgtttcg attcgtggcg ggctgattga atggaccgcc actgaagaat cctccctttt
      121 cgttatcgaa gccgtacttc agagaatatg cgaacaaacc ttcaaacagg gttcgatact
      181 tttccggctt cacaccagcg gcttcacagg cgtccatcac gagccagatg ttctctaaat
      241 cgtggccgta ggacgccatc gcatagtccc cttcaaggat cggcgtccaa tcactgtggt
      301 gaacgtcagt gcagagtgga tactctttcc gcactacctt gttggtttcg atctcgatca
      361 attccagtag ccgggtgcga gccaatggca atttgctggc gcgataaaac gtagtaatgg
      421 attcaagaag atgaagatgt gtgttgtaga gtttgacggg cgctgatgcg cgagcgatgt
      481 aattctcagt gccctctgga actgactgcc agtcagcagt gaagaattcg ttgtagcccg
      541 tataccggga atcgtgcgcc ctggattcga gcaattgaaa cagttccttt gcccaatcca
      601 tcgccttgct gtcgcctgta gccaaagcat attcggagat tgcatataat ccgaatgatt
      661 gtccgtacaa gtgtttgttg gtccgtatcg gcctgcctgt tgcgtccaac tcccagaaaa
      721 aaccaccgtt tcgcgtatcc cacatctttt cacgcagaaa tgtaaaaccg tgggccgctg
      781 ccttcaggtt ctcgtcgcgt ttgtaaccag cgcgcgccaa ccgtgagtgc aaccagacct
      841 ggcgcgcctg cgtgactatc attttggtgt acggcgttat cattctggct tcgttgtcga
      901 agctgataac gtatcctccg tactcgcgat caagcccatt cttaagccag aagtcctgaa
      961 tgttttctga taagaccttt tgaagtcgcg gaacatgttc tcgagcaaca gccctcagat
     1021 tttgcccacc tgtcggctcg aaaacccatc cgaggcacag acacaaaatg gagata
//
LOCUS       DATCGC010001874         1273 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_361862, whole genome shotgun sequence.
ACCESSION   DATCGC010001874 DATCGC010000000
VERSION     DATCGC010001874.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1273)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1273)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1273
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_361862"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..193
                     /locus_tag="VIJ87_17875"
     CDS             <1..193
                     /locus_tag="VIJ87_17875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446296.1"
                     /translation="ERYRTICQLANHLKREVLGSVRVMVIRPSTGFTGEKGMEINNKF
                     NTKFTFCALTSRCRPAPSL"
     gene            261..392
                     /locus_tag="VIJ87_17880"
     CDS             261..392
                     /locus_tag="VIJ87_17880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446297.1"
                     /translation="MNNNVHENFAERVHVNQQEFFSERAYYDSGAKTVWKKLSFAGS"
     gene            complement(685..987)
                     /locus_tag="VIJ87_17885"
     CDS             complement(685..987)
                     /locus_tag="VIJ87_17885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446298.1"
                     /translation="MKIATSFLAALLFTGALGSMNTAMSADGVVSKDELATGSYCNEK
                     FHAMTGRSLDSDNPVINNSGAVIDFYGPCNESPVGEDQIQDQKLEAQHRFTTNYED"
BASE COUNT          334 a          312 c          333 g          294 t
ORIGIN      
        1 cgaacgctac cggacaattt gccagttagc gaaccattta aaacgagagg tcctggggtc
       61 agtcagggtc atggtcattc gaccttcgac gggcttcacc ggcgagaagg ggatggagat
      121 aaacaacaag ttcaacacga aatttacttt ctgcgcacta acctcgcggt gccgacccgc
      181 tccatcgctt tagggggcac accgcttttt gtcgaatggc ggagaaagac aggatacgta
      241 cttatggagg catcagtatc atgaataaca atgtgcacga aaacttcgca gagcgagttc
      301 acgtaaacca gcaggagttc ttttcggaaa gggcttacta cgacagtggc gcgaagacag
      361 tttggaaaaa actttccttc gccggttctt gacgacggca caaatgggac gactcctttg
      421 aatgactcga aaaatgcggc aggtttcgcc gcacgtgcga acgcgcttac tgcattcagg
      481 atttatcaga gagaagagcg agcaaaacga cggagtcgcc gttcttgagg aaagcggagg
      541 aagagtctct atcggcgaac gtcgcgtctt acagaatagg ttgcagcggg aaccttaacg
      601 aaaagactga tacttgacga tggaagcaga tggcgtagag gagggccgca gccctcctct
      661 taacattacg ccgtttacca gcaatcaatc ctcgtaattg gtcgtaaaac gatgctgggc
      721 ttctagcttt tgatcttgga tttgatcttc cccaacggga ctctcgttgc acggcccgta
      781 gaagtcgatg acagccccgg agttattgat gaccgggtta tcgctatcaa gactccgtcc
      841 cgtcatcgcg tgaaacttct cgttacagta actacctgta gcgagctcgt ctttcgagac
      901 aacgccatcc gcgctcattg cggtgttcat tgatcccagt gcgcctgtga aaagcaaagc
      961 tgccaaaaat gatgttgcga ttttcatatc tctcacctcc tttctttgca tcctgacaac
     1021 tgataacgca acgtccgtac cagccggggg catcctgccg taactgcctg atacaggatg
     1081 aattttcagt tacccggcag tgactaagag atatttgtga agagccgcga cgtgtcgaga
     1141 taccatcgaa cggcgaaatc tcagcgtcac ggatcgaaaa gagcgactag gataattaga
     1201 gttgagcgaa gcctggggtc gggcttttaa tcgtagcgta tctgtcgaat cgccaggatt
     1261 tcaagaatcg aac
//
LOCUS       DATCGC010001875         1840 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_94498, whole genome shotgun sequence.
ACCESSION   DATCGC010001875 DATCGC010000000
VERSION     DATCGC010001875.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1840)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1840)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1840
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94498"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(110..520)
                     /locus_tag="VIJ87_17890"
     CDS             complement(110..520)
                     /locus_tag="VIJ87_17890"
                     /inference="COORDINATES: protein motif:HMM:NF017345.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FdtA/QdtA family cupin domain-containing
                     protein"
                     /protein_id="HEY5446299.1"
                     /translation="MKVSECKIIDLPKIGEPSGNLTFIESTRHVPFQIARVYYLYDVP
                     GGAQRGGHAHKVVEEFLVAMSGSFDVVLDDGRDKARFHLNRSFYGLYIPRMIWRELDN
                     FSSGSVCLVLASEYYDELDYFRDYSEFKAVNVQS"
     gene            complement(517..1152)
                     /locus_tag="VIJ87_17895"
     CDS             complement(517..1152)
                     /locus_tag="VIJ87_17895"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002408090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEY5446300.1"
                     /translation="MTSTGHTSTLRKKRGFDFTTHTKFADKAQKKQIHPSAHTKGASI
                     GAGTRVWQFCIILPQARIGCDCNICAHVLIEGDVVIGDRVTIKSGVQLWDGTRIDDDV
                     FIGPNATFTNDRTPRSKTRRKLLVTRVHRHASIGANATILPGLTIGQAAMVSAGAVVT
                     RDVPDHALMIGNPARRKGWVCLCGETLRDSRLSCQCGKRYKRGVGGLAPIL"
     gene            complement(1177..>1840)
                     /locus_tag="VIJ87_17900"
     CDS             complement(1177..>1840)
                     /locus_tag="VIJ87_17900"
                     /inference="COORDINATES: protein motif:HMM:NF019615.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1698 domain-containing protein"
                     /protein_id="HEY5446301.1"
                     /translation="QRIGLMYDLANKLRKSGRLSFDVINLSGVLYHVFSPLMVLASVR
                     PLLKRNGLMIVSTNVVADSSFTMQFNNAGRLQEETNTFWYMSVPTLDYILRYLKLAPI
                     DCLYIAHRDIKSSVRYVTDVESGYLSVVCRAKDDLLPAGEDDWMRKSAQQSWEYAGLI
                     NWDFCTRQAVTQAPYSVTIENDLLRDDTGTIDLLKALPMRTIHEAQRSSDTHVLRLAD
                     KS"
BASE COUNT          450 a          494 c          459 g          437 t
ORIGIN      
        1 agttcgctac taagcagata ccaaccggaa tccatgaccc gatgccacgc ggcatcaaaa
       61 gcatccttca gttcaaggta ggtcggcttg agttccagaa aaggaattct catgattgga
      121 cgttgaccgc cttaaattcg gagtaatcgc ggaagtaatc caactcgtcg taatattctg
      181 acgcgaggac caaacaaaca gatcccgacg agaaattgtc cagttccctc caaatcatcc
      241 gcggtatgta caaaccgtag aatgagcggt tcaggtgaaa acgtgcctta tcacggccgt
      301 catcgagcac aacatcgaag ctgccagaca tggcaacgag aaattcctcc acgaccttgt
      361 gcgcatgtcc gccacgctga gccccgcccg gcacatcgta caggtagtaa acacgcgcga
      421 tctgaaaagg aacgtgccgg gtcgattcga taaacgttaa attgccgctc ggctcgccga
      481 tcttcggcag atcgataatc ttgcattcac tgactttcat aaaataggtg ctagcccgcc
      541 gacgccgcgt ttgtaccgct tcccacattg gcagctaagg cggctgtccc gaagagtttc
      601 accgcacaaa caaacccatc ctttgcggcg agctggattt ccgatcatca atgcgtgatc
      661 aggaacgtct cgcgttacga cggcaccggc agaaaccatt gcagcctggc caatagttaa
      721 gccaggcaga atcgtggcgt tggcgccgat tgaagcgtgt ctgtgcacgc gagtaactaa
      781 cagcttccgc ctggttttcg atcgaggagt cctgtcgttt gtaaaggtag cgttagggcc
      841 aataaacacg tcatcgtcga tacgagtgcc gtcccagagt tgaacacccg atttaattgt
      901 gacccggtcg cctatcacga cgtcgccctc gattagcacg tgagcgcaga tattgcagtc
      961 gcagccgatg cgcgcctgcg ggagaatgat gcaaaactgc cagaccctgg tgcctgctcc
     1021 aatgctcgct ccctttgtgt gcgctgaagg atggatctgt ttcttctgcg ccttgtccgc
     1081 gaacttggta tgcgttgtga aatcaaatcc tctcttcttc cggagtgtgc tggtgtgtcc
     1141 agtcgatgtc atcagcttag gaatgcttgc tgccgatcaa gacttgtctg ccaggcgcaa
     1201 aacgtgagtg tcgctcgatc tttgtgcttc atgaattgtc ctcatgggca aagcttttaa
     1261 cagatcgatc gttccggtat catctctgag taggtcgttt tcaatggtaa cagaatacgg
     1321 ggcctgtgtt accgcttgtc gagtgcaaaa gtcccagttg atgaggccag cgtactccca
     1381 cgactgctgt gcagatttgc gcatccaatc atcctctccc gcgggtagaa gatcatcctt
     1441 agctctgcag acgacggaga ggtaacccga ctcgacgtcg gtcacgtacc tgacggacga
     1501 tttgatatcc cgatgcgcaa tgtataagca gtcaatcggc gccaatttca ggtacctaag
     1561 gatgtagtcc agagtgggga ccgacatata ccagaaagtg tttgtctcct cttgcagacg
     1621 acctgcgtta ttgaattgca tcgtaaagga gctatcggca acgacgtttg tcgacacgat
     1681 catcaagcca ttcctcttca gcagcgggcg aacgcttgct aataccatga gtggcgaaaa
     1741 tacgtgatac agcactccgg aaagattaat cacatcaaag ctgagccttc ctgattttct
     1801 cagtttattc gccagatcat acatcaagcc aattcgctga
//
LOCUS       DATCGC010001876         1070 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_29670, whole genome shotgun sequence.
ACCESSION   DATCGC010001876 DATCGC010000000
VERSION     DATCGC010001876.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1070
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29670"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1070)
                     /gene="mraY"
                     /locus_tag="VIJ87_17905"
     CDS             complement(<1..>1070)
                     /gene="mraY"
                     /locus_tag="VIJ87_17905"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR00445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008963 -
                     phospho-N-acetylmuramoyl-pentapeptide-transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEY5446302.1"
                     /translation="YILYELIYNHFKEKDWFLVKGLNVFQYVTFRTAYATVTALLISL
                     FFGGKLIEALKRWNIGQQIREEGPQDHMVKRGTPTMGGVLIIGSVAISTLLWARLSSV
                     YMWTAVIATLLFAAIGFADDYAKMAKKQSLGLTGKQKLIAQFLIAAGVWGVLFISTKF
                     WASDYSWNVSIPFLKFTADPNGKTFIGPYLYLALIVIVLLGSSNAVNLTDGLDGLAIS
                     VTFIAMTALTGFTYLSSDLRWARYLDLTHRPEAAELTVFCGAMAGASLGFLWYNAPPA
                     EVFMGDVGSLAIGGAMGTVAVLTKQEFMLLMVGGVFVIEATSVMLQVGVFKMTRRTTG
                     TGRRLFKMTPLHHHFEMGGWKEP"
BASE COUNT          286 a          309 c          247 g          228 t
ORIGIN      
        1 ggctccttcc aacctcccat ttcgaagtga tggtggagcg gagtcatctt aaatagacgg
       61 cgcccggtcc ccgtcgtgcg cctggtcatc ttgaagacgc caacctgaag catcaccgaa
      121 gtcgcttcaa tgacaaaaac cccgcccacc atcaacaaca tgaattcctg tttcgtcagc
      181 acggccacag tgcccattgc gccgccgatc gcaagactgc caacatcacc catgaacact
      241 tccgcaggtg gcgcgttgta ccagagaaac ccgagactcg ccccggccat cgctccacaa
      301 aaaactgtca actcggccgc ttctggtcga tgcgtcaggt cgagatatct cgcccaacgt
      361 aaatcgctgc tcaaataggt gaaccccgtc aacgcggtca tcgcgataaa ggtgacacta
      421 attgcaagac catcaagtcc atcggtcagg tttacggcgt ttgacgatcc gagtaagacg
      481 atgacgatca acgcaagata aaggtagggg ccaatgaaag tcttaccatt cggatcagca
      541 gtgaacttca gaaacggaat actcacgttc catgaatagt cactcgccca aaacttcgtc
      601 gaaataaata gaacacccca aacaccggca gcgatcaaaa actgcgcgat cagcttttgc
      661 ttacccgtca atcccaggct ttgcttcttc gccatctttg cgtagtcgtc agcaaaacca
      721 atcgcggcga acaagagagt ggcaatcacg gctgtccaca tgtatacgct ggagagcctg
      781 gcccaaagca aagttgaaat tgctactgat ccgataatca gcacgccgcc catcgtcggt
      841 gtgccacgct ttaccatgtg gtcctgcggg ccttcctcgc gaatctgctg accgatattc
      901 catcttttca acgcttcgat cagcttgccg ccaaagaaga gagaaattag tagcgcggtg
      961 acggtcgcgt atgccgtacg aaacgtgacg tactgaaaaa cgttgaggcc ttttacgaga
     1021 aaccagtcct tctctttgaa gtggttgtaa atcagctcgt ataagatgta
//
LOCUS       DATCGC010001877         1409 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_293766, whole genome shotgun sequence.
ACCESSION   DATCGC010001877 DATCGC010000000
VERSION     DATCGC010001877.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1409)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1409)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1409
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293766"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..190
                     /locus_tag="VIJ87_17910"
     CDS             <1..190
                     /locus_tag="VIJ87_17910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446303.1"
                     /translation="QFFNWFLGCAMIYGALFGIGKLIFKEWLPGLLYLVIAIAAGVLI
                     SWNLSRVGWKTVGEAPSD"
     gene            221..1192
                     /locus_tag="VIJ87_17915"
     CDS             221..1192
                     /locus_tag="VIJ87_17915"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEY5446304.1"
                     /translation="MNKQNGSNPKLVFAADLGGTHLRGALVDERGKIHVQLKHETPQG
                     DSPDYVVDALVDAASECERRLGTDHINASSILVPGTLDPKAEIVLQAPNLKSLNHFAL
                     KAALEAKFRLPVLLENDANAAAVGEMWLGAARGARNIICITLGTGVGGGIILDGKLWR
                     GTDGCAGEIGHTTVDPFGGPKCKCGNFGCLEMYASATAMVRMTREDLDRFPNSILQGQ
                     SLTAKTIYDAGKAGDELALETFRKVGDYLGVGLANLINLLGPEVIVIGGGVANAWDLF
                     EGHMLEQIRSRAFPSLSQHVKIKPAECGDNAGLLGAAQLAFTNRGLN"
BASE COUNT          311 a          340 c          405 g          353 t
ORIGIN      
        1 tcagtttttt aactggtttc tcggctgtgc aatgatttac ggtgcactgt ttggcattgg
       61 gaaattgatc tttaaggagt ggttgccggg tttactatac ctggtcatcg cgattgcagc
      121 cggagtgctg atatcttgga acctatcacg tgtcggatgg aaaacagttg gagaagcacc
      181 ttctgattaa ccaatctgac cattgtctcc ccggagtgta gtgaataaac agaacggatc
      241 gaacccaaaa ctggtgtttg ccgcagacct cggcggcacg cacctacgtg gtgcgctagt
      301 tgatgagcgt ggcaaaatcc acgtgcaact taagcacgaa actccgcagg gcgactcacc
      361 tgattacgtt gtagatgctt tagttgatgc tgcctcggag tgtgaacgtc gacttggtac
      421 agatcacatc aacgcttcgt cgattctcgt acccgggacg cttgatccta aagccgagat
      481 tgtcctccag gcgccaaatc taaagagtct taatcacttc gccttgaagg cggcgctcga
      541 ggcgaagttt cgtctgccgg ttcttttaga gaatgatgcg aatgctgctg cggttggcga
      601 gatgtggtta ggtgcggcgc gtggggcgcg caacattatt tgcatcacgt tgggaacagg
      661 agtcggaggc ggcatcatcc tcgacggaaa gctatggcgc ggaactgatg gttgtgctgg
      721 cgaaattggg catacgacag ttgatccgtt cgggggcccg aagtgcaagt gcggaaactt
      781 tgggtgcctc gagatgtacg catcagcgac tgccatggtg cgaatgacgc gcgaggattt
      841 ggatcgcttt ccgaactcga ttttgcaggg tcagtctttg acagctaaaa cgatctatga
      901 cgctggtaag gctggtgacg agctcgctct tgagacgttt agaaaggtcg gcgactatct
      961 tggtgttggc ctcgcgaacc tgatcaatct actcggaccg gaagtgattg tgataggtgg
     1021 cggagtagcg aacgcgtggg acttatttga gggtcacatg cttgagcaga ttcgtagtcg
     1081 agcgtttccg tcattgtctc aacacgtaaa gatcaaacct gcagagtgcg gcgataatgc
     1141 gggtctgctt ggcgctgccc agttggcgtt cacgaaccgc gggttgaatt agtcgctgct
     1201 gccctgattc cattatcccg ccaaattcag attcatcgct ccacattcag tctatccctc
     1261 tgcatttcga attaccgcga agcggttacg tctcaaagcc cagggttgcc gagttttgcg
     1321 gcaaccctgg gtagaaggat gtttcagcca ccaaccccaa cggggttgcg accaccgccc
     1381 atattcacaa tcgaggccgc agatctcga
//
LOCUS       DATCGC010001878         1573 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_328395, whole genome shotgun sequence.
ACCESSION   DATCGC010001878 DATCGC010000000
VERSION     DATCGC010001878.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1573
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_328395"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..344
                     /locus_tag="VIJ87_17920"
     CDS             <1..344
                     /locus_tag="VIJ87_17920"
                     /inference="COORDINATES: protein motif:HMM:NF015639.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HEY5446305.1"
                     /translation="RVRSRKLTDAKLRARQAQGKIRRFVNTNFRKQETINSLALRRGE
                     CNRCGACCELVFKCPFLKKSADGSSLCGIYENRPNSCRLFPIEQRDIQEVRGTCSYYF
                     IEKPVRLGRTG"
     gene            486..>1573
                     /locus_tag="VIJ87_17925"
     CDS             486..>1573
                     /locus_tag="VIJ87_17925"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: protein motif:HMM:NF002223.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004019 - adenylosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HEY5446306.1"
                     /translation="MSKVIAVIGAQWGDEGKGKIVDLLAEQFEIVVRYQGGHNAGHSV
                     QVGDQSFVLHLLPSGIVHRGKTCVLGNGMVIDPKAFFVEADRLIEQGIEVSPERVKIS
                     SRAHLILPYHRALDHTSEERLGNEKVGTTLRGIGPAYEDKAGRRGIRTADALVPDVLK
                     SRIERNLEDANRIIEAYGGAPLDANEIFDEMSALTERLAPFIADTTHYLNVAATEGRS
                     ILLEGAQATLLDVDHGTYPFVTSSTTIAGGAIIGTGLAPTRLTGVLGIVRTYTTRVGE
                     GPFPTEMLEGEEELGQLIRERGREYGASTGRPRRCGWFDAFATRYAAEINGFTSVALT
                     KLDVLDTLDEIKVCVGYKLDGKTCDSLPA"
BASE COUNT          387 a          417 c          416 g          353 t
ORIGIN      
        1 tacgtgtgcg ttcgcgcaag ttgactgatg cgaaacttcg tgcgcgccag gcccagggaa
       61 agattcgtcg cttcgttaat acaaacttcc gtaagcagga aacaatcaac tcactcgctc
      121 ttcgtcgtgg cgaatgcaac cgctgcggtg cgtgctgtga gctggttttt aagtgtccgt
      181 tcttgaagaa gagcgccgat ggctcgtcgc tatgtggcat ttacgaaaac cgtcccaact
      241 cctgccggct gtttcccatc gagcaacgcg acattcagga agtaagagga acgtgtagtt
      301 actatttcat cgagaaacca gttcgactgg ggcgaacggg atagatttgt acttggtgct
      361 ttgtactttg tactttgttc gctaatcaag atcgtcgtaa atacacaaac aaagcacaaa
      421 gctctaagca caaagatcta agcaggtaca aagcacagaa agctagctca cagattagga
      481 aatctatgtc gaaggtcata gcagtaatcg gcgcccagtg gggcgacgaa ggaaaaggca
      541 agatcgtcga tttgctcgcc gagcagtttg agatcgttgt tcgttaccag ggtggacaca
      601 acgccggtca ctcggtacag gttggcgatc agtcgttcgt gcttcatctc ttgccttccg
      661 gcatcgtgca tcgcggcaag acgtgtgtac tcggcaatgg catggtgatc gatccgaagg
      721 ccttctttgt cgaagccgat cgactcatcg agcaaggcat cgaagtttcg ccagaacggg
      781 tgaagattag ctctcgggca cacctgatac tcccctatca ccgcgctctc gatcacacca
      841 gtgaagaacg acttggcaac gaaaaggtcg gcacaacgtt gcgcgggatt ggtcctgctt
      901 atgaagacaa ggccggacgg cgcggcattc gcacagctga cgcactcgtt cccgatgttc
      961 ttaagtcgcg aatcgagcgc aatcttgaag acgccaatcg aatcatcgaa gcgtacggtg
     1021 gtgctccttt agacgcaaac gagatcttcg atgaaatgtc ggcactaacc gaacgtctcg
     1081 cgcccttcat cgccgataca acacactatc taaacgtcgc agccactgaa ggtcgatcga
     1141 ttcttcttga aggtgcacaa gccacattgc ttgacgtcga tcacggaact tatccattcg
     1201 tgacttcatc aacgaccatc gccggcggag cgatcatcgg aactggcctc gctccgacac
     1261 gtctaacagg agttctcggc attgtacgaa cctacacaac acgcgtcgga gaaggaccat
     1321 tcccaactga gatgcttgag ggtgaagaag aacttggaca gctgattcgc gaacgaggtc
     1381 gcgagtatgg ggcgtcaacc ggtcgcccgc gacgttgtgg ctggtttgac gccttcgcca
     1441 ctcgttacgc tgccgagatc aatggcttca cttcagtagc gctcactaaa ctcgacgtgc
     1501 tcgacaccct cgacgagatc aaggtgtgcg ttggttacaa gttggatggc aaaacttgcg
     1561 actcactccc ggc
//
LOCUS       DATCGC010001879         1267 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_158318, whole genome shotgun sequence.
ACCESSION   DATCGC010001879 DATCGC010000000
VERSION     DATCGC010001879.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1267)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1267)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1267
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158318"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            93..1223
                     /gene="gcvT"
                     /locus_tag="VIJ87_17930"
     CDS             93..1223
                     /gene="gcvT"
                     /locus_tag="VIJ87_17930"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: protein motif:HMM:NF001567.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004047 - aminomethyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HEY5446307.1"
                     /translation="MINVTSPAPQLKQTPLNRVHRQLGGKMVDFGGWDMPVQYPAGTI
                     EEHLRTRNHSGLFDVSHMGEIDVKGSDAIAFVNRITSNDVTKLIDGQAQYSALTTPDG
                     TVIDDLLVYRFAADHLFLVVNAGTTEKDWEWIRSHHAGESVELKNVSTEYCQIALQGP
                     DALSILQQLTDVPLNDIKYYHFTTGTVDGVESIISRTGYTGEDGFEVYAAAEKGEQLW
                     NKMLEVGKVGTETGVLPCGLAARNTLRLEAGMSLYGHEIDETTTLLEANLGWICKLDK
                     GEFIGREKLAQQKEAGLKRRLVGFEITERGIARDDQEVVIGDQRVGKVTSGSPAPYLK
                     KNIGFAYVPAEFAAVGGEIKIDVRGRLVGAQIVKTPFYKRAR"
BASE COUNT          327 a          292 c          344 g          304 t
ORIGIN      
        1 gtcgcttgac gcaccgcacg tcgcatgcta gtttgcggct tcacctgtta tttgtgattc
       61 aatcgacgtg agatcaaaat caggtccacg tggtgattaa tgtgacttct ccggcgccac
      121 aactaaagca gactccgctc aatcgtgttc accgccaact cggtggcaag atggtcgact
      181 ttggcggttg ggatatgcct gttcaatatc cggctggcac tatcgaggaa catctgcgca
      241 cgcgaaatca ttcgggtctc tttgatgttt cccacatggg tgagattgac gttaagggat
      301 cggatgcgat cgccttcgtt aatcgaatca cttccaacga cgttacgaag ttaatcgatg
      361 gccaagccca gtactccgca ttgacgactc ccgatgggac cgtaattgac gatctgctgg
      421 tctatcgttt cgctgcagac catttgtttc ttgtagtcaa tgccggcacc actgagaaag
      481 actgggagtg gatcaggtcg catcatgccg gtgaatctgt cgagctaaaa aatgtcagca
      541 ccgagtactg tcagattgca ctgcaaggtc cggatgccct ctcgattctt cagcaactga
      601 ctgacgtgcc gctaaacgac attaagtatt accactttac aacgggcacg gttgatggag
      661 tcgaaagcat catctcccgc accggttata ccggcgagga tggttttgaa gtctatgctg
      721 ccgcagaaaa aggcgagcaa ctttggaaca agatgctaga ggtgggaaaa gtcggaactg
      781 aaactggcgt gctcccttgt ggacttgccg cgcgcaacac gctgcggctt gaagcaggaa
      841 tgtcgctcta tggacacgag attgacgaga ctacaacgtt actcgaagca aatctcggtt
      901 ggatttgtaa gctagataaa ggcgaattca ttgggcggga gaaattagct caacagaagg
      961 aagctggact caaaagacgt ctcgtcggat ttgaaataac ggagcgcggc attgcgcgag
     1021 acgatcagga agttgtcata ggagatcagc gtgtcggcaa ggtaacttca ggaagtccgg
     1081 cgccttatct caaaaagaat atcgggttcg cttatgttcc agcagagttt gcagctgtgg
     1141 gtggagaaat caagatcgat gtgagaggtc gattagtcgg cgctcaaatt gtgaagacac
     1201 cattctacaa gcgtgctcgg tgaaacattc aggatttaga aactaaccct tagttggagg
     1261 aaccatg
//
LOCUS       DATCGC010001880         1061 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_258779, whole genome shotgun sequence.
ACCESSION   DATCGC010001880 DATCGC010000000
VERSION     DATCGC010001880.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1061)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1061)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1061
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258779"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1061
                     /locus_tag="VIJ87_17935"
     CDS             <1..>1061
                     /locus_tag="VIJ87_17935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446308.1"
                     /translation="EAMHALIDLRYQGVPVGSVLPIPFFENVLPGIAGTFSVLGVNRT
                     LTATQSAYRRIALPSVGGTNVTDYTFLQSNARWDDKPFSIFNNTFVNPQYAALNTWST
                     FGYSNYNSAQVSVRQRLSNDVVFDFNYTLSHSLDDASGLQNAGNFAAASLIYNPLNPE
                     LNYANSDFDIRHNITSNWLVGLPFGRGKKIFSDAGKWVNGVIGGWDLTGIFRWNSGLP
                     AGRPFANQRWATNWQSSSGMVSVRPVSTSPGDFNGEPNLFADPQATFLSYRDPMPGEA
                     GDRNVLRAPGYFTLDAGLHKTFRMPWEGHALTFRWEVFNVTNTQRLTGFNATGLTVDP
                     FIIGGQAPVGFGNMTATQAP"
BASE COUNT          237 a          280 c          267 g          277 t
ORIGIN      
        1 gaagcgatgc atgcgctgat tgatctcagg tatcagggcg tgccggttgg ttctgtattg
       61 ccaattccat tcttcgaaaa cgttcttccg ggaatcgccg gcaccttttc agtgctgggt
      121 gtgaaccgaa ctctgacggc aactcaaagt gcttatcgtc gtatcgcttt gccttccgtt
      181 ggcggaacca acgtaactga ctacacgttc ctccagtcga atgctcgttg ggacgacaag
      241 ccgttttcca tcttcaacaa cacgttcgtc aacccgcaat acgccgcgct caatacctgg
      301 tcgacgtttg ggtattcgaa ctacaactcc gcacaagtga gcgtgcgaca acgtttgtcg
      361 aacgatgtag ttttcgattt caactacacg ttgtcacact cgctcgacga tgcatctggt
      421 ttacagaacg ctggaaactt tgcagcggca tcgttgatct acaacccgct caatcccgag
      481 ctcaactacg cgaactcaga tttcgacatt cgtcacaaca tcacctcgaa ctggctcgtt
      541 ggcttgccat ttggcagagg caagaagatt tttagcgatg ctggaaagtg ggtaaatgga
      601 gtaatcggcg gttgggatct gactggtatt ttccgttgga actctggttt accagcgggt
      661 cgtccgttcg cgaatcagcg ttgggccacc aactggcagt cgtcttctgg aatggtttca
      721 gttcgtccag ttagcacctc tccgggtgac tttaatggcg aaccaaatct attcgccgat
      781 ccgcaggcta cgttcttgag ttatcgagat ccgatgccag gtgaagctgg tgatcgaaat
      841 gttctacgtg ctccaggtta cttcacactc gatgcgggtc tgcacaagac atttagaatg
      901 ccctgggaag gacatgcact aacgttccgt tgggaagttt tcaacgtaac caacacccag
      961 aggttgaccg gattcaacgc cactggtctt actgtggatc cattcatcat cggcggtcag
     1021 gctccagtcg gtttcggcaa tatgactgcg acgcaggcac c
//
LOCUS       DATCGC010001881         1318 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_492440, whole genome shotgun sequence.
ACCESSION   DATCGC010001881 DATCGC010000000
VERSION     DATCGC010001881.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1318)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1318
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_492440"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(239..1009)
                     /locus_tag="VIJ87_17940"
     CDS             complement(239..1009)
                     /locus_tag="VIJ87_17940"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY5446309.1"
                     /translation="MATATDRQKIAKENFTIPDAGERKVTLLVVEDDENISTAISEYF
                     TRAGYNVKTVEDGLNGVKAALDDPPDAVVLDLMLPKMDGLAVCKELREKVGYLPILML
                     TAKDDVVDKVLGLEMGADDYITKPFSLRELEARIKSVLRRTRTGPTPDGIRDEAPIVR
                     GRLRIDSAKREVTIGERQVELTPKEFDLLRLFASNPGRVFPRKYLLEKIWDYSYEGYD
                     RTIDSHINRLRAKIEENPENPQMVLTVWGIGYKFSDEQ"
BASE COUNT          310 a          316 c          335 g          357 t
ORIGIN      
        1 ctgtccacga gccaggacaa ttgggacgac aataagcaac agggctgcga ggagatgaag
       61 acagagcttt atcctgtggg atcgtttaag aatttgatag caaggttgag agttcttcat
      121 ttgaagtaac gagaggcaag gcctcccctg ggaaggaccc ttttagaact ggccagttgt
      181 tggcttggat ttgccctgat ctggcgaggg taatgcggga tttgaggtaa gacggcgact
      241 attgctcgtc gctaaattta tatccaattc cccaaacggt tagcaccatc tgcgggtttt
      301 ctggattctc ctcgattttg gctcgaaggc gattgatgtg cgaatcaatt gtcctgtcgt
      361 aaccttcata ggaataatcc cagatctttt caagcaaata cttcctggga aacactcggc
      421 ctggattcga ggcgaaaagc cgaaggagat caaactcttt gggtgtgagc tcaacctgac
      481 gttccccaat tgtcacttcg cgtttggctg aatcaattct caatctaccg cgaactatgg
      541 gagcttcgtc gcggattccg tcgggagtag gacctgtgcg agttcgacgc aggaccgatt
      601 tgatccttgc ctcgagctca cggagactaa agggtttggt gatgtaatca tccgcgccca
      661 tctccagtcc caacaccttg tcaactacgt cgtctttcgc tgtgagcata agaatcggta
      721 agtagccgac cttttctcgc aattccttac acacagctaa accgtccatc ttcggcaaca
      781 taaggtcgag aacaacagcg tctggtggat catccagggc tgctttcaca ccattgaggc
      841 cgtcttcgac ggttttgacg ttgtaacctg cgcgagtgaa atactcgctt atcgcagtcg
      901 agatgttctc gtcatcttcg acaacaagca gagtgacttt tctttcacct gcgtcaggta
      961 tcgtaaagtt ttccttagcg attttctgtc tgtcagtagc tgtggccatc agaattttcg
     1021 tgtctgaact gacaagcagg aggctcaaga gggtacgcgc caattggggc taacgcgact
     1081 cgggtcaaat ggatagtaca agaggagtag gccttggttc aagccctaag ttttagttac
     1141 gtgaaccaaa gccctttaga ttggagatat tggatggatc acacgggatt tcatagtctc
     1201 gttttctcgg cgccggtgag tgattttttt aagcgctctc tgaactgcga gagcgatccc
     1261 gcatactgcc gacttgtgcc atcctttgtc atcctctcaa gaagttctac tccgcgag
//
LOCUS       DATCGC010001882         1827 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_293807, whole genome shotgun sequence.
ACCESSION   DATCGC010001882 DATCGC010000000
VERSION     DATCGC010001882.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1827)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1827)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1827
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293807"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(15..722)
                     /locus_tag="VIJ87_17945"
     CDS             complement(15..722)
                     /locus_tag="VIJ87_17945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446310.1"
                     /translation="MRATQLISVLFALVFVTAIAAQRKTGTADQWKMEFDVSPADFSS
                     TGRNPYFILEPGYKLVLANGKERLAITVLKETRLIDNVETRVVEERESNNEQLVEVSR
                     NYFAISKKDNSVYYFGEDVDIYKNGKVLSHEGSWLAGTNGAHYGMMMPGTPAVGAKYY
                     QEICPSIAMDRAEIVSIDEKRTTSAGSFEKVLKIAETSPLEPKTVEFKYYAPEVGLIQ
                     DGSLKLERYGSGLPAGS"
     gene            complement(765..1361)
                     /locus_tag="VIJ87_17950"
     CDS             complement(765..1361)
                     /locus_tag="VIJ87_17950"
                     /inference="COORDINATES: protein motif:HMM:NF016176.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HEY5446311.1"
                     /translation="MLKRSVSILLLLSITIAAQVSTGKPYPIDLNHSNVGFTVPIMGG
                     LSKVKGKFSDFAINLTNDEKDITKSSVSVTIKATSVDTGIEGRDKHLRTADFFDVEKF
                     PEITFQSSSIEKKGKQLIAHGTLTMHGVAKEIALPFTVTGVSESADKTKKNVGYSASI
                     VLNRRDYGINYTHKTIPNFIGDNITVEIDLITRAIDTK"
     gene            complement(1468..>1827)
                     /locus_tag="VIJ87_17955"
     CDS             complement(1468..>1827)
                     /locus_tag="VIJ87_17955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446312.1"
                     /translation="DNVRFTRQLVSDLKLNLEKFIVAQKPYMERRSYATFRKLWPEKD
                     VIVTSPQTSLEEYLRSYSHSSLSQADVIGIMLGDLQRIKLYPAMGFQIEQEIPAETWA
                     AYDELVAAGFTKYLIQT"
BASE COUNT          414 a          464 c          431 g          518 t
ORIGIN      
        1 ctattgtcta cgcatcaaga tcccgcaggc aggccggagc cataccgttc cagcttcaac
       61 gatccatctt gtatcagacc tacttcgggt gcgtagtatt tgaactctac agtcttgggt
      121 tctaagggcg aagtctctgc aatcttcaat accttctcaa aactgccggc ggacgtcgtg
      181 cgtttctcat cgatgctcac aatctctgct ctatccattg ctattgaggg acaaatttcc
      241 tggtagtact tcgcaccaac ggctggcgtg cccggcatca tcattccgta gtgagcccca
      301 tttgtaccgg ccagccatga accttcatga cttagaactt tcccattctt atagatgtcg
      361 acgtcttcgc cgaagtaata cacactgttg tccttcttac tgatcgcaaa gtaattccgg
      421 gagacttcaa caagttgttc gttattcgac tccctttctt cgacgacacg cgtttcgacg
      481 ttgtcaatca acctggtttc tttcagaact gtgattgcca gccgttcttt accgtttgca
      541 aggaccaact tataaccggg ttcgagaatg aagtagggat tcctaccggt ggatgaaaag
      601 tcagccgggc tgacgtcgaa ctccatcttc cactggtccg ccgttcctgt tttacgttga
      661 gcggcaatag ccgtcacaaa caccagagcg aagagcaccg atataagctg tgttgctctc
      721 atacgcatta ctcctcaaag gaccaagacc aaaagcccaa gtccctactt ggtatcaatc
      781 gctctcgtaa tcaaatcgat ctcgacggta atgttatcgc cgatgaagtt gggaatggtc
      841 ttgtgagtgt agttgatgcc gtagtctcga cggttcagaa ctatactcgc cgagtagccg
      901 acatttttct tggtcttgtc cgcgctctca ctcacgccgg taacggtgaa gggaagtgct
      961 atctctttcg cgacgccgtg catggttagc gttccatggg cgatgagttg tttgcctttc
     1021 ttctcgatgc tcgagctctg aaaagtaatc tcgggaaact tttcaacatc gaagaagtca
     1081 gcggtgcgca aatgtttgtc ccgaccttca atgccggtat ccacgctggt cgctttgatg
     1141 gtcacactga ctgacgactt cgtgatgtct ttctcgtcgt tcgttaaatt tatagcgaag
     1201 tcactgaatt tccctttcac tttcgacagg ccacccatga taggtaccgt gaagcccacg
     1261 ttcgagtggt tcagatcaat gggatacggt ttaccggtgc tgacttgagc agcaatggtg
     1321 atggaaagca agagaagaat cgaaactgat ctttttagca tgatggggct cttttctttg
     1381 gtcttgggtt tttggtcttt ggccttagga tcgtagtcat ctgcccttgt tcccacaaag
     1441 accaaagacc aaagtccaaa gaccgtttta agtttgtatc aggtatttag taaatccagc
     1501 cgctactaat tcgtcgtatg ccgcccaggt ctcggcggga atctcttgtt caatctgaaa
     1561 gcccatcgct ggatacagct taattctttg cagatcacca agcatgatcc cgattacgtc
     1621 ggcctgagac agcgaactgt gactgtagct ccggagatat tcctcgagcg aagtttgtgg
     1681 cgacgttacg atcacgtctt tctcgggcca gagcttgcgg aacgtggcgt agctgcggcg
     1741 ctccatatag ggcttttgag cgacaataaa cttttccagg tttagcttga gatctgaaac
     1801 tagctgtctc gtaaagcgga cgttgtc
//
LOCUS       DATCGC010001883         1559 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_60333, whole genome shotgun sequence.
ACCESSION   DATCGC010001883 DATCGC010000000
VERSION     DATCGC010001883.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1559
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60333"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(76..717)
                     /locus_tag="VIJ87_17960"
     CDS             complement(76..717)
                     /locus_tag="VIJ87_17960"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF012521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEY5446313.1"
                     /translation="MSLTLFFLRHGQTELSRDDTFCGSGLDPQLTDDGLRMAQVFAAK
                     YKHTKWDAIYSSKLKRTITTASPLVEAVQLQLRTRSELNEIAYGKWEGLTKEKVNEEF
                     HDDYIKWLADPAWHAPTNGETAIAIARRGMELIEEIREECSDGNVLIVSHKATIRIIL
                     CALLGIDVGRFRYRLVCPVGSVSIVEFTNEGPLLHALADQSHLTDELRALPGT"
     gene            1363..>1559
                     /locus_tag="VIJ87_17965"
     CDS             1363..>1559
                     /locus_tag="VIJ87_17965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446314.1"
                     /translation="MRQVILLFAVLLTAQITFAQSTFRATVKDQETKLPVVGATVSVK
                     ASGLSATTDNNGVAELTNIPNG"
BASE COUNT          381 a          415 c          372 g          391 t
ORIGIN      
        1 cgggctactg caccgaggct actgcaccga gggctactgc cccgagggct actgcaccga
       61 ggctactgca caggattagg tacccggtag cgcccgcagt tcgtcagtta agtgtgactg
      121 atcagctaat gcgtgaagca acggcccttc atttgtaaac tcgacaatgc tgactgaacc
      181 aaccggacaa acgagtcgat agcgaaatcg tccaacgtcg atgccaagca acgcgcagag
      241 aattatcctg atcgtcgcct tgtgagaaac aatcaagacg tttccatcac tacactcttc
      301 acgaatctcc tcaatcaact ccattccgcg tcgcgcaata gctatcgccg tctcgccatt
      361 ggttggcgca tgccatgcag gatctgcaag ccacttgatg tagtcgtcgt gaaattcctc
      421 gttgaccttc tctttggtca agccttccca tttaccataa gcaatctcat ttagttctga
      481 tcgggttcga agttgtaatt gaacagcctc gaccaaaggc gacgcggtcg tgatggtgcg
      541 tttcagcttg ctcgaataga tcgcgtccca cttcgtgtgt ttgtatttcg cagcaaacac
      601 ctgcgccatg cgaagaccgt cgtcggttag ttgcggatct aaaccagagc cacagaacgt
      661 gtcgtcacgg ctaagctcag tttgcccgtg acgaagaaag aacagtgtta atgacattga
      721 ttgaattcta ccaagtggca cacccttcag tctgtgtttg ttaatgagca tgaatcttag
      781 aacacagact gaagtctgtg ccacttgagg agttcccgaa aaaagccgat aacctgattg
      841 gcacaatgtc tggtgcggtg ccagttatca aagtggccaa ttccaaacgc ccaagctata
      901 gttcagtcat gctcaggcaa cgaacaatgg ttgagcgaat aatcggtgca attcttcccg
      961 tctgcttagt ttggttattc gcgacctgtg ttttcatctg cgggttacat tgcgcagaat
     1021 cagacgaact gtctttggct tccgcggttg gtggtgcgat tgccttagat cagaatagcg
     1081 attgtgacga gtgtccaatc aatgccattc cagtcgtgac aacccaggat cgaacaagcc
     1141 gcgacgtcta ttttcaaatg cccggagttc ttagcggctt gtttttgtca ccggactctt
     1201 tggttcagcg cccgactata gtcacccaat caagctattc attatctgcc gaccctccac
     1261 tgaaatccct acctggacta cgcatctagt cccgccgcat atcagtaatt catcacttcc
     1321 gctttcgcgt aacaaactcc gcgctcgggg cgacgaggtc tcatgagaca agtaatcttg
     1381 ctgtttgctg tccttctgac agctcaaatc acatttgcac agtcgacgtt tagagcgacg
     1441 gttaaagatc aagagaccaa gctgccagtc gttggcgcaa cagtgtcggt aaaagcttcg
     1501 ggtctaagcg cgaccacgga taacaatggt gtcgcagagt tgacgaacat cccgaacgg
//
LOCUS       DATCGC010001884         2048 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_362012, whole genome shotgun sequence.
ACCESSION   DATCGC010001884 DATCGC010000000
VERSION     DATCGC010001884.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2048)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2048)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2048
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_362012"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1146
                     /locus_tag="VIJ87_17970"
     CDS             <1..1146
                     /locus_tag="VIJ87_17970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446315.1"
                     /translation="DPRGGGNPSTVGGLSQLQIDFRIPSNLTEAQFKALGLVVTGVDP
                     DLKAFQQRELTFGFEREFRTNYVLSARFTRKNVAHAQEDHAILGLNQAENYPVGNPGE
                     GLDLKLDQQNGTARSARPQRLYRALELVLNKRLSNNYYFNANYTLGYLYGNYSGLASS
                     DENGRTSPGVDRFFDYPINGFTATGQPDNGYLATDRRHSFKAYGGYSFDRWRSKGHTD
                     DLSFFYTAMQGTPQTTFITVVATSIPLIKRGDLGRTPAFTQTDLSWTHRYRFGNDGNY
                     SLAFDFNVLNVFNQNTVTSFTTSRYRTTNTIGATDIDPAYVASTQTLIPILNRILNGQ
                     IGTQLTQLENGGLPSLTGRPNPHSSLYGQPSGYQGIRNVRFGLRFQF"
     gene            complement(1426..>2048)
                     /locus_tag="VIJ87_17975"
     CDS             complement(1426..>2048)
                     /locus_tag="VIJ87_17975"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5446316.1"
                     /translation="IVSGVIFVQDVPPAARTAYLKGVGDFEKNQEQGLAEIEEALRIF
                     PNYFEALNWVGKELISARQYEKGYPYLLRAIDINSRSPETYYSLGFAFYQMKKYPAAL
                     EAVKATTTLAPASIDAHLLYGTILRITGNYAEAETALLKANSFAKKTNAEVHWQLSLL
                     YNRLKRNEDTITELETFLKLVPDSPDKNRIKDMIAKLKDSANNTKQ"
BASE COUNT          519 a          511 c          500 g          518 t
ORIGIN      
        1 gatcctcgag gcggcggcaa tccttcaacg gtagggggat taagtcagtt acaaatcgac
       61 ttccgtattc cctcgaactt gaccgaagcg cagttcaagg ctcttggact ggtggtaacc
      121 ggtgtcgatc ctgacttgaa agccttccag caacgtgagc tgacattcgg attcgaaaga
      181 gagtttcgca ccaattatgt tttgtcagct cgttttacgc gcaagaatgt tgcgcacgcc
      241 caggaagacc acgccatatt gggattgaac caggcggaga actatcccgt cggcaacccc
      301 ggcgaaggct tggatttgaa actcgatcag cagaacggaa cggcgagatc ggccagacca
      361 caacgcttgt atcgcgctct tgaactagtg ctcaacaagc ggctctccaa caactactac
      421 ttcaatgcga attatacgtt ggggtatttg tatggtaact attcggggct ggcgagttcg
      481 gacgaaaacg gacggacttc tccgggtgtt gatcggttct tcgactatcc gatcaatggt
      541 ttcacggcga ccggccaacc tgataatggt tatctagcga ccgaccgtcg tcattcattc
      601 aaggcctacg gtgggtactc cttcgaccgg tggagaagca aaggacacac agatgatttg
      661 tctttcttct acacggcgat gcagggaaca ccccagacga cctttatcac tgtagtcgca
      721 acttcaattc ccttgatcaa gcgaggcgat ttgggaagga ctccagcctt tacgcagacg
      781 gacctttcct ggacgcaccg ttaccggttt ggtaatgacg ggaattactc gctggcgttc
      841 gactttaatg tcctgaacgt tttcaaccag aatacggtta ccagttttac gactagcagg
      901 tacaggacca cgaacacaat tggggccacc gacattgacc ccgcgtacgt ggcatccact
      961 cagacgttga ttccgatttt gaacagaatt ctgaacggac aaatcggaac gcaacttaca
     1021 caactcgaaa atggaggtct tccgagttta actgggagac caaatcccca tagtagtctt
     1081 tacggacaac cttccggcta tcagggtatc cgtaacgttc gatttggact gcgattccaa
     1141 ttctaattga atcgcaactt gcaacactga aagcctgctc tcatcgggag caggctttct
     1201 tgtgttattg ctgacctcta ataagaaagc gcggagagaa aaaacacggc aaatcgaggc
     1261 ggaacacttc tactagctct tggatcaaag agctggacgc cacctcatat gcggttgggc
     1321 catgctaagg cgtgctgagg aaagataagc attcagtctt cggtcgccag ttaggttgaa
     1381 cccgggccac tcccgagaaa acagcactac taaaactcgg aatccttatt gcttagtgtt
     1441 gttggccgaa tcctttagtt tggcaatcat gtctttgatc ctattcttat cgggggagtc
     1501 cggtacgagt tttagaaacg tctcaagctc ggtgatggtg tcttcattgc gtttgagtct
     1561 gttatagagc agagacagtt gccagtgaac ttcggcattc gtcttcttgg caaaagaatt
     1621 agctttcagc aaagcagttt ccgcttcggc atagttccca gttattcgca agatcgttcc
     1681 atataacaaa tgcgcgtcaa ttgaagcagg ggccagggta gtggttgcct tgactgcctc
     1741 taaggctgcg ggatacttct tcatctgata aaaggcaaag cccaagctgt aataggtctc
     1801 aggactacgt gagttaatat caatggcgcg caacaggtac ggataacctt tttcatattg
     1861 cctggccgag ataagttctt taccgaccca gttcagggct tcaaagtagt tcggaaaaat
     1921 ccttagagcc tcttcaattt ccgccagtcc ctgctcttga ttcttctcaa aatcacccac
     1981 gcctttgaga tacgctgttc tcgctgccgg gggaacgtcc tgcacaaaaa ttactcccga
     2041 gacaatat
//
LOCUS       DATCGC010001885         1562 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_158409, whole genome shotgun sequence.
ACCESSION   DATCGC010001885 DATCGC010000000
VERSION     DATCGC010001885.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1562)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1562)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1562
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158409"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(48..653)
                     /locus_tag="VIJ87_17980"
     CDS             complement(48..653)
                     /locus_tag="VIJ87_17980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446317.1"
                     /translation="MGLLRKFETSLALLSLFAGVAFLLIMCHMSFAFNCVFGIVFLTL
                     FYLYVRGRHKINLPVSLLALVFVALQVDALGNLFGMYGTQFGPFQYDEFAHMTVQLLV
                     TPIIVWLVQHALVKWGHNLPLSLTAFFAGTMVFSLSAFYEIIELWDELYFHPHRIWGA
                     LDTATDLQFDMCGIVIGTLLACVLLKTKQTTTKSDLIESRA"
     gene            726..1496
                     /locus_tag="VIJ87_17985"
     CDS             726..1496
                     /locus_tag="VIJ87_17985"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR00121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004077 - biotin-[acetyl-CoA-carboxylase]
                     ligase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HEY5446318.1"
                     /translation="MNPFKPKILRYESLPSTNDEAARWAAQGAEEGLAVVAEEQTAGR
                     GRLQRTWVSPKGAGLYCSVLLRPKISQERWPLITFVGVLSVSDSLSEACGLKTDIKWP
                     NDLLASERKICGILAEVIDTEMGRAIVLGMGINVTNEAFPPELTSVAISVEEATGQRY
                     EKSSILHALLKALRRWYPLLQEIDGDQKILAEWSSRSSYAEGKLVKVVNGAETFTGIT
                     RGLEPDGALRLEAETGAVMVVRAGDVVNLRAEVQTRGL"
BASE COUNT          417 a          376 c          436 g          333 t
ORIGIN      
        1 ctagccgcca aaagagtcgc gcgctagact gaaagcggca aagccgctca cgcgcgggac
       61 tcaatcaaat cggacttggt tgtagtctgt ttcgttttca atagcacgca cgccaacaac
      121 gttccgatca cgattccgca catatcaaac tgcaagtcag tggcagtatc tagagccccc
      181 cagatgcggt gagggtgaaa gtagagttcg tcccacagtt caataatttc gtaaaacgcc
      241 gacaggctaa agaccatcgt gccggcgaag aaggcagtta acgaaagcgg caaattgtgt
      301 ccccacttca cgagcgcgtg ctgaacaagc cagacaatga tcggtgtgac gagcaattgc
      361 accgtcatgt gtgcgaactc gtcatactgg aacggcccaa actgggtgcc atacataccg
      421 aaaagatttc ccaacgcatc aacctggagc gccacgaata ccagggcgag aagtgaaact
      481 ggcagattga tcttgtgacg accacgaaca tacaaataaa agagcgtcag aaaaactatt
      541 ccgaagacgc aattgaaggc gaaggacatg tggcacatga tcagcagaaa agccacaccc
      601 gcgaagagcg ataacaaagc tagagatgtt tcgaactttc ttagcaagcc cattcttgtc
      661 gatcctctgt gacgatgcga cgctggttaa tcgttccgat tgaagcttac aatcgccacc
      721 ggtctatgaa cccattcaaa ccaaagatcc ttcgttacga atcccttcct tcaaccaatg
      781 acgaagcagc acgctgggcc gcccagggag cggaagaagg actggctgtc gttgccgagg
      841 agcaaacggc gggccgtgga cgtttacaac gtacttgggt ttcaccaaaa ggtgccgggc
      901 tctattgctc ggttctgctg cgaccaaaaa tctcgcaaga acgttggcct ttgattactt
      961 ttgtcggcgt gctctccgta agcgattcgt tgagcgaagc ctgcggtttg aaaactgaca
     1021 tcaaatggcc gaatgatctt cttgcaagtg aaagaaaaat ctgcggcatc ctggcggaag
     1081 taatcgacac tgaaatgggg cgggcaattg tgctgggaat gggaatcaac gttaccaacg
     1141 aagcgttccc cccggaactg acaagcgttg ccatctccgt ggaggaagcg accggacagc
     1201 ggtacgagaa gagttcgatt ctccatgcgt tgttgaaggc cttgagacgt tggtatccgt
     1261 tgcttcaaga aattgatgga gaccagaaga ttctggcgga gtggtcgagt cggtcgtcgt
     1321 acgccgaagg gaaactggtc aaagttgtaa atggagctga aacgtttacg ggaattacgc
     1381 gaggattgga gccggacggc gcgttgcgtt tggaagctga gacaggagcg gtaatggtgg
     1441 tgagggctgg agacgttgtt aacttaaggg cggaagtaca gactcgaggg ttatgaaacc
     1501 gagcgcacct ctgctgtctt ctctgtgcgt tctctgggtt ctctgtgcct ctgtggttaa
     1561 cg
//
LOCUS       DATCGC010001886         2062 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_127080, whole genome shotgun sequence.
ACCESSION   DATCGC010001886 DATCGC010000000
VERSION     DATCGC010001886.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2062)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2062)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2062
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127080"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..987
                     /locus_tag="VIJ87_17990"
     CDS             <1..987
                     /locus_tag="VIJ87_17990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446319.1"
                     /translation="DYVDSKASIIVSDTPPPAPLDNMLWWESDTGTLYVRYNDGTGAQ
                     WVQAVATPVLDTSALVKKAGDTMSGNLSIAPALGSSTLSLVAQQAAQQVKVDFHQGGA
                     VKWQVGKQTDDSFFIYGVTASKYGFHIDPNTALVDVNADPTAALGIATKQYVDVKTSN
                     RQRFTLDGLNLVDIPVPANAVAAKLSGSAYFTGAGTYPLIQLSVSAGVFLNAAGNYAF
                     SGNQFTSNPATWVYYNVNATLPGFFLLQTQDNSQLPFTWDGFMQVKRKTTGHFFSGDF
                     ISRGYNNTSGHGTFTFNNRTQPGSGLSVLAIRFLLYGGTLFDTNSVLIVEWL"
     gene            987..1847
                     /locus_tag="VIJ87_17995"
     CDS             987..1847
                     /locus_tag="VIJ87_17995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446320.1"
                     /translation="MALNFPSSPTVGDLYPTPAQVGVPQYRWDGTAWIAQAVANAPTY
                     VLKAGDTMTGQLIINYVSPHLILQRTAVGELASVTSMIGALPRWDVAIGDTAPESGGN
                     VGSNFGIHYFNDAGTYVGQALGISRADGLVILKGNPTGPLHAATKQYVDAAVSSFPVG
                     TLMLFQQSAAPTGWTKQTTHNDKALRVVSGTAASGGTYTFSSMFAAVSTQGATLDGNT
                     MAAHAHQTYGYTLNPGGGPGGFHHEPSDGNGLNAYGAVYDVSAGAGGAHAHGLNLSVL
                     YVDLIIASKN"
     gene            1847..>2062
                     /locus_tag="VIJ87_18000"
     CDS             1847..>2062
                     /locus_tag="VIJ87_18000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446321.1"
                     /translation="MDTEKPRASGTLKCPLWQKPMKLVCHTCALWVHVRGKHPQSEEL
                     VDHWNCALAWMPMLMIENSQQQRATGAA"
BASE COUNT          495 a          491 c          531 g          545 t
ORIGIN      
        1 gattacgttg atagcaaggc ctcgatcatc gtaagcgaca ctcctccacc ggctccactc
       61 gacaacatgc tttggtggga aagcgacaca ggaacgcttt acgtccgcta caatgatggg
      121 actggagcac agtgggttca ggcggttgcg acaccagtgc ttgatacgtc ggcccttgtc
      181 aagaaggccg gtgatacgat gtcgggcaac ttatcaattg ctcctgccct tggttcatca
      241 actctttcat tggttgcaca gcaagccgca caacaagtaa aagttgactt ccatcaaggt
      301 ggtgctgtta agtggcaagt tggtaaacaa accgatgata gctttttcat ttatggtgtt
      361 acagcatcaa agtatggatt ccacattgat ccgaatactg cattagtcga tgttaacgct
      421 gatccgacag cagcgcttgg catcgctacc aagcaatacg tcgatgtcaa gacatcgaac
      481 agacaacgct tcactttgga tggacttaac ttagttgaca tcccagttcc cgcgaatgct
      541 gttgcagcga aattaagtgg ttcagcttat tttacgggag ccgggacgta tcctctgata
      601 cagctgagtg tttcagctgg agtgtttctg aatgcagcag gtaattatgc ttttagtggg
      661 aatcagttta cttccaatcc cgcaacttgg gtctattata atgttaatgc tactcttcct
      721 ggtttctttc ttctacaaac ccaagataat agtcaacttc cttttacctg ggatgggttt
      781 atgcaggtga agagaaaaac aacaggacat ttcttttcag gtgattttat atcgagaggt
      841 tataacaata caagcgggca cgggacattt actttcaata accgaactca gccgggttcc
      901 ggtcttagtg tcttagctat tcgttttctg ctgtatggcg gcaccctctt cgatactaac
      961 agtgttctca ttgtggagtg gctgtaatgg cactcaactt cccatcttca cctacagtcg
     1021 gtgatttgta tccgactcca gcacaagtgg gcgtgccaca gtataggtgg gatgggacgg
     1081 cctggattgc tcaggcggta gcgaatgcgc cgacttatgt cttgaaggcc ggcgacacta
     1141 tgactggcca acttataatt aactatgtca gcccacacct tatattacag agaacagcag
     1201 taggagagtt agctagtgtc acctctatga taggggcttt gcctcgttgg gacgtagcta
     1261 ttggtgacac cgcaccggaa agtggtggca atgttggatc aaactttggt atccattact
     1321 tcaatgatgc tgggacttat gttggtcaag cacttggaat cagtcgtgct gacgggctcg
     1381 ttattctgaa gggcaatcca actggaccac ttcatgctgc cactaagcag tatgtcgatg
     1441 ctgcggtcag ctctttccca gttggaacct tgatgctgtt tcaacagtcg gccgcaccta
     1501 caggctggac gaagcagacg actcacaatg ataaggcgct gagggttgtc tcagggacgg
     1561 cggcatcagg tggtacatac acgttttcgt ctatgtttgc tgcggtctcg acgcagggtg
     1621 ctacgcttga tggcaacacg atggcagctc atgcccatca aacttacggc tacaccttga
     1681 accccggcgg tggtcctggt ggcttccacc acgaaccttc tgatggcaac ggcctcaacg
     1741 cttacggtgc tgtctatgac gtttctgcgg gcgctggtgg agcacacgct cacggcctca
     1801 acctcagtgt tctgtacgtc gatctcatca ttgcgagtaa gaattgatgg atactgagaa
     1861 accaagagcg tctggcacgt tgaagtgtcc gctatggcaa aagccgatga agcttgtttg
     1921 ccacacttgt gcgttgtggg tccatgtgag aggaaagcat ccacaaagtg aagagcttgt
     1981 cgatcactgg aattgcgcgc ttgcttggat gccgatgctg atgatcgaga actcacaaca
     2041 acagagggcg accggagccg cg
//
LOCUS       DATCGC010001887         1253 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_492518, whole genome shotgun sequence.
ACCESSION   DATCGC010001887 DATCGC010000000
VERSION     DATCGC010001887.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1253
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_492518"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(539..1006)
                     /gene="greA"
                     /locus_tag="VIJ87_18005"
     CDS             complement(539..1006)
                     /gene="greA"
                     /locus_tag="VIJ87_18005"
                     /inference="COORDINATES: protein motif:HMM:TIGR01462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0070063 - RNA polymerase binding [Evidence
                     IEA];
                     GO_process: GO:0006354 - DNA-templated transcription
                     elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HEY5446322.1"
                     /translation="MSQEIKEKLQGQLDELESELRVHLPKEIKRALEFGDLRENSEYK
                     AALERQNMVKARIVELRQRISEIASIDPNKVPRDRASYGSTLVLYDAEKDEEVTYRLV
                     SPEESDPANGMISTTSPVGKSLMNKQEGDEVVVRTPASTRNFEIRKMKTLHDD"
     gene            complement(1067..>1253)
                     /locus_tag="VIJ87_18010"
     CDS             complement(1067..>1253)
                     /locus_tag="VIJ87_18010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446323.1"
                     /translation="LANGKSGVMVALQAGDVVTVPLSEAIKNIKTVPPNGQLVRTARD
                     TGISFGAPDEAKFHKAI"
BASE COUNT          291 a          332 c          298 g          332 t
ORIGIN      
        1 ctaaacgtcc gatgctggcg ccaaacacta ttggtaagtt tctcccggtg gcattatgcc
       61 caaaaccgcg taaagattac agtttctttc caaaaccaag cggcggatca taggtacgcg
      121 gttactcgtt gtcaattgat caaaagcccg ctcctcgtgc gttcgcagta ttcgatagcc
      181 actcgttatc tggtgtcttt aactccaaca ttgcgtccag cgaatttgag gccaaccggc
      241 ttgaggtacc gtcattgcat ttcgccatcg cgtatcgtca gaacgcgaat ctaaccaggc
      301 tacaaaagcg attagccacg cttgaatttc tgacaggtgg ttagttattc gttgtctcaa
      361 ggagcacata accttccacc aggaaagcga tgacagacgt ccccggaagc aatcaacttg
      421 aatccaaaat acgactgggc ctacgagaac cgggcagatg actacgaggc aaagggagaa
      481 acggatctga aaaaggcaga ccgtcaagtg gctgacgagc tagatcgaaa ccaccaggtc
      541 agtcgtcgtg cagagtcttc atcttacgga tttcgaaatt gcgtgtgctc gccggagttc
      601 gaaccacaac ctcatcgcct tcctgcttat tcattaaact cttgccaacc ggtgacgttg
      661 tagaaatcat tccattagcc gggtcgcttt cttccggaga aactaagcgg taggtgactt
      721 cttcatcctt ctcagcgtca taaaggacga gagtagagcc gtaagaggct ctgtcgcgcg
      781 ggactttgtt tggatcgatt gacgctattt cgctgatgcg ctggcgtaat tccacgatgc
      841 gcgccttcac catgttctga cgttcaagcg cggccttgta ttcagagttc tctctcagat
      901 cgccaaattc aagagctcgc ttgatctctt tcggcagatg aacgcgcaac tcgctttcta
      961 gttcgtccaa ttgaccctga agtttttctt ttatctcttg tgacaactct tcatcctctc
     1021 gtcgctgtat tcattggctc tcgcactgtt cagtcgtgac cagcaatcag atcgctttgt
     1081 gaaatttggc ttcgtctgga gcgccaaacg agatgccggt atcgcgagct gttcgcacga
     1141 gttggccgtt agggggcaca gttttaatgt tcttgatggc ttcactgagc ggaaccgtga
     1201 ctacgtcgcc agcttgcaat gccaccatca ctccgctctt tccgtttgcc aga
//
LOCUS       DATCGC010001888         1913 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_60391, whole genome shotgun sequence.
ACCESSION   DATCGC010001888 DATCGC010000000
VERSION     DATCGC010001888.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1913)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1913)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1913
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60391"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..656
                     /locus_tag="VIJ87_18015"
     CDS             <1..656
                     /locus_tag="VIJ87_18015"
                     /inference="COORDINATES: protein motif:HMM:NF014476.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446324.1"
                     /translation="AASAALAAEQISPNPFKGTLGVIGTGVIARTTVEWLLFRNWKFR
                     KISLYDLDRKEAEHFSKWLRDHYDLQADIQDQLEGAISDSSLILFTTTTLDPYLSDEK
                     LFEHCPTVLHLSLRDICVNVILASQNIVDDVDHCLKARTSLHLTEMATGNRDFVSGSL
                     VDVLEKKLKPDHSKPRIFSPFGLGVLDLAVGNFVLEAAKSSGAAIALPDFFSNSARW"
     gene            830..1831
                     /locus_tag="VIJ87_18020"
     CDS             830..1831
                     /locus_tag="VIJ87_18020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446325.1"
                     /translation="MGNPLNARYPTPDRSTQLAEFPDRSLAEIPCGPFPQQIIEETEE
                     DLNGFAKILEGLSITVKRPDTWQHDRKFSTIHWEAQGYYNYCPRDVLLVIGDHIIETP
                     NVIRSRAQETFGYRTLLMEYMKSGAKWYSAPKPMLLDSLFEGVDPNKPTPRNDEPAFD
                     AANVLRFGEDLIYLVSATGNELGGHWLQSILGDRYRVHFLKDVYFGSHIDSTLVALRP
                     GLVLANPARVNDDTLPKILKQWKVIYSPPMENTDRHDADYLSRSIGSDWIDMNAFSIN
                     PNLVVVDRNQPSLIKLLEKEGLDVIPLKLRHSKLLGGGPHCVTLDVRRNGTLQRYFD"
BASE COUNT          468 a          498 c          480 g          467 t
ORIGIN      
        1 ctgccgcctc tgccgcgttg gcagcagagc aaatttcccc caatcccttt aaaggaactc
       61 tcggcgtaat cggaactggc gtaatcgctc gtacaaccgt cgagtggctt ctatttcgaa
      121 attggaagtt tcgtaaaatc agtttgtacg atctggaccg caaggaggcg gagcacttca
      181 gcaagtggct tcgcgatcat tacgacctgc aggccgatat tcaagatcag ttggagggcg
      241 ccatatccga ttcttctttg atactattca ccacgactac gctggatccc tatctttccg
      301 atgaaaaact gttcgagcac tgccccactg tcctgcattt gtcgctgcgc gacatttgcg
      361 tgaatgtgat tctcgcatca caaaacattg tcgacgatgt ggatcattgc ctgaaggcaa
      421 gaacgtcgct ccatctaaca gaaatggcga cgggaaatag ggactttgtc tccgggagtt
      481 tggtggatgt tctagagaag aagctcaaac cagatcatag caagcctcgc atattttcgc
      541 catttgggct tggtgttctc gatcttgcag tcggcaattt tgtactcgag gcagcaaaat
      601 cgtccggcgc ggcaattgcg ctacctgact tcttcagcaa ttctgcccga tggtgacgaa
      661 gatgtcagac ttttcgaatt cgaaatacgt caacttcaag cgcggagcac tcgccttgtt
      721 ccgaaggatg cagggcaggg tcattctcac tcaggaacaa gcgagcgggt aaattaacat
      781 gtcaggtgta tggagttgca atgagtggga tcaactcgaa gaagttattg tgggaaatcc
      841 gctgaatgcg cggtatccta cgccagaccg aagcacccag ctcgcagaat ttcctgaccg
      901 ttcattggcc gaaattccct gcggcccttt tcctcaacag attattgaag agacggaaga
      961 ggatttaaat ggatttgcca aaatcctgga aggcttgagc atcaccgtca aacgtccgga
     1021 cacctggcag cacgatcgca aattttccac gatccattgg gaagctcagg gctactacaa
     1081 ctattgtccc cgcgatgtct tgttggtcat cggtgaccac attatcgaaa cgcctaatgt
     1141 catccgcagc cgcgcccagg aaacgttcgg ctatcgcacg ttgctgatgg agtatatgaa
     1201 gtcaggcgca aagtggtaca gcgctcccaa gcccatgctc ctggactcac tcttcgaggg
     1261 ggttgatcca aacaagccca cgccacgcaa cgatgagccg gcctttgatg cagctaacgt
     1321 cctgcgtttt ggcgaagatt tgatctatct cgtcagcgcc acgggcaacg agttgggggg
     1381 acattggctg cagtcgattc taggtgacag atatcgggtc catttcctca aagatgtcta
     1441 ttttggcagc catatcgact cgacccttgt ggccttacgc cctggcttgg tcctcgccaa
     1501 tcctgctcgt gtcaatgacg ataccctgcc caaaatcctg aagcagtgga aggtcatcta
     1561 cagtccaccg atggagaaca cagacagaca tgatgccgac tatctgtcca gatccattgg
     1621 cagtgactgg attgacatga atgcattcag catcaatccc aatttggtcg tggtcgatcg
     1681 aaatcagccg tctctgataa aactcctgga gaaggagggt cttgatgtga tccctttaaa
     1741 attgcggcac tccaaactgt tgggcggtgg accccattgc gttaccttag acgtccgccg
     1801 aaatggtacg ctacagcgat acttcgatta aacgtagtac cttcgccatg ctcaggcagc
     1861 gagcaactat aacctttgag gtcgaagacc caagcgtctt tgagaacctg gct
//
LOCUS       DATCGC010001889         1316 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_258889, whole genome shotgun sequence.
ACCESSION   DATCGC010001889 DATCGC010000000
VERSION     DATCGC010001889.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1316)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1316)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1316
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258889"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            53..1177
                     /locus_tag="VIJ87_18025"
     CDS             53..1177
                     /locus_tag="VIJ87_18025"
                     /inference="COORDINATES: protein motif:HMM:NF013044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic ring-hydroxylating dioxygenase subunit
                     alpha"
                     /protein_id="HEY5446326.1"
                     /translation="MTNQLRDLIDSYIPTDPIDHAFTIPSSWYTNNDLYNLELETVFT
                     NSWQLAARIDQLERPGQFVATDVGTEPVVIVRGADNVLRGFFNVCRHHAAAVMTEPEG
                     TVPQLRCPYHGWTYSLSGELKGTPDFNGVCNFDREKNGLAPVEIAEWENWVFVRLAKT
                     SLQLDEFLGRNLIDQITPLKLNDLHWLERRHYQFDCNWKVFVDNYLDGGYHVPYLHKG
                     LDSVLDYSNYMIENGERFCLQWSPLVSEGAETQTGAVRKGDRALYYWLYPNFMINFYD
                     GVMDTNLVIPRGVDQTEVIFDFYFPDVVSVEARSRNLASIEVGQRIQDEDVAICKSVQ
                     RGLNSRAYNAGRLSVRREAGEHLFHRLLHGDLSGAMSDML"
BASE COUNT          323 a          319 c          315 g          359 t
ORIGIN      
        1 ttgccaccct tcctagcttg ttctaactat tgaggcgtcc atactctcaa cgatgacaaa
       61 ccagcttcgc gatctaatcg acagttacat cccaaccgac ccgatcgatc acgcgttcac
      121 cattccgtcg tcctggtaca caaataacga cctttacaat cttgaactcg agacagtctt
      181 cactaattcc tggcagcttg cagcccgcat tgatcaactt gaaagacccg gtcagtttgt
      241 agctaccgat gtcggcactg agccggttgt tattgttcgc ggtgctgata atgtcctgcg
      301 cggcttcttc aatgtttgtc gccatcacgc agcggcggtg atgactgaac cggaaggaac
      361 ggtgcctcaa ctacgctgcc cttatcacgg gtggacctat tctctatctg gagaactaaa
      421 gggcacgccg gactttaacg gcgtctgcaa cttcgatcgg gaaaagaatg gactggctcc
      481 ggtagaaatc gcggaatggg aaaactgggt gtttgtgaga ctggcaaaaa cgagcttaca
      541 actggacgag tttcttggcc gcaatctcat tgaccaaatc actccgctca aactaaacga
      601 tctccactgg ctggaacgtc gtcattatca atttgattgc aactggaaag tttttgtcga
      661 taactatctt gatggcggtt atcacgttcc ttatctgcat aaagggttgg acagcgtcct
      721 tgattacagc aactacatga ttgaaaacgg cgagcgcttt tgtttgcagt ggagcccgct
      781 cgttagtgaa ggcgctgaaa cccagaccgg cgccgttcga aaaggcgatc gggccttgta
      841 ctactggtta tatccaaact tcatgatcaa cttttacgac ggtgtgatgg acaccaacct
      901 ggtgattcca cgtggcgttg atcaaactga agtcatcttt gatttttact ttcctgatgt
      961 ggtgtctgtc gaagctcgat cacgaaacct cgctagtatt gaagtcggtc aacgaataca
     1021 ggatgaagac gttgctattt gtaaatcggt ccagcgaggt ttgaattcgc gagcttacaa
     1081 tgcaggccgg ttgtcagtaa gacgtgaagc gggtgagcat ttgtttcatc gtctgctgca
     1141 tggagatctt agcggcgcca tgtccgatat gctttagctt gtcgtgtgtc aagcaatagt
     1201 ctccgagaac taagacatga ttctcaaatt ttattgaaag cattgtctga tctgcgtctt
     1261 tctgcgttaa tctgcggctc agccttctaa cgacaacgac aaactaaagt ttatcg
//
LOCUS       DATCGC010001890         2507 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_258905, whole genome shotgun sequence.
ACCESSION   DATCGC010001890 DATCGC010000000
VERSION     DATCGC010001890.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2507
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258905"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..305)
                     /locus_tag="VIJ87_18030"
     CDS             complement(<1..305)
                     /locus_tag="VIJ87_18030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446327.1"
                     /translation="MKLRLTFVSFILLLMAMTGTGSILSRAKTNQSSPTQASTTDQNK
                     LVYADFEKVENGRPVSNAGGMIQIFTGQESTPVKFKGLANASPGAPEVVRLKDGDAN"
     gene            583..1773
                     /locus_tag="VIJ87_18035"
     CDS             583..1773
                     /locus_tag="VIJ87_18035"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family transcriptional regulator"
                     /protein_id="HEY5446328.1"
                     /translation="MRRINLKKANVARSDTIRYINRQIVLNYVREKEPISRAEISHET
                     ALQRSTVSLIVEELKNQGLIYEIEGESTGGRPPNLLKLRAAGCIAIGVDIGTAQTTVA
                     TGDLVGRVLRRETFETDPDLETTFNRIASCIKAFIVSEPTIEGIGVSLPGLVDSETGT
                     ALFIPHFKWREWAIAEELRTVTGMPVTVDNDANAAALAELWLGRPEIRDVRDFIFVLV
                     EEGLGTGIIFDGQVYHGMVGGAGEFGHMTIGKGAPVACAAGSDECWEAFASERAALAR
                     YAQKRGGAAQEDITFTRLIDYAFAGDQFARESLTETAYFLGLGISNLTKGLSPEAVIL
                     GGGIARAWPLIADELHTAIEKNSICRGLPSAVAFASTLGEDTRLMGALSLVLAGKFAS
                     VVPA"
     gene            2274..>2507
                     /locus_tag="VIJ87_18040"
     CDS             2274..>2507
                     /locus_tag="VIJ87_18040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY5446329.1"
                     /translation="MTINMYPKSKRVIINSMIRFLGAVICLAVLATAGLAQTTGSATL
                     RGSIKDPQGAIIRGATVTLTSERTKDERKTTSSD"
BASE COUNT          632 a          557 c          665 g          653 t
ORIGIN      
        1 tgatttgcat cgccgtcctt taaccgtacc acctcgggtg caccaggtga ggcattggct
       61 aaacccttga atttcaccgg cgtggattcc tgcccggtga agatctgaat catgccaccg
      121 gcattgctta caggccttcc gttttcaact ttttcaaagt cagcgtagac cagtttgttt
      181 tgatcggttg tgcttgcttg cgttggcgaa ctctgattag ttttggcgcg agacaaaatc
      241 gatcccgtgc ctgtcatcgc catcaataac aaaatgaaac ttacaaatgt gagccgtagc
      301 ttcatgattg ttctcctagc gttcatctga gaagtagagt taataccaaa cgggttcagt
      361 ttgccacatg aacgtggctt gtgattggat tactgcccgc tattttgcac tacgtgtcaa
      421 tcactcaatg gtagcgtctg cctaaattga tatggtgaag cgaaaagtga gcgagtcggt
      481 gcaaaaaaac catggcttga cgcattcccg tccaaggctt tactctccgc cgttgaaagc
      541 ctggttgtcg aacagttggt gtctggtgat tggatcaact aattgcgacg tataaatcta
      601 aagaaggcaa atgtagcccg gtcagatacg attcgttata tcaaccgcca aatagttctc
      661 aactacgttc gcgaaaaaga gccaatctca cgggctgaaa tctcccacga aacagcattg
      721 caacgttcga cggtttcact catcgtcgaa gaactcaaga atcaagggtt aatctacgaa
      781 attgaaggcg aatcgacggg aggcagacct ccgaaccttc tgaaactgcg ggccgccggc
      841 tgcattgcga tcggtgtgga cataggtacc gcgcaaacaa cggttgcaac cggtgattta
      901 gtgggaaggg tattgagacg agagactttt gaaacagatc ctgatctgga aacaactttc
      961 aatcgcatcg cttcatgtat caaagcgttc attgtcagcg agccaacgat cgagggtatt
     1021 ggagttagtt taccggggct tgttgattca gaaactggaa cggcgctttt tattccgcat
     1081 tttaagtgga gagagtgggc catcgcggaa gagttgcgaa ctgttacggg aatgccagtt
     1141 actgtagata acgacgcgaa tgctgctgcc ctggcagaac tatggctagg tcgtccggaa
     1201 attcgcgatg tgcgcgattt catttttgtg ttggttgaag aaggactcgg cacgggtatc
     1261 atttttgatg gtcaggtgta tcacggaatg gttggtggtg caggcgagtt tggacacatg
     1321 acgattggca agggagctcc ggttgcttgt gcagcaggta gtgatgagtg ttgggaagcg
     1381 ttcgcttctg agcgagccgc tctagctcgc tatgctcaaa aacgtggggg cgctgcacag
     1441 gaagacatca cctttacgcg attgatcgac tacgcatttg ctggggacca attcgcaagg
     1501 gagtcgctta ctgagactgc gtatttcctc ggcctgggaa tttcgaacct tacaaagggc
     1561 ctgagtcctg aagcggtgat ccttggtgga gggatcgcac gtgcgtggcc gttgattgct
     1621 gacgaactgc ataccgcgat cgaaaaaaac agtatttgtc gtggcttgcc ctcggcggtc
     1681 gcctttgcgt cgacattggg cgaggacact agattaatgg gagcgctgag tctggtctta
     1741 gcgggcaagt ttgcctccgt ggttccagcc taagcatcca gaaattagga aagcacccaa
     1801 aatttccaat gcttaaggaa tgctcgatct cttgtttcta atccgccgat ctcatgattg
     1861 tttaggtgtt accgttaaca cacttcagca ccggagtcgt tagatcgctc ggcactcgca
     1921 ttgctaagca gtaaatttga gatctgcaac agtctcgctc gatcaggtaa tcaagtaatc
     1981 aagtaattga aagctttaag gaaaaaactc ttgacaaaga gtgttggcag ggagtactaa
     2041 ggcttttgtc tggtcttgca acaaacccaa agttctaagt tttgattcga atataacggt
     2101 tccgaatgcg actggcttgt aataagtcat tgcaattgaa ggctcgcgag ttccgtttac
     2161 ttcagcccta actgaagtcc tagcgaggtg ttcgcaacaa gctctgttct actaatttga
     2221 agtccgtgaa gttgcttgag gtctttcctc tccgagtgga gaaggaaagg gaggtgacta
     2281 ttaacatgta tccgaagagt aagcgcgtga ttatcaactc aatgattcga tttctaggtg
     2341 cggtgatttg tttggcagtg cttgctacgg caggacttgc acaaaccacc ggtagcgcaa
     2401 cgctacgagg aagcattaag gatccgcagg gtgccatcat acgtggcgcc accgtgacct
     2461 taaccagtga acgtacgaaa gatgaacgta agacgacatc aagcgac
//
LOCUS       DATCGC010001891         1508 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_294005, whole genome shotgun sequence.
ACCESSION   DATCGC010001891 DATCGC010000000
VERSION     DATCGC010001891.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1508)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1508)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1508
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_294005"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1181)
                     /locus_tag="VIJ87_18045"
     CDS             complement(<1..1181)
                     /locus_tag="VIJ87_18045"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HEY5446330.1"
                     /translation="MSSFIKISFAFLLALLLSAITMGQSTTTGAIGGVVSNPNKEVVP
                     GAAVTVRNMETNKEDSSTSDSQGRFKVINLQPGNYAITINGAGFTAFTQDNIVVEIGR
                     ETSIEVPLSIGAVTGTVEVTADAPVINTTQQDFSSNLNQTSINELPVNGRRWSNFAIL
                     TPGAVPDGNFGLISFRGISGLLNNSTVDGGDNNQAFFSEERGRTRSAYSISQSAIREF
                     QVNTSNFAAEYGRSAGGVINAVTKSGTNEFHGSAFLYDRNNKWGARNPNTFINKLVNG
                     VSTRFALKPEDVRYQFGGTIGGPIVKDKLFFFFSYDEQRRNFPGVAVFATPGYLNTVN
                     RCASATAPGCTAALFAASLKNPARNLTDAQIDTALNFINDMTGEVPRRGDQRLFLPKV
                     D"
BASE COUNT          398 a          368 c          364 g          378 t
ORIGIN      
        1 caatcgactt ttggtagaaa gagtctttga tcgccacgtc gcgggacttc gccagtcatg
       61 tcgttaataa agttcaacgc tgtgtcgatc tgggcatcag tcaaattgcg agcaggattc
      121 tttaatgagg cagcgaacag agcagctgtg caaccaggag cagtcgcaga ggcgcaacgg
      181 ttaactgtgt tcaggtagcc aggagtggca aacactgcga ctccagggaa gttacgtcgc
      241 tgttcatcgt agctaaagaa gaagaacagc ttgtctttta cgattgggcc gccaatagtt
      301 ccaccaaact ggtagcgaac atcctcaggc ttcagagcaa atcgcgtaga gactccgttg
      361 accagcttat taataaaagt gttagggttg cgcgcacccc acttgttatt gcgatcgtat
      421 agaaaggccg agccatgaaa ctcgttcgta cctgacttcg tgacagcgtt gataacgcca
      481 ccggccgaac gtccgtactc agcagcgaaa tttgatgtgt ttacttggaa ctctctaatc
      541 gcagactgac tgatcgaata agcgctgcga gttcggcctc tctcttctga gaagaacgcc
      601 tggttgttgt caccaccgtc cacggtgctg ttgttaagca aaccggagat cccccgaaaa
      661 ctaatgagtc caaagttgcc gtccggcact gcgccaggcg tcaaaatcgc aaagttggac
      721 caacgacgtc cgttaaccgg caactcgtta attgatgttt gatttaagtt gctggaaaag
      781 tcttgctgcg tagtgttaat gacaggcgca tcggccgtga cttctacagt tccggtcacc
      841 gcaccaatcg acaacggaac ttcaatactg gtctcgcgac caatctctac aacgatatta
      901 tcctgagtaa aagcagtgaa cccggctcca ttgatcgtga ttgcatagtt tccaggttga
      961 agattaatca ctttgaagcg accttgactg tcgctggtgg aagaatcttc tttgttggtc
     1021 tccatgttgc gaacagtaac agccgcaccg ggcaccacct ctttattagg gttggatacc
     1081 acgccgccga tcgcgccggt cgtcgttgac tgccccattg tgatagcact cagcaacaat
     1141 gcgagcagga acgcaaaaga tatttttata aaactcgaca taccagggaa ctccttatga
     1201 ttgaagtgaa agttggacgc gccgttcgcg tcgcacattt gaactttgtc tcttagcagc
     1261 aggaaaagtt aacaattcaa gtgggaagaa agttggcaat gcggaaggca taacttctac
     1321 atgcctagct tgctctgagc aaagttaagt catggtcgaa gctgttaaat ctttacaatc
     1381 cttttgatca tcgataattg cacaagccat agccagcttt ttcgattgga attttcgcaa
     1441 tacccgtgcc gaataagtcg ccgcgcgaca tttcaaacaa aagctcggat taccagcggt
     1501 taacttct
//
LOCUS       DATCGC010001892         1432 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_60513, whole genome shotgun sequence.
ACCESSION   DATCGC010001892 DATCGC010000000
VERSION     DATCGC010001892.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1432)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1432)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1432
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60513"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..312
                     /locus_tag="VIJ87_18050"
     CDS             <1..312
                     /locus_tag="VIJ87_18050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446331.1"
                     /translation="ANLIDHDFPPEQRSPFVYKDRGMLATIGRAQAVAQFGPIHASGL
                     FAWLLWCVVHIFFLISFRSRFRVMSEWVWYYLTFKPGARLIFERPATTHHRPSTDHAQ
                     E"
     gene            299..955
                     /locus_tag="VIJ87_18055"
     CDS             299..955
                     /locus_tag="VIJ87_18055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446332.1"
                     /translation="MRRSESLKTAYVNEAPRSKLRGITEHSFEDFSETELNPVASYGE
                     YSSLIKFSFHIDLPSSIPVFFSLLTETPLPDTGYMRFDPALAAQEAFQQAEVELGSDW
                     DTAVDLEDTFSSNAGATAREAYEGLLTLAQHYPNAHSFQAFCIYITWQQVTEETISRH
                     FQTGITLSEAYLASLDGKDLQHIAYVTELYESFRAGLGLEEEDEIQVEFRKDTPKGGD
                     "
     gene            1185..>1432
                     /locus_tag="VIJ87_18060"
     CDS             1185..>1432
                     /locus_tag="VIJ87_18060"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5446333.1"
                     /translation="MSDNHKHRARIFLHRGDLVQARAAWEAAVADDRMADSQQALSDS
                     LGNLGNTCALMNDFPRAEQCYREVLQIQRTERNLTAVA"
BASE COUNT          342 a          402 c          358 g          330 t
ORIGIN      
        1 gccaatctaa tcgatcacga tttcccccca gagcaacgat caccatttgt ttacaaagat
       61 cggggcatgc tggctaccat tggacgggca caagccgtgg ctcagttcgg cccaatccat
      121 gcttcgggac tctttgcctg gttgctctgg tgcgtcgtcc atattttctt tttgatcagc
      181 tttcggagcc gattccgagt catgtcggaa tgggtctggt actaccttac tttcaagcca
      241 ggagcgaggt tgatttttga gcggcccgct accactcacc acagaccgtc aacagatcat
      301 gcgcaggagt gagtcgctaa agaccgccta cgttaatgaa gctccccgca gcaagctgcg
      361 gggtatcaca gaacatagtt tcgaagactt ctcggaaaca gagctgaacc ccgtagcaag
      421 ctacggggaa tattcaagtt taatcaagtt ctcattccac attgacctcc cttcctctat
      481 cccagtattc ttcagtctac tgactgagac acctttacca gatactggtt atatgcgctt
      541 cgatcccgcc cttgcagcac aggaagcttt tcaacaagca gaagtcgaac tcggctctga
      601 ctgggacaca gccgttgacc tagaggacac cttttcttcc aacgcgggag caaccgcgcg
      661 ggaagcctat gagggtttgc tgacccttgc ccagcactat ccgaacgctc actcatttca
      721 agccttctgt atctacatta cctggcagca ggttacagaa gaaacgatct cgcgtcactt
      781 ccagactggg attacactgt ctgaagctta tcttgcatca ctggatggca aagatctgca
      841 gcacatcgcc tacgtcacgg aactctatga gtccttcaga gctgggttag gattggaaga
      901 ggaggacgag attcaagttg agtttagaaa agacaccccg aaaggcggcg attaattgga
      961 atagggctga gggctgagtt aggaattttc cgacagggaa agccgatcgc tgacggtgga
     1021 aggctctgca tcggactcgt cgaagccgca atggggacag ggcatgcaca ccggtccatc
     1081 acagcagtga tagatatact cccttccaca tcgcttgcag ttcatctgcg ccattgttag
     1141 ggtctgcaca gtaccaaact ttcggcatcc tctcaagatc cgacatgtcg gacaaccata
     1201 aacatcgcgc acggattttc ctccatcgcg gcgacctggt ccaggctcgt gctgcctggg
     1261 aagcggctgt ggccgatgac cgaatggccg acagtcagca agcgctgtcg gattctcttg
     1321 ggaacctcgg caacacctgc gcgctcatga acgatttccc acgtgcggaa cagtgctatc
     1381 gggaggttct ccagatccaa cgaaccgagc gcaatctcac cgccgtagcc ca
//
LOCUS       DATCGC010001893         1426 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_60573, whole genome shotgun sequence.
ACCESSION   DATCGC010001893 DATCGC010000000
VERSION     DATCGC010001893.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1426)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1426)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1426
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60573"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            347..>1426
                     /locus_tag="VIJ87_18065"
     CDS             347..>1426
                     /locus_tag="VIJ87_18065"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY5446334.1"
                     /translation="MKRLSFKTSGMISLWCGVLLLITCCANVMAQNSTSSVNGNVVDP
                     QGNVVAGATVTLSNDQKNFTRTQTTTEAGNFAFSLIPPGQYKVETEAKGFKKAVLSDV
                     SAQVAKATTLTVQLEIGSVEEVVTVSSGAGEVLVNKQDGTLGNNFVNQQITQLPLEAR
                     SPLALVTLQPAVTREGYVAGARSDQSNITLDGVDINEAQTNSVSQPVIRLNAEAIEEF
                     RVTTVNSNAGAGRSSGAQISLISKSGSNDWHGAFFLANRNTSTTANDFFNNRAGVARP
                     KLIRNTYGGAIGGPIVKDKLFFFYSYEGRHDVSQTGVTRTVPLASLGRGELRYVNPSG
                     GITTLTTAQLNTIFPAAGINPLAVSA"
BASE COUNT          379 a          354 c          351 g          342 t
ORIGIN      
        1 gccagaaatt tggatatact ctgcctcaca gccaagttac tgcaccacgt ttccgctaaa
       61 aactcaggac tttgagacgt tttaatttac gagttatgcg cggaatagta tctgcaagaa
      121 cttgaacact gaaacgacag actggatacg agttttgtcg aacctctgcc caagatttct
      181 agagattcga atacattgaa tttcaagtca gactttctga cgaggtagag tgatccactt
      241 ctatctagca atgacaggtc tagcctttgt gacaacgagc aggcaggttt gtcagacctt
      301 cctgccttcg cctcgaattc tgcaaacaag tttctcggag gaccacatga aaagactaag
      361 ctttaaaaca agcgggatga tctcattgtg gtgcggtgtt cttcttttga ttacgtgctg
      421 tgccaacgtc atggcgcaga atagtacttc ctcggtgaat ggtaatgtcg ttgacccgca
      481 aggaaatgtg gttgcgggag cgactgtaac actgagtaat gatcagaaga atttcactcg
      541 aacccaaact actacagaag caggcaactt tgctttcagt cttatccctc ccggtcaata
      601 taaggttgag actgaggcga aggggtttaa gaaggctgtg ctttctgacg tgagcgcaca
      661 agttgccaag gcaactacct tgaccgtcca gcttgaaatc ggaagcgtgg aagaggtagt
      721 gactgtttca tcaggtgcgg gcgaggtcct ggttaacaaa caggacggca ctctaggcaa
      781 taacttcgta aatcaacaaa tcacccagtt gccgctcgaa gcccgcagtc ctcttgccct
      841 ggtaactctg caacctgcgg taacgagaga aggttatgtg gcaggagcac gaagtgatca
      901 gtcgaacatc acgctcgacg gtgttgacat caacgaagcc cagacgaact cagtctcaca
      961 gccagtaatc cggttgaacg ctgaggcgat tgaggaattc cgcgtaacca ctgtcaactc
     1021 aaacgctggc gcaggacgct cttcgggcgc acagatatca ctaatcagca agagtggcag
     1081 caacgattgg catggtgcat ttttcctggc caatagaaac accagcacta ccgcgaatga
     1141 tttcttcaac aatcgtgccg gtgtcgctcg tcctaaactt attcgcaaca cctacggcgg
     1201 cgctatcggc ggaccgattg tgaaagacaa gctcttcttc ttttatagtt acgaaggccg
     1261 acacgacgtc agtcaaacag gcgtgacgcg tacggtgccc ttggcaagct tgggacgtgg
     1321 cgaattgcgc tacgtaaatc cctccggtgg tatcacaaca ctgaccaccg ctcaattgaa
     1381 tactatcttt ccggcagccg gtatcaatcc tcttgcggta tcggca
//
LOCUS       DATCGC010001894         1536 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_328647, whole genome shotgun sequence.
ACCESSION   DATCGC010001894 DATCGC010000000
VERSION     DATCGC010001894.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1536
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_328647"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1536)
                     /locus_tag="VIJ87_18070"
     CDS             complement(<1..>1536)
                     /locus_tag="VIJ87_18070"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M1 family metallopeptidase"
                     /protein_id="HEY5446335.1"
                     /translation="NVIAKPVPVVHDGLQQPAQNPRPFPPAQYIPDHDFDTRHIALDL
                     RFDWDKEQILGRETLVFAPLVANLKTIKLDAANITPTAIKLGLGTELQFVTDVAKQKV
                     NITLDRGYQPSDQLTLTIDYHTNGPQDPSQLGLVGEGLKFLKPGADDPSRPKQIWTQG
                     ESEYNHYWFLCFDHPNDFFTSEVTATVEKPLQVISNGRLLETRENRDGTRTFHWKIDQ
                     PHASYLTSFIVGEYTPVVGDYAGIPVTTYAYPSEAAEAKLTVARLPEMVKFFSEKTGI
                     RYPYAKYAQTTVHDFGGGMENISATTQTDNMIHDARADLDQTSDGLQSHELAHQWFGD
                     YVTCRNWSDIWLNESFATYFQAMWDEYKLGSDDFLYSDIKANQDSYFSAWKQGNRRPI
                     VTKNYRDPDAVFDTYAYPRGGAVLHMLRKNLGDDNWWRAINHYLRKYANQPVETEQFR
                     IAIEESTGQSMDWFFDEWLYRMGHPIFEVTQQYDDATKSLQLTVRQLQTKDPDSQYPQ
                     VGF"
BASE COUNT          360 a          368 c          394 g          414 t
ORIGIN      
        1 aagaagccaa cctgtggata ctgagaatcc ggatctttcg tctggagttg acgaacagta
       61 agttgaagtg acttggttgc atcgtcgtat tgctgtgtga cttcgaagat cggatgaccc
      121 atgcggtaaa gccactcatc aaagaaccaa tccattgact gaccggtcga ctcttcgatg
      181 gcaattctga actgctcagt ctcgactggc tgattggcat actttcgcag gtaatgattg
      241 atcgcacgcc accaattgtc gtcgccaaga ttcttccgaa gcatgtgcag gaccgctccg
      301 ccacgggggt atgcgtatgt atcaaacact gcatccggat ctctatagtt tttagtgacg
      361 attggtcttc ggttaccttg cttccaggca gagaagtaag aatcctgatt tgccttgatg
      421 tctgagtaga gaaagtcgtc ggatccaagc ttgtattcat cccacattgc ctggaagtac
      481 gttgcaaaac tttcgttcaa ccaaatgtcg gaccagtttc gacacgtgac atagtcgccg
      541 aaccattgat gcgctagttc atgggactgc aaaccgtcgc tcgtttgatc aaggtcagcg
      601 cgcgcgtcgt gaatcatgtt gtcggtttga gtggtcgcac tgatgttctc cattcccccg
      661 ccgaagtcgt gcactgtggt ctgcgcatac tttgcgtatg gatacctgat cccggtcttc
      721 tcggaaaaga acttcaccat ctccggcaag cgagcaacag taagttttgc ctccgcagct
      781 tcactaggat aggcataggt cgtgaccgga atccctgcat agtcgccaac aaccggggtg
      841 tattcaccaa cgatgaaaga agttagataa ctcgcgtgcg gctgatcaat cttccagtgg
      901 aatgttcgcg taccgtcgcg gttctctctc gtttctaaca ggcgaccgtt tgagattact
      961 tgaaggggct tttcgacggt ggcggttact tcagaagtaa agaaatcgtt tggatggtca
     1021 aaacacagaa accagtaatg attgtattcg ctctcgcctt gagtccaaat ttgcttcggt
     1081 cgagatggat cgtccgctcc aggcttgagg aatttcaacc cctcacctac caaaccaagt
     1141 tgactcggat cctgtggccc gttcgtgtgg tagtcgatcg tgagtgtcaa ttgatccgaa
     1201 ggctgataac cgcgatcgag agttatgttc actttctgct tcgcgacatc agtaacaaac
     1261 tgtagttcgg tacctaatcc cagtttgatc gcggttgggg tgatatttgc ggcgtcgagt
     1321 ttgattgttt tgaggtttgc gacaagcggc gcaaaaacca atgtttcacg gcctaaaatc
     1381 tgctctttgt cccaatcaaa ccgaagatcc aaggcgatat gacgcgtgtc gaagtcgtga
     1441 tctggaatgt attgtgccgg gggaaacggc ctgggatttt gtgctggctg ttgcaagcca
     1501 tcatggacaa ctggaacagg cttagcgatc acattt
//
LOCUS       DATCGC010001895         1637 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_258990, whole genome shotgun sequence.
ACCESSION   DATCGC010001895 DATCGC010000000
VERSION     DATCGC010001895.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1637)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1637)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1637
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258990"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(171..1412)
                     /locus_tag="VIJ87_18075"
     CDS             complement(171..1412)
                     /locus_tag="VIJ87_18075"
                     /inference="COORDINATES: protein motif:HMM:NF012694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEY5446336.1"
                     /translation="MAEFVCRLGTPAGEVVTRTVEATGVNEARVRLEREGFRVFNVTP
                     PKTSGVAALTRFGRSGSQARVKANDFLLFNQQLAALVRAGIPILQAITMLRKRAASAR
                     LRGVLGDVEDKIRGGAALSEAFAEQGGIFPRIYTASILAGERSGALDDVLSRYVIYMR
                     RNVALRRKIRGALAYPLFLLFASACMVTFLTVYVVPRMSDLFTGFGNELPTVTQIVVG
                     LSRWMSANVIWFGPVVIVGAVLLFLWSRTPRGKLQLSALILKVPLAGNLAVQLSVAQA
                     TRSLATLLAGGITLVESWEIASESITNLELRRRSSSILPMIREGRSFTESLEEAGWLP
                     PLAIDMIGIGERSGSLREMLDEVAVFYDAESEVRLEQLTTTLEPAILVVMGGVVVTIL
                     LAIYLPIIQSISTSAGVTGHH"
BASE COUNT          418 a          445 c          411 g          363 t
ORIGIN      
        1 taatcgattg gtgattctcg atcgggcggg agcaaatcca cgaacggtaa ccgatatcgc
       61 cgcgccaaat cgcgcgccgc cttcacctca ggcggctgat gctcgtctaa ttccccgcct
      121 ggcggaggag tcttaagtgc tatggtctcg ttttgcgaca ttcgtcttac tcagtggtga
      181 cctgtaacgc ctgcgctcgt tgaaattgat tgaataatcg ggaggtagat ggccaacaga
      241 atagtcacta caacgccacc catcacaacc agaatcgcag gctcaagggt ggtcgtcaac
      301 tgctcaagtc tgacttcgga ctcggcatcg tagaacacgg caacttcgtc caacatctcg
      361 cgcaaacttc ctgacctttc accgattccg atcatgtcga tagccagtgg cggcagccac
      421 ccagcttctt ccaggctttc agtaaatgat cggccttcgc ggatcattgg cagaatcgaa
      481 gagctgcgac gtcgcaactc aagattcgtt attgactcgg aagcaatctc ccaggattcg
      541 acgagcgtga taccgccagc taatagtgta gccagtgatc tcgtcgcctg tgccacagat
      601 agctgcacgg ccagatttcc tgccaaagga acctttagaa tcaaggcgct gagttgcagc
      661 ttgccccgcg gagttcggga ccataagaac agcaatactg ctccgacgat tactactgga
      721 ccaaaccaaa tcacgtttgc cgacatccag cgcgacaatc ccacaacgat ttgagttaca
      781 gtcggcaatt catttccaaa accggtaaac aagtctgaca tacggggtac gacgtagaca
      841 gttaagaaag taaccatgca ggcggaagcg aacaacaaga acaatgggta ggcaagagcg
      901 ccgcgaatct ttcgtcgcaa cgcaacgtta cgtcgcatgt aaataacgta acgactcagg
      961 acgtcatcga gagctcctga acgttcaccg gcaagaatcg atgcagtgta gattcgaggg
     1021 aatatgcccc cttgttcagc aaatgcctcc gagagtgcag cacccccgcg aatcttgtcc
     1081 tccacgtcac ccagaacacc tcgcaagcgg gccgaagcgg cacgtttgcg tagcatagtg
     1141 atcgcttgaa ggattggtat tcctgctcga accaaagcgg cgagctgttg gttgaacagg
     1201 agaaagtcgt ttgctttaac gcgagcttga gagccggagc ggccaaatct tgtgagggct
     1261 gcaactccag aagtcttcgg cggagtaaca ttgaaaacgc gaaagccttc ccgttcgagt
     1321 cgcacacgcg cttcattgac acctgtggct tcaacggttc gggttacaac ttcgccagca
     1381 ggcgttccta atcggcagac aaattcagcc atagttttga ttgtgcgaaa tcgaagtgag
     1441 ttcggagtat accatgcgat tccgcaacct cagacggcag acgtctccat aacttcacca
     1501 gaatctacac gcctgatcga gcgggaagtt gcaaacgaag tcgagcttgg tcagtagcta
     1561 ctttgcccga tttactgttt acttgcgcgt tatcttttga agaagccgtc ttgcgacggt
     1621 ttctataacg caattcc
//
LOCUS       DATCGC010001896         1038 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_258991, whole genome shotgun sequence.
ACCESSION   DATCGC010001896 DATCGC010000000
VERSION     DATCGC010001896.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1038
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258991"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..432
                     /locus_tag="VIJ87_18080"
     CDS             <1..432
                     /locus_tag="VIJ87_18080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446337.1"
                     /translation="QGLKILMVMINNWDMKDDNNEILATRGTTTGDLRYIISDLGATF
                     GKTGGIISRSRNKPEDYVKAKFINKVNGNVIDFAYGGKMKNVFENITVADARWLSNLL
                     GRLSDEQIKDAFRAANYSPSDVDDLARAFRQRISDLAAVTK"
     gene            complement(528..>1038)
                     /locus_tag="VIJ87_18085"
     CDS             complement(528..>1038)
                     /locus_tag="VIJ87_18085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446338.1"
                     /translation="ISSTETKYAATLERVAIDRTEVRRGEKIEVQAYVRTESGKQFVQ
                     SIPIQIPDDVAEGQLLVFVGDGNALQEGSAAKAFVPQDLGQLVRAINTMKKSDRLYVK
                     LFRITPGAVIGTSELPSLPPSVVATLNSDRTSGGYTPTVLSPIYEKELPPADFVISGQ
                     QLIAIEIVR"
BASE COUNT          287 a          246 c          254 g          251 t
ORIGIN      
        1 caaggtctga agatcctaat ggttatgatt aataactggg atatgaaaga cgacaacaac
       61 gagattctcg ccactcgtgg aaccacgaca ggtgatctcc gttacatcat tagcgatttg
      121 ggagcaactt tcggaaagac aggcggcatc atctcgcgta gccgaaacaa acccgaagat
      181 tacgtaaaag ccaagtttat aaataaggtc aatgggaatg ttattgattt cgcttacggc
      241 ggcaagatga agaatgtttt cgagaacatt acagttgctg acgctcgttg gctgagcaat
      301 ttacttggcc ggttgagtga tgaacagatt aaagacgcgt tccgagcggc gaattattca
      361 ccgagtgacg ttgatgacct agcgcgtgcg ttccggcaaa gaatcagcga tcttgcagca
      421 gtgacgaagt agaaaagaaa cagccgcaga tttacacaga aagacgcaga tcagaaaaag
      481 cttaattatt ctgatctgcg tttatttgtg tcgatctgcg gcttaagtta tcgcacgatc
      541 tcgatcgcaa taagctgctg acccgagatc acaaaatcag ccggcggcag ttccttttca
      601 taaatcggag aaagcactgt cggagtgtaa ccacctgatg ttcgatcgct attcagtgtg
      661 gcaacaaccg agggaggcaa acttggcagt tcgcttgtac caatcaccgc cccgggagtg
      721 atgcgaaaca acttaacgta gagacgatcg ctcttcttca tcgtattgat cgcgcggacg
      781 agctggccaa gatcctgagg cacaaaagct ttggcagccg acccttcctg aagcgcatta
      841 ccatcaccga cgaacaccag caactgacct tctgcaacgt cgtcaggaat ctgaatcgga
      901 atactttgca cgaattgttt gcctgattcc gttctcacgt aagcttgaac ttcgatcttc
      961 tcgcctcgcc tgacttcagt gcgatcaatc gcgactcgct cgagcgttgc cgcatacttt
     1021 gtttcggttg aagagatg
//
LOCUS       DATCGC010001897         1720 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_60590, whole genome shotgun sequence.
ACCESSION   DATCGC010001897 DATCGC010000000
VERSION     DATCGC010001897.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1720)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1720)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1720
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60590"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1110
                     /locus_tag="VIJ87_18090"
     CDS             <1..1110
                     /locus_tag="VIJ87_18090"
                     /inference="COORDINATES: protein motif:HMM:NF014026.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HEY5446339.1"
                     /translation="SLDQGLVDAGYTIDESLKSSYAKFITEQKAKRPKTPAFMMPPPI
                     PEMSLEMDRLQQLANDTNVAVLTLGRNSGEFADRVVANDFNLATLERAFIENVSTVFH
                     AQGKKVVVVLNVGGPIEMASWRSLVDAVLLAWQPGQDGGYAIADVLSGKVNPSGKLAT
                     TFPMTYTDVPSAKTFPGRETGKPSATANPFGGKPSEAVYEEGIYVGYRYYDTFGVKPA
                     YEFGYGLSYTTFKYGNVKLSTNKFQDKVTVSIAVTNSGSVSGKEVVQLYLVAPKQKLK
                     KPASELRAFAKTRLLKPGESQTISFTLTPRDLTSFDTASSSWVAEGGTYTVNIAASPT
                     NIKSSVSFGLAKDLVVEKSRRLLAPEAGLKELETP"
     gene            complement(1140..>1720)
                     /locus_tag="VIJ87_18095"
     CDS             complement(1140..>1720)
                     /locus_tag="VIJ87_18095"
                     /inference="COORDINATES: protein motif:HMM:NF024490.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446340.1"
                     /translation="LVAPINLRKRTIKLIQRETAHARTGRPGRIIAKLNSLTDLAVIR
                     ALYAASDAGVSIDLIVRGICMLKPGIPEASKNIRVRSIVGRFLEHSRLFYFGNNGKDE
                     MFIGSADWMFRNLSRRVEVLVPIKDVRIKQFLKDSVLASYLKDNVNARELQSDGSYLR
                     VKPSEGEKRFDSQLEFEGKGLDIISEKPIDLG"
BASE COUNT          450 a          423 c          439 g          408 t
ORIGIN      
        1 tccttggacc agggcttggt cgacgccggc tacactatcg acgaatcact gaagtcgagt
       61 tacgccaagt tcatcaccga acaaaaagca aaacgaccaa aaacgccagc cttcatgatg
      121 ccgccgccaa ttccggagat gtctttggaa atggatcggc ttcaacaact agcgaacgac
      181 accaacgtcg ctgtactcac gttgggaagg aactctggtg agtttgcaga tcgggtcgtc
      241 gctaatgatt tcaaccttgc aactttggaa cgcgctttca tcgagaacgt ctcaaccgta
      301 tttcacgccc aaggtaagaa agtggttgtg gttctaaatg ttggtggtcc gattgaaatg
      361 gcgagttggc ggtcgctagt cgacgcagtg ctgctcgcct ggcaacccgg acaggacggc
      421 ggctacgcaa tcgcagatgt tttgagtggg aaagtaaatc cttccggcaa actggcgaca
      481 acgtttccga tgacttacac agatgtgcca tccgcaaaaa cttttccggg cagggaaaca
      541 gggaagccaa gcgcgactgc aaacccgttc ggaggtaagc caagcgaagc tgtttacgaa
      601 gaaggcatct acgtcggcta tcgctactac gacacttttg gcgtgaagcc cgcctacgag
      661 ttcggttacg gtttgtcgta cacgactttt aagtatggca acgtgaagct gagcaccaac
      721 aagtttcagg acaaggtaac tgtgagtatt gcggtcacaa atagcggaag tgtttccggc
      781 aaagaggtgg ttcaacttta cctggttgcg ccaaaacaaa agctaaagaa accagcgagt
      841 gagttacgag ctttcgcaaa gactagattg ctgaagcctg gagaatcaca aacgatcagt
      901 tttacgctga caccgagaga tcttacgtcg ttcgatactg cgagctcgtc gtgggttgct
      961 gaaggaggca cttacacggt caatatcgcg gcttcgccaa caaacataaa gagttcagta
     1021 agttttggat tggcgaagga cctggtagtt gaaaagtcgc gacggttact ggcgccagaa
     1081 gcaggactga aagaattgga aacgccctga gtgagtgacg caagtattaa tcagcagcgc
     1141 tatcccaggt caatcggctt ttcactgatg atgtctaacc ctttaccttc aaactccagt
     1201 tggctgtcga atctcttttc accttcagag ggcttaaccc gtaggtagct tccgtctgat
     1261 tgaagttcgc gtgcgttcac gttgtctttg agatacgacg ccagcactga gtccttcaga
     1321 aactgtttta tacgaacatc cttgatcggt acgagaacct caacccgacg actcaaatta
     1381 cgaaacatcc aatccgcact gccaataaac atttcgtctt tgccgttgtt tccgaaatag
     1441 aaaagcctgc tatgttcgag gaatcttccg acgatactgc ggacccgaat attcttcgat
     1501 gcttcgggga tgcccggctt caacatgcag ataccgcgca ctatcaaatc gattgagact
     1561 ccagcgtctg acgctgcata cagggcccgg ataacagcca ggtcagtcaa gctattgagc
     1621 tttgcgataa ttcttccagg ccgaccagtt cgtgcgtggg ccgtctcacg ttgaatgagt
     1681 ttgattgtgc gctttcgcag gttgattgga gcgaccaata
//
LOCUS       DATCGC010001898         1640 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_195257, whole genome shotgun sequence.
ACCESSION   DATCGC010001898 DATCGC010000000
VERSION     DATCGC010001898.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1640
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195257"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1512
                     /locus_tag="VIJ87_18100"
     CDS             <1..1512
                     /locus_tag="VIJ87_18100"
                     /inference="COORDINATES: protein motif:HMM:NF028442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase"
                     /protein_id="HEY5446341.1"
                     /translation="GGYESPYSLKKIVDYWFAQGVNRIIFHTSAHQPLDTKPGNTMVG
                     THINRNITWAEQGQPFMTYLARNSFMLQQGLFVADFAYLLNEGAPSTMPFWGDGLKPA
                     LPEGYDFDYVNADVLLNRMEVNDEGRIVLPDGMSYRVLVLPEVDRMTLPVIEKIWRLV
                     QKGATVLGPKPLHSPSLSGYSNGDGPVRYMAEELWGDLDGVSRTKRKFGKGTVVWGLS
                     PADVIASMGTSKDFEYSQSLDSRVAWIHRRAGDADIYFVANNTDRKQDINARFRVSGK
                     EAELWHADTGEIEPAEFSIADGRTTVPLHLAERESVFVVFRRAASSTERTLPRTKATT
                     LATLDGPWTVSFPSNLGAPPKIIFPKLESWTANADEGVKFFSGTAVYSKTVRVESSWL
                     RSGEKVLLNLGTVNDLVEVSVNGQALGILWKAPYQVDVTNALKAGANHLQIKVTNEWT
                     NRIIGDRTAAPEKKVLAGPPAGGIFGASQTLSNSGLLGPVTFVSVTNGSRQAK"
BASE COUNT          382 a          386 c          473 g          399 t
ORIGIN      
        1 ggtggttatg aatcacctta ttcgttgaaa aagatcgttg actactggtt tgcgcaaggt
       61 gtcaatcgga tcatcttcca tacatctgct catcaaccgc tcgacaccaa gcccggcaac
      121 accatggtcg gcacacatat caatcgcaac atcacctggg ctgaacaggg tcagccattc
      181 atgacttacc ttgcgcgcaa cagtttcatg ttgcagcagg gtttgtttgt cgcggacttt
      241 gcatatctgt tgaatgaagg cgcgccctcg accatgccgt tctggggtga tggattgaaa
      301 ccggcgcttc ccgaaggtta cgacttcgat tacgtaaacg cggacgtgtt gctcaatcga
      361 atggaagtga atgatgaagg aagaattgtt ttgcctgacg gcatgagtta ccgcgtgctt
      421 gtgctgccgg aagtagatcg aatgacacta cccgtcatcg aaaagatctg gcggctagtc
      481 caaaaaggtg ccaccgtttt gggtccaaag cctttgcatt cgccgagtct cagcggctac
      541 tcgaatggcg atggtcctgt tcggtatatg gcagaagagc tatggggcga tcttgatgga
      601 gtcagtcgga ccaagcgaaa gttcggaaag ggaactgtgg tgtggggcct ttctccggcg
      661 gatgtcatcg cctcgatggg tacctcgaaa gattttgagt acagccagtc attagattcg
      721 cgtgttgcat ggatccacag gcgagctggt gatgcggaca tctacttcgt tgcgaacaac
      781 acggatcgca agcaggacat caatgctcga tttcgggtga gtggcaaaga ggctgaactc
      841 tggcacgcgg acacaggtga gatcgaaccg gccgaattca gtatcgcaga tggtcggacg
      901 actgtgccgt tgcacctggc ggagcgagag tcggtgtttg tggtctttcg tcgtgcggct
      961 tcttcaaccg aacgcacttt gccgcgtaca aaggcgacaa cactggcgac acttgatggc
     1021 ccatggacgg taagttttcc gtcgaacctt ggtgcacctc cgaagatcat attcccgaaa
     1081 ctcgaatcct ggactgcaaa cgcagatgaa ggcgtgaaat ttttttccgg gaccgccgtt
     1141 tactcgaaga cagtgagagt agaaagttcc tggcttcgtt ctggtgagaa agtcttgctt
     1201 aatctcggga cggtaaatga tctggttgaa gtctcggtga atggtcaggc attagggatt
     1261 ctgtggaagg cgccatatca ggttgatgtc acgaacgcac tgaaggcggg agccaatcat
     1321 ttgcagatca aagtcacaaa cgagtggacg aatcggatca tcggcgatcg gacggcagct
     1381 ccagaaaaga aggtgctcgc tggcccccct gccgggggta tctttggcgc atcgcagacg
     1441 ttgagcaact cggggttgct tggtccagtg acatttgtgt cggtgacgaa tggttcaaga
     1501 caagcaaagt gagctgttaa taacgatctt tgaagtgatc tttgatttga agtgatcttt
     1561 ggaatgcggc tttgccgctt cccgtgcgga aagcctccgg ctttccgtcc gctacttata
     1621 acaaggagag gcttcgcctc
//
LOCUS       DATCGC010001899         1447 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_362300, whole genome shotgun sequence.
ACCESSION   DATCGC010001899 DATCGC010000000
VERSION     DATCGC010001899.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1447)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1447)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1447
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_362300"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..600)
                     /locus_tag="VIJ87_18105"
     CDS             complement(<1..600)
                     /locus_tag="VIJ87_18105"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY5446342.1"
                     /translation="MSVDKDLVSVQQARDLVEAAHRAQAEVAQFDQAKIDRICEAMAA
                     AALREAARLGAMAVEETGYGVPDDKREKNRFAAEDVWSYFRGLRTKGVVTESKDVVEI
                     ASPRGVVAGIIPSTNPTSTAIFKILISIKSRNAVVLSPHPSAAKCINETARVMKEAGI
                     KEGLPADAIGCMTSATIEGTEALMKHKQTAVILATGGIGL"
     gene            complement(813..1079)
                     /locus_tag="VIJ87_18110"
                     /pseudo
     CDS             complement(813..1079)
                     /locus_tag="VIJ87_18110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001183618.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="BMC domain-containing protein"
BASE COUNT          326 a          404 c          345 g          372 t
ORIGIN      
        1 gagaccgatt ccgcctgtcg ctagaattac ggctgtctgt ttgtgcttca tcaaagcttc
       61 tgtgccttca atcgtagctg aagtcatgca accaatcgca tccgccggca gtccttcttt
      121 gatgcccgcc tctttcatga cccgagccgt ctcattaata cactttgcag ctgatgggtg
      181 cggtgaaaga acgacggcat tacgcgattt gattgagatt agaatcttga agatcgctgt
      241 ggaagttgga ttggtagagg gaatgattcc agctacaacg ccgcgtggac tggcaatctc
      301 aacaacatcc ttcgattcgg ttacgacccc ttttgttctg agtccgcgga aataactcca
      361 aacatcttca gcggcaaaac gattcttttc gcgtttgtcg tcagggactc cgtacccggt
      421 ctcttcaacc gccatggctc cgagcctggc ggcctcgcgc agtgcagctg ccgccattgc
      481 ttcgcagatg cgatcaatct ttgcttggtc aaactgtgct acttcagcct gcgcgcgatg
      541 cgctgcctca accaggtcgc gcgcttgttg tacggaaacc aagtctttat ctaccgacat
      601 aacgcttcgc tccattgcag agtgaagatt ttcgattgca gattggaagc tgaaaacgtg
      661 gctttattaa tctggaatcg caatcacctg cttcgctctt tacttccctc tctgttcccc
      721 agggctttgc cttgttcgcc ttcgccaagc tgtccacggg ctccaccttg aattgctcgt
      781 tcgtcgggac tcaaaccggt gcgtccattg accggaagaa cacgctcgac ttctgcgtga
      841 ggccgcggaa tcacatggac actaatcaac tcacccactc tcctggccgc tgctgcacct
      901 gcatcagtcg ccgccttaac tgcaccaaca tcaccgcgca caaaaatcgt cacataacct
      961 gctccgatat actctttacc aagcagttgc acgttcgctg ctttgaccat tgcgtcggcg
     1021 gcttcaactg caccgacgaa tcctttggtc tcaaccattc cgagtgcttc taagggcatc
     1081 tctttatcct cactttgtaa aattgtggag attgaaagcg acttaatcgg gtcactattg
     1141 cggtcaacgt accaccctga gcgtgaagaa gcaagagacg ccaatctttt gagatgcaaa
     1201 agtttgacag cgtttagcag cgcaagctat agtgcggaaa aagcgggagt tgtagccttt
     1261 agacagtgct tgagaagcgg ttggtgattc cgtctaacag gtttcgattt acctccacac
     1321 ggagtcaccc ataggcaatc caatccatta accgttcaga cagtcgattg gagatggcag
     1381 cgagtatcgg cgaacaattg cagctcgcgc gcgaagggcg aggcattccc ttacgagaga
     1441 tttcgga
//
LOCUS       DATCGC010001900         1932 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_424710, whole genome shotgun sequence.
ACCESSION   DATCGC010001900 DATCGC010000000
VERSION     DATCGC010001900.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1932)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1932)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1932
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_424710"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1069)
                     /locus_tag="VIJ87_18115"
     CDS             complement(<1..1069)
                     /locus_tag="VIJ87_18115"
                     /inference="COORDINATES: protein motif:HMM:NF025034.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartyl protease family protein"
                     /protein_id="HEY5446343.1"
                     /translation="MQSQTNSGFRRLAACCVVAFVVFFVSSTAFASTKAHTKGLKALK
                     KGDYTAAEKIFREILGKDARDTEARLGLSFSLFKQRNLQGAYDNAARVIMLDPLSARA
                     HAILGASILGAGEFRLSIEEFRTALSLDEREALAISGLAMVDFYENRIGTALSGLRKA
                     VSLDPDEPDYVFNLGQAAARNEKYKEAADAYERFLFIAPKTDVDRRARIVGLIDFLRY
                     LGRQGSLYVPSAGVRTTVPFESFDNRPIISVRINGEKQPFKFVLDTGSGMSVLSEQTA
                     KKLGLKPVARGGMARAVGGGGKFEIVYGYLNSIEIGDVGVDNVPVYIRRFFDTNIPVD
                     GYLGLSVVSKFLASIDYGTRKV"
     gene            complement(1125..1793)
                     /locus_tag="VIJ87_18120"
     CDS             complement(1125..1793)
                     /locus_tag="VIJ87_18120"
                     /inference="COORDINATES: protein motif:HMM:NF002305.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-glycosylase/DNA lyase"
                     /protein_id="HEY5446344.1"
                     /translation="MQRNQEPVTVERVVATHRARRREIKKKLSEFDEVWRNGTDARLW
                     EELAFCIFTAGASARMGLNSVNAVRSLLLEGEPEEMTLALKEAGAHRFPVARPRYIVT
                     TRAYFRAEFDMALRKRLRSFSDPFERRDWLAQEKQIKGLGYKEASHFLRNIGVKGHAI
                     LDKHVMKCLAEVGVVDSSKPPTNRKRYLEVEQQLLQFAKYIKVNCDELDLVLWSMKTG
                     EILK"
BASE COUNT          496 a          516 c          425 g          495 t
ORIGIN      
        1 ataccttccg agttccgtaa tcgatcgagg ccaggaactt agacactaca gacaacccta
       61 aataaccatc aaccggaatg ttcgtgtcga agaatctcct gatatagacc ggaacgttat
      121 caaccccaac gtcgccaatc tcgatcgaat taagatagcc gtaaacaatc tcaaacttgc
      181 caccaccacc aactgctcga gccattccgc cccgagccac tggtttcaac ccgagtttct
      241 ttgcagtctg ttcagacaaa actgacatcc cagatcccgt atccagtaca aacttgaatg
      301 gttgcttctc gccgttaatt cttacgctga tgatcggacg gttgtcgaag gattcgaacg
      361 gtactgtagt acgaactcca gctgacggaa cataaagcga gccttgtctc cccaggtatc
      421 taaggaaatc aatcaggcca acgatacggg cacgtctatc gacatctgtt tttggagcaa
      481 tgaacaaaaa ccgttcatag gcatcagccg cctctttgta cttttcattt ctcgcagctg
      541 cttgtccaag attgaaaacg taatcaggtt cgtcaggatc aagactaact gctttacgaa
      601 gacctgatag tgctgtccca attcggttct cataaaagtc caccatcgcc aaaccggaga
      661 ttgccagcgc ttcgcgttca tcaagtgaaa gtgcggtacg aaattcttcg atggataagc
      721 gaaactcccc ggcgcccaga attgacgcac ccaatatggc atgcgctcgc gccgaaagtg
      781 gatccaacat aatgacgcgc gcagcgttgt cgtaagcgcc ctgcagattt cgttgcttga
      841 agagagagaa actcaggccg agtcgggctt cagtgtcgcg tgcatccttc ccgagtattt
      901 cgcgaaagat cttttcggcg gcggtgtagt cgcccttctt cagggccttc agtcctttgg
      961 tgtgagcctt agtcgaagcg aaggcggttg aactaacgaa gaaaacgaca aaggcgacca
     1021 cacagcaggc cgccaatctg cgaaatcccg agtttgtttg agactgcata agtcaccttc
     1081 taagtgagct aatcataacc ttgactgcaa atctttcctt catcttattt gaggatctca
     1141 cctgtcttca tagaccaaag aaccagatcc agttcatcac agttgacctt aatgtatttg
     1201 gcaaactgga gtaactgttg ttcgacctca aggtatcgct tcctgtttgt cggaggtttg
     1261 gacgagtcga ccacaccaac ttccgccaaa cacttcatta cgtgcttatc aaggattgcg
     1321 tggcctttta cgcctatatt tcgcaggaaa tggctcgctt ctttataacc cagtcccttt
     1381 atttgtttct cttgagcaag ccaatcgcgg cgctcaaagg gatcggagaa actgcgtaaa
     1441 cgcttacgca gcgccatatc aaattctgct cgaaaatagg ctcttgtggt aacaatgtaa
     1501 cgaggccgag cgacggggaa acgatgggcg ccggcttctt tcaaggccag ggtcatctct
     1561 tcgggttcac cttcaagcag cagcgacctc actgcgttga cagaattaag acccattcga
     1621 gcagatgcgc cagctgtaaa aatacagaag gcaagttctt cccaaagtcg ggcgtcagtt
     1681 ccattgcgcc aaacttcgtc aaactcactg agcttctttt ttatctctcg tcttctcgct
     1741 cggtgagtag caaccactct ttcaactgtg accggttctt gattgcgttg cactgtagtt
     1801 ttatcaatga cgcgattcta tgagtgcctt tgaaatcttg tcaacgagtt cactctgacc
     1861 gagctgcagt caaactgctc gactcaactc ttcatattga cagcaccgct caatgtgtct
     1921 aacgcctcag tt
//
LOCUS       DATCGC010001901         1305 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_226635, whole genome shotgun sequence.
ACCESSION   DATCGC010001901 DATCGC010000000
VERSION     DATCGC010001901.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1305)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1305)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1305
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_226635"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1261
                     /locus_tag="VIJ87_18125"
     CDS             <1..1261
                     /locus_tag="VIJ87_18125"
                     /inference="COORDINATES: protein motif:HMM:NF021942.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008239 - dipeptidyl-peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0070009 - serine-type aminopeptidase
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="S46 family peptidase"
                     /protein_id="HEY5446345.1"
                     /translation="SIPIILRLLERREAMLKQYMAKGEEETRRAQNELNSVQNSLKVY
                     RGQIEGLKSTALMSRKMKEEEALRKSIAASTERQKKYGDAWDAIAKAHGNYPTYIKDR
                     RIFEQAGGFNSQLFGFARTLVRLADENAKPNAERLPEYTDARRASLELGLYSPAPIFS
                     DFEKLKLADSLGFMVELLGPDNALAKQVLNGKTPEARAAEMIDGSKLADVEYRKELAK
                     GGKEAIAASTDPMIVVARMVDAKARESRKRYESELTGVERTNYSKIARALFETEGTNL
                     YPDATFTLRLSYGAIQGYMENGKKVVPFTTLGGLYSRADSHKEEFPYNLPSRWKEKKA
                     ALDLSIPFNFVSTNDIIGGNSGSPTINQNGELVGLIFDGNIQSLVGDFIYDESVNRAI
                     SVDSRGMLEVLKKVFGANEIVAELTAS"
BASE COUNT          343 a          320 c          356 g          286 t
ORIGIN      
        1 gagcatcccg atcattttgc gtttgctcga gcgacgcgaa gcgatgctca agcagtacat
       61 ggccaaaggc gaagaagaaa cgcgtcgagc tcagaacgag ttgaacagtg tgcagaatag
      121 tttgaaggtc taccgcggcc agattgaagg actaaagtcg acagccttga tgtcgcgcaa
      181 gatgaaggaa gaagaggcgc tccgcaagtc gatcgcggca agcacggaac gccagaagaa
      241 gtatggcgat gcctgggatg cgatcgccaa ggcgcatggg aattacccga cctacatcaa
      301 agaccgacga atcttcgagc aagccggtgg cttcaacagc cagttgtttg gttttgctcg
      361 cacgctggtt cgacttgctg acgaaaacgc gaagccaaat gccgagcgtt tacccgaata
      421 cacagacgcg cgtcgcgcct ccctggaatt gggtttatat tccccagcgc caattttttc
      481 tgacttcgaa aaacttaagt tggcagactc gcttggcttc atggttgagc ttctcggacc
      541 tgataacgca ctcgccaaac aagtgctcaa cggcaagaca ccggaagccc gcgccgctga
      601 aatgatcgac ggttctaaac tcgccgatgt tgaataccga aaagagttgg ctaagggtgg
      661 taaagaagcg atcgctgctt caactgatcc gatgatcgtc gttgccagaa tggttgacgc
      721 aaaagctcgt gagtcaagga agcgttacga aagcgaactc accggcgttg aacgtaccaa
      781 ctacagcaaa atcgcacggg ctctgtttga gacggaagga accaaccttt atccggatgc
      841 gactttcact ctccgacttt cttatggagc gatccagggt tacatggaga acggaaagaa
      901 agtggtgccg ttcaccacgc ttggcggctt gtattcgcgt gctgattcgc acaaggaaga
      961 gttcccatac aacttgccat cacgttggaa ggagaagaaa gctgctctcg atttgagcat
     1021 tccgttcaac ttcgtttcca caaacgacat catcggcgga aactcaggtt caccgacgat
     1081 caatcagaat ggcgagttgg ttgggttgat cttcgacggc aatattcagt cactcgtcgg
     1141 tgatttcatc tacgacgagt cagtgaacag agcaatctcg gtcgactccc gtggcatgct
     1201 cgaagttctg aagaaggtct tcggagcgaa tgagatcgtc gctgaattga cggcaagtta
     1261 gttaacgggt ggcacagact tcagtctgtg ttctatcgaa ttgcg
//
LOCUS       DATCGC010001902         1825 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_127337, whole genome shotgun sequence.
ACCESSION   DATCGC010001902 DATCGC010000000
VERSION     DATCGC010001902.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1825)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1825)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1825
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127337"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..600)
                     /locus_tag="VIJ87_18130"
     CDS             complement(<1..600)
                     /locus_tag="VIJ87_18130"
                     /inference="COORDINATES: protein motif:HMM:NF012343.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HEY5446346.1"
                     /translation="MSGETHEGVHRHPAPTGFIRKYIFSLDHKVIGIQYIILALAAVL
                     VGMTMSLLMRLKLSWPDHGWSLLGALFPGGAPNGVMNPEFYLSLVTMHGTIMVFFVLT
                     TAPQGGFGNYFLPIQIGAEDMAFPLLNMMSFWVTLVGFVVILAAIFFSGAESTVGPIG
                     GWTGYAPLSALGAIAGPGQGMGMNLWIISIAIFCVGSLLG"
     gene            complement(632..1480)
                     /locus_tag="VIJ87_18135"
     CDS             complement(632..1480)
                     /locus_tag="VIJ87_18135"
                     /inference="COORDINATES: protein motif:HMM:NF012344.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit II"
                     /protein_id="HEY5446347.1"
                     /translation="MGRVLAVIIWILTALSVLLFVSKKWWFPASISEHGPALDRQFMI
                     TLVIVGISFTAAQVGLGWVVWKYRDTGKPGDRGLYTHGSNKLEMVWTVITAVVFITLG
                     VMGQSVWASLRLNDVPPGSYSVEVVAQQFQWNFHYPGKDGVFGRTDPKLIDDGALNFI
                     GLDASDPNAKDDSVTAALAVPVNRPVELRLRSKDVIHNFWVPPLRFKQDLVPGMEIKV
                     HFTPTKVGRYELACAELCGQLHFKMKSYMLVLPDDELNALKVLSQEQFQARMGELIAK
                     YPVISN"
     gene            complement(1588..>1825)
                     /locus_tag="VIJ87_18140"
     CDS             complement(1588..>1825)
                     /locus_tag="VIJ87_18140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446348.1"
                     /translation="TAQQIVVYTLMLIPVSLLPTVLGLSGRIYFFGALILGLLFLYSS
                     IRAAFSMSRQQARRLLLASVLYLPLLFILMVANK"
BASE COUNT          506 a          481 c          440 g          398 t
ORIGIN      
        1 accaagcagt gaaccgacgc agaagattgc aatgcttatt atccacaggt tcatccccat
       61 gccctgcccg ggtccggcaa tggcgccaag cgcactcaac ggggcgtaac ctgtccaacc
      121 tccaatcgga cctactgttg attcagctcc agagaaaaag atggccgcaa ggattacgac
      181 aaaaccgaca agcgttaccc aaaacgacat catgttcagc agcggaaagg ccatgtcttc
      241 tgcgccgatt tgtattggga gaaagtagtt tccaaaacca ccttgaggcg ccgtcgtgag
      301 cacgaagaac accatgattg tgccgtgcat tgtcaccagc gacagataga actcggggtt
      361 catcacaccg ttgggcgcgc cacccggaaa taatgcacct aggagcgacc aaccgtgatc
      421 aggccatgac agcttcagac gcataaggag cgacattgtc attcccacca gcaccgcggc
      481 tagcgccaga atgatgtact gaatgccgat taccttgtga tccaggctaa agatgtactt
      541 acgtatgaag cccgtaggtg cggggtgccg gtggactccc tcgtgagttt ctcctgacat
      601 ctatcgtctc ctcttggtta agcttgatgt gttagttcga gatcactggg tacttcgcaa
      661 tcaactcacc catgcgtgcc tgaaactgtt cctgcgatag aaccttcaaa gcgtttagct
      721 catcatcagg aagaacaagc atatagctct tcattttgaa gtgaagctgc ccgcacagtt
      781 cggcacacgc gagctcatac ctgcccactt tcgtcggtgt gaagtgcact ttgatttcca
      841 ttccgggaac caagtcctgc ttgaagcgca atggaggtac ccagaaatta tgaatcacgt
      901 cttttgatcg aagtcttaat tcgacgggac gattaacggg cacggcaagc gcagccgtga
      961 cggaatcatc cttggcattc ggatccgatg catcaaggcc gatgaagttt agcgctccgt
     1021 cgtctatcag ttttggatca gtcctcccaa agacaccgtc tttgcctggg taatggaagt
     1081 tccactgaaa ctgctgggca acaacttcaa ctgagtaaga acccggtggt acatcgttca
     1141 aacggagcga cgcccaaacg ctctgcccca taacaccaag tgtgatgaag acaacggcag
     1201 tgattacagt ccagaccatc tcgagtttgt tgctgccgtg cgtgtagaga ccgcgatcac
     1261 cgggcttgcc ggtgtcacga tatttccaaa ccacccaacc caaaccaacc tgagcagctg
     1321 taaacgagat accgacaatc accagcgtga tcatgaattg acgatcgagg gcagggccgt
     1381 gttcagaaat ggaggctgga aaccaccatt tcttactaac aaagaggagc actgacaaag
     1441 ctgtcaggat ccagataata accgcaagaa ctcgtcccat cggttacatc tcctttaatg
     1501 tccgacaaac ttcagtttgt cgattcgttt gggttggtga ctacttgctg cgaacgcaac
     1561 gacaaactga agtttgtcga acaattctta tttatttgcc accatcaaga taaacagtag
     1621 tggcagatac agaacagaag ctaacaacaa acgacgcgct tgttgtcgcg acatggagaa
     1681 cgccgctcga atactgctgt agagaaaaag aaggcccaga attagtgcac cgaaaaagta
     1741 aattcggccc gacaacccga gaacagttgg cagcaagctc accggaataa gcatgagcgt
     1801 ataaacaacg atttgttgcg cagta
//
LOCUS       DATCGC010001903         2934 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_492724, whole genome shotgun sequence.
ACCESSION   DATCGC010001903 DATCGC010000000
VERSION     DATCGC010001903.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2934)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2934)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2934
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_492724"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1132)
                     /gene="bchI"
                     /locus_tag="VIJ87_18145"
     CDS             complement(<1..1132)
                     /gene="bchI"
                     /locus_tag="VIJ87_18145"
                     /EC_number="6.6.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR02030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0010007 - magnesium chelatase complex
                     [Evidence IEA];
                     GO_function: GO:0016851 - magnesium chelatase activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0015995 - chlorophyll biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium chelatase ATPase subunit I"
                     /protein_id="HEY5446349.1"
                     /translation="MPKRTPSKNPSTQSIPRVNRSLRNAPYPFSAIVGQDKMKLALIL
                     SVIDPQIGGVLIMGHRGTGKSTAVRALADLLPEIRVVADCMFGCDPSDERRLCANCAA
                     NTETYATKTKPVPVVDLPLGATEDRVCGTIDIERALNEGRKEFEPGLLARANRGFLYI
                     DEVNLLEDHLVDILLDVASSGWNKVEREGVSIEHPSNFVLIGSGNPEEGELRPQLLDR
                     FGLHAEVKTDNYLGNRVAIVELREAYDRDPEGFRKMFADDQQKLRRRIARARGNFAGI
                     KIERDLLTRIAQFCVELKVDGHRGELTIMRAARALAAYEGRKQVDDEDVRRVVGMSLR
                     HRLRRDILEETATTERIEQAVESIMNQPPPRPPAAKDQKDGRS"
     gene            1567..2901
                     /locus_tag="VIJ87_18150"
     CDS             1567..2901
                     /locus_tag="VIJ87_18150"
                     /inference="COORDINATES: protein motif:HMM:NF018269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-heme oxidoredictase family protein"
                     /protein_id="HEY5446350.1"
                     /translation="MRTTLQILALLLFATALALPLSIPRAVEGQGATEALTTDMDAKT
                     DDLFNGFGVRGTPIDECVAEPEPPTARGNGRFEDNKFIFSERENVDDGLGPTYNDVGC
                     VECHQSVDVGAFSQTMEFRAGHITNGQFVDAPGGQLIHARGTDSDIVEHISTAETVKA
                     FRITTSTLGDGFVECIANTTLQNNVAAQPVGQRGTLSQVPVTEANNALRIGRFGWKAQ
                     QASLLSFAGDAYLNEMGITSKFDGANGRSSSDPNAGTSENPASTADGVINVTFPSAFD
                     PVADPEDDGGDVLAFADFMAATRAPGRQNPIPAAATRGDSLFTSVGCSVCHTRTFTTA
                     APGTLINGGAFTVPTALGNKIIHPFSDFALHNIGTGDGIVQNAGQGSANQMRTAPLWG
                     IRARNRLMHEGLNITIFDSIQLHAGQATTARNNFNALTAGQRNDLIAFVLSL"
BASE COUNT          712 a          804 c          722 g          696 t
ORIGIN      
        1 tggaacgccc atctttttga tcttttgcgg ctgggggtcg aggtggcggt tggttcatga
       61 ttgattcgac cgcctgttcg atccgctctg ttgtcgcggt ctcctccaga atgtcgcgcc
      121 gcaacctatg tctcaacgac atcccaacga ctcgtcgtac gtcttcatcg tcgacttgct
      181 tccggccctc gtatgctgcc aaagcgcgag cggcgcgcat gatcgtcaat tcaccgcgat
      241 gcccgtctac tttaagttca acgcagaact gcgcgattct cgttaacaag tcgcgttcga
      301 ttttgattcc cgcaaagttc cctcgtgcac gtgcaattcg tcgtctgagt ttctgctggt
      361 catccgcaaa cattttccgg aaaccttcgg gatctcgatc atatgcttca cgaagctcaa
      421 caatagcaac tcgattcccc aggtagttgt cagtttttac ttctgcgtga agaccgaacc
      481 ggtcgagcaa ctgcggtctc agctcacctt cttcagggtt ccccgaccca atcaaaacaa
      541 aattcgacgg atgctcgatc gaaacacctt cacgctccac cttattccag ccagacgaag
      601 cgacatccag caaaatgtcg accaggtgat cttcgagtag gttgacttcg tctatataaa
      661 gaaaccctcg attggcgcga gctaagagac caggctcaaa ctctttccgc ccttcgttga
      721 gcgcgcgctc gatatcaatc gttccacaca cacgatcctc tgtcgcacct agaggaagat
      781 cgacaacagg aaccggcttt gttttagttg catacgtttc ggtgttcgca gcgcagttag
      841 cgcacagcct gcgttcatcg gatggatcac atccgaacat gcaatcagca accactctga
      901 tttccggcaa gagatcggca agcgcacgca ctgccgtcga tttaccagtt ccccggtgac
      961 ccatgatcaa aacgccgccg atttgcggat cgatgacgct taggatcagc gccagtttca
     1021 ttttgtcctg gccaacgatt gctgagaaag gatacggcgc attccgcagc gagcgattga
     1081 ctcgagggat ggattgtgtc gatggatttt tactcggagt gcgcttcggc atgtacgctt
     1141 cagtctttta gcggaaaaag cgaacgcgag caactcgaaa gcatgaacgg acaaaacgat
     1201 gctcgcaacc gtacggactt agcggctatg aggatgaaaa ttttcttgac ttgaattagt
     1261 cgaatcaact agagttcgcc cactcccgac ctaaataaaa gccagcccag tcaattgaat
     1321 ttttgcaata agctttgctt tttgctctct ctcgtggcta aggaatttcc ttagtttctt
     1381 cttacacgag aggactcatc actctagtct tcccccaggc tggaacttac ctcgcttaac
     1441 tccgacaggt ggattcgatc aagcaagggt cgcttaactc tttttaggca gaactctcag
     1501 ttgccgcaag gttaactgtc tgttcttgtc gaggaactcg tctacccagt ttccaggagg
     1561 taaaaagtga gaacaactct ccagattcta gctttactgt tattcgcgac ggcgcttgca
     1621 ctacccctca gcatcccgag agccgtcgaa ggccaaggcg caacggaagc actcacgact
     1681 gacatggatg ccaagactga cgatcttttc aacggtttcg gcgtccgtgg aactccaatc
     1741 gatgagtgtg tggcagaacc agaaccacct accgctcggg gcaacggcag atttgaagat
     1801 aacaagttca tctttagtga acgtgaaaac gttgatgacg gacttggacc aacctacaac
     1861 gacgttggct gtgtggaatg ccaccagtca gtagatgttg gagccttcag ccagacaatg
     1921 gaattcagag ccgggcacat cacgaatgga cagttcgttg atgctccggg tggtcaattg
     1981 attcacgcaa gaggcaccga ttcagacatc gtcgagcaca tctccacggc tgaaacggta
     2041 aaagcctttc gtattacgac cagcacactt ggcgatggtt ttgtcgagtg tattgccaac
     2101 acaactcttc aaaataacgt ggcagctcaa ccagtaggac aacgaggcac tttgagccag
     2161 gttcccgtta ctgaagcaaa caacgcgctt cgcattggac gcttcggctg gaaagcacag
     2221 caggcaagtc tgctttcgtt cgccggtgat gcttatctga acgaaatggg tattaccagt
     2281 aagttcgatg gcgccaacgg acggagttcc tcagacccaa atgctggtac gagtgaaaac
     2341 ccggcgagta cagcggacgg cgttataaac gtcacgttcc cgtcggcttt tgacccggtt
     2401 gcggatccag aggacgacgg aggtgacgtg ttggcatttg ccgatttcat ggcagcaaca
     2461 cgtgcacctg gccggcaaaa cccaataccc gcggccgcga cccgaggtga ctcactattt
     2521 acctcagtgg gctgctctgt ttgtcacaca cgaaccttca cgactgcggc tcctggaacg
     2581 ctcatcaatg gtggtgcgtt cacggtgccg acagcccttg gaaacaagat cattcacccc
     2641 tttagcgact ttgctttgca caacatcggc acgggcgatg gcattgtcca gaacgctggc
     2701 caaggttcgg caaatcaaat gcgcacagct ccactctggg ggattcgcgc gcgcaacagg
     2761 cttatgcacg aaggtctaaa catcacgatc ttcgattcga ttcagcttca cgcaggtcag
     2821 gcaacgacag caagaaataa cttcaatgcc ttaactgcag gacagcgaaa cgatctgatt
     2881 gcgtttgtac tatcactcta aaacgcggcg gcagcgagtg gcacagactt cagt
//
LOCUS       DATCGC010001904         1990 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_158686, whole genome shotgun sequence.
ACCESSION   DATCGC010001904 DATCGC010000000
VERSION     DATCGC010001904.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1990)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1990)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1990
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158686"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1722)
                     /locus_tag="VIJ87_18155"
     CDS             complement(<1..1722)
                     /locus_tag="VIJ87_18155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446351.1"
                     /translation="MSERSPRNRTLRKLFVLAILITAGTASIFIATRVGATGTFRLFP
                     AVPQSPTDFIRVVGITGVNDVTYSSTTGKLYVSVSSNGGSVGNTITTVDPLTGSLSNS
                     VFVGSEPNKLALSDNGTTLYTTLEGAFAVRQFNVQTQTPGTQFSVGQDSFFGLYSISD
                     LVVSPGNPNVVALARQFRGVSPPEAGVAVFDNGVQRPTTGPGHIVGSDFLAYSALPSK
                     LYGSGNSGGLRFMTVDANGVTQTGATATFVGAQIVFHNNVLFTSSGQVYNPDTQTQLG
                     QFFNVSTPAFVPDSSVNRAYYLVQENGNWTIKAFDINTFLQVGSLGVPGIVGNPTRMV
                     RWGANGLAFRTSSGQLFIVQTSLIPSAEPIPTPTPTPSPSPTPTPFATFVQTVPLATN
                     DLIYSAPLQKLFASVPSRIGTGGNSLTSIDPATATLSAPVFVGSEPNRMALSDDSQTL
                     YVCLDGAFGVRRFDMTSQTPGLQFPIGVDSFNGVLVGRDVAVLPGGSDTVAVARTNLV
                     SSPSSDGVAIYDNGVKRTKSTTNTAFFVEPSATGSRVYSSGFGASVDRILVDATGATL
                     QGFASTPT"
BASE COUNT          513 a          493 c          536 g          448 t
ORIGIN      
        1 tgtcggagtc gaggcaaacc cctggagcgt cgcacccgtt gcgtcaacca aaatccggtc
       61 aactgacgca ccgaatcctg agctgtagac tctcgatcct gttgctgacg gctcaacgaa
      121 gaacgcggtg tttgtagtcg acttagtgcg ctttacacca ttgtcgtaaa tcgccactcc
      181 atctgaactc ggcgacgaca caagattcgt tcttgccaca gcgaccgtgt ccgagcctcc
      241 aggcaatacg gcaacgtccc ttccgactag gacgccgtta aatgagtcaa cgccaatcgg
      301 gaattgcaaa cccggggttt gcgacgtcat atcaaaacgc ctgaccccga aagcaccatc
      361 gaggcagacg tagagcgttt gactgtcatc agacaacgcc atcctgtttg gttcactgcc
      421 aacaaaaaca ggtgcactca gcgtagccgt cgctggatca attgacgtaa gactgttgcc
      481 accggtacca atccggctgg gcacgctcgc aaacagtttt tgcagaggcg cactgtaaat
      541 aagatcgtta gtcgccagcg gaacggtctg cacaaacgtc gcgaacggtg ttggagttgg
      601 agaaggtgat ggagttggcg ttggcgtagg aatcggttcg gcagaaggga tcagcgaagt
      661 ttggacaata aacagctgac ccgacgaggt tcgaaaagcc aatccgtttg cgccccagcg
      721 aaccatcctg gttggattcc caacgattcc aggtacgcct aacgaaccca cttgaagaaa
      781 agtattaatg tcgaaggcct tgatcgtcca attgccattt tcctggacga ggtaatacgc
      841 acgattgact gaagagtcag ggacaaatgc gggcgtgctc acgttaaaga actggccgag
      901 ctgcgtctgc gtgtctggat tgtagacctg gccagatgaa gtgaagagca cgttgttgtg
      961 gaagacaatc tgcgctccca cgaaggttgc tgtcgcgccg gtttgagtta caccattggc
     1021 atcaacagtc atgaagcgaa gtccaccact gttgccacta ccataaagtt tcgaaggcaa
     1081 agccgagtaa gcgagaaagt cgctgccgac aatgtgaccg ggtccggtcg ttggacgttg
     1141 aacgccattg tcgaagaccg caactccagc ttcaggagga ctcacgccgc ggaactgtct
     1201 ggcaagggca actacatttg gatttccggg tgaaacaacg aggtcgctaa tcgaatagag
     1261 tccgaaaaac gaatcttggc caacggagaa ctgagtgcct ggggtttgtg tttgcacatt
     1321 gaactggcga actgcaaacg cgccttccag cgtggtgtac aaagttgtcc cattgtcgga
     1381 gagggcaagc ttgtttggtt cactaccaac aaataccgaa tttgagagac ttcctgttag
     1441 cggatcgacg gttgtaatgg tgttaccgac actgccgccg ttgctggaaa cgcttacgta
     1501 taactttcca gttgtcgaac tgtaggtgac gtcgttaacg cctgttattc caaccacgcg
     1561 aatgaagtcg gttggtgatt gagggacggc gggaaacagc cggaaagtac cggtagcgcc
     1621 aactcgagtg gcgataaaga tcgaagcagt cccggctgtg atgagtattg ctaagacaaa
     1681 gagtttccgt agagttcggt tgcgaggtga gcgttcagac acaaataatt ctcccagtga
     1741 aattaataaa ctgcgccctg attttcgtgt tttgctttct ctgtgtcctc tgcgtctccg
     1801 tgccctctgc gttttataaa ggcggaccaa aagttaacgc agagatcact aagacacaga
     1861 ggtcacagag aatttcaaaa gaggtaagac ttgagaatca aggcccaaag cgctgcctgt
     1921 attcgcctga aataatgaac gctttgacca tctccgcatc aacgaagttt ccgttgaatt
     1981 ggttgagctt
//
LOCUS       DATCGC010001905         1486 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_60844, whole genome shotgun sequence.
ACCESSION   DATCGC010001905 DATCGC010000000
VERSION     DATCGC010001905.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1486)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1486)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1486
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60844"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1441)
                     /locus_tag="VIJ87_18160"
     CDS             complement(<1..1441)
                     /locus_tag="VIJ87_18160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446352.1"
                     /translation="MQKIFIGLGQAMKWAVENISYSDVLDTINSGLFLGLVLMFKRFV
                     DTFGNLTNNLSAVFGSASGVLDQFKNNLKSMQNEIRAKALMNIAIAVAVLAGSAVLLA
                     SVDTKKLTTALAAIGGLMVTLVGSMRLLTAGGGKKMPDAKTMAKQTGQIVALSGAMVA
                     FSTAVLILSGAVAIMGKLDPKTMQQGLEGVGAIVAGIVAATAILGKTGGGGTILATAT
                     ALLILSAALTAFVGVMKLYESLDISTITNGGGKAALVILAIGAAMQIFQGKRAISGAI
                     GMVIISEALKVITDALILLSSIDGKKLLAMVLMLDILMVSMAGLAEVSNPASAAGFII
                     MAAAIFILAKSLDILAKIPGGDIFKGMVAIVAAILLIAGTAAALSSLSPLILALGVAL
                     LSVGGALFLAGAGVFMFAAAMGILAVVGPAAFQALVDGADQLLAFLPKLGEAMGEMVV
                     SFFTGLVKAAGPLTKAIGKLLEILLQALTN"
BASE COUNT          435 a          429 c          312 g          310 t
ORIGIN      
        1 cattggtcag agcctgaaga agaatttcca acagctttcc aatagccttc gtcaaaggac
       61 cagcagcctt cactagtccc gtgaagaacg aaacaaccat ctcacccatt gcttcgccga
      121 gcttcggaag gaatgccagc aactgatctg cgccgtcgac aagtgcctgg aatgccgcag
      181 gaccgacaac agcaagaatt cccattgccg cagcgaacat aaagacgcct gcgccagcca
      241 agaacaacgc tccaccaacc gacaacaaag caacacccaa agccagaatc aacggactta
      301 gcgacgaaag agctgccgct gttcctgcaa tgagaagaat ggctgcaaca atggcaacca
      361 tccccttgaa gatgtctcct cctggaattt tagccagaat gtcgagcgac ttagccaaga
      421 tgaagattgc tgctgccata atgatgaatc ctgcggcact agcgggattt gaaacttcag
      481 ctagaccagc catagacacc atcagaatgt ccaacatcag aaccattgca agaagcttct
      541 taccgtcaat tgacgaaagc aagatcagag catcagtaat caccttcaaa gcttctgaaa
      601 tgatcaccat acctatggca ccactaatgg ctctcttccc ttggaagatt tgcatagcag
      661 caccgatagc cagaatcacc aaagcggctt tgcctccacc gttagtgata gtgctaatat
      721 ccaagctttc gtagagtttc atcacaccca caaacgctgt tagcgcagca gatagaatca
      781 acaatgcggt agcagtagcc aagatggttc ctccaccgcc cgtttttcca agaatggcgg
      841 ttgccgctac aatgcctgct acaatggcac caacaccctc caaaccctgt tgcatggttt
      901 tgggatcgag cttgcccatg atagccacag cacctgacag aatcagaact gcggtcgaga
      961 aagctaccat agcaccactc aacgcaacta tctggccagt ctgcttagcc atagttttgg
     1021 cgtcaggcat cttcttacca ccgccagcgg tcaacaaacg cattgaacca actagggtca
     1081 ccatcaagcc accgatagca gcaagagctg ttgtaagctt cttagtgtcg acacttgcca
     1141 acagaactgc tgaaccagca agcacagcta cagcgatagc gatgttcatg agagcctttg
     1201 cacggatctc gttctgcatc gacttcaggt tgttcttgaa ttgatcgaga acaccacttg
     1261 cgctaccaaa gaccgccgac aagttgtttg tcaaattacc aaacgtatcg acaaaccgct
     1321 tgaacatcaa cacaagacct aggaacagtc ccgaattgat agtgtccaga acatcgctgt
     1381 agctgatgtt ctccacagcc cacttcatag cctgcccaag accaatgaaa atcttctgca
     1441 tgaccttgat cagaccttgc gccgctgagg tgagaccctc cgcgat
//
LOCUS       DATCGC010001906         1440 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_226826, whole genome shotgun sequence.
ACCESSION   DATCGC010001906 DATCGC010000000
VERSION     DATCGC010001906.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1440)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1440)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1440
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_226826"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..951
                     /locus_tag="VIJ87_18165"
     CDS             <1..951
                     /locus_tag="VIJ87_18165"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF004739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit D"
                     /protein_id="HEY5446353.1"
                     /translation="NLAYVMAGEKLLKLEIPERAQTIRVLMCELQRIGSHLVWLGTHA
                     LDIGAMTVFFYCFREREKILNLIEAASGGRLTPSYFRIGGLMMDLPAGFENRCKQFLN
                     DFPHAVDEFHTLLTGNKIFQKRTQGVGYISAEDAIDWGLSGPCLRGSGVALDIRRANP
                     YSGYENYDFEVPTEPDCDVWARYMVRMRELKESHKIAVQALAKLKPGPVKADAPKVVL
                     PDRQAMKKHMDALIHHFLIVAEGFDVPAGEVYHPIEASKGELGVYMKSDGGPKPSRVH
                     FRGPSFVNLSALPDMAKGEMVADIVAVIGSLDIVLGEIDR"
     gene            1083..>1440
                     /locus_tag="VIJ87_18170"
     CDS             1083..>1440
                     /locus_tag="VIJ87_18170"
                     /inference="COORDINATES: protein motif:HMM:NF013426.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase subunit E"
                     /protein_id="HEY5446354.1"
                     /translation="MSQQLTNIQPLSQPVDLDVAAATFSPDVEAEIDRHLAKYPVTRS
                     AILPLMFVVQRERGYLDPPGVLYLANRLNLRITDIWEVATFYSMIYTEPVGKYHIQVC
                     KTLSCKIRGSSTITEHC"
BASE COUNT          361 a          358 c          383 g          338 t
ORIGIN      
        1 aacctggcct acgtgatggc cggtgagaaa ctactgaaat tagagattcc agagcgagct
       61 caaacgattc gcgtgttgat gtgtgaactc caacgtatag gttcgcacct tgtctggctc
      121 ggcacccatg cactcgacat cggcgctatg acggtcttct tctactgctt tagagagcgg
      181 gaaaagattc ttaacctgat tgaagccgca tctggtggtc gtctcacgcc gtcatatttc
      241 cgaatcggcg gactgatgat ggacttgccc gccggatttg aaaatcgatg caagcagttt
      301 ctcaacgact ttccacatgc ggttgacgaa tttcacacgc tgttgaccgg caataaaatt
      361 ttccaaaaac gaacgcaggg tgttggttac atttctgctg aagacgcgat cgattggggt
      421 ttgtctggac catgtctgcg tggaagtggt gtggcgctgg atatcagacg agcgaatccc
      481 tacagcggtt acgagaacta cgatttcgaa gtcccaaccg aacctgattg cgacgtttgg
      541 gcgcgctaca tggttcgcat gcgtgaacta aaagaatcac acaagatcgc agtacaggcg
      601 cttgcgaagt tgaagccagg accagttaag gcagatgccc ctaaagtcgt gcttccagat
      661 cgtcaggcaa tgaagaagca catggacgcg cttattcatc acttcctgat cgtcgcggaa
      721 ggcttcgacg taccagccgg cgaggtttac cacccaattg aagcgtcgaa gggtgaactg
      781 ggcgtttaca tgaagtcaga cggcggacct aaaccaagcc gtgtgcattt ccgtggacca
      841 agctttgtaa atctgtcagc tcttcccgat atggcaaagg gtgagatggt ggccgacatc
      901 gtcgcagtga ttggatcgtt ggatattgtg ctgggggaga tagataggta atcggacggc
      961 atgagctggt cgaagggtcg cttctaagct ttgcactttg aaccttagta ctttgaaaga
     1021 ctcgacccgt tgaaagatca cgagcgatta caaaagtaga accaagcact aagcacaaaa
     1081 ccgtgagcca gcaattaaca aacatccaac ccctttccca acccgtcgat ctcgacgtcg
     1141 cggcggcgac tttttcgccg gatgtcgagg cagagattga tcgtcacctg gcaaagtatc
     1201 ctgtgacgag atctgcgatc ctgccgctca tgttcgttgt gcaacgtgaa cggggttacc
     1261 tcgatccacc cggggttttg tacctggcaa accggctgaa cctgcgcatc accgacatct
     1321 gggaagtcgc aaccttctac tcgatgattt acacggaacc ggttggcaaa tatcacatcc
     1381 aggtttgtaa gacgctgtcg tgcaagataa gaggctcatc gaccattacc gaacactgtg
//
LOCUS       DATCGC010001907         1092 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_492838, whole genome shotgun sequence.
ACCESSION   DATCGC010001907 DATCGC010000000
VERSION     DATCGC010001907.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1092
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_492838"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1092
                     /locus_tag="VIJ87_18175"
     CDS             <1..>1092
                     /locus_tag="VIJ87_18175"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HEY5446355.1"
                     /translation="NTPLGSHQFNINGQSGATMHSAQATLLVVSPNSADLSITKTASP
                     NPAQVGLTLSYRIVVTNNGPANATNVVVTDNLPTGVTFGSSSTTQGNCNGSGPVNCNL
                     GSLSLNSSAIVTINVTPTAQGQIVNTATVAGSESDFDTSNNSASATIQVLPASVSPTM
                     LDPNLTVTTVVQGLNQPTSLAFIGANDFFVLEKTTGKVQRIVNGVLQSTVLDLPVNSS
                     SERGLLGIALHPQFAQNGFVYLYWTETNSGIDTANTDDVPLLGNRVDRYIWNGTTLTF
                     DRNLIKLRAFQQDAGQPSRANHNGGVLRFGPDGKIYIIMGDNGRRGLLQNITSGGPVP
                     DDQFGGPEPDNAHLTGIVLRLNDDGSTPS"
BASE COUNT          273 a          289 c          276 g          254 t
ORIGIN      
        1 caacacaccg ctcggtagtc accagttcaa catcaacggt caatcgggtg cgacgatgca
       61 ctccgcgcag gcaacgctgt tggttgtcag tccaaatagc gcagaccttt cgataaccaa
      121 gactgcgtca cccaatcccg cgcaagtcgg gcttaccttg tcttaccgaa tcgtggttac
      181 caataacggt ccggccaacg ctaccaacgt cgttgtgaca gacaatcttc caacgggtgt
      241 aacgtttggt tcgtcatcaa ctacgcaagg gaactgcaac ggtagtggcc cggtgaattg
      301 caaccttgga agcttgtcct tgaattcgag tgccatcgtc accatcaacg tgacgccaac
      361 tgcacagggt cagatcgtaa acacagctac agttgccgga agtgaaagcg attttgacac
      421 gagtaacaat tcagcaagcg cgacgattca agttttgccg gcgtcagttt cgcccacgat
      481 gctggatcca aacctgactg tcacaactgt tgttcaagga ttgaatcaac cgaccagctt
      541 agcgtttatc ggcgccaacg atttcttcgt actggaaaag acaaccggca aggtccaacg
      601 gatagttaat ggtgtgttgc aaagtactgt tctggatttg ccggtgaaca gttcatcaga
      661 acgaggtctg ctgggaatcg cattacatcc ccagtttgct cagaacggat ttgtttatct
      721 ctactggaca gaaaccaatt ctggaatcga cacggcaaat actgatgatg tgccgttgct
      781 tggtaatcga gtcgatcgtt acatctggaa cgggacgacg ctcacctttg atcgcaactt
      841 gatcaagctg cgtgctttcc aacaggacgc tggtcagccg tcgcgcgcaa atcacaatgg
      901 tggcgtgctg cgtttcggtc ctgacgggaa gatctacatc atcatgggag acaacggccg
      961 acgtggttta ctgcaaaaca tcacgagcgg cggtccggtt ccggacgatc agttcggcgg
     1021 acccgaacct gacaatgcac atttaactgg cattgtgctt cggttgaacg acgacggttc
     1081 aactccttcc ga
//
LOCUS       DATCGC010001908         2130 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_158795, whole genome shotgun sequence.
ACCESSION   DATCGC010001908 DATCGC010000000
VERSION     DATCGC010001908.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2130)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2130)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2130
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158795"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1110
                     /locus_tag="VIJ87_18180"
     CDS             <1..1110
                     /locus_tag="VIJ87_18180"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEY5446356.1"
                     /translation="KLKAPSSKTISLKTTLALPMIRTILICTTQVPFTSGGGEAHVEG
                     LRRALIEAGYNAEISSLPFKWYPPTEIMRGALAWRLLDLSEANGKSIDMVIGMKFPAY
                     LVSHPNKVLWVMHQYRAAYNLWGTQFDDLSTYPEGPRIRDWIKQCDDRLIPQSKKVFA
                     NSKTVAARLQQFNNIDSVPLYHPPPRADQLHVGEQGDYFFYPSRLEPQKRQELLIEAA
                     RFLKTPVKIVLAGNSHDSGHYATLVKKFDVGDRVCLRGFVSESEMIELYANALGVCYL
                     PFDEDYGYVTLEGMLSGKPVVVPSDGGGAMEFIEHEHEGLITEPEPAAIADALDSLYA
                     DRSKAKTMGLSGLERIKAMNLSWKHVVEMLVNAAE"
     gene            complement(1262..2032)
                     /locus_tag="VIJ87_18185"
                     /pseudo
     CDS             complement(1262..2032)
                     /locus_tag="VIJ87_18185"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
BASE COUNT          546 a          553 c          509 g          522 t
ORIGIN      
        1 aagctcaaag cgccaagttc aaaaacaatt tctctcaaaa caacattagc cctccccatg
       61 atccgtacca ttctaatctg cacaacccaa gtccccttca cctctggcgg tggagaagcg
      121 cacgtggaag gattgcgccg agcattgatt gaagcgggct acaacgctga gatttcttcg
      181 ttgccgttta agtggtatcc accaactgaa atcatgcgtg gagcactagc ctggcgactg
      241 ctggacctga gcgaggcaaa tggcaagtca attgacatgg tgatcggaat gaagtttccg
      301 gcgtacctgg tatctcatcc gaataaggtg ttgtgggtga tgcaccaata ccgcgcagct
      361 tacaatcttt ggggtaccca gtttgacgat ctttctacct atcctgaagg cccacgcatt
      421 cgagactgga ttaaacaatg cgacgaccgt ttgattccgc agtcgaagaa ggtctttgcg
      481 aactccaaga ctgtcgccgc cagacttcag cagttcaata acatcgacag cgttcctctt
      541 tatcatccgc caccacgagc ggatcagctt cacgttggag agcagggcga ctacttcttc
      601 tatcccagcc ggctcgagcc acagaaacgg caagaacttt tgatcgaggc ggccaggttt
      661 ttgaagacac cggtaaaaat tgttctcgcg ggaaactcac acgactccgg acactatgcg
      721 acgctagtga agaaattcga cgttggagac cgcgtctgct tacgtggttt cgtttccgaa
      781 tcagaaatga tcgagctgta tgcaaacgct ctgggtgttt gttacttgcc gtttgacgaa
      841 gactacggct acgtcactct tgaaggaatg ctttctggta agccagtggt tgtgccatca
      901 gacggcggtg gggcaatgga gtttatcgaa catgaacatg agggattgat aactgaacct
      961 gaaccagcag caatcgccga tgccttagac tcgttatatg cagatcgcag caaagccaaa
     1021 acaatgggac tgagcgggct tgagagaatt aaggctatga atctctcgtg gaaacatgtg
     1081 gtcgagatgt tggtgaatgc tgcggaatga tgtccgataa gctttagctt gtcgtcgcct
     1141 tacggaagtt cagccgcaga tcggtccaaa caaactgagc cggaagtccc aaacattcta
     1201 tttctgatct gcgctttttc tgcgttcatc tgcggctgaa cttccgtaag acaacgacaa
     1261 gctaaagctt atcggacata cccctaaacg atgagcgcaa actacagaac aggttgaagc
     1321 ggactatcaa ccagatcgct ataaaaccat ctctcatcgt tatcttctta ccttcggcgt
     1381 aggtccggcc gtaataactt ataggcactt catagattgc gatcttcaac ttcgctatct
     1441 tcgccgtcac ttcaacttca aacccgaacc gcgtcgaaac gatcaccatg ctgcggataa
     1501 tgtctccgcg aaatgccttg tagcctgttt cgatgtcagt catgttgagg ttggtaaaca
     1561 gattcgagaa gaaggtgaga gacttgttgg cgaggtagtg ataaaaataa agcacgcgcg
     1621 tcgctcgtcg tactaaaaac cgggagccat acacaacatc agcccgtccc tcaaggatcg
     1681 gcagaatcac agctggaatc tcggtcgggt catactcgcg atccgcatcc tgcacaataa
     1741 cgatctcgcc actactcatc tgaaaaccta acttcaacgc cgcggtcttt cctgagtttt
     1801 tctcgagtca ggccgttcgt atcaccgaat gctgctccgc aagtttggaa ataaccgtag
     1861 gcgttccatc agtcgaacaa tcatccacaa tgatcacttc gagcagatga ggaactgcca
     1921 gcactttctc tacaacctct cccagagttt cagcttcgtt gaagaccgga atgatcaccg
     1981 acaggcactc acctgcgtct tggtcgatct gctttgtgtt gccgggttcc attcttaggg
     2041 cttcttctca aactggtgat attcacctgt cagcttgaac gcactcgcaa gcttgtcggg
     2101 actgtgattg cgatccaggt cgtcaagcca
//
LOCUS       DATCGC010001909         1657 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_127475, whole genome shotgun sequence.
ACCESSION   DATCGC010001909 DATCGC010000000
VERSION     DATCGC010001909.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1657
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127475"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..211
                     /locus_tag="VIJ87_18190"
     CDS             <1..211
                     /locus_tag="VIJ87_18190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446357.1"
                     /translation="ITAGLLPKDLEGTESTGYVFHVNRSVDGKSWYATAEPAQYGRSG
                     KLSFYIDAAGVKSSDVGGKPLSLRN"
     gene            410..829
                     /locus_tag="VIJ87_18195"
     CDS             410..829
                     /locus_tag="VIJ87_18195"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HEY5446358.1"
                     /translation="MSRLRRFIGNRRRNRRAQVRLNFTLRLSDPRTTSNGSRRIPSID
                     GHTLDISANGLALVVPAIRIGEHYLAGDDRRLHVSLKLPDGPVELTVAPVRYESLEED
                     QGDIGYLIGTRIVDMNPPDRSRFEEYVATVLATQSAN"
     gene            complement(846..1487)
                     /locus_tag="VIJ87_18200"
     CDS             complement(846..1487)
                     /locus_tag="VIJ87_18200"
                     /inference="COORDINATES: protein motif:HMM:NF018190.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate-binding family 9-like protein"
                     /protein_id="HEY5446359.1"
                     /translation="MSTDSTTTAEAPYLDLLPTDLDSEIWHSCPPIHITHYWTGEQAP
                     AARHAEARLCWNDEGLTVRFVCEQREPLIVADNPVTDVKTIGLWDRDVCEIFIAPDYA
                     NTNQYFEFEAAPTGEWIDLGIQFNPSGRETEWDYASGMTTTNKIALGQIVVAMTIPWS
                     KRIPKPKCGDEWKANLFRCVGPDEATRYLAWRPTRTPEPNFHVPEVFGVLRFV"
BASE COUNT          368 a          427 c          434 g          428 t
ORIGIN      
        1 cattacggcc ggtctattgc caaaggacct cgaagggacg gagtcaaccg gctacgtctt
       61 tcacgttaat cgctcagtcg atgggaaatc gtggtatgcg accgctgaac cggcacagta
      121 cgggcgtagc ggaaaacttt cgttttatat tgatgcggct ggcgtgaaga gtagtgatgt
      181 aggcggcaag ccactaagct tgcggaattg accctgtccc agcactgccg tgcgtgggat
      241 ttccgactca ttttgcaaag ccctctcgga catttctatt gccccgttta gtcgggacct
      301 ctagaatgga tttgcggctt tcccccaaat cgcagcccag ttcgtttgcc ctcctcaacg
      361 ttacggaact cttcttggtt gtgaaatgtc tgaattacct cggagaatcg tgtcgcgttt
      421 gcgccgtttc attggtaacc ggcgcaggaa caggcgtgca caggtcagac tgaatttcac
      481 tctgcgactg tcagatcctc gaaccacgtc taacggttca cgacgtatac cttccatcga
      541 tggacatacg ctcgacatta gcgccaacgg tctggcgctg gtagtgccag ccattcggat
      601 tggcgaacac tacctcgctg gagacgatcg ccgtctgcac gtgtcgctga aacttccaga
      661 cgggccagtt gaattgactg ttgctccggt tagatatgaa agtctcgaag aggaccaggg
      721 ggatattggt tacctgattg gcactcgaat cgtcgatatg aatccacccg atcgaagtcg
      781 tttcgaagag tacgtggcaa cggtgttagc gacgcagagt gcaaactagc acgggctatc
      841 ctgatttaca caaacctcaa aacgccgaat acttccggta catgaaagtt tggttcgggc
      901 gttcgggttg gacgccaggc caggtagcgt gttgcttcat ccggaccgac gcaacgaaac
      961 aggttggctt tccattcatc gccacacttc ggtttcggaa ttcttttact ccacggaatc
     1021 gtcattgcaa ccacaatctg tcctaacgca atcttgttgg tagttgtcat gcccgatgcg
     1081 taatcccatt cagtttcacg tccactgggg ttgaattgaa ttcccaggtc gatccattcg
     1141 ccggttggag ctgcttcgaa ttcgaagtac tgatttgtgt ttgcgtagtc tggcgcgatg
     1201 aagatttcac agacgtctcg gtcccaaagc ccgatagtct tgacgtcagt tacggggttg
     1261 tcagcaacga tcaacggttc tcgttgttca caaacaaacc gaaccgttaa gccctcgtcg
     1321 ttccaacaga gtcttgcctc tgcatgtcgt gcggctggcg cttgctcgcc cgtccagtaa
     1381 tgcgtgatgt gaataggagg acaagagtgc cagatctcgc tgtcgagatc cgttggtagt
     1441 agatctagat acggtgcttc agcggtggtg gttgaatctg tcgacatcgt gagcagtcag
     1501 taccacgacg cggtagcgtg tggctaaaca ataagtcttt gaaatctgag atctgagttt
     1561 acttctgaga ttctaacgcg gcgatacacg catcaatcaa ctcatccgga tcctcgtttt
     1621 gaaaaacccg cgcgttggtc cgtttcccaa acttctg
//
LOCUS       DATCGC010001910         1098 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_60962, whole genome shotgun sequence.
ACCESSION   DATCGC010001910 DATCGC010000000
VERSION     DATCGC010001910.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1098
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60962"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1085)
                     /locus_tag="VIJ87_18205"
     CDS             complement(<1..1085)
                     /locus_tag="VIJ87_18205"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY5446360.1"
                     /translation="MHIRHSAILSYLANSIATGERSVPYSLVTAIDEQDFRLLSKDAQ
                     AADSTKSDLPPIILNDWAAQDLSTRLGDTVTMDYYLWQEGGRLETRSAKFRLAGVLPI
                     KGLAADRNLVPDYPGITGSANLSDWDPPFPIDLQRIRQKDEDYWHQYRTTPKAFVPLE
                     VGQSLWQSRFGKVTSMRLWSSGDSIKAFEAKLRDNLNPALMGLLVLPVRSQGLDASRG
                     ATDFGEYFLYFSFFLVVSALLLTTLFFKLGIEQRVREIGTLRAIGFGPSAIRKLFLSE
                     GLILALTGSLIGLVGAIAYGELMMLGLRTWWVGAVGTTSLRLHISPQSLVFGGLGGIL
                     AALVCVVLTLRGLKSQSARSLLAGNVST"
BASE COUNT          286 a          290 c          291 g          231 t
ORIGIN      
        1 gtcgaaacat ttcccgccag gaggctgcgt gctgattggc tcttaagccc tcgtaacgtc
       61 agcaccacac aaactagcgc agccagaatt ccgccaagac ctccgaacac aagcgactgc
      121 ggtgaaatat gcagccgcag agaagtagtg ccaacggcgc caacccacca ggttcggagt
      181 ccaagcatca tcaattcgcc ataggcaatc gcaccaacta gaccaatcag gctccctgtc
      241 aaagcgagta tcaatccttc gctaaggaac aattttctaa ttgctgatgg gccaaagcca
      301 atggcgcgca gagttccaat ctctcgcacc cgttgctcaa taccgagttt gaaaaagagt
      361 gtcgttaaca ggagcgcaga gacgacgagg aagaaactga aatagaggaa atactctccg
      421 aaatctgtgg cgccacgcga ggcgtcaagg ccctgcgatc ggacgggtag aaccaacaga
      481 cccatcaacg caggatttag attgtcacgc agttttgctt caaaagcttt gatcgaatca
      541 ccactggacc agagtcgcat cgaagttact ttcccgaaac gcgattgcca cagcgattgt
      601 ccaacttcga gaggaacaaa agccttcggc gtagttcgat actgatgcca gtagtcttcg
      661 tccttctggc ggattcgttg caggtcgatc ggaaagggtg gatcccagtc tgaaagattc
      721 gcggaacccg taatgcccgg ataatcggga acaagatttc gatcggcagc cagtcccttg
      781 ataggcaaaa caccggcgag tcggaatttt gcgctcctcg tttcgagtcg cccaccttcc
      841 tgccaaaggt agtaatccat cgtcactgtg tctcccaggc gtgtgctgag atcctgagcc
      901 gcccaatcgt taaggatgat tggcggtaaa tcggattttg tcgaatcagc agcttgggca
      961 tctttactca gcaaacgaaa gtcttgctcg tcgatcgctg tgacaagaga gtaggggacg
     1021 gagcgctcgc cggtagcaat gctgttggcg aggtatgaga ggatagcgga gtgacgtatg
     1081 tgcacgctgt ctgcggtc
//
LOCUS       DATCGC010001911         1061 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_95009, whole genome shotgun sequence.
ACCESSION   DATCGC010001911 DATCGC010000000
VERSION     DATCGC010001911.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1061)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1061)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1061
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95009"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..874
                     /locus_tag="VIJ87_18210"
     CDS             <1..874
                     /locus_tag="VIJ87_18210"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="sialidase family protein"
                     /protein_id="HEY5446361.1"
                     /translation="QQISGISTTLCSQPGLPANAGICNEDQSSSPVVGPDGTFYVAFD
                     NQQHAQTPGQFRNQYLVVRSTDGGSTFGDPVSAVFPIYDGVNDYPINVNGRQTLSNSQ
                     FRIISAGNVTVDLTSGPASSSTSLYIAFSDNRNGTVASTNTDIVVVKSTDGGTSWNAP
                     VVLTSANDQFYPWATVGADGNLRVAFSDRSYDPSNIQYGETLASSFDGGTSFSFLRVD
                     TGLSNPNDSRFVTNGGTTNGKATFIGDYNGLDIGSDLVLHPAWTDMRTSAYPNPPPGA
                     GHKTQDAVTASVTD"
BASE COUNT          263 a          305 c          247 g          246 t
ORIGIN      
        1 ccagcagatc agcggcatca gcacaacttt atgctcccaa cctggccttc ctgccaacgc
       61 tggcatttgc aacgaggacc agtcatcaag cccggttgta ggtcctgacg gaacctttta
      121 cgtagcgttc gacaatcaac agcacgccca gacacctggt caattcagga accagtacct
      181 cgtcgtgcgc tcgaccgacg gtggatccac ctttggagat cccgtctcag cagtgtttcc
      241 aatatacgat ggtgtcaacg actatcccat caacgtcaat ggacgccaaa ccctgtctaa
      301 cagccagttc cgcataattt ccgctggcaa tgtgaccgtc gatctgactt ccggacctgc
      361 ttccagcagc accagtctct atatcgcatt ttcggataac cgtaatggga ccgtggcttc
      421 tacgaataca gacattgttg tcgtcaagtc cactgacggc gggacctcct ggaatgctcc
      481 cgttgtgctt accagcgcga acgatcaatt ttacccatgg gccaccgtag gcgcagacgg
      541 aaatctaaga gtggctttca gcgatagaag ttacgatccg agcaatatcc aatatggaga
      601 aacgctggcc tcgtctttcg acggaggaac ttccttttcg ttcctgagag tagataccgg
      661 cctatccaac cccaatgact cgcgtttcgt gacaaacgga gggacaacga atggaaaggc
      721 taccttcatt ggggattaca atggtctcga tatcggttcg gatctggtac tacatccagc
      781 ctggaccgac atgcgcacaa gtgcctatcc caatccgccc ccaggtgcag gtcacaagac
      841 gcaggacgca gtaacggctt ctgtcaccga ttaaacaaaa ctgctatttg ttactttccg
      901 cccgtcttgc ctcagcgagt ctcctcgtag caagcttttc aattgtaggc tcgatccgtt
      961 ctgggaccct ttacgcaaca atcccgcttt ccaaaagctc tgcgaggaaa aacattaata
     1021 atctgaccac ggattgaacg gataacagga taggtagggt g
//
LOCUS       DATCGC010001912         1127 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_127494, whole genome shotgun sequence.
ACCESSION   DATCGC010001912 DATCGC010000000
VERSION     DATCGC010001912.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1127)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1127)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1127
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127494"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1127
                     /locus_tag="VIJ87_18215"
     CDS             <1..>1127
                     /locus_tag="VIJ87_18215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446362.1"
                     /translation="PPAAGHSFRPWLDKIDTIKKEPPPHIQLFATDPINGTGTAPLNF
                     VISLHDFEAESLADETSPETPYVVFSNDPLTSNGSAGLLEAAKVFDFVTYTVPVNAAG
                     TYDVKIGIKTDSNQGMFQLAIDGSNQGLPQNEYSPVPGYNLLDLGPVTFAETGNHTFQ
                     FQVSGRDANSSGYQLIFDYIDLDPHPEVESLPIQTNSPYTVVTDPNLSGGKGILLQAT
                     SQGESINFTVPVAVAGIYDVSVGTETNFNEGVFQLAINGTPQGYPQNEFTPTLRYGAR
                     DLGTVTLSAGPQSFQFTVAGRDPQSGNYKLAFDYIELTLATHFEAEKVHVTATAPLRR
                     VIDANMSGQSGIILNATNVGDLATYSVPVPVAGTYDIKVGV"
BASE COUNT          273 a          311 c          288 g          255 t
ORIGIN      
        1 gtccgcctgc cgccggtcat tcattccgtc cgtggttgga taagatcgac acgatcaaga
       61 aagaaccgcc accgcatatt caactttttg cgactgaccc catcaacgga accggcaccg
      121 cgcccctcaa ctttgtcatc agcctgcacg actttgaggc ggaatcatta gcagacgaga
      181 catcgcctga aacaccctat gtggtcttca gcaacgatcc gctcacgagc aacggctcgg
      241 ccggactact cgaggccgca aaggtgttcg actttgtgac ctataccgtc ccggtcaacg
      301 cggccggaac ctatgatgtg aagattggga tcaagacgga tagcaaccaa ggcatgtttc
      361 agcttgcgat cgatggttcc aatcagggac tgcctcaaaa tgagtactcg cccgtacctg
      421 gttacaacct tctggatctt ggccctgtga catttgccga aaccgggaac catacttttc
      481 agttccaagt ttccggacgc gatgcaaata gcagcggcta ccagctgatt ttcgattaca
      541 tcgatttaga ccctcatccc gaagtcgagt cgctgccgat ccagacgaac tctccctaca
      601 ccgtcgtcac tgatccgaat ctgagtggcg gcaagggaat acttctccaa gcgactagtc
      661 agggcgaatc catcaacttt actgtgccag tcgcggtggc gggaatttat gatgtgagtg
      721 ttggaaccga gacgaacttc aacgaagggg tgtttcagct tgcaattaac ggcactcctc
      781 aaggctaccc acagaatgag ttcacaccga ctcttaggta tggcgctcgc gacctgggaa
      841 cagttacgtt aagcgcagga ccgcagtcat tccagtttac ggtcgcagga cgtgatccgc
      901 agagcggtaa ctataagctc gcatttgatt acatcgagct gactttggct actcactttg
      961 aagcggagaa ggtgcatgtg acggcgacag cgccgctccg ccgtgtcatt gatgcaaata
     1021 tgagtgggca atctggcatt attctcaacg ctacaaatgt gggcgacctc gccacctata
     1081 gtgtaccagt cccggtcgcg gggacatacg atattaaagt tggggta
//
LOCUS       DATCGC010001913         3265 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_424942, whole genome shotgun sequence.
ACCESSION   DATCGC010001913 DATCGC010000000
VERSION     DATCGC010001913.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3265
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_424942"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(120..518)
                     /locus_tag="VIJ87_18220"
     CDS             complement(120..518)
                     /locus_tag="VIJ87_18220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446363.1"
                     /translation="MKMSMGQSDAPVRAFEALLARYPLVFYFIITTIFNIVMFVIAAI
                     AFTVVMTWVFNNTKGSLFMAVLVHTSFDWVLAILNRLFPVPIVNDYGNNVLVLIGLGV
                     LVLVLIMLTRGRLGYERYREEVPYPAPAPA"
     gene            745..1074
                     /locus_tag="VIJ87_18225"
     CDS             745..1074
                     /locus_tag="VIJ87_18225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446364.1"
                     /translation="MKQIILMIIAGLLAAGCCSTKNDIQRLSTSDLQLRRYELMYCLS
                     MARTGWDKQPLESNAYNDVRADLEEKEAIEREITRRDVTDYHWPPSMTDRYVHDRCHC
                     RCWIAHL"
     gene            1130..1621
                     /locus_tag="VIJ87_18230"
     CDS             1130..1621
                     /locus_tag="VIJ87_18230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446365.1"
                     /translation="MRQLTAILTGLTLATIHTHAGSLDWLFDVANNDNIARTEAQSLV
                     WDGVPHPLSARFEKVDIVDKDWPFYLFHVVTTSPGAGIKRDRSSYLVCFKLTERATEF
                     HIVTVIQYVSDPPTEQEITIDKRLNSWPMSPPWKAEKIDLPRKIKPPGLNVVLDMCRG
                     SNQ"
     gene            complement(1710..2162)
                     /locus_tag="VIJ87_18235"
     CDS             complement(1710..2162)
                     /locus_tag="VIJ87_18235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446366.1"
                     /translation="MKSYIRRIAVAASLGISLLPALTPPAQSQTRPWWFYGCPKGAVA
                     QIPGAVPGPGTAGWTQYQSCLQQNLSVSPQQSAQITPILADEGQKVMAIRNNNSLSDA
                     QKIQEVKSLQKQSDPQLKALLSSAQYDKLKVVRYQAVRWITQKRLGWQ"
     gene            2653..3207
                     /locus_tag="VIJ87_18240"
     CDS             2653..3207
                     /locus_tag="VIJ87_18240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446367.1"
                     /translation="MNYFRDVSALHEVLGILYKKAPSEERRPELSRLLEEWGFTPDQA
                     SLYASTVLRRNAEGSADWMSTNAGHIVGSWIRGEQEGAAGSWLSTMKETWTFKIDLTY
                     EHKIEKYDSSITTGPFFQSSYSRPTANVQSGIWAPPDWILDRLDLFLMSSNGFARRMK
                     LEWLDNDNCDFRACSIDGQRFGRD"
BASE COUNT          808 a          812 c          877 g          768 t
ORIGIN      
        1 caagcgaaag gggtcagagt agggttgcat tgatttggcc tcgttctgcg cgagggtggt
       61 gtcaaacgca aacagtttta gcgcgccatt gccttttccg ttgcctatct tttctcccct
      121 tatgctggag ctggagccgg ataaggaact tcttcccggt aacgttcgta gcccaagcgg
      181 cctcgtgtta acatgatgag caccaatact aacaccccca ggccaatcag aacaagtaca
      241 ttattgccgt agtcgttcac tatgggaacc ggaaagagcc tgtttaggat cgccagaacc
      301 cagtcaaaag aggtgtgcac caacacagcc atgaacaggc tgcctttcgt gttgttgaag
      361 acccacgtca tgacaacggt gaacgcgatc gcggcaatga caaacataac gatgttgaaa
      421 attgtggtga tgatgaagta gaagaccaac ggatatcgag caagcagagc ttcgaaggcc
      481 ctaacgggag cgtccgattg ccccatactc attttcatgt ttgctgaaat ttttcctctt
      541 ttctttcgca gcaacatcaa acaggcttgc ggtcaccact tcaggaatcg ttggattcat
      601 ctactaattg agcggcgcaa tttctgtaaa ggcaaaacgc aactgaagcg gagtgtcgct
      661 attgaccgga ctttgggttt gtattaaggg aattcgtaac gcctgcattc agatcgtgca
      721 ggaatggacc ggaggagccg aagcgtgaaa cagataatat taatgataat agccggcctt
      781 cttgcggcag gctgttgttc aacgaagaat gacattcaac gtttatctac gtccgatctg
      841 caactgcggc gttacgaact catgtattgc ctgagcatgg cgcgcaccgg ttgggacaag
      901 cagccgttag aaagcaacgc ctacaatgac gtcagggcgg atctcgaaga aaaggaagcc
      961 atcgagcgag aaattacgcg ccgggacgtg acggattatc actggccgcc ttcgatgact
     1021 gaccgatacg tacatgatcg ttgtcactgc cgatgttgga tcgctcatct ttgaaataga
     1081 atcagggaga gctcatgtcg ttaacaagag agtcgatctg gcagttccta tgcgacaact
     1141 tactgctatc cttaccggac taacgcttgc cacaattcac acgcacgctg gaagtctcga
     1201 ttggcttttt gatgttgcta acaacgataa tatcgcccgc acagaagccc aatccttggt
     1261 gtgggatggt gtgccgcatc ccctctcagc gcgtttcgag aaggtagaca tcgtcgacaa
     1321 agattggcct ttttatctct ttcatgttgt aaccaccagt ccaggcgccg gaattaagcg
     1381 cgaccgcagc tcatatctcg tctgtttcaa gctgactgaa cgtgccaccg aatttcacat
     1441 agttaccgtg attcaatacg tttcagaccc gccgacagaa caggaaatta cgatagataa
     1501 gcgtcttaat agctggccaa tgtcgccgcc ttggaaagca gaaaaaattg atctaccgcg
     1561 caaaatcaag cctcctggct tgaacgtcgt gttggacatg tgtcgcggat caaaccagta
     1621 gcacgttagg tttcctgctg gtaacacaac agaaatatgc gaaaccgagc gcgacggatt
     1681 gcggcgtcaa atcgagaaac cccgtcctgt tattgccaac cgagtctttt ctgagtgatc
     1741 cagcggacgg cctgataccg gacgacttta agtttgtcgt attgagcaga tgagaggagc
     1801 gccttcaact gcggatcgga ctgcttctgc agggacttaa cctcttgtat cttctgagcg
     1861 tccgacagcg aattgttgtt tctaatcgcc atcaccttct gtccttcatc ggcaaggatg
     1921 ggcgttattt gggcactctg ctgaggcgac acacttaagt tctgttgtaa gcaactttga
     1981 tattgggtcc atcccgcggt gcctgggccc ggtacggcgc cggggatttg tgccacggcg
     2041 cctttcgggc aaccataaaa ccaccacgga cgtgtttggg attgagcggg cggagtgagc
     2101 gcgggcagta gagatatgcc cagcgatgct gccacggcga ttcgtcgaat gtagcttttc
     2161 atttcttaat ccttcccttc gactcaattg taacgatgcg ggcctggcaa ctcaagccgg
     2221 attcactgat tggtctctgc cacttgcggt acaggtttgc tcggctgaaa cgtgttcaaa
     2281 acgcacgacc ccgcaggcga attatgagca ttgtagcggt tcgtcgcatc aggtcacggg
     2341 cgctatcgtt tttccgcttg ctcccgccgg gactcctcgc taaaacgttg cgacgaaata
     2401 atcgggagag gcgatttgaa gatgaagaaa caaatcccaa atatcaatat ggttcgatcc
     2461 gcttggcgcc gaatcaaaaa cgacataaag gacgccataa ttcgtgacct gaaccctgtg
     2521 aaagatgtca aaggtggcgg ggggacgcgc cgtggggaat ccaaatccac tacaggcgag
     2581 ggcacccggg acaccagagg tggccattag tcaggaagaa agccgcacca tcgcgaattt
     2641 tcgtcggctt cgatgaacta cttccgtgat gtctcggcgc tgcacgaggt gcttgggata
     2701 ttgtacaaga aggcgccttc cgaggagaga cgccctgagc tatcccgact tcttgaagaa
     2761 tgggggttca cgccggacca agcgtcgctt tatgcttcga ccgtacttcg ccggaacgca
     2821 gagggctccg ctgattggat gtcaacgaat gcgggacaca tagttggtag ctggatacgg
     2881 ggcgagcagg aaggcgccgc cggatcatgg ctcagtacta tgaaggagac ttggacgttc
     2941 aagatagacc tcacctacga gcacaagatc gagaagtacg actcaagtat aacaactggg
     3001 ccgttctttc aatcgtcgta ttcacgaccg acggcaaatg ttcaaagcgg catttgggcg
     3061 ccgccggatt ggatactcga tcggttggat ctgttcttga tgtcttcaaa cggttttgca
     3121 cgccggatga agttggaatg gctcgacaat gacaactgtg atttccgggc ctgctccatt
     3181 gatggacaga ggttcggccg cgattgactg tggcagggtg aggacctaac gccaccgtga
     3241 atgtaatcgg atgtccaaag ggacg
//
LOCUS       DATCGC010001914         1006 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_259279, whole genome shotgun sequence.
ACCESSION   DATCGC010001914 DATCGC010000000
VERSION     DATCGC010001914.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1006)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1006
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259279"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..854)
                     /locus_tag="VIJ87_18245"
     CDS             complement(<1..854)
                     /locus_tag="VIJ87_18245"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY5446368.1"
                     /translation="MPLLSLTNISKRFGSTRAVNDVSLDVNKGEFFGLLGPSGCGKTT
                     TLRMIAGLELPDSGTVQFDNQNITNLPPERRGFGMVFQNYALFPHLNVFENVAFGLRA
                     RHKSKAEIEERVNSALELVQLPGYGKRRVDELSGGQQQRVAIARAIAIEPALLLFDEP
                     LSNLDVSLREETRGELRELVTRLGLTAVYVTHDQEEAFALCDRISVMVGGKLVQSGQP
                     RELYERPADISVARFLGRNNLIRSMRLSSSKTDDGEFKTLEGEHTLRTSVKHDELAPL
                     NKPVFLAIR"
BASE COUNT          235 a          266 c          262 g          243 t
ORIGIN      
        1 cgaattgcca gaaacacagg cttgtttagc ggggctagtt cgtcatgctt tactgaagtc
       61 ctgagtgtgt gttcgccttc caaggtctta aactcaccgt catctgtttt gctcgaactc
      121 agacgcatac tgcgaatcag attatttcgt cccaggaacc gcgcgactga gatgtccgca
      181 ggtcgttcat agagttcacg tggctggccc gattgcacca gtttgccgcc aaccatcacg
      241 ctgatacggt cgcacaaagc aaaagcctct tcctgatcgt gcgttacgta aaccgcagtc
      301 agtccgagcc gcgtgactag ttcacggagt tcgcctcggg tttcctcgcg cagcgataca
      361 tcaagattag acagtggttc gtcaaacaag agcagcgcgg gttcaatcgc aatcgcacgg
      421 gcgatggcga cacgttgctg ctgtccaccg gaaagttcat ctactcgtcg cttaccgtag
      481 ccaggtagct gcactaattc gagggcgctg ttgacgcgtt cttcaatttc agctttcgat
      541 ttgtggcgag cgcgcaagcc gaaggcgacg ttctcgaaca catttagatg tggaaacagc
      601 gcgtagtttt gaaagaccat tccaaaaccg cgtcgttcgg gagggaggtt agtgatgttt
      661 tgattatcga actgaacggt gccggagtca gggagttcaa ggcccgcaat cattcgcagc
      721 gtcgtagtct taccacaacc cgacggtccc aacagaccaa agaactcgcc cttgttgacg
      781 tcgagcgaga cgtcattaac ggcgcgagtc gagccgaagc gcttggaaat gttcgttaga
      841 gatagtagag gcatcttgtc tacgcgctaa tgaagaatgc attttccata tatcatttga
      901 cggttttcaa ttggtcattg cgaatcgatt aatgtgagcc acacgctacc gcgatgtggt
      961 actgactccc tacccaccgc gaacccgttc cactccgagc aagtga
//
LOCUS       DATCGC010001915         1213 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_60999, whole genome shotgun sequence.
ACCESSION   DATCGC010001915 DATCGC010000000
VERSION     DATCGC010001915.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1213)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1213)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1213
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60999"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1213
                     /locus_tag="VIJ87_18250"
     CDS             <1..>1213
                     /locus_tag="VIJ87_18250"
                     /inference="COORDINATES: protein motif:HMM:NF013736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY5446369.1"
                     /translation="IGIQGIARDISMRRRTEEALREADLRALSEYERLLERISGLAQV
                     LGTARELAAIFRGLRDFTRVSVPCDGFFVSLYDPIQDIRTACYAWGDGEELEVSELPV
                     MSVTSAGPNSRAVRTGQVIITNDYMSATRGQQTVIVGPDNGLRPKSSIAVPMAVMGRI
                     IGTIEVQSYKEGAYQQEHDTAMSLAANLTAVAIENVRLLRRESSAREAAEESNRLKDE
                     FLATVSHELRTPLTAILGWSRLLETEELEETMARQAIETIWRNAKAQSQIIDDILDVS
                     RIITGNLYLDLQPLELGPVVENAINVVRQTADAKGIRIEAEFDSAPAVVSGDANRLQQ
                     VIWNLMSNAVKFTNSGGSVSLKMAHQGSAVEISVRDTGAGISREFLPYVFDRFRQADS
                     STTRQHGGLGLG"
BASE COUNT          286 a          300 c          357 g          270 t
ORIGIN      
        1 gattggtatc cagggtattg ctcgcgacat cagcatgcgc cgcagaacgg aggaggcact
       61 gcgagaggcg gacctgcggg ctctctctga gtacgaacgg ttgttggaga ggatttcagg
      121 attggctcaa gtgctgggaa ctgcccgcga gctcgccgcc atctttcgtg gccttcgcga
      181 tttcaccaga gtctcagttc cttgcgatgg cttttttgtc tcgctttacg atccaatcca
      241 ggacattcga actgcctgtt atgcatgggg cgacggcgaa gagctcgagg tttctgagtt
      301 accggtgatg tctgtaactt ccgcgggacc aaacagtcga gcggttcgga cgggacaagt
      361 gatcattaca aacgactaca tgtccgcaac gcgaggtcaa caaacggtca ttgttgggcc
      421 agacaatggt ctacggccga agtcgtcgat cgcggttccg atggcggtca tgggaagaat
      481 catcggcaca atcgaggtgc aaagctacaa agagggcgct taccaacagg agcacgacac
      541 cgcgatgagc ctggcggcaa acctaacggc tgttgccatt gagaacgttc gtttgttgag
      601 gcgcgaaagc agcgcgagag aagcggctga agagtcgaac cgtttgaagg acgagtttct
      661 cgctaccgtc tcgcacgaat tgcgcacacc gctcacggct attcttggtt ggtcacgact
      721 gcttgagact gaggaactcg aagaaacgat ggcgcggcaa gcgattgaaa caatctggcg
      781 caacgccaaa gcgcaatcgc aaatcattga cgatatcctc gacgtctcac gaattatcac
      841 cggcaacctc tatttggatc tgcaaccgct tgagctgggt cccgtcgtcg aaaacgccat
      901 caatgttgtg cgtcagactg cggacgccaa gggaattcgt attgaagcgg agtttgatag
      961 cgctccggca gtggtctcag gagacgcgaa tcgactccaa caagtgattt ggaacctcat
     1021 gtccaacgcg gtgaagttta cgaacagtgg tgggtcggtt tctttgaaga tggctcacca
     1081 aggatcggcg gtagaaatta gtgtcagaga taccggtgca ggaattagtc gagagtttct
     1141 tccttacgtc tttgatcgtt ttcgtcaggc agacagcagt accactcgcc aacatggtgg
     1201 ccttggattg gga
//
LOCUS       DATCGC010001916         1191 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_30234, whole genome shotgun sequence.
ACCESSION   DATCGC010001916 DATCGC010000000
VERSION     DATCGC010001916.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1191
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30234"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            132..518
                     /locus_tag="VIJ87_18255"
     CDS             132..518
                     /locus_tag="VIJ87_18255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446370.1"
                     /translation="MSTNNNNEKPFTFRFIDTKPRVLLELKNTAEIALRSIEIMTIFL
                     KNDEHVQDGGAQTQIRFDVIKNMRPGDAAVLSHRTWINGTPVNDARDQMARLQLVAGE
                     FTPYVLDIQWENAEGKTRFQRIPVGH"
     gene            complement(537..752)
                     /locus_tag="VIJ87_18260"
     CDS             complement(537..752)
                     /locus_tag="VIJ87_18260"
                     /inference="COORDINATES: protein motif:HMM:NF020967.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2007 domain-containing protein"
                     /protein_id="HEY5446371.1"
                     /translation="MPEETIILKVFVTEMDANMAQDILQDDGIKAFVFKDDAGGMEPH
                     LQRTNGVRLVVKRVDADRARKILEPLL"
     gene            complement(786..1007)
                     /locus_tag="VIJ87_18265"
     CDS             complement(786..1007)
                     /locus_tag="VIJ87_18265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446372.1"
                     /translation="MTKANLLELKDDTAQDRSAPAEPATINSNQWIVVEPIPLRRVQR
                     LDVDAVLARSLPKVLANRDLAPRRKPLEN"
BASE COUNT          286 a          301 c          309 g          295 t
ORIGIN      
        1 gccatcggca aaaatgtgca tctcacgcgc cccgacaact tcaatcagtt gagaagcctg
       61 atcgcccgtt tgctgaatgg aaacggaatc ccgcttacag tgaatggtga cacccggttt
      121 aaaatgaatt tatgagcaca aataacaaca acgagaagcc ttttactttt agattcatcg
      181 acacgaaacc aagggtcctt ctggagttga agaacactgc cgagattgca ctcagatcca
      241 tcgagattat gacgatcttt ttgaagaacg acgagcacgt tcaggatggc ggagcacaaa
      301 ctcaaataag gttcgacgta ataaagaata tgcgtccggg tgatgccgcg gttttgtcac
      361 ataggacctg gattaatgga acgccagtca atgatgcgcg cgaccagatg gctagactgc
      421 aactcgtcgc cggtgaattc actccttatg tgctcgatat ccaatgggag aatgcggagg
      481 gtaagacgcg tttccagaga ataccagtcg ggcattaatc aaaaattcat attcagctag
      541 agcaagggtt cgaggatctt gcgggcgcgg tctgcgtcaa cccgtttgac taccaggcgg
      601 actccattcg ttcgctgcag atgaggttcc atcccaccag catcatcttt gaagacgaag
      661 gccttaatgc catcgtcctg gagaatgtct tgagccatgt tagcgtccat ttcggtcacg
      721 aacactttca ggataattgt ttcttccggc attgatttct tcctcgagac tattctccac
      781 ggcttctagt tctcaagagg tttcctgcgc ggggccaagt cgcgattggc cagtactttg
      841 ggcagcgacc gcgccagaac cgcatctacg tcgaggcgtt gcaccctgcg taaaggaatt
      901 ggttcgacaa cgatccattg attagagttg atggttgcgg gttcagccgg cgcggagcgg
      961 tcttgcgccg tgtcgtcctt taattcaagc aaattagctt ttgtcatatt gatcctactt
     1021 ctcgggtgca tctgactggc cttcaatgtc cttgaacagt gagtcgaacg ccggtaatga
     1081 ctcgctgtga tcagtttcct gaaactcgac gacccaggaa cggaccgact tcgaccactc
     1141 gtttgggccg atggctggtt gggctggctc ccgccgtcgc cggacgcggt c
//
LOCUS       DATCGC010001917         2593 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_362612, whole genome shotgun sequence.
ACCESSION   DATCGC010001917 DATCGC010000000
VERSION     DATCGC010001917.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2593)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2593)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2593
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_362612"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(21..533)
                     /locus_tag="VIJ87_18270"
     CDS             complement(21..533)
                     /locus_tag="VIJ87_18270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446373.1"
                     /translation="MTKEKLVTGLFKSKIAAESAVDAIIKRGYTRDDISVLMSDATRT
                     KEFGLQTRTHAADGLGIGGAVGGAVGAAVAAIVAVGTTLFLPGINLVIAGPIAAALAG
                     AGAGGAAGGLIGALIGAGIPEYRAKVYDAELRGGGILIGVEARADDKDEVDRLEELLG
                     ELGAQNVRTE"
     gene            934..2034
                     /locus_tag="VIJ87_18275"
     CDS             934..2034
                     /locus_tag="VIJ87_18275"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEY5446374.1"
                     /translation="MRILQISSASSFGGGERYLVDLSNSLRARGHDLFAALRPQSPLV
                     THLQLTPKNIRTLPLRNALDPQSARGLARLVKDEHIDVVHAHMARDYSLAAYACRSNR
                     QTKFIVTRHVLFPLNRLHRRTLARANKIIAVSAAVARQLKSQRLVPDERIALVPNGID
                     VDRFSAGRQAFDRNAFLEGKAIPPDCLLVSSIGELRTLKRHDDFIRAAAIVARELKNT
                     HFVVAGVDTSSSGENHKQLQELVAELELTDRVHFLGWLDDADKLLCATDVFVSASETE
                     SFGLSIAEAMAAGTAVVATQTEGAREIVEDQATGLLVPIGNVEQMAEAMLRLLGDEQR
                     RKAMGEKAITHVRERFSLKRMVDDIEKIYLDS"
     gene            2152..>2593
                     /locus_tag="VIJ87_18280"
     CDS             2152..>2593
                     /locus_tag="VIJ87_18280"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY5446375.1"
                     /translation="MSEVERIADQFRRAFDGQAWHGPSVLSILDGITAEQAAAHPIPG
                     AHSIWELTLHIAAWEGVCERRLRGDPAQLSDEEDWTKVEDSSEEAWSDAKKGLVASHL
                     ALFNAIAALDGSRLDEPIIKDSATQFSSVYVTLHGGVQHDLYHAG"
BASE COUNT          628 a          689 c          659 g          617 t
ORIGIN      
        1 tatcattaag tgatgagccg ctattcagtt cgaacgtttt gcgcgcccaa ctcgcctagc
       61 agttcttcga gtcgatctac ctcgtccttg tcgtcagctc gagcttcgac tccaatcaaa
      121 ataccgccac cgcgtagttc agcgtcgtag accttggcgc gatactccgg aatacccgct
      181 ccaatcaaag cgccaatcag tccccccgct gcaccgcctg ctccagcgcc agcaagagct
      241 gccgcgattg gtcctgcaat caccaggtta atccctggaa gaaacaatgt cgtacccacg
      301 gctacaattg ccgcaaccgc ggctccgaca gcgccaccaa ctgccccacc gataccaagt
      361 ccgtcggctg catgtgtcct cgtttgcaga ccaaattcct tggttctggt tgcgtctgac
      421 atcaacacgc tgatgtcgtc gcgcgtgtag ccgcgcttaa tgatcgcgtc gacggcagac
      481 tcagccgcga tcttgctctt aaaaagtcct gtcactaatt tttccttggt catacaattc
      541 cctcccaaca aacattcttc taatgtaaag aattggcaac agtcgtgccg actgacttgg
      601 gcgaaattct tatgaatcaa taaagtcagg accgtttaaa tcaaacactc gacatgtttg
      661 ctgtttgagt ttggtacgga gatgtctcat tctccccaag ctttagcttg gggttacggt
      721 gccctcagta gattcaggaa ccgtttcaac ggtttaccca ttgtgcgaat gaataagaac
      781 gtagaattaa ccttcggcgt agagcttgat tggcccaaaa ctcgtaaccc gttaaaacgg
      841 ttccacaaca ttgggttcct accgtaaccc caagctgaag cttggggaga atgagagttt
      901 tgccccaagc tctgaagcat atcgaacatt tgcatgcgta tccttcaaat tagttcggca
      961 tcatcatttg gcggtggcga acgctatctt gtggacctta gcaattccct gcgtgctcgc
     1021 ggtcatgatc tcttcgccgc actccgccca cagtctccac ttgttactca tcttcagctg
     1081 acaccaaaga acatcaggac tcttcccctt cggaatgcac ttgatcccca aagcgcacgc
     1141 ggcctcgcgc gtttagtgaa agatgagcac atcgatgttg ttcatgcaca catggcccgc
     1201 gactattcac tcgcggcata tgcatgccgg agtaatcgtc agacaaagtt catcgtaacc
     1261 aggcacgtgc tttttccact caaccgtttg caccgtcgca ccctcgcaag ggcaaacaaa
     1321 atcatcgcag tatccgcagc ggtcgcgcgt caacttaaaa gtcagcgact tgttccggat
     1381 gagagaattg cgcttgtgcc gaatggcatc gatgtcgatc gattttcggc tgggcgccag
     1441 gcttttgatc gaaatgcctt tctcgaaggc aaagcgattc ctcctgactg tttactggtt
     1501 agcagcatcg gtgagttgag aacactgaag cgccatgatg atttcattcg ggcagcagca
     1561 attgttgcgc gcgagttgaa gaacactcac tttgtggtcg ccggtgttga cacttcgtcg
     1621 tccggagaaa atcataaaca acttcaggag ctggtcgctg aactcgagct gacggatcga
     1681 gtccactttc ttggctggct cgatgatgca gacaagttac tgtgcgccac tgacgtattt
     1741 gtttcggcgt cggagacaga atcgttcggc ttgtccatag cagaggctat ggccgccgga
     1801 accgcggtag ttgcaactca gactgaaggg gcacgtgaga ttgttgagga tcaggcgacc
     1861 gggctgctcg ttccgattgg caatgttgag cagatggctg aagcaatgct ccgcttactg
     1921 ggagatgaac agcgacggaa ggctatgggg gagaaagcaa tcacgcacgt tcgtgagcgc
     1981 tttagtttga agcgaatggt agacgatatt gagaagatat atttggactc gtagcgatga
     2041 agtcagtacc acaacgcggt aacgtgtggc tcgccgaaca gtcttagagc cacacgctac
     2101 cgcgttgtgg tactgacttc atcgcgaatg aaacaagcgg aggtgagtac catgagtgaa
     2161 gtcgaacgaa ttgccgatca gtttcggcgc gcctttgatg gacaagcctg gcatggtcca
     2221 tcagtcttat ccatcctgga tggaatcaca gccgaacaag cagctgcgca tccaataccc
     2281 ggtgcccatt caatctggga gctcacctta catatcgccg cctgggaagg tgtatgcgaa
     2341 cgaagattac gaggtgatcc ggcacaactc agtgacgagg aagactggac taaagtggaa
     2401 gacagcagtg aggaggcatg gagcgacgcg aaaaaaggtc tcgtggcgag tcatctagca
     2461 ttgttcaatg caatcgcagc gctcgatgga tccaggctcg atgaaccgat catcaaggac
     2521 agcgctacgc aattttcgag tgtctatgta acgcttcacg gaggcgtgca acacgatctt
     2581 tatcatgctg gac
//
LOCUS       DATCGC010001918         1013 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_61098, whole genome shotgun sequence.
ACCESSION   DATCGC010001918 DATCGC010000000
VERSION     DATCGC010001918.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1013)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1013)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1013
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61098"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..596
                     /locus_tag="VIJ87_18285"
     CDS             <1..596
                     /locus_tag="VIJ87_18285"
                     /inference="COORDINATES: protein motif:HMM:NF012455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MIP/aquaporin family protein"
                     /protein_id="HEY5446376.1"
                     /translation="GIMGERLADGNVAVALLANTLATGAALVALILTFGPISGAHMNP
                     AVTLAAASMGELPWRDTPFYVVAQLVGAFAGVAVAHTMFRLPLLFASQHPRAGMAQAF
                     SEFVATFGLLAVIWGVTRTRPTAVAFAVAAYITAAYWFTSSTSFANPAVTLARSMSDT
                     FAGIRPSDAPGFIVAQLAGAAAATLIFRWLLPQNHNE"
     gene            589..1008
                     /locus_tag="VIJ87_18290"
     CDS             589..1008
                     /locus_tag="VIJ87_18290"
                     /EC_number="1.20.4.4"
                     /inference="COORDINATES: protein motif:HMM:NF013607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030612 - arsenate reductase (thioredoxin)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase ArsC"
                     /protein_id="HEY5446377.1"
                     /translation="MSNKQKVLILCTGNSARSQMAEGLLRSMAGERFEIASAGVSPSN
                     VRPEAIEAMRETGVDISNHRSKSVDEFLGQEFDYVITVCDNANEQCPVFPSKTKRLHW
                     SFEDPAAAEGNAADKLRVFIRVRDEIRSRLEEFVKAV"
BASE COUNT          209 a          264 c          285 g          255 t
ORIGIN      
        1 ccggcatcat gggggaacgc ttggcagacg gcaacgtcgc tgtcgctttg ctagcaaaca
       61 ccctcgccac tggcgccgcg cttgtcgccc ttatcctcac gtttggacca atctcgggcg
      121 cacatatgaa tccggcagtc accttggcgg cggctagcat gggagaactt ccatggcgtg
      181 acactccgtt ttatgttgtc gcgcagcttg tcggcgcgtt tgcaggcgtt gctgttgcgc
      241 acaccatgtt tcgcttaccc ctgttgtttg cgtcccaaca tccacgagcg gggatggccc
      301 aggccttcag cgaattcgtc gccacctttg gactactcgc tgtcatctgg ggtgtgacac
      361 gaactcgtcc aacggctgtt gctttcgcag tcgctgcgta catcacagca gcttactggt
      421 ttacgtcgtc aacatccttt gcaaacccgg ctgtcacact tgctcgatcg atgagcgaca
      481 cctttgccgg cattcgtcct tccgatgccc ccggcttcat tgtggctcaa cttgctggtg
      541 ctgcggctgc gacattaatc tttcgatggc tattgcctca aaatcataat gagtaataag
      601 caaaaagttc tgatcttgtg tacaggcaac tccgcgcgca gtcagatggc tgaaggtttg
      661 ttgcgtagca tggctggtga gagatttgag atcgccagcg cgggtgtttc gccgagtaac
      721 gttcgaccgg aagcgatcga ggcgatgaga gagactggtg tcgacatatc gaaccatcgc
      781 tcgaagtcag tcgacgagtt tttgggacag gagtttgatt acgtgatcac agtttgtgat
      841 aacgcaaacg aacagtgtcc ggtctttccc agtaagacga aacggctaca ttggagcttt
      901 gaagatccgg ctgcagctga ggggaacgct gcggataagc taagagtgtt tattcgcgtc
      961 cgtgatgaga tcagaagcag gcttgaagag tttgtaaagg cagtttagta gcc
//
LOCUS       DATCGC010001919         1007 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_227095, whole genome shotgun sequence.
ACCESSION   DATCGC010001919 DATCGC010000000
VERSION     DATCGC010001919.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1007
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227095"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..126
                     /locus_tag="VIJ87_18295"
     CDS             <1..126
                     /locus_tag="VIJ87_18295"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015742582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEY5446378.1"
                     /translation="GGKSRLVCPANLAYGDRGSPPVIKPGATLVFEVELLDIVKQ"
BASE COUNT          242 a          270 c          240 g          255 t
ORIGIN      
        1 ggtggcaaga gccgcttagt gtgcccggcc aacttggcct atggcgatcg cggatcaccg
       61 ccggtgatta aaccgggcgc tacgctcgtc ttcgaagtgg aattactgga tatcgtcaag
      121 cagtagaaag gaccgatgtg aattggaagc gagtcggcgt gcgggctttc tgtaggccgc
      181 gcgccgactt actcctagtc attgaaaggg aaattagttc ttgtaaaaat gattgctggt
      241 cgtccagata tcggcccccc tatttcttct atttctcgga catcctcctg gaagattccc
      301 ccgcaatggt gcgtttgaga aggccgctgg aaacttcctc ggcgcgggtt atcaccgcaa
      361 tcgtcatcac ggattgcttt aaaaatactc gtctcgacat attccctcct ctctatcgct
      421 ctccagaacg tcttcctttc atagcgaacc cacagcaaaa aagaggccag tgaaagacct
      481 cctggctcaa tcgcctcgaa cgataagttt ccctgaaaaa tccttcaact ttctccccgc
      541 attggcgtat tcgacccgtg gctatcaggc atcttgtcct cgcaagtcgg ttgtgaagac
      601 gaatcgtact gtcttctgat caagaccggt acattgtgcc tggaagtttc tgccgctgtt
      661 gagcagcacc tcactgcctg cattgcttct gtcctctgga ggcaagacag cccacctgtg
      721 tcatgagaca gtagaagacc gtctcatacc ggcctcggct agatcgtcat aatctctaag
      781 ctaatgatac tacttacaaa atctgaattt tgtcagtggg cacgccatat gaaagacaca
      841 cgggcataca ccttaaggag gctagaatgt taaaccaaag taccatgacg ctggatacgc
      901 gatcttcgtt gaatattcac gatttgcatt cactgatcga gtcacgcaaa agtcccggta
      961 tagtcattct gaatgggccg ggcgaagtgc tgcatctcaa cgatccg
//
LOCUS       DATCGC010001920         1317 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_95130, whole genome shotgun sequence.
ACCESSION   DATCGC010001920 DATCGC010000000
VERSION     DATCGC010001920.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1317)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1317)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1317
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95130"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1260)
                     /locus_tag="VIJ87_18300"
     CDS             complement(<1..1260)
                     /locus_tag="VIJ87_18300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446379.1"
                     /translation="MVVVLMATMFRSAPLMAFALRQLGATVGHNLQYGTNVNLSGPLD
                     LITIEDDVAIQTGAYIHTTRWSGQNLHVGPVHIESGCKIGMQAAITCNVAVGRGTWIT
                     PFTPILSDVGSHEMWEGSPAKLTGRCLELKRTADICQYSYPIWLLETLNVLMQIFLFL
                     LLNVVPTTAIFLFVREFTFAGKTALSDAYFNATPLLELVWRLALDAFITTWVAIVVIS
                     LLDCLFIRFTAASPGIFPSHGLKGSLLIYRMHMMNSIQRLWGWTITGQYMRALAGMRF
                     SRVGASECDLMFNLIPEVTTADAGVFWSNGCFTNVLDCCANHFQLRQLDMPRNFFSGN
                     NSVAEHGRLPTNFLLGVSTPVSDIQFRQQMRSRLGESITVAGNPPVKFASTSFQSENE
                     TNMRPGFPIFLTRVFLNDLFSMGTLPIT"
BASE COUNT          327 a          332 c          371 g          287 t
ORIGIN      
        1 ggtgataggc agtgttccca tgctgaagag gtcgtttaga aagaccctgg tcagaaagat
       61 ggggaacccg ggccgcatgt tggtttcatt ctcagactga aatgaggtgc tcgcaaattt
      121 tacgggcggg tttccagcga cggtgatcga ctcaccaagc cgcgagcgca tctgttgtcg
      181 aaattgtata tcgctgacgg gggtggaaac tcccaggagg aagttggttg gtaaacgccc
      241 gtgctcagcc acgctattgt taccgctgaa aaaattcctg ggcatgtcga gttggcgcag
      301 ctgaaagtga ttggcgcaac agtcgagcac gttagtgaaa catccattag accagaacac
      361 cccggcatct gcggttgtaa cctccggaat taggttgaac atgaggtcgc attccgaagc
      421 ccccaccctc gagaaccgca tgccggcgag tgcccgcatg tactgtccag tgatggtcca
      481 accccagagt ctctggatgc tgttcatcat atgcattctg tagataagga gagacccttt
      541 gagtccgtgc gaagggaaaa ttcccggtga tgctgctgtg aaacggatga agaggcagtc
      601 caacaaagag atcacaacga tagcgaccca ggtggtgatg aacgcgtcga gggccagacg
      661 ccaaacaagt tctaatagtg gtgtcgcatt gaaatatgcg tcggacagcg cagttttacc
      721 ggcaaaggtg aactcacgga caaacaaaaa gatcgcggta gtggggacaa cattgagcaa
      781 taagaatagg aagatctgca tgaggacgtt gagtgtttct agcaaccaga tcggatacga
      841 gtattggcag atgtcagccg tgcgcttcag ttccaggcat cggcctgtga gcttcgctgg
      901 agatccttcc cacatctcat gcgaacccac gtcgctgagg atgggagtaa acggagtaat
      961 ccaggttccg cgacccacag caacattgca tgtgatggcg gcctgcattc cgatcttgca
     1021 accgctctcg atgtgaactg gaccaacgtg caggttttgc ccggaccacc tcgtcgtatg
     1081 aatgtacgct cccgtctgga ttgcgacatc gtcctcgatg gtgatcaagt caagagggcc
     1141 ggacaggtta acatttgttc catactgaag gttgtggccc acggtcgcgc ctagctgccg
     1201 taacgcgaat gccataagcg gtgcgctgcg aaacatcgta gccatcagga cgactaccat
     1261 gttctccatc cttccgatgc accagatccg cagatgcatt ctgctccact tagggta
//
LOCUS       DATCGC010001921         1446 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_195648, whole genome shotgun sequence.
ACCESSION   DATCGC010001921 DATCGC010000000
VERSION     DATCGC010001921.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1446)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1446)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1446
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195648"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..960
                     /locus_tag="VIJ87_18305"
     CDS             <1..960
                     /locus_tag="VIJ87_18305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446380.1"
                     /translation="QCFRCHAPHVREFPEQVQHFIDEAKSGDPLLDGVGCAQCHLIKQ
                     VDRAKHPPEPKYDIENKTVYGPYKDFVQNLAHQSMELALFQESGLCLNCHQSVPSAAN
                     LGKTNDLLGNWDQNKAVKSGKVCQTCHMPEQIGESANGEKKRRVANHTFPGRIGKLRQ
                     EAAKLDVQTKVDGEKTMVTVKVQSLVPHNLPATHPAWASLLLDLDIKGKNLKTVFTDK
                     RVYGRVYQDAKGQKTSFDFEAVKVLEDTVLKAEETRVETFIFPTPKDTKTFDVEVTLN
                     YAPLTGPASFIQRVEVESARGSMDPVFQPIEIIKYVENIPVGR"
     gene            complement(1203..>1446)
                     /locus_tag="VIJ87_18310"
     CDS             complement(1203..>1446)
                     /locus_tag="VIJ87_18310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446381.1"
                     /translation="DPITVRILRSVVSQVPYEVIAPVLSVSGMERFTTMPNFVIVRVG
                     GNRRGRGAGLYFSGGTDIQQREAVTRQPRLQKLCDR"
BASE COUNT          376 a          361 c          382 g          327 t
ORIGIN      
        1 caatgctttc gctgccatgc tccgcacgtg cgtgagttcc cggagcaggt tcagcatttt
       61 atcgatgagg ccaagtctgg cgacccattg ctggatgggg tgggctgcgc gcaatgtcac
      121 ttgattaaac aggtcgatcg agccaaacat ccgccggagc ccaagtacga tattgagaac
      181 aagacggtct atggcccata taaggatttc gtgcagaacc ttgcgcatca atcgatggag
      241 ctggcactgt ttcaagagtc aggcctctgc ctcaattgcc accagtccgt cccttcggct
      301 gctaacttag gaaagaccaa tgatcttcta ggcaattggg atcagaataa ggcggtcaag
      361 tcaggcaaag tatgtcagac ttgtcacatg ccggagcaga ttggtgaatc agcaaacgga
      421 gagaaaaagc gaagagtcgc aaaccatacg tttcccggtc gtatcgggaa acttcgccag
      481 gaagcggcca agttggacgt ccagacgaaa gtcgacggcg agaagaccat ggtcacagtg
      541 aaagtgcaaa gcctcgttcc gcataatctt ccggccaccc atccagcctg ggcgtctctg
      601 ttgttggacc tggatatcaa agggaaaaat ctgaagaccg tctttaccga taagcgggtc
      661 tatggccgag tctatcagga cgccaagggc cagaagacaa gctttgattt tgaggcggtc
      721 aaggtccttg aagacacggt cttgaaggcg gaagaaacac gtgtcgagac atttatattc
      781 cccacgccga aagataccaa gacgttcgat gtcgaggtga ccctcaacta tgcgcctctt
      841 acgggtcctg cctcatttat ccagcgggtc gaagtcgaat ccgcgagagg gtcgatggac
      901 ccggtttttc agccgatcga gatcatcaag tacgtcgaga atatcccggt tggtagataa
      961 ccttgctcgt ggttcgaaaa gcgtatctcg ccgaacaccg tagtctttca gttatgcgaa
     1021 acacgcacga cgcttcacga gatatgcttc actcaaagat cacgcgggag ccaggcgact
     1081 tcatcttaaa tatctgaacg gcgttataca tacccttggc cggatggttg aggataaggc
     1141 gggaattggt aatgtgggtg tcgagcagct catattggcc accgctgaaa tagatatcac
     1201 agtcatcgat cgcacagttt ttgtagacgt ggttgtcgag tgacagcctc gcgttgctga
     1261 atgtctgtcc ctccactaaa atataatccg gcgccacgcc cacgacgatt tcctccgacg
     1321 cgcactataa caaagttggg cattgtcgta aacctttcca ttccggaaac cgataagaca
     1381 ggtgcaataa cttcgtatgg aacttgggac acaactgagc gtaatatccg tactgtaatg
     1441 gggtca
//
LOCUS       DATCGC010001922         1215 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_158931, whole genome shotgun sequence.
ACCESSION   DATCGC010001922 DATCGC010000000
VERSION     DATCGC010001922.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1215)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1215)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1215
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158931"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..764)
                     /locus_tag="VIJ87_18315"
     CDS             complement(<1..764)
                     /locus_tag="VIJ87_18315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446382.1"
                     /translation="MINRFLTIGAIVAVLALPALAKNLAANEFAFQDQCTEENKNTYY
                     ATFRENLKTDQDKAYENAKKYLACPAEGATEQTQAIIKYLKNFVTKYEDLHEKDRLPV
                     LLYNERKYPEAYDLGMKILAREPENLKILIDLGANGYLVQNLKNPTLSAEAVKDAKKA
                     LAMLESGKTLDAWTPLSGKDEAMAYLNYTIGVFSLEADPSGALKNLIKAAQFETPLKK
                     SPQTYALIGAAYENGPYAKLSDEYTKTYGGKDETPE"
BASE COUNT          275 a          298 c          298 g          344 t
ORIGIN      
        1 ctttcaggag tttcgtcctt gccaccatag gtcttggtgt attcgtcgga gagtttcgca
       61 tacggaccat tctcataagc ggcgccgatc aacgcgtatg tctgcggtga cttcttcaac
      121 ggagtttcga actgagcggc ctttatcaag ttcttaagcg caccagatgg atcagcctcg
      181 agcgagaaaa caccgatcgt gtagttgaga taagccatcg cttcgtcttt gcccgagaga
      241 ggagtccacg catcaagcgt cttaccagac tcgagcattg cgagtgcttt cttagcgtct
      301 ttcaccgcct cggcgctgag cgttggattc tttaaattct gaaccaggta accattggct
      361 cccagatcaa taagaatttt caggttctca ggttcacgag caaggatctt cattcccaga
      421 tcataagctt ctggatactt gcgttcgttg taaagaagca ccgggagtct gtctttctca
      481 tgaagatctt cgtacttagt aacaaaattc tttaggtact tgataatggc ttgagtttgc
      541 tcggtggctc cctccgccgg gcaagccaag tacttcttcg cgttctcata cgctttgtct
      601 tgatccgtct tcaaattttc tcggaaagtc gcgtagtagg tattcttgtt ctcttccgta
      661 cattggtcct ggaaggcgaa ttcgttcgcg gcaagatttt ttgccagagc gggtagggcg
      721 agtactgcga cgatcgcgcc tatagttaaa aacctattaa tcattttcat cagtcgtccg
      781 aacctccaaa tcattcttca caaaatccgg gcgagggcca agccccagaa gcgtcgccac
      841 aggaatcttt aggatgcgag tattacagag agcggttgcc gtttttgtgc accagagacg
      901 gatgcatcac tttggttaat tacctatccg gcaaaaagaa cgagcgcaat attcctgcaa
      961 ctttatttga tgtgtcaagg cgacaaacac caaaaaaagt cgcgccggaa gaaaattctt
     1021 ccggcgcgtt tgaaatcaat gaatcctaca ctcgattatt gctgattcgg ctgggctcga
     1081 cgcggtcgtt gttcacttga cggcgagaca gttgccggcg tctttgcggt ggcgctcggc
     1141 tgagtggtag tgttcgtttg cggtgcgacc ggcttctttt caatcgtcat caatacacgc
     1201 ttgacggtgt tcttc
//
LOCUS       DATCGC010001923         1379 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_294690, whole genome shotgun sequence.
ACCESSION   DATCGC010001923 DATCGC010000000
VERSION     DATCGC010001923.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1379)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1379)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1379
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_294690"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1236)
                     /locus_tag="VIJ87_18320"
     CDS             complement(<1..1236)
                     /locus_tag="VIJ87_18320"
                     /inference="COORDINATES: protein motif:HMM:NF044450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HEY5446383.1"
                     /translation="MKTPLTRRGFLKTSTLAAGAGLTLSKALKTVIADTSTRPESSNE
                     PGTVSLQLLDGKALSLDSGVSFGVPWPQGSVKRNETFALTANGKHLPVQSWPLAYWPD
                     GSLKWSGFSTVVPAGLARPLTLSAGHSQSSGSLQLTNDGKTISIDTGALKCVIPVAGG
                     ANLVDSMTVEGRAVVGAGQLVCILQNGPQTNPEDAPSRERFLSQVKKVNVEQSGPVRA
                     VVKFEGVHKGATSEREWLPFIVRLYFYSGQTSVRMVHTITFDGDQEKDFVRGLGVQFA
                     VPLREEARNRTVRFVSAEGGVWSEPLQPGGGSVAQETGQPFTGRGEFASNAVWDDFKL
                     SQTSPEGFTIQKRTNPKSTWLSSAAGKRASGLAFVGDLTGGLALSVKNFWQSYPSALE
                     VRHASSPVADLTAWLWSPDG"
BASE COUNT          308 a          396 c          348 g          327 t
ORIGIN      
        1 accgtcaggc gaccatagcc acgccgtaag atcggcaacc ggactgctcg catgtcggac
       61 ctcgagcgct gacggatacg actgccagaa attctttaca ctcaacgcaa gtccacctgt
      121 caggtctcca acaaacgcta aacccgaggc gcgcttgcct gctgcggaag agagccaggt
      181 acttttcgga ttcgtacgtt tctgaatcgt gaatccttct ggacttgtct gcgaaagttt
      241 gaagtcatcc cagactgcgt ttgatgcaaa ttcgccacga ccagtgaaag gctgccctgt
      301 ttcctgtgcg acactgccac ctccaggttg aagaggttca gaccacacac ctccttcagc
      361 actaacgaat cgcaccgtgc ggttccgtgc ttcttcacgt agcggaacag cgaactgcac
      421 acctaagccg cgcacgaaat ctttttcctg atctccatcg aacgtgatcg tgtgcaccat
      481 gcgtactgat gtctgaccac tgtagaagta aagtcgcacg atgaacggta gccactcacg
      541 ctccgacgtc gctcctttat gaactccttc gaacttcacc actgctctga ccgggcccga
      601 ctgctccacg tttactttct taacctggct aagaaacctt tccctggagg gtgcatcctc
      661 agggttcgtt tggggtccgt tctgcaaaat gcaaacaagc tgcccagcgc caacgactgc
      721 gcgaccttcg actgtcatcg agtcgactag atttgcgcca ccagcaaccg ggatcacgca
      781 tttcagtgca ccagtatcaa tcgagatcgt cttgccatca ttcgtgagct ggagtgaacc
      841 agaactttgt gaatgccccg ccgacaaagt caacgggcgt gcgagtccag caggtacgac
      901 cgttgaaaac ccgctccact tgagcgagcc gtcgggccag tatgcaagag gccaagattg
      961 cacaggcaga tgtttgccat tagcggttaa ggcaaaagtc tcattgcgtt tgacggagcc
     1021 ctgcggccag ggcactccaa aactcacccc tgaatcgaga ctcaaggctt tgccgtcgag
     1081 caattgcagg gacacagttc caggctcgtt cgagctttct ggccttgtag acgtatcggc
     1141 aataaccgtc ttcagcgcct tcgatagagt taagccagca ccggcggcga gcgtcgatgt
     1201 ttttaaaaag ccgcgtcgcg taagtggagt tttcatatgg acgggattat ctgcatagct
     1261 gggatttccg caattgcttt tcgcatatgc cgaggtgttt ttgatttctg ttggttttgc
     1321 ggctgtgccg cctcccgtgc ggaaagcttc cggctttccg ttttagcctt agaaaggta
//
LOCUS       DATCGC010001924         1296 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_95161, whole genome shotgun sequence.
ACCESSION   DATCGC010001924 DATCGC010000000
VERSION     DATCGC010001924.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1296
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95161"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            175..>1296
                     /gene="dnaN"
                     /locus_tag="VIJ87_18325"
     CDS             175..>1296
                     /gene="dnaN"
                     /locus_tag="VIJ87_18325"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HEY5446384.1"
                     /translation="MELVVRKNELLRELQLFQGIVERKNTIPILANVLIEAKGDEVRM
                     LATDLEVALRSRCHAAVAKSGSLTLPAKKLYEIVKALPETDVRIEQDRNGVKVAADRF
                     DSRMQTLPREDFPTLPEVSGRARATLPRAAVKEMVSKTQYAITGEDTRYFLNGAKFIL
                     RPDSLTLVATDGHRLALVQVEYQTGVDQEVGVILPKKTLLELGKLLSEGEGDIQFESG
                     ENHLFFEVAGRVLISRMIDGQFPAYERVIPKGNDKTIEFDRERLTSAVKRVALLSNER
                     SRAVKFEVDKGKVDVTSSSSEFGEAHEQLPVEYSGPVLTISFNAQYVLDFLNVVETDV
                     VSLSLKDDVSQAVMKPVGAQGYDYTYVIMPMRIWAGSIES"
BASE COUNT          304 a          334 c          358 g          300 t
ORIGIN      
        1 caccctaact tattgaaagt caagccttaa tgcgatttgt tgagttttgc acgaacctct
       61 atttcttgta taattcttta tctcttctga tcactttcag tagagataac cgccacaccc
      121 acgctggctc cgttaacgcg gctgcacggc tctgctcgag gtcatcacaa agctatggaa
      181 cttgttgtcc ggaagaatga gcttctgcga gaactacaac ttttccaagg catcgtcgag
      241 cggaagaaca ccattcccat tctcgcgaac gttctcatcg aagccaaagg cgacgaggtt
      301 cgaatgctgg ccaccgatct cgaagtcgcg ttgaggagcc gttgccacgc agcggttgcg
      361 aaaagcggct cgttgacact gccagcgaag aagctttacg agatcgtcaa agctcttcct
      421 gagaccgatg ttcgaatcga gcaggatcgg aatggcgtca aagttgcggc tgatcgcttt
      481 gactccagga tgcagacact accccgtgaa gacttcccga cgttaccgga ggtaagtggt
      541 cgcgcacgcg caacgttgcc gcgagcggct gtgaaagaga tggtgtcgaa gacgcaatat
      601 gcgatcacag gggaagacac acggtatttc ctgaatggag cgaagttcat tcttcgaccg
      661 gacagcctta ccctcgtggc aacagacgga catcgcctcg ccctcgtgca agtcgagtat
      721 cagaccggtg tcgatcagga agtgggtgtc attcttccaa agaaaacctt gctcgaactt
      781 ggcaagttgc tttctgaggg ggaaggtgac attcaattcg agagcggtga gaaccacctt
      841 ttcttcgagg tcgccggccg cgtgttgatt tcgcggatga tcgacggaca gtttccagcc
      901 tatgagcgcg tgattccgaa gggcaacgat aagacaatcg agttcgatcg cgagcgtctg
      961 acgagtgcgg taaagcgcgt cgcgctcctc tccaatgagc gatcgcgggc cgtcaagttc
     1021 gaagttgaca aggggaaggt ggacgttacg tcgagcagct ccgagttcgg ggaggcgcac
     1081 gaacagcttc ccgttgaata ttccggtcct gttttgacga tttcgttcaa cgcccagtat
     1141 gtcctcgatt tcttgaatgt tgtcgaaacc gatgtcgtct cactatcgct caaagacgat
     1201 gtcagccagg ccgtgatgaa acccgtcggt gcacaagggt acgactatac ctacgtgatc
     1261 atgccgatga ggatttgggc ggggtccatt gaatcc
//
LOCUS       DATCGC010001925         1159 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_259404, whole genome shotgun sequence.
ACCESSION   DATCGC010001925 DATCGC010000000
VERSION     DATCGC010001925.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1159)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1159)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1159
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259404"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(94..>1159)
                     /locus_tag="VIJ87_18330"
     CDS             complement(94..>1159)
                     /locus_tag="VIJ87_18330"
                     /EC_number="5.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF008277.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016857 - racemase and epimerase activity,
                     acting on carbohydrates and derivatives [Evidence IEA];
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aldose epimerase family protein"
                     /protein_id="HEY5446385.1"
                     /translation="GVQKKDFGKTPEGQNVDIYTLTNSRGAEAKITNYGGIVTSLKVP
                     DRTGHLSDVVLGFDNLDAYLKGHPYFGALIGRYGNRIAKGRFSLNGVEYKLAVNNGAN
                     HLHGGLKGFDKVLWNARPLKVANGAALVLTYQSKDGEEGYPGNLSVKVTYTLTNLNEL
                     KIEYSATTDKDTVINLTHHSYFNLAGQGEGDILKHSLFLNANRFTPTDEGSIPTGELR
                     SVRKTPFDFLQATEIGARINQPDQQLQFGKGYDHNFVLNGKMGTMRLGARVYEAGTGR
                     VMEVWTTEPGMQFYTGNFLDGTLTGIDGKVYQQRYGFCLETQHYPDSPNQPKSPSTVL
                     RKGARYHTVTVYKFSTRPAK"
BASE COUNT          246 a          291 c          313 g          309 t
ORIGIN      
        1 tctctgtgct tacgtctgtg cctctgtggt gaaataggta ttaaaacagc tcaccacaga
       61 gacaaagaga cttcactgag acacagagaa atcttacttc gccgggcgag ttgaaaattt
      121 gtagaccgtt accgtgtgat agcgcgcgcc ttttctgagc acggtgctgg gagattttgg
      181 ttgattcgga gaatcgggat aatgctgggt ctcgagacaa aagccataac gctgttgata
      241 cactttgccg tcgatgccgg tgagcgtgcc gtcgagaaaa ttccccgtgt agaactgcat
      301 gccgggctcg gtggtccaca cttccatcac ccgcccggtg cccgcttcgt aaactctggc
      361 gcccagacgc atcgttccca tttttccatt gagcacaaag ttgtgatcgt aacctttgcc
      421 gaattgcaat tgctgatcgg gttggttgat gcgcgcgccg atctcggtcg cttgcagaaa
      481 gtcgaaagga gttttgcgca cacttcgtaa ttctcccgtc gggattgatc cttcatcggt
      541 cggcgtgaac cggttcgcat tgagaaatag actgtgtttg agaatgtcgc cttcgccctg
      601 accggcgaga ttgaaatacg aatgatgagt gagattaatg acggtgtctt tgtcggtggt
      661 cgctgaatat tcaatcttca gctcgttcag gttcgtcagg gtgtaggtga ctttgactga
      721 gagatttccc ggataacctt cttccccgtc cttactttga taagtcaaaa ccagcgcggc
      781 gccgttagca actttcaaag gccgcgcatt ccacaatacc ttgtcgaacc ctttgaggcc
      841 gccgtgcaaa tggttggcgc cattgtttac tgccagtttg tattcgacac cgttgagact
      901 gaagcggcct ttggcgatgc gatttccata gcggccgata agcgcgccaa agtagggatg
      961 gcctttgaga taggcgtcga ggttgtcgaa gccgaggacg acatcgctta gatggccagt
     1021 tcgatccggc accttcagcg aggtgacgat ccccccatag ttggtaatct tcgcttcggc
     1081 gccgcgactg ttcgtcaaag tgtagatgtc gacattttga ccttccggtg ttttgccgaa
     1141 atccttcttt tgcacgccg
//
LOCUS       DATCGC010001926         1314 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_362703, whole genome shotgun sequence.
ACCESSION   DATCGC010001926 DATCGC010000000
VERSION     DATCGC010001926.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1314)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1314)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1314
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_362703"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(60..>1314)
                     /locus_tag="VIJ87_18335"
     CDS             complement(60..>1314)
                     /locus_tag="VIJ87_18335"
                     /inference="COORDINATES: protein motif:HMM:NF014218.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NCS1 family nucleobase:cation symporter-1"
                     /protein_id="HEY5446386.1"
                     /translation="ILLGNIIVLIPILLNSHPGTKYGIPFPVFARGAYGTLGSNVPAL
                     MRAIVACGWFGIQAWIGGEALHTLFKAIIPGWQTILGGPIGGHTPTEWLSFLLFWGFN
                     IYIIYRGMDLLRKVENWAAPSVLVMTALLLGWAIWKARGLGYLLNQQSKFHSFGEFWP
                     LFIISLTGMIGFWATLSLNMPDFTRFGKSQRDQAVGQVVALPTTMTVFAAMGVMITSA
                     AVVIYPHMKPEELWDPMKLVGQFQSVVVIAISMFTVVVATLAVNIAANVVSPANDFAN
                     AFPKWISFRTGGLITGIVGILMQPWRLLADPSGYIFAWLVGYSGGLGAIAGVLIIDYW
                     VVRQKRLELGDLYRRQGAYTYNGGWNWRAIIATLIGCGLAWIGLVVPALAPLYAYAWF
                     VGFGAAGFTYYLLMKTMPPTSTVQT"
BASE COUNT          353 a          381 c          315 g          265 t
ORIGIN      
        1 cgctgcccct tcccagcttg ttcaatccac agcagcaccc ttgcccctac ctaagtgttt
       61 catgtctgaa ctgtcgaagt tggtggcatt gtcttcatca aaaggtaata cgtgaatccc
      121 gccgcaccaa atccgacgaa ccatgcatag gcatacaacg gtgcgagtgc cggaacaaca
      181 agaccaatcc atgccaaccc acaaccgatc agcgtcgcta tgatcgcacg ccagttccaa
      241 ccgccgttgt aagtgtatgc accttgtcgg cggtaaagat cgcccagctc gagacgcttc
      301 tgacgaacca cccagtagtc gatgatcaat acgcccgcga tagcaccgag accaccggag
      361 tatccgacca accaggcgaa gatgtaaccc gacggatcag caagtaatcg ccacggctgc
      421 atcagaattc cgacgatgcc tgtgatcaaa ccgccggtcc gaaatgaaat ccacttcgga
      481 aatgcatttg caaaatcatt ggccggtgaa acgacgttgg ctgcgatgtt cactgcgagt
      541 gttgcaacaa ccacggtgaa cattgaaatg gcgattacaa ctacgctctg aaactgccca
      601 accagtttca tcggatccca caactcttcc ggtttcatgt gcggataaat cacgacagct
      661 gcggaagtga tcatcacacc cattgcggca aacacggtca tcgtcgtggg gagtgcgacg
      721 acctgtccca ctgcctgatc gcgttggctt ttcccgaagc gagtaaagtc aggcatgttc
      781 agcgacagcg ttgcccagaa gccgatcatt ccagtcaacg aaatgatgaa caaaggccaa
      841 aactctccga agctgtgaaa cttgctctgt tgattcagga gatagccgag acctctggcc
      901 ttccaaattg cccagcccag caacaacgcg gtcatgacta acacagacgg cgcggcccag
      961 ttttcaactt tcctgagcaa gtccatgccg cgatagatga tgtagatgtt gaagccccag
     1021 aataaaagaa acgacaacca ctcggttggt gtgtgaccac cgatcgggcc gccaagaatt
     1081 gtttgccatc cgggaatgat cgctttgaat agcgtgtgaa gagcttcacc gccaatccat
     1141 gcctggatgc caaaccaacc acacgccaca atcgccctca tcagcgccgg cacatttgaa
     1201 cccagcgttc cataggctcc gcgcgcaaag accgggaagg gaattccgta ctttgttccg
     1261 ggatgagaat tcaggaggat cggaatcaaa acgatgatgt tgcccagtag gatt
//
LOCUS       DATCGC010001927         2163 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_227179, whole genome shotgun sequence.
ACCESSION   DATCGC010001927 DATCGC010000000
VERSION     DATCGC010001927.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2163)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2163)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2163
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227179"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(130..1887)
                     /locus_tag="VIJ87_18340"
     CDS             complement(130..1887)
                     /locus_tag="VIJ87_18340"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEY5446387.1"
                     /translation="MSTSAKAFYEFGPFRIDMERYLLLRAGEPISLSPKVFETLLFLV
                     QNRGRIGKKDEIISNVWPDTFVEESNLAQNVFLLRKALGEEKNEHRYIVTIPGVGYRF
                     VAAVREFDTPNVQTQSEPSSIISSIAVLPFKDLLGDDDEKFLGPGLADALIMRLSSIR
                     ELRVRPTAAVLRYTNLKEDPLQIGRDLNVDALLDGVYQREPDKIRVSVQLVSVKDGVT
                     LWAAKFDEKLTDIFAIQDSIADQVVRSLAIQLSGDEQRQIKKNYTHNPEAFQLFIKGR
                     YFWNQRTIDGLRKALDYAQQAIAVDPTYAPAYVGLADSYNLLGAQHNVLPPKESFPKA
                     RAAARRALEIDPLLAEAYASLGFINCGFEWDWPGAEQCYLKAIELKPNYPTAHHWYGE
                     WLTTTGRFEQAYVELQTAQELDPLSLAINVDLAASFYYSRQFDNSERQLLNLLELNSK
                     FVRALVVLGKVYVQKREFDKGIEVLQKAVEYSGDDPATKSTLAHALACAGKSQEARTL
                     LDDLLKASAHRYISACRVAEIHTGMGDTEAAYAWLDQALETRDIELIWLKVNPAFDRL
                     RAETRFIELMCAVNPGLVG"
BASE COUNT          506 a          565 c          563 g          529 t
ORIGIN      
        1 tgcaattaaa gacaccagga ttaacaaggg tacctcaggc gggggcacgc tccgggctaa
       61 aactttcaac gcgtccagtt ttccgctgcc cccttcccag cttgttcgac ccactgtggc
      121 gtccaagtct cagcccacca gccctggatt caccgcacac atcagttcga tgaatcgagt
      181 ctcagctcgc agccgatcaa acgctgggtt cactttcagc cagatgagtt caatgtctct
      241 ggtttcaagt gcctggtcca gccacgcgta tgcggcttct gtatcgccca ttccagtgtg
      301 gatctcagct acccgacatg cggagatgta ccgatgcgca cttgccttta gtaaatcgtc
      361 taataaagtc cgagcttctt gagattttcc tgcgcaggcc aaggcgtgtg ccagtgtcga
      421 tttggttgct ggatcgtcgc ccgaatactc gactgccttc tgcaacactt caatgccctt
      481 atcgaactcg cgcttctgca catacacctt gccgagaact accagcgccc gcacaaattt
      541 tgaattcaat tccaacaggt tgagaagctg gcgttcacta ttatcgaact gccgcgagta
      601 atagaacgac gcagcgagat cgacattgat cgccagtgac aaaggatcga gctcttgcgc
      661 cgtctgcaac tcaacgtagg cttgctcgaa cctgcccgtg gttgtgagcc attcgccgta
      721 ccagtggtga gccgtcgggt aattaggttt tagttcgatg gccttcaggt aacattgttc
      781 cgcaccgggc cagtcccact caaaaccgca attgatgaat cccagggagg cataagcttc
      841 cgcaagcaac ggatcgattt cgagtgccct tcttgcagct gcgcgcgctt ttgggaatga
      901 ttctttcggg ggtaagacgt tgtgttgcgc gccaagaaga ttgtacgaat ccgccagccc
      961 aacgtaagca ggagcgtagg ttggatcgac ggcgatggct tgttgtgcgt agtcgagcgc
     1021 ctttcgcaaa ccatcgatgg ttcgttgatt ccagaagtaa cgccccttga tgaagagttg
     1081 aaatgcttct gggttgtgcg tgtagttctt cttgatttgc cgttgttcgt cgccgctcaa
     1141 ctggatagcc agggaacgaa caacctggtc cgcaatagag tcctggatcg caaagatgtc
     1201 ggtgagcttc tcgtcaaact tcgcggccca cagggtcaca ccgtctttga cgctcaccaa
     1261 ctgaactgac actcggattt tgtctggttc gcgttgatag acaccatcca gcaaggcgtc
     1321 gacatttaag tcgcgcccga tctgtaaggg gtcttctttg agattggtgt agcgaagcac
     1381 tgcggcagtg ggtcgaaccc gcaactctct gatgctactc aatcgcatga tcagggcgtc
     1441 cgcaaggccc ggtcccaaaa acttctcatc atcgtcgccc agcaagtctt tgaaaggaag
     1501 tacagctatt gagctgatga tgctactcgg ctcgctttgt gtttgtacgt tcggagtatc
     1561 gaattctcta acggcagcaa caaagcgata accaacgccg gggatagtga cgatgtaacg
     1621 atgttcgttc ttttcttcac ccagggcttt ccgcagcagg aagacgtttt gtgcgagatt
     1681 actttcttcg acaaacgtat ccggccaaac gttgctgatg atttcgtctt tcttgccaat
     1741 acggccgcgg ttttgaacca ggaacagaag cgtctcaaag acctttggtg agagcgaaat
     1801 cggctcgccg gcgcgcaaca acaaatacct ttccatatca atccggaaag gaccgaattc
     1861 ataaaacgct ttggctgaag tgctcattat tctgagaact tatgagaagt ctttgaagac
     1921 ttgtgatgcc ggctgttcat aatctcggag acaaggaaga aacgaattgt cgtctaatta
     1981 ggttgcgagc attataaaca aaacggaatg cacactgctg agctaaggac gcctcaatgg
     2041 gttgaacaag ctgggaacgg agcagcggga gttgtggacg cctcagtgtg tcggacaagc
     2101 tgggaagggg gcaagtggaa atcaggacgc cttacttgat tgacaccaag cgcgcccctg
     2161 ctg
//
LOCUS       DATCGC010001928         1096 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_493041, whole genome shotgun sequence.
ACCESSION   DATCGC010001928 DATCGC010000000
VERSION     DATCGC010001928.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1096)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1096)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1096
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_493041"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(100..>1096)
                     /locus_tag="VIJ87_18345"
     CDS             complement(100..>1096)
                     /locus_tag="VIJ87_18345"
                     /inference="COORDINATES: protein motif:HMM:NF045061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446388.1"
                     /translation="GTISCAMCHTRVLSDGTVVKGAQGNLPFEGAAALTVNNVTVERL
                     LGFERSFFGTPWVKPDPLDKIQKISLEKLAEMHAAIPPGVIARHGTNPLFPPQIPDLI
                     GIKDRRYLDHTGLQLHRSIVDLMRYAALNQGADNLASYGGFIPDTKDFRTLPDPEKRL
                     RNSDEQLYALALYIYSLKPPPNPNRYDRLASRGKKVFEWEGCAACHTPPLYTNNTLVA
                     VDGFEVPEDHRRRYDILWASIGTDPRLALQTRRGTGYYKVPSLKGVWYRSPFEHNGSV
                     ATLEDWFDARRLRDDYIPTGFRGTGVKSRAIKGHPFGLDLSAADREALIAFLKTL"
BASE COUNT          266 a          291 c          281 g          258 t
ORIGIN      
        1 ccaacctaca acttggtacg caagtgcgca gaatacaccg agagttgaat aacggattaa
       61 gatactctgc acgaaggtct acaagatacg cgccaattct cacaacgtct tgagaaacgc
      121 gatcagcgct tcccgatcag ccgcagacag atcaaggcca aaaggatgtc ctttgatagc
      181 gcgagatttc acaccggttc ctctaaagcc tgtaggtatg tagtcatcgc gcagacgccg
      241 cgcgtcaaac caatcttcca gagttgctac cgaaccattg tgctcaaatg ggcttcgata
      301 ccacacaccc ttgagtgacg gcactttgta gtagccagta ccacgtcgcg tctgcagagc
      361 gagccgcgga tcggtaccta tcgatgccca aagaatgtca tacctccgcc ggtgatcttc
      421 aggtacttcg aatccgtcga cagctacgag cgtgttgttg gtgtagagcg gtggtgtgtg
      481 acaggcagca catccttccc actcgaaaac cttcttgccg cgtgacgcta atcggtcgta
      541 cctattcgga ttcggtggcg gcttcagtga atagatgtac agcgcaagcg catacagttg
      601 ctcatcgctg ttgcggagtc tcttttctgg atcgggcaaa gtgcgaaaat ccttcgtgtc
      661 aggaataaat ccgccatagc tcgcgagatt gtctgcaccc tgattcaagg cagcgtagcg
      721 catcaggtcg acaatcgagc ggtgaagttg aaggcctgta tgatcaagat atcttcgatc
      781 cttgatcccg atcaaatctg gtatctgtgg cgggaacaac ggattcgtac catgtcgcgc
      841 aataactccc ggtggtattg ccgcatgcat ttcggcaagt ttttccagag atatcttttg
      901 gatcttatct aacggatctg gcttgaccca gggcgtgccg aagaatgaac gctcgaaacc
      961 aagtaaccgt tcgaccgtga cgttgtttac ggtcaaagcg gcggcaccct cgaaagggag
     1021 atttccctga gcgcccttga cgacagttcc gtctgacaat actcgcgtgt gacacatcgc
     1081 gcatgagatt gttccg
//
LOCUS       DATCGC010001929         1028 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_425117, whole genome shotgun sequence.
ACCESSION   DATCGC010001929 DATCGC010000000
VERSION     DATCGC010001929.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1028)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1028)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1028
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_425117"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1028
                     /locus_tag="VIJ87_18350"
     CDS             <1..1028
                     /locus_tag="VIJ87_18350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446389.1"
                     /translation="IITRVQATSALILIFGCSLVLGFGANAIVASGHALVAEVADTWR
                     NSALNLLDICFGLGLASLPLVVQALQRQGGLELIFWSLGALTVVLLLLILTSRFPAPT
                     QAHSSGAGDAGSLFSNPSFLLLALALFMYVGAEVSVGKWVVTFMERDASILASQGVSA
                     AHLEAMSRMSPDVLNKFFEADPTGVGIAGYALGTLSLFAMALLVGRLVSSLLLGVLRV
                     NSFLLMTAGSLLTTVSLLIAFTASSSGTVRLGLIAAGFGMGPIFPTSVGLASVMNPRI
                     AGTAMSWVMGVGFAGLLVIPPAVGYVSSAVGGSVGNVRTGLFAVIAASVLMLLLHVLL
                     MLRERNN"
BASE COUNT          179 a          259 c          297 g          293 t
ORIGIN      
        1 tgataataac gagagtgcaa gctacctccg cgctgatttt gatcttcggc tgttctctcg
       61 tgctgggttt tggcgccaac gcgatcgttg cttcaggaca tgctctcgtc gccgaagtcg
      121 ccgacacctg gcgaaactca gcattgaatc ttctggacat ctgttttggt cttggtctcg
      181 cttcccttcc actcgtagtg caagcactac aacgtcaagg aggtctcgaa ctgatcttct
      241 ggtcgctggg tgcgttaacc gtcgttctgc tgctgttgat tctgacttcg cgcttccctg
      301 caccaacaca ggcacactca tctggagcgg gtgacgcggg ctcacttttt agcaatccct
      361 ccttcttgtt gctggcactg gcactgttca tgtacgtcgg cgctgaggtg tcggtcggca
      421 aatgggtcgt cacctttatg gagcgcgacg cgagcatact tgcgagccag ggtgttagtg
      481 ctgctcacct ggaagcaatg agccggatgt ctccagacgt tctcaacaag ttctttgagg
      541 ctgatccaac gggcgtcggg attgctggct atgcgttagg tacgctctca ctattcgcga
      601 tggcgttgtt agttgggcga ctcgtgtcga gtcttctttt gggagtgttg cgtgtcaaca
      661 gtttcttgtt aatgacggca ggctcactgc tcacaacggt gtcgctacta atagcgttta
      721 ctgcgagctc atctggaacc gtaagactcg gtctcatcgc cgcaggattt ggcatggggc
      781 ccatctttcc tacttcagtg ggcctggcgt cagtaatgaa tccgcggatt gcaggcacgg
      841 caatgagttg ggttatgggc gtgggcttcg cgggcctact ggttattcca cccgccgttg
      901 gttatgtctc tagcgctgtg ggtggatctg tggggaatgt acgaacagga ttattcgccg
      961 tgatcgcagc gtccgtgctg atgttgttgt tgcatgtgtt gttgatgctt cgagaacgaa
     1021 acaattag
//
LOCUS       DATCGC010001930         1115 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_460819, whole genome shotgun sequence.
ACCESSION   DATCGC010001930 DATCGC010000000
VERSION     DATCGC010001930.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1115
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_460819"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1010)
                     /gene="asd"
                     /locus_tag="VIJ87_18355"
     CDS             complement(<1..1010)
                     /gene="asd"
                     /locus_tag="VIJ87_18355"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: protein motif:HMM:NF006416.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEY5446390.1"
                     /translation="MSKHRVGILGATGMVGQRFIQLLEDHPQFEVTAVAASDRSQGKP
                     FGEACTWRLGGEMPVAIRSLKVQPPAPPLDCDLVFSSLPGDIARETESAFAEAGYPVI
                     SNSSAFRMDPDVPLLIPEVNHEHLGLLDQQRESHPKGGFIVTNPNCSTIGLVLALAPL
                     QNAFGVEAAIATTLQAISGAGYPGVASLDILDNVLPFIGGEEEKIETETTKILGSFAD
                     GQIKIAPMKVSAQCHRVNVADGHMVAARVKLKQRATIEDVRNALASYRSLPQELGLHS
                     APKNPIVVRNEQDRPQPKYDRDAGAGMSVTIGRLLPDAVLDYRFVSLSHNTIRGAAGA
                     AIL"
BASE COUNT          275 a          303 c          278 g          259 t
ORIGIN      
        1 aggatagccg cacctgcagc accgcgaatt gtgttgtgac tgagagaaac aaaacgatag
       61 tcgagcacgg catcagggag caaccgcccg atagtaactg acatgcctgc gccggcatcg
      121 cgatcgtact tcggttgcgg acgatcctgt tcgttacgaa cgacgattgg atttttcggt
      181 gccgagtgca aaccaagctc ttgtggcaag gaacgatatg aagccaacgc attacgaaca
      241 tcttcgatcg tcgcccgttg tttgagtttc actcgtgcgg caaccatgtg accatcggca
      301 acgtttacac gatgacattg ggcactaact ttcatcggcg cgatcttgat ctggccatca
      361 gcaaaactgc caaggatctt tgtggtctcg gtctcgatct tctcctcctc gccaccgata
      421 aacggaagta cgttgtcgag aatgtcgagt gaggccacgc caggatatcc agcgccagaa
      481 atagcttgaa gcgtggtcgc gattgccgct tcgactccaa aagcgttttg tagaggagca
      541 agcgcgagga ccagtccgat cgtagaacaa tttggattcg taacgatgaa cccgcccttt
      601 ggatgactct cgcgctgttg gtccaataat cccaagtgtt cgtgattgac ctcgggtata
      661 agcaagggga catccgggtc cattctgaaa gctgacgaat tgctaattac tggataaccc
      721 gcttcggcaa aagcactttc ggtttcgcga gcgatgtcgc caggtaaact cgagaacaca
      781 agatcacaat caagcggcgg tgcgggtggc tgaaccttca gcgaacgaat tgcgacaggc
      841 atttcacccc ccagtcgcca cgtgcaagct tcaccgaacg gctttccttg cgaacgatct
      901 gatgcagcga cagccgtcac ttcaaattgc ggatgatcct ccagcagttg gataaaccgc
      961 tgcccaacca ttcccgttgc tccaagaatt ccaactctat gtttagacat gtctctcttt
     1021 ctgtccacct tatctgtgta acaaacccat agcaagattt tctatctcgc gaccaacccg
     1081 aggctagaga tccagtggcg ttgtagtcag tacca
//
LOCUS       DATCGC010001931         1625 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_127644, whole genome shotgun sequence.
ACCESSION   DATCGC010001931 DATCGC010000000
VERSION     DATCGC010001931.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1625)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1625)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1625
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127644"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            482..1348
                     /locus_tag="VIJ87_18360"
     CDS             482..1348
                     /locus_tag="VIJ87_18360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446391.1"
                     /translation="MATKTTNQSFLGGDQSPEKIRSEFIDKPLEAAKQAVLGSGLELF
                     NLMSALPDAFIASQSRELERVKASGKDNDDRVALLEASIAQATVLRTTVQLGETRVGR
                     ALSSVGDSEIAFHGFVSNTEFEPVGGLTVRLSGREGEGGKRGLTATTDNDGYFRIPLG
                     SKSDSGKEWRTRVGQINFAEKINILSEQQAAAADASSTSDTSGATKARAQVEILDGNK
                     SVYQDPVGVPIDEGSVYREYVVAVAKGTAAANSGVVESAGTKQEEIDVSQAPSKKRAT
                     KKATTTKRSTKK"
     gene            complement(1421..>1625)
                     /locus_tag="VIJ87_18365"
     CDS             complement(1421..>1625)
                     /locus_tag="VIJ87_18365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446392.1"
                     /translation="CYTVRYDFGYSEEFRPQIYANQRAREAGDGIKPGAQAPGKSSLN
                     RTSPRSGRQLKRLTAAVARFAGS"
BASE COUNT          419 a          392 c          456 g          358 t
ORIGIN      
        1 tcgacgccga aggttcattg gcgttcggat tcattttgca cgggtaaacc gttgaaacgg
       61 ttcctgagta actggggcgc accttaaccc caagctaaag cttggggaga atgagaccaa
      121 ctcccgctaa tgatctgatt accacttcag acctttgcaa gttgctctga agcataaaag
      181 aggtcgtgca aaactctcat tctccccaag cttcagcttg gggttacagt agtgcctagt
      241 tttggggaac cgttttaacg gtttacgagt ttgagccaat caagctcgac gccgaaggtt
      301 cattggcatt cgaattcatt ttgcacaggt aaaccgttga aacggttcct gagtaactgg
      361 agcgcacctt aaccccaagc taaagcttgg ggaaaatgag agcaactcgc gctaatgatc
      421 tgattaccac ttcagacttt tgcaagttgc tctaaagcat atcggacatt ggagtttcat
      481 tatggcgacc aaaactacga atcagagttt cctcggcggc gatcaatcac cggagaagat
      541 ccgcagcgag tttattgata agccattgga ggctgccaaa caggcggtgc tcggatcagg
      601 tttggaactt ttcaatctga tgagtgcact cccggatgcc tttattgcgt cacaaagtcg
      661 ggagttggaa cgggttaagg catcgggcaa agataacgac gaccgcgtgg ccttacttga
      721 agcgtcaatt gcgcaagcca ctgtgcttcg cacaaccgtt caactcggtg agacgcgcgt
      781 cggtcgagcg ttgagttcag tcggcgacag cgaaatcgct tttcatggct ttgtgtcaaa
      841 tactgaattc gagccagtcg gcggattgac ggtgcgactg agtggacgcg aaggtgaagg
      901 tggaaagaga ggattgacgg cgacgaccga caacgacggt tacttccgga ttccgctcgg
      961 ttcaaagagc gattcgggaa aagagtggcg caccagggtg ggccagatca atttcgccga
     1021 aaaaataaac atcttgtctg agcaacaagc ggcggccgca gatgcgagct ctactagcga
     1081 tacgtctggt gcaacaaaag cgcgcgctca ggttgaaatc ctggatggca ataagagcgt
     1141 ttaccaggat ccggtgggag tgccaatcga tgaaggcagc gtctatcgcg agtatgtggt
     1201 tgcagtagca aagggaacag cagcagcgaa ttctggtgtt gtcgaatcag ctggaactaa
     1261 gcaggaagag atcgatgtct cgcaagctcc gtcgaagaag agagcgacga agaaggccac
     1321 gaccaccaag cgctcaacga agaaataatt tctgagcctg cgaagcaggc gttagcgtaa
     1381 agcctggggg cgtcagcccc agggtacgcg acgaaataat ttacgagccc gcgaagcggg
     1441 cgacagcagc agttaatcgt ttgagctgtc gcccgcttcg cgggctcgtc ctattcaatg
     1501 acgacttacc tggggcttgc gccccaggct ttatgccgtc gcccgcttcg cgggctctct
     1561 gattcgcgta aatctgcggc cgaaattcct ctgaataacc aaagtcgtat cgaaccgtat
     1621 agcaa
//
LOCUS       DATCGC010001932         1102 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_294778, whole genome shotgun sequence.
ACCESSION   DATCGC010001932 DATCGC010000000
VERSION     DATCGC010001932.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1102)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1102)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1102
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_294778"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            14..>1102
                     /locus_tag="VIJ87_18370"
     CDS             14..>1102
                     /locus_tag="VIJ87_18370"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY5446393.1"
                     /translation="MSFTSQWAAARSAHVLGVVGRLKPGVTIEQATTEMNTIGARLEQ
                     EYPANKGEGIIVNRFMNEVVGDVRPALVTLMVAVGLVLLIACANIAGLLLAQHAARSK
                     EIAIRAALGANRFRLVHQFFLEGLLLSLIGAAAGMGLANLGVNLLLKFIPQDIPRLGL
                     IQIDWRVLGFTLGISLLTCLLFGLIPAWQASKPDLHSTLEQSGRTSGPGASKLRLRQF
                     LVVFQVGMAVMLVIGAGLLIKSFWLLSRVDPGFQPQHVLSMTLTLPATKYAKPEEINQ
                     FFNQLNAGINNLPGVQSVGLAYDHPLQANWVDAFEIEGRIASTETRSMSANFNPVGTD
                     YFKTVGMKLLKGRGFTAQDDQDHPGVAVV"
BASE COUNT          251 a          282 c          288 g          281 t
ORIGIN      
        1 gtactggcgg cccatgtcgt ttacgtctca atgggctgcc gccagatccg ctcatgtgct
       61 gggtgttgtt gggcgcctaa aacctggcgt gacgatagaa caagctacga cggaaatgaa
      121 caccattggt gcccgtcttg agcaggaata tccagcgaac aagggcgagg ggattatcgt
      181 gaaccgcttc atgaacgagg ttgtcggcga tgtaagacct gcgctcgtga ccctcatggt
      241 tgcagttgga ctggtccttt tgatcgcctg tgcaaacata gccggtctat tgctcgctca
      301 acacgcagct cgcagcaaag aaattgccat tcgcgctgct ctcggagcaa atcgcttcag
      361 actcgttcac caattctttt tagaaggctt gttgctctcg ctaattggcg ccgccgcagg
      421 tatgggattg gcaaaccttg gggtgaactt attattgaaa ttcattccac aggacatacc
      481 gcgactcggt ctgatccaga tcgattggcg agtgctcgga ttcacgcttg ggatctcgtt
      541 gcttacttgt ttgctgtttg gcttgattcc cgcgtggcaa gcttcaaaac ccgatttgca
      601 ttcgacgctt gaacagagcg gccgaacctc tggtcctggc gcgagtaagc tacgactcag
      661 gcagtttctc gtggtctttc aagtgggcat ggccgtgatg ttagtgatcg gagcaggact
      721 cttgatcaag agtttctggc tactcagtcg agttgatccc ggcttccaac cgcaacatgt
      781 cttatcaatg actctcactt taccggcaac taaatacgca aagccggaag agatcaacca
      841 attctttaac caactaaacg caggaatcaa caacttgccg ggtgttcaat ccgtcggtct
      901 tgcttacgat catccgttac aagcgaactg ggtcgatgct ttcgagatcg aaggacgcat
      961 tgcctcaacc gagacacgtt cgatgtcagc caatttcaat cccgttggaa cggattactt
     1021 caaaacagtt gggatgaagt tgctcaaggg ccggggcttt acagctcaag acgatcaaga
     1081 tcatccgggc gttgccgttg tc
//
LOCUS       DATCGC010001933         1398 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_30434, whole genome shotgun sequence.
ACCESSION   DATCGC010001933 DATCGC010000000
VERSION     DATCGC010001933.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1398)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1398)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1398
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30434"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..207)
                     /locus_tag="VIJ87_18375"
     CDS             complement(<1..207)
                     /locus_tag="VIJ87_18375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446394.1"
                     /translation="MLEKLGRIRLLYIVLGVLLLVGLLPLAFAGVLLSGRSADKLRSI
                     ESRYQAQLVQDKARQIELYGQRYRD"
     gene            474..1052
                     /locus_tag="VIJ87_18380"
     CDS             474..1052
                     /locus_tag="VIJ87_18380"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY5446395.1"
                     /translation="MDTVTTDEIIVERALTGDGEAFGELVRRWERRIFALAYGMLGRE
                     EEARDATQETFLAAFRNLRGFRGEAKVSSWLHRIAVNQCITRQRRAKVRSESALDDEQ
                     EKDAANFAAALSLSPARVTEAAQVTVAVRRAVNSLPVELRQIVVMKEFEELTFREISE
                     ALDLPLSTVKSRLYTALKQLQMKLNRFGSEAA"
     gene            1067..>1398
                     /locus_tag="VIJ87_18385"
     CDS             1067..>1398
                     /locus_tag="VIJ87_18385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446396.1"
                     /translation="MSEKIQRPSCERAEDLMSFLYGESNDVEARDFEGHLKLCRVCAE
                     ELASFGHIRESIGIWKEDALNNFVQPQVVAPVRQKSALVALREFFNLSPLWMKGAVGF
                     AAVIFCALV"
BASE COUNT          332 a          329 c          416 g          321 t
ORIGIN      
        1 gtcccgatac cgctggccgt aaagctcgat ttggcgcgcc ttatcctgca ctaactgggc
       61 ctgatatcta ctttcgatcg agcgcaactt gtcagcactt cggcccgaaa gcaggacgcc
      121 agcgaaggcg agcggcaata agcccactaa gagtaggact cccaaaacga tgtaaaggag
      181 acggattcgt ccgagttttt cgagcattct cagggtttgg cggttacaat ttccggcagg
      241 ttgaacgcgg aagggtcagt gatttagggt cccatcgacc ttgaatccca ttattgtcga
      301 cccttcatcg ctgtgtcaac gagttttgac atgcttttac tctgatgttt ccgctcgaag
      361 tagcttttca tcgacttccg gcaaggagcg agcgtctaaa tggctgagcg ccaacgctgg
      421 atcggtgctc taacagtcga gaaagagctg gacgcagccc atttgaccga caaatggata
      481 ccgttaccac cgacgagata atcgtagagc gcgctttgac aggcgatggg gaagctttcg
      541 gcgagctagt gcgtcgctgg gagcgtcgga tattcgcgct tgcctacggg atgcttggcc
      601 gcgaagaaga agctcgcgat gctacccagg agacgttcct ggccgcgttc cgaaacctcc
      661 gcggtttcag aggcgaagca aaagtctcgt cgtggttgca ccgtattgcg gtgaatcagt
      721 gcatcacgag acaacggaga gccaaggttc gaagcgagtc ggcattggat gacgagcagg
      781 agaaggatgc ggcaaacttt gcggcggcat taagtttgtc gccggcgaga gtgacggagg
      841 ccgcacaggt gacagtggcc gtacgtcgcg ccgttaatag tctcccggtt gagttgcgac
      901 agatcgtagt catgaaagag tttgaggaac tgacatttcg agagatttct gaggctttag
      961 atttgccgct gagcacggtc aagagccggc tgtacacagc gttgaagcaa ttacaaatga
     1021 aactgaatcg atttggcagt gaagcagcgt gaaagtagga acgaagatga gcgagaagat
     1081 acaaaggcca agttgtgaac gcgcagagga cttaatgtcg tttctctacg gcgaatccaa
     1141 tgacgttgaa gcacgtgatt tcgagggaca cttgaagctt tgtcgtgtat gcgcggaaga
     1201 gttggcttcc tttggtcaca ttcgcgaatc gattggaatc tggaaggaag acgcactgaa
     1261 taacttcgta cagccgcaag ttgtcgctcc tgtgcgacag aaaagtgcgc ttgtggccct
     1321 gcgtgagttc ttcaatctgt cgccactctg gatgaaaggc gccgttggtt tcgcagccgt
     1381 aattttctgt gcgctggt
//
LOCUS       DATCGC010001934         1401 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_61287, whole genome shotgun sequence.
ACCESSION   DATCGC010001934 DATCGC010000000
VERSION     DATCGC010001934.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1401)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1401)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1401
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61287"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..188
                     /locus_tag="VIJ87_18390"
     CDS             <1..188
                     /locus_tag="VIJ87_18390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446397.1"
                     /translation="FKNIFDLSLIFLSWSFGRVSSAQATRYFIVGTDYSAIGVLLNDQ
                     LKKVKWKIISFRPSVFI"
     gene            complement(222..1112)
                     /locus_tag="VIJ87_18395"
     CDS             complement(222..1112)
                     /locus_tag="VIJ87_18395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446398.1"
                     /translation="MVLIVVCLSSMVFVPSGFTQKQKEEKTGSHSTRGIGGMSPGTRA
                     LVEEATGVVCTEAKLDPRSSLAIDEMQARPSLPVQTPEARAGAARAQRLLPLAKNLVV
                     SSLKQLVIDYKFQNARGLNARIQQGIERVQGVRNVRPDMDSRDNASVFLSRPHTITFG
                     TIFLAGLRSDEGMISVLSHELMHIADGDRDSLRVLVSAVGFRASGLIGMDIRGQRSEE
                     LTCDLIGAMAVRAYVSDTPDYESISRRLSRSIEHNCVDLDEGDEDHLSPRNTIRALLA
                     LSPVLVRELINDREERPVRP"
BASE COUNT          336 a          359 c          341 g          365 t
ORIGIN      
        1 attttaagaa cattttcgat ttatcattga tatttctcag ttggtcattt ggtcgcgtga
       61 gtagcgctca agccactcgc tacttcatcg tgggtactga ctactcggct atcggagttc
      121 ttctcaatga ccaactgaaa aaagtcaaat ggaaaattat ttcttttcgc ccgtcagtct
      181 ttatctgatt aagcctcaca gactgaagtc tgtgccacac gctatggcct gaccggtcgt
      241 tcctcacgat cgttgatgag ttcccgaacg aggacgggac tgagagcgag cagggcgcga
      301 atcgtatttc gcggcgatag atgatcttca tcaccctcat cgaggtcgac gcaattgtgt
      361 tcaatcgaac gcgataatct ccgggaaatt gattcgtaat ccggcgtgtc tgaaacgtaa
      421 gcgcgaactg ccatagcgcc gatcaagtcg catgtcagtt cttcgctacg ttgcccgcga
      481 atatccattc caataaggcc ggaagctcta aatccaactg ccgagaccag gacgcgcaaa
      541 ctgtctcggt caccgtcagc aatatgcatc agttcatgag acaacacact gatcatccct
      601 tcgtcggaac gcagaccagc gagaaatatc gttccgaacg tgattgtgtg cggccgactt
      661 aaaaataccg acgcgttgtc gcgcgaatcc atatcgggtc tgacgtttct cacaccctgg
      721 actcgttcta tgccttgctg aattcttgcg ttcagtccgc gcgcattttg gaatttgtaa
      781 tcaataacga gctgcttcag cgaactgaca accagatttt tagccaacgg caatagtcgt
      841 tgagcacgag cagctcctgc gcgggcctcg ggagtttgaa caggaagcga tggtcgggcc
      901 tgcatctcgt cgattgccag actgctgcgc ggatccaatt tcgcttctgt acaaactacg
      961 ccagtcgctt cttcgactaa tgcgcgggtc ccaggcgaca taccgccgat tccgcgagtt
     1021 gagtgtgagc ctgtcttttc ttctttttgc ttttgagtaa atccggaggg aacaaaaacc
     1081 atcgatgaaa ggcaaaccac tatgaggacc attagagtca acaaacgtcg tgtttttggg
     1141 gatagcgtca tcagggttat tagtggccga gatcggtcat cgatttgcag ggggccttat
     1201 acgattcata gcgacaagac aggcgcatat cggacagttt tgatcctatc gatcgcgcca
     1261 agttgggcgt cgtttttcca tgaatgcctt gatgccctca tttgcatccg cggaacgcat
     1321 taactcatga aggtagatgt tctcaagttc agtcaatacc ttgtcgaacg taaatccgcg
     1381 accgatgtcc atcgcacgtc g
//
LOCUS       DATCGC010001935         1118 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_227327, whole genome shotgun sequence.
ACCESSION   DATCGC010001935 DATCGC010000000
VERSION     DATCGC010001935.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1118
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227327"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(163..>1118)
                     /locus_tag="VIJ87_18400"
     CDS             complement(163..>1118)
                     /locus_tag="VIJ87_18400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446399.1"
                     /translation="FPENYFVANPQWSTAPYSTNLGYSNYNSVEMQLTMRPIHGFSFM
                     ATYGLSKTMYQPGNGFTDPLSPTLDYSKNSTSVGSDFRANGALELPMGPNKLLFANSS
                     GWVARVIERWQLGFIYNISSGAPRSFLSGNNMLYANGRPNIVGPWNNPKGSVSWNGQN
                     GSFFEDTYTTYTDPQCANVTTADGLQANCSLKGLAVVTPSTTPGAVLLNAATNTYGVK
                     LLENPNPGQQGNLGATTLNTFAKWRLDGNLSKTFQVTETVSAQLRIDATNIFNHPTPG
                     SGNTTDPVGLTNNGSSFQDNFGQLTTKSGSRTFQAKLRITF"
BASE COUNT          218 a          304 c          321 g          275 t
ORIGIN      
        1 acctccccgc ttcgccctgg ctgaggtagc gtgacattct tcttcgaggg ctcagcgacc
       61 cctccttatg gagggcagat gtgtggcatc cttcagaatt catcgaccac ccggcccttc
      121 ctctacccag caaatttgcg aacgaacttc taactcagga gcctagaagg ttattcgcag
      181 cttggcctgg aacgtgcggc tcccggactt cgtcgtgagt tgaccgaagt tatcctggaa
      241 gctgctgccg ttgttggtca atcccacggg gtccgtggta ttgcctgagc ccggcgtcgg
      301 atgattgaag atgttcgtcg catcaatccg aagctgagca gaaacggtct ccgtcacctg
      361 gaacgtcttc gagaggtttc catccaggcg ccacttggcg aatgtgttca gcgtggtcgc
      421 gcccaggttt ccctgctgtc ctggattcgg gttttccagc aatttgactc cataggtgtt
      481 cgtcgctgca ttgagcagga ctgcgcccgg cgttgttgac ggagtgacta ccgccaaccc
      541 tttcaatgag cagttcgcct ggaggccgtc cgctgttgtc acatttgcgc actgagggtc
      601 tgtgtaggtt gtatacgtat cctcgaagaa gcttccattt tgaccgttcc acgacacgct
      661 tccctttgga ttgttccagg gcccaacgat gttgggacgg ccattcgcat acagcatgtt
      721 gtttcctgaa aggaacgacc gcggggcccc tgaggaaatg ttgtagatga agcccaactg
      781 ccagcgttcg atgacgcgag caacccaacc cgaactgttg gcgaagagca gcttgttggg
      841 acccatgggc agttcgaggg ctccattggc acggaaatca ctgccaacgc tggttgagtt
      901 cttgctgtag tcgagtgtcg gactcaacgg atcggtgaag ccgttaccgg gttgatacat
      961 ggttttgctc aagccatagg tggccataaa gctgaagcca tggatcggcc gcatcgtcaa
     1021 ctgcatctca acggagttgt agttgctgta acccaggttc gtggagtagg gagccgtact
     1081 ccactgtggg ttcgctacga agtagttctc cgggaagc
//
LOCUS       DATCGC010001936         1319 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_227359, whole genome shotgun sequence.
ACCESSION   DATCGC010001936 DATCGC010000000
VERSION     DATCGC010001936.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1319)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1319)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1319
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227359"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(162..1079)
                     /locus_tag="VIJ87_18405"
     CDS             complement(162..1079)
                     /locus_tag="VIJ87_18405"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY5446400.1"
                     /translation="MSVSCIACDSQDTVSIGPLPIYTTDNLGQPTNDRSDAGSLYRCL
                     NCALRFRFPQPTDEQLLAYYSGLSETDWWQHGTSREVWRHIRTELEDLPQKSVLDVGC
                     FRGDLLTYLGDGFERFGVEPSPSAREEARSRNITLLGETIDSLRDEPRRFGAITMIDV
                     IEHLPKPVDSLRVLSRLLLPGGKLIIFTGDTEALSWRIANLHYWYSALPEHVAFFRLS
                     WFRWVAQMLDCKVTSHKRLAYQPASIKVRLDESLKNLAFVTYHRLGTMSAANNLLSRV
                     PLLRRIGQWPSCWWTSARDHLLVTLTKEC"
BASE COUNT          337 a          345 c          342 g          295 t
ORIGIN      
        1 gatcttcagc tgattatcgc cgagatagtg gaggccacta aggaaagggt gaagcacgcc
       61 gcaataccgc tctaattcgc gtcagctttg ttgtcctggg atttgcaaag aggtgcctaa
      121 gctcggaacc ttccgtttaa ccctggtccg gttgtgaatc ttcaacattc tttcgtaagc
      181 gtaaccagca agtggtctcg cgccgaggtc caccaacagc tcggccattg accgatgcgc
      241 cgcaacagcg gaacccgaga aagcagatta ttggcagcgg acattgtccc caggcgatgg
      301 taagttacga aggccaaatt cttgagagat tcgtcaagcc tcaccttgat ggatgctggt
      361 tgataagcca gtcgtttatg agaggtgacc ttgcagtcca acatctgtgc gacccagcga
      421 aaccatgaga ggcgaaaaaa cgcaacgtgc tccggtaatg cactgtacca atagtgcaga
      481 tttgcgatgc gccatgacag cgcttctgtg tcgccagtaa aaatgatcaa tttcccaccg
      541 ggtagcaaca ggcgactcag cacgcgcagg gaatccaccg gcttcggcag gtgctcaatc
      601 acatcgatca ttgtgatagc tccaaatcta cgaggctcat cgcgtagtga gtcgatggtt
      661 tcgcccaata gagttatgtt ccgcgatcga gcttcttccc tggcactagg ggatggttct
      721 acgccgaacc gttcgaaacc atcacccaaa tacgtgagca ggtccccacg aaagcaaccc
      781 acgtcgagca cggacttctg aggtaagtct tccagttccg ttctaatatg acgccacact
      841 tcccgtgatg tgccgtgctg ccaccagtca gtctcactta gaccagaata gtaggcgagc
      901 aactgttcat ctgtcggctg tgggaatcgg aaacgaagcg cacagttgag gcatcgatac
      961 aacgaacccg catcagaacg atcattcgtt ggctgaccca aattatccgt ggtgtatatc
     1021 ggaagaggtc cgatgctgac agtgtcctga ctgtcgcaag cgatgcaaga aacgctcata
     1081 acatctctag aacagagtcc tcggttgcag atcaggggtt tctgagtgat tgagaaatcg
     1141 cgccttcagc ttgcggagcc aaaacggata acgcgaacga caagatggca tggggggata
     1201 cggatagtga acaccggagc gatgttcacg atctcgcgta ttcattttta cctctgcaaa
     1261 gcaggtcaaa tagcgttcta ccattctggc acacgagaac ttctgactcg tttgccacg
//
LOCUS       DATCGC010001937         3087 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_493132, whole genome shotgun sequence.
ACCESSION   DATCGC010001937 DATCGC010000000
VERSION     DATCGC010001937.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3087
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_493132"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..232)
                     /locus_tag="VIJ87_18410"
     CDS             complement(<1..232)
                     /locus_tag="VIJ87_18410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446401.1"
                     /translation="MGHLGAAFFWDWIKLLRTDTTKAWEWQQKRFWFSGFAISRAESL
                     RLSVRRLEKRGFASGGVAANKVAGITESRQSRV"
     gene            224..2614
                     /locus_tag="VIJ87_18415"
     CDS             224..2614
                     /locus_tag="VIJ87_18415"
                     /inference="COORDINATES: protein motif:HMM:NF013239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIM-barrel domain-containing protein"
                     /protein_id="HEY5446402.1"
                     /translation="MSHSVFARRAVLFSTILLCLLTCVNRINAQVLGDPVDVSSDFQK
                     MENVYFVGSNVKSFDPATGQGTLQWDRYLRSTTLSFNKIDVTLARGKATEFPGSEYDQ
                     DPALPFSISFVSPRTIRLRMSTRAVPMSDGNSLMLAGPVPTDNSWKVEQNDQTISYKS
                     AFGEVRIIKQPWHIEFYDKSGHLLTRTQNIGDPATYITPIPFSFVRRSSDLSRRMAAT
                     FQLQHDEKIFGCGESFTRLDKRGQHVVVSTRDGMGTQNEYMYKPIPFFLSSNGYGMFV
                     HTSAPVTFDFGKYYDAHNVIYSGDENLDLFIFLGEPKDILSEYTAITGRSPVPPLWSF
                     GFWMSRITYNSEEQVRNVAAQLRAHKVPTDVIHLDTGWFETDWRSDYKFSSSRFKDPA
                     KMLADLKQQGFHVSVWQYTYFTSKNEVWKEMVSKGYQVKNEGGQLPFEDATLDITNPE
                     AVKWYQNKLAGLLKMGVAAIKADFGEGAPLTGQYASGRTGWYEHNLYPLRYNKAVAEI
                     TKEITGDNVIWARSAWAGSQRYPLHWGGDAENTNSAMAGELRGGLSFGLSGFTYWSHD
                     VGGFVNRAPRDLYRRWLGWGVLTSHTRAHGAPPREPWEYDDALNTDFQRALGLKYSLM
                     PYIYAQAKDSSAHGYPMSRTLFFEYPNDPTAWTIDDEYMFGSSLLVAPLFEPGDMRKV
                     YLPAGNWIDYQSNKTYEGGKWHSITAGQIPVILLVKDHTVLPHLKVAQSTSEMDWNNV
                     ELRVFSSDNSPVSGSFTSPTTEVLGLNLENTGKGYALKSDPLAGKVKWQITRAGAN"
     gene            complement(2655..>3087)
                     /locus_tag="VIJ87_18420"
     CDS             complement(2655..>3087)
                     /locus_tag="VIJ87_18420"
                     /inference="COORDINATES: protein motif:HMM:NF015971.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosidase"
                     /protein_id="HEY5446403.1"
                     /translation="TIKEVKNGLGPAPIKTGKGWLHLAHGVRGTAAGLRYVLYLFLCD
                     LKEPWRMTHQPGGYFLAPEGDERVGDVSNVLFSCGWIVRDEEVFIYYGSSDTRIHVAT
                     STVEKLLDYVVNTPADGLRSHASVEQRIELIDKNLKLLGRK"
BASE COUNT          759 a          830 c          788 g          710 t
ORIGIN      
        1 gtacgcggct ttgccggctt tccgtgatgc ccgcgacttt atttgcggct acgccgcccg
       61 aggcgaagcc tctcttttct aagcgccgaa cggaaagcct gaggctttcc gcacgggaga
      121 tggcaaagcc agaaaaccaa aatcttttct gttgccattc ccaagccttt gttgtatctg
      181 tgcgcaaaag cttaatccag tcccaaaaga aggcggctcc taaatgtccc attcggtctt
      241 tgctcggcgc gcagtcctgt tctcaaccat tctcctttgc ctgctcactt gcgtgaaccg
      301 cataaacgcg caagtcctcg gcgatcccgt agacgtcagt tcggactttc aaaaaatgga
      361 aaacgtctac ttcgtcggta gcaacgtgaa gagttttgat ccggcgaccg gccagggaac
      421 ccttcaatgg gatcgttatc ttcgcagcac aacgctctca ttcaacaaga tcgacgttac
      481 cttggcacgc ggaaaggcga cagagtttcc gggttccgag tacgaccagg acccggcgct
      541 accgttttcg atctctttcg taagtccacg aacaattcgt ctgcgcatgt cgacacgtgc
      601 tgtaccaatg agtgacggaa actcgctaat gctcgccgga ccagtgccaa ccgataactc
      661 atggaaagtc gaacagaacg atcagacaat cagctataag agcgcgtttg gtgaagtacg
      721 catcatcaaa cagccctggc acatcgagtt ctacgataag tcgggccatc tgctcacgcg
      781 cactcagaac attggcgacc cggccactta catcactcca attccctttt cgttcgtccg
      841 ccgctcaagt gatttgagcc ggcgaatggc cgctaccttt caactccagc acgacgaaaa
      901 gatcttcggt tgtggcgagt cgttcacgcg actcgataaa cgcgggcaac atgtcgtcgt
      961 ctcaacgcgc gacgggatgg gtacgcagaa cgaatacatg tacaaaccga ttcccttctt
     1021 tctaagcagc aacggatacg gaatgtttgt gcacacgagc gcgcctgtca cttttgattt
     1081 tggtaaatac tacgacgcac acaatgtcat ctattctggc gacgagaatc tcgacctgtt
     1141 tatttttctc ggcgaaccaa aggacattct ttctgagtac accgccatca caggccgaag
     1201 tccggtacca ccgctctggt cgtttggttt ctggatgagc cgcatcactt acaactctga
     1261 agagcaagtt cgcaacgttg ccgcgcagct aagagcacac aaagttccga ccgacgtgat
     1321 tcacctcgat accggttggt tcgaaactga ctggaggagt gattacaagt tctcttcgtc
     1381 acgtttcaaa gatccagcca agatgcttgc cgacctgaaa caacaaggct ttcacgtcag
     1441 cgtctggcag tacacctact tcaccagcaa gaatgaggtt tggaaggaaa tggtgtcgaa
     1501 gggctaccag gtaaagaacg aaggcggtca actgccgttt gaagatgcaa cactcgacat
     1561 tacgaaccct gaagcagtta agtggtatca aaacaaattg gccggattgc tgaagatggg
     1621 cgttgctgcg atcaaagccg acttcggcga aggcgcaccg ttaaccggcc agtatgcgtc
     1681 cggacgaacc ggctggtatg aacacaatct ctatccactc cgatacaaca aagcggtcgc
     1741 tgaaatcacg aaggaaataa ccggtgataa cgtgatctgg gctcgcagcg cttgggccgg
     1801 tagtcaacgt tacccattgc actggggcgg cgacgcagag aatacaaact ctgcaatggc
     1861 tggtgaactc cgtggcggat tgtcatttgg cctgtcaggt tttacctatt ggagtcatga
     1921 cgttggtggt tttgtgaacc gtgcgccccg agatctatat cgacggtggt taggctgggg
     1981 cgtgctcact tcccacactc gcgcgcacgg agcgccaccg cgtgaaccgt gggagtatga
     2041 cgatgcactt aatacagatt tccaacgtgc tctgggtctg aagtactcat tgatgcctta
     2101 catctacgcg caagctaagg attcatctgc gcatggatat ccaatgtcgc gcacgttgtt
     2161 ctttgaatat ccaaacgatc caacagcgtg gacgatcgac gatgaataca tgtttggttc
     2221 gagtctcctc gtcgctccac tattcgaacc gggcgacatg cgcaaagttt atttaccggc
     2281 aggaaactgg atcgactacc aaagcaataa aacgtacgaa ggtggtaagt ggcacagtat
     2341 caccgccgga cagatcccgg taatcctgct cgtgaaggat cacaccgtgt tgccgcattt
     2401 gaaggttgcg caaagtacgt cggagatgga ttggaacaat gtggaactgc gcgtgttcag
     2461 ttctgataat tcaccggtgt cgggatcgtt tacgtcgccg acaaccgagg tgctcgggtt
     2521 gaatctcgag aacaccggaa aaggctatgc attaaagagt gatccgctgg cgggcaaagt
     2581 aaaatggcag ataacacgtg ctggagcgaa ttgagtaacc ctttagtgac gccttcacac
     2641 taaaggggat ggcactactt acggcccaac agcttcaggt tcttgtcgat caattcaatt
     2701 ctttgctcaa cgctcgcgtg tgaccgcaac ccgtctgccg gtgtgttgac tacatagtcc
     2761 agtaacttct cgactgtgct ggttgcgacg tgaatgcgcg tgtcggatga tccgtagtag
     2821 atgaacactt cttcatcgcg cacaatccat ccacaactga acagaacgtt cgagacatca
     2881 ccgacccgct catcgccttc gggcgcgagg aagtagccac ctggctgatg agtcatgcgc
     2941 cagggctctt tgagatcgca aaggaataga taaagcacat agcgcaaacc agccgccgtg
     3001 ccgcgtacgc cgtgcgcaag atgcagccaa ccttttccgg tcttgatagg cgccgggccc
     3061 agaccattct ttacttcttt gatcgtg
//
LOCUS       DATCGC010001938         1032 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_294869, whole genome shotgun sequence.
ACCESSION   DATCGC010001938 DATCGC010000000
VERSION     DATCGC010001938.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1032
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_294869"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..257
                     /gene="pilM"
                     /locus_tag="VIJ87_18425"
     CDS             <1..257
                     /gene="pilM"
                     /locus_tag="VIJ87_18425"
                     /inference="COORDINATES: protein motif:HMM:NF022554.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="pilus assembly protein PilM"
                     /protein_id="HEY5446404.1"
                     /translation="KTFDFYRATSEDNHTVVQKILISGGGSKLQGLAQELSARLELPV
                     EVLNPFRNINVDNRKFDAGYISEIMPEMAVAVGLAIRGVN"
     gene            259..975
                     /locus_tag="VIJ87_18430"
     CDS             259..975
                     /locus_tag="VIJ87_18430"
                     /inference="COORDINATES: protein motif:HMM:NF016992.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilN domain-containing protein"
                     /protein_id="HEY5446405.1"
                     /translation="MIKINLLHSVTERQAGTIDIVDQKIGSANSRFLLLALVVGFLAM
                     AFIGWDVLGSRNAKAAAEQELQAQKTREAELQVVINEQKDLEAKINAIDARINAIKTL
                     RANQAGPSAVLEAMRERVSMVPGLYLESVEQKGDQLEFKGNSPDESQVTQFGRSLEFS
                     NGLFSNLNIETKREDVTNNQVSAVAIAQNPDAAKLSIVKFTIKCAYAPSKGATPNASA
                     PTNASATAPAQPAQPQAAKN"
BASE COUNT          286 a          287 c          264 g          195 t
ORIGIN      
        1 aaaagacatt cgacttctat cgcgcgacaa gcgaggacaa tcacaccgtc gtacaaaaga
       61 tcctcatctc aggcggtggt tcaaagcttc agggcctggc ccaggagttg tcggcacgcc
      121 tcgagctgcc cgtagaagtg ctgaatcctt tccggaacat aaatgtcgac aatcgcaagt
      181 tcgacgccgg atacattagc gaaatcatgc ccgaaatggc cgtggccgtg ggtctggcaa
      241 tcaggggagt caactaaaat gatcaagatc aacctactcc actccgtaac cgagagacaa
      301 gctggcacga tcgacatcgt cgatcaaaag atcggcagtg ccaatagccg ctttctcctt
      361 ctggctcttg tcgttggttt cctggcgatg gcctttatcg gctgggacgt tctcggcagc
      421 agaaacgcaa aggcagctgc tgaacaggaa ctccaggcac agaaaacccg agaggccgag
      481 ctgcaagttg ttatcaacga gcagaaagac ctcgaagcaa agatcaatgc gatcgatgct
      541 cgcatcaacg ctatcaagac gcttagagct aaccaggccg gcccaagtgc agtgctcgaa
      601 gcaatgcggg aaagggtttc gatggttccg ggactctatc ttgaaagtgt agagcagaag
      661 ggcgaccagc tcgagttcaa aggcaactcg cctgacgagt ctcaagtcac acagttcggt
      721 cgcagcctgg agttttctaa cgggcttttc tcgaatctta atatcgaaac gaagcgtgag
      781 gacgttacga acaatcaggt atccgctgtt gcaatcgcac aaaatcctga tgcagccaag
      841 ctgtcgatcg taaaattcac gatcaaatgt gcgtacgccc cgtccaaggg cgcaacgccc
      901 aacgcctcgg ccccgaccaa cgcgtctgca accgctccgg cacagccggc acagccccag
      961 gccgccaaga attaaggcct ctccaacgaa atctgtccaa agaaggtaac cacaatgcta
     1021 gagaaaatca ag
//
LOCUS       DATCGC010001939         1195 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_95331, whole genome shotgun sequence.
ACCESSION   DATCGC010001939 DATCGC010000000
VERSION     DATCGC010001939.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1195
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95331"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            132..224
                     /locus_tag="VIJ87_18435"
     tRNA            132..224
                     /locus_tag="VIJ87_18435"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:207..209,aa:Ser,seq:cga)
     gene            346..1131
                     /locus_tag="VIJ87_18440"
     CDS             346..1131
                     /locus_tag="VIJ87_18440"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HEY5446406.1"
                     /translation="MDEQSDKDIASKKQRDQMLKLVAKGFYNELINYGVGQPEVIRVA
                     SHLLDNLLAKGKRPDKDVGYYNGIFTLASVKDEWAERKQLAVQHVTLRPLQKQVVNKV
                     GDWLKDRAVRESFVPAFPENKSKLQEYFTSPTREYFSIDYNNEAVGIIGGENIDTTAG
                     KLEMKKLVGESGLQGKGIGKRATFGFLYYAFIIRNLNKVYIHSRDINIRNINLNSQFG
                     FELEGVFLDDITVADKRQDVVRMALFKPLWLQIFSPGVERAIR"
BASE COUNT          330 a          280 c          318 g          267 t
ORIGIN      
        1 tgggcgacgg gatttaacca agcctagctg gcaaatcttc tcgtttgttc tcatttaatc
       61 tgacgtgcgt ttccataggt aaaaacagcg cgcgctgtgt tctcagctaa tctaaagtga
      121 tcgcaataac cggcgaggtc gtacaaaata gccggataag atttcagcga gggttcaaaa
      181 aattgccacg aattaatccg agggttcgaa tccctccctc accgttttac acgaaccggg
      241 caatgaacat gtcggcgcag gttcatggtc aggttgagca ggaaattaaa acgggcgcga
      301 gtaggtagat ttcaggtccg aacttgcaat agtatggcgg cagggatgga cgagcagagc
      361 gacaaagaca ttgccagcaa gaagcagcga gatcagatgc tgaaactcgt cgcgaaaggc
      421 ttttacaacg aactcatcaa ctacggtgtt ggccagccag aggtcatcag ggtcgcttcg
      481 cacctgctcg acaatctgct agcgaaggga aagagacctg acaaagacgt cggatattat
      541 aacggaatct ttacgctggc gtcggtgaaa gacgaatggg cggagcgcaa gcagctcgcc
      601 gtccaacacg tgacgcttcg tccgctgcaa aagcaggtgg taaacaaggt cggcgactgg
      661 ctcaaagacc gggccgtgcg cgaaagcttt gtaccagcgt ttccagaaaa caaaagcaag
      721 ctacaagagt attttacttc accaacgcga gaatacttca gcatcgacta caacaacgaa
      781 gcggtgggaa ttatcggggg cgagaatatt gacacgacgg cgggcaaact ggagatgaaa
      841 aagctggtag gcgaatctgg cttacagggt aaaggaatcg gaaagcgagc gaccttcggc
      901 tttctttact atgcgtttat aatccggaac ctgaacaagg tttacattca ctcgcgtgac
      961 atcaacattc gcaacatcaa tctgaacagc caatttggtt tcgaactcga aggagtcttt
     1021 ctcgacgaca tcacagttgc cgacaaacgc caggatgttg tccgcatggc tttgttcaag
     1081 ccactctggc tgcaaatctt ttcgcctggt gttgagcgag ccattcggtg aagctcgcct
     1141 taactcagag ttgctgatgt ttgatttgtt ccacttctga tcaggggtcg tcgat
//
LOCUS       DATCGC010001940         2132 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_329475, whole genome shotgun sequence.
ACCESSION   DATCGC010001940 DATCGC010000000
VERSION     DATCGC010001940.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2132)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2132)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2132
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_329475"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1068)
                     /locus_tag="VIJ87_18445"
     CDS             complement(<1..1068)
                     /locus_tag="VIJ87_18445"
                     /inference="COORDINATES: protein motif:HMM:NF012670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446407.1"
                     /translation="MSTPEQKQNSNPELDQLCINTIRTLALDAVQKAQSGHPGLPLGA
                     APMAYVLWTRFLRHNPRNPKWENRDRFLLSAGHGSMLLYSLLYLTGYDLPLEELKNFR
                     QWGSKTPGHPEYGLTPGVEITTGPLGQGFANGVGMAMGAAHLAARFNKADASIIDHFV
                     YAIVSDGDLMEGVASEAASLAGHLKLGKLIYLYDDNHVTIEGFTSLAFTEDVPKRFEA
                     YGWHTLTVSDGNNLDEIEAAIREAQSVTDKPSLISVKTVIGFGMPTQGTRKAHSDAPG
                     EDAVRETKRHLGWPEDKQFFVPDEALARFREAIDRGEKQETEWRALVDAYQSAHAEDS
                     AFLNSTLSGELPANWEEHLPTF"
     gene            complement(1191..>2132)
                     /locus_tag="VIJ87_18450"
     CDS             complement(1191..>2132)
                     /locus_tag="VIJ87_18450"
                     /inference="COORDINATES: protein motif:HMM:NF014801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FGGY-family carbohydrate kinase"
                     /protein_id="HEY5446408.1"
                     /translation="SMASATGLLNQRTCDWDWDLVGALGISPDALPPISRRLNGSLQE
                     EFANRWPQLRKARLTTIVGDGAANNIGGGCAAKDKIALMVGTSGAMRVVFEGEPPTTL
                     PPSLWSYRVDDRRVVVGGALSDGGGLYRWLTQSLIVDQDPIELSRTLSAIDPDSHGLT
                     VLPFWSGERSTGWTGDARGAILGLTQTTTPVEIILAALEAIAYRFALIAGALESVAPG
                     AKIVATGNALRSSPLWSQIITDVLGRQVIFGGSPEASIRGAALLALEAVGKIGSIEEV
                     EISVDDVFEPDMDRHVVYERGLERQEEFYRKLVADLL"
BASE COUNT          508 a          613 c          509 g          502 t
ORIGIN      
        1 aaatgtcggc aagtgctctt cccaatttgc cggaagctca ccagataaag ttgagtttaa
       61 gaaagcggaa tcttcagcat gggcggactg gtacgcatca accagtgccc gccactcggt
      121 ttcctgcttt tcacctcgat ctattgcctc gcgaaaacgc gcgagcgctt cgtcaggcac
      181 gaagaactgc ttgtcttcgg gccacccaag atgccgtttg gtttcgcgaa ctgcgtcttc
      241 acccggcgca tcgctgtgtg ccttgcgtgt gccctgggtt ggcatcccaa aaccaatcac
      301 cgtcttcact gaaatcaaac ttggcttatc ggtaactgac tgggcctcgc gaatcgccgc
      361 ttcgatttca tcgagattgt ttccgtcact aaccgttaac gtgtgccaac cataagcctc
      421 gaaacgtttc ggcacgtcct ccgtgaacgc caggctcgtg aaaccttcga tcgtgacgtg
      481 attgtcatcg taaaggtaaa tcagttttcc gagtttgagg tggcccgcaa gcgacgctgc
      541 ttctgaagcg acgccttcca tcaagtcgcc gtcagaaaca attgcgtaca cgaaatgatc
      601 gataatgctg gcgtcggctt tgttgaacct tgcggcaaga tgcgcggccc ccatcgccat
      661 tccaacgcca ttggcgaatc cctggcccaa tggaccggtc gttatctcga caccgggagt
      721 cagaccatat tcgggatgac cgggcgtctt tgatccccac tgacgaaagt tcttcaactc
      781 ctccagcgga agatcgtaac cagtcagata caacaacgaa taaagcaaca tcgatccgtg
      841 gcctgccgac aacagaaacc ggtcgcggtt ttcccatttc ggatttcggg gattgtgtcg
      901 caggaagcgt gtccaaagga cgtaagccat cggagcggcg cccaacggta atccaggatg
      961 gcccgactgc gctttttgca ctgcatcaag cgccagcgtc cgaatcgtgt tgatgcaaag
     1021 ttgatcgagt tcaggattgg aattttgttt ctgctcaggt gtactcattt tgatgtccga
     1081 taaacttcag tttgtcgtcg agttgcaaag tttcagccgc agattaacgc ggaaattcac
     1141 agatcaaaca aatcatgtaa gaaactcatt tccgctctga ccaggagtct ctaaagcaga
     1201 tcggccacga gtttcctata aaactcttcc tggcgctcaa gtcctcgttc gtagacaaca
     1261 tgtcgatcca tgtcaggctc aaacacgtcg tcaactgaaa tctctacttc ttcgatgctt
     1321 cctattttgc ccaccgcttc gagtgcaagc aaggcagcac cacgaatcga tgcttcgggc
     1381 gatccgccaa atatcacctg cctgcctaat acgtcggtaa tgatttgcga ccaaagcggt
     1441 gatgaacgca acgcgttgcc ggtagcaaca atcttcgcac ccggcgcaac gctttcaaga
     1501 gcgcccgcaa ttagtgcgaa tctataggcg atcgcctcca gtgctgccag aataatctcg
     1561 acgggcgttg tcgtttgagt aagtccaaga atggcgccgc gagcatcacc tgtccaacca
     1621 gtgctccgtt cacctgacca aaatggaaga accgttagac cgtgtgaatc aggatcaatg
     1681 gccgacaaag ttctactcaa ctcgattgga tcctgatcga ctatcaacga ctgggtgagc
     1741 catcggtaca atcctcctcc atccgaaagc gctccgccta cgacaacccg tcgatcatca
     1801 actcgatacg accaaagcga aggaggtaat gtagttggtg gttctccttc gaaaacaact
     1861 cgcatcgctc cggaggtgcc gaccatcaat gcgattttgt ctttcgctgc acatccgcca
     1921 ccaatattat ttgctgcacc atcgccaacg attgttgtca gcctggcttt tcttagctgc
     1981 ggccaccggt tcgcaaactc ctcctggagt gacccgttta aacgacggct aattggcggc
     2041 aacgcatccg gcgagatgcc gagtgcacct acaagatccc aatcccagtc acacgtccgt
     2101 tgatttaaca gacccgttgc ggacgccatc ga
//
LOCUS       DATCGC010001941         1165 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_392516, whole genome shotgun sequence.
ACCESSION   DATCGC010001941 DATCGC010000000
VERSION     DATCGC010001941.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1165)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1165)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1165
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_392516"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(21..96)
                     /locus_tag="VIJ87_18455"
     tRNA            complement(21..96)
                     /locus_tag="VIJ87_18455"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(61..63),aa:Ala,seq:tgc)
     gene            complement(163..236)
                     /locus_tag="VIJ87_18460"
     tRNA            complement(163..236)
                     /locus_tag="VIJ87_18460"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(200..202),aa:Met,seq:cat)
     gene            complement(287..363)
                     /locus_tag="VIJ87_18465"
     tRNA            complement(287..363)
                     /locus_tag="VIJ87_18465"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(327..329),aa:Ile,seq:gat)
     gene            complement(660..>1165)
                     /locus_tag="VIJ87_18470"
     rRNA            complement(660..>1165)
                     /locus_tag="VIJ87_18470"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          263 a          325 c          290 g          287 t
ORIGIN      
        1 tcgattgatc gcatcagctt tggtggaggt gaggggattc gaacccctga ccccatggtt
       61 gcaaaccatg tgctctgcca actgagctac acccccgata agcaccttcc gagatcagac
      121 accgcgatct caaatttcaa atttgaaata ctcggaggtt gattgcgggg gcgggatttg
      181 aacccgcgac ctttgggtta tgagcccaac gagctaccgg actgctccac cccgcgccaa
      241 agtcaggtga ttccaaatct gagatctcgc tttgaaaccc caaaactggt gggcctgggt
      301 agattcgaac taccgacctc acgcttatca ggcgtgcgct ctaaccaact gagctacagg
      361 cccttccaac tccttgcggg ccaattttgc cgcaaaaaag agccacactt ctcttcgttg
      421 cggtccgttg tgaacggtgg acgcgccgga gggccgtgta gcttcggtgg ctaataaagg
      481 ctgcctgcga tctacttgat tccgaatttt gaaagatcta aatccccttg gattcgatat
      541 ctgaagacta gataggcgcg ttcgctaaca agacctgaga gtctggatcg tttggatctc
      601 ttgacgcttc ttgcaacctt gttagattgc gttagtgaag tgtctcaata atcctttaga
      661 aaggaggtga tccagccaca ggttctccta cagctacctt gttacgactt caccccaatc
      721 atggatcata ccgtgggcgc ctgcctccct tacgggttgg cgcgacgact tctagtacaa
      781 cccactttcg tgatgtgacg ggcggtgtgt acaagacccg ggaacgtatt caccgcagca
      841 tgctgatctg cgattactag cgattccagc ttcatggagt cgagttgcag actccaatcc
      901 gaactgagac aagctttttg cgattggctc ccccttgcag gtttgcagcg ctttgtactt
      961 gccattgtag cacgtgtgta gccctggaca taaaggccat gaggacttga cgtcatcccc
     1021 accttcctcc gttttgtcaa cggcagtctc aatagagtgc ccggccgaac cgctggcaac
     1081 tattgataag ggttgcgctc gttgcgggac ttaacccaac atctcacgac acgagctgac
     1141 gacagccatg cagcaccttg cactc
//
LOCUS       DATCGC010001942         2429 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_259546, whole genome shotgun sequence.
ACCESSION   DATCGC010001942 DATCGC010000000
VERSION     DATCGC010001942.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2429)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2429)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2429
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259546"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(76..148)
                     /locus_tag="VIJ87_18475"
     tRNA            complement(76..148)
                     /locus_tag="VIJ87_18475"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(113..115),aa:Gln,seq:ctg)
     gene            complement(393..474)
                     /locus_tag="VIJ87_18480"
     tRNA            complement(393..474)
                     /locus_tag="VIJ87_18480"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(439..441),aa:Leu,seq:caa)
     gene            complement(483..554)
                     /locus_tag="VIJ87_18485"
     tRNA            complement(483..554)
                     /locus_tag="VIJ87_18485"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(519..521),aa:Glu,seq:ttc)
     gene            complement(631..703)
                     /locus_tag="VIJ87_18490"
     tRNA            complement(631..703)
                     /locus_tag="VIJ87_18490"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(668..670),aa:Ile,seq:gat)
     gene            complement(705..1439)
                     /locus_tag="VIJ87_18495"
     CDS             complement(705..1439)
                     /locus_tag="VIJ87_18495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446409.1"
                     /translation="MPTLRDGTDTQDKRLDRLQEFDDRSKDYDIRGLVSETLKTKTWQ
                     CPVWLDQGQEGACVGFSWSHCASAYKDHTRGISNSFAEEKVYWEAQKNDPWPGGAYPG
                     ANPHNDGTSVLSGAKIMQQYGFIDSYRWAFSIDDVLATLSNHGVVEIGIWWRDSMFDP
                     DPSGLLDISGQHVGGHAICVRGHALKRRFPGHGELHVVRLRNSWGKTWGLDGDCFLRV
                     EDLETILNDDGEACIPMGKHSLRQLP"
     gene            complement(1462..1533)
                     /locus_tag="VIJ87_18500"
     tRNA            complement(1462..1533)
                     /locus_tag="VIJ87_18500"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1499..1501),aa:Phe,seq:gaa)
     gene            complement(1616..1705)
                     /locus_tag="VIJ87_18505"
     tRNA            complement(1616..1705)
                     /locus_tag="VIJ87_18505"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1669..1671),aa:Ser,seq:tga)
     gene            complement(2140..>2429)
                     /locus_tag="VIJ87_18510"
     CDS             complement(2140..>2429)
                     /locus_tag="VIJ87_18510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446410.1"
                     /translation="AKPVTRVRLPSLPCKTKVRYLILNHYYGLYGRVVSEADALKYWG
                     EHAHSDPGITWIVAENPEDESLRDQPQPWDPLNVEVVADKSHLQGWLGQGQ"
BASE COUNT          589 a          705 c          580 g          555 t
ORIGIN      
        1 ggatttgaac ccacaatgcc gcaaggccag aagggtttaa gcctcccgcg tataccgttc
       61 cgccacgggc gctagctgcc gagctaggga tcgaacctag actttcctga tccagagtca
      121 ggcgtgtttc cagttacacc actcggcaat aatcttccta tccatggcga caatcttacc
      181 acggccattg aaatcgtgct gtctcaacgt ccaatagatc gtaggctcat caatatcctc
      241 cgccttaggt ttagttagct gccagcgtct ggaatgcgtc cgacaaaata ccttgccagg
      301 gaccactaca tgcccacaga cataacacat acccgtacta tcacgtccat gacgcttagg
      361 attaagctca cgaaatagtt ccttggtcat agtaccggga gcgggatttg aacccgcacg
      421 cttatcaggc atcggggttt gaggccgacg tgtctaccat tccaccatcc cggcataggt
      481 tatagcgcga cggggaatcg aaccccggtt acaggcttga aaggcccgcg tcctaaccat
      541 taaacgaccg cgcctagcga gagagtcgga tgaagtgaac acgcagcgtg ttctatgagg
      601 gtaggataac cgctctctca tacctaccaa tgggcacggt tggaatcgaa ccaacgactt
      661 ccaccttatc agagtggcgc tctaaccgct gaactacgtg cccgttaggg taattgcctt
      721 agagaatgct tgcccatcgg gatgcaagcc tcaccatcat cattcaagat agtctccaag
      781 tcctcaactc gtaagaaaca atctccgtcc agaccccagg tcttgcccca ggagttgcgc
      841 aagcgtacca catgaagctc gccgtgtcca gggaatcgac gcttgagggc atgaccgcgt
      901 acacaaatag catgaccacc gacgtgctgt ccagaaatgt caagcagccc ggaagggtcc
      961 gggtcaaaca tgctatcgcg ccaccaaatg ccaatttcca cgacaccgtg gttagataag
     1021 gtggctagta cgtcatcaat gctgaacgcc caacggtatg agtcaatgaa cccatactgt
     1081 tgcatgatct tcgcacctga caatacagaa gtaccatcgt tgtgcggatt agcgccaggg
     1141 tatgctccac ccggccaagg atcattcttt tgagcctccc aatagacctt ttcctctgca
     1201 aagctattgg aaatacctcg cgtgtgatcc ttgtacgctg aggcgcagtg gctccatgaa
     1261 aaacctacac aagcaccctc ttgtccctgg tctaaccaga ctggacactg ccaagtctta
     1321 gtctttagtg tctcggaaac cagaccacgg atatcgtagt cctttgagcg gtcatcgaac
     1381 tcttgtagtc gatcaagccg cttgtcttgt gtatctgtac cgtcgcgtag agtaggcatc
     1441 acccattacg ctacggaggc atggcgaata ttggagttga accaatgacg cgaggttctt
     1501 cagacctccg ctctaccact gagctaattc gccaagtgaa ggcggttcgc cccgcacctt
     1561 acgaacccga atcgtacgcg gtgggcatag gacactagta atccattacc gccagcggag
     1621 agtgtaggat tcgaacccac gcgccggttc aaggccgacc aacggttttc aagaccgccc
     1681 caatagtcca ctctggcaac tctccatgtc gtgtataaat aagctgcgag aggcatagcg
     1741 tccgcagcta agatagcccg aattgcaagg taaaggtcag gccctaggct catctggcac
     1801 agccggggtg tccgtcccta cgtaggttca ttccaggcca cgactaccta gctgaaacct
     1861 atacctcgga ggcgttcgca gccccaagcg ggtgaagaac cacttcaacc tttaagttta
     1921 gaaacctcct gttcgatgac aaatgataga catttcaacc gacctgagcg tgtccgtgga
     1981 tactgtgttc gcacgcagcg gtcaagcact cggccccata tccttttcgg ctggctactc
     2041 cgtcgccctt gcacagtcat aggtttctaa gggttcccgc cctccaccta atcttcccgc
     2101 acagtatgtg tcagtctata agcctcaggt tctcagccac tattggccct gtcctaacca
     2161 cccttgtagg tgacttttat ctgcgacaac ctctacattg agagggtccc atggttgggg
     2221 ctgatcccgt agtgattcat cctcgggatt ttctgccaca atccaagtga tgccaggatc
     2281 gctgtgagca tgctcccccc aatacttcaa tgcatcggct tcgctcacca ctcggccata
     2341 cagaccgtag tagtgattca agataaggta tctgacctta gtcttgcaag gcaaggacgg
     2401 gagtcgaacc cgtgttacag gttttgcag
//
LOCUS       DATCGC010001943         1972 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_460920, whole genome shotgun sequence.
ACCESSION   DATCGC010001943 DATCGC010000000
VERSION     DATCGC010001943.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1972)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1972)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1972
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_460920"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..395
                     /locus_tag="VIJ87_18515"
     CDS             <1..395
                     /locus_tag="VIJ87_18515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446411.1"
                     /translation="RQNNLDHVTVTDNAGKLQSESWCPLESGSYDELLTFFKRFVAAL
                     AVADTDTVVLLVRYPLRVNRAKNIEISDPETLLRRYAEVFNPAVVKQIRNTAPEAIFC
                     RNSSAMIGNGIVWAHAERGHVALDVLNK"
     gene            617..1651
                     /locus_tag="VIJ87_18520"
     CDS             617..1651
                     /locus_tag="VIJ87_18520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_035718769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS481 family transposase"
                     /protein_id="HEY5446412.1"
                     /translation="MTTADKVIKTKVGVLELGKQLGNVSKACRIMGYSRDSFYRFKEL
                     YETGGEAALAEISRSKPNLKNRIAEASEQAVVELAVAEPGWGQVRAANELKKQGVFIS
                     PAGVRCVWLRHDLENIKKRLKALAAKSQQDGLILSESQVAALEKAKAEKETHGEFESE
                     CPGYCGAQDTFYVGTLKGVGRIYQQTFIDTYSKVVLAKLYDRKTPLTAADLLNDRVLP
                     FFEQHEVSVLRMLTDRGTEYCGNPEHHEYELYLALEDIDHTRTKTQSPQTNGICERFH
                     KTVLNEFYRVTFRKKLYKTIDELQADLDQWLKQYNEQRTHQGRWCYGKTPMQTFIDSV
                     PLAKEKMLAA"
     gene            complement(1715..>1972)
                     /locus_tag="VIJ87_18525"
     CDS             complement(1715..>1972)
                     /locus_tag="VIJ87_18525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446413.1"
                     /translation="QSIDYDRTNHPARGLTLLARLIDDLAREFFNQAIDGVIQNNPKA
                     RANPKALAQLDGYKRPLVSSLSGASAVWDGKSCEDRIALGV"
BASE COUNT          518 a          477 c          551 g          426 t
ORIGIN      
        1 aacgtcaaaa taatcttgac cacgtcactg taaccgataa tgccggtaag ttgcagtcag
       61 agtcatggtg tccccttgag tcaggtagct atgatgagct actcacattc ttcaaacgat
      121 ttgttgctgc gcttgcggtc gccgatacgg atactgtggt tttgcttgtg aggtatccac
      181 tccgagtgaa cagagccaag aacatcgaaa tctctgatcc cgagactctg ctgcgccgct
      241 acgctgaggt cttcaatcca gcagtagtca agcaaattcg aaatacggcg cccgaggcga
      301 tattctgtag gaacagcagt gcgatgattg gcaacggtat agtgtgggcg cacgccgaac
      361 gtggacacgt cgctctagat gttttgaaca aatgacgctg gctaacccgc cgcttgagcc
      421 gacggcgaga ctttgtgaca gtgatctatt ttgccgtagc ggctcagcgg catggggtta
      481 ggcgcgtcgc aggtcccagc aactcagtac ggagaattgg cctcatgtgt aagtgctaag
      541 actaaatctg acaatggtga taaagtcctc gtaggtccta agagcagcgg aaactgcagg
      601 aaggaagcga ggcgagatga caacagcaga taaggtgatc aagaccaagg taggggtttt
      661 ggaactcggc aagcagttgg gcaacgtgtc caaggcctgc cggatcatgg gctatagccg
      721 cgacagtttt tatcggttca aggaactgta cgagaccggt ggcgaagcgg ccctggcgga
      781 gatatcgcgg agcaagccga atctcaagaa ccggatcgcc gaagcgagcg agcaagcggt
      841 ggtggaacta gcagtagctg agccgggatg gggacaagtg cgagcggcca atgaattgaa
      901 gaagcaagga gtttttatct ctccggctgg agtgcgctgt gtctggctgc gccatgatct
      961 ggagaatatc aaaaagcggt taaaagccct ggcggccaag agccagcagg acgggctgat
     1021 tctgagcgag tctcaagtgg cagccttgga gaaagccaaa gcggagaagg aaactcacgg
     1081 tgaattcgaa agtgaatgtc cgggttactg tggagcacag gatacattct atgtcggcac
     1141 tctcaaggga gtgggccgga tctatcagca gacctttatc gatacctaca gcaaggtggt
     1201 attggccaag ctgtatgatc gaaagacacc tctgaccgcc gccgatctac tcaacgaccg
     1261 cgtgttgccg ttctttgaac agcatgaggt ctctgtgctc agaatgttaa ccgatcgggg
     1321 cacggagtat tgcggcaacc cggagcatca cgagtatgaa ctgtacttag ccttggaaga
     1381 catcgatcac acgcgcacca agacccagag tcctcagacc aacggcatct gtgagcggtt
     1441 tcataagacc gtgctcaatg agttttaccg ggtgacgttt cgaaagaagc tttacaagac
     1501 catcgacgag ctgcaagccg acctcgatca atggctcaaa caatacaacg aacaacgaac
     1561 ccatcagggt agatggtgtt acggtaaaac gccgatgcag acttttatcg acagcgtccc
     1621 attagccaaa gagaaaatgc tggcggcgtg agtggaggta aaacaacaac cgacgacgag
     1681 gacttttcag ccgactgtca gatgatgtgt tgacttatac acctaaagcg attcgatctt
     1741 cgcaactctt tccatcccaa accgctgaag ctcccgatag agaactcacc agcggcctct
     1801 tgtagccgtc caattgcgcc agcgcctttg gatttgctct tgccttcggg ttgttctgaa
     1861 ttacgccatc gatcgcctga ttgaaaaatt cacgtgcaag atcatctatt agacgcgcca
     1921 agagagttaa tcctcgcgcc gggtgatttg ttcgatcgta atcaatagac tg
//
LOCUS       DATCGC010001944         1416 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_460933, whole genome shotgun sequence.
ACCESSION   DATCGC010001944 DATCGC010000000
VERSION     DATCGC010001944.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1416)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1416)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1416
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_460933"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            17..>1416
                     /gene="mnmG"
                     /locus_tag="VIJ87_18530"
     CDS             17..>1416
                     /gene="mnmG"
                     /locus_tag="VIJ87_18530"
                     /inference="COORDINATES: protein motif:HMM:TIGR00136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HEY5446414.1"
                     /translation="MLTQNLDTIGQMSCNPAIGGLAKGHIVREIDAMGGAMGLNADAT
                     GIQFRMLNQRKGPSVRAPRVQCDKKAYQFRMKAVLEEAQNLDVKQGTVSRVIDEAGAV
                     IGVETDMGVAIAAGTVIITSGTFLRGLLHVGENSKPGGRMADSSSSLSTNLQEIGFQV
                     GRFKTGTPCRLNGRSIDFTRCSIQLGDEPPSGFAFNLEEIGTGVDEIFTLNRVRGGQF
                     HVEQLPCWITHTTQKTHEIIRANLHRSPLYAGRIKGVGPRYCPSIEDKVVKFSDKASH
                     QLFLEPEGRHTSEYYVNGISTSLPYEVQLAFLHSIPGLEEAEIMRPGYAVEYDYFPPT
                     QLLPTLETKIVSGLYFAGQVNGTSGYEEAAAQGLIAGANAALKIRNRPPLVLSRREAY
                     MGVLIDDLVSKGTEEPYRMFTSRAEDRLSLRHDNADQRLTGRAFDIGLISETRFHSFK
                     EKMDLLEQARLIAVRN"
BASE COUNT          356 a          359 c          389 g          312 t
ORIGIN      
        1 cggttgccgc acactgatgt taacccagaa cctcgatacc atcgggcaga tgtcgtgcaa
       61 ccctgcaatc ggcggactgg cgaaaggaca tattgttcgc gaaatcgacg cgatgggagg
      121 cgcaatgggg cttaacgctg atgcaactgg aattcagttt cgaatgctga accagaggaa
      181 gggcccatcg gtacgtgccc cccgagttca atgcgacaaa aaggcgtacc agtttcggat
      241 gaaagccgtt ttggaggagg cgcagaacct cgacgttaaa caaggaactg tgtcgcgcgt
      301 tattgacgag gccggagcgg ttattggtgt cgagactgat atgggcgtgg cgattgccgc
      361 cgggaccgtc ataatcacct ccgggacatt cttgcgaggg cttttgcatg tcggcgaaaa
      421 tagtaagcca ggaggacgca tggctgactc cagctcaagc ctaagcacaa acctacagga
      481 gataggtttc caagtaggac gattcaagac tggcacgcct tgccgcctga atgggcgatc
      541 gattgatttt acgcgttgct cgattcaact cggtgatgag ccgccctccg ggttcgcctt
      601 caatctcgag gagatcggta ctggtgtcga cgagatcttc acattgaatc gcgttcgtgg
      661 cggtcagttc cacgtggaac aattgccctg ctggattact cacaccaccc aaaagacgca
      721 tgaaatcatc cgagcgaatt tgcacaggtc gccattgtac gccggacgaa ttaaaggggt
      781 tggtccgcga tattgcccct ccattgaaga caaggtggtc aaattctcgg ataaagcttc
      841 acatcagctt ttcctcgaac cggaaggacg ccacaccagt gagtactacg tgaacggaat
      901 ctcgactagt ctgccatatg aagttcagct cgcatttttg cattcaatac cggggcttga
      961 ggaagccgag atcatgcggc ccggctacgc cgttgaatat gactacttcc cgcccacgca
     1021 acttctgccg acacttgaaa cgaagattgt cagcggactc tactttgccg gccaagtcaa
     1081 tggcacctcg gggtatgaag aggcggcagc acaaggattg attgctggag ctaatgccgc
     1141 tctaaagatc cgaaatcgcc cgcctttggt cttaagtagg agagaagctt acatgggcgt
     1201 ccttattgac gatctcgtca gtaaagggac agaagaaccc tatcgcatgt ttactagccg
     1261 agctgaagat cgattgtctt tgcgacacga caacgccgat cagcggttga ccggtcgtgc
     1321 ttttgacatc ggcctcatca gtgagacaag atttcacagt ttcaaagaga aaatggacct
     1381 gctggagcag gcccgcctga tagctgtaag aaataa
//
LOCUS       DATCGC010001945         1164 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_425296, whole genome shotgun sequence.
ACCESSION   DATCGC010001945 DATCGC010000000
VERSION     DATCGC010001945.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1164)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1164)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1164
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_425296"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..202
                     /locus_tag="VIJ87_18535"
     CDS             <1..202
                     /locus_tag="VIJ87_18535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446415.1"
                     /translation="TDLKTLTWALNIADEVALRFPLARWIHHVPYRYNHPIKPECGIG
                     RGESSCAEFSRTGRVHAGQSRR"
     gene            complement(401..>1164)
                     /locus_tag="VIJ87_18540"
     CDS             complement(401..>1164)
                     /locus_tag="VIJ87_18540"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HEY5446416.1"
                     /translation="CANGFLAVRGAVAPDVVRACVDVIENDLRAQSIDVYEPATWTEP
                     VVRLPCPEGPSFAAAATSPALSKMYDVLLGSGHWVRREGVGGTIPVRFPSVKDPDDAG
                     WHIDGSYDVDGKWWVNVHSRYRGLLALFLFTDIGEDDAPTEIIVGSHLDLPRVLVPYA
                     ERGVFFGDVTKDLPDSTLSRPSAFATGTAGDVYICHPFLVHRATWPHRGFGPRIMAQP
                     GIAHSQPFALRDGTNVCPVERAILQGLFSAEHLAI"
BASE COUNT          287 a          332 c          286 g          259 t
ORIGIN      
        1 cactgacctt aagactctca cctgggcatt gaacattgct gacgaagtcg cactgagatt
       61 tcccctggct cgctggatcc accatgttcc ttaccgctat aaccacccaa tcaaaccgga
      121 gtgtggcatt ggtcgggggg aatcatcatg cgcagagttt tcccgcaccg gccgggttca
      181 cgcaggacaa tctcgccgtt gaattaagta tcaactgata aatctaataa ggtttagtaa
      241 gcttgcgctt ccaccaaatc gcgctgctta attgccttgc gatccaagca ctagctaaca
      301 ccttgacttg cgggcattca ctttttcacc gcaaagctat tcaatcttgt gcgtttctgt
      361 gctcttcaat attgaattgg cacaaacgac ggcaccgcct ttatatggcg aggtgttcag
      421 cactgaaaag gccttgaagg atggctcgct ccaccgggca aacattagtg ccatcgcgaa
      481 gcgcaaaagg ctgcgaatgt gcgatcccgg gttgagccat gattcgtggt ccgaaaccac
      541 gatgcggcca tgttgctcgg tgaacaagga acggatgaca gatatataca tcgcctgcgg
      601 ttcccgttgc aaaggcactc ggtcggctca acgtcgaatc aggaaggtct ttcgttacgt
      661 ctccgaagaa aaccccgcgc tcagcataag gtacgagtac gcgtgggagg tccagatgag
      721 agcccacaat gatctcagtt ggtgcatcat cctcgccaat atccgtaaag aggaagagtg
      781 ccagtaaccc acggtagcga ctatggacgt tgacccacca cttaccatca acatcgtagc
      841 taccatctat gtgccagcct gcatcgtctg gatctttcac gcttggaaat cgaactggaa
      901 tggttccacc aaccccttct cgtcgaaccc aatgtcccga gccgagtagc acgtcataca
      961 ttttcgataa cgctggggag gtggcggcgg ccgcgaaaga cggtccttcc ggacagggca
     1021 aacgaactac cggttccgtc cacgtcgcag gttcatacac atcaatggat tgtgcccgca
     1081 aatcattttc gattacgtct acacacgcgc gcacgacgtc aggcgcaacc gcacctcgca
     1141 cggcgagaaa cccgttcgca caga
//
LOCUS       DATCGC010001946         1893 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_159120, whole genome shotgun sequence.
ACCESSION   DATCGC010001946 DATCGC010000000
VERSION     DATCGC010001946.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1893)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1893)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1893
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_159120"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..629)
                     /locus_tag="VIJ87_18545"
     CDS             complement(<1..629)
                     /locus_tag="VIJ87_18545"
                     /inference="COORDINATES: protein motif:HMM:NF014510.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diadenylate cyclase"
                     /protein_id="HEY5446417.1"
                     /translation="MLLLLPYTEYLRRIVEPRNVADIVFVFLLVYGVLKLLRGTRAAP
                     MAAGIAVLVFFYWLSGKQDLATLEFVLSNGLFYIGIAIIVLFQSEIRQALVTFGNRFR
                     MPLTRTHHGQFGEGVYDEVILAATTLASTKTGALIVIERNVGLKNVTDGGVKLDAELS
                     YDLLVSIFNPASPLHDGAVVVRRHRIAAASCFLPLTLNPRLSKELGTRHR"
     gene            complement(711..1658)
                     /locus_tag="VIJ87_18550"
     CDS             complement(711..1658)
                     /locus_tag="VIJ87_18550"
                     /inference="COORDINATES: protein motif:HMM:TIGR01297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HEY5446418.1"
                     /translation="MLAVVGALFANALIALLKLIAALITGSSGMMAEAFHSIADTTNQ
                     VFLLLGLRFYKRPASSKHPFGFGKERFFWSFIAAIFIFGVGATYAIYEGIAKLAHPHA
                     PSHLKWAYWVLGISFVLETASITLAIYQEVNEAHHEGLTFWGYLRESKDPTAKTVLFE
                     DSAALLGIVIAAAGLVLTDFQVGGSAGAYWDGVASILIGLVLAIVAFVLARSSRGLLL
                     GEAASAKTVEAIKKAMETHPNVERVVELLTMHLAPKQILINSHIKLKRGLVLEEVERT
                     IEEVETLIKKAEPKVEMIFLEAARDELLGIQDSAPRAAG"
BASE COUNT          516 a          492 c          453 g          432 t
ORIGIN      
        1 cgatgtcggg taccgagctc tttcgacaag cgtggattga gagttaacgg aagaaagcac
       61 gaggcggccg cgatccggtg acggcgaacg acgacagctc catcgtggag cggactcgcc
      121 ggattaaaga tactgaccaa aaggtcgtag ctaagttcgg catctagttt cactccgcca
      181 tccgtaacgt tcttaagccc gacattgcgt tcaatcacaa tgagtgcccc cgtcttagta
      241 gaagccaagg tagttgccgc aaggatgact tcgtcgtaaa cgccttcgcc aaactgtcca
      301 tgatgagtgc gggtcagtgg cattcgaaag cgattgccaa acgtgactag ggcctgcctg
      361 atttcagact gaaacaggac aatgattgcg atgccaatgt agaagagtcc attgctaaga
      421 acgaactcca gtgtggcgag atcttgtttg ccggaaagcc agtagaagaa aaccagcacc
      481 gcaattcctg cggccatggg agcggcgcga gtgccacgca gcagtttcaa aactccatac
      541 acaagtaaaa agacgaacac gatgtccgcg acattgcgcg gctcaacgat acgtctcaaa
      601 tactcggtgt atggcagtag cagtagcatc tcgtcgtctg aatatcgtga accaagtaga
      661 ggcttaacgg tgacaagtta gtttctccag accagggcga atccctggtc ctagcccgca
      721 gctcgcggtg cagagtcctg aattcctaac agctcatcgc gggcggcctc caaaaagatc
      781 atttccactt ttggttccgc cttcttgatt aatgtttcca cttcttcgat cgtccgttca
      841 acttcttcca ataccagtcc tcgcttcaac ttgatatgtg agtttatcaa gatctgcttt
      901 ggagccaggt gcatagtcaa cagctcaaca actcgttcta cattcggatg cgtctccatc
      961 gccttcttta ttgcttctac cgtctttgcg ctcgcggctt cacctaataa caatccacgg
     1021 gatgagcgcg ccagcacaaa cgcaacgatt gcgagtacta atccgatgag tatcgaagca
     1081 acaccgtccc aataggcacc agcactacct ccgacttgaa aatcggttag cactaacccg
     1141 gcggcggcga tcactattcc aagtagcgcc gctgaatctt caaagagcac cgtcttcgcc
     1201 gttggatctt tcgactcacg caggtaaccc caaaaagtta acccttcgtg atgtgcttca
     1261 ttgacctcct ggtagatagc caacgtgatc gacgccgttt caagtacaaa ggagatgcct
     1321 aatacccagt aggcccattt caagtgcgag ggcgcatgcg gatgagcaag ttttgcgatg
     1381 ccttcgtaaa tcgcgtacgt cgcacccaca ccaaagataa aaatcgccgc tataaaagac
     1441 cagaaaaacc gttctttccc gaaaccgaaa ggatgcttgc tggaagctgg tcgtttgtaa
     1501 aacctaagac ccagcaatag aaaaacctga tttgttgtat cagcaatcga gtggaacgct
     1561 tcagccatca tgccggaaga accggtaatc agggcagcaa tcagctttag caatgcgatc
     1621 aatgcgtttg caaagagcgc ccccacgacg gccaacatac agggattcct tcgagtacaa
     1681 aaatgacagc tctgcttgga ttatggcgaa aaagactaac cgtggcaatg tcttgatctt
     1741 tgaggtactg gttcagtttt cgtcgattgg atgactaaga ggtgccgaga aacccgaatc
     1801 gaaatattaa ctgtttgagt tgaatcaagt gctgcacaaa acaaagtacc ggaagtgcgg
     1861 atacccttta gtaacgcatt cgaactaatg agc
//
LOCUS       DATCGC010001947         1588 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_61508, whole genome shotgun sequence.
ACCESSION   DATCGC010001947 DATCGC010000000
VERSION     DATCGC010001947.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1588)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1588
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61508"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1527)
                     /locus_tag="VIJ87_18555"
     CDS             complement(<1..1527)
                     /locus_tag="VIJ87_18555"
                     /inference="COORDINATES: protein motif:HMM:NF028199.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alginate lyase family protein"
                     /protein_id="HEY5446419.1"
                     /translation="MRRARSKRQISKERASLDSINIEMPKLRLSAKDPEAQLKHFQTR
                     VEPHFLPGANPTSLASLQIEFPEDTEALFKTARQIVTDHSWPLLGFGVKNFGDEIEWS
                     RDPLSGHVWPLDYHRDIQLIRNDGSDARVLWELNRLGHLVKLSTAYAISSDEQFSAEC
                     IAQVQSWAKQNPYGRGVNWNCAMEVALRSMNLLTIFELLKQSIHFNAETLQLFLRLFH
                     QHGTYICRNPEFSHISTSNHYLSDVTGLLWLGLMLPEFVDSEYFFDTGLVEILREMDK
                     QVLPDGADFESSTGYHRFALELFLYSFILCQQNDVDVEPRYWTKLRAMLDYVRCYLRP
                     DGLAPLIGDTDSGQVFPVWQRRADEHAHVLAIGAVFFKDANLVTPNLKVAPELHWFLG
                     DAGVNNFRNLSGNEVDSKSFPHAGTYIMRKGDRYLCFNASGAGINGRGSHGHNDSLSF
                     EVYAAGVAFIVDPGTHVYTADLHQRHLFRSTAYHSTVKIDGEEQNTTLESMPFVIGDE
                     A"
BASE COUNT          396 a          402 c          411 g          379 t
ORIGIN      
        1 cgcttcgtca ccaattacaa atggcatgga ctcgagtgtc gtgttctgtt cttcgccatc
       61 aatcttcacc gtcgagtgat aagcagttga gcgaaaaagg tgtcgttgat gtaagtccgc
      121 agtgtaaaca tgggtccccg gatcaacgat gaaagcaacg ccagcagcat aaacttcaaa
      181 actcagtgaa tcgttatgac cgtgcgagcc tcgtccattt atcccagcgc cactcgcgtt
      241 gaaacaaaga taacggtcac ctttacgcat gatataagtg cccgcatgag gaaacgactt
      301 tgaatcaact tcattgcccg aaagatttcg aaagttgttt actccagcgt cgcccaaaaa
      361 ccagtgcaac tccggcgcta ctttgagatt cggggtaacc aaattcgcgt ctttgaagaa
      421 taccgcccca attgcgagga cgtgcgcatg ctcgtccgct cggcgctgcc aaacgggaaa
      481 cacctggcca ctatctgtat cgccaatcaa cggcgccaac ccgtcaggtc gtaagtagca
      541 gcgcacgtag tcgagcatag cgcggagctt ggtccagtac ctcggttcga cgtcgacgtc
      601 gttctgctga caaagaatga atgagtagag gaaaagttcg agggcgaagc ggtgataacc
      661 tgtcgaagat tcaaagtcgg cgccatcagg cagcacttgc ttatccatct ccctcagaat
      721 ttcgacgagt ccggtgtcga agaaatactc agaatcaaca aactcgggaa gcattaatcc
      781 aagccagagc aagccggtga cgtccgaaag atagtgattg ctggttgaga tgtgggaaaa
      841 ctcggggttt cgacagatgt aggtgccgtg ctgatgaaat aaccgaagga acagttgcag
      901 tgtctcggcg ttgaagtgaa tggactgttt caacaactcg aagatcgtga ggagattcat
      961 tgacctcaac gcaacttcca ttgcgcagtt ccaattgacg ccacgaccgt aaggattttg
     1021 ttttgcccaa ctctgcacct gtgcgatgca ttcagcgctg aattgttcgt cgctgctgat
     1081 tgcgtaagcc gtcgataact tcaccaagtg tccgagtcgg ttgagttccc aaagcacccg
     1141 cgcatccgat ccgtcgttgc gaattagctg aatgtcgcgg tggtaatcaa gcggccagac
     1201 atgtcctgaa agtgggtcac gactccattc gatttcatcc ccaaagtttt tgactccaaa
     1261 acccaacagg ggccacgagt gatctgtgac gatctgccgg gcagtcttaa agagagcttc
     1321 ggtgtcttca gggaattcta tttggagact agcgagcgat gttgggttcg caccaggaag
     1381 gaaatgaggt tcaacgcggg tttgaaagtg cttgagttgg gcttccggat cctttgccga
     1441 caaccggagt ttcggcatct cgatatttat tgaatcgaga ctcgcgcgct ctttgctaat
     1501 ctgacgtttc gatcgtgcac gtctcaacgc ctctcgaacg atcgtctttg gctcgacctc
     1561 gccgcgaagt gcgcgcttca gttttcga
//
LOCUS       DATCGC010001948         2251 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_392589, whole genome shotgun sequence.
ACCESSION   DATCGC010001948 DATCGC010000000
VERSION     DATCGC010001948.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2251)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2251)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2251
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_392589"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..685
                     /locus_tag="VIJ87_18560"
     CDS             <1..685
                     /locus_tag="VIJ87_18560"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF014698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051213 - dioxygenase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TauD/TfdA family dioxygenase"
                     /protein_id="HEY5446420.1"
                     /translation="RNKLEEHRVVVLREFAPLVANAFPAYCQKFGEILEWEFGSVNQL
                     RVKEDAQNYLYTNHAVPFHWDGAFVSRVPHYIFFHCDLAPTEGSGGETLFCDSTRVLS
                     KASTECEEQWKQTVITYTTEKVVHYGGTFTSPMVAKHPLNDTLVLRYAEPVDDINPVE
                     LVIHNLSDEEQAKFISDMSHRLNDERVCYAHRWQTGDVVIADNFTLLHGRRAFEHGTV
                     RDIRRVNVL"
     gene            702..1652
                     /locus_tag="VIJ87_18565"
     CDS             702..1652
                     /locus_tag="VIJ87_18565"
                     /inference="COORDINATES: protein motif:HMM:NF013226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiA family prenyltransferase"
                     /protein_id="HEY5446421.1"
                     /translation="MLRYLVYMLRIRRVEFRIAEIPILAIPLLILLRDSGPLKTFALW
                     EGILIFFLLFAFGDMVNCLADRDLDAVYKPHLSEAVYGLGVRFVTFQVWASALLALAL
                     SIHLSWTMNRWIFLVMVAIGLVLGAAYSVKPVQLKGRGVAQIFCLWLIIFVGPMLFVA
                     FLIDAAISLPVLVFAAAYGALQMGVILVNTAEDYPEDLEAGITTSVISLGLHRGIALA
                     FWLVMGGSIGVLITLLVMLKQREVGPPWILAVVPSILVCVYVLWSIGRLKQTIKDASL
                     QDSIQSVKHDAKRVPLWITLVAWSILGATYVLFRFGSGKL"
     gene            complement(1666..>2251)
                     /locus_tag="VIJ87_18570"
     CDS             complement(1666..>2251)
                     /locus_tag="VIJ87_18570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446422.1"
                     /translation="RDDEGRLVTYALYGGEVREAFRRAAEVSRQVHIRYTGRKYERVV
                     AKLDSHYDELWVGGKASYKLGAIIEEGGELIIYAPHLTKISETHGALIEKYGYAPLES
                     VRDMLGVSQELRENLCIAAHLAHVSYAGRSDADGNIVPRYRITMASGLDEQTCKRVNL
                     GYLDHHHMDWELFRSDPDTLIVENAGRDLYKTHP"
BASE COUNT          504 a          559 c          578 g          610 t
ORIGIN      
        1 gagaaacaag ttagaggagc atagggtcgt agtcctgcgt gaatttgctc cactggtagc
       61 taacgctttt cccgcgtatt gccagaagtt tggagagatt ctggagtggg aatttggatc
      121 agttaaccaa ctgcgtgtaa aagaggacgc gcaaaattat ctatatacca atcacgctgt
      181 gccttttcat tgggacggtg catttgtatc ccgcgttcca cactacatct tcttccattg
      241 cgaccttgca ccaactgaag ggagcggtgg tgaaactttg ttctgcgatt caacacgcgt
      301 tctctcaaaa gcttcaaccg aatgtgagga acagtggaaa caaaccgtta tcacttacac
      361 gaccgagaag gtcgtgcatt acggcggtac tttcacttcg ccaatggtcg cgaaacatcc
      421 gttgaatgac accctggttt tgcgctatgc cgaacctgta gacgatatca atccagtcga
      481 actagtaatt cacaatctgt ccgacgaaga acaagcaaag ttcatcagcg atatgagcca
      541 tcgtttgaac gacgaacggg tttgctatgc gcatcgttgg cagaccggcg atgtggtcat
      601 tgccgataac ttcacactcc ttcatgggcg gcgcgctttt gagcatggaa ccgtgcgcga
      661 catccgccgc gttaacgttc tctagcgact aaactgaaca catgctccgt tatctggttt
      721 acatgctgcg catacgccgg gtggagtttc gaatcgccga gatcccaatt ctggcgattc
      781 cgctgctgat ccttctgcga gacagtggtc ccttgaagac gttcgccctc tgggaaggca
      841 tcctcatttt ttttctgctg tttgcctttg gcgacatggt caactgcctt gcggatcggg
      901 atctggatgc tgtttacaaa cctcacctgt ccgaagccgt ttatggcttg ggtgtgcggt
      961 tcgtaacttt ccaagtttgg gcaagtgcac tactcgcgct tgctttgtcc atccatctct
     1021 catggacaat gaatcgctgg atattcctgg taatggtagc gattggactt gtactgggtg
     1081 cggcgtattc ggtgaaacct gtccaactca agggacgagg cgtcgctcaa atcttttgct
     1141 tgtggctcat catctttgtt ggcccaatgt tgtttgtagc gtttctaatc gatgcggcta
     1201 tctcacttcc ggttcttgtg ttcgccgctg catacggagc gctgcagatg ggagtcattc
     1261 tcgtaaacac cgcggaggat tatccggagg atctcgaagc cggaattaca acgagtgtga
     1321 tctcgcttgg attgcaccgc gggattgcac ttgcgttttg gctggtgatg ggtggttcga
     1381 ttggtgttct aattactctg ctggtgatgt tgaagcaacg cgaagttggg ccaccgtgga
     1441 tcctggccgt tgttccctca atactggttt gtgtttatgt tttgtggtcg atcggccgac
     1501 tcaaacaaac aatcaaagat gcgagcctcc aggacagtat tcaatcggtc aagcatgatg
     1561 ctaaacgagt tcctctttgg atcactcttg tggcctggtc gatactgggc gcgacttacg
     1621 tactatttcg ttttggttca ggaaaactgt gaagatctaa aagttctacg gatgggtctt
     1681 gtataggtcg cgaccggcgt tttcaacaat caaggtgtca gggtcagaac gaaatagttc
     1741 ccaatccatg tggtggtgat caaggtaacc aagattcaca cgtttgcaag tttgctcgtc
     1801 taaaccactc gccatcgtaa ttcgataacg aggaacaata tttccgtcgg cgtctgagcg
     1861 acctgcgtac gacacgtgag cgaggtgggc agcgatacaa agattctcgc ggagctcctg
     1921 tgaaactccc agcatgtcgc gaacactctc gagaggtgcg tatccatact tctcaatgag
     1981 ggcaccgtga gtttctgaga ttttggtgag atgcggagcg tagataatta actcgccacc
     2041 ctcttcaatg atcgctccga gtttgtaact cgcctttccg ccaacccaca gttcgtcgta
     2101 atgcgaatct agcttcgcaa caacgcgctc gtactttcgc cctgtgtagc gaatatgaac
     2161 ctgacggctg acctcagctg cacgacggaa cgcctcgcga acttcaccac catacaaggc
     2221 gtaggtgaca agcctgcctt cgtcgtctcg c
//
LOCUS       DATCGC010001949         1150 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_460968, whole genome shotgun sequence.
ACCESSION   DATCGC010001949 DATCGC010000000
VERSION     DATCGC010001949.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1150)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1150)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1150
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_460968"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1017
                     /locus_tag="VIJ87_18575"
     CDS             <1..1017
                     /locus_tag="VIJ87_18575"
                     /inference="COORDINATES: protein motif:HMM:NF013717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin dinucleotide binding
                     domain-containing protein"
                     /protein_id="HEY5446423.1"
                     /translation="PSLAEVAKEINGRALGDLNDPTQPGVTIKAGQQLPGFAWLKDDG
                     TTACGNWLYSGSWTEAGAQMQRRGTDDPSGLGIYQNWAWSWPANRRVMYNRASCDPSG
                     RPWDNERRQVWWNEAQQKWVGNDVPDFKADSKPSDHMGPFIMNPEGVGRIFAPLAAFA
                     DGPFPEHYEPVESPIANPLHPNQSNNPVAKKFKSDMDRLGTPAEGYNVVCTTYRLTEH
                     YHYWTKNNPMNVQLVPEPFVEVPAQLADEMGIHGGEKVKVTSARGEYVAKAMVTKRIK
                     PMMIDGKKTYQIGIPIHWGYRGIAEDEGKTSLMTANQLSPAAIDPNAYTPEFKGFLVK
                     IEKA"
BASE COUNT          311 a          288 c          319 g          232 t
ORIGIN      
        1 ccttcgctcg ctgaagttgc gaaagagatt aacggcagag cactcgggga tcttaacgat
       61 ccaactcaac cgggagtgac catcaaagcg gggcagcagc tgcctggatt tgcctggtta
      121 aaagatgacg gcacgaccgc gtgtggcaac tggctctatt caggatcatg gactgaagcg
      181 ggcgcgcaga tgcagcggcg tggcaccgac gatccttccg gtcttggtat ttatcagaac
      241 tgggcctggt catggccggc aaatcgtcga gtgatgtaca accgcgcgtc atgtgatccc
      301 tcaggaaggc cgtgggataa cgaaagacgt caagtttggt ggaatgaagc gcaacaaaaa
      361 tgggtcggca acgacgtgcc tgatttcaaa gctgattcca aaccttcgga ccacatggga
      421 ccgttcatca tgaatccgga aggtgtggga cgtatcttcg cgccgctggc cgcatttgct
      481 gatgggccat tccctgagca ttacgaaccg gtcgaaagtc cgatcgcgaa tcctttgcac
      541 ccgaatcaat ctaacaatcc ggtcgctaag aaattcaaat cggatatgga taggctcggc
      601 actcccgcag aaggctacaa cgttgtctgc acgacgtatc gattgactga gcactatcac
      661 tattggacca agaacaatcc gatgaacgtg caacttgtgc ctgagccgtt tgtagaagtg
      721 ccggcgcaac tcgccgatga gatgggaatc cacggtggcg aaaaagttaa ggtcacaagt
      781 gcgcgtggcg aatacgtcgc aaaggcgatg gtgaccaagc gaattaagcc aatgatgatc
      841 gacgggaaga agacctatca gatcggtata ccgattcatt ggggctatcg cggtattgcg
      901 gaggatgaag gaaagacttc attgatgacg gcaaatcaac tttctccagc agcaatcgat
      961 ccgaacgcat acacacccga attcaaaggt tttctggtaa agatcgaaaa ggcctgaaat
     1021 gagcaaccca caaacatttc aaatccagga gatctcggcc catccgggac ctgttcccgg
     1081 tcaaggcacc cagcgggcag aggaagtctg caagtacatt gacgtgacga cctgcatcgg
     1141 ttgcaaagcc
//
LOCUS       DATCGC010001950         1133 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_460985, whole genome shotgun sequence.
ACCESSION   DATCGC010001950 DATCGC010000000
VERSION     DATCGC010001950.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1133
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_460985"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..921)
                     /locus_tag="VIJ87_18580"
     rRNA            complement(<1..921)
                     /locus_tag="VIJ87_18580"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          218 a          345 c          260 g          310 t
ORIGIN      
        1 gcacccgccg tgtgtctccc gtgctcagca ctcttcggta ttcggagttt ggttaggttt
       61 ggtagccggt gaaggcccct agcccatcca gtgctctacc cccaaaggtg atacacgagg
      121 cgctacctaa atagctttcg cagagaacca gctatctcca cgtttgatta gcctttcacc
      181 cctagccaca actcatcccc ggctttttca acagacgtgg gttcggccct ccagtgcgtg
      241 ttaccgcacc ttcagcctgg tcatggctag atcacgtggt ttcgggtctc attcgtctaa
      301 ctcaacgccc tattcagact cgctttcgct gcgcctccgc cctacggctt aagcttgcta
      361 gacaaacgaa ctcgctgacc cattatacaa aaggtacgag gtcaggactt gcatccctcc
      421 ctctgtttgt aggcatccgg tttcaggtct atttcactcc ccttgtcggg gtgcttttca
      481 cctttccctc acggtacttg ttcgctatcg gtcgtgcgcg agtacttagg cttggaaggt
      541 ggtcctccca tgttcagaca ggattgcacg tgtcccgcct tactcgagga ccaaagtgct
      601 ttctaccggt acggggctat cacccactat ggccgacctt tccaggtcgt tcccgttctt
      661 acactctggc cactggcctg gtccgcgttc gctcgccact actaacggag tctcggttga
      721 tgtcctttcc tccaggtact tagatgtttc agttccctgg gttagctccc tttcgggtga
      781 cctaaatggt cgggtttccc cattcggaaa tccccggatc aaagcttatt cgcagctccc
      841 cgaggcttat cgcagcgtat tacgtccttc atcgcctgca tgcgccaagg catccactag
      901 atgctcttaa ggcacttgat cgttctcatt atcgatgtcc gcaacgcacc tgacgtcttg
      961 taatcgtcag gatctgtcat cggactagaa cgaaatttgt ccacgtctca cgacgtggtt
     1021 ttttgatcgg tcagatcaaa ttaaccagaa ttcacgtgct tacactgttc ctccccgggg
     1081 tacgggtcaa acggacagta aagcatctct aaacgatgtc gaaagatccg gca
//
LOCUS       DATCGC010001951         1704 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_95452, whole genome shotgun sequence.
ACCESSION   DATCGC010001951 DATCGC010000000
VERSION     DATCGC010001951.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1704
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95452"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            170..571
                     /locus_tag="VIJ87_18585"
     CDS             170..571
                     /locus_tag="VIJ87_18585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446424.1"
                     /translation="MVLLAVLFASLALSEDFKTTSGKVYKDATVSRVEGDGIVLKTER
                     GIFKVYFTELPRDVQERFHWAPPEAPREPFYSRWAAAAEDPAVLAKIIAFGTSLIASV
                     ALVINHIRSRRQPTIGAGRTSRRKTVHRRRS"
     gene            817..1014
                     /locus_tag="VIJ87_18590"
     CDS             817..1014
                     /locus_tag="VIJ87_18590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446425.1"
                     /translation="MEMTKAIANLRQQIHDDLRRQHPEWVLPNGESPMCDAYEARLMD
                     LLALVPGLYYEDRLEWQHIGN"
     gene            1152..1634
                     /locus_tag="VIJ87_18595"
     CDS             1152..1634
                     /locus_tag="VIJ87_18595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446426.1"
                     /translation="MNALLLLVITLLFLSGPFVNAGPVGDFFKKVGQSISKPLQREPQ
                     SQPQPQSMPPQPAKTPHATRRPTSRAASSAAATPRAGAEPSQPPKEEESAGPVRRVSA
                     ADMEKIKAELPYGVPVPGRKGMVTSPYLPEEDKYIDVTGFASGSVVRDPYTGKFFLVP
                     "
BASE COUNT          405 a          447 c          454 g          398 t
ORIGIN      
        1 gctcgacaaa gatgcgaagc caacggttga gcaagcactg cgtgattcca aacttttgcc
       61 ctgaatgctc taaacagcct gtagacagaa ggtgagagtc aattttatcg ttgccgtgtg
      121 gatacggaaa acggcagaat cccgccgcgt gagatattgt agaaccactg tggtacttct
      181 ggcagtcctg ttcgcgtcac tcgcgctttc ggaggacttc aaaaccacta gcggcaaggt
      241 atacaaagat gcgacggtga gccgcgtcga aggggatggg atagtgctta agactgaaag
      301 gggaatcttt aaggtgtatt tcaccgaact tcctcgagac gttcaggaac ggtttcattg
      361 ggcgccaccg gaggcgcccc gcgagccttt ctacagtcgc tgggcagcgg cggccgagga
      421 tccggctgtt ctggcaaaaa tcatcgcttt cgggacttct ctcatcgcca gcgtagcgct
      481 tgttatcaat catatccgtt ctcgtcgaca gccaacaata ggagcaggac gcacatcgcg
      541 acggaaaacg gttcatcgta ggcgctcatg aaatttccga cagtatgcgg aactcgttcg
      601 agcattggtg ccctcaagcg ttttgtctgc gtaccgatga aagctgacta cgttttcgcg
      661 actagaattc ctcgattcga tttcgtttaa ctgaatcccc gacaactcgg gacttttgat
      721 cagtaattct ctgatggtgt aatcagcttg accgattacg taccacagac gctcgaaagg
      781 cgaatttctt ttggaggtaa tcaagggaga gtggttatgg aaatgaccaa ggcaatcgcg
      841 aatctccggc aacagattca tgacgatctt cggagacaac atcccgaatg ggttctgcca
      901 aacggcgaat ccccaatgtg cgacgcctac gaggcgcggc tcatggacct gctcgcactt
      961 gtgcccggct tatattacga ggaccgcctg gaatggcagc acatcggaaa ttagatcgag
     1021 ggactagcgt tctatagccg acatttggtt gcgccacgcg ataccacccg cggcccgcgg
     1081 gaaaaatttc ttttctttgg gtcttagggg tccaacgtaa acaaacgatt cgattcactg
     1141 agttgtcggc gatgaacgcc ttattgttgc tcgtaatcac gcttttgttc ctgagcggac
     1201 cctttgtaaa cgccggtccg gtgggagact tcttcaagaa agttggtcaa tcgatttcca
     1261 agcctcttca acgtgagcct cagtctcagc ctcaacctca gtcgatgccc cctcaacctg
     1321 cgaagacgcc gcacgccacg cggcgaccca cttcgcgagc agcatcttcg gcagcagcga
     1381 cgccacgcgc aggcgcagaa ccatcacaac cccctaaaga agaagagtct gctggccctg
     1441 tccgacgtgt ttcagccgcg gatatggaaa aaataaaggc tgagttgccc tatggagttc
     1501 cggtcccagg ccggaaaggc atggtgacga gtccttatct gccggaagag gacaagtata
     1561 tcgatgtcac cggttttgcg tccgggtctg tcgtgagaga tccatacaca ggaaagtttt
     1621 ttctggttcc gtaaacaccc cgcctgtcat gcgttgatca cattgaaggc gttaagtgat
     1681 tgtcgattga cgttcggtgc tcac
//
LOCUS       DATCGC010001952         1261 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_295137, whole genome shotgun sequence.
ACCESSION   DATCGC010001952 DATCGC010000000
VERSION     DATCGC010001952.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1261)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1261)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1261
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295137"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(118..765)
                     /locus_tag="VIJ87_18600"
     CDS             complement(118..765)
                     /locus_tag="VIJ87_18600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446427.1"
                     /translation="MSTLFHGRVAILLLGLLAAVFASAQNPNPLTERAYQDREILYEL
                     QTPESHAFRITHDYTVRKAGEKYYFNVVRSGSHVTDPDSIDLDTGAKLKWEIISGKQA
                     TERKLPITETLKDDSEIVVTHLRRPLAPGTTNRIRLMETYIDPKSYYLDGEELVWDRT
                     FGRLRNTVVLPRGWYLTGLSSPSTIQTLPDGRVAIYVVNPRNDEVRVYLRARRRL"
     gene            complement(766..>1261)
                     /locus_tag="VIJ87_18605"
     CDS             complement(766..>1261)
                     /locus_tag="VIJ87_18605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446428.1"
                     /translation="VTETRSGARFHFNPIREGSEASDESVVDLATGKPLKFEVVTGVQ
                     AKTDSPSENFNANGHYIKVVLAHPVPAGGEYRLAIIKTYKDDKSYYPEGDLIVFKRPL
                     GIPRNSVLLPAGYEVVSCSVATQVLREADGRLKLAFVNPGSGGQLDVTIRAKKLKSKP
                     AGSP"
BASE COUNT          280 a          343 c          344 g          294 t
ORIGIN      
        1 tacttgaccg tgcaataaca aagcggtgcc aggccaccgc actccaaaga cgacgatcag
       61 aatcaacagc aacgatttca tcgtgagaga ctcgacgcga tgcatgtggg gcaaatctca
      121 aagtcgccgg cgagcccgta agtagacacg tacttcgtcg tttcgcggat ttaccacata
      181 gattgcgacg cgcccgtcgg gcagcgtttg aatcgtcgaa ggcgacgaca gcccggtcag
      241 ataccaacct cgcggcaata caactgtgtt gcgaagccgc ccgaacgtgc gatcccaaac
      301 cagttcctcg ccgtcgaggt agtaactctt cggatcaata taggtttcca tcaggcgaat
      361 ccggttggtg gttccgggtg cgaggggtcg ccgcagatga gtgacgacaa tctcgctgtc
      421 gtccttgagt gtttcagtga ttggaagttt gcgctcagta gcctgcttgc cgctgatgat
      481 ctcccacttg agctttgcgc cggtgtcgag atcgatgctg tcaggatcgg taacgtgact
      541 cccgctcctc acgacgttga aataatattt ttcgccggct tttcgcacgg tgtaatcatg
      601 cgtgatgcgg aacgcgtgcg actcaggcgt ttgcagttcg tagagtatct cccgatcttg
      661 ataggcgcgt tcagtgagcg gatttggatt ctgcgcggag gcgaagacgg ctgccaacag
      721 gcccagcagc agtatcgcca ctcttccatg aaatagtgta gacatctatg gagagcccgc
      781 cggtttggat ttcagcttct tcgcccgaat agtcacgtcg agttgtccac cactacctgg
      841 gttaacgaac gcaagtttca gacgaccatc ggcctcccta agaacctgag tcgcaactga
      901 gcaggaaacg acttcgtagc cggccggcag caacacactg ttacgcggga tgcctaacgg
      961 ccgtttgaag acaatgagat caccctccgg ataatagctc ttgtcgtcct tatacgtttt
     1021 gattattgcc agacgatatt cgcctcccgc gggtacgggg tgagccagaa ccactttgat
     1081 gtaatgacca ttcgcgttga aattctcact tggggaatca gtctttgctt gaacgccggt
     1141 gacgacttca aacttcaaag gtttgcccgt cgccagatcg acaaccgatt cgtccgaggc
     1201 ttcgctgcct tcacggattg ggttgaagtg aaagcgtgcg ccggagcgcg tctcagtcac
     1261 t
//
LOCUS       DATCGC010001953         1554 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_127879, whole genome shotgun sequence.
ACCESSION   DATCGC010001953 DATCGC010000000
VERSION     DATCGC010001953.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1554)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1554)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1554
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127879"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            118..507
                     /locus_tag="VIJ87_18610"
     CDS             118..507
                     /locus_tag="VIJ87_18610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446429.1"
                     /translation="MSMEPGKDFAHSASDLTDAEISRFFKVVEEVRVKYAGRKNSVEN
                     LESLRDETLTRLMDIGILATMDPSPCFYGEPPVIEVVGKVQGDSLHKHGFDHEQKGWE
                     VNKANERNEQWLGQKEPLNKRKDDKGK"
     gene            547..>1554
                     /locus_tag="VIJ87_18615"
     CDS             547..>1554
                     /locus_tag="VIJ87_18615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446430.1"
                     /translation="MDFFDEITRGLATRKVSIEEYCESDQYCGKRLYPRQLVLLKLMF
                     LEELTGPEEDILDHWIRGGRDGREIVISPKIRERVEYLRTAGYSHFRECVLVGGRRSS
                     KGFITGLALAKKMYDTLQLQDPGLYYNIDPDKEIYFSCLASAQDQAKKYQYADFSSTV
                     ARCEAMQQNITKIQELEFSVATEADKQRMNRWKRQGGRVGRDISKLRGVALAANAATL
                     RGSATIAICFDEMAHMQQEGESAATAASVYDAAIPALAQFGKDAMIFCNSSPYTKIGK
                     FYERYEDGLKLTEDGKVVAPFMFTFQFPSWALFEGYQGHRSQYHKGVPLRKAITQSPD
                     WD"
BASE COUNT          420 a          369 c          402 g          363 t
ORIGIN      
        1 agcatcggga ctcatgcatc ccatggctgt atccgcatga gcatcaccga tgtaatagaa
       61 ctgtacgatt tgttaccctt gtggtcaccc attcacatct acgcatagga gaaagttatg
      121 tcgatggaac caggcaaaga ctttgcccac tcagcgagcg acctcactga cgcagagatt
      181 tctagattct ttaaggtagt cgaggaagtt cgtgtcaaat acgcgggacg caaaaactcg
      241 gtagagaatc tagaaagcct aagggatgaa actcttacac gcctcatgga tattggcatt
      301 ctcgctacga tggacccgtc accgtgtttt tacggtgagc cacctgtcat cgaagtcgtt
      361 ggcaaagtcc agggcgactc gttacataag cacgggttcg atcatgagca gaagggctgg
      421 gaagtaaaca aggccaacga aagaaacgaa cagtggcttg gtcagaagga gccattgaac
      481 aaaaggaaag acgacaaggg aaaataattt tccttgtaga ttttattata ataaagatta
      541 taaacaatgg acttcttcga tgagataaca cgcggcttgg ctactcgcaa ggtatccatc
      601 gaagaatact gcgagtccga tcagtattgt ggcaagcgtc tgtatcctcg ccagcttgta
      661 ctactcaagc tgatgttcct tgaggaactg accgggccag aggaagatat ccttgaccac
      721 tggatcagag gtggccgcga tggtagagaa atagttatct ctcccaagat cagggagcgc
      781 gtagagtatc tacgcacggc aggctactca cacttccgtg agtgcgtgct agtaggagga
      841 cgacgttcct ctaagggatt catcaccggc ttggcactag ccaagaagat gtatgacact
      901 ttacagttac aggatcctgg tctgtactac aacattgacc cggacaagga aatctatttc
      961 tcttgtctcg cctcggctca ggaccaggct aagaagtatc agtacgctga cttctcatct
     1021 actgttgcaa ggtgcgaggc catgcagcag aacatcacta agattcagga gctagagttt
     1081 tctgtagcaa ctgaggctga caaacagcgc atgaataggt ggaagcgtca aggtggccga
     1141 gtaggtcgtg acatttccaa gctacgtggg gtagccctcg cagccaatgc tgcaacgctt
     1201 cgtggttctg ccaccattgc catttgcttt gacgagatgg cacacatgca acaggaaggt
     1261 gaaagtgctg ccactgctgc gtctgtctat gacgcagcca taccagcgct ggctcagttt
     1321 ggtaaagatg ccatgatctt ttgtaactct tccccgtata ccaagatcgg gaagttctac
     1381 gagagatatg aggacggtct gaaactaaca gaggatggta aggtagttgc gccattcatg
     1441 ttcaccttcc agttcccttc gtgggcattg tttgaaggct accagggcca ccgctcacaa
     1501 tatcacaagg gcgtgccgct gcgcaaggcc atcacgcagt ccccagattg ggac
//
LOCUS       DATCGC010001954         1787 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_493265, whole genome shotgun sequence.
ACCESSION   DATCGC010001954 DATCGC010000000
VERSION     DATCGC010001954.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1787)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1787)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1787
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_493265"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            267..1505
                     /locus_tag="VIJ87_18620"
     CDS             267..1505
                     /locus_tag="VIJ87_18620"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family transcriptional regulator"
                     /protein_id="HEY5446431.1"
                     /translation="MIKVVQLGHTFTRKPNLANVKAAGHDMLRLVNRRILLNILSDRQ
                     PISRAEIAKISGLNKGTISTITSELLKDGCVIEDGSGRTTPIGGKPPTPLRLNGLRFG
                     LFGLDVRADETILALSDFNNHLVARLSFETGNDPLAFLSRIGKEISKLRAQHNDFIEF
                     AGIGVSLPGLVDNHSGKFLTSVVLPWRDVPVVQLLEKATRMSVVIDNSARCSALAEIW
                     HSKAQYAHLRNLLYVSVSTGLACGVVIDGGLYRGGNNTAGQFGHISIDLNGPECRCGQ
                     RGCWDLFASDKATLSRYGQLRGSSTKRKTTMRKLMELVDEGDPVATEAVRQTARYLGM
                     GITGLINGLDPEVVVIGGEITRCWGLIEPIIAQETKRSLLAPRVNGVAIRRSAFEVRP
                     SLKGALTLIQKDLLSVPHVG"
     gene            1514..>1787
                     /locus_tag="VIJ87_18625"
     CDS             1514..>1787
                     /locus_tag="VIJ87_18625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446432.1"
                     /translation="MLDSSRELVSAMNRLKDQGKVEWIHNRMVDGLIAATPIPFDADG
                     KLHEAAHQTYLRYMASQPISGVAVWAHTGRGLMLDFKTAQRVLRDWR"
BASE COUNT          422 a          453 c          491 g          421 t
ORIGIN      
        1 tgacgttgac ccggcaaccg gccgattgct accaatcacc aggtttgacc ccaacccaga
       61 ttttggccgc atcaacacga gcaccacgca ggagggcatt gataaccggc ggacaatacg
      121 gctgcggctg cgcctctcat tctgaagtta gagcgtggat gggccaggcg tgagtaaggg
      181 gcagaaggcg caacttctgc cccactccca agtctctggg ccagtcttcg cgcatcgagc
      241 gaagatgagc aggaggtgac tctccgatga tcaaggtagt tcaactcggg cataccttca
      301 cacgaaaacc gaatctcgcc aacgtcaagg ccgcgggtca tgacatgctg cggctggtaa
      361 atcgtcgcat cctgctcaac atcctttctg atcgtcagcc aatatcgcgg gcggagattg
      421 cgaaaattag cggtctcaac aaagggacca tctcaacgat caccagtgag ttactaaaag
      481 atgggtgcgt catcgaagac ggttctggga gaacgacccc gatcggtgga aagcctccaa
      541 cgcctcttcg cctaaatggc ctgcgctttg gtttgtttgg attggatgtt cgtgctgatg
      601 aaaccatcct ggcgctaagt gactttaaca atcatctcgt cgcccggctg agttttgaaa
      661 ctggtaacga tccccttgct ttcctctcca gaatcggcaa agagatttcc aagcttcgcg
      721 cccaacacaa cgacttcatc gaatttgccg gtataggtgt tagcctgccc ggtcttgtcg
      781 ataaccatag tgggaaattt ctaacctcgg ttgtgttgcc gtggcgcgat gtgcctgtgg
      841 ttcagctatt ggagaaagcc acgcgcatgt cagtcgtcat agacaactcg gcccgctgct
      901 ctgcactggc tgaaatatgg cacagcaagg cgcagtacgc tcacttgcgt aacttacttt
      961 atgtcagtgt cagcacaggt ttggcgtgtg gcgttgttat tgatggtggg ttgtatcgag
     1021 gtggtaacaa taccgctgga caattcggtc atatatcaat cgatctaaat ggtcctgaat
     1081 gtcgctgcgg acaacgtggt tgttgggatc tttttgcctc agacaaagca acgctcagcc
     1141 gttacggcca gctgcgaggt tcttcgacga aacggaagac taccatgcgt aagcttatgg
     1201 agttggtaga cgaaggagac cctgtggcaa cagaagctgt gcgtcaaacg gctcgttacc
     1261 tgggaatggg aatcaccggt ctaatcaacg gtttggatcc tgaggtcgtg gtgatcggcg
     1321 gagagatcac caggtgctgg ggactaatcg agcccattat tgctcaggaa acaaaacgaa
     1381 gtttgctggc cccgcgtgtt aacggcgtcg ctatccggcg gtcagctttt gaggtccgac
     1441 caagtttgaa aggcgcgctc acactgatcc aaaaagatct tttatccgtg ccccacgttg
     1501 gttgaagtgt gcaatgctgg atagttcccg tgaattggta tcagcgatga acaggcttaa
     1561 ggaccagggt aaagtagagt ggatccataa ccgaatggtc gacggtttga tcgctgcgac
     1621 tccaattccc ttcgatgcgg atggcaaact tcacgaagca gcacatcaaa cctaccttcg
     1681 ttacatggca agccaaccta tttccggagt ggctgtatgg gctcacacag gtcgaggtct
     1741 aatgcttgat ttcaaaaccg cgcagagagt cttgcgcgat tggcgtg
//
LOCUS       DATCGC010001955         2708 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_461032, whole genome shotgun sequence.
ACCESSION   DATCGC010001955 DATCGC010000000
VERSION     DATCGC010001955.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2708)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2708)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2708
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_461032"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2708
                     /locus_tag="VIJ87_18630"
     CDS             <1..>2708
                     /locus_tag="VIJ87_18630"
                     /inference="COORDINATES: protein motif:HMM:NF012862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004197 - cysteine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="caspase family protein"
                     /protein_id="HEY5446433.1"
                     /translation="YDAQSDREIRELSFNATPEAENSSLAFSADARLVAFAKTSEAVS
                     VQETMTGRELYSINTGLSKTPQRVQFSSDGRLLFTATDNNSGASMKVWDAITGQLVRE
                     LKPSGDALTGARVITFNRDGSLIAVVAAGAKAIRIFESGTGNESRSLQTGSTNDVTRT
                     EQAAFIKTIDPKTIVMLQKRDITTPEQIIEAVETMATISSEKLQAGGAVSFSVDGRFL
                     ISTHVLLKNLTTEVWDTAAGMLVRGNDDAALRNRGKPFFSPDGLFRSAPFFGMKSFYT
                     TANGINVFSDVYKDVYKQKIDLYDGESDKRLQELDGGKAPEMGIVPAAGFSFDGKLIA
                     MTGFEKKDRSIIVYETGTGRKVNSLQINDDEQSGAVTTLCLSADARLLAAGYATKIDI
                     FEVASGKTLRTLPHAGRIVSISFSPDGRFLVALGENNDKYIWNATTGEKLATLVNLGG
                     VLNSRGSDWLVVTPDGLFDGSPAAWKQILWQFGGNTFDVAPAETFFNEFYYPGLLADV
                     MAGKQPHAPKNISLLDRRQPELKLMKQSGQEEGTTAERKLALKLEVTEKPADKDHNSG
                     SGARDVRLFRNGSLVKVWRGDVLNGQTSVTLEANIAVLAGENKFAAYAFNRDNVKSKD
                     ATLDLTGASSLKRPGTAYVLAIGVNTYSNQQYNLKYAVADATAFGDEVQRAQKQIANY
                     ERVEVASLLDEQATKANILTAFKLLAGTQVNLTADAPAALQKLKATQPEDAVFIYFAG
                     HGTAHGQRFYLLPHDLGYAGARNALDTAGFQLILEHGISDEELALAVEGIDADKLLMV
                     IDACNSGQALEAEERRRGPMNSKGLAQLAYEKGIYILTAAQSFEAAQEVSELGHGLLT
                     YALVEEGLKRSSADDNPKDGEVWVREWFDYATTRVPNMQMEKVKKS"
BASE COUNT          697 a          670 c          760 g          581 t
ORIGIN      
        1 tttatgacgc acaaagcgac cgtgagattc gggaactgtc atttaacgcg acccctgaag
       61 cggaaaattc gagcctcgcg tttagcgctg atgcgcgtct cgtcgccttc gctaaaacga
      121 gcgaggcggt gagtgtccag gaaacgatga cgggtcgcga gctctatagc atcaacacag
      181 gattgagtaa gacgcctcag cgggtgcaat tcagcagcga cggacgtctc ctgtttaccg
      241 ccactgataa caactcgggt gcctcgatga aggtgtggga cgccataacg ggtcaactgg
      301 tgcgcgagct aaaacccagt ggagatgcgc tcacgggcgc gcgagttatt actttcaatc
      361 gcgacggaag cttgattgct gtggtggcag cgggagctaa ggcaatcaga atctttgagt
      421 ccggaacggg aaatgaatct cgctctctcc aaaccggatc cacgaacgat gtgacgcgaa
      481 ccgagcaagc tgcgttcatt aagacgatcg atcccaagac aattgtgatg cttcagaagc
      541 gcgacatcac tacgcctgaa caaatcattg aggctgtgga aacgatggca actatttcca
      601 gtgaaaagct tcaggctggc ggtgctgtaa gtttcagcgt cgacggtcgc ttcctgattt
      661 caactcatgt gcttttgaaa aatctaacga cggaagtttg ggacactgct gcgggaatgc
      721 ttgtgcgtgg aaacgacgac gcagcgctgc gaaaccgtgg caagcctttc tttagtccgg
      781 acggactctt cagatcagct cctttcttcg ggatgaagag tttctacact actgccaacg
      841 gaattaatgt cttcagcgat gtctataaag atgtgtacaa acaaaagatc gatctctacg
      901 acggagagtc cgacaaacgt ctgcaggagc tggacggagg aaaggcccct gagatgggca
      961 ttgttcccgc ggcgggtttt agtttcgacg gcaagctcat cgcgatgacc ggcttcgaga
     1021 aaaaagatcg ttcaataatc gtttacgaaa caggaacagg tcgtaaggtt aacagtctgc
     1081 agatcaatga cgacgaacag agcggtgcgg tcacaacgct ttgcttaagc gccgatgcgc
     1141 gtttgctggc tgcagggtac gctaccaaga tcgatatatt tgaagttgcc tcaggcaaga
     1201 cattgcggac cttgccacac gctggacgaa tcgtctccat cagcttcagc cctgatggac
     1261 gttttctcgt agcgctcggg gaaaacaacg acaagtacat ttggaacgca acgactggtg
     1321 aaaagctcgc aacgcttgta aatctcggcg gtgttctcaa cagccgcggg agcgattggt
     1381 tagttgttac tcccgatggt ttattcgacg gctcacccgc cgcatggaaa caaatcctct
     1441 ggcaatttgg tggcaacaca ttcgacgtcg cacctgcgga gaccttcttc aacgaattct
     1501 actatcccgg tttactagcc gacgtgatgg ctggcaaaca gccgcacgct ccgaaaaaca
     1561 tttcactgct ggaccgtcgt cagcccgaac taaagttgat gaagcagagc ggacaggaag
     1621 agggtactac cgcggaacgc aagctggcgt tgaagcttga agtaactgag aagccagcag
     1681 acaaagatca caactcggga agtggcgcgc gcgatgttcg gctattccga aacggctccc
     1741 ttgtaaaagt ttggcgcggt gatgttctga atggtcagac ttcagtgact ctggaagcca
     1801 acattgctgt ccttgccgga gagaataaat ttgcggcgta cgcgttcaat cgcgataacg
     1861 ttaagagcaa ggacgctacg ctggatctca cgggtgcgag tagtctcaag cgacctggta
     1921 ccgcttatgt tctcgccatc ggcgtcaaca cttattccaa tcagcaatac aatctcaagt
     1981 acgccgttgc cgacgcgaca gcgtttggcg atgaggtgca acgcgcacaa aagcagatcg
     2041 ccaactacga gcgcgtggaa gtcgcatcgc tcttggacga gcaagctacg aaagcaaaca
     2101 ttctcacagc cttcaagctg cttgcaggaa ctcaggtaaa cttgaccgct gatgctcccg
     2161 cggcactaca aaaactgaaa gcaacgcaac ccgaagatgc agtctttatc tactttgcgg
     2221 gacatggaac cgctcatggg cagcgctttt atttgttgcc gcacgacctt ggctacgctg
     2281 gtgcgcgaaa cgcgcttgat accgcgggat tccaactgat cctcgaacat ggcatctcgg
     2341 atgaggagtt ggcgctggcg gttgaaggaa tcgatgcaga caagttgctg atggttattg
     2401 atgcttgtaa ttccggccag gcgctcgaag ccgaggagcg acggcgaggc ccgatgaact
     2461 caaaggggtt agcacaattg gcctacgaga aagggatcta catcctgact gcagcacaga
     2521 gttttgaagc ggcacaggag gtttcagaac tggggcatgg cctgttgacc tacgcgctgg
     2581 tagaagaagg actgaagcgt agttcagcag atgataatcc caaggacggt gaagtgtggg
     2641 tacgtgaatg gttcgactac gcgaccacgc gggtgcctaa catgcaaatg gagaaagtta
     2701 agaagtcg
//
LOCUS       DATCGC010001956         1983 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_425393, whole genome shotgun sequence.
ACCESSION   DATCGC010001956 DATCGC010000000
VERSION     DATCGC010001956.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1983)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1983)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1983
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_425393"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1983
                     /locus_tag="VIJ87_18635"
     rRNA            <1..>1983
                     /locus_tag="VIJ87_18635"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          498 a          455 c          629 g          401 t
ORIGIN      
        1 cacggaactc gtgaaattcc gtgtgaatct ggcgggacca cccgttaagc ctaaatactc
       61 cttgatgacc gatagcggac aagtaccgtg agggaaaggt gaaaagtacc cctggcgggg
      121 agtgaaatag tacctgaaac cgtgtgccta caatccgtca gagcctgggc cccctggtgg
      181 ggtggtgggt gatggcgtgc cttttgaaga atgagcctgc gagtttgtgt tgtgttgcga
      241 ggttaacccg tgtgggggag ccgtagcgaa agcgagtctg aatagggcgt tgcagtggcg
      301 tgatctagac ccgaagcgaa gtgatctacc catggccagg ttgaagcgac ggtaagacgt
      361 cgtggaggac cgaacccact tcagttgaaa atggagggga tgagctgtgg gtaggggtga
      421 aaggccaatc aaacttcgtg atagctggtt ctccccgaaa tgcatttagg tgcagcgttg
      481 cgtgtttctt accggaggta gagctactgg atggctaatg ggccctacaa ggttactgac
      541 gtcagccaaa ctccgaatgc cggtaagtga gagcgcagca gtgagactgt gggggataag
      601 cttcatagtc gagagggaaa cagcccagac caccaactaa ggcccctaag cgtgtgctaa
      661 gtgggaaagg atgtggagtt gcacagacaa ccaggaggtt ggcttagaag cagccaccct
      721 tgaaagagtg cgtaatagct cactggtcaa gtgattccgc gccgacaatg taacggggct
      781 caagcacgcc accgaagttg tggcattgac atttgtggta ggccttcgtg gtccagccgt
      841 gttgatgggt aggagagcgt cgtgtggcga gtgaagcggc ggggtgaccc agccgtggac
      901 gctacacgag tgagaatgca ggcatgagta gcgaaagacg tgtgagaaac acgtcctccg
      961 aaagaccaag ggttccaggg tcaagctaat cttccctggg taagtcggga cctaaggcga
     1021 ggccgacagg cgtagtcgat ggacaacggg ttgatattcc cgtaccggcg aagaaccgcc
     1081 caaaccaatc cagtaatgct aagtgtctga atccctttga ctgatccctt cggggtgacg
     1141 cgttgggcct agcacacgac cctatgctga ggcggttagc gtattaacag gtgtgacgca
     1201 ggaaggtagc ccaagccagg cgatggttgt cctggtgcaa gtgcgtaggc cgagtgatag
     1261 gcaaatccgt cactcataca ggctgagaca cgatgcggat gaaaagtggg tgatcctatg
     1321 ctgccaagaa aagcatcgac gcgaggttct agccgcccgt accccaaacc gactcaggtg
     1381 gtcaggtaga gaataccaag gagatcgaga gaatcgtggt taaggaactc ggcaaaatgc
     1441 ccccgtaact tcgggagaag gggggccttc gacgtattag gacttgctcc gaaagcgttt
     1501 ggaggccgca gagactagtg ggtagcgact gtttactaaa aacacaggtc cgtgccaagt
     1561 cgcaagacga tgtatacgga ctgacgcctg cccggtgctg gaaggttaag aggaccggtt
     1621 agccgcaagg cgaagctgag aatttaagcc ccagtaaacg gcggtggtaa ctataaccat
     1681 cctaaggtag cgaaattcct tgtcgggtaa gttccgacct gcacgaatgg cgtaacgact
     1741 tcccagctgt ctcaaccgcg aactcggcga aattgcacta cgagtaaaga tgctcgttac
     1801 gcgcagcagg acggaaagac cccgtgacct ttactacagc ttggtattgg tgttcggtgt
     1861 ggcttgtgta ggataggtgg gagactgtga aaccctcacg ccagtggggg tggagtcaac
     1921 gttgaaatac cactctggtc gtactagatg tctaaccttg gtccgtgatc cggatcaggg
     1981 aca
//
LOCUS       DATCGC010001957         1206 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_227632, whole genome shotgun sequence.
ACCESSION   DATCGC010001957 DATCGC010000000
VERSION     DATCGC010001957.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1206)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1206)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1206
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227632"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1076)
                     /locus_tag="VIJ87_18640"
     CDS             complement(<1..1076)
                     /locus_tag="VIJ87_18640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446434.1"
                     /translation="MNKTIPWSLGLSFIVVSGLIWTFTPKASTNNNKLQEVSKTLQDG
                     PAPAYRSPGARHKVTASDEKSAAALEAQGARLIADYGGYKLFDVSSDLAAKTNNLAGV
                     ETGDENNLVLLNSGSIDTTTSEAQDMRSAKGGGATTGRQMHLIQFAGPIMHEWYDALV
                     ATGVRVVTYIPNNAYLVYGDSKSINSVRALATRPYVQWENAYRSEHRLAPTITAAINR
                     TANAEKNSTQGKLANLSAKGNQLFAIQLVNDPAENAITLALIDRLKLEPIVRQAKVLD
                     YVNIVVSLPADQVGGELANRADVVSIAPWMVPRKMDERQDMIIAGNLTGGTTPTPGDY
                     LAYLAAHSFTNTTTTFGVNISDSG"
BASE COUNT          260 a          305 c          332 g          309 t
ORIGIN      
        1 atgccgctgt cgctgatgtt tacgccgaaa gttgtcgttg tgttagtaaa actgtgcgca
       61 gccagataag ccaggtaatc tcctggagtc ggtgtggtac cacctgtcaa gttaccggca
      121 atgatcatgt cttggcgttc atccatcttg cggggcacca tccacggcgc aatcgagacc
      181 acatcagcgc ggttcgcgag ttccccgcca acttgatcgg cagggagtga cacgacaatg
      241 tttacataat ccagaacctt ggcttgacga acgattggtt cgagcttcag gcggtcgatg
      301 agagccaacg tgatcgcgtt ctccgcagga tcgtttacca actggatcgc gaatagctgg
      361 ttcccttttg cgctcagatt cgccaacttt ccttgcgtgg aattcttttc ggcattggcg
      421 gttcgattga tcgctgccgt gattgtcggc gccagtcgat gctcgcttct gtaagcattt
      481 tcccactgga catatggtcg agtggcaagt gcccttaccg aattgatcga tttggaatcg
      541 ccataaacta gataggcgtt attcggaatg taagtgacga cgcgaacgcc ggttgctacg
      601 agcgcgtcgt accattcatg catgatcgga ccggcaaact ggattaggtg catttgtcga
      661 ccagtcgttg cgccgccgcc ttttgctgag cgcatatctt gagcttcgct ggtggtggta
      721 tcgattgagc cggagttgag cagcaccagg ttgttctcgt cccctgtctc tacgccagcg
      781 agattgtttg tcttcgccgc aagatcactc gacacatcaa agagtttgta gccaccgtag
      841 tcggcaatta gacgagcgcc ctgggcttcc agcgcagccg ctgatttttc gtcgctcgcg
      901 gtcactttat ggcgagcgcc gggactccgg taagcgggcg ccggaccgtc ctgcaatgtt
      961 ttactgactt cttgtagttt gttgttgttg gtgcttgcct tgggtgtgaa agtccagatg
     1021 agtccggaca caacgatgaa actcaaacct aacgaccatg gaatagtctt attcatcgga
     1081 caacgctcct tgaaggaaag tggtgagtgc gcgtcattag aacccggttt gaccaacagg
     1141 ttcagaccaa aaagaatgtc gaataaaacc cgaaataaga gcagtcaacg ggtcaattgt
     1201 cggggg
//
LOCUS       DATCGC010001958         3066 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_195863, whole genome shotgun sequence.
ACCESSION   DATCGC010001958 DATCGC010000000
VERSION     DATCGC010001958.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3066)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3066)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3066
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195863"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..524)
                     /locus_tag="VIJ87_18645"
     CDS             complement(<1..524)
                     /locus_tag="VIJ87_18645"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY5446435.1"
                     /translation="MIGQTVSHYRITEKLGEGGMGVVYLAEDKHLARRVAIKFLSSTD
                     HHYRARFIREARAVSALSHPNIATVHDYGETDEGQPFIVMEYVKGMTLSAVLDDGLTM
                     LRSVEIVSSIAEALGEAHEHGIVHRDIKPSNVVINERGQVKVLDFGLVKHLFEQPSSG
                     VDLDADTLYSTQTR"
     gene            complement(873..1457)
                     /gene="purE"
                     /locus_tag="VIJ87_18650"
     CDS             complement(873..1457)
                     /gene="purE"
                     /locus_tag="VIJ87_18650"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: protein motif:HMM:TIGR01162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009320 - phosphoribosylaminoimidazole
                     carboxylase complex [Evidence IEA];
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HEY5446436.1"
                     /translation="MAKKTTKKKQTSKTNKSAPTDGITPSSRPPVSPSASPLVGIIMG
                     SQSDWDTMRNASETLTQFGVAHECRVISAHRSPSLASEFASTAESRGFEVIIGAAGGA
                     AHLAGVLAAHTTLPVLGVPMRSEALNGLDSLLATVQMPGGIPVATLAIGKPGAVNAAL
                     FAVSILANSRPELREKLHRFRAVQEEKIRATVLV"
     gene            complement(1494..2948)
                     /locus_tag="VIJ87_18655"
     CDS             complement(1494..2948)
                     /locus_tag="VIJ87_18655"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: protein motif:HMM:NF006673.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HEY5446437.1"
                     /translation="MSTRIPITVANGDGIGPEIMDATLRILEAAGAPLDIERIDIGEK
                     VYLAGNSSGIEPSSWDSLRRTKVFLKAPITTPQGGGFKSLNVTVRKVLGLYANVRPCV
                     SYHPFVETKHPKMDVVIVRENEEDLYAGIEYRQTADVMQCLKLISRPGSEKIIRYAFE
                     YARRNSRKKVTCFTKDNIMKLTDGLFHKIFDEIAAEYPTIENEHWIVDIGAAKLADTP
                     EAFDVVVMPNLYGDILSDVAAQIAGSVGLAGSANIGEHVAMFEAIHGSAPRRAGQNLA
                     NPSGLLLGAVMMLVHIGLTEHAERVHNAWLRTVEDGVHTYDIYDESVSKQKVGTKEFA
                     DAVIERLGQVPQIVKAAKYQAAEGGNPEGAGASAAKPAPKKELVGVDVFLDWTSGSAT
                     NLGEGLSKVNDDNLKLTMISNRGVAVWPGGHAETFCSDHWRCRFMSASTGSVEPLQIV
                     GLLGRIVDAGYDAIKTENLYTFDGQIGFTLSQGE"
BASE COUNT          717 a          807 c          811 g          731 t
ORIGIN      
        1 ctgcgagttt gagttgagta aagagtgtcg gcatcaagat cgaccccgct cgatggttgc
       61 tcaaataagt gtttgacgag accaaagtcg agaaccttca cctgaccgcg ctcattgatc
      121 acgacgtttg agggtttgat atcgcggtgg acgatgccgt gttcatgagc ctcacccagg
      181 gcctcagcaa tcgacgagac gatctcaacc gagcgaagca ttgtcaggcc gtcgtccagg
      241 acagcgctga gagtcatgcc cttcacatat tccatcacga taaacggctg gccttcgtca
      301 gtttcgccgt agtcgtgaac ggtggcaatg tttggatggc ttagtgcgga gacggcgcgc
      361 gcttcacgaa taaaacgcgc gcggtaatgg tggtcggttg aactgagaaa cttgatagca
      421 acacgccggg caaggtgctt gtcttcggcc aggtagacca cacccatccc gccttctccc
      481 agtttttcgg taattcgata atgagaaact gtctgaccga tcatgctcaa tggaaatcct
      541 tcgcgcgcga gaaaggaaga aaagtggaat tcagagtggc tccagggaaa cggaacgtgc
      601 tctgggctgc gtgtttacat tgacggcatt ttgcgctaaa ggacagacaa attcaaggaa
      661 ggacataaaa ccagaaaaag atattggtca ttggtcattt tccatttttc atttgtcatt
      721 ggtgttcgcc gccgagagag aagaagacct taaggcgtaa agccaaagac cgctttcagc
      781 aacagggacc aagaccgact tcccaggacc ttccccaaaa gtgacaaatg agaaatggaa
      841 aatgaccgat gaccaatgat ctttttctga ctttacacga gcactgtggc gcggatcttt
      901 tcctcctgga ctgcgcggaa acggtggagt ttttcgcgaa gttctggacg actattcgcc
      961 aatatggaca cggcgaagag tgcagcgtta acagcgccgg gcttaccaat ggcaagcgtc
     1021 gcgacgggaa ttccgccggg catctggact gtagccagca acgagtcgag accatttaac
     1081 gcttcacttc gcatgggaac accaagtacc ggcagcgttg tgtgagcagc cagaacgccc
     1141 gccaggtggg ccgcacctcc ggccgcgcca ataatgactt caaacccacg cgactcggcg
     1201 gtcgatgcaa actctgaagc aaggcttggt gatcgatgcg cagagatcac tcgacactca
     1261 tgcgccacac caaactgtgt gagtgtttca ctcgcattac gcatcgtgtc ccagtcagac
     1321 tggctgccca tgataattcc gacgagagga gaagcggacg gggagacagg gggacgggaa
     1381 gacggggtga tgccatcagt tggagcactc ttgttagtct tactggtttg ctttttctta
     1441 gttgttttct ttgccatcgc ttattctccg cgtctccccg tttctccccg tctctattct
     1501 ccctggctga gcgtgaaccc aatttgtccg tcaaatgtgt agaggttctc cgtctttatt
     1561 gcgtcatacc cggcatcgac tattcgtccg agcaacccaa caatttgcaa aggctcaacc
     1621 gacccagtgc ttgcagacat aaaacgacag cgccagtgat ctgagcagaa cgtctccgcg
     1681 tgtccgcctg gccataccgc gacgccacga ttactgatca tcgttagctt caaattgtcg
     1741 tcgttcacct tgctcaaacc ctcgcccagg ttcgttgctg aaccggaggt ccagtcgagg
     1801 aaaacgtcca ctccgacgag ttccttcttc ggcgcaggtt tggcagcgga ggctcccgcc
     1861 ccttcaggat taccgccttc ggcagcctga tattttgcag ctttgacaat ctgaggaact
     1921 tgaccgagtc gttcgatcac agcatcggca aactctttgg tgcccacctt ctgcttgctg
     1981 acgctttcat cgtagatatc gtaggtgtga acgccatctt caaccgttcg caaccacgcg
     2041 ttgtgcacgc gttcggcgtg ttcggtaagt ccgatgtgaa ccaacatcat gaccgcaccc
     2101 aacaacaagc ccgacgggtt agcgaggttc tgtcctgcgc gacgaggagc cgatccgtga
     2161 atggcttcaa acatcgcaac gtgctcgccg atgtttgccg aaccagccag gccaactgaa
     2221 ccggcaatct gggctgcgac gtccgagagg atgtcgccgt aaagatttgg cataactaca
     2281 acatcaaatg cttccggcgt gtcagcaagt tttgcagcac cgatgtcgac gatccagtgt
     2341 tcgttttcaa tggtcggata ctctgcggcg atctcatcga agatcttgtg gaaaagaccg
     2401 tcggtcagct tcatgatgtt gtctttcgtg aagcaggtga ccttcttgcg gctgttgcga
     2461 cgcgcatact caaaagcgta acggatgatc ttttccgaac caggacgcga tatcagtttc
     2521 aaacactgca tgacgtcggc ggtctgtcga tactcgatgc cggcgtacaa atcttcttcg
     2581 ttctcgcgaa cgatgacgac gtccatcttt gggtgtttgg tctcaacaaa cgggtgatag
     2641 gaaacacacg gacgaacgtt ggcgtagagt cccagaactt ttcgcacagt gacattgaga
     2701 cttttgaagc cgccaccctg tggcgttgtg attggtgcct tgagaaagac tttggtgcgt
     2761 cgcagtgaat cccatgagct cggctcaatc cccgaagagt ttccagcaag ataaactttc
     2821 tcaccaatat caattcgctc gatgtcgagt ggggcgccgg ctgcttcaag aatgcgcagc
     2881 gtggcgtcca ttatttccgg gccaatgccg tcgccattcg cgacagtgat agggatacgt
     2941 gttgacatta tttccaaagc ctttcgggga ttaatttgtt gttttcgaga agcagggaat
     3001 ataagccaaa ctgcattaac gggcaatcgg gtgaggcaga gctttgtgct ttgaacttag
     3061 tgcttt
//
LOCUS       DATCGC010001959         1171 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_363023, whole genome shotgun sequence.
ACCESSION   DATCGC010001959 DATCGC010000000
VERSION     DATCGC010001959.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1171)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1171)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1171
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_363023"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1082)
                     /locus_tag="VIJ87_18660"
     CDS             complement(<1..1082)
                     /locus_tag="VIJ87_18660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446438.1"
                     /translation="MVKEPGVTLELAWKPLDGGISWPAADGNPGIKVMLHDILAGAGS
                     AEAAYVTDRDKASAQVQGIWGGFIRPVSTNGGYTLTNDWLQMVTEEQPYLNLLFEGWT
                     AGRGQLVLNIKKDGQTIGEYPPVYIELKDVKDMYERYTVGDVIEAGVNYSAPWPTSHA
                     TKVAASAFVAPTDETKDYILYVHGWNMSPFDKDNYGDTSFKRLWWQGYKGRFGCFRWP
                     TFWFADGEKGSWLGEGSVRIPGTDIFIPNPKHFDASEHRAWASSLGLLDLCNQLNGQG
                     FSGKLRLIAHSMGNVVVGEALRRAQSGQVIHTYIASQAALSAHCYDSTTQDMEFYIGF
                     GPDTPDAYAHYFDSNATSYMHADVMAG"
BASE COUNT          282 a          323 c          263 g          303 t
ORIGIN      
        1 ccagccatta cgtcagcgtg catataactc gttgcgtttg agtcgaaata gtgagcgtaa
       61 gcgtcgggcg tatctggccc aaacccaatg taaaattcca tatcctgcgt agttgagtca
      121 taacaatgtg cagagagcgc agcctgcgac gcaatatatg tgtggattac ctggccgctc
      181 tgtgcgcgtc gaagtgcttc acccacaacc acgttcccca tactatgggc gataagtcga
      241 agctttccgg aaaaaccttg gccgttcagt tggttacata aatcgagcaa cccgagtgag
      301 gaagcccaag cccggtgttc actagcgtcg aaatgcttgg gattgggtat gaaaatgtcg
      361 gttccgggta ttcggactga accttctccc aaccaagatc ccttttcacc gtccgcaaac
      421 caaaatgtag gccatctgaa acatccgaat cgacctttat atccctgcca ccacaatcgc
      481 ttaaaggaag tgtctccgta gttgtcctta tcgaaaggag acatattcca tccatgcaca
      541 tacaaaatat agtctttcgt ttcatcagta ggtgcaacaa aggcggacgc tgctaccttt
      601 gtcgcgtgcg atgtcggcca gggagcgcta tagttaactc ccgcttcaat tacatcacct
      661 acggtgtaac gttcgtacat atccttcacg tcttttaact caatataaac cggcgggtac
      721 tctccaattg tttgaccatc tttcttgatg ttaagcacaa gttgtcctct accggcagtc
      781 cacccctcga acaggagatt caagtatggt tgttcttctg taaccatttg taaccagtca
      841 ttggtcaagg tgtagccacc attggtactc accggtcgga tgaatcctcc ccaaatgccc
      901 tggacctgag cgctcgcctt gtctctgtcc gtcacgtaag ccgcctcggc actccccgct
      961 ccggctagta tgtcatgtaa catcaccttg atcccgggat tcccgtcggc ggctggccaa
     1021 gagattccgc cgtcaagcgg tttccaagcg agttccagag ttacccctgg ttctttgacc
     1081 aaatcgacga tccctttgaa gttgatccaa aggcgcgacc agtcttctag atcacgttca
     1141 cacaataggc cttgattgtt gaaatctgga g
//
LOCUS       DATCGC010001960         1083 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_30678, whole genome shotgun sequence.
ACCESSION   DATCGC010001960 DATCGC010000000
VERSION     DATCGC010001960.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1083)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1083)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1083
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30678"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            164..655
                     /locus_tag="VIJ87_18665"
     CDS             164..655
                     /locus_tag="VIJ87_18665"
                     /inference="COORDINATES: protein motif:HMM:NF028509.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HEY5446439.1"
                     /translation="MNANALFVGLALTTFVAVASPSPVFSQQGPPPSERAKQVEALVT
                     KAATLIDNQGKAVFEDFRKKDSEWFHGDTYLFVYDINANVLLNPAFPKREGTNVSGQK
                     DAKGKLFHNEIIKTAGTKGSGWVDYMFPKPGQTEPSQKWTFVKKVTIDGTPGLVASGF
                     YPE"
     gene            complement(864..>1083)
                     /locus_tag="VIJ87_18670"
     CDS             complement(864..>1083)
                     /locus_tag="VIJ87_18670"
                     /inference="COORDINATES: protein motif:HMM:NF016292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate binding protein"
                     /protein_id="HEY5446440.1"
                     /translation="DGGGLMAYDVIIPDLHRSAALYVDRILKGAKPSELPVQQPSSVR
                     FVINLKTAKALGLKLPSALLSIADELIE"
BASE COUNT          298 a          270 c          281 g          234 t
ORIGIN      
        1 cgcaaagcag tgcgaccgac gtgaacaaac tttaatttgt ttgacgctgc tgcgatctca
       61 aaatgggatc aggatcagct ctgatttccg agcacggccc ggcctcaaaa tggaccctac
      121 cagcaggggc gacgcactac ataaagtcat agggagatcc ccaatgaacg ccaatgctct
      181 atttgtgggg cttgcgctta cgacgtttgt cgcggttgct tcgccttcgc cggtattttc
      241 tcagcaaggt ccgcctccgt cagaaagagc aaaacaagtc gaagcgctgg tcaccaaagc
      301 tgcgacactc atcgataatc aaggaaaggc agttttcgag gatttcagaa agaaagacag
      361 cgaatggttc cacggtgaca cgtatctgtt tgtctacgat ataaacgcga acgtattgct
      421 caatcccgct tttccgaagc gtgaaggaac taacgtgagt ggtcaaaagg atgcaaaggg
      481 caagctattt cataatgaaa ttataaagac agcaggaacg aaaggatcag ggtgggtcga
      541 ttacatgttt ccgaagcctg gacagactga gccttcgcag aaatggacct tcgtgaagaa
      601 ggtaacaatc gatggcactc cgggcttagt cgcctcaggc ttctacccgg aatagtcatt
      661 gaaccgagcg acacctggtc agatgtccgc tttgggtcac aagcggacgt tcgcaccgaa
      721 aaacggcacg tccgctttgg ccccaatatc gaccaagaaa gcagacttcc gcaaactgtg
      781 atgtctgctt gaccgctaag agcggacatg tgcgctgcaa aacagaatgt ctgctaaggg
      841 ccaatagcgg tcatcaaaca actttattca atcaactcgt cggcgatgga gagcaatgcg
      901 gacggcaact tgaggccaag cgccttggca gtcttgaggt tgataacgaa cctcacacta
      961 gatggctgct ggacgggaag ttctgaaggt ttcgcacctt tcaatatcct gtcgacgtag
     1021 agtgcggcgc tcctatgcag atcaggaata attacgtcat aagccatcag gccaccgccg
     1081 tca
//
LOCUS       DATCGC010001961         1931 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_295252, whole genome shotgun sequence.
ACCESSION   DATCGC010001961 DATCGC010000000
VERSION     DATCGC010001961.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1931)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1931)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1931
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295252"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..778
                     /locus_tag="VIJ87_18675"
     CDS             <1..778
                     /locus_tag="VIJ87_18675"
                     /inference="COORDINATES: protein motif:HMM:NF018533.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA-formamidopyrimidine glycosylase family
                     protein"
                     /protein_id="HEY5446441.1"
                     /translation="SIEGKKVREIRRLGKRICWRFDGELWLVLHLMIAGRLHWYEDRA
                     KAMKARGLAVFEFENGSLVLTEAGTQKRASVHLVEGNEGLTKLDPGGLEVFEATLDKF
                     TTTLQRKNHTLKRALTDPRIFSGIGNAYSDEILFEAKLSPFALTQKLMPDEIEGLFAA
                     IKKCLTTWVERFRAETTDKFPGKVTAFRPEMATHGKYKEPCPRCGSKIQRIRYAANET
                     NYCPTCQTGGKLLADRALSQLLKKDWPRSPEELEMMLRDK"
     gene            complement(951..1433)
                     /gene="ybaK"
                     /locus_tag="VIJ87_18680"
     CDS             complement(951..1433)
                     /gene="ybaK"
                     /locus_tag="VIJ87_18680"
                     /inference="COORDINATES: protein motif:HMM:TIGR00011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Cys-tRNA(Pro) deacylase"
                     /protein_id="HEY5446442.1"
                     /translation="MPQKTNAVRLLDQMGINYELREYEVDLDDLTAESVAAKVGLPAE
                     QVFKTLVARGDRNGICIAVIPGDTEVNLKALANASGDRKIHLVAMKELLSLTGYIRGG
                     VTAFAGKKDYPVYVDETIELFDVVSVSAGTRGLQILLKPDDYLRVTKGTIAAIGEDVR
                     "
     gene            complement(1439..1687)
                     /locus_tag="VIJ87_18685"
     CDS             complement(1439..1687)
                     /locus_tag="VIJ87_18685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446443.1"
                     /translation="MLALSGSDLTVFNQTERLVIELADAMADTPSNISDDLYARLRET
                     FSEEQLLQLGAQVAFENYRARLNRVFNVGSDDLYHPGS"
     gene            complement(1739..>1931)
                     /locus_tag="VIJ87_18690"
     CDS             complement(1739..>1931)
                     /locus_tag="VIJ87_18690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446444.1"
                     /translation="WFYSAMRKMFGKDLTPVKQQMRVPGIVWGGIAMEAGMGRKRKVS
                     LRFIQLAKVRTAWRIGCPF"
BASE COUNT          504 a          500 c          470 g          457 t
ORIGIN      
        1 cagcattgaa ggaaaaaaag ttcgagagat tcggcgtctc gggaaacgaa tttgctggcg
       61 gttcgatgga gaactctggc ttgttcttca cttaatgata gccggcaggt tgcactggta
      121 tgaggatcgg gcaaaagcca tgaaagcacg cgggcttgca gtgtttgagt tcgagaacgg
      181 gagcctggtt ctaactgaag caggaacaca aaaacgtgct tcggttcacc tcgttgaagg
      241 caatgagggt ttgacgaaac ttgatcccgg cggccttgaa gtttttgaag caactctcga
      301 taagttcacc acaacccttc agcgaaagaa ccacacgttg aaacgcgccc ttactgatcc
      361 gcgaatcttt agtgggatcg gcaacgccta ctcggatgaa atcttgtttg aagcgaagct
      421 gtctccgttt gcactcactc aaaagctcat gcctgacgaa atcgaaggac tcttcgccgc
      481 aatcaagaag tgtctgacta cttgggttga acgttttcgc gctgaaacaa ctgataaatt
      541 tccaggcaaa gtcaccgcct tcagacctga gatggcaacc cacggcaagt acaaagaacc
      601 gtgccctcgt tgtggcagca agattcaaag gattcgttac gccgcaaacg aaacaaacta
      661 ttgcccgact tgtcagacag gaggaaagct gttggcagat cgggcgctgt cgcaattact
      721 gaagaaggat tggccacgtt cgccggaaga gttggagatg atgctgcggg acaagtgatg
      781 tctgatgtgc tgatgtccga tatgctttag cttgtcgctg actgtcggaa gttaagcctc
      841 cgatttacac agacgaacgc gggtaagaca agagatcaga attggcaatg tcttattctt
      901 atctgcgtaa tcggcggctg aacttctgcg agtcaacgac aaactaaagt ttatcggaca
      961 tcttctccaa tcgctgcgat cgttcctttg gttactcgca gataatcgtc aggcttgagc
     1021 agtatttgca gtcccctcgt accagccgat accgacacca cgtcaaacaa ctcgatcgtc
     1081 tcgtcaacat aaacgggata atctttcttt ccagcaaacg ccgtcactcc tccacgaatg
     1141 taaccggtca gcgataacaa ctccttcatg gcaacgagat gaatcttgcg atcaccggag
     1201 gcgttagcca gggccttcaa attgacttcg gtatcgccgg gaataacggc aatacaaata
     1261 ccattgcgat cgccacgagc aacgagggtt ttgaaaacct gctcagcagg caacccaact
     1321 ttcgccgcca ctgattcagc agttaaatcg tccaggtcaa cctcgtactc gcgcagctcg
     1381 tagttaatcc ccatttgatc cagcaaccga actgcgtttg tcttttgcgg catgctgctc
     1441 aggatccagg atggtacaag tcgtcgctgc caacattgaa cacacgattc aggcgcgcac
     1501 gatagttctc aaaggctacc tgtgctccca actgaagtaa ttgttcttcg gaaaacgttt
     1561 cgcgaagacg cgcatataaa tcgtccgaaa tgttcgaagg cgtatcggcc atggcatcgg
     1621 caagttcaat taccaggcgc tcagtttgat tgaagaccgt caagtcactt ccggatagtg
     1681 ctaacaactt ttcatcggtg agtcccgctt ttctgccaac ggcagaattg atgtcgactc
     1741 aaaacggaca tccgattcgc cacgcagtac gcactttggc aagttgaatg aagcgcagcg
     1801 acacctttcg tttgcgcccc atgcccgctt ccatcgcgat gccgccccaa actattcccg
     1861 gaacgcgcat ctgttgtttt acgggagtca gatccttgcc aaacatcttg cgcattgctg
     1921 aatagaacca g
//
LOCUS       DATCGC010001962         2936 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_95553, whole genome shotgun sequence.
ACCESSION   DATCGC010001962 DATCGC010000000
VERSION     DATCGC010001962.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2936)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2936)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2936
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95553"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2936)
                     /locus_tag="VIJ87_18695"
     CDS             complement(<1..>2936)
                     /locus_tag="VIJ87_18695"
                     /inference="COORDINATES: protein motif:HMM:NF017773.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY5446445.1"
                     /translation="SNFTEFQRGTDPHDFYNGTPPLLAIYAGGDQRGDPGTLLPVPIS
                     VVVNTYNTYNAPVTFSVVQGHALLAPDNTGRSMPQSSLSVRSIGRAIGVYGSSYVAQV
                     WVYLPSIANEVSVIRAAAVSGANVVSVDTTAVTIDSSLSPPASFEATPTSATTVEIRW
                     AVSTSTTTLQASTNGGATWSNVAVVGPGVSRVIVTGLQPNVSVSFRSFSGGENPTITV
                     DGGTVAIPGSAASQAGGGGSSATASLAVTPLNHPVIEGEEKSFHLGAVGFGGFTRSGY
                     LYLTKTAVLSYDPDNYTIFVDTIDPFTGHLTSQPPRVIGRGGSFFYLGEPNTGEVTKS
                     DTLKVTESLPNDVDDNGNPVHKVLTVTLSDRNDETLLRQNAEGRIPAFENKFTEGSEY
                     ADFYVDNNGYEIIRLQYRWKVNADPNLTVTWDVQFTPYDGGPLHHEIHQWVTQGASAD
                     PSAPYLIDPRYQRAGRNGYYDVILLQTNLAVDGNRDGQMSFDDPFVRDADKTTSDKPY
                     RFWLNDDDDTAFDYNNETGRQIGPREEEQIPPAYPDYSLHHINSKRNLEDFARLWIDL
                     SGATDALEWGMQIGLKWRNVTGAPAINIYPSADGDGSYGYLTDDAAAGDQIAGVFNDA
                     VRDKNDKQTVDANGIFIFKSDYWNDLSDDNPKKCLLFEGASEGKGELTIVFLDQNGNE
                     LAEGGSVWLDLKNIKDMYERAKAQPENIVAPYDLNPPFTGPVNYVPDPNGHEFQKPWD
                     QSEQCVVFVHGWNMSYDDYISFSEIMFKRLWQQGYKGHFAAFRWDTRKSDGPFDTGEY
                     NWSENRAFVYGTALNSLVTNLSGSYTVSIVGHSMGNIVCGEALRQGMRVRNYLLMEAA
                     IPMSCYDTNAPQLATLVTQDQSYHTPAYHVDPADNQLTLGYGGYLNAVTGTLTNFFNP
                     DDWALATGTTLGKNTNWEANQEDYKPDGEVVGAVHDAAWSYQYDPTYPLNQRAWVLSG
                     EYRHVT"
BASE COUNT          683 a          776 c          734 g          743 t
ORIGIN      
        1 ggttacgtgt ctgtactccc cagaaaggac ccatgccctt tggttgagtg gatatgttgg
       61 gtcgtactgg taagaccaag cagcatcgtg aaccgctcct acaacctcac catccggttt
      121 gtagtcttcc tgatttgctt cccaatttgt atttttgcct aacgtcgttc ccgtcgctag
      181 tgcccaatca tcggggttga agaaatttgt cagcgtgccg gtcaccgcgt tgagataacc
      241 gccatagcca agtgttagct gattatcagc cggatcgacg tgataggccg gcgtgtggta
      301 ggactgatcc tgagttacaa gcgtcgccaa ctgcggagca ttcgtatcat agcaactcat
      361 gggaatcgct gcctccataa ggaggtagtt tcttacccgc atcccctgcc gcagcgcctc
      421 gccgcagacg atgttaccca tgctgtggcc aacgatgctg actgtgtagc tgccggaaag
      481 gttcgtgacc aaactgttta gggccgttcc atacacaaag gcgcgattct cactccagtt
      541 gtattcgccg gtatcgaatg gcccatccga tttgcgagtg tcccatcgga acgcggcaaa
      601 gtggcctttg tatccttgtt gccaaagacg cttaaacatg atttcgctga agctgatata
      661 atcgtcgtag ctcatattcc agccatggac gaagaccaca cattgctcgc tctggtccca
      721 tggcttttga aattcgtgtc cattaggatc gggcacgtaa ttcacaggac cggtaaacgg
      781 cgggtttaaa tcgtagggtg cgacaatgtt ctcaggctgc gccttggctc gctcatacat
      841 gtctttgatg ttcttcagat ccagccaaac gctgccgcct tcggcgagct cattgccgtt
      901 ttgatccaaa aagacgattg ttagttcacc tttcccttca cttgctcctt cgaagagcaa
      961 acatttcttc ggattatcgt ctgataaatc attccaataa tcagacttga agataaatat
     1021 gccgttggca tcaaccgttt gtttgtcgtt tttgtcccga acggcgtcat tgaaaactcc
     1081 ggcgatctga tctcctgcgg ctgcatcatc ggtcaggtaa ccataggaac cgtcaccatc
     1141 ggcggatgga tagatattaa tggcaggcgc accggtcacg ttcctccact ttaaaccaat
     1201 ctgcattccc cactcgagcg catccgtagc tccgctcagg tcgatccata accgggcgaa
     1261 atcttcaagg ttacgcttcg aattaatatg atgaagcgag taatcgggat acgcgggagg
     1321 aatttgctcc tcttctcttg ggccgatctg ccgtcccgtt tcattgttat agtcgaatgc
     1381 cgtatcgtca tcatcattca accagaaccg gtaaggctta tcgctggttg tcttgtcggc
     1441 gtcgcgtacg aatggatcgt cgaaactcat ttgaccgtcc cgattgccat cgacggcaag
     1501 attggtctgc aaaagaatca cgtcgtagta accgtttctg ccggcacgct ggtagcgcgg
     1561 atcgatcaga tatggagccg atggatctgc tgaagcgcct tgcgtcaccc attgatgaat
     1621 ctcatgatga agaggccctc catcataggg cgtaaattga acatcccaag taactgtcag
     1681 attggggtcg gcgttcactt tccagcggta ttgcaaccgg atgatttcgt agccgttatt
     1741 gtccacatag aagtcggcgt attcggagcc ctcggtaaac ttgttttcaa aagcaggaat
     1801 cctgccctca gcgttctgac gcaaaagagt ctcgtcattt ctgtctgaaa gcgtgacggt
     1861 gagtaccttg tgcactggat tgccgttgtc atccacgtca ttgggcaagc tttcggttac
     1921 cttgagcgta tccgatttgg tcacttcacc ggtgttcggc tccccgagat agaagaagct
     1981 cccgccgcga ccgatcactc gcggtggctg agaagttaaa tgcccggtaa acggatcaat
     2041 cgtgtcaacg aatattgtat agttgtcagg atcgtagctt aagacggcag tcttggttaa
     2101 atacaagtac ccgcttcgcg tgaagcctcc gaaaccaacc gctcccaggt gaaaactttt
     2161 ttcctcgcct tctatgactg gatgattcag tggagtaaca gcaagcgacg cagtcgcaga
     2221 tgaaccaccg ccgccagctt gactcgcagc actgcccgga attgcaacgg tacctccatc
     2281 gactgtgatc gtgggatttt cgcctccaga aaaggaacga aaactcaccg agacgttcgg
     2341 ttgaagacct gtgacgatta ccctgcttac tccgggccca actactgcta cattgctcca
     2401 agtcgcccct ccgttagtac tagcttgcaa cgttgtagtt gaggtggaca cagcccagcg
     2461 aatctctact gtcgtcgcgg aagtcggagt agcttcaaag cttgcaggtg gtgagagtga
     2521 agaatcaatc gtcaccgccg tcgtatcgac agagactacg tttgccccac tcacagcggc
     2581 tgctcgaatc acgctcacct cattcgctat cgaaggaagg tagacccata cctgagccac
     2641 ataactggaa ccataaacgc cgatcgcacg gccgatagat ctaacggaaa ggctagactg
     2701 tggcattgat cgaccagtgt tatcaggagc gagtaatgcg tgtccctgga cgacactaaa
     2761 agtcactggt gcgttgtaag tattataggt gttaactact actgagattg gcaccggcag
     2821 caaagttcca ggatcaccgc gctgatcgcc gccggcgtaa atcgccaata aaggaggtgt
     2881 cccgttgtag aaatcgtgcg gatcggtgcc cctttggaac tctgtgaaat tcgaga
//
LOCUS       DATCGC010001963         1016 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_259766, whole genome shotgun sequence.
ACCESSION   DATCGC010001963 DATCGC010000000
VERSION     DATCGC010001963.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1016)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1016)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1016
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259766"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(225..>1016)
                     /locus_tag="VIJ87_18700"
     CDS             complement(225..>1016)
                     /locus_tag="VIJ87_18700"
                     /inference="COORDINATES: protein motif:HMM:NF045341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446446.1"
                     /translation="DTEITHALFTRVIDASKLLNLDAEFREKLIAARARLLPPRIGKH
                     GQLMEWMEDYDEPDPGHRHISHLFALHPDNQITLRGAPELAKAARVSLERRLKSGSGH
                     TGWSRAWIINFWARLEESDLAHENLVALLAKSTLPNLFDNHPPFQIDGNFGGTAAVAE
                     MLLQSHAGEISFLPALPKAWATGSIRGLRARGAIEVDLTWQDGKALAVALRPERKDEH
                     KLRVPKGQVIKAVTTSGRRVAFTHEADGTILLKVVPRLEYRITFG"
BASE COUNT          243 a          283 c          250 g          240 t
ORIGIN      
        1 ccagccggaa gagctgacag gcaatacgct gagggcgaga ctgctgcaga aaattgaggc
       61 gaaccttgag gagtacaaag aatcgatttg aagttgtacc gagtagcaac gtagtcagta
      121 ccactacgcg gtagcgtgtg gcttgtcggt caacatgagc atgcgtgatc tcaagtaagc
      181 cacacgctac cgcgtagtgg tactgactac agagacgtta tgagttaccc aaacgtaatt
      241 cgatactcca acctcggaac tactttcaat agtattgtcc catccgcctc atgagtgaaa
      301 gccactcttc ttccacttgt agtcactgct ttgattacct gaccttttgg cacgcgcaat
      361 ttatgttcgt ctttgcgctc cggtctcagc gcaactgcga gcgccttacc atcttgccaa
      421 gtcagatcaa cttcaattgc cccgcgcgca cgcaatcctc ttatcgagcc cgtggcccac
      481 gcctttggca acgccggaag aaaactgatc tcacctgcat gactctgcaa caacatctcc
      541 gcaaccgccg cggtcccgcc aaagtttcca tcaatctgaa acggcggatg attgtcgaat
      601 aagtttggca atgtcgactt cgctaacaac gcaaccaggt tttcgtgtgc gagatcgctt
      661 tcttcaaggc gcgcccagaa gttgatgatc catgcacgac tccaacctgt gtgaccactg
      721 cccgatttga gtcgacgctc aagcgaaacg cgcgccgcct ttgcaagctc gggcgcgcct
      781 cgcagtgtga tttgattgtc tgggtgcaag gcgaagagat gtgagatgtg acggtgacca
      841 ggatcaggtt cgtcgtagtc ttccatccat tccatcaact gtccgtgctt accgatcctg
      901 ggtggcagaa gacgagcgcg agctgcgatc aacttttcac gaaactccgc atcgagattc
      961 agcaacttgc ttgcatcaat cacgcgagta aagagcgcat gtgtaatttc cgtgtc
//
LOCUS       DATCGC010001964         1412 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_227730, whole genome shotgun sequence.
ACCESSION   DATCGC010001964 DATCGC010000000
VERSION     DATCGC010001964.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1412)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1412)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1412
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227730"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1412)
                     /locus_tag="VIJ87_18705"
     rRNA            complement(<1..>1412)
                     /locus_tag="VIJ87_18705"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          279 a          418 c          321 g          394 t
ORIGIN      
        1 actacaagtt cgctgtgtct ctcgttaaga cagctcccag atcgttacgc cattcgtgca
       61 ggtcggaact tacccgacaa ggaatttcgc taccttagga ccgttatagt tacggccgcc
      121 attcactggg gcttcgattc gcagcttcgc cttgcggctg accactcctc ttaaccttcc
      181 agcattgggc aggcgtcagc ccccatacgt cgtcttcacg actttgcgga gacctgtgtt
      241 tttagtaaac agtcgcctgg gacatttctc tgcgaccacc cgcaggtggc tacccttctc
      301 ccgaagttac gggtacattt tgccgagttc ctgaacgaga gttctcacaa gcgccttagg
      361 attctcgccc cacctacctg tgtcggtttg cggtacggtc agatcacagt tggagccgcc
      421 cgaggatttt cttggcagct ggggtcatgt gacttttttc ggattttact cctactttcg
      481 tccccgtcct tacccttaat gtcacccgga tttaccaaag tgacgggcta tgacggctca
      541 accggatatc catcaccggt ctcacctacc ctactgcgtc cccccacggc actgctactg
      601 gttccggaat tttaaccgga tttccatcga ctacgccttt cggcctcgcc ttaggtaccg
      661 acttaccctg agcagattaa ctttactcag gaaaccttag gtttacggcg cgcggggttc
      721 tcgcccgcgt tatcgctact tatgccgaca gagtcgtttc cgatcgctcc aacggtcctt
      781 tcggtcccgc ttcacagcta cggaatgctc gcctaccaac ttgagatctc agatctacga
      841 tctcgaagtg agattgcgat ctgctcagag ctgtgcgctc tgaagacggc gatcttcttc
      901 gttatctctc taaatcaatt cgaatttgaa attcgagact tgaaatcgca gagttgagat
      961 ctcaaattcc gaagcttcgg tgtgtagttt aagccccgtt atattgtcgg cgcagggctg
     1021 cttgaccagt gagctattac gctttcttta aaggatggct gcttctaagc caacctcctg
     1081 gctgtcagtg cttccccact tccttttcca cttaactatg atttagggac cttagttgtc
     1141 ggtctgggct gtttccctct cgaccacgga gcttagcccc cgtagtctga ctcccggata
     1201 tacattcaac ggcattcgga gtttgattgg gttcggtaac cttgtgaggc ccctagccca
     1261 ttcagtgctc taccaccgtg acgattcgtc cgaggctagc cctaaagcta tttcggcgag
     1321 aacgagctat cacgaaattt gattagcctt tcacccctaa gcacaggtca tccaaacggt
     1381 tttcaaccca tactggttcg gccctccacg tg
//
LOCUS       DATCGC010001965         1534 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_493353, whole genome shotgun sequence.
ACCESSION   DATCGC010001965 DATCGC010000000
VERSION     DATCGC010001965.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1534
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_493353"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(329..559)
                     /locus_tag="VIJ87_18710"
     CDS             complement(329..559)
                     /locus_tag="VIJ87_18710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446447.1"
                     /translation="MAISDFKLQIGLDSWGADRVASKVGKSRSGAARLYKEGYDSLLK
                     TDEPSFFADPASFEIYETVGGKVKIWGAREDQ"
     gene            809..1318
                     /locus_tag="VIJ87_18715"
     CDS             809..1318
                     /locus_tag="VIJ87_18715"
                     /inference="COORDINATES: protein motif:HMM:NF014244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HEY5446448.1"
                     /translation="MALPFLNFILSFLIALILHELGHLTAAQISGVRVTALGLGWGPK
                     LYRRTLNNVEFQLRLLPLGAFVQMDMNTFRQRSLNKQLFVLSAGIAVNLLLAMLTWGS
                     LFGVLNLGLAIGNSLPLYQQDGWKGAIVICRSLLGRTSPIVEWSVTITGGVMALVVVT
                     RALLTISGN"
     gene            1324..>1534
                     /locus_tag="VIJ87_18720"
     CDS             1324..>1534
                     /locus_tag="VIJ87_18720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446449.1"
                     /translation="MKVLDETLEERLESKLTRVYVALAMSREVAERNVRVNYDDQSSR
                     SIVTLLNVASGMLEEILVNDTVPIEG"
BASE COUNT          378 a          360 c          361 g          435 t
ORIGIN      
        1 cctggactgg aactctggaa ctgtatagtg attggtgttt cctatgttta taggcaatat
       61 cgtttgccaa gtggacacca atttggctct gacgatttat gattcccagg cgtttcggaa
      121 actttagttt tcgtctggca ctttccaggt taggagttag gcggtaaaaa gcatgaagtc
      181 gtcatttcta acgtacgtcc tcgcagcact cctttcacta gcttgtaatc aggcgctcca
      241 aggtcagcag cgaccaactg aagcgccgct aaccaacgcc tcggtcgtca aactttccaa
      301 agctgggttc aaagagaaga ccataatttc actgatcttc gcgcgctccc caaattttga
      361 cctttccgcc gaccgtctca tagatctcaa aagaagcggg gtcagcgaaa aaggagggct
      421 catcggtttt tagtaaagaa tcgtagccct ccttgtacag tcgggctgcc cccgagcggc
      481 tcttaccgac ttttgaggct acacggtctg caccccaact atccaagcca atctgcaatt
      541 tgaaatctga aatcgccaat tcattaatcc tcttattcag ttaacaaatt aggtcactta
      601 aggaagttac atgctgatta tccggctgta tagctctgct tactctaatt ttttttcgca
      661 cttagctttg atactggaag tagcggaatt ctacaggcga tcgtcgttac ttgtgcctcg
      721 gttcctgatt ctagacatac gaaacgatgt cgaagacata atgcgccttg aggctcaatc
      781 gctgcactga cgactggagc ttaagaaaat ggcattgccc ttcctcaact ttattcttag
      841 ctttttgata gcactgattc tccacgagtt agggcacctg actgccgcac agatttccgg
      901 tgttcgcgtt actgcccttg gtttgggctg gggtcccaaa ctctatcgac gaacactcaa
      961 taacgtcgag tttcagcttc gccttttacc acttggtgcc tttgttcaaa tggacatgaa
     1021 tacgtttcgg cagcgatcac ttaataaaca gttgttcgtt cttagtgccg gaattgcggt
     1081 caacttacta ctggccatgc tgacgtgggg aagcttgttt ggagttctaa atctagggtt
     1141 agcaattgga aattcccttc ccctctatca acaagacggt tggaagggtg cgattgttat
     1201 ttgccgaagc ttgctggggc gaacgagtcc aatagtcgaa tggagcgtca cgataactgg
     1261 aggagtcatg gcccttgtgg tcgtaactcg agcactgctt acgatcagcg gaaattaata
     1321 cgaatgaaag tattagacga aacattggaa gaacgactcg agagcaagct cacgcgtgtt
     1381 tacgttgctc tcgcgatgtc gcgagaagtt gccgagcgaa atgttcgtgt gaattacgat
     1441 gatcaatcgt ctcgatcgat tgttaccttg ttgaatgtag cttccggaat gttggaagaa
     1501 attctcgtta acgacacggt tccaatcgaa ggtg
//
LOCUS       DATCGC010001966         1087 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_329779, whole genome shotgun sequence.
ACCESSION   DATCGC010001966 DATCGC010000000
VERSION     DATCGC010001966.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1087
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_329779"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            452..694
                     /locus_tag="VIJ87_18725"
     CDS             452..694
                     /locus_tag="VIJ87_18725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446450.1"
                     /translation="MDWEYKAKRLLGSRTIHVEGDGPFAVVTPCGKRAFSLWVTRAEA
                     ERAINGILSCGGDCLGVASHYIVDLGERTKVHSSAA"
BASE COUNT          255 a          273 c          294 g          265 t
ORIGIN      
        1 tggataatgg agccagtgcc gccgctgccc cgttggccac tgttggaata ccctatgatc
       61 atcacgacgg ctggcgagct gcgctcatag atctcacgtg gcgtaagatc tcccgccaga
      121 gcggctccag gccacaatcc catgactgtc gctattccga gtagcaggag tctttccata
      181 ttgccttcat ctctaaccgg gccttagctc ggttgaatta tcaatcatac ccctcgccgc
      241 ttccgccggc aagacttcgg cccgtgttgt ggggcggggg aaaagacact tccactgagg
      301 cggcgaggag ataggtagtg ccaacccttc cagattccag ccagcttcag cggtgagacc
      361 atgtcacaca accttgatcg agtttctatc tgtctgtaat gcacaactgc caggcttgat
      421 gcaaaatggt ttgcagcata agaggttcac aatggattgg gaatacaaag cgaagcggtt
      481 gctcggtagt cggactatcc atgtcgaagg ggatggacca tttgccgtcg tcacgccctg
      541 cggaaagcgt gcattctctc tgtgggtcac aagagcagaa gcggagcgag ctataaacgg
      601 tatcttgtcc tgtggaggcg attgtcttgg tgttgcctct cattacattg ttgatctcgg
      661 agagcgcaca aaagtccatt cctcggcagc gtgatacaag taggaacagc cagttgtgag
      721 gcaggccttg gtcggtgaag ccctcgttct ccatatgatg aacaaggaaa agaattgccc
      781 gaagtgtaaa aagtactact ggatccatca actgagtctg gatcatgact gcagaatgcg
      841 ccggactgtc ttgttcaatg agatatgaaa ggggtcagtg agctgaagtt gtccgatagg
      901 agttgaataa aggtgtccac cagaactctc accgccgggc agatggacag gggttcagct
      961 acagcgacgc agccactgac ggtattctta tcttgtaact tcttctaatg ttcgacctac
     1021 tatgttcatt gcttcgtgaa gtcgtgcttt catatatgga tcgtgccgca cgagatcatc
     1081 ggcttcc
//
LOCUS       DATCGC010001967         1736 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_461115, whole genome shotgun sequence.
ACCESSION   DATCGC010001967 DATCGC010000000
VERSION     DATCGC010001967.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1736)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1736)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1736
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_461115"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..684)
                     /locus_tag="VIJ87_18730"
     CDS             complement(<1..684)
                     /locus_tag="VIJ87_18730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446451.1"
                     /translation="MLVWDEVGTRYYETGVSKAIFFPIDGSTGVPWNGLVSVSIDPSG
                     GESEHYFFDGIKYMDRVLAEDFQGTVQALSTPREFEACEGVKSIQNGLKTHFNKRDKF
                     HMAWRTEIGSDSGQSVGYKIHIAYNCLVQPSARSYQTISDNTTPDLRSFVITTTPACG
                     RDSYFTYDSREGDLSALEARLYAGDLPKCWELSGLGLPPGGGGGGGSTDPDLGCAKLI
                     EDFESFIPGQ"
     gene            complement(696..1235)
                     /locus_tag="VIJ87_18735"
     CDS             complement(696..1235)
                     /locus_tag="VIJ87_18735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446452.1"
                     /translation="MLKLKVILSEKFNEETNRIVVETIDIELEHSLASLSKWEEKWKI
                     PLLSTQDKTEEMNIDYLMCMCLTPDVTPEILYKLTEEQQTQISDYLETKHTATWFSNQ
                     PQARSGETITAELIYFWMSSFNINWESQYWNLSRLLTLIQVFSVKQDNKPTPQSRRNR
                     QMDIARINAQRRAELGSKG"
     gene            complement(1258..>1736)
                     /locus_tag="VIJ87_18740"
     CDS             complement(1258..>1736)
                     /locus_tag="VIJ87_18740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446453.1"
                     /translation="FATVNDSPEMTALSWEFESNPVSFVEDEYSDLKPTSLLTIDSTS
                     PLVDQALLADLLDIVQGTDVDDPRMPTPDEVLAAMGGTGLTDVDLVEETNQPTYDGST
                     HVVTLPTVTGVQWKINGVNKAPGAQPALTAGQTATVTAVATSGNNIVGDDTWTFKY"
BASE COUNT          410 a          447 c          436 g          443 t
ORIGIN      
        1 ctgtcccgga atgaagctct caaaatcttc aataagcttt gcgcaaccaa gatcaggatc
       61 tgttgatcct ccaccaccgc ctcctcctgg aggaagtccc agtcccgaaa gttcccaaca
      121 cttggggaga tctcccgcat aaagacgagc ttcgagagcg gaaagatctc cttctcgaga
      181 gtcatatgtg aaatatgaat ctcttccaca agcaggcgtt gttgtaataa cgaacgatcg
      241 aagatctggt gtggtgttgt ctgaaatcgt ttgataacta cgtgcagaag gctgaacaag
      301 acaattgtaa gcgatgtgaa tcttatagcc aaccgactga ccagagtcac taccaatttc
      361 agtacgccaa gccatgtgga acttgtcccg cttgttgaag tgtgttttca aaccgttttg
      421 gatgctctta actccctcgc aagcttcaaa ttcacgagga gtagaaagtg cctgaaccgt
      481 cccttgaaag tcctcggcaa gtacacgatc catgtacttg ataccgtcga agaagtagtg
      541 ttcggattcc ccgcctgaag gatctataga tactgaaacc aatccattcc acggaacgcc
      601 tgtcgaacca tcgatcggaa agaagatggc cttagagaca ccggtttcgt agtaacgagt
      661 ccctacttcg tcccaaacca acatgatgcc tcctctcagc ccttggaacc caactcagcg
      721 cgccgctgag cattgatacg tgcgatgtcc atctgacgat tgcgacgact ctgaggcgtc
      781 ggcttgttat cttgcttaac actgaagacc tgaatcagtg ttaaaagtct gctgagattc
      841 cagtattgcg attcccaatt gatgttgaaa ctgctcatcc agaagtagat aagttcggct
      901 gtaattgttt ctccacttcg agcttggggc tgattactga accatgtagc tgtgtgtttc
      961 gtctcgagat agtccgaaat ttgagtttgt tgctcctcag ttagtttgta gagaatctcc
     1021 ggagtcacat caggagtcaa acacatacac atgaggtagt caatgttcat ttcttctgtc
     1081 ttgtcttgcg ttgacaaaag gggaattttc catttctctt cccattttga cagagaagcc
     1141 agagaatgct ctagctcaat gtcgatagtc tcaacgacga ttcgatttgt ctcttcgttg
     1201 aacttttccg acagaattac cttgagtttg agcattctct ggcctccctt ctagctgtca
     1261 gtacttgaac gtccaggtgt cgtcgccgac aatgttgttg ccggacgtag caaccgccgt
     1321 gacggtagcc gtctgaccag cggtcagagc aggctgagca ccaggtgcct tgttgacacc
     1381 gttgatcttc cactgaacac cagtgaccgt cggcagagtg accacgtggg tcgacccgtc
     1441 gtatgtcggc tggttggtct cctcgaccaa gtcgacatcg gtcagaccgg tgccgcccat
     1501 ggccgcaaga acctcgtcgg gggtgggcat acgcggatcg tccacgtcgg tgccctggac
     1561 gatgtccagc agatcggcca gaagtgcctg gtcgaccagt gggctggtgc tgtcgatcgt
     1621 gagaagcgag gtcggcttga ggtccgagta ctcgtcttcg acgaaagaca ccgggttgga
     1681 ctcgaactcc cagctgaggg ccgtcatctc ggggctgtcg ttcaccgtag cgaagg
//
LOCUS       DATCGC010001968         1350 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_61720, whole genome shotgun sequence.
ACCESSION   DATCGC010001968 DATCGC010000000
VERSION     DATCGC010001968.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1350)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1350)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1350
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61720"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1184)
                     /locus_tag="VIJ87_18745"
     CDS             complement(<1..1184)
                     /locus_tag="VIJ87_18745"
                     /inference="COORDINATES: protein motif:HMM:NF019344.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY5446454.1"
                     /translation="MLAEMDITTINDMNNMGTVFLDPDQKSPRAQDFEERLTSRIVGQ
                     ERAVRRMSGLYQIFLAGMNPPNRPIGTMLFLGPTGSGKTRVIEAAAEVLYGDPNAIVK
                     IDCAEFQHSHEIAKLIGSPPGYLGHRETSPMLTQENLDRMHTDDMKVSLVLFDEIEKA
                     SDSLWQLLLGILDKATLTLGDNRRVDFSKAMVIMTSNLGAREMSELISGGIGFAPGKG
                     MKSPNDTEVDQKIYRTAVEAARRKFSPEFMNRIDKVVVFRSLKEHHLRQILDLELQAV
                     QDRIMQSAGTKFVFQCSDTAKDMLMKEGIDFKYGARHLKRAVERFLVYPLSNLVATGQ
                     IGLGDLVHVDVDGIKNRLIFSKSSGGALIHEMTAKDSKPDDSTESLSGGVGVPIPQAT
                     KVA"
BASE COUNT          326 a          359 c          332 g          333 t
ORIGIN      
        1 gccactttgg tcgcttgagg tatcggtacg ccaacgccgc ccgagagcga ttcagtcgaa
       61 tcgtctggct tcgagtcctt cgctgtcatc tcgtgaatca aagcgcctcc ggaactcttc
      121 gagaagatca accggttctt aatcccgtca acgtcaacat gcaccaagtc acccaacccg
      181 atttgcccgg tggcaaccag gttcgacaac ggataaacga ggaatcgttc gacggccctc
      241 ttcaagtgac gagcgccata cttgaagtcg ataccttcct tcatcaacat gtctttcgct
      301 gtgtcagaac attggaagac gaacttggtg ccggccgact gcatgatgcg atcttgaaca
      361 gcctgaagtt cgagatccaa aatctggcga aggtgatgct cctttagaga acggaatacc
      421 acaaccttat cgatgcggtt catgaactcc ggcgaaaact tacgtcgcgc agcttcaacc
      481 gccgtgcgat agatcttctg atcaacttct gtgtcgttag gagacttcat tcctttgccg
      541 ggagcgaaac caataccgcc ggagatcagt tctgacatct cacgagcgcc aaggttcgag
      601 gtcatgatga ccatcgcctt agagaagtcg actcgtctat tgtcgcccaa cgtcaaggtg
      661 gccttgtcga ggataccgag caataactgc cagagactgt ccgaagcttt ctcgatttcg
      721 tcaaacaaca cgagcgatac tttcatatcg tctgtgtgca tacgatcgag attctcctgt
      781 gtcagcatcg gagaagtttc acgatggccg agatatccag gaggtgagcc aatcagcttg
      841 gcaatttcgt gtgaatgctg aaattcagcg cagtcgatct ttactatggc gtttggatcg
      901 ccataaagaa cttctgccgc tgcttcaatg acacgcgttt ttccggaacc ggttggtccg
      961 aggaaaagca tggtgccgat tggtctgttg ggagggttca tcccagccaa aaagatctgg
     1021 tacaaaccgc tcatgcgtct gaccgcacgt tcttgaccga cgatgcgaga agtaagccgc
     1081 tcttcgaagt cttgagcgcg agggctcttt tgatctggat cgaggaaaac cgtacccata
     1141 ttgttcatgt cgttgatagt tgttatgtcc atctcggcta acatcggcgt tctccttgcg
     1201 agttcgcatc ggggcaattt caaaattggg cccacattta ccggcccaat tcttctacta
     1261 agcaaggaac gatccgctag ctgaattgat gcgttcaaaa cgaacggcgt ttgccatcta
     1321 caacgattcg accggcaaca ccgtcaagct
//
LOCUS       DATCGC010001969         1811 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_259830, whole genome shotgun sequence.
ACCESSION   DATCGC010001969 DATCGC010000000
VERSION     DATCGC010001969.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1811)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1811)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1811
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259830"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..768
                     /locus_tag="VIJ87_18750"
     CDS             <1..768
                     /locus_tag="VIJ87_18750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446455.1"
                     /translation="RFLTVFLFISLVSSFSGGSHAATNPIQQEQESVKALTNQDIVTL
                     VKSGLSAEVISAKLQRSGCTCDISSPELLRLKAEGVADEILFAMIKSTKAVSGERIMV
                     TIPRGTVVEIETAYRISSEEIRPGEAISFKVVNPVQVGGNTVIAAGAIATGRVVQASR
                     GGHFGRAGRLAWNLETVNAVDDSRIPIQAPGRIVGDSKGAKVATQVLLTGALLWPIAP
                     VALLHGFKRGGNAYLAQGRRYEVTVSSDTTIKLSSLH"
     gene            865..1521
                     /locus_tag="VIJ87_18755"
     CDS             865..1521
                     /locus_tag="VIJ87_18755"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HEY5446456.1"
                     /translation="MDRIDKKSLAPFVAYLFLFHAAWVAWVYLLFPSVRALGERTLTY
                     ALVSIGVRLLVWVLPVLLYLHFVDHVEPIEYLRLKQRWKRGLQIGLGFTCVNFLLLLI
                     RFGMPNPNAQSITWNNVLSTSLLIGFVEELPYRGFILQKLQERLSFWVANAVSSLLFL
                     AIHLPGWISLHMLSAETFVFVFFFGMLMSIVFRYSDSLWSAIIAHSLNDFLNAVVFHR
                     "
BASE COUNT          400 a          448 c          455 g          508 t
ORIGIN      
        1 cgatttctta cagtgttttt attcatttcg ctggtgagtt cttttagtgg aggatctcac
       61 gctgcaacaa atccgatcca gcaggagcag gagtctgtca aagcccttac taaccaagac
      121 atcgtaacgc tggtcaagtc aggtttgagc gcagaagtca tctcagccaa actgcagcgt
      181 tctggttgca cctgtgacat ctctagcccc gagttgctac gtttgaaggc agaaggggta
      241 gccgacgaaa ttctcttcgc gatgattaag tcgacgaaag ctgtgtcagg cgaacggatc
      301 atggtgacca ttccgcgcgg cacggtagtc gaaatcgaaa ctgcctatag gattagttcg
      361 gaagagattc ggcctggcga agcaataagc ttcaaagtcg tcaatcccgt tcaggttgga
      421 gggaacacag tcatcgctgc gggggcaatt gcgacgggac gagtagtgca agccagcaga
      481 ggaggacatt ttggtcgggc agggcgcttg gcctggaatt tggaaacggt caatgctgtc
      541 gacgactcgc gcattcctat tcaagcaccc ggccgaatag tcggcgatag caaaggtgcg
      601 aaggttgcta cgcaggttct gcttaccggc gctttgcttt ggccaatagc cccggtcgca
      661 ctattacatg gtttcaaacg aggcgggaac gcgtaccttg cgcaaggtcg tcgttacgaa
      721 gtgacagtca gctccgacac gaccatcaaa ttaagtagtc ttcactgact tattcatctg
      781 taagaccctc gaccctcttg ccttgattgg gctctatcag tcgttgtagc tttctctgtt
      841 gagtcgacaa aggcaacaaa ccaattggat cgtatcgaca aaaagtccct tgctccgttc
      901 gtagcctacc tgtttttgtt tcatgcggct tgggttgcct gggtctattt gctctttccg
      961 agtgtaaggg ctttaggcga gcggacgttg acttacgcgc tggtaagtat tggtgttcga
     1021 ttgctcgtct gggtgttacc ggtactccta tatctgcact tcgtcgatca tgttgagcca
     1081 atcgaatact taagactgaa gcaacgttgg aagcgcggtc tgcaaatagg tttgggattc
     1141 acctgcgtga acttcctgct attgctgatt cgtttcggca tgccaaatcc gaacgctcaa
     1201 tcgattacct ggaacaatgt cctcagcaca tcgctgctca ttggcttcgt tgaggagctt
     1261 ccttatcgtg gtttcattct tcaaaagctt caggagcggt tgagcttttg ggttgcgaac
     1321 gcggtctcat cgctgctctt cctagccatc catctgccgg gctggatttc acttcatatg
     1381 ctgagtgccg aaactttcgt cttcgtgttt ttctttggga tgctgatgtc cattgtcttc
     1441 agatactcag attcgctttg gagcgctatc attgcgcata gcttgaacga ctttctcaac
     1501 gcggttgtct tccatcgctg acagttgttt tattcaggaa atttcctcac gtcccgtatt
     1561 ttgcgtctat tgattatgct cagaacttct aagatgctgc gtcgttcctt caacggctcg
     1621 gtcaacttaa cttcaacaat aaaggccaac catcaatttc gattagaaca aaccaccttg
     1681 gtcaacgctt gataacgatg acttctcaag aggccgcggt cctatttccg attgcgactg
     1741 tccaaaggac gaatctcgat ttcatgacat cgcggtatcc acgagctcgt tacaggtgtc
     1801 gtcccactcg g
//
LOCUS       DATCGC010001970         1187 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_392752, whole genome shotgun sequence.
ACCESSION   DATCGC010001970 DATCGC010000000
VERSION     DATCGC010001970.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1187
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_392752"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1187)
                     /locus_tag="VIJ87_18760"
     CDS             complement(<1..>1187)
                     /locus_tag="VIJ87_18760"
                     /inference="COORDINATES: protein motif:HMM:NF012803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEY5446457.1"
                     /translation="SPIASPAAKPDDKKAPTKPVQVVFEDIRRRLSLLPVGIDVNYQT
                     ISPDGKWLAMVASAANQSNLYLYSLDELSREPAVAKQLTSTPGFKSGAQFTPDSKELY
                     FLENGRIGIVNLEGRSRSLAVTAEMDVDFSREKLEVFRQAWSYLRDNFYDPNYHGANW
                     EQVRAEYEPLVAGARTADEVRRLLQLMVGELNASHLGATPPASANSATTGKLGLRFDR
                     RQYETNGKLRITEVVPLGPAAIPGNINVGDYLLAVDGKVIDRLTNLDEVLSYKTARKV
                     SLTVSSTEDGTSKRDVAVRPVSGATERGLLYRSWVERNREYVSKASGGRLGYVHMFDM
                     GSGSLAQLYVDLDVENQARDGVVIDIRNNSGGFVNVYAIDVLARRGYLTMTLRGQSGA
                     PAR"
BASE COUNT          270 a          342 c          292 g          283 t
ORIGIN      
        1 tcgagccggt gctccacttt gtcctcgcag cgtcatcgtc aggtacccgc gacgggccag
       61 gacatcgatc gcatacacat ttacgaagcc cccgctgttg ttgcgaatgt caatgacaac
      121 gccgtcgcgt gcctggttct ccacatcgag atcgacgtac aactgcgcaa gtgatccgga
      181 gcccatatca aacatatgaa cataacctag tcgacctcca ctcgccttcg acacatactc
      241 ccgattgcgc tcgacccagc ttcggtaaag aagcccgcgt tctgtggcgc cactcactgg
      301 acgtacggcc acgtcacgtt tgctagtacc gtcctctgtc gacgacaccg taagagaaac
      361 ttttcgtgcg gtcttgtaac ttaatacttc gtcaagattg gtaagccgat cgataacctt
      421 cccatccacc gccaggaggt agtctccaac gttgatgttt ccaggaatag cagccggacc
      481 gaggggaaca acttcagtaa tgcgcaactt tccgtttgtc tcgtactgac ggcgatcaaa
      541 acgcaatccg agtttgccgg ttgtggccga gttggcgctc gcaggcggcg tggcgccaag
      601 atgcgatgcg ttcagctcac caaccatcag ttgcagtaaa cgtcgaactt catctgcggt
      661 acgagcgcct gctactaatg gttcgtactc cgctctaacc tgttcccagt tcgcaccgtg
      721 gtagttcgga tcgtagaagt tgtcgcgaag gtaagaccac gcctgcctga atacctcgag
      781 tttctcccga gagaaatcaa catccatttc cgcagtcact gcaagagaac gactgcgtcc
      841 ttcaaggttc acaatcccta ttcggccatt ctcgaggaag tagagttcct tactgtcagg
      901 cgtgaactga gctccggact taaatcctgg cgtcgaggtc aattgcttag ccacggcggg
      961 ctcacgtgag agttcatcaa gtgaatagag gtaaaggttc gactgattag ccgcactcgc
     1021 taccattgcc aaccattttc cgtcgggact tatcgtttga taatttacgt cgatgcctac
     1081 gggaagcaga ctcaatcgcc gtcgaatatc ctcgaaaaca acctgtactg gcttcgttgg
     1141 agctttctta tcatcaggct tggctgccgg cgacgctatt ggcgaag
//
LOCUS       DATCGC010001971         1229 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_295441, whole genome shotgun sequence.
ACCESSION   DATCGC010001971 DATCGC010000000
VERSION     DATCGC010001971.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1229)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1229
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295441"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..497)
                     /locus_tag="VIJ87_18765"
     CDS             complement(<1..497)
                     /locus_tag="VIJ87_18765"
                     /inference="COORDINATES: protein motif:HMM:NF016750.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEY5446458.1"
                     /translation="MGNSDNKQVNASRDETESRNETFYPGPSRIHLAAFPPKERWDDW
                     TELDSQAWPRRKERHYSLVPTTCFNCESACGLLAYIDKATGEIQKFEGNPEHPGSRGR
                     NCAKGPATLNQVTDPDRILYPLKRAGKRGEGKWERTTWSEALNTIAARIRKAILEERR
                     NEIMY"
     gene            complement(534..1085)
                     /locus_tag="VIJ87_18770"
     CDS             complement(534..1085)
                     /locus_tag="VIJ87_18770"
                     /inference="COORDINATES: protein motif:HMM:NF017496.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Uma2 family endonuclease"
                     /protein_id="HEY5446459.1"
                     /translation="MSTKTEATVDDLYRVPEHGKAELVNGELVLMPPTGGVPGRAAGE
                     IYVSLREYERRTGSGYAFPDNVGFIVNLPHRRSFSPDAAFYTGELRGGLFLEGAPIFA
                     VEVRSAEDYGPAAEKLMALKRADYFAAGALVVWDVDVLRKKVVRAFRASDPTEPIIFG
                     SDEVANAEPALPGWTMALSEMLG"
BASE COUNT          263 a          334 c          329 g          303 t
ORIGIN      
        1 tgatacatga tttcgttgcg acgttcttcg aggatagctt tgcgaatgcg cgcggcaatt
       61 gtgttgagcg cttcggacca ggttgttcgc tcccattttc cttcgccgcg tttgcccgcg
      121 cgtttgagtg gataaagaat gcgatcggga tcggttacct ggttgagcgt ggctggacct
      181 tttgcgcagt tgcgaccacg cgagcctgga tgctcgggat tgccttcgaa cttttgaatt
      241 tcgccagtgg ccttgtcgat gtaagccaag agaccgcacg ccgattcgca gttgaagcag
      301 gtagtgggga cgagcgagta gtgacgctct ttccgccgtg gccaagcttg cgagtcgagt
      361 tcggtccagt cgtcccagcg ttctttcgga gggaaggccg cgagatggat gcgggacggg
      421 cccggataga aggtttcgtt ccgcgactct gtctcgtcgc gcgatgcgtt cacttgtttg
      481 ttgtcagaat ttcccatcaa tcagatttca atctgtgtta tccgcggata gatttatccg
      541 agcatctcac tcaaagccat cgtccagcct ggcaacgccg gctcagcgtt cgcaacctcg
      601 tcgctgccaa agatgattgg ctcggtcggg tcgcttgcac gaaaggctcg cacaactttc
      661 ttgcgaagaa cgtctacatc ccaaaccacc aacgctcctg cagcaaagta gtcagctctt
      721 ttcaacgcca ttagtttttc ggcggcaggt ccgtaatctt ctgcgctgcg cacttcaact
      781 gcaaagatgg gtgcgccttc aagaaaaagt ccaccgcgca actcgcccgt atagaaagcc
      841 gcatcgggac tgaaagatct gcggtgagga agattgacta tgaaaccaac gttgtcagga
      901 aatgcgtaac cacttccagt acgtcgttca tactcgcgca agctgacata gatttcgccc
      961 gcagctcgac cgggcacacc tccggttggt ggcatgagga ccaactctcc attcactagt
     1021 tctgctttgc cgtgttcagg gactcggtag aggtcgtcca ctgtggcttc ggttttagtg
     1081 ctcataggaa gaagtacctg aatccatgtt ctctatggat caatgtctcc aagttaacga
     1141 caagacagac gcctatcgga catcacgcca gcggcacgga ctgtcccgct tgtacataag
     1201 cattctcgta aagcatcaag ccaatcaac
//
LOCUS       DATCGC010001972         2129 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_128038, whole genome shotgun sequence.
ACCESSION   DATCGC010001972 DATCGC010000000
VERSION     DATCGC010001972.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2129)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2129)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2129
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128038"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(49..984)
                     /locus_tag="VIJ87_18775"
     CDS             complement(49..984)
                     /locus_tag="VIJ87_18775"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HEY5446460.1"
                     /translation="MTSKGMKITFQLIPLLAMCLVAGRVASAQSDIKGPISGRSGASM
                     TVKVVGSPDVTVLLTPSTKVEESVGLFRHETVNASALVPGLYVQVKATNNDQNQLVAT
                     SVRFNGGDLKAAVDSQAGLAPTNQAVAQNVAQIKQDQAKIAAQQQKIKQQEAQLAAVK
                     AAQAEHDKEIAANKEAIAEANARFGELDEYNILGETTVLFGNGRTEVEPEYRAQLLQL
                     AQKAQGIKGYMIQVKGYASTVGGRALNQRLSMLRARNVTNLMEQQGNIPLTNILSPGA
                     MGTSVEVAPDITEEGQAENRRVVVMILQNKGIAGP"
     gene            complement(1255..1485)
                     /locus_tag="VIJ87_18780"
     CDS             complement(1255..1485)
                     /locus_tag="VIJ87_18780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446461.1"
                     /translation="MKATMKPASSDELSKLPFKESYPTPETSEQLYQALQFQRAVQVY
                     LWALPAMNMVAMRDGQAATFFRPPGHADSVAR"
     gene            complement(1593..>2129)
                     /locus_tag="VIJ87_18785"
     CDS             complement(1593..>2129)
                     /locus_tag="VIJ87_18785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446462.1"
                     /translation="LLAAAGDTTVTERLLKGTTVGDKTFKVHLDGYNQLPYLTGETKE
                     SPRKSLFYFSDDGEVVAVRNGDYKFVLAEQRANSSWVWMEPFVKLRVPKIYHLRRDPF
                     ERADVNANYYWQWEIQHIYMMYEMQDLVGQQIADFAAFPPRQKPASFNLDAVLAQVAG
                     AHGEAAKSAKAATAGAKK"
BASE COUNT          439 a          574 c          519 g          597 t
ORIGIN      
        1 tttcttctca gttataaagt gatccatctc tgtgatccga gaaccacgtc atggaccagc
       61 gataccctta ttctgcagaa tcatcactac cactcgacga ttctcagctt gtccttcttc
      121 cgttatgtct ggcgctacct caacactagt tcccatcgct ccaggagaca gaatattcgt
      181 aagcggaata ttaccctgct gttccataag attcgtgaca ttacgagcac gaagcatact
      241 cagtctctgg ttaagcgcac ggccaccgac tgtcgacgca taccctttga cctgaatcat
      301 gtaacccttg atcccctgcg ccttctgcgc caattgtaaa agctgtgcgc ggtactctgg
      361 ttcaacctcg gtcctgccgt tcccgaacag tactgttgtt tctccgagga tgttgtattc
      421 atccaattca ccaaagcgag cgttagcctc cgcaatcgcc tccttgttcg cggcgatctc
      481 tttgtcatgt tcggcttgcg cggctttcac tgccgcgagt tgagcttcct gttgcttaat
      541 tttttgttgt tgtgcagcaa tctttgcctg gtcttgtttg atctgcgcca cattctgtgc
      601 aactgcctgg ttagtaggcg cgagtcctgc ttgcgagtcg actgccgctt ttagatctcc
      661 accattgaat ctaacgctgg ttgcaaccag ttgattctga tcattgttag tcgccttcac
      721 ttgcacgtaa agcccaggga cgagggcgct cgcgttcaca gtttcatggc gaaacagccc
      781 cacagattcc tccaccttcg ttgagggagt taagagaaca gtgacatccg ggctgcccac
      841 aactttaacg gtcatactgg cgccgcttcg cccactaatt ggtcccttta tatccgattg
      901 agcagaagca actctaccgg ccaccagaca cattgcaagg agcggaatta gttggaacgt
      961 gatcttcatt cccttacttg tcatttcaat ttcctttctt ccgtctaaag cgttcttaca
     1021 gctgacggca gcgcatgcgg tttacaccgg ttcatagaac ggtacgactc atccagtcct
     1081 taccttagac ctattgagcg agcatccccg agacttctca tccctcggaa atattctgtc
     1141 gagtgttcgc tttagcgtag ccggataacg tggtttagtg aactgtcact tatgacagtt
     1201 tgaggtggac attgtggaca gggatgtgac gacgattatt tatttgtcgc cgtgttaacg
     1261 ggcgacacta tcggcatggc cagggggacg aaagaacgtt gccgcctgtc cgtcacgcat
     1321 cgccaccatg ttcatggccg gtagtgccca tagatacact tggacggcgc gttgaaattg
     1381 cagtgcttga tagagctgtt cggaggtttc gggtgtgggg taactctctt tgaaagggag
     1441 cttgctcagt tcatctgagc tggcgggttt cattgttgct ttcatgaatg gcctcagttg
     1501 agtaaccatc tgtaaatgaa tccccggcag atctttggtc tgccggggga cttatccgca
     1561 tagaccatca gtcagtgcgg gttcagtgct gtttacttct tcgcgccagc cgttgcagct
     1621 ttcgcgcttt ttgctgcttc tccgtgtgcg cccgcaactt gcgccagtac ggcatcaagg
     1681 ttgaaggagg cgggtttttg acgcggtggg aacgcagcga agtcagcgat ttgctgcccc
     1741 acaagatcct gcatctcgta catcatatag atgtgctgga tctcccattg ccaatagtaa
     1801 ttggcattga cgtcggccct ttcgaaagga tcacgacgca ggtggtatat cttcggcact
     1861 cgaagcttta caaatggctc catccagacc cacgacgaat ttgcgcgttg ctctgcaagg
     1921 acaaacttgt agtctccgtt tctcacagcg acaacttcgc cgtcatcgct aaagtagaag
     1981 agagacttcc gtgggctttc cttcgtttct cccgtcaggt atggcaactg attgtatcca
     2041 tcaaggtgta ccttgaaggt cttgtcgccc acagtggtgc ccttaagcaa cctttcggtg
     2101 acagtcgtgt cgccggctgc ggctagcaa
//
LOCUS       DATCGC010001973         1110 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_363211, whole genome shotgun sequence.
ACCESSION   DATCGC010001973 DATCGC010000000
VERSION     DATCGC010001973.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1110
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_363211"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..936)
                     /locus_tag="VIJ87_18790"
     CDS             complement(<1..936)
                     /locus_tag="VIJ87_18790"
                     /inference="COORDINATES: protein motif:HMM:NF040264.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5935 domain-containing protein"
                     /protein_id="HEY5446463.1"
                     /translation="MSGTIATVVFALMILGLFWLDRDQNQNSRPSGALWIPVIWWFLA
                     CSRSVGQWLQMVSPIESSGQMESSDQLLEGSPMDRLVYTTLLVLGLIVLVNRRKHVMT
                     LLQGNVPIIIFFLYCAVSILWSDYPEVAFKRWNKALGDLVMVLVVLSDREPLVALERL
                     LARTTFLLVPLSILVIKYYPYLGRGIAKWSYKTFYTGVSLNKNGLGMICLVCGLATVW
                     RLLMTYQDRNGIGRTQRLLAHGAILVMVLWLFWLANSMTSLSCFIIGCILLLAVKFRV
                     VEQNPGVVHYLVAAILTITIPVLFFNFSPGILETLG"
BASE COUNT          320 a          289 c          253 g          248 t
ORIGIN      
        1 tcccaatgtt tccaaaatgc cgggactgaa gttaaaaaac aacacaggga ttgtgatagt
       61 tagtattgcc gcgacaaggt aatgcaccac tcctggattt tgctccacta cccgaaactt
      121 gacagccaag agtaagatgc atccgattat gaagcaggac aaagaggtca tcgaattggc
      181 cagccaaaat aaccacagca ccatcaccag aatggcacca tgggccaata gccgctgagt
      241 gcggccgatg ccattcctgt cttggtaggt catgagcaag cgccatacag ttgcaaggcc
      301 gcacaccaga cagatcatcc ctagaccgtt cttgtttagt gagacacccg tatagaaggt
      361 cttgtaactc cacttcgcaa ttccccttcc gaggtagggg taatatttga taaccaatat
      421 ggaaagaggg actagtagaa aagtcgtccg agcgaggagc cgctccaacg caacgagtgg
      481 ttcacggtca ctcaagacaa ccagaaccat cacaaggtcg cccaaggcct tattccaacg
      541 cttgaatgca acctcaggat agtccgacca gagtatactc accgcgcaat agaggaagaa
      601 tattatgatt ggcacattcc cctgcaagag cgtcatcaca tgctttcttc tgttgacaag
      661 cacgattaac cctaggacca acaaggttgt gtataccagg cgatccatcg gactcccctc
      721 caggagctgg tcggacgatt ccatttgccc ggatgattct atcggtgaca ccatctgtag
      781 ccactgtccg accgatcgtg aacatgcaag gaaccaccag attacaggaa tccaaagagc
      841 tcctgacgga cgagagttct ggttctggtc ccggtcgagc caaaaaagcc ccagaatcat
      901 gagcgcaaat acaacagtag caatcgtgcc cgacatttag agtttctcca ggagcatcac
      961 cgacaggacc gcccatatca tttagaagac ctaatctcct attatgagtt aggattacca
     1021 gacttttcgt gtgaccttgc cggtcgcatg tagagtagaa acaggtctct attagatcat
     1081 tttgtttcta cgaagtttct gtaacggatt
//
LOCUS       DATCGC010001974         1274 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_392791, whole genome shotgun sequence.
ACCESSION   DATCGC010001974 DATCGC010000000
VERSION     DATCGC010001974.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1274)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1274)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1274
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_392791"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(108..>1274)
                     /locus_tag="VIJ87_18795"
     CDS             complement(108..>1274)
                     /locus_tag="VIJ87_18795"
                     /inference="COORDINATES: protein motif:HMM:NF012485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446464.1"
                     /translation="SEELSTQPVDTVPKAVTIGNSKLIADQRANSIIILGNREVVMKV
                     EKILDEMDVKAPQVSLSTVIGQLTLSNTEEFGVDWFAKYNRRFVGTSRNNSVFTTNDP
                     GVPIPGSSVAPGSSAAPIVSNILDPANLINFSQIIQNVGGGTNLYVAAGNAFAAIVHL
                     LESTNRFRVLSRPTVFTSNNKKAIIASGQEVPVPVSTLTNSNFGGVVNNTAAVSASIE
                     YKKVVLQLEVVPLINSEKEVSLDILQKIDSIVPGGNVNISGNSVPTIDTRYIRTNVSA
                     GNGSTIILGGLIEDQKQKNYQGFPYLSRIPLLGAAFRSTASGKQRRELIILMCPEVTL
                     TKLDLFRLRQKWENKNTHFGPELDQAGCPDCPKVETGKQINLPPPDLPEGKDMH"
BASE COUNT          289 a          333 c          327 g          325 t
ORIGIN      
        1 ggatcgaaag ataccataat cgacaatgtc aaactcgtcg ccctgcgcga ccgttgcgct
       61 caacccgacg atcaaaacga gtgctattcg tttcataatt gcaaagttca atgcatgtct
      121 ttgccttcag gaagatccgg cggcggcaag tttatctgtt tgcccgtctc cactttgggg
      181 cagtccggac acccagcctg atccagttcc ggaccaaaat gtgtgttttt gttctcccat
      241 ttctgccgca gtcgaaaaag atccagcttc gtcaacgtca cctctggaca catgagaatg
      301 atcagttcgc gacgctgctt gccactcgct gtggaacgga atgccgcgcc aaggagggga
      361 atgcgcgaga gataaggaaa cccttgataa ttcttctgct tttggtcttc aattagtcca
      421 ccgaggatga tcgttgatcc gttccctgcg gaaacattcg tgcgtatgta acgcgtatcg
      481 attgtcggga ccgagttgcc gctgatgttt acgttgccac ccgggacaat gctgtcgatc
      541 ttttgcaaga tatcgagcga cacttccttc tcggaattaa tgagcgggac gacctcaagc
      601 tgaagcacga ccttcttgta ctcgatgctc gccgaaacag cagctgtgtt atttacaacc
      661 cctccaaaat tcgaatttgt aagggtgctt accggcacgg gaacctcctg ccccgaagcg
      721 atgatggctt ttttgttgtt gctggtgaaa acggttggcc gagaaagaac tctgaatcga
      781 ttcgtggact ccaacagatg cactatcgcc gcaaacgcgt taccggctgc cacgtaaaga
      841 ttagttccgc cgcctacgtt ttggatgatt tggctgaagt tgatcagatt ggctggatcg
      901 agaatattgg agacaatcgg tgccgcgctg ctgccggggg ctacggacga accgggtatg
      961 ggaacccccg ggtcattggt cgtaaacaca ctattattcc gtgaggtgcc gacaaacctt
     1021 ctgttgtact ttgcgaacca atcgacaccg aattcctcgg tattgctaag ggttaattgc
     1081 ccaatcaccg tgctcaacga cacctgcggg gctttgacgt ccatttcgtc gaggatcttt
     1141 tccaccttca tgaccacttc gcgattccca aggataatga ttgagttggc gcgttgatcc
     1201 gcgatcagct tcgaattacc gatggtgact gccttgggca cggtgtccac aggctgagtg
     1261 gaaagctcct cgga
//
LOCUS       DATCGC010001975         1353 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_295511, whole genome shotgun sequence.
ACCESSION   DATCGC010001975 DATCGC010000000
VERSION     DATCGC010001975.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1353)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1353)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1353
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295511"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            556..1017
                     /locus_tag="VIJ87_18800"
     CDS             556..1017
                     /locus_tag="VIJ87_18800"
                     /inference="COORDINATES: protein motif:HMM:NF020397.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1801 domain-containing protein"
                     /protein_id="HEY5446465.1"
                     /translation="MMKKATTTMKKRNPESLRGKEGKGGDSQLIDARIRELRDWRGET
                     LARIRILIKQTDPEVVEEVKWRKPSSPGGVPVWSHAGMICTGETYKNVVKLTFARGAS
                     LADPSGLFNSSLEGNTRRGIDFHEGDKIDEKALQALIRAAVALNTSSASDK"
BASE COUNT          310 a          350 c          395 g          298 t
ORIGIN      
        1 gaaccagtct tccggcgggg tctcgtggct ctcacgctga cgctcgttcc tctcgcctcg
       61 ttcgcgttcc ccatgagtgg gaccgaagaa agaggggagt tgtaatgccg ccgccatcag
      121 aagcggaatt gtgccgagtg ccaggattcg gaaccttggc tctttcatcc ttctcccacg
      181 aggcgaaatt tttgtaggaa tgtgcgagaa catcaagctg aatcgtacta tccccgtggg
      241 agcagcacat tcattctctg aggccgctgc aaaaggattg tctgtcgcct gttcgcaatg
      301 aagactttaa agccgctcca atgctttggt tacggactaa gtcattcgaa ctcttgttcg
      361 aaagacatag gtttgaccgc gtaagtttgg atctgattac agctcagcag tagttgcgac
      421 gcaacacggg agtgccggtg gcgagcggcg atacaactca ggccggtgca tcccctcgag
      481 agctggacgc gatttcttgc caaggccgac tcttcgagta aatgccacac tgttggttca
      541 aacttttcga aataaatgat gaagaaagcg acaacaacca tgaagaagag gaaccccgaa
      601 agccttcggg ggaaggaagg aaaaggagga gactctcagt tgatcgatgc gagaatcagg
      661 gagctgcgtg attggcgggg cgagacgctg gctcggatcc gaatactcat caagcagacc
      721 gaccccgaag tggtcgagga ggtgaaatgg agaaagccgt cgagcccggg aggcgtcccg
      781 gtgtggtcgc acgccgggat gatctgcacc ggtgagacgt acaagaatgt cgtgaagcta
      841 accttcgcca ggggcgcctc gttggcggac ccttcaggcc tcttcaactc cagcctcgaa
      901 ggcaatacca ggcgtggcat cgatttccat gagggcgaca agattgatga aaaggcgttg
      961 caggcgctca ttcgcgccgc cgtggcactg aacacgtcct cagcaagtga caagtgacgt
     1021 gtgacaataa gtgacgagtg actgggctcc tggcttgcag attcgaccca atcctagtgt
     1081 ccttcgtgaa cttcgtggtg agaaaaattc caggatcagg ggcgtcgctt tccggcccca
     1141 agcatcacgc aggctttctc gatccggcgc ctatgtgcct ccggttgttt ggctgagtcc
     1201 atccaactaa taaagtccct gcgctcgatc ggcgtgagat ccctccactg agccttcgcc
     1261 ttcggggtag ccgcgagggc tgtgtaaaga ttgaatgata ctattgaagg cgtctacgtg
     1321 tctctggttg tttggctgag tctatccaac tga
//
LOCUS       DATCGC010001976         1483 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_30852, whole genome shotgun sequence.
ACCESSION   DATCGC010001976 DATCGC010000000
VERSION     DATCGC010001976.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1483)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1483)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1483
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30852"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..861)
                     /locus_tag="VIJ87_18805"
     CDS             complement(<1..861)
                     /locus_tag="VIJ87_18805"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
                     /protein_id="HEY5446466.1"
                     /translation="MKAIHLTDYGNPAQNLRMVEVSEPNAPSASEALMRMEYAPINDS
                     DLLLAKGVYFLNPKLPSVIGGEGAGIVEAIGPGVTSVKVGDRVTVPFGTFTWSEKVLA
                     PAHGLFVVLPSIDARTASMLNINPTTAVLLLDEFVKLKAKDWIVLNAANSHVARCLIA
                     IAKSRDLKVVGIVRRSELIPEIEKLGVDFVGVESPDLPKQIQIATGGTPISLGLDAVG
                     GPATATMASVLSPGAHLVSYAWLSGLPIHVPQGDLIGKRLNIHGFWMYYEEYLPKMRA
                     ALTEATRVVAS"
     gene            complement(961..1377)
                     /locus_tag="VIJ87_18810"
     CDS             complement(961..1377)
                     /locus_tag="VIJ87_18810"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0030638 - polyketide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HEY5446467.1"
                     /translation="MSETMQKKNKALVLDAFDTLFNKRDYAAAKKYWSPNYIQHSAHI
                     EPGRDGLFNLIRSAPDTLRYEHQLIVAESDYVIVHGRFSGHGPPVPWIAADIVRIEND
                     RLAEHWDVLQDEATKAQSKSGLPMFGEEFSKEGEIK"
BASE COUNT          340 a          400 c          359 g          384 t
ORIGIN      
        1 ggaagcgact actcttgttg cctcagtcag tgccgctcgc attttgggga gatactcttc
       61 gtagtacatc cagaagccgt ggatgtttaa cctcttgcca atgagatcgc cttgcggaac
      121 gtgaatgggc aacccactca gccacgcata gctgacgaga tgagcacccg gtgaaagcac
      181 gcttgccatc gtcgctgtcg ctggaccacc tacggcatca agacccagag atattggtgt
      241 tccgccggtt gcaatctgaa tttgctttgg gaggtccggc gattccacgc ctacgaaatc
      301 aacgcccagt ttttcaatct ccgggataag ctcggaccgc ctgacaatac ctacaacctt
      361 gagatcgcgc gattttgcaa tcgcgatcag gcatcgcgca acgtgggagt ttgctgcgtt
      421 taatacaatc cagtctttgg cctttagctt tacaaattcg tctaagagaa gaactgcggt
      481 cgtcggattg atgtttaaca tcgaggccgt tctggcatcg attgaaggaa gaacgacaaa
      541 aagaccatgg gctggagcaa ggaccttttc agaccaggtg aatgtcccaa atgggaccgt
      601 aacacgatcg cctaccttga cgctggtaac tcccggcccg atcgcctcaa cgattcccgc
      661 accttcacct cctatgacag aaggaagctt cggatttaaa aagtaaactc ccttggctaa
      721 aaggaggtcg ctgtcattaa tcggcgcata ctccatgcgc atcagagctt cgctcgcaga
      781 cggcgcgttt ggttcggaaa cttcgaccat ccttaagttc tgagctggat taccgtagtc
      841 agtgagatga atggctttca ttaggagtct cctcgctcta gaaatcccgc cttgcgagag
      901 gaccacctgc ttgctgcatc agccctcgat cgcgaagatt tcccagatca atgttccata
      961 tcatttaatt tctccttctt ttgaaaactc ttcgccaaac attggcaggc cgcttttcga
     1021 ttgagctttt gttgcctcat cttgcaaaac gtcccagtgc tcggccaaac gatcgttctc
     1081 gatcctgaca atatccgcgg cgatccacgg aaccggcggg ccatgtcctg agaaacgtcc
     1141 atggacaatg acataatcgc tctcggcgac gatgagttga tgttcgtaac gcagcgtgtc
     1201 gggtgcgctg cggatcaaat tgaacaatcc atcgcgaccc ggttcaatgt gcgcgctgtg
     1261 ctggatgtag ttaggcgacc aatacttttt agcggctgcg tagtcccgtt tgttaaacaa
     1321 tgtgtcgaag gcgtcgagta ccagcgcctt atttttcttt tgcatcgtct cactcataac
     1381 aatttcctca tcctttcgtt attgcggtgt tggagtgttc atcactccgc agtcttagag
     1441 ttttgatccc ccgtctacag gaatgctcgc accagtgatc cag
//
LOCUS       DATCGC010001977         2094 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_329866, whole genome shotgun sequence.
ACCESSION   DATCGC010001977 DATCGC010000000
VERSION     DATCGC010001977.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2094)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2094)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2094
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_329866"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..615)
                     /locus_tag="VIJ87_18815"
     CDS             complement(<1..615)
                     /locus_tag="VIJ87_18815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446468.1"
                     /translation="MTISVNDTRSELKPSRTRWAGRLGRLGQLGIVREVFVILVFCLL
                     TTIVTWPYVTRLRDVVVDTGDPYLCAWILWWDYHQTFTNPLHLFDANVFYPLKYSLAF
                     SENSYGIALLFFPLFAIGLTPLTVHAIAMFMGFALNGYGAFRLGRTISGSTAIGWVSG
                     IVFAFVPYRFNMMSQVMYLFSPWIPLVFEALVLFARKSSNKRAAW"
     gene            935..>2094
                     /locus_tag="VIJ87_18820"
     CDS             935..>2094
                     /locus_tag="VIJ87_18820"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY5446469.1"
                     /translation="MIQNTLKKISFIHCPDSFLAETQQYGAMFMPVWAYTLAAYVEEP
                     ESYELSLFDMRFDSVEEIPAADLFVFSGVNQDYETIVDTHKRVRERHPNSTFVLGGPI
                     AWSLNEAGEIWKLEMFDHIFIGDGEEAFPRFIKLFSDRANLPKVLQTKQRFDVSKARG
                     FYRPFLDATFSRYYGAVLEVSRGCPFLCEFCDIRVLPDNNRPHNFPAAHIVSELDYLA
                     KLGIRQVLCAADNFIGDLRWAEDVLDEIIAWQERSGSRVALYTWLTINLGKHPKLLKK
                     MRQANFDMLFIGVESFSNNSLLETAKVQNTTGDMIQAIREIQSYGFAVVAGLIFGFDS
                     DTPDSFTTTLEGMAKSGLISGDPSLLTALPGTPLFRRMKLSGRLRNNKNSLGG"
BASE COUNT          547 a          515 c          528 g          504 t
ORIGIN      
        1 ccacgccgcg cgcttgttgc tactcttccg cgcgaacaaa accaacgctt caaacaccaa
       61 cggtatccac ggagaaaata gatacatgac ttgagacatc atgttgaatc gataaggaac
      121 gaaggcaaac acaatccccg acacccaccc gattgcggtc gagccactaa tggttcggcc
      181 aagacgaaac gcgccatagc cgttaagggc gaaacccata aacatagcga tcgcgtgtac
      241 ggtgagtgga gttaaaccga tagcgaaaag aggaaaaaac agcaatgcaa ttccgtagct
      301 gttttcgctg aaggcgagcg aatactttaa cggataaaac acattcgcat cgaagaggtg
      361 gagggggtta gtaaaggttt ggtggtagtc ccaccataga atccaggcgc agaggtaagg
      421 gtcaccggtg tccacgacaa cgtcgcgaag tctcgtaacg tagggccagg taacgatcgt
      481 cgtcaacaaa cagaacacaa gaatgacgaa gacttcgcga acaataccaa gttgccctag
      541 gcggcccagt cggccggccc atcgtgttcg agaaggcttc agctcgcttc gagtgtcgtt
      601 aaccgaaatt gtcatattgg actgcgcgca ttgctttcct gttgggagtg actttgttcg
      661 acgcgatcat tcctggttct gaatcaactc tgtcgtagtc tgttggagtc ggggattgtg
      721 ttagtcgaac gacttgatgt caagaatcta attcgtggtg gtatccgatt cacaagtcag
      781 tgcggttaca gctttcagta gccgacagcg acagaatcta actcgagaag ccgatttttg
      841 aggggattac aggcaagtca gaagtgacat cggaacatgg cctacccctg atgcatacac
      901 tccattatgc tagaattcga tccgagcgct gaaaatgatt caaaacactc taaaaaagat
      961 ttcgtttatc cactgccctg attctttttt ggctgagacg cagcagtatg gggccatgtt
     1021 catgccagtt tgggcctata cactggctgc ctacgttgaa gaaccagaaa gttatgaact
     1081 aagccttttc gacatgcgat tcgattctgt tgaagagatt ccagctgccg acctgttcgt
     1141 ctttagcgga gtgaatcagg attacgaaac gattgttgac actcacaagc gcgttcgcga
     1201 acgccaccca aattccactt tcgtacttgg agggccaatc gcctggtcgc tcaacgaggc
     1261 gggcgagatc tggaagttgg aaatgttcga tcacattttt atcggcgacg gcgaagaggc
     1321 ctttcctcgt tttattaaac tattctcaga ccgcgcgaat ttgcccaagg ttcttcagac
     1381 caaacagcga ttcgacgtgt caaaagctcg cggtttctac cgcccatttc tcgatgccac
     1441 ctttagccgc tactacggag cagtactcga agtgtcgcgc gggtgtccct tcctctgtga
     1501 gttttgtgac atcagagttt tacccgacaa taatcgtccg cataattttc ccgcggcgca
     1561 tattgtgtcc gaactcgatt atctggcaaa gcttggcatt cggcaggttc tctgcgctgc
     1621 tgataatttc atcggagacc tacggtgggc cgaggacgtg ctggatgaaa tcattgcctg
     1681 gcaggaacga agtggttctc gagttgcgct atatacctgg ctgaccatta accttggtaa
     1741 acacccgaaa ctcctcaaga agatgcggca ggcaaatttc gatatgctct tcattggggt
     1801 agaaagtttc agcaacaact cgctgctaga gactgcaaag gtacagaaca cgaccggtga
     1861 catgattcaa gccattcgtg agattcaatc atatggcttt gcagtagtag caggtttgat
     1921 ttttggattc gactcggaca cgcccgactc gttcacaact actttggagg gaatggcgaa
     1981 gtcaggtttg atatcaggcg atccttctct gctgacagca ttgccaggca caccactctt
     2041 ccgcagaatg aaactctctg gtcgcctgcg aaacaacaag aacagcctgg gcgg
//
LOCUS       DATCGC010001978         3532 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_30877, whole genome shotgun sequence.
ACCESSION   DATCGC010001978 DATCGC010000000
VERSION     DATCGC010001978.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3532)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3532)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3532
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30877"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..571
                     /locus_tag="VIJ87_18825"
     CDS             <1..571
                     /locus_tag="VIJ87_18825"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEY5446470.1"
                     /translation="GRGDATLLATVSASDPLLVDFAVSETEYLKMTDPETAGDKRGSL
                     RFDLMLSDESVHPYQGAFKVLDRTVDPQTGTMKVEATFPNPGGYLRPGQFARVRVAVA
                     ERENAIMIPQRAIQELQGAKTVMVVDAQNKVQVRSVKIGDKSDKDIVILDGLVAGERV
                     IVEGMQKVRPGSEVNPTAGDAATKTQGAN"
     gene            574..>3532
                     /locus_tag="VIJ87_18830"
     CDS             574..>3532
                     /locus_tag="VIJ87_18830"
                     /inference="COORDINATES: protein motif:HMM:TIGR00915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEY5446471.1"
                     /translation="MSNFFINRPIVAIVISILTLLIGVVVIKGLSIEQYPFLAPPNIR
                     VTATYPGASAEAVEQSVATPVEQEVNGVDRMIYMKSSNTSDGRMLLDVNFEVGTNQDT
                     ANVLTQNRVSTAAARLPAEVNQQGVTVKKQSPSILMVISLFSPTDSYDANFLINYAGI
                     NLRDQLLRIPGIAQVDLFGGTDYGMRVWIKPDRLAKLGLTPSDVISAIKEQNLQAPAG
                     KVGGAPTPTDQEFTETLSAPGRLITPEEFENVIVRQTNTGAVVRIKDIGRAELGSQDY
                     NSFGRLNGKPGGAMAVYLLPGANQLKAAETIYETMVHAKTLFPPNMDYKIVYDTTPAV
                     EASIHEIVKTFVEALILVTLVVFIFLQNIRATIIPLLTIPISLVGTFIFFPLLGFSIN
                     TLSMFGLVLAIGIVVDDAIVVVEAVIHHLEHGLPPKEATIKAMSEVSAPVIGIALILS
                     AVFVPVALLGGLVGSMYKQFALTIAISVLLSAFNALSLTPALCALMLREPKQMRGPLG
                     TFFRGFNKVFDVTTNGYVHVSRLLVRRGIVTIGIVGVVVLGALFFAKQIPAGFIPDED
                     QGILGVNVQLPPGASLARTSEVLKKVEEILAKTDGIDSYQTIGGYGVVTNTYQSNYGS
                     LFARLKPWEERHGEALHVRGIMAGLQRKFAAIPEGVVFAFNIPTLSGFGAASGFNFLI
                     QDRTGTMTIDELGEQSRRFITAGRQRPELGNLFTSFDPNYPQVKVDLDREKARTLGVP
                     VNEVFQTMSTAMGGAFVNDFNRFGRLYRVYVQAESIDRLNSDDIGRIYVKSRTTNSMV
                     PLSTLVTIKSIAGTELTTRFNLLRSVELQGSPARGYTSGQALKALEEVFAQTMPKEMS
                     FSYSSLSYQEKIAPPPGPTLLLAIICVFLLLAAMYESWRLPWAVLLGSPLVALGALFG
                     VWLFGYDNNVYVQIGLVMLIGLAAKNAILIVEFAKAKHDEGLSLEDAALTSAKLRFRP
                     ILMTAFAFILGVVP"
BASE COUNT          864 a          903 c          907 g          858 t
ORIGIN      
        1 aggaagaggt gacgcaaccc tactcgccac cgtctccgct tcggatccgc ttctcgtcga
       61 cttcgcagtt agtgaaaccg agtacctaaa aatgacagac ccggaaacgg caggggataa
      121 gaggggatcc ttgcgcttcg atttgatgct ctccgatgaa agcgttcacc cctatcaggg
      181 agctttcaaa gttttggaca gaacagtaga tccacaaacc ggcactatga aggttgaagc
      241 gacgtttcct aatccaggtg gttacctcag gcccggacag tttgcgcgag tgcgcgtcgc
      301 tgttgctgaa cgagagaacg cgatcatgat cccgcagcga gctatccagg aactgcaggg
      361 cgcaaaaaca gtcatggttg tcgatgcaca gaacaaggtc caagtgcgct ctgtcaaaat
      421 tggagacaag tctgacaaag acatagtgat actcgatggt ctggtcgccg gtgaacgtgt
      481 gattgtcgaa gggatgcaaa aggtaaggcc cggatcggag gtcaatccta cggcgggcga
      541 cgctgcgaca aagacgcagg gagctaatta atcatgtcta attttttcat caaccgtccg
      601 atcgttgcca tcgtcatatc aatcctgact cttttgatcg gcgtcgttgt gattaaaggt
      661 ctttccattg agcaatatcc tttccttgct ccgccaaaca ttcgcgtgac ggctacctat
      721 ccaggcgcct ccgcagaagc ggttgaacaa tctgtagcaa cccccgtcga acaagaggtc
      781 aacggcgtcg accgaatgat ctacatgaaa tcgtccaaca ctagtgacgg tcgcatgctg
      841 ctcgacgtga acttcgaagt cggcaccaat caggatacag cgaacgttct aacgcagaac
      901 cgagtttcaa cggcagcggc tcgcttacct gctgaagtca atcaacaggg tgtgacggtc
      961 aagaaacaaa gtccgagcat cttgatggtg atctcacttt tttcaccaac ggattcctac
     1021 gacgcaaact tcctcatcaa ctacgctggc ataaacctgc gcgatcaact cttgcgaatt
     1081 cccggcattg cgcaagtcga tctatttggc ggcaccgatt acggaatgcg tgtttggatc
     1141 aaaccggacc ggctggcgaa attaggctta actccttccg atgttatctc ggcaatcaaa
     1201 gaacaaaatc ttcaggcgcc ggcaggaaaa gtcggtggtg cacctactcc aacagatcag
     1261 gagtttaccg aaactctcag cgcacccggt cgactcatca caccggaaga atttgagaac
     1321 gtgattgttc gacaaacgaa cacgggcgca gtggttcgaa taaaagacat cggaagagca
     1381 gagcttggtt cacaggatta caactcattt ggacgactca atgggaagcc gggcggcgcg
     1441 atggcggttt accttcttcc gggtgccaac caactcaaag ccgcggagac aatctatgaa
     1501 acgatggtgc atgcaaaaac gctgtttcca cctaacatgg attacaagat cgtctacgac
     1561 acgacgcccg cggtcgaagc ttctattcac gaaattgtga aaacattcgt cgaagcctta
     1621 atactggtca cgctcgtcgt cttcatcttt ttgcagaata ttagagctac cattattccg
     1681 ctactgacaa tcccgatctc cttggtgggt acgttcatct tctttccact tctcggcttc
     1741 tcgataaata cgctttcgat gtttggtctc gttctcgcga taggcatcgt ggtggacgac
     1801 gccatcgtgg tggtcgaagc cgtcatacat cacctcgagc acggactccc tccgaaagag
     1861 gcaactatca aagcgatgtc cgaagtgtct gcgccggtga taggcatcgc gttgattctc
     1921 tcggctgtgt ttgttcccgt cgctttgtta ggcggactgg tggggagcat gtacaagcag
     1981 tttgctctta cgatcgccat ctcggtattg ctgtcggcgt tcaacgcact ctcgctcact
     2041 ccggcacttt gtgcgttgat gttaagagaa ccaaagcaga tgcgaggtcc actcggcacc
     2101 ttcttccgtg gattcaacaa ggtatttgac gtaacgacca acggttatgt tcacgtctcg
     2161 cgactgctgg ttcgacgtgg catcgtgaca atcgggatcg tgggcgtcgt agtacttgga
     2221 gcacttttct ttgcgaaaca gattcccgcc ggatttattc ctgatgaaga ccagggaatt
     2281 ctgggcgtca acgtgcagtt acctcccgga gcgtcgctcg ctcgcaccag tgaagtactc
     2341 aaaaaagtcg aagagatact agcgaagacg gatggtatcg attcgtatca aacgatcggc
     2401 ggctacggag ttgttaccaa tacgtatcag tcaaactacg gttctctgtt cgcgcgtttg
     2461 aagccgtggg aagaacgaca tggagaagcg ttgcacgtca gggggatcat ggccggcttg
     2521 cagagaaagt ttgcggccat acctgaagga gtagttttcg cattcaatat tcccacgctg
     2581 agcggattcg gagcggcctc gggttttaat tttctgatcc aggatcgcac cgggacaatg
     2641 actattgatg aactgggcga gcagtccaga agattcatta ctgccggacg tcaacgacca
     2701 gaacttggca atttattcac ttcattcgat cccaactatc cccaggtgaa ggttgactta
     2761 gatcgtgaaa aggcgagaac gctcggcgtg ccggtcaatg aagtctttca aacaatgtct
     2821 acggcgatgg gcggtgcatt cgttaacgac ttcaaccgat ttggacgctt gtatcgcgtg
     2881 tatgttcaag ctgaatccat agatcggttg aactcggacg acatcggaag gatctatgtc
     2941 aaatcgagaa ccaccaattc aatggttccg ctttcgacgt tggttaccat caagagcatc
     3001 gctggtactg aactcaccac tcgtttcaac ttgctgagat ccgtagaact acaaggttca
     3061 ccagcacgtg gttacacgtc aggccaagca ttgaaagcgc tcgaggaagt atttgcgcaa
     3121 acgatgccca aggaaatgag tttctcctac tcgtcgctgt cgtaccagga gaagatcgcg
     3181 cctccacctg gcccaactct gttactggcc attatctgtg tctttcttct actggctgcg
     3241 atgtacgaaa gttggcgact gccatgggcc gtgctcctgg gttcaccgct ggtagcttta
     3301 ggcgcgttgt ttggtgtgtg gctgtttggt tacgacaaca acgtctacgt acagatcggt
     3361 ctggttatgt taatcggact ggcggcaaaa aacgcgatct tgatcgtaga gtttgcgaaa
     3421 gcgaaacacg atgaaggtct ttcgctcgaa gacgccgcac tcacatccgc gaaactacgt
     3481 tttcgtccaa ttctgatgac cgcctttgca ttcatcctcg gcgttgtgcc tt
//
LOCUS       DATCGC010001979         1075 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_30881, whole genome shotgun sequence.
ACCESSION   DATCGC010001979 DATCGC010000000
VERSION     DATCGC010001979.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1075)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1075
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30881"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..370)
                     /locus_tag="VIJ87_18835"
     CDS             complement(<1..370)
                     /locus_tag="VIJ87_18835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446472.1"
                     /translation="MAPSNRLVEKTWIKDIYYRLRPLMPVSFRKHLQGIYLRNWEGIT
                     FPNWPLDRSVDILHERLLHMAMMAAQIDRLPFIWFWPEGKSACAVMTHDVETTAGRDF
                     CDRTMDFDDEFGIKGSFQVVP"
     gene            complement(740..>1075)
                     /locus_tag="VIJ87_18840"
     CDS             complement(740..>1075)
                     /locus_tag="VIJ87_18840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446473.1"
                     /translation="NDLESDEKIKIYDKGVERSSGLGDHALRVIHRAGDIWVPKLEQV
                     EALTRETQYFIDCIMNNHTPINDGLSGLRVVQMLEAVDRSMAQRGGMVYCKPTSTKGV
                     ATETTVTFG"
BASE COUNT          245 a          287 c          299 g          244 t
ORIGIN      
        1 caggcacaac ctggaacgaa cctttgatcc cgaattcatc atcgaaatcc atggtgcggt
       61 cacagaagtc acggccggca gtcgtttcga cgtcgtgggt catgacggcg catgcggatt
      121 tgccttcagg ccagaaccag ataaagggga gcctgtcgat ctgcgccgcc atcattgcca
      181 tatggagaag tcgttcatgg aggatatcca cgcttctgtc cagtggccag ttgggaaacg
      241 tgattccttc ccagttccga aggtagatac cctgcagatg tttcctgaag gacaccggca
      301 tcagagggcg caatcgatag tagatgtcct tgatccacgt cttctccacg aggcggttgc
      361 ttggagccac ataggattca taccgcaggt tgttgctgac ttgcgtcggg tcgaaaggga
      421 gaagcagcct gcgcccattg ctccggacat ggagcgatgc gtcatagaga gcgtcgccta
      481 cacgcgaacg agtctctcca tcggcttgac catagcaaac gacatctggc ccgaagcgaa
      541 agaatccgct ggtgggagga aaggaccccg tcaaggttgg aaccggaata tctgcgcaac
      601 ggtagaaatc cgaaaggcac gtcgagtgtt tcgctgaaac gggggctgaa ttcatcatgg
      661 aatgtaagac actcacggga ttaaacgaca ttctcccagt catttcgatt ggcgaaaagg
      721 tgttatgtcc tgctttgaat cagccgaaag ttaccgtggt ttccgtcgcc acccccttgg
      781 tcgaagtggg cttgcagtaa accatgccac cccgctgggc catggatcgg tccaccgctt
      841 ccagcatctg caccactctc agtccggaca gaccgtcgtt gattggagtg tgattgttca
      901 tgatgcaatc gataaagtac tgcgtttcgc gtgtgagagc ctcgacctgt tccagtttcg
      961 gcacccagat atcgccggca cgatggatga cgcggagggc atgatctccg agtccactgg
     1021 agcgctcaac acccttgtcg tagatcttga tcttttcatc ggattccagg tcgtt
//
LOCUS       DATCGC010001980         1339 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_392833, whole genome shotgun sequence.
ACCESSION   DATCGC010001980 DATCGC010000000
VERSION     DATCGC010001980.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1339)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1339)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1339
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_392833"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1279
                     /locus_tag="VIJ87_18845"
     CDS             <1..1279
                     /locus_tag="VIJ87_18845"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF024754.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HEY5446474.1"
                     /translation="IMVDEYQDTNKLQAQIVKLLTFRHDNVAVVGDEFQSIYSFRGAS
                     HKNMLEFPKLFPSAQIIKLEENYRSTQPILDVANSIMEDVKESFKKRLVSTVGGGEAP
                     VVVSARDENEQSRFVAQRIDELRDEGVPLTDIAVLFRSSSHSFDLEIELGKQGIPFRK
                     FGGIRFAESAHIKDALAFLRVVNKPSDTLSWFRMLKLIDHIGDATVYQILEHLGVEQR
                     DFRSARTKESLFRKLHRFPGRASYQTELVRLARVLTTVSESKSPAAQLSAVLKFYRPR
                     LKNKYDDAQRRGRDLEHLQTIAKRYKTSAKLLDDIALDPSDAVDGNASRRPSGYVTLS
                     TVHSAKGLEWNNLFVIWMTDGWFPSNRFQDEFDDLEEERRLLYVATTRAKKELSFVYP
                     VNVYRGPETDGTPALSRFLEPIPPEILVHASLD"
BASE COUNT          338 a          349 c          351 g          301 t
ORIGIN      
        1 catcatggta gacgaatacc aggacaccaa taagcttcag gcacagattg tgaaactgct
       61 gaccttccgg cacgacaacg ttgcggttgt cggcgatgaa tttcaatcga tctattcatt
      121 ccggggcgcg agccacaaaa acatgttgga gtttccaaag ctcttcccgt cggctcaaat
      181 catcaagctt gaagaaaact atcgcagtac gcagcccatt ctcgacgtcg ccaattccat
      241 catggaagac gtgaaggaaa gttttaagaa gcgactcgtc tcgacagtgg gcggtggtga
      301 ggccccggtg gtcgttagtg cccgagatga gaatgaacag tcgcggtttg ttgcccagcg
      361 tattgacgag ttgcgcgacg aaggcgtgcc gctcacggac atcgctgtcc tgtttcgctc
      421 aagttcgcat tcgttcgatc tcgaaatcga gctgggcaaa caaggaattc cgtttcgcaa
      481 gtttgggggt attcggttcg ccgaatcggc ccacatcaaa gacgccttgg ctttcttgag
      541 agtagtaaac aaaccgtctg acacgctctc gtggtttcgc atgctcaagt tgatcgacca
      601 catcggcgac gcgaccgtct atcagattct cgaacacctg ggcgttgaac agcgagactt
      661 ccgctcggcg cgaacgaagg agtctctctt tagaaaactg catcgctttc ccggtcgtgc
      721 cagttatcaa actgaactcg tacgcctggc gcgagtgtta acgacagtct ccgagagcaa
      781 gagtccggct gcacaattgt cggcagtgct aaagttctat cgcccgcgct taaagaacaa
      841 atacgacgac gcacaacgtc gcgggcgaga tctcgaacat ctgcaaacga tagccaagcg
      901 ttacaagact tcggctaagc tcctggacga cattgcactc gatccaagtg atgcagtgga
      961 tggcaatgcc agtcgacgac cttctgggta cgtcacgctc tcaacggtgc actctgcaaa
     1021 aggccttgag tggaacaacc tgtttgtcat ctggatgact gatggatggt ttccctcaaa
     1081 tcgtttccag gatgagtttg acgatcttga agaagagaga cgactgctgt acgtggcgac
     1141 aactcgcgca aagaaggaac ttagttttgt ctatcctgtg aacgtttatc gtgggccgga
     1201 aacggatggc accccggcgc tctctcgatt cctcgaaccg atcccgccgg agattcttgt
     1261 acacgcaagc ctggactgaa atagagccac agattacaca gatcaaacag atcagaaggg
     1321 ctgtgtacaa aagtccgaa
//
LOCUS       DATCGC010001981         1305 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_196132, whole genome shotgun sequence.
ACCESSION   DATCGC010001981 DATCGC010000000
VERSION     DATCGC010001981.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1305)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1305)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1305
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_196132"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            75..1202
                     /locus_tag="VIJ87_18850"
     CDS             75..1202
                     /locus_tag="VIJ87_18850"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY5446475.1"
                     /translation="MAKILVVGGGFGGIVAAESLSKKLGNGHEITLVSRSNKFVFYPA
                     LVRLAFGRATPEDIEFDVREAMADRRITFIQGEIARIHPADKQVTIAHGDLVGDMSYD
                     YLVLALGRRLKTERISGFFEHAHHLLDVESAESFGLAVNDFKGGHVLIGHCPDARLPV
                     PVFETAFALARRLEEEERRDQCTITIVSNEKLDEMFGSVAISESLTNAMETHGIEFVH
                     DFAISRVTPNALFATNGRSMSYDLNMIVPPFGGPGALMGTLLTDREGYVMVDKTMRAI
                     ADEYIYAVGDCANFPGPKMGHMAIGQGGVASDNLGARVLGKPCSVTYNHEMMLVIDEG
                     GKESVYVEKDLGAEEPADIYQSRFWGWAKRKQEQYWKARYA"
BASE COUNT          306 a          290 c          388 g          321 t
ORIGIN      
        1 ttgcgagtga actcaatacg agagagggtg tcagtggcgg tttgagctga attgaaagac
       61 cgagaggtag cgcaatggca aagatccttg ttgtaggtgg aggttttggg ggcatcgtgg
      121 cggctgagtc actttccaag aagctcggca atgggcacga gatcacactg gtatcgcgca
      181 gcaacaagtt tgttttctat ccagcgctgg ttcgactcgc attcggtcgg gccacaccgg
      241 aagatattga gttcgacgtt cgtgaagcga tggctgaccg tcgcatcact tttatccaag
      301 gcgagattgc gcgaatccat cctgcagaca aacaagtgac aatcgctcac ggcgaccttg
      361 tgggcgacat gtcatatgac tatctcgttt tggcgcttgg cagaaggctc aagacagagc
      421 gcatcagcgg attcttcgaa cacgctcatc atctcctcga cgttgagagt gcggaaagct
      481 ttggtctggc tgtaaacgac ttcaaaggtg gccacgtgtt gattggccat tgtcccgacg
      541 ctcgtcttcc ggttcctgtt tttgaaacgg cgtttgcgtt agcgcgtcgg ttggaagagg
      601 aggaacggag ggaccagtgc actatcacta tagtaagcaa tgagaaactg gatgagatgt
      661 ttggtagcgt tgcgatatca gagtctttga ccaacgcaat ggagactcac gggattgagt
      721 ttgtgcatga ctttgctatt tcgagggtca cacccaacgc cttgtttgct actaatggcc
      781 gtagcatgag ctacgatcta aacatgatcg tcccgccgtt tggtggtccc ggtgccttga
      841 tgggcactct cttaaccgat cgcgagggat acgtgatggt tgataaaacg atgcgggcga
      901 ttgcagatga gtacatctat gccgtcggtg actgtgcgaa cttcccgggt ccaaaaatgg
      961 gacacatggc cataggacag ggcggcgttg caagtgacaa ccttggggcc agggttctcg
     1021 gaaaaccgtg ctcagtaacc tacaaccacg aaatgatgtt ggtgatcgat gagggtggca
     1081 aagagtctgt ttatgtggaa aaggatttag gtgccgagga accggctgat atttatcaga
     1141 gtcgattctg gggctgggcg aaacgcaagc aggagcaata ctggaaggct agatatgctt
     1201 gaattcgaaa gtctgcctgt gtacctgtcg ctagttcaaa tactcatccg gcgcgcttga
     1261 agtattggac gtcgcgttca tgcttttcag cggctgcccg cgaat
//
LOCUS       DATCGC010001982         1297 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_30905, whole genome shotgun sequence.
ACCESSION   DATCGC010001982 DATCGC010000000
VERSION     DATCGC010001982.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1297)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1297)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1297
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30905"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..201)
                     /locus_tag="VIJ87_18855"
     CDS             complement(<1..201)
                     /locus_tag="VIJ87_18855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446476.1"
                     /translation="MNIKVLRANSALTIVRCIGLITCAALILTGMPLTRGVHAQTQTP
                     AQTPAQTQTPAQAQTQDEPAVKI"
     gene            complement(243..>1297)
                     /locus_tag="VIJ87_18860"
     CDS             complement(243..>1297)
                     /locus_tag="VIJ87_18860"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY5446477.1"
                     /translation="ACALAICISLLAYSIPGHSQSAAGFLFNDSHFHLTNYIQEGIDI
                     HDFLKIMGTKAGRVALFGIPLQQQWSYRVEENRAPTYYLNSDAPLYYYSFTDAWIAMA
                     FKSLSKEDQARFDPMITGFNPTDMYAADHVRRVLKAFPGVFTGIGEFSIHKEFVSAKI
                     SGVVASLFDPALDRLIDFASEVGLVILIHNDVDVPFAKPGAEPAYAKQIKALFLRHPN
                     ATFIWAHIGVGRIIRPIKEQAAIIENVINDPKLSHVYFDISWDEVAKYVVATPESTKN
                     AAALVNRHPDRFLFGTDEVAPPDQEKYLKVYNQYEPLWKLLTPEASEKVRKGNYERIF
                     DEARRKVRSWEAANVK"
BASE COUNT          311 a          310 c          327 g          349 t
ORIGIN      
        1 tattttcacc gcgggctcat cttgcgtttg cgcttgcgct ggcgtttgcg tttgcgctgg
       61 cgtttgcgct ggggtttgcg tttgcgcatg tacgccgcgc gtgagcggca ttccggtaag
      121 gatcagagcc gcgcaggtga ttagcccaat gcagcgaact atcgttagtg cactgtttgc
      181 tcgtagtact tttatgttca tacaggcctc ctgatcggct cttactaact tccaatttag
      241 aatcacttca cattggccgc ttcccaacta cggacctttc gtctcgcttc atcaaaaatt
      301 ctctcgtagt ttcctttgcg cactttctca ctggcctcag gagtaagtaa cttccacaaa
      361 ggctcatact ggttgtaaac cttcagatat ttttcctgat cgggtggcgc gacttcgtcg
      421 gtgccaaaaa gaaatcgatc aggatgtctg ttgactaatg cagcagcatt ctttgtcgac
      481 tccggggtag ccaccacgta cttcgctact tcatcccagg agatgtcgaa ataaacatga
      541 ctgagttttg gatcgttgat gacgttttcg atgatggcgg cctgctcttt aatagggcga
      601 atgattcgac ctacgccgat atgcgcccag ataaaggtag cgtttggatg tcgtaggaat
      661 aaggccttga tctgtttcgc gtaagccggt tccgctccag gcttcgcaaa aggcacatct
      721 acatcgttat gaatcaggat caccaagcca acctcactcg cgaaatcgat cagtcgatcg
      781 agagctggat caaaaagact ggcaaccaca cctgaaatct ttgctgagac aaattcttta
      841 tgaatgctga attcgccgat accggtgaac actcctggaa aggccttgag tacacggcga
      901 acgtgatcag ctgcgtacat atcggtcgga ttgaaacctg taatcatcgg atcgaatctg
      961 gcctggtctt cttttgaaag agacttaaag gccatagcta tccaggcatc ggtgaatgag
     1021 tagtaataga gcggagcatc ggagttcagg tagtacgtcg gtgctcggtt ttcttcgacg
     1081 cgatatgacc attgctgctg cagtgggatt ccaaacagag caacgcgtcc cgctttggtt
     1141 cccataattt tgaggaagtc gtgaatgtcg atcccttcct gaatgtagtt agtcagatga
     1201 aaatgagaat cgttgaagag aaaaccggct gcagactggg agtgcccggg aattgaatac
     1261 gcgagcaatg aaatgcaaat cgctaacgcg catgcta
//
LOCUS       DATCGC010001983         1713 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_159511, whole genome shotgun sequence.
ACCESSION   DATCGC010001983 DATCGC010000000
VERSION     DATCGC010001983.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1713)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1713)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1713
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_159511"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1117
                     /gene="fusA"
                     /locus_tag="VIJ87_18865"
     CDS             <1..1117
                     /gene="fusA"
                     /locus_tag="VIJ87_18865"
                     /inference="COORDINATES: protein motif:HMM:NF015706.4"
                     /note="EF-G; promotes GTP-dependent translocation of the
                     ribosome during translation; many organisms have multiple
                     copies of this gene; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HEY5446478.1"
                     /translation="GHLQTDANALNSTRGSVERLGALHVTQGKQLDKVTEAHAGDIIA
                     CVKLKETQTGDTLCDKGAPIVYDPVEYPEAAIAFAIEPKSRQDEEKISAALHKILEED
                     PALHFSRDAQTKEFLLSGSGQLHVETVVEKLKKRYGVEVTLHPPKVPYKETITQRAEV
                     QGRHKKQTGGRGQFGDCKCVFEPLPRGSGFVFEDKIFGGSVPANFRPAIEKGIIEAAK
                     AGAIAGYPLVDFKVQLVDGLYHPVDSDEHSFRAAGRKAFRAAMEKVKPSILEPVMDVE
                     IAAPQEYSGDIMGDLNSRRGRVQGMEMSGKQQVIKAQVPMSEMLNYQSILNSITAARG
                     SFHMQFSHYDPVPGQLASKIVEQSRAEGRIRGGEEEE"
     gene            complement(1248..>1713)
                     /locus_tag="VIJ87_18870"
     CDS             complement(1248..>1713)
                     /locus_tag="VIJ87_18870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446479.1"
                     /translation="VKTPDTGPPPPGSQGIGPGERMFKIESDIAGGGTYIFRRTGSNE
                     NEVKEQLGKQLIEGVEAEGSRSTITIPAGEIGNDRAIEIVSESWYSPELQMVIMTRHS
                     DPRSGETTYRLTNINRTEPAKTLFEVPTDYTLKEGFPKVPTGMVPTRKPKPE"
BASE COUNT          423 a          434 c          462 g          394 t
ORIGIN      
        1 tggacacctc caaacggacg ccaatgcatt gaactccact cgcggttcag tagaacgtct
       61 tggcgcgctg cacgttactc aaggtaaaca actcgacaag gtgactgaag cacatgccgg
      121 cgacatcatc gcgtgcgtga agttgaaaga gacgcaaaca ggcgacacgt tgtgcgacaa
      181 aggtgcgcca atcgtttacg acccggttga atatcctgaa gcggcgatcg cgtttgccat
      241 tgagcctaag tcgcgccagg acgaagaaaa gatcagcgcg gcgctacaca agatactgga
      301 agaggatccg gcgctgcatt tcagccgtga cgctcagacc aaagaatttc tgttgtcggg
      361 ctcaggacag cttcacgttg aaactgtggt tgagaaacta aagaaacgct atggcgttga
      421 ggtcacactt catccaccga aagtgccgta caaggaaacg atcacgcaac gagctgaagt
      481 gcaaggtcga cataagaaac aaacgggtgg tcgcggacag tttggtgatt gcaagtgcgt
      541 ttttgaacca ctcccacgcg gtagcggctt tgtattcgaa gacaagatct ttggcggttc
      601 ggtcccggca aacttccgac cggcgattga gaaaggcatc atcgaagccg caaaggctgg
      661 agcgattgcc ggctacccat tggtcgactt taaggttcaa ctggtcgatg gtttatatca
      721 tcccgtagat tcggatgaac actctttccg cgctgctggt cgcaaggctt ttcgtgccgc
      781 gatggaaaaa gtgaaaccat ccatactcga acctgtcatg gacgttgaaa tcgccgcccc
      841 gcaggaatac agcggcgaca tcatgggtga tttgaactca cgccgtggac gcgttcaggg
      901 aatggagatg agtggcaagc aacaagtcat taaggcccaa gtgccgatgt ccgagatgct
      961 caactaccag tcgatcctga attcgatcac agccgcacgt ggatcattcc acatgcagtt
     1021 ttcacactac gatccggttc cgggccagtt agcgtcgaag attgttgagc agtcacgtgc
     1081 tgaaggaagg attagaggcg gcgaggaaga ggagtaggag caggacgata tcgcttcggt
     1141 attgctctct caataaagga aaggcagcga cttctttcgc tgcctttcac tttttgatag
     1201 ggccactcaa gaacgagtgg cccttctgtt aattggtgat gagaaaacta ttctggctta
     1261 ggttttcgag tcggcaccat gcccgttgga accttaggaa aaccttcttt aagcgtgtaa
     1321 tccgtcggca cttcaaacaa agtcttggcc ggttccgtgc ggttgatatt cgtcaggcga
     1381 taagtcgtct cacccgatcg tggatcactg tggcgagtca tgatcaccat ttggagttca
     1441 ggtgaatacc agctctcgct aacgatctcg attgctcgat cattaccaat ctcacccgct
     1501 ggtatcgtaa tggtagagcg gctgccttcg gcctcaacac cttcaatgag ctgcttgccc
     1561 aactgctctt taacttcgtt ttcgttcgac ccggtgcggc ggaaaatata cgtcccgcca
     1621 ccagctatgt ccgactcaat cttaaacatg cgctcgcctg gaccgatgcc ttgtgatcct
     1681 ggcggaggag gaccggtgtc tggagtttta acg
//
LOCUS       DATCGC010001984         1060 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_95790, whole genome shotgun sequence.
ACCESSION   DATCGC010001984 DATCGC010000000
VERSION     DATCGC010001984.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1060)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1060)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1060
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95790"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..576
                     /locus_tag="VIJ87_18875"
     CDS             <1..576
                     /locus_tag="VIJ87_18875"
                     /inference="COORDINATES: protein motif:HMM:NF015684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HEY5446480.1"
                     /translation="QGTLTEPTIYELDSEAVHLNKIISGKSARWSADNHLVVSDTETL
                     ALSGMQVVRQTEPETSFENVEAPNVFKPSVDKPSQLSSPGLSAYLRAAKTKGVDVSAL
                     SVALQRKYAGPFGVVIMAFIGMPLAVSFGRKGTIIALCAAVVVSIAYWAVGGGFQQLG
                     NHGLLRPAVAGWSPLLIFAAAGTYFLSRVRT"
     gene            complement(579..>1060)
                     /locus_tag="VIJ87_18880"
     CDS             complement(579..>1060)
                     /locus_tag="VIJ87_18880"
                     /inference="COORDINATES: protein motif:HMM:NF017071.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HEY5446481.1"
                     /translation="PIGDIFVTVTGNRHVIDGDHFKTMKDGAIVCNSGHFDLELNLVA
                     LRELAGDPQTMRPFVEEYKLQSNGNRVMVLGEGRLINLAAAEGHPASVMDMSFANQAL
                     SVEYLIKNKGTLSPGVHLLPKEVDQEIASLKLRALGVSIDTLTAEQLEYISSWETGT"
BASE COUNT          243 a          275 c          285 g          257 t
ORIGIN      
        1 cagggcacac ttactgagcc aacaatttac gagctcgact ctgaagcagt acatctaaac
       61 aagatcatta gcgggaagtc agcgcgctgg tctgccgaca atcacctggt ggttagcgat
      121 accgagacat tggccctgag cggcatgcaa gtcgtacgtc aaaccgaacc tgaaaccagc
      181 ttcgaaaatg tcgaggcgcc aaatgtcttt aagccaagcg tcgacaagcc gtcacaacta
      241 agctcgccgg ggttaagtgc atatctacgg gccgccaaaa ccaagggagt cgatgtatcg
      301 gcgctgtcgg tagcgctgca acgaaagtac gccggaccgt ttggtgttgt gattatggcg
      361 tttattggaa tgcccctggc agtatcgttt ggcaggaagg gaacgattat cgcgctttgt
      421 gctgcggttg ttgtgagtat tgcttattgg gctgttggag gcgggttcca gcaacttggt
      481 aatcacggac ttcttcgtcc tgctgttgct ggctggtccc cgctgctgat cttcgcagca
      541 gcggggacct attttctatc cagagtccgt acctgaagtt aggtacctgt ttcccagctc
      601 gagatgtatt cgagctgttc tgcagtaagc gtgtcgatcg aaaccccgag cgccctcaac
      661 ttcaagctcg caatttcctg atcaacttcc ttcggcaaga ggtgaacacc tggcgaaaga
      721 gtacccttgt tcttgattag atattcaact gacagcgcct gattcgcaaa gctcatgtcc
      781 ataacgctgg ccgggtgacc ttcagcagca gcaaggttaa tcaaacgacc ttcaccgagc
      841 accataaccc tgttgccgtt cgactggagt ttgtattcct caacaaaggg tcgcattgtc
      901 tgcggatcgc cagccaactc gcgtaacgca acgagattga gctccagatc gaagtgaccg
      961 ctgttgcaga cgatagcgcc gtctttcatg gtcttgaaat ggtcgccgtc gatgacgtgt
     1021 cgattgcctg tgacagtaac gaagatgtcg ccgattggcg
//
LOCUS       DATCGC010001985         1759 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_62041, whole genome shotgun sequence.
ACCESSION   DATCGC010001985 DATCGC010000000
VERSION     DATCGC010001985.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1759)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1759)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1759
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62041"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..257)
                     /locus_tag="VIJ87_18885"
     CDS             complement(<1..257)
                     /locus_tag="VIJ87_18885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446482.1"
                     /translation="MTFRNPPEQTFDAHAIRQFTSCVRMLFMFAVCTLLCAGIIAAQK
                     PPSLPKKLPSADKIIDNYLKAIGGKNKVAAIKDASYEWVIQL"
     gene            complement(262..750)
                     /locus_tag="VIJ87_18890"
     CDS             complement(262..750)
                     /locus_tag="VIJ87_18890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446483.1"
                     /translation="MPNDPTKNIAQYKIAGGELNEYEFQQNQEEIAEQHQQDLENIIP
                     GTSPEKQVPQVIEDAMLLVQERAKTATKKSSRKASKPSNKKNAAKKAATKSIKKSAKK
                     TASTSKAAKKASRKTAKKSAARKVTKKSAKKSAKKPTKKAAKKFGQKAAAKKGRKRAS
                     KK"
     gene            1344..1419
                     /locus_tag="VIJ87_18895"
     tRNA            1344..1419
                     /locus_tag="VIJ87_18895"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1377..1379,aa:Thr,seq:cgt)
     gene            complement(1426..>1759)
                     /locus_tag="VIJ87_18900"
     CDS             complement(1426..>1759)
                     /locus_tag="VIJ87_18900"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEY5446484.1"
                     /translation="FASRRVAKRRAGEGLVDVKKAFVAACKDAGIEDFHFHDLRHTFA
                     TRLGDAGCNATTIARLLGHSNIQMSMRYTHASDDSLRNAVEYAQIGRVTTASQTLKQP
                     LTRVAVNI"
BASE COUNT          374 a          450 c          414 g          521 t
ORIGIN      
        1 agttgaatta cccactcgta gcttgcgtct ttgatcgcag caaccttgtt cttgccacca
       61 attgctttga ggtagttgtc gatgatcttg tccgctgaag gaagtttctt aggaagcgag
      121 ggaggctttt gagcagcaat aattccggcg caaagcagag tgcaaacggc aaacataaag
      181 agcatgcgca cgcagctcgt gaattgacga attgcgtgcg catcgaatgt ctgctcgggg
      241 ggatttcgga aagtcatcaa attacttctt gctggcgcgc ttgcgaccct tcttagccgc
      301 agctttctga ccaaatttct tcgcagcttt cttggtgggt ttcttagcgg acttcttagc
      361 cgactttttc gtcacttttc ttgctgcgct cttcttcgcc gtcttgcgag acgctttttt
      421 cgcagcctta cttgtagatg cggtcttctt ggctgacttc ttaattgact tagtagccgc
      481 cttctttgcc gcgttcttct tattagaagg cttcgatgct tttcgactcg acttctttgt
      541 cgcggtctta gcacgctctt gaactagaag catggcgtct tcgatgactt gtggaacttg
      601 cttctctggc gaagtcccag ggatgatatt ttccaagtcc tgctgatgct gctcggcaat
      661 ttcctcctga ttctgctgaa actcgtactc gttcaactca cctccggcaa tcttgtactg
      721 agcaatgttc ttcgttgggt cgtttggcat ttactgtttc tcccgcttgt ctggatccta
      781 tgtttagggg gctacgctaa tctaatgatc tcttatccgg ttttgaacac aaccgggcca
      841 cgcaaatttt gcgaattgtt tttaccataa gtcgtgaggc tagcagcact gttactgata
      901 cagatcaaag cgcgcttgtt ggagcggatt cgtccctagt ctcaaatctg caatcttaga
      961 tctgaaataa ggtactggtt cattttgagc aaggcatagt gtcagctgaa ttctacttct
     1021 cattctcacc gtggctttag cccggtgaaa caagctgcca acgactggaa accgtttcaa
     1081 ctgtttacct agtgccagca gacgtaaacg gttgaaaccg ttctcattct tgaccgctgc
     1141 cataacaccg ggctaaagcc acggtgagaa tgagaggaag ttcgcgagga ctctatgcct
     1201 tgctcaaaat gaaccagtac ctgaaatagg gtgttgggat atctaatgcc ccgacaccta
     1261 aaatagcgcc tgcttgacac tgcaaacaac gcattcgtat attgctttcg cgcttgcgca
     1321 cctcgttgtt ttcccatcgg tcggccggct tagctcagtt ggtagagcgt ctgattcgta
     1381 attagaaggt cgccggttca actccggcag ccggctccaa aagaatcaaa tatttacggc
     1441 cactcgcgtg agtggctgtt ttagtgtttg tgacgcagtt gtgacgcgac cgatttgtgc
     1501 gtactcaact gcatttctca ggctgtcatc cgatgcgtgc gtgtagcgca tcgacatctg
     1561 aatgtttgaa tggcccaaca gtcgcgcaat cgtcgttgca ttacatcccg cgtcacctaa
     1621 tcgcgtcgca aaggtgtgac gtagatcgtg aaagtgaaaa tcttctatgc ctgcgtcctt
     1681 gcatgcagcc acaaaagcct ttttcacatc taccaagcct tcacctgctc gcctctttgc
     1741 cacccgcctc gaggcaaac
//
LOCUS       DATCGC010001986         3833 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_493623, whole genome shotgun sequence.
ACCESSION   DATCGC010001986 DATCGC010000000
VERSION     DATCGC010001986.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3833)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3833)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3833
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_493623"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..209
                     /locus_tag="VIJ87_18905"
     CDS             <1..209
                     /locus_tag="VIJ87_18905"
                     /inference="COORDINATES: protein motif:HMM:NF014516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446485.1"
                     /translation="PFCLLDEVDAPLDEANVGRFTDKVVQMSANTQFIVITHNKRTME
                     MARALYGVTMEDAGVSKLVSVKFE"
     gene            206..937
                     /locus_tag="VIJ87_18910"
     CDS             206..937
                     /locus_tag="VIJ87_18910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446486.1"
                     /translation="MKKFSILKQGLPAAFMVLSAAIFTWAQEPSSAKQNIRPDKVVAP
                     AATSTPPSNGSVKYSYEFNQPKFYVKHIVFQHDSSGHGTITFERLNEDVPVVESVEIS
                     PAALTRITSDWAALNFLDSQVDYQADKDFSHLGTMKLIMEQGERKRVAEFNWTHNDAA
                     AALVAEYRRVTDQAILVFDISIARENQPLNAPKLMEVMESLIKRNGLSDPKQLIPLLR
                     DMSTDEHIPLIARNHALRIIKQIQK"
     gene            complement(944..2017)
                     /locus_tag="VIJ87_18915"
     CDS             complement(944..2017)
                     /locus_tag="VIJ87_18915"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY5446487.1"
                     /translation="MPLDPQAASQEVKNIRIFFAEVTATFSRKSFRPHPVFSGAHAQT
                     LGAYAWPRRRRLSSTVVNDEERLFQVDDGVQVLAQCRWQQNRRDHSTVVIWHGMEGST
                     SSVYMWSTAEKAFRAGFNVIRVNYRNCGGSEHLTPTLYHGGMSADLRKVIDELISKDG
                     LKRLFPIGFSLGGNMVLKLLGEYGENPPPEVVAASVVSPSVDLEASTNLILKGSNWLY
                     HKNFVRSLKNRIRAKHRLFPQLYDLKKLEEIKTIKDFDECFTSVANGFANADDYYFKS
                     SCVRVVDQIRVPTLIIHAEDDPFIPFEPLRQKAFTDNPYLLLIRTAKGGHVAFISARD
                     TTEDRFWAENRVVEFCKLSDEKL"
     gene            complement(2025..3341)
                     /locus_tag="VIJ87_18920"
     CDS             complement(2025..3341)
                     /locus_tag="VIJ87_18920"
                     /inference="COORDINATES: protein motif:HMM:NF018899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="POTRA domain-containing protein"
                     /protein_id="HEY5446488.1"
                     /translation="MHNYIKGFAWLSTLLLALSFQTAAQQNFKIAKIEFEGLKNLSLD
                     EIIATTELKVGQPFELAALDNAAQRLVDSGFFKNVAYRTKPNGDQITITFIVEEAKVA
                     TSRVIFDNFIWFSDGDLVAAIKGDVPSFSGTAPDNGDVVERITKSLQRFLHENQIEAT
                     VSYMASQDNPGSTSQEHVFSVTGIPMPICTLHFPGANNISEAKLIESSKSLVGNDYSN
                     KFVSLFAVNTLFPLYRQVGQLKATFAPPQGKPEASATCKAGVDLTIPIDEGLVYNWDK
                     AEWSGITGLTAQELNALLAMPAGQPVNGVKFDKATKEIQKAYGRKGYLLASIRSTPNF
                     DDAAHNVSYKMDVREGPQFRMGNFVTKGFSESVDKRLHERWALKTGDIFDQGYSMEFS
                     QKQMNEILRTMFLERNAQNKPVPNLKWDNKIDRTGLTVDVVLELTN"
     gene            3434..>3833
                     /locus_tag="VIJ87_18925"
     CDS             3434..>3833
                     /locus_tag="VIJ87_18925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446489.1"
                     /translation="MTSTKNRLSRRQVILDAWKRIDRDSAGAEELKVIQQELRKFLGT
                     GGVESPASLARVLADEGIKLRHPEVLQADSMWRERRLYELFGPRELQFETIAFGMESL
                     VKIEELYEELETEDDQEGIKNLLELVRELKT"
BASE COUNT          965 a          941 c          969 g          958 t
ORIGIN      
        1 caccgttctg cctccttgac gaagtcgatg ctccacttga cgaagcgaac gttggacgct
       61 ttactgataa ggtcgttcag atgtccgcca acacgcaatt catcgttatc acgcataaca
      121 aacggacgat ggagatggcg cgcgcgctgt atggtgtgac gatggaggat gcgggtgttt
      181 cgaagttagt atcggtaaag ttcgagtgaa gaagttttca atacttaagc aagggctccc
      241 cgccgcgttc atggttttga gcgcggcgat tttcacttgg gcgcaggaac cttccagtgc
      301 caaacaaaac attcgtccgg ataaggtcgt agccccggcc gcaacctcta ccccgccaag
      361 taatggctcg gtaaagtatt cctacgaatt caaccagccc aagttttacg tcaagcacat
      421 cgtctttcaa cacgactcga gtggtcatgg aacgatcact ttcgagcgac tgaatgagga
      481 tgttcctgtg gtggagtcag tggaaatttc accggcagcg ctgactcgca tcacctcaga
      541 ctgggccgct ctaaattttc tcgactctca agtcgactac caggctgata aggatttttc
      601 acacctggga acgatgaagc tcataatgga gcaaggcgaa cgaaagcgtg tagcagagtt
      661 taattggaca cacaatgacg ctgccgccgc gttggtcgct gagtatcgtc gtgtaaccga
      721 ccaggcaatc ctggttttcg atatatcgat tgcgcgcgag aatcagccac tgaatgctcc
      781 gaaactgatg gaagtgatgg agtcgttaat caagagaaat ggcctgtcgg atccaaagca
      841 gttaatccca ttgcttcgcg acatgagcac tgacgaacac atcccactga tcgcccgcaa
      901 tcacgcactg agaattatca aacagattca gaagtagaag taactacagt ttctcgtcac
      961 tgagcttgca gaattcaacc acacggtttt ctgcccagaa acgatcttca gttgtatccc
     1021 gcgccgaaat aaacgcgacg tgtccaccct tggccgttcg gatcaaaagc aggtaaggat
     1081 tatctgtgaa ggctttttgt cgtagaggct caaaaggaat aaatgggtcg tcttcagcat
     1141 gaatgattag cgttggcacg cgaatctgat cgacaactcg cacacaactc gatttgaagt
     1201 aatagtcgtc ggcatttgcg aagccattgg caactgaagt aaagcattcg tcgaagtctt
     1261 taatcgtttt gatctcctcc agcttcttca gatcataaag ttgcgggaag agacgatgct
     1321 ttgctcgaat cctgttcttc aaactccgaa cgaaattctt atgatagagc cagttcgagc
     1381 cttttagaat cagatttgtg ctggcttcta gatcgactga aggtgaaact acggaagccg
     1441 cgacgacttc gggtggcggg ttttcaccgt actcacccaa aagcttcaag accatattcc
     1501 caccaagcga aaatccgatc ggaaaaagac gctttaggcc atccttcgaa attagttcat
     1561 cgatgacctt tcgcagatcc gcgctcatac caccgtgata gagcgtcggt gtcaggtgtt
     1621 cgctaccgcc gcagttgcga tagttgaccc gaatcacatt aaatccggcg cgaaaagcct
     1681 tctccgcggt cgaccacatg tagacagaac tcgtcgagcc ttccatccca tgccagataa
     1741 ccaccgttga gtggtctctt ctgttttgtt gccagcgaca ctgcgcgaga acctgaacac
     1801 cgtcgtcgac ttgaaagagt cgctcttcat cattaaccac ggtggaactt aaacgacggc
     1861 ggcgcggcca cgcgtacgca cccagggttt gtgcgtgggc tccactaaaa acagggtgag
     1921 gtctaaaaga cttgcgtgag aatgtggcag tcacctcggc gaagaaaata cggatgttct
     1981 taacttcctg acttgcagct tgaggatcaa ggggcatgct gatgttagtt cgttaattca
     2041 agtaccacgt caaccgtcaa gccggtacgg tcgattttgt tgtcccactt tagatttgga
     2101 accggcttgt tttgggcgtt gcgctctaaa aacatcgtgc ggagaatttc attcatttgc
     2161 ttttgtgaaa actccattga gtaaccctga tcgaaaatgt caccagtctt cagagcccaa
     2221 cgctcatgca ggcgcttatc aactgattcc gaaaatccct tggttacgaa gttccccatc
     2281 cgaaactgtg gtccttcacg aacgtccatc ttgtagctga cgttatgggc agcgtcatca
     2341 aaatttggag tgctgcggat gctggccagc aggtagcctt tgcgaccgta ggccttttgg
     2401 atttctttcg tggctttgtc gaacttgact ccatttactg gctggcctgc cggcatggcg
     2461 agcaacgcgt tcaactcctg tgcagttaga ccagttatcc ccgaccactc cgctttgtcc
     2521 cagttgtaaa ccaggccttc atctatggga atcgttagat cgacaccagc tttgcaagtc
     2581 gcgcttgcct cgggtttccc ctgaggcgga gcaaacgtgg ctttcagttg acctacttgc
     2641 cggtagagag gaaatagagt gttgacggca aacagactta cgaacttgtt tgagtagtcg
     2701 tttccgacaa gtgatttcga actctcaatc aactttgctt cagagatatt atttgctccc
     2761 ggaaagtgca acgtgcatat aggcatcggg attccagtca cactgaaaac atgttcctga
     2821 ctggtactcc caggattatc ctgggatgcc atgtacgaga cggttgcctc gatctgattc
     2881 tcgtgcagga agcgttgaag tgactttgtg attcgttcaa cgacgtcgcc attatcaggg
     2941 gcggttcctg agaacgacgg cacgtcgcct tttatagccg caaccaaatc accgtctgag
     3001 aaccaaataa agttatcgaa aatgactcgc gacgttgcga ctttcgcctc ttcaacaata
     3061 aacgttatcg ttatctggtc gccatttggc ttcgtgcggt aggctacgtt tttgaagaag
     3121 ccgctatcga cgagtctttg ggcggcgtta tcgagcgctg ctagttcaaa cggttggccg
     3181 actttcaact cggtcgtcgc aataatctcg tcgagagaaa gattcttcag accttcaaat
     3241 tcgattttcg cgatcttgaa attctgttga gccgcggttt gaaaactgag agccagtaaa
     3301 agtgttgaga gccaagcgaa ccccttaatg taattgtgca ttcgtcattt cctgtgagaa
     3361 ttggagcaag ttcgagcgca gagagtttag cctaaggtcg aaactgcgaa aaggtgagtc
     3421 aaagaaaacc tttatgacat ccaccaagaa tcgactgtcg cggcgccagg tcattcttga
     3481 tgcctggaag aggatcgacc gtgattctgc gggcgccgag gaactcaaag taattcagca
     3541 ggagctaagg aaattccttg gcaccggcgg cgtcgagagc cctgcaagtt tggcaagagt
     3601 cctcgccgac gagggaatca aacttcgtca cccagaggtc cttcaagcgg attcgatgtg
     3661 gcgggaacga cgcctgtatg aactgttcgg tcctcgtgag ctacagtttg aaacgattgc
     3721 atttggcatg gagtcgctgg tgaagattga ggaactttac gaggagttgg aaaccgagga
     3781 cgatcaggaa ggcataaaga acctgttgga actggttcgg gaactaaaga ccg
//
LOCUS       DATCGC010001987         3142 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_228201, whole genome shotgun sequence.
ACCESSION   DATCGC010001987 DATCGC010000000
VERSION     DATCGC010001987.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3142
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_228201"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..848
                     /locus_tag="VIJ87_18930"
     CDS             <1..848
                     /locus_tag="VIJ87_18930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446490.1"
                     /translation="WMLANGGDEAPWLPAGLAVSVVLLVALSAREVVMRRAWTRYLLE
                     HGIQEKAKSGSSHTGRSQKKSFSSSLHSAALRTIQKQSSDADAPGSTPEAHFEVAHLC
                     HDYLASTEEAMRSGSLGSEKGIAIRAGQERVRSLHKHHLLTWARGHSRELTREAQQRA
                     RTFDKIETANRALECIHSALRVYPDEPELHDSKAAIGEFIASVKVAHWVELAERSAFK
                     GHYRRAIDRYRDALFYLNQEVVKADVRAAGSARIEGEIAKLRAAALQSNNTKDKMSVD
                     GQIVD"
     gene            1167..2198
                     /locus_tag="VIJ87_18935"
     CDS             1167..2198
                     /locus_tag="VIJ87_18935"
                     /inference="COORDINATES: protein motif:HMM:NF014606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015774 - polysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HEY5446491.1"
                     /translation="MRIKIVSAVAFAALCIAVALVHAQEPQQSTSSTGSQQSGMDIQG
                     IKTYLLGPGDVVEIRVFGQPDLNSTAQVDGDGNLNSLPFLEAPIRAKCRSEKEVQKEI
                     ATAYAKFINNPQVSVRISERNSRQPAVVFGAVRSPTRVEMKRKVRLNELVAVSGGFTE
                     RAAGTIQILHTEPLMCPGPGEEADAAPIDGTKIPLEIIKINELRSGKVEANPVIRPGD
                     YVLVTEAEPVYITGAVVSPTAVFLREQLTLGRALAMVGGTRKEAKNTEVKIYRQKPGS
                     IEQEIIPVDYAAIKKNQKPDVILMPYDVIEVPEAGMFSSQRLGTTLMNAVIGGASTAI
                     STAGTRVIY"
     gene            2228..2482
                     /locus_tag="VIJ87_18940"
     CDS             2228..2482
                     /locus_tag="VIJ87_18940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446492.1"
                     /translation="MNRKTLAGDRRRRKTITALWVLGISILVIVLIYKEMTAVLYILA
                     TLGVTVLLFLVAFSDLSHADGGTGQMVQSKDASGVANKLT"
     gene            2862..>3142
                     /locus_tag="VIJ87_18945"
     CDS             2862..>3142
                     /locus_tag="VIJ87_18945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446493.1"
                     /translation="MGFFQRSRRKFQLWLYEGKKRSGSSQDSSTPHKQHPWWQVMCLT
                     GVDYFSTLGYQPGIAFLAAGALSPIATLVLIFLTLFGALPMYKRVAAESP"
BASE COUNT          780 a          748 c          845 g          769 t
ORIGIN      
        1 ggtggatgct ggccaatggt ggcgatgaag ctccgtggtt acccgcaggc ctggcggtca
       61 gtgtggtttt gttggtggca ctgtcggcac gtgaagttgt aatgcgtagg gcctggactc
      121 gctatctcct tgagcacgga attcaggaaa aagcgaaatc aggaagtagt catacgggtc
      181 gcagtcaaaa gaaaagtttc tcatcctcgt tgcattccgc ggcgctacgc acaattcaga
      241 agcaatcaag tgacgctgat gcacctggct caacacctga ggctcatttt gaagttgcgc
      301 acctttgtca tgattacctt gcaagtaccg aagaagcgat gcgttccggc agtttaggca
      361 gcgagaaggg catcgcaatc cgcgccggac aggaacgcgt gagatcccta cacaagcacc
      421 acctgcttac gtgggcacgt gggcattcgc gcgagttgac tagagaagct caacagagag
      481 ctcgaacatt tgataagatc gaaacagcaa acagggcgct tgaatgcatt cactccgcgc
      541 ttcgggtcta tcctgacgag ccagagttgc acgattcgaa agcagcaatt ggggagttca
      601 ttgcgtctgt taaggtggcc cattgggttg agctcgccga gcgttcagct tttaaaggac
      661 actatcgtag ggcgattgac aggtatcgcg atgcgctgtt ctacctaaac caagaagttg
      721 tcaaagcaga tgttcgcgca gctggatcgg ctcggatcga aggagagata gctaaactcc
      781 gggctgctgc attgcaatcc aacaatacga aagacaaaat gagtgtggac ggtcagatcg
      841 tggactaata cgatggcttt tcagaagtgt ccaaaatgcg gaagttcgcg aattcgacga
      901 ggctacaaac atacgccttt gctaatgcgt ctgtttggct tctaccacct tttgtgcgat
      961 cattgcaact tgctttttac gggttttgtg ctacctggaa cgctgaagaa tagtcatcgc
     1021 aagaagcacc ggaatcgcaa aaaaggcgat gaggacgaag atatttctgt aacgagctcg
     1081 gcaactagcc gctgaaaatg aaagttgctt agagctgtcc acccccttac tcaaaaacat
     1141 tagtgcccgt gagatgaggt cgtaacatga gaattaagat tgtgtctgcc gttgccttcg
     1201 ctgctctttg tattgcagta gctttggttc atgcacaaga accgcaacag tcaacatctt
     1261 cgacgggttc acaacagagt ggcatggaca tccagggtat taagacctac ttgttggggc
     1321 ccggagacgt agttgaaatc cgcgtttttg gtcagccgga tttgaattca acggctcaag
     1381 ttgatgggga cggaaacctt aattcactac catttctcga ggcgcccatt cgcgccaagt
     1441 gtcgcagtga aaaagaggtt cagaaggaaa ttgcgacagc ctacgcgaag ttcatcaata
     1501 acccgcaggt tagcgttcga atttctgaga gaaacagccg gcaacctgcg gtagtgtttg
     1561 gtgcagttcg ctcaccgacg cgcgtcgaga tgaaacgaaa ggttcgttta aacgaactgg
     1621 tggctgtgtc aggtgggttt actgagcgcg cggccggaac cattcagatt ctccataccg
     1681 aaccactgat gtgtccgggg ccaggcgaag aagctgacgc agcgccgatc gacggaacaa
     1741 aaatccctct tgagataatc aagataaatg aattgcgttc gggcaaagtg gaagcgaatc
     1801 cggtcattag accgggcgac tacgttcttg taactgaagc cgaaccggtt tacataacag
     1861 gcgctgttgt ttcaccaact gccgtgtttc tacgtgaaca gcttaccctg ggtcgagcgt
     1921 tggcaatggt gggcggcaca cgcaaggagg ccaagaatac tgaagtaaag atttaccgtc
     1981 agaagcctgg ctcgattgag caggaaataa ttccagtcga ctatgccgca atcaagaaga
     2041 atcaaaagcc agacgtgata ttgatgcctt acgacgtaat tgaggtacct gaggcaggca
     2101 tgttttcatc tcaacgactt ggcactacct tgatgaacgc cgtgatcggt ggagcttcaa
     2161 ccgcaatctc aacggctgga actcgagtga tttattagtc cgaattaaga agaagagtta
     2221 actaacaatg aatagaaaaa ccttggcggg agatcgtcgc cgccgcaaaa caattacagc
     2281 gctctgggta ttgggtattt ccatcctggt aatagtcctc atctataagg aaatgacggc
     2341 agtcctctac atccttgcta cgcttggtgt gacagtgctc ttgtttctgg tggccttttc
     2401 agatctttct cacgcggatg gaggcactgg tcagatggtc cagtccaagg atgcatcggg
     2461 tgtcgcaaac aagcttactt gagactagaa acacttctcg acagcaacat ttcagtcgaa
     2521 tctatacttc aattgacgcg acttatacat gcgataagtt tgtctataac tgttcgctac
     2581 tcatcgtgtt ttgtgcgcta tattgtacaa atgagtaggt tgaaagttta gtcggactat
     2641 tgcataatcc cgctgcgttc acctccccgg tggacgaagt ggtcgcgtgg ggtgaggaca
     2701 cgtggcctta gggtgggggc tgtgggaggc ccccgcccgc tttttttgtt agcaggtcaa
     2761 gcgacgggtc cccgtggtga agtttttctg ttgacctagt gtttctaggc cccgattatt
     2821 catcggcgag atccatttca acgtgctgaa cggctgacaa gatggggttc ttccagagat
     2881 cacgacgcaa gttccaactc tggctttacg agggcaaaaa acgcagcggc tcctcgcagg
     2941 attcctctac tccccacaag caacatccct ggtggcaggt catgtgtttg accggcgtcg
     3001 attatttttc gactctcggt tatcaaccag gcatcgcttt tctcgccgcc ggcgcgcttt
     3061 cgccgatcgc cacgttggtg ctgatttttt tgactttgtt tggcgcgctg cccatgtaca
     3121 aacgcgtcgc cgccgagagt cc
//
LOCUS       DATCGC010001988         2268 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_493677, whole genome shotgun sequence.
ACCESSION   DATCGC010001988 DATCGC010000000
VERSION     DATCGC010001988.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2268)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2268)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2268
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_493677"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1104)
                     /locus_tag="VIJ87_18950"
     CDS             complement(<1..1104)
                     /locus_tag="VIJ87_18950"
                     /inference="COORDINATES: protein motif:HMM:NF014686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HEY5446494.1"
                     /translation="MTELQKPALNIICLATYFKGADFMRECKAHGCNVVLITKEKMLK
                     EDWPRESLEDLIAVPNDAGPPLFIDLLAFISRKMKVDRVVALEEFDVVTAALMREHLC
                     MPGLSSSEAKVFRDKLSMAVRSQKGGINVPEFVPLINPDDIRSFMETVPGPWVIKPRS
                     DVSAIGIRKVAETNEVWRAIDEMNERENLRERASYYVLARFIPGEVFHVDSVVNGGKV
                     VFSGVNQYGRPPMQVAHQGGAYISSTLLRGSADEKTLTAINKKLVKALGLRQGATHAE
                     FIKSNVDGKFYFLEIASRVGGAYIAEVLEAASGVNLWREWARIEIANGTSARPIKTLR
                     KEYAGIILSLAKQESPDTTSYDDEEIVYRVKKSH"
     gene            1415..>2268
                     /locus_tag="VIJ87_18955"
     CDS             1415..>2268
                     /locus_tag="VIJ87_18955"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY5446495.1"
                     /translation="MIIKSPYPDVEIPQTSFTNFVLERAGERGDKPALIEAPTGRTIT
                     YSQLADSIRRAASNLSLKGFKQGEVFGILSPNIPEYAIVLHAVATLGGIVTPINPLYT
                     DREIAHQLRDSSARYLVTVPACLEKAKEAAREVGIEELFVFGSADGATPFDSLLAETD
                     HPIPKIEIDPLNDLVVLPYSSGTTGLPKGVMLTHHNLVANMRQMDGLDYFYDSDTLIC
                     VLPMFHIYGLVVVLNMGLYKGATIVTLPRFELEAFLKAAQDYEVTLAHIVPPIVLHLS
                     KNPIVDNY"
BASE COUNT          561 a          606 c          504 g          597 t
ORIGIN      
        1 atggctcttc ttcacacgat atacgatttc ttcatcatca taagaagtag tgtcaggact
       61 ctcctgcttc gcaagcgata gaattattcc tgcgtattct tttcgcaaag tcttgatggg
      121 tctggctgaa gttccattcg caatttcgat cctggcccat tcgcgccaaa gatttacgcc
      181 ggaagctgcc tcaagaacct cggcaatgta cgctccccca actcgcgacg cgatctccag
      241 aaagtaaaac tttccatcga cgttactctt gatgaactca gcatgcgttg caccctgccg
      301 aagaccgagc gcttttacta gtttcttgtt aatggccgtc aaagttttct catcggctga
      361 accgcgcagc agtgtacttg aaatgtatgc acctccctgg tgagctacct gcatcggcgg
      421 acgtccgtac tggtttaccc ctgagaacac aaccttgccg ccatttacca cagaatcaac
      481 gtgaaacacc tccccgggta taaaccgcgc cagcacgtag tacgaagctc gctcacgaag
      541 attctcgcgc tcgttcatct catcgatcgc tcgccaaact tcgttagtct ccgcaacctt
      601 tcgaattcct attgcagaga catctgaacg tggcttaatc acccagggac cgggaactgt
      661 ttccataaat gaacgaatgt cgtctgggtt tatcaacggc acgaattccg gcacattgat
      721 tcctcctttt tgacttcgca ctgccatcga caatttgtct ctgaatacct tagcttcaga
      781 actactcaag cccggcatgc acagatgctc gcgcatgagt gcggcggtta ctacatcaaa
      841 ctcttccaac gcaacaacgc gatcgacttt catctttcga gagatgaatg cgagtagatc
      901 aataaataat gggggtcctg catcgtttgg aaccgcgatc agatcttcga gactttcgcg
      961 gggccagtct tccttcaaca ttttttcctt cgtgattagc acaacgttgc agccgtgtgc
     1021 cttacactcg cgcatgaagt cagccccctt gaaataggtg gccaggcaaa tgatgttgag
     1081 ggccggtttc tgaagttcag tcatcaatat cctcgaaggt cagcggttca cgatgtcgat
     1141 aggctgggaa atataaacac ttttcaggga atgaagcatg ctttatggta acaggcggga
     1201 gatttatgat ttgtcattgg acgaactatt ggtcatatag catttgacat ttttcatttg
     1261 ccaattgacc gagccacacg ctaccgcgtt gtggtactga ctccatcgca ctgagatccg
     1321 gtttcattaa cacgaaagcc tacgtgcaaa tgaaaaatgt ccaatgacca atgaaaaata
     1381 gtccttacta gcgccctttt ccaatcggac ccctatgata attaaaagcc cctatcctga
     1441 tgtcgaaata ccacaaactt cgtttaccaa cttcgtcctg gaaagagcag gtgaacgcgg
     1501 tgataagccg gcacttattg aggctcctac tggtcgcacc attacctact cccaactggc
     1561 cgattcaatt cgacgagcag cttcgaacct ttcactgaag ggattcaagc aaggggaagt
     1621 ctttggcatc ctgagtccaa acattcctga atatgcgatt gtcttgcacg cggtggctac
     1681 gctcggcggc atcgttacac ccattaatcc actctacacc gaccgtgaga tcgcacatca
     1741 gctccgggat tccagcgcgc gttacctggt tactgttcca gcatgtctgg aaaaagcgaa
     1801 agaagctgcg cgggaagtgg gcattgaaga gttgtttgtc tttgggtccg ctgacggagc
     1861 aactccattt gattcacttc tcgctgaaac tgaccatccg attcctaaga tcgagattga
     1921 tccacttaac gaccttgttg tgcttcccta ttcgagtgga acaacgggat tgccgaaggg
     1981 tgtcatgctc acgcatcaca acctcgtagc aaacatgagg cagatggacg gtctcgacta
     2041 cttttacgac tctgacactt tgatttgtgt tctcccgatg ttccatatct atggtctcgt
     2101 cgtcgtcctg aacatgggcc tctacaaagg cgcaaccatt gtcacgttgc cacgtttcga
     2161 attagaagcg tttctgaaag cggcgcagga ctacgaggta actcttgcgc atatcgtacc
     2221 tccgatcgtt ttgcatttga gcaagaaccc gatcgtggac aactacaa
//
LOCUS       DATCGC010001989         1999 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_228207, whole genome shotgun sequence.
ACCESSION   DATCGC010001989 DATCGC010000000
VERSION     DATCGC010001989.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1999)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1999)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1999
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_228207"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1881)
                     /locus_tag="VIJ87_18960"
     CDS             complement(<1..1881)
                     /locus_tag="VIJ87_18960"
                     /inference="COORDINATES: protein motif:HMM:TIGR03434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5446496.1"
                     /translation="MFHDLRYALRILLKNPVVTVVAVLTLALGIGANTAIFSVLNAVV
                     LRPLPYADPDRLVMVWETVAANDKRSAAPGNFNDWRAQNSSFSDMAATFYGNFNLTGN
                     GEPERVNGSTVTSNLMSTLGVAAQLGRTFQPDDDDHQDRRLVIIGDGLWQRRFGGDKT
                     VIGKTITIDEAAYTVVGVMPAGFKFPVQSDLWVLGKDRNAVSMSLISQFPDNDWSHER
                     DAHFMNVVARLKPNATLAQAQSEMAGIARRLEQDFPKTNGGLGSNVISLHTQVVGNVK
                     TLLSILLGAVALVLLIACTNVASLLLARATQREREFAIRRAVGANRWRLVRQLLTESL
                     LLSLAGGIVGLALSVWVVDLFIKLSPGDIPRLNEASVDLRLLGFTFLVSMLTGIAFGL
                     WPAMQATGGSLNQSLKESGAKASEGKQRRRARSVLIVTELALAQVLLVGAGLLIMSYV
                     RVSQIDPGFNADHVLSAKIAPAASKYPDLKSRAQFYTRVLEQLRSLQGVTSVGMVMNL
                     PLSGASMNRGFRVEGRPEPRSDENVSMDYQVVSHDYFSTLEIPVIGGRGFTDQDTATA
                     PRVIVIDEAMAERYWPNEDPVGKRMAIGESSKETSWRTIVGVVGNVRHASLTDAPVPT
                     AFI"
BASE COUNT          474 a          564 c          497 g          464 t
ORIGIN      
        1 gatgaaggct gtaggcacag gtgcgtcagt caaactggcg tgtcgcacat ttcctacaac
       61 gcctacaatc gtgcgccagg aagtctcctt tgaactctcc ccaatcgcca tacgcttccc
      121 aactggatct tcattgggcc agtaacgttc agccatcgct tcatcaatca cgatcacacg
      181 tggtgcagta gctgtgtcct gatcagtgaa tccacggcca ccgataaccg gaatttcaag
      241 agtggaaaag tagtcgtgac ttacaacctg gtaatccatc gaaacatttt cgtcggacct
      301 cggttcgggc cggccttcaa cgcgaaagcc acgattcatg ctcgcaccac tcagcggcag
      361 gttcatcacc attccaaccg atgtgactcc ctgtagactg cgcagttgct ccagcaccct
      421 ggtgtaaaac tgtgcacggc ttttcaaatc gggatactta cttgcggcgg gcgcaatctt
      481 cgctgacaaa acatgatcgg cgttgaagcc gggatcgatc tggctgacac gcacgtaact
      541 catgatcagc aaacctgcac ccaccaacag cacttgggcc agagctagct ccgttacaat
      601 caatacactt cgtgcccgtc gacgttgctt tccttcactc gctttggcgc cactctcctt
      661 gagcgactgg ttcagtgaac cgcctgttgc ttgcattgca ggccacaaac cgaacgcaat
      721 accagtgagc attgaaacta ggaaagtgaa tccgagaagg cgtaaatcga cactagcttc
      781 gttgaggcgc gggatgtcgc ccggactgag tttgatgaat agatcgacta cccaaactga
      841 tagcgcaagt ccgactattc caccggcaag gctgagcaac aaactttccg ttaacagttg
      901 acgaaccagg cgccaccgat ttgcaccgac cgctctccga atcgcaaatt ctcgctcccg
      961 ctgagtagca cgcgccaaca acaagctagc gacatttgtg caagctatta gcaagacgag
     1021 cgcgaccgcg cctaacaaaa ttgagaggag agtttttacg tttccgacta cctgggtgtg
     1081 aagggagatc acattggatc ccagtccacc gtttgtcttg ggaaaatctt gctcaagtct
     1141 ccgggcaatg cccgccattt ctgactgagc ttgcgccagg gttgcgttcg gtttcaggcg
     1201 cgccaccaca ttcatgaagt gagcatcgcg ttcatgactc cagtcgttat cgggaaactg
     1261 agaaatcaaa ctcatcgata ctgcgttgcg atccttgcca agaacccata ggtcggactg
     1321 caccggaaac ttgaaacccg cgggcatcac accaacaact gtataagcag cttcgtcgat
     1381 agttatcgtt ttgccgatga cagttttgtc gccgccaaat ctccgttgcc acagaccatc
     1441 tccgatgatc accagccggc gatcctgatg atcgtcgtcg tctggctgga acgtgcgacc
     1501 aagttgcgca gccacgccaa gggtactcat caagtttgac gtgacagtcg aaccgtttac
     1561 tcgttcaggt tcgccgtttc cggttagatt gaagttgccg tagaacgtgg cagccatgtc
     1621 gctgaatgaa ctgttttgtg cacgccagtc gttaaagttt ccaggcgctg ccgatcgttt
     1681 gtcgttggcc gcgaccgttt cccaaaccat gactagtcga tcgggatcgg cgtaaggcag
     1741 tggtcgcaag acaactgcat tcagcacgct gaagatggcg gtgtttgcac caatacctag
     1801 cgcaagggtc aagacggcga caacagtaac gacaggattc ttgaggagaa tgcggagggc
     1861 gtatcttaaa tcgtggaaca tgctctttag tctttctttg ccggttccct ttagtagcta
     1921 ctttcatttc aagggcgtgc tcttctagga ccgcaggcgt cctcgcctgc aaacgtcgcc
     1981 aaccgtgtag ccttagccg
//
LOCUS       DATCGC010001990         1149 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_363603, whole genome shotgun sequence.
ACCESSION   DATCGC010001990 DATCGC010000000
VERSION     DATCGC010001990.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1149
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_363603"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1094)
                     /locus_tag="VIJ87_18965"
     CDS             complement(<1..1094)
                     /locus_tag="VIJ87_18965"
                     /inference="COORDINATES: protein motif:HMM:NF033551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1182 family transposase"
                     /protein_id="HEY5446497.1"
                     /translation="MSYVEGESREQRILFPEILDDYISEDNLVRFIDAFVDGLEMEEL
                     GFEGTAPKEIGRPPYDPRDLLKFYIYGYLNRVRTGRRLERECQRNVELMWLMRKLRPD
                     FKTITDFRKDNRKAFRGVFRQFVLLCKGLGLVGGELVAVDGSKFKAVNSGQRNFSAKK
                     LEERLKKIDEKVERYLDEIERGDEEGKESEISAAELKQKIEKLKERKGRYKELLKELG
                     ASGQSQVSLTDPQSRAMALTPRGEVSYNVQTVVDRKHHLIVEQDVTNEGLDNHQLFSM
                     AQKTKQMLGQDELQVVADMGYYNHEELKRCEEAGITTYVSKPLVSKNTARGLFGKEKF
                     VYEAHGDCYRCPAKERLDFRFETQEGDKKFR"
BASE COUNT          235 a          382 c          216 g          316 t
ORIGIN      
        1 cgaaacttct tatcgccctc ctgagtctca aaacgaaaat caagtcgctc tttagccgga
       61 cagcgataac agtccccgtg cgcttcataa acaaatttct ctttgccaaa taaccctcgc
      121 gcggtgttct tcgataccag cggtttggag acatacgttg tgatccccgc ctcctcgcag
      181 cgctttagct cttcgtggtt gtagtagccc atgtcggcca ccacttggag ttcgtcttga
      241 ccgagcatct gcttagtctt ttgcgccatc gaaaaaagct gatgattatc cagcccctca
      301 ttggtgacgt cctgttccac gatcaggtga tgctttcggt ccaccaccgt ctgtacgttg
      361 tagctcacct ctccccgggg cgtgagcgcc atcgcccgac tctgtggatc ggtaagcgac
      421 acctggcttt ggccactggc cccgagttct tttaacagct ctttatatcg acctttgcgc
      481 tcctttagct tttcgatctt ctgcttaagt tcggctgcgc tgatctcact ctctttccct
      541 tcctcatctc cccgctcaat ctcatcgaga tagcgctcga ccttctcgtc gatcttcttc
      601 agtcgctcct caagcttctt tgcactaaag tttcgctgcc cgctgttgac cgccttaaat
      661 ttactcccgt ccaccgccac taactccccg cctactaacc ccaacccttt acataacaag
      721 acaaactgcc taaacactcc ccgaaacgct ttgcgattgt ctttgcgaaa atcggtaatc
      781 gtcttaaaat ccggccgaag cttgcgcatc aaccacatca gttccacatt tctctgacac
      841 tcccgctcaa gccgccgccc cgttctcacc cggttgaggt acccatatat atagaacttc
      901 agtaaatccc gtggatcata gggcgggcgc cctatctcct tgggtgctgt gccctcaaac
      961 cccagctcct ccatctctag cccatcgacg aacgcatcga tgaatcgcac cagattatcc
     1021 tcgctaatgt aatcgtcgag aatctcgggg aataaaatcc gctgctctcg gctctctcct
     1081 tcaacgtagc tcatcgatca acttcacctc ccgccaatct taatgcccct aatttactcc
     1141 tctctggat
//
LOCUS       DATCGC010001991         1703 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_95900, whole genome shotgun sequence.
ACCESSION   DATCGC010001991 DATCGC010000000
VERSION     DATCGC010001991.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1703)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1703)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1703
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95900"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1657)
                     /locus_tag="VIJ87_18970"
     CDS             complement(<1..1657)
                     /locus_tag="VIJ87_18970"
                     /inference="COORDINATES: protein motif:HMM:TIGR01701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FdhF/YdeP family oxidoreductase"
                     /protein_id="HEY5446498.1"
                     /translation="MPDKTLPSALPPEEKTGPDLGPRSKVAGGIPAIIETLRTTTSEV
                     GLIRGIRTLLQLNQQAGIDCPGCAWPEPDQERSHFEFCENGAKHIADEATTNRITPQF
                     FKKWSVNDLAQQSDEWLGKQGRLTQPVILRRGATHYEPITWGEVFELLAGELNALNYP
                     DQAIFYTSGRTSNEAAFLYQLFVRQFGTNNLPDCSNMCHESSGSALSETIGIGKGTVR
                     LQDFDHAQAIFVIGQNPGTNHPRMLTALQRAKRNGCKLVHINPLPEAGMVRFKHPQEL
                     TRLIGAGTPLADLFLQVKINGDVALLKGIMKALFAEEERAPHRVLDHPFISRYTSGFD
                     EFAAALSQINWADIVEQCGVSQALLEEAARIFIDSERTIFCWAMGLTQHQNAVANIQE
                     IVNLMLLRGQIGMEGAGLCPVRGHSNVQGDRTMGIWERPSVAFLDRLGSEFGFEPPRN
                     HGFDTVNAIRAMHEGQAKIFFALGGNFLSATPDTDFTASALRRCRLTAHVSTKLNRAH
                     LITGDRALILPCLGRTEIDSQARGPQIVSTENSMGVVQMSRGTL"
BASE COUNT          402 a          457 c          448 g          396 t
ORIGIN      
        1 cgagtgtacc gcgcgacatc tgaacaacac ccatggagtt ttcagttgaa acaatctgtg
       61 gcccacgggc ctgactgtcg atttccgttc gacccaggca cggaagaatg agggcccgat
      121 cgccagtaat caaatgagcg cgattcagtt tagttgaaac atgtgcagtt agacgacaac
      181 gcctcaaggc agatgcggtg aaatcagtgt cgggggtagc cgaaagaaag tttccgccaa
      241 gtgcgaagaa gatcttcgcc tgaccttcgt gcatcgcacg gatcgcgttg accgtgtcga
      301 agccatgatt gcgaggtggt tcgaaaccaa attctgaacc gagcctgtcc agaaaagcaa
      361 ctgatggacg ctcccaaata cccatggtgc gatcgccctg gacattgctg tggccccgca
      421 cgggacacaa gcctgctccc tccatcccga tctgaccacg cagcaacatc agattcacga
      481 tctcttgaat atttgcgact gcattctggt gttgagtaag acccatagcc caacagaaaa
      541 tcgttcgctc ggagtcgatg aaaattcgcg cagcttcctc caacaatgct tgtgacacgc
      601 cgcactgctc gacgatgtca gcccaattga tttgactaag cgctgccgca aactcatcaa
      661 agcccgacgt gtaacgacta atgaaggggt gatcgagaac gcgatgaggc gcacgttctt
      721 cttctgcgaa cagggccttc atgattcctt tgagcagagc gacgtcgccg ttgatcttta
      781 cctgcaaaaa cagatcagcg agtggagtgc ccgccccaat cagccttgtc agctcttgcg
      841 gatgtttgaa gcgaaccatg ccggcttctg ggagcggatt gatgtgtacg agcttacaac
      901 cgtttcgctt ggcccgctgt aacgcagtca acatgcgcgg gtgattcgta ccagggttct
      961 gaccgatgac aaagattgcc tgggcgtgat caaaatcttg cagtctgaca gttcccttcc
     1021 cgatcccgat cgtttcgctc aacgccgatc cactcgactc gtgacacatg ttggaacagt
     1081 ccggaagatt gtttgtgccg aattggcgga caaagagctg ataaaggaac gcggcttcgt
     1141 tactcgtccg accagacgtg tagaagatcg cctgatccgg ataattcaaa gcgttcagtt
     1201 cgccggcaag cagttcaaac acttcgcccc aagtgatggg ctcgtagtgt gtcgcaccac
     1261 gccgcaatat cactggttgt gtaagtcgac cctgcttacc caaccactca tccgactgct
     1321 gtgcgagatc gttgacgctc cacttcttga aaaactgcgg agttatgcgg ttggtggtgg
     1381 cttcgtcagc gatgtgcttt gcgccgtttt cacaaaactc aaagtgtgaa cgttcctgat
     1441 ccggttcggg ccatgcacaa ccgggacaat caatgcccgc ttgctgattg agctggagga
     1501 gtgtccgtat cccgcgaatc agacctactt cggaagtggt agttcttaac gtctcgatga
     1561 tcgccggaat acctcctgcg actttactgc gtggtcctag atcagggccg gtcttctctt
     1621 cgggcggtaa cgctgatggc agtgttttat caggcattga agtgctcaag gactcttaca
     1681 aaagattggg tggtaatgca aac
//
LOCUS       DATCGC010001992         1446 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_295857, whole genome shotgun sequence.
ACCESSION   DATCGC010001992 DATCGC010000000
VERSION     DATCGC010001992.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1446)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1446)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1446
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295857"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1286)
                     /locus_tag="VIJ87_18975"
     CDS             complement(<1..1286)
                     /locus_tag="VIJ87_18975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446499.1"
                     /translation="MALIPSRDRAIPALPVRLGASVKQLVVEKQPSNQSSGLAVRDSK
                     TGFTFFNVEGGDYDYNANARSLGIEGGRLLISKEFANALARPSDAGSVVGKISVGAAM
                     QPIEITQVVNGKPKSIMVPPLSQRAGPDTPTLVPGPDIIVGDLPDMVQVGSEGSQVGL
                     GIATTSCNNGDVPVNFYALPNTDHSFFPQNLYRMSGGADNTQRFEQVGQSWIKHTFGA
                     NEDNDCDLGCNTNNCVQFSQLCPGCSDPYLADENGWYQLLGSRAWVNPFTGAFLSNPD
                     PTNHTGHNDIGASHRLRVNISDLNTTLNQGATYFAEAQYDTAQEYQWCQAHPGQCNMY
                     NNASYRQFLVFGTTNFSFSPVGVPGRMHPAITAWTGATVSQQEPDPGNDGIWFMGYKV
                     TNPTPGFYHYEYALFNQNLDRSIQSFSVPVPPGVSI"
BASE COUNT          333 a          370 c          407 g          336 t
ORIGIN      
        1 ctgatgctaa ctcccggcgg cacaggtacg ctaaaggatt gaatgctgcg atcgagattc
       61 tggttgaaca acgcgtactc atagtgatag aagcccggag taggattggt taccttgtag
      121 cccataaacc agatcccatc atttcccgga tcaggctcct gctggcttac cgtcgcccct
      181 gtccaagccg tgatggcagg gtgcattctc ccgggcacgc caacaggcga aaagctgaag
      241 ttcgttgtac cgaaaacaag gaactgacgg taggaagcgt tgttatacat gttgcactgc
      301 ccgggatggg cctgacacca ctggtactcc tgggccgtgt cgtattgcgc ttccgcgaaa
      361 taggttgcgc cttgattgag cgttgtgttg agatcactaa tattaacgcg aaggcggtgc
      421 gatgcgccaa tgtcgttgtg gccggtgtgg ttggttggat ctggattaga taggaaagct
      481 ccggtgaaag gattgaccca cgcgcgtgaa ccaagcagct ggtaccatcc gttctcgtcg
      541 gcaagatacg gatcggaaca gcccggacaa agctgtgaga actgaacgca attatttgtg
      601 ttgcagccaa ggtcgcagtc gttgtcttcg tttgcgccga acgtgtgttt gatccaagac
      661 tgaccaactt gttcgaaccg ctgcgtgttg tccgcgccac cgctcatccg ataaagattc
      721 tgcggaaaga acgaatgatc cgtgtttggt agtgcgtaaa agttgaccgg tacgtcgcca
      781 ttgttgcagg aagtcgtcgc tatccccagg ccgacctgtg atccctcgct cccgacttgg
      841 accatatcgg gcagatcccc aacgatgata tcgggtccag ggaccagggt aggcgtatcc
      901 ggaccggcac gttgactcaa tgggggcacc ataattgact taggcttgcc gttcaccact
      961 tgcgtgatct cgataggctg catcgctgcg ccgactgaga tttttccaac gactgagcca
     1021 gcgtccgatg ggcgagcgag cgcgtttgca aactctttcg aaataagaag ccggccacct
     1081 tcaatgccaa gcgaccgtgc gttggcgttg taatcgtaat ctcctccttc aacattgaaa
     1141 aaagtgaaac ctgtcttgct gtcgcgtacg gcaagaccgg aagattgatt cgacggttgt
     1201 ttttcgacta cgagttgttt gacagacgcg cctaatcgca cagggagtgc cggaatcgcg
     1261 cgatcgcggg acggtatcaa ggccattgag cccggcttaa ccccacgcag cagatcatta
     1321 aaaacgagaa tgggaaagaa ggaattggct gcggcggaaa attgcagagt gactggcctt
     1381 gccaccaaag aattgcttcc attcaatccg ttgagatcga gttgcatcgt tacgctcgcg
     1441 ttttcc
//
LOCUS       DATCGC010001993         1423 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_260104, whole genome shotgun sequence.
ACCESSION   DATCGC010001993 DATCGC010000000
VERSION     DATCGC010001993.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1423)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1423)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1423
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_260104"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..539
                     /locus_tag="VIJ87_18980"
     CDS             <1..539
                     /locus_tag="VIJ87_18980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446500.1"
                     /translation="CSHRLKSVPLSCILTIVIMKRLLATIAAALLLSSCSNNDNSHTT
                     ATIYIAPPAHQVLVVVSKPVPAIGNPPDVDPSADKTKPLLVFKLENGKTFRVGDEVPI
                     DFSVLNAKLKANGGEFRVRYIIDDDDMKLLDSSDPFWLAGWTPGKHTVRLELIGPDGW
                     PYKNGNANIVTREILVVP"
     gene            complement(607..>1423)
                     /locus_tag="VIJ87_18985"
     CDS             complement(607..>1423)
                     /locus_tag="VIJ87_18985"
                     /inference="COORDINATES: protein motif:HMM:NF025314.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4214 domain-containing protein"
                     /protein_id="HEY5446501.1"
                     /translation="ITDTGSPVREASFNTAFFVRQHYHDFLNREPDAAGLAFWTNQID
                     SCGDAQCRELKKINVSAAFFLSIEFQETGYLVYRNYKAAFGDTNSPNVSVPVPIIRFN
                     EFLPDSQRIGLGVQVGIGNWEQQLESNKVAYFQEFVQRQRFLGAFPLSMTPVQFVDKL
                     NQNSGGVLSQSERDQLVAELIGAPTVTQGRASVLRKVADDSDMKNNEKNRAFVLMQYF
                     GYLRRNPDDPQDTDFRGWEFWLNKLNQFNGNFIDAEMVKAFITSGEYCDRFGK"
BASE COUNT          373 a          365 c          320 g          365 t
ORIGIN      
        1 tttgctcaca cagactgaag tctgtgccac tttcttgtat tcttacaatc gtgattatga
       61 aacgtttgct tgcaaccatc gccgccgcat tgttgctctc gtcgtgctcg aacaacgaca
      121 actcgcacac aacggcaaca atctacatag cgccaccggc acatcaagtt ctggttgtgg
      181 tttctaaacc tgtgccggcc atcggcaatc cccctgacgt cgacccatca gcagacaaaa
      241 caaaaccatt gctcgtcttc aaacttgaaa acggtaaaac gtttcgcgtt ggtgacgagg
      301 tcccaatcga cttctcagtg ctgaacgcta agcttaaagc taacggtggt gaatttcgcg
      361 tgcgttacat catcgacgac gacgatatga agttgctgga tagtagtgat ccgttctggc
      421 tcgccggctg gactccgggc aaacatacag ttcgacttga gcttatcggg ccagacggtt
      481 ggccctacaa gaacggcaac gcgaacatag taacgagaga aattttggtt gttccgtaat
      541 gatctgtagt cacaaatagg acggatgatt cttttacact ccgtcctctc tgtggctttc
      601 cttcagctac tttccaaacc gatcacagta ttcacctgaa gtaataaacg ccttcaccat
      661 ttccgcgtcg atgaagttgc cattgaactg attcaacttg ttcagccaaa actcccaacc
      721 acggaaatcc gtatcctggg ggtcatctgg attgcgacgc agatagccga agtattgcat
      781 caggacaaag gcccgattct tttcattgtt tttcatatct gagtcgtcag ccactttcct
      841 caacacgctt gctcgccctt gagttacggt tggagctcca atcaactcag cgacaagttg
      901 atcacgctcg gactgtgaaa gcacaccacc cgaattttga ttcaacttgt cgacaaattg
      961 tacgggcgtc attgaaagag gaaatgcacc caggaatctt tgacgctgca caaactcctg
     1021 gaagtacgca accttattac tctcgagttg ctgctcccaa tttcctattc caacttgaac
     1081 tccaagacca atgcgttggc tatcaggcag gaattcgtta aatcggatga tcggtacagg
     1141 cactgaaaca tttggcgaat tagtatcgcc aaaggctgct ttgtagttcc gataaacaag
     1201 gtaaccagtc tcctgaaatt caatcgatag gaagaatgca gctgagacat tgatcttctt
     1261 gagttcccgg cattgagcgt ctccgcaaga atcgatttgg ttcgtccaga aggcgagtcc
     1321 cgcagcatcc ggctcacgat tgagaaaatc gtgatagtgc tgtcgaacga agaaggcagt
     1381 attgaaactg gcttcacgaa cgggactgcc ggtatcagtg atg
//
LOCUS       DATCGC010001994         1594 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_228325, whole genome shotgun sequence.
ACCESSION   DATCGC010001994 DATCGC010000000
VERSION     DATCGC010001994.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1594)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1594)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1594
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_228325"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..617
                     /locus_tag="VIJ87_18990"
     CDS             <1..617
                     /locus_tag="VIJ87_18990"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY5446502.1"
                     /translation="EHNLVVISDEVYRELCFATPPTSASVLTSSAGAPVITLESLSKT
                     HLIPGWRAGWMRFTNADKMRELITAITRLASGRLCSPTPPQYAIKPALEGDRSFMTDF
                     VHDLKVRRDFAVSRISQTSGLSCTTPEAAFYLMVKVDNLGDRTDEQFVLEMLEASGVL
                     VVHGSGFGCDPRAGYFRLVYLANEELLSSALNSIRSFIDPHSRV"
     gene            complement(731..>1594)
                     /locus_tag="VIJ87_18995"
     CDS             complement(731..>1594)
                     /locus_tag="VIJ87_18995"
                     /inference="COORDINATES: protein motif:HMM:NF024826.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEY5446503.1"
                     /translation="NSRATAPAPVLEDAHFLATTIDGEVIKARRVVLAPGFKHFAHVP
                     DDLKTKIPDGCFHNTGKHACEHTSEFVDFSAAQNQRYLIIGGRQSAFEWAALLLEAGA
                     SAVHLSHRHPSPAFATAEWSWVNPLVDGMVENPNWFRGLSQVDKDAVSHKLWAEGRLK
                     VEPWLESRLKDDRISVWPETELASCTQLENGELVARLTNGETLTIDKLVLATGYKVDL
                     TRLPYLVAGNLLNKLETRNGYPVLDDHFETSVPGLFITSIPAGQDFGPFFGFTISVRT
                     SAKLICERLGS"
BASE COUNT          367 a          430 c          411 g          386 t
ORIGIN      
        1 cagaacataa cctcgtggtg atctcggacg aagtgtaccg agagttgtgt tttgcgacgc
       61 ctccaacttc agcttctgtg ctgacctcat cagcaggtgc gccggtaatc acgttagaga
      121 gtttgtcgaa gacacacttg atacctggct ggcgtgccgg ctggatgcgt tttactaatg
      181 cggacaagat gcgtgaattg atcacggcaa taactcggct ggcaagcggc agactatgtt
      241 cacctactcc cccgcagtac gcgatcaagc cggcacttga aggggatcga agcttcatga
      301 ctgacttcgt tcacgatctc aaggtgcgtc gtgactttgc agtctcgcgg attagtcaga
      361 cttcgggact atcgtgcaca actcccgaag cggcgttcta cctgatggtc aaggtagaca
      421 accttggtga ccgcaccgat gaacagtttg tactggaaat gttggaagcg agtggcgtgc
      481 tcgtagttca cgggtcagga tttggatgcg atccgcgagc gggatacttt cgtctggttt
      541 atctggctaa cgaagaactg ctgagctcag ccttgaacag tatccgctca ttcattgacc
      601 cgcactcacg cgtttgaatc tttgtcgtaa ctgttcgggt ctccgcgtcc tctgcgtctc
      661 tgtgctctct gcgtcaactt atgcgcggcg tctatgaaac acagagggca cagagaacaa
      721 catacgtcct tcaactcccc aatctctcgc aaatcagttt cgccgatgta cgcacagaaa
      781 tggtgaagcc aaagaaaggg ccaaagtcct ggccggccgg tatgctcgta ataaataatc
      841 ctggaaccga agtttcgaag tgatcatcga gaaccgggta accattccgc gtttcgagtt
      901 tgttaagcag attccccgcc accaaataag gtaaccgcgt gagatccact ttgtaccctg
      961 tcgctaggac aagcttgtcg atcgttagtg tttctccatt cgtcaacctt gcaaccaact
     1021 cgccgttctc aagttgagta caactggcga gttcagtttc tggccaaacg ctgatccggt
     1081 cgtctttaag gcgagattcc aaccatggct cgactttgag tcgtccttcg gcccaaagct
     1141 tatgactcac cgcatcttta tctacttgcg acagcccgcg aaaccaattt gggttttcga
     1201 ccatgccatc aactaacgga ttgacccacg accattcggc cgtcgcgaag gcaggactag
     1261 gatgccggtg tgaaagatga actgcggatg cgcccgcttc gagcagaagc gccgcccatt
     1321 caaatgcgct ctgtcgcccg ccaattatca agtagcgttg gttctgggcc gcactgaaat
     1381 cgacgaactc agaagtgtgt tcacatgcat gcttacctgt gttgtggaaa caaccgtctg
     1441 gaatcttcgt cttaagatcg tcgggcacat gcgcgaaatg tttgaaacca ggcgcgagca
     1501 caacgcgacg cgccttgata acctcaccgt cgatggtcgt tgccagaaag tgcgcgtcct
     1561 ccagtacagg tgcaggtgca gtagcccgac tgtt
//
LOCUS       DATCGC010001995         1403 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_228334, whole genome shotgun sequence.
ACCESSION   DATCGC010001995 DATCGC010000000
VERSION     DATCGC010001995.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1403)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1403)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1403
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_228334"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..730)
                     /locus_tag="VIJ87_19000"
     CDS             complement(<1..730)
                     /locus_tag="VIJ87_19000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446504.1"
                     /translation="MAVIDNVTVRLTRTDERDSIQCMKVVLPSLVLLAAVSLSGAEQS
                     DPRFEQFMERSRKIFETNHMVVDLRLSSYDNKIPPAECHYDRYFRKVERIRLPDGDTF
                     ARKEGGKWLEPDDWGESGKPVNSSRSNELNVLAGYAVIPLESKGENRDKSQGATVVRL
                     IDQHTDEEGDEELAFETGRENQTNVNYPTYTFLRYKNASPDDVVLYKFSGPIYSQGGS
                     KVQLDARYGYLIAVKMNVNVVTPPA"
     gene            complement(764..>1403)
                     /locus_tag="VIJ87_19005"
     CDS             complement(764..>1403)
                     /locus_tag="VIJ87_19005"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HEY5446505.1"
                     /translation="LVGGHYDSVFGSPGANDNGTGAAATLALARRFATAKPKHTLRFV
                     AFVNEEPPYFLSGEMGSLIYARRCKEQGNQISAMISLETIGYFSDSPHSQTYPSPGLG
                     VFYPKVGNFIGFVSNVKSRALLRRVIALFRRHSKIPSEGASLPSFIPGVSWSDQWSFW
                     QQGYPAIMVTDTAPFRYPYYHSSNDTPDKLDYDRFTLVVSGMKKVIEELDKL"
BASE COUNT          329 a          384 c          360 g          330 t
ORIGIN      
        1 tagccggtgg agtaacaaca tttacgttca ttttgacagc aatcaggtaa ccgtagcgag
       61 catccaactg gaccttactg ccaccttggg aatagatcgg gccggagaat ttataaagca
      121 cgacgtcgtc gggactcgca tttttgtatc gcaggaatgt gtaggtaggg taattcacat
      181 tggtttggtt ctcgcggccc gtttcgaagg ccagttcttc gtctccttct tcgtcggtgt
      241 gctgatcgat caacctaacg acagttgctc cctgactctt atcgcgattc tcacctttgc
      301 tctcaagagg aataacagcg tagccagcca acacattcaa ctcgttcgaa cgcgagctat
      361 tcacgggttt acccgattcg ccccagtcgt ccggctcgag ccatttccct ccttccttcc
      421 tcgcaaacgt atcgccatca ggtaatcgaa tgcgttccac tttcctgaag tagcgatcat
      481 aatgacactc cgcaggtgga atcttgttgt cgtatgacga caaccgcagg tcgaccacca
      541 tgtggttggt ctcaaaaatc tttcgcgatc gttccatgaa ctgctcaaaa cggggatcgc
      601 tttgttctgc gccggacagc gaaacagcgg ccaacagcac gagcgaaggt aagaccacct
      661 tcatgcattg aattgaatcg cgctcatccg tacgagtcaa tcttactgta acgttgtcta
      721 tgaccgccaa attcctttgg ctcagcgcgg tcaacgcccc acgttacaac ttgtccagct
      781 cctcgatcac tttcttcatg ccgctgacca ccagcgtgaa acgatcgtaa tcaagtttgt
      841 cgggggtatc attggacgag tgatagtacg ggtaacgaaa cggcgcagtg tcggtgacca
      901 tgatggccgg gtagccttgc tgccagaatg accattggtc cgaccaactc acgccgggga
      961 tgaacgaggg cagcgaggcg ccttcagatg gaatttttga gtgtctacgg aacaacgcga
     1021 tgacccggcg cagcaacgcg cgtgacttca cgttgctaac gaaaccgata aagttgccga
     1081 ccttcggata aaacacgcca agacctggcg acggatatgt ttgcgagtgc ggggagtcgg
     1141 aaaagtaacc gatggtctcc aggctgatca tcgcagagat ctggtttcct tgttccttac
     1201 atctgcgggc atatatcaga ctgcccattt cacctgacaa aaaataaggc ggctcctcat
     1261 tcacgaacgc gacaaagcgt aaagtgtgct tcggtttcgc ggtcgcgaat cgccgggcaa
     1321 gcgcaagcgt tgccgcggca ccggtgccgt tgtcgtttgc gccaggcgag ccgaagactg
     1381 aatcataatg gccgccgacc aag
//
LOCUS       DATCGC010001996         1091 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_295924, whole genome shotgun sequence.
ACCESSION   DATCGC010001996 DATCGC010000000
VERSION     DATCGC010001996.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1091)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1091)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1091
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295924"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..759
                     /locus_tag="VIJ87_19010"
     CDS             <1..759
                     /locus_tag="VIJ87_19010"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY5446506.1"
                     /translation="CFRKRTGFRKHSELWALDDVSFSVAEGETYGLLGPNGSGKSSLI
                     RVLSTLLIADSGEVRMRGLSLPDEQEQVRRIIGRVSVDAAFYKKLSARENLLYTALLY
                     GQKASDAERRAMRILEQLGMENSKFSTPLEEMSRGMQQKISIARALVLNPPLLLLDEP
                     TTGLDPKSRRDVQTFLENLREREGTTILLTTHDMAEAERLCARIGFLAHGKLVAEGTT
                     AELMRTANATTLDDAFIKLTGEELVAEELVAVEE"
     gene            762..>1091
                     /locus_tag="VIJ87_19015"
     CDS             762..>1091
                     /locus_tag="VIJ87_19015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446507.1"
                     /translation="METTMRQTWAFLFRGYHLTRRYIGWVVVFNFYAVVTSATVALIG
                     VAAGNYQLTLTLVVGALLWNYLSWLYQEISMSIAYERWEGTLEYTFMAPVSRLVHLFG
                     VSLYSLIN"
BASE COUNT          255 a          277 c          301 g          258 t
ORIGIN      
        1 tgctttcgca agcgtactgg ctttcgcaaa cactccgagc tctgggctct cgacgatgtc
       61 tcgtttagcg ttgccgaagg cgagacatat gggctgcttg ggccgaatgg ttccggcaag
      121 tcgagcttaa tccgcgtcct ttcaactttg ctgattgccg atagtggtga ggttcggatg
      181 cgcggactct ctctgcctga tgagcaggaa caagtgaggc gaatcatcgg acgcgtcagt
      241 gttgatgctg ctttctacaa gaaactatcg gcgcgagaaa acctgctgta cacggccttg
      301 ctctacggtc aaaaagcgtc cgatgcagaa cgacgagcaa tgagaattct agaacagctt
      361 ggcatggaga actcgaagtt ctcaaccccc ctggaagaga tgagccgagg tatgcagcag
      421 aagataagta ttgcgcgggc gctggtgctt aacccgccgc tactacttct cgacgagccg
      481 acaactggtc tcgatccgaa aagtcgtcgc gatgtccaga cgtttcttga gaatcttcgt
      541 gagcgcgaag gaaccacgat tcttctcacg acgcacgaca tggctgaggc agaaagactc
      601 tgcgctcgaa tcggtttcct ggcgcacgga aaacttgtgg ctgaaggaac cactgccgag
      661 ctaatgcgaa ctgcaaacgc aacaactctt gatgacgcat tcatcaagtt aaccggcgaa
      721 gaactcgtag ccgaagaact cgtcgccgtg gaggaatgac aatggaaact acgatgcggc
      781 aaacctgggc cttcttgttc agaggttacc acctgacccg ccgctacatt ggctgggtcg
      841 tcgtgttcaa cttttatgcg gttgtgactt ctgcgacggt ggcgttaatc ggagttgcag
      901 ctggtaacta ccaactgaca cttacactcg ttgtcggcgc actgctctgg aactaccttt
      961 cgtggctgta tcaggaaata tcgatgtcga tcgcctatga acgctgggaa ggaacacttg
     1021 agtacacgtt catggctcca gtgtcgcggt tggtgcattt gttcggggtc agtctgtatt
     1081 cattaatcaa c
//
LOCUS       DATCGC010001997         1700 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_31119, whole genome shotgun sequence.
ACCESSION   DATCGC010001997 DATCGC010000000
VERSION     DATCGC010001997.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1700)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1700)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1700
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31119"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            153..1664
                     /locus_tag="VIJ87_19020"
     CDS             153..1664
                     /locus_tag="VIJ87_19020"
                     /inference="COORDINATES: protein motif:HMM:NF012640.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HEY5446508.1"
                     /translation="MLDLQPATFEEFEKQARHGNVVPVVRSVLADLHTPVGTFMRIAG
                     NSPYAFLLESVEGGERIARYSFLGADPEMIVRGRGMHTVVERNGKTEIFHGLATEWVR
                     DYFRERVLAQRPGLVPFAGGAVGYIGYDAAQWFEPALRDDRTQALDAPVDAVWMFFRT
                     VIAFDRVKQRMEIVSIVLTEAAEGSHEKLRELYDAAVASTWQMEQKIFEGGLAQAKPR
                     DSKVKSPDIGLQSNWTRRDFEEGVRRVQDYIKAGDCYQAVLSQRFSAKFKGEALAIYR
                     ALRAINPSPYMFFLRMGDETVIGASPEMLVRCHGQRLDYRPIAGTRKRGATETEDWML
                     SEDLKTDEKEVAEHMMLVDLGRNDLGRVSDYGSVKVEQLMTIERYSHVQHMETTLRSR
                     LRDGLDRFDALASCFPAGTVTGAPKIRAMEIIRELEPDPRGIYAGSVLYMDYADNLDS
                     CIAIRTMVLRGEDATVQAGAGIVADSVPEHEYAETVNKARAMFRAIEMAERGL"
BASE COUNT          404 a          408 c          495 g          393 t
ORIGIN      
        1 ttctctgtgc cctctgcgtc tctgtgccct ctgcgtttca tagaggctgg gaataagtta
       61 acgcagaggt cactgagacg cagagagcac agagagactg aattaggtct tccgaaaact
      121 ttgtcaaaga aacaaagaca agacgaaatg acatgctaga tcttcaacca gcgacatttg
      181 aagaatttga gaagcaggcg cgccacggaa acgtggtacc cgtcgttcgt tcagtgcttg
      241 ctgatcttca cacgcccgtt ggcaccttca tgcgtatcgc cggcaattca ccgtacgcat
      301 ttctgcttga gtcagttgaa ggaggcgaac gaatcgcgcg ctactccttc cttggcgccg
      361 atccggaaat gattgttcgt ggccgtggga tgcatacagt agtggagcga aacggtaaga
      421 cggaaatctt tcacggtttg gccactgagt gggtgcgtga ttattttcgt gaacgtgtcc
      481 tggcgcaacg cccgggcctt gttccttttg ccgggggcgc cgttgggtac attggctacg
      541 acgcagctca atggtttgag ccagcgcttc gtgacgatcg cacccaggca ctcgacgcac
      601 cagtcgacgc agtctggatg tttttccgca cggtcatagc tttcgaccga gtcaagcagc
      661 gaatggagat cgtgtcgata gttctgactg aagcagcgga gggcagtcat gagaagttgc
      721 gcgagctgta cgacgctgct gttgccagca cgtggcaaat ggaacagaag atctttgaag
      781 gtggtcttgc acaagcaaaa cctcgcgatt caaaagtgaa atcaccggac attggtcttc
      841 aatcgaattg gacccgacgt gactttgaag aaggtgttcg tcgagtgcaa gactacatca
      901 aggccggcga ttgttatcag gcagtacttt cgcaacggtt ttcggcgaag ttcaaaggtg
      961 aagctttagc aatctatcga gcgctgcgcg cgatcaatcc gtcaccctac atgttctttt
     1021 tgcgaatggg ggacgaaaca gttattggcg catcacccga gatgcttgtg cggtgccatg
     1081 gtcaacgact cgactatcgc ccgattgctg gtacaagaaa acgaggagcc actgaaactg
     1141 aagactggat gctcagtgaa gacttgaaga cggacgagaa agaagtcgcg gagcacatga
     1201 tgttggttga cctcggtcgc aacgacctgg gacgtgtgtc tgactacggg tcagtgaagg
     1261 ttgaacagtt gatgactatt gagcggtatt ctcatgtgca gcatatggag actactctcc
     1321 gctcgcgact cagagatgga ctggataggt tcgacgccct ggcttcgtgc ttcccggccg
     1381 gcaccgttac cggcgcgcca aagattcgtg cgatggagat cattcgtgaa ctggagcccg
     1441 acccgcgtgg tatctatgcg ggctcagtgt tgtacatgga ctacgcagac aatcttgatt
     1501 cgtgtatcgc gatcagaacg atggtactgc gaggcgaaga cgcgactgtc caggccggcg
     1561 ccgggatcgt cgctgattca gttccggagc atgaatatgc tgaaacagtt aataaggctc
     1621 gcgcaatgtt cagagcgatc gagatggcag agcgaggact gtagtgatcc acattagtag
     1681 tatcactgta ctaatgggcg
//
LOCUS       DATCGC010001998         2247 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_62315, whole genome shotgun sequence.
ACCESSION   DATCGC010001998 DATCGC010000000
VERSION     DATCGC010001998.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2247)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2247)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2247
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62315"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            408..659
                     /locus_tag="VIJ87_19025"
     CDS             408..659
                     /locus_tag="VIJ87_19025"
                     /inference="COORDINATES: protein motif:HMM:NF019575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEY5446509.1"
                     /translation="MRLGGYESDGIPSYAQRERGIISSIPPLNQKGFTLVEIMIVVAI
                     IALLAAIAVPGFMRARKRSQATRILNDLRIIDSAVDQLR"
     gene            877..1290
                     /locus_tag="VIJ87_19030"
     CDS             877..1290
                     /locus_tag="VIJ87_19030"
                     /inference="COORDINATES: protein motif:HMM:NF024212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEY5446510.1"
                     /translation="MKKSLQAKDYAALGAFRHAMRKLLRFSKELVATKAKLTTEQYDA
                     LLAIKGSSGANGVTVGEISEQLQVKHHTAVSLLDRLEARKLATRKRATADKRNVNVQL
                     TKTGASLLARLAAIHHRELQQRTPEIIDALRRLRE"
     gene            complement(1317..>2247)
                     /locus_tag="VIJ87_19035"
     CDS             complement(1317..>2247)
                     /locus_tag="VIJ87_19035"
                     /inference="COORDINATES: protein motif:HMM:NF024801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glutathione S-transferase C-terminal
                     domain-containing protein"
                     /protein_id="HEY5446511.1"
                     /translation="ADAFRDWISRDGTTGYPAVADRYHLYISLACPWASRTLIARKLL
                     GLEKVIGLTVVDPVRDERGWAFRDPDSDSNEEASSHEPFASTDPINGFHFLTEAYQLT
                     DPNFDGRVTVPVLWDKVTKKIVNNCEDDICRMFNDAFRGLAQNKEIDLFPQDIAAEQE
                     KLSDFIYDKINNGVYKAGFTTRQHVYERACKQLFDALDQVEERLAKSRYLFGTRIVET
                     DWRLFCTLIRFDVVYYIHFKCSLRRILDYHNLQGYLIDLYQHDGIAETVNFDHIKRHY
                     YMTHRAINPSRIVPIGPILDLTREHGRARLDAG"
BASE COUNT          581 a          589 c          595 g          482 t
ORIGIN      
        1 caggagccgt tgcgttggca cgatgacgag ttcatccaca tacgggatga cgtaggtcaa
       61 accgggatcc tcgattccgg acaacgcgcc gaagcgaagc ttgacccctt cggaattcgt
      121 tggaattgaa cgaaacccga acaggagtga gaaaagggtc agtgctattc ctacacaggc
      181 gataataccc agcacaaacc gcactggtct gatgccaaag ctgggagagg cgggccccga
      241 ggagcgaacg atttgcattc ctggattttg actatggggc ggtcaagcag gcacggcaag
      301 ttattccccg ccgcgcccag aggtttgaat cgaatgtgga ctaatcgggg aaacaacgtc
      361 cgatctcaat ctgaacgatg catctaagcg aaagaagaat cgctaaaatg agactcggcg
      421 ggtacgagag cgatggtatt ccatcttacg cacagcgcga gcgagggatc atatcgagca
      481 tcccaccact aaaccaaaaa ggattcactc tcgttgagat catgattgtt gtcgcaatca
      541 ttgccttgct tgcggccatc gcagtgcccg gattcatgcg cgcacgcaag cgctcacagg
      601 ccacccgtat tttgaatgat ttacggataa ttgactcagc ggtggaccag ctacgttaag
      661 caaggttctc ccctatacaa cacaggcaat agtatcttcg ggacgtcgta tggttcacag
      721 acggtagatc agcttccaca agtctctaca agtgattaca acgtattgtc tgacgtggct
      781 gggacaggct tctggtcacc ctacggacct taagaaaatc ggggttcgtg cccagggatt
      841 ggttctacga ggaaacgaac gccagaaagc ccgacggtga agaaatctct ccaggcaaag
      901 gactatgctg cgctcggtgc cttccgacat gcgatgcgga agcttcttcg cttcagtaag
      961 gaactggtcg ccaccaaggc aaaactgacg acggaacaat atgacgctct tctcgcgatc
     1021 aaaggtagtt cgggcgccaa tggcgtgacg gttggagaga taagcgagca gctccaggta
     1081 aagcatcaca ctgccgttag tcttctcgac agattggaag cacgaaagtt agccaccagg
     1141 aagcgggcca ccgcggacaa acgcaacgtc aacgtgcaat tgacgaagac tggcgcttct
     1201 ctccttgcgc gtttggccgc gattcatcac cgcgaactcc agcagcgcac tcccgaaata
     1261 atcgacgcgc tgcggcgatt acgagaataa agcagacaca acatgcgaga cgcgcgttac
     1321 ccagcatcga gcctggcccg tccatgctct cgagtgagat caaggattgg gccgattgga
     1381 acaatacgac tcggattaat cgccctatgc gtcatgtagt aatgccgctt gatgtgatcg
     1441 aaattcaccg tctcggcaat gccatcatgc tggtataagt cgatcagata tccctggagg
     1501 ttgtgatagt cgaggatacg ccgcagactg cacttgaaat ggatgtagta aacgacatca
     1561 aatcgaatga gagtgcaaaa caaccgccaa tcagtctcga ctattctcgt tccgaataaa
     1621 taacgactct tagccagccg ctcctccact tgatcaaggg catcgaatag ttgtttgcaa
     1681 gcccgttcgt aaacatgttg cctggtggtg aagccagcct tgtaaacgcc gttgttgatc
     1741 ttgtcgtaaa taaagtcgct tagcttctcc tgttccgcgg caatgtcctg tggaaaaaga
     1801 tcgatctcct tattctgtgc caggccacga aaggcatcgt tgaacatgcg gcaaatatcg
     1861 tcttcgcaat tattgacgat ctttttcgtc accttgtccc agagcaccgg gacggtgacg
     1921 cggccatcaa agttcggatc ggtcagctgg tacgcttcgg tgagaaagtg aaacccgtta
     1981 attgggtcgg ttgaggcaaa cggctcgtgg gaactcgcct cttcattaga atcggaatcg
     2041 ggatcgcgaa aagcccatcc acgttcatct cgcaccgggt cgaccactgt caggccgatg
     2101 accttttcca acccgagcag tttacgagca attaacgttc ggctcgccca tggacaagcc
     2161 agtgaaatgt aaaggtggta tcgatcagcc acggccggat aaccggtggt gccatcgcgc
     2221 gagatccagt ctcgaaaggc gtccgcc
//
LOCUS       DATCGC010001999         1754 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_296045, whole genome shotgun sequence.
ACCESSION   DATCGC010001999 DATCGC010000000
VERSION     DATCGC010001999.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1754)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1754)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1754
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_296045"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1754
                     /locus_tag="VIJ87_19040"
     CDS             <1..>1754
                     /locus_tag="VIJ87_19040"
                     /inference="COORDINATES: protein motif:HMM:TIGR03434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5446512.1"
                     /translation="REFGGNENVLQNSLLLNGEKYEVVGVLPAGFSLGYEVVPTVSSV
                     PEPDLFLPLPMSAKEKQEQGNENYNLVARLKPGATIVQAQSELDIATKRLAEQFPDRY
                     PASRRFSFSIKPLLEQVVGDVRRPLFVLLAAVGCVLIIACANVANLLLTRATVREREI
                     AIRSALGAARVRLIRQLLTESVLLSVLGGVVGLVLAYWLLGTLRWFSPTNIPRLPAIR
                     MDGRVLFFTSAIAVLTGILFGMAPALRTSKLNLSEALKEGARNVAGGRHESLRKLLVV
                     SELALSLVLLISAGLLIRSFISVERVNPGFNAQNVLGMRLSVAGTSYKGDRREIFYRE
                     LLERVRRLPGVTSAGIADNLPLSGGIGWGSISIEGYQPSAGQEMIQSDIRVAGVGYFE
                     TLQVPVVKGRLFDEHDTEKSSPVIVIDERMARSYWPNSNPIGSRIKFGSADSEDPWMT
                     VVGVVGSVKQYDLESESRVTMYLPAALGHGSTMYLVARTNVLPSSLVASITSEARSMD
                     PNIPIFDVKTMDQRVSESLGRRRFAMLALGVFAGLALLLAIIGVYGVISYSVAQRTSE
                     LGIRLALGARQIDVLRLV"
BASE COUNT          354 a          431 c          514 g          455 t
ORIGIN      
        1 ccgtgagttt ggaggaaacg agaacgtact ccagaactct ctactactca acggtgagaa
       61 gtatgaagtc gtcggtgtcc tgcccgctgg gttctcactg ggctacgaag tggtgccaac
      121 ggtttcttcg gttcccgagc cggatctttt tttaccttta ccgatgagcg ccaaagagaa
      181 gcaggagcag ggaaatgaga attacaacct ggtagcacga ttgaaacccg gggccacaat
      241 cgttcaagca caaagcgagt tagacatagc aactaaacgg ctggcggaac agtttcccga
      301 tcggtatcca gctagtcgtc gcttcagctt cagcattaag ccgctcctgg aacaagttgt
      361 tggtgacgtt cgtcgaccgc tcttcgtgtt gctggcagca gttggctgcg tgctgatcat
      421 tgcttgcgcg aacgtggcca atcttctgct gacgcgggcc accgtacgcg agcgcgagat
      481 tgcgattcgg agcgcactgg gtgctgcccg ggttcgcctg attcgtcaat tgttgactga
      541 gagtgtgttg ctctcggtgc ttggtggagt tgtcggactc gtgctcgctt actggctgtt
      601 gggtacgttg cgttggttta gcccgaccaa cattcctcgt cttccggcca ttcgtatgga
      661 cggtcgcgta ctgtttttta cctctgcgat tgctgtgttg acagggatct tgttcggtat
      721 ggccccagcg ctacgaacct caaaactgaa tttgagtgaa gctttaaagg aaggcgcgcg
      781 gaatgtcgct ggcggtcgtc acgagagttt gcgaaagctg ctcgtcgtct cagagttggc
      841 gctctccctg gttttgctaa tcagcgctgg tctcttgatt cgcagtttca tcagtgtcga
      901 gcgagtgaat ccgggattca acgctcagaa cgttttggga atgcggttgt ccgtagccgg
      961 cacaagttac aaaggtgatc gccgggagat cttttaccgc gagttgctgg aacgcgtacg
     1021 ccgtttacct ggtgttacat ccgcaggcat tgccgacaac ctgccgctaa gcggaggcat
     1081 tggatgggga agtatttcca ttgagggtta tcaaccctcg gctgggcagg aaatgattca
     1141 gtctgatatt cgcgtggccg gagttggtta cttcgagact ctgcaggtcc ccgttgttaa
     1201 gggtcgttta tttgacgaac acgataccga gaagtcctca ccagtgatcg tcatcgacga
     1261 gaggatggca cgtagttatt ggcccaacag caatcccatt gggagccgaa ttaaatttgg
     1321 gagcgcggat tctgaagacc cctggatgac agtcgtcggg gtagtcggca gcgtcaaaca
     1381 atacgatctg gaaagtgaat cccgcgtgac gatgtacctg ccggcggcac tgggacacgg
     1441 cagtaccatg tatctcgttg cacgaactaa cgtcctacct tcgagcctgg tcgcgagtat
     1501 cacatccgaa gctcgatcaa tggatccaaa tattcccatt tttgatgtca agacgatgga
     1561 ccagcgtgtg tccgaatcac tgggccgtcg gcgttttgcc atgctggcgc taggcgtgtt
     1621 tgctggtttg gccttattgc tggcgatcat tggagtctat ggggtgatct cttattccgt
     1681 ggcgcaacgt accagtgaac taggcattcg tctggcgctt ggagctcgtc agattgatgt
     1741 gttgcgcctc gttt
//
LOCUS       DATCGC010002000         1063 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_96032, whole genome shotgun sequence.
ACCESSION   DATCGC010002000 DATCGC010000000
VERSION     DATCGC010002000.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1063)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1063)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1063
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96032"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            229..>1063
                     /locus_tag="VIJ87_19045"
     CDS             229..>1063
                     /locus_tag="VIJ87_19045"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metalloprotease"
                     /protein_id="HEY5446513.1"
                     /translation="MAQKKTAPVEATPPPTREEFKFGDVDLEILEQSVLLDNKLERDG
                     LVLHDDVANAYVRRIGRSLVPKGLELERVSWNFRVLRDPQPNAFALPNGSIYITTGLI
                     VLVDNESQLAAIIAHELTHVMRRHPYVQNRSNRKKFLTMNIMAAVGAYAPLGIVGAVI
                     MAVTTVAPFILMATIYGYSRDLEREADLKGVDIMISAEYAPEEMVNVMKLLDRDLEGD
                     NIRLFYNDHPSLDERIKYLSAYLGVRSDRVTHQMELNRERAAYFRTMESVMHHDLQLS
                     IG"
BASE COUNT          262 a          267 c          270 g          264 t
ORIGIN      
        1 caaaatcgat ttttaactca gtctctgcct tcccaatttg tttcagttga attagagcga
       61 caacctaaag aagacacgtc ttgactatct agaaaaattc gacgaaagtc agcgctgtcc
      121 cttcacgttc ttagagtttc acctgttatg ctcctccaaa agtctactag tttaatagtc
      181 gcggcactga gcttctgcct tgtgttcacc tcggtttgtc caatcgcgat ggcgcaaaag
      241 aaaactgcgc ctgtcgaagc gactccgccg cctaccaggg aagagttcaa gtttggcgat
      301 gtcgatttag agattcttga gcagtctgtt ctgctcgata acaagcttga gcgtgacggt
      361 ctcgtgctgc atgacgacgt agcgaatgct tatgtgcgtc gcatcggacg gtcgctggtt
      421 ccaaagggtc tcgaactgga gagggtgtcg tggaactttc gcgtgctccg cgacccgcag
      481 ccgaacgcct tcgcactccc gaatggttcg atatacatca ccacaggatt gattgtcctt
      541 gtcgataacg aatcacaact ggccgcaatc atcgcacatg agctgaccca cgttatgcgg
      601 cggcatccgt atgtccagaa tcgcagtaac cgcaaaaaat ttctcacgat gaacatcatg
      661 gcagcagtcg gcgcatatgc accgctcggc atcgttggcg cagttatcat ggcggtgacg
      721 acagttgctc cgtttatttt gatggccacg atctatggtt acagccggga cctcgaacgt
      781 gaagctgatc tcaaaggtgt ggacatcatg atcagcgccg aatacgcgcc agaagaaatg
      841 gtcaacgtga tgaagttgct ggatagagat ctcgaaggcg ataacatcag gttgttctac
      901 aacgaccatc catcacttga tgagcgaatt aagtatctga gtgcgtatct cggcgtgcga
      961 tctgacagag tgacacatca gatggagctg aatcgggaac gcgcagctta cttccggacc
     1021 atggaatcgg tgatgcacca cgatcttcaa ttgtcgattg gcg
//
LOCUS       DATCGC010002001         1052 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_393109, whole genome shotgun sequence.
ACCESSION   DATCGC010002001 DATCGC010000000
VERSION     DATCGC010002001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1052
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_393109"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..229)
                     /locus_tag="VIJ87_19050"
     CDS             complement(<1..229)
                     /locus_tag="VIJ87_19050"
                     /inference="COORDINATES: protein motif:HMM:NF024785.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HEY5446514.1"
                     /translation="MPSTKTQPARGMRDFLPEDVRKREYVIGVIKDVYQRYGFEPLET
                     PAAENIETLMGKYGEEGNQLIFKILKRGVHEG"
     gene            complement(370..>1052)
                     /locus_tag="VIJ87_19055"
     CDS             complement(370..>1052)
                     /locus_tag="VIJ87_19055"
                     /inference="COORDINATES: protein motif:HMM:NF012360.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HEY5446515.1"
                     /translation="ENLPRPINRRDAENAEVAQRKQEPRANAKDPSPKCKLDTPICNS
                     PYVTISKNMIRPFRGVHPQIHPTAYVDVSAQVIGDVHLGEEASIWCNCTVRGDIHHIR
                     LGDRSNVQDNSVIHVRNGMHPTILEHEVTVGHSVTLHGCYIERGCLIGIGSILLDDVR
                     IGADSLVAAGSLVSPGTVIPPRSLVMGFPARVKRELSDEEVAGLEIYWKNYVQYTREY
                     REEMSGML"
BASE COUNT          243 a          289 c          238 g          282 t
ORIGIN      
        1 taccttcatg gacgccgcgt ttcagtatct tgaagatgag ttgattccct tcctcgccat
       61 acttccccat cagcgtttcg atgttctcag ccgcgggtgt ttcgagtggt tcgaaaccgt
      121 aacgttggta cacgtcctta atcacaccaa tgacgtattc gcgcttgcga acatcttccg
      181 gcagaaagtc gcgcatgccg cgcgctggct gagttttagt tgacggcatt tgattcctaa
      241 tcagccacag aaatgcgtac cgataaactc gtaatatacg caagtgaaac ttcgcatctg
      301 cctgtcataa cgcttatgcg tttcatcctt ctaaatctgt ggcccacttc tttggtaact
      361 ctcgacaagc taaagcatac cggacatctc ttcccgatac tcacgggtgt actgcacgta
      421 gttcttccaa tagatttcca gtccggccac ttcctcgtct gacaactctc gtttcactct
      481 tgccggaaac cccatcacca gagacctcgg aggaatcact gtgcccggac tcaccagcga
      541 tccggcagca actaacgaat cagctcctat tcgaacatcg tccagcaaga ttgatccgat
      601 gccgatcaag cagccacgct cgatgtagca accgtgcagg gtaacgctat gtccaacggt
      661 tacctcgtgc tcaagaatcg tgggatgcat tccgttccta acatgaataa ccgaattgtc
      721 ctgaacgttg gaacgatcac ctagtcggat atggtgaatg tcacctcgca ccgtgcagtt
      781 acaccagata gacgcttctt caccaaggtg aacgtcacct ataacctggg cactaacgtc
      841 cacataagcg gtgggatgaa tctgcgggtg aacaccacga aacggtctaa tcatgttttt
      901 ggagatagta acatagggag aattgcagat tggcgtgtcg agtttgcact taggacttgg
      961 gtctttggcg tttgctcttg gttcttgttt tctctgcgca acctcggcgt tctcggcgtc
     1021 tctgcgattt atcggtctcg gcaaattttc ac
//
LOCUS       DATCGC010002002         1123 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_96044, whole genome shotgun sequence.
ACCESSION   DATCGC010002002 DATCGC010000000
VERSION     DATCGC010002002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1123
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96044"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(251..1087)
                     /locus_tag="VIJ87_19060"
     CDS             complement(251..1087)
                     /locus_tag="VIJ87_19060"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY5446516.1"
                     /translation="MSEITLRNIDDAAEMRAVEDLQKEVWGIPDLDVVPLSQLVAAKE
                     AGGILIGAFAGPTLVGFVYGFPAFEDDQLAHHSHMLAVKPAYRKFDLGRRLKLAQREC
                     AIAQGIRLMTWTFDPLQSLNAYLNFTKLGVVANRYLPDFYGEDPSSFLHQTGTDRLWV
                     SWFLKSDRVQRLATGAITEIESVAGFPLVQVDASDSPRRNALSAALADDEASIEIPAD
                     INSVHQLKSESALRWREDTRWAFTEAINAGYVVAGFVRETREKQRLGKYLLRKGNLNE
                     FE"
BASE COUNT          295 a          287 c          260 g          281 t
ORIGIN      
        1 caggaactcg gttggcgggc gcttctgctg tggctggttg tggtgcttct ttacttgtga
       61 gcggtgtctt ctgggggacc tggcccatta cgcataagcc aagcagcaga gcgattatta
      121 ccaatgaaat tgttttcttc acaattagtg ctcctgaagt gtatgtgacg taatcgatga
      181 gatccaaaga cctaaaggaa ctcgtgcaaa aagtgagtca gtaccatgac gcggtagcgt
      241 atggtactga ctactcaaac tcgttcaaat ttccttttct gagcagatac ttcccgagtc
      301 gttgcttctc acgcgtctct cgaacgaatc cagccacgac ataacctgca ttgatcgcct
      361 cagtgaatgc ccaacgagta tcttcgcgcc aacgcaaagc tgattctgat ttcagctggt
      421 gcacagaatt aatgtccgcg ggaatctcga ttgacgcttc atcgtctgca agtgcagctg
      481 acaaggcatt gcgacgcggt gaatcagaag catcaacttg aactaacgga aaaccggcga
      541 cggattcaat ctcggttatg gcaccggttg ccaatctttg cactcgatca ctttttagaa
      601 accacgacac ccacaaacga tcggtgccag tctgatgcag aaagcttgaa ggatcttcac
      661 cgtagaaatc aggcagatat cgatttgcta caacccccaa cttagtgaag tttaaatatg
      721 cgttgagact ttgtaaggga tcgaaagtcc aggtcatcag cctgattccc tgggcaatcg
      781 cacattctcg ctgtgccagt tttagacggc gtcctaaatc aaacttacga taggccggct
      841 tgaccgctag catatgtgag tgatgcgcca gctggtcatc ttcaaaggcc ggaaatccat
      901 aaacgaagcc cactaaagtt ggcccggcaa acgcgcctat caaaatgcct cccgcttctt
      961 tggcagctac aagctgactg agcggcacta catcaaggtc agggataccc cacacttctt
     1021 tttgcagatc ttcaactgct cgcatctccg cagcatcatc aatattgcga agtgtaatct
     1081 cagacatttc agccgcagat gacatgtaga atttcagaag cta
//
LOCUS       DATCGC010002003         1316 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_260252, whole genome shotgun sequence.
ACCESSION   DATCGC010002003 DATCGC010000000
VERSION     DATCGC010002003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1316)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1316)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1316
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_260252"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            170..>1316
                     /locus_tag="VIJ87_19065"
     CDS             170..>1316
                     /locus_tag="VIJ87_19065"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEY5446517.1"
                     /translation="MLYLFQGERVILWIASVLLMSISLYGFFGRLRPTWVSFVLFNLL
                     LLISVELGARSAVKLFFPNKEVSLARRAAWTYDELRKLTGHPFLQFNGISSTTSNQML
                     GWYFSNFNSRQLEGVDSFKASTGNLDIFNNFGFLGRDFAYAKPPGVIRIGALGASTTA
                     DGYPAMLEEYLNARVAAQSNRFEVMNFGHGFYTSAHVLVNFVLNVIDFAPDYIVIHQA
                     ANDEHARASEAEFRGDYSHYLKVFQPPRIWDRYILRVSVPYRALKFYLNPNPEWMFVE
                     AASQIRRKEPQRPLNAPELGVFRRNIETIIDVASARQIKVVLTTMPHSTDERYTHVHY
                     IDQFNEVLRSIAANHDRLLFVDLDKLMTGKDNNVFLDPVHMNDTGKRM"
BASE COUNT          298 a          371 c          306 g          341 t
ORIGIN      
        1 ctccgacctc tgacctctga cctccctagc tgtacccatg aatctagtcg caacccaaac
       61 atcggcagcc gttgaccgga ctatggacgc cttcaggaaa ttcgtcagcg gttacgctct
      121 cataatcagc cttctcatcg caccgccgat attcgagaga ttcttcgcaa tgctgtacct
      181 ctttcaaggt gagagagtga tcctgtggat cgcctcagta cttctgatgt ccatcagcct
      241 ctatggtttc ttcggccgtt tacgcccgac ttgggtttcc ttcgtattgt ttaacctgct
      301 ccttctaatc tcagtagaac tcggtgcgcg ttctgccgtg aagctgttct ttccaaacaa
      361 ggaggtgagt ctagcacgta gggccgcctg gacctatgac gaactccgga aactcactgg
      421 ccatcccttc cttcagttca acggcatatc atcaacaacg agcaaccaga tgctcggctg
      481 gtacttctca aattttaatt cgcgacaact tgagggagtc gattcgttta aagcttccac
      541 cgggaaccta gatatcttca ataacttcgg ctttctcggt cgtgactttg cctacgccaa
      601 gcccccggga gttattcgca ttggcgctct cggcgcgtcg acaactgccg atggttaccc
      661 cgccatgttg gaagaatacc ttaatgccag agttgccgct caatccaacc gattcgaagt
      721 gatgaacttt ggccacggct tctatacgag cgctcatgtt ctcgtgaatt ttgtcttgaa
      781 cgtcattgac tttgcccctg actatattgt cattcaccaa gctgcaaacg atgagcacgc
      841 gcgtgcctcc gaggcggagt tcagaggtga ctattcacat tatctgaagg tctttcagcc
      901 gccgcggatt tgggatagat acatcctccg agtaagcgtt ccctaccggg cgttgaagtt
      961 ttacctgaat ccaaatccgg agtggatgtt cgtagaagcc gcttcgcaga tccgccggaa
     1021 agagcctcaa cgtccgctga atgcgcctga gctcggggtc tttcgacgta acatcgaaac
     1081 catcatcgat gtcgctagtg cgcggcagat caaagtcgtt ctcacgacaa tgccccactc
     1141 gacggatgaa cgttacactc atgtccacta tatcgatcaa ttcaacgaag tgttgaggtc
     1201 catcgccgcg aaccatgatc ggctcctgtt cgtcgatctc gacaagctaa tgaccggaaa
     1261 ggacaataat gtctttctcg atccggttca catgaatgat accgggaagc ggatga
//
LOCUS       DATCGC010002004         1639 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_330228, whole genome shotgun sequence.
ACCESSION   DATCGC010002004 DATCGC010000000
VERSION     DATCGC010002004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1639)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1639
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_330228"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(66..>1639)
                     /locus_tag="VIJ87_19070"
     CDS             complement(66..>1639)
                     /locus_tag="VIJ87_19070"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEY5446518.1"
                     /translation="MSLPSQFSREDMRDWLQAKYSRYKLDVIVALGPDTVDFLSTYEP
                     AAFAEIPVVICGTSPDQLANPKLRSRFTGTWLKFEPQKTLEVALSLFPDTKHVFVVGG
                     STVFDRKITSLTKAAFSTLNTQVEIRYLPEMEMSTLTEQLRQLPSQSVVLYTSFFQDA
                     AGVRFPNATKALPMIAAASNGPAFGMSDTYMGHGIVGGYLMGFERQGKITAQVVSELL
                     DGKKPQEIPIETLPGAYVFDSHELSKWNIAESTLPPESVILFEEPSVWERNKWLWAII
                     LGLSALAAYLLYSRKQLKQAKESQRKLSGRLINAQEQERSRLAREIHDDFSQRLAVMA
                     LQLENIAEEVPLSYKEVHRQLHEVEDSASELGSELHALSYQLHSSTLENLGLVSAITA
                     MCREFTAKNGVKANFTSDKVRENVDPDVALCAFRIVQEALRNVRKHSNAKIASVQLLH
                     EGDKLVVRIRDDGHGFDLSQSNNREGLGIRSMEERTLSIGGNFKIRSEYGRGTTIEAR
                     VPLKQAGSVAKGHLA"
BASE COUNT          373 a          434 c          405 g          427 t
ORIGIN      
        1 gtcggtccgg taaccttgca acaattcgag agccatcttg gagtttcagc cagcctcaga
       61 ttcaatcaag caagatgccc ttttgcgacg gagccagctt gcttgagggg cacgcgggct
      121 tcaatcgtcg tccctcttcc atattcggat cgaatcttga agttgccgcc aatggataga
      181 gtgcgctctt ccatgctcct gatgccgagt ccttcgcggt tgttcgattg cgacaaatcg
      241 aacccatgac cgtcgtctcg gatgcgaacc accaacttgt cgccttcatg caacaactgc
      301 acagacgcta tttttgcgtt gctgtgcttt ctcacattgc gtagcgcctc ttgaacgatc
      361 ctgaaggcgc acaaagccac gtccggatca acgttttcgc gaactttatc agaggtgaaa
      421 ttcgctttca ccccgttttt ggcggtaaat tcgcggcaca ttgcagtgat agcagaaacg
      481 agtccaagat tttcgagagt agatgaatgc aattggtaag acagggcatg aagttcggag
      541 cccagttcgc tcgctgaatc ttcgacttca tggagctgtc gatggacttc tttatacgac
      601 aagggcactt cttcggcaat gttctcgagt tgtagcgcca tgaccgccag tctctgacta
      661 aagtcatcgt gaatttcgcg cgccaaccgg ctacgctcct gctcctgtgc gtttatcagc
      721 cggccgctga gttttctttg actctctttg gcctgcttca attgctttcg actgtaaagc
      781 agatatgctg cgagtgctga caggcccaag atgattgccc agagccattt gttgcgttcc
      841 caaacactcg gctcctcaaa caggatgaca ctttccggag gaagagtgct ctccgctata
      901 ttccacttac tcagttcatg agagtcgaag acatacgcgc caggaagagt ctcgattgga
      961 atttcttgtg gctttttgcc gtccaacagt tctgagacca cctgggcggt tatcttcccc
     1021 tgacgctcaa aacccatcag gtaacctcca acaatcccgt gccccatata ggtatctgac
     1081 atgccaaaag caggaccgtt ggaagccgcg gcgatcattg gaagtgcctt ggtggcattc
     1141 ggaaaccgca ctcccgctgc atcctgaaag aaagatgtgt agagcacaac ggactggctg
     1201 ggcaactgcc gcaattgttc tgttaacgtg ctcatctcca tttcaggaag atagcgaatc
     1261 tccacttgtg tgttgagggt gctgaacgcg gctttcgtta acgaggttat ctttctgtca
     1321 aaaacagtgc tgccgcctac gacgaaaacg tgcttggtat cggggaagag actcaacgcc
     1381 acttcgagcg tcttttgggg ttcaaatttc aaccacgttc ctgtaaatcg tgagcggagt
     1441 tttggattgg ccagttgatc tgggctcgtc ccgcaaatga ccacggggat ttctgcgaat
     1501 gcagccggtt cataagttga aagaaaatcg accgtgtcgg ggcccaacgc tacgatcacg
     1561 tccaatttgt accggctata tttcgcctgt agccaatctc gcatatcctc gcgcgaaaat
     1621 tgacttggta atgacatta
//
LOCUS       DATCGC010002005         1831 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_128540, whole genome shotgun sequence.
ACCESSION   DATCGC010002005 DATCGC010000000
VERSION     DATCGC010002005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1831)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1831)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1831
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128540"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            139..1272
                     /gene="aroB"
                     /locus_tag="VIJ87_19075"
     CDS             139..1272
                     /gene="aroB"
                     /locus_tag="VIJ87_19075"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003856 - 3-dehydroquinate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HEY5446519.1"
                     /translation="MHRFQIPLNGSKRTSYITIGPGLRKDLDQLIDVSKDLEPRRVLV
                     ISNKRVFRLYGADIVASLKRSKLKIFEWLMPEGERFKSFSVLEKAVSFLGTNSFERND
                     LIVALGGGVVGDLAGFAAAIYLRGIPFVQVPTTLLAQIDSSVGGKTGINLPVGKNMVG
                     AFYQPPVVAIDTETLLSLPKRELVAGFCEMVKQSLVADESMFMSTMETLERFQTDTKS
                     IQSFEFESLIAKNCRFKASIVANDERESTKRSDTKSRRILNFGHTTAHALEAITNYRV
                     FRHGEAVGYGMLVAGEISKNLGLLGTNELESLHEAVRLCGPLPRANHLDVNEIIRSLQ
                     HDKKSVAGKINWVLLEGIGRPRIVEGSQVSARVLRLSLRTGLQ"
     gene            1298..1678
                     /locus_tag="VIJ87_19080"
     CDS             1298..1678
                     /locus_tag="VIJ87_19080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446520.1"
                     /translation="MNKDRSNERGSTRLKFIITLAILACVGYAGYLYIPVAYQAYLFK
                     DLMQHYADVCGAQGYQPAWAGEQLMKSEAEYEVPSNAIITPATRDSRIEVRVQFTRPI
                     EFPGYTYMYEFDHTVKSTAFLSFK"
BASE COUNT          466 a          419 c          478 g          468 t
ORIGIN      
        1 tatgtcgcgc ccatccgcta tttaaacgaa ccacattctt agtcaatatc tccacgcgaa
       61 aatggaatcg tgcttacgtg ctagaatcca ctcggctgtt aacgagcttg tggactctcc
      121 agcgatttca cttttccaat gcaccggttc cagatcccac ttaacggaag taaacggaca
      181 agctacatca cgattggacc aggtctccgc aaagacctgg accagctgat tgatgtttcg
      241 aaagacctcg agccccgacg cgttttggtg atatcaaaca aacgcgtctt tcgtctctac
      301 ggcgctgata ttgtcgcgag tttaaaacgc tcaaagctaa agatctttga atggctcatg
      361 cccgaaggag aacgattcaa gtcgttttca gttctggaaa aggccgtctc atttctgggg
      421 actaacagtt ttgagcgtaa cgatctgatt gttgcgttag gcgggggagt ggttggagat
      481 ctggccgggt ttgccgcagc catctatctt cggggcatac ctttcgttca ggtgcccacg
      541 acactgcttg cacagatcga ttcttcagtt ggtggaaaga cagggatcaa cttacccgtc
      601 ggcaagaata tggtgggtgc gttctatcag cccccagtgg ttgccatcga tactgaaact
      661 ctcctgagtt taccgaagcg agaactggtt gcgggctttt gcgagatggt aaagcaatcg
      721 ctagttgctg acgaatcgat gttcatgtcg acgatggaaa ccttagaacg ttttcaaact
      781 gacaccaagt cgattcaatc gtttgagttt gagtcgttga ttgctaagaa ctgtaggttc
      841 aaggcatcta ttgtggccaa tgatgaacgt gaatctacga agcgatcgga tacgaagtcg
      901 aggcgcattt tgaattttgg tcatacaacg gcccacgcac tcgaagcaat tacaaactat
      961 cgagtgtttc gtcatgggga agcggttggc tatggaatgt tagtggcagg cgagatttca
     1021 aagaatctag gtttgctggg aactaacgag ttagaatctt tgcacgaagc ggttcgactc
     1081 tgcggaccgc taccgcgggc gaatcatttg gacgtcaacg agattatccg ctccttgcaa
     1141 cacgacaaga aaagtgttgc tgggaagata aattgggtat tgctcgaagg aatcgggcgt
     1201 cccaggatcg ttgagggaag tcaggtaagt gcgcgtgtcc tacgtctctc gctgcgcact
     1261 ggtcttcagt aatcgagaca gaaagacaag ttcgacgatg aacaaagatc gctccaatga
     1321 acgtggtagt acgagactaa agttcatcat tacgctggct attttggcgt gtgtgggcta
     1381 tgccggttac ctgtacatcc cagttgcgta ccaggcgtat ttgttcaagg atctgatgca
     1441 gcattacgct gacgtgtgcg gtgcccaggg gtatcaacca gcatgggccg gggaacaatt
     1501 aatgaagagc gaagctgagt atgaagtgcc atcaaacgcc atcatcactc cggctacacg
     1561 tgacagtcga attgaagtac gcgtccagtt tacgcgacca atcgagtttc ccggctatac
     1621 ctacatgtac gagtttgacc atacagtgaa gagtaccgcc ttcttgtcgt ttaagtagga
     1681 ttaatgtccg atatggtagc ttgttctgaa tagaaaatct gcggcacaaa cttcttcaca
     1741 agacgattgc taaagcgcgc acattcgact atctagctgc accgtcaagg aaagccttca
     1801 gttttcgtga gcgcgacggg tgacgcagct t
//
LOCUS       DATCGC010002006         1482 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_159803, whole genome shotgun sequence.
ACCESSION   DATCGC010002006 DATCGC010000000
VERSION     DATCGC010002006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1482)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1482)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1482
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_159803"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1472)
                     /locus_tag="VIJ87_19085"
     CDS             complement(<1..1472)
                     /locus_tag="VIJ87_19085"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5446521.1"
                     /translation="MSPKDVLYLDAITATVRRDFSSAVKAYSEIAQQSPNEAQVYVDL
                     GYAYENDGNPDKALENYEKAISLNNGQYATAYLRGGIVYNRTQKTDKAIELFNTAERL
                     FTAASNSEGFNEVLHQRGILYRDRGKYDEARTQFSQSLTSARALGNAAQQITALIELS
                     YLASMKGDSGESEEYAKQAISLAQLNHIENLTAGGLLELGNSFSSRGEYKKAEDYFNQ
                     AIQFAQANKGRLRENRGLSNLGGLYIQTLRVDEGLPLVQRALEFFQANNYPRNVSYCL
                     TQIGRAYRRKGSYALALQALNQKLELAKQGGNQIMIADCYGEIGAVLFDQQNYPAALE
                     QYDNSLKIYEGVGNKLRTVFNKANRGNILWRLGRYDEARAVLSEVLATANDSKDDFKQ
                     LLPVLQVVDSEILLSQRRLSEAQAKGNAAIAAAGHDYPDVAIEGKFVVGLARALSGDG
                     KNGQALCEEAVKLANGLSDANLPTQALLAQAEAALKANSA"
BASE COUNT          337 a          414 c          360 g          371 t
ORIGIN      
        1 taggcggaat tcgctttcag cgccgcttca gcttgggcca acagagcctg agttggcaag
       61 ttggcgtcgc tcaaaccatt cgccagctta acagcctctt cgcagagagc ttggccattc
      121 ttaccgtcgc ccgataatgc cctggctaac ccaacaacaa attttccctc gatggccacg
      181 tctggatagt cgtgtccagc cgccgcgatc gcagcgttac ccttagcctg cgcctcactg
      241 agtcgacgct ggctcaacag gatttcgcta tcgactactt gaagcaccgg cagcaactgc
      301 ttgaaatcgt ctttcgaatc attggccgta gctaacactt cggacaacac cgcacgagcc
      361 tcgtcgtaac gaccaagccg ccacagaatg tttccccgat ttgctttgtt gaaaaccgtc
      421 cgcagcttgt ttcccacacc ctcgtaaatc ttcagagagt tgtcgtactg ttcgagcgca
      481 gccggatagt tttgctggtc aaagaggacc gcgccaatct caccataaca atcggcaatc
      541 ataatttgat tgcccccctg cttcgcaagt tccagttttt gattcagtgc ttgtaatgca
      601 agtgcgtaac tacccttgcg acggtaggcg cgtcctattt gagtcaaaca atacgagacg
      661 ttgcgcgggt aattattagc ctggaaaaac tccagtgctc gctgaaccaa ggggagtcct
      721 tcgtcgactc gcaacgtttg gatatacagg ccaccaagat ttgaaagccc gcggttttca
      781 cgaagacggc ccttattcgc ttgagcaaac tggatcgctt gattgaagta gtcttcagct
      841 ttcttgtact cgcccctgct ggagaaggaa tttccgagtt ctaacagccc gccagcggtc
      901 aggttctcaa tatggttcag ctgagctagt gagatcgctt gtttagcata ttcttcagat
      961 tcgccggagt cgcccttcat tgaagcgaga taactaagct cgatcaaagc tgtaatctgt
     1021 tgcgccgcgt tacccagggc gcgcgccgaa gtgagcgact ggctaaactg agtacgcgct
     1081 tcgtcgtact taccccggtc ccgatagaga atgccgcgtt ggtgcagcac ttcattgaag
     1141 ccctcgctgt tactagcggc agtaaacaaa cgttccgccg tattgaagag ctcaatagcc
     1201 ttgtcagttt tctgcgtgcg attgtaaaca attccaccgc gcagataggc agtcgcgtac
     1261 tgaccgttgt tcaaactaat cgccttctcg tagttctcta aagccttgtc aggattacca
     1321 tcgttttcat aagcgtaacc gagatcgaca tagacttgtg cttcgttagg cgactgttgc
     1381 gcgatttccg agtacgcctt aaccgccgag gagaagtcac gccggacagt cgcggtaatc
     1441 gcgtcgaggt acaacacatc cttcggagac atttcagcgc gg
//
LOCUS       DATCGC010002007         3023 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_31267, whole genome shotgun sequence.
ACCESSION   DATCGC010002007 DATCGC010000000
VERSION     DATCGC010002007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3023
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31267"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..304
                     /locus_tag="VIJ87_19090"
     CDS             <1..304
                     /locus_tag="VIJ87_19090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446522.1"
                     /translation="VVKDIKHLHVSRENYSMAREQLGRIAATCATTLYKAGKLSDLDQ
                     LYGQVIRDLSTVYSVGYRPSNRILDGKWRSVEVQLPQRPDLMARTKRGYFATLSVQ"
     gene            426..1538
                     /locus_tag="VIJ87_19095"
     CDS             426..1538
                     /locus_tag="VIJ87_19095"
                     /inference="COORDINATES: protein motif:HMM:NF016648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FecR family protein"
                     /protein_id="HEY5446523.1"
                     /translation="MRRITNLPMLSLFSGMVLLCSAMSIQAQNRDKFVISAKAGGINA
                     VTGQAAMHTKGETDWQQLTVTDDLETGDRVRTATDGRVEILLNPGSYLRLGGDSEVEL
                     ANNSLANLELRLIRGTAIVEAAGVEETQMLINISTPHARLAIDRQGLYRLNVVPDDAT
                     ELIVRKGRVILGDSHTKIKGGNKVVFSATTVSVAKLTSEEKKLEKDVAIERWSKARAE
                     TLAKANSRLNPRSLTSAFSSVDSDFFLSGFGRNGYWLYNSRAGCYTFLPFSYGVSSPY
                     GQSYPTTVYGGYAGGGGYYPGYRPTSGYSGGNGNGNGGYQGGSSGSSSSGSSSAPTRT
                     MPASSAPSMPSMSPSTNSAPRDPDSGQRIVARPSQP"
     gene            complement(1543..1929)
                     /locus_tag="VIJ87_19100"
     CDS             complement(1543..1929)
                     /locus_tag="VIJ87_19100"
                     /inference="COORDINATES: protein motif:HMM:NF012610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEY5446524.1"
                     /translation="MYVTVDERDARPLYQQLVDEIKTLIARGELAEGTLLPPVRQVAS
                     DLGVNLNTVAFAYRRLQKEGLIRVRHGSGAVVISQTVKEKPDDRLRAQLRTALTQLIL
                     AGLKQPEIKVMINEELDELLRDSKRG"
     gene            complement(1976..>3023)
                     /locus_tag="VIJ87_19105"
     CDS             complement(1976..>3023)
                     /locus_tag="VIJ87_19105"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY5446525.1"
                     /translation="APEQRHGFLGRALRGFQSVSRVDGVKEATRRTALSYASNTSPRF
                     QRFVDAQLNAFLQTSISRCAFLPACLALMVPRTNLYSIYGGAATIAEKLVESIKESGG
                     TIRLNSPVLRLAYNESGNAVGVDLLTGETVVAKRAIISNLTIWDTYGRLVGLHRTPAE
                     IKSQLQENQSRGVYLICATVDETARQRLPAQNFLVAKSQTGSEIESISDEFTFTMGQP
                     AVDGKTPTTIKTSSEVLPWFAFQTSEEDYEERDQEALERFWTEIHRLLPELGSGIEVI
                     ETANPRTYYDQTRRKLGMVMGLEEIPARLNDGGQTRTSIPNLFMVGDTVSSQGFGTPS
                     IVSSSLALANQLSK"
BASE COUNT          702 a          790 c          786 g          745 t
ORIGIN      
        1 ggtcgtaaag gacatcaaac acctgcacgt ctcacgcgaa aattattcta tggctcgaga
       61 acagttgggc cgcattgccg ctacttgtgc taccacgctt tacaaagcag ggaagcttag
      121 cgatctcgat caactttacg gtcaggttat tcgtgatcta agcaccgttt atagtgtcgg
      181 ctaccgacca tcaaacagaa tcctggatgg gaaatggcgt tcggtagaag tgcaactacc
      241 acaacgacct gatttaatgg cacgcaccaa acgcgggtac ttcgccaccc tgagcgttca
      301 gtaggaactt gttttgtcca cacacaaata gtatggatga aaagcttgta aatgctggcg
      361 tccggtctat aatgcttgcg agtctaccgg ccacatcccc aaaatcgaaa cggagggcct
      421 tttccgtgag aagaatcact aacctgccaa tgctgtcgct tttttccggt atggtgcttt
      481 tgtgctctgc gatgagcatc caggcccaaa accgtgacaa gtttgttatt tcagccaagg
      541 cgggtggaat caatgctgtg accggtcagg cggcaatgca caccaagggt gagactgact
      601 ggcagcaact taccgtcact gatgaccttg agaccggaga tcgagtacgc accgcaacag
      661 acggacgggt tgagatactt ctgaaccccg ggtcctatct gcgtttgggc ggtgattctg
      721 aggttgaact tgcgaacaac tcgcttgcga acctggaatt acggttgata cgcggcaccg
      781 ctatcgttga ggcggccggc gttgaagaga cccagatgtt gatcaatatc agcacgccgc
      841 atgctcggtt ggcgatcgat cgccagggcc tttatcgtct taatgtggtt cctgatgacg
      901 ccacggaact gatagtccga aaaggtcgcg ttatccttgg ggactcccac accaaaataa
      961 aaggcggaaa caaagtcgtc tttagtgcga ccacagtgtc cgtagccaag ctcaccagcg
     1021 aggaaaagaa actcgaaaaa gatgtggcga tcgagcggtg gagcaaggct agagctgaaa
     1081 ccctggcaaa agcaaatagt cgccttaatc cgcgaagttt gacttcagcg ttctcctcag
     1141 tggattcgga ctttttcctc agtggctttg gtagaaatgg ctattggctc tacaactcgc
     1201 gagctggttg ctacaccttc ctaccgttta gttatggcgt ctcttcgccg tacggccaat
     1261 cgtatccaac aaccgtttac ggtggttacg cgggtggcgg tgggtattat cccggttacc
     1321 gtccaacctc tggctactca ggcggaaatg gaaatggaaa tggcggctat caggggggct
     1381 ccagcggttc ttcaagttca ggctcttcga gtgcgccaac caggacgatg cccgctagtt
     1441 ccgctccctc gatgcccagc atgtctccgt cgacaaattc ggcgccaagg gatccggata
     1501 gtggacagcg tatcgtggca cgcccatccc agccgtagtt cactagcctc tttttgaatc
     1561 tctcaagagc tcgtccagct cttcgttgat cattacctta atctcgggct gcttcagacc
     1621 ggcaagaatc agctgcgtca aagctgttcg cagttgagcc cgaagccggt catccggctt
     1681 ttccttgacc gtttgtgaaa tgacgacggc tccggatcca tgcctcactc ggatcaagcc
     1741 ttccttttga agccgtcgat aagcaaaagc gactgtattg aggttgaccc caagatcaga
     1801 cgccacctgt cgaaccggag gcagcaaggt tccttctgcc aattcaccac gagcaatcag
     1861 cgtctttatt tcgtcaacga gctgctgata tagcggtcgt gcgtcccgtt catcgactgt
     1921 gacgtacata ttgtctagtg cacgtataca atagacaata catgagtgtc tagaactatt
     1981 ttgaaagttg attagcgaga gccagggaag atgagacgat cgagggtgtg ccaaaacctt
     2041 gagatgaaac agtatcgccg accatgaaga ggtttgggat cgaagttcta gtttggccgc
     2101 cgtcgttcag tcgagctgga atctcctcaa gtcccatgac catccccagc ttgcgtcgcg
     2161 tctggtcgta ataggttctc ggattcgctg tttcaattac ttcgattcca gatcctagtt
     2221 cggggagcag acgatgaatt tcagtccaga accgttcaag ggcctcctgg tcacgctcct
     2281 cgtagtcttc ctcactagtc tgaaacgcaa accacggtag gacttcactc gaagtcttta
     2341 tggtcgttgg cgtcttgcca tcaaccgcgg gctggcccat cgtgaaggta aactcgtctg
     2401 aaatgctttc aatctcagat ccagtctggc ttttggcaac aagaaagttt tgggccggta
     2461 gtcgttgcct cgcggtttca tcaacggtag cgcagatcag atagacaccc ctgctctggt
     2521 tttcctgtaa ctggcttttg atctcagctg gtgttcggtg caggccgacc aatcttccgt
     2581 aggtatccca gatagttagg ttgctgataa ttgcccgttt cgcgacgacc gtttcgccag
     2641 taagcaggtc tacgccaacg gcattaccgc tttcgttgta cgcaagacga agaacagggc
     2701 tgtttaagcg aattgttccg ccagactctt ttatcgactc aaccagtttt tcggcgattg
     2761 tcgcggcgcc tccgtagatc gagtagaggt tcgtacgagg taccattagc gcgagacagg
     2821 caggcaggaa agcacatcta ctaatgctcg tttgtaggaa cgcgttgagc tgagcatcga
     2881 caaagcgctg aaacctggga gacgtattgc ttgcatagct cagcgctgtt cgtctcgtcg
     2941 cttccttaac gccatcgacg cggcttacgg attgaaaacc tcttagcgcc cgccctaaga
     3001 atccgtgcct ttgttcagga gcg
//
LOCUS       DATCGC010002008         1592 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_393228, whole genome shotgun sequence.
ACCESSION   DATCGC010002008 DATCGC010000000
VERSION     DATCGC010002008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1592)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1592)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1592
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_393228"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..459)
                     /gene="ruvC"
                     /locus_tag="VIJ87_19110"
     CDS             complement(<1..459)
                     /gene="ruvC"
                     /locus_tag="VIJ87_19110"
                     /inference="COORDINATES: protein motif:HMM:NF000711.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008821 - crossover junction DNA
                     endonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HEY5446526.1"
                     /translation="MRVLGIDPGSQTTGWGVVEGDGRKYSLVEFGSIRASSTLKFPTR
                     LLKMCTGIEDVIAKLQPDACALEDAFLATNVKVSMKLGQVRGVVLLVAERAALDIHEY
                     SPRLIKQTVVGYGNAEKHQVQEMVRLLLALKSVPAPHDAADALAAAICHFH"
     gene            721..>1592
                     /locus_tag="VIJ87_19115"
     CDS             721..>1592
                     /locus_tag="VIJ87_19115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446527.1"
                     /translation="MSSSLKSILSGFRTNQDDVEQRPLRSEIFSVERLEQYAQTLGTE
                     HKTIVRKGQALLLPRLESNARKLESAYRMLVEAISNGRSISPAAEWLVDNYHIVEEQL
                     REIRQDLPKGYYSELPKLAEGALEDYPRIYALALALIAHTDSRLDTNTLRRFIIAYQT
                     VAPLSIGELWAVAISLRLALVENLRRLSTAISNARAQRDEADKLADKLLELASLQPTT
                     LMTLVQDRLGKHEKLPQTFVVQLVKRLREQHPAVIPVMDWIDQQLAGPGLNIEQVIHA
                     EHQRQASAQVTVGN"
BASE COUNT          412 a          466 c          354 g          360 t
ORIGIN      
        1 atgaaaatgg caaatagctg ctgccaacgc atccgcagca tcatgcggcg ccggcacact
       61 tttcagtgcc aacaacagac gcaccatttc ctgaacctga tgcttctcgg cattgccgta
      121 accaactacg gtctgcttga taagacgcgg tgagtattcg tgaatatcaa gtgccgccct
      181 ttctgccact aacaacacaa ccccgcgaac ctgtccaagc ttcatactta ctttgacgtt
      241 ggtggcgagg aatgcgtctt caagagcgca agcatcaggc tgaagtttcg cgatcacgtc
      301 ttcaatgcca gtgcacatct tcagcaatcg cgtgggaaac ttcagagttg aagatgctcg
      361 aatcgatcca aattcgacca gcgaatactt tcggccatcg ccttcaacga caccccaccc
      421 ggttgtttga ctgcctggat caattccgag tacgcgcatt ggcggagtat atcaggagtt
      481 ggcctttggt ttttgatctt tgggccctaa gactagatcc tcggatcact gtcacaaaac
      541 caaacaacaa acctggatca aaattcgaag gcctaaggcc aaagagctaa gtcccaacct
      601 caattaaaag caccaacgct ttgtgctatc ctgattctcc cccgtttcag ccctttataa
      661 tttttctgaa ccgtttctta aaacgcaacc tgaaacggac gcagcattcg tgtttctctg
      721 atgtcgagct ctcttaaatc aattctttca ggctttcgca cgaaccaaga cgacgttgag
      781 caacgtccgc ttcgttcgga aatctttagt gtcgaacgac tcgaacaata cgctcaaacg
      841 ctcgggacgg aacacaagac gatcgtccgc aaagggcagg cactgcttct accccgcctc
      901 gaaagcaatg ctcgaaaact tgaatccgcg tacaggatgc tcgtcgaagc aatcagcaac
      961 ggccgatcga tttcgcccgc tgctgaatgg ctggtcgata actatcacat cgttgaagag
     1021 caactacgtg agattcgcca ggatcttcct aagggttatt acagcgagct gcccaaactc
     1081 gctgagggag cactcgagga ttatccgcgt atctatgcgc tcgcgctcgc tctaatcgct
     1141 cacaccgact cgcgacttga tacaaacacg ctccgccggt tcatcatcgc ttatcaaacc
     1201 gtcgcgcccc tttcgattgg cgaactctgg gcagtcgcca tctcacttcg actcgcgtta
     1261 gttgaaaacc tccgacgtct gtcaaccgca attagtaatg cccgggcaca gcgggacgaa
     1321 gcagacaagc ttgccgacaa actcctcgaa ctcgcgtctc ttcaaccgac gacgctaatg
     1381 acgctcgttc aagatcgtct cgggaaacac gaaaagctcc cgcaaacatt tgtcgttcaa
     1441 ctcgtcaagc gactgcgaga acaacacccc gcagtaatac cggtgatgga ttggattgat
     1501 caacaacttg ccggtccggg ccttaacatc gaacaagtca ttcacgctga gcatcaacgg
     1561 caagcgtcgg cgcaagtcac cgtcggcaac at
//
LOCUS       DATCGC010002009         1967 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_128625, whole genome shotgun sequence.
ACCESSION   DATCGC010002009 DATCGC010000000
VERSION     DATCGC010002009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1967)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1967)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1967
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128625"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1932)
                     /locus_tag="VIJ87_19120"
     CDS             complement(<1..1932)
                     /locus_tag="VIJ87_19120"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY5446528.1"
                     /translation="MQAQSVASLIFTSGTTGQPKGVMLSHRNLTSMVSMLSSVFDMTT
                     RDGVLSVLPLHHTFEFSTGFLTPLSRGAQITYLPDLTSDALAKAIKNGHVTGMVGVPA
                     LWELLHRRIKNRLYERSDWIGKTADNLIHANAWLRDTTSVNVGQVLFYPIHEGLGGRI
                     RYFISGGSALSEKIQRDFHGLGFTILEGYGLTEASPVLTVTRPENGMLTGTVGKPLPG
                     VEVRIADPDPSGVGEVLARGPNVMLGYYEDETATRKTLVERWLHTGDLGRVDDEGNLY
                     LVGRSKEIIVDTNGKNVYPDELEELYQDSPYVKELSIVGLPDGIGEKVACIVVADDEF
                     DIALSRAELHRLVEEHFREVSASLPYYKRVKVMHFTDIELPRTATRKVKRREVVQILE
                     SLEQTQKSGRRVTTKDVADADSVWLLGIVASVCNRPRSEVSIDTRLNDLGFDSLMFVE
                     LATSIENAGGSISAPERFNEVQDVRELIGVVSRRGGTTTKQEVRTDDREKTDEIHIPS
                     FVRTAGNRAGDLLQRMFYDQFLRTHYEGRSNIPPHTNFIVAANHCSHLDMGLTKMALG
                     ESGKDLVALAAADYFFDTKYKRAVMENFTNLVPMERTGSLRQSLRHARSFLDRGYNAL
                     IFPEGTRSMTGVMADYKPVI"
BASE COUNT          449 a          551 c          505 g          462 t
ORIGIN      
        1 aattaccggt ttgtagtccg ccatcacacc ggtcattgac cgggtgcctt ccggaaagat
       61 gagagcgttg tagccgcgat cgaggaatga acgtgcatgt cgcaacgact gccggagcga
      121 tccagttcgt tccatgggca ccaggttcgt gaagttttcc atcactgcgc gtttgtactt
      181 ggtgtcgaag aaataatctg ccgcggccag ggccaccagg tccttacctg attcaccgag
      241 cgccatcttc gtcaaaccca tatcgaggtg cgaacagtgg tttgcggcga caataaaatt
      301 cgtatgtggc ggaatgtttg atcgtccctc gtaatgcgtg cgcagaaact ggtcatagaa
      361 catgcgctgc aaaaggtcgc ccgccctgtt gccggcagtt ctaacaaatg aaggaatgtg
      421 tatctcgtca gttttttcgc gatcgtctgt cctgacttcc tgtttggtgg ttgtgccgcc
      481 gcgcctgctg accacgccga tgagctcgcg cacatcctga acctcattga aacgttcagg
      541 agcagaaatt gagccgcccg cgttttcgat ggatgtcgcc agctcaacaa acatcaagct
      601 gtcgaatccc aggtcgttca gtcgtgtatc gattgagact tcggagcggg gccggttgca
      661 aacactcgcc acgattccca gcagccaaac cgagtctgca tcggctacat ctttagtcgt
      721 cacccgccga ccactctttt gagtttgttc gagcgactcg agtatctgaa cgacttctcg
      781 tcgcttcacc ttgcgagttg cggtgcgcgg tagctcgatg tcggtaaagt gcatcacctt
      841 tacgcgtttg taatagggca gggaagccga aacttcccta aaatgttctt cgaccagtcg
      901 atgtaactcc gcccgtgaaa gcgcgatgtc aaactcgtcg tcagccacca caatgcaagc
      961 gactttctcg ccgatcccgt cgggtaggcc cacgatgctt agttctttta catatggcga
     1021 atcctggtaa agctcttcga gttcatccgg atagacgttt ttgccattcg tatccacgat
     1081 gatttccttc gaacgcccaa ccagataaag atttccctca tcgtcgactc gaccaaggtc
     1141 gcccgtatgg agccaacgct caaccagggt tttacgcgtc gcagtttcat cttcgtagta
     1201 acccagcatt acatttggcc cacgcgcaag cacctcacca actccgcttg gatcaggatc
     1261 ggcgatccta acttcgacgc caggtaaagg cttgccgacc gttccagtca gcattccatt
     1321 ctccggacga gtgacagtca acactggcga ggcttcggtc aatccatagc cttcaaggat
     1381 cgtgaagccc aggccgtgaa agtcgcgctg gatcttttcg ctcaaagccg agccgccact
     1441 aatgaagtaa cgaattcggc caccgagacc ttcatggatc ggatagaaca acacctgtcc
     1501 gacgttcacg gacgtcgtgt cacgaagcca ggcattagca tgaatgagat tgtcggcagt
     1561 cttaccaatc caatcactgc gttcgtacag acggttctta atgcgtcgat ggagaagttc
     1621 ccaaagcgct gggacgccca ccatgccagt gacgtgtccg ttcttgattg ccttcgccag
     1681 ggcgtcgctg gtcaggtccg gtaaatacgt aatctgtgca ccgcgactca aaggcgtcaa
     1741 gaagccggtt gagaattcga aggtgtgatg gagcggcaaa acagaaagga cgccgtcacg
     1801 cgtggtcata tcgaacactg acgacagcat agataccatg ctcgtcagat tgcgatgcga
     1861 caacatcacg cctttcggct ggcctgtcgt gcccgaggta aaaatcaatg aagcaacact
     1921 ttgagcttgc actttctgcg ggagcagagc tatgcgctcg tcttcag
//
LOCUS       DATCGC010002010         1082 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_260389, whole genome shotgun sequence.
ACCESSION   DATCGC010002010 DATCGC010000000
VERSION     DATCGC010002010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1082
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_260389"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..588)
                     /locus_tag="VIJ87_19125"
     CDS             complement(<1..588)
                     /locus_tag="VIJ87_19125"
                     /inference="COORDINATES: protein motif:HMM:NF016041.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sterol desaturase family protein"
                     /protein_id="HEY5446529.1"
                     /translation="MPKIPLMDYVGRPLLACLFLALLCLQWRFPLRRQHFSVLHRLIR
                     NFVLSIPGFAVVRLAMLPIPITVAMWAQEEHIGLLHLLPLPFWIAGITTFLLMDYAYW
                     WWHWANHMIPIFWRFHNVHHTDLDLDVSTAARFHFGEMIFSIGFLSLAVTVFGISPGM
                     LVSFFIALEAATLFHHSNWRLPIKVERILNLIIVTP"
     gene            783..>1082
                     /locus_tag="VIJ87_19130"
     CDS             783..>1082
                     /locus_tag="VIJ87_19130"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY5446530.1"
                     /translation="MSVSIIVPVLNEAPLLRSFLAHLRERATGAEIVVADGGSSDGTV
                     ELVRDSCDQLVVSERSRAIQMNTGARAARGDILWFVHVDAEVPWGCLAEIKRIMDD"
BASE COUNT          296 a          268 c          294 g          224 t
ORIGIN      
        1 aggcgtgacg atgatcaagt tcaaaatccg ttcgacctta atcggcagac gccagttcga
       61 atgatgaaaa agtgtcgcgg cttccaaggc gatgaagaaa gagaccagca tgcctggtga
      121 gatgccgaac accgtcactg cgagcgagag aaatccaatg gaaaagatca tctcgccaaa
      181 gtggaatcgc gcagcagtgc ttacatcgag atcaagatcg gtgtgatgca cgttatgaaa
      241 cctccagaag attggaatca tgtggttcgc ccaatgccac caccagtagg cgtaatccat
      301 cagcaggaag gtggtgattc cagcaatcca aaacggcaaa ggaagcaagt gtaacaaacc
      361 aatatgttcc tcctgtgccc acatcgcgac cgtaatcggg attggcaaca tagccaggcg
      421 cacaaccgcg aagccgggaa tcgagagcac gaaattgcgt atgagccgat gcaacacgct
      481 gaaatgctga cgacgcagtg gaaaacgcca ctgcaggcaa agcaatgcga ggaataagca
      541 agctagcaat ggcctcccaa cataatccat caaaggaatc ttcggcatta gcgctgtacg
      601 gatacgactc cccctgatct tatcatctcc tcacgtgcac aggcaacgca ccgcgtctgt
      661 ctggacaaag cttgattacg taagcgatca aaaattgtcg gcaagaaaac taaggcacta
      721 cgcgtcgctc accggtttcg tttctggatt agatagctct agattcagtg gaaagtaatc
      781 gaatgtcggt ctcgatcatt gttcctgtcc tgaacgaagc gccgctgcta cggtcatttc
      841 tcgcgcatct acgggaacgg gccacgggcg cagagattgt cgttgcagat ggtggaagct
      901 ctgatggcac ggttgaactt gtgcgcgatt cttgcgacca gcttgtcgtg agtgaacgca
      961 gtcgggcgat acaaatgaat accggtgcac gcgctgcacg cggtgacatc ctctggtttg
     1021 tccatgtcga tgcggaagtt ccgtggggtt gtttggcgga gatcaagcgc atcatggatg
     1081 at
//
LOCUS       DATCGC010002011         1567 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_260426, whole genome shotgun sequence.
ACCESSION   DATCGC010002011 DATCGC010000000
VERSION     DATCGC010002011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1567
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_260426"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..551)
                     /locus_tag="VIJ87_19135"
     CDS             complement(<1..551)
                     /locus_tag="VIJ87_19135"
                     /inference="COORDINATES: protein motif:HMM:NF016269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-binding SYLF domain-containing protein"
                     /protein_id="HEY5446531.1"
                     /translation="MSLVRIFSVVILLSVLGAAAIFTPAQKKSRTQDAERHAREAAEA
                     FADIMNVKDQAIPKELLYKAEAIAVFPGVVKAAFFVGGRGGQGLISRRVKGGWSAPAF
                     FNLNGGSFGPQIGAQMTDYVFLIMNQDGIDGLLKDKFELGGEAGVAAGPVGREAAAST
                     SPRLDAGILSYSRSKGAYIGAAL"
     gene            complement(611..>1567)
                     /locus_tag="VIJ87_19140"
     CDS             complement(611..>1567)
                     /locus_tag="VIJ87_19140"
                     /inference="COORDINATES: protein motif:HMM:TIGR01525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042625 - ATPase-coupled ion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HEY5446532.1"
                     /translation="DTLIVDKTGTLTEGKPKLARVIPFDSFGDDEILQLSASLERGSE
                     HPLGSAIVAAAQEKNLSLTNPASFESFTGKGVSGEVGGRRVSLGNLGFMIDLGVEASD
                     ASQQAEQLREQGQTVMFVVVDEALVGLLCVEDPLKQSAAEAIEQLRREGIHIVMLTGD
                     SRTTAQALATQLHIDRVVAEVLPAQKADTVKQLQTEGRVVAMAGDGINDAPALAQADV
                     GIAMGTGTDVAMKSADLTLVKGDLRGIVRARVLSRETMKNIKQNLFFAFVYNSVGVPI
                     AAGILYPVFGILLSPMFAAAAMSFSSVSVITNALRLRRAKVV"
BASE COUNT          381 a          459 c          363 g          364 t
ORIGIN      
        1 ttgagtgctg caccaatgta ggcacctttg ctacgtgagt aggaaagaat cccggcgtcc
       61 aaacgcggac tcgtagacgc agcagcttca cgtccaactg gtccagcagc gactcccgct
      121 tcgcctccga gctcaaactt atctttcagc aaaccgtcga taccatcttg attcatgatg
      181 agaaagacgt aatcggtcat ttgcgctcca atctggggac cgaagcttcc gccattaaga
      241 ttgaagaacg cgggcgcgct ccaaccgcct ttcactcgcc ggctgattag gccctgacca
      301 ccgcggccgc caacaaaaaa cgcagccttt acaactccgg gaaacaccgc tattgcttca
      361 gctttataga gcaattcctt aggaatcgct tgatctttca cgttcatgat gtcggcaaaa
      421 gcctcggcgg cttcgcgcgc gtggcgctca gcatcctggg tacgtgactt cttttgtgcc
      481 ggtgtaaata tcgcagcggc cccgagaacg ctgagtagta tgacaacact gaaaatgcga
      541 accagtgaca ttagacgaat tcctcctgat tgatacgatg cgtcttctac ggcagcagtt
      601 tgtctacaga ttacacaacc ttcgcacgtc gaagtcgtaa cgcattagtg atcaccgaga
      661 ccgagctaaa gctcatcgcc gccgcggcga acatcggact caacaaaatt ccaaacacgg
      721 gataaagaat acctgcagcg ataggaacac caacggaatt atagacaaac gcaaagaata
      781 gattctgctt gatgttcttc attgtctccc gactcaacac gcgcgcgcgc actatccccc
      841 gcaagtctcc cttcaccagg gtaaggtcag cgctcttcat tgccacatct gttccagtac
      901 ccatggcaat accaacatct gcctgggcca gcgcgggagc atcattaatt ccatctccag
      961 ccattgccac gacgcgaccc tcagtttgca gctgcttcac tgtatcagct ttttgagctg
     1021 gtaagacttc ggcaaccact cgatcaatat gtagttgggt cgcaagtgcc tgtgcagttg
     1081 ttcgactgtc gccggtcaac atcacgatat gtataccctc gcgacgcaat tgctcgattg
     1141 cttccgctgc tgattgcttc agaggatctt caacgcaaag aagacccacg agcgcctcat
     1201 caaccacaac gaacatcacg gtctggcctt gttcgcgcag ttgctcagcc tgttgtgacg
     1261 cgtcgctggc ttcgactccc aggtcgatca tgaaaccaag attgccaagt gagactcgac
     1321 gaccaccgac ttcaccagag actcctttac cggtgaagga ctcaaagcta gcggggttcg
     1381 tcaagcttag atttttttcc tgggccgcag ccacgatcgc agatccgagc ggatgctcac
     1441 taccgcgttc caggctggca gatagttgaa gtatttcatc gtcaccaaag ctatcaaacg
     1501 gtattacccg ggccaacttt ggttttcctt cggttaacgt tccagtctta tcaacgatga
     1561 gcgtgtc
//
LOCUS       DATCGC010002012         1687 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_62718, whole genome shotgun sequence.
ACCESSION   DATCGC010002012 DATCGC010000000
VERSION     DATCGC010002012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1687)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1687)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1687
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62718"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..450)
                     /locus_tag="VIJ87_19145"
     CDS             complement(<1..450)
                     /locus_tag="VIJ87_19145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446533.1"
                     /translation="MFVRVISWIILFAAEEAIHVRHTNQHERGHVALVRGSFSGCVLD
                     FVIYALVMIITLLSLLLPTLLGSTLAVPTPRPVFQDENLTGKYVYKNYRKGKGGFENH
                     LEITNGTNGRLHVSFELIYFYMAGKDETFHEGSGEGDGQLKGIVLTST"
     gene            605..895
                     /locus_tag="VIJ87_19150"
     CDS             605..895
                     /locus_tag="VIJ87_19150"
                     /inference="COORDINATES: protein motif:HMM:NF012442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HEY5446534.1"
                     /translation="MIKLDIINRVADKTGVPKMKAEQAVEALFHSMKEALTRGERIEL
                     RGFGVFVVKPRKRGVGRNPRTGEEVAIPSGKTIRFKPGKELQAHEDDSNDSI"
     gene            complement(901..>1687)
                     /locus_tag="VIJ87_19155"
     CDS             complement(901..>1687)
                     /locus_tag="VIJ87_19155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446535.1"
                     /translation="FPQLISAMFLVVWLSIAVNAETSAAPSASPTPSPSPTVSPARTE
                     SFFQMLMRIAGISATPRNQRNDNTRKVGQVWVAFLSNNTRARVRTADSGYRSPVFFPD
                     GVSILALQGTNVVKLTISDGTKQTLFEVKGIIKLIGFDKNDPDKVLILSDEDQDACPT
                     VGLLSLSSGTVAPQPYGRLEGDQVLLSSLEGWNREYDDGNFAVDSLVQVKRSGTQETK
                     WMDVILMEKNKPDKNVSLCEPRNCSQPSMSNDRKRVVYIKEDE"
BASE COUNT          433 a          426 c          403 g          425 t
ORIGIN      
        1 tgttgaagtt aatacgatcc cctttagttg tccgtctcct tcgcctgagc cttcatgaaa
       61 agtctcgtct ttcccggcca tgtagaaata gatgagctcg aagctaacgt gaaggcgccc
      121 gtttgtcccg ttcgtgattt caagatggtt ctcgaatcca cctttgccct ttcgatagtt
      181 cttgtaaacg tatttgccgg ttaagttctc gtcctggaaa acaggccgag gagtaggaac
      241 agccaaagtt gatccgagca aggtaggtaa gagaagtgat agcaaagtga tgatcatgac
      301 taaagcatat atcacaaagt ctaagacaca gcctgaaaag gaacctctga ctaaggcaac
      361 gtgccctcgt tcgtgttggt tagtgtgacg cacgtggatc gcttcctcgg ccgcaaagag
      421 aatgatccac gaaatcacac gaacgaacac gaacgaaatc tttacttatt cagagcttcc
      481 tgaagtctgt tccatctgct gatcgccaat ccttgacagt cttgattgcg cctctctatc
      541 atcctgacct gctttacagc ccggagagtt cgcccctcgc ggaccagaaa agaggcctct
      601 agtcgtgatc aagttggaca tcatcaatcg cgtggctgat aaaactggcg tacccaagat
      661 gaaagccgaa caggctgttg aggcactgtt tcattcgatg aaggaagcgc taacgcgagg
      721 tgagagaatt gaattacggg gttttggggt ctttgttgtc aaaccaagaa aacgaggcgt
      781 aggccgtaat ccccggactg gcgaagaagt ggcaattcct tcaggcaaaa ccattcgttt
      841 caaacctggg aaagaactcc aggcacacga agacgactcc aatgattcga tttgacgcaa
      901 ctactcatct tctttgatat aaaccactcg cttcctatcg ttagacattg aaggctgact
      961 acagtttcgg ggctcacaca aactcacgtt cttgtccggt ttgttcttct ccatcaggat
     1021 tacatccatc cattttgttt cctgagttcc agagcgcttg acctgcacga gactatcaac
     1081 agcgaagttg ccgtcgtcat attcgcgatt ccatccttca agagacgata aaagaacctg
     1141 atcgccctcc aatcttccgt acggctgggg agcaaccgtg ccactcgaca acgacagcag
     1201 gccgacagta ggacaggcat cctgatcctc atcgctcaaa atcaatactt tgtcggggtc
     1261 attcttatcg aagccaatca gcttgattat ccccttcacc tcaaacagag tttgtttagt
     1321 gccatctgag attgtgagtt ttacaacgtt cgtcccttgc aaggcgagta tcgacacgcc
     1381 atctgggaaa aacactgggg agcgataacc agaatcagct gtgcgcacac gagcgcgcgt
     1441 gttgttgctc agaaatgcta cccacacttg tccgaccttt cgtgtgttgt cgtttctttg
     1501 attgcgtggt gtcgctgaaa taccggcaat acgcatcaac atttgaaaga acgattcagt
     1561 tcttgctggt gacacggtcg gacttggcga cggagtggga ctcgctgagg gcgccgcact
     1621 ggtttcggcg ttaactgcta tcgacaacca gacgactaag aacatcgcac tgatcagctg
     1681 ggggaat
//
LOCUS       DATCGC010002013         1523 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_364227, whole genome shotgun sequence.
ACCESSION   DATCGC010002013 DATCGC010000000
VERSION     DATCGC010002013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1523
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_364227"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1523)
                     /locus_tag="VIJ87_19160"
     CDS             complement(<1..>1523)
                     /locus_tag="VIJ87_19160"
                     /inference="COORDINATES: protein motif:HMM:NF012771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEY5446536.1"
                     /translation="QTIFLQKEEVSGDYSIIYNTLNKDTSNSELEAVQHIYRQLRGAD
                     APDDETARGIIDKLFFSDKRYDLGEVGRYKINRKLNLNFPLEQKTLNKEDIIEIIKYL
                     VRLTNGKAEIDDIDHLSNRRVRTVGEQLYAQFGVGLARMARTIRERMNVRDNEVFTPV
                     DLINARTLSSVINSFFGTSQLSQFLDQTNPLSEITHKRRISALGPGGLSRERAGFEVR
                     DVHYSHYGRLCTIETPEGPNIGLISTLCVHAKINEMGFIETPYHKVNDGKVELKKLTF
                     LSAEEEDVAKIAQASAPLNDKGEFAEDKVSSRQTGDFPILERTEVEFMDVAPNQIVGL
                     SASLIPFLEHDDANRALMGSNMQRQAVPLIRPEQPIVGTGLEAKAARDARVQILSEGD
                     GIVEYVDGKEIHVRYDRTEADRLVSFEDDLQIYNLTKFIKTNQETCINHSPAVKEGQR
                     VKKGDFLTEGYAVQKGEVALGRNLQVAFMPWKGYNFEDAIVINEKVVSQDLFTSVHIS
                     "
BASE COUNT          347 a          370 c          347 g          459 t
ORIGIN      
        1 gaaatatgta cagatgtgaa cagatcctgg ctcaccactt tctcattgat cacgatcgca
       61 tcttcaaagt tgtaaccctt ccatggcatg aatgccacct gcaggtttct tccgagtgct
      121 acttctcctt tctgtactgc atatccttct gtaaggaaat cgcctttctt cacacgctgt
      181 ccttccttca cggcaggact atgattgatg caggtttcct ggttcgtttt gatgaacttg
      241 gtaaggttgt agatctgaag atcatcttca aagctcacaa gcctgtctgc ttctgttctg
      301 tcgtaacgca catggatctc tttaccatcc acgtattcaa caataccatc tccttctgaa
      361 aggatctgta cgcgcgcgtc acgtgcagct ttggcttcga gtcctgtacc cacaatgggt
      421 tgttcaggac ggatcagcgg tactgcctgg cgttgcatgt tcgatcccat cagcgcacgg
      481 ttcgcatcat catgttcaag gaacgggata agcgatgcac tcagacccac gatctggtta
      541 ggagcaacgt ccatgaattc aacttcagtt ctttcaagga tcgggaagtc gccggtctgg
      601 cgtgagctta ccttatcctc agcaaattct cctttatcat taagaggagc acttgcctga
      661 gctatcttcg ctacatcttc ttcttccgca ctgaggaatg tgagtttttt caactctact
      721 tttccatcat ttactttatg gtaaggtgtt tctataaagc ccatctcgtt gatctttgcg
      781 tgaacgcaaa gtgtggagat aagaccaatg ttcggtcctt ccggtgtttc aatggtacag
      841 agacgtccat agtgtgaata gtgaacgtca cgtacttcga agcccgctct ttcacggctc
      901 aaacctccgg gtccgagagc tgaaatacga cgcttgtgcg tgatctcact aagcgggttc
      961 gtctggtcga ggaactgtga aagctgtgat gttccgaaga atgaattgat cacagatgaa
     1021 agcgttctcg cgttgatcag gtcaacggga gtgaatactt cattatcgcg aacgttcatt
     1081 ctttcgcgga tcgttcttgc catacgtgca agaccaactc cgaactgagc atacaactgt
     1141 tcgcccacag tacgtacgcg acggttgctc aggtgatcga tgtcatcaat ttccgcttta
     1201 ccgtttgtaa ggcgcacgag gtatttgatg atctcgatga tatcttcttt gttcagtgtt
     1261 ttttgctcca gcgggaaatt caggttcagt ttgcggttaa ttttataacg gccaacttca
     1321 ccgaggtcat aacgtttgtc gctgaagaat aatttatcga tgataccacg tgctgtttca
     1381 tcatccggag catccgcacc acgcaattgg cggtagatat gctgaacggc ttccagctcg
     1441 gagttggaag tatccttatt aagtgtattg tagatgatgc tgtagtcacc gcttacctct
     1501 tccttctgca ggaagatggt ctg
//
LOCUS       DATCGC010002014         1072 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_96254, whole genome shotgun sequence.
ACCESSION   DATCGC010002014 DATCGC010000000
VERSION     DATCGC010002014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1072)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1072)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1072
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96254"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            149..661
                     /locus_tag="VIJ87_19165"
     CDS             149..661
                     /locus_tag="VIJ87_19165"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY5446537.1"
                     /translation="MSVEPSSQSLSTERLTLRNPNLNDARAIFNLRSNEEVNRYLDRR
                     PAVTIEDATEFLKKIVESGESNYWAICLKESSELVGTICLYDFSPDRQVAEIGYELHP
                     FHQHKGIMQEAVPIVLHHGFHTLKLRTITAFPSVDNKASIKLLVKNGFSLEDDGVERD
                     NVVRYVLHRS"
     gene            complement(827..>1072)
                     /locus_tag="VIJ87_19170"
     CDS             complement(827..>1072)
                     /locus_tag="VIJ87_19170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446538.1"
                     /translation="EEAKDAAAKKIDEAKEAAKEAAPAAAAAVDNMAEKAKDATMNAA
                     DATKEAADKAVDKVQDAASNAMESAKDAVAPSPAPSP"
BASE COUNT          249 a          277 c          279 g          267 t
ORIGIN      
        1 gctcgaagtt tctgcggggc ggtcgatctc ccaaaaagaa cggttaagga tcaacggcgg
       61 gggatagatg attgccagat cactgattga aaatgaaatt gcaatcaggt tgcgtggcga
      121 caaaatagtc acggtttagg agatgtatat gtcagtagaa cctagctctc aatcactatc
      181 gacagagaga ctcacgctaa gaaaccctaa tttgaatgat gcaagagcga ttttcaatct
      241 gcgctcaaat gaggaggtga accggtatct agatcgcaga ccggcagtaa cgattgaaga
      301 tgcaaccgag tttcttaaga agattgtcga gagcggagag agtaattact gggcaatctg
      361 tctaaaggaa agctcagaat tggtgggaac gatatgtctg tacgactttt cacctgatcg
      421 gcaggttgca gagattggtt atgaactcca tcccttccac cagcacaagg gaattatgca
      481 ggaggcagtc cctatcgttc ttcatcatgg attccacacg ctgaagctgc gcactatcac
      541 cgcctttcct tcggtcgaca acaaggcttc gataaagctg ttagtgaaaa acggcttcag
      601 ccttgaagat gatggcgtgg aacgagacaa cgttgttcgt tacgttttgc atcgctctta
      661 actgaagatt ccgaggaaac cgagacccac agtgtttttc ttccgctaca actccagatc
      721 gtgagtctgc tcgtccaatg tccaaacgct tctacggaga agtggcgccg gctgtccagc
      781 gccacatcat cattctactc ctgctaggat tttacgactc ggctcgctag ggcgagggag
      841 cgggcgacgg cgccaccgca tcctttgcgg attccatcgc gttggaggcg gcatcctgga
      901 ccttgtccac tgctttgtcc gccgcctctt tggttgcatc ggccgcattc atggtcgcgt
      961 ccttggcttt ttccgccatg ttatcgaccg cagcggccgc agcgggggcc gcttccttag
     1021 ccgcctcctt cgcctcgtca atcttcttgg ccgcggcgtc cttcgcttct tc
//
LOCUS       DATCGC010002015         2831 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_159978, whole genome shotgun sequence.
ACCESSION   DATCGC010002015 DATCGC010000000
VERSION     DATCGC010002015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2831)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2831)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2831
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_159978"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(184..342)
                     /locus_tag="VIJ87_19175"
     CDS             complement(184..342)
                     /locus_tag="VIJ87_19175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446539.1"
                     /translation="MRTGDEAISINDEGIPHVFDTSTAFIDSPTPQEKNKRYSEVRRD
                     FGSLLIVD"
     gene            394..1674
                     /locus_tag="VIJ87_19180"
     CDS             394..1674
                     /locus_tag="VIJ87_19180"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY5446540.1"
                     /translation="MQETAIASAQTEVEVTPDLILPRFQIEGWATYELEVCARVWPTA
                     RVFALLCNREVEYKGRIPRALFDVDDFLFCPYDEDEFLLRMKRLLKRRKESESGPPTN
                     SIDRDVLIGRSEVFLEAVRQVGLLAQSKAPVVISGETGSGKELLARAIHYRSQRRSRP
                     FIPVNCGALPDDLFENELFGHLKGAYTNATSAEKGLIAEAEGGTLFLDEVDALSAAAQ
                     IKLLRFLQSGEYRPLGSPRSSLADVRIIAATNTDLARRVELRLFREDLLYRLNVLSLT
                     IPALRDRATDIVELATHFVGIYAKEHGRLTPQLGDDALSKLSQHSWPGNVRELEGVIQ
                     RAIVLRDSEVLTATDLDIADSGDLNLAQGDLFRLGKSRAIVQFERNFIARLLAAHGGN
                     ISRAAKAAGKDRRSFQRLISKYSLDRKAFEPQLL"
     gene            complement(1680..2438)
                     /locus_tag="VIJ87_19185"
     CDS             complement(1680..2438)
                     /locus_tag="VIJ87_19185"
                     /inference="COORDINATES: protein motif:HMM:NF014305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446541.1"
                     /translation="MRISRRKFCGITGGTVASLAFSNACRLNSNSAMKNNGRLFVRPH
                     TPTGPRSTGQVMLGLDRERDAILQLPKTAADSPLPLLVMLHGAGQSADDMFWYLGTAH
                     EEAGVAVLAPNSRDHSWDAIRDDFGPDVDFLNRALERALDSALIDPTRMAIGGFSDGA
                     SYAVSLGLINGDLFKKVVAFSPGFIIDGTPNGKPRFFISHGTNDRILSIDRCGRRIAT
                     QLKARGYDVTFREFDGGHEIPEPVAKEGLLAVVT"
     gene            complement(2439..>2831)
                     /locus_tag="VIJ87_19190"
     CDS             complement(2439..>2831)
                     /locus_tag="VIJ87_19190"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEY5446542.1"
                     /translation="RAGMWSQFGINGDPKISQAWRNRTIPDDPRKESNVRGAVAFAFK
                     DPNGRTTQVFINLRDNSATHDKEPFVPIAKVIEGMDIVDALYSGYGETSGGGIRAGKQ
                     DPLFTGGNDFLKRQFPLLDYIIKATIEQ"
BASE COUNT          682 a          724 c          722 g          703 t
ORIGIN      
        1 gcattgttgc tcaactaaat aagcgtctcg ggaagtagtg tcaaatgtgt ttctggctca
       61 ctgaaatgtc acacgaaagt taattgacca cctaacgtta catgcctata ctctcgggcc
      121 atgctcaagc gagtcttatg aataacgcca atcaacctcg ccgatttgcg ccaatccaga
      181 aggtcaatca acgatgagaa gcgacccaaa atcccgacga acttcagaat atctcttatt
      241 cttttcttgc ggagttggac tgtcgataaa tgcagtactg gtgtcaaaaa cgtgcggaat
      301 gccctcatca ttaatggaaa tggcttcatc ccctgttctc atgattgtag ttcccttgta
      361 gcacttctcc agcgtgcgca tccttttgat agggtgcagg aaaccgcaat tgcctcggcc
      421 caaacagaag tagaagtcac gccagatcta attttgccac gctttcaaat cgaaggctgg
      481 gccacttatg agctcgaggt gtgtgcccgg gtgtggccga cggcccgagt ttttgcgctg
      541 ctgtgtaatc gtgaagtgga atacaaaggc cggattccac gtgcgttgtt cgacgtcgat
      601 gattttctct tctgtcccta cgatgaggac gagtttctcc tgcgcatgaa gcgtttacta
      661 aaacgccgaa aagaatccga gtctgggccg cccacaaaca gcatcgatag agatgttttg
      721 attggacgaa gcgaagtatt cctggaggct gtcaggcaag ttggtctact ggcacaatca
      781 aaggcgcctg ttgttatttc cggtgagact ggaagtggca aggaacttct tgctcgggca
      841 attcattatc ggagtcaaag aagatcacga ccgtttatcc cggtcaattg tggcgccctg
      901 ccggatgacc tgtttgagaa cgagcttttc ggccatctca aaggtgccta cacaaacgcg
      961 acttcggcag aaaagggact gattgccgag gctgaaggcg ggacactttt tcttgatgaa
     1021 gtggatgcgt tgtcagccgc agcacagatc aagttgttac gctttctgca aagtggcgaa
     1081 tacagaccgc tgggctcacc tcgttcatca ctcgctgacg taagaattat tgccgcgacc
     1141 aatacggatc tcgctcgcag ggttgaactc agactattcc gtgaggactt gctctatcga
     1201 ctcaatgtgt tgtcgctaac cattcctgct cttcgtgatc gcgcgacgga tattgttgag
     1261 ctggcaacac atttcgtggg catctatgcg aaagagcacg gacggttaac tcctcaactt
     1321 ggcgatgatg cgttaagcaa gctttctcag cattcctggc cgggcaatgt ccgcgaattg
     1381 gaaggcgtca ttcaacgcgc gatcgtctta cgcgattcgg aagttctgac tgctacagac
     1441 ttggatattg ctgattcagg tgatctgaat ttagcccagg gagatttatt cagacttggt
     1501 aagtcgcggg cgattgttca gtttgagcgg aacttcattg cgcgtctcct ggccgcgcat
     1561 ggcgggaata tttctcgtgc ggcaaaggca gcaggcaagg accgcagatc gtttcaacga
     1621 ctcatcagca aatattctct tgatcgaaaa gcatttgagc cacagttgtt atgaacgtct
     1681 tacgtcacca cggctaacaa accttccttc gcaaccggct ccggtatttc atgtcctcca
     1741 tcaaactctc gaaacgtgac gtcgtagccg cgtgctttca gttgcgttgc tattcgacga
     1801 ccgcaacgat caattgacag gatccgatcg ttcgtgccat gtgagatgaa aaatcgtggt
     1861 ttaccgtttg gcgtcccatc aatgatgaaa ccgggagaga aggcaacgac cttcttgaag
     1921 agatcaccat tgattaagcc gagcgataca gcgtacgacg ctccatccga gaaaccaccg
     1981 attgccattc gcgttggatc aatcaacgcg gaatcaagtg cgcgttccaa agcgcggttc
     2041 agaaaatcaa catcaggtcc gaaatcgtcc cgaatcgcgt cccacgagtg atcgcgagag
     2101 tttggtgcaa gcaccgcgac gcctgcttcc tcgtgggccg ttcctaaata ccaaaacatg
     2161 tcatcagcac tttgacctgc gccatgcagc atcacgagga gaggcagcgg tgaatcggcg
     2221 gcggttttag gaagttgcaa tatcgcatcg cgctcgcgat caagaccgag catgacctgt
     2281 cctgttgaac gaggacctgt cggggtgtga ggccgcacga aaagtcttcc attgttcttc
     2341 atggctgaat tgctattaag gcggcacgca ttactgaatg ctaacgacgc aaccgtgcca
     2401 cccgttatgc cgcaaaactt acgcctgcta atacgcattc actgctcaat cgtggccttg
     2461 atgatgtaat caaggagagg gaactgccgt ttcaaaaagt cgttgcctcc agtaaacaac
     2521 ggatcctgct tgcctgctcg aattccaccg ccggacgttt cgccataacc tgagtacagc
     2581 gcgtcgacga tatccatacc ttcgatcact ttggcgattg ggacgaacgg ttccttgtca
     2641 tgcgtcgccg aattgtcgcg caggttgatg aacacttgag tagtgcgtcc gttaggatct
     2701 ttgaatgcga aagcaacagc gccacgtaca ttcgattctt tccttgggtc gtcgggaatt
     2761 gtccggttgc gccacgcctg agaaatcttg gggtcaccgt tgattccaaa ctgcgaccac
     2821 atgccggcac g
//
LOCUS       DATCGC010002016         1747 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_494091, whole genome shotgun sequence.
ACCESSION   DATCGC010002016 DATCGC010000000
VERSION     DATCGC010002016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1747
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_494091"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1092
                     /locus_tag="VIJ87_19195"
     CDS             <1..1092
                     /locus_tag="VIJ87_19195"
                     /inference="COORDINATES: protein motif:HMM:NF024299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5446543.1"
                     /translation="VPSEAFNDDYFVLMLRSLIGLKRQPEISELVRQFQNSNAENAET
                     RAEFASLLVKVGFHDDALKILNIALQTSRSFPVFYALGIANVAVKQFDKAEEYFTAAS
                     TLKPDDVATLRSLAKVARLKGNFEKALSHLLQARRIAPNSPAVLYEFGATTLQMGLVL
                     DALPVFERLHRDYPRELAYLYGLAAAYWTKGEVAETTRLMNTYVALEPRSPSGWYLLG
                     AALLRQEHYSEAQKALQQSLSLKLDVDTEYLLGVSFEKAGNRFAATDIFKKIVQSRPD
                     HAAAHAALGTGLRELGNYVEARRELERAVELDATDLRANYQLGLVYAKLGDKNAAQKM
                     FDRAEELRKRQHDEERIILKLIDEPQPEP"
     gene            complement(1123..>1747)
                     /locus_tag="VIJ87_19200"
     CDS             complement(1123..>1747)
                     /locus_tag="VIJ87_19200"
                     /inference="COORDINATES: protein motif:HMM:NF016497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="arabinan endo-1,5-alpha-L-arabinosidase"
                     /protein_id="HEY5446544.1"
                     /translation="TNETLDPSSDKYRWVDQGKVIGSNIDDDWNAIDPNVVFDEHHQP
                     WLAFGSFWGGIKLRKLEQATGKLSSQDQNLYSLASRPRTSSSPGAIEAPNIIRKNGYY
                     YLFVSFDLCCRGANSTYNIRVGRARRLTGPYIDRSGKAMIDGGGTLVVGGAGRWAGPG
                     HCAVLQEREGDHLVYHAYDTEWRGVPTLRISTLHWDSEGWPAVSQDF"
BASE COUNT          438 a          471 c          425 g          413 t
ORIGIN      
        1 gtacctagtg aagctttcaa cgacgattac tttgtcttaa tgctgagatc tttaattgga
       61 ctaaaacggc aaccggaaat ctccgagctg gttcgtcagt ttcaaaactc caatgccgaa
      121 aatgcggaaa cgcgggcaga atttgcgtcc ttgttagtga aagtcggctt ccacgacgac
      181 gcactcaaaa tcttgaacat cgctttacaa acgtctagat cttttccggt attttatgca
      241 ctcggcatcg ccaacgtcgc tgtgaagcaa tttgacaagg cagaggaata tttcactgcg
      301 gcgtcgacgc taaaacctga cgacgtagca accctgcgtt cgctcgcaaa agtagcgcgg
      361 ctcaaaggta atttcgagaa agcgctttct catcttctcc aggctcggcg cattgctccg
      421 aattctccgg ccgttcttta cgaatttggc gcaacaacct tgcagatggg tttggtcctt
      481 gatgctcttc cagtttttga gcggctgcac cgagattatc cacgcgaact tgcttatctc
      541 tatgggctcg ctgccgcgta ttggaccaaa ggtgaagtcg ccgaaacaac tcgcttgatg
      601 aacacatacg ttgcattaga acctcgatcg ccttcaggtt ggtatctgct cggtgcggca
      661 ctgcttcgtc aggaacatta ttcagaggca cagaaggcac tgcaacagag tcttagcctt
      721 aaacttgatg ttgatacgga atatctcctg ggagtgagtt tcgaaaaggc tggaaaccgt
      781 ttcgctgcaa ccgacatttt taaaaagatc gttcaatcgc gcccagacca cgctgccgca
      841 catgccgctc tcggaacggg acttcgcgaa cttggaaact atgttgaagc ccgccgcgaa
      901 cttgaacggg ccgtcgaact cgacgccaca gacctgcgcg cgaattacca gctgggcctg
      961 gtctacgcga aattgggaga caaaaacgcg gcgcaaaaga tgtttgaccg tgccgaggaa
     1021 ttacgcaaac gtcagcatga cgaggaaaga ataattctca agctgatcga cgagccacag
     1081 ccggaacctt aaaagcggca tcggcaggct atgacctttg gctcaaaagt cctgagagac
     1141 tgctggccaa ccttccgagt cccaatgaag agttgaaatc cgcagcgtgg ggacaccacg
     1201 ccactctgtg tcgtaggcgt gatagacgag atggtcacct tccctttcct gtaaaaccgc
     1261 acagtgacct ggtccagccc accggcctgc acctcccacg accaatgttc cgccaccatc
     1321 aatcatggct tttccgctgc ggtctatgta tgggccggtg agccgccgcg cacggccgac
     1381 acgaatgttg taggtgctgt tcgctccacg acaacagagg tcgaaagaaa cgaagagata
     1441 gtagtaacca tttttccgaa taatgttcgg agcttcaatt gcaccgggtg aacttgacgt
     1501 tcgcggccga cttgctagtg agtacaaatt ttgatcttga gaagaaagct tgcctgttgc
     1561 ctgttccaac ttacgcagtt tgatgccacc ccaaaaacta ccaaacgcca accaaggttg
     1621 atggtgttcg tcaaacacca cgtttggatc gatcgcgttc caatcatcat cgatattgga
     1681 tccgatcacc ttgccctgat caacccatct gtacttgtca ctcgagggat ccagcgtctc
     1741 attcgtc
//
LOCUS       DATCGC010002017         1310 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_196589, whole genome shotgun sequence.
ACCESSION   DATCGC010002017 DATCGC010000000
VERSION     DATCGC010002017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1310)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1310)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1310
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_196589"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1310)
                     /locus_tag="VIJ87_19205"
     CDS             complement(<1..>1310)
                     /locus_tag="VIJ87_19205"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY5446545.1"
                     /translation="AVWWSDLLVALGKEDIPRAIQVGLDWRVLAFTAGVSLLTGLVFG
                     MVPAFQASRTELTESLKEGGRSGSGGARRNWMRSALVVSELAVAVILLVGAGLLIQSL
                     WRLQKVDSGLQPDHVLTFTVSISDVKYPSEQQSQFFQQLRTKLESLPGVEGASGVLPL
                     PLSGDRFSISFEIDGRPVAKKDQPSADFFVADAGYFKAMGIPIVKGRDFNQFDQHKSA
                     QVVIVTEAFARQFFPGEEALGKRIKPGMSTFDGEKSQMREIIGVVGDIRNRSLSVESK
                     PAYYVPETQVPFNQLSMVVRTTGDPHVLINAVGKEVLALDKDVPVYSVKTMNEYLASS
                     VAAPRFNTTLLSIFAGVALVLTIVGLYGVMSYSVAQRTNEIGIRLALGAQRRDVIALV
                     VKQGLLLVLFGLLIGLPSAFALMRLISGLLFGVTNKDPMTFVSA"
BASE COUNT          350 a          374 c          301 g          285 t
ORIGIN      
        1 cgcacttaca aaagtcatgg gatccttgtt cgtaacgcca aacaacagtc ctgagatcag
       61 acgcattagg gcaaatgcgc tcggcagtcc gattagcaat ccgaaaagaa ccagcagaag
      121 tccctgtttc actactaaag cgatcacatc gcgtcgttgc gcacccaggg ccagacgaat
      181 accaatctcg ttcgtgcgtt gggccaccga gtaactcatt acgccgtaaa gccctacgat
      241 agttagaacg agagctacgc ccgcaaagat tgaaagcaaa gttgtattga agcgcggcgc
      301 ggccactgac gaagcaaggt actcattcat cgtcttcacg ctgtacaccg gaacgtcttt
      361 atcgagcgcc aacacctcct tgccgaccgc attgatcagg acatgaggat cacccgtggt
      421 gcgaactacc attgacagtt ggttgaatgg cacctgggtc tcaggcacgt agtacgcagg
      481 tttggactca acgctcaaac tccggtttcg aatgtcgccg accacaccaa taatttcgcg
      541 catctgtgac ttttcaccat cgaatgtcga cataccgggt ttgattcttt tccccaatgc
      601 ctcttcacct ggaaaaaact gtcgcgcaaa tgcttcggta acaattacca cctgggctga
      661 tttgtgctga tcgaattgat tgaaatctcg acccttcaca atcgggattc ccatagcttt
      721 gaaataaccg gcgtcagcta caaagaaatc ggcagagggt tgatctttct tcgccacggg
      781 ccggccatca atctcgaaag aaatactgaa ccgatctccg cttagcggta acggcagaac
      841 tccactcgcg ccctccacac caggcaacga ctcaagcttg gttcgcagtt gttgaaagaa
      901 ttgactctgc tgttcacttg gatacttgac gtcagaaatc gaaactgtga aggtcaaaac
      961 gtgatcaggc tgtagacctg aatcgacttt ctgcaaccgc cataggctct gaataaggag
     1021 acctgcaccc acaaggagaa tcacagcaac ggcaagttcg ctaactacga gcgcactgcg
     1081 catccaattg cgtcgtgcgc caccactgcc gctgcgtcca ccttctttga gtgattcagt
     1141 aagttcagtt ctcgaggctt gaaatgctgg aaccattcca aagaccaacc ccgtaagcaa
     1201 ggaaactccg gccgtgaaag ccaacacgcg ccaatcgagt cctacctgga tcgcgcgcgg
     1261 aatgtcttcc ttgccaagcg ctactaacaa gtcggaccac caaacggcca
//
LOCUS       DATCGC010002018         1174 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_128756, whole genome shotgun sequence.
ACCESSION   DATCGC010002018 DATCGC010000000
VERSION     DATCGC010002018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1174)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1174)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1174
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128756"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..524
                     /locus_tag="VIJ87_19210"
     CDS             <1..524
                     /locus_tag="VIJ87_19210"
                     /inference="COORDINATES: protein motif:HMM:NF019307.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptidase dimerization domain-containing
                     protein"
                     /protein_id="HEY5446546.1"
                     /translation="SYPFPKEPRTTFNVGKVQGGTSVNAIPSEASMDIDLRSSDEEEL
                     RRLDAYFRRSVHEAVDQENGGRRPGDSELSLSIDLVGNRPSGSTDPQSPIVELAMEAT
                     RAIGVEAQLEQSSTDSNLPISIGIPAITVGSGGASGSSHTLDEWYEPLERDKGLKRGL
                     LTILGVVGLERNS"
     gene            complement(627..>1174)
                     /locus_tag="VIJ87_19215"
     CDS             complement(627..>1174)
                     /locus_tag="VIJ87_19215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446547.1"
                     /translation="SASNHESHRSFPPAFLGFGNSESQGRRKPLFIGAIAVAVLGSVA
                     VIGVPAGWYHKKPVAVVESSSQQAPSPQNTQPAQATVQPAPVATESTSPDDAAMAAKR
                     QREKDKKSRDAKAAETTANVAPVPAANPGGKRVVVSVTYDESGRVTQASGGDANALRI
                     ARQKRFPPGKGGSASVTIPIN"
BASE COUNT          251 a          295 c          328 g          300 t
ORIGIN      
        1 cgagttatcc atttccgaaa gagccacgta cgacattcaa tgtgggcaaa gtgcagggcg
       61 gcaccagtgt taacgcaatt ccaagcgagg cttcgatgga catcgatctg agatcgagcg
      121 acgaagagga gttgcgtcga ctcgatgctt atttccgtcg ttctgttcac gaggcagttg
      181 atcaggaaaa tggtggacgc cggccaggag acagcgaatt aagcctgagt atcgacctgg
      241 taggtaatag gccttccggt tcaactgatc ctcagtcgcc aatcgttgag cttgccatgg
      301 aggcgacccg agcgattggt gtcgaagctc aactcgagca atcctccact gattctaatc
      361 tgccaatctc aattggtatt cctgcaatca ctgtgggctc aggaggagca tctggttctt
      421 cacatactct tgacgagtgg tacgagccac tcgaacgtga caagggcttg aagcggggtt
      481 tgctcactat actcggagtg gttggattgg aacggaacag ttagctattc ggtcagcttc
      541 aaagagaagg gtccttgttt cagatagaca aagggcgcct gcatcgacat gcaggcgccc
      601 ttgtagtttt agtgatccgg ttctgactaa ttgatcggaa ttgttactga tgctgatccg
      661 ccttttcctg gtgggaaccg tttttgtctc gcgattcgca atgcattcgc atcaccgcct
      721 gaggcttgag tcacgcggcc cgattcatca taagtcacgc tcacaacaac tcgttttccg
      781 cccggatttg ccgcgggaac tggagctacg ttagcggtgg tttcggcagc tttcgcatct
      841 cgtgactttt tgtctttttc gcgttgtcgt tttgctgcca tcgcagcatc gtcaggcgag
      901 gtggattcgg ttgcaactgg tgctggttgg accgtcgcct gtgctggttg cgtattctgt
      961 ggtgacggcg cctgctgcga cgaactctca acgacggcta caggtttctt gtgataccaa
     1021 ccagccggaa ctcctatcac cgcgacgctg ccaagcaccg caaccgcgat tgctccgatg
     1081 aataatggct tgcgtcgacc ttgagattca gaattgccaa atcccaggaa tgcaggcgga
     1141 aaagatcggt gcgactcgtg attactggcg gagt
//
LOCUS       DATCGC010002019         1456 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_364342, whole genome shotgun sequence.
ACCESSION   DATCGC010002019 DATCGC010000000
VERSION     DATCGC010002019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1456)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1456)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1456
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_364342"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..493)
                     /locus_tag="VIJ87_19220"
     CDS             complement(<1..493)
                     /locus_tag="VIJ87_19220"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY5446548.1"
                     /translation="MLENKKGIIFGVANKRSIAWATAQALHDAGATLAFTYQGERLKE
                     NVESLTAGSMSDSLLLACDVTNQAEVDATFKKVGEEFGKLDFLIHSIAYAPREALDGE
                     YLDTSRDAFLTALEISAYSLPQLARAAAPLMTEGGSVVCMSYYGAEKVVAGYNVMGVA
                     KAAL"
     gene            complement(512..1282)
                     /locus_tag="VIJ87_19225"
     CDS             complement(512..1282)
                     /locus_tag="VIJ87_19225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446549.1"
                     /translation="MIRISLFACLLICQATTAFAQVNYPWLPKGAVVLEARQLTAAQR
                     QNRRLVLWMLNPKKNPNNYKSDDPYTCPDETRGSHYSGPTRVSLIDSSTSTLINTLKV
                     LRDYEEPDDEVDLPYAIRKGYYYQVPGRAPATMEVKPTIMLLKDYNGDGKALEFALFD
                     AEACMGLATTLIGYSEKQDRVIQDPLQLEVIENGKHSTTTNLWPDYLMKKDPVKPGYW
                     KYEIDYRGRGGSLDKWEVRYNAEKEWFEGTLTQLADEP"
BASE COUNT          320 a          378 c          369 g          389 t
ORIGIN      
        1 cgagtgccgc cttcgctaca cccataacgt tgtagcctgc aacaaccttc tcagcgccgt
       61 agtacgacat gcaaaccaca ctgccgcctt cagtcatcaa cggagctgca gcacgggcga
      121 gctgcggtag tgaataagcg ctgatttcga gtgcggttaa aaaagcgtcg cggctggtgt
      181 cgaggtattc gccgtcgaga gcttcgcgtg gagcgtaggc gatgctgtga attaagaaat
      241 caagtttgcc aaattcttcg ccaaccttct tgaacgttgc gtcaacctcc gcctggttag
      301 tcacgtcgca cgccagcaag agcgagtcgg acattgaacc ggcagttaga ctttcgacgt
      361 tctcttttag tcgttcgcct tgataggtga aagcgagggt cgctccagcg tcgtgaagcg
      421 cctgcgcggt ggcccaggcg attgaacgtt tgtttgctac tccgaagatt atgccttttt
      481 tgttttccag cattggctac cttttcctat cctatggttc gtcagcgagc tgagtcagag
      541 ttccttcaaa ccattccttt tcagcgttgt atcttacttc ccacttgtct aacgaaccac
      601 cacgacctcg atagtcgatt tcgtatttcc aataacccgg tttcaccgga tctttcttca
      661 tcaaataatc gggccacaag tttgtggtgg tcgagtgttt tccgttttcg atcacctcaa
      721 gttggagtgg gtcctggatc actcgatcct gcttttcgct gtagccaatg agtgtcgttg
      781 ccagccccat acacgcttca gcgtcgaaga gagcgaactc taaagctttt ccatcgccat
      841 tgtagtcttt caacaacata atggttggct tcacttccat agttgcaggc gctcggcctg
      901 ggacctggta ataataaccc ttgcgtattg cgtaaggcag atcgacttcg tcatctggtt
      961 cctcgtagtc tctcaaaact ttaagggtgt tgattaaggt gcttgtggac gagtcgatca
     1021 gcgaaacgcg agttggtcca gagtagtggc tgccacgggt ttcgtcagga caggtataag
     1081 ggtcgtcgct cttgtaattg tttggattct ttttgggatt gagcatccat aacacaagcc
     1141 tccgattttg ccgttgtgcc gcggtgagtt gacgcgcttc gagcacgacg gcgcccttag
     1201 ggagccacgg atagttcacc tgcgcgaacg cagtcgtcgc ctgacagatc aacagacaag
     1261 caaatagact gattcgaatc acgggatact atgcggcagc agtttccgga gagttaatca
     1321 aagccttgta ctcgccgctc tcgacccact gcagaatttc agagactcgc caaaccggaa
     1381 acggatgact tagtcccgaa gtgatgacat cagcccagaa acgatcaagg gctttttcgt
     1441 cgtagttctt ctggaa
//
LOCUS       DATCGC010002020         1895 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_160049, whole genome shotgun sequence.
ACCESSION   DATCGC010002020 DATCGC010000000
VERSION     DATCGC010002020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1895)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1895)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1895
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_160049"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..276)
                     /locus_tag="VIJ87_19230"
     CDS             complement(<1..276)
                     /locus_tag="VIJ87_19230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446550.1"
                     /translation="MAPDSNDKRWNRIPIRFVDDEKQSEPSANAKPADMDRLDPDSQS
                     NSSEDEIELNDLLEEQDETPAREFGGGPITAELVATRSELKRVQEENT"
     gene            complement(303..1421)
                     /gene="hrcA"
                     /locus_tag="VIJ87_19235"
     CDS             complement(303..1421)
                     /gene="hrcA"
                     /locus_tag="VIJ87_19235"
                     /inference="COORDINATES: protein motif:HMM:TIGR00331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heat-inducible transcriptional repressor HrcA"
                     /protein_id="HEY5446551.1"
                     /translation="MPRRNQNLQTGDQRPIDSRTEVLLAALIKEHLVTGEAVGSRVLS
                     DRFAHGYGWSSATIRNVMGELEDAGFVEQPHTSAGRIPTDKGYRYYVDNMLGEARLSR
                     GDLRAIDDLFAVGDIDASVSPDRLMETASHVLSAFSQNVGIVVSPSLAENRLKHIEFV
                     QLPDKRILVVLVSTSSIIHNKVIRTTDDDLTQDELDRTARYLNAEFSGKSLSAIRTEI
                     VALMKEEKALYDRLLRNAVLLCERSLEGEETSGDVYVDGASNILSKPDFADIERMRDL
                     FRTFEEKSRLIKILNECVSHDSSLTGDVHVVIGREHPASSMRGCALITAPYRVGSNES
                     AGTIGVVGPMRIEYARIMAMVNYMARLIEHRLNGAVAS"
BASE COUNT          479 a          517 c          432 g          467 t
ORIGIN      
        1 ggtgttttct tcctggaccc gtttcagctc agatcgtgta gctacgagct cagctgtaat
       61 gggaccaccg ccgaactcgc gcgccggggt ctcatcctgc tcctcgagca aatcgttaag
      121 ttcaatctcg tcttctgagg agtttgattg gctatcggga tctaatctat ccatgtcggc
      181 aggcttcgcg ttcgcagaag gttcgctttg cttttcatcg tccacaaacc tgattggaat
      241 acggttccat cgtttgtcgt tactgtcagg tgccattgag agggatcgaa acctttaaga
      301 acctacgacg ctacggcacc gttcaaacga tgctctatca accgcgccat gtagtttacc
      361 atagccatta tgcgggcata ttcaattctc atcggcccga caacgccaat cgtgcccgcg
      421 ctttcattgg atccgactcg atatggtgcg gtaatcaaag cacaacctcg catagaactg
      481 gccggatgtt cccgtccaat tacaacgtgc acatcgcccg tgagagaact gtcatgagac
      541 acacactcgt tgagaatctt gatcagacga gacttctctt caaaggtgcg aaacagatcc
      601 cgcattcgct caatgtcggc gaaatccggt ttactcagga tattcgaggc gccgtctaca
      661 taaacatccc cgctcgtttc ctcaccttcg aggcttcgct cgcacagcaa gacagcattg
      721 cgtaacaagc gatcgtaaag cgccttctcc tccttcatca gagccactat ttcggtgcgg
      781 atggctgaga ggctctttcc gctaaactcg gcattcagat aacgagctgt acgatcaagc
      841 tcgtcctggg taaggtcgtc gtcagtagtt ctaattacct tgttgtgaat tatgctggaa
      901 gtcgaaacaa gcactaccaa aattcgcttg tccggtaact gcacaaactc gatgtgtttc
      961 agcctgttct cagccagtga aggcgacaca acgattccta cattctgtga aaaagccgat
     1021 aacacatgcg acgctgtttc catcaatcga tccggcgaaa cagaggcgtc gatgtcgcct
     1081 accgcaaaca aatcgtctat ggctcgaaga tcgccgcgag atagccttgc ctcacctagc
     1141 atgttatcga cgtaatacct gtagcccttg tcagtaggaa tccgaccagc tgaggtgtga
     1201 ggttgttcga cgaagccggc atcctctaat tcccccatca cgtttcgaat ggtagcggaa
     1261 ctccagccgt aaccatgtgc aaaccgatca gacaggaccc tggaaccgac agcctcacca
     1321 gtaaccaagt gctccttgat tagcgccgcc aagagcactt cagtacggga atcgatagga
     1381 cgttgatcgc cagtttgaag attttgattt cgacgaggca tgctatttgg taatcagggg
     1441 ccggtcagtt ccagtcagat caaagactgt tttctaagca aaaagccaat agctactgac
     1501 aatttgcagt ataaggattt aatcaaaccc ctgcaaataa ggggttggat tcaatagtca
     1561 ccgactccgg tctcggagcc tcaggagcgg aagaaagccc cacaaaaaac ttcaattccc
     1621 ctaaaccgtt gataagtctg aggtttgtcc agaatcccgt catggtcgct gcgtgcctaa
     1681 accacaacct gcaattttct tagaaaaatc gcaaagtcgg ccctcgtgcg gatgattgac
     1741 tgcctcaacc gggcctcctt aagattgcac ccgctggatt caaaatctgg tttccctcag
     1801 cactactcgg tctgattcaa caactttact ttcagtcccg gtaaatgcag acctgtctcc
     1861 caaaccagat ttcgcaaagc atggaatgag tgaag
//
LOCUS       DATCGC010002021         1947 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_31546, whole genome shotgun sequence.
ACCESSION   DATCGC010002021 DATCGC010000000
VERSION     DATCGC010002021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1947)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1947)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1947
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31546"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(118..345)
                     /locus_tag="VIJ87_19240"
     CDS             complement(118..345)
                     /locus_tag="VIJ87_19240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446552.1"
                     /translation="MSPLYTKNLPDDRTYSGKILPADLSPQERHLILEGDLGYCEGHR
                     VIYRKMALHSCLVPLVIDGAKASDCKEWGTP"
     gene            complement(385..651)
                     /locus_tag="VIJ87_19245"
     CDS             complement(385..651)
                     /locus_tag="VIJ87_19245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446553.1"
                     /translation="MASLFALYNSTNADQWFILRCSTKESRGKELSPVTQGVILRLPV
                     NGNKVITLEDGEVVTSFSFNSKAEAEASIGQSEKHKFEFMEATS"
     gene            complement(934..1140)
                     /locus_tag="VIJ87_19250"
     CDS             complement(934..1140)
                     /locus_tag="VIJ87_19250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446554.1"
                     /translation="MVLIMGGHHKTPVATGTRWGKLVVGKPVLKNESSQVQWEVKCDC
                     GKKARVWGYNLVKGKKTSCGLCEK"
     gene            complement(1266..1493)
                     /locus_tag="VIJ87_19255"
     CDS             complement(1266..1493)
                     /locus_tag="VIJ87_19255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446555.1"
                     /translation="MAIILYGGTKETVLKQLDCKEHDWHGPAIDRISRYFKCVKCYCI
                     QRDLMTEQDYFKVATDADRAGKKAKKIPPRR"
     gene            complement(1496..1789)
                     /locus_tag="VIJ87_19260"
     CDS             complement(1496..1789)
                     /locus_tag="VIJ87_19260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446556.1"
                     /translation="MFCWLTGHKKKYVGVEDIVWADDSGSLKRPCIHDHAWLKHCRVC
                     GKSVQIARWVCECGMMGETFIAQGAGIYRVEFGKLVPDEKRWANHLAIISREI"
BASE COUNT          407 a          585 c          483 g          472 t
ORIGIN      
        1 cgacggcggc cgcggccacc cgttcggcct tgagagcccg cgccttccag gactcgagcg
       61 tcgacttccc gggcttcttc gcggtcttca ttcccttcgc tcctcgattg agacggctca
      121 cggagtcccc cattccttgc aatcagaggc cttcgcgccg tcgatcacca gaggcacgag
      181 gcaggagtgc aaggccatct tccgatagat cactcgatgg ccttcgcagt atccgaggtc
      241 tccttccagg atcagatgcc gctcctgcgg ggatagatcc gccggcagga tttttcctga
      301 ataggtccga tcatccggca ggttcttcgt gtatagcggg ctcatcgacc gttaagtata
      361 aacgcggttt acggtctgtc aaggctaaga agttgcttcc atgaattcaa acttatgctt
      421 ttcgctctgg ccgatcgatg cctcggcctc tgccttggaa ttgaaggaga aggatgttac
      481 gacctcccca tcttccaggg tgattacttt gttcccgttc acggggagac gcagaattac
      541 tccttgagtt acgggtgata gctctttacc acggctctct ttggtggagc accgcaggat
      601 aaaccactgg tcagcattcg tgctgttata gagggcgaat aaacttgcca cgattcctcc
      661 ttagcaacgc ctcatctcat atcgttcaat taccatcttg caggagttgc aatacaccgg
      721 cgatgcgagg tgcttgtatt cttctgtcga aacgatgccg gcgtgttcgc cgcagatttc
      781 gcagtacagg cccactggac tggggcccct ttcccggcgg gattcttggg gaatgacgtt
      841 cgggcggcgg cgtaagaccg tcgcatagat taggaatgct aggaacccga agaacaaaag
      901 cgcagagatc atatcggaca tattcttctt ctcctacttc tcgcagagtc cgcaactcgt
      961 cttcttccct ttgaccaggt tgtagcccca gactcgggcc ttcttgccgc agtcgcactt
     1021 cacttcccat tggacttggg aagactcatt cttcaggacc ggcttgccga ccacgagctt
     1081 gccccagcga gtgccggttg cgaccggagt cttgtgatga ccgcccatga tcaagaccat
     1141 cccagcttga gatgccggca cacccatacg atcagaaccc caagggcgat gagcgcaaag
     1201 ggagccagtc tacgagccca gacaaccacc atgatcatcc tcatcaaggc cttctcgctc
     1261 atcgcttatc tcctaggcgg aattttcttt gccttcttgc ccgctcggtc ggcatcggtg
     1321 gccactttga aataatcctg ctcggtcatc agatcacgct ggatgcagta gcactttacg
     1381 cacttgaaat acctagagat ccgatcgatt gccggcccat gccagtcgtg ttctttgcaa
     1441 tcgagctgct tgaggacagt ttccttggta ccgccgtaaa ggatgatcgc catggtcaga
     1501 tctctctcga aatgatggcc agatgattcg cccagcgctt ctcgtcggga accagcttcc
     1561 cgaactccac gcgataaatt cccgcacctt gagcgatgaa ggtctcgccc atcattccac
     1621 actcgcagac ccagcgggcg atctggacgc tcttcccgca gacgcggcag tgtttcagcc
     1681 aggcatgatc atgaatgcag ggtcttttga ggctgcctga atcatcggcc cagacaatat
     1741 cctcgacgcc cacgtacttc ttcttgtggc cggtcaacca gcaaaacatg gtcccctcac
     1801 ttcaatactt cagcccaaag tcgaactcgc acccaagcac cgagattgct gatcttcagc
     1861 ttttttgagt ttcctttctt atcggagagc gagacccgaa aatagcctgg cttactatta
     1921 tcgatcttcc cgaaccagat gaagccg
//
LOCUS       DATCGC010002022         1240 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_426137, whole genome shotgun sequence.
ACCESSION   DATCGC010002022 DATCGC010000000
VERSION     DATCGC010002022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1240)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1240)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1240
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_426137"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(100..>1240)
                     /locus_tag="VIJ87_19265"
     CDS             complement(100..>1240)
                     /locus_tag="VIJ87_19265"
                     /inference="COORDINATES: protein motif:HMM:NF013080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sulfatase/phosphatase domain-containing protein"
                     /protein_id="HEY5446557.1"
                     /translation="DNVDRSAASYQLVTFPQLLHQAGYESAFIGKWHMGNDEKPRPGF
                     DRWVSFKGQGTYIDPPINEDGRQVKRTGYTTDILNGYAVEFIKRRHDKPFLVYLAHKA
                     IHPEVTQNDDGSVDLTAAERFIPARRHETAFVGKRIPHRPNYGRAPEGKPALQRQIGT
                     LPPLGAATVTSDQSILERQRTLLAIEDGVGEILKALKATGQLDNTVIVFTSDNGYFYG
                     EHGLSVERRLAYEESIRLPLLMRYPKVIRAGTVRDEFALNIDLAPTLLSLAGVGVPDK
                     VQGRSLLPLLKGERPAWRDSFLIELYSDKVFPRISQMGYKAVRNGRWKYIHYLELDGM
                     DELYDLKSDPYEMKNVIKEPGAKKALQQMKVELERLLRETKADQL"
BASE COUNT          279 a          335 c          314 g          312 t
ORIGIN      
        1 ggagtgcggt ggcctggcac cgctttagta aagaactcct ctaatttggg ggtcgcttat
       61 aacaaagcgg tgccagccca ccgcattcca aggggcgccc taaagctgat ccgccttcgt
      121 ctcgcgaagc aaccgttcca gttccacctt catttgctgg agtgctttct tcgcaccggg
      181 ctccttgatc acattcttca tttcataagg atcgctcttc aggtcgtaga gctcatccat
      241 accatcaagc tccagatagt gaatgtattt ccaacgtcca ttacgtaccg ccttgtagcc
      301 catctgcgag attcgtggaa aaactttgtc tgagtaaagc tcaatcagaa atgaatcgcg
      361 ccacgccgga cgctcgcctt tcaatagcgg caacagtgaa cgtccctgga ctttatccgg
      421 aacaccaaca ccagctagcg acagcagcgt aggtgcgaga tcaatgttca gggcaaactc
      481 gtcgcgtact gtgccggccc tgattacctt cggataacgc atcaatagag gcaggcgaat
      541 cgattcttcg tatgcgagtc ggcgttcgac actcagacca tgttcaccgt agaagtaacc
      601 attgtcactt gtgaacacaa tgactgtgtt gtcgagttgt ccggtcgcct tgagcgcctt
      661 cagtatttcg ccaactccat cttcaatcgc cagcaaagtt cgctgacgct caagaattga
      721 ctggtcagat gtaaccgttg ctgcacccaa aggtggtagg gtcccgatct ggcgctgcaa
      781 cgccggtttt ccttccggcg ctcggccgta atttggccga tgtggaatgc gcttgccgac
      841 aaatgcagtt tcgtgacgtc gggcaggtat gaaacgttca gcggcagtaa ggtcgacgct
      901 tccatcgtcg ttctgagtga cttcaggatg aattgccttg tgagcgaggt aaacgagaaa
      961 cggtttgtcg tgtcggcgtt tgatgaactc cactgcatag ccgttaagaa tgtcagtggt
     1021 atagcccgta cgtttgacct gacggccatc ttcgttaatc ggcggatcga tgtaggtgcc
     1081 ttgtccctta aaactcaccc aacgatcgaa tcctggccgt ggcttctcgt cgtttcccat
     1141 gtgccacttg ccgatgaaag cgctctcgta accagcctgg tgtagtaatt gaggaaacgt
     1201 cacgagttga taactagcag ctgaccgatc gacgttatca
//
LOCUS       DATCGC010002023         1128 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_393477, whole genome shotgun sequence.
ACCESSION   DATCGC010002023 DATCGC010000000
VERSION     DATCGC010002023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1128)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1128
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_393477"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            430..>1128
                     /locus_tag="VIJ87_19270"
     CDS             430..>1128
                     /locus_tag="VIJ87_19270"
                     /inference="COORDINATES: protein motif:HMM:TIGR03709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0016776 - phosphotransferase activity,
                     phosphate group as acceptor [Evidence IEA];
                     GO_process: GO:0006797 - polyphosphate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PPK2 family polyphosphate kinase"
                     /protein_id="HEY5446558.1"
                     /translation="MKNYRIKPGLKLKLDKYDSDDTGKYKKTDQGKEKARTITADLIA
                     KLAGLQERLYANADCSLLIVLQGMDTSGKDGTIKHVMSGVNPQGCRVTTFKAPSNDEL
                     AHDFLWRVHKEVPPKGQIGIFNRSHYEDVLITRVHKMISAKVERQRLTQINEFEALLV
                     ENGTTIRKFFLHISKDEQKERLEARVRDPEKRWKFNQGDLEERQLWADYMREFEDVLS
                     VTSTDIAPWYIVPAN"
BASE COUNT          311 a          281 c          308 g          228 t
ORIGIN      
        1 cggcactaca ggtccgatgg ctggtagtgc cgggggcagt cggtatgctc gaacaccttc
       61 atccctcgtg ctgacggtcg cccggggcaa tctagaactt ggaatcccct actactgatg
      121 agcctggacc aggcccaggc atctctagac agcctaaaaa cagccatatc gcgaagagac
      181 tccgagtcac atgcatccaa gcgagctctc gagtgtgcct aaatcccccc actaggtacc
      241 tacctagttc cgtgaattcc gagcaagccc ctccatattg cttatgttgt cctaacgggt
      301 ttccagtcga caatggggaa ggaacgaagc cgaagtcgac agcaacaata atgcggactt
      361 attgctgttg tcacaaaggc cgagtgctac aagtaaatag acgagggaag gaaggggagg
      421 taagggggga tgaagaacta tcgcatcaag cctggcttga aactgaagtt ggacaagtat
      481 gactccgacg atactggaaa gtacaagaag acggatcagg ggaaagagaa ggccaggacg
      541 atcacagcgg acctcattgc aaaacttgcc ggacttcaag agcgtctata tgccaacgcg
      601 gactgctcgt tgctcatcgt gctccaaggc atggacacaa gcgggaagga tggcacgatc
      661 aagcacgtca tgtccggagt gaatccgcaa ggttgccggg tgacaacgtt taaggctccc
      721 tccaatgatg aacttgccca cgactttctc tggcgtgtcc ataaggaagt gcctcccaaa
      781 ggccagatcg gtatcttcaa tcggtcacat tatgaagacg tgctcatcac tagagttcac
      841 aagatgattt cagccaaagt agagcggcaa cgattgaccc agatcaatga gtttgaggca
      901 ttgctggtcg agaacgggac cactatccga aaattctttt tgcatatctc caaagacgaa
      961 cagaaagaga ggctggaagc tcgtgtccgc gatcccgaga agcgatggaa gttcaatcag
     1021 ggggatttgg aagagcgtca actgtgggcc gactatatga gggagttcga agacgtgctc
     1081 tcagtcacca gcacagacat tgcaccctgg tatatcgtgc ctgcgaat
//
LOCUS       DATCGC010002024         1014 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_393483, whole genome shotgun sequence.
ACCESSION   DATCGC010002024 DATCGC010000000
VERSION     DATCGC010002024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1014)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1014)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1014
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_393483"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..294)
                     /locus_tag="VIJ87_19275"
     CDS             complement(<1..294)
                     /locus_tag="VIJ87_19275"
                     /inference="COORDINATES: protein motif:HMM:NF015884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine synthetase"
                     /protein_id="HEY5446559.1"
                     /translation="MNAKTVLKYASDQGAKFVSVRFTDLPGSWQHLTFPIAELGEEQF
                     EDGFGFDASSIRGWAAIHESDMLLVPDATRFWMDPFSEQPTLCLIGNAVDPITK"
BASE COUNT          268 a          230 c          251 g          265 t
ORIGIN      
        1 tttagtgatt ggatcgacgg cattgccgat caagcacagg gttggttgtt ctgaaaacgg
       61 atccatccag aagcgagttg cgtctggtac aagtagcatg tccgactcgt gaatagcagc
      121 ccatccccga atcgacgaag catcgaagcc gaatccatct tcgaactgct cttcaccgag
      181 ttcggcaatg gggaaggtta ggtgttgcca ggaaccaggc aaatctgtga agcgaacaga
      241 aacaaatttg gcgccctggt cagaggcata tttcaaaaca gtctttgcgt tcatgttgtc
      301 tcctgaaaga atttgggagt gttgggggta cccttcgccc cgaggtagtt tatggtgcga
      361 agtatgacgg agtggctaac gaatctgcga aaacattcgt gcgtcatcga acgatgggcg
      421 ctatgaaaag ctgccattat agtgacgact ttattgaagt caaggcgttt tccgataatg
      481 atgaaataac aaatttctat tccgtaagcg agacaaatcc aacgagcaat tgcgccctgc
      541 tgacgattga tttagtcgca cttccacggt gaatttaagt ctcggataag acaaattggc
      601 gctgtgtttt ctatcatctg tattaaccga tcggcacctt gaaaaccttt atcccgcacc
      661 ttcctggtaa cgattgaatc tctagcaaag ggtttgagta gtagtctggg atttggtgtc
      721 ttcgcgttca gatagtggtc tggctccgcg ctagttttcg gtgaaaactc gcctgttttc
      781 acgcattttg gggttgatta gggcgttttc cgaaacaaaa aagttataga ccgacccgtc
      841 tgttttctgt tactctgcgc cattaaaagc gttccaccca gcccaaatcc gcaacacgac
      901 tcgggaaaat gtacaaccgc gttttaggca atcatatgga tactgaacga gtttcacacg
      961 taaggcagga gaccgccaat tgaccacggc aatcgagcaa acgctcgaaa ctta
//
LOCUS       DATCGC010002025         1216 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_63019, whole genome shotgun sequence.
ACCESSION   DATCGC010002025 DATCGC010000000
VERSION     DATCGC010002025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1216)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1216)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1216
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63019"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..794
                     /locus_tag="VIJ87_19280"
     CDS             <1..794
                     /locus_tag="VIJ87_19280"
                     /inference="COORDINATES: protein motif:HMM:NF019003.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050485 - oxidoreductase activity, acting
                     on X-H and Y-H to form an X-Y bond, with a disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycine/sarcosine/betaine reductase
                     selenoprotein B family protein"
                     /protein_id="HEY5446560.1"
                     /translation="GVEIIEDIDAWRQRYEAWAKSGSNRTDADYPFVKNRRAPFTAAR
                     RALPMLNLALVSSAGAYIDGTPEFATNDLTFREIPIEVESSDLRFAARGYDATAITQD
                     VNSQLPVERLLEFEENGVIGQLNGVFWSFSGYIPAADAVANDLAPRIVERLQRYEVQA
                     ALLIPASRLCHQTIGLVARAIEAAGIPTMTLAVVKDVVENVRPPRVALYNGEFGSVAG
                     KPNFPEHQRRILDEALRLIEPMDQPGIRKLVVELESAVELSRGER"
     gene            898..>1216
                     /locus_tag="VIJ87_19285"
     CDS             898..>1216
                     /locus_tag="VIJ87_19285"
                     /inference="COORDINATES: protein motif:HMM:NF040432.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446561.1"
                     /translation="MLKLIIRVIVGLVLLAIVYLLVAPVPITPAAWTPPVAPTLTGQY
                     EQNNRLAHTDRLSLGDGRSPEDVAIDSGGRIYGGFDDGRIVQIQPDGTQSHVFANTQG
                     RPLG"
BASE COUNT          271 a          333 c          319 g          293 t
ORIGIN      
        1 cgggcgtgga gattattgaa gacattgacg cttggcggca gcggtatgaa gcgtgggcca
       61 aatcgggttc aaacagaact gacgcggact atccattcgt aaaaaatcgt cgtgctccat
      121 ttacggcggc caggcgggca cttccgatgc tcaacctggc gctggtctcg tcggcaggcg
      181 cctacattga tggcactcct gagtttgcga ccaacgatct aacgtttaga gaaatcccta
      241 tcgaagtcga atcttcagat cttcggtttg ccgcgagggg atacgacgcg acggcgatca
      301 cccaggacgt gaactcacaa ttgccggttg aacgacttct cgagtttgaa gaaaacggag
      361 tcatcggcca gcttaacgga gtgttctgga gtttttccgg gtacattccc gccgcagacg
      421 cggtcgctaa tgacttagcg cccaggatcg tcgaacggtt gcagcgctat gaagtgcagg
      481 ctgccctgtt gattccggca tctcgtcttt gccatcagac gatcggcctc gttgcgcgag
      541 ccattgaggc cgcaggtatt ccaacaatga cattggcagt tgtgaaggac gttgtcgaga
      601 atgttcggcc tccgcgcgtc gctctttaca acggcgagtt cggcagtgtt gctggaaaac
      661 caaacttccc tgagcaccaa cgtcgaattc ttgatgaagc actgcggttg atcgaaccga
      721 tggatcaacc aggtattcgc aagcttgtag ttgaactaga gagcgcggtc gaattatcac
      781 gcggcgaacg ctaactagtt tcgcttccct ttagtagcta ccttgattat acggacgcgc
      841 tcttctggga ccgcaggcgt cctcgcctgc cttccacgaa taaacgcccc ctcatagatg
      901 ctcaaactaa tcattcgcgt aatcgtcggc ttagtcctac tggctattgt ttacttactc
      961 gttgccccag ttccgatcac tccagcagcc tggacacctc ccgttgctcc aacattgact
     1021 ggtcaatacg aacagaacaa tcgtcttgct cacactgatc gcttatcgct tggcgacggc
     1081 cgttcacccg aagatgtcgc aattgattct ggaggtcgca tttatggcgg cttcgatgac
     1141 ggtcgaattg tccagataca accggacgga actcagtcgc acgtcttcgc taacacacaa
     1201 gggcgacctt taggtt
//
LOCUS       DATCGC010002026         2813 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_96506, whole genome shotgun sequence.
ACCESSION   DATCGC010002026 DATCGC010000000
VERSION     DATCGC010002026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2813)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2813)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2813
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96506"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            68..223
                     /locus_tag="VIJ87_19290"
     CDS             68..223
                     /locus_tag="VIJ87_19290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446562.1"
                     /translation="MLNFFRDESGLELSEYAVAAALVAIAAVIAFTTLGNVISAKINT
                     LAATISG"
     gene            338..859
                     /locus_tag="VIJ87_19295"
     CDS             338..859
                     /locus_tag="VIJ87_19295"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: protein motif:HMM:NF013632.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A24 family peptidase"
                     /protein_id="HEY5446563.1"
                     /translation="MSLAPAQIIFLIPLAIIIAYYDVRYRRIPNPFVLATFISGVAIN
                     AIFGGLSGTLASCVGCGLAFVLMFLLHVFGAMGAGDVKLFAAIGAVLGAHMVLPTFLV
                     VILTGGLLAIISVIRAGAVFTTMHRVLQILVGLLPGWEMPRFAVPADRRTTIPYGVAI
                     TIGSLISTVIFRV"
     gene            900..1799
                     /gene="cpaB"
                     /locus_tag="VIJ87_19300"
     CDS             900..1799
                     /gene="cpaB"
                     /locus_tag="VIJ87_19300"
                     /inference="COORDINATES: protein motif:HMM:TIGR03177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp pilus assembly protein CpaB"
                     /protein_id="HEY5446564.1"
                     /translation="MRNKRFFIVLVGALLFGLLAAVSVSRYLSSAQATTKEFNRVTVA
                     KVPIPVGTKLIPEQLMVVQFSKESTPDGAFESPDKLLGRVAVTNIAVREPVTEARLAP
                     EGTAAGLSAIIPEGYRAMTVGVNDVVGISGFIMPGTLVDVVVVIDPQQSNGVQQGPIS
                     KIVLQNIKVLANGQNIDKPENQRDANSVKSVTLLVTPEQAEKLALASSEGKLQLVMRN
                     SIDQGDEQTKGIDKRGLLGGDRAVPAPEPGSLKSEQPKVEPKVAPHRVRAAAETKPAA
                     APAPPRASVEMIEGAKKRSVDFP"
     gene            1869..>2813
                     /locus_tag="VIJ87_19305"
     CDS             1869..>2813
                     /locus_tag="VIJ87_19305"
                     /inference="COORDINATES: protein motif:HMM:NF025014.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein N-terminal
                     domain-containing protein"
                     /protein_id="HEY5446565.1"
                     /translation="MHSRSTITRRASLILASLVIVLISSVTHAQETSYKASFKQNKEA
                     IAVNVLVGQSRVINFDRPVGRFSVSNPEIAEAVLVTPDQVLVNGKGFGQVNFIAWEQT
                     GGEFLVFDVYVRANLSLIDSQMRALFPKDDIRLSQANGSVVMSGSVSDPKIAAQAQSV
                     VEAAGFKSVNMLASPVKGMTQVQLQVRVAEVNRSRATDLGLSYAYQASPGTGTYLNSG
                     QGPSSLGNVVNGAMQGSLSSALNLFVMAGNTMSMIRALQTQGALRELAEPNLIAMDGS
                     QASFLAGGEFPVPVVQGGGGGQSSVSIIFKEYGVRLNFK"
BASE COUNT          662 a          713 c          750 g          688 t
ORIGIN      
        1 aattcgctaa agcgcgccct ggctcttcgt tattgcgcga gaaacacatt cggaaaggag
       61 caaggacatg ttgaattttt ttcgagatga aagcgggctt gaactatcag agtacgcggt
      121 tgccgcagcc ctcgtcgcga tagcagcagt gattgccttc accactcttg gaaacgttat
      181 ctctgccaaa atcaacaccc tcgccgcaac catcagcggc taattccaaa tcggaatttc
      241 tggcgcgctg ggtgaggtta ctcacctaag cgcgctgccg cccctttggc tcaccgatag
      301 ctctttccag aaacaaagct cgaacgacac cagacaaatg tcattagcgc ctgcacaaat
      361 aattttcctt atccccctgg caatcatcat tgcctattac gacgttcgct atcgtcgcat
      421 tcctaatccg tttgtactgg cgacctttat tagtggcgtt gccatcaatg ccatctttgg
      481 aggcctgtcc ggaactctcg caagttgtgt cgggtgcggg ttggcttttg ttctgatgtt
      541 tctgctccac gtgtttggag caatgggagc aggtgatgtc aagcttttcg ccgccattgg
      601 agctgttttg ggtgcgcaca tggtcctgcc aacttttctg gttgtgattc tgacaggtgg
      661 cttacttgcg atcatttcag ttattcgagc cggggccgta ttcacaacaa tgcaccgtgt
      721 tttacagata ctcgtcgggc ttttaccagg atgggaaatg ccgagatttg ccgttcccgc
      781 agatcgccga accacgattc cttacggcgt agcaatcaca atcggcagcc tcatttcaac
      841 cgttatcttt cgcgtgtgag cgcgatttcg atcatgactg atcacatgga gagtcaacta
      901 tgcgcaacaa acgctttttc attgttttag tcggagcact tcttttcgga ttgctggcag
      961 ctgtgtcagt cagtaggtat ttatcgagtg ctcaagccac tacgaaagaa ttcaaccggg
     1021 taactgttgc caaagtgccg attcctgtgg ggacgaagct cattcccgaa cagttgatgg
     1081 tggtccaatt ttcaaaagaa tcaacgcctg atggggcatt cgaatctccg gacaagttac
     1141 tgggacgcgt agcagtcacc aacatcgcag tgcgagaacc cgtcactgaa gcgagactcg
     1201 caccggaagg tactgccgct gggctgtcgg caattattcc tgaaggttac cgagcgatga
     1261 cggtcggggt aaacgatgtg gtcggcatct caggtttcat tatgcctgga accctggtgg
     1321 acgttgtggt ggttatcgat cctcagcaga gcaatggtgt gcagcaggga ccaatatcca
     1381 agatcgtctt gcagaacatc aaggtgctgg cgaatggtca gaacatcgac aagcctgaaa
     1441 atcagcgcga tgcaaatagc gtcaagtcgg taacgcttct tgttacacca gaacaagcag
     1501 agaaactggc gctcgcatcc agcgaaggta agttgcagct cgtcatgcgc aattcaattg
     1561 atcaaggtga cgaacaaacc aagggcatcg acaagcgcgg attgcttggt ggtgatagag
     1621 ctgttcccgc acccgagccc ggttcattaa agagtgaaca acccaaagtt gagccaaagg
     1681 ttgcaccgca tcgcgtccgc gcggcggctg aaactaagcc agccgcggca ccggcaccgc
     1741 ctcgcgcatc tgtggagatg atcgaaggcg caaagaaacg aagcgtcgat ttcccgtaaa
     1801 tgtgcatgga gtgcgtgcgg gagttgatta acttattcat cacaggaagc caaaggagct
     1861 agagaatcat gcacagccgt tccacgatca cacgccgggc cagtctaata ctggcgtcat
     1921 tggtcatcgt tctaatcagt tcagttactc acgcgcagga gacctcctat aaggcttcct
     1981 tcaaacagaa taaggaagcg atagcggtca acgtccttgt aggacagtcg cgtgtcatca
     2041 actttgacag accagttgga cgattctccg tttcaaatcc tgagatcgcc gaggctgtgc
     2101 tcgttacccc tgatcaggtg ctcgtcaacg gtaagggctt tgggcaggtc aactttatcg
     2161 cctgggaaca aacgggcggc gagtttctgg tgttcgatgt ttacgtgcga gcaaatcttt
     2221 ctttgatcga ttcgcagatg agggcacttt tcccgaagga cgacatacgc ctgagccagg
     2281 ctaatggctc ggttgtcatg tcaggaagcg tttccgatcc gaagattgca gcacaggccc
     2341 agagcgtcgt ggaggcagct ggattcaaga gcgttaacat gcttgcttct ccagtaaaag
     2401 gcatgactca agtgcagttg caggttcgag tagcggaagt taaccgaagt agggcgactg
     2461 atttgggcct ttcctatgct tatcaggcca gccccggcac cggcacttat ctcaacagcg
     2521 gccagggtcc cagttcattg ggcaatgttg tcaacggcgc tatgcaaggc tcgctctcaa
     2581 gcgcactgaa tcttttcgtg atggccggta acaccatgag catgattcga gcgctacaga
     2641 cacaaggtgc tctgcgcgaa cttgctgagc cgaatttgat cgcgatggat ggctcacagg
     2701 cgagttttct cgctggcgga gaatttccag ttcctgttgt tcagggtggc ggcggcggac
     2761 agagttctgt ctcaattatc ttcaaggaat acggagttcg cctcaatttc aaa
//
LOCUS       DATCGC010002027         2120 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_364686, whole genome shotgun sequence.
ACCESSION   DATCGC010002027 DATCGC010000000
VERSION     DATCGC010002027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2120)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2120)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2120
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_364686"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            217..768
                     /locus_tag="VIJ87_19310"
     CDS             217..768
                     /locus_tag="VIJ87_19310"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HEY5446566.1"
                     /translation="MRCVWCDSEYTFTGGEHIPLDDVVGQVQAFGCHLVEITGGEPLA
                     QKSAFVLISKLCDQGFEVLIETGGYVSTEAVDSRAKIILDVKCPASGEESRNDWSNLR
                     RLRADKDEVKFVVADLDDWKYAKKVIGEYDLERCTKAILISPAWGQMDLKTLADEVAG
                     SGLQVRMQLQLHKYIWGPDVHGV"
     gene            768..1508
                     /gene="queC"
                     /locus_tag="VIJ87_19315"
     CDS             768..1508
                     /gene="queC"
                     /locus_tag="VIJ87_19315"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: protein motif:HMM:NF018242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HEY5446567.1"
                     /translation="MGGSEEPTEVVKDELNRNGLAICLVSGGMDSCVTAAIANEENDE
                     LAFLHVSYGQRTETRERESFEKLADHYGVKSRLVVSLEQLARIGGSSLTDTRIPVSQA
                     DLSAQGIPSSYVPFRNAHLLAAAVSWAEVQQASSVYIGAVAEDSSGYPDCRPEFYDAF
                     QQVVNVGTKPETRIEIRTPVIQMKKSEIVAKGVELSAPLHLTWSCYRESKLACGTCDS
                     CALRLRAFRMAGINDPIPYVLDSNRFAY"
     gene            1619..>2120
                     /locus_tag="VIJ87_19320"
     CDS             1619..>2120
                     /locus_tag="VIJ87_19320"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HEY5446568.1"
                     /translation="MFHRYFFGVLAVAALVVSAAVTTVAQVGELRGHVFMQQADGQKV
                     PLADAQIDVFRTDVKGEYKTKTNKKGEFVFAGLPFVGTYTVAASHPTAQPNFITGVRA
                     GKDIPADVVVVPGDGKRLTADELKGAATKSASTPANGGGSAPANTGESAADKAKREEL
                     IKKNKEI"
BASE COUNT          525 a          489 c          588 g          518 t
ORIGIN      
        1 actcttcaga gttgccgcga ttgctgcggt ggaacccttg ttttgacagc ctccatcacc
       61 tgagctagat tgcgaagtac tccatttggc cttcgatgaa aggtagtgta gaagccttaa
      121 atgatgcttc gggtcacaga aatttttcgc tctattcaag gtgaatcaac tcacgccggg
      181 cgtccgtgca cgtttgttag gttgaccggg tgtccgatgc gctgtgtttg gtgcgacagt
      241 gagtacacgt tcactggcgg agaacatatt cccctcgacg atgtagtcgg ccaggtccag
      301 gcgttcggct gccacctggt tgaaattaca ggtggtgaac cactggccca aaagtctgcg
      361 ttcgtcttaa tcagtaagct ttgtgatcag ggtttcgaag ttctaattga gactggtgga
      421 tatgtctcta cagaagctgt ggattcgcgc gcgaaaataa ttcttgatgt gaagtgtccg
      481 gcttccggtg aagaatcgag aaacgattgg tcaaatctaa ggcgcctacg tgctgacaaa
      541 gacgaggtca agtttgttgt ggcagatctt gatgattgga aatacgcgaa gaaggtgatc
      601 ggcgaatacg atcttgagcg ttgcactaaa gcgattctca tctctccagc ctggggacaa
      661 atggatctga aaacactcgc agacgaggtt gcaggaagcg gattgcaagt tcgcatgcag
      721 cttcagcttc acaaatatat ctggggtcct gacgttcacg gtgtgtaatg ggtggctctg
      781 aagaaccaac tgaggtcgtg aaggacgaac tcaaccgcaa cggactcgcg atctgtcttg
      841 tgtccggtgg catggattcg tgcgtcacgg ccgcgattgc aaatgaggaa aacgatgaac
      901 tggcgtttct ccatgtctcg tatggacagc gaactgagac tcgagagcgc gagagcttcg
      961 agaaactagc tgaccactac ggggtgaaat ccaggctcgt agtatcgctc gaacaactcg
     1021 ctcgaatcgg aggatcgtcg ttaacggata cccgtattcc ggtcagccag gccgatcttt
     1081 cagcgcaagg gattccgtcg agctacgttc ctttcagaaa cgctcatctg ctggctgcgg
     1141 cggtgagttg ggcggaagtg caacaagcga gcagcgttta cattggtgcg gtggccgagg
     1201 attcatcggg ttatcctgat tgtcgcccgg agttttatga cgcgtttcag caagtggtga
     1261 atgtcggaac aaaaccggaa acgcgaattg agataagaac gccagtgatt caaatgaaaa
     1321 aatctgaaat cgttgcaaaa ggcgtggaac tttcggcccc gctccacttg acctggtcct
     1381 gttatcgcga gtctaaactt gcttgcggaa cctgcgactc ttgcgcgcta agattgaggg
     1441 cttttcgcat ggcgggaatc aacgatccca tcccctatgt gcttgacagt aatcgtttcg
     1501 cttattaagt ttagggcgct tctcagttga ttatttttac aaccagcaaa gataaggtcg
     1561 catcctacgg tcgctctcac gggaggcttg tgcccatact aattggagga atcggtcgat
     1621 gtttcataga tactttttcg gagttctcgc agttgccgct cttgttgtgt cagctgccgt
     1681 aacaacagtt gctcaagtag gggaactacg cgggcacgtt tttatgcaac aagcagatgg
     1741 tcaaaaggtt cctcttgctg atgcgcaaat cgacgtattc cgcacagacg tgaaaggcga
     1801 atacaaaaca aaaaccaaca agaagggcga gtttgttttt gctggtttgc cgttcgttgg
     1861 cacttatacc gttgccgcaa gccatcctac cgcccaacca aacttcatta ccggagttag
     1921 ggccggaaag gatattcccg cagatgtcgt agtggtacca ggtgatggca aacggttgac
     1981 agcagatgag ctcaaaggcg ctgcaactaa gagtgctagc acacctgcaa atggtggcgg
     2041 ttccgcccca gccaatactg gtgaaagtgc ggcagacaag gccaagcgtg aagaactgat
     2101 aaagaagaac aaggagatcg
//
LOCUS       DATCGC010002028         1465 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_31648, whole genome shotgun sequence.
ACCESSION   DATCGC010002028 DATCGC010000000
VERSION     DATCGC010002028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1465)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1465)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1465
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31648"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            444..821
                     /locus_tag="VIJ87_19325"
     CDS             444..821
                     /locus_tag="VIJ87_19325"
                     /inference="COORDINATES: protein motif:HMM:NF016408.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HEY5446569.1"
                     /translation="MSTQAVLSSGERQRININKDNWLGFVGDVVNFTGEVCFKSMLRI
                     DGHFSGNVTSPDGTLIVSTGAEVTKAVIKVAVAKINGTVEGDIHASKELVLGRTANVK
                     GKVAAPALIVEEGARFNGSCRRT"
     gene            complement(822..>1465)
                     /locus_tag="VIJ87_19330"
     CDS             complement(822..>1465)
                     /locus_tag="VIJ87_19330"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEY5446570.1"
                     /translation="TRELARRAGPKGAAVGADIDETKLQLARDETEKLGITNVEFRSI
                     DIRERPETQEFDVVYARFLLTHLSDPAAAVDCFLEFLKPDGLVIVEDIDFSGCFVHPP
                     SKAFDRYHEIYCSAVRKRGGDPNIGPRLPLMLNNAGLQNVEVMVVQPMGLEGEVKLLG
                     PLTMEAIVDAAIAEHLTTNEEATEIIAALYEYAADSSTLAGTPRIVQSWGRKS"
BASE COUNT          348 a          386 c          362 g          369 t
ORIGIN      
        1 tccagcgagt ggactcgcga gttcgcgcac agtgtcgaac gttattcgtt gattcttttg
       61 tccaggcacc ttggccgtat gcattagctt gtggcacaga cttcagtctg tgtttcttgt
      121 tgattagctg ccggaccgtc ctgagttctt ggagtgtggt gctttgtcac cgctttgtta
      181 aagccccgcc ttcaatgaaa gtcgatgtgt accaaagcgg tgacgaggca ccgcactcca
      241 aggtccgcaa tcggcaatga atttaacggc aatcgaatcg taacattctc tcgcgtagct
      301 ccagtgctat attcctcgca ggtaagcaat tttttctttc tccctgacac aatagaggcg
      361 tagcggctct cggggcggca gtctccatct acctcacgac tttgcattac caataacttg
      421 aaagcgtgaa agaaggaccc ccagtgagca ctcaggcagt tttgagcagc ggcgaacgtc
      481 agcggatcaa catcaacaag gacaactggc tcggttttgt cggtgacgtt gtaaatttca
      541 cgggtgaggt ttgttttaag tcgatgctta gaatcgacgg tcatttttcc ggtaacgtca
      601 catcacccga tggcactttg atcgtcagca ccggagccga agtaactaag gcagtcatca
      661 aagtcgcagt cgcaaaaatc aacggcaccg tcgagggcga cattcacgca agcaaagaac
      721 tcgtgcttgg acgaactgcg aacgtgaaag gcaaagtcgc tgccccggct ctgatagttg
      781 aagaaggagc gcgattcaac ggtagttgcc ggcgaactta gctacgattt ccttccccat
      841 gattgaacta tgcgcggtgt tccggcgagc gttgatgaat cggccgcata ttcgtaaaga
      901 gctgcgatta tctccgtggc ttcctcatta gttgtaaggt gctctgcaat tgccgcgtca
      961 acaattgctt ccatcgtcag cggcccaaga agtttgacct ctccttcaag acccatcggc
     1021 tgaacaacca ttacttcgac attctgtaat cccgcattgt ttagcatcag cggtaatcgt
     1081 ggaccgatgt ttggatcgcc gcctcgctta cgtactgcac tacagtaaat ctcgtgatag
     1141 cgatcaaaag cttttgaagg aggatgaacg aaacaaccgc tgaaatcgat gtcctcaact
     1201 attaccagac catcgggctt caggaattca agaaagcagt cgaccgctgc ggcgggatcg
     1261 cttaagtgcg tcagcaaaaa ccgcgcatag accacgtcaa actcctgggt ttcaggtcgc
     1321 tcgcgaatat cgatcgaacg aaactcgaca ttcgtaattc ccagtttctc cgtttcgtct
     1381 ctggcgagct gaagttttgt ttcatcaata tcagcgccca cggctgcacc tttcggcccg
     1441 gcacgtcgcg ccaattccct tgtga
//
LOCUS       DATCGC010002029         1352 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_330727, whole genome shotgun sequence.
ACCESSION   DATCGC010002029 DATCGC010000000
VERSION     DATCGC010002029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1352)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1352)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1352
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_330727"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(162..596)
                     /locus_tag="VIJ87_19335"
     CDS             complement(162..596)
                     /locus_tag="VIJ87_19335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003110349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEY5446571.1"
                     /translation="MTNVSGWLFWALLSAAFAALTAIFAKVGLEGVDSDFATLIRTSV
                     IIIVLALFVYFTGKWISPLQLSSHTVLFLVLSALATGASWVCYFRALKIGAASNVAAI
                     DKLSVVLIAIFAFAFLHERPSLREWIGILMVGLGLLVIAVKR"
     gene            916..1281
                     /locus_tag="VIJ87_19340"
     CDS             916..1281
                     /locus_tag="VIJ87_19340"
                     /inference="COORDINATES: protein motif:HMM:NF015735.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HEY5446572.1"
                     /translation="MKYLLLIYDQEQLWGKLGEAEQGAIYGEYRKFSQSIQDSGHYLG
                     GAQLHPVASATSVRIRDNEQLVTDGPFAETHEQLGGYYLIEAKDLDEATAIAARIPSA
                     RLGTIEVRPLVERPAAANA"
BASE COUNT          362 a          342 c          350 g          298 t
ORIGIN      
        1 actgtggcgc tgagatgaat catcacgcag cgaaagtcga ttacgacgtc gacgatgaga
       61 aggtgatcga tcctgttttt ggcggcgtgc tgaaggaagc ttacttttgt cctaagtgtg
      121 gtcacacaga attgaaagcg gcctcgaagt aaagcgtcac gttaacgttt gactgcaatc
      181 actagtagtc cgagtccaac catcaagatg ccgatccact cgcgcaacga tgggcgttca
      241 tgcaaaaaag caaacgcgaa aattgcgatc aggacaacac ttaacttgtc gatcgcggcg
      301 acgtttgaag cggcaccaat cttcagcgct cgaaagtaac aaacccatga agcacctgtg
      361 gctaatgcag aaagtacgag aaataaaact gtgtgagatg aaagctgtaa tggactgatc
      421 cacttgcccg tgaagtagac aaacagcgcg aggacaataa tgatgacgct cgtgcgaatc
      481 aacgtcgcaa agtcggagtc aacaccttcc agacctacct tcgcgaaaat tgcagttagt
      541 gccgcaaacg ctgccgaaag aagcgcccag aagagccaac ctgagacatt ggtcatagtg
      601 cgtggaattg tacagctatc gattcccttt agtagctcct ttgactgaaa gaggctcttc
      661 caactagaac aggttgggaa gggtggttta cccccgctgg cctgacaaaa tgaaactccg
      721 atgtagctct tagttaggcc agcggggtaa accgcccttc ccaacttgtt ctgcattcaa
      781 ttccttttct tcgatggccc tagcttttgc aagaggcacc aaagggtatc gaaaagattt
      841 ttgggcgctg tcgatctagc gaaactcgtc cgtcgtatag gtgaagtcga aaactaaact
      901 taggagatta aaccgatgaa atacttgctt ctcatttacg atcaagaaca gttgtgggga
      961 aagttgggcg aagccgagca gggtgcgatt tacggtgaat acaggaagtt ctcgcagtca
     1021 atccaggaca gcggtcacta ccttggtggg gcacaactcc atccggtcgc gtccgcgaca
     1081 agcgtacgca ttcgcgacaa cgaacaactg gttactgatg gtccgtttgc tgaaacccat
     1141 gaacaactcg gtggttatta cctgatcgaa gcgaaggatc tcgatgaagc tactgcgatc
     1201 gccgctcgca taccctcggc gcgcctgggc acgattgagg ttcggccatt ggtcgaacgc
     1261 cccgcagcgg ccaacgcttg aacgattccc tttagtaacc ccgctcgcgc aacagtgatc
     1321 gctcttctgg gaccgcaggc gtcctcgcct gc
//
LOCUS       DATCGC010002030         1468 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_426294, whole genome shotgun sequence.
ACCESSION   DATCGC010002030 DATCGC010000000
VERSION     DATCGC010002030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1468)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1468)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1468
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_426294"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..404
                     /locus_tag="VIJ87_19345"
     CDS             <1..404
                     /locus_tag="VIJ87_19345"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HEY5446573.1"
                     /translation="SRSALRPGGRVVAYGLTASLRGGRLASGRSGRRHRFRGIAIFGL
                     YIAGGWLLPGRKRVVPYSIQWLKRLRPALFQQDLIALFDLLQQRKIEPLIAQRFPLAE
                     ARRAHEVLGKGGVTGKIVLVLNGSSLESGAA"
     gene            707..1132
                     /locus_tag="VIJ87_19350"
     CDS             707..1132
                     /locus_tag="VIJ87_19350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEY5446574.1"
                     /translation="MAKQTKTLQKKTLSAPDEVRTFDKGKVEVATVGTVTFGRGSFEP
                     GWKWSESVKPIVKTEYCEAPHIQYHVSGRLRIRMADGSEEEFGPGDVGITPPGHDAWV
                     IGDEPVVVIDISGMKEYAKPAVKKATRKPPKRKTNKKKR"
BASE COUNT          360 a          356 c          428 g          324 t
ORIGIN      
        1 gttcccgcag cgctctccgt cctggcggga gggtagtagc ctatggcctt accgcgtcac
       61 tacgcggggg acgattggct tcgggtcgtt caggtcgccg gcatcggttt cgtggaatcg
      121 ccatcttcgg gttgtacatc gctggcggct ggcttctccc gggccggaaa cgggtggtcc
      181 cttacagcat ccagtggctc aaacggttga gaccggcatt gtttcaacag gatttgatcg
      241 ccttgttcga cctgcttcaa cagcgaaaga tcgaacccct aatcgcgcag cgatttccgc
      301 ttgcggaggc aagacgcgct cacgaggtgc tcgggaaggg aggcgtgaca ggcaagatcg
      361 tgctcgtgct caacgggtca tcgcttgaat caggagcggc gtaacaacgg catgcagcgg
      421 acggcggccg atgcgacgag acgccgccgc gcgcctgagc tctcacgtta cgcaacggat
      481 tgaattctcc tacaactcaa tcacgagaga tttgcctgac gtgtcacagt tgtcagacac
      541 agatggatcg taatcaatca gcgaggcatt gagagactat ctcgcctcgc aagtgaatct
      601 gagcttagaa gaatatctgc tttagataga gttcgacatt tgcttcatcg gagagtaaca
      661 atttaacgct cgaatccatc aacccacctg aataggagaa atcaatatgg ctaaacaaac
      721 aaaaacccta cagaagaaga cactgagcgc tcctgacgag gttcgaacat tcgacaaggg
      781 caaagttgaa gtggccacgg ttggtactgt cacgtttggt agggggagtt tcgagccggg
      841 gtggaaatgg tctgagtcgg ttaaaccgat agtaaagacg gaatactgtg aagctccgca
      901 tattcagtat cacgtctctg gtcggctgag gataaggatg gccgacggaa gcgaagagga
      961 gttcggtccg ggagatgtgg gtataacacc tcctggtcat gacgcctggg tgattggcga
     1021 tgagccggtg gtggtgatcg atatttccgg tatgaaggaa tacgccaaac cagcggtcaa
     1081 aaaggccact agaaagcccc cgaaacgaaa gacgaacaaa aagaaacgct gaggcatccc
     1141 agaagcaaac gcgcggtcaa ttcgtctttt tatcatagag gattgaactg aagcgtcaat
     1201 ctaatgaatt tcacgctgaa cgcaaactac cttggataga agtatgggca ttagaggttt
     1261 acgactacgg ctcgttgcat caagtggact ggttgttttg ttaaagtcaa aggagcgggc
     1321 gctatgaaag tattggccct ggtttatccc ggcatgaccc tgctggactt ggtcggtcct
     1381 cttcaggctt ggagtttctt gcccggctac gaagttcagt atgcctggca ccgttctggt
     1441 gcagtgccca cggactgcgg cctcagcg
//
LOCUS       DATCGC010002031         1230 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_260714, whole genome shotgun sequence.
ACCESSION   DATCGC010002031 DATCGC010000000
VERSION     DATCGC010002031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1230)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1230)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1230
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_260714"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            136..>1230
                     /locus_tag="VIJ87_19355"
     CDS             136..>1230
                     /locus_tag="VIJ87_19355"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY5446575.1"
                     /translation="MTPERWQQVKAIFNSAIQYSPGERSSFLSQACSGDDYLRSEVES
                     LIASHEKSGEFIDDPAYQRATWLADEKMELKPGQNLGSFQVLSFISRGGMGEVYLAQD
                     LRLNRKVALKILPSTFTKDIDRLRRFEQEARSASALNHPNIITIYEIQQLASSHVIAT
                     EFVEGETLRERIRRSPLSLSEALNVSIQVADALSAAHKAGIIHRDIKPENVMLRPDGY
                     IKVLDFGLAKLSEQATAAVAAEAPTIQVRTGSGIVIGTAGYMSPEQARGIAVDGRSDI
                     FSLGAMIYEMVARRKPFEGDTPSDTLASILKTDPPPLLQLLPRLPPELNRIVSKSLRK
                     DREERYQVVKDLWLDLKSLKQELEFQEKLER"
BASE COUNT          296 a          300 c          344 g          290 t
ORIGIN      
        1 cgtcggaaag gcggagcctt tccgcacggg atgcggcata gccgcgggct tgctaaaaca
       61 accggaagaa gctttacaaa taaatgtgag ggaacgccct cccgccctac gcgttatacg
      121 tagaacccaa aatttatgac ccctgaacgt tggcaacagg taaaagcgat cttcaattcg
      181 gcgattcaat attcgcctgg ggagcgcagc tcgtttcttt cgcaggcttg ttccggcgat
      241 gactacctac ggagtgaagt cgagtcgttg attgcctcac atgaaaagag tggggagttc
      301 atcgacgatc cggcgtacca acgcgcgaca tggttggctg acgaaaagat ggagctaaag
      361 cccggtcaga acctcgggtc gtttcaggtc ctctcgttta ttagtcgggg tggaatgggc
      421 gaagtctacc tggcgcagga tctacgactg aatcgcaaag ttgcgctgaa gattttgccg
      481 tcgacattta cgaaagacat tgatcgactg cgacggtttg agcaggaagc tcgttccgcg
      541 tcggctttga accatccgaa catcattacg atttatgaga ttcagcaact ggcttcgagt
      601 cacgtaattg cgacggagtt tgttgaaggt gaaactttac gcgagcgaat cagacgctct
      661 ccgctttcgc tctcagaagc tctcaacgtt tccatccagg ttgctgacgc actttccgcg
      721 gcacacaagg ctggaatcat ccatcgggac atcaagcccg aaaatgtgat gctgcgtccc
      781 gacggctaca taaaggtctt ggattttggc ctcgccaagt tgagtgaaca agcgacggct
      841 gctgttgcag ctgaagcacc aacgatccag gtgcgtacag gctcgggaat agttattgga
      901 acagccggct atatgtcgcc ggagcaagcc cgcggtattg cggttgatgg acggtctgac
      961 atttttagtc tcggcgcgat gatttatgaa atggttgcgc gtcgtaagcc gtttgaaggc
     1021 gacacaccga gcgacacatt ggcctcaatt ctgaaaactg atccgccccc gttgttgcag
     1081 ttgcttccgc gattgccgcc tgaactcaat cgcattgttt cgaagtctct cagaaaagat
     1141 cgcgaagagc gttatcaggt ggtgaaggat ctctggttgg acttgaagtc gctcaagcag
     1201 gagttggagt ttcaagagaa gcttgaacga
//
LOCUS       DATCGC010002032         1150 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_461966, whole genome shotgun sequence.
ACCESSION   DATCGC010002032 DATCGC010000000
VERSION     DATCGC010002032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1150)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1150)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1150
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_461966"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..818)
                     /locus_tag="VIJ87_19360"
     rRNA            complement(<1..818)
                     /locus_tag="VIJ87_19360"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          269 a          356 c          232 g          293 t
ORIGIN      
        1 aggactaccg gggtatctaa tcccgtttgc tcccctggcc ttcgtgcctc agtgtcagga
       61 actgtccaga gacccgcctt cgccactggt cttcctcatg atctctacgc atttcactgc
      121 tacaccatga attccagtct cgtctccagt cctcaagcac cgcagtatcg aatgcagttt
      181 cggagttaag ctccgaaatt tcacacccga cttacggcgc cacctacaca ccctttacgc
      241 ccaatgaatc cgaacaacgc ttgagacctc tgtattaccg cggctgctgg cacagagtta
      301 gccgtccctt cctcttctga tactatcaag ccggtagcag ttacgtaccg acacttgttc
      361 ccaaatgaca ggagtttaca acccgaagac cttcatcctc cacgcggcgt cgctcgatca
      421 gggtttcccc cattgtcaaa aattctcgac tgctgccacc cgtaggtgtc tggaccgtgt
      481 ctcagttcca gtgtgactgg tcgtcctctc agaccagcta cccgtcaaag ccttggtgag
      541 ccgttacctc gccaactagc tgataggccg cgggctcctc aaaaagcagt agcttgcgcc
      601 acttttgatt tcgggaagat gtctcccctg atcacatgcg gtattaattc ggctttcgcc
      661 gagctatccc ccactttaag gcagattgcc cacgtgttac gcacccgttc gccactagac
      721 ttttccctgt attgctacag gaaaaaatct cgttcgactt gcatgtctta tccacgccgc
      781 cagcgttcgt tctgagccag aatcaaactc tccgttaaaa acgtcaggcg atgaatctca
      841 gcagactcat caccaaagtt tgaaaccgac gccgctatag catcggttga tctgactttg
      901 tataccgcgt gacgaatcga tttctcgatc cgttttacgc gggttcgtcg atctactaaa
      961 tatttcgatc aaagaaacca acactcaagc cgctaagcct gagctggtaa cgcacaattc
     1021 aattttcgct gacttgctca tctcggattt cacacgtcgt gtgtgccttt ttgaaatccg
     1081 aaaccaaact atcaaagatc aaccgttcca cccgagtaca gcagaaaacc cagctctgcc
     1141 cattaacgaa
//
LOCUS       DATCGC010002033         2111 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_229463, whole genome shotgun sequence.
ACCESSION   DATCGC010002033 DATCGC010000000
VERSION     DATCGC010002033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2111)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2111)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2111
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_229463"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1282
                     /locus_tag="VIJ87_19365"
     CDS             <1..1282
                     /locus_tag="VIJ87_19365"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY5446576.1"
                     /translation="LSGIVFGIAPALQVSKPNLNNALKEGGRSGSGGSHRLRSSLVVF
                     EIALSLILLVGAGLLVRSFLSLMKTNPGFTPDHLMTMTLVLPRAKYKEDAQLTSFYSE
                     LIQRADTVPGVQSAAVVNFIPLGGSNASDAFLVEGLPEPPPGQEYEGRYRVCTPDYFQ
                     TMGIAVLRGRTFTAADKEGAAPVAIINETMARKYWANGDAVGKRFRFLGALEKRPWIE
                     IVGIVQDVKHDLNVPVTPDYYLPYAQDAWSGMVLVARTTVDPASTASALRQQVWAIDK
                     DQPVFDVKTMEELRSISVALYSFSSVMLAIFAGVALILAAVGIYGVMAFAVTQRTQEI
                     GIRMALGAKGTDVLKLVLRHGMSMALLGIGIGLAGAWALTRFLSKLLVGISTTDLLTF
                     SIVTFTLLVAALLACYLPARRATKVDPLVALRYE"
     gene            1368..>2111
                     /locus_tag="VIJ87_19370"
     CDS             1368..>2111
                     /locus_tag="VIJ87_19370"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5446577.1"
                     /translation="MDNLLKDIRYGLRSLMKRPAFTAVAVITLGLGIGVNTAIFSVIN
                     AVLLKPLPYADPSRLVSFRSNQSALDLADVESQTKTFSSLGGMVVQPLAYTAGREPLQ
                     VQIGQVTGGFFSTLGVQPQLGRFISNEDDKNGAPYVVVLGHSLWQKQFGADPQILGQS
                     IPLSGNIYTVIGVMPATFATPTINTEAWTPVHVSNPLAANFRGVHFLRSYGRLAPGVS
                     IEQARAEMQLIDHNLAAQYPADNKNRTTVL"
BASE COUNT          455 a          546 c          558 g          552 t
ORIGIN      
        1 tctaagtgga attgtatttg gaattgcccc cgctctacag gtatcaaaac caaatctcaa
       61 caacgcgctg aaggaaggtg gcagatctgg ttcaggcgga tcgcaccgct tacgaagttc
      121 gctcgttgtc tttgaaatcg cgttgtcgct catactctta gttggagcag gactcctggt
      181 tcgcagtttc ctctcgctga tgaaaacgaa tcccgggttc actcccgatc atttgatgac
      241 aatgaccctg gtacttcctc gcgcgaagta caaggaggat gcgcagctca cttcattcta
      301 ttcggagcta atccagcgcg cggacacagt gccgggagtt caatctgccg cggttgtcaa
      361 tttcatacca cttggtgggt caaatgcgtc cgacgcattt ctggtggagg gtttaccgga
      421 accaccgccc ggtcaggagt acgaagggcg ttatcgcgtt tgcacacctg actactttca
      481 gacaatggga attgcagttc tgaggggccg cacgttcact gccgctgaca aagagggtgc
      541 tgcgccggtt gcgatcatca acgaaaccat ggcgcgtaaa tactgggcga atggagatgc
      601 ggtgggaaaa cgctttcggt ttttgggagc gctggaaaag agaccctgga tcgaaatcgt
      661 cggcatcgtt caagatgtta agcatgatct caacgttcct gtaacacccg attattatct
      721 gccctatgcg caggatgcct ggagcgggat ggtcctggtt gcacggacaa cagttgaccc
      781 cgcgagtacc gcgtctgctc ttcgtcaaca agtgtgggcc attgataaag atcaaccagt
      841 cttcgatgtg aagactatgg aagaactgcg ttcaatctcc gtcgcacttt actccttctc
      901 atcggtaatg ctcgcgattt ttgcaggcgt cgcgttgatc ctcgccgccg taggtatcta
      961 cggggtgatg gcgtttgccg tgacgcagcg gacccaggag attggtattc gcatggctct
     1021 cggtgcgaaa ggtacagacg ttttgaagct tgtgctccga cacggaatgt cgatggcgtt
     1081 gctcggaatt ggtatcggac tcgcaggtgc ctgggccttg accaggtttt tatcaaagtt
     1141 gcttgtaggt atttccacca cagatttatt gaccttcagc attgtgactt tcactttgtt
     1201 agtggcagct ttgttagctt gttacctgcc tgcgcgtcga gcgaccaaag tcgatccatt
     1261 ggtggcgctc cgttatgagt gagtggcaca gacttcagtg tgtgtcggtt gactctcagg
     1321 tgcttggaat tgaaaggaac acagactgaa gtctgtgcca cacagttatg gacaatcttc
     1381 taaaggacat ccgctacgga cttcgcagct tgatgaagcg acctgctttt acggctgttg
     1441 cggttatcac cctgggttta ggtatcggcg ttaacaccgc aatctttagc gtcatcaacg
     1501 cggtattgct caaacctttg ccttacgctg atccgtcgcg gctcgtcagc ttccggtcca
     1561 atcaatcagc ccttgacctg gctgacgttg aatcccaaac caaaactttc tcaagtcttg
     1621 gcggcatggt tgttcagcca cttgcttaca ccgccgggcg tgagcctctc caggttcaga
     1681 ttggtcaggt tacaggcggt ttcttttcga ccttaggagt tcagccacag cttggcaggt
     1741 tcatttcaaa cgaagacgac aagaatggcg cgccttatgt tgtcgtgctg ggccattcgc
     1801 tttggcagaa acagtttggg gctgatcctc aaatcctggg tcagtcaatt ccgctgagtg
     1861 ggaatatata cacggtcatt ggtgtgatgc ctgcgacatt tgcaactccc accattaaca
     1921 ccgaggcttg gactcccgtt cacgtttcta atcctctcgc agccaacttc cgcggagttc
     1981 attttctgcg cagttacggt cgcctcgctc ctggcgtcag cattgaacaa gcgcgagccg
     2041 aaatgcagct cattgatcac aatcttgcgg ctcaataccc agccgacaat aagaaccgca
     2101 ccacagtctt g
//
LOCUS       DATCGC010002034         1598 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_393645, whole genome shotgun sequence.
ACCESSION   DATCGC010002034 DATCGC010000000
VERSION     DATCGC010002034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1598
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_393645"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(77..766)
                     /locus_tag="VIJ87_19375"
     CDS             complement(77..766)
                     /locus_tag="VIJ87_19375"
                     /inference="COORDINATES: protein motif:HMM:NF012402.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446578.1"
                     /translation="MESQPLIITGVREQARDTRAFDLRPVTVTGHHGISFSPGQVAIL
                     KVNDEQGYFAFASAPDEAELEVLVKQKVGASKVIFDMHEGEMIELVGIAGHGFSLSEQ
                     KQRDLVFVAMGTGVAPLRSALRHVLRHKEDFGQLVVLYGARTPDDFCYRDEVDEWAEA
                     GVELRQVISRPEDHDWSGPTGYVQSLLDHVLPDLTSPVALVCGSLQMINETRERLTRM
                     GFASDDILTNY"
     gene            879..1532
                     /locus_tag="VIJ87_19380"
     CDS             879..1532
                     /locus_tag="VIJ87_19380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446579.1"
                     /translation="MKSIKLTFGIVFACLMILSGSLVTQAQSGRRQQRTEPAAPVPTP
                     TPEATPTPKTEKKEPDLILFVAADRSGSFTPYPYSFYDAAVIGCSDGLRKNASASVDF
                     STKELTRSDAIRKAKSDSKTYVIYLQLRSDSMAGTANQTADILLEFTVFAPSTAKVVT
                     SGTSYQNARRAGPVILGPPGGGSTSILYREQLLKRAGEDAAERILKSLHLNDPGRTN"
BASE COUNT          412 a          434 c          385 g          367 t
ORIGIN      
        1 ggaaatacta tcaagagtcg tacgtcggaa tttcagcatc cgccgtgtga ataacgtctg
       61 gaaatcttct ggccattcaa tagttagtaa ggatatcgtc cgaagcaaaa cccatccggg
      121 taagacgttc tcgagtttca ttaatcattt gaagcgagcc gcagactaac gcgactggtg
      181 aggtgagatc aggtaagacg tgatcgagga gcgactgaac gtagcccgtg ggacctgacc
      241 aatcatgatc ttctggtcgt gagataactt gtcgcagttc cactccggct tcggcccatt
      301 catccacctc gtctcgatag caaaagtcgt ccggtgtgcg cgcgccatag agaacgacaa
      361 gctggccaaa gtcttctttg tgcctcaaca cgtgacgcag tgcagatcgc aggggcgcca
      421 cacccgtacc cattgctacg aaaaccaggt cacgctgctt ctgttcggag agtgaaaaac
      481 catgacctgc gatacctaca agctcgatca tctcaccctc gtgcatgtcg aaaataacct
      541 tgctagcccc gaccttctgt tttacgagta cctctagttc agcttcatcg ggtgcactcg
      601 caaaggcaaa atagccttgc tcgtcgttga ccttcaggat tgcgacttgt ccaggagaga
      661 agctgattcc gtgatgtccg gtgactgtta caggtcgaag atcaaaagca cgtgtgtcgc
      721 gagcctgttc gcgaactcca gtgatgatga gtggctgcga ttccatcttt ttctaatcgc
      781 agtttagcaa atccgtcgtt tggatctcag atttgagatt tcagatctca gcagtagtgg
      841 tacaatccca ccgcctgctc cccaagcacc cagtcaaaat gaaaagcata aagctcactt
      901 ttgggatcgt ctttgcttgt ctgatgatct tgtccggctc cctcgtcacg caggcacagt
      961 caggacgtcg tcagcaacgc actgagccag ccgcgcctgt tccaactcct acaccggaag
     1021 caactccaac cccaaaaacc gagaagaagg aaccggatct aattctcttt gttgccgctg
     1081 atcgaagcgg gagtttcacg ccctatcctt atagcttcta cgatgctgcc gttattggtt
     1141 gctctgatgg actgagaaag aacgcttcag caagcgtgga cttctccacc aaagaactaa
     1201 cccgaagcga cgccatcagg aaagccaaaa gtgattcaaa gacttacgtc atctatctgc
     1261 aattgagaag cgactcgatg gcggggaccg caaaccaaac cgcagacatc ctactcgagt
     1321 ttacggtctt tgctcccagc acagccaagg tggttaccag cggaacctca tatcaaaacg
     1381 caagacgcgc cggaccggta atcctcgggc ctcctggtgg aggatcgaca agcatcttgt
     1441 atcgtgaaca actcctcaaa cgagcgggcg aagacgccgc cgaaagaatc ttgaaatccc
     1501 ttcacctcaa cgatccggga agaacaaatt aaagaattgg acttgggact ttggtctttg
     1561 gactttgtaa gtccaattga agacgccact gtggctcg
//
LOCUS       DATCGC010002035         1304 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_260785, whole genome shotgun sequence.
ACCESSION   DATCGC010002035 DATCGC010000000
VERSION     DATCGC010002035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1304)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1304)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1304
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_260785"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1265
                     /locus_tag="VIJ87_19385"
     CDS             <1..1265
                     /locus_tag="VIJ87_19385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446580.1"
                     /translation="GLSGFETGVAVMPLVQGDSDVGKDDLDSLHSTRTADTLSPRALQ
                     LLQGRIRNTRLMLRTAALIMSVLLIASSLVTTMLIQPKEFAEGGQANGRAISFLAHSF
                     FGDIFGTAYDLSTIMILWFAGASAMAGLLNIVPRYLPRYGMAPEWARATRPLVLVYVA
                     IAFTVTLIFRADVDAQGGAYATGVLVLMTSAAIAVTLAMYRKGKNWKVFLVISVVFAY
                     TTVQNIHERPEGIKIASFFILAIVIASLVSRVMRTTELRVDRLELDDLARDFIRAAGR
                     GTIRIIANRKDQGDVLEYQTKEVEKRADNHIPQGEPIIFFEVTPGDASEFSGTLRIHG
                     ENVDGFKILRTESPAVPNAIAAFLLYLRDETGKLPHVYFGWSEGNPLSYLLRYIAFGE
                     GDTAPVTHEVLRQAEKDPARRPIVHVGG"
BASE COUNT          305 a          305 c          371 g          323 t
ORIGIN      
        1 ttggtctatc tgggtttgag actggagttg cggtaatgcc tttggttcaa ggcgacagcg
       61 atgtgggaaa agacgatctg gatagtttgc attcgacgcg tactgccgac accctgagcc
      121 cgcgggcact acaactactg caagggcgca tcagaaacac gcgactcatg ttgcgaacag
      181 cggctctgat aatgagtgtg ctgcttattg cgagcagtct agtgacgacc atgctaatac
      241 agccgaaaga gtttgcggag ggtggtcagg ctaacggtag agcgatcagc tttctcgcgc
      301 actcgttttt tggcgacatc ttcggtacag cctatgacct cagcacaatc atgattctct
      361 ggtttgcagg tgcttcggcg atggcaggtt tgctaaatat cgtacccaga tatctgccac
      421 gttacggtat ggcgccggaa tgggcgagag caaccaggcc tttggtgctg gtgtatgtcg
      481 ctattgcttt cactgtcacc ttgatctttc gcgctgatgt ggatgcacaa ggcggagcgt
      541 acgccaccgg tgttttggtt ttaatgacgt ctgcggcgat cgcagtaaca ctggcaatgt
      601 atcgcaaggg gaagaactgg aaagtcttcc tggtgatttc agtggtgttt gcctatacca
      661 ctgttcagaa cattcacgaa cggcctgaag gcatcaagat cgcgtcgttc ttcatacttg
      721 cgattgtgat cgcatcgctt gtatcgcgag taatgcgcac aactgagttg cgagtagata
      781 ggttagagct tgacgatctc gcacgtgatt tcattcgggc cgcaggtcgg ggaacaattc
      841 ggattattgc gaaccgaaaa gatcagggcg acgtgctcga gtatcaaacg aaggaagtcg
      901 agaaacgcgc ggacaatcac atcccgcaag gcgagcccat tatctttttt gaagtgactc
      961 ccggtgatgc gtcagagttc tcagggacac tccggattca cggcgagaat gtggacggtt
     1021 tcaaaatact tagaactgag tcgcccgccg ttccgaatgc catcgcagca ttcttactgt
     1081 acctgcgcga cgagactgga aaattgccgc atgtatattt cggttggagc gaaggaaacc
     1141 cgctttcgta cttgttaagg tacatcgcct tcggtgaggg cgatacggcg ccagttacac
     1201 atgaagtgtt gcgtcaggca gaaaaggacc cagcccgtcg tccgatagtt cacgtcggag
     1261 gatgatcagt ccgctgaatt tacttcgtaa agagtaacga gatg
//
LOCUS       DATCGC010002036         1111 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_63369, whole genome shotgun sequence.
ACCESSION   DATCGC010002036 DATCGC010000000
VERSION     DATCGC010002036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1111)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1111)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1111
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63369"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
BASE COUNT          309 a          272 c          327 g          203 t
ORIGIN      
        1 agaggcgagc aaccgcacta ggaaaatcta gcagagtcgg tcagagaagc cagaaatcgt
       61 tcagttagtg agggagtaga ggtgagaccc gcggaaagga taggaaaggg cagaggtgac
      121 gacaggggag tgagtggaat ggcggagaaa atctacagcg ctattgacgc gaacaaactc
      181 gccgcgatca gtcccagcgt tcgcacgggg aacggtgtat cggaaactag taggcggatc
      241 catcaccaag aggcgacagc atcagcaaag gggagacggt gagaggtgcg cggcgaggga
      301 cgcgtgtttg cggcctgcca cgcgccgcga aaccgttcct gacaccgttt tattccctca
      361 accttgcaaa gacttgaccg cgatcgaagc tcctgctgac gcgccaatgg tattcatcag
      421 gacgtcagtc atcgaaggaa agcggacggg agaaaatact tggtaaagct cacaagtaac
      481 agacagcaat agccctgcaa gcgttgcctc gcaaatcaac ttcacgcgag gcgctcctcg
      541 caccctcgca tacgcaaagc ctaaaggaat gtagaggcaa cagtttgcaa tggtatcgcg
      601 aagcagccga tgtggcgatc gcagcacatc aaggagtggg atccatctca cacgccccca
      661 ctggggagct tcaatccacc aaggaaagct gcaaagaact attatgacga ggatccatcc
      721 aacgagaata aacgcccaca cgtagattgg ctgagacaca ttcagcgatg ggccgctctt
      781 agagagaaca ttgtctgaca taatggcggc cagtgtactg gaaagtcggg taggtttcta
      841 tcgatcagga atggtacggg cgatagatct ccagaaaacg agccggccag ccacgtgccg
      901 cgaaacggtt cctgacaccg gttcattcgg tcaatgtcaa tgggatttga gagaagccaa
      961 atcgatggag aagcggtact tcacatcgga cttgagcagt ctgtcgtagg cttcgttcac
     1021 tttctggatg gggatgactt cgacatctgc ggtgatgtta tgggtgccac aaaaatccaa
     1081 catctcctgg gtttcgggga gaccgccaat g
//
LOCUS       DATCGC010002037         2580 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_330854, whole genome shotgun sequence.
ACCESSION   DATCGC010002037 DATCGC010000000
VERSION     DATCGC010002037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2580
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_330854"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            165..>2580
                     /locus_tag="VIJ87_19390"
     CDS             165..>2580
                     /locus_tag="VIJ87_19390"
                     /inference="COORDINATES: protein motif:HMM:NF003617.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoketolase family protein"
                     /protein_id="HEY5446581.1"
                     /translation="MVPTISLTKDLSAYGVARSTIKGKPLNDEEARKIHAFWNACNYL
                     ALGMIYLLDNPLLREPLQPEHIKRRMLGHWGASPALSFIYTHLNRVIKSRDLNMLYMA
                     GPGHGAPGVLGPLYLEGSYSEVYPEKSQDEEGLRRFFKEFSFPGGIGSHCTPETPGSI
                     HEGGELGYVLSHACGAAFDNPDLIVAAVVGDGEAETGPLATSWHINKFLNPIRDGAVL
                     PILNLNGYKINNPTLLARITHQELEDLFKGYGYTPLFVEGSEAQSMHQAMAASLDHAL
                     QTIRTFQQEARSSRKATRPRWPMIVLRSPKGWTAPAEVDGNKVEGFWRSHQVPLAGVR
                     SNPNHLRLLELWMRSYKPETLFDANGSLVDELRELTPTGDRRMGANPHANGGQLKKSL
                     RLPDFRDYAANFKHPAQLEAENTKPLGQFLRDVMKLNMDSFRVFGPDENTSNKLDAIY
                     EVSKKLWLAEYFPEDDDGGELSTDGRVIEMLSEHTLEGMLEGYLLTGRHGFLSTYEAF
                     AHVIDSMFNQHAKWLSICSELPWRRNIASLNLLITSTVWRQDHNGFTHQDPGFLDVVV
                     NKRAKVTRIYLPPDVNSLLSVANHCLRSENYINVIVSDKQMHLQYLDIDTAITHCTKG
                     ISIWAQASNDQGQEPDVVMACAGDIPTQEALAATALLRAEFPELKIRFINVVDLFKIQ
                     SDREHPHGLSDSDFDSLFTIDKPIIFNFHGYPWLIHKLTYNRTNHKNMHVRGYKERGN
                     INTPMELAIDNEIDRYTLAIDVIDRVPGLQSIGAHAKEKFRNEQISCCRYAHEFGVDR
                     PDILEWR"
BASE COUNT          652 a          654 c          660 g          614 t
ORIGIN      
        1 attctcgcca gtttgcgggt gcctaaaagc taatttccca tcgcctgtca tttctaacag
       61 tattcatttc cccgccgaaa attagaattc ttgacgccct gaccgtctga aacgattgga
      121 gcggccctgc gttcgatcac cgcccggact ggagagaact aattatggtg ccaacgatat
      181 cgctgactaa ggatttaagt gcctacggag ttgcccggtc aactataaaa ggtaagccac
      241 taaatgatga agaagcgcgt aagattcacg ccttttggaa tgcttgtaat tacctcgccc
      301 tggggatgat ttatctgctg gataacccgc tacttcgtga accgctccag ccggaacata
      361 tcaaaaggag gatgctcgga cactggggag ccagtccggc cttgtccttt atatatacgc
      421 atctcaatcg cgtcatcaaa tcgcgagacc tcaatatgct ttacatggcc ggtccgggac
      481 acggagcccc tggtgtttta ggaccccttt atctcgaggg ctcgtattcg gaggtttatc
      541 cggaaaagag tcaggacgaa gaaggtttgc gtcgcttctt taaggagttt tcctttccgg
      601 gaggaatcgg cagtcactgc acaccggaaa ctccgggttc gatacatgag ggtggtgaac
      661 ttggctacgt cttgtcacac gcctgcgggg ctgctttcga caatcctgat ttgatagttg
      721 ccgccgtggt tggagacggg gaggcggaga ccggaccgct tgcaacatcg tggcatatca
      781 ataagtttct taatccgatt cgcgacggcg cggttctccc aatcctgaac ctgaatggtt
      841 acaagatcaa caatccaacg ttgcttgcgc gaataactca tcaggagttg gaggacctgt
      901 tcaagggcta tggctacaca cctctcttcg tcgaaggctc cgaagctcag tcgatgcatc
      961 aagcaatggc cgcgtcctta gatcatgctt tgcagacgat tcgaacgttt caacaagaag
     1021 ctcgaagttc tcgcaaagcg acgagaccac gttggccaat gattgtgctt cgctcaccga
     1081 agggttggac tgctcctgcc gaagttgacg gcaataaagt tgaaggcttt tggcgctcgc
     1141 atcaagtgcc gcttgccgga gtacgaagta atccaaacca tctacgactt ctcgagctgt
     1201 ggatgcgcag ctacaaaccc gaaactctgt ttgacgctaa cggcagtctt gtcgacgagc
     1261 tcagagaatt aaccccaaca ggagatcggc gcatgggcgc gaatccgcac gccaacggcg
     1321 gtcaactcaa aaagagtctt cggttacctg atttcaggga ttatgcggcg aacttcaaac
     1381 atccggccca gctcgaggca gaaaacacaa agcctctcgg acagttcctg cgcgacgtta
     1441 tgaagttgaa catggattcg ttcagggtct ttggtccaga cgaaaacact tcgaacaagc
     1501 ttgatgcgat ctacgaggtc agtaaaaaac tatggttagc cgagtacttt cctgaagacg
     1561 atgacggcgg agaattgtcc accgatggac gtgtgatcga aatgcttagt gagcacacgc
     1621 ttgagggaat gctcgaggga tatctcttaa caggacgaca tggttttctt tccacttacg
     1681 aagccttcgc ccatgttatc gactcgatgt tcaaccagca tgccaagtgg ttgtcgattt
     1741 gtagcgaact tccgtggcgg cgcaacattg cttcgctgaa cctgctgatc acctcaaccg
     1801 tgtggcgcca ggaccacaat ggattcacgc atcaggatcc gggctttctt gatgtcgttg
     1861 taaacaagcg cgcaaaggtg acacggatct atctgcctcc ggatgtcaat agcttactgt
     1921 cggtggctaa tcactgtttg cgcagcgaga actatatcaa cgtgatcgtg agcgacaagc
     1981 agatgcactt gcagtatctg gatattgata ccgcgatcac acattgcact aaaggcatca
     2041 gcatctgggc ccaggcaagt aatgatcaag gccaggaacc tgatgtggtg atggcctgcg
     2101 ccggagatat ccccacgcag gaagccttgg cggcaacggc gttgcttcgt gcggagtttc
     2161 ctgagctgaa gattcgcttt atcaatgtag ttgacctgtt caagattcaa tctgatcggg
     2221 agcatccaca tggtctgagt gatagcgact tcgacagtct ctttaccatc gataagccga
     2281 tcattttcaa tttccatggt tacccctggt tgatacacaa gctcacctac aaccgaacca
     2341 atcacaagaa tatgcacgtc cgtgggtaca aagagcgagg caacatcaat acgccgatgg
     2401 aattggcgat cgacaacgaa atcgatcgtt acacactggc tatcgacgtc atcgatcgag
     2461 tacctggact tcaatcaatt ggagcacacg cgaaagaaaa gtttcgcaac gaacagatca
     2521 gctgttgtcg ttacgcacat gagttcgggg tcgacagacc agacatactt gagtggcgct
//
LOCUS       DATCGC010002038         1023 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_129107, whole genome shotgun sequence.
ACCESSION   DATCGC010002038 DATCGC010000000
VERSION     DATCGC010002038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1023
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129107"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..259
                     /locus_tag="VIJ87_19395"
     CDS             <1..259
                     /locus_tag="VIJ87_19395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446582.1"
                     /translation="QDLQIEVTKKGLGKEVSLKHGPKEWFMLVEVTPENTVVIRQEKE
                     NETYLVDESETHDRPLTSPEVDTIIDDFINSVKTQTKAKRK"
     gene            368..787
                     /locus_tag="VIJ87_19400"
     CDS             368..787
                     /locus_tag="VIJ87_19400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446583.1"
                     /translation="MKSSPRFVIFAHNATYDKLHQVATIGLTAAAMGKEVIVVLLFWT
                     IKKLAQGHIDAIDFPPEYAQSAEEVARLLREKKVPKISEMFQEAKQVGQFRLVACSAG
                     LEYMGVDSDAVAKNVDEVMGLPAILSLTAGAETTLFI"
BASE COUNT          267 a          254 c          267 g          235 t
ORIGIN      
        1 acaagacctt cagattgaag tcacgaaaaa aggactgggc aaagaagtgt cgcttaagca
       61 cggcccgaag gaatggttca tgcttgtcga agtcacacct gaaaataccg tggtgattcg
      121 tcaggaaaaa gagaatgaga cgtacctggt ggatgaaagc gagacgcacg atcgaccgtt
      181 gacgtcgccc gaagtcgata cgatcatcga cgactttatc aatagcgtca aaacccaaac
      241 gaaagccaaa cgtaaataat ttgctcatcg gcctacgcga ccgacagcgc atcgccagat
      301 ttgctctacg cattcttgtt actcttcagt cccgaggcta taatctcttg gccatgagga
      361 aatcatcgtg aaatcgagtc cgcgatttgt catctttgcc cacaacgcga cctacgacaa
      421 actgcaccaa gtggccacga tcggcctgac ggcggcagcc atgggcaaag aggtcattgt
      481 cgtcctgcta ttttggacga tcaaaaaact tgctcaagga cacatcgacg ccatcgattt
      541 ccccccggag tacgctcaaa gcgccgaaga agtggctcgt ttactacgag agaaaaaggt
      601 gccgaagatt tcggagatgt ttcaggaagc caagcaggtg ggacagtttc gattagtggc
      661 ctgcagcgcc ggactcgaat atatgggcgt cgattctgat gccgtggcga agaacgtcga
      721 tgaagtcatg ggactccccg ccattctttc actcactgca ggcgcagaaa cgacgttgtt
      781 catctgacgt cagtcgttac tgcttaattc cggctcccct tctaggtcac gattcaggct
      841 ttatctcgac cgcgggacat caactcgatc gcaatatttt gtcagcttac agcgactgca
      901 gtacggagag accggttggc agatattttg gccgaaggga acgagaagat cgttataggt
      961 tatccagtat ttcgggggaa gtttctgata cagggcttgt tccgtttcgt cgggcgtctt
     1021 ggt
//
LOCUS       DATCGC010002039         1066 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_63462, whole genome shotgun sequence.
ACCESSION   DATCGC010002039 DATCGC010000000
VERSION     DATCGC010002039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1066)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1066)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1066
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63462"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1066)
                     /locus_tag="VIJ87_19405"
     CDS             complement(<1..>1066)
                     /locus_tag="VIJ87_19405"
                     /inference="COORDINATES: protein motif:HMM:NF015052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF3536 domain-containing protein"
                     /protein_id="HEY5446584.1"
                     /translation="WNERIHSECYGPNAFAHIGSDTAVVNNYRNISFNFGPTLLSWLA
                     KHQRRTYDRILTADRESAAIHSGHGNAIAQAYGHAILPLCNQKDRLTQIRWGIEDFRF
                     RFRRDPESLWLSETACNDETMSLLIEHDLRYVILAPEQAGRIRKRSDEPWITINPGAI
                     NTTQAYRYSHKDGSGRSIAVFFYHGGLARSIAFQRALTSSRGLVDRFIQVAQGGAQLV
                     NVATDGETYGHHFKFGDLCLAHAVEIEAKEAGFWITNYGEYLDHHPPEFEVELSLGPL
                     NEGSSWSCAHGVGRWIRDCGCHTGGEAGWNQQWREPLRLALNFLRDDAAKHFEDEGFG
                     LFRDSWQARNDYIKVLLDENE"
BASE COUNT          265 a          293 c          255 g          253 t
ORIGIN      
        1 ctcattctcg tccagcaaca ctttgatgta gtcgttacgc gcttgccatg aatcgcggaa
       61 tagaccaaag ccttcgtctt cgaagtgctt agcggcatca tcacgaagaa agttcagtgc
      121 cagacgaagt ggctcacgcc attgttgatt ccaacctgcc tcaccacccg tgtgacaacc
      181 acaatcgcga atccatcttc caacaccgtg agcacaactc catgaagaac cttcattcaa
      241 aggaccaaga ctgagttcga cctcaaactc cggcgggtga tggtcgagat actcgccata
      301 gttcgtaatc caaaagccgg cttcctttgc ttcaatctct accgcatggg ccaaacacag
      361 atccccaaac ttgaagtgat gtccataagt ctcaccgtca gtcgcaacgt ttaccaactg
      421 cgcgccgcct tgtgcgacct gaatgaagcg atcgaccaat ccacgactcg aagttaaggc
      481 acgttgaaag gcaatagatc tcgccaatcc tccatgatag aaaaacaccg cgattgaacg
      541 ccccgagccg tctttgtgtg aataacggta agcttgagtc gtgttgatag ctcccggatt
      601 aatggtaatc caaggttcgt cgctgcgctt tcggatacgc cccgcttgtt cgggcgcaag
      661 gatgacgtaa cgcagatcat gctcaatcag caacgacatc gtttcgtcgt tgcatgcggt
      721 ttctgacagc caaagcgact cgggatccct tctaaagcgg aatctaaaat cctcaatacc
      781 ccagcgaatc tgggtcaggc gatctttctg gttacagagt ggaaggattg cgtggccgta
      841 tgcctgtgcg atggcgtttc catgtccact atgaatcgct gcactctcac ggtctgccgt
      901 aagaatgcga tcgtaagttc gacgctgatg tttggctaac cacgaaagca gcgtcggtcc
      961 aaagttaaag ctgatgttgc gatagttgtt aacgacagcc gtgtcgcttc ctatgtgcgc
     1021 gaaagcgttg ggaccgtagc attcgctatg aatgcgctcg ttccag
//
LOCUS       DATCGC010002040         1296 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_229647, whole genome shotgun sequence.
ACCESSION   DATCGC010002040 DATCGC010000000
VERSION     DATCGC010002040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1296
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_229647"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..542
                     /gene="lpxI"
                     /locus_tag="VIJ87_19410"
     CDS             <1..542
                     /gene="lpxI"
                     /locus_tag="VIJ87_19410"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: protein motif:HMM:NF017989.4"
                     /note="LpxI, functionally equivalent to LpxH, replaces it
                     in LPS biosynthesis in a minority of bacteria; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase LpxI"
                     /protein_id="HEY5446585.1"
                     /translation="PDARMLKVLLKLPRRNTDSLIGAIANELQSEGIELVDSTYFLQD
                     QLPKPGVLTRRKPDKREQEDIDYALEIARQIAQLDLGQTIIVRSKACVAIEAMEGTDE
                     TIRRAGNLVKRHLTVVKLAKPNQDMRFDVPVVGVPTLKTMTEAGATCLCITAGKTLMF
                     DRDEMIRLANETKIAIVAV"
     gene            complement(733..1161)
                     /locus_tag="VIJ87_19415"
     CDS             complement(733..1161)
                     /locus_tag="VIJ87_19415"
                     /inference="COORDINATES: protein motif:HMM:NF024806.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5446586.1"
                     /translation="MSDELRVSIIARRGIEQMKEGVYAEAQQQFEAALKLDRSNSWVY
                     YNLGLLFLEQRNWQQALDNFDASLLGTLKPSWIEVWAHIKRGNAYDAKGDRNKAVYEY
                     QKAVQSGIDYDNAQAIAKKYLATPYDPKASQTAEALPPEN"
BASE COUNT          313 a          316 c          323 g          344 t
ORIGIN      
        1 ttcctgatgc gcgaatgctg aaagtgctat tgaaactacc gcgtcgcaac actgactctt
       61 tgataggtgc gatcgccaac gagcttcaga gcgaagggat cgaactggtt gattcgacgt
      121 atttccttca ggatcaattg ccgaagccag gagtgttaac tcgccggaag cccgacaaac
      181 gcgaacagga agacatcgac tatgccctcg aaatcgcccg acagattgct caactcgatc
      241 ttggtcaaac cattatcgtt cgcagcaagg cttgcgtagc aatcgaagca atggaaggca
      301 cggacgaaac cattcgacgt gcgggcaacc tggtaaaacg acatctcacg gttgtgaaac
      361 ttgccaaacc aaatcaagat atgcgcttcg atgtacccgt tgttggcgtt cctacattga
      421 aaaccatgac cgaagccggc gccacctgtt tgtgcattac tgcggggaag acgttgatgt
      481 ttgatcgtga tgagatgatt cgactggcca atgaaacaaa gattgcgata gtagccgtgt
      541 agcgatgtcc gatattgctt tagcttgtcg tgtcggaaag agtttagccg cagattcacg
      601 cagaaaaacg cagatcagaa ttaaagaacg taggagatca cttttcctaa aagccttttc
      661 tgatctgcgt ttttctgcgt aactctgcgg ctgatttttt ttgtcaacga caagctaaag
      721 catatcggac aatcaatttt ctgggggcag tgcttcggca gtttgcgacg cctttggatc
      781 gtatggtgtc gctagatact tcttcgcgat agcctgggca ttgtcgtaat caatccccga
      841 ctgcacggcc ttctgatact catatacggc tttgttccta tcgccttttg cgtcgtaggc
      901 gttaccgcgt ttgatgtgcg cccaaacttc gatccacgat ggcttcaggg ttccgagtaa
      961 tgaagcgtcg aagttgtcga gtgcttgttg ccagtttcgt tgctcgagaa acaggagacc
     1021 gaggttgtag taaacccagg agtttgatcg atcgagtttt agtgccgctt caaactgctg
     1081 ctgggcctcg gcgtaaacac cttccttcat ctgttcgatg ccacgtcgcg caatgatcga
     1141 tactcgcagt tcatccgaca tacgcaggat cttgttgttt ggatcgacta caacttcgat
     1201 cggctgtccg ttggattcga aatcgaaatc ttcgcttcgt cactcaacgc gcacgatggt
     1261 ttgttgattg tcgccttcag cacgcaacaa caattc
//
LOCUS       DATCGC010002041         1231 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_129140, whole genome shotgun sequence.
ACCESSION   DATCGC010002041 DATCGC010000000
VERSION     DATCGC010002041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1231)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1231)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1231
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129140"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1231)
                     /locus_tag="VIJ87_19420"
     CDS             complement(<1..>1231)
                     /locus_tag="VIJ87_19420"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEY5446587.1"
                     /translation="QDDLGLTAVDWAENHIAIAELIKSATKPVEAVAQPPAPIQEVSP
                     PVVKSILQPAETPVRLQTEEPALKGLAGAILRDHKTRVGDPQPINSTPAPQSNLEPEF
                     SSADDTLDKPLSQVDDTAASARPVASRSRIFDLDSTNDFPRPVSKVEVTVPSFDTHNS
                     TRRTFLWVLLLIAFAAVGFGTYRFGRSVFSTPITNNESPSSTPTPRTQSPPPDIKKLP
                     IVSGDLAGAELHLADAEYPADQAKGQSGTVNVQVQVSQKGIVFAAKAIDGDEVFRAAA
                     EKAAKSSAFAPYKLVDKSSVIEGTITYTFVPGQQSGSKSVAEHGVTVSAGGPLAGTEL
                     KLVKPDYSSDANQENAARKMTVVVRVTSSGRVVSWRFLDGDQRLHGAVLNAVRRSTFD
                     PAKLSGNGDVVGTITYT"
BASE COUNT          277 a          309 c          335 g          310 t
ORIGIN      
        1 aacgtgtaag tgattgtgcc gacaacgtcg ccatttccac taagtttcgc gggatcaaaa
       61 gttgatcggc ggacagcgtt aagcactgca ccatgaagac gctggtcccc atcaagaaat
      121 ctccaggaca ctacacggcc ggaactagtg acgcgcacta ctaccgtcat tttcctggct
      181 gcgttttcct gatttgcatc ggaagaataa tcaggtttga ccagcttgag ttccgtaccc
      241 gctagtggtc caccggcgct aaccgtgact ccgtgttcgg caactgactt ggagcctgac
      301 tgttgacctg gtacgaatgt ataagtaatt gtgccttcga tcaccgaaga cttatcgaca
      361 agtttatagg gagcaaacgc tgagctcttt gcggctttct cagcggcagc tcgaaagacc
      421 tcatctccat cgatcgcttt cgccgcaaag acaattcctt tttgacttac ttgcacttgc
      481 acattcacgg tgccgctctg acccttcgcc tgatcagccg gatattctgc gtctgcaaga
      541 tgtagttccg cgcctgccag gtcaccgctc acaataggca gcttcttaat gtccggcggt
      601 ggggattgag ttcgaggtgt tggggttgaa gatggcgact cgttatttgt aatcggcgtt
      661 gaaaacactg acctcccgaa tctataggtg ccgaaaccca cggccgcaaa ggcaatgagc
      721 aatagaaccc aaaggaacgt ccgacgcgtg gagttgtgcg tatcaaatga tggaacggtg
      781 acttcgactt tgcttaccgg tctcggaaag tcattggtgg aatccaggtc gaaaatacgc
      841 gaacgcgaag cgaccggcct tgctgaagcg gcagtgtcgt caacttggga aagcggcttg
      901 tcgagagtgt catctgccga cgagaactcc ggttccagat ttgactgtgg agctggagtt
      961 gaattgattg gctgagggtc gccaacccgt gttttgtgat cgcgcagtat tgctccagcc
     1021 aatcctttca atgctggttc ttccgtctga agtcgaaccg gcgtttcagc tggctggaga
     1081 atggatttaa caactggtgg tgaaacttct tgaattggag ctggcggctg cgctacggct
     1141 tcgacaggtt tggtagctga cttaattagc tcggcgatcg caatgtggtt ctcggcccag
     1201 tcaacagcgg ttagaccaag atcgtcttgg a
//
LOCUS       DATCGC010002042         1839 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_494465, whole genome shotgun sequence.
ACCESSION   DATCGC010002042 DATCGC010000000
VERSION     DATCGC010002042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1839)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1839)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1839
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_494465"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..910
                     /locus_tag="VIJ87_19425"
     CDS             <1..910
                     /locus_tag="VIJ87_19425"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEY5446588.1"
                     /translation="SERFPMEPEDGGSPWILQTTLQLPFKNALFKTYPIVVQYWKGVE
                     WDELKEGENLLMQSKAAFAKGTVQIEGKKTLVQYGFNAQSKKISVNNGWLGVDGDGDS
                     YIDLDRFSPEAAEARDETVVFRVGSRYVSTKKVDLEKNEVTMREHAASDYKRVELTIG
                     AELPDFQFSDFHLKKRKFSEFRGKYVLIDFWAMWCGPCRRELPYHKLAYSRFQDRGFE
                     ILGMNNDPDYTLVIPTLNRNGLTWPQATMNSIAELETRYRIHYFPTTLLVGPDGKIIS
                     LGQTRKKQPGLRGVDLIKSLDALLPP"
     gene            complement(1000..1578)
                     /locus_tag="VIJ87_19430"
     CDS             complement(1000..1578)
                     /locus_tag="VIJ87_19430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446589.1"
                     /translation="MSLAQFAEEPDQEQRIAKLREEIKKLGGNTMSIEDMPADMEEEF
                     LRHVLEYETAEPISLFRLLENSGLKLLVPGSLTDDDLTPKLKETIERMSSLGAYLLHT
                     NHLSDRELYEYLYNDGLREEAVLFPENPSYAYMIDLTGSGSEEDNQIYLKYYADAEHR
                     IQWALDWPDDIIPDHEDPPFDRDRHLPQSPIG"
BASE COUNT          464 a          431 c          474 g          470 t
ORIGIN      
        1 gtcggaaaga tttccgatgg aacctgaaga cggcggcagt ccctggattc ttcaaactac
       61 tttgcagctt ccttttaaga acgctttgtt caagacctat ccgatcgttg ttcagtactg
      121 gaaaggtgtg gagtgggatg aattgaaaga aggcgaaaac ctcttaatgc aatcgaaggc
      181 ggctttcgca aaaggcaccg tacagatcga aggcaagaaa accctcgtgc agtacggatt
      241 caacgctcag tccaagaaga taagcgttaa taacggctgg ctaggcgttg atggagatgg
      301 cgacagctat atcgatcttg atcgtttttc acctgaagca gcggaggcga gagatgaaac
      361 ggttgtgttt cgagtaggca gtcgctatgt ctcgacgaag aaagtcgatc tcgaaaagaa
      421 cgaggtcacg atgcgtgagc atgcggcgtc ggactacaag cgggtcgaac taacgattgg
      481 agcggagcta cctgactttc agttttctga ttttcacctc aagaagcgga agttttccga
      541 gtttcgagga aagtatgtat tgattgattt ttgggcgatg tggtgcggac catgtcgacg
      601 cgagttgccg tatcacaagc ttgcgtattc acgctttcag gaccggggtt ttgagatcct
      661 gggcatgaat aatgatccgg attacacgtt agtgatccct acgctcaacc ggaacggatt
      721 gacatggcca caagcaacta tgaacagcat cgcggagctt gagactcgct accggattca
      781 ctattttccg acgaccctac tggtcggtcc cgacggcaag ataatctccc taggtcaaac
      841 acggaaaaag caaccaggcc tccgtggagt ggatctgatc aaatcactcg acgcactcct
      901 gccgccgtaa agatcatgtg gcacagactt cagtctgtga tctttaacta ccggctcgct
      961 acagctgaca gtacacagac tgaagcctgt tccacttcat caaccgatcg gtgattgcgg
     1021 caaatgcctg tcgcgatcaa acggcggatc ttcgtgatca ggaataatgt cgtcaggcca
     1081 atccaacgcc cattgaatcc ggtgttcggc gtcggcgtaa tacttcaagt agatctgatt
     1141 gtcttcctca ctcccgcttc cggttaaatc aatcatgtac gcgtagctcg gattctctgg
     1201 aaacagtaca gcttcttcac gcagaccgtc gttgtaaaga tactcataaa gctccctgtc
     1261 gctcaggtga ttggtgtgca aaagatacgc tccgagtgag gacattcgtt cgattgtttc
     1321 tttcaacttt ggtgtcagat cgtcgtccgt cagactacct ggcacaagca atttgagccc
     1381 tgagttctcc aacaagcgga acagactaat cggctcagca gtctcatact ccagaacgtg
     1441 ccgcagaaac tcctcttcca tgtcagccgg catgtcttca atcgacatgg tgttgccgcc
     1501 aagttttttg atctcttcgc ggagtttggc gattcgttgt tcctggtccg gttcttcggc
     1561 gaattgtgcg agtgacattt tcaggctcct taagaatttg agaggtttaa ggtttgaggt
     1621 gcccgcggag ttaacgtgag gaacctccgt gcgatcgagg tgccttcatg gtgagatgaa
     1681 agcactaaaa aaacgtagcc gcattgtgag ccacagattt tcgaatgtaa aggatttgaa
     1741 gcttagtatt ttgtacttgg tgctttgtac tttgagcctc ttactttaat gcaacggaaa
     1801 aacacgaggg gctaagctcg gagtacaaag cactaggta
//
LOCUS       DATCGC010002043         1064 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_393760, whole genome shotgun sequence.
ACCESSION   DATCGC010002043 DATCGC010000000
VERSION     DATCGC010002043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1064)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1064)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1064
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_393760"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1064
                     /locus_tag="VIJ87_19435"
     CDS             <1..>1064
                     /locus_tag="VIJ87_19435"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY5446590.1"
                     /translation="TVSPQQRDAGLSFITITGFSPLGDEGNNPQNSVTNVYQVLDNAS
                     YVHGNHVIKFGADLRFSQQNAFRDVESRGRLQFSPFGQITGNALGDLLLGFPLLTSVA
                     RVDNPQHIRTQSYNFFINDSFRIKRNLTITAGLRYEYNTPAVDAQDRANLYNVATGTL
                     VQVGTNGMPRSGYDPDKNNFAPRVGFAWTVGKDQKTVLRGGYGVYYDQAPFAPAEALY
                     FNSPYFDNNIFFSLPGLPLTLNNPFPSFFPFPLPDSALALQRDLRTGYMQHWNLNVER
                     QIGEKGVLEVAYVGSKGTKLLTARDINQPQPSALPPGLPFVPRPNPRFDDINLLESRA
                     NSNYHALQARFQQRLSKGFS"
BASE COUNT          264 a          296 c          257 g          247 t
ORIGIN      
        1 cactgtttct cctcaacagc gagatgcggg tctcagtttt attaccatca ccgggttttc
       61 gccgcttggc gacgaaggaa acaatccgca gaacagcgtc acaaatgtct accaggtcct
      121 ggacaatgca agttatgttc acggaaacca cgtaatcaag tttggagcag acctgcgctt
      181 ttcacagcag aacgcatttc gcgatgtcga gtcgcgcggt cgtttgcagt tctcgccatt
      241 cggacagatc actggaaacg cgcttggaga tttactgttg ggctttccac tgttaacgag
      301 cgtagcaagg gtggacaacc cgcagcacat ccgaacgcaa agttataatt tcttcatcaa
      361 cgacagcttc cggatcaaac gcaacctcac tatcacagct gggcttcgtt acgaatacaa
      421 cactccagca gtcgacgccc aggatcgtgc aaacctttac aacgtcgcaa ctggaacact
      481 cgtccaggtg ggaacgaatg gaatgccgcg cagcggctat gacccggata aaaacaactt
      541 tgcaccgcgg gtgggttttg cgtggaccgt cggaaaagat cagaagactg ttctccgcgg
      601 tggctatggc gtctattacg accaggcgcc tttcgcgccg gcagaagccc tgtacttcaa
      661 ttcgccgtac ttcgataaca acatcttctt ttcgctgccg ggtctacctc taacgctgaa
      721 caatccattt ccaagcttct tcccttttcc actgcctgac tcagcgctcg cactgcaaag
      781 ggatctgcga actgggtata tgcagcactg gaacttgaat gtcgaacggc agattggtga
      841 gaagggtgtg ctggaagtcg cgtatgtcgg ttcgaagggt acgaagcttt tgaccgcccg
      901 cgacatcaac cagccacaac caagcgcgtt accaccagga ctaccatttg ttccgcgacc
      961 caatccgaga tttgatgaca ttaacttgct tgagtcgcgc gcgaattcaa actaccacgc
     1021 attacaagct cgttttcagc aacgactcag taaaggcttt tcag
//
LOCUS       DATCGC010002044         1136 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_63531, whole genome shotgun sequence.
ACCESSION   DATCGC010002044 DATCGC010000000
VERSION     DATCGC010002044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1136)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1136
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63531"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..582
                     /locus_tag="VIJ87_19440"
     CDS             <1..582
                     /locus_tag="VIJ87_19440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446591.1"
                     /translation="DRSGRNDLWRMDIDGRNPRQLTNTDGVGGRFLLSPTDSSVFYPL
                     LANKISTVWKVSIEGGPSEQVTRVNSSRPLVTEDGQNLICEYGEAGANSTPRIALISM
                     DGKVSQLYDLPNVLKAGVLQWNHEGRALIYRESRNRVDNLWSQKLDGGAPLQLTDFKT
                     DQIFWFRFNRTGKDLALARGRDGSDVVMFTSFR"
     gene            678..1058
                     /locus_tag="VIJ87_19445"
     CDS             678..1058
                     /locus_tag="VIJ87_19445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446592.1"
                     /translation="MPQASKKAGLSGPSGCIGPLCDWGFGKSGLGCVDGSGGCEIAMF
                     LEAEASSFHPEELEEATKKINRILKKIPPDSKGRKLSFCSTNMGTFLAWVFHEGKPLG
                     GKAVTRRDDDKKVAKALKLKKKKY"
BASE COUNT          300 a          250 c          318 g          268 t
ORIGIN      
        1 gatcgaagtg gacgcaacga cctttggcgg atggatatag acggtcgaaa tcctcgacaa
       61 ctaactaaca ctgatggcgt tggcggacgc tttttgttgt caccgacgga ctcctcagtt
      121 ttttacccac ttctcgcaaa caaaatttca actgtctgga aggtttcgat cgaaggcggg
      181 ccttcagagc aggttactcg agttaattca tctagacctt tggtgacaga agatggccag
      241 aatctgattt gcgagtatgg agaggctggc gcaaactcaa cacccaggat cgcgttgatc
      301 tcgatggatg gcaaggtcag tcagttatac gatctgccaa acgttttgaa ggcaggcgtg
      361 ctgcaatgga accacgaagg aagggcgctg atttatcgtg agagccgcaa ccgagtagat
      421 aatctttgga gtcaaaagct ggacggtggc gcgcctcttc agttgacgga cttcaagacc
      481 gaccaaattt tctggtttcg tttcaaccga accggcaaag atctcgccct ggcgcgcggg
      541 cgggatggat cagatgttgt aatgtttacg agcttcagat aagtaagcag acctcattct
      601 cagttttacc tcaaggggaa aattcggcac atcaggcatg aagttagccc aggtgccttc
      661 aaacaaaagg aggctatatg ccgcaagcta gtaagaaggc tggtttaagt ggcccatcag
      721 gttgcattgg accgctatgt gattggggat tcggaaaaag cggattaggt tgtgttgatg
      781 gcagtggtgg ttgcgagatc gcaatgtttt tagaggccga ggcgtcgagc tttcatcctg
      841 aggagctcga ggaagcaacg aagaaaataa atcgcatctt gaagaaaatt cctcccgatt
      901 caaaaggacg aaaactctcg ttctgcagta cgaacatggg gacatttctt gcgtgggtct
      961 ttcacgaagg gaagccgctt ggcggcaagg cagttacccg tcgtgatgac gacaagaagg
     1021 tagcgaaagc attgaagttg aaaaagaaga agtactgata ccctttagta acaccaatcg
     1081 aactatgggt cgtgctcttc tgggaccgca ggcgtccgcg cctgccgtcg ttccac
//
LOCUS       DATCGC010002045         1683 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_393792, whole genome shotgun sequence.
ACCESSION   DATCGC010002045 DATCGC010000000
VERSION     DATCGC010002045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1683)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1683)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1683
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_393792"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1517
                     /locus_tag="VIJ87_19450"
     CDS             <1..1517
                     /locus_tag="VIJ87_19450"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY5446593.1"
                     /translation="KYLTTSVAQWVSHDLRRTLYNHIQKLSLSFHDNKRTGDLISRIT
                     SDIDTIQDFISQVLLGFIVNALTLIGMLVVMFYLDWSFTLIALTVAPLLFVVVYSFTW
                     RIKKASRDVRKKEGEIASIASEVLSSIHVVKAFTREDYEQQRFEKQSLETVESALAAR
                     SLKAKLTPLVEIIVAAGTCLVLWYGVRLALAGTITPGSLLVFLLYLGKMYKPMRDLSK
                     MTDTISKTQVGYERIREIVDTDREVRNLPGARPAPKLKGEIEFRHVDFKYVDRPLTLK
                     DVNFKLKPGQLGALVGPTGAGKTTIASLIARFYEPTGGQVIIDGKDIRSYRIKSLRQQ
                     ISFVLQESLLFQATIWQNIAYGRPEASRHEIIEAAKLANADEFIAQLPEGYDTMVGER
                     GVTLSGGQRQRIAIARAIVRNSPILILDEPTSGLDAASEELVFDALQRLMAGKTSIVI
                     AHRLATIQNADVIFVIDGGTIVQHGTHEELIKSDGLYAHLYQTQFRDQEVEMLS"
BASE COUNT          435 a          424 c          416 g          408 t
ORIGIN      
        1 agaaatacct gacaacatcg gtggcccaat gggtttctca cgacctgcgt cgcactcttt
       61 acaaccatat tcaaaagctg tcgctctcgt tccatgacaa taagcgcact ggtgatctga
      121 tcagccgaat cacgagcgat atcgacacaa ttcaagactt catctcccag gtgttgttgg
      181 gttttatcgt aaatgctctg actctgatcg gaatgctcgt agtaatgttt tatctggact
      241 ggagctttac gttgatcgcg ttaacagttg ctcctctttt attcgtcgtc gtctacagtt
      301 tcacctggcg catcaagaaa gcttcacgcg acgtgagaaa gaaagaagga gagattgctt
      361 caatcgccag cgaagtactc tcctctattc atgtcgtcaa ggcgtttacg cgagaggact
      421 acgaacagca acgattcgaa aaacaaagtt tagaaacagt cgaaagtgca ctcgcggctc
      481 ggagtctgaa agcgaaattg acgcctctcg tcgaaatcat agtggcagcc ggcacctgtc
      541 tcgtactttg gtacggggtg agactcgcac tcgccggaac aatcacacca ggctctttgc
      601 tggtctttct tctctatctc ggcaagatgt acaagcccat gcgcgacctc tcgaagatga
      661 cggatacaat ttcaaaaaca caggtcggtt acgaacgtat tcgtgaaata gttgatacgg
      721 atcgcgaggt tcgcaatctg ccgggcgcac gaccagcgcc gaagctgaaa ggtgagatcg
      781 aattccgtca tgtcgacttc aagtatgtag atcgtccgct aacgctgaaa gacgtcaact
      841 tcaaactcaa gcccggtcag cttggcgctc tcgttgggcc aactggtgcg ggcaagacaa
      901 caatcgcaag cttgattgct cgtttctacg aacctaccgg tggacaggtc ataatcgacg
      961 gcaaagacat tcgttcttac cggataaaat cgttacgtca acagattagt ttcgtcttgc
     1021 aggagagtct tctatttcaa gccactatct ggcaaaacat tgcgtacggc cggccagaag
     1081 cttcacgaca tgaaatcatc gaagctgcca aactcgcgaa tgcggatgag ttcattgccc
     1141 aacttccgga aggttacgac acgatggttg gtgaacgcgg cgtaactctc tccggcggtc
     1201 aacgtcaaag gattgcaatt gcccgggcca ttgttcgcaa cagccccatt ctaatactcg
     1261 acgaaccaac ctcaggtctg gatgcggctt ccgaagagtt ggttttcgat gcgctgcaaa
     1321 ggttaatggc aggcaagacc tcaatagtga ttgctcatcg actcgcaacg attcagaatg
     1381 cagacgtaat attcgtcatt gatggcggca ccattgttca gcacggcact cacgaggagt
     1441 taattaagag tgacgggttg tacgcgcacc tttaccaaac gcaattccga gatcaagaag
     1501 tagagatgtt gtcgtgatgc ccgttaccga cgcggatctg ctgcttgaaa ttggtgacat
     1561 cgaatcgcgc tgccgggagt ctgctgcact gaggaatcgt actgccagcc taatttccga
     1621 aagacaatct aatccctcat ggttagtgtt tcgcggatga cagctgccgg tgatcacgga
     1681 gac
//
LOCUS       DATCGC010002046         1587 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_261032, whole genome shotgun sequence.
ACCESSION   DATCGC010002046 DATCGC010000000
VERSION     DATCGC010002046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1587)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1587)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1587
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_261032"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..301
                     /locus_tag="VIJ87_19455"
     CDS             <1..301
                     /locus_tag="VIJ87_19455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446594.1"
                     /translation="LLTDAGAITCLEAATGKVIYQSRMPVATHFTASPVAFDGNILLV
                     SEDGDSFIIKAGSTPEVLYVNPLGEPVYASPAIASGSILIRGASTLYCISNSKAK"
     gene            complement(431..>1587)
                     /locus_tag="VIJ87_19460"
     CDS             complement(431..>1587)
                     /locus_tag="VIJ87_19460"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY5446595.1"
                     /translation="RAQDWPQWRGPNRDGISKETGLLKQWPATGPALVWKATGAGGGY
                     SSLAISGGRIFTMGVRAGRENVIAFDVATGKQLWATPHGAVFSNDRGDGPRGTPTVDG
                     DRLYALGGNGDLSCMDTKTGKIVWTLNILQKFGGENPKWGISESPLVIGEKVLVNPGG
                     PNASVMALNKKDGTVIWKTQSDQAGYSSAMPVQIGGTTQIVFFTDQRALGVDLKDGKF
                     LWSYPKASNNVANVATPIVRGNRVFVSSDYGTGAALVEIKADGTAQEVYFTKEMRNHH
                     SSSILIGDYLYGFSSGILTAMRFDTGAVAWKDRSVGKGSLVYADGNLYAFSENGVVGL
                     IEATPTGYVEKGRFRIQQDSLPTWTHPVIAGGRLYLRDQNTIYAYDVKQK"
BASE COUNT          385 a          445 c          373 g          384 t
ORIGIN      
        1 tttgctaaca gatgcaggag caataacctg tttggaggcg gctacaggca aggtcattta
       61 ccagtcacga atgccggtgg cgactcactt cacagcgtct ccagtcgcat ttgatggaaa
      121 catcctgtta gtgagtgagg acggagacag tttcataatc aaggctggat caacccctga
      181 agttctatac gttaatccac tcggtgagcc agtctacgcg tcaccggcga tagctagtgg
      241 gagcatccta attcgcggag caagcacgct ctactgcatt tccaactcaa aggcaaaata
      301 gaacgaaaac aaataagccg cacatttagg caataaacgc ggatcagaaa aggtttaggc
      361 agggtaagcg cccttgacct tcttactttc tgatccgcgt ttgtctgcgt aaacctgcgg
      421 ctaaaaccac ttacttctgt ttcacgtcgt aagcgtagat cgtattttga tcacgcaagt
      481 aaagtcggcc gcccgcaatc acaggatggg tccacgttgg caacgagtct tgctgaattc
      541 tgaatcttcc cttttcaaca tagcccgttg gcgttgcttc aattagacca actaccccgt
      601 tttcactgaa ggcgtaaaga tttccgtcag catacacaag tgagcccttg cctacgcttc
      661 gatccttcca cgctactgcc ccggtatcaa aacgcattgc ggtcagaatg ccgctcgaga
      721 agccatagag atagtcacct atgagaatcg agctgctgtg gtgatttcgc atttccttcg
      781 tgaagtaaac ttcctgcgcg gtgccgtctg ctttgatttc gacaagtgcc gcaccggtgc
      841 cgtaatcaga agaaacaaaa acacgattgc ctctgacaat cggagtggcc acgttcgcaa
      901 cgttattgga cgctttcgga taagaccaaa ggaacttgcc gtccttgaga tcaactccca
      961 acgcgcgctg gtcggtgaag aatacaatct gtgtcgtgcc gccaatctga acaggcatcg
     1021 ctgaggaata acctgcctgg tcactctggg tcttccaaat gacggtgccg tctttcttgt
     1081 tcagtgccat gaccgatgcg tttggcccgc ctgggttcac caaaactttt tcaccaatta
     1141 cgagtggcga ttcgctgatg ccccacttcg ggttttcacc accaaacttc tggagaatgt
     1201 tgagagtcca aactattttg ccagtcttcg tgtccataca tgaaagatca ccattaccgc
     1261 ccagcgcgta gagtcgatca ccatcaacgg tgggtgtgcc cctcggtcca tcaccacgat
     1321 cgttgctgaa taccgctcca tgcggcgtgg cccacaattg ctttccagtt gcgacatcaa
     1381 atgcaatcac attctcgcga ccagcacgca cacccatcgt gaagattcga ccgccggaaa
     1441 tagctagaga agaatagccg ccgcccgctc cagttgcttt ccaaaccaaa gcaggtcccg
     1501 tcgctggcca ttgcttcaga agcccagtct ccttcgatat gccgtcgcga ttcggtccgc
     1561 gccactgcgg ccagtcttga gctcttg
//
LOCUS       DATCGC010002047         1014 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_63630, whole genome shotgun sequence.
ACCESSION   DATCGC010002047 DATCGC010000000
VERSION     DATCGC010002047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1014)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1014)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1014
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63630"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(249..>1014)
                     /locus_tag="VIJ87_19465"
     CDS             complement(249..>1014)
                     /locus_tag="VIJ87_19465"
                     /inference="COORDINATES: protein motif:HMM:NF036809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycoside hydrolase family 2 protein"
                     /protein_id="HEY5446596.1"
                     /translation="SQILQADGIKVGAEHLRRIMPRNMGSLYWQLDDCWPVASWSSID
                     YTGRWKALQYFAKRFYAPVLISPHVDGDNLNFFVVSDLPQPEKATMNVELRDLEGNKL
                     ATFNKELTVFPVMSRSYFSLPVKSLLENRDAKNLLVYCELVVNGKTVSTNEYFFEPFK
                     NLSLPTAQVKVDAVSIPNGYKLTVTSNKLAKAVYLSSKTAGFFSDNYFDVLPDKPVEI
                     EFRTRVKNPVEEFRGQLQVRSLKDAFSSSEVTVTNK"
BASE COUNT          241 a          255 c          268 g          250 t
ORIGIN      
        1 ggattccctt tagtgacgcc cttcgcgcta atgagcgtgc tcttctgaga ccgcaggcgt
       61 cctcgcctgc atttcgtcac gactagcgga cctcggtggc gacgtttgca ggcgaggacc
      121 ctgcggtccc agaagagcgc gcccgttact gccgagtagc tactaaaggg ttagctggaa
      181 aagtaaagtg gcagatcaag cgttccagac agatgcagag gacaacaaat gctcggtagt
      241 tccagacgct acttgttcgt tacggtgacc tcggaactac tgaatgcgtc tttcagtgag
      301 cgaacctgca gctgaccgcg aaactcttcg actgggtttt ttacacgggt gcggaactcg
      361 atctcaactg gcttgtccgg cagcacatcg aagtagttgt cagaaaagaa cccagcagtc
      421 ttgctcgata ggtaaacagc cttcgccagt ttgttggatg tgacggtcaa tttgtaaccg
      481 ttgggaatac tgacggcatc gactttgact tgcgcggttg gcagcgagag gttcttgaaa
      541 ggttcgaaga agtattcatt cgtcgaaact gtttttccat taacgaccaa ttcgcagtag
      601 accagcagat tcttagcgtc tctgttttca agcagactct tgaccggcaa actgaagtac
      661 gaccgactca tgacagggaa aacagtcagc tccttgttaa aggttgccag cttgttgcct
      721 tcgaggtctc gtagttcaac attcatcgtc gctttttctg gttgcggcaa atcggaaacg
      781 acaaagaagt tgaggttgtc gccgtcaaca tgcgggctga tcaaaaccgg agcatagaat
      841 cgcttggcaa aatactgtag cgccttccaa cgcccggtgt agtcgatact tgaccacgaa
      901 gcgactggcc aacagtcgtc gagttgccaa tatagcgaac ccatgtttcg cggcatgatg
      961 cgtcgcagat gttccgcgcc gacttttatt ccatcggctt gtaaaatctg cgac
//
LOCUS       DATCGC010002048         1171 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_296772, whole genome shotgun sequence.
ACCESSION   DATCGC010002048 DATCGC010000000
VERSION     DATCGC010002048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1171)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1171)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1171
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_296772"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..404)
                     /locus_tag="VIJ87_19470"
     CDS             complement(<1..404)
                     /locus_tag="VIJ87_19470"
                     /inference="COORDINATES: protein motif:HMM:NF012787.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEY5446597.1"
                     /translation="MRPRRINNVLAVFTLVVTLMGLTAFDVWSMGSRVPAVGTMVEDF
                     HLTDLEGKSQSLSQYRGKIVLVNFWATWCKPCTTEMPAMQAMYDKLRDKGFVVLAVNE
                     LEDDAKVREHIKQYGHTFPVLMDRDNKVANQFG"
     gene            complement(434..>1171)
                     /locus_tag="VIJ87_19475"
     CDS             complement(434..>1171)
                     /locus_tag="VIJ87_19475"
                     /inference="COORDINATES: protein motif:HMM:NF024946.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HEY5446598.1"
                     /translation="IDGLGEDGATGEGEPSNFSANGLGDIRVGAKYNVLPTLSSMVVL
                     GFGVYLPTGNTHAHDSNEEVMESSTQLGRGNVGLNPTIYQTYELIPHRLNQFASASYR
                     HTFRNNNGYQFGDEYMLNAGLNLVTTPWLVLTNQFIYRYLVHDNFSSSLSQSLPSPTP
                     APGPPNPIDTNITDRQVPTTGSTYHAFSPGFQLNLGQLVESSWTEMTSAYFFAQIPFA
                     RDSNNSLAQGTSYIFGLTRSFQMLSPS"
BASE COUNT          287 a          302 c          302 g          280 t
ORIGIN      
        1 ccgaattgat tcgccacctt gttgtcgcga tccataagga ccgggaacgt gtggccatat
       61 tgcttgatat gttcgcggac cttggcatcg tcttccaatt cgttgacggc caataccacg
      121 aaacccttgt cacgcagctt gtcatacatg gcttgcatgg cgggcatttc ggtcgtgcag
      181 ggtttgcacc aggtggccca gaagttcacg agcacgatct tgccacgata ctggctgagg
      241 ctctgagact tgccctccag atctgtcagg tgaaaatctt caaccatcgt accgacagct
      301 gggactcgag aacccatgct ccagacatcg aaggcggtca atcccatcaa tgtgacaacc
      361 agcgtgaata ccgctagcac attattgatt ctccttggtc gcatgtcagc ctcctctcat
      421 gtcaccgctt catttatgaa gggctcaaca tttgaaacga gcgtgttagc ccaaagatgt
      481 aactggttcc ctgcgccaga ctattgttgg agtcccgggc gaacgggatc tgtgcaaaaa
      541 aataggccga tgtcatctcg gtccaacttg attcaacgag ctgtcctaaa ttgagctgaa
      601 aaccaggcga aaacgcatgg taggtcgagc cggtggtcgg cacttgccta tccgtgatgt
      661 tggtatcaat tggattcgga gggccagggg caggagtggg agatggcaaa gactgagaca
      721 acgatgagct gaaattatca tgcacaagat aacgatagat aaactgatta gtcagaacca
      781 gccagggagt cgtcacgaga ttgagtccgg cattgagcat gtattcgtct ccgaactggt
      841 aaccattgtt gttccgaaag gtatgccggt aactggctga cgcaaattga ttgagccgat
      901 gaggaatcaa ctcataggtt tgatagattg ttggatttaa tccgacattc cctcgaccga
      961 gctgtgtcga cgattccata acctcttcat tactgtcatg ggcgtgagta ttgcctgtcg
     1021 ggaggtagac accaaatccc agcaccacca tgctgctcag ggtcggtaag acgttgtact
     1081 tcgccccaac gcgaatgtcc cccagaccat tggcggagaa attcgacggt tcaccctcgc
     1141 cagtggctcc atcctcgccc aggccatcaa t
//
LOCUS       DATCGC010002049         1087 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_261081, whole genome shotgun sequence.
ACCESSION   DATCGC010002049 DATCGC010000000
VERSION     DATCGC010002049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1087
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_261081"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1087)
                     /locus_tag="VIJ87_19480"
     CDS             complement(<1..>1087)
                     /locus_tag="VIJ87_19480"
                     /inference="COORDINATES: protein motif:HMM:NF012531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015930 - glutamate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glutamate synthase central domain-containing
                     protein"
                     /protein_id="HEY5446599.1"
                     /translation="TRAVRASAISQCSTFYIASLSHKTIIYKGMLTAGQLHTFYPDLT
                     EKRLVSALALVHSRFSTNTFPSWARAHPYRYVAHNGEINTLRGNINWMRARETKFESR
                     LFGSDLQKLLPVIDSEGSDSAMFDNALEMFVLAGRSLPHAVMMMIPEPWTGDPTMSDE
                     KRAFYEYHSCLTEPWAGPAAISFTDGVRIGAVLDRNGLRPSRYYVTKDDLVVLASEVG
                     VLDIPADQIVAKGRLAPGKMFLVDTELGRIVTDDELKEELAKAQPYREWLKQNSIHLD
                     DLPAAPYVHEINSSTVLLRQRAFGYTNEDLRLLLQPMAVDGNEPVGSMGTDTPLAVLS
                     LRPQLLYNYFKQLFAQVTNPPVDGIREE"
BASE COUNT          268 a          274 c          291 g          254 t
ORIGIN      
        1 ctcttcgcga atgccatcaa cgggaggatt agtgacctgt gcaaacagct gcttgaagta
       61 gttgtagagc agctgcgggc ggagagataa aaccgccagt ggcgtgtcgg ttcccattga
      121 gccaaccggt tcattgccat ctacagccat cggttgtagg agcagtctta ggtcctcgtt
      181 tgtgtaacca aacgcgcgtt gacgcaaaag cacagtcgac gaattgatct cgtgaacata
      241 tggcgccgcc ggcagatcat ccagatgaat agagttttgt ttcaaccatt cacggtatgg
      301 ctgggctttg gcgagttctt cttttagttc atcgtcagtg acgatacgac ctaattcagt
      361 atcgaccaga aacatcttgc ctggtgcaag tcgacccttt gccacgatct gatcggcagg
      421 aatatcaagg acgccaacct ccgatgcaag cactaccaaa tcatccttcg tcacgtaata
      481 gcgggatggt cgcaatccat tgcgatcgag aacggcacca atgcgaacgc catcagtaaa
      541 ggaaattgcg gctgggccag cccagggttc ggtcaggcac gaatggtatt cgtagaaagc
      601 ccgcttctcg tcgctcatgg tcgggtcgcc ggtccatggc tccggtatca tcatcattac
      661 agcgtggggc aatgatcgac ccgccagcac aaacatctcg agggcattgt cgaacatcgc
      721 cgagtcgctg ccttccgaat caatcactgg cagaagcttt tgcagatctg atccaaacag
      781 ccttgactca aacttcgtct ccctggctcg catccagtta atgttgccac gcagagtgtt
      841 tatctcaccg ttgtgagcaa cataacgata tggatgtgca cgagcccaac tgggaaaggt
      901 gttagtgctg aaacgcgaat ggactaatgc gagcgcggaa acgagtcttt tttctgttag
      961 gtcgggatag aaagtgtgca actgaccggc agtcagcatt cccttgtaga tgattgtctt
     1021 gtgagaaaga cttgcaatgt agaacgtgga gcactgcgaa attgcggagg cccgaacggc
     1081 gcgtgta
//
LOCUS       DATCGC010002050         1504 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_31919, whole genome shotgun sequence.
ACCESSION   DATCGC010002050 DATCGC010000000
VERSION     DATCGC010002050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1504
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31919"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(271..1302)
                     /locus_tag="VIJ87_19485"
     CDS             complement(271..1302)
                     /locus_tag="VIJ87_19485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012222646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS481 family transposase"
                     /protein_id="HEY5446600.1"
                     /translation="MTTADKVIKTKVGLLELGKQLGNVTKACRVMGYSRDSFYRFKEL
                     YETGGEAALQEISRSKPNLRNRIAEAVESAVVEVAIEEPAWGQVRVANELKKRGLTIS
                     PAGVRCVWLRHDLENIKKRLKALEAKSLQEGWVLTEAQMVALEKAKEDKEAHGEFESE
                     CPGYCGAQDTFYVGTLKGVGRIYQQTFIDTYSKVAFGKLYDRKTPITAADLLNDRVLP
                     FFDEHEIVLSRVLTDRGTEYCGTDGHEYELYLAVEDIDHTRTKAKTPQTNGICERYHK
                     TVLNEFYRVAFRKKIYRSLDELQTDLDSWLKLYNEDRPHQGRWCYGKTPMQTFIDSIP
                     LAKEKMIAA"
BASE COUNT          339 a          458 c          315 g          392 t
ORIGIN      
        1 agttgcggca ttattaatca agcattacca ggatcaaact atcggtcaca ctgttctcgt
       61 gtgaaggttt gcccggtaat cgaagaagca ctcgccaaga acatccgtaa cgtctaatag
      121 ctgcacaata gtagatgcgg tgccttagag ccaacgattc cgaaatgaca cggagtccac
      181 gaatcgattg tgcctaagat gtataagtca atacctgatc tgacagtcgt tgtacgagtc
      241 ctcgtcgtca gtcatggtta attcctccac tcacgccgca atcattttct ctttggccaa
      301 gggaatacta tcgatgaaag tttgcatcgg agtcttcccg tagcaccatc tcccctgatg
      361 gggcctgtcc tcgttgtaca gtttcaacca tgagtccaga tcggtttgga gctcatcgag
      421 cgatcggtaa atctttttgc gaaaggccac tcggtagaac tcattgagca cggtcttgtg
      481 ataccgttca cagatgccgt tggtctgggg agtcttggcc ttggtccgag tgtgatcaat
      541 atcttccacc gccaggtaaa gctcgtactc atggccgtcg gtcccacagt actccgttcc
      601 ccgatccgtc agcactctcg ataacacgat ctcgtgctcg tcaaagaacg gtagcactcg
      661 atcgttgagt aagtcggctg ccgtaatcgg agtcttgcga tcgtagagct tgccaaaggc
      721 caccttgcta taggtatcga tgaacgtctg ttgataaatc cgtcctacgc cctttaacgt
      781 tccgacatag aacgtatcct gagcgccgca atacccggga cattcgctct cgaattctcc
      841 atgcgcttct ttatcctcct tggctttctc caaggccacc atctgcgcct cggttagaac
      901 ccatccttcc tgtaaactct tggcctccag ggctttgagt cgcttcttaa tattctccag
      961 atcgtggcgc agccaaacac agcgcacccc ggccggtgaa atcgtcagcc cacgcttctt
     1021 taactcattg gccacccgca cttgtcccca tgccggctcc tcgatggcca cctccaccac
     1081 cgcactctca accgcctcgg ctatccggtt ccttaaattc ggcttgctcc gcgatatctc
     1141 ctgcaacgcc gcttcgccgc cggtctcgta gagttccttg aaccgataaa aactgtctcg
     1201 gctatagccc atcactcgac aagccttggt cacattgccc agctgcttgc ctaactccaa
     1261 taatcccacc ttcgtcttaa tcactttatc ggctgtcgtc atctctccct cgcttccttc
     1321 cttcagctat cgctgatgct ttggataacg aggaccttac cacaatccgt cagattaagt
     1381 cttagcactt acacattaag cgacagaagt cctcaccaac ccggaacttc cactacggca
     1441 agtctctaag catcgaacga aaaaattacg gctgcccgta tgccactcat acataactat
     1501 cgct
//
LOCUS       DATCGC010002051         1837 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_129297, whole genome shotgun sequence.
ACCESSION   DATCGC010002051 DATCGC010000000
VERSION     DATCGC010002051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1837)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1837)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1837
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129297"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            22..>1837
                     /gene="topA"
                     /locus_tag="VIJ87_19490"
     CDS             22..>1837
                     /gene="topA"
                     /locus_tag="VIJ87_19490"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003917 - DNA topoisomerase type I (single
                     strand cut, ATP-independent) activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HEY5446601.1"
                     /translation="MAKNLVIVESPAKAKTINKYLGKDYLVKASIGHIKDLPAKGLGV
                     DVDNDFEPTYELIPDSKKRNNKKIVSELKKAAKEAEAIYLAADPDREGEAICQHLAEE
                     IVPKKPAKPAFRVMFNEITKRAVNEAFEHPRQIDANLVDAQQARRVLDRLVGYKVSPL
                     LCKTIGGRLSAGRVQSVALRMVVEREREIEQFIKTEYWTIGANLSSKLPPAFDSRLFK
                     IDEQTVKTSGFDQELKKNEVLINEQAKADTIVSEAQQQTFVVNDVTTKERKRNPVPSF
                     ITSKLQQEASRKLGFAVKKTMMIAQHLYEGIELGSEGSVGLITYMRTDSTRVSDAALG
                     EVRDFIGKQYGEQYLPEKAIHYRSKKDAQDAHEAIRPTEVIRTPDSLAQYLKPEELKL
                     YRLIWQRFVASQMMPAVFDQTTIDIQAGRYIFRATGSVQKFDGFLKVYQEGRDEKADD
                     DEAELTLPLVEKGETLKLNSITPEQHFTEPPPRYTEATLVKALEEKGIGRPSTYAAIM
                     STIQEREYVEKLQGRFHPTALGKTVNDLLIDGGFDDLFNETYIARMEEELDEIEEGKI
                     RWTKALREFYNKFEGDLKEFQKYIKDIKETSVPTDEVCL"
BASE COUNT          521 a          448 c          481 g          387 t
ORIGIN      
        1 cccaagacct atcttaaaga aatggcaaaa aacctagtca tagttgaatc gccggccaag
       61 gcgaagacaa tcaataaata cttaggaaag gactatcttg ttaaggcctc gataggccat
      121 atcaaagatt tgcctgccaa gggtctcggt gtagatgtcg ataacgattt cgaacccacc
      181 tacgaactga tccccgattc aaagaaacgt aacaacaaga agatcgtctc ggaattgaag
      241 aaggctgcga aggaagcaga agcaatctat ctagctgctg accctgaccg tgaaggcgaa
      301 gcaatttgcc agcatcttgc cgaagagata gtccccaaga aacctgccaa gcctgcgttt
      361 cgcgtgatgt tcaatgagat cacgaaacgc gcagtcaacg aggcctttga acatccgcgc
      421 cagatcgatg cgaacctggt ggatgcacaa caagcgcgtc gtgttctgga tcgcttggtt
      481 ggctacaaag tttcaccgct gctttgcaaa acaattggtg gccgtttgag cgctgggcgg
      541 gttcagtcag ttgcgctccg catggttgtc gaacgcgagc gcgagatcga acagttcatc
      601 aagactgaat actggacgat tggcgcgaac ctcagttcga aactaccgcc tgcttttgat
      661 tcacggcttt tcaaaatcga tgagcaaaca gttaagacga gcggttttga tcaggagctc
      721 aagaagaacg aagtcttaat caatgaacaa gctaaggctg atacgatcgt ttctgaagct
      781 cagcagcaga cgtttgtcgt caacgacgta accaccaaag agcgaaagcg caatccagtt
      841 ccgtcgttca tcacttcaaa actgcagcag gaagcttcgc gcaaactcgg cttcgcagtt
      901 aagaagacga tgatgatcgc acagcatttg tacgaaggta tcgaactcgg ctcagaaggt
      961 tctgttggct tgattactta catgcgtact gactcgacgc gtgtttcaga cgcagcgctt
     1021 ggtgaagtgc gtgacttcat tggcaaacag tacggcgaac aatatctacc cgagaaagcg
     1081 attcactatc ggtcgaagaa agacgcgcag gatgcgcacg aagcgattcg tccgactgaa
     1141 gtaatccgca cacctgattc gttagctcag tacctgaagc cggaagagtt gaaactctat
     1201 cgactcatct ggcagcgctt tgttgcttcg cagatgatgc cggcggtgtt cgatcaaaca
     1261 acgattgata ttcaagcagg tcgctatatc ttccgcgcga ctgggtcagt tcagaagttc
     1321 gatggttttc tgaaggtcta ccaggaagga cgcgacgaaa aagctgacga cgacgaagca
     1381 gaattgacat tgccgctcgt cgaaaagggc gagacgctga aactgaattc gatcactccg
     1441 gaacaacatt tcactgaacc acccccgcgt tacaccgaag cgactttggt aaaggctctc
     1501 gaagaaaagg gaatcgggcg gccgtcaact tacgcggcga tcatgtcgac gatccaggag
     1561 cgtgagtacg tcgagaagct ccagggacgc tttcatccca cggcgctcgg caagactgtc
     1621 aacgatcttc tgatcgacgg cggcttcgac gatctcttca acgagacgta catcgcgcgc
     1681 atggaagaag agctcgacga gatcgaagaa gggaagatcc gttggaccaa ggcgctgcgc
     1741 gagttctata acaagttcga aggggacctt aaagagtttc agaaatacat caaggacata
     1801 aaagagacga gcgtgccgac cgacgaggtc tgtctga
//
LOCUS       DATCGC010002052         1336 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_365267, whole genome shotgun sequence.
ACCESSION   DATCGC010002052 DATCGC010000000
VERSION     DATCGC010002052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1336)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1336)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1336
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_365267"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1336)
                     /locus_tag="VIJ87_19495"
     CDS             complement(<1..>1336)
                     /locus_tag="VIJ87_19495"
                     /inference="COORDINATES: protein motif:HMM:NF039503.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF5695 domain-containing protein"
                     /protein_id="HEY5446602.1"
                     /translation="TPTSTTLQPGSSKTYGLKFLVSDEIRNIESALANNKRPVAVGIP
                     GYVLPMGLAGQLFLNSQRRVVAHEVEPAGAITLRETKPTASGWKHYELSAFKWGRARI
                     VFTYDDGSKQSINYYVIKPAPQAVDDLGNFLMTKQWFVDPNDPFHRSPSVMSYDRETN
                     KIVTQDSRVWIAGLGDEGGSGSWLAAAMKQFGQPKPDEVAKYEQFIDNVLWGGVQYKD
                     GANKYGVRKSLFYYSPTDVPDYKYDASLNWTTWTSWKKSDSESIGRGYNYPHVVAAYW
                     SMYRLARNHPGLVKNHEWTWYLDQAYQTTKFMFGRGPDGKRRVGYVELGLMEGDIVLA
                     VLNDLKREGWTQQANDVEALMKERADRWKKEAYPFGSEMAWDSTGQEEVYAWCKYFGF
                     DDKAAVSLNSIIGYMPTIPHWGYNGNARRYWDFLYGGKLRRIERQLHHYGSGL"
BASE COUNT          299 a          372 c          327 g          338 t
ORIGIN      
        1 caatcctgag ccgtaatgat gaagctgtcg ttcaatgcgt ctgagctttc cgccatagag
       61 gaagtcccag tatcgtcgcg catttccgtt gtagccccaa tgtggaatcg tcggcatata
      121 gccgataatc gagttgagcg agactgctgc tttatcgtca aaaccaaagt atttacacca
      181 ggcataaact tcttcctgac cggttgagtc ccacgccatc tcgctgccga acgggtaagc
      241 ttctttcttc caacgatccg ccctttcctt catcaacgcc tcaacgtcgt tggcctgttg
      301 agtccagcct tcgcgcttta gatcgttgag gactgcgagc acgatgtcgc cttccatcaa
      361 accgagttca acgtaaccga cgcggcgttt cccgtccggc ccgcgaccaa acatgaactt
      421 ggtcgtctgg tacgcctgat ccagatacca ggtccactca tgattcttta ccaggccggg
      481 atgattacgc gcgagacgat acatcgacca gtaggcagcg acgacatgcg ggtagttata
      541 accacgaccg atcgattccg aatcactctt cttccaactt gtccacgtcg tccaattcag
      601 actcgcatcg tacttatagt caggcacgtc agtaggtgag tagtagaaca gactcttacg
      661 gacgccgtac ttattcgccc catctttgta ttgaactcct ccccagagca cgttgtcgat
      721 gaactgttcg tacttcgcga cttcgtctgg ttttggttgg ccaaactgtt tcattgcggc
      781 ggccagccac gaacctgaac ctccttcatc cccgagaccg gcaatccaca cgcgactgtc
      841 ctgcgtgacg atcttattag tttcacggtc gtaactcatc acggatggac tgcggtgaaa
      901 tggatcattc ggatcaacga accactgttt ggtcatgagg aagttgccaa gatcatcgac
      961 cgcctgtggg gcgggtttga ttacgtaata gttgatcgat tgctttgagc catcatcgta
     1021 agtgaagacg atccgagcgc gtccccattt gaaggcgctt agttcatagt gtttccagcc
     1081 gctcgcagta ggtttggttt cgcgaagcgt gatcgcacca gccggttcga cctcatgcgc
     1141 tactactcga cgctgggaat tcaggaacaa ctgtccagct agacccatcg gcaatacgta
     1201 accaggaata ccgaccgcga ccggacgttt gttattggcg agggccgact caatgtttcg
     1261 aatttcatcc gatacaagaa acttcaagcc gtaagttttg gatgagcccg gttgcagcgt
     1321 tgtcgaggtt ggcgta
//
LOCUS       DATCGC010002053         1126 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_365278, whole genome shotgun sequence.
ACCESSION   DATCGC010002053 DATCGC010000000
VERSION     DATCGC010002053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1126)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1126
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_365278"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1126
                     /locus_tag="VIJ87_19500"
     CDS             <1..>1126
                     /locus_tag="VIJ87_19500"
                     /inference="COORDINATES: protein motif:HMM:NF019344.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HEY5446603.1"
                     /translation="GSLDAANILKPALSRGEIQCIGATTPAEFRKSIEKDRSLERRFQ
                     AVKVPPPSEEEAVSILDGVRERYESFHQVRYSDDALEAAVYQSHRYIPDRFLPDKAID
                     VIDEAGARVKLRVRREQGNLADWNEINEWSRSYGDTSGLRNQEDALVSAEVTRDDVED
                     VIARWTGIPVNSLKEEETQKLLRIEVELHKRVVSQRPAISALARAIRRSRAGLKNPLR
                     PVGSFLFLGPTGVGKTEVARSLAQFLFSSERALIRFDMSEFMEKHSVSKLIGSPPGYV
                     GHEEGGQLTERIKRSPYAVLLFDEIEKAHPDIFNILLQVFEDGILTDALGNTVDFKNA
                     IIIMTSNIGARFIQKKGTLGFQANVDASREKMEEMVMSSVR"
BASE COUNT          274 a          267 c          306 g          279 t
ORIGIN      
        1 ggggtcgtta gacgcagcaa atattctgaa gccggcattg tcgcggggcg agattcagtg
       61 catcggtgct acgacacccg ccgagtttcg taagtcgatt gaaaaagatc gttctctaga
      121 acgtcgtttc caggctgtaa aagttccacc accttcagaa gaagaagccg ttagtattct
      181 tgatggcgtg cgcgagcggt acgagagttt tcaccaggta cgttattcgg acgacgccct
      241 tgaagctgcg gtctaccaat ctcatcgcta catcccagat cgtttcctgc ctgacaaagc
      301 tattgacgta attgacgaag ccggtgcgcg agtaaagctg cgtgtcagac gcgaacaggg
      361 caatcttgct gattggaacg aaataaacga atggtcacgt agctatggcg acacttcggg
      421 tttgcgaaac caggaagacg cactggtttc ggccgaggtt actcgcgacg atgttgaaga
      481 tgttattgcg cgctggactg gaatcccggt taattcgctg aaggaagaag aaactcagaa
      541 gctactgcga attgaagttg agcttcacaa gcgagttgtt tcccagcgcc cggcaatttc
      601 cgcactggcc cgtgctattc gacgttcacg cgctggactg aaaaatccgt tacgaccagt
      661 cggatccttc cttttccttg ggcctacagg tgttgggaag accgaagttg cgcgttctct
      721 cgcccagttt ctgtttagca gtgaacgggc tctgatacgt tttgatatgt cagagttcat
      781 ggaaaaacat tcggtttcaa agttgattgg ttcgccgccg ggatacgttg ggcacgaaga
      841 gggtgggcaa ctaaccgaac gtatcaagcg ctcgccctac gcagttttgc tttttgacga
      901 gattgaaaag gcccatccag acatcttcaa cattctcttg caggtgtttg aggacggtat
      961 tttgacagac gccctgggta atacagtcga cttcaagaat gcaatcatca tcatgacgtc
     1021 taacatcggt gcccgtttta ttcagaagaa gggcacactc ggtttccagg ccaatgtcga
     1081 tgcaagccgc gagaagatgg aagagatggt catgtcgtcc gtacgt
//
LOCUS       DATCGC010002054         1259 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_365303, whole genome shotgun sequence.
ACCESSION   DATCGC010002054 DATCGC010000000
VERSION     DATCGC010002054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1259)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1259)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1259
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_365303"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            27..752
                     /locus_tag="VIJ87_19505"
     CDS             27..752
                     /locus_tag="VIJ87_19505"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEY5446604.1"
                     /translation="MERSMNVLVVDVGGTHVKVLATGHKVHREFDSGPTLTPKQMVAG
                     VKKLVADWNYEAISIGYPGPVLRNRPVSEPWNLGKGWAGFDFEAAFKCPVKVVNDAAM
                     QALGSYKGGKMLFLGLGTGLGSAMVVDGIVEPMELGHLPYKKATFEDYVGIRGVKKYG
                     KKKWRSFVTDVVQRLVAALEPDDVVLGGGNVKKLKVLPSGSRAGDNDNAFLGGFRVWE
                     KTDRANRSKSNRTVSRVTRKPGR"
     gene            793..>1259
                     /locus_tag="VIJ87_19510"
     CDS             793..>1259
                     /locus_tag="VIJ87_19510"
                     /inference="COORDINATES: protein motif:HMM:NF016830.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate porin"
                     /protein_id="HEY5446605.1"
                     /translation="MIFILCSSAAVAPSQDANEASAGTRALAPLPFQLVLPRDHLLGD
                     WYGTRTWLEDHGITPTLTFVTDSLGNPSGGNEQGFTTANNLGLDLNFDLEKLGVVEGG
                     SFLLSMSYRFGGSLSANYIHNVFTVQQVFGGETFHLINVAYLQKLLDDRVELRL"
BASE COUNT          280 a          323 c          367 g          289 t
ORIGIN      
        1 caagccttgc gaaggcgagc tgaataatgg agcgctcgat gaatgtgctg gttgtcgatg
       61 tcggcggaac tcacgtgaag gtccttgcca ctggccacaa ggttcatcgc gagtttgatt
      121 ccggtccaac gttgacgcca aagcaaatgg ttgccggtgt gaagaagctc gtcgcggatt
      181 ggaactatga agctatttcc atcggttacc ccggtccagt tcttcggaac aggccggtct
      241 cggagccatg gaaccttggt aaagggtggg ccggcttcga tttcgaagcg gctttcaaat
      301 gtccggtcaa ggtcgtgaac gatgcagcga tgcaggcgct cgggagttat aagggtggca
      361 agatgctgtt tctcggtctc ggaaccggcc ttggatccgc catggttgtg gatggcatcg
      421 tcgagcccat ggagttaggc cacctgcctt ataagaaggc gacgtttgaa gactacgtcg
      481 ggatccgagg agtaaagaag tatggcaaga aaaaatggcg gagctttgtg accgacgtcg
      541 tgcagcgtct ggttgccgcc ctcgaacctg acgacgtagt cctcggagga ggtaacgtaa
      601 agaaactgaa agtgctacct tctggtagtc gtgccggtga caatgacaac gcatttctag
      661 gagggtttcg cgtttgggag aaaaccgatc gagccaatcg ctctaaatcc aaccgaacag
      721 tttcaagagt cacgaggaaa cctgggagat aaaaccatcg tgcacaaaga tttccgtgtc
      781 cgtgtctcga tcgtgatctt tattctttgc agctcagcgg ctgtggcgcc ttctcaagat
      841 gccaatgaag cgtccgccgg cacgcgagcg ctggcaccgc tgccgtttca gttggttttg
      901 cctcgcgatc atctgctcgg ggactggtac ggcacgcgca cgtggctcga ggaccatggc
      961 atcactccga ccttgacctt cgtcacagac tctctcggta acccgagcgg tgggaacgaa
     1021 cagggtttca cgacggccaa caatctgggc ctcgacctga acttcgattt agaaaagcta
     1081 ggcgtcgtgg aaggtgggtc gtttttgctt tcaatgtcgt accgtttcgg cggcagcctg
     1141 tcggcaaact acatccacaa cgtcttcaca gttcagcaag tcttcggcgg cgaaacattt
     1201 catctgatca acgtggccta cctccagaag ctccttgatg atcgcgtcga actccgact
//
LOCUS       DATCGC010002055         2165 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_462289, whole genome shotgun sequence.
ACCESSION   DATCGC010002055 DATCGC010000000
VERSION     DATCGC010002055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2165)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2165)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2165
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_462289"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1045
                     /gene="lnt"
                     /locus_tag="VIJ87_19515"
     CDS             <1..1045
                     /gene="lnt"
                     /locus_tag="VIJ87_19515"
                     /inference="COORDINATES: protein motif:HMM:TIGR00546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006497 - protein lipidation [Evidence
                     IEA];
                     GO_process: GO:0042158 - lipoprotein biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HEY5446606.1"
                     /translation="GVYAVGFLILAVSSSLALAAVGRKPKQVMIATLVIVVTCVVTIG
                     SGNSDSYSPSGIPPDLYVVALQPNVPMTMVKTVEEINALRDRHLSMSIQALQSLPKDN
                     IPRLVVWPESPMNFTYASDKTFQELVAKFTRDYHTSLIFNSLEPAPNEGSYNSALLIN
                     EEGRLIAQYDKIRLLAFGEYVPLPRWLGGSLLSGLVGDFTPGSKYTLMPAGGHRAGVF
                     ICIESAYPSIARRLTQEGADVLINISNDGYLGPTAVMRQHLANAIFRAVENGRPLLRV
                     TNSGLSAEIRADGFVQEVTTGFEPAVRSWKVNASLSNKTFYTRNGDLFVELCTGLTVL
                     LFVISVIRKKRVS"
     gene            1051..2161
                     /gene="prfB"
                     /locus_tag="VIJ87_19520"
     CDS             join(1051..1122,1124..2161)
                     /gene="prfB"
                     /locus_tag="VIJ87_19520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_319006089.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HEY5446607.1"
                     /translation="MSDTLTIQELRNTFENLQPRVDQLGGFFDVPAGRQELKQIEQQA
                     SAPDFWNNQEAAQKLLQDRSRLEKKIARQEHFESQVDDAGVLFEFAEEDENSIKELSS
                     LLERLEHELSQAEIEMLLAGENDRRNAICTIHPGAGGTESQDWAEMLLRMYLKWAEQR
                     EFKTEVLEYQPGEEAGLKSVTFRVEGEYAYGLLAAEAGVHRLVRISPFDQAARRHTSF
                     ASLFVYPEIDEDIEVDIKDKDLRVDTYRATGAGGQHINTTDSAVRITHLPTGIVTSCQ
                     NQRSQHQNRAVAMQVLRSRLYELELEKRQAETAELEANKADNSFGSQIRSYVLAPYQL
                     VKDTRTKLEKGNVEAVLGGDIDDFITNFLLTKKAS"
BASE COUNT          572 a          531 c          551 g          511 t
ORIGIN      
        1 tggagtgtat gcggtcggtt ttctaatcct cgctgttagt tcgtctcttg cgctcgccgc
       61 ggtcggtcgc aaaccaaaac aagtgatgat agcgactcta gtaatcgtag tgacatgcgt
      121 cgtcacgatt gggtccggga attctgatag ttattcaccg tctggcattc cacccgacct
      181 ttacgtcgtc gctttgcagc caaatgtgcc aatgacgatg gtaaagacag tggaagagat
      241 aaatgcgctt cgcgatcgtc atttatccat gagcattcaa gcactgcagt cgttgccgaa
      301 agacaacatt ccccgcctcg ttgtttggcc tgagtcgccg atgaacttta cctacgcttc
      361 cgataaaacc ttccaggagt tggtggctaa gttcactcgg gattaccaca cctcattaat
      421 cttcaactca cttgagccgg caccaaacga aggctcgtac aattcggctt tgctcataaa
      481 tgaagaaggt cggctgatcg ctcagtatga taagattcgc ctgctggcgt ttggcgaata
      541 tgtaccgctc ccacgatggt tgggaggctc tttgttatca gggttggttg gcgacttcac
      601 ccccggtagc aaatacacgt tgatgccggc aggtggtcat cgcgctggag tctttatctg
      661 catcgagtcg gcttatccat cgattgcacg aagactcacc caggaaggcg ccgacgttct
      721 tatcaacatt tcgaacgacg gttacctggg cccaacagca gtgatgcgac agcacctggc
      781 caacgcaatt tttcgagcag ttgaaaatgg caggccgttg ctgagagtta ccaacagtgg
      841 cttgtccgca gagatcaggg ccgacggttt tgtgcaggaa gtgacaactg gatttgaacc
      901 ggcggtgcga agttggaaag ttaatgcgtc gttatccaac aagacctttt acaccagaaa
      961 cggcgatctt tttgttgagc tatgtacagg attgacagtt cttttattcg tgatctcagt
     1021 cattcgtaag aagagggtta gttaatcgaa atgagcgaca ctttaacaat tcaggaattg
     1081 agaaacactt ttgagaatct ccaaccgcga gttgaccaac tcgggaggtt tctttgatgt
     1141 accggctggt cgtcaggaac taaaacaaat agaacagcag gcttccgcac cagacttttg
     1201 gaacaaccag gaagccgcac aaaaactttt gcaagaccgc agtcgtctcg aaaagaaaat
     1261 tgcccgacag gaacattttg aatctcaggt cgacgacgcc ggagtgcttt ttgagtttgc
     1321 cgaagaagac gagaattcga tcaaggaact aagttccctg ctcgaacgcc tcgagcacga
     1381 gttgagtcag gccgagattg aaatgttatt ggccggcgaa aacgatcgcc gtaacgctat
     1441 ttgcaccatt catccgggcg cgggaggaac cgagtcgcaa gactgggctg aaatgcttct
     1501 gcgcatgtat ctcaagtggg ctgagcaacg ggaattcaaa acagaggttc tcgaatatca
     1561 accaggcgag gaagctggac tgaagagcgt aacgtttaga gttgaaggtg agtatgctta
     1621 cgggctactc gccgctgaag ccggcgtgca ccggttggtg cgaatctcac cctttgatca
     1681 ggccgcgagg cgacatacat cattcgcatc actctttgtc tatcccgaaa ttgacgagga
     1741 catcgaagta gacatcaaag acaaggacct ccgcgtcgat acctatcgtg caacaggggc
     1801 tggaggccag cacatcaaca caacagattc agctgttcgt ataactcacc tgccaacggg
     1861 aatcgttacg tcctgtcaaa accaacgttc ccaacatcaa aaccgcgcag ttgcaatgca
     1921 ggttctaagg tcacgtctct acgaattgga acttgaaaag cggcaagccg aaactgctga
     1981 actcgaagca aacaaggcag acaactcctt cggttcacag atcagaagtt acgtactcgc
     2041 cccctaccaa ttggtgaagg acacacgcac aaaactcgaa aaggggaacg tcgaggccgt
     2101 gctaggcgga gatatcgacg acttcattac gaattttctg cttactaaga aggcttctta
     2161 gtttg
//
LOCUS       DATCGC010002056         2086 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_261227, whole genome shotgun sequence.
ACCESSION   DATCGC010002056 DATCGC010000000
VERSION     DATCGC010002056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2086)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2086)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2086
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_261227"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            58..330
                     /locus_tag="VIJ87_19525"
     CDS             58..330
                     /locus_tag="VIJ87_19525"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: protein motif:HMM:NF002140.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HEY5446608.1"
                     /translation="MKEEPNRTFEASLEALEQIVRQLESGDLALEKSLELFEQGIRLS
                     RECQERLSQAERRIEVLMRDNQGRSVVSAFEPSQGENNESDDESVF"
     gene            311..1237
                     /locus_tag="VIJ87_19530"
     CDS             311..1237
                     /locus_tag="VIJ87_19530"
                     /EC_number="2.5.1.10"
                     /inference="COORDINATES: protein motif:HMM:NF045485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004337 - geranyltranstransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="farnesyl diphosphate synthase"
                     /protein_id="HEY5446609.1"
                     /translation="MTKAFSESAASPVALELDSLLAGSRALVEVELNSVLPMAGTAPE
                     KVHHAIRWSVFAGGKRFRPALLIATGQVFEAPIKRMLKTACALEMIHTYSLIHDDLPA
                     MDDDELRRGRPTCHVRFDEATAILAGDALQTLAFRTISHDEELDDSTRIALIRELSNA
                     SGTPNGMVAGQALDIEGEARAVSGKELEVIHRLKTGALIIAAARSGAIIARASETELE
                     AITKYAAQLGLLFQITDDLLDVTATAEDLGKTPGKDARSLKATYPGLYGMEETREAAT
                     RAHHSACDALKQIDRPTETLRKIADFILNRTA"
     gene            complement(1249..2043)
                     /locus_tag="VIJ87_19535"
     CDS             complement(1249..2043)
                     /locus_tag="VIJ87_19535"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase family protein"
                     /protein_id="HEY5446610.1"
                     /translation="MKTFVVGDIHGRCAQLLNLLDMLPRDPSSDTLVFLGDLIDRGAD
                     APGCVDHIMKMRRDNPERVICLRGNHEQMLMDFLDGTHNIWLTPVTGGERTFEQYTGR
                     HVVVDSEKDLEDLRHAFEESLPPEHLEFMQETPFYHEDDYAIYVHAGLDEGKHPSESS
                     ELSLLWMRDMDFYKNYRGKPCVFGHTPTPLLPLRGRLGRHGIYISNSAVGLDTGYSQQ
                     SPLSCLSLPDFNLYQTFMDGREETFQITSFIPEALKAMQRKAGYSV"
BASE COUNT          515 a          532 c          564 g          475 t
ORIGIN      
        1 tccgttagtt tggagtagct actaaagggc aactggtgct gatatattgc ggagcctatg
       61 aaagaagaac ccaaccgaac ttttgaagct tcactcgaag cactcgagca gatcgtgcgt
      121 cagctcgaaa gcggtgattt ggcgctggag aagagtctcg aattgtttga gcaaggcatt
      181 cgactttcgc gcgagtgcca ggaacgtctg agccaggcgg agcgacgcat tgaagtcttg
      241 atgcgcgaca atcaagggcg ttcggtggta agcgcgttcg aaccgagcca gggagaaaat
      301 aacgaatctg atgacgaaag cgttttctga aagtgcagca tcaccggtcg cgctcgagct
      361 cgacagtttg ttagctggta gtcgggcact tgttgaagtc gaactcaata gcgtgcttcc
      421 gatggccgga accgcgcctg agaaagttca tcatgcaatt cgttggagtg tcttcgcagg
      481 tggaaaacgg ttccgtccag ccttgttgat agcaacgggc caggtttttg aggcaccaat
      541 caagcggatg ctgaaaaccg cgtgtgccct cgagatgatt cacacctact cgctgattca
      601 cgacgatctg ccagcgatgg atgatgatga gttgcgacga ggtcgaccga cttgccatgt
      661 tcgctttgac gaagcgactg caatcctcgc aggtgacgct ttacaaacac tcgccttccg
      721 aactatttcc cacgacgaag agttagacga ttcgactcgc atcgcgttga tccgagaact
      781 ttctaatgcg tctggtaccc caaacggcat ggtcgcagga caggcgcttg atatcgaagg
      841 cgaggcgaga gcagtttccg gaaaagaact cgaagtgatt catcgtctga aaaccggcgc
      901 cttgatcatc gccgccgcgc gaagtggggc aattatcgca agagcctcag agacggagtt
      961 ggaagcgatt acgaaatacg cagcccagct tggattgttg tttcagatca cggatgactt
     1021 gttggacgtt actgcgactg cggaagacct cggtaagacg cctggtaagg acgcgcgttc
     1081 attgaaggcg acgtatcccg gcttgtatgg aatggaagag acaagggaag ctgctactcg
     1141 tgcccatcac tcagcatgtg acgcgctaaa gcaaattgat cgcccaaccg aaacgctgcg
     1201 caaaatcgcc gactttattt tgaatcgtac ggcgtaactt gggccaccct acacagaata
     1261 cccggccttc ctttgcatag ctttcaacgc ttccgggatg aacgacgtaa tctgaaacgt
     1321 ctcttctctt ccatccataa acgtttgata caaattgaag tcaggtaggg aaaggcagct
     1381 caatggcgac tgttggctgt agccggtgtc caggccaaca gcactgttcg agatgtaaat
     1441 gccgtgacga cctaagcgtc ccctcagtgg aagcagcgga gttggcgtat gtccaaacac
     1501 gcacggcttg ccacgatagt ttttgtaaaa gtccatgtcg cgcatccaga gcagcgacag
     1561 ttccgaactc tcactcggat gtttaccttc atcgagtcca gcgtgaacgt aaatcgcgta
     1621 atcgtcttcg tgatagaacg gagtctcttg catgaactcc aaatgttccg ggggaagcga
     1681 ctcttcaaat gcatgccgca aatcctcaag atctttttca ctatcaacaa ccacgtgtct
     1741 gccggtgtac tgctcaaaag ttcgctcgcc acccgtaaca ggtgttaacc agatgttgtg
     1801 ggtcccatcc aggaagtcca tcaacatctg ttcgtgattt ccgcgtaagc aaatcacgcg
     1861 ttcaggatta tcacgtcgca ttttcatgat gtggtcgacg cagccgggcg catccgcgcc
     1921 gcggtcaatc agatcaccca ggaagaccag cgtgtcggaa gatggatctc gtggcagcat
     1981 gtcgagcaag ttgaggagct gcgcacaacg accgtgaatg tcgccaacga cgaaggtttt
     2041 cattcagaaa ggtcccccga ttcctctcgg tggcccttga tcttag
//
LOCUS       DATCGC010002057         1417 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_32011, whole genome shotgun sequence.
ACCESSION   DATCGC010002057 DATCGC010000000
VERSION     DATCGC010002057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1417)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1417)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1417
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32011"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(16..>1417)
                     /locus_tag="VIJ87_19540"
     CDS             complement(16..>1417)
                     /locus_tag="VIJ87_19540"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEY5446611.1"
                     /translation="VAARADDIDAYVQTEMAEQHIPGLSLCVVRDGHIIKDQTYGLAN
                     VELNVPATSDTEFAIASMTKSVTASAIMLLVQDGKISLDDPISKYFDGLPESWQAITV
                     RHLLSHTSGIKDHFHDYPFFPIANLDRKLEYTDAQYLKALIDGGLNFKPGAQWAYSST
                     GFTLLGMIIKKVTGKPYAEFFRERIFAPLGMTKTHVISLAGIIPNRAAGYRWLDGAMR
                     NGDYTGQTFSEGADVSLLTTAADLAKWHIALSSEGIWKKSSLELMWTPAKLANGEEAV
                     PFPGGESGLGWGLGIYNGYPRIGHGGSFITGFVSFMGRIPDKRLIVIVLTNQHSANPL
                     RVAFGVVGFYDADLLAPHRMKVQADAQPELTAKVKAFVAALFSGGASGDPTQFVTGGL
                     GHHLPPVPKTPAGQTVPVSDVSFIASANVSNRRIVRYGARVTHMSYYKAIFDGHPVYL
                     TLYFTSDGQIADYSGY"
BASE COUNT          331 a          377 c          385 g          324 t
ORIGIN      
        1 aaggttaaga gcttactaat atcccgaata atccgcgatt tggccgtcac tcgtgaagta
       61 gagggttaag tagacggggt gaccgtcgaa gatggccttg tagtaactca tatgcgtgac
      121 tcttgcgccg tagcgcacga ttcgtcgatt gctgacgttc gcactggcaa tgaatgagac
      181 gtccgaaacc ggaactgttt gtccggcagg cgttttggga acgggcggaa gatgatggcc
      241 cagaccgcca gtcacgaatt gagtagggtc accgcttgcg cccccgctga acagagcagc
      301 aacaaacgcc ttcactttcg cagtcagctc cggctgcgca tccgcttgga ccttcatgcg
      361 atgtggcgcc agcaaatccg catcgtagaa accaaccact ccgaaggcga ctcgcaatgg
      421 attcgcggag tgttgattcg tcaacacgat cacaatcagt cgtttatccg ggattcttcc
      481 catgaacgac acgaatccgg tgataaagct gccaccgtgg ccgatccgtg gatacccgtt
      541 atagattcct aagccccaac caagaccaga ctcgcctccg ggaaacggga ccgcttcttc
      601 cccattagcg agcttggccg gtgtccacat taactcgaga ctcgacttct tccagatacc
      661 ttccgacgac agagcgatgt gccatttggc caggtccgcc gcggtggtaa gcaaactgac
      721 gtcagcgccc tcgctaaagg tttgtccagt gtaatcgccg ttacgcattg ccccatcgag
      781 ccagcgataa ccagcggcac ggtttggaat gattccagcg aggctaatga cgtgggtttt
      841 cgtcatgccg agtggagcaa agatgcgctc gcgaaaaaac tctgcgtagg gcttgccggt
      901 taccttctta atgatcatcc ccagcaaagt aaaaccagta ctgctgtagg cccactgagc
      961 acctggctta aagttaagtc cgccgtcgat cagtgctttc agatattgcg cgtcggtgta
     1021 ttcaagtttg cgatcgagat tggcaatcgg aaagaaagga tagtcatgaa agtgatcctt
     1081 gataccggaa gtgtgagaca acaggtgccg cactgtgatg gcttgccaac tttccgggag
     1141 accgtcgaag tatttactga tcggatcgtc aagactgatc ttcccgtcct gcaccagaag
     1201 cattatggcg ctggccgtta ctgactttgt cattgaggca atcgcgaact cggtgtcgga
     1261 ggttgcggga acgtttagtt caacattcgc cagtccatag gtttggtcct tgatgatgtg
     1321 gccgtcgcga acaacgcaca gagatagacc ggggatgtgc tgctcagcca tctctgtttg
     1381 gacgtaggca tcaatgtcat cggctcgtgc cgcaacg
//
LOCUS       DATCGC010002058         1820 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_160550, whole genome shotgun sequence.
ACCESSION   DATCGC010002058 DATCGC010000000
VERSION     DATCGC010002058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1820)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1820)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1820
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_160550"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..414
                     /locus_tag="VIJ87_19545"
     CDS             <1..414
                     /locus_tag="VIJ87_19545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446612.1"
                     /translation="LSLVLLMTEVTKHSVTPQQLLRSAAALWVSNFLVFASWYWRLDG
                     GGPHQRAQTAGHTDGAFLFPQMTMHPEAKIAAGEEEWEPNFVDYLFLAFNTSTAFSPT
                     DVPVLSRWAKILMMIQAMISLVVIALLAGRAVNIL"
     gene            462..980
                     /locus_tag="VIJ87_19550"
     CDS             462..980
                     /locus_tag="VIJ87_19550"
                     /inference="COORDINATES: protein motif:HMM:NF017015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY5446613.1"
                     /translation="MDLTDIKHLFNYTEWANDLAMDAAGKLTDEHLRREVGISHKSIF
                     GTLLHMAGAEWIWLERWHGRSPRKDEAWSQWRPESCDDLATLEQRWSKIVETRSKYVS
                     ELDESRLTGELAFKLLSGDPSSMRLCDQMQHVANHATMHRGQVVGMIRQLGIDPPATD
                     LLFYVRREISPR"
     gene            complement(1262..>1820)
                     /locus_tag="VIJ87_19555"
     CDS             complement(1262..>1820)
                     /locus_tag="VIJ87_19555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446614.1"
                     /translation="IHDVDETPARGSVGRPRASDTIPLGGLSIGIFDLLFAFIFYGLI
                     LGVPPLRIFQSVAAGVLGRPRATEGGVRTFLLGILLHFVVATCIATVYYLATQVLPVL
                     IRHPVVSGLTYGVIAYFGMKYIVVPLSAIGQMGRLPRLPILVTEVIGHAVLVGLPVAL
                     LARRSASVNGNTPNSATAEPNLGSI"
BASE COUNT          469 a          464 c          456 g          431 t
ORIGIN      
        1 ctttcacttg tactgcttat gaccgaagta accaaacact cggtgacacc tcagcaactg
       61 ctgcgttctg ccgcagccct ctgggtttca aactttctcg tctttgcctc ttggtactgg
      121 cgtctagatg ggggtggacc acaccaacga gctcagactg caggtcacac tgacggtgcg
      181 ttcttatttc cacaaatgac catgcaccct gaggcaaaaa ttgccgccgg agaagaagag
      241 tgggaaccaa actttgtcga ctatcttttc ctggctttca acaccagcac cgccttctca
      301 ccgactgacg taccagtgtt gtcgcgttgg gcaaagattt taatgatgat tcaagcaatg
      361 atttctctag ttgtcattgc cttactcgca ggtcgtgcag tgaacatcct ttgattgatt
      421 tgatatgagt cttaacgaac taaaccatag gtgagacaac catggacctg acagacatca
      481 aacacctctt taattacact gagtgggcca acgacttggc gatggacgct gcgggcaaac
      541 taactgacga acatctgcgc cgcgaagttg gtattagtca caaatcgatc ttcggtacgt
      601 tgctgcatat ggcgggcgcg gaatggatct ggttagaacg ctggcatgga aggtctcctc
      661 ggaaagatga ggcatggtca caatggaggc cagaatcatg cgatgacctc gcaacgttag
      721 aacagcgctg gagcaagatc gtcgagacgc gttcgaaata tgtttcagag ttggacgagt
      781 cgagactgac cggtgaacta gcatttaagc ttctcagcgg cgatccgagc tcaatgcgtt
      841 tgtgcgatca aatgcagcat gtcgcaaatc acgcgaccat gcatcgcggt caggttgtcg
      901 gaatgatccg ccagcttggg atcgatccgc cagcaactga tttattattc tatgtacggc
      961 gcgaaatatc gccgaggtaa tggtcgatac gctttagagc ccggtgcaag actctctcat
     1021 tctccccaag cttcagcttg gtgttacagt aagactcaat tttgggaacc gttttaacgg
     1081 tttacgagtt ttgagccaat caagattcct attggcgttc ggattcattc gcgcacgggg
     1141 caaaccgttg aaacggttcc tgagtaacga gcgcgcactc taaccccaag ctgaagcttg
     1201 gggagaatga gagttttgta agtggcgcct tcgcttgttg atgaacccaa tgtagctgca
     1261 cctagatcga accaaggtta ggttctgcag ttgcggaatt tggagtgttc ccattcaccg
     1321 aggccgatcg ccgagccaat aacgcaacgg gtaatcccac tagaacggcg tgaccaatta
     1381 cttcggtcac caagattggt agtcgaggta gtcgccccat ctgcccaatt gccgatagcg
     1441 gcaccacgat gtacttcatc ccaaaatagg caatcactcc ataggtcaat ccgctcacaa
     1501 ctggatggcg aatcaaaact ggcaacactt gagtcgccag gtagtagacc gtcgctatac
     1561 atgttgcaac gacgaagtga aggagaatgc ccagcagaaa agtccgcacg ccaccttcag
     1621 tcgccctcgg cctgccaagc actccagcag cgactgattg aaagattcgc agtggtggta
     1681 cgcctaatat caacccgtaa aaaatgaatg cgaacaggag atcaaatatt ccgattgata
     1741 accctccaag aggaatcgtg tcggaagcac gtggacgtcc taccgaacct ctcgcaggcg
     1801 tttcgtcgac atcatgtatg
//
LOCUS       DATCGC010002059         1966 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_229897, whole genome shotgun sequence.
ACCESSION   DATCGC010002059 DATCGC010000000
VERSION     DATCGC010002059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1966)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1966)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1966
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_229897"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            340..>1966
                     /locus_tag="VIJ87_19560"
     CDS             340..>1966
                     /locus_tag="VIJ87_19560"
                     /inference="COORDINATES: protein motif:HMM:NF015131.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HEY5446615.1"
                     /translation="MDKLNPASVFLNLSKRERRLTLIAFTFVAAAVLMTCIVVPGSAS
                     SDITIARVRNPPLDTDLISLPGDLRAVAVPRPSNLGDFVRDEVTARALGKALFWDMQV
                     GSDGIQACASCHFRAGADPRSKNQLSPGLKHLPSADTTFSNGKGPNYQLTASDFPLTR
                     LLNPGLRGGLNPVTDSNDVVSSQGIHFPLGQDPLGFVVNASNTRRVEPRNTPSVINAV
                     FNHRQFWDGRAENIFNGVNHLGQRDPDAKLFRADDLKTPVEVRVELSNASLASQAVAP
                     IVSDLEMATPGRSRLDVARELAKSKRDDGKRVTKVRPLGLQQVSTTDSVLGSMSRWPQ
                     KGLSLARYDQLIKLAFQEKWWKSQKLIRVNADGSKSVIAKNDGACEDSTCAENEYSLL
                     QYNFSLFFGIAIQLYEATLVSDDTPWDRFRREHPSATDPALNPWTNQSPTYISRLALF
                     GAHLFNDRTRGPQNVRCSNCHEQNELTDASTRRITTATNGPVRNRDGNIIDKGFNNIG
                     VRPTDDDPGVGASDAFGPLSQASRRFPQGFSGAI"
BASE COUNT          484 a          506 c          499 g          477 t
ORIGIN      
        1 tatgaagcac agattttttc cactatgaaa tgagcggcca aatctgacgc ttccgctccg
       61 aaagtgcgga tgccgataag gctgtcaggc gcgttcattt tcgaaaggaa aaaaccaatg
      121 caaaagactc cacaccttgt agcctctttg ggagtagggg gtactcctgg tccagaccct
      181 cctgaagttg gcggcttttg agtgccttgc gcaagcccca ggaataatta aaacgagccg
      241 aatcatgaga gtcgatggtt gggtttccat taaatccgga aaccgatccg atccttcggc
      301 aatcaacttt gagatcgagc cacttcgcgg aggtcaatca tggacaaact gaaccccgct
      361 tctgtgttcc tcaatttgag taaacgtgag cgacgcttaa cgctcatcgc ttttacattt
      421 gtcgctgctg ccgttttgat gacgtgcatt gttgtaccgg gtagtgcgtc gtcagatata
      481 acgattgccc gcgtacgaaa cccacctttg gataccgacc tcataagctt gccgggtgat
      541 ttgcgagcgg ttgctgtgcc gaggccgtcg aaccttggtg atttcgtaag agacgaggtt
      601 acggcgcgcg cgcttggtaa agcactcttt tgggacatgc aagttgggag cgacggcatt
      661 caggcttgcg caagctgtca ctttcgagcc ggtgctgatc ctcgatctaa aaatcaactg
      721 agcccaggct tgaagcacct gccgtcagcg gatactacct tctcgaacgg taaaggtccg
      781 aactatcaac ttacggcctc agattttccg ctcacccgtc tactcaatcc gggtttacgt
      841 ggtggactta atccagtgac cgatagcaac gatgtagtat cgtcgcaagg cattcatttt
      901 ccgcttggtc aagatccgct tggcttcgtt gtaaacgcgt cgaacacgcg gcgtgttgaa
      961 ccgcgcaaca ctccatcagt gattaatgct gtattcaacc atcgacaatt ttgggacggt
     1021 cgcgctgaga acatttttaa tggcgtcaat cacctgggcc aacgagatcc ggatgcgaag
     1081 ctgtttcgcg cagatgatct taagactcca gtagaggtgc gcgttgagct atccaatgca
     1141 agcttagcgt cacaagctgt ggccccgatc gtaagtgatc tcgagatggc aactcccgga
     1201 cggagtcggc tcgacgtggc ccgtgaacta gccaaatcaa agcgtgacga tggaaagaga
     1261 gttactaaag tgcgaccgct tggtctgcag caggtttcaa cgactgatag cgtactcggt
     1321 tcaatgagcc gttggcccca gaaaggactt tccttagctc gttacgatca actcatcaag
     1381 ttggctttcc aagagaagtg gtggaaatcc cagaaactga tacgagtaaa tgcggatgga
     1441 tcgaaatcag taattgcaaa aaatgacggc gcgtgcgaag acagtacctg tgcagaaaac
     1501 gaatactcgc ttctgcaata taatttctcg ctcttctttg gaattgcgat tcaactttat
     1561 gaagcgacat tagtctctga tgatactccc tgggatcgct ttcgccggga acatccaagt
     1621 gcaaccgatc ctgcgttgaa cccttggacc aatcagtcgc cgacttacat tagccgactc
     1681 gcacttttcg gagcacacct cttcaacgat agaacacgcg gaccacagaa cgttcgttgt
     1741 tcgaattgcc acgagcagaa tgaactcacc gatgcttcca cccgccgtat tacgacggcc
     1801 actaacggac ctgttcgcaa tcgtgacggc aacatcatcg acaagggatt caacaatatt
     1861 ggagtccgac ctaccgatga cgaccctggc gtgggggcga gtgatgcgtt tgggccatta
     1921 tcacaagcgt cacgtcgttt tccgcaaggt ttttctgggg ccatca
//
LOCUS       DATCGC010002060         1572 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_229900, whole genome shotgun sequence.
ACCESSION   DATCGC010002060 DATCGC010000000
VERSION     DATCGC010002060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1572
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_229900"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1241)
                     /locus_tag="VIJ87_19565"
     CDS             complement(<1..1241)
                     /locus_tag="VIJ87_19565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020808074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HEY5446616.1"
                     /translation="MFRFQQEKTQLAPDFEAIRISLASPEKIRQWSHGEVTKPETINY
                     RTFKPERDGLFCARIFGPVADWECLCGKYKRMKHRGVICDKCGVEVTQAKVRRERLGH
                     IDLASPCSHVWFFKGLPSRIGHLLDIPLRELEKVLYFESYIVIDPGDVPGLKERELVT
                     DERYRELVRDYPAQFVAKMGAEAIKELLSMVQIEELATDLRVRMKEETSQQKKLKYSK
                     RLKVATSFLKSGNKPEWMILDVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNN
                     RLKKLMELRAPEVIVRNEKRMLQEAVDALFDNGRRGRVLRGVNNRPLKSLSGTLKGKQ
                     GRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKKMALELFKPFIYNQLEKQGHAAT
                     IKQAREMVERQEPVVWDILEEV"
     gene            complement(1378..>1572)
                     /locus_tag="VIJ87_19570"
     CDS             complement(1378..>1572)
                     /locus_tag="VIJ87_19570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446617.1"
                     /translation="SKIYEAIVKGEADFDPGLPESFNVLVRELQSLCLDVELINKKVA
                     GDGIAEEGVGEAIVTSAVEA"
BASE COUNT          365 a          445 c          378 g          384 t
ORIGIN      
        1 acttcttcga gaatgtccca aacgacaggc tcctgacgtt ccaccatctc gcgtgcctgt
       61 ttgatcgtgg cggcgtgtcc ctgtttctca agttggttgt agataaacgg cttgaagagt
      121 tcgagcgcca tcttcttcgg caatccacac tggtggagct tcagttctgg gccgacaaca
      181 ataactgatc gccctgagta gtcgacgcgc ttaccaagca agttctgacg gaaacggccc
      241 tgcttacctt tgagcgttcc gcttagcgac ttcaacggac gattgttgac gccacgaaga
      301 acacgaccgc gacgaccatt atcgaacaga gcgtcgacag cctcttgcag catgcgcttt
      361 tcgttgcgca cgatgacttc cggcgcacgc aactccatca acttcttcaa acggttgttg
      421 cggttgatga cgcgacgata caaatcgttc aaatctgacg tcgcaaaacg accgccgtcc
      481 aacggcacca ggggtcgcaa ctcgggtgga atgaccggga tcacatccag gatcatccac
      541 tcgggtttgt ttcccgactt caaaaagctg gtggcaacct tcaaccgctt cgaatatttg
      601 agcttcttct gctgcgacgt ctcttctttc atccgcacgc gcaggtcggt cgccagttct
      661 tcaatctgga ccatcgacaa gagttctttg atcgcttcgg cacccatctt ggcaacgaac
      721 tgcgccggat agtcacggac aagttcgcga tagcgttcgt cagtaaccaa ctcacgttct
      781 ttcaaccctg gcacgtcgcc tggatcaatc acaatgtagg attcgaagta gaggaccttt
      841 tcgagctcgc ggagtgggat gtcaagcaag tgaccgatgc ggctcggtaa tcctttgaag
      901 aaccagacat gcgaacacgg actggcaagg tcgatgtgac cgagtcgctc gcgtcgtact
      961 tttgcctggg taacttcgac accgcacttg tcgcagataa cgccgcggtg cttcattcgc
     1021 ttgtacttgc cgcacaaaca ttcccaatca gctaccggac caaagattcg cgcacagaaa
     1081 agcccatcgc gctctggttt aaacgtgcga tagttgatcg tttcgggttt ggtcacctca
     1141 ccatgcgacc attgccggat cttttccggt gacgcaagtg agatacggat agcttcaaag
     1201 tcgggagcta attgcgtctt ttcttgttga aatcgaaaca cttgattttc tccgttgttt
     1261 aatacatcca acaacaacat tttggtcttg ggctttaggc cttggtcttt gctccgccgg
     1321 cgggggttca ccgaagcagt gcaaaagacc taaggccaaa gtcataagac cgaatcttta
     1381 cgcttcaaca gcgctagtca cgatcgcctc accaacgccc tcttcagcaa taccatcgcc
     1441 ggcgaccttc ttattgatca attcgacgtc gagacacagc gactgcaatt cgcggacgag
     1501 cacgttgaac gactcaggca aacctggatc gaaatcagct tcacctttga cgattgcctc
     1561 atagatctta ga
//
LOCUS       DATCGC010002061         1053 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_160574, whole genome shotgun sequence.
ACCESSION   DATCGC010002061 DATCGC010000000
VERSION     DATCGC010002061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1053
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_160574"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            63..1025
                     /locus_tag="VIJ87_19575"
                     /pseudo
     CDS             63..1025
                     /locus_tag="VIJ87_19575"
                     /inference="COORDINATES: protein motif:HMM:NF027637.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent metalloprotease"
BASE COUNT          261 a          268 c          287 g          237 t
ORIGIN      
        1 cgggtacaaa cgaaagcgaa gcactcgatc agattctcag cgcggcgttt tctcgtggct
       61 tgatgtatct gactgatcag gatgcgcgac cagcaagcgc atcgagttct gtcgctcatc
      121 tttgggacaa tggtcgcaac gtcgtcgatg agcttggcaa cgtgatgaag gttcgtggtg
      181 ccgccctgcg tcgctttggt gagaacaaca ttcgcgaagg cgcgccgatg gcgacaatcg
      241 aagatgttct tgtaccgata tacatgtatc accgttatta agtggaggct gccgcgaaag
      301 tcattggtgg tcaggactac accttcagcc tgaaagggaa gggtgatcgc aatccgcaga
      361 tcgtggcccc ggaagaacag cgtcgcgcgc ttgtcgcagt gttagaaacg atcaaaccag
      421 aagcattgat tcttccagag tcgttgttga agttgattcc gccaagaccg gttggatatg
      481 gtcgaacgag ggaagatttt cgtattcgca cacaaccttc tttcgacgcg ctcgcacctg
      541 cggaagctct tgccgatcac gttagcaatt tccttttgaa ttccgaacgt gctgcgcgtt
      601 tggttcagtt tcacgctcgc gatacccgaa atccagggct ggttgaagtg atcgacaaga
      661 tcctcgcgtc aacctggaaa gctccagttg caaccggcta tgcaggagag attcaacaca
      721 cagtcgacat ggtaattctt agcgacctga tggccctggc atctgcggaa cgcgccccga
      781 accaggtacg tgcaattgct gaactgaaac tcgaacagct caaaggttgg ttaggcacgc
      841 aacgaacgct aaccgccgac gacaaccatc gagcatttct tttctacgca ggccaacaaa
      901 tcaaacgctt ccaggatgac ccgaagaaga tgaatctcac gcgcccccaa gatccaccgg
      961 acggtcaacc gatcggaatg gattggtggg gacgagcgga tttggaatgt gagtggcgaa
     1021 attagatcgg tcagtattcc atctaagtag ctt
//
LOCUS       DATCGC010002062         1277 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_494706, whole genome shotgun sequence.
ACCESSION   DATCGC010002062 DATCGC010000000
VERSION     DATCGC010002062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1277)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1277)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1277
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_494706"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..294)
                     /locus_tag="VIJ87_19580"
     CDS             complement(<1..294)
                     /locus_tag="VIJ87_19580"
                     /inference="COORDINATES: protein motif:HMM:NF015289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EutN/CcmL family microcompartment protein"
                     /protein_id="HEY5446618.1"
                     /translation="MRLSRLVWVADLLIIIARILGTVVATQKDERLSGKKLLIVRPIN
                     VDGSDTSGYVVAVDTVGAGFHERVLVVAGSSARLAQGLKDVPVDAAIVGVIDTV"
     gene            complement(263..544)
                     /gene="eutM"
                     /locus_tag="VIJ87_19585"
     CDS             complement(263..544)
                     /gene="eutM"
                     /locus_tag="VIJ87_19585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001183618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutM"
                     /protein_id="HEY5446619.1"
                     /translation="MQEALGMVETKGLVAMIEAADAMVKAANVTLIGYEKIGAGFVTA
                     IVRGDVAAVKAATDAGAAAARRVGELVSVHVIPRPHGSVDETLPIGLGS"
     gene            complement(942..>1277)
                     /locus_tag="VIJ87_19590"
     CDS             complement(942..>1277)
                     /locus_tag="VIJ87_19590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446620.1"
                     /translation="VAYGSDLWQAWDRLETLEHTAKIAILSRMLGGSKNLPADAVEKL
                     INVREKAGYLPEEARCQACGYLHETRLTCPTGDRPAPTTYSSNGDSKISLTREELVEL
                     LSQAVMSKD"
BASE COUNT          306 a          379 c          288 g          304 t
ORIGIN      
        1 aaccgtatca atgacgccga caatcgccgc atcaacggga acatccttca gaccctgcgc
       61 cagtcgtgcg cttgatcctg ccactaccaa aacacgttcg tggaaacctg cgcccactgt
      121 atccactgcg acgacatatc ctgaggtgtc actaccgtcg acgttgatgg gacgtactat
      181 gagaagcttc tttccgctta accgttcgtc tttttgcgtg gcgacgacgg ttccgaggat
      241 gcgcgcaatg attatgagta aatcagctac ccaaaccaat cgggagagtc tcatcgacac
      301 tgccatgcgg acgaggaatc acgtggacgc taaccaactc accaacgcga cgcgcagctg
      361 ccgcaccggc atcagtcgcc gccttcacgg ccgcgacatc accacgcacg atcgcggtta
      421 caaaacccgc gccgatcttt tcgtagccta ttagcgtcac gtttgctgcc ttaaccatgg
      481 catcggccgc ttcaatcatc gcgacgaggc cttttgtttc aaccattccg agtgcttctt
      541 gcattcagat gctcctgtat tcgtgaatcg taaatagtga atagtaaatc gtgaatcgag
      601 gaaccagact ctagcggctc ccgagaagtc agtcaaactg cttaatgtcc gatatgcttc
      661 agcttgtcgt gactcagagc tgattgcttt aaaacttaat tgcttacctt tattccgatc
      721 ttatgtattt catccgcggc gacttcttgc acagttcacg acaagctaaa aaagagcctc
      781 ttgcaaaagt caacctagtg gcgattgaag tcagtaccga aacgcggtag cgtcggctct
      841 ttggatccgc aagaactagc cgacgctacc gcgtttcggt actgactcca tcgccactag
      901 attccgcgac ttttgcacca gggtctaaag catatcggac attaatcctt ggacatcacg
      961 gcctggctca acaattccac caactcttca cgcgtcaacg aaatcttgct gtcgccgttt
     1021 gaagaatacg tagtaggcgc tggacgatct cctgttggac aagtcaagcg tgtctcatgc
     1081 aaatacccac atgcctggca acgcgcctct tcgggcaagt atccagcctt ctcgcgcacg
     1141 ttgatcaact tctcaaccgc atctgccggt agattctttg agccgcccaa catgcgcgaa
     1201 aggatcgcaa tcttcgccgt gtgttcgagc gtctcgagtc gatcccaagc ctgccaaaga
     1261 tcacttccat aagcgac
//
LOCUS       DATCGC010002063         1213 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_229932, whole genome shotgun sequence.
ACCESSION   DATCGC010002063 DATCGC010000000
VERSION     DATCGC010002063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1213)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1213)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1213
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_229932"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..623)
                     /locus_tag="VIJ87_19595"
     CDS             complement(<1..623)
                     /locus_tag="VIJ87_19595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446621.1"
                     /translation="MLRDPLSSTLASLPECFHSARAELLEMLRRDGILHRSPNQPVLS
                     RDGTSARWMLDSLAVTLSPRGGQLAGACITQLLKRFDGRQIATYGLTGVPILQSCLLQ
                     DNRYRGLLVRKERKQHGSLKLIEGFIDNSEPVILIDDSVSSGLSMEEATERLEEAGLR
                     VEGGVCLVRFGWYGGYARLQDRGYHMEAVYDIWDDFISQMEDEEPLLA"
     gene            complement(629..>1213)
                     /locus_tag="VIJ87_19600"
     CDS             complement(629..>1213)
                     /locus_tag="VIJ87_19600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446622.1"
                     /translation="PGEEFEDYQAQCEVISKIHHLQAPWAIAIARADRGSPMYAEPES
                     QSVTKLVPSPCYNYLFPKDRFNLQRVSYYFEHEMNNTLKESQYDEIFEAVGIWQQRWQ
                     ETPRPYLRYRKALATIVIEDGRNGRPREITFSDHHANLYEFCADAHSRKEIAARFDDA
                     SWVDGALEEFVERELMIYLDNQYLSLALPENPYF"
BASE COUNT          315 a          312 c          303 g          283 t
ORIGIN      
        1 gctaagagcg gctcttcatc ttccatttga gaaatgaaat cgtcccagat gtcgtacacg
       61 gcttccatgt gatagccgcg gtcctgcagc cgcgcgtatc cgccatacca cccgaatcgc
      121 accaggcaga cgccaccctc cacgcgcaag cccgcttctt ctaatcgttc tgtagcttct
      181 tccatcgaca atccggaact gaccgaatca tcgatcagaa tcacgggctc gctattgtcg
      241 ataaaaccct caatgagttt tagagagcca tgttgcttac gctcttttcg aactaacaaa
      301 ccacgataac gattgtcttg aagcaggcac gattgaagta tgggaacgcc ggttaagcca
      361 tacgtagcga tttgacgacc atcgaagcgt ttaagaagtt gcgttataca agctcctgca
      421 agttgaccgc ctctgggcga gagtgtgacg gctaaagaat caagcatcca gcgcgccgag
      481 gtgccgtcgc gagagagtac tggctgattt ggcgagcgat gaagaatgcc atcacgacga
      541 agcatctcaa gcagttctgc gcgggccgag tgaaaacact caggcagaga tgcaagcgtg
      601 ctcgaaagag gatcgcgtaa catcgatatc aaaagtaagg attttccggc agcgcgagac
      661 taaggtactg attgtcgaga tagatcatta gttcgcgttc aacaaactct tccaacgctc
      721 catcaaccca tgaagcatcg tcaaatcggg ccgcgatttc tttcctgcta tgagcatccg
      781 cgcaaaactc atagaggttt gcatgatgat cagaaaaagt tatttcgcgg ggccgaccgt
      841 tgcgtccatc ttcaatcacg atcgtagcca atgctttgcg ataacgaaga tagggcctcg
      901 gggtttcttg ccaacgttgc tgccaaatgc cgaccgcttc gaaaatctcg tcatactgcg
      961 attccttgag cgtgttattc atctcatgtt caaagtagta ggaaacgcgt tgcaggttga
     1021 agcgatcttt aggaaacagg tagttgtaac aaggcgacgg aactagtttc gtaactgatt
     1081 gagactcggg ctcagcgtac attggtgaac cgcgatctgc ccgggctatc gcgatggccc
     1141 agggagcttg caaatgatga atcttcgaaa tgacttcaca ctgagcctgg taatcttcaa
     1201 actcctcgcc ggg
//
LOCUS       DATCGC010002064         1179 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_426729, whole genome shotgun sequence.
ACCESSION   DATCGC010002064 DATCGC010000000
VERSION     DATCGC010002064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1179)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1179)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1179
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_426729"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..191)
                     /locus_tag="VIJ87_19605"
     CDS             complement(<1..191)
                     /locus_tag="VIJ87_19605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446623.1"
                     /translation="MRPNELRDRNQPADGSFSKRSSEGRVASYNTFGMSEDPENCDRP
                     AASKKDEPMSGRSYRFTTKG"
     gene            205..>1179
                     /locus_tag="VIJ87_19610"
     CDS             205..>1179
                     /locus_tag="VIJ87_19610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446624.1"
                     /translation="MYGPTRPGLLCSVDVTATAKHLSRTISLQLGALAIPTLRAGVQI
                     EHGGISLTSSEPFPVWLHWGALKVQGDVPLGRREDIPIHSSLAPVNGQSYADMTVRED
                     RWLNLWIGQDALFAPTASGTASLPSNVYPHRDPSPGLHMDVWPYELLKKYALKYGVYY
                     SRDSEGLLYRNGTVRSGLGMTVEEVFRSRAVGEHHGLVFIDTLDALPPHGDNLGTILI
                     KTDYAEGIFIVNAHIQFRPRGSGKSVSALSPPDEGSTSVATRIPVTLSGIHLNGILST
                     AGDVSYEGRPRVFGALLVEGHISPSLPSYTPIEVWYDSDFRNGMFRGLP"
BASE COUNT          249 a          320 c          307 g          303 t
ORIGIN      
        1 cctttcgttg tgaagcgata cgatcttccc gacattggtt catctttctt tgacgcagcc
       61 ggtcgatcgc aattctccgg gtcttctgac atgccgaatg tgttgtacga cgcgacgcgt
      121 ccttcggatg accgcttact aaacgatcca tctgccggct ggtttcgatc cctcagttcg
      181 ttaggccgca tcgagagagt gaaagtgtat ggaccgacac gacctggact gctctgttca
      241 gtcgatgtca cagcgactgc gaaacatctg agtcggacaa tctcgctgca actcggcgcc
      301 ttagccatcc cgactctgcg ggcaggggtg caaatagagc atggtggaat ttccctcaca
      361 agcagcgagc cgtttcctgt ctggctgcat tggggtgctc tcaaggttca aggcgacgtg
      421 ccgctcggtc gacgtgaaga cattcctatt cattcatcgc tggcccctgt taacggacaa
      481 tcttatgcgg acatgactgt acgcgaagat cgttggctta acttgtggat cggccaagac
      541 gcgttatttg cgccgaccgc atcaggaaca gcctctctgc cttcaaatgt ctacccacat
      601 cgcgatccat ctcctggatt acatatggat gtgtggccat acgagctctt aaaaaagtat
      661 gccctcaagt acggtgtcta ctattctcga gattcggagg ggttgctcta tcgtaacggc
      721 acagttcggt cagggctggg aatgacggta gaagaggtct ttcgatcccg cgcagtcggt
      781 gaacatcacg gcctggtctt tattgacacg ctggatgcgc tgccgcctca tggtgataac
      841 ctcggcacca tactcattaa aaccgattat gctgagggaa tcttcatcgt gaatgcacac
      901 attcaattca gaccgagagg gtcgggaaag tctgtctcgg cgctcagccc tcccgacgaa
      961 gggtcaacct cggtggccac gcgtatacct gttactctat cgggaattca tctcaacgga
     1021 atcctttcga cagcaggaga tgtttcgtat gaaggacgcc cgcgtgtctt cggagcgctt
     1081 ctcgtcgaag ggcatatcag tccgtcttta ccttcctata ctcccattga agtgtggtat
     1141 gactcggact ttcgaaatgg aatgttccgt ggtcttccc
//
LOCUS       DATCGC010002065         1023 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_229945, whole genome shotgun sequence.
ACCESSION   DATCGC010002065 DATCGC010000000
VERSION     DATCGC010002065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1023
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_229945"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            289..744
                     /locus_tag="VIJ87_19615"
     CDS             289..744
                     /locus_tag="VIJ87_19615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446625.1"
                     /translation="MEHRIGMRLVFCALLLSVCLAATAYGQQRKVFVVDTGMVTLGPN
                     QILRISGDGVDQDDVITLRFRRTQYTQGPCNGGVCKHSISFQITSPPTTLTQGETASI
                     DIPNNAFGVRAAVLSNSTDLRVTAQIIDQTTGAIVAIWVPQGSPVVSKE"
     gene            798..>1023
                     /locus_tag="VIJ87_19620"
     CDS             798..>1023
                     /locus_tag="VIJ87_19620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446626.1"
                     /translation="MNAWLIAAVIVVIVLLGWWIMGLINGPAEREFEVWVKTCLEKQA
                     IKRGGSVTMSGRTALLTTPYKDISIEVSKAL"
BASE COUNT          258 a          275 c          242 g          248 t
ORIGIN      
        1 cctaagagcg ctacctaaaa gactcgctta gatacgcgcg tcttttaagt cttttaccat
       61 tcgaatctac attgaagccg cttcttctcg gctgagcttt cctactgtat ttgagttctc
      121 cactgctacc agcgaatcga ttttcatcgg tgatggcaca taccaacagc gccacactgg
      181 gacccgaatc cagcgcttct tttcattcct aacagcctgt tctgaatgat agaatccgcc
      241 gcctccgcct taactacaat cacgaagata ggtcagcaag gagaacacat ggagcatcga
      301 atcggaatgc gactcgtatt ttgtgcctta cttttatctg tctgtctcgc ggcaacggct
      361 tacggacaac agcgaaaggt tttcgtggtt gatacgggca tggtaacgct cggtcccaat
      421 cagattcttc gcatctcggg agatggcgtt gatcaggatg atgtcatcac cctgcgtttc
      481 aggcgcactc aatacacaca gggtccatgc aacggcggag tctgcaaaca ctcaatctca
      541 ttccaaatca cgtcgccccc gacaaccttg actcaaggtg agactgcgtc aatagacatc
      601 ccaaacaatg cattcggtgt tcgggccgca gtgttgagca acagtacaga cctccgggtc
      661 actgcgcaga taattgacca aactacaggc gccatcgttg cgatctgggt accacagggc
      721 agtccggttg tcagcaaaga ataagactcg actcaacact ttttctggcc ggttacaaat
      781 ttaaataaga tctcgccatg aacgcttggc tgatagcagc tgtaatagtc gtgatcgtcc
      841 ttctcggctg gtggatcatg ggtcttatca acggacccgc tgaacgagag ttcgaagtct
      901 gggtgaagac gtgcctggag aaacaggcaa ttaaacgcgg cggtagcgtc acgatgtccg
      961 gtcggacagc actgctaacc actccctaca aagacatcag tattgaggtt tccaaagccc
     1021 tgg
//
LOCUS       DATCGC010002066         1097 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_229960, whole genome shotgun sequence.
ACCESSION   DATCGC010002066 DATCGC010000000
VERSION     DATCGC010002066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1097
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_229960"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(42..602)
                     /locus_tag="VIJ87_19625"
     CDS             complement(42..602)
                     /locus_tag="VIJ87_19625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446627.1"
                     /translation="MPPRKKKQEFIRNTRYVPIGMRLGSGRRIDLQPRGMRGDTAPVS
                     EDEMNDEVFLGNLDVLFEVISDTDAKDVIKKQTTNQQKVHPALHHLRNERGEQYEKGV
                     VVQEQEEAHGYNVGAIDERGMITRFKAPGTSDYDLPEIPSYVPPEEHADWLARNSTQI
                     EGPEAGLGGLRVVKEENPNPPTSGDK"
     gene            complement(750..>1097)
                     /locus_tag="VIJ87_19630"
     CDS             complement(750..>1097)
                     /locus_tag="VIJ87_19630"
                     /inference="COORDINATES: protein motif:HMM:NF042927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97-fold major capsid protein"
                     /protein_id="HEY5446628.1"
                     /translation="IRDLYTWDINVTGFRFKDEVFAGGKITTFGEFQIQRSIIVPQGE
                     LFLTADPEFVGVMPVMYSLDVEENHQVEQFYKGWVMDELIGMLVLNARGLSRILKAGS
                     VPFTPTRADLGGY"
BASE COUNT          247 a          297 c          246 g          307 t
ORIGIN      
        1 cctaagagca tcgcctgtta cccaagggtc tggcatgata gttatttgtc tcctgatgtg
       61 ggtgggtttg ggttttcttc ttttactact cgtaggccac ctagtccagc ctcggggcct
      121 tctatttggg tagagtttcg cgctagccaa tccgcatgtt cttctggcgg gacatagctg
      181 ggaatttctg gaagatcata gtcactagta cccggagcct tgaagcgagt aatcatcccc
      241 cgctcatcaa ttgcgccaac attgtaacca tgtgcttcct cctgctcctg aactacaacc
      301 cccttttcgt actgctctcc ccgttcgttt cttaggtgat ggagcgccgg atgaaccttt
      361 tgctgattcg tagtctgctt tttgattacg tccttagcat ccgtatccga aataacttca
      421 aagagtacat ctaggtttcc caagaatact tcgtcattca tttcatcctc ggagactggt
      481 gccgtatcac cccgcatacc tcgcggctgt aggtcgatac gacgacccga ccccaaacgc
      541 atccctattg gaacatatcg ggtgttccta ataaactctt gcttcttctt acgtggtggc
      601 atattttcct ctagtcgtta tcacacaaga ctgtcctacg ttcattacac cagggagggt
      661 tctcttttgt aaggtaatca accctgctag acaacaagaa aggcccgcat ttcagcgggc
      721 ctctcaagat tgcctctctg gctaaaggct tagtatccgc ctaggtctgc cctagttgga
      781 gtaaatggta ccgaaccagc ctttaggatt cgtgatagac cgcgtgcgtt tagcacaagc
      841 atgccgatca attcgtccat tacccatccc ttgtagaact gctctacctg atggttttcc
      901 tcaacgtcca gtgagtacat gaccggcata acgccgacga actcagggtc agcggtcaag
      961 aatagctcgc cctgtgggac gataattgag cgctgaatct ggaactcacc gaatgtagtg
     1021 atcttaccac cggcaaacac ttcatccttg aagcggaaac cagtgacgtt gatatcccag
     1081 gtgtagaggt cacgaat
//
LOCUS       DATCGC010002067         2257 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_365479, whole genome shotgun sequence.
ACCESSION   DATCGC010002067 DATCGC010000000
VERSION     DATCGC010002067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2257)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2257)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2257
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_365479"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..205
                     /locus_tag="VIJ87_19635"
     CDS             <1..205
                     /locus_tag="VIJ87_19635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446629.1"
                     /translation="FVIVVTSLHRDFLPSSWGMYQPTVWDWSMFIGTIGFFFTLLFLF
                     IRFLPMISIFEMRTILPEAEVDE"
     gene            272..913
                     /locus_tag="VIJ87_19640"
     CDS             272..913
                     /locus_tag="VIJ87_19640"
                     /inference="COORDINATES: protein motif:HMM:NF023249.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3341 domain-containing protein"
                     /protein_id="HEY5446630.1"
                     /translation="MADDRDKTRSGNGHGQGDDVTPSPRHPATASHFHHRHAHPLYGV
                     MAEFEGPNELIDAARQTYEAGYRRINGYSPYPIEELSEAIGFTHSRLPLIVFIGGLLG
                     GIGGFLMQYWIEVIDYPINVGGKPYNSWPAFIPITFECTVLVAAFSAVLGMLVLNKLP
                     QPYHPVFNAPNFALATRDRFFLVVEASDAKYDHDTVTELLKSFNAQEVSDVEI"
     gene            978..1676
                     /locus_tag="VIJ87_19645"
     CDS             978..1676
                     /locus_tag="VIJ87_19645"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEY5446631.1"
                     /translation="MSVSNNKSEIFNLKSAMLCLLCVLSISVSSCRRDMQDQPKMKPF
                     RGTSFFGDGLSARPPVEGTVARGYLRTDTALYTGKKNKTVTSVSTTPAPVATGQVAAA
                     PSGQNAYPDDVDTFPFPITEETVLRGQQRFDIFCSVCHGKTGYGDGMIVRRGFRRAAS
                     FHDDRLRTAPVGHFFDAITNGWGAMPSYAPQIPVQDRWAIIAYIRALQASQNIKPAAA
                     SASPTPAPAAGGHR"
     gene            1673..>2257
                     /locus_tag="VIJ87_19650"
     CDS             1673..>2257
                     /locus_tag="VIJ87_19650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446632.1"
                     /translation="MIQSFNPPNLSRVQTRALIVGVVGFVVLLVSAFFDRKQFFQAYI
                     VGFTFWSGIAVGSLALLMLQHLTGGGWGLVIRRILEASTRTLPLVVVLFIPIIIGAHS
                     LYEWTDQAVLEAQPIVKFKTPYLNLPFFTIRAAVFFGIWLILAFFLNKWSLQQDRTGD
                     RVYAKNMRVLSGPGMVLLIFSVTFAAIDWFMSLEP"
BASE COUNT          472 a          561 c          626 g          598 t
ORIGIN      
        1 cttcgtcatc gtcgtcacga gcctgcaccg cgattttctg ccgtcgtcct ggggcatgta
       61 ccagccgacg gtgtgggact ggtcgatgtt tatcggcacg atcggattct tctttacgct
      121 gctgttcctg ttcattcgct tcctgccaat gatttccatt tttgagatgc gaacgattct
      181 tccggaggcg gaagtggacg agtagaacga cggggagtgg gcgacggagc tgttgctcca
      241 ggttcgtaga aataggtgag tgagatagaa agtggcagac gatagagaca aaacaagatc
      301 aggcaacgga catggccagg gtgatgatgt caccccgtcg ccgcgtcacc ccgccactgc
      361 gtctcatttc catcaccgac acgctcaccc actgtacgga gttatggcgg aatttgaggg
      421 accgaatgag ttgatagatg cagctcgcca gacttatgaa gcagggtatc gacgtatcaa
      481 cggttattcg ccttatccaa ttgaagagtt gtctgaagcg attgggttta cgcatagcag
      541 gctgccactg atcgttttta ttggcggact gttgggtggc attggcggct tcctgatgca
      601 gtactggatc gaagtgatcg actatccgat taacgtcggt gggaagccct acaacagttg
      661 gcctgcgttt attccgataa cttttgaatg cactgtactg gttgccgcgt tctcagcggt
      721 gttgggaatg ctggtcttga acaagctgcc gcagccttat cacccggtgt tcaatgcgcc
      781 gaatttcgcg ttagccactc gtgatcgatt tttcctcgtg gttgaggcaa gtgatgcaaa
      841 gtatgaccac gacacggtga ccgagttgtt gaagagtttc aatgcgcagg aagtcagtga
      901 tgttgagatc tgaggagttg accgggaatt gcagattgcc ggttgcagtc ttggtattcg
      961 agattcagag ataacgtatg tcagttagca acaacaaatc tgaaatcttc aatctgaaat
     1021 ctgcaatgtt gtgcttgcta tgcgtgcttt ccatatccgt atcttcctgc cgtcgtgaca
     1081 tgcaggacca gccaaagatg aagccgttcc gtggtacgag tttctttggc gatggtcttt
     1141 ccgcccgccc gccggttgaa gggacagtgg cgcgtggtta tctccgtact gacacggctc
     1201 tgtacacagg caagaagaac aagacagtta ccagtgtttc gactacacct gcgccagtcg
     1261 caacaggaca agttgctgcc gcgccgagtg gacagaacgc ataccctgat gacgtcgaca
     1321 ccttcccttt tccaattact gaagagactg tgctccgtgg acaacaacgc ttcgatatct
     1381 tctgttccgt ttgtcacggc aagaccggat acggcgacgg catgattgtt cgtcgcgggt
     1441 ttaggcgagc agcgtcgttt catgacgatc gcttgcgaac tgcgccagtt ggtcacttct
     1501 tcgacgcgat tacaaatggc tggggtgcaa tgccttcata cgcaccgcag atacctgtgc
     1561 aggatcgttg ggcgatcatc gcctacatcc gtgcgcttca ggccagtcag aacatcaagc
     1621 cggcggcggc aagcgcatca ccgacacctg ctccggctgc aggaggacac agatgatcca
     1681 atcatttaat cctcccaatc tgtcgcgtgt gcaaactcgt gcactgatcg ttggtgttgt
     1741 gggtttcgtc gtgctcctgg tcagtgcgtt ctttgatcgt aagcagttct ttcaagcgta
     1801 catcgtaggt tttacgttct ggagtggcat cgctgtaggt tcacttgcgc tgttgatgct
     1861 tcaacatctg accggtggcg gctggggcct ggtgataagg cgcattcttg aagcgtcaac
     1921 gcgaacattg ccgctggtcg ttgtcttgtt cattccgatc attatcggtg cccactcgct
     1981 atacgaatgg actgatcagg cagtactcga ggcgcagccg attgtgaagt tcaagacgcc
     2041 ttatttgaat ctgccctttt ttaccattcg cgcggccgtg ttcttcggca tttggttgat
     2101 acttgctttc tttctgaaca agtggtcatt gcagcaggat cgaaccggtg atcgggttta
     2161 cgcgaaaaac atgcgagtac tgagcgggcc aggaatggtg ctgctgatct tctccgtcac
     2221 cttcgcggct atcgattggt tcatgtcgct tgaaccc
//
LOCUS       DATCGC010002068         1157 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_197325, whole genome shotgun sequence.
ACCESSION   DATCGC010002068 DATCGC010000000
VERSION     DATCGC010002068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1157)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1157)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1157
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_197325"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..316)
                     /locus_tag="VIJ87_19655"
     CDS             complement(<1..316)
                     /locus_tag="VIJ87_19655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446633.1"
                     /translation="MNIEALHIGMKVRHPQYGVGTVRSLTEHTAEIAFDDAPRTVAPA
                     TSGLEPAEATATLSELQVPLTSLIRDTAQAVVEALGLEQKDVTVEDLATRWQRGTLVM
                     QSA"
     gene            complement(423..>1157)
                     /locus_tag="VIJ87_19660"
     CDS             complement(423..>1157)
                     /locus_tag="VIJ87_19660"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY5446634.1"
                     /translation="PELLAEELSSPSWKPQVIVMSGVTDSYQPIERRLQITRRCLEVL
                     AHFRNPVAIVTKNRLVTRDIDVLGELASYHGAAVNISVTSLDPNLQRVLEPRTSPPQL
                     RLEAISKLRDAGIPVGVMVAPVIPGLTDHEMPAILAAAARAGAQFAGYVIVRLPWAVA
                     PLFEHWLEEHFPDRKEKVLNRIKHLRGGEKLNDSQWATRMSGTGIFAEQIATLFEISC
                     RRAGIGSRPKLSSASFRRANEQMELL"
BASE COUNT          258 a          311 c          305 g          283 t
ORIGIN      
        1 cagcggattg catcacgagg gttccgcgct gccagcgagt cgcaagatct tcgacggtga
       61 catccttttg ctctaagccc agcgcttcga cgactgcttg cgcggtatct cgaatcagac
      121 tcgtgagggg aacctgcaac tcacttagtg tggctgtcgc ttcggctggc tccagtccac
      181 tggtggccgg tgcaaccgtt cgcggagcat catcaaaagc gatctctgct gtgtgttcgg
      241 tcagggaccg caccgttccc acgccatact ggggatggcg cactttcatt ccaatgtgca
      301 aagcctctat gttcacgtgt ggaagttgaa tcgtgcgaga gagccaatca actcgcaatt
      361 aactaatcat cctcattcgt cttaacctgg aatagatatg ctgtccgcag agcctcgttg
      421 cgttacagca gctccatctg ttcattcgca cgccggaatg aagcactaga gagtttaggc
      481 cgggatccaa ttcccgcgcg acggcagcta atctcaaaga gcgttgcgat ttgctccgcg
      541 aaaattcccg tcccactcat tcgtgttgcc cattgcgaat cattaagttt ctcgcccccc
      601 ctgagatgtt tgattcgatt gagaaccttc tcttttcgat ctggaaaatg ttcttccaac
      661 cagtgttcga aaagcggggc tactgcccaa gggagccgaa caataacgta tcctgcaaat
      721 tgggctccgg cacgagcagc tgcagcaaga atagcgggca tttcgtgatc ggttagaccg
      781 gggattacgg gtgcgaccat tactcctacg ggtattcctg catcacgtaa tttggaaatt
      841 gcttcgagac gaagttgagg cggcgatgtt cgtggttcaa ggactcgctg aagatttgga
      901 tcgagcgacg tgactgatat gttcaccgca gctccatggt aagaagcaag ttcaccaagt
      961 acatcgatgt cgcgcgtgac cagccgattc tttgtcacga ttgccacagg gttacgaaaa
     1021 tgcgccaaca cttccaggca ccgccgggta atctgtagcc gtcgctcgat cggttggtat
     1081 gaatctgtta ctccgctcat tacgatcacc tgcggtttcc aagagggtga agataactcc
     1141 tcggcgagaa gctcggg
//
LOCUS       DATCGC010002069         1187 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_296962, whole genome shotgun sequence.
ACCESSION   DATCGC010002069 DATCGC010000000
VERSION     DATCGC010002069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1187
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_296962"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            233..1153
                     /locus_tag="VIJ87_19665"
     CDS             233..1153
                     /locus_tag="VIJ87_19665"
                     /EC_number="4.1.3.3"
                     /EC_number="4.2.1.41"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: protein motif:HMM:NF012904.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009436 - glyoxylate catabolic process
                     [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HEY5446635.1"
                     /translation="MPITWEGVMPAITTAFDSNLNIDHAAVDSHVNWLVDNGCTGIVT
                     PGSLGESATLSVEEKHTLWKTCIDAVGDRVPVVAAIASLSTAEAVGLAQRAKEMGCSG
                     VMVLPPYVYKSDWREMKAHVDAVFRATNLSCMLYNNPVAYGTDYLPEQIAELASEHEN
                     FHAVKESSTDARRVTWIRELVGDRLAVFVGVDDAIVEAIAVGAVGWVAGLVNALPKES
                     VDLFNYAMNGEREKAIALYNWFLPLLRMDTVPKFVQLIKLVQQEVGMGNARVRAPRLE
                     LAGAELNEALQVIRHALENKPQLETAKAIG"
BASE COUNT          280 a          277 c          351 g          279 t
ORIGIN      
        1 tggattgaag tcagtaccac agcgcggtag cgtgtggctc actcaaattg aagtcagtac
       61 ccagcgcggt agcgcgtggc tcactcattg aagtcagtac cacagcgcgg tagcgtgtgg
      121 ctcactcatt gaagtcagta ccacagcgcg gtagcgcgtg gctcactcaa atgacaaatg
      181 gaaaatgcta gatgatatat gaccaataag ctttttcttt caggaggagt ctatgccaat
      241 aacttgggaa ggcgtgatgc cggcaattac taccgcattc gatagcaact tgaatatcga
      301 tcacgcagcc gttgacagcc acgtgaactg gttggtcgac aatggttgta ccggcatcgt
      361 cacgccgggc tcgctcggtg agagcgcgac gctttccgtt gaggaaaagc acacgctctg
      421 gaaaacctgc atcgacgctg ttggtgatcg agttcccgtg gtcgcggcca tcgcttcatt
      481 gagcacagcg gaggctgttg gcttggcgca gcgtgcaaag gaaatgggtt gtagtggagt
      541 catggtcctg ccgccgtatg tttacaagag tgactggcgt gaaatgaaag ctcacgtcga
      601 cgctgtcttt cgagccacaa atctctcctg catgctttac aacaacccgg ttgcttatgg
      661 caccgactat cttcccgaac agattgctga actcgccagc gaacacgaaa actttcatgc
      721 ggtgaaggaa tcaagcacag atgcgcgacg cgtgacctgg attcgtgaac tcgttggcga
      781 tcgattggcg gtgttcgtag gtgtcgacga tgcaattgtc gaggcgatcg cagtcggagc
      841 tgttggttgg gtggcaggtt tggttaacgc actgccaaaa gagtctgtcg atcttttcaa
      901 ctacgcgatg aacggcgagc gagaaaaagc gatcgcgttg tacaactggt tcctgccgtt
      961 gttgcgaatg gacaccgttc cgaagtttgt gcaactgatc aagctcgtgc agcaggaagt
     1021 tggaatgggg aatgctcgtg tgcgtgcacc acgtttggaa cttgcaggtg cagagttgaa
     1081 tgaagcactg caagtgatta ggcatgcgct ggagaacaag ccgcagttgg agaccgcgaa
     1141 agcaataggt tgagtaatgt ccgatatgcg tctgtcttgt cgttgtc
//
LOCUS       DATCGC010002070         1004 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_197332, whole genome shotgun sequence.
ACCESSION   DATCGC010002070 DATCGC010000000
VERSION     DATCGC010002070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1004)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1004
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_197332"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1004
                     /locus_tag="VIJ87_19670"
     CDS             <1..>1004
                     /locus_tag="VIJ87_19670"
                     /inference="COORDINATES: protein motif:HMM:NF016859.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446636.1"
                     /translation="AKNDGAVRFNDLRTVQALDGSWIALNKNGSISVHNAEGRELERY
                     NVVIGSMISKGDGTDVKKGETFVQWDPYNVPILTDKGGKIEFRDMIAGVTIKRDVDEA
                     TGLMGTVIIEHKEDLHPQIVIVDDKKEVLASYSIPAGAHVIVEEGQKVRGGALLAKTP
                     RKVAKTKDITGGLPRVAELFEARRPKDAAEIAKIDGVVEMGGTVRGKRRLILKDPDTG
                     AEEEHLIPLTKHIIVFKGDFVKKGQQLTEGPVVPHEILEVCGPQDLQEHLVNEVQEVY
                     RLQGVEINDKHIEIIVRQMLRKVKITDPGDTSLLWGDQVDKLDFEDENKQVVEKGGKP
                     "
BASE COUNT          271 a          245 c          307 g          181 t
ORIGIN      
        1 aggcgaagaa cgacggcgcg gtgcgcttca atgatctgcg gactgtccaa gccctcgacg
       61 ggagttggat cgcgttaaac aagaacggtt cgatcagcgt gcacaatgct gaaggccgcg
      121 aacttgagcg ctacaacgtg gtaatcgggt caatgatatc gaaaggcgac ggcaccgacg
      181 tcaagaaggg tgaaaccttc gttcaatggg acccctacaa cgtcccgatt ctcaccgaca
      241 aaggtggcaa gatcgagttc cgcgacatga tcgcgggtgt cacgatcaaa cgcgacgtcg
      301 atgaggcgac agggctgatg ggtaccgtga tcattgagca caaggaagat ttgcacccac
      361 aaattgttat cgtggatgac aagaaagaag tgctcgcgag ttactccatt ccagccggcg
      421 ctcacgtcat cgtggaagaa ggtcaaaagg tgcgaggtgg cgcattgctg gcaaagacgc
      481 cgcggaaagt ggcgaagacc aaagacatca ccggaggttt gccgcgcgta gccgaattat
      541 ttgaagcgcg ccggccgaag gatgcggctg agattgccaa gatcgatggc gtggttgaga
      601 tgggtggcac tgtccgcgga aagcgacgct tgattttgaa ggatcccgac accggagccg
      661 aggaagaaca cctgatcccg cttaccaaac acatcatcgt gtttaagggc gacttcgtga
      721 agaaaggtca gcaacttacc gaaggccctg tagtacctca cgaaattctc gaggtctgcg
      781 gaccgcagga cttgcaggag cacctggtca acgaagtcca ggaagtatac cggctacaag
      841 gtgtggagat caacgacaag catatcgaaa tcatcgtgcg ccagatgttg cgcaaggtga
      901 agattaccga tcccggcgat acgtcgttgc tctggggtga tcaggtcgac aaactcgact
      961 tcgaagacga aaacaagcag gtggtcgaga aaggtggcaa gccg
//
LOCUS       DATCGC010002071         1054 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_261465, whole genome shotgun sequence.
ACCESSION   DATCGC010002071 DATCGC010000000
VERSION     DATCGC010002071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1054)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1054
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_261465"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(194..463)
                     /locus_tag="VIJ87_19675"
     CDS             complement(194..463)
                     /locus_tag="VIJ87_19675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446637.1"
                     /translation="MVYTPHREIRYDYIWDLMADIEERQCQVCIYRSDREEYPMCFEI
                     EGKIITEDPVEELIDLDAQGVVCTKFKLGEPLPPTDPDQLHLFDT"
     gene            complement(463..696)
                     /locus_tag="VIJ87_19680"
     CDS             complement(463..696)
                     /locus_tag="VIJ87_19680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446638.1"
                     /translation="MKLQEITITGEFKDRHEDFLEKLAALIEDNFDCELVGLGIHPVW
                     DDDRDEYAREKAQEAKNLAPDSEWRYKNWDYDG"
     gene            complement(693..>1054)
                     /locus_tag="VIJ87_19685"
     CDS             complement(693..>1054)
                     /locus_tag="VIJ87_19685"
                     /inference="COORDINATES: protein motif:HMM:NF042704.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cyclic-phosphate processing receiver
                     domain-containing protein"
                     /protein_id="HEY5446639.1"
                     /translation="NVLCELWKQGHNTNSYRQAGVLQMKIWVDDVRPQPDAGWMRAYS
                     SKGAIALLEKASHPLWYLIPHTEIALDHDLGGDDTSRPVVLWMIENNFRFEKYTILTA
                     NPVGYEWLEGMIERYLK"
BASE COUNT          234 a          268 c          254 g          298 t
ORIGIN      
        1 ctccgtaccg gtcgtttagg tacatcggcc agtttactac gtccgagagc cagtcggtcg
       61 tagccgggta actcatcggg gtagcggtca gatagttctt gagcaaaaga cgaggctttt
      121 taccgtcgtt cttcttgcgt ccgtgatgga attcaatgtt tcgggacata ctccgataat
      181 agcattatcg gatttaagtg tcaaacagat gtaattggtc tgggtcggtc ggcggcagag
      241 gctcacccaa cttgaatttg gtgcatacca cgccctgggc atcgaggtct attagttcct
      301 ctactgggtc ttcggttata atcttacctt cgatttcgaa gcacatcgga tactcttcgc
      361 ggtctgagcg gtatatgcag acctggcact gacgctcttc gatatcggcc ataaggtccc
      421 agatataatc gtatctgatt tcacggtgtg gagtatagac cattagccgt cgtagtccca
      481 attcttgtat cgccactcac tgtcgggcgc gaggttctta gcctcttgtg ccttttcacg
      541 agcatattcg tcacggtcgt cgtcccatac cgggtgaatg cctaggccca caagttcgca
      601 atcaaagtta tcttcgataa gcgcagccaa cttctctaga aaatcttcgt gtcggtcttt
      661 aaattcacca gtaatggtaa tttcttgtag tttcacttca agtacctttc aatcataccc
      721 tctagccact cgtagcctac gggattggcg gtaaggatag tatacttctc aaaccggaag
      781 ttattctcaa tcatccacaa gactaccggg cggctggtgt cgtcaccgcc gaggtcgtgg
      841 tccagggcaa tctcagtatg tgggataaga taccacaacg ggtggctagc cttttcaagc
      901 agtgcaatgg cacccttgga cgaataggcg cgcatccagc cagcgtcagg ctgaggtctt
      961 acgtcgtcta cccaaatctt catctgtaat accccggctt gtctatagga gttggtgtta
     1021 tggccttgtt tccacagttc gcacaataca tttc
//
LOCUS       DATCGC010002072         1497 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_494843, whole genome shotgun sequence.
ACCESSION   DATCGC010002072 DATCGC010000000
VERSION     DATCGC010002072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1497)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1497)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1497
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_494843"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..888
                     /locus_tag="VIJ87_19690"
     CDS             <1..888
                     /locus_tag="VIJ87_19690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446640.1"
                     /translation="LPPPKTFPESHRSFPVVTGERPELASHHEETKKAKTTKEKIKME
                     KLETSLSNPFGKRQQLLSKTKKGTTVNPPTHFKKNPLIAFIAFLFLMGAFTPAYPDVG
                     VVRPLTTPKGDIAFEVVGQVTNPSPTTSNQYGYLSLINGLSAEQIFTTPNPAAQNETT
                     ARFTFFTDAVTERVIANGRLRIINRIGTTTIYFDDPPDGNFANPDSFRDGTPIVVMDY
                     RQQVILDTGDGTFTVVNLLTIVSTKSFEIGGERFQLGKTGDHFRQFYSGAPPTGTPAL
                     NGVFAGYAVTIERPQQESE"
BASE COUNT          411 a          415 c          354 g          317 t
ORIGIN      
        1 ttaccaccac ccaaaacttt tccggaatct catcgctcat ttcctgtagt gactggtgaa
       61 cggccagaac tggcttctca tcacgaggag acaaagaagg ccaaaacaac gaaagaaaaa
      121 atcaaaatgg aaaaattaga aacgagtctc agcaatccgt ttgggaagag acagcagtta
      181 ttatccaaaa ccaagaaagg aacaacagtg aatccaccga ctcacttcaa aaaaaatcca
      241 ctcattgcgt tcatcgcttt tttgttcttg atgggcgcgt tcactccagc ctatccagat
      301 gtgggggtgg tccgtccgct caccacgcct aaaggcgaca tcgccttcga ggtcgtcgga
      361 caagtcacta atccttctcc tactacctct aaccagtatg gatacctgag cctgatcaat
      421 ggcctgagcg cagagcagat tttcacgaca cccaacccgg cagcgcagaa cgagaccaca
      481 gcgcgcttca cattcttcac tgacgcggtc acggagcgcg tgatcgcaaa cggtcgcttg
      541 cgcatcatca accgcatcgg cacaacgacc atctacttcg atgacccgcc ggacgggaat
      601 ttcgcgaacc ccgattcttt tcgcgatggg actccgatcg tcgttatgga ctaccggcaa
      661 caagtgatcc ttgacacggg tgatggaact ttcaccgtcg tgaaccttct gacaatcgtc
      721 tccacgaaat cttttgagat tggtggtgaa aggttccagc ttgggaagac aggggatcac
      781 ttcaggcaat tctacagcgg cgctccgcct acaggcacgc ccgcactcaa cggcgttttc
      841 gccggttacg cggtcactat cgaacggccg caacaagaat cagaataggt tctcctggtt
      901 ccgggttgaa aggaagaggg atctccttca gtaccttcag caacaaatcc acacagaagc
      961 gagcagataa actaatcgac acgagagcct cttcggtcag cgcacctgac caagaggctc
     1021 tcgataattc tctgcagaaa gaccgagctc gcgcgggtga agtaggtgcg tcgattttcc
     1081 gtcatcccga gcgtagccag agtacagtcc atgcgggtgc cgagcatggc tcaatcacgc
     1141 caccatcacg cttggcgtga gcaacgtgtt tgaccaggat ccgccgttcg ccgctggtgc
     1201 ttctaacttt gaaaacaact acgacgagcg gcaggccaat atcaggggcg cgtctggtat
     1261 gtgtcgttaa aaaagatttt ctaaagctgc tggcatctct agcggtggcc gtctcagccg
     1321 caaaggagga ttctctcgtt ccattgagac cgctctaact tcacaaatct tgccctgaca
     1381 aagcctggca tggataggcg caaattaatt aggaacttcg cctctcgctt cctgtagaga
     1441 ccaatgaaag agaaaataaa aacctcaaca agaaagaaaa cccatgataa caaaaca
//
LOCUS       DATCGC010002073         1413 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_97112, whole genome shotgun sequence.
ACCESSION   DATCGC010002073 DATCGC010000000
VERSION     DATCGC010002073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1413)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1413)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1413
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97112"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1413)
                     /locus_tag="VIJ87_19695"
     CDS             complement(<1..>1413)
                     /locus_tag="VIJ87_19695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446641.1"
                     /translation="TPVLVRSNEGRPTKIEGNPDHPNNRPGDFPVDDPGRDPRGSSAT
                     DIFTQASILSLYDPDRSQTLTFREDIRTWTSFVGAIRTALDEQRPKQGGGIRFLTQPI
                     TSPTVGSQMKELLQAWPQAKWHQYEPANRDNVRAGAVMALGQPVNTTYRFDLADCILS
                     LDCDFLSCLPGSLRYARDFAAKRRVTEESKEMSRLYVVETTPSNTGAKADHQWCVKPS
                     ELEGIARALLAGSGGPDWVSAIARDLQQHKGASIVIAGDQQSPVIHALAHAMNNALGN
                     VGKTVFYSDPLEVNSVDQRQSLQELVNDLDNGHVELLVIVGGNPVYDTPSDLKLDFER
                     LKKAKLRVNLSQYKDETSQLCHWHVNEAHYLESWGDARSYDGTVTILQPLIQPLYDGK
                     TVSELLAVFSGQYDRKPLEIVKTYWQANRNQGQTAGAGAQAGGAGAGGGQAVTPPPAG
                     TVSVAGADFEAWWRQTIHDG"
BASE COUNT          297 a          421 c          356 g          339 t
ORIGIN      
        1 aacccgtcgt ggattgtttg acgccaccag gcctcaaagt ccgcaccagc aacactgaca
       61 gttccagcag gaggtggcgt cacagcttgt cctcctcctg cccctgctcc tcctgcttgt
      121 gcccctgctc ctgccgtctg cccctgattc ctattcgcct gccagtaggt cttaacaatc
      181 tcgagcggct tgcgatcgta ttgacctgaa aacactgcca gcaactcgct cacagtcttg
      241 ccgtcataca gcggttgaat caaaggctgg agaatcgtta cggtgccatc gtaagaacgc
      301 gcatcacccc acgactccaa gtagtgagct tcgttcacat gccagtgaca cagctgcgaa
      361 gtctcatcct tgtactggct cagattaacg cgaagctttg ctttcttgag gcgttcgaaa
      421 tcgagcttca aatcgctcgg cgtgtcgtaa acgggattgc ccccgacgat cacgagcagc
      481 tcaacatgac cattatcgag atcgttaacc aactcctgta acgactgtcg ctggtcaact
      541 gaattcactt ccagtggatc gctgtagaag acggtcttgc caacgtttcc aagtgcgttg
      601 ttcattgcgt gcgcaagcgc gtgaatcacc ggtgactgct gatcgccggc gatcacgatg
      661 ctggcgcctt tgtgttgttg aagatcgcga gcgattgccg acacccagtc cggcccgcca
      721 cttcccgcca aaagagcccg cgcgattcct tccaattcac tcggcttaac acaccattga
      781 tgatctgctt tcgcacctgt attgcttggc gtcgtctcaa ccacgtagag ccgactcatt
      841 tccttgcttt cttcagttac tcgacgcttc gcagcaaagt cgcgcgcgta acgaagtgat
      901 cccggcaaac aggaaaggaa atcgcagtcg agcgacaaaa tgcaatccgc caggtcaaat
      961 cgataagtcg tattcaccgg ctggccgagg gccatcaccg cgcccgcacg aacgttatct
     1021 cggttcgcgg gttcgtactg atgccacttc gcctgcggcc acgcctgaag tagctctttc
     1081 atctgcgagc cgactgtcgg cgaggtaatt ggctgagtta gaaaacgaat tcctccgccc
     1141 tgtttcggcc gctgttcatc cagcgctgtt cgtattgcgc cgacaaacga ggtccacgtt
     1201 cgtatgtctt cgcggaaggt cagcgtttgt gagcgatcag gatcgtaaag actgaggatt
     1261 gaagcctgcg taaaaatatc cgtagcactg gagccacgtg gatctcgtcc tggatcgtcg
     1321 actggaaaat caccgggccg attgtttgga tggtccgggt ttccctcgat ctttgtgggt
     1381 cgaccttcat tacttctaac caggaccggc gtc
//
LOCUS       DATCGC010002074         1866 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_494872, whole genome shotgun sequence.
ACCESSION   DATCGC010002074 DATCGC010000000
VERSION     DATCGC010002074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1866)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1866)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1866
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_494872"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            100..>1866
                     /locus_tag="VIJ87_19700"
     CDS             100..>1866
                     /locus_tag="VIJ87_19700"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEY5446642.1"
                     /translation="MSQKPKSYEQHFLSGTNPAVKKRLRGSRLLSDFFRRAGNSKGLT
                     LRQRQTLVEQALVLLEMNYAHLPLKRAIHAIEPIQRLKLLKFRLADKTTASALSEFGF
                     HEEMQRIFTSLRDFHTNYSLPSPFDEKVAFLPFLVEQFFEGKKRTPKFLVTQVKKGLN
                     HPTFKIGVEVLFWNGVPIKEAIELNGERQAGSNSEAKFAAGLSTFTIRSMIGSLPPAE
                     HWVVVTYRSLDGEELEHKLPWLIVTQRQADALTEARKRKQEARRLGVDLQRSAINDMR
                     KILFAPEAVAAEKKVASATGRRVALKKGLETSMPSVLRASKKKTDFGTFGYLRIFHFE
                     AEDGDKFVAEVLRLVEALPQEGLIIDVRGNGGGFIDNGERLLQLFTPKSIEPELFEFV
                     NSPLNLDLCRTAPKDQGLSPFADSIAQSVLIGSSYSVGLPLTSKELCNEIGQRYFGPV
                     ILIIDALCYSTTDMFAAGFQDHNIGDVLGADGNTGAGGGNVWDHGDLLSLMRTSKKSP
                     YRRLPGNAGMRVALLRSLRMGQRSGTPLEDLGVIPDDRHYMTKRDLLEGNMDLINHAA
                     ENLSKKRVRQLSVDLADNADGTS"
BASE COUNT          470 a          425 c          513 g          458 t
ORIGIN      
        1 actgattgac caaaacagcc gactctactg cgttgcggta ctgacgtcgc taccaaagag
       61 atctaaaacc tcgtcaaatt tcgtgcggga gttaccttca tgtctcaaaa accaaaatcc
      121 tatgaacagc attttctcag cgggacaaat cctgcggtga agaaacggct ccgaggttcc
      181 aggctcttgt ctgatttctt caggagagca gggaactcaa aagggctcac gctgaggcag
      241 cggcaaacac tcgtagaaca ggctctcgtg ttgttggaga tgaattatgc tcatctgcca
      301 ctgaagcgcg ctatacacgc gattgaaccg attcagcgtc tgaagctttt gaagtttcgc
      361 ctggcagaca agacgaccgc cagtgcactc agtgaatttg gttttcacga agagatgcaa
      421 aggattttca cttcgcttcg agactttcat actaactact ccttaccttc gccgtttgat
      481 gagaaagttg cctttctgcc ctttctggtc gaacagtttt tcgaagggaa gaagcgaaca
      541 ccaaagttcc tagttacgca ggttaaaaaa ggactgaacc acccgacttt caaaattggg
      601 gttgaagtac tgttctggaa tggtgttcct atcaaggaag cgattgaact caatggcgaa
      661 agacaggctg gaagtaactc ggaagctaag tttgctgccg ggctatcgac atttacgatt
      721 cgctcgatga ttgggtcttt gccgccagcc gaacattggg ttgttgtcac ttatcgctcg
      781 cttgatggtg aggagcttga acacaaacta ccttggctga tagtgacaca gaggcaagca
      841 gacgctctca cggaagcaag gaaacgtaag caagaggcaa ggcggttagg tgtcgacttg
      901 cagcgttcgg ctatcaacga catgaggaag attctttttg cgccggaggc ggttgcagct
      961 gagaagaagg tggcttcggc aacaggcagg agagtagcgt taaagaaggg cctcgagacg
     1021 tccatgccat cagtattgcg cgcgagtaag aagaaaactg atttcggtac attcggttat
     1081 ctacgcatct ttcattttga agccgaggat ggagataaat tcgttgccga agttctacgt
     1141 ttggttgagg cattgccaca ggagggttta atcattgatg tgcgaggcaa cggtggtggc
     1201 ttcattgata acggtgagcg cttgttgcag ttgttcacac ctaaaagcat cgagccggag
     1261 ttgtttgagt ttgtgaattc gccattgaac ctggatttgt gtcggactgc cccgaaggac
     1321 caggggctct cacccttcgc tgactcgatc gctcagtcag ttttgatcgg ctcgtcttac
     1381 tctgtaggtt tgccacttac atctaaagag ctctgcaacg agataggcca aaggtatttt
     1441 ggtccagtga tacttatcat cgatgcgttg tgctacagca cgacggacat gtttgccgcc
     1501 ggtttccagg atcacaacat tggggacgtt ttaggggccg atggaaacac cggagcaggt
     1561 ggtggaaacg tttgggacca cggcgatctg ttaagcctga tgagaacctc gaagaagtcg
     1621 ccttacaggc gtctgcccgg taacgcaggg atgcgagtgg cgttgttgcg cagcttgcgt
     1681 atgggtcaac gttcgggtac gccgctcgaa gatcttggcg tcatcccaga cgatcgacac
     1741 tacatgacca agagagatct actcgaaggc aacatggacc tgatcaatca cgcagctgag
     1801 aatctctcga aaaagcgagt gcggcagttg tcggttgatc tggcagacaa tgcagatggc
     1861 acgtcg
//
LOCUS       DATCGC010002075         1486 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_462473, whole genome shotgun sequence.
ACCESSION   DATCGC010002075 DATCGC010000000
VERSION     DATCGC010002075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1486)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1486)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1486
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_462473"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..571
                     /locus_tag="VIJ87_19705"
     CDS             <1..571
                     /locus_tag="VIJ87_19705"
                     /inference="COORDINATES: protein motif:HMM:NF025617.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4350 domain-containing protein"
                     /protein_id="HEY5446643.1"
                     /translation="TLTSAPTAANLKGSHIYIIVDPDTPTESEKPNYVQSNDVKAIAD
                     WVKAGGVLVLMGNDVGNSEFDHFNQLAKAFGIEFKKDSRNKVPGNDFTMGRLVVTPPH
                     PIFKTARNLYLKELSTLQIKAPASAVYSDSGDVIMAVAKFGKGTVFAVGDPWLYNEYT
                     DGRKLPSEYDNFKAANDLALWLIQQSKKK"
     gene            595..1326
                     /locus_tag="VIJ87_19710"
     CDS             595..1326
                     /locus_tag="VIJ87_19710"
                     /inference="COORDINATES: protein motif:HMM:NF019349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FadR/GntR family transcriptional regulator"
                     /protein_id="HEY5446644.1"
                     /translation="MNDSKAAMFRLIDAERRGTTSEEVVSQLREMIHKGELRPGDRLP
                     PERDLAKLLGVSRPTLRAGISSLAAVGVLQPRRGAGTFVVEAEGSPALDSSPLRLMAA
                     LQRFTPAEMFEARRSLEMAIAGLAAERATGDQMASMSEEVTGMFASLDEPEQFLVHDM
                     RFHQTIAAASGNRILTALMNMVATILFEVRSKTVQRARDLKESAEMHRSIYRAIRDRN
                     TDAARDAMRDHLMKAQKAQEEEEQN"
BASE COUNT          398 a          369 c          394 g          325 t
ORIGIN      
        1 aacgctcacc agcgcaccta ctgccgctaa cttgaaaggg tcgcatatat acatcattgt
       61 cgatcccgat accccgaccg aatctgagaa accaaactac gtccagagta acgacgttaa
      121 ggctatcgct gactgggtca aagccggtgg agtgcttgtc ttaatgggta acgatgtagg
      181 caactccgag tttgatcatt tcaatcaact cgcgaaagcc tttggcattg agtttaagaa
      241 agacagccgg aataaagtac ccggcaatga tttcacgatg ggcagactcg tcgtaactcc
      301 gccgcatccg atcttcaaga cagcgcgtaa tctctatctc aaagaactgt cgacgttgca
      361 gatcaaggcg cccgcaagcg cagtttattc ggattccggt gacgtaatca tggcagtcgc
      421 gaaattcgga aagggaactg tcttcgccgt cggtgatcca tggctttaca acgaatacac
      481 cgatggaaga aagctcccga gtgagtatga caattttaaa gctgcaaacg acctggcgtt
      541 gtggctgatc caacaatcaa agaaaaaata agaagggtat actacccaaa cctgatgaac
      601 gactcgaaag cagctatgtt cagactaatc gatgcagagc gacgcgggac aacatctgaa
      661 gaagtggtct cgcagcttcg cgagatgatt cacaagggtg agcttcgacc gggtgaccgt
      721 ttaccaccgg aacgagacct cgctaagtta ctgggcgtga gtcgacctac tttgcgcgcc
      781 gggattagtt cgcttgcagc agttggtgtc ctccaaccac gtcgaggggc agggacgttt
      841 gtcgttgaag ctgaaggctc accggcgctc gacagtagtc ctctacgttt gatggcggca
      901 ttgcagcggt ttacaccggc cgagatgttt gaagctcgca ggtcactcga gatggctatc
      961 gccggacttg cagctgaacg tgctacgggt gatcaaatgg cctcgatgtc ggaggaggtt
     1021 accggaatgt ttgcttcact tgatgagccg gaacagtttc tggttcacga tatgaggttt
     1081 caccaaacga ttgccgcagc ctccggaaac agaatcctca cggcgttgat gaacatggtg
     1141 gcgacgatcc tgtttgaagt gcgtagcaag acagtgcagc gcgcgcggga cttgaaagag
     1201 tcagccgaga tgcaccgcag tatctacagg gcaatcaggg accgaaacac tgatgccgcg
     1261 cgcgatgcga tgcgtgatca cctgatgaaa gcccaaaagg cgcaggaaga agaagaacag
     1321 aattagtttc aagtttcgag tttcaagttt caggtttgac tgtgaaccaa gggtctaaca
     1381 aaactcgaaa ctcgaaacgc gaaacttgaa acgttccgag gtaaaggccc atccgcaaac
     1441 tcaaatcggc aatcatctcc ctcctgctgt tcacttcgct ttcttc
//
LOCUS       DATCGC010002076         1601 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_394151, whole genome shotgun sequence.
ACCESSION   DATCGC010002076 DATCGC010000000
VERSION     DATCGC010002076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1601)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1601)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1601
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_394151"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(413..>1601)
                     /locus_tag="VIJ87_19715"
     CDS             complement(413..>1601)
                     /locus_tag="VIJ87_19715"
                     /inference="COORDINATES: protein motif:HMM:NF028240.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="putative porin"
                     /protein_id="HEY5446645.1"
                     /translation="RFDGIFRSPTEPGDPPVTHVQNARARYRFRLNLDTDLYPTLSFH
                     GQLATGPVNNALTSDQDFGGITAKHPFFISEAWIDYHPTKEVQLQGGRVQAIFADNSR
                     FLFDDDVRFNGFNEKYVKSFKKNDGYFSSVEFRAGQYIFSNPNVAIITPGSPLARAGE
                     VVGTTGRSANLFHQGVLVNQSFNEKWSDQFGGDVQLYRHPNQIQLASTADGVVLLVQP
                     GLGITLSGPLAGTGNATTTPGGAIYTAPAFQIGRLTYKLNYSGFQKGGHNFPVTLNLQ
                     VARNFGTGLNERDAMLAALQIGKITKRGDTSFLYVFSIKGANALISQVTDDDLGTGTG
                     VNIRTNHFRFEYGIAKKVTLQSLFFIQNSLRSSGQYPNFFVPVSAFVPTSYRLQQQIV
                     FSF"
BASE COUNT          383 a          376 c          447 g          395 t
ORIGIN      
        1 ccggattctt tcaacacgcc ttgcgcgctg ttgtcggtat ggttgtagca gtggtggttg
       61 ctgccagtgt tggcgcgtta ctgcacttca tgggtgtgcc agtgccgagc gcgcaccagc
      121 tcttacgaag ttttgaaggt cttttctgaa ctctcgaaga ttgggtagtt ggtgagcgct
      181 gaattgaata agtgttacga acttttggga gtaagccctg gcgagtttag gaattcgtaa
      241 gcccctcacc aatctatacc agttaatgcc ccgtagactg agaccgcgcg cgtctcgccc
      301 gcaacagcgc tgtcgggggc gcggacgtta accgcgagga tcgaggccct cgcgaaatga
      361 acgcgcaagc ggcgttgcgg tgggcgagac gcccgcggtc tcagtaataa atctagaacg
      421 agaacacgat ctgctgttgc aagcggtagc tggttggtac aaacgcactc actggaacga
      481 agaagtttgg gtactgtcca ctgcttcgaa gtgaattctg aataaagaat aagctctgca
      541 atgtaacttt cttagcaatt ccatattcaa atctgaagtg atttgtacgg atgttcacgc
      601 ctgtaccagt gccgagatca tcatcagtga cttgcgaaat caacgcgttg gcccccttga
      661 tagagaagac gtaaaggaaa gacgtgtcgc ccctcttagt gattttgcca atctgtaaag
      721 cagccagcat agcatcacgc tcgttcaacc cagtgccgaa atttcgtgcg acttgaagat
      781 tcaaggtgac aggaaaattg tggcctccct tttggaatcc tgaatagttc aacttgtatg
      841 tgagcctgcc gatctgaaac gcaggagcgg tgtagattgc gccacctgga gttgttgtgg
      901 cgttacctgt gccggcgagt ggaccagata gtgtaatccc gagtccgggt tggacaagaa
      961 gaacaacgcc gtcagcagtc gacgcaagct ggatctgatt tgggtgacga taaagttgaa
     1021 cgtcaccgcc gaactgatcc gaccactttt cattaaatga ctgattcacg agtacaccct
     1081 ggtggaaaag attcgcggag cgacctgtag tgccgacgac ttcacctgcg cgtgctagcg
     1141 ggctaccagg cgtgatgatc gcgacgttcg gattgctgaa gatatattgt cctgcgcgga
     1201 actctacgct cgagaagtag ccatcatttt tcttaaacga cttgacgtac ttctcgttga
     1261 atccgttgaa gcggacatcg tcgtcgaaca ggaagcgcga gttgtcagcg aaaattgctt
     1321 gaacccgtcc gccttgtagt tgaacttctt tggttgggtg atagtcaatc cacgcctcgc
     1381 tgatgaagaa aggatgtttg gctgttattc ccccaaaatc ctggtctgag gtaagtgcat
     1441 tgttgactgg gccagtagca agctgaccgt gaaaacttag ggtcggataa agatcggtat
     1501 ccaggttaag tctgaatcga taacgggctc gtgcattttg aacgtgggtc accggcggat
     1561 caccaggctc agttggcgaa cggaagatgc cgtcgaatcg a
//
LOCUS       DATCGC010002077         1222 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_365657, whole genome shotgun sequence.
ACCESSION   DATCGC010002077 DATCGC010000000
VERSION     DATCGC010002077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1222)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1222)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1222
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_365657"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..726
                     /locus_tag="VIJ87_19720"
     CDS             <1..726
                     /locus_tag="VIJ87_19720"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HEY5446646.1"
                     /translation="KTKDQRPKTRTMIKAIFFDFNGVIIDDELIQMNAYKEVLKEYGI
                     DLTEEWYMSALGMDDRTFVHAMFERAKKENSPSIVESVLNTKTELHRKMIEDELPLFP
                     GVLNFLKATARHFSLGLVSMANAAEIGYVFERANLGPLFSVTVMAGDVSVCKPAPDCY
                     RLGLEKLNQHRQQQRLLPLLPSECLAIEDSPPGIQSARVAGMHTLGITNTVSEEALRS
                     VGAEVVTHSLADWTPDSVKHVFS"
     gene            774..>1222
                     /locus_tag="VIJ87_19725"
     CDS             774..>1222
                     /locus_tag="VIJ87_19725"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5446647.1"
                     /translation="MSFLDILNLALRNLRQAKLRATLTTMGVIVGVAVIVTMMSFGLG
                     LQRNMLERFGALDLFNEIQIFGQGLSNLAGLGRDVGRRDEGERRNGRQRADKTPSRIL
                     DDAGVQEIAKIPGVAYVEPNVNFGGYVRSNGKILSQNVGGANIPNASS"
BASE COUNT          310 a          284 c          330 g          298 t
ORIGIN      
        1 aagaccaaag accaaaggcc aaagacccga acaatgatca aagccatctt tttcgatttt
       61 aacggcgtca ttatcgacga cgaactcatt caaatgaatg cttacaagga agtcttaaag
      121 gagtacggta ttgatttgac cgaagaatgg tatatgagcg cgctgggaat ggacgatagg
      181 acgttcgttc atgccatgtt tgagcgcgca aagaaggaaa actctccgtc gattgtggag
      241 agtgtattga atacaaagac tgaactgcat cggaaaatga tcgaagacga gttgccgttg
      301 tttccaggcg tgttgaattt tctaaaggca actgccagac atttttcgct tgggctcgtc
      361 agcatggcga acgcggctga gattggttat gtgttcgaac gcgccaacct cgggccactc
      421 ttttcagtca ccgtgatggc tggtgacgta tctgtttgta aacccgctcc ggattgttat
      481 cgactcggat tggaaaaact caatcagcat cgacagcagc aaagactgtt gccgcttctt
      541 cccagtgagt gtcttgctat tgaagattcg ccgccgggta ttcagtccgc gcgcgtagcc
      601 gggatgcaca cgctcggtat tactaacaca gtcagtgaag aagcgctgcg ttcagttggt
      661 gctgaggttg tgacccacag tctcgccgac tggactcccg attcggtcaa acatgtattt
      721 agttgaagcc ctttagtagc tactaaaggg cagcttaaag agaacctgac gttatgagtt
      781 ttctcgacat cctcaacctg gcacttcgca atctacgaca ggcgaaactg cgtgcgacgt
      841 tgacgactat gggcgtcatc gttggcgttg cggtgatagt cacgatgatg tcgtttggac
      901 tcggtctaca gcgcaatatg cttgaacgtt ttggtgcgct cgatcttttc aacgagattc
      961 aaatctttgg ccaggggctg agcaatctcg ccggccttgg tcgagacgtt ggaagacgag
     1021 acgaaggtga gcgacgaaac ggacgccaac gcgccgataa aacaccgtct cgaattctcg
     1081 acgatgcagg tgtccaggag atcgcaaaga taccgggcgt ggcctacgtc gaacctaatg
     1141 tgaatttcgg tggctatgtt cgctcaaacg ggaagatact tagccaaaat gtcggcgggg
     1201 caaatattcc gaacgcgtcg tc
//
LOCUS       DATCGC010002078         1419 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_394178, whole genome shotgun sequence.
ACCESSION   DATCGC010002078 DATCGC010000000
VERSION     DATCGC010002078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1419)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1419)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1419
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_394178"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            208..777
                     /locus_tag="VIJ87_19730"
     CDS             208..777
                     /locus_tag="VIJ87_19730"
                     /inference="COORDINATES: protein motif:HMM:NF039496.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5655 domain-containing protein"
                     /protein_id="HEY5446648.1"
                     /translation="MSSVDKAIETQLKNIQTRTGKTLEQLYAHIKKSGLAKHGEIRDM
                     LKKDLALGHGDANTLVHTYLKAGTGGSAAPSSTDAVLDQIYAGPKADLRPIHEKLMSA
                     INKFGEFEIAPKKGYVSLRRKKQFAMIGPATNTRVEVGLNMKGVKGTDRLNELPAGQM
                     CQYKVKVTDAKEVDKELVDWLRQAYDSAG"
     gene            878..1162
                     /locus_tag="VIJ87_19735"
     CDS             878..1162
                     /locus_tag="VIJ87_19735"
                     /inference="COORDINATES: protein motif:HMM:NF023174.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3303 family protein"
                     /protein_id="HEY5446649.1"
                     /translation="MLYMVIERFKNRDAATAVYKRFAERGRMLPEGLKYIDSWVEEDF
                     GRCFQLMETDDPKLFEEWISCWSDLVDFEVIPVNSSVAASEMTGGMKQEQ"
BASE COUNT          396 a          341 c          360 g          322 t
ORIGIN      
        1 tggcaaaccg ttgaaacggt tcctgagtaa tgagcgcgca ccataacccc aagctgaagc
       61 ttggggagaa tgagagcgtt cgcactgtcg ctgctgatcc gatgacaact tcagtctttt
      121 gcaagtgcct ctttagcttg tcgttgtcta tcaaaaagga tttcgccact aattaacgag
      181 atagaactga tcagaaagga actattcatg agtagcgtag acaaagccat cgaaactcaa
      241 ctcaagaata ttcagacgag aaccggaaaa actctcgagc agttgtacgc acatatcaaa
      301 aagagtggtc tcgctaagca tggtgagatt cgcgacatgc tcaagaaaga ccttgctttg
      361 gggcatggcg acgcgaacac ccttgtgcat acttatctga aagcgggaac cggtggctcg
      421 gctgcgcctt catcgactga tgctgtgctc gaccagattt acgctgggcc aaaggcagac
      481 ttgcgtccga tccatgaaaa actaatgtcg gcaatcaaca agtttgggga gtttgaaatt
      541 gcgccgaaga agggttacgt cagcctaagg cgaaagaaac agtttgcaat gataggtccg
      601 gcgacaaaca cccgagtgga agtgggattg aacatgaagg gtgttaaagg cactgatcga
      661 cttaacgaac taccagccgg ccaaatgtgt caatacaaag ttaaagtcac agacgcgaaa
      721 gaagtagaca aagaactagt cgactggctg cgccaggcct acgacagcgc tggctgatgt
      781 ccgtactaat gtccgataaa ctttagcttg tcgttgtctc tcaaaattct ttctagagta
      841 aacgacaagt taaagcatat cggacattca aacatttatg ctctacatgg ttattgaacg
      901 tttcaagaac cgcgacgcgg cgacggccgt ttacaaacgc ttcgctgaac gtggtcgcat
      961 gcttcccgaa ggcctcaagt acatcgacag ttgggttgaa gaagactttg gccgttgttt
     1021 tcaattaatg gaaactgacg acccaaagct attcgaagaa tggatatctt gctggagtga
     1081 ccttgtcgac ttcgaagtga ttcctgttaa cagctctgtt gccgcgtcgg aaatgacagg
     1141 cggcatgaag caggagcagt aggccgcggc tttgccggct cccatgcgga atgcctccgg
     1201 ctttccgtgc gccactcaga aaagaagagg cttcgcctcc tgcggcgtag ccgccaaaag
     1261 agtcgccaac ttaacggaaa gccggaggca ttccgcacgg gaggtggcac agccacataa
     1321 caatcacaac ggttcattta ggcctcgcca ttgctctaaa acgaacgttc gtgctatata
     1381 cattgctcga ggtttgtctc ttgaccacgt cccaacttc
//
LOCUS       DATCGC010002079         1231 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_297069, whole genome shotgun sequence.
ACCESSION   DATCGC010002079 DATCGC010000000
VERSION     DATCGC010002079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1231)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1231)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1231
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_297069"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..972
                     /gene="thiO"
                     /locus_tag="VIJ87_19740"
     CDS             <1..972
                     /gene="thiO"
                     /locus_tag="VIJ87_19740"
                     /EC_number="1.4.3.19"
                     /inference="COORDINATES: protein motif:HMM:TIGR02352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016647 - oxidoreductase activity, acting
                     on the CH-NH group of donors, oxygen as acceptor [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine oxidase ThiO"
                     /protein_id="HEY5446650.1"
                     /translation="APQAEADSRDDFFELLCQSRDLYASFAESLKDETGVDIELDTTG
                     TLYLAFSEHDQREIDERFEWQTRAGLPVEKLTREEARLLEPCVSPNVSSALRFPNDIQ
                     VENRRLLSALANSVSRLEVQISNGVHVEKVRTENNRVVGVETSAGFIGCSTVVVAAGA
                     WTSLVDSKIRVEPVRGQIVCLSAKPQLTRHVIYSPRGYVVPRQDGRLLAGSTSEAVGF
                     EKEVTVDGVTTILRNAIEISPSIAALPIADTWAGLRPRSADGLPVLGPCGEIDGLVFA
                     TGHYRNGILLAPVTGELIASAIVQGFVPRELAPFSPDRFAARMSDML"
BASE COUNT          286 a          308 c          345 g          292 t
ORIGIN      
        1 gcgccgcaag ctgaagccga ctcgcgtgac gatttctttg agctactctg tcaaagccgc
       61 gatttgtatg cgagcttcgc tgaatcatta aaagacgaaa ccggtgtcga tatcgaactc
      121 gacacaaccg gcactctcta cctggctttc agcgaacacg atcagcggga gattgatgaa
      181 cgcttcgagt ggcaaacacg agcgggcttg ccggttgaaa agctcacgcg tgaagaggcc
      241 aggctgcttg aaccctgtgt ttctccaaac gtctccagcg cacttcgttt tccaaacgac
      301 attcaagtcg agaaccgtcg cctgctgagc gcgctcgcta atagtgtttc ccggctcgag
      361 gttcagataa gtaatggagt tcacgtcgaa aaagtgcgaa cagaaaacaa tcgagttgtt
      421 ggagtagaga cttccgccgg tttcatcggc tgttcgacgg ttgtggtcgc agccggagcg
      481 tggacgagtc tcgtggattc aaaaatcagg gtggaaccgg ttcgcggaca gatagtgtgt
      541 ttgtcggcga agcctcaact aacccgacac gtgatctaca gccctcgtgg atacgttgtg
      601 ccgagacaag acggtcgact tctcgccggt tcaacgagtg aggcggtagg cttcgaaaag
      661 gaagtaacag ttgacggcgt aacaacaatc ctaaggaatg ctatcgagat ttcgccgtcg
      721 attgctgccc tgccaatagc ggacacttgg gctggattgc ggcctcggag tgcggacggt
      781 ttgcctgtgc tcgggccttg tggtgaaatt gacgggctgg tttttgcaac cggacactat
      841 cgaaacggaa tcttactcgc gccggttacg ggagaactga ttgccagcgc cattgttcaa
      901 ggatttgtcc cacgtgagct tgctcccttt agtcctgatc gtttcgcagc ccgaatgtcc
      961 gatatgcttt agcttgtcgt gatcacagcc aaggacgctc tagaggaaag cagcgacaag
     1021 ctaaagcata tcggacactc ggcactgcac tccaagttag ttaacgatga ctctgtttca
     1081 aacaaagctg attcttttag tcgcgctgat tctggtcggc tcggtctgcg tgttcgctca
     1141 agcgccggaa gcgaagaccg acgaacgaac tgcgcaggct gtgtttgaag atgctaatgg
     1201 ttatctcggt cgtcgttatc aagagttcaa t
//
LOCUS       DATCGC010002080         1507 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_426926, whole genome shotgun sequence.
ACCESSION   DATCGC010002080 DATCGC010000000
VERSION     DATCGC010002080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1507
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_426926"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(67..936)
                     /locus_tag="VIJ87_19745"
     CDS             complement(67..936)
                     /locus_tag="VIJ87_19745"
                     /inference="COORDINATES: protein motif:HMM:NF033543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS256 family transposase"
                     /protein_id="HEY5446651.1"
                     /translation="MSLLIREAFLRGISTRQVGRVVALLTEEPVSAQTVSQLTRDLDG
                     AVQEFHRAPLGDNWKFLFLDGVSLKVRGVAGRKRVHMLVAYGIKPDGTRQLLAFMRSQ
                     GESQTAWEGFLENLYQRGLEGDNLRLIVTDGCPGLGAALQRIYPRVAHQRCWVHKMRN
                     LVEGTRKRDRDEVKEAAQAIYTASSRKQAEMAFRAFKLRWRKEYPALVKRLEKDLPEL
                     LAFFTLPQPLWKKLRTTNVIERCFVEVRRRTRPMVCFVNVKSVDRIIFSIFNRFNLEW
                     KHKRTLRAFTQAA"
     gene            complement(924..1256)
                     /locus_tag="VIJ87_19750"
     CDS             complement(924..1256)
                     /locus_tag="VIJ87_19750"
                     /inference="COORDINATES: protein motif:HMM:NF013068.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEY5446652.1"
                     /translation="MRNLAPESEHFQHFFEEVREDFWEGLYRRTKEAWKKFFDAESER
                     DRDRYCGLGWYERGNESKTDYRNGYYERDWVTRFGTIRLRIARTRARIFCPRDYGVFR
                     GERTRCRC"
BASE COUNT          319 a          463 c          365 g          360 t
ORIGIN      
        1 agctgcaacc ttcaagtata aggtcccctc tgtaacaggg tcaagcgtca gcgccgatcg
       61 gtgccgtcaa gcagcttgtg taaaagctcg gagggtgcgt ttgtgtttcc actcaaggtt
      121 gaaccggttg aagattgaga aaataatccg atctacgctc ttgacgttta cgaagcagac
      181 catcggcctg gtacggcgcc gcacctcgac aaagcaccgc tcgatcacgt tagtcgtgcg
      241 cagttttttc caaagcggct gtggaagggt gaagaacgca agcagttccg gtaagtcctt
      301 ctctagtcgt ttgactagcg ctggatattc cttacgccag cgcaacttga acgcgcggaa
      361 tgccatctca gcctgctttc tgctgcttgc ggtgtagata gcctgggcgg cttccttaac
      421 ctcgtcccga tcccgtttgc gagtcccctc aaccaggttt ctcattttgt gcacccaaca
      481 gcgctggtgt gccaccctgg gatagatccg ctgcaaggca gcccccagac caggacagcc
      541 atcggttacg atcaaccgca agttgtcgcc ctcgaggccg cgctggtaaa gattctccag
      601 aaacccttcc caagccgttt gactctcgcc ctggctgcgc atgaatgcca gtagctgcct
      661 cgtcccatcc ggctttatcc cgtacgccac cagcatgtgg actcgcttcc gcccagctac
      721 tccgcgcacc ttcaggctga cgccgtccag aaacaagaac ttccagttat cccccagcgg
      781 agcccggtga aactcctgca ccgccccgtc caggtctcgc gtcagctgag acaccgtttg
      841 cgcgcttacc ggctcctcgg tcaaaagcgc cactactcgc cctacttgcc gtgtgctgat
      901 cccccgcaga aacgcttctc gtatcaacaa cgacatctcg tccgctcgcc tctgaaaacg
      961 ccgtaatccc ttgggcagaa aattcttgct ctcgtccggg caattcgcag ccgtatcgta
     1021 ccgaatcgag tcacccagtc tcgttcgtag tagccatttc gatagtccgt cttcgactca
     1081 ttccctctct cataccagcc caatccgcag taacgatccc gatcacgttc ggattcggcg
     1141 tcgaagaact tcttccacgc ctccttggtc cgcctgtaca gaccctccca gaaatcttcc
     1201 cgtacctctt caaagaaatg ttggaagtgt tcactctccg gtgctaggtt tctcataggg
     1261 tgtaagctcc tttcggaaat ggttctgaat tggccttcaa aaccaactta caccctcttc
     1321 acttttacac actcaacatt acgtcaccgt gcgatgggtg aaattgacag agtctggagg
     1381 gctgtgctag ttttctcact tcgtgggtca gcccggagga atggatgaag ttttcgtcga
     1441 ggaaggtgga tggagtcatc ataatcgata tcgagggcaa gatcctcatg ggagagggag
     1501 atatcga
//
LOCUS       DATCGC010002081         1622 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_297078, whole genome shotgun sequence.
ACCESSION   DATCGC010002081 DATCGC010000000
VERSION     DATCGC010002081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1622
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_297078"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1250)
                     /locus_tag="VIJ87_19755"
     CDS             complement(<1..1250)
                     /locus_tag="VIJ87_19755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446653.1"
                     /translation="MGESDFDQQFDEKTSQAFMKALLEDLRALEYMIATGGFETGVSR
                     IGAEQEMFLVDRNMRPAPISLEVLDHAKDSRLTTEIARFNLEANLTPLSLTGRCFQQM
                     EKELNELLSLVRKSAETFGADVLLSGILPTLQKSDLTLENLAPIPRYSQLNEGVMRLR
                     GGPFSIHIKGLDELQISHDNVMMESCNTSFQVHFQTSPAEFASRYNMAQAITAPVLAA
                     AVNSPLLFGHRLWQETRVALFQHSIDSRSSTQLARGQPTRVSFGDRWLKNSVVELFHD
                     QISRFRPIMITQPDEDPFQLLARGETPLLSALRMHNGTVWRWNRACYGVADGIAHLRI
                     ENRALPSGPTVQDEMANAAFFVGLMIALPPEYGEIAKRLSFDDAKENFFAAARNGLNA
                     QLKWLDGKSISATSLILNELLPLAR"
     gene            complement(1360..>1622)
                     /locus_tag="VIJ87_19760"
     CDS             complement(1360..>1622)
                     /locus_tag="VIJ87_19760"
                     /inference="COORDINATES: protein motif:HMM:NF024834.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEY5446654.1"
                     /translation="SAASPTEGGEQFDAGATYKSKCVACHGQKAEKKFDVSLPDQQLV
                     DIVMKGKKPEKPPNMPAYGEKGVTPEQAKALVEHMKQLKSAP"
BASE COUNT          373 a          441 c          422 g          386 t
ORIGIN      
        1 cgcgccaatg gcaaaagttc attaagaatt agagaagtcg cgctgatgct tttgccgtca
       61 agccatttca actgcgcatt taatccattg cgtgctgcag cgaagaagtt ttccttggcg
      121 tcgtcgaaac ttaggcgctt cgcgatctcg ccgtactcgg gcggcaatgc gatcattagc
      181 ccaacaaaga aagccgcatt tgccatctca tcctgcacgg tcggcccgga tggcagcgcg
      241 cgattctcga tccgcaagtg ggcaattcca tcggcaacgc catagcaggc gcggttccag
      301 cgccacaccg tgccattgtg cattcgcaga gctgagagaa gcggagtctc acctcgcgcc
      361 aataattgaa atggatcttc atcaggttgc gtgatcatga tcgggcggaa gcgagaaatc
      421 tgatcatgga agagttctac aacggagttc ttaagccaac ggtcgccaaa actcactcgt
      481 gttggctgac cacgggccaa ttgtgtactc gaacgagagt cgatcgagtg ttggaacaac
      541 gccacacgcg tttcctgcca taaacgatga ccaaacaaga gaggtgagtt aactgcggct
      601 gcgagcaccg gagccgtaat cgcctgggcc atgttgtaac gcgacgcgaa ctccgcggga
      661 ctcgtttgaa agtgcacctg gaaacttgta ttgcacgatt ccatcatgac gttgtcgtgc
      721 gagatctgga gttcgtccag gcctttaatg tgaattgaga aaggtccgcc ccgaaggcgc
      781 attacgccct cgttcaactg agagtagcgt ggaatagggg caaggttttc cagcgttaga
      841 tctgattttt gcagcgtcgg caagatgccg gaaaggagca cgtcggcgcc gaaggtctcg
      901 gcactcttac gcaccaaaga caagagttcg ttcaactcct tctccatctg ctgaaaacat
      961 ctcccggtta atgacagtgg agtcaaattc gcttcgagat tgaacctggc gatctcagtt
     1021 gtcaggcgcg agtcctttgc gtgatccaaa acttccaaag aaatcggtgc aggccgcatg
     1081 ttccgatcaa cgaggaacat ttcctgttcg gcgccgattc gcgacacacc agtttcgaag
     1141 ccaccggttg cgatcatgta ttcgagcgca cgcagatcct caagcagcgc cttcataaag
     1201 gcctgagatg ttttctcgtc aaactgctga tcaaagtcgg attcgcccat tggatttcag
     1261 aaaacgatta cctcggccac acactgggaa tagtcaatca tgcgaactaa cacgaattac
     1321 cgttggtgtc tgttcgtgga gtttcgtgga tcatcccggt tacggtgcgc tctttaactg
     1381 cttcatgtgt tccaccagcg cctttgcctg ctccggggta acaccctttt cgccgtaggc
     1441 aggcatgttc ggaggtttct caggcttctt gcctttcatc actatgtcga ccagttgctg
     1501 gtccggcagg ctcacatcaa acttcttctc cgccttctgc ccgtgacagg caacgcactt
     1561 ggacttgtac gtcgcaccgg catcgaattg ctcaccacct tcggttggtg atgcagccga
     1621 ta
//
LOCUS       DATCGC010002082         1318 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_494941, whole genome shotgun sequence.
ACCESSION   DATCGC010002082 DATCGC010000000
VERSION     DATCGC010002082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1318)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1318
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_494941"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            203..>1318
                     /locus_tag="VIJ87_19765"
     CDS             203..>1318
                     /locus_tag="VIJ87_19765"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF013206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HEY5446655.1"
                     /translation="MLQNGGNAVDAGVATILAASVIEFSHFSFGGEVPILIKLKGGEV
                     VVIEGMGQAPMKATREFFVNRQKSSLSEGAATAPDSSRAQRGATDMPSIAGAKSGPIP
                     STGPLPATVPGVLGACITALDQFGTKTLAEVMQPAIELADGFPIDELRVEYIKTRSPI
                     FSQWPDAKRLFLPGGEVPKVGDLFVQADLARTLREIVRAERLAAKGSRNRHAGLLAAR
                     DYFYRGPIARRVGDYMQAHGGLIAAEDFARFEAKTGQPVRADYRGYQVYKAGFWTQGP
                     ALVETLNLLEGYDLKEMGHNSGKYIHTLAEALKLAMADRDRYYGDPNFAKIPMTELLS
                     KSYATLRRPLIDPFRASLAQQPGDPTNMKAILASAVQT"
BASE COUNT          307 a          357 c          351 g          303 t
ORIGIN      
        1 taacaattcg ccagccattt cagagaggtt gcccttataa atgtcatcag caaaacgctt
       61 cggactcgtc ctctgtcttg cattctcact tctacttgtt tccattcgac cttcaaccgc
      121 agatactttc cggcctgtcg tccgtggtaa acgcggcgtc gtagcaggtg gtcaacccct
      181 gtccgtcgag gctgggctca gaatgcttca aaacggtggc aatgctgtcg acgcaggagt
      241 cgcgacgatt ctggcagcgt cagtgatcga gttttcacac ttctcttttg ggggtgaagt
      301 accgattctg atcaaattga aaggtggcga agtcgttgta atagagggta tggggcaagc
      361 acccatgaaa gccacccgcg agtttttcgt aaaccgtcag aagtcatcac tgagcgaagg
      421 ggccgccacc gcgccagact cttcgcgagc tcagcgcgga gccactgaca tgccgagcat
      481 tgcaggtgcg aagtctgggc caatcccctc caccggccca ctcccggcaa ctgtcccagg
      541 ggtacttgga gcctgtatca ccgcactaga tcagttcgga accaagacac tcgcggaagt
      601 gatgcagccg gctatcgagc ttgctgatgg ttttccgatc gatgaactgc gtgtcgagta
      661 catcaagact cgctcaccaa tcttttcgca gtggccagat gccaaacgat tattccttcc
      721 tggaggcgag gtgccaaagg ttggcgactt gtttgtccaa gcagatctgg ctcgcacttt
      781 acgtgaaatc gtcagagccg aaagattggc agcaaaaggg tcaaggaacc gacatgccgg
      841 tctactagca gcgcgcgact acttttatcg tgggccgata gcgcgtcgag tcggcgacta
      901 catgcaagct catggtggat tgattgccgc cgaggacttt gctcgttttg aagcgaaaac
      961 aggtcagcca gtgcgtgctg actatcgcgg ctaccaggtc tacaaggctg gcttttggac
     1021 acaaggacca gcactcgtag aaaccttgaa cttgctcgaa ggctatgacc tgaaagagat
     1081 gggtcacaac tcgggcaagt atatccacac attggctgaa gcgttgaagc tggcaatggc
     1141 agaccgcgat cgctattacg gtgatccgaa ctttgccaag attccaatga ctgagttgct
     1201 ctcgaaaagt tatgcgactc ttcgccgtcc tttgatagac ccattcagag cgtctcttgc
     1261 tcaacagccc ggtgatccca ctaacatgaa agcgatcctg gcgagtgccg ttcaaacc
//
LOCUS       DATCGC010002083         1550 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_64191, whole genome shotgun sequence.
ACCESSION   DATCGC010002083 DATCGC010000000
VERSION     DATCGC010002083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1550
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64191"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1210
                     /locus_tag="VIJ87_19770"
     CDS             <1..1210
                     /locus_tag="VIJ87_19770"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEY5446656.1"
                     /translation="VELLKRTKAADQEMEVILITGHGTVEVAVEAIKEGAYDFITKPV
                     KKAQLLHAVEKASERQYLSRENKELRSQLSQTGMRRFVYASAEMRNIARMIEQVAAST
                     ATVLITGDSGTGKEVIADAIHSASPRRSRPLIKVSCAALPETLLEAELFGYEKGAFTG
                     ANARKEGRFELANGGTLFLDEIGEVTPAVQVKLLRVLQDQKFERLGGTRTIDADVRIL
                     AATNKDLQKEVEEKRFREDLFYRLNVINMRIPALRERKEDIQLLAMHFLKTYSDRNQK
                     KVEGFSEDAMLALTSYDWPGNVRELENAVERAVVFTSGTLVPLSVLPQNVSTFGDSKH
                     SLTFKIGTPLRELERKAIEITLQHARGDKNLAARLLGVATRTIYRHLEREAEEAAAEG
                     EQVQAGNSVH"
     gene            complement(1311..>1550)
                     /locus_tag="VIJ87_19775"
     CDS             complement(1311..>1550)
                     /locus_tag="VIJ87_19775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446657.1"
                     /translation="RDCYEDMTTQMMNRGLFPYRVGPLGFEKLNLKSTVFWDVVKDIK
                     TALDPHGIMSPGRYEPPSVADLSGTPILRTKNRLA"
BASE COUNT          394 a          384 c          461 g          311 t
ORIGIN      
        1 cgttgaactt ctcaaacgca ccaaggcggc cgatcaggaa atggaagtta ttctcatcac
       61 ggggcatgga actgttgaag tcgccgtgga agcgatcaag gaaggagcct acgacttcat
      121 tacgaaaccc gtgaagaagg ctcagctcct gcacgcggtg gagaaggcgt ccgagcgtca
      181 gtatctttcc agagaaaaca aagagctgcg ttcccagctg agccagaccg gtatgcgccg
      241 atttgtttat gcgagcgcgg aaatgcgcaa cattgcgaga atgatcgagc aggtggcagc
      301 gagtacggcg acagtgctca tcacgggaga cagcgggacc ggcaaggaag tcattgccga
      361 tgcgattcat tcggcttcac cccggcgaag caggcctttg atcaaggtca gctgcgccgc
      421 gttgcccgaa acgcttctgg aggcagaatt attcggatat gagaagggtg catttacggg
      481 cgccaacgcc cgcaaggaag gccggtttga actggcgaat ggaggcacgc tgttcctgga
      541 tgaaatcggg gaagtcactc ccgcagtaca ggtgaagttg ctgcgcgttc tccaggatca
      601 gaagttcgag cgtctgggag gaacccgcac gattgatgcg gatgtgcgga ttcttgccgc
      661 caccaacaag gacctccaga aggaagtgga agaaaagcgg ttccgggagg acctgttcta
      721 caggttgaac gtcattaaca tgcggattcc ggcgttacgc gaacgcaagg aggatatcca
      781 gcttctggcc atgcatttcc tgaagaccta ttcggacagg aatcaaaaga aggtggaagg
      841 cttcagcgag gacgcgatgc tggctctgac atcgtacgac tggccaggaa acgtgcgtga
      901 acttgaaaac gcagtagagc gcgcggttgt cttcacatcg gggacgctgg tgccactgtc
      961 tgtgcttcct caaaatgtct caacattcgg cgactcgaag cattcgctca cattcaagat
     1021 tggaacgccc ctgagagagt tggagcgaaa agcaattgag atcaccctcc agcatgcacg
     1081 cggcgacaag aaccttgcgg caaggcttct cggtgttgcg acacggacca tctatcgtca
     1141 tctcgaaaga gaagcggagg aagcggcagc cgagggtgaa caagtgcagg ccggcaattc
     1201 agtacactag atttcgggag ccatccggat ttgcggccgg ccgctatatc agtggaaacc
     1261 atatgaagaa gtacaatgac atcaactctt caaggggact gcgatccacc ttaagcgagc
     1321 cgatttttgg tccgaagaat gggagttcct gagaggtcag cgacagaagg cggctcgtat
     1381 cttccggggc tcatgatccc atgggggtcg agagccgttt tgatatcttt cacaacatcc
     1441 cagaagaccg tcgatttgag gtttaatttt tcaaaaccca gcgggcccac acgataagga
     1501 aaaaggcctc ggttcatcat ttgggtggtc atatcttcgt agcagtcccg
//
LOCUS       DATCGC010002084         2165 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_261606, whole genome shotgun sequence.
ACCESSION   DATCGC010002084 DATCGC010000000
VERSION     DATCGC010002084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2165)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2165)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2165
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_261606"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1162)
                     /locus_tag="VIJ87_19780"
     CDS             complement(<1..1162)
                     /locus_tag="VIJ87_19780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446658.1"
                     /translation="MENSISPLLYGQFLEFMFEGIKGGLHAELIRNRSFEEAANANGL
                     SRNWDRYPDDRNDDYALSFAWDDQFSYPQRNNEHSLSVRVGDGVITRHGVYQSRIPVR
                     AGIEYRGYIWLRTADYDGRVTVALESDVNAGQIYSASDLSQITKGDWRRYDFRLKPKT
                     SDPLSRFAILFQGKGTVRIDQVSLMPGDSAPGDVRHDVFEKIQLLKPAFIRWPGGNVA
                     QDYHWSWGVGPRDERVTWTNLSWKNEPEPSDFGTDEFVAFARSVGAEPSITVNVEGRG
                     ATVEEAAAWVEYCNGPATSKYGAMRAANGHPAPFAVKFWEIGNEIWGDWVRGHSDAET
                     YARNYNRYAKAMRAVDPSIKLIAVGDNNMKWNRTVLSAAGESIDYLAIHHYYG"
     gene            complement(1460..>2165)
                     /locus_tag="VIJ87_19785"
     CDS             complement(1460..>2165)
                     /locus_tag="VIJ87_19785"
                     /inference="COORDINATES: protein motif:HMM:NF018647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046556 - alpha-L-arabinofuranosidase
                     activity [Evidence IEA];
                     GO_process: GO:0046373 - L-arabinose metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-L-arabinofuranosidase C-terminal
                     domain-containing protein"
                     /protein_id="HEY5446659.1"
                     /translation="LNANLIDEHYYMAPQWFRENSGRYDNYPRTGPKVFAGEYAAQSV
                     GIASADNRNNWECALSEAAFITGLERNSDLVRMSSYAPLFGHVDAWQWTPNMIWFDNL
                     RSYGTPNYYVQKMFSVNKGTRRLAILIDDSPKNGQSELYASGSLDEGTGEVILKIVNT
                     GSASKEVQITLAGAKNVRQSGKALVLQTEDLKTENSLDHPTRLAPVEKQLQVSGNDFS
                     YSILPRSFTVLRIPLR"
BASE COUNT          496 a          603 c          539 g          527 t
ORIGIN      
        1 gtccgtaata atgatgaatc gctaggtaat cgatactctc gccggcggcg ctcagcaccg
       61 tgcgattcca tttcatgttg ttatcgccaa ccgcgatcaa tttgatcgac gggtcgacgg
      121 cgcgcatcgc tttcgcgtag cggttgtagt ttcgcgcgta cgtttcagcg tccgaatgac
      181 cccgcaccca gtcaccccag atctcgtttc caatctccca aaacttgacg gcaaatggtg
      241 ccggatgccc gttggcagca cgcatcgcgc cgtacttcga agttgcgggt ccgttacagt
      301 attcaaccca ggcagccgct tcttcgacag tcgcgcctcg tccctcaacg ttcaccgtga
      361 tcgaaggttc agcgcctaca gagcgcgcga aagcaacgaa ttcgtcagtg ccgaaatcgc
      421 tcggctctgg ttcgttcttc cacgagagat tggtccaggt aacgcgttcg tcacgcggac
      481 caactcccca tgaccagtga taatcctgag ctacgttgcc gccgggccaa cgaatgaatg
      541 caggtttgag cagctggatc ttttcaaaca cgtcgtgtcg cacgtcccct ggcgccgagt
      601 caccgggcat cagcgacact tgatcgatcc tcacggtgcc ttttccttga aagaggatcg
      661 caaaacgtga aagtggatca ctcgtcttcg gctttagtct aaaatcataa cgacgccaat
      721 ctcctttcgt gatctggctg agatcggaag cactgtaaat ctgaccggca ttcacatctg
      781 actcaagcgc aactgtaacg cgcccatcgt aatctgccgt ccttagccag atgtaacctc
      841 gatattcgat tcccgcacgc acaggaattc gcgattgata gaccccgtgc cgagtaatga
      901 cgccgtcgcc gaccctgacg ctcagtgagt gctcgttgtt tcgctgcgga taggagaatt
      961 gatcgtccca cgcgaaggag agagcgtaat cgtcatttcg atcgtctgga taacgatccc
     1021 agtttcgcga aagaccgttg gcgttagccg cttcttcaaa actgcgattc cgaattagct
     1081 cggcgtgcag gccaccctta attccttcga acatgaactc gagaaactgt ccatagagca
     1141 ggggactaat gctgttctcc actttgcggg catcaatgga gatggaggct gttgaattag
     1201 actgggccga gatgctcgtg acttgtgaga cgcagatcac aacaagacac agacacctca
     1261 gccacagtct tgatgtcttt tgttgtagtc ggcgatttac cgttgactcc acggttctga
     1321 aagggtcact taataacgat gaggtcagta ccgaaacgcg gtagcgccgg ctccgcttga
     1381 aaattgttgc gcaaaattgt tgcatgagcc ggcgctacca cgtctcggta ctgactccat
     1441 cgtcacgagg ttaaacgaat cacctcagtg gaatgcgcag cactgtaaac gaacgcggta
     1501 agattgaata tgaaaagtca ttgccagaga cttgcaactg cttctcaacc ggcgcgagtc
     1561 gagtcggatg atccaaactg ttttccgttt tcaagtcttc agtctgcaaa accaatgctt
     1621 ttccggattg ccgaacattt ttcgcaccag ccaatgtgat ttgtacttcc ttcgacgcgg
     1681 aaccagtatt cactatcttt agaattactt ctccagtgcc ttcatcaagc gacccacttg
     1741 cataaagttc agattgtccg ttcttcggtg agtcgtcgat caagatcgct aaccgccgcg
     1801 tacccttgtt cacactgaac attttttgga cgtagtagtt tggcgtcccg taggagcgta
     1861 ggttgtcaaa ccagatcatg ttcggcgtcc attgccaggc atctacatga ccgaacagcg
     1921 gcgcgtagga cgacatccgc acgaggtcgg aattgcgctc aagcccggta atgaaagcgg
     1981 cttctgataa tgcgcactcc cagttgttgc ggttatcagc gctcgcgatg ccgacactct
     2041 gcgctgcata ttcgcccgcg aaaactttcg gaccagtgcg tggataattg tcataacgtc
     2101 cggaattctc ccgaaaccac tgcggcgcca tgtagtagtg ctcgtcgatc aggttggcat
     2161 tcaac
//
LOCUS       DATCGC010002085         1092 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_160855, whole genome shotgun sequence.
ACCESSION   DATCGC010002085 DATCGC010000000
VERSION     DATCGC010002085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1092
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_160855"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..622
                     /locus_tag="VIJ87_19790"
     CDS             <1..622
                     /locus_tag="VIJ87_19790"
                     /inference="COORDINATES: protein motif:HMM:NF014653.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Ldh family oxidoreductase"
                     /protein_id="HEY5446660.1"
                     /translation="SYGWQAADQGMIGICWTNTLPNLPPWGGTKPTLGNNPLVIAVPR
                     VEGHVVLDMAMSQFSFGALETYRKRDEQLPVVGGFDGKGQLTSDPGEIEASGRPLPIG
                     YWKGSGLSLMLDMVAALLSSGNAVFQIPPEVPKETKLSQVFIALSPLKDDREHTLNGI
                     LAFLRTASSDESGVRYPGERTLEIRRQSIDQGIPVDEDIWNQIIAL"
     gene            774..>1092
                     /locus_tag="VIJ87_19795"
     CDS             774..>1092
                     /locus_tag="VIJ87_19795"
                     /inference="COORDINATES: protein motif:HMM:NF013567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEY5446661.1"
                     /translation="MFNFGIIGGGGISDTHARAASEIDGVGVSAFFGGNKEKVERLAS
                     KYGGMPYDNLDAFLSHKPMDAVIIGSPSGLHSQEGIECARRGLHVLVEKPIDVTIEKA
                     DSLI"
BASE COUNT          277 a          271 c          291 g          253 t
ORIGIN      
        1 tagctacggt tggcaagcag cagaccaagg gatgatcggg atttgttgga ctaatacgtt
       61 gccaaatctt ccgccctggg gaggaacgaa acctacgttg ggcaacaatc cacttgtaat
      121 tgcagtgcct cgcgttgaag gacacgttgt gctcgacatg gcaatgtcgc aattctcttt
      181 tggcgctctc gagacctaca gaaaacgcga cgagcagtta ccagtagttg gcggattcga
      241 cggaaagggg caattgactt ctgaccctgg cgagatcgaa gcgtcgggtc gtccactgcc
      301 gatcggatat tggaaaggct ccgggttgtc gttgatgctc gacatggtgg ccgcgttgtt
      361 atccagtgga aacgcagttt ttcaaatacc gccggaagta ccgaaagaaa cgaagctgtc
      421 acaagtgttc atcgcattgt ctccactaaa agacgatcgc gaacacacac taaatggcat
      481 actggcgttt ctacgaacag catcaagcga cgaatcgggt gtgcgctacc ctggagagcg
      541 cacactcgag atacgaagac agagtattga tcaaggcatt ccagtcgacg aagatatttg
      601 gaaccagatt atcgcgctct gatattggcg gctccctgga gtgcgatact gtgtccgata
      661 tgcttcagct tgtcgcttgg accacactag gacgcactta tttgagatcg cgacaagcta
      721 aagcatatcg gacattagac cccagtccct gaaggcatcc aatttcaaac accatgttta
      781 atttcggcat cattggtggc ggtggaatta gcgacacgca cgcgcgcgcc gcatcggaga
      841 tcgatggcgt cggtgtctct gcattctttg gtggtaacaa agaaaaggtc gagcgcctcg
      901 ccagcaaata tggtggcatg ccttacgata acctcgatgc atttttgtca cacaaaccga
      961 tggacgccgt catcatcggc agtccgtcag gtctgcattc gcaggaagga atcgaatgcg
     1021 cccgtcgcgg actccatgtg cttgtcgaaa agccaatcga tgtcaccatt gaaaaggctg
     1081 attccttaat tt
//
LOCUS       DATCGC010002086         1155 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_261676, whole genome shotgun sequence.
ACCESSION   DATCGC010002086 DATCGC010000000
VERSION     DATCGC010002086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1155)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1155)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1155
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_261676"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..473)
                     /gene="folK"
                     /locus_tag="VIJ87_19800"
     CDS             complement(<1..473)
                     /gene="folK"
                     /locus_tag="VIJ87_19800"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR01498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003848 -
                     2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
                     diphosphokinase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HEY5446662.1"
                     /translation="MLQNAYVSLGSNLGDRAGYLLLAVRGMFAAGLDVIRLSSIYETQ
                     PVEYTNQPTFLNMVAELRGTTLPPPEQMLARMLRIEFALGRIRDVHMGPRTIDLDLLI
                     YRDELRNTEFLRLPHPRMHLRRFVLEPLNELVPTLEHPVLKQTIGGLLESSEDLSA"
     gene            683..>1155
                     /locus_tag="VIJ87_19805"
     CDS             683..>1155
                     /locus_tag="VIJ87_19805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446663.1"
                     /translation="MSQLLTLFWLKWKLLRNSLRSRKAVVNQAASIFGMAIGLALALG
                     VAIGLGFASYFLSKPGAMTEAFRQGASREGFPIQSTEFIFFSILSFIYLMWATVPLSI
                     GGGKQFDAGRMLMYPISLRKLFAIDFLSELTAIQSVFAIPAIVAMSLGSGLGSGNP"
BASE COUNT          266 a          270 c          316 g          303 t
ORIGIN      
        1 gccgacaaat cctcggagct ttcgagtaag ccgccaatgg tttgtttcag aaccggatgt
       61 tcgagagtcg ggacaagctc gttaagtggc tcgagtacaa agcggcgcag atgcattcgt
      121 ggatgaggga gcctgagaaa ttcagtattg cgcagctcgt ctctgtagat aagcagatca
      181 agatcgattg ttcgagggcc catatgaacg tcgcgaattc tgccgagagc aaactctatc
      241 cgcagcatcc tggcgagcat ttgttcaggt ggtggcaagg ttgttcctct caattcagcc
      301 accatattta aaaaggtcgg ttggtttgtg tactcgactg gttgagtttc gtagatactc
      361 gaaaggcgga tcacatcgag tccagcagca aacattcctc tgactgccaa cagcagatac
      421 ccggcgcgat caccgaggtt ggaaccgagg gagacataag cgttttggag cattcaagtg
      481 gtccgatatg ctttagcttg tcgatgcccc aggagatcgg gctcgacatg ttgagagtag
      541 tgacgtgact atcatcgttg gcgataaagc tgtcatcgcg ctgacaagtc gggttagact
      601 tatcgtccca ttgattaatg actcactaaa gcgctggcaa gacgtttaga cgtacacacg
      661 acaagctaaa gcatatcgga caatgtctca actactaact ctcttttggc tgaagtggaa
      721 actcttgcgg aactctcttc gctcgaggaa ggcggttgtg aaccaggcgg cgtcgatctt
      781 tggaatggct attggtttgg ctttggcttt gggcgtagcc attgggttag gtttcgcttc
      841 ctactttcta agcaagcccg gcgctatgac agaggcattt cgacagggcg cttcccgcga
      901 aggttttccg attcagtcga ctgaattcat tttcttttcg atcctctcgt ttatctattt
      961 gatgtgggcc acggtgccac tcagcatcgg aggtgggaaa cagttcgacg ccggaagaat
     1021 gctgatgtac cccatcagtt tgcggaagct gtttgccatc gattttctga gcgagctcac
     1081 agcgatccaa tccgtttttg cgatacctgc gatcgtcgcg atgagtctgg gttcaggact
     1141 cggatcagga aatcc
//
LOCUS       DATCGC010002087         1735 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_64312, whole genome shotgun sequence.
ACCESSION   DATCGC010002087 DATCGC010000000
VERSION     DATCGC010002087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1735)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1735)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1735
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64312"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(125..499)
                     /locus_tag="VIJ87_19810"
     CDS             complement(125..499)
                     /locus_tag="VIJ87_19810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446664.1"
                     /translation="MDVTENTKRVAQQALDYLRMYPERHDQNNFVSWEDASVEDLRHF
                     TGQVNLCDTTMCVAGTVQWQQEGQIVLSAVDYAAGDYLGLDRYEWSSLFYDTNNEQAI
                     DMLTAIANGDADKFHDLRRELL"
     gene            complement(587..659)
                     /locus_tag="VIJ87_19815"
     tRNA            complement(587..659)
                     /locus_tag="VIJ87_19815"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(624..626),aa:Arg,seq:acg)
     gene            complement(1026..1096)
                     /locus_tag="VIJ87_19820"
     tRNA            complement(1026..1096)
                     /locus_tag="VIJ87_19820"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1062..1064),aa:Gly,seq:tcc)
     gene            complement(1462..>1735)
                     /locus_tag="VIJ87_19825"
     CDS             complement(1462..>1735)
                     /locus_tag="VIJ87_19825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446665.1"
                     /translation="FVRRLGYAYSKGMGYYQLTKTENIQPQKSIIVVEKSTGKAYGGQ
                     NARDLIGLPSHTVRVKPDYNPDYDIFVQSTSINRNLMPNTRLLIKA"
BASE COUNT          446 a          442 c          409 g          438 t
ORIGIN      
        1 ccggtggcga atacgtctcg caaggcgtcc agagcgtcgt cgtcgtcaaa tgcttcaatc
       61 tcgcaccaaa cggaaacctt aaacttgtac ttttccatgc ttcaattgta gcatagattg
      121 ggtcttagag aagttctcga cgcaaatcgt ggaacttgtc tgcgtcaccg ttggcaatgg
      181 cggtaagcat gtcaatggcc tgctcgttat ttgtgtcgta aaacaacgac gaccattcgt
      241 accggtccag accaagataa tctcccgcag cgtagtcaac ggcactgaga acaatttgac
      301 cttcctgctg ccattgaacc gtaccggcta cgcacatggt cgtgtcacac agatttacct
      361 gaccagtgaa gtgtcgcaaa tcttctacag atgcgtcttc ccaactaacg aaattgttct
      421 ggtcgtgacg ctctgggtac atacgaaggt aatcgagagc ctgctgggca acgcgcttgg
      481 tgttttctgt tacgtccatt acttactcct agataggccg aaccaacgtg gtccgtgttt
      541 gtaacaatac ttttctggat atgcgataaa gatgttaatg ttcatgtacc ctcgacagga
      601 ttcgaacctg cgacctcttc gtccgtagcg aagcgttcta tccactgaac tacgagggca
      661 tgtattcgga tatggtacga agtcgatagg acaccagtcc caaataggca ggaatcgaac
      721 ctggcctcgc taactttggc aacgataaac gactatcatc gacccgaatt aagtattaaa
      781 ttagcaggaa tggcaaggcc agtttgtgtc taccctggcc tcagatggag cggcgacagc
      841 gccgaccagt ccaagtgcca ttacagcggc ggcaagcgcg ccagcaattc tcttcattgc
      901 aacctcccgt gataaggttg ggcataattg taatcggaat ttaagtctac tttgcgcttg
      961 gaggcgcacg tgctatttac accaataggg aagtccccat agataaccga tatacttcgg
     1021 cccagagcgg gtacggagaa tcgaactccg gtaatctgat tggaagtcag gagcactacc
     1081 attgtgctat acccgcgtag cgccactggg acttggaccc agttttctcg ggcttcaacc
     1141 gagcgcatat ccatacatgc tctgacgcct tggctgtacc cggccccaca tttgctcgat
     1201 gaggccgggt acaatgcaat tgtaacaggt cagactgagc gtgtcaagtc tacgacccac
     1261 tcttctaact tgctgtcaat gtaataaaga acttggtcct ttatctcaaa tttaccgtca
     1321 cgatggtcgt acaggtcgcc ctgtctgaca ccccaataaa ccgggaccct cacaaaagtg
     1381 ctccaattac tagtgcacac aagagcaata gcacaaacag gaataatccg aagtctgcta
     1441 gaaactcaat tatgttgtct atcatgcctt gataagcagt ctcgtgtttg gcatcaggtt
     1501 acggttaatc gaggttgact gaacgaaaat gtcgtagtcc gggttgtaat cgggctttac
     1561 ccgtaccgtg tggcttggta ggccaataag gtcacgagca ttctgaccac cataagcctt
     1621 accggtagac ttctctacta cgataataga cttctgtggc tgaatgtttt cagtctttgt
     1681 caactggtag taacccatac ccttggagta ggcgtaaccc aggcgacgaa caaag
//
LOCUS       DATCGC010002088         1026 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_261679, whole genome shotgun sequence.
ACCESSION   DATCGC010002088 DATCGC010000000
VERSION     DATCGC010002088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1026)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1026
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_261679"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..879
                     /locus_tag="VIJ87_19830"
     CDS             <1..879
                     /locus_tag="VIJ87_19830"
                     /inference="COORDINATES: protein motif:HMM:NF015094.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AarF/UbiB family protein"
                     /protein_id="HEY5446666.1"
                     /translation="ALADELFRAYLKQILIDGLFHADPHPGNVFLTDDDCIALLDLGM
                     VGHVTRTFQDNLLRLLLAISEGRGELAAESAIKMGEAKEGFDRPGFTRRIVDLVAENR
                     DAVLSRLNAGKVTLEITKISADCWFRLPSEFTMVAKSLMNLDKVVYTLDPGFDPNAVI
                     RDEANEILQRNVLRSLSPSSLMAGAVDVKEFAEKLPLRVNRILDEIGNNNLRIKVDAI
                     DEKVVLDGLQKIANRITLGLVVAALIVGAALLMRVETPFRIWGYPGLAMILFLLAAAA
                     GLVLAFNIVFHDKKTD"
BASE COUNT          244 a          249 c          274 g          259 t
ORIGIN      
        1 gcgttagctg atgaactgtt tcgcgcctac ctgaagcaga ttttgattga cgggctattt
       61 catgccgatc cacatccagg aaatgttttc ctcacagacg atgactgcat cgcgctgctc
      121 gatctgggaa tggtgggcca cgtaactcga accttccagg acaatctctt gcgactcttg
      181 ctcgcgatta gcgaagggcg tggcgaattg gcggccgagt ctgcgatcaa gatgggtgag
      241 gcaaaagaag gatttgaccg tccggggttt acccgacgaa ttgttgacct ggttgctgaa
      301 aaccgcgatg cggtgctgag tcgactcaat gccgggaaag tcacccttga gatcacaaag
      361 atttctgcgg attgttggtt ccgtctcccc tcagagttca cgatggtcgc caagtcgttg
      421 atgaatctcg ataaggttgt ttacacactt gatccaggct tcgatcccaa cgctgtaatc
      481 cgagacgagg cgaacgagat tcttcagcga aatgtcctac gaagtttgtc gcctagtagt
      541 ctgatggccg gggctgttga cgtaaaagag tttgctgaaa agcttcctct gcgtgtgaat
      601 cggatcctgg acgaaatcgg aaacaacaac ctgcgaatca aagttgatgc gatcgatgag
      661 aaggtagtcc tggatggttt acagaaaatc gctaatcgaa tcacgttagg actggtagta
      721 gccgcactga ttgtgggcgc ggcactgctg atgcgcgtag aaaccccgtt tcgtatatgg
      781 ggttatccag ggctggcgat gatcctcttt ctccttgctg ccgcagccgg tttggtactg
      841 gccttcaaca tcgtcttcca cgacaaaaag accgactgag tttcagatct cagatctgca
      901 ctgcgctcaa cccaaactcc agttagttag ccccagtgca gtcaaaggtc cgctccagca
      961 aatctgagat ctgagatctg agtctgagat ctgagattcg attttgctcg gtttaaaacc
     1021 tcaaga
//
LOCUS       DATCGC010002089         1590 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_129745, whole genome shotgun sequence.
ACCESSION   DATCGC010002089 DATCGC010000000
VERSION     DATCGC010002089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1590)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1590)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1590
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129745"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..490
                     /locus_tag="VIJ87_19835"
     CDS             <1..490
                     /locus_tag="VIJ87_19835"
                     /inference="COORDINATES: protein motif:HMM:NF024997.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HEY5446667.1"
                     /translation="FRLALSFRDVEEMLAMHSVTLSYETVREWCLKFGQSYANALRRK
                     SPRSGVRRHLDEVFLKINGPLHCLWREVDQDADFLDILVQSRRNKKAAKKFFSQIIKR
                     IAVCSAGGHHRQAEQLQWAAGAEVIPSVEHFQQKYQNNRAENSHQPTRLRERVMWNQK
                     SS"
     gene            852..>1590
                     /locus_tag="VIJ87_19840"
     CDS             852..>1590
                     /locus_tag="VIJ87_19840"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY5446668.1"
                     /translation="MGPTLKRINSDAKKKARIEADQKEDKERAPDEEDVVRVDTSLVV
                     CDVLVMDKQGKPVQGLTQSDFIVTEDNKQQEIGIFSLGDDAAIPRSIVLIIDYSGSLS
                     PYIQMSVEAAKELVDKLGPRDTMAIVADDLSLLADFKGDKAELKQTLESLKEKAKGKA
                     ARHGWYEGHSLQFSALLATLREMFDDEDVRPIIIFQTDGDELEILPPVKEPYYAAIAR
                     PFSLKDVYAEVERSRATIYSVIPGVRFA"
BASE COUNT          409 a          365 c          431 g          385 t
ORIGIN      
        1 ttttcgctta gccctgagct tccgcgatgt ggaagaaatg ttagcgatgc acagcgtgac
       61 cctcagctat gagacagttc gagaatggtg tcttaagttc ggccagagtt atgccaacgc
      121 cttgcgacgc aaatccccgc ggtccggcgt caggcggcac ctggatgaag tgttcctcaa
      181 gatcaatgga ccccttcact gcctctggcg tgaagtggat caggatgccg atttcttgga
      241 tattttggtc cagagtcgga ggaacaaaaa ggcagctaag aagttctttt cgcaaattat
      301 taaaaggatt gcagtatgtt ccgcgggtgg tcatcacaga caagctgaac agctacagtg
      361 ggcggcggga gctgaagtga taccgagcgt cgaacacttt cagcagaagt atcagaacaa
      421 tcgcgccgag aattcacatc agccaaccag gttgcgggag cgcgttatgt ggaatcagaa
      481 gtcaagctaa tatgtaatcg ttcccgggtc gctttggttt agtaatctgg actacagttg
      541 tttcggcatt cgtccatcgg cagctgttag tatcggttaa ccgcgtagac aagtttccga
      601 gcgccgcaac gccgttttct acagcggatc tctcttcatc gctcagtgga atcttgtatc
      661 attcgcaaca gattcgttcg tccttccatc atgtcggcgc cgtggtacag ttgagggact
      721 tctaagcgat gcgtgacaaa gtatctctat gtctagcttt agtaatcctg acgctcattt
      781 acagcgcctc cttcttaggt caatctgtcc tggcgcaatc ctcagatagg gagaatccgc
      841 ggagcaggga tttgggacca actcttaagc ggatcaattc cgacgcgaag aagaaagctc
      901 gcatcgaagc tgatcaaaaa gaagataagg aaagggcccc ggatgaagaa gatgtggtgc
      961 gagtggacac gtcactcgtc gtctgtgatg tgctggtaat ggataagcag gggaagccgg
     1021 tgcagggtct gactcaaagc gatttcattg taactgaaga taacaagcaa caggagatcg
     1081 gaattttctc gctcggcgac gacgcggcaa tcccgcgctc gattgtcctg attattgact
     1141 acagcggcag cctttcgcct tacatccaga tgagtgtcga ggcagctaag gaacttgttg
     1201 ataaacttgg tcccagagat acgatggcaa tagtcgcgga cgacctctcg ttgctggcag
     1261 acttcaaggg agataaagca gagcttaaac agacccttga atcattaaaa gagaaggcta
     1321 aaggaaaggc ggcgaggcat ggctggtacg aaggacacag cctgcaattt agtgcgcttc
     1381 tggcaactct tcgagaaatg tttgacgacg aagatgttcg tccgattatt atttttcaga
     1441 ctgacggtga tgaattggaa atacttccac ctgtgaaaga accttactat gcggctattg
     1501 caaggccctt tagccttaag gatgtctacg ccgaagttga aagatcgcgg gcgacgatat
     1561 actcagtgat tcccggcgtt cgattcgcag
//
LOCUS       DATCGC010002090         1408 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_495089, whole genome shotgun sequence.
ACCESSION   DATCGC010002090 DATCGC010000000
VERSION     DATCGC010002090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1408)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1408)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1408
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_495089"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            138..214
                     /locus_tag="VIJ87_19845"
     tRNA            138..214
                     /locus_tag="VIJ87_19845"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:172..174,aa:Ile,seq:gat)
     gene            227..303
                     /locus_tag="VIJ87_19850"
     tRNA            227..303
                     /locus_tag="VIJ87_19850"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:261..263,aa:Met,seq:cat)
     gene            311..386
                     /locus_tag="VIJ87_19855"
     tRNA            311..386
                     /locus_tag="VIJ87_19855"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:344..346,aa:Ala,seq:tgc)
     gene            654..>1408
                     /locus_tag="VIJ87_19860"
     rRNA            654..>1408
                     /locus_tag="VIJ87_19860"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          400 a          286 c          384 g          338 t
ORIGIN      
        1 taacaaggtt gttatctcag gcctcgcata ttcagttttc agatatcagc aatttagatc
       61 ttttacaaaa gttttctgaa ttgcggagca aagcgcgctt taggttcttt atcagaggcg
      121 ctttaaacct aacttgaggg cctgtagctc agttggttag agcgcacgcc tgataagcgt
      181 gaggtcggta gttcgagtct acccaggccc accattaacg gcttatcgcg gggtggagca
      241 gtccggtagc tcgttgggct cataacccaa aggtcgcagg ttcaaatcct gtccccgcaa
      301 ccaatttttt ggggatgtag ctcagttggg agagcacctg atttgcattc agggggtcgc
      361 aggttcgact cctgtcatct ccaccagatt tttttggcaa cggccaaagg cgagtttagc
      421 atcttagtca gattcgtaaa ttacggatca gttgctgcag gaaaccaagc cttctttctt
      481 aagaaggttt tgttttcgac agcagtaaag tcgaagtact tgatatttga caactgaata
      541 tttgtagatc aactacaagt tgcacaattg ctcattaatt aatagttaga aaaaagagtg
      601 atctgaaaga acttgaaaac aagctgtagt ttttgcttgt agacaagttt tatggtcaag
      661 ctactaaggg caaacggtga atgccttggc actttgaggc gatgaaggac gtggaaagct
      721 gcgatatgcg acggtgagga gcactcatcc attgaaccgt cgatctccga atgggggaac
      781 cctacatact actctctgaa ttcataggag agaaagagcc aacctgggga agtgaaccat
      841 ctcagtaccc agaggaaaag aaaacaacat gtgattccgc tagtagcggc gagcgaacgc
      901 ggaacagcct aaaccagttg ggcttgctca attggggtcg tgggaccgag cacaacggca
      961 gaagtagaat taacggaagg gagtggaaaa tcccaccata gagcgtgata gtcgcgtatg
     1021 tgaaaattcg aacctgttag cacggcaccc gagtaatgcg ggacacgagg aatcttgcat
     1081 gaatttgccg ggaccatccg gtaaggctaa atactccaaa gtgaccgata gtgaaccagt
     1141 accgtgaggg aaaggtgaaa agaaccccgg tgaggggagt gaaatagtac ctgaaaccgt
     1201 ttgcttacaa gcagtcggag gtcgcaagac tgacggcgtg ccttttgcat aatgagccgg
     1261 ctagtaaatg tcacaggcaa ggttaaatga taattgagcc gaagcgaaag cgagtcttaa
     1321 tagggcgttt agtctgtggt atctggacgt gaaacgggat gatctaggca tgggcaggat
     1381 gaagcgtggg taacaccacg tggaggtc
//
LOCUS       DATCGC010002091         1752 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_64392, whole genome shotgun sequence.
ACCESSION   DATCGC010002091 DATCGC010000000
VERSION     DATCGC010002091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1752)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1752)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1752
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64392"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..463)
                     /locus_tag="VIJ87_19865"
     CDS             complement(<1..463)
                     /locus_tag="VIJ87_19865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004211302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TCP-1/cpn60 chaperonin family protein"
                     /protein_id="HEY5446669.1"
                     /translation="MPAKEVKFSEEARNAMLQGVNVLANAVRVTLGPKGRNVVLGKKF
                     GSPVITKDGVTVAKEIELSDKYENMGAQMVREVAVKTNDKAGDGTTTATVLAQAIFRE
                     GVKNVAAGANPMALQQGIQKATELVVAELERMSKKVKGKEELTNVASVSANN"
     gene            complement(510..1160)
                     /locus_tag="VIJ87_19870"
     CDS             complement(510..1160)
                     /locus_tag="VIJ87_19870"
                     /inference="COORDINATES: protein motif:HMM:NF013212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000774 - adenyl-nucleotide exchange
                     factor activity [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HEY5446670.1"
                     /translation="MIRRDGRHSNDEAENPVRVTDRRRIYLDPEGAEQVNQEAEQPNL
                     KPTYVEELEAKTKAAEQQVQEVRARFDQLRQQLQRETDETRQRLNRSANERAAGEKAN
                     FIASLLPVMDGLDLAIQATTENASREAILEGIRGIATSFQNALTNAGVEPVPAVGEVF
                     NPELHEAVDTVDTDLELDGKVVGEYTRGFRIGERLLRPARVQVGRSVEEQANIANE"
     gene            complement(1188..1634)
                     /locus_tag="VIJ87_19875"
     CDS             complement(1188..1634)
                     /locus_tag="VIJ87_19875"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HEY5446671.1"
                     /translation="MSQQWNPLHDLMMLQDRMNRLFEDATERRARRDADAGDTFERVD
                     WTPASDIYETETGYLIAIDLPGVDRDGVEIDIDDNRLVIKGTRVVEESAKQRTERPGG
                     KFLRTFTVPGSVDQSQIGAEYKDGVLQIRLPKRKEQKAQRVEIKIS"
BASE COUNT          348 a          480 c          404 g          520 t
ORIGIN      
        1 cgttgttggc agaaactgat gcaacattgg tcaattcttc tttgcccttg accttttttg
       61 acattctttc cagctcggcc actaccagct ccgtcgcctt ttggattccc tgttgcaaag
      121 ccatcggatt ggcgccggca gcgacgtttt ttaccccttc gcggaagatc gcctgggcca
      181 ggacggtcgc agtagtggtc ccatcaccag ccttgtcgtt agtttttacc gcgacttcac
      241 gcaccatttg tgcgcccatg ttctcgtact tgtctgataa ctcgatctct ttcgccacgg
      301 tgactccgtc tttggtaatc acaggcgaac caaacttctt cccgagaaca acgttgcgac
      361 ccttaggccc aagcgttacc cggactgcgt tggccaatac gtttacacct tgaagcatgg
      421 cattgcgcgc ttcctcacta aacttcacct cttttgcggg cactcgatgt gtctccttct
      481 cactaaatta gcgcagaaca gattcgcttt tattcgttag caatgtttgc ctgctcttca
      541 acactacgac ctacctgaac tcgagctggt cgtagcaaac gttcaccaat acgaaaaccg
      601 cgagtgtatt ccccaactac cttgccatcc aactcaagat cggtgtcgac agtgtcgaca
      661 gcttcatgta gctcaggatt gaaaacttca ccaactgcag gaactggttc aactcccgcg
      721 ttggtcaacg cattttgaaa gctggtcgcg ataccgcgaa tgccttcgag gatggcttca
      781 cgagacgcgt tctcagtagt tgcctggatt gctagatcaa gcccgtccat aacgggaagt
      841 agcgatgcga taaagtttgc cttttcacct gcggctcttt cgttcgccga acggttcaag
      901 cgttgtctgg tttcgtctgt ctcacgctga agttgctgac gaagttgatc aaagcgtgct
      961 cgaacttctt gaacttgttg ttcggcagct tttgttttcg cttcgagttc ttcgacatac
     1021 gtgggtttga ggtttggttg ttcagcctcc tggtttacct gctctgcgcc ttcaggatcg
     1081 agataaatgc ggcgtcggtc ggttactcgg actgggtttt ctgcctcgtc attcgagtgc
     1141 cggccatctc ttctaatcat cacctgcttc ccccattgaa cgccaaatta ggaaattttg
     1201 atttctacgc gctgcgcctt ttgctctttg cgtttcggca atcgtatctg caatacgccg
     1261 tccttgtact cagcgccaat ctgactttga tcgactgaac ctggaaccgt aaaagtgcga
     1321 agaaattttc cgccgggtct ttccgttcgt tgcttggctg attcttcaac cacgcgtgtt
     1381 cccttaatga ccaatcgatt atcgtcaata tcgatttcga ccccgtctcg atcaacgcct
     1441 ggtaaatcaa tcgcgattaa ataaccagtt tcagtttcgt agatgtcaga cgcgggagtc
     1501 cagtcaacac gttcgaaagt gtctccggca tctgcgtcgc gtcgcgccct gcgttctgta
     1561 gcatcttcga aaagtctatt cattcgatcc tgcagcatca ttaggtcgtg aagtgggttc
     1621 cattgttgag acatgcttct atgtttctcc gactcagttg gctaatcatt gattaggcag
     1681 cggcgactgc ggagtcttgt ttgaactcca tagtgtcgcc gctcgctgat agtttgagcg
     1741 tttggcctgg ct
//
LOCUS       DATCGC010002092         1927 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_365986, whole genome shotgun sequence.
ACCESSION   DATCGC010002092 DATCGC010000000
VERSION     DATCGC010002092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1927)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1927)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1927
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_365986"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..555
                     /locus_tag="VIJ87_19880"
     CDS             <1..555
                     /locus_tag="VIJ87_19880"
                     /inference="COORDINATES: protein motif:HMM:NF013118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HEY5446672.1"
                     /translation="ETLIKRVVETDLPTVYGRFRAVAYENIMNGDVHLAMVMGNVAGD
                     EPVLVRVHTENVTCDMFGSLIDDTGFQLHTALEKISAAARGVVLYLRQREHSLDLVNQ
                     LRTYARMQESGLSKREASLQTGYGLDRDYGVGAQILHDLGLRHILLLSNHPPKVAALE
                     GFELSVVGNVPLGEPAALKDQQAP"
     gene            807..>1927
                     /locus_tag="VIJ87_19885"
     CDS             807..>1927
                     /locus_tag="VIJ87_19885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446673.1"
                     /translation="MSVDDNRKTPGDGAERPEPPKPTLRRRWRYFSRRHAFLAGLIIG
                     VGILALLVVALLAYRFGYVDRYVAGQITNTFANYGIRATIREFHSSIPPRTVEMSGVE
                     LYDAATGEHLGKIDRLAATIRIADLYALNLRRNINLEDLKIEGFEAWVKFDEQGRSNF
                     RNVHIPPPEPNARILFAYSTAHIEIKNGVVHYGDLKHEISGEARNLKATIQPDDPNQP
                     VESRMNTVVFGMTDSTFTYDGRPINNIDLDARARINQTRAEIQELTLKSPLAEAHLTG
                     TMDDWRALRYQMNITSSVDLTQVSDTFETDATLRGIGNFSGTVTGEGDQFKIQGGIKS
                     DALAADGVRLQGLNVTTTGSVHGKSYEINGKAVADLLTSG"
BASE COUNT          480 a          518 c          494 g          435 t
ORIGIN      
        1 gagacattga tcaagcgagt tgtcgaaact gatctcccta ccgtctatgg tcgctttcgg
       61 gcagtcgctt acgaaaacat tatgaacggt gatgtgcacc tcgcgatggt gatgggcaac
      121 gtagccggag acgaaccagt gcttgttcga gtacatactg aaaacgtaac ctgcgatatg
      181 tttggttcgc tgatcgacga cacagggttt caactacaca ccgcactcga gaagatttcg
      241 gcggcagctc gtggagttgt tctttatctc cgacaacgtg agcacagcct ggatctcgtg
      301 aatcaattgc gcacatacgc tcgaatgcag gaaagcggct tgagtaaacg cgaggcgagt
      361 ttgcaaacag ggtatggact tgatcgtgac tacggcgtag gggctcaaat tctccacgat
      421 ttaggcttgc gacatattct tctgctttcg aatcatcccc ccaaagtagc ggcactcgaa
      481 ggttttgagc tctcggttgt tggcaatgtc cccctgggcg aacctgctgc tttgaaagac
      541 cagcaggctc cctgatttca ctgagcaact tcgctgagtg cccgaccatc cgacaccctc
      601 agctagtccg atatgcgtta ccttgtcgat gactgaagtt gcaaatcagc cacgagtaaa
      661 catgggacga tacggaatac agtctaaggc gcaatttgga ccaacagttg ctacgtgatc
      721 acccaagcac gtcataggct ctttcaactt taggtctctc cctctagaat tcgaaaactc
      781 cctcggtcgc ttggcgacta ctggttatga gtgtagacga taatcgcaaa actcccggcg
      841 atggcgcaga acggcctgag ccgccgaagc caacgctcag aagacgctgg cgttacttct
      901 cgcgccgcca tgcttttctg gcgggcctca tcattggtgt gggaattctg gcgctgttag
      961 tcgttgcgct cttggcgtat cgcttcggct atgtcgatcg atacgtggcc ggccagatca
     1021 caaacacttt cgcaaattac ggaattcgcg cgaccatcag ggagtttcat tcgtcaattc
     1081 caccacgtac cgtcgagatg tcaggggtcg aactctatga tgctgctacg ggagagcacc
     1141 tcggcaagat cgacaggctg gcggcaacaa tcaggatcgc agatctctac gcactgaatc
     1201 tcagacgcaa catcaacctt gaggatttga agatcgaagg tttcgaagcg tgggttaagt
     1261 ttgacgaaca aggtcgctca aactttcgca atgttcacat accaccgcca gaaccaaatg
     1321 cccgaatcct ctttgcctat tcaaccgcac acatcgaaat caagaatggg gtagttcact
     1381 acggcgatct gaagcatgag atctcgggtg aagcccggaa tctgaaggcg acgattcaac
     1441 ctgacgatcc aaatcagcca gttgaaagtc ggatgaacac cgtagtcttc ggaatgacgg
     1501 attcgacgtt tacctacgac ggtcgaccaa tcaacaatat cgatctcgac gcgcgcgcgc
     1561 gtatcaatca aacacgcgct gaaatccagg aactcacact caagtcgcct ttggctgaag
     1621 cccacctcac cggaaccatg gacgactggc gagcgcttcg ctaccagatg aacatcacgt
     1681 cgtccgtcga cttgacccag gtctcagata ccttcgagac ggacgcgact ctgcgaggta
     1741 tcggtaattt ttccggcacc gtaactggcg aaggcgatca attcaaaatt caaggcggaa
     1801 tcaaatcaga cgcgctcgcg gctgatggtg tgcgactcca gggactcaac gtcactacga
     1861 cgggatctgt tcacggcaag agctacgaga ttaacggcaa agctgttgct gacttgctca
     1921 cgtcggg
//
LOCUS       DATCGC010002093         1421 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_427138, whole genome shotgun sequence.
ACCESSION   DATCGC010002093 DATCGC010000000
VERSION     DATCGC010002093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1421)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1421)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1421
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_427138"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..221
                     /locus_tag="VIJ87_19890"
     CDS             <1..221
                     /locus_tag="VIJ87_19890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446674.1"
                     /translation="AERTLDSLADAGYQNRFEGSALSQGVTRPETHGFPDATFDFISV
                     KGLTALQPIVTQTSASDHWPVTRSAAPT"
     gene            complement(504..1034)
                     /locus_tag="VIJ87_19895"
     CDS             complement(504..1034)
                     /locus_tag="VIJ87_19895"
                     /inference="COORDINATES: protein motif:HMM:NF012271.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HEY5446675.1"
                     /translation="MSSSLLPRSLFLVSLVLLPLGMAAIPARGQSPDMYAADTLTSNG
                     NRIRTLYPQPENPETATPSRPSTLATPSGTPAAPSNLTATAVSTSSITLSWQNNANNA
                     TEIYVERSTDGRVFNVITVLGPFRTGMNDPGLTANTVYYYRVRAHNAAGYSGYSNVAS
                     TRTFANPTPTPAANQR"
BASE COUNT          334 a          338 c          392 g          357 t
ORIGIN      
        1 cggcagaaag aacactcgat tccctcgctg acgctgggta ccagaaccgg tttgaaggat
       61 cagctttatc tcaaggagta actcgcccgg agactcatgg ctttccagat gccacctttg
      121 acttcatctc tgtgaagggg ctaactgcgt tgcagcccat cgtcactcag acgagtgcat
      181 ctgatcattg gccggtgacg cggtcggcag cgcctacttg agcaattcgc ttgtaattct
      241 cgccatttac tcttcgatca atattcaatc ccgtttcgtc agcaaacaaa tatgtccaag
      301 tcaaatcaat ttcatggcaa cctacgacac tggcagtaac ttcggacgga ggatgcgggt
      361 tcggtatcgg tgttgaagtt ggagttaggg taggcctaga cgttggcgtt gctggcgctg
      421 tcggcgttcg gtgtgtgcag gcgttgaagt aggtgtgaaa gttggagtcg gcctcggggt
      481 cgacgttgcg gtcggtgtag gagttaccgt tggttcgcag ctggcgtcgg cgttggattc
      541 gcaaatgttc ttgtgcttgc cacatttgaa tagcccgaat atcccgcagc attatgcgct
      601 cgaacacgat agtaatagac agtgttagcc gtaagacccg gatcattcat tccagtccta
      661 aacggcccca gtacggtgat cacgttgaac acacggccgt cagtcgaacg ttctacgtag
      721 atttctgttg cattattagc attattttgc caggacagag tgatactact ggttgacaca
      781 gccgtagccg tcaggtttga cggagcagca ggtgttccac ttggagttgc taacgtagaa
      841 ggccgggatg gggttgcagt ttccggattt tcaggctgtg gatataacgt tcggattcta
      901 ttgccgttcg aagtgagggt gtctgcggca tacatatcag gcgattgccc tcgcgctggt
      961 attgcagcca tacctaacgg caagagcacc aacgaaacaa gaaataagct tcgtggcaaa
     1021 agcgaactac tcacggatct tccaaatagt tgaacgggtc ggcgcttgca aatacaatcg
     1081 acgtgattgc tagaaaggta agcagccgac gtgccgaaca ataaccctct tacacaatct
     1141 caacatttca ttcgtaacca tctccgtcta agcgtcttga attggagcaa gagggaacta
     1201 atcggctccg ctactgtttt ggtaaacacc attagaggta aggctggccg acgtacagct
     1261 ggggtccgcc agaatcctaa actgctataa gctgcgcaaa cggcttccaa aagtgggcct
     1321 ggacggctat atgtggggcg ggcattcggg tgtaaggaaa tcctgacgga acagcatcgg
     1381 ttttggtttg tttggtcgag cacgcggcac atttcgccgt t
//
LOCUS       DATCGC010002094         3885 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_394378, whole genome shotgun sequence.
ACCESSION   DATCGC010002094 DATCGC010000000
VERSION     DATCGC010002094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3885)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3885)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3885
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_394378"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(321..878)
                     /locus_tag="VIJ87_19900"
     CDS             complement(321..878)
                     /locus_tag="VIJ87_19900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446676.1"
                     /translation="MFGTSTTPIIFTPGSMTITTDTATDYIGAVKSLPRPLPQNLSIS
                     AQFEFTEYQTPPNPTTTYQLFLTSPDSSRGIFLSLFGDGNGVIQVGDVLLIPAWIFTW
                     TPNLGHHIVHLSIDSRGVPRIWIDHQEIPVTFFGDIFSIFDQLPGNTISFFGGAGENA
                     PAASPISRVFLMEGNAGQETNFCCP"
     gene            complement(1147..1503)
                     /locus_tag="VIJ87_19905"
     CDS             complement(1147..1503)
                     /locus_tag="VIJ87_19905"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY5446677.1"
                     /translation="MSPEEADLQALEKGWAQHGVVIDASISTDTYGRKNLHLSRIEIE
                     KRLRGRGLGTKAMEDLTHLADQYGMLLTLSPSTDFGASSKERLKRFYRRFGFVSNKGR
                     QKDFTLFDSMYRLPKG"
     gene            complement(1503..2660)
                     /locus_tag="VIJ87_19910"
     CDS             complement(1503..2660)
                     /locus_tag="VIJ87_19910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446678.1"
                     /translation="MSKRAVLGKVATEAYQEYLDYLEANAKDLEKLGLQEFRNFTPDM
                     EDHYKAYKFMNGLGFVYGAAITRAYMSDLSAKDLAFPKSIQTAIDNLSMMYQDVDSRR
                     EMKDDVVIRMAAQELPQYVPEWLNLDQVIADAKASYGGKGVYLNDFYWSVLQTISAIA
                     RGLNFFLLADKRSELMVFRREGPLGGEFIPRALLDLSEEEEKALLKTVVKEANKKIAE
                     RTWYGIRQEPLPKTGDFAILYWSNGPAVWFADNRTESAMIARDHGQTSIRLDANQILV
                     PFHQALVQKVLSGLDDIPLYVYSTEAKERGEYPEPTNKNVQKAVRSIIQAQNPELDYE
                     EHAILAAEMFDHLVKARRYDRASMAIVSIWLQSQPVNLLPYIQLIERWMKS"
     gene            complement(2657..3382)
                     /locus_tag="VIJ87_19915"
     CDS             complement(2657..3382)
                     /locus_tag="VIJ87_19915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446679.1"
                     /translation="MDSGALLKTMLPMAVSLNIMEFQKRPWSELQQIATHASQYVAEK
                     GDNILFKSAKKGDTAKAFNELAKGVAVLAFAPGGVTLFGQHFEATHPESLTSGTGRWL
                     YHSTFAVDLPNIAQDGLIPDEEPGEEHPKLYLTGIIGQAVRHIQWAFDSLNYISAGDP
                     VLLRVHSAHVGDVERANTLTDDWFIERPIPAIFIQVWVPEIKMWTEVREAVKQGYFAT
                     DHRTYGKTREDLLRYIQESWPTI"
     gene            complement(3508..>3885)
                     /locus_tag="VIJ87_19920"
     CDS             complement(3508..>3885)
                     /locus_tag="VIJ87_19920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446680.1"
                     /translation="SEGDRGQGTRPGQLRGGDMPWMSINEWKKRNGIGRLAPKKKEKE
                     PAPSKKKKAVFKLLGYDTFSNEWYNLEEFSTEKKAREAGIKRLEELAISQPASSSGGQ
                     TSGGIQDRVFIEFPDGNRYRVIG"
BASE COUNT          854 a         1048 c         1066 g          917 t
ORIGIN      
        1 tcggtcgcga aggccgtcgc ctgatcgttc agatcgcttt cgatgaagag gtagttccgg
       61 attccctttt gatcgcaggc cgcagccgcc gcgcgcaacg cctcttcatt gggcaatgag
      121 aagagcacga acgaggacac gtcatcagga ttgccgaaac ggattccagc ttcgtgcgca
      181 gcgtgagcgg cttggatggt ctggtgagta ggagtgaggt cggttcggat gccgatgtag
      241 acgtacttct tgggggcggc gacctacgtt tcgttcatga tcaagagact actgcatagg
      301 cgcatctgtg tcaaggaaaa ttacggacaa caaaaattcg tctcctggcc ggcgttccct
      361 tccatgagga agactctcga gatgggagat gccgcaggag cattctctcc ggcgccacca
      421 aagaacgaga tggtgtttcc agggagctga tcgaagatgc tgaaaatatc tccgaagaaa
      481 gtcaccggta tctcttggtg atcaatccag atccttggaa cgccacgcga gtctatcgaa
      541 agatgaacga tatgatgacc gaggttcgga gtccaggtga atatccaggc gggaatgagc
      601 agaacatctc cgacttgaat gacgccgttt ccatcgccaa agagggaaag gaaaatccct
      661 ctgctggagt cgggactggt cagaaagagt tggtaggtag tggttgggtt cgggggagtc
      721 tgatactccg tgaattcgaa ctgagccgaa atgctcaagt tctgcggcaa cggcctgggc
      781 agagacttca cggcaccaat gtagtccgtt gccgtatccg tcgtaatcgt catcgatcct
      841 ggggtgaaga tgatcggggt cgtggatgtc ccgaacactt cgctgaacgt ccatccacag
      901 atcggccccg gtgatgctgc agtgatctgg cccacgcact cctggaagca atctgcaaag
      961 aaatttgatg gcgtacaacc agaagacggg agtaccccta caggtcctcc caacggagaa
     1021 atcccgctag caggaccgcc gaacggcgtc acgaagccgg gaagaatgca gggaccttgt
     1081 ggaattggcc ggatgaaggg tggagggcac ttcggcctct tgggatcctg attcattacc
     1141 atgatcctat cctttcggaa gccgatacat cgagtcaaaa agcgtgaagt ctttttgacg
     1201 ccctttatta ctaacaaatc cgaacctgcg atagaagcgc ttgagacgtt cttttgagct
     1261 cgctccgaaa tccgtggatg ggctgagcgt gagcagcatg ccgtattggt cagctagatg
     1321 cgtcagatcc tccatagcct tggtccccag accgcggccg cggagccttt tttcgatctc
     1381 gatcctggat agatgaagat tcttccggcc ataagtatcc gtggagatgc tggcatcgat
     1441 caccacaccg tgctgcgccc accctttttc aagagcctgg agatccgctt cttcggggct
     1501 cattagctct tcatccagcg ttcgatcagt tgaatgtagg gtaaaagatt cacgggttgg
     1561 gattgcaacc agatcgagac gatagccatc gaagcccgat catagcggcg agccttcacc
     1621 agatgatcga acatctctgc cgcaagaatg gcatgctctt cgtaatccag ctcaggattc
     1681 tgcgcctgga tgatcgagcg gacggccttc tggacgttct tgttcgtggg ctccggatat
     1741 tcaccccgct ccttcgcctc cgtcgaatag acgtagagcg gaatatcatc aagcccggaa
     1801 agtacctttt ggacaagcgc ctgatggaaa ggcacaagga tctgattggc gtcaaggcgg
     1861 atgctggtct ggccgtgatc ccgtgcgatc atcgcgctct cagtccggtt gtccgcgaac
     1921 caaactgctg gaccattcga ccagtaaagg atggcgaagt ctccggtttt gggcagaggc
     1981 tcctgccgaa tcccatacca cgtccgctca gcgatcttct tgttcgcttc tttgacgacg
     2041 gtctttagaa gcgccttttc ttcttcctcg ctcagatcaa gcagggctct agggataaat
     2101 tcgccgccta aagggccttc cctccggaat accatgagct cggacctttt atctgccaaa
     2161 aggaagaaat tgaggcctct ggcgatcgcg ctgattgtct ggagaacgct ccagtagaaa
     2221 tcgttgagat agacgccctt tcccccatac gatgctttcg catccgcgat gacctggtcg
     2281 agattcagcc attcaggaac gtattgagga agttcctggg ctgccatccg gatgacgaca
     2341 tcatccttca tctcgcgccg gctatcgacg tcctggtaca tcatgctcag gttgtcgatt
     2401 gcggtttgga tgctcttcgg aaaagctaag tccttggccg ataaatcact catataggcc
     2461 cgcgtgatcg cagcgccgta aacgaagcca aggccattca tgaacttata ggctttgtaa
     2521 tgatcttcca tgtccggcgt gaaattacgg aattcctgaa ggccgagttt ttcaagatcc
     2581 ttggcgttgg cctcaagata atccaggtat tcctgatagg cctccgttgc caccttccct
     2641 aggaccgctc tcttgctcat atggtcggcc aggattcctg gatataacgc aggaggtctt
     2701 cccgggtctt tccataggtc cgatgatccg tggcgaaata gccctgcttc acggcctccc
     2761 gcacctcggt ccacatcttt atctctggaa cccagacctg aatgaagata gcgggtatcg
     2821 gcctttcgat gaaccaatcg tccgtaagag tgttagcccg ctcgacatcg ccgacgtgag
     2881 cactgtgaac tcgaagaaga acaggatctc ctgcgctgat gtaattgagc gaatcgaagg
     2941 cccactggat gtgccgtacc gcttgaccga tgattccagt gagatagagc ttggggtgct
     3001 cctctcccgg ttcttcatct gggatcaacc catcttgggc aatattggga aggtctaccg
     3061 cgaatgtcga gtgatatagc cagcgaccgg ttccagaggt caaggattct ggatgcgtcg
     3121 cttcgaaatg ctgaccgaag agcgtcacgc cgccaggagc gaaggcaagg acagccacgc
     3181 ccttggcgag ctcgttgaaa gcctttgccg tgtcgccctt cttggcgctc ttgaaaagga
     3241 tgttgtcacc cttttcggcg acgtattggg aagcgtgggt ggcgatctgc tggagttccg
     3301 accagggccg cttctggaac tccatgatat tgagagaaac cgccatcggc agcatggtct
     3361 tgagaagggc gccggaatcc atgcactcga gtatatcagg caccatctag ctttgcagca
     3421 gtagatggtg ctcccgacgg gattcgaacc cgtatgcgga cttttagaga gtcctagccc
     3481 gcctttggcc cacgggagca ggataaatca gccgatcacc cgatagcgat tcccgtcagg
     3541 gaactcgatg aagacacgat cctggattcc gccggaagtc tggccgccgg agctagaggc
     3601 tggctgagag atcgccagtt cttccagcct cttgattccc gcttccctag ccttcttttc
     3661 cgtggagaac tcctccaggt tgtaccactc attggagaat gtatcgtacc cgagaagttt
     3721 gaagacggct ttcttcttct tagacggagc cggttctttc tccttcttct tgggagcaag
     3781 gcgtccgatt ccgttccgct tcttccattc gttgatcgac atccagggca tgtcccctcc
     3841 tctcaattgt cccgggcgag ttccttgacc gcgatctcct tcaga
//
LOCUS       DATCGC010002095         1566 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_297252, whole genome shotgun sequence.
ACCESSION   DATCGC010002095 DATCGC010000000
VERSION     DATCGC010002095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1566)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1566)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1566
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_297252"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..738)
                     /locus_tag="VIJ87_19925"
     CDS             complement(<1..738)
                     /locus_tag="VIJ87_19925"
                     /inference="COORDINATES: protein motif:HMM:NF036799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446681.1"
                     /translation="MELICEIAGGIATEDAIDVYPSPVASRVVSFHPPRVEGLTSLSV
                     PVPEMKRILAGLGFEELTASDSELKFKVPSWRIDVEQEEDLVEEVARHFGYDRIGSAL
                     PPTNSSGEYQPTEMKQRALRRSLTAFGFDEAINFSFIQEQSDFELIPAFGDGVVQPEL
                     RNPILEDASRMRSTLLPGLLESVRHNLNHGIRDVRLFEIGRVFGVFNVGSLPEETTAL
                     AMVVTGGALEEGRAVAEREVDFFDLKGA"
     gene            complement(724..1530)
                     /locus_tag="VIJ87_19930"
                     /pseudo
     CDS             complement(724..1530)
                     /locus_tag="VIJ87_19930"
                     /inference="COORDINATES: protein motif:HMM:NF015448.4"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase beta subunit-related
                     protein"
BASE COUNT          390 a          436 c          372 g          368 t
ORIGIN      
        1 cgcgccttta agatcgaaaa aatcgacctc tcgttcagca acggcacgtc cttcttccag
       61 ggcaccgccg gtcaccacca tggccaacgc cgtggtctct tcgggtaacg atccgacgtt
      121 gaaaacacca aaaacacgcc caatttcaaa caagcgcaca tcacgaatgc cgtgattcaa
      181 attatgacga accgattcga gcagcccagg caacaaggtc gaacgcatgc gcgacgcatc
      241 ttcaagaatc gggtttctaa gttcaggttg gacgacaccg tcaccgaagg ctgggattaa
      301 ttcgaagtct gactgttcct gaatgaaact gaagttgatt gcttcatcaa agccaaacgc
      361 agtcaaggag cgacgaaggg cgcgctgctt catctctgtc ggctggtact caccagatga
      421 attcgttggt ggcagcgctg agccaatcct gtcataacca aaatgccgcg ctacttcttc
      481 aacgagatct tcttcctgct ctacatcgat gcgccaggac ggtactttga acttcaattc
      541 actgtcgctg gctgttagtt cttcaaaacc aaggcctgcc aaaatccgct tcatctccgg
      601 gacaggaacc gagagtgaag taagtccttc aactcgaggc gggtgaaaac taacgacccg
      661 cgaggctact ggagatggat agacatcgat cgcatcttca gtagcgatgc ctccggcaat
      721 ctcacatatc aattccacgc aacgccgctg agcgcgaagc actccatcgc agtcagcacc
      781 tcgctcaaaa cgtctcgagg cttcggtgtc cattccgagg gtacgagcag ttcgtcttac
      841 agaatctgga ttaaagtagg cgctctcgat taggacatcg gttgtcgcgg tcgaaatctc
      901 agactcttcg ccacccatga ttcccgcgag cgcaactggc ttgtctgcat cggcgatgac
      961 aagcatctcg ctggtcagtt cacgctcaac accgtcgagc gtcttcagtt tctcaccggc
     1021 agcggcacgt cggacgacaa ttcgactacc agaaagcttt ttgaagtcga acgcatgaag
     1081 cggttaccca acctcatgaa gcacatagtt tgttatatca gcgacattgt tgatgggacg
     1141 ctggccaatt gtctccaatc gttttaccaa ccattcggga gagggtccaa ttcttactcc
     1201 ccgaatcaac ctggcagcat aacgaggaca caagttttcg tctttgattt caaccgaggt
     1261 gagactagaa gcggctcctt cagttggcgc agggtttcca gtaggcaaac tcaattgacc
     1321 acgctcaatg accgtcactt ccctggcgat gccaacatgc gaaaggcaat caggcctgtt
     1381 tgaaggaact tccacatcca acaccgagtc atcactgtgt tcatcgacag catcgattgc
     1441 cagaccaaca ctcgtcagcc gctcacgcaa ttcttgtggt gagagcgcgg tattagttaa
     1501 ttcgcgaagc cagttgtggc tgattagcat tgaactttgt gctttgtgct ttgtgctttg
     1561 tgcttt
//
LOCUS       DATCGC010002096         1453 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_32460, whole genome shotgun sequence.
ACCESSION   DATCGC010002096 DATCGC010000000
VERSION     DATCGC010002096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1453)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1453)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1453
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32460"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..456
                     /locus_tag="VIJ87_19935"
     CDS             <1..456
                     /locus_tag="VIJ87_19935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446682.1"
                     /translation="KNSVTAKTNTSSSSNATNSNSNDTSPNKSKDMNNSASEQGNEPT
                     SGEKWGGDHVRLVMKQGGADLEFDCAHGEITVPVKPDAQGHFDLPGTFQREGGPVRAD
                     GPKEGQPVKYVGQMNHNTLTFQIHLTSPDETTETFTLTRGSEGRLRKCR"
     gene            512..1360
                     /locus_tag="VIJ87_19940"
     CDS             512..1360
                     /locus_tag="VIJ87_19940"
                     /inference="COORDINATES: protein motif:HMM:NF025091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase/phosphoenolpyruvate mutase
                     family protein"
                     /protein_id="HEY5446683.1"
                     /translation="MSTPNATQASAVNRFRTLHASGCFVLPNPFDVGTAVYLQHLGFK
                     ALATTSAGFAFTRGLTDAGMTRDLMLQHVREIVEATPLPVNADFQHGYVDEPEGVAES
                     VRMCVATGVAGLSIEDSTGNASSPLYEDTLAVERIKAARQAIDESSVPVVLTARCEVW
                     LVGHPNPLKLALERLTAFAEAGADCLYAPGVAKPDEISAIVKAVAPKPVNVLVHRPDP
                     NLTLARLTELGVRRISVGSALSRVAWGAFINAARSIAETGEFDALAVGAPFGDMNEVF
                     GNRDGK"
BASE COUNT          353 a          348 c          411 g          341 t
ORIGIN      
        1 aagaattctg taactgcgaa gaccaacacg tcttccagtt ccaatgctac gaattccaat
       61 tcaaacgata cctcacctaa caagagcaag gacatgaaca attcagcaag cgagcaggga
      121 aacgaaccca cgtccggcga gaagtggggc ggcgatcatg tcagattagt aatgaagcaa
      181 ggcggtgcgg acctggaatt cgattgtgct catggcgaaa tcactgtgcc cgtcaaacca
      241 gatgcacagg gacatttcga tcttccggga acgttccaaa gagaaggcgg acctgttaga
      301 gcggatgggc cgaaggaagg gcaaccggtt aaatatgtcg gacagatgaa ccacaacacc
      361 ctgacttttc aaatacacct cacaagtcct gacgaaacga ccgaaacgtt tactttgacg
      421 cgcggtagcg aaggaagatt gcgcaagtgt cgttaggaat tagctgcgct tgaagtttgt
      481 agtacgagct tcgacgtcgt acgatccgtt tatgagtact ccaaacgcaa cccaagcttc
      541 cgctgtcaat cgctttcgaa cattgcatgc ttccggatgt ttcgtactgc caaatccgtt
      601 tgatgtggga acggcggttt acctacagca ccttggcttt aaggcactcg caacgacatc
      661 tgcgggattt gcattcacgc gaggtttgac tgatgccggt atgactcgag acctgatgct
      721 tcaacacgtc cgcgagatcg ttgaggcgac acctttgccg gtgaacgcag attttcagca
      781 cggttacgtc gatgaacctg aaggagtcgc tgaaagcgtg cgcatgtgcg tcgcgaccgg
      841 agttgctgga ctatcgattg aagatagcac tggcaatgcc tcgagtcctt tgtacgaaga
      901 tactttggcg gtggagcgga tcaaggctgc gcgtcaggcg atcgatgaat cgagtgtgcc
      961 cgtagttttg actgcgcgtt gcgaggtgtg gctcgtcggt catccgaatc ctcttaagtt
     1021 agcgctcgaa cgtttgactg cgtttgctga agctggcgcc gactgcctat atgcgcctgg
     1081 cgttgcaaag ccggatgaga tttcggcgat tgtgaaagcg gttgctccga aaccagtgaa
     1141 tgtcctggtg catagaccgg atccgaattt aacgttggct cgtctgaccg aacttggtgt
     1201 gcgacgaatt tccgtgggct ctgcactttc acgagttgcg tggggagcgt tcataaacgc
     1261 cgcccgcagc attgcggaga cgggtgagtt tgacgcatta gcggttggcg cgccgtttgg
     1321 cgatatgaat gaggtgtttg ggaatcggga tgggaagtga tctcagagtt cagatctcag
     1381 atttcaggtc tcaaagcact aagcaccaag tcccactcag ttttcgcttt aaatataaag
     1441 tcgggaatcc ccg
//
LOCUS       DATCGC010002097         1486 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_129823, whole genome shotgun sequence.
ACCESSION   DATCGC010002097 DATCGC010000000
VERSION     DATCGC010002097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1486)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1486)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1486
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129823"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..944
                     /locus_tag="VIJ87_19945"
     CDS             <1..944
                     /locus_tag="VIJ87_19945"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY5446684.1"
                     /translation="HRVLHLQSEHDEFRVGRMGRLYLRYLTQCLLSGVEWLPSANYVD
                     ATTIDGGSIVRLNVLTAVRTVKTRFLIGGDGVCSRVATDLQLDGNREWIVGVENIYHK
                     IALEGPPRLLCFLNPRLAPGYIAWIAYDGVEAHVGVGGYANRFDPISALEEFQTSVRD
                     IVDLRNAKQVERRGGRIPVGGVLKHIANERGLLIGDAAGAVSPLTAGGLDPCMRLSTL
                     AASVTAEFLATNNRAALTQYSGELFRSKFTSRLWARRIASLVRSSSLTELACVGLRMP
                     LFKRLAAQVFFGRGSFPNVDLSLSAQVADAAFEQTRM"
     gene            1146..>1486
                     /locus_tag="VIJ87_19950"
     CDS             1146..>1486
                     /locus_tag="VIJ87_19950"
                     /inference="COORDINATES: protein motif:HMM:NF017893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane CreD family protein"
                     /protein_id="HEY5446685.1"
                     /translation="MTKRIVAIAFIFVCATIAWAILGGTIFSRTYDSSASSSNRVEST
                     WGTAQNQGPPTATFKTVVSKQEETIENGKKTIKTIQNEYSTVLPLEASNIDVDLNLEH
                     RQKGLLWYSTY"
BASE COUNT          358 a          350 c          410 g          368 t
ORIGIN      
        1 cgcatcgcgt tctgcatttg caaagtgagc acgacgagtt tcgcgtcgga cggatgggcc
       61 ggttatatct tcgttatctg actcagtgct tactatctgg tgtcgagtgg ctaccttcag
      121 ccaactatgt cgatgcgacg acgatcgatg gtgggtcaat cgtcaggctc aacgtcctaa
      181 cagctgtgcg aactgtgaag actcgattct tgattggtgg cgacggagtc tgttcgcgtg
      241 tcgcgactga tttacaactc gacggcaatc gcgaatggat tgtgggtgtc gaaaacatct
      301 atcacaaaat cgctctcgag gggccaccgc gtttactgtg tttccttaat ccgcgtctgg
      361 cgccaggcta catcgcctgg atagcgtacg acggtgtaga agcgcacgtt ggtgtgggag
      421 gctatgcaaa tagatttgac ccgatttcag ctctcgaaga atttcaaacc agtgttcgag
      481 acatcgtaga tctgcgaaac gcaaaacaag ttgagcgtcg cggaggtcga attccagttg
      541 ggggagtgct caaacatatc gcgaacgagc gagggttatt gatcggtgat gctgccggtg
      601 cagtatcgcc attgacggcg ggagggttag acccgtgcat gagattgtcg acacttgccg
      661 caagcgtaac ggcggaattc ctggcgacga ataatcgcgc ggcgctcacg caatactccg
      721 gggaactgtt tcgctcgaag ttcacgtcgc gattatgggc caggcgaatt gcctcgttgg
      781 tgaggtcttc gtctttaact gaattagcct gcgtgggact gcgaatgcct ttgtttaagc
      841 gactggcagc acaagttttt tttggtcgtg ggtcatttcc caacgtcgat ctctcgttgt
      901 ctgcgcaggt cgctgatgca gcttttgaac aaacaaggat gtagttcagc acatgacctt
      961 gtgtggatta ccacattgtc gagctttgga tatcgttcga caatgacgac ttgtgacaag
     1021 tggtcggtac cacgcggtag cgtgtggctt gtcgaaaaat gccgacattt agccacgcgc
     1081 caccgcgtag tggtctgacg ttgacatcac ggcactagtg aaactcgttt aaggagcgag
     1141 gaaaaatgac aaagcgaatc gtcgccatcg cgttcatatt tgtttgcgca acaatagcct
     1201 gggcgatcct gggtggaact attttctcca ggacttatga ctcgagtgcc tcatcctcta
     1261 atcgagttga gtctacctgg ggcacggccc aaaatcaggg accgccaacc gcaactttca
     1321 agacggtggt gtcgaaacaa gaagagacga ttgagaatgg aaagaaaact attaagacaa
     1381 ttcaaaacga atactcaaca gtgcttccgc tcgaagccag taacattgat gtcgatctga
     1441 accttgagca tcgacaaaaa ggacttcttt ggtacagcac ctacaa
//
LOCUS       DATCGC010002098         1125 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_230568, whole genome shotgun sequence.
ACCESSION   DATCGC010002098 DATCGC010000000
VERSION     DATCGC010002098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1125
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230568"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..226
                     /locus_tag="VIJ87_19955"
     CDS             <1..226
                     /locus_tag="VIJ87_19955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446686.1"
                     /translation="LTRIFLVESLTRVVTYSAFGVMRMQIVLFGLALIPVMYLGLYVG
                     NHAFFKIPERWFGRLAGIIAIASALRLITS"
     gene            283..990
                     /locus_tag="VIJ87_19960"
     CDS             283..990
                     /locus_tag="VIJ87_19960"
                     /inference="COORDINATES: protein motif:HMM:NF015682.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446687.1"
                     /translation="MNNHEIAEKFADLSTPLISDAMLRLKLPQRLAPIGIRPVVAGSR
                     VAGRVLPAKHYGSVDVFLEAMGSAQPGDVLVIDNEGRYEEACIGDLTALEAAASGLSG
                     IIVWGTHRDTPELKQIGLPIFSYGSWPCGPLRLDPRDSSALSSAHVGEVLITSDDVVF
                     ADDDGCLFVEAAMLDEVLAGARTIWETERRQADAIRAGETLRMQLKFDDYLAKRANDA
                     SYTFRQHLRGIQGAIEE"
BASE COUNT          251 a          253 c          328 g          293 t
ORIGIN      
        1 actaacgcgc atcttcctgg tggaatcatt gacgcgagtt gtgacgtact ctgcgtttgg
       61 cgtaatgcga atgcaaatag tcttgtttgg actcgcctta attccggtaa tgtatcttgg
      121 actctacgtt ggtaaccacg cgttttttaa gatccctgag cggtggtttg gtcgacttgc
      181 gggaataata gcgattgcct ccgcgttgag attgataact tcgtgagagt cagaaccact
      241 gcgcggtagc ccgtggctct ctattactac ttggaagaaa caatgaataa tcacgagata
      301 gctgaaaagt tcgccgacct ttcaacaccc ctcatttccg atgcaatgct ccggctgaaa
      361 ttaccacagc gccttgcgcc tatcggtata aggccggtgg ttgccggcag tcgggtagca
      421 ggtcgagttc ttccggccaa gcactatgga agtgttgatg tttttctgga ggcgatggga
      481 agtgcgcagc caggtgatgt gcttgtgatt gacaacgaag gacgctacga ggaagcctgc
      541 attggagatc taactgcgct cgaagccgct gctagtggtc tgagcggcat aattgtttgg
      601 gggactcatc gcgacacgcc tgaacttaaa cagattggat taccaatctt tagttatggc
      661 tcatggccct gcggcccgtt gaggctcgac cctcgtgatt cttcagcgct cagctctgcg
      721 catgttggcg aggtgctaat cacttctgac gacgttgtgt ttgctgatga tgatggatgt
      781 ctttttgttg aggccgccat gttagacgaa gtgttggcgg gggctcggac gatttgggaa
      841 acggagcggc gacaagccga cgcgatcagg gcgggtgaaa cacttcggat gcagctcaag
      901 tttgatgact atctggcgaa gcgcgccaac gacgcgagtt atacattccg acagcacttg
      961 cgcggcatcc agggagcgat tgaagagtaa agaaagtgcc aagttgactt actcgatcga
     1021 aaacattggt catatatcat ttagtatttg tcagttggtc attggctgaa gtggcgtcca
     1081 ggtggcgatg tagtcagtac cacagcgcgg tagcgtgtgg cttag
//
LOCUS       DATCGC010002099         2566 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_261892, whole genome shotgun sequence.
ACCESSION   DATCGC010002099 DATCGC010000000
VERSION     DATCGC010002099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2566)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2566)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2566
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_261892"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            57..1355
                     /locus_tag="VIJ87_19965"
     CDS             57..1355
                     /locus_tag="VIJ87_19965"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5446688.1"
                     /translation="MKTVKLIALSVAIVGALVLGLVRLRSVSRKTVLVVNSTESRATS
                     KADERILNAQQAIEKAPDKSGGYNQLAAAYMQKARETADFAFNAKADEALTRSLTVER
                     DNYDALKLRAKLQLTYHRFAEALETTRLARNVRTDDHDVWGQITDALVELGDYRGAVQ
                     SAQKMVDLRPDSSAYARVSYLRSLHGDTYGAIFAMNAAVKAANPNDPEGIAWCRVQLG
                     NELMNAGKLEAAERQFDEALRTFPGHHLALQGKARARVAAGDLQGALNIYGQEEQKRP
                     SADAAQALGDLYTLLGQGDVAKHEYEKFESLERENAALERSWRHMLNYWLDHNQNLEE
                     AVSLATHEYETRKDIFTCDSLGWALFKNGRVVEAKRLINEALRTGTKDARINYHAGVI
                     YKAMNIRDKAVKHLQLGAALNSSFDPAQAEASKKMLAELK"
     gene            complement(1488..>2566)
                     /locus_tag="VIJ87_19970"
     CDS             complement(1488..>2566)
                     /locus_tag="VIJ87_19970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446689.1"
                     /translation="ISVNVSAQDATVLAEPYHIVVDSKDNVFVTRKYGLVKIAPNGTI
                     TNLSKQGPVIGGMDRAWYDLIIDSKDNLYAHDGKVIYKIVVSADNIVTLKKFAGQDYS
                     YKLEDGPLATAGFNAIGLMTIDKNDNIYLTDSADKIKDTIGTNFVTDNFNLSDPARKI
                     ERKNRKAFSVIRKISSNGIVSTLKTPDGKFILPNQISGMAIDPQGNIIFGSYSFGRFV
                     GKIDLATGAITLVAGQPYKREWCPIYTQGPIATAEFVEPENIIVNKKGEILVADQRIN
                     RIIKIADGRMSTLAGGNIIDDCSGNIAGSSENGNRDGKALTALFGSPKGMAYDSKGNL
                     FIADTANHRIRKLSPEGMVTTFAK"
BASE COUNT          608 a          663 c          698 g          597 t
ORIGIN      
        1 gcaccgaacg gcaatagaag ccagttcgca ttactcaaca atgacaggag gaagaaatga
       61 aaacagttaa gctcatcgct ttgtcggtag cgattgttgg tgcccttgtg cttgggcttg
      121 tccgtctcag gtctgtctcc aggaaaacag tcctggttgt gaattcgact gaaagcagag
      181 cgaccagcaa agccgacgaa agaatactta acgctcagca ggcaatcgaa aaagcgcctg
      241 acaagtcagg aggatacaac cagctcgcag ccgcttacat gcagaaggcg agagagaccg
      301 ctgactttgc ctttaacgcg aaggccgacg aagccctcac tcgatcactc actgtcgaac
      361 gagacaatta cgatgcgctc aaactccgtg caaaattaca attgacttac catcgctttg
      421 ccgaggctct tgaaacaacg cgtctcgcgc ggaacgttcg cacggacgat cacgacgttt
      481 ggggtcagat tacagacgcg ctcgttgaac tgggagatta tcgaggcgcc gtgcagtctg
      541 cgcagaagat ggttgacctg cgacctgaca gttcggcgta tgcacgcgtc tcctacctgc
      601 gatcattgca tggcgatact tatggagcga tcttcgcgat gaacgctgca gttaaagctg
      661 ccaacccgaa tgacccggaa ggcattgcct ggtgccgagt gcagttggga aacgaactaa
      721 tgaacgcggg aaaactggag gctgccgaac ggcagtttga tgaggcgctc cgcactttcc
      781 cgggacatca tctggcctta cagggaaaag cacgagcccg cgttgcggcc ggtgacttac
      841 aaggagccct gaacatttac ggacaggaag agcagaagcg tccttctgcc gacgcggccc
      901 aggctctggg agatctctac acgctgcttg gtcagggaga cgtcgcaaag cacgagtacg
      961 aaaagtttga gtcactggaa cgcgagaatg ccgcgctcga aagatcgtgg cgtcacatgc
     1021 tcaactactg gttagaccac aatcagaatc ttgaggaggc agtgtctctt gctacacatg
     1081 aatacgaaac gcgtaaagac atcttcacgt gcgactcact gggctgggca cttttcaaga
     1141 atggccgtgt agtagaggcg aagcggctca tcaacgaggc acttcgtacc ggaactaaag
     1201 acgcgcgcat caactatcac gctggagtga tttacaaggc aatgaacata cgagacaaag
     1261 ctgtaaagca tcttcagctt ggtgcggcgc tgaactcatc ttttgatccg gcgcaggctg
     1321 aggcctcgaa gaaaatgctg gcggagctaa agtgagaaga cagaatccac ttcgaacaaa
     1381 ggaagcttgt ttgctttgcc tgtaggaggg cgggatggtt atagcttggc gattcaccga
     1441 acccagagtt attggcggtg gttcaatctc caccgcctcg gccagagcta tttcgcaaag
     1501 gtcgttacca ttccctcggg tgacaacttg cggatgcggt ggttggccgt gtcagcaata
     1561 aatagatttc ccttgctgtc gtaggccata cctttcggcg aaccgaacag tgcggtcaat
     1621 gccttgccat ccctgtttcc attctccgag ctgccggcaa tattccccga acaatcgtcg
     1681 atgatgtttc cgcccgcgag cgtcgacatt cttccatctg cgatcttgat gatccggttg
     1741 atgcgttgat cggcaacgag tatctcgcct ttcttgttca cgatgatatt ctcgggctcg
     1801 acgaactctg ccgtggcgat cgggccctgt gtgtagatcg ggcaccattc tcgtttataa
     1861 ggttgacccg cgacgagtgt gatcgcgccg gtggcgaggt cgatcttccc cacgaatcgg
     1921 ccgaagctgt aagagccaaa aatgatatta ccctgcggat cgatcgccat gccgctgatc
     1981 tgattcggga gaataaattt tccgtctggc gtctttagtg tcgacacaat tccattcgag
     2041 ctgatcttgc gaatcacgct aaaagccttc ctgttcttcc tctcgatttt ccttgctggg
     2101 tcactcaaat tgaaattgtc cgtgacgaaa ttagtgccga tcgtgtcctt tatcttgtcg
     2161 gcgctgtcgg tgagataaat attatcgttc ttgtcgatcg tcatcaggcc gatggcattg
     2221 aagccggctg tcgcgagcgg gccgtcttcg agcttgtagc tgtaatcctg tcccgcgaac
     2281 ttcttcagcg taacaatgtt gtcagccgat acgacgatct tgtaaatgac cttgccgtcg
     2341 tgagcgtaaa gattgtcttt ggaatcgatg atcagatcgt accaggcgcg gtccatcccg
     2401 ccgatgaccg gaccctgttt tgaaaggtta gtgatcgtgc cattgggcgc gatcttcacc
     2461 aggccgtact ttcgcgtgac gaaaacattg tccttactgt cgacgacgat gtggtaaggc
     2521 tcggcaagaa cggtggcgtc ttgcgccgac acgttgacgg aaatca
//
LOCUS       DATCGC010002100         1019 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_261898, whole genome shotgun sequence.
ACCESSION   DATCGC010002100 DATCGC010000000
VERSION     DATCGC010002100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1019)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1019)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1019
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_261898"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..193)
                     /locus_tag="VIJ87_19975"
     CDS             complement(<1..193)
                     /locus_tag="VIJ87_19975"
                     /inference="COORDINATES: protein motif:HMM:NF019241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1572 family protein"
                     /protein_id="HEY5446690.1"
                     /translation="MKQYLEDALSSFRAYKKLADKAIEQTKNDELFVTLDEESNSIAV
                     IMKHMAGNMISRWTDFLTSD"
     gene            complement(316..>1019)
                     /locus_tag="VIJ87_19980"
     CDS             complement(316..>1019)
                     /locus_tag="VIJ87_19980"
                     /inference="COORDINATES: protein motif:HMM:NF015113.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HEY5446691.1"
                     /translation="HAAEIVVGEDADKKQSALNKAVLGRIVEFVGNNEMGATGVTELQ
                     AILDFGEAAGIATRIQIDPSLARGLSYYTGAIMEISVKDLAGSLGGGGRYDNLVGMFG
                     GQDIPACGFSLGLERILVVMGERGMFPPNLSASPADVMVAVWNEESFRDSVKLAQELR
                     AGGLRVDLYPEADKLGKQFKYASSRVIPFVVVVGDEERARGEVAIKDLRSGEQRSVSR
                     NEIAKVMCENLSGLV"
BASE COUNT          256 a          318 c          193 g          252 t
ORIGIN      
        1 catcgctcgt aagaaaatcg gtccaacgcg agatcatgtt tcccgccatg tgcttcatga
       61 tcaccgcgat actgtttgac tcttcatcta acgtcacaaa caactcgtcg ttcttagtct
      121 gctcgatagc tttgtcagcg agtttcttgt acgcacgaaa cgacgaaagc gcgtcttcca
      181 agtattgctt catgatttcc ttgtctgaca tataaaaaag cgaatgaagt cggtaccact
      241 acgcggtagc gtgtggctct taccacccat gaatccagcc gagccacagg ctactgcgta
      301 gtggtactga cttcatcaca ctaggccact caaattctca cacattactt ttgctatctc
      361 attgcgactc acacttcgct gttcacctga gcgcaaatcc ttaattgcaa cttccccgcg
      421 cgctctttct tcgtcaccaa caaccaccac aaacggtatc acgcgcgacg aagcatactt
      481 gaactgctta ccgagcttat cagcctctgg atacaaatca actctcaagc caccagcacg
      541 aagttcttgc gccaacttaa ccgaatctct aaacgactct tcattccaca ccgccaccat
      601 cacatcagcg ggtgatgcgc tcaggttcgg aggaaacatt cctcgctcac ccatgacaac
      661 caggatccgc tcgagaccaa gtgaaaaccc gcacgccgga atatcctggc caccaaacat
      721 gccaactaaa ttatcgtagc gtccaccgcc accaagacta ccagcaagat ccttcacact
      781 gatttccatg atcgcaccag tgtagtagct caaccctcga gcaagactcg gatcgatttg
      841 tatgcgtgtt gcaattcccg cagcttcccc aaaatccaga attgcttgca actccgttac
      901 gccagtcgct cccatctcgt tgttgcctac gaattcgaca atgcgtccta gtacagcttt
      961 gttaagggca ctctgtttct tatcggcgtc ctcgcctacg acgatctcag cggcgtgtt
//
LOCUS       DATCGC010002101         1244 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_331714, whole genome shotgun sequence.
ACCESSION   DATCGC010002101 DATCGC010000000
VERSION     DATCGC010002101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1244)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1244)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1244
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_331714"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            125..>1244
                     /locus_tag="VIJ87_19985"
     CDS             125..>1244
                     /locus_tag="VIJ87_19985"
                     /inference="COORDINATES: protein motif:HMM:NF016450.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446692.1"
                     /translation="MSANLLETTNTGLGRRTSQAPVRVDFSKIATAVKIPNLIEIQRE
                     SYNRFLQMDLLPEEREKTGLQAVFQSVFPISDFRGTATLDFVEYQIGNWQCKCGRLEG
                     LNYLRANCKTCGSTIKVNPLAAGETLCHKCGTFNFVRPQLCENCGEPVGLKHKHDQQE
                     CQERGMSYSVPLKVKIRLTVYDKDPDTEVLSIRDIKEEEVFFGEIPLMTDNGTFIING
                     TERVIVSQLHRSPGVFFKRGALYVAKIIPYRGSWVEFEYDQKNLLYVRVGKRKFLASI
                     FLRALGLWFTPKVDLKSLRTDSILEDTVKNASFTDEDMLKAIYITDEVRLEDGRLMIQ
                     VPEHGVTNLVGMKVDFDIKGKGPDPIVRSGKKVTGTALE"
BASE COUNT          325 a          297 c          322 g          300 t
ORIGIN      
        1 cgtctcagga atattttgat tgcagatttc agattgcaga ttggtaggcg gtcaactggt
       61 gaccgctcaa tctactcaaa tctgaaatcg tcaatcttca atcggcaata aaaaggaatc
      121 tcacatgtca gcaaatttgc ttgaaacaac taatacggga ttaggaagac gtacaagtca
      181 ggcgcccgta agggtcgatt tttcgaaaat cgcgacggct gtaaagattc cgaatctcat
      241 cgagattcaa cgcgaatcat acaaccgctt cctgcagatg gatctattgc ccgaagaacg
      301 cgagaagacc gggctacaag cggtgtttca gtcggtcttt ccgatctccg atttccgagg
      361 caccgcaact ttggatttcg ttgagtatca gattggaaat tggcagtgca aatgcggacg
      421 cctagaaggt ttgaactatc tgagagccaa ctgcaaaacc tgcggttcga ctatcaaggt
      481 gaatccactc gccgccggtg aaacgctttg tcacaagtgt ggaacgttca acttcgttcg
      541 cccacagcta tgcgagaact gcggcgaacc tgttggcttg aaacacaagc acgatcagca
      601 ggagtgtcag gaacgcggca tgagttacag cgtgccccta aaagtgaaga ttcgactcac
      661 tgtctacgat aaggatcctg ataccgaagt tctttccatc cgcgacatca aggaagaaga
      721 agtcttcttt ggtgaaattc cgctgatgac cgacaacggt actttcatta tcaatggtac
      781 cgaacgcgtg atcgtgtcgc agcttcatcg gtcgccgggt gtgttcttca aacgcggcgc
      841 actctacgtt gccaagatca ttccgtatcg aggttcctgg gtcgagtttg agtatgacca
      901 gaagaacttg ctttacgtcc gagttggcaa gcgcaagttt ctcgcttcga ttttcctgcg
      961 agcactgggt ctgtggttca ctccgaaggt tgacctgaaa tcgctccgga cagattcgat
     1021 cttggaagac acagtgaaga atgcctcgtt tacggacgag gacatgctca aggcgatcta
     1081 catcacagac gaggttcgtt tggaagatgg gcgcctcatg attcaggttc ccgaacacgg
     1141 agtcacgaat cttgtcggca tgaaagtcga cttcgatatc aagggcaagg ggcccgaccc
     1201 tattgttcgc agtggcaaaa aggtgaccgg gaccgcattg gaag
//
LOCUS       DATCGC010002102         1351 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_64645, whole genome shotgun sequence.
ACCESSION   DATCGC010002102 DATCGC010000000
VERSION     DATCGC010002102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1351)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1351)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1351
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64645"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            347..946
                     /locus_tag="VIJ87_19990"
     CDS             347..946
                     /locus_tag="VIJ87_19990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446693.1"
                     /translation="MRIRTAIVFGVIGTCLFINLFMSSASSRTLQEGSVRWGVPVDGL
                     QMSISAVGSNNLDNPKFEVVMRNAGERDVTLNLGYMLGNGKVQLPQNISLNVSDALGR
                     TRKLEFFDRRYPAVAGRLDDYIVPLRAGSSYTLMLSLNQFWSPGTNEFELKLFPGKNH
                     ITAQFEGGGAKTSNLDVPGLKLMHFWLGNLQSNVLVIDR"
BASE COUNT          337 a          305 c          379 g          330 t
ORIGIN      
        1 agctaatcct ctcgaagaca ttcgcaacac gcggcgcatt aacgcagtgg ttgtgaacgg
       61 cagttactta ccaaaagcga cgttgcaaaa gatgctgact gaggcagaac ttaacgttag
      121 taagagataa ttgaagtggc ccgccgagcg atgtctaaca aactcttgca gttgtcggcg
      181 gcagcatgtt tctcaagtag ccttttcccc acagcttgag tggtgatcac gcgccgcagt
      241 tgaaggcggt cagcggctgc ggcatagcaa gtcgctggag ccggacgcgc gacaagcttg
      301 cctcccctcg atgagattga tttgcatgtt gtgaaagggg aagaagatga ggattcgaac
      361 ggccattgtg tttggcgtaa ttggtacttg cctatttatc aacctcttta tgtcttctgc
      421 ctcatcaaga actctacagg agggcagcgt aagatggggt gttccggttg atggcttgca
      481 aatgtctatt tcagccgtcg gttcaaacaa cttggataat ccaaagtttg aggtggtaat
      541 gcggaacgcg ggagagcgag atgtcacttt gaatcttggc tacatgctgg gaaacggtaa
      601 agtgcagctt ccccaaaaca tcagcctcaa tgtgagcgac gctctcggga ggacgcgcaa
      661 gctcgaattt ttcgaccgaa gataccccgc ggttgcaggt cggctcgatg actacatcgt
      721 tccgctccgt gctggttcga gctatacact gatgctaagt ctcaatcagt tctggtcgcc
      781 aggcacaaac gagtttgagt tgaagttgtt tccgggaaag aatcacatca cggctcagtt
      841 cgaaggaggc ggcgcgaaga caagcaactt ggatgtgccc gggctcaagt taatgcattt
      901 ctggttgggt aatctccaat caaatgtcct ggtgattgac cgatgatacc caatcgccgc
      961 cgaagcgctt ggaccggact cgccatgagt agggttcttt tttaagttgc gtgggcgagc
     1021 cgcttaagag agcaaggttc gttggcttcc cgccttattg aaaactatct attattctcg
     1081 ccgtgaaagt taagcagtca tcaaacttct cgagcaagat ggttggtatc tggcgcgaac
     1141 gaaaggtagt catcgtcagt tcaagcatct cgaaaaatct ggagcggtaa ctgtggctgg
     1201 caaggaaagc cttgacgttc cacccggcac tttgaatagt atcttgaagc aagctgggtt
     1261 aaagcagcga gaggacgaaa gatgagatac gcagttattg ttgaggaagg tgaaagcagc
     1321 tttggagcgc acgtgccaga tttgcctggc t
//
LOCUS       DATCGC010002103         1638 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_366205, whole genome shotgun sequence.
ACCESSION   DATCGC010002103 DATCGC010000000
VERSION     DATCGC010002103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1638)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1638)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1638
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_366205"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(62..307)
                     /locus_tag="VIJ87_19995"
     CDS             complement(62..307)
                     /locus_tag="VIJ87_19995"
                     /inference="COORDINATES: protein motif:HMM:NF014950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY5446694.1"
                     /translation="MIHNRLETLIDEMLEGQILLDEAMAEFEKLYIKKALARHRQHLS
                     KTASAIGIHRNTLSKRVATYHKQEKAESRTLKRVSKR"
     gene            complement(413..1309)
                     /locus_tag="VIJ87_20000"
     CDS             complement(413..1309)
                     /locus_tag="VIJ87_20000"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: protein motif:HMM:NF010568.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004639 -
                     phosphoribosylaminoimidazolesuccinocarboxamide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HEY5446695.1"
                     /translation="MSAATLLQTSLSDLPLLRRGKVRDVYSIDDDRLLIVATDRISAF
                     DCVLPTPIERKGEVLTALSQFWFEKLGHVVANHLLTSDVEQMPEVVRRHVQTLARRSM
                     LVKRAEVFPVECVVRGYLVGSGWKDYLRTGEVCGHKLPTGLLESAELPEPLFTPSTKA
                     EEGHDENISEAQVRDLIGAEATDMLRDASLRLYTEARSYARERGIIIADTKFEFGLDK
                     NGSLVLVDEVLTPDSSRFWPADDYQPGRSQPSFDKQFVRDYLETLDWDKKPPAPAIPP
                     DVAQATTARYVEAYRLLAGKEL"
BASE COUNT          397 a          398 c          412 g          431 t
ORIGIN      
        1 agatctcaga tttcaaatct cagaaggcgg aggtcgttga gactgagaag ggaatcagag
       61 cctaacgttt agacactcgc ttgagggtgc gagattcagc cttttcttgt ttgtggtagg
      121 tcgcgacgcg tttagatagc gtgttgcggt ggatgccaat agcggaagcg gtctttgata
      181 ggtgttgtct gtgccgcgcc aaggccttct ttatgtatag tttttcaaat tcggccatgg
      241 cctcgtccaa caggatttgg ccctcaagca tttcatcaat cagggtttca aggcgattgt
      301 gaatcatgaa tattgaagat tacaaattgc agatttcaga tttgaaacca acaaacctta
      361 gcaaatcggc cggggaatta caggaaccac taaatcctaa atctgaaact gattacagtt
      421 ctttcccagc taacagtcgg tacgcttcga cgtaacgtgc agttgttgcc tgggcaacgt
      481 cgggcggaat ggcaggagcc ggcggttttt tatcccaatc tagagtttcc agatagtcgc
      541 gcacaaactg tttgtcgaat gacggttgag aacggccagg ctgataatca tccgctggcc
      601 agaaacgcga cgaatcagga gtcagaacct catctacgag tacgagcgat ccgttcttat
      661 cgagtccaaa ctcgaattta gtatcggcga tgatgatccc acgctcacga gcgtaacttc
      721 gggcttcggt gtaaagcctt agcgatgcgt cgcgcagcat gtcggtcgct tcagcaccaa
      781 taaggtcgcg cacttgcgcc tcactaatgt tttcgtcgtg tccttcttct gcttttgtcg
      841 atggcgtaaa cagcggttcg ggtagttcgg cagactcaag caaaccggtc ggcaacttat
      901 gcccgcaaac ttctccggtt cttaagtagt ccttccagcc ggatccaacg agataaccac
      961 gcactacaca ttcaactgga aacacttccg cccgcttcac gagcattgaa cggcgggcca
     1021 atgtttgtac gtgtcgtctc actacttccg gcatctgctc gacgtcactt gtcagcaggt
     1081 ggttcgccac gacgtgtccc aatttctcaa accaaaactg ggatagcgca gttagcactt
     1141 cacctttgcg ttctatcgga gttggcaaca cgcaatcgaa ggctgatatt cgatcggtgg
     1201 caacaatcaa caatcggtcg tcgtcgattg aatagacgtc acgaactttg ccgcgacgca
     1261 gaagcggaag atcagaaaga gatgtttgca gaagagtggc agcactcata gttttgattg
     1321 ctgctcacgc agcgatgaaa ttcattgatt agaggcagtg cggattttgc tcgcgcgcaa
     1381 aaactttgtc aagacagagt gcgatttaag attgaagatt gcagattgaa gattggtcga
     1441 ctgcgatcga gtagctgatc atctgcagta cagctgcccc ccaaatctgc aatccttagt
     1501 ggtctagttc agtgtttctt tcaacctttg gatttgtgcc gcgtgattgt gagcgtgatc
     1561 cgcatagctc tttaaccact tctcaaccga gtagtggcca ctctcagtgt gcgtgcctga
     1621 tcgtttccag tcatcttc
//
LOCUS       DATCGC010002104         1546 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_129936, whole genome shotgun sequence.
ACCESSION   DATCGC010002104 DATCGC010000000
VERSION     DATCGC010002104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1546)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1546)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1546
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129936"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            336..1499
                     /locus_tag="VIJ87_20005"
     CDS             336..1499
                     /locus_tag="VIJ87_20005"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: protein motif:HMM:NF006050.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEY5446696.1"
                     /translation="MNVTHLECALCGTRHEAHRLHNLCVECGKPLLVRYDLEQAKQSL
                     TKESLKARRPDLWRYREVLPVEDDANIVSFGEGWTPLLHAERLGQSVGIPELYIKDEG
                     QNPTQSFKARGMAAAVSMAKELGASKLAVPSAGNAAGALAAYAARAGLECFIFMPKDT
                     PRANVVECEQTGAHVTLMDGLITDCGAEVGRRKEAEGWFDVSTLKEPYRVEGKKTLGY
                     EVAEQLDWELPDVIIYPTGGGTGLIGMWKAFDEMEQMGWIGSKRPRMITVQAAGCAPI
                     VRAFEDGKRFADEFPNAATTASGLRVPKAIGDFLILDALRDSGGTAVAVTDEELIAAT
                     KEIGAAEGVFCAPEGAACLPALKKLIAAGSVKSSDRVVLFNTGSGVKYMESFA"
BASE COUNT          374 a          360 c          450 g          362 t
ORIGIN      
        1 cgaaaaccaa tgagaccacg gcgtggccca aaactcgtaa accgttaaaa cggttcctca
       61 aaagcaagat cctactgtaa ccccaagctg aagcttgggg agaatgagag ttttgcaaga
      121 accactttag cttctcgctg acctggagga tcattactga ctttcaagac gagccctaca
      181 gacttgcttg gtttagtggc gacaagctga agcatatcgg acaattttct gacacctgtc
      241 ggattgtttc gtttgcccga ctttattcag cccggcaaat cgcctagatt attcctcgaa
      301 ttcaatcaat ttcccgaaac gagacaacaa aacacatgaa cgttacccat cttgaatgtg
      361 ccctctgtgg aactcgtcac gaggcacaca ggttgcacaa tctttgtgta gagtgcggca
      421 agccgttgct ggtccgttac gaccttgagc aggccaaaca gtctttgaca aaggaatctc
      481 tgaaggcgag acgtccagat ttgtggcgct atcgagaggt actgcccgtc gaggatgacg
      541 cgaatattgt ttcgtttggt gaaggttgga caccgttgct gcacgctgag cgattaggtc
      601 agtcagtcgg tatccctgag ctttacatca aggatgaagg tcagaatccg acgcagagtt
      661 tcaaagcgcg gggtatggcg gcggcggtct cgatggcgaa ggaactcggt gcctccaaac
      721 tcgccgttcc gtcagccggg aatgcggcag gggctttggc cgcttacgct gctcgtgcag
      781 gactcgagtg tttcatcttt atgccgaagg acactccgcg cgcaaacgtt gtcgagtgtg
      841 aacaaaccgg cgcgcatgtg acgctcatgg atggtttgat aactgactgt ggagcagagg
      901 tgggccgacg aaaagaagcg gaaggttggt ttgacgtttc gacgctcaaa gaaccgtacc
      961 gggttgaggg aaagaaaacg ctcggctatg aagtcgccga gcagctcgat tgggaactac
     1021 cggacgtgat catttatcca accggaggcg gtactggact catcggaatg tggaaagcct
     1081 tcgacgaaat ggaacagatg ggttggattg gttcgaagcg accgcgaatg atcacggtgc
     1141 aggccgctgg atgtgccccg attgtgcgag catttgaaga cggaaagcgg tttgcagatg
     1201 agtttcccaa tgctgcgaca acagcttcgg gtttgcgagt gccaaaggct attggcgatt
     1261 ttttgattct tgacgcgttg agagactctg gggggacggc cgtagcagtc actgatgaag
     1321 agttgatcgc agcgaccaaa gagatcggtg cagccgaggg agtgttttgt gcacctgaag
     1381 gtgccgcttg tttgccggcc ctcaagaagt tgattgcagc tggcagcgtc aagtcgagtg
     1441 atcgagtcgt tctcttcaat accggctcgg gagtcaaata catggagtcg tttgcttgag
     1501 agtcttaaat cgcatttcgg actgcgaatc tattgcccga tgaact
//
LOCUS       DATCGC010002105         1089 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_64694, whole genome shotgun sequence.
ACCESSION   DATCGC010002105 DATCGC010000000
VERSION     DATCGC010002105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1089)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1089)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1089
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64694"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1064)
                     /gene="sat"
                     /locus_tag="VIJ87_20010"
     CDS             complement(<1..1064)
                     /gene="sat"
                     /locus_tag="VIJ87_20010"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR00339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004781 - sulfate adenylyltransferase
                     (ATP) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HEY5446697.1"
                     /translation="MATGAFSPIDRFMGREDYRRVVAEMRLSSGQLFPIPITLPIRDD
                     IQVQLDSEVALLDARNEIVAVMYVDEIYEWDLEEAAQEVFKTTDVRHPLVAEMHRWGK
                     RNIAGRLKVLRLPQRYDFRELRLTPRQTRTHLEHLGSENVVAFQTRNPLHRAHEELTR
                     RAAEDIDGVLLLHPVVGLTKPGDIDYFTRVRTYRALANNYYEPNHMLLALLPLAMRMA
                     GPREALWHALIRRNYGANHMIIGRDHASPGNDSNGKPFYGPYDAQDLVKGVEEELGVK
                     AVPFGEFVYLPDEQRYEDVRKLKPNATVAQLSGTQARDWYRDGGVDLPDWFARPEVAA
                     AIAETYPPRFKQGFCIWFTG"
BASE COUNT          249 a          298 c          283 g          259 t
ORIGIN      
        1 aacccggtaa accagatgca aaagccctgt ttgaaccgcg gtggatatgt ttcagcgatc
       61 gcagccgcga cttccggacg cgcgaaccag tcagggagat caactccgcc atcgcgatac
      121 cagtcgcgtg cctgtgtccc tgacaactgg gcaaccgttg cgttgggttt tagtttgcgc
      181 acatcttcgt agcgctgttc gtcaggcagg taaacaaact caccaaaagg aaccgccttt
      241 acaccgagtt cctcttcaac tcccttgacg aggtcctggg catcatacgg accatagaag
      301 ggcttgccgt tggagtcgtt tccggggctc gcatgatccc gaccgatgat catatggttg
      361 gcaccgtagt ttcgtcggat caacgcgtgc catagagctt cccttggacc agccatgcgc
      421 attgccaatg gcaaaagagc gagcagcatg tggttcggtt catagtagtt gttggccagc
      481 gctctatacg tacgcactct tgtgaagtag tcgatatctc cgggcttcgt aagtccgaca
      541 accggatgga ggaggagtac gccatcgata tcttctgcag cccgcctggt caattcttcg
      601 tgagcccggt gaagcgggtt ccgcgtttga aacgcaacaa cattttcact cccaaggtgt
      661 tccagatgcg tgcgtgtttg tcgtggagtc aaacgtagtt ctcgaaaatc ataccgttga
      721 ggaaggcgca gcactttcaa gcgcccggct atgtttcgct taccccatct atgcatctcc
      781 gcaaccaacg ggtgtcggac gtccgtagtc ttaaagactt cttgggctgc ttcctcgaga
      841 tcccattcat agatttcgtc gacgtacatg acggctacga tttcattgcg tgcatcgagt
      901 agcgcaactt cggaatcaag ttgaacttga atgtcgtctc taatcggcaa agtgatggga
      961 atgggaaaca gttgaccact gctcaaacgc atttcggcaa ccacacgccg gtagtcttca
     1021 cgacccataa agcgatcgat cggactgaat gctccagtag ccatcaactc cagatcgcag
     1081 agcgagcgt
//
LOCUS       DATCGC010002106         1029 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_32639, whole genome shotgun sequence.
ACCESSION   DATCGC010002106 DATCGC010000000
VERSION     DATCGC010002106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1029
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32639"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            211..>1029
                     /locus_tag="VIJ87_20015"
     CDS             211..>1029
                     /locus_tag="VIJ87_20015"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024836.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acyltransferase"
                     /protein_id="HEY5446698.1"
                     /translation="MPILTTTTAPKMAGTILPFRTGDLRSLGLSHGRYIVRPAITSDE
                     IDAALRLRFAIFNVELGEGLAKSFANGKDEDVFDRQCEHVILIDRTSRQIVGTCRLRT
                     YDQAKSHSGFYSSARFNLSTLPNRLLENAVEFGRACIARGHRNKNSFRLLWRFLMGYS
                     IQTQKQYLFGCCSLKSQDPLAGGSLYEWLREAGYTHDEFRVIPRPGSKCIFYKTAQKS
                     SKVNLPSPLYTYLKRGAKICGLPALDRDFRTIDFFTLLDLQQSPVERPQGDMMGG"
BASE COUNT          260 a          253 c          255 g          261 t
ORIGIN      
        1 gggggatgtt catacactgc aaacgaaaca ccctgccagc aacatctgct tttcaaaagt
       61 gccccggttc tcaagcccgg ggcatttttc tgaagaatag aagcgcgatt tatttagtct
      121 ccctttaatc ggtctttaac cacttactca cacaccaatt ctaatctgcg aatacatctg
      181 ctggattaca aaccttgcag gaggtatcga atgcctatct taacgacaac caccgcgccg
      241 aagatggcgg gaacgattct cccttttcgc acgggagatc ttcgctcatt ggggctatct
      301 catggacgct acatagtgcg cccggcaatt acatcggatg agatcgacgc agccttgcgg
      361 ttgagattcg cgatctttaa cgttgaattg ggtgaaggat tggccaaatc ttttgccaac
      421 ggaaaagatg aagacgtgtt tgatcgccaa tgcgaacacg tgatcctgat cgatcgaacc
      481 tcgagacaga tcgtaggaac ctgtcgcttg cgaacctatg accaagctaa gtcacactca
      541 ggtttctatt cctcagcacg attcaacctg agcacacttc cgaatcgcct gcttgagaat
      601 gcagtggagt tcggtagggc atgtatcgca cgcggccatc ggaacaagaa cagcttcaga
      661 ctactgtggc gttttttgat ggggtattca atacaaactc aaaagcagta tctctttgga
      721 tgttgttcat taaagagtca ggatccgctc gcgggaggca gtctatacga gtggctccgc
      781 gaggcgggat acacgcacga tgagtttcgc gtcatcccca gacctggctc aaagtgcatc
      841 ttctataaga cggctcagaa gtcgagtaag gtgaacttgc catcgcctct gtacacgtat
      901 cttaaacggg gtgcgaagat ttgcggtttg ccggcattgg atagggattt cagaactatc
      961 gatttcttta ctcttctgga tcttcagcag tcccctgtgg aacgaccaca aggtgacatg
     1021 atgggtgga
//
LOCUS       DATCGC010002107         1477 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_427327, whole genome shotgun sequence.
ACCESSION   DATCGC010002107 DATCGC010000000
VERSION     DATCGC010002107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1477)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1477)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1477
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_427327"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1039
                     /locus_tag="VIJ87_20020"
     CDS             <1..1039
                     /locus_tag="VIJ87_20020"
                     /inference="COORDINATES: protein motif:HMM:NF044298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446699.1"
                     /translation="RYPWDGVVKLTVTPDRITNLTMNLRIPGWARNEPVPSSLYRFID
                     SNDEPVVLKVNGKPVPFTVDKGYASVKRKWKRGDVVELNLPMPVRRIQANDLVMADSG
                     RVALQRGPIVYTAEWPDNPGGHVRNLLLPNDSNLTAEFRPDLLNGVVVVKGDALSLSY
                     NQQGTVERKQQTFTAIPYYAWANRGVGEMAVWISNDAGSVRALPFPTVASTSKVTTSG
                     GQNPRAINDQNEPQSSRDPSASYFHWWPKKGTVEWVEYSFTQSSTVSEVELYWFDDTG
                     TGQCRVPKSWRLLYKDGESWKPVETSESFGIEKDRYNKVTFKPVTTDGLRLEVSLQPE
                     WSAGIQEWRAK"
BASE COUNT          385 a          350 c          384 g          358 t
ORIGIN      
        1 ccgatatccg tgggacggag tggtgaagct taccgttact ccggatcgca ttacgaacct
       61 cacgatgaat ttgaggattc ccggctgggc gaggaatgaa ccagttccga gttcgctcta
      121 tcgttttatc gacagcaacg acgagccggt agtgttgaag gtgaatggta agccggtacc
      181 gttcactgtc gacaagggct atgcgagtgt gaagcgcaaa tggaaacgag gcgacgtcgt
      241 cgaactcaat ttgccaatgc ctgtgcgccg gatacaagcg aacgatttgg ttatggcaga
      301 cagtggacgg gtcgcgcttc agcgtggccc aattgtttat acagctgaat ggccagacaa
      361 ccctggcgga cacgtcagga atttgttgtt gccaaacgat tcgaatctaa cagctgagtt
      421 cagaccagac ttgttgaatg gagtggttgt cgtcaaagga gatgctctca gtctttccta
      481 caatcagcag gggacagttg aacggaaaca acagacgttc acagcaattc cgtattacgc
      541 gtgggcgaat cgcggcgtag gtgagatggc tgtctggatc tcaaacgacg caggcagtgt
      601 ccgcgcactt ccatttccaa cagttgcctc cacaagcaaa gtaactacgt ctggtgggca
      661 gaatccacga gctattaatg atcaaaacga accgcagagt tcacgcgacc cgtcagcatc
      721 ctactttcac tggtggccga aaaagggaac cgtcgaatgg gttgaatact catttaccca
      781 atcatccaca gtttcagaag tagaactcta ctggtttgac gacacaggaa ccggtcaatg
      841 tcgagtaccg aagagttggc gactgctcta caaagatggc gagagctgga agccagtcga
      901 aacatctgag tcgtttggta ttgaaaagga tcgatacaac aaagtgactt ttaagccggt
      961 taccacagac gggttgcgac tcgaagtcag tcttcagcct gaatggtccg caggtattca
     1021 ggaatggaga gcaaagtaat ccatcagctg aaagcctact aagctaatac catcaaattt
     1081 gcactggttt tgtggaggat cttaccccac gcgctcttag ggcgttctct tgttcgatgt
     1141 tcatttaagc taataatgag cagcattgct gcgcggtaaa acttatttcg cgaaaacttt
     1201 cttgacttta gacatgcttg tgatctaagt tgcgcccaac ctccagtggt tttttacctt
     1261 agttcggaca agcattaagc gactgtcgtt gttgtgaagc tgccgagcgt gttcctccac
     1321 atcaatcgca gctagtccga tcaagcattg gggtcacccc gcatccgcgg tcttgcgaga
     1381 acaaaaccag taacgggttt cttggtcaaa gcgtgtgaga gacaactcca ttcgcagaac
     1441 cgtagttgat cgaattcttt cgatcgccac gtagttc
//
LOCUS       DATCGC010002108         2792 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_161192, whole genome shotgun sequence.
ACCESSION   DATCGC010002108 DATCGC010000000
VERSION     DATCGC010002108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2792
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161192"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(54..830)
                     /locus_tag="VIJ87_20025"
     CDS             complement(54..830)
                     /locus_tag="VIJ87_20025"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5446700.1"
                     /translation="MKKTDLVGLVLIILFVSGLSCAQGNLNIEEQKAKSAFMLNDLGI
                     AHLKAELYNEALEDFKQSIALKPNFANPYNNLAMTYKLLGQTGLARAALQKAIHIDPN
                     YAEAHFNLGVLYDNERSYEAAVESLKLAILLQPDFAQAHNSLGVAYSDWGRRAEAVNA
                     YRQAIRLKPDYAEAYNNLGTTEAERGRFEQGISAFMLAIELKPKLALAHYNLGVAFLK
                     MKNREAALEQQRLLSGVDERLANKLFDGIYRGKVLHVGIR"
     gene            1107..>2792
                     /locus_tag="VIJ87_20030"
     CDS             1107..>2792
                     /locus_tag="VIJ87_20030"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEY5446701.1"
                     /translation="MSIAPKCFDLLVVLVENGGHLLEKEELLARLWPDQFVEESNLSF
                     QVSSLRKILGEGLNGEHYIETVPKKGFRFVATIDDNRGPETDSMLERHDGALSTVRPD
                     DASQVSPAGTGKVTTDSASHAHRTRWPIVIVSVLVIGALGVAYRLWPRRPKVAPANPI
                     RTVAVLPFKPISADSRNESLEMDLTATLIGRLSQIKQIVVPQLSAVRQYTDIHQDAIK
                     AGRELGAEAVLEGSTQKEGTHLRVTVRLINVQTGATIWRDKFDEDASNILKLKDSIAE
                     RVVQELSINNLTGEEREQLIKHYIDPGAYEAYRDGSYIFNKDSREIFENRRKGLKLYE
                     SAIEKDPKFALAYVGIAEFYLNGAPLLTNLSPMERIPKAREAILKALELDNTLAEAHN
                     ALAELKYQYDFDWSGAEEQFEQAISLNPNLAYIRLAHGWYLMCVGNFEEADAEFEKAQ
                     QLDSHSLGITRTRGMLLLYERQYDKAIKHYLRMREVEPDSHRTNMYMSMAYQGKGMYA
                     EAVEEFLEHGRIVGFLNPKETLGLREAFQTSGWQGYLRQRLVVANEKPKGTPTI"
BASE COUNT          697 a          653 c          736 g          706 t
ORIGIN      
        1 cgccgctcaa gcttgtcttc acatccacct tcaaggtctg caagaggatg cgatcacctg
       61 atgcccacgt gaagtacttt gcctcgatag atcccgtcaa agagtttgtt ggctaagcgc
      121 tcatcgacac cactgagcaa ccgttgttgt tcgagcgccg cttcacggtt tttcattttc
      181 aaaaaggcga cgcccaggtt gtagtgtgcg agtgccaatt tcggtttcag ttctatggcg
      241 agcatgaacg cgctgatccc ttgttcgaaa cggccgcgct cggcttctgt cgtgcctaaa
      301 ttgttgtatg cctccgcata atccggcttt agtcgaatgg cctgccggta tgcgtttact
      361 gcctccgcgc gtcttcccca gtcactgtag gccacgccta aactgttgtg tgcttgagcg
      421 aagtctggct ggagcaaaat cgccagcttg agagattcga ctgcggcttc atagcttcgt
      481 tcgttgtcat aaagtacccc gagattgaag tgagcctcgg cgtaattcgg atctatgtgt
      541 attgcttttt gaagggcggc ccgcgccaga ccagtttgcc ccaagagttt ataagtcatg
      601 gccagattgt tgtaggggtt ggcaaagttt ggtttgagtg cgattgactg tttgaaatct
      661 tccaacgcct cgttgtaaag ctccgcttta aggtgcgcta tgccgagatc attaagcata
      721 aatgcacttt tagctttctg ctcttcgatg ttaaggttgc cttgcgcgca ggatagacca
      781 gacacgaaga ggataatcaa gacgagccca actagatcgg tttttttcat aggtctcctt
      841 cagttacggt tcgtgcctga acaggtgagt gttccgctgc taccaaaaac tcgagtcatc
      901 accaaggcac ttgtttggcg gtcacttccc attagcgaag tccagacagt actgatcagg
      961 ccgcaaaagt gtcctaagcg gactcataga atttccttag caaaccttta agaatcctta
     1021 cgatggttgc ctcaaggccc atatatgaat tcggcccgtt ccgtttagat ccaagcgaac
     1081 gcagactgac gcattctggt gagccagtgt cgatcgctcc caaatgtttt gacttgctgg
     1141 tcgtgttggt cgaaaacggc ggccatttgc tggaaaagga agaactgtta gcgcggctgt
     1201 ggcccgatca atttgttgaa gagagtaatc tttcgttcca agtctccagc ttgaggaaga
     1261 ttctgggaga gggattgaat ggcgagcact acatcgagac ggtcccgaag aagggttttc
     1321 ggttcgtcgc aaccattgac gataatcggg gacctgaaac cgattcaatg cttgaacgtc
     1381 acgatggagc tttgtcgacg gtaaggccag acgatgcatc ccaggtttcg ccggctggta
     1441 ctgggaaggt cactacagat tctgcgtctc acgcacaccg aacgcgctgg ccgatagtca
     1501 tcgtcagtgt tctggttatt ggtgctctcg gtgtcgcata tcggttatgg ccgaggagac
     1561 ccaaggtcgc gcccgccaac ccgatcagga cggttgccgt cttgcctttc aaacctatta
     1621 gcgccgacag caggaacgaa tcccttgaga tggaccttac ggcaactctg atcggaagac
     1681 tttcgcaaat caagcaaatt gtagtgccgc aactgagcgc agttcgccag tacaccgaca
     1741 ttcatcagga cgctatcaaa gctggtaggg aactcggggc tgaggctgtc ttagagggaa
     1801 gcactcaaaa ggaaggtact catttaagag tgacggttcg gttaataaac gtgcagaccg
     1861 gcgcaacgat ttggagagat aagttcgacg aagatgcttc caacattctc aaacttaaag
     1921 actccattgc tgaacgtgta gtgcaagaac tgtcgataaa caatctgaca ggcgaggaac
     1981 gggagcaatt gataaagcat tacattgatc caggcgcata tgaagcttac cgtgatggta
     2041 gttacatttt taataaagac tcgcgcgaaa tttttgaaaa cagacggaag ggcctcaagc
     2101 tttacgaatc ggcgattgag aaggacccga agtttgcgtt ggcatatgtt ggaatcgccg
     2161 aattctattt aaacggcgcg ccccttctta cgaacctttc gcccatggag cgtattccga
     2221 aggcgagaga agcaatactc aaggctctgg aactggacaa tacgttagca gaagcccata
     2281 acgcacttgc ggagttgaag tatcaatatg attttgattg gtcaggcgcc gaggaacagt
     2341 tcgaacaagc tattagtctt aatccgaacc tcgcttatat tcgcttggcc catggctggt
     2401 atctaatgtg tgtaggtaat tttgaggaag ctgatgctga gtttgaaaag gcgcagcagc
     2461 tggattctca ctcccttggg atcacccgaa cgagaggcat gctcctactt tatgagcggc
     2521 aatacgacaa agcgatcaag cactatctga gaatgcgcga agttgaacct gactcgcata
     2581 gaacaaatat gtacatgtcg atggcgtatc aggggaaagg tatgtatgca gaagctgtcg
     2641 aggagttttt agaacacggt cgcattgtcg gtttcttaaa tccaaaagag acattgggat
     2701 tgagagaggc tttccagact agtggctggc agggttattt acgtcagcga ctcgttgtcg
     2761 cgaatgagaa gccaaaggga acgccgacca tt
//
LOCUS       DATCGC010002109         1016 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_97594, whole genome shotgun sequence.
ACCESSION   DATCGC010002109 DATCGC010000000
VERSION     DATCGC010002109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1016)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1016)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1016
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97594"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1016
                     /locus_tag="VIJ87_20035"
     CDS             <1..>1016
                     /locus_tag="VIJ87_20035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446702.1"
                     /translation="IACFLAALSPQFAYFSVLLLPDSLIVFPILLAIYLVVTSRRRLS
                     WSRLVVAGILIGVSCWLRANALLLPLFVGVAAALTTTRDKRLSAAAAVIVGAILAIAP
                     ITIKNAIIFHRFIPLSLGSGQTLLEGLADYDPKGTLNIPNTDLGLSRQEAQWYGRPDY
                     AGQLFGEDGIERDRMRVRRGLKTIAEHPVWFASVVGRRALASTRLDPVPVLQPETPVS
                     HRLDDGAAKIAWEKNPSELFSTGSHSPRATFTVVENGWLRIESDETNYGSQLSSESIG
                     VVRYHDYVFKLPFKLEQQRAVVRITDSSGRNVLASTIVDVSEGLSPHDQPVSQLAIPF
                     VSAN"
BASE COUNT          227 a          275 c          259 g          255 t
ORIGIN      
        1 ttatcgcctg ttttctcgca gctctgtcac cacagttcgc ttacttttca gtactgctgc
       61 ttcccgactc actgattgtc tttccgattc tgctggccat ctatctcgtg gttacgtctc
      121 gtcgacgatt aagttggtcg cgactcgtcg tcgcgggaat tctaatcgga gtgtcctgtt
      181 ggttgcgcgc caacgcattg ttattacctc tcttcgttgg cgtggcggca gcgttaacca
      241 caaccaggga caaacgacta tcggccgctg cggctgtcat cgttggcgca atcctcgcga
      301 tcgcgccaat cacgatcaag aatgccatta tcttccatcg ttttattccg ctttcacttg
      361 gtagtgggca aacacttctc gaaggacttg ccgactacga tcccaaaggt accctcaaca
      421 ttcccaacac tgatcttggg ttgtcgcggc aagaagctca gtggtacgga aggccagatt
      481 atgccgggca gcttttcggt gaagatggca tcgaacggga ccggatgcgc gtaagacgtg
      541 gacttaagac aatcgccgag catcccgtgt ggtttgcaag tgtcgtggga agacgggcat
      601 tagcttcaac gcgacttgat ccagttcctg tattacaacc ggaaactcct gtatctcacc
      661 ggctggatga tggcgcagca aagattgcct gggagaagaa tccatcggaa ttgttcagca
      721 caggcagcca ctcgccacgt gcaactttca ccgtcgtcga gaacggctgg ctaaggattg
      781 agagtgacga gacgaactat gggagccaac tttcatcgga atcgatcggc gttgttcgat
      841 accacgacta cgtcttcaaa ctccctttca aattagaaca gcagcgagcg gtcgtaagaa
      901 tcaccgactc ttcaggtagg aacgtgcttg cctcgacgat cgtcgacgtg tcggaaggat
      961 tatctccgca tgatcaaccc gtaagccaac tggcgattcc atttgtcagt gcaaac
//
LOCUS       DATCGC010002110         1012 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_230792, whole genome shotgun sequence.
ACCESSION   DATCGC010002110 DATCGC010000000
VERSION     DATCGC010002110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1012)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1012)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1012
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230792"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(165..>1012)
                     /locus_tag="VIJ87_20040"
     CDS             complement(165..>1012)
                     /locus_tag="VIJ87_20040"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEY5446703.1"
                     /translation="ASRMSFDHAKSNFFRSARHGLDAQFNWIDGESYSAPSLILDHLL
                     PLARRGLQTSQVSSGDVDQLLGIIEERVRSRQTGARWTLKSLSAISDSTPRDVRGRRL
                     TAAMLANQQTGEPVHLWPLNEAVQSGDWEHGYQTVGQFMSTDLFTVQPDDLIDLAASV
                     MDWRHIRHVPVEDSDGRLVGIVSHRALLRLLINETNRQVLTVREIMVSNPVTVSPATS
                     TLEAIEVMRTNRVGCLPVTENDQLVGIVTSYDFLEASAELFEEHLRKPSKPQHRIKAA
                     ASGRA"
BASE COUNT          247 a          279 c          256 g          230 t
ORIGIN      
        1 aacaggtgag gccgtgcccc cgaaggggct acgtctcaaa gcccaggctt gccgcttctg
       61 ctaccacgct cggcatcagc ggcgtcgtgt cggccttcga tgcggtcacc ggtaagcttg
      121 tgtggcagaa aaccggcacc ctctgaacaa ccgttaaaga tttcctaagc ccgacctgac
      181 gctgcagctt taattcgatg ctgaggcttg ctcggttttc gcagatgttc ctcaaacaat
      241 tcggctgatg cctcgagaaa atcatacgaa gtaacaatac caaccaactg atcattctca
      301 gtaacaggaa gacaaccgac ccggttggtc cgcatcactt cgatcgcttc aagtgtcgag
      361 gtggcaggcg agacagtcac tggattggat accatgatct ctcgaactgt cagcacttgc
      421 ctattggtct cattaatcaa gagacgaagc aatgcacggt gactcacaat gccgactagc
      481 cgtccgtcgg agtcctcgac cggcacgtga cgaatgtgcc gccagtccat cacgcttgcg
      541 gcgaggtcga ttagatcgtc cggctgaact gtgaagagat ccgtagacat gaattgacca
      601 accgtctgat atccgtgttc ccaatcgcct gactgcacag cttcattcaa cggccaaaga
      661 tgaaccggtt cacctgtttg ttgattggct aacattgctg cggtcaatct ccttccccga
      721 acatctcttg gagtcgaatc agatattgcg gacaaagact tcaaggtcca acgtgcgcca
      781 gtttgtcgac tgcgaacgcg ttcttcaatg atgcctagta actggtcgac atccccgcta
      841 ctcacttgcg aagtttggag tccacgccga gcaagtggca gcaaatgatc gagtatcaat
      901 gaaggggcac tgtagctttc tccgtcaatc caattgaact gagcgtcaag gccatggcga
      961 gcggaacgga agaagttcga tttcgcatgg tcgaagctca tacgactggc aa
//
LOCUS       DATCGC010002111         1977 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_230803, whole genome shotgun sequence.
ACCESSION   DATCGC010002111 DATCGC010000000
VERSION     DATCGC010002111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1977)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1977)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1977
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230803"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1109)
                     /locus_tag="VIJ87_20045"
     CDS             complement(<1..1109)
                     /locus_tag="VIJ87_20045"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEY5446704.1"
                     /translation="MEDIANPGGKHRPLVTLVPLWLVFTNHKGTKTQIERMNDMNFSE
                     LGLDAAQLRAIESLGYTDPTPIQRQAIPVIHDGQDLIGCAETGTGKTAAFLLPILKRL
                     SDTRRPGVRVLVLAPTRELALQIQKNYNELNTVKSNRSVILIGGANIKTQFADLRRGV
                     SVVIATPGRLLDLTERGALNLSHVEVLVLDEADRMLDMGFLPAIRRVLSLVPEKRQTL
                     LFSATLSPEIERLARSTMKQPKLIEVSRRGQAASLVEQTAYQVAAESKTALLLDLLER
                     ESFERVLVFARTRRSAERLSHILAARDHQVNRIHSDRSQPQREAALRGFRDGRTRVLV
                     ATDIAARGLDVDSVSHVINYDVPSAPEDYVHRIGRT"
     gene            complement(1081..1371)
                     /locus_tag="VIJ87_20050"
     CDS             complement(1081..1371)
                     /locus_tag="VIJ87_20050"
                     /inference="COORDINATES: protein motif:HMM:NF012305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HEY5446705.1"
                     /translation="MKLYVGNLAFATSSQDLQELFAGAGTVESASIVEDRETGRSRGF
                     GFVEMSSKEEGEAAISQFNGKEVGGRALKVNEAKPREPRSGGGGGGHREPRW"
BASE COUNT          497 a          522 c          487 g          471 t
ORIGIN      
        1 gtccgaccga tgcggtgcac atagtcttca ggtgctgatg gaacgtcgta gttgatcacg
       61 tgtgataccg aatcaacgtc caatcctcgc gctgcgatgt cagtcgcaac caggacgcgt
      121 gtacgtccat cacgaaaacc gcgcaatgcg gcttcgcgtt gtggctggct tcgatcggag
      181 tgaatacgat tcacctggtg atcacgcgcg gcaagaatgt gtgacaaacg ttcggctgaa
      241 cgcctggtcc ttgcaaacac gagcacccgc tcgaagcttt cacgttccaa caaatccaat
      301 agcaaagccg tcttggattc tgcagcaacc tggtaagcag tttgctcgac caagcttgca
      361 gcttgaccgc gtcgacttac ctcaatcagc ttaggctgct tcattgtcga acgagctaat
      421 cgttcaatct ctggggacaa tgttgctgag aagagcagtg tttgtctttt ctcaggtacc
      481 agcgaaagta ctctacgtat cgccggcaag aatcccatgt cgagcattcg gtcggcttca
      541 tcgagcacta aaacttccac gtgcgaaaga ttgagcgcgc cacgctctgt caaatcgagc
      601 aagcggcccg gagtcgcgat tacaacactt acgccacggc gcaaatccgc gaactgcgtt
      661 ttgatgtttg cgccaccaat cagaataacg ctgcggttac tcttaactgt attcagctcg
      721 ttgtagtttt tctgaatctg taaagccaat tctcgggtcg gtgctaacac cagcacacga
      781 actcctggcc ggcgagtgtc ggacagtctc ttaagaattg ggagcaagaa agcggccgtc
      841 ttaccggtgc ctgtttcagc acaaccgatt agatcctggc catcatgaat gacagggatc
      901 gcctgtcgtt gtatcggggt tgggtctgta tacccaagag actcaattgc gcgcaactgt
      961 gcagcgtcga gtcccagttc tgaaaaattc atatcgttca ttctctcaat ttgtgtcttt
     1021 gtgcctttgt ggttagtgaa taccaaccac aaaggcacca aagtcactaa cggacggtgc
     1081 ttaccacctg ggttcgcgat gtcctccacc gccgccaccg gaacgtggtt cgcgaggctt
     1141 ggcttcgttt actttcaacg ctcggccgcc gacttcctta ccattgaact ggctaatagc
     1201 agcttcgcct tcttccttcg aagacatttc gacaaaacca aaaccacgtg accgaccggt
     1261 ttcgcgatct tcaacaatac tcgctgactc gacggtaccg gctcctgcaa aaagttcctg
     1321 cagatcctgg cttgaggtcg cgaacgcgag atttccaaca tagagtttca tagacatatt
     1381 tgtacctttt ccctctgtag ggaacaaaag aagctgcgaa tcggaatggc ttcggagaaa
     1441 cggtagtcag acgaagggac cggagttcgg atgctcttga aatgagcggc ttctgaaatt
     1501 aacaacagcc tgctctcgaa ctatccaaac gaccagcgcg gactaacttt ttgcgcgggg
     1561 cgcatcaccg tcgatgcgcg agagaaggat taaccgtgcg tcactatgca ctattaagca
     1621 ctaattagca aggcgagcta attccctagc tgagtggact ttatcccaca ttttgctcgg
     1681 aattagtcgc aatgccctgc tcaaggtgag tgacagcggt actaagatga ccgaaacccc
     1741 taattgtatg cccggagcca atcagaacga ttcccgaaac cagacaattg tgtaacgcaa
     1801 actgttagtt agtgttgagt gagtggccat tcaagcccaa cgcaaactaa cagtttgcgt
     1861 tacagatcgg gcccctcctt agaagactcg atcaacagtg gtaggatcag catctattag
     1921 gaagtaaaaa tgcggatgct gacacgaaac agaacaaaag cctggtggag tgcgctt
//
LOCUS       DATCGC010002112         1346 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_130068, whole genome shotgun sequence.
ACCESSION   DATCGC010002112 DATCGC010000000
VERSION     DATCGC010002112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1346)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1346)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1346
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_130068"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1346
                     /locus_tag="VIJ87_20055"
     rRNA            <1..>1346
                     /locus_tag="VIJ87_20055"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          339 a          310 c          401 g          296 t
ORIGIN      
        1 agcctgtaga ctgctcgggg ataaaatacc gggtaaggtc gaaaggcgac gggaccttga
       61 ggccacggcc gatggggatt gactgatact acgcttccaa gaaaagcttc gtagttagca
      121 tgtgaagtgc ccgtaccgta aaccgacaca ggtgggaaag atgagtattc taaggcgcgc
      181 gagttaaatc tctctaagga actcggcaaa ttaaccccgt atcttcggta gaaggggtac
      241 cgcgcaagcg gtcgcagtta attgcgtcaa ccgactgttt agcaaaaaca cagcactctg
      301 ctaagtcgca agacgacgta tagggtgtga cacgtgacca atgcggaaag gtgaaagtct
      361 agggtgcaag ctctggatct aagcccccgt gaatgtcggc cgtaactata acggtcctaa
      421 ggtagcgaaa ttccttgtcg ggtaagttcc gacccgcacg aatcgtgtaa cgagttgacg
      481 actgtctcgg agagaggcct ggtgaaattg tagtggcggt gaagatgccg cctacccgca
      541 gcaggacgga aagaccctat gcacctttac tgtaagctgt tattgtcgct tgactttcaa
      601 tacgtagaat aggtgggaga cttcgaagcc cggttccagg atcgggctga gtcacaacgt
      661 gaaataccac tttttgttag ttaggcgtct aacctcgcac cattatctgg tcgtgggaca
      721 gtgatagcag gtcagttttt ctggggcgga atcctcccaa agagtaacgg aggattacga
      781 aggttccctc ggcccggtcg gtaatcgggc tatagagcgc atgagtataa gggagcttta
      841 ctgtgagacc aacaagtcga gcagttgcga aagcaggttc aagtgatccg gtggttgaat
      901 gtggaatcgc catcgctcat aggacaaaag gtacgctagg gataacaggc tgatcgcgcc
      961 caagcgttca cagcgacggc gcggtttggc acctcgatgt cggctcatca catcctgggg
     1021 ctggagaagg tcccaagggt tcggctgttc gccgattaaa gtggtacgcg agctgggttc
     1081 agaacgtcgt gagacagttc ggtcctctat ccgctgtggg cgtctgtgat ttgaggggtt
     1141 cattctctag tacgagagga ccgagaatga cgaacctctg gtgttccggt tgtcacgtca
     1201 gtggcagcgc cgggtagcta tgttcggaag ggataagcgc tgaaagcatc taagcgccaa
     1261 gcccatccca agataagatc acaatccatc gcaagatggt gcaaggtccg ggtagaccac
     1321 ccggttgata ggccagaatt gtaatc
//
LOCUS       DATCGC010002113         1226 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_97632, whole genome shotgun sequence.
ACCESSION   DATCGC010002113 DATCGC010000000
VERSION     DATCGC010002113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1226)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1226)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1226
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97632"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..198)
                     /locus_tag="VIJ87_20060"
     CDS             complement(<1..198)
                     /locus_tag="VIJ87_20060"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEY5446706.1"
                     /translation="MIAIQRILCPTDLTTESDEALRYAVALSSVYNAKLFVLYCKKTE
                     TNHDNNGHNEQSADTNSVFITS"
     gene            425..1159
                     /locus_tag="VIJ87_20065"
     CDS             425..1159
                     /locus_tag="VIJ87_20065"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY5446707.1"
                     /translation="MTQLFQQTKITEAVFIARGLSKAYRMGDIDVDALRSVNLDLYKG
                     ELVVLLGASGSGKSTLLNILGGLDVPTSGEVFYRDHNLSIDDDAELTRYRREHVGFVF
                     QFYNLIPSLTALENVELVTDIAENPMPADEALRLVGLGDRMHHFPAQLSGGEQQRVAI
                     ARAVAKRPEVLLCDEPTGALDYSTGKLVLEAIERVNRELGTTTAIITHNVAIADMADR
                     VLRMRSGQIVEVRRNKKKASPKDLVW"
BASE COUNT          288 a          311 c          337 g          290 t
ORIGIN      
        1 tgaagtgata aacactgaat tcgtgtcagc agattgttcg ttgtggccat tgttgtcgtg
       61 attcgtttct gttttcttgc agtagagaac gaagagcttc gcgttgtaga cggatgacag
      121 cgccaccgca taacgcaagg cctcgtccga ctccgtcgtc aggtctgtgg gacagagaat
      181 tctttgaata gcaatcatga tggctctcct tcacaaattg gttcgcaacg cttgtgcccg
      241 agccgaagac ctgattttca gccgaatctt gcaaacgttg cggaggcgtg agcggccgct
      301 gcggaaagtt ccagtttgct gcgcgaaagc tcgcagccaa acgcagtaag ttcaattcct
      361 ctacgactta tcgtccgcaa atcttcgctg ccccgagggt atgactcttg cacctcgaag
      421 agatgtgacg caactcttcc agcaaacgaa aatcactgaa gcagtcttca tcgcgcgcgg
      481 gctctcgaag gcttaccgga tgggggatat cgacgtcgat gcgttgcgat ctgtgaatct
      541 ggacctctac aaaggtgaac tggtggtatt gctcggtgcg tctggcagcg gcaagtcgac
      601 tctgctgaac atcctcggtg ggttggatgt tccaaccagt ggggaagtct tttaccgcga
      661 tcacaatctg agcatagatg atgacgcaga gttaacgcgt taccgccggg aacacgtcgg
      721 atttgttttt caattctaca acctgattcc gagcttgacc gcgcttgaga acgtcgaact
      781 ggttacagac attgctgaaa atcctatgcc cgcggacgag gctctgcggc tagttgggct
      841 cggtgaccga atgcatcact ttcctgctca gctctccggt ggtgagcaac agcgagtcgc
      901 gattgctcgt gccgtagcga aacgacctga ggtgttgctc tgcgatgaac caaccggggc
      961 actcgactac tcgaccggga agttggtact cgaggcgatt gaacgagtca accgggaatt
     1021 aggaactacc accgcaatca ttacgcataa cgtcgcaatc gccgatatgg ctgaccgtgt
     1081 gttacgaatg cgcagcggtc aaatcgtaga ggtgcgccgc aacaaaaaga aagcctcacc
     1141 aaaggactta gtctggtgaa gacgcttgat cgaaaactga ttcgcgaagt tattcacttg
     1201 cgtgggcagg tactagccat cacgct
//
LOCUS       DATCGC010002114         1120 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_495346, whole genome shotgun sequence.
ACCESSION   DATCGC010002114 DATCGC010000000
VERSION     DATCGC010002114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1120)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1120)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1120
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_495346"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..372)
                     /locus_tag="VIJ87_20070"
     CDS             complement(<1..372)
                     /locus_tag="VIJ87_20070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446708.1"
                     /translation="MQEVTRRRAFGIGLRARVPLVARITAFVLLAAGVGFVGVSYYKL
                     RNRDKFVLSKKPAELSKDVTGIVEGYEQRMTKQDGSYLLVKASKDITFSDSHHELENV
                     SVGVYPASGNVPDQISATRAIY"
     gene            complement(458..>1120)
                     /locus_tag="VIJ87_20075"
     CDS             complement(458..>1120)
                     /locus_tag="VIJ87_20075"
                     /inference="COORDINATES: protein motif:HMM:NF037628.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHHA1 domain-containing protein"
                     /protein_id="HEY5446709.1"
                     /translation="SHVAVIAGEGWHRGVIGIAASKIAERINRPCVVFSIEGDVAHGS
                     GRSIAAYHLLDGLTSCADLFEKFGGHSHAAGVTIRLERIDQLRERLNQHAASCLTADD
                     LEPSVTIDMELRAEDVTFGLTRELQSMEPYGAGNTRPVFCSRGLRLVSEPVVMKDRHL
                     KMRLAGANNRPLEALWWNCIEPGQQTPELKGSIELAYTIETSVWNDEIKVQLNVADLR
                     QQ"
BASE COUNT          271 a          329 c          241 g          279 t
ORIGIN      
        1 ataaatcgca cgtgtcgctg agatttgatc cggcacgttt ccggaagccg gatagacccc
       61 aacgcttaca ttctcaagct cgtgatgact atctgaaaac gtgatgtcct tcgaagcttt
      121 cacgagtaga tacgaaccat cctgcttggt cattcgctgc tcataaccct cgacgatacc
      181 agtcacatct tttgagagtt cagcaggctt tttcgacagc acaaacttgt ctctattgcg
      241 cagtttgtaa tacgagacgc ccacgaatcc gacaccggcg gcaagcagca caaacgcagt
      301 gatacgggcc acgagtggaa ctcgcgctcg gagtccaatt ccgaaggctc gtcttctggt
      361 tacttcttgc atatatcttg tgcttggtgc tttttccctc taatcacctg gtagaccttc
      421 agcaaaccaa caaagtacaa agctcaaagc actaagctca ctgttgtctc aagtccgcca
      481 cattcaactg cactttaatc tcatcgttcc aaacgctcgt ctctattgta taggccagtt
      541 cgatgcttcc ttttaactcg ggcgtttgct gtcccggctc aatgcagttc caccagagtg
      601 cttcgagtgg tctattatta gctccggcaa gtcgcatctt caggtgtcga tctttcatca
      661 caacaggctc tgatactagc cgaagtcccc tcgagcaaaa cactggtcga gtattccctg
      721 ctccgtaagg ttccatcgac tgaagttctc ttgtcagacc aaacgtgacg tcttctgctc
      781 tcaactccat atcgattgtc accgacggtt caagatcatc ggcagttaag caggaagctg
      841 catgctgatt cagccgttct ctcaactggt cgatgcgctc cagtctgatt gtgaccccag
      901 ccgcgtgcga atgaccacca aacttctcga acaaatcagc gcaactggtc aagccatcca
      961 gcaaatggta cgcggcaata ctccgcccgg aaccatgagc gacgtcaccc tcaatcgaaa
     1021 atacgacgca cgggcggttg atgcgttcgg cgatcttcga cgctgcgata ccaattacac
     1081 ctcgatgcca cccctcacct gcgataacag caacatggga
//
LOCUS       DATCGC010002115         1427 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_394664, whole genome shotgun sequence.
ACCESSION   DATCGC010002115 DATCGC010000000
VERSION     DATCGC010002115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1427)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1427)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1427
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_394664"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1427
                     /locus_tag="VIJ87_20080"
     CDS             <1..>1427
                     /locus_tag="VIJ87_20080"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY5446710.1"
                     /translation="DPIFDPTSPEFIGTTTAFNPFGDYRVPIAGNAATVNFARVHPKD
                     LDVSKLATLDATLYTTSLFKLPAGGVGFAFGGQFRRESIDEEPDALNVAGDVAGNSPV
                     PLVSGGRKSYAFYAETDIPIFSPLYKVPGFYALDFTAAGRYEDFKNNDTNVLVPKLGL
                     RWQPFDETLTLRATWGEGFRQPTLEELFAAPISTLTVSHDPLKGGQFESETNTLIVSN
                     PDLQPEDSRSFSGGLVYTPKYVPGLTLTIDLWDIERTGVVAAPTTDQVLAREASGTLL
                     PGEVVERDAGGFITRVIIPNQNLGAQTARGVDLSFQYIIPTEWGTFTWLTQATYLDEF
                     LFPQFHPGNLAGRTTDEGASNEGYYKWLGTSRIDWNWNHFDIVGTARYIDGFHEHTAN
                     LREHYVGQTWLFDVQASYDFNGLFPPPETPPVPGYSKDAKDVARGKDGKATQSAAEQT
                     TNYGVSLCQHLFRDTTLTIGCNNVF"
BASE COUNT          321 a          390 c          376 g          340 t
ORIGIN      
        1 agatcctatc ttcgatccca cgtcgcccga attcatcgga acgacgactg cctttaatcc
       61 ttttggcgat tatcgcgtcc caatcgctgg taatgcggct acagtaaatt ttgccagggt
      121 ccatccaaaa gacctggatg tctcgaagtt agccacgctg gatgctacat tgtacacgac
      181 atctcttttc aaattgccgg ctggcggtgt cggcttcgct tttggcggtc agttccgccg
      241 cgagtcgatc gacgaagagc cggatgccct caacgtagcc ggcgatgtcg cgggtaactc
      301 acccgttcct ctggtaagcg gagggagaaa gtcctatgcc ttttacgcgg aaacggacat
      361 cccgatcttc agcccccttt acaaggtgcc gggcttttac gccttggact ttaccgctgc
      421 aggtcgctac gaggatttca agaacaacga tactaatgtt cttgttccga agttgggact
      481 tcgttggcaa ccatttgacg agactctgac tcttcgcgca acctggggcg aaggcttccg
      541 tcaaccaaca ctggaagagt tgtttgccgc ccctatctca acccttacgg tatctcatga
      601 tccgctaaag ggtggacaat tcgagtcgga gacgaacacg ttgattgtca gtaatcccga
      661 tcttcagcca gaggactccc gttcctttag cggaggcctt gtctacactc caaagtatgt
      721 gcccggcctc acccttacta tcgatttgtg ggatattgag cggacgggag tggtagcggc
      781 tcctactact gaccaggtgt tagcgcgcga ggcgagcggg acattattgc caggcgaggt
      841 cgtggagcgc gatgcgggag gattcattac gcgcgtcatc attcccaacc agaacctggg
      901 tgcacaaacc gcgcgcggag tggatctcag ttttcaatat atcataccaa cagagtgggg
      961 aacgttcacc tggctgacac aggcgactta tctcgatgag tttctgtttc cgcagtttca
     1021 ccctggtaac ctggctggtc gcacgaccga cgagggtgcg tccaatgagg gctattataa
     1081 gtggctcggc acgtcacgaa tcgattggaa ctggaatcac ttcgatatag tgggtactgc
     1141 caggtatatc gatggtttcc acgagcacac cgctaacctg cgcgagcact acgtgggtca
     1201 gacatggcta tttgatgtcc aagcatctta tgacttcaat ggcctgtttc caccccccga
     1261 aactccaccg gttcctggtt actcaaaaga tgcgaaggac gtggcgagag gcaaagacgg
     1321 gaaagcaacg caatcggcgg ctgaacagac aaccaactat ggcgtttcgc tctgccagca
     1381 cctcttcagg gacacgactc ttaccatcgg ctgcaacaat gtatttg
//
LOCUS       DATCGC010002116         1311 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_495367, whole genome shotgun sequence.
ACCESSION   DATCGC010002116 DATCGC010000000
VERSION     DATCGC010002116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1311)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1311)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1311
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_495367"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            44..>1311
                     /locus_tag="VIJ87_20085"
     CDS             44..>1311
                     /locus_tag="VIJ87_20085"
                     /inference="COORDINATES: protein motif:HMM:NF025141.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY5446711.1"
                     /translation="MRRQGNGFAPDTDQVRDGSRITPKMIPPGMRSGHDISLDIQLDA
                     GLIVDGLTSKTHPVDIERTDPRSAHIHLKDTATIPNKDFVLRYDVAGGSIQDALLTHR
                     SDKGGFFTMILQPPDRVTVEDVTPKELVFVLDTSGSMEGFPIEKAKETMKLALDSLYP
                     SDTFNLITFAGDTEILFPEPVPATKENLRKAQAFLNGRSGGGGTEMMTAIKAALEPSD
                     DQKHIRIVCFMTDGYVGNDMEIVSEVQKHQNARVFAFGIGESVNRFLLDKMAEAGRGE
                     VEYVALNDDGSAAARRFHERVRNPLLTDISIEWNGLPVADVYPKNIPDLFSAKPLILS
                     GRFNAPGNGTIKLRGKMAGNDFVREIPVSFPETMASHDVLSSLWARRRIDDLMAQDYS
                     GAQSGEMQPELKQTITQVGLEYRLMTQFTS"
BASE COUNT          328 a          306 c          355 g          322 t
ORIGIN      
        1 tcccatggtc gtaggcccac gttacatacc cggtgcgccg aacgtgcgta gacagggaaa
       61 cggatttgct ccggacacgg atcaagtgcg ggatggctcg cggatcacgc caaagatgat
      121 ccctcctgga atgaggagcg gtcatgatat ttcgttagat attcaactcg acgcgggatt
      181 gatagtagat gggcttactt ccaaaactca tccggtcgat attgagcgaa ctgatccacg
      241 cagcgcacac atacatctga aagatacagc gacaattccc aacaaggatt ttgttctccg
      301 ttacgacgta gctggtggat cgatccagga tgcgctgcta actcatcgtt ctgacaaggg
      361 tggtttcttc acgatgattc ttcagcctcc tgatcgcgtg acggttgaag atgtaactcc
      421 gaaagaattg gtgtttgttt tagacacttc gggttcgatg gaaggtttcc ctatcgagaa
      481 agcgaaggaa acgatgaagc tggctctcga cagcctctat ccgtccgaca cgttcaatct
      541 gatcacgttc gctggcgata cggagatttt gtttccggaa ccagttccag caaccaaaga
      601 gaacttaaga aaagctcaag catttctaaa tggtcgttcg ggaggcggtg gcactgaaat
      661 gatgaccgcc atcaaggctg ccctcgaacc atccgacgat cagaaacaca tccgaatcgt
      721 ttgctttatg accgatggtt acgtcggcaa cgacatggag atcgtctcgg aggttcagaa
      781 acatcagaac gctcgagtgt tcgcattcgg cattggcgaa tctgtgaaca ggtttctgct
      841 cgataagatg gccgaggccg ggcgtggtga agtcgagtat gttgctctaa atgacgatgg
      901 ctcagctgcc gccagaagat ttcacgagcg agtccgcaac ccgttgttga ctgatatttc
      961 aatcgaatgg aatgggctac cggtggcaga tgtttatcca aagaacatcc ctgacttgtt
     1021 ttcagcaaag cccctgattc tatcgggaag atttaatgcg cctggtaatg gaacgattaa
     1081 gttgagagga aagatggctg ggaacgactt tgtgcgagag atcccggttt ctttcccgga
     1141 gactatggcg tctcacgatg tgctttcttc attgtgggcg cgtcgacgca ttgacgattt
     1201 gatggcccag gattacagcg gtgctcaaag cggtgaaatg caaccggagt tgaaacagac
     1261 gatcacgcag gttggactcg agtatcgact gatgactcag ttcacttcgt t
//
LOCUS       DATCGC010002117         1493 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_427418, whole genome shotgun sequence.
ACCESSION   DATCGC010002117 DATCGC010000000
VERSION     DATCGC010002117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1493)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1493)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1493
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_427418"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1420)
                     /gene="hemG"
                     /locus_tag="VIJ87_20090"
     CDS             complement(<1..1420)
                     /gene="hemG"
                     /locus_tag="VIJ87_20090"
                     /EC_number="1.3.3.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR00562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004729 - oxygen-dependent
                     protoporphyrinogen oxidase activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase"
                     /protein_id="HEY5446712.1"
                     /translation="MKRIAIIGGGISGLAAAHRLIELSKTTQQPIKITILESSSRLGG
                     TIQTEDREGFLLERGPDSFISEKPEAVALAQRLKIDSQLIETNNQHRRSFIIRNGKLR
                     PVPEGFQLLAPSRFWPFISTDIFSMLGKLRMSADLLLPRKSVNGVNDESLASFVRRRL
                     GQQALERMAQPMVGGIYTADPEVLSLRATLPRFLDMERDHRSLILGMWRKGRANKNQT
                     GVSGARYSLFLSFDRGMKVLVDALEKNMANLVESGLAETEVRLNTSVSGVERGANGWI
                     LRTSSGIVSEFDAVCIATPSYGAAKLLSETAPQLAAKLGQIRFASTATINLAYRRSDI
                     SHKLDGFGFVVPFVEKRSVIACTFSSIKFQGRAPEDHILLRAFVGGALQPELLSLADG
                     EITRRVEEDLQQLLGITGKPLFGEVSRWMNSMPQYEVGHLDRVAEIENALEQFSGLVL
                     ARNTYRGAGIPDCIRSGEAAAQS"
BASE COUNT          343 a          410 c          383 g          357 t
ORIGIN      
        1 aactctgagc tgcggcttcg ccacttcgaa tgcaatccgg aattcccgcg cctcgatatg
       61 tgtttcgagc cagtaccaat ccggaaaatt gctctagtgc attttcgatc tcagcaactc
      121 gatcgaggtg gcccacttca tattgcggca tcgagttcat ccatcttgat acttccccga
      181 acaatggctt cccggtgatt cccaacaact gttgcaagtc ctcttcgacg cgtcgcgtaa
      241 tctcgccatc agccaacgaa agcagctccg gttgtagcgc cccacccacg aatgcacgaa
      301 gcaagatgtg atcttctggg gcgcgacctt gaaacttgat gctgctaaac gtgcaggcaa
      361 tgacagaacg tttttcaaca aacggaacaa caaacccaaa gccatccagt ttgtgactga
      421 tgtcagaacg ccggtaagca agattgatcg ttgcggtgga agcgaacctg atctgtccca
      481 acttcgcggc gagttgaggt gcagtctcgc ttaacaactt cgccgcccca taactcggtg
      541 tggcgatgca aacggcatcg aactcactca cgattccaga gcttgtccgt agaatccaac
      601 cgttggcccc acgctcaacc ccacttaccg aagtgttcaa gcgaacctca gtctcagcta
      661 agcccgactc gacaagatta gccatgttct tctccagcgc gtcgaccagc accttcatgc
      721 cacggtcaaa cgaaaggaac aaactgtagc gtgcgccgct gactccagtt tgattcttgt
      781 ttgcgcggcc cttgcgccac attccgagta tcaaacttct gtggtccctt tccatgtcga
      841 gaaatcgcgg caaagtcgca cgcaggctta acacttctgg atccgcggtg tagattccgc
      901 caaccattgg ctgtgccatc cgctcaagcg cctgctggcc caaacgacgt ctgacaaaac
      961 ttgcgagtga ctcgtcgttg acgccgttga cacttttcct cggtagcagc agatctgcag
     1021 acatgcgaag tttgccgagc atgctgaaga tgtcagttga aatgaatggc cagaagcgcg
     1081 atggagcgag aagctgaaag ccttcgggga cgggacgaag ctttccgttt ctgatgatga
     1141 agctacggcg gtgttgattg tttgtctcga ttagctggga atcgattttg agtcgctggg
     1201 caagcgcaac ggcctcaggt ttttcggaaa taaatgagtc ggggccgcgt tcgaggagga
     1261 agccttcgcg atcttcggtc tgaatggtcc cgcctaatcg cgaacttgat tcaagaatgg
     1321 tgatcttgat cggttgctga gttgttttgc tgagttcgat gaggcggtga gcagccgcga
     1381 gtcctgagat accaccacca atgatcgcga tccgtttcat gttagaaagt tacaatctct
     1441 aagcgttctc tgtgattgac gcggctgtgc cgcttcctgt gcggaaagcc gtt
//
LOCUS       DATCGC010002118         2044 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_161326, whole genome shotgun sequence.
ACCESSION   DATCGC010002118 DATCGC010000000
VERSION     DATCGC010002118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2044
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161326"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..289
                     /locus_tag="VIJ87_20095"
     CDS             <1..289
                     /locus_tag="VIJ87_20095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446713.1"
                     /translation="HWLHPILAGVVFLSLGVILGRSIRPPAPPLIIQRNVTAATPTNG
                     ATQLPVIITDDVYLCGARTKKGTPCSRRVHGKVRCWQHTGMPSMIPVVPIK"
     gene            398..1198
                     /locus_tag="VIJ87_20100"
     CDS             398..1198
                     /locus_tag="VIJ87_20100"
                     /inference="COORDINATES: protein motif:HMM:NF022450.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid II flippase Amj family protein"
                     /protein_id="HEY5446714.1"
                     /translation="MNTQVKVVFVLTFVIHLISTLSFALRIAGVRTRRIAVSFAVFNI
                     LVLVSRTANTFQGPLLAKHVERNIIDGVFAHIESDFRWLLFSASLGTAVGLVLIPTFQ
                     RLFASAIDSMDSYRSLPRLFLRVFSIAGWREIREAASFPAKENITHLSWHQAPRGILV
                     FQAVATSLLTVGVFASLYAGYLKPELRVTANNLSPVVNALSTIFLFLFIDPYLSFLTD
                     DVVDGKATEARFRRSVVLLATSRLVGTLLAQALLIPAARLIAIVAEIL"
     gene            1202..2038
                     /locus_tag="VIJ87_20105"
     CDS             1202..2038
                     /locus_tag="VIJ87_20105"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEY5446715.1"
                     /translation="MITPKLSVVMPVHNARPFLAQSIQSILSQTFEDFEFVILDDGST
                     DGSSEIASEWAQKDSRIKLHIGKDRLGLSGSSNFAVSKCTAQVIARMDADDISQKDRL
                     RQQWEVVQKDPTVVAVGTLFVGIDAEGRQVRPRDRWRIVRRSRHIPFPHGSSMFRRNS
                     FDEVGGYCEQMKRGEDQDLFFRLTKKGRVVTLPDVLYQYRYHMENSTVHENSLALTQD
                     LNGQTAEALYMLGAMRLWAGHKSMIPGDTLTKQSLKFNPQTLLTLASVSWGRMHPGSL
                     RS"
BASE COUNT          451 a          514 c          523 g          556 t
ORIGIN      
        1 acattggttg cacccgattc ttgctggcgt cgttttcctt tcgcttggag tcatcctcgg
       61 aagatccata cgaccgcccg ctccgccgtt aataatccaa cgcaacgtca cggctgccac
      121 tccgacaaat ggagcaacac aattgccagt catcattact gatgatgttt atctgtgcgg
      181 agctagaaca aagaaaggca cgccttgctc acgacgtgtt cacgggaagg tccgttgctg
      241 gcagcatacg ggaatgccca gcatgattcc cgttgttcca atcaagtgaa tctgcgcttt
      301 ctttcgtcac gaatcaaatt gatttgcggt cgtgccgcat gaatcgcgtg ttagaatcct
      361 actggtccaa gctcattggt ttctaaactg ccccacaatg aatactcagg tcaaagtagt
      421 cttcgtgctt acatttgtga tccatttgat aagcacgctc tcctttgctc ttcgtattgc
      481 cggagtccgt accaggcgaa tcgccgtatc gtttgccgtc ttcaacatac tcgtcctcgt
      541 ttcacgtact gcaaacacat ttcaaggccc attgctcgcc aaacacgtgg agcgaaacat
      601 tatcgatggg gtcttcgctc atatcgaaag cgacttccgc tggctattgt tctcggcaag
      661 cctgggaact gccgttggcc tggtcttgat cccaactttt caaagattgt ttgccagcgc
      721 aatcgactcg atggattcgt atcgatcatt gccgcgtctt tttcttcgtg tgttctcgat
      781 cgcgggttgg cgtgagattc gcgaagctgc cagtttcccg gctaaggaaa acatcacgca
      841 tttgagctgg catcaggcac ctcgtggaat cctggttttt caggcagtgg caacttcttt
      901 gctgactgta ggcgtctttg cttcgcttta tgcgggatat ctaaaacctg aactgcgagt
      961 gactgccaat aacttgtcgc ccgtggtcaa cgcgttgtcg acaattttct tgttcttgtt
     1021 tattgatccc tatctttcgt ttcttacgga cgacgtcgtc gatggcaaag caaccgaggc
     1081 aaggtttcga cgctccgtag ttttgttggc gacgagtcgg cttgttggaa cgttgctggc
     1141 acaggcgtta ctgattcccg ccgcgagact catcgcgatt gtcgcggaga ttctttagta
     1201 aatgattact cccaagctca gcgtcgtgat gccggtccac aatgcgcgac ctttcctcgc
     1261 tcagagtatc caaagcattc tgagtcaaac gttcgaagat tttgagttcg tgattctcga
     1321 tgatgggtcc accgatggat cgtctgagat cgcgagtgag tgggcgcaaa aggattcacg
     1381 aatcaagttg cacattggaa aagatcgcct gggtctgtcg ggaagttcga actttgccgt
     1441 atccaaatgc acagcgcagg tcatcgcgag aatggatgct gacgatattt cacaaaagga
     1501 ccgtttgcga cagcagtggg aagttgtgca aaaggacccg actgttgttg cggtcggtac
     1561 gttgtttgtt ggtatcgatg ctgaaggaag gcaagtccga ccacgtgacc gttggcgcat
     1621 tgtccggcgt tcacggcata ttccttttcc gcatggctcg tcaatgtttc gtcgtaacag
     1681 cttcgacgaa gttggtggtt actgcgaaca aatgaagcgc ggcgaggatc aggatctgtt
     1741 tttcagactc acgaagaagg gtcgcgtagt tacgctcccg gatgttcttt atcaatatcg
     1801 ttatcacatg gaaaattcca ctgtgcatga gaactcgctg gcattgacgc aagatctaaa
     1861 cgggcagact gcggaagcgc tctacatgct cggagcgatg cgtctgtggg caggtcacaa
     1921 atctatgatc cctggcgaca cgctcacgaa gcagtcactc aaattcaatc ctcagacttt
     1981 gctgaccctg gcttcggtta gctggggcag aatgcatcca ggcagtttga gatcatagat
     2041 cgga
//
LOCUS       DATCGC010002119         1280 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_495368, whole genome shotgun sequence.
ACCESSION   DATCGC010002119 DATCGC010000000
VERSION     DATCGC010002119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1280)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1280)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1280
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_495368"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..386
                     /locus_tag="VIJ87_20110"
     CDS             <1..386
                     /locus_tag="VIJ87_20110"
                     /inference="COORDINATES: protein motif:HMM:NF015129.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446716.1"
                     /translation="GSSYKFRQPGFVLELDLSALFDGPEKLVQYKPLARYPSVVRDVS
                     LLLNRSVQLDEILNAIGEQQVSDCRGANFVGVYEGANLPPDKRSLTVRIEYRSDERTL
                     RDEEVEERHTQLTASLLKKFSAEQR"
     gene            477..770
                     /locus_tag="VIJ87_20115"
     CDS             477..770
                     /locus_tag="VIJ87_20115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446717.1"
                     /translation="MERYAMVGLSGLEKFSHLEDKIYRTIELTKTLRQEKENLEKELA
                     IIHRDMGNVLNEKERLENQVEKLLAERETIRMKVEAMLDAVAALDPEMAEELR"
     gene            767..1156
                     /locus_tag="VIJ87_20120"
     CDS             767..1156
                     /locus_tag="VIJ87_20120"
                     /inference="COORDINATES: protein motif:HMM:NF017016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000917 - division septum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HEY5446718.1"
                     /translation="MSSGIGQMLNKGSMEATTSSPTIRVEIYNQTYNIRSDGDTEYII
                     QLAEFVDSRMREISSGTLTVDSLKVAILAALHIADELHRLKNMHEQADSQLAARSSEC
                     AEMLDKLLKVRNSVETGQGGANKLSLG"
BASE COUNT          366 a          308 c          329 g          277 t
ORIGIN      
        1 ttggttcgtc ctacaagttt cgtcaaccgg gatttgtatt ggagttggat ctatcggcgc
       61 tctttgatgg tccagaaaag cttgtgcaat acaaaccgtt agcgcgctac ccttcggtgg
      121 tgcgcgatgt ctcgttgctt ctgaacagga gcgtacagct tgacgagata ctgaatgcca
      181 tcggggagca acaggttagc gactgtcgag gcgccaattt cgtaggcgtc tacgagggcg
      241 cgaacctgcc gccagataag cgctcattaa cggtccgcat cgaatacagg tctgatgaac
      301 gcacgcttcg agacgaagaa gttgaggaac gccacactca attgacagcg tcgctgctga
      361 aaaagttttc ggcggagcaa cgttaaggaa ataaatcgcc cgcgattgca caatgagtct
      421 tgcgcagata agcgtgaagt cggataatca atccgcgatt acaacttaga agagtagtgg
      481 agagatacgc gatggtaggt ttgtcaggct tggagaagtt ttcacatctt gaagacaaga
      541 tttatcgaac catcgaactc accaagacgc tgcgacagga aaaagagaac ctagaaaaag
      601 aactcgccat tattcatcgc gacatgggca atgtattaaa cgagaaggaa cgtctcgaaa
      661 accaggtaga gaaactcctg gcagaacgcg agacgatccg gatgaaagtc gaggcgatgc
      721 tcgacgccgt tgctgcgctt gatccagaaa tggcggagga actcagatga gctccggcat
      781 cggccaaatg ctaaacaaag gcagtatgga agccactacc agcagcccca caattcgagt
      841 tgaaatctac aaccagacct acaacattag gtccgatggc gacaccgaat acatcattca
      901 actcgccgaa tttgtcgata gccggatgcg tgaaatctcc tccggcacac tcaccgtcga
      961 ttcgctaaaa gttgcaattc ttgcggcact tcacattgct gatgagttac accgtctcaa
     1021 gaacatgcac gaacaggccg actcccaact cgctgcccgc agttcagaat gcgctgaaat
     1081 gctcgataaa ctgttgaagg ttcggaacag tgtcgagacg ggacaaggcg gagcgaataa
     1141 gctatccctc ggctagtcca gcaaaagcaa tctcaaatct gaggtcttac gatctattag
     1201 tcacaccggc tgagattaga gtcccgtcgt tctacgtcga cgagttatag taaattctga
     1261 gatctgaaat ctgagatttg
//
LOCUS       DATCGC010002120         1921 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_64918, whole genome shotgun sequence.
ACCESSION   DATCGC010002120 DATCGC010000000
VERSION     DATCGC010002120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1921)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1921)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1921
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64918"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..898
                     /locus_tag="VIJ87_20125"
     CDS             <1..898
                     /locus_tag="VIJ87_20125"
                     /inference="COORDINATES: protein motif:HMM:NF013292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase"
                     /protein_id="HEY5446719.1"
                     /translation="LDSLIAGVNIVELDPLDDSVGYGGLPNAEGVVQLDSSCMHGPKK
                     RAGAVGALEGVRTPSLVAKAVMENTDHHLIVGKGAQDFARGMGFKIEDDLNTDNSRRQ
                     WLEWKRRIDPSHYLDPKKRAEAGHKAALEMYAEGLLREENLHGTINCDGINSKGEICG
                     VTTTSGLAWKIPGRLGDSPILGAGLYVDGAVGAAGSTGRGEANLYNLCSFVIIEEMRR
                     GAHPKDAGMEVLNRIKNNTIEKRLLNDRGLPNFGINFYILNAKGEYAGVTMYEGSSFA
                     ICNENGPQTLKAEGLLQGKPSD"
     gene            918..1844
                     /locus_tag="VIJ87_20130"
     CDS             918..1844
                     /locus_tag="VIJ87_20130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446720.1"
                     /translation="MLRRNLAFVSVVICLLLAGCKGARELGKTIGALVEVRAQIMKKY
                     NESGVDVRVNGSGRFSGISVNFMNSPLNDKAPGDRVRRAQETAEIVKAHYPDVKTMDQ
                     IVVSFSREKTALVVFHSWVVLDYYRFDNQARRLSDAGETYTSGNEDPTKPNTLYSPRR
                     NETDVSSNGIQLEGTPENGLTMVPHFSLVGNVNRVTPNPPTTVSLDFASFSAKQRFPG
                     VTKIVFTTNKKVSFQTDGQFSTSHLSDGMVSEILYLKIPRSDFIEITEGSDLVVELGD
                     SGFRLAPQQVLQLQRMADYLRLPDSSRTDAHR"
BASE COUNT          507 a          462 c          524 g          428 t
ORIGIN      
        1 gctcgattcc ttgattgccg gcgtcaatat cgtggaactt gatccactcg acgatagcgt
       61 gggctacggc ggactcccga atgcagaagg tgtcgttcaa ctcgattcat cgtgcatgca
      121 cggtcccaag aaacgcgcgg gagcggtggg ggcgcttgaa ggcgtgcgca ctccgtcgtt
      181 ggtcgccaaa gcagtcatgg agaataccga tcaccatctg atcgttggta aaggtgctca
      241 ggactttgcc cgtggcatgg gcttcaaaat tgaagacgat ctcaacaccg acaattcgag
      301 gcgtcagtgg ttggagtgga aacgacgtat cgatccttct cattatctcg atccgaagaa
      361 acgcgctgag gcgggtcaca aagccgcgct ggaaatgtat gcggaggggc tgttgcgcga
      421 ggaaaatctg cacggaacca tcaactgtga tggcatcaat tcgaagggcg aaatctgcgg
      481 cgttacaact acgagcggac tagcatggaa aatcccggga cgcctgggcg actcaccaat
      541 tcttggagcc gggttgtacg tcgatggcgc tgttggcgcg gcaggttcga cgggacgtgg
      601 agaagcaaac ctctacaatc tttgttcgtt tgtgattatt gaagaaatgc gacgaggtgc
      661 gcatccaaaa gacgcgggca tggaagtact aaaccgcatt aaaaacaata ccatcgaaaa
      721 acgtctgctg aacgatcgtg gcttgccaaa ctttggaatc aacttttaca tactcaatgc
      781 aaagggagaa tatgctggcg tcacgatgta cgaaggatcg tcctttgcaa tttgcaacga
      841 gaacggacca cagacgctaa aagccgaggg cttgctccag ggtaagccca gcgactaacg
      901 acgatatcct catgttcatg ttgagaagaa acttagcctt tgtttccgta gtgatctgcc
      961 tgctgcttgc tgggtgcaaa ggcgccaggg aattgggcaa aacaattggt gcgctggttg
     1021 aagtgcgcgc gcagataatg aagaaataca acgaaagcgg cgtcgacgta agggttaacg
     1081 gcagtggacg cttcagcgga atttccgtca atttcatgaa ctcgccctta aacgacaaag
     1141 ctcccggtga tcgagtcagg cgtgcccagg aaactgctga gattgtgaaa gcccactatc
     1201 cagacgtcaa gactatggat cagatcgttg tttcgttttc gcgagagaaa actgctcttg
     1261 tagtttttca ttcatgggta gtcttggatt actacagatt cgacaatcag gcacgcaggt
     1321 tgtcagacgc aggggaaacc tacacgtctg gcaacgagga tcccaccaag ccaaacacgc
     1381 tttactcgcc aaggcgaaat gaaaccgacg tttcaagcaa cgggattcaa ctggaaggga
     1441 cacccgaaaa cggtttgacg atggtcccgc atttctcgct tgtggggaac gtcaatagag
     1501 tcacccctaa tccaccgaca acagtaagtc tcgatttcgc gtcgttctct gctaaacaga
     1561 gattccctgg agtcactaag attgtcttca caacgaataa gaaggtttca ttccaaaccg
     1621 acggtcagtt ttcaacatct catctcagtg acggaatggt gagcgagatt ctctatttga
     1681 agattccgag gtctgacttt atcgagatca cggaaggtag tgacctggtt gttgaactgg
     1741 gcgatagtgg attcaggctg gcgccgcaac aggtgcttca actgcaaaga atggctgatt
     1801 atctgaggct gcctgactcg agccggactg acgcacatcg ctgatatgag gtcagtacca
     1861 ccacgcggta gcgtgtggct caacccaaaa catcagcagt cattcgaaat ctagccacac
     1921 g
//
LOCUS       DATCGC010002121         1046 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_394706, whole genome shotgun sequence.
ACCESSION   DATCGC010002121 DATCGC010000000
VERSION     DATCGC010002121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1046
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_394706"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(302..386)
                     /locus_tag="VIJ87_20135"
     tRNA            complement(302..386)
                     /locus_tag="VIJ87_20135"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(352..354),aa:Ser,seq:tga)
     gene            599..>1046
                     /locus_tag="VIJ87_20140"
     CDS             599..>1046
                     /locus_tag="VIJ87_20140"
                     /inference="COORDINATES: protein motif:HMM:NF012993.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HEY5446721.1"
                     /translation="MLVTIGQINTINGDWQANTASIIRAIEQGKKDKSDLVVLPETAV
                     QGYTSLDWFLDRDVERCALQPLPEIIAATEGITAVVGTVRPSGLTTGRRLFNSAAVIR
                     NRELLGFSDKTLLPEYDVFDDPRYFQPAQERHLFNLGDKKLGVAVCE"
BASE COUNT          283 a          281 c          255 g          227 t
ORIGIN      
        1 gctctgagga ctaagtacct cgcgccaggc ctcaaagaaa cagagattcg agagcgagag
       61 cgcaatgatc gaatgcttac gcatatccgt tgctttggga tggagttgga ataagactta
      121 gttcagacga gggtattaag aagatggcct aattctattt cacgttgccc gcacgaatga
      181 tttgtaacac cccgcggtca tcgtttacac agacactgac aactctgaaa tgtctaactg
      241 gtttcggtga gtgggcgtga taactttgtt ggaagagaca acacgtctga cgagggaggt
      301 atggcggagg ggacaggact cgaacctgca taacctttcg gtcggcggtt ttcaagaccg
      361 ctgcactacc attatgcgac ccctccgcac cgtggcggca atgaatatag cgcaaccaaa
      421 ccacctcgcc aaatgaacac ctggccacaa atctgctcgg ataaacacag atcaagccga
      481 acgataattt gcgaactctg gtcgtccatc tattcggttt gcgatccgcg actgaaaaag
      541 gcacgatcct tcaaacgaag aaactccaaa gaccaaagca caaagacccg cactgaacat
      601 gctcgtcacc ataggccaaa tcaacaccat caacggcgac tggcaggcaa acactgccag
      661 catcattcgc gcgatcgaac agggtaagaa agataaatcg gacttagttg ttcttccaga
      721 aactgccgtc cagggttaca catcgctcga ttggtttcta gatcgcgacg tcgaacggtg
      781 tgcacttcaa ccgttgccgg agatcatcgc cgccactgaa gggattacgg ctgtcgttgg
      841 cacggtcagg ccatccgggt taactaccgg acgacgtctg ttcaactcag ccgccgtcat
      901 tcgtaatcgc gaactactag gcttctccga caagacgctt ttacccgagt acgacgtctt
      961 cgacgatcct cgttactttc aaccggctca agaacgccat ctattcaatc tcggcgataa
     1021 gaaacttggc gtcgctgttt gcgaag
//
LOCUS       DATCGC010002122         1476 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_97667, whole genome shotgun sequence.
ACCESSION   DATCGC010002122 DATCGC010000000
VERSION     DATCGC010002122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1476)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1476)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1476
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97667"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..283
                     /locus_tag="VIJ87_20145"
     CDS             <1..283
                     /locus_tag="VIJ87_20145"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY5446722.1"
                     /translation="RVAQEAINNATRHGKASQIDVSLQATDHLMTLQVLDDGVGISES
                     KSNGMGLAIMRARARLNGGELQIEQPESGGTKICCSVRIDQQGTELADA"
     gene            270..935
                     /locus_tag="VIJ87_20150"
     CDS             270..935
                     /locus_tag="VIJ87_20150"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY5446723.1"
                     /translation="MQTPDQISVVLVEDHRMFREQLAHLINKADDMVVIGEADNIRDG
                     FALIQQTQPSIAILDLTLKGSSGLELLKDLRAHGMDVPVLVLSMHDESSYAQRALRAG
                     AKGYMTKHEASENVMVAIREVLKGEVYLNPRFMSKLVSKMMTQRDTSAAPIDLLADRE
                     LEVFELIGRGLTTREIGIQLGLGLSTVDTYRTRIKEKLNLENAARLRSEASRWVQQRE
                     VSQ"
BASE COUNT          338 a          418 c          385 g          335 t
ORIGIN      
        1 ccgcgtggcg caggaagcga tcaacaacgc aaccaggcat ggaaaagcaa gccagataga
       61 tgtttctctc caggccacgg atcatcttat gaccttgcaa gtattggacg acggggtcgg
      121 tatctctgag tcgaagtcaa atggtatggg tctcgcgatc atgcgtgccc gggcccgact
      181 caacggtggc gaactgcaaa ttgaacagcc ggaaagtggg ggcacaaaga tatgttgctc
      241 cgtccgaatc gatcaacaag ggactgaact tgcagacgcc tgaccaaatc agcgtagtcc
      301 tggtcgagga tcatcgaatg ttccgcgaac aactcgcgca tttgatcaac aaggcggacg
      361 acatggtggt tatcggcgaa gcggacaaca ttcgcgatgg cttcgccctg attcagcaaa
      421 cccagccgag catcgcaatt ctcgatctta ccttgaaagg ttcgagcggc ttggagctgc
      481 tcaaggattt gcgcgcccat ggcatggacg tcccggtcct cgtcctgtcc atgcacgacg
      541 aatccagcta cgcgcaacgc gcgcttcgtg ccggcgccaa aggttacatg accaagcacg
      601 aagcctcaga gaacgtgatg gtcgcaatcc gtgaagtcct taagggcgag gtctacttga
      661 accctcgttt catgtccaaa ctcgtgagca aaatgatgac tcagcgggat acctcagcgg
      721 cgccgattga cttgctcgct gatcgcgagc tcgaggtctt cgagttgatt ggacgcggcc
      781 taacgacacg cgagattggg atccagctcg gcctcggact ttccaccgtt gatacttacc
      841 ggacgcggat caaagagaaa ttgaatctcg agaacgcggc gcggcttcgc tctgaagcta
      901 gtcgctgggt tcaacaacgc gaagttagcc aatagtagtc gaccctctgt ccttggagga
      961 atgcatgtaa agcatcctcg atagtctttc cgcgtccgta tccggaccgg gatgtctatt
     1021 ttctgtttcg aggagggccg cctcagcccc ttgtcgggtt tttcgctaca cgttttgtct
     1081 gacactcagt ttccgcttcg gcttgaccta tcttccgcgg tctgctgaga tacgcccgcc
     1141 aaaagcccca tcgaatctgt cgaactctgc ccaaccgagt tcttcgcccg atagccgtga
     1201 ttggccgcgg catgatctga tccaccgttc acaaaaatgc aattatgacg cgcaccgaaa
     1261 atctttctgc ccctgcccta aaaacatctc ccaggcgatc tgcctttggt tcacccgcaa
     1321 tgaaaatgaa aacgagactc atccttctaa ctaccgcagt ctttatcgct ctgttgtcgg
     1381 cagggcaggc agcaacccaa gtattttcct tcacgggtag tgaccaggtg tgggttgttc
     1441 ctaatggagt tacttccgca accttcactt gctacg
//
LOCUS       DATCGC010002123         1456 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_64958, whole genome shotgun sequence.
ACCESSION   DATCGC010002123 DATCGC010000000
VERSION     DATCGC010002123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1456)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1456)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1456
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64958"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            32..>1456
                     /locus_tag="VIJ87_20155"
     CDS             32..>1456
                     /locus_tag="VIJ87_20155"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEY5446724.1"
                     /translation="MNLRNYSLSVTALLLFINAACAQSALPQLPDTPAANQAKGWLEV
                     FNAGDVEKRRAFLQKNYPSRLERFDRETEMRRGTGGFDVMKVAESTPTKIVLLIQERL
                     GEQFAQFTVEVEPAPPHAIKQFQFQVLPRPAEFAIRHLNDNELVASSRKRLDELVAGD
                     LFSGAVLVAKDGKTVFAQAYGLADREKKTPNTLKTRFRLGSMNKMFTAVATLQLVQNG
                     KLDLKAPFGNYLTDYPNKDVASKVTIEQMLTHTGGTGDIFGPEFEKNRLQLKTLQDYV
                     KLYGNRGPEFEPGSRWQYSNYGFLLLGVIVEKVSGQNYYDYVRDHIFKPAGMIATASE
                     PEDQVVADRSVGYMRTDGAGWQRNTDTLPYRGTSAGGGYSTVEDLLKFATALQANQLL
                     KPQYTEMLTTGKVETPNGGKYAYGFQEATVNGTRCFGHGGGAPGMNGELKICPGPGYV
                     VAVLANLDPAAATRIADFITNRLPI"
BASE COUNT          361 a          378 c          406 g          311 t
ORIGIN      
        1 tcaacgactt ccagcgacga ggacgcagac catgaatctc agaaactatt cactgtcagt
       61 taccgcactt ttacttttca tcaacgctgc ttgcgcccaa tcagcgttgc cacagttgcc
      121 agacacgccc gcggcaaacc aggcgaaggg gtggttggaa gttttcaacg cgggagatgt
      181 cgagaagcgc agggccttcc tccaaaagaa ttatccgagt cgtttggaac gctttgatcg
      241 cgaaacagaa atgcgacgcg ggactggtgg tttcgacgtc atgaaagtcg cggagtcgac
      301 accaaccaaa atcgtcttgc tgatccagga acgcctgggc gagcagttcg cgcaatttac
      361 cgttgaggtc gagcccgcgc cgccacacgc tattaagcaa tttcaatttc aagtgctccc
      421 ccgaccggcg gagtttgcta ttcgtcactt gaacgacaat gagttggtcg cctcatcgcg
      481 aaagcgcctg gatgaattag tagccggcga tcttttttca ggtgctgtcc tcgtcgcaaa
      541 agatggcaag actgttttcg cacaagcgta cggactggca gatcgtgaaa agaaaacgcc
      601 gaacaccttg aagacgcgct tccgactcgg atcgatgaac aagatgttca ccgcagtcgc
      661 cacacttcaa ctggtacaaa acggaaaact cgatctgaaa gcacccttcg gcaattacct
      721 caccgactat cccaataaag acgttgcgtc gaaagtaacg attgaacaga tgctgacgca
      781 cactggaggc acgggcgaca tctttggtcc ggagttcgag aagaatcgac ttcagctaaa
      841 gacgctacag gactatgtga agctgtacgg caatcgcggg ccggagtttg aaccgggcag
      901 tcgctggcag tacagcaact atggttttct tttgttgggt gtgatagttg agaaagttag
      961 cggtcagaac tactacgact atgttcgaga tcacattttc aagccggcag gaatgatcgc
     1021 tactgcttcg gagccggaag accaggtggt tgccgatcgc agcgttggtt acatgcgaac
     1081 agatggcgcc ggttggcagc gcaacactga cacacttccc tatcgcggga cttctgcggg
     1141 tggcggttat tcgacggttg aggatctatt gaagtttgcg acggcactcc aggcaaacca
     1201 gctattgaag ccgcagtaca ccgagatgct cacgacgggg aaagtcgaga caccgaacgg
     1261 cggtaagtat gcttatggat ttcaagaggc gacggttaat gggacccgat gcttcggcca
     1321 tggcggtggc gcgcccggga tgaatggcga gttgaagatc tgccccgggc caggttacgt
     1381 cgtcgcagtc ttggccaacc tggatcccgc ggcggcgact cgaattgcag acttcattac
     1441 caatcgactg ccaatc
//
LOCUS       DATCGC010002124         1109 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_262083, whole genome shotgun sequence.
ACCESSION   DATCGC010002124 DATCGC010000000
VERSION     DATCGC010002124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1109
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_262083"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..603
                     /locus_tag="VIJ87_20160"
     CDS             <1..603
                     /locus_tag="VIJ87_20160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446725.1"
                     /translation="SVFQASQMTHAERSVVVSTFEEKDIANVTARTIQNDNECRAVTY
                     FIRRVVELYAISTRVSDISYRIVGPNLPPDWHTINDIGWLPVQIQNEIKAVLNLLPKV
                     GEVVERPKPISIPTDGTVYDPELAHCCSCEPERAAAISIRLEKQKAEALKACIEAQTL
                     QLELERRKLLLQKGELAPFSAPATTNAPAPMPQIAAEPQR"
     gene            complement(657..>1109)
                     /locus_tag="VIJ87_20165"
     CDS             complement(657..>1109)
                     /locus_tag="VIJ87_20165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446726.1"
                     /translation="CPPGTVDGGDICEVEDHFFIGVSARTNESGAQQLAGILDTLGYT
                     SQLVDIRGVQGILHLKSGIAYLGENRLVVIEELADFDEFRGYELVRVKRGEEYAANCI
                     VVNDSVLIAAGFPEFARQLQRLGLRTISIEMSEFQKMDGGLSCLSLRF"
BASE COUNT          291 a          310 c          258 g          250 t
ORIGIN      
        1 tccgtgtttc aagcttcgca aatgactcac gctgagcgtt cggtagtcgt aagtacgttc
       61 gaggagaagg atattgcgaa cgtaacggcg cgaactattc agaacgacaa cgaatgtcgt
      121 gctgttactt acttcatccg cagggttgtg gaactctatg caatcagcac gcgagtttca
      181 gacatctcgt atcgaatcgt cggcccaaat ctgccacccg actggcacac aatcaacgat
      241 atcggttggc tgccggttca aattcaaaat gaaatcaagg ccgtattgaa tctgttgccg
      301 aaggttggag aagtcgtcga acgaccgaaa ccaatttcga taccaacaga cggcacggtc
      361 tacgatcctg aacttgcaca ctgctgttcc tgcgaaccag aacgcgccgc ggcgatcagc
      421 atcaggttgg agaaacagaa agcggaggcg ctgaaggcct gcatcgaggc tcagacactc
      481 cagcttgaac ttgagagaag aaagctgctg ttgcaaaagg gagaacttgc tccgtttagt
      541 gcgccagcaa caactaatgc tcctgcacct atgccgcaga ttgctgctga gccacaacgc
      601 taagcacttc tggagtgcgc tgactagtca taagcttatt ggcgcactcc acattttcaa
      661 aaccttaaag acaagcagct caacccgccg tccatcttct gaaactccga catctcgatt
      721 gatatcgttc gcagtccgag tctctgaagt tgtcgcgcaa actcgggaaa gcccgccgca
      781 attagtacgg aatcgtttac aactatgcag ttggccgcat actcctcgcc tcttttcacc
      841 ctgaccaact catatcctcg aaactcatca aagtctgcta actcctcgat cacgacgaga
      901 cgattctctc ccagataagc aatgccactc ttcaagtgca aaattccttg tacgcctcgt
      961 atatcaacaa gctgcgacgt gtagccaaga gtgtcgagga tgccggccaa ctgttgtgcc
     1021 ccagactcat ttgtacgagc ggacactccg atgaagaagt gatcttccac ctcgcagatg
     1081 tcgcctccgt ctacggttcc cggaggaca
//
LOCUS       DATCGC010002125         1097 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_97698, whole genome shotgun sequence.
ACCESSION   DATCGC010002125 DATCGC010000000
VERSION     DATCGC010002125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1097
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97698"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(179..586)
                     /locus_tag="VIJ87_20170"
     CDS             complement(179..586)
                     /locus_tag="VIJ87_20170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446727.1"
                     /translation="MSFVELDESKNISATLENIAIDAVHSNLEGAESAYNNAGDRFFY
                     VTLSDAVAEKMVEEGWNIKRLYTDGQMINLLKIAAGKEFDPLSGQVLSNSSNEDWKYV
                     NDGDAIEIVGVYWCIPKRDNLSGHKAYFKKINR"
     gene            complement(602..1036)
                     /locus_tag="VIJ87_20175"
     CDS             complement(602..1036)
                     /locus_tag="VIJ87_20175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446728.1"
                     /translation="MKIGFTGTRHGMTNDQADTFYELVHDLFYRDRSVREFHHGDCIG
                     ADAEAHEMVFERNAGVFYHLHPCNLPRQRAYMSADFEYEEKPPLKRNHDIVDASEVMI
                     ATPRETKEKFRGSGTWATIRYTRSQEKKLYIIWPDGSIKEEF"
BASE COUNT          208 a          311 c          257 g          321 t
ORIGIN      
        1 gccttctcgc gctccgagtt gcgacgagac tgctcctttg ccaggaagct ctgaccgcgc
       61 tccttgatct cggcctccca cttctctcgc ttggcacgca tcctcttgtt cttctcactg
      121 cgactggaca tcttctagct ctccttctcg atttttgtgg ttggtgtgtt ggatgtttct
      181 aacggttgat cttcttgaag tacgccttgt gtccactgag gttgtccctc ttgggaatgc
      241 accagtagac cccgacgatt tcgatggcgt ctccgtcgtt gacgtacttc cagtcctcgt
      301 tgctggagtt ggacagcact tgtcccgaaa gagggtcgaa ctccttaccg gcagctatct
      361 tcaagagatt gatcatttga ccgtcagtgt agagccgttt gatgttccag ccctcttcga
      421 ccatcttctc agcgaccgca tcagacaagg tcacgtaaaa gaacctatcg cctgcgttgt
      481 tgtatgcaga ttccgctccc tcaagattgg agtgcacagc atcgattgcg atgttctcca
      541 acgtcgcgga gatgttcttg gactcatcca gttcaacaaa actcatcttc ttgctcctct
      601 tctagaattc ttccttgatc gacccgtcgg gccagatgat gtaaagcttt ttctcctggc
      661 tgcgcgtgta gcgaatcgtc gcccacgtgc ccgatccacg aaatttctcc ttcgtttctc
      721 tgggcgtcgc gatcatgact tccgaagcat ccacgatgtc atgatttcgc ttgagaggcg
      781 gcttctcttc gtactcgaaa tcagcactca tgtacgccct ctggcgaggc agattgcagg
      841 ggtggagatg ataaaacaca ccggcatttc gttcaaagac catctcgtgt gcttccgcat
      901 ctgcaccgat gcaatccccg tggtggaact ctcggacact ccgatctctg tagaacagat
      961 cgtggaccag ctcatagaaa gtgtctgctt gatcgtttgt catgccgtga cgagttccag
     1021 tgaatccaat cttcatcttc ttgctcctct tctagcttgt tggtcaggaa tcgagaaagt
     1081 cgtcagcgat tttcttg
//
LOCUS       DATCGC010002126         1071 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_230926, whole genome shotgun sequence.
ACCESSION   DATCGC010002126 DATCGC010000000
VERSION     DATCGC010002126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1071)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1071)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1071
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230926"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1059)
                     /locus_tag="VIJ87_20180"
     CDS             complement(<1..1059)
                     /locus_tag="VIJ87_20180"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEY5446729.1"
                     /translation="MGVPSGTQLGRYEVRSLLGVGGMGEVYLAQDLQLRRLVALKLLP
                     PQFTRDEERLRRFKQEAFAASSLNHPNIFTIFEIGQHGDTHFIATEYIDGQSLRQLTT
                     QGPIQLERVLDWGTQIASALAAAHAAGIIHRDIKPDNIMVRRDGYVKVLDFGLAKLSE
                     YKNLASDPEAATLQVIQTDPGKVMGTASYMSPEQTRGLQLDERTDIWSLGVILYELIA
                     GRPPFEGLSTSDVVASILRTDPVPLQRFSPDVPAELHRIVRKALHKDPDERYHLAKEM
                     AIDLRNLRRDLELNAEIERSVQPVGSAIRKSGTPSRTQMNLSRPVLDTAPVPHQRSTA
                     SAEPFPKDRPKYSNASKLV"
BASE COUNT          242 a          270 c          302 g          257 t
ORIGIN      
        1 aactagtttt gaagcgtttg aatacttcgg tcgatctttc gggaatggtt cagcgcttgc
       61 ggtcgatcgc tgatgcggta caggtgccgt atctaaaacg ggccgtgaga gattcatctg
      121 cgtccggctc ggagtgcctg actttcgaat agctgaaccg acaggttgga ccgagcgctc
      181 gatttcggcg ttgagttcaa ggtcgcgacg aaggttcctc aagtcgatag ccatttcttt
      241 cgccaggtga tagcgctcgt caggatcctt gtgtaaggcc ttccgaacaa tgcggtgcag
      301 ttcagcggga acgtctggcg agaaacgctg caatggaacc gggtcagttc ttagtatgga
      361 agcaaccaca tcgctggtac tgaggccctc gaaaggaggt cgaccggcga ttagttcata
      421 cagaattact cccaagctcc agatgtcggt gcgctcatcg agttgaaggc ctcgggtctg
      481 ctcgggcgac atgtaactcg ctgtgcccat gaccttacct ggatcggttt gaataacctg
      541 taaggttgcc gcttcaggat cgctggcaag attcttgtat tcacttaact tagccagacc
      601 aaaatcaagc accttcacat aaccatcccg acgaaccatg atgttatcgg gcttaatatc
      661 gcggtgaatg attccggcgg catgtgcggc cgcaagagcc gaggcgatct gggttcccca
      721 gtctagaact cgttcaagct gaattggccc ttgagttgtg agctgccgca acgattggcc
      781 gtcgatgtat tcagtggcga tgaagtgggt atcaccgtgt tggccaattt caaaaatcgt
      841 gaagatattc ggatggttca gcgaagacgc ggcaaacgct tcttgcttga accggcgcag
      901 ccgctcttcg tcgcgcgtaa attggggtgg taaaagcttg agtgctacaa ggcggcgcaa
      961 ctggaggtct tgcgcgagat aaacctcacc catcccgccc accccgagta aagaacgcac
     1021 ttcatatcga cctagttgtg taccggaagg aacccccatg tttcggttag g
//
LOCUS       DATCGC010002127         1240 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_427510, whole genome shotgun sequence.
ACCESSION   DATCGC010002127 DATCGC010000000
VERSION     DATCGC010002127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1240)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1240)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1240
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_427510"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            163..>1240
                     /locus_tag="VIJ87_20185"
     CDS             163..>1240
                     /locus_tag="VIJ87_20185"
                     /inference="COORDINATES: protein motif:HMM:TIGR01845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HEY5446730.1"
                     /translation="MKRLVLSLLFVCTFQTYVVCQKYQRPKVQTPTVFRGDTATQPDP
                     QSLADLKWFELFKDEKLQELIKEALANNYDLREAVARIDAARANYGIARSNQFPTIGI
                     GADVVNERLSRSGALTLPEPTKRDRSFGSVLLNLLSFELDIWGRVRKETAATKSDLLA
                     QEEARRAIMVSIIADVATSYFSLRELDYELEISKSTLASRLESLRIISLRQQRGVATL
                     LEVREAENLVYSASETIPAIERGINAAENFLSYLTGRNPGDIARGLSLTDHQLPVTVP
                     AGLPSDLIERRPDIRSVENSLIAANARIDVAKAAYFPRISLTAFLGFESGELTNLFKN
                     SRSVWFLGGELAQPIFTAGRLKSNV"
BASE COUNT          293 a          308 c          326 g          313 t
ORIGIN      
        1 gggcactggc gtgttctttg gcatgctcgt agccaccttt cttggagtgt tcatcattcc
       61 cgggaacttc actttcatgc tgggcctggg gagtagttgg cgcaagaagg cacccactcc
      121 gccaccagtg ccggctacgg ccgatgcggg aggtgaacac taatgaaacg cctagttttg
      181 tctctattgt ttgtttgcac gtttcagact tacgttgttt gccagaaata ccaacgccca
      241 aaggttcaaa ctccaacggt gtttcgcggg gacactgcta ctcagccgga tccgcaatca
      301 ctggcagact tgaaatggtt tgagctgttc aaagatgaga agttgcaaga gctcataaaa
      361 gaagctctcg cgaataacta cgaccttcgc gaggctgtcg cccgcatcga cgctgctcgc
      421 gcgaattacg gcatagctcg ctcaaatcaa tttcctacca tcggaatcgg cgctgacgtg
      481 gtgaatgaaa ggttgtcgcg aagtggcgcg ctgactcttc cggagcccac taaacgcgat
      541 cggtccttcg ggagtgttct cctgaatctt ctgagttttg agctggatat ctggggaagg
      601 gtgcgtaaag aaaccgcggc cacgaagtca gatctattag cgcaagaaga agcgcgcaga
      661 gcaataatgg tgtccattat tgcagatgta gcaacttcct atttcagttt gcgcgagctc
      721 gactatgaac ttgaaatatc aaagagtact ctcgcctccc gactagagtc gctccgaata
      781 atttcactca gacagcaacg tggcgttgcg accttgttgg aagttcgtga ggctgagaat
      841 cttgtttaca gtgcttctga aacaataccg gccattgaac gagggataaa cgctgctgaa
      901 aactttctga gctatctcac cggccgaaac cccggcgata ttgcgcgcgg attgagtctg
      961 actgaccatc agttaccggt gactgttccg gctggcttgc cttcggattt gatcgaacgc
     1021 agacctgata taaggtcggt cgaaaatagt ttgatcgccg cgaacgcccg gatagatgtt
     1081 gctaaggcag catactttcc tcgaatttca cttaccgcct tcctcggctt cgagagtggt
     1141 gagttgacga atctcttcaa gaacagtaga agcgtttggt ttctaggcgg ggagcttgct
     1201 caaccaatct tcacagctgg acgtttgaag tcaaatgttc
//
LOCUS       DATCGC010002128         1600 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_161420, whole genome shotgun sequence.
ACCESSION   DATCGC010002128 DATCGC010000000
VERSION     DATCGC010002128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1600)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1600)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1600
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161420"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(126..359)
                     /locus_tag="VIJ87_20190"
     CDS             complement(126..359)
                     /locus_tag="VIJ87_20190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446731.1"
                     /translation="MRTKRGITIERQILLIEIERRCSFPECNERVFVGLTKKEALEYL
                     GFECLECERWNEDRLKRTDVPDWWDEINQEATH"
     gene            complement(369..1094)
                     /locus_tag="VIJ87_20195"
     CDS             complement(369..1094)
                     /locus_tag="VIJ87_20195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446732.1"
                     /translation="MSEQRTWKRIRERLELKLPVRIVCRETLDFEWMEVTRLIDVTPF
                     GCGFTLKRPTEKGRILHMTIPLPRQLRVFDHAEDQYRIWALVRRVTPGATPDNKTATF
                     DVGVAFIGKRPPASYQMEPWKRYDISNTAFQAMATPEEIKPIPTSDQRIHTRHNIAVD
                     MQLEAIDEKGATSQTESTVTENISRRGATLFTTLHIPIGRFIRLTSAAYGLTVFAAIR
                     ARSTGVDGIPRIHVEFIDKEWPL"
     gene            1430..>1600
                     /locus_tag="VIJ87_20200"
     CDS             1430..>1600
                     /locus_tag="VIJ87_20200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016293116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HEY5446733.1"
                     /translation="METTSEKNHINIEDEMRRSYLDYAMSVIIGRALPDIRDGLKPVH
                     RRVMWAMHELGNT"
BASE COUNT          359 a          411 c          412 g          418 t
ORIGIN      
        1 ccttgaccct accgctacaa cgctcctgat aacttccaac gcccactggg gaaacatcgc
       61 gcgactcttg ttgtctcgag tcgcaccgtt gcgtgattgg gatgtgccat tattgctcaa
      121 gcccgttagt gggtcgcttc ctgattgatt tcgtcccacc agtcagggac atcggttcgt
      181 tttagacggt cttcgttcca tcgctcacat tcgaggcatt cgaatccaag gtattcgaga
      241 gcttctttct tcgtcagccc cacgaacact ctttcattgc actcgggaaa tgaacatctc
      301 cgttcgatct cgattaggag aatctgccgc tcgatcgtta tgccacgttt cgttcgcata
      361 gcgacatttt acaacggcca ttccttatcg atgaactcga catggattcg tggaattcca
      421 tccactcctg tgcttcgtgc cctgattgcc gcaaacacag taagaccgta ggcagcactt
      481 gtcagtcgga taaaccggcc gatcggaatg tggagcgtcg tgaacagggt ggcgcctcgt
      541 cggctgatgt tctctgtcac agttgattcg gtttgactgg tcgcaccttt ctcgtcaatg
      601 gcttcgagct gcatatcaac tgcgatgttg tgccgcgtat gaatgcgctg gtccgaagtg
      661 ggaattggct tgatctcctc gggtgtggcc attgcttgaa acgccgtatt cgaaatgtcg
      721 taccgtttcc acggctccat ttgataactc gccggcggac gctttccgat gaacgcaaca
      781 ccgacatcga aagtcgcagt tttgttatcg ggggtggccc ctggcgtcac gcgacgcaca
      841 agcgcccaaa tccgatattg atcttcggcg tgatcaaaaa cgcgcaactg tcgaggcaac
      901 ggaatcgtca tgtggagaat tcgtcctttt tccgtgggcc gcttcagggt gaatccgcag
      961 ccaaacggag ttacatcgat gagtctggtg acttccatcc attcaaaatc gagtgtttcc
     1021 cgacaaacaa tacggacggg tagtttcagc tctagacgtt cccggattcg cttccaagta
     1081 cgttgttcac tcatcgggcg gaaagggggt cactgacgat aaaaagggtg gctttaactg
     1141 cccgtcgttt gcgctgcgct gagcccgctg aagccattga ttttattaga gtttcgctca
     1201 gtttgtaggt ttgccaaaac tacctaaaaa agctaaaatg cgacgtgttc aaaagctgat
     1261 gcaccacccg ttttttaacc acaaaaaaag agccctcaac gcgagtcgac tttagttcgg
     1321 tgggggtttc agtgtgcctt tgggattaga ttcatatgcc ttggtaggtg aagggctccg
     1381 caaattttaa gtagccaaga ctggcggatt gtactggaaa ggttagtaga tggaaaccac
     1441 ttctgagaag aatcatataa acatcgaaga tgagatgcgg cgttcgtatc tcgactatgc
     1501 gatgtcggtc attatcggcc gggcactgcc cgacattcgg gacggactaa agcctgttca
     1561 ccggcgcgtc atgtgggcaa tgcacgagct cggaaacact
//
LOCUS       DATCGC010002129         2050 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_32815, whole genome shotgun sequence.
ACCESSION   DATCGC010002129 DATCGC010000000
VERSION     DATCGC010002129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2050)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2050)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2050
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32815"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..162)
                     /locus_tag="VIJ87_20205"
     CDS             complement(1..162)
                     /locus_tag="VIJ87_20205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446734.1"
                     /translation="MSVNNEADAQNNHDTAATDNDQGETPIYQKPILRKYDQIEQVKP
                     YGPSELEAG"
     gene            complement(182..430)
                     /locus_tag="VIJ87_20210"
     CDS             complement(182..430)
                     /locus_tag="VIJ87_20210"
                     /inference="COORDINATES: protein motif:HMM:NF017239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PqqD family protein"
                     /protein_id="HEY5446735.1"
                     /translation="MVDSSNIIWSIVDGEAVLLDTSSGHYFSLNPLATEIWSHLQTGN
                     SVPQIVSTIAGKYSVEEEIVRSDVSDLIGELQAAKLWN"
     gene            complement(486..1553)
                     /locus_tag="VIJ87_20215"
     CDS             complement(486..1553)
                     /locus_tag="VIJ87_20215"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEY5446736.1"
                     /translation="MQKTDQESRPRIIVLVPVRNEAWILRTFLDCASLWADHIIVADQ
                     SSTDGSAEIAAAFPKVTVMENSSPVYSEVERQRLLIEAARRFPAPRVLIAIDADEIVS
                     ANILTSADWEAAVHQPPGTVLGFAKVELFGSTEEYFLHSVEDKNSFIPFGFVDDGTSH
                     NGEVLHTCRIPERVDSPRFNLNDVVVLHLARINTLRAESKERWYRCFERISTPEKNIL
                     TIHRLYDFFERLRDQFNIRKTQHDWFSNYDKNGIDLTVDDAETIFWWDWEVLRFFKQH
                     GIAPFRHLDIWDVDWEALRERGLAQGIDGLPEKPIDVPLGLRDRLIRGVLKLPYARGL
                     VNRIMWRMFRYGIIRTDTPLT"
     gene            1610..>2050
                     /locus_tag="VIJ87_20220"
     CDS             1610..>2050
                     /locus_tag="VIJ87_20220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446737.1"
                     /translation="MLSFFKHSPYATCPENEKISSVEGVGTAGEMLSLSFSISKTDST
                     TELQLTSTDLLGPNGLIAKSCIDLFVVKVWEQAGIGVYQSQSVQVAELLLKDDRVPLR
                     DHYTRRGRCRHWKHLLRRSALYQPPDIRIDGDVFTSLDTNQSKQI"
BASE COUNT          517 a          514 c          474 g          545 t
ORIGIN      
        1 ctatccggcc tcgagctcac tgggaccgta aggcttgacc tgctctattt gatcgtattt
       61 gcgtaagatc ggtttttggt atatcggagt ctccccctgg tcattatcgg ttgcagcagt
      121 atcatgattg ttttgggcgt cggcttcgtt gttaactgac atttgtcctc gatacggtat
      181 tttagttcca cagctttgcg gcttgtagtt ctccaattag gtcgctcaca tcacttcgca
      241 cgatctcttc ctcaacactg tacttgccgg caatagtgct gacaatttga ggaacagaat
      301 tacccgtttg caaatgcgac cagatctcag tagcgagcgg attcaaagag aaatagtgac
      361 ccgaagaagt gtcgagtaaa acggcttcgc catccactat tgaccagata atgttgctac
      421 tgtctaccat gtcttctcct aagtgcgatt cattttaagt ttcgacttag ggaagtcaag
      481 cggtgctaag ttaacggtgt atcagttcta atgattccgt agcgaaacat acgccacatg
      541 attctattca ccagaccgcg tgcgtacggg agcttcagca cgccacgaat caatcgatct
      601 cgtaggccta gcggaacgtc gattggtttt tctggaagcc cgtcaattcc ctgcgctaat
      661 ccccgctcgc gcaaggcttc ccagtcgaca tcccagatat ccaaatgacg aaacggcgca
      721 attccgtgct gcttaaagaa gcgcaggact tcccaatccc accaaaagat tgtctccgca
      781 tcatcaactg tgagatcgat cccattcttg tcgtagttgc tgaaccaatc gtgctgggtc
      841 ttgcggatgt tgaattgatc tctcagccgt tcaaaaaagt catatagacg atgaatcgtt
      901 agaatgttct tttcgggtgt tgaaatgcgc tcaaagcaac gataccagcg ttccttactc
      961 tcagcacgaa gcgtattaat gcgcgccagg tgaagaacaa ccacatcatt caagttaaag
     1021 cggggcgaat caactcgttc cgggattctg caggtgtgca gcacttctcc gttatgactc
     1081 gtgccatcat cgacaaaccc aaatgggata aatgagttct tatcctccac cgagtgtagg
     1141 aagtattctt cggtggatcc aaagagttca actttcgcaa aacctaaaac agttccaggt
     1201 ggttggtgca ccgcggcctc ccagtccgcg ctagtaagaa tgttggccga aacgatctcg
     1261 tctgcatcaa tagcgattag cacgcgtggg gccgggaaac gtcgcgccgc ttcaattaac
     1321 aggcgctgtc gttcgacttc actgtagacc ggtgaggaat tttccatcac tgtaactttc
     1381 ggaaaagcag cggcaatttc tgctgatcca tctgttgatg actgatcggc gacaattatg
     1441 tgatcggccc acagacttgc acagtcaaga aaggttctca gaatccatgc ttcattgcgt
     1501 actggcacga ggacgataat tcgaggacga ctctcttgat cagttttttg cacgttaagt
     1561 agttgaagac tcgttattca acgaaacggg gtttgttact attcaaaaca tgctgtcatt
     1621 tttcaagcat tcgccgtacg caacgtgccc cgagaatgaa aagattagca gcgttgaagg
     1681 tgtcggaacc gctggcgaaa tgctttcgct ttcgttttct atctctaaaa ctgattcgac
     1741 tacagaactt cagttgacct caactgatct actgggtccg aacggcctca tcgcgaagag
     1801 ttgtatcgat ctattcgtcg tcaaagtctg ggaacaagcc ggaattggcg tctatcaatc
     1861 ccaatcagtt caagtcgcgg agttgctact caaagacgac cgcgtgccac tacgcgacca
     1921 ttacaccaga agaggacgat gtcgtcattg gaagcatctt ttacgtaggt ctgcactcta
     1981 ccaaccgcct gatattcgca tcgacggcga cgtgtttacg tcgctagata cgaaccaatc
     2041 gaaacaaatc
//
LOCUS       DATCGC010002130         2287 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_332040, whole genome shotgun sequence.
ACCESSION   DATCGC010002130 DATCGC010000000
VERSION     DATCGC010002130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2287)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2287)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2287
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_332040"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(122..1681)
                     /locus_tag="VIJ87_20225"
     CDS             complement(122..1681)
                     /locus_tag="VIJ87_20225"
                     /inference="COORDINATES: protein motif:HMM:TIGR02262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016405 - CoA-ligase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="benzoate-CoA ligase family protein"
                     /protein_id="HEY5446738.1"
                     /translation="MNITFPERFNMADYFLYQNLDKGRDSKVCLYFEDRSWTYAEVAK
                     LSNKTGNALRDLGLKIEDRVLMVLPDCPEFVWTWFGAARIGAVITMVNPLLPATDYEY
                     YLDYTRAPVAVVHSSVLPTFAEATKGARYLKVVCVVGDTAVNPSNSRSSFVSFEECVA
                     AASDDCTKADTRRDDMAIWLFTSGSTGHPKGAVHLQHDLPYNTEVFAKATMGVNENDL
                     TVSVPKLFFGYATGTNLLFPFAVGGATALFAERSTPEKMYEVIKRYQPTILTTVPTMI
                     NSMLNVKDVKPADIASLRFCYSAGEALPIELYERWTNSFGVDICDGIGSAEMFHIYIT
                     NRPGDIKPGSLGRIVDGYEARVVDAEGAEVQPGEMGTLRIKGDSAALCYWNAHEKSKE
                     TFAGDWCTTGDQFHVDEEGYYWYHGRTDDMLKVSGVYVAPAEIENCLLQHEAILECAV
                     IGHESNGLTKPKGFVVLREGYVASQQLAEEIKQFVKTNIAVYKYPRWIEFVESIPKND
                     RGKTDRRKLKS"
     gene            complement(1769..2104)
                     /locus_tag="VIJ87_20230"
     CDS             complement(1769..2104)
                     /locus_tag="VIJ87_20230"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HEY5446739.1"
                     /translation="MERDRRGAPRVRVNLSARWEGALSNENATITDLSRTGCFVLSGG
                     KVQVRELIWLEIELPNLRLLHFWAEVVDEASEIGFAVKFNSSSQEDQERLANYIAEVF
                     ETPPVKRPQ"
BASE COUNT          532 a          595 c          564 g          596 t
ORIGIN      
        1 attctagacg ttgattccag actcgggata attcttgatt cgtttaagtt tttcccaaat
       61 gctaatcggg tatggtggtg agcgtcgcgt cattcgcgac atgaacctgc gcaatccatc
      121 attaggattt tagttttctt cgatccgtct ttccacgatc gttcttagga atcgattcca
      181 caaactcgat ccagcgcgga tacttgtaga cggcgatgtt agttttaacg aactgcttga
      241 tctcttcggc gagttgttga ctcgcaacgt agccttcacg cagaacgaca aatcctttcg
      301 gtttagtaag cccattcgat tcgtggccaa tgacagcaca ctccagtatg gcttcgtgct
      361 gaagaagaca attctcgatt tctgctggcg ccacgtagac gccggatact ttcaacatgt
      421 cgtcagtgcg gccgtgatac cagtagtaac cttcctcatc gacatgaaat tgatcaccgg
      481 tagtgcacca atcgcccgca aatgtttctt ttgatttttc gtgtgcgttc caataacaca
      541 gtgccgctga atcacctttg atacgaagcg ttcccatttc cccaggttgc acttctgctc
      601 cttcagcatc caccaccctc gcttcgtaac catcaacaat tcgacccaga ctgccgggct
      661 tgatatcgcc gggccgattt gtgatgtaga tatgaaacat ctcagcggac ccgatgccat
      721 cgcagatgtc gacgccaaat gaattcgtcc aacgctcgta tagttcgata ggcaacgctt
      781 cgccggccga atagcaaaac cgcagactgg caatatccgc cggcttaacg tccttcacat
      841 tgagcatgga attgatcatg gtgggcaccg tcgtcaggat ggtcggttga tatcgcttta
      901 tgacctcgta cattttttct ggagtggatc tttcagcgaa aagtgcggtg gccccaccca
      961 cggcaaaagg aaacaggagg ttagtgccgg tggcgtatcc gaagaatagc ttgggcacag
     1021 agacggttag atcattctcg tttacaccca tcgtcgcctt tgcgaagacc tctgtgttgt
     1081 aaggcagatc gtgttgcagg tggacggctc cttttgggtg gcccgttgat cctgatgtga
     1141 acaaccagat ggccatgtcg tctcgacgcg tgtctgcttt tgtgcaatcg tcactagccg
     1201 ctgcgacgca ttcttcgaag ctcacaaaag aggatcgaga gttggaagga ttgaccgcag
     1261 tatccccaac aacacacacc accttcaaat agcgcgctcc tttggtggcc tctgcgaagg
     1321 ttggcaagac agaagaatgg actacagcga caggtgcgcg agtgtagtcg agatagtatt
     1381 cataatcggt tgccggcaag agcgggttga ccatggtaat gactgcgccg atacgagcgg
     1441 ctccgaacca tgtccaaaca aactccggac agtctggcaa aaccatcagc acgcggtctt
     1501 cgattttgag accgagatcc cgcaaggcgt tgccggtctt gtttgagagc ttggcaacct
     1561 ctgcgtacgt ccaggaccga tcttcaaaat acaagcagac tttgctatca cgacccttat
     1621 caagattttg ataaagaaag tagtccgcca tgttgaagcg ttctgggaat gtaatattca
     1681 tatcggatgt tgtttcacct gacgcgagac taaggggagg tgaatgttga atattaatcg
     1741 agcgtcattg aatactgagg ttggatccct attgcggtct cttaaccggt ggcgtctcaa
     1801 acacttctgc gatgtagttt gcgagacgct cttggtcttc ttgtgagctg gaattgaatt
     1861 tgacggcaaa gccgatctcc gatgcttcgt cgacgacttc agcccagaaa tgtaatagcc
     1921 gaagattggg caactcgatc tccaaccaaa tcaactcgcg aacttgaacc ttcccgccag
     1981 aaagcacaaa gcatccagtg cgactgaggt ccgtgatggt ggcgttttcg ttggacagag
     2041 cgccctccca tcttgctgac aagttgactc ttacgcgtgg cgcacctcgt ctgtctctct
     2101 ccatctcgtt tctcttttgg ttagcgtccg gcgaacgggc agccggctgg gccatgtcct
     2161 agatcaaggt aggtacgtgc ttcccagagt tcgggaaaga acttcttatc aagtgtcgtt
     2221 cttaagtatc cgattccttc ggagccacca gtcccacgtt tggccccaac catgcgctcc
     2281 accattt
//
LOCUS       DATCGC010002131         1137 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_32832, whole genome shotgun sequence.
ACCESSION   DATCGC010002131 DATCGC010000000
VERSION     DATCGC010002131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1137)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1137)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1137
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32832"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            159..1112
                     /locus_tag="VIJ87_20235"
     CDS             159..1112
                     /locus_tag="VIJ87_20235"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: protein motif:HMM:NF004159.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HEY5446740.1"
                     /translation="MRLFHGTDNAGIHRPTVLTLGVFDGLHLGHQLIMQTVVDRARAV
                     GAVPTVITFDPHPRAVLHPESAPPLLQTFDQKIEAFGVLGIEQTIVVRFTEEFSSIRA
                     ADFLRDVVKARLHAQEVYLGKGFAFGHDREGNIELLKRLGAQLGFIAGEVPEVSLHGR
                     RVSSSKIRELLARGQVNLARRMLGRPYGVEGRVEKGAERGHKLGFPTANLRPQNRVIP
                     RNGVYVTGTLIDGQWRRSVTNIGVRPTFGDATEPSVETYVMNWDGDLYGDVIRVRFLY
                     RLRDERKFSSLEELKTQIDRDVHRAISYFERAGTKHMLAVI"
BASE COUNT          272 a          269 c          318 g          278 t
ORIGIN      
        1 gtggagttcg cgtacgacgg attaacaatt tcagattgaa gatttcagat tgcagcgtgt
       61 ggcacagact tcagtctttg ttttgggatc tacttgaact tgaggtctaa acgacactta
      121 gaacacagac tgaggtctgt gccacacgca caactcttat gcgcttattc catggaactg
      181 ataacgccgg cattcaccgt cccacggtgt tgacgcttgg cgtgtttgac ggtctgcacc
      241 tcggtcacca gttgatcatg cagaccgtcg ttgatcgcgc gcgagcggtt ggtgcagttc
      301 caacggttat cactttcgat ccgcatccgc gcgcagttct acatcctgaa tcagcaccac
      361 cgttgttaca gactttcgat caaaagatcg aggcgtttgg agtgttggga attgaacaaa
      421 ctatcgtcgt gagattcacc gaagagtttt cttcgattcg agctgcggac tttttacgag
      481 atgtggtgaa ggcgagactg catgcccagg aagtctatct cggaaaaggt ttcgcattcg
      541 gacatgatcg agaaggcaac atcgaactct tgaagagact cggcgcccag ttaggtttta
      601 tagctggcga agttccagag gttagtttac atggacgtcg tgtgagttcg agcaagattc
      661 gtgaactttt ggcgcggggc caggtaaatc ttgcgagacg tatgctgggt cgaccgtacg
      721 gcgttgaggg tcgagtggaa aagggcgcag aacgaggcca caaactaggc ttcccaacag
      781 ccaacctgcg cccacagaac cgcgtcatac caaggaacgg tgtttacgtc accggaacgt
      841 tgatcgacgg ccagtggcgg cgcagcgtaa caaatatcgg ggtcagaccc acatttggcg
      901 acgctacgga accttcggta gagacttacg taatgaactg ggacggggat ctgtacggtg
      961 atgtgatccg cgtccgtttt ttatatcgtt tacgcgacga acgaaagttc tcgtccttgg
     1021 aagaattgaa aacacagatt gaccgcgacg ttcaccgcgc gatcagttat ttcgaacgcg
     1081 ccggaacgaa gcacatgtta gcggtgattt agcgatgtcc gatgcttcag cttgtcg
//
LOCUS       DATCGC010002132         1095 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_32853, whole genome shotgun sequence.
ACCESSION   DATCGC010002132 DATCGC010000000
VERSION     DATCGC010002132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1095
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32853"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..916
                     /locus_tag="VIJ87_20240"
     CDS             <1..916
                     /locus_tag="VIJ87_20240"
                     /inference="COORDINATES: protein motif:HMM:NF033545.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="IS630 family transposase"
                     /protein_id="HEY5446741.1"
                     /translation="EIAKLTGYTSVQISRIRRRFAEAGLTGLQEKPRSGRPRTVSSRK
                     TAQVVAMTLKAPAWGLSHWSSRDLSAKVGLSHSTVHRIWQAHALKPHRIETFKFSKDP
                     KAEEKIYDVVGLYMNPPTNAVALSLDEKTQIQALSRTQPMLPLRPGLSARQTHDYKRN
                     GLTSLYAALEIASGAVIGECSATHTGADFLRFLQLINRSYRKRDLHVILDNSSTHSTP
                     AVMAWLETHPRVHFHFTPTGASWLNMVEAWFSILTRKSVRRGSFDTVRALVRHIQNYI
                     QHWNQRPTPFVWTKDPATIIKKAVRRAR"
BASE COUNT          268 a          312 c          278 g          237 t
ORIGIN      
        1 tgagatcgct aagttgaccg gttacacctc cgttcagatc agtcgtattc gacgccgctt
       61 cgcggaagca ggattgactg gattgcaaga aaagccccgc agcggccgtc cgcgtacggt
      121 cagttcccga aagacggcgc aggtggttgc aatgactttg aaggctcccg catggggact
      181 gagccattgg agttcgcgag atttgtcggc gaaagtggga ctgtctcaca gcacggttca
      241 ccgtatctgg caggcgcatg cccttaagcc ccatcgaatc gaaaccttca agttcagcaa
      301 ggatcccaaa gccgaagaaa agatctatga tgtcgtcggt ctctacatga atccgccgac
      361 caacgccgtt gctctaagtc ttgatgagaa gacccaaatt caggctctca gtcgaaccca
      421 accgatgttg ccgcttcggc cagggttgtc ggctcgccaa actcacgatt acaagcgcaa
      481 cggtctgacc agtttgtatg ccgcacttga aattgcgtcg ggtgcagtca taggcgaatg
      541 ctcggccacg cacaccggag cggattttct ccggttcctt caattgatca atcgcagcta
      601 tagaaaacgc gacctccatg tgattctgga caactcctcg actcattcga ctcctgctgt
      661 aatggcttgg ttggaaactc atccccgagt ccactttcat ttcactccga ccggagcatc
      721 ttggttaaac atggtcgaag cctggttcag tattctcacg cgcaaatccg tgcgtcgcgg
      781 ttccttcgac acggtcaggg cactggttcg gcatatccag aactacatcc aacactggaa
      841 ccagagacca acgcctttcg tttggactaa ggatccggcc accattatta agaaagcggt
      901 acgacgtgct cgttaacatc acttttagga cagaacacta acgaggcttc gcctcagacc
      961 caaaatccat gtagggcatg gaaggactcc gcttgcgtgc atgagatgac gatggtaaac
     1021 caacgccatg aatgggaccc ccgtaaggcg atcacccggc cgtaaaggca ccccgcaagc
     1081 ggagtcgaac tccaa
//
LOCUS       DATCGC010002133         1681 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_130302, whole genome shotgun sequence.
ACCESSION   DATCGC010002133 DATCGC010000000
VERSION     DATCGC010002133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1681
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_130302"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..293)
                     /locus_tag="VIJ87_20245"
     CDS             complement(<1..293)
                     /locus_tag="VIJ87_20245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446742.1"
                     /translation="MYRILLISLLTFLATESLQAQTVKVNESLIVSTEWLGKHLEDES
                     LVLLQVGEKDEFTAAHIPRAQLIQTADISTPRGQGLTLEMPPVDQLKATFEKLG"
     gene            533..910
                     /locus_tag="VIJ87_20250"
     CDS             533..910
                     /locus_tag="VIJ87_20250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446743.1"
                     /translation="MPKQSDFENTFAKLKEILKAYESKLIVVVDTPGHYGLETPHLMK
                     NKHRVYFGGVKIGKSYVSYHLMPMYAIEELRNAMSPELKKRMQGKSCFNFSMPDEKLF
                     KELAKLTRIGFKAFTSKDFYSKF"
     gene            926..>1681
                     /locus_tag="VIJ87_20255"
     CDS             926..>1681
                     /locus_tag="VIJ87_20255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446744.1"
                     /translation="MPRTFDCPKCGAPVEFSNSQLGQEFTVRCNYCNSALAEPSMGRP
                     AHVVHLKIDSPGSFKLSKLVWVIVLVPVLGVVAGMVAMLAGFAPFFLSKSGNTNTNGR
                     GGPFTPIGGTRPGSEFATVLMKFGTEGIGAGMFTDARSIALDGEGHIYVGEYSGGRIQ
                     VFDSAGKFVTQWTANPKMPLRGLAADRKGTVYVVQAGKIQKFEGASGKPLGEMTSADG
                     SGFDDISAAADGGFVAAWSRNTDDIVKFDSGGNV"
BASE COUNT          429 a          391 c          468 g          393 t
ORIGIN      
        1 cccaactttt caaacgtcgc cttaagttga tcaactggcg gcatctccaa agtcaggcct
       61 tggcctcgcg gcgtggaaat gtcggccgtt tgaatcaact gggcgcgtgg aatgtgggcc
      121 gcagtgaatt cgtctttctc gcccacttgg agaagcacga gcgactcgtc ctccaaatgc
      181 ttgccaagcc actcggttga gacaatgagt gattcgttaa ctttgactgt ctgggcttgc
      241 aggctctcag tagccaggaa agtgagcaac gaaatcaaaa gtatgcggta cataattgtc
      301 tcctctggca gggaaatgat tggaaaagaa taagctcaaa caacaagcga gacaaacagc
      361 caaaatgtcc gatatgcttt agcttgtagc ggccggtgca gtagcccgac tgtcaaggag
      421 ggctcggggt tgtgctgatc gacgcctagc tcacgttgag ccctccttga cagtcgggct
      481 actgcaccgg ctgctacaag acagacgcat atcggacatt agagactcat tcatgcctaa
      541 acaatccgat ttcgaaaaca ccttcgcgaa acttaaagag atcctcaaag cctacgaatc
      601 aaaactgatc gtggtcgtcg acacgccagg tcactacggt ctcgaaactc cgcacttaat
      661 gaagaacaag catcgcgtct attttggcgg agttaagatt gggaagtcgt atgtgagtta
      721 ccacttgatg cccatgtatg cgatcgagga acttcgaaat gcgatgtcgc ccgagttgaa
      781 aaaaagaatg cagggaaagt cgtgcttcaa cttttcaatg cccgatgaga agctcttcaa
      841 ggaattggct aagctgacca ggatcggatt caaagccttt acgtcaaaag atttctattc
      901 aaaattctaa ggagtcaaag gaaaagtgcc acggactttt gattgtccta agtgtggggc
      961 cccggttgag tttagtaata gtcagctggg ccaggagttc actgtaaggt gtaactactg
     1021 caacagtgct ctcgccgaac cgtcgatggg gcgaccagca cacgttgtgc acctgaagat
     1081 tgattcaccc ggcagcttta aactatcaaa attagtctgg gtaatagtcc tggttcccgt
     1141 gctcggtgtt gtcgcgggca tggttgcaat gcttgcgggc ttcgcgccat tttttctctc
     1201 gaagagcggc aatacaaaca caaacggccg aggcggtcca ttcacaccga tcggtggaac
     1261 gcgaccggga tccgagtttg cgacagttct gatgaagttt ggaactgagg gtatcggggc
     1321 cggcatgttt accgatgcac gaagtatcgc actcgatggc gagggccata tttatgttgg
     1381 ggagtactcc ggcggacgga ttcaggtgtt cgattcagcg ggaaagtttg ttacgcagtg
     1441 gacggcaaat ccaaaaatgc ctttgcgtgg attggccgct gatcgaaagg gaactgtcta
     1501 cgttgtccag gccggaaaga tccagaagtt tgagggtgct agtgggaagc ccctgggtga
     1561 aatgacatca gcagatggtt cgggctttga cgatatatcg gcggctgcgg atggaggctt
     1621 tgtggcagcg tggtccagaa acacagacga catcgttaag ttcgactcag gcggcaacgt
     1681 c
//
LOCUS       DATCGC010002134         2319 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_427585, whole genome shotgun sequence.
ACCESSION   DATCGC010002134 DATCGC010000000
VERSION     DATCGC010002134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2319)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2319)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2319
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_427585"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(75..1085)
                     /locus_tag="VIJ87_20260"
     CDS             complement(75..1085)
                     /locus_tag="VIJ87_20260"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: protein motif:HMM:NF013528.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004527 - exonuclease activity [Evidence
                     IEA];
                     GO_function: GO:0008441 - 3'(2'),5'-bisphosphate
                     nucleotidase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional oligoribonuclease/PAP phosphatase
                     NrnA"
                     /protein_id="HEY5446745.1"
                     /translation="MLSQVVELIESKKRFAITSHIRPDGDSLGSSLGLYWLLRALDKD
                     VEVIMRDPVPHAYQQLPGVQNVRVVPAVDPSYHAVFVIECSDITRPGLIDLEKQVVVN
                     IDHHSTTALFGTINWIDSTASAVGEMIYNLCKATGVRVTKEIAECVYTALITDTGSFH
                     YSNTTERTFKVASELVRIGVKPAKTAEAVFASYPWSRIQLMGAVLSTVRRDESGRVAC
                     MRQSLEMQRDSQASDEDADGFVNYPLTVEEVEAVAMLKESEPGIYRTSLRSKGDVNVA
                     KVAEMFGGGGHRNAAGCTLKGDWEEVETEIVSLLQEAVKRANGLKDITEDALKDPGLM
                     SV"
     gene            complement(1196..1621)
                     /gene="rbfA"
                     /locus_tag="VIJ87_20265"
     CDS             complement(1196..1621)
                     /gene="rbfA"
                     /locus_tag="VIJ87_20265"
                     /inference="COORDINATES: protein motif:HMM:TIGR00082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HEY5446746.1"
                     /translation="MQEQSAGIYLLLLTPLPTEAMRRKERVAEIILEEITQIVGYELE
                     DPRLTMVTVTEVRMSNDKRSARVYVAVAGDESEHKLALAALKRAAPYVRKQLGLSLNL
                     PRTPEIHFVHDRVEEDGERVDQLLHEIERDWESKGKDEE"
     gene            complement(1628..>2319)
                     /locus_tag="VIJ87_20270"
     CDS             complement(1628..>2319)
                     /locus_tag="VIJ87_20270"
                     /inference="COORDINATES: protein motif:HMM:NF023413.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="EF-Tu/IF-2/RF-3 family GTPase"
                     /protein_id="HEY5446747.1"
                     /translation="ALLQTTKRGIEALGESEVKELLVIIKADVQGSVEVLKSTLQKLS
                     TDRVKVKVIRSGVGAITESDVLLGSATQAGSSSSAVVIIGFNVRPEARAADVAKQESV
                     DIRLHSIIYKVEEEIRAAMIGMLEAIEKEKILGKAEVRDVFRVPKAGVVAGCMVIDGL
                     IKRNAKARLIRDGVVAWEGNIGSLRRFKDDVSEVRDGFECGISLENYNDVKVGDQIEA
                     YVVERVAATEL"
BASE COUNT          524 a          639 c          553 g          603 t
ORIGIN      
        1 cggaaaagcg cttgagtaac tagctctctc tgatctgttt ggatctgcga aaatctgcgg
       61 ctgagaactc ttctctagac tgacatcagg ccaggatctt tcaatgcgtc ttcagtaatg
      121 tccttaaggc cgttcgcacg cttaactgct tcctgtagaa gtgaaacgat ctctgtctca
      181 acttcttccc agtctccctt tagcgtgcaa ccggctgcat ttcggtgacc acctccgcca
      241 aacatctcgg cgactttggc aacattcaca tcacccttgg aacgcaaact agttcggtag
      301 atgccgggct cggactcttt tagcatcgca acggcttcaa cctcctcaac cgtcaacgga
      361 tagttaacaa agccgtcggc atcttcgtcg gaagcctggg agtctcgttg catttcgagt
      421 gattggcgca tgcaggcaac gcgcccgctc tcgtcccgac gaactgtcga caacactgcc
      481 cccatcaatt gaattctgct ccaagggtag ctggcaaaga ccgcttccgc cgtttttgcg
      541 ggtttcactc cgatgcgtac gagttcagat gcgactttga aagtgcgctc agttgtattg
      601 gagtagtgaa aagatccggt gtcggtaatg agagcggtgt aaacgcactc agcaatctct
      661 tttgtgactc gaacgccggt agccttgcag aggttgtaga tcatttcacc gactgctgaa
      721 gcagttgaat cgatccagtt gatggttcca aacagggcag ttgttgaatg atgatcgata
      781 ttaacgacga cttgcttctc gagatcgatc aatcctggtc gggtaatgtc agaacattca
      841 ataacgaaca ctgcgtgata tgaagggtca acggcaggga ctacgcgaac gttttgaact
      901 cctggaagtt gttggtaagc gtggggcact ggatctcgca tgattacttc gacgtctttg
      961 tcgagtgcgc gtaacaacca gtacaacccc agtgatgatc ccagactgtc accatccgga
     1021 cggatatgtg aggtgatcgc gaagcgtttc ttcgactcga tcaactcaac tacttgacta
     1081 agcatttgtt acctatgagg agttgagcct gtgcgtcagg tccctggtct ttggacttag
     1141 gtcttcgacc ttgaataacg tctacaaagg tcaaagactt aaggccaaag gccattcatt
     1201 cctcatcctt tcctttactt tcccaatctc gctcgatctc atggagcaac tggtcgactc
     1261 tttcgccgtc ttcctcaacg cgatcatgaa cgaaatgaat ttccggtgtt cgcggtagat
     1321 tcaacgatag tccgagttgc tttcgcacat acggtgcagc gcgctttaga gctgccaatg
     1381 ctagtttgtg ctcactttcg tcgcctgcga cagctacata cacacgggct gagcgcttgt
     1441 catttgacat tcgaacctca gtcaccgtaa ccatcgtaag tcgcgggtct tcgagttcat
     1501 acccaacgat ctgggtgatc tcttcaagaa tgatttccgc aaccctttcc ttacgacgca
     1561 ttgcttccgt aggcagggga gtcagcagga gcaggtaaat accggccgac tgctcctgca
     1621 cctgctccta taattcggtg gccgctactc gctcaaccac gtacgcctca atctggtcgc
     1681 ctacctttac gtcgttatag ttttccagac tgataccgca ttcaaatcca tcacggactt
     1741 ccgaaacgtc atccttgaat cgtcgaagcg agccgatgtt accttcccag gcaactacgc
     1801 catcgcgaat tagacgagcc tttgcgttgc gcttgatgag cccatcaatg accatgcaac
     1861 ccgcaacgac gccggccttc ggtacgcgaa atacatcgcg gacttcggcc ttgccaagaa
     1921 tcttctcttt ctcgattgct tcgagcatgc cgatcatggc tgcgcgaatc tcttcttcaa
     1981 ccttatagat gattgagtgc aaccgaatgt ctacagactc ttgttttgcc acgtcagctg
     2041 cccgagcttc gggtcgaacg ttaaagccga tgataactac cgccgatgac gacgatccgg
     2101 cttgcgttgc ggagccgagt agaacgtctg actcagtgat ggcaccgaca cccgaacgaa
     2161 taactttgac tttgactcga tcggtcgaca gtttttgcag ggtcgacttc aacacttcga
     2221 ctgaaccctg aacgtcggcc ttgatgataa ccagcagttc cttgacttca ctctcgccga
     2281 gggcttcgat accgcgcttg gtcgtctgga gcagtgccg
//
LOCUS       DATCGC010002135         3134 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_161556, whole genome shotgun sequence.
ACCESSION   DATCGC010002135 DATCGC010000000
VERSION     DATCGC010002135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3134)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3134)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3134
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161556"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1531
                     /gene="dnaK"
                     /locus_tag="VIJ87_20275"
     CDS             <1..1531
                     /gene="dnaK"
                     /locus_tag="VIJ87_20275"
                     /inference="COORDINATES: protein motif:HMM:NF001413.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HEY5446748.1"
                     /translation="GQKVERAVITVPAYFNDSQRQATKDAGKIAGLEVMRIVNEPTAA
                     ALAYGLDKKKDETIAVFDFGGGTFDVSILEVGEGVVEVKSTNGDTHLGGDDIDERLIE
                     WIVEEFKKDQGIDLSNDKMALQRLKEAAEKAKIELSSTMETEVNLPFVTADQSGPKHL
                     AMKLTRARFEQLVDPILTRLRHPVEQALKDANLDAKKIDEVVLVGGSTRIPKVQEIVK
                     EMFGKEPNKSVNPDEVVAIGAAVQAGVLSGEKTDILLLDVTPLSLGIETLGGVFTKLI
                     ERNTTIPTRKSEIFSTASDNQTSVEVHVLQGERPMASDNRTLGKFHLVGIPPAPRGMP
                     QVEVAFDLDANGIVNVSAKDMGTGREQKITITASSGLSKDEIDKMMKDAESHSADDAR
                     KREEIEARNRLDGLVYQMEKTLADNREKVGAVAGDVDTAIAEAKKALAEGGVETMNEA
                     FNQLQTASHKLAEALYQQAPAPEAGATEDQASAAGASSSGGGGDDNVIDAEYVDVDEN
                     K"
     gene            1857..3029
                     /gene="dnaJ"
                     /locus_tag="VIJ87_20280"
     CDS             1857..3029
                     /gene="dnaJ"
                     /locus_tag="VIJ87_20280"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF008035.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HEY5446749.1"
                     /translation="MANKDYYEILGVKRDAKPEEIKKAYRRLARKYHPDVNPGDKASE
                     ERFKLTSEAHDVLSDPKKRSVYDRFGQYSDNLADAAARGAGPSSGGTRTPPGFDFTGF
                     DWSTATGGPSGGGSGSSFRDIFSDLFGGGAAKEKEPPRPQPKRGADIEMPLALTFEEA
                     IKGLTTNITVNRSEQCSRCNGAGDIGGPVVVCSTCKGTGQVQRAGGRLRFAQECPDCG
                     GSGRRRSPCSLCKGKGTLPKIETVKVRIPAGVETGSRVRIAGKGESGRMGAPAGDLHI
                     ITNVGQHKYFTRKGDNIYVTVPITVPEAALGAKIEVPTVDGKTQLRVPPGTQSGQKFR
                     LRDRGAPSLRNPGAKGHQFVEVQVTLPHVISEETKELLREYSKLNTTNPRIEMGLE"
BASE COUNT          806 a          772 c          920 g          636 t
ORIGIN      
        1 tggccagaaa gtggaaaggg ccgttatcac agttcccgcg tacttcaacg actcacagcg
       61 ccaggcaact aaagacgcag gcaagattgc cggtctcgaa gtgatgcgta tcgtcaacga
      121 gccgaccgcg gccgcgctgg cctacggtct cgacaagaag aaagacgaaa ccatcgcagt
      181 gtttgacttt ggtggcggta ctttcgacgt ctcgattctg gaggttggcg aaggcgtagt
      241 cgaagttaag tcgaccaacg gcgacacaca cctcggcggc gacgacatcg acgagcgctt
      301 gatcgaatgg atcgttgaag agtttaagaa agaccagggc atcgatcttt caaacgacaa
      361 gatggctttg cagcgactca aggaagctgc cgaaaaggcc aagatcgaat tgtcgagcac
      421 gatggaaacg gaagttaact tgccgttcgt cactgcggat caatccggtc caaagcacct
      481 cgcgatgaaa ctcacgcgcg cgcgcttcga gcagttggtg gatccaatcc ttactcgctt
      541 gcgacatcca gtcgaacagg ctttgaagga tgcgaatctc gatgccaaga agatcgatga
      601 agtagtactc gtcggtggtt cgacacgtat tccgaaggtc caggaaatcg tgaaggaaat
      661 gttcggcaaa gaaccgaaca agagtgtgaa cccggacgaa gttgtggcga tcggtgcggc
      721 tgtccaggct ggtgtgttgt cgggtgagaa gactgacatt ctgttgctcg acgttacccc
      781 gctcagcctc ggcatcgaaa cgctcggtgg agttttcacc aagctgatcg aacgcaacac
      841 gacgatccca acgcggaagt cggagatctt ttcaactgcg tctgacaacc agacctcggt
      901 tgaggttcac gtgctacagg gcgagcgacc aatggcgagc gacaatcgca cgttaggtaa
      961 gtttcacctc gtaggcattc cacctgcacc gcgcggcatg ccgcaagttg aagtcgcttt
     1021 cgaccttgac gcaaacggaa tcgtgaacgt gtcagccaaa gacatgggca ctggccgcga
     1081 gcagaagatc acgatcacag catcatctgg tctgtcgaaa gacgagatcg ataagatgat
     1141 gaaagacgct gagtcgcact ctgctgacga cgcacgtaag cgcgaggaaa tcgaagcgcg
     1201 caatcgtctc gatggtcttg tctaccaaat ggagaagaca cttgccgata accgtgaaaa
     1261 agttggcgcg gttgccggtg atgtcgatac ggccattgcc gaagccaaga aggcgttggc
     1321 cgagggcggc gttgaaacaa tgaacgaggc gttcaatcaa ttgcagactg cgtcacacaa
     1381 gttggcggag gcgctttatc agcaggcacc tgcaccagag gctggtgcga ctgaggatca
     1441 agcatctgcc gcgggggcgt catcgtcggg cggtggtggt gacgacaacg tcatcgacgc
     1501 cgagtatgta gacgtcgacg aaaacaagta agggtattgc gatttccaat tgccgaatga
     1561 agaggcggag acaagctttc ctccgccttt tcttcaagcg gtggcacaga cttcagtctg
     1621 agaactggga atgcgcagtc gaggccgacg ggtactaaag atcattggtc atatatcatt
     1681 taacattttt catttggtaa attgaggagg acgcgatgtg gttgagagtc agcgtagggt
     1741 ccgattcaga tgaccaactg acaaatgtca aatgatatat gaccaatgat tctgatcgag
     1801 actatcagct tggaagtgtt gctcgcacag actgaagtct gtgccacttg gtgcacatgg
     1861 ctaacaagga ctattacgaa atacttggcg tgaagcgcga cgctaagccg gaagagatca
     1921 agaaggctta tcgacggctc gcgcgtaagt accatcccga cgtaaacccg ggtgataaag
     1981 cctccgagga acgcttcaaa cttacctcgg aagcgcacga tgtgctctca gatccgaaga
     2041 agcgaagtgt ctacgatcgc tttggacaat actctgacaa tctggccgat gccgcagcac
     2101 gaggtgctgg accatcgagc ggcggtactc gcacgcctcc cggatttgat ttcaccggtt
     2161 ttgattggag cactgcgaca ggtggaccga gtggaggtgg aagcggcagt agtttccgcg
     2221 acatcttctc ggatctgttt ggcggaggcg ctgccaagga aaaggaacca ccacgtcctc
     2281 agccaaagcg cggcgccgat atcgaaatgc ctttggcgct cacgtttgaa gaagctatca
     2341 aaggcttaac cacaaacatc accgtaaacc gttccgaaca atgttcacgc tgcaatggcg
     2401 ccggcgacat tggaggtccg gttgttgttt gttcgacttg taaaggaacg ggccaggtac
     2461 agcgtgcggg aggccgtttg cggtttgcgc aagaatgtcc tgactgcggc ggctcgggtc
     2521 ggcgacgttc gccctgctcg ctttgcaaag gcaagggtac gctgccgaag attgaaacgg
     2581 tgaaggttcg gatacccgct ggagttgaaa ctggatcacg agtgcgtatt gccggcaaag
     2641 gtgaaagcgg acgaatggga gcaccggcgg gcgacttgca catcatcacc aacgtcggac
     2701 agcacaagta tttcactcgc aagggcgaca acatctacgt gaccgttccc atcactgtcc
     2761 cggaagctgc gctaggcgca aagatcgaag tgcctacagt ggatggtaag acgcaattgc
     2821 gtgtgccacc ggggacacag tcgggacaaa aatttcgcct tcgtgatcgg ggcgcacctt
     2881 cgttgagaaa ccctggcgcg aagggacatc agtttgtgga agtgcaagtg acgttacccc
     2941 acgtcatctc ggaagagacg aaggaactat tgcgcgagta ttcgaagttg aatacgacga
     3001 atccgcgcat agaaatgggg ttagagtaag gggcctggtc tttggactta ggcccttggc
     3061 ctttgtttga atttcgagtt aaaaggaaat caaagaccaa agtcccaaga ccaaagacct
     3121 aagcagtcat gagc
//
LOCUS       DATCGC010002136         1094 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_463195, whole genome shotgun sequence.
ACCESSION   DATCGC010002136 DATCGC010000000
VERSION     DATCGC010002136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1094)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1094)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1094
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_463195"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(216..>1094)
                     /locus_tag="VIJ87_20285"
     CDS             complement(216..>1094)
                     /locus_tag="VIJ87_20285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446750.1"
                     /translation="IINNGPRSEASVKNVQAGNRGGVHIWIILPVIEVTTANALFKTN
                     GRTLKSVPTCSMRDNIIVAPLGRAVTFFAAGAVVVNRNRLVTEASTLRDLDLLATTVL
                     IGNLGLSNEWTIGLLLVLILIIIGRGKNDMTPARLCTFAKLLGLLNPGPPVSFWPPLV
                     RRWVTGKTMLCENQITFDVTEEPFGFGISSIFVFSLDDVGFTDNQCELTSTNQFLFTQ
                     AILAGGSVRESDNRFSETWFHVAFSAWSIGGMNTTTDNQATHCLRAQSFLGLRVFEDN
                     LNFVNAFCPNECKDGG"
BASE COUNT          281 a          298 c          252 g          263 t
ORIGIN      
        1 aacggtttac ctgtgcaaaa ttaattcgaa tgccaatgaa ccttcggcgt cgagcttgat
       61 tggctcaact cttaaaccgt taaaacggtt cctcaaaact aggcactact gcaaccccaa
      121 gctgaagctt ggggagaatg agagttttgc aagaacttct ttagcttgtc gatgtggcaa
      181 tggctgaatg ctcagggtac caccgcaaaa actcttcacc caccgtcttt acactcattt
      241 gggcaaaacg cattgacgaa attcaaattg tcttcaaaca cacgcaatcc gaggaagctc
      301 tgcgcgcgca gacaatgcgt cgcctggttg tcggtagtcg tgttcatgcc gccgattgac
      361 cacgcagaga acgccacatg aaaccacgtc tctgagaagc ggttatcgga ttcgcgcaca
      421 cttcctcctg caagaatcgc ctgggtaaac aggaattgat tggtgctggt gagttcacac
      481 tggttgtctg taaatccgac atcatcaagc gagaagacaa aaattgaact gataccaaaa
      541 ccaaaaggtt cttccgttac gtcgaacgta atctggttct cgcaaagcat cgtcttcccg
      601 gttacccatc tcctaaccag tggcggccag aacgaaactg gtggaccggg attgagtaac
      661 ccgagcagct tagcgaaagt gcaaagtcgc gccggcgtca tatcgttttt gcctctgccg
      721 ataatgatca ggatcagcac caacaaaaga cctattgtcc attcattgct caatcccagg
      781 ttacctatca ggactgtcgt tgccagcaaa tccaggtcac gcaacgtcga agcttccgtc
      841 accagtcgat tgcgatttac taccactgct cccgctgcaa agaaagtaac cgctcgtcca
      901 agcggcgcga cgatgatgtt gtcgcgcatc gaacaggtcg gtacgctctt taacgtcctc
      961 ccgttcgtct taaacagcgc gtttgctgtc gtcacttcta taaccggcag gatgatccag
     1021 atgtgaacgc ctccgcgatt gccggcttgc acattcttca ccgacgcttc tgatcgcggg
     1081 ccgttattga taat
//
LOCUS       DATCGC010002137         2085 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_198141, whole genome shotgun sequence.
ACCESSION   DATCGC010002137 DATCGC010000000
VERSION     DATCGC010002137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2085)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2085)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2085
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_198141"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..685
                     /locus_tag="VIJ87_20290"
     CDS             <1..685
                     /locus_tag="VIJ87_20290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446751.1"
                     /translation="ALKNRFGLQEDQPLVLAASTHAPEERIILESFLELKKKQKVRLM
                     IAPRRPERFQEVAKLLDESGLNWVKRTSTPQSSDSAAEAILLDTIGELPSVYSLAKVV
                     FVGGSIVDHGGHNVLEPAARGTCVVTGHYTHNFQAIVHLLNEADAIVQLPPLDPRKAS
                     NCLTHELEALLSDDKRRTELTIRAREIVQNNQGATERTIGFLRPLLTQSPIKTAPRST
                     LLATHTSGS"
     gene            682..1704
                     /gene="lpxK"
                     /locus_tag="VIJ87_20295"
     CDS             682..1704
                     /gene="lpxK"
                     /locus_tag="VIJ87_20295"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: protein motif:HMM:NF014645.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009029 - tetraacyldisaccharide 4'-kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HEY5446752.1"
                     /translation="MRSIILPPLGVLYGAITRGHAVLYERGAFRPAKLERPVISIGNI
                     TAGGTGKTPLVEWVARTLAESEKQVCILTRGYGRENPKRRVLVSDGTTVFSTSREAGD
                     EPYLLASNLRGVAAVISDADRFAAGQGAIKHLKSDCFVLDDGFQHFRLARDLNVVTID
                     ATDPWGNGQMLPYGRLREPLTGLKRADCFVLTRCEQAENVDGVHSELSRLSGDRPIFH
                     SRMIVKRIKNLDESNTTAPSGLVSAFCGIGNPRSFFAQLQVEGLEPLTQTSFRDHHIY
                     TQSDVDKLVATAKQAGATSLITTAKDAVKLRSLSFSLPCYLLEIELRIENAEGFRGLL
                     MDATRS"
     gene            complement(1701..>2085)
                     /locus_tag="VIJ87_20300"
     CDS             complement(1701..>2085)
                     /locus_tag="VIJ87_20300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446753.1"
                     /translation="TPSANSNTDSQPTLVADPNSQPVKPGQPPTGKGEEGIPAGGVIT
                     SPANANVNTNVNANAEVSPSPITEVSPANANANENSNSNRKAPPLPEPSKAVTPDNVP
                     PPSPPGSKSPTVKPSPSPEASPDGR"
BASE COUNT          503 a          516 c          558 g          508 t
ORIGIN      
        1 agcactgaaa aaccgttttg gattacaaga agaccagcca ctcgttcttg cggcgagcac
       61 ccatgcgcct gaagagagaa tcattctgga aagctttttg gagttgaaaa agaaacagaa
      121 ggttagactc atgatcgcgc caagacgacc tgagcgcttt caggaagttg caaaactcct
      181 tgacgaatct ggtttgaatt gggttaagag aacaagcaca ccacaatcaa gcgactccgc
      241 tgctgaagca atcctgctcg acacaattgg tgaattacct tccgtctatt ctttggctaa
      301 agtggttttt gttggtggaa gtattgttga ccacggagga cacaacgttc tcgaaccagc
      361 cgctcgcgga acctgtgttg tgacgggtca ctacacacat aacttccagg caatcgttca
      421 cctgctcaac gaggcagacg cgatagttca acttcctcct ttggatccgc gcaaggcttc
      481 gaactgtttg acacatgagt tggaagcgct cttgagtgat gataagcgtc gaacagaatt
      541 gacgattaga gccagggaga tcgtgcaaaa caaccagggc gccactgaac gaactatcgg
      601 gtttctcagg ccactactca cccaatcgcc aattaagact gctccccggt ctacgctgct
      661 cgccacccat acgtccggct catgagatca ataatcctgc caccgcttgg ggttttgtat
      721 ggtgcgatca cccgcggaca tgcggtgtta tatgaacgcg gtgcgtttcg gcctgcaaaa
      781 ctggagcgac cagtaataag catcggcaac atcacagcgg gaggtactgg caaaacgccc
      841 ctagttgaat gggtagccag gacgctagcc gagtcagaaa aacaagtttg cattctgacg
      901 cgaggctatg gccgagaaaa tcccaaacgg cgggtactcg tgtcggacgg tacaaccgtc
      961 ttttcaactt cccgtgaagc tggagatgaa ccgtatttgt tggcaagtaa cctgcgagga
     1021 gttgcagcgg taatcagcga tgcagaccgg ttcgctgccg ggcaaggagc tatcaagcat
     1081 ttgaaaagtg attgctttgt gctcgacgac gggttccaac actttagact cgcccgagat
     1141 ctaaacgtcg ttaccattga cgcgacagat ccatggggta acggtcagat gcttccctat
     1201 ggtcgattgc gcgagccttt gactggactt aaaagagcgg attgcttcgt tttgaccagg
     1261 tgtgaacaag ctgagaacgt tgacggtgtt cattcggaac tgtcgagact ctccggagat
     1321 cgaccgatct ttcattcgcg gatgatagtg aagcgaatca agaatcttga cgagtcaaac
     1381 acaacggcgc cgtccgggtt ggtttcggct ttttgtggaa ttggtaatcc caggtcattc
     1441 ttcgcgcaac ttcaggttga agggctcgaa ccactaactc aaacttcctt tcgagatcac
     1501 cacatctaca cacaatccga tgtcgataag ctggtggcaa cggcgaaaca agcgggcgcc
     1561 acgagcctaa tcacgacggc aaaggacgca gtcaaacttc gctcgctgtc gttttcgctc
     1621 ccttgttatt tactcgaaat tgaattgcgg atcgaaaacg ccgagggctt tcgtgggctg
     1681 ctcatggatg ctactcgaag ctagcgtccg tccggcgatg cttccggcga aggtgaaggc
     1741 ttaaccgtcg gagattttga tccgggtgga cttggtggtg gcacattgtc tggcgttaca
     1801 gccttactcg gttctggtaa ggggggagcc ttccgattgc tgtttgagtt ctcgtttgca
     1861 tttgcattag ccggactgac ttccgtaatt ggtgatggcg acacctcagc attcgcattc
     1921 acattcgtat tgacgtttgc gtttgcaggt gaagtgataa ctccaccagc aggaatgccc
     1981 tcttcccctt tgcctgttgg tggctggccc ggtttaactg gttgactatt cggatcagca
     2041 accagtgtcg gttgggaatc agtattcgag ttggcagacg gagtc
//
LOCUS       DATCGC010002138         1016 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_98082, whole genome shotgun sequence.
ACCESSION   DATCGC010002138 DATCGC010000000
VERSION     DATCGC010002138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1016)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1016)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1016
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98082"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(132..671)
                     /locus_tag="VIJ87_20305"
     CDS             complement(132..671)
                     /locus_tag="VIJ87_20305"
                     /inference="COORDINATES: protein motif:HMM:NF016041.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sterol desaturase family protein"
                     /protein_id="HEY5446754.1"
                     /translation="MNSLVPDWSSWHYWLWNLAAFPVFFLINSFVEWGAHRFVMHKPN
                     KILPYGYLHTTSHHKVFGSDETYHALNAEMLEHGIGFTWKEYVIFPVFCTMIYLPIEL
                     LTRRPIYFGAIASVFAGLILFDILHRRFHNPRDTWFQRTRYFRFLKEHHRLHHADMTK
                     NFNVNFFPIADFLLGTLKR"
     gene            complement(709..>1016)
                     /locus_tag="VIJ87_20310"
     CDS             complement(709..>1016)
                     /locus_tag="VIJ87_20310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446755.1"
                     /translation="TTRSFWNSPTERRCVSAQRTLEFERSMSADDLKAMLADIKRAIA
                     DDEFSPTKFEREFLETVTDLINIELKLTDTQDEIFEEIWKKATGQSDDNDPSEDDFM"
BASE COUNT          235 a          254 c          293 g          234 t
ORIGIN      
        1 ttcgatccca cgcagagttc accgcccttc aggtaatgcc gggcatactc gccgtcggct
       61 ggaggaacgt tctggccgca gcgaggacag cggaccttta acgagggggc gaagtctttc
      121 ctcggcataa atcagcgctt cagcgtccca agcagaaagt ccgcgatcgg aaagaagttc
      181 acgttgaaat tcttcgtcat gtcggcgtga tgaaggcggt gatgctcctt cagaaacctg
      241 aagtagcgcg tcctctggaa ccatgtgtcg cgcggattgt gaaatcttcg atgaaggata
      301 tcgaagagga tcaggccagc gaatacagat gcgatggccc cgaaatagat gggacgtcgg
      361 gtcagcaact cgatagggag gtaaatcatc gtgcagaaga ccgggaagat gacgtactcc
      421 ttccaggtga acccgattcc gtgctccagc atctcggcgt tcagcgcgtg ataggtttcg
      481 tcagacccaa agaccttgtg gtgcgaggtc gtatgcagat atccgtaggg gaggatcttg
      541 ttgggcttgt gcatcacaaa gcgatgagct ccccactcga cgaaagaatt gatcaggaag
      601 aatactggga aagcggccag attccagagc cagtaatgcc acgacgacca gtcggggact
      661 aaggagttca tggttttacc tacccctctc gaataaagcc aaaacggctt acatgaaatc
      721 gtcttcgctt ggatcgttat cgtcgctctg acctgtggcc ttcttccaga tctcttcgaa
      781 gatctcgtcc tgcgtatccg taagcttgag ctcgatattg atcagatctg tgacggtctc
      841 gaggaattct ctctcgaatt tggtcgggct gaactcgtca tccgcgatcg ctcgcttgat
      901 gtcggccagc atagccttca ggtcgtcggc gctcatggat cgttcgaatt ctagtgtgcg
      961 ttgggcggag acgcaacgcc gttcggtggg ggagttccaa aaagatcgag ttgtga
//
LOCUS       DATCGC010002139         1449 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_332307, whole genome shotgun sequence.
ACCESSION   DATCGC010002139 DATCGC010000000
VERSION     DATCGC010002139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1449)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1449)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1449
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_332307"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            62..>1449
                     /locus_tag="VIJ87_20315"
     CDS             62..>1449
                     /locus_tag="VIJ87_20315"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY5446756.1"
                     /translation="MIGTTVELHGLRKDGQEFSLEFSVTTWQTGQGRFYGGIIRDITK
                     RKQAEEALRKAHAELEARVQERTAELSDANAQLMREIHAHQQAEEQKEKLLHALSERI
                     KELTLLHQMARFLQNEEKPMEMLLQEITAILPRAWKHEEVAAARIMFDGEEYMTPNFT
                     PTPWKLREDFTTPEGKHGGLEIVYLEERPDEVEGPFLAEERSLINSLAEMLLSYLERK
                     EAETSVAQVTRELVERNEELWRLQKEKGQVEPLAALGRVTGMIAHELGTPLNTILGHS
                     QFLGEEELTEGGRRRLKTIQKQIQRMVNTVQYYLSRTRISPPARSQVNVNELVLETLE
                     LLKPVFEQHELEVNTTLAESLAPLTANRESLQRVLINLLNNAVDALKDGGTVTITTRA
                     AAGSPETSKEGVVIEVTDTGAGIPPEMLPEVFDLFLTTKESGKGTGLGLAVCQEIVKI
                     HGGTIQITSKLG"
BASE COUNT          395 a          352 c          419 g          283 t
ORIGIN      
        1 ccgataccaa gatgcgcatt gcaaggggct agagcgactg agcacaacag gcgaatccaa
       61 gatgattggg acgacagtcg aactccacgg attgaggaaa gacggccagg agttttccct
      121 ggagttttct gtcaccacat ggcagaccgg gcaaggcaga ttctatggcg gcattattcg
      181 tgacattacc aaaaggaagc aggcagagga ggcgctacgg aaagctcatg ccgaattgga
      241 agcgcgtgtg caggagcgca cagcagaact ctccgacgct aatgcgcagc tgatgcgaga
      301 aatccatgct caccaacagg cggaagagca aaaagagaaa cttctccatg ctctcagcga
      361 gcggatcaaa gagttgaccc ttttacacca gatggcacgt tttcttcaaa acgaggagaa
      421 gccaatggag atgttgttgc aagagatcac cgcaattctc cctcgagcct ggaagcatga
      481 ggaagttgcc gctgctcgca ttatgtttga tggcgaggag tatatgacgc cgaactttac
      541 ccctacccct tggaaactac gtgaggattt cacaacaccc gaaggcaaac atggcgggtt
      601 ggaaattgtg tatttagagg agaggcctga tgaagtggaa ggcccgtttc ttgccgaaga
      661 aagaagtctt attaactctc tcgctgaaat gttgttgtcg tacctcgagc gtaaagaggc
      721 ggagacaagc gtggcgcaag taacccggga gttggtcgag cgcaacgagg aactctggcg
      781 tctccagaaa gaaaagggac aggtggagcc tctggccgca ctgggacgcg taaccggaat
      841 gattgcccac gaactgggga ccccattaaa caccatcctc ggccacagcc agttcctggg
      901 tgaggaagag ctgacggaag gcggccgccg tcgtctaaaa accatccaga aacagataca
      961 gcgcatggtg aacactgttc aatactatct ctctcgcacg aggatctcac cgcctgcgcg
     1021 ctctcaggtc aacgtaaatg aattggtctt agagaccctg gagctgctca agcctgtttt
     1081 tgaacaacat gagttagagg tgaataccac tctggcagaa tctttggctc cgttaacggc
     1141 aaaccgtgag tcgctacagc gcgtattgat caacctgctc aataatgcgg ttgacgccct
     1201 gaaagacgga ggaacggtga caattaccac gagagcggcg gccggatctc cagaaacgag
     1261 taaggaagga gttgtgatcg aggtcacgga caccggggcg ggcattccac ccgagatgct
     1321 gcccgaggtt tttgacctat tcctgacgac caaggagtca gggaaaggga ctggcctggg
     1381 gttggcagtc tgccaagaga ttgtcaagat tcatggaggt actatccaga tcacgagcaa
     1441 gttgggcga
//
LOCUS       DATCGC010002140         1390 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_395110, whole genome shotgun sequence.
ACCESSION   DATCGC010002140 DATCGC010000000
VERSION     DATCGC010002140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1390)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1390)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1390
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_395110"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1242)
                     /locus_tag="VIJ87_20320"
     CDS             complement(<1..1242)
                     /locus_tag="VIJ87_20320"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5446757.1"
                     /translation="MSNRKLLLADDSVTIQKVINLTFADEGIEVMTVGDGDTAMERFQ
                     EFRPDIVLADVNMPGLNGYRICENLRQHEESAGIPVILLVGSFESFDENEARRVGANA
                     WMTKPFQSIRQLVNKVTDLLDQPAPVNGVNHAETPVETPLENISYETRPLVMPSSPTS
                     DGEDIDALYRQSMTETVPLPQSYMSEHAFGDTSMDDDMIETSYVASGAPESSGFDAQP
                     SIETDVAQVSETIQPSGDFDFGSLSEPVPVEDRREVTEFDLIPANESSEFTDTMQSIS
                     QETVEMNFSEPLMESNVIDFRPPDGEHRPEYVEQVPAGEPAVENEWQKGLNFESPTEP
                     EPEIIAESMDAATVPQHSFDDTEPLEIPPDASRPSEDGLEEEIIALSGSGLPLSSQQK
                     EQQVQTADDISPEFVDAVARKV"
BASE COUNT          317 a          359 c          366 g          348 t
ORIGIN      
        1 cacttttctg gcaacagcgt cgacgaactc tggcgagata tcatccgcgg tttgaacttg
       61 ctgctccttc tgttgcgacg acaacggcag acctgaaccg ctgagagcaa tgatctcttc
      121 ctcgagccca tcctcggacg ggcgacttgc atcgggaggg atctccaacg gctccgtatc
      181 gtcaaacgaa tgctgcggaa cggttgccgc gtccattgat tccgcgatga tctctggctc
      241 tggttcggtt ggagactcga agttgagtcc tttctgccac tcattctcga ccgcaggctc
      301 tcctgcgggc acctgttcta catattcggg ccgatgctcc ccatcaggag ggcgaaaatc
      361 gataacattg ctctccataa gaggttcgct gaaattcatc tcaaccgttt cctgcgagat
      421 gctctgcatc gtatccgtaa actcagagga ttcgttcgct ggaatcaggt cgaactcggt
      481 cacttcgcgc cggtcctcaa cgggaaccgg ttccgaaagt gagccaaagt caaaatcgcc
      541 ggaaggttga atcgtctcac tcacctgagc cacatcggtt tctattgacg gctgagcatc
      601 aaatccggat gattccgggg ctccagatgc gacatagctt gtttcgatca tgtcgtcatc
      661 catgcttgta tcaccaaagg cgtgctcgga catgtatgat tgcggaagcg gaaccgtttc
      721 tgtcatgctc tgccgataga gagcatcaat atcctcgcca tccgaggtcg ggctcgaggg
      781 catcactaga ggacgagtct cgtacgagat attttcaagc ggagtctcaa ccggggtttc
      841 tgcatggtta actccgttga caggagcagg ttgatcgaga agatcggtga ccttgttcac
      901 gagttggcgg atagattgga atggtttggt catccaggcg ttggctccaa cccgacgagc
      961 ttcattctca tcgaaagatt cgaatgagcc aacaagaaga atgacaggta tgcccgcaga
     1021 ttcttcatgc tgccggaggt tttcgcaaat acgatagccg ttcaatcccg gcatattcac
     1081 atctgcgaga acaatgtcag ggcggaattc ctgaaaacgc tccatcgccg tgtcaccgtc
     1141 accgacggtc attacctcga tcccctcgtc agcaaacgtc aggttgataa ctttctgaat
     1201 ggtgacggaa tcgtcagcaa gaagtaactt tctattggac acgggtggac aggctccttt
     1261 taaaggtggt gtgtaagctc ggacgcgaac tcccgtttga agctaccatt ttgtttagcg
     1321 agaggtcaag aaaagttggt ttttatataa gaattggccg ggagatcagc cgtggcggac
     1381 gttgttttct
//
LOCUS       DATCGC010002141         1051 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_198320, whole genome shotgun sequence.
ACCESSION   DATCGC010002141 DATCGC010000000
VERSION     DATCGC010002141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1051)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1051)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1051
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_198320"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..207
                     /locus_tag="VIJ87_20325"
     CDS             <1..207
                     /locus_tag="VIJ87_20325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446758.1"
                     /translation="PGQKAAEEVECEGKRTAVSPETCLEDPGKNDREDNDHYSRGNYR
                     PRPTTQRTLVTVGKVSANKRSDKA"
     gene            complement(296..>1051)
                     /locus_tag="VIJ87_20330"
     CDS             complement(296..>1051)
                     /locus_tag="VIJ87_20330"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY5446759.1"
                     /translation="FVPTAIVTDAQVIQNYYETRWGKKSEMIAYGAESARRVAPQPLE
                     HYGLAPNQYILYVSRLEPENNAHLVIKAYENVQTDLPLVIVGGAPYAKEYIASLKSTT
                     DKRIKFVGFVFGEDYRALQQNAYCYVHATEVGGTHPALIEAMGAGNCALTLATPENLE
                     VIGEAGIVYDSVEDLTLKLQRVIVDPSIIGEYRHRAMSRVMQLYNWEQITDRYEVLLA
                     RLTGAETIEATELRPEAVELTAVEEPKFKQSRA"
BASE COUNT          246 a          260 c          285 g          260 t
ORIGIN      
        1 ccagggcaga aggccgcaga agaggtagag tgcgaaggta agcggactgc tgtgagtccc
       61 gaaacgtgcc tggaagatcc cggaaaaaat gaccgtgaag ataacgatca ttacagccgg
      121 ggtaattacc gcccacgccc aaccacccag cgaacccttg taacggttgg aaaggtctct
      181 gcgaacaagc gatctgataa ggcctgaatg ctcacgtatg agagctattc ccggtctcca
      241 aattggagga cgcgaggagg tatcaattga gacctgggac atttactcct gaagtctacg
      301 cgcggctttg tttgaacttg ggttcttcga ctgctgtgag ttcgacagct tcaggacgaa
      361 gttcggtggc ttcaatggtc tccgctcccg ttagcctggc aagcaagact tcgtacctgt
      421 cggtgatctg ttcccaatta taaagctgca taactcgtga catggcgcga tggcgatact
      481 caccgatgat ggatggatct acgattacac gctgaagctt gagcgtgagg tcctcaacgg
      541 aatcatagac tatgcccgct tcgccaatga cttcgaggtt ttcaggtgtt gcgagagtga
      601 gcgcgcagtt accggcaccc atcgcttcaa ttaatgcagg atgcgttcct cctacttcag
      661 tggcgtgcac ataacagtac gcattctgct ggagcgcccg ataatcttcg ccaaaaacga
      721 agcccacgaa ttttattcgt ttgtctgttg tgctcttgag actcgcgatg tattccttcg
      781 cataaggtgc tccgcctaca atcacaagtg gaaggtcggt ttgcacgttt tcgtaggcct
      841 ttattaccag gtgagcattg ttctctggtt caagtcgact gacatagaga atgtattggt
      901 ttggcgcgag gccgtagtgc tcgagcggtt ggggcgcaac gcgtcgagcc gattctgcgc
      961 cgtaggcaat catttcagat ttcttgcccc agcgcgtctc gtagtaattc tgaattacct
     1021 gagcgtcagt aactatggca gtcggaacaa a
//
LOCUS       DATCGC010002142         1024 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_427842, whole genome shotgun sequence.
ACCESSION   DATCGC010002142 DATCGC010000000
VERSION     DATCGC010002142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1024)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1024)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1024
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_427842"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            201..704
                     /locus_tag="VIJ87_20335"
     CDS             201..704
                     /locus_tag="VIJ87_20335"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY5446760.1"
                     /translation="MSNRSFVLARRLELGALALEAFASSLTDAEWQTRLPGDGRKIGV
                     IVHHVASVYPIEIKLAETLANGQPIEGVTCDVVNQMNAQHAKDNDAVGKEATLELLRR
                     NSAAAATAIRLFSDEQLDEAAAVSLNADAPLTCQFMLEDHAVRHSYHHLARIRAALKK
                     PTLALAG"
     gene            752..>1024
                     /locus_tag="VIJ87_20340"
     CDS             752..>1024
                     /locus_tag="VIJ87_20340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446761.1"
                     /translation="MKKQILQLSGRIGLMLVIAMTIVNSSAKGQSLEYGMKVRIPFDF
                     KVDKQEFPAGDYSFRRASQTSGDLVVHIESTDGKANGFPVTFPVIGT"
BASE COUNT          266 a          250 c          282 g          226 t
ORIGIN      
        1 cggtgcccca agctaaagct tggggagaat gagaagcgga gttgtgactc gcgctcgtca
       61 gctgtggatg gtttctagcc tctttctccc atcgaaacat taccgcagct taaccaaaag
      121 tttatgactc gatccgggtc agaccgtaac ctccagcctg aggaaacatg actcaggaaa
      181 acaactttag aggagagatt atgagtaatc gaagttttgt acttgctcgt cgactggaat
      241 tgggcgcgct cgcccttgaa gcgtttgcca gttcgctcac agacgctgag tggcaaaccc
      301 gtctgccagg cgacggtcga aaaatcggcg tgatcgttca tcacgtagcg agcgtctacc
      361 caatcgagat caagttggcc gaaacactgg cgaatggcca gcctatcgaa ggcgttacct
      421 gcgatgtggt caaccagatg aatgctcaac atgcaaaaga caacgacgcg gtaggcaaag
      481 aggccacatt ggaactcttg cgtcggaaca gtgcagcggc cgccacggcc atccggttgt
      541 ttagtgatga gcagttagac gaggcagccg ctgtttcgct taacgcggat gcgccgctta
      601 cgtgtcagtt catgctcgag gaccacgctg ttcgtcacag ctaccaccac ctcgctcgca
      661 ttcgagctgc tttgaagaaa ccaaccctgg ccctcgcagg ttaactgaaa cttgcgaaca
      721 acgagttatt gattgaagaa agaggaaagt tatgaagaaa cagattctgc aactatcagg
      781 gaggatagga ttgatgttgg tcatcgcgat gaccattgtg aactcgtcag cgaaaggtca
      841 gtccctggag tatgggatga aggttcgaat tccattcgat ttcaaggtcg acaagcaaga
      901 gtttccagca ggggactatt cgttcagacg agctagccaa accagtggcg acctggtggt
      961 gcacattgag agtaccgatg gaaaagcgaa tggctttccg gtcacttttc cagtgatcgg
     1021 gaca
//
LOCUS       DATCGC010002143         1207 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_395137, whole genome shotgun sequence.
ACCESSION   DATCGC010002143 DATCGC010000000
VERSION     DATCGC010002143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1207)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1207)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1207
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_395137"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..324
                     /locus_tag="VIJ87_20345"
     CDS             <1..324
                     /locus_tag="VIJ87_20345"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5446762.1"
                     /translation="VVTANDMSTAIRRATFYKPDIAILDLQMPPDNDTPKVGLQLLEF
                     IKGHLPNSRVLIMSSNAELDVQKACHEAGAEEFFDKPFEIQEMLSSICRLAPVHRLEL
                     IAQIL"
     gene            complement(455..>1207)
                     /locus_tag="VIJ87_20350"
     CDS             complement(455..>1207)
                     /locus_tag="VIJ87_20350"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY5446763.1"
                     /translation="VFFTTAEHQPSVARMINDSYAELIAAHPTRFKGFASIPMDAPDA
                     ALVELHRAVHELKLNGVVLLSNIGGKPLTSPEYRQFFAEANRMKLCIFLHPMLPANAD
                     SFREYVLGPIIGFPFDTSLAVARMCYDGMFEDFPDIRWIIGHLGGAIPYLMERMDNGF
                     RDFADCRVKIDKLPSVYLKRLYYDTVSFSPHTLTMVRNMVGADHMVMGSDYPHLLGSI
                     DRAVTSIEGLEIAGAEKAQIFEGTAMSILNNV"
BASE COUNT          314 a          314 c          302 g          277 t
ORIGIN      
        1 gtggtcacgg caaatgacat gagtactgcc attcgccgag caactttcta caagccagac
       61 attgcgattc ttgacctgca aatgcctccg gacaatgaca cgccgaaggt tggactgcag
      121 ctcctcgaat tcatcaaggg tcatctcccg aattcacgag ttttgatcat gagttcgaac
      181 gccgagctgg atgtccaaaa ggcctgtcat gaggctggcg cagaagagtt cttcgacaag
      241 ccttttgaga ttcaggagat gttgtcgagt atttgcagat tggcgccggt tcacaggttg
      301 gagcttattg ctcaaattct ttgaagcatt cgatcgctac ccacaaagcg atcgtttcac
      361 acaccagaga tgattcccac ttcatcggct ggtgtatcaa caggcttcag tttcggtccc
      421 tcccggaact gaagccttat ttttttaaca ggcttcacac gttgttgagt atcgacatgg
      481 cagtaccctc gaagatctga gccttctccg cgccagcgat ctccaagccc tcaatcgaag
      541 tcaccgcacg atcgatcgaa cccaacaagt gcggataatc acttcccatt accatgtgat
      601 cggcgccaac catattgcga accatagtga gtgtatgtgg gctgaaggag acggtgtcgt
      661 agtacaaacg tttcaaatac acgctcggta gcttgtcgat ctttacgcgg cagtccgcaa
      721 aatcgcgaaa gccgttgtcc atccgctcca tcaggtacgg tatggcccca cccaggtggc
      781 cgatgatcca acggatgtcg ggaaagtctt caaacattcc gtcgtaacac atacgagcaa
      841 ccgcaaggct ggtatcgaat gggaatccga taatcggacc cagaacgtat tcgcgaaaag
      901 agtcggcatt agcaggcaac attggatgca gaaagatgca gagcttcatc cgattcgcct
      961 cagcgaagaa ctgtcgatac tccggagacg ttaatggttt cccgccaatg ttgctgagta
     1021 gaacgacgcc attaagtttc aactcatgaa ctgcccgatg aagctcaact aacgcagcgt
     1081 caggcgcatc catcgggatc gaagcgaaac ctttgaagcg cgtcggatgg gcggcgataa
     1141 gttccgcgta agagtcgttg atcattcgcg caaccgaagg ctggtgttca gcagtagtaa
     1201 aaaagac
//
LOCUS       DATCGC010002144         1604 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_298036, whole genome shotgun sequence.
ACCESSION   DATCGC010002144 DATCGC010000000
VERSION     DATCGC010002144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1604
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298036"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            149..1468
                     /locus_tag="VIJ87_20355"
     CDS             149..1468
                     /locus_tag="VIJ87_20355"
                     /inference="COORDINATES: protein motif:HMM:NF019606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-3-phosphate synthase"
                     /protein_id="HEY5446764.1"
                     /translation="MPVATKTEIKPAEGKLGVLLVGLGAVSTTFIAGVEAIKKGFAQP
                     IGSLTQMGAIRLGKRTDNRVPLVKDFVPLAELKDLVFGAWDIFPESAYEAALNAGVLE
                     KELLGQLKVPLRKIKPMKAVFDQTYVKRLSGANVKTGKNKFDLAQQLIAEIAEWKKKN
                     KCSRLVMIWAASTEIFLKPHAVHKTLESFEKAMRENHKAIAPSMIYAYAALKSGIPFA
                     NGAPNLTVDIPAMRALADKNKLAICGKDFKTGQTLMKTIIAPGLKSRMLGLHGWYSTN
                     ILGNRDGEVLDDPDSFKTKEESKLSVLEYILQPDVYPALYKDFSHVVRINYYPPRGDN
                     KEGWDNIDIFGWLGYPMQIKIDFLCRDSILAAPIVLDLALFLDLAQRAGMKGVQEWLS
                     FYFKSPQTAPGLYPEHDIFIQLMKLKNTLRHLRGEDLITHLGLEYYD"
BASE COUNT          428 a          400 c          383 g          393 t
ORIGIN      
        1 aacaacccca agagagttcc gcaaagcact tattgcgcgc tagaaacgat ctcgaccgca
       61 attgatcgcc attattgagc aagatcgtgc gcttcgaatc agtggacgac ttgtatcatc
      121 cctccatatt ttcaaaggag agttatcaat gcccgtcgct accaaaacag aaattaaacc
      181 ggccgaagga aagttaggtg tcttgctcgt cggtctcgga gcagtcagca ccacatttat
      241 cgccggtgtc gaagccatca agaaaggctt tgcgcaaccg atcggtagtc ttacccagat
      301 gggtgcgatt cgactcggca aacgaactga caatcgggtg ccactagtaa aagactttgt
      361 tccactcgcc gagctcaaag atctggtttt cggggcatgg gacattttcc cggagtcggc
      421 ctacgaagca gcgttgaatg ctggtgttct tgagaaggaa ctgcttggcc aactgaaagt
      481 accgctccgc aagatcaagc caatgaaggc ggtcttcgac caaacttacg ttaagcgttt
      541 gagcggtgcg aacgtcaaaa ctggcaagaa caaatttgac cttgctcagc aactcatcgc
      601 tgagattgcc gaatggaaga agaaaaacaa atgctcgcgc ttagtgatga tctgggcagc
      661 ttctacggaa atctttctga agcctcacgc cgttcacaaa acgcttgagt cgttcgaaaa
      721 ggctatgcgc gagaaccaca aggcgatcgc gccttctatg atttatgcct atgcggctct
      781 taagtcagga attcctttcg ccaatggtgc gccaaatcta accgttgata ttccagcaat
      841 gcgggcgctt gccgacaaga acaagcttgc gatctgcggc aaggatttca aaaccggtca
      901 gactttaatg aagacaatca tcgccccggg attgaagtcg cgcatgcttg gtcttcacgg
      961 ctggtactcc acgaatattc tcggcaatcg cgacggcgaa gtccttgatg atcccgattc
     1021 attcaagact aaagaagagt caaaactctc ggtactcgag tacattctgc agcctgatgt
     1081 ctatccggct ctgtacaaag acttctcgca cgtcgtgcga atcaactact acccaccgcg
     1141 cggtgataac aaagaaggct gggacaatat cgacatcttt ggatggctgg gctatccaat
     1201 gcagatcaag atcgactttc tctgtcgcga ttcaattctc gctgccccca tcgtcttaga
     1261 ccttgcgctc tttttagacc ttgctcagcg agctggaatg aaaggcgtcc aggagtggtt
     1321 gtcgttctac ttcaaatcgc cgcaaaccgc gccagggttg tatccggaac acgacatttt
     1381 cattcagttg atgaaactga agaacactct gcgccactta cgcggtgaag atctgattac
     1441 acatttgggg ttggaatact acgattaacc aatctgcaaa ttacggaaaa gcgtcgggta
     1501 acttttttgg gagagccttg tttgaaaagg tgtaccaaat tgcccgacac attttttgcg
     1561 caaaatcgag ctgcaactaa ttgtcagtag tttttgacac ttta
//
LOCUS       DATCGC010002145         1565 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_231363, whole genome shotgun sequence.
ACCESSION   DATCGC010002145 DATCGC010000000
VERSION     DATCGC010002145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1565
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231363"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(23..1441)
                     /locus_tag="VIJ87_20360"
     CDS             complement(23..1441)
                     /locus_tag="VIJ87_20360"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEY5446765.1"
                     /translation="MRNWFVVLATLIAMVTSNTFNAAAQNRQERVDLLVLGGTIVTMD
                     SARQVIDDGGIAVRAGRIVAIGSRAQIEARYTSRQRVNATGKLITPGLINGHTHIPMV
                     LFRGLADDLDLQEWLTKYIFPAEAKNVTEDFVRVGTRLGLAEMIRGGTTTYCDMYYFE
                     DAIAEETSKAGVRGVLGETVIDFPVADNKTNAEAMTYVEKFVSRWKGNDLIVPAIAPH
                     APYTVSEDHLKAVRAFSDRTGAAIVTHISETKRELDDSIKAKGASPVAYLERIGFLSE
                     RVIAAHMVWPQGSDIEILKKRRVGVVHNPQSNMKLASGVAPVPKMMEEGVLLGLGTDG
                     AASNNDLNMWEEMDTVAKLHKVFSGDPKVISAQQAFELATIRGAQALHLEKEIGSLEV
                     GKRADLLLIERDSLNQIPLYNIYSDLVYATKASDVEGVIINGRVVMQNRRLLTLDEVS
                     IKRDARTYRERIIKSLNSTSTP"
BASE COUNT          359 a          432 c          373 g          401 t
ORIGIN      
        1 attgggttga tctaagtcac ggtcatggag tcgacgtgct gttgagactt ttgataatcc
       61 tctcgcggta ggtcctcgcg tcgcgtttga tcgacacctc atcgagcgtc agcaaacgac
      121 ggttctgcat cacaactcgt ccattaataa ttacgccctc aacatcagaa gccttcgtcg
      181 cgtaaaccaa atcggaatag atgttataga gcggaatctg attgagtgaa tcccgttcga
      241 tcagcagtag gtcagcccgt ttcccgacct caagtgagcc aatctctttt tcgaggtgaa
      301 gcgcctgtgc cccacgaatg gttgcgagtt caaatgcttg ctgcgctgag ataactttcg
      361 gatcaccgga gaagactttg tgcaactttg cgacagtgtc catctcttcc cacatgttca
      421 gatcgttgtt tgacgctgcg ccatccgtac ccagaccaag cagtacacct tcttccatca
      481 tcttagggac aggggcaacg cccgacgcga gcttcatgtt ggattgagga ttatgaacaa
      541 cgccaactcg ccgcttctta aggatctcta tatcactccc ctgtggccaa accatatgcg
      601 cagcgatcac tcgttcactc aagaacccaa tgcgctcgag gtaagctacc ggactcgcac
      661 ctttcgcttt gatactgtcg tcgagctccc gctttgtctc tgaaatgtgt gtgacaatgg
      721 ctgcgccagt gcgatccgaa aacgcgcgca ctgcctttaa gtggtcctct gaaactgtgt
      781 atggcgcatg tggcgcaatc gccgggacga taagatcatt tcctttccag cgactcacga
      841 acttttccac ataagtcatt gcctcggcat ttgtcttgtt atcagcgacg ggaaaatcga
      901 taaccgtttc acccaacacg ccacgcacgc ctgccttcga agtttcttcg gcgatggcgt
      961 cttcgaagta gtacatgtcg cagtaagtcg tcgtgcctcc gcgaatcatt tctgccagac
     1021 cgagtcgagt ccccacgcgc acaaagtctt ctgtcacgtt cttggcttcc gctggaaaga
     1081 tatacttcgt gagccattcc tgtaagtcga gatcatctgc gagccctcga aacaggacca
     1141 tcggaatatg cgtgtgacca ttaatcaaac cgggagtgat cagttttcca gttgcgttaa
     1201 ctctttgtcg cgacgtgtag cgcgcttcaa tctgcgctcg cgatccaata gcaacgattc
     1261 gtccggcacg aacagcgatg ccaccatcgt caatcacctg acgtgcagaa tccatagtga
     1321 cgatcgtgcc acccaacaca agtagatcaa cacgctcttg ccggttttgc gcggcggcgt
     1381 tgaaagtatt acttgtaacc atggcgatta gagtggcgag aactacaaac caatttcgca
     1441 tagtagtgtt cggtaaactg tcatgaagtc agtaccacaa cgtggtagcg tgtggctccg
     1501 ctgtcaatcc cgatgttcat gtcttggttg agccacacgg taccgcgttg tgttgctgac
     1561 ttcat
//
LOCUS       DATCGC010002146         2758 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_33194, whole genome shotgun sequence.
ACCESSION   DATCGC010002146 DATCGC010000000
VERSION     DATCGC010002146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2758
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33194"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            121..966
                     /locus_tag="VIJ87_20365"
     CDS             121..966
                     /locus_tag="VIJ87_20365"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: protein motif:HMM:TIGR00571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009007 - site-specific
                     DNA-methyltransferase (adenine-specific) activity
                     [Evidence IEA];
                     GO_process: GO:0006306 - DNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Dam family site-specific
                     DNA-(adenine-N6)-methyltransferase"
                     /protein_id="HEY5446766.1"
                     /translation="MNAKTDENLRLRPPLKWAGGKRWLVPHLIMLWKPHSSRRYVEPF
                     CGGLAVALGLAPQNALLNDINPQLINFYRQVQQGLELKIEMRNEQTLFYQQRERFNEL
                     MHASKTNGNGNGTTRRVRSSQSLEAAQLFYYLNRTCFNGLCRFNQSGEFNVPFGTYKS
                     ITYATDFFAYKEVFRNWAFSNSDFESIPFAADDFIYADPPYDVEFTTYSAGGFSWEDQ
                     VRTAELLSKHKGPVVISNQATKRIVSLYKRLGFKLSYLDAPRRISCTGDRSSAREVLA
                     TKNIQ"
     gene            963..2378
                     /locus_tag="VIJ87_20370"
     CDS             963..2378
                     /locus_tag="VIJ87_20370"
                     /EC_number="3.5.3.13"
                     /inference="COORDINATES: protein motif:HMM:NF006681.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formimidoylglutamate deiminase"
                     /protein_id="HEY5446767.1"
                     /translation="MTVNEQAWLPELVYVDGEFRSDVAVVSDGEGKIVRLAPTGEVER
                     QAEAYRTLVTLKNKALLPGLVNAHSHAFQRVIRGRTEYRSQNTTDSFWTWRDLMYRAA
                     NKLDVDDIYDASRMAFMEMAVSGITAVGEFHYIHHSPNGQPYGDPNLLSREVARAAND
                     VGLRIALLRVAYARAGFQKDPDPLQCRFIENAETYCHNLESLQRTLSRNSSMAWVGAA
                     PHSVRAVPLEYLKAVRDFASAQNIPIHMHVAEQPAEVSACIEEYGRSPVALLDTEGLL
                     SENFTAVHAIHVTPKAIAAMAKSGASVCACPTTERNLGDGVVPADGYFEHGVSVSLGT
                     DSQTQIDLLEDARELEYHLRLQRRERNVLVASDNAGRSALANNIFSCATVNGAKGIGF
                     DGGRLEPGALADFFTVDLNDPSIAGASRDDLLANIVFSMSRSAIKDVVVGGQQIIEGG
                     RHLDQDEITGKFNDLQARLWN"
     gene            2382..>2758
                     /locus_tag="VIJ87_20375"
     CDS             2382..>2758
                     /locus_tag="VIJ87_20375"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY5446768.1"
                     /translation="MTAQETLAQLVAINSVSFNSNLQIVEYLEHRCQEAGFRVKRFSY
                     FDENDAEKINVVALAGVDFSADTYAELALVGHTDTVPFDSNWSEATTLIERDGKLFGR
                     GSCDTKGFIAATLTAVDNLDVNK"
BASE COUNT          696 a          692 c          727 g          643 t
ORIGIN      
        1 gaaacgtgag gccagtgacg gcgttagtac taccggcgtc taagcggacc gagcacggac
       61 tatgtgggca tttgctcgca gagcagtaag cgaagaacaa agcaaggcct tcactgttac
      121 atgaatgcta agaccgacga aaatttgcgt ttaagacctc ccttaaagtg ggcgggtggc
      181 aagcgctggc tcgttccgca tctgatcatg ctctggaaac cccattccag ccggcgctat
      241 gtcgaacctt tctgcggagg gttggcggta gcgttgggac tcgcgccgca gaacgccctc
      301 cttaacgaca tcaatccaca gctgatcaat ttttaccgac aggtgcaaca aggtcttgaa
      361 ttgaaaatcg agatgcgtaa tgagcagact cttttctatc aacaacgcga gcgctttaac
      421 gagttgatgc atgcgtctaa aacaaatggc aacgggaacg gtacgactcg aagggtgcga
      481 agttcacagt ccctcgaagc agctcagctc ttctactatc tcaaccgcac ctgcttcaac
      541 ggtctttgcc ggttcaatca aagcggcgag tttaatgttc cgtttggcac ttacaaatcc
      601 atcacgtacg caactgactt cttcgcctac aaagaggttt ttcgcaactg ggcattctca
      661 aatagcgact ttgaatcgat cccgttcgcc gcagacgact tcatctatgc tgatccacct
      721 tatgatgtcg agtttactac ttatagcgcc ggagggtttt cgtgggagga tcaggtgcga
      781 acagctgagt tgctatctaa acataagggg ccggtcgtaa tttcgaatca agcaactaag
      841 agaatagtgt cactctacaa acggctggga tttaagttga gctatttgga cgcgccgcga
      901 cgaataagtt gtactggcga tcgatcgtcc gctcgggaag tactcgcgac aaaaaatata
      961 caatgacagt taatgaacaa gcatggctcc cagagctcgt ctacgttgac ggggagtttc
     1021 gatctgacgt tgccgtggtg tcggatggcg aaggcaagat tgtaaggctg gcgcccacag
     1081 gtgaagttga gcgacaagct gaagcttatc ggacattggt gacactgaag aataaggctc
     1141 tacttcccgg ccttgtaaac gctcactcgc acgcatttca gcgcgtcata cgtggacgca
     1201 ccgaatatcg atcgcaaaat acaactgata gcttttggac atggcgagac ctaatgtatc
     1261 gagccgccaa caaactcgac gtcgatgata tttacgacgc gtcgcggatg gcgttcatgg
     1321 aaatggccgt tagtggaatt actgcggtcg gagaatttca ctacatacat cactcgccca
     1381 atggtcagcc ttacggcgat cctaatctac tttcaaggga agttgcgcga gccgctaatg
     1441 atgtcggtct gcgaatcgca ctgttgcgag tagcatacgc acgcgccggt tttcaaaaag
     1501 atccggatcc gcttcaatgt cgtttcatcg agaatgctga gacgtattgc cacaacctcg
     1561 aaagtttaca aagaaccctg agccgcaatt caagcatggc gtgggttggc gccgctccgc
     1621 atagtgtaag agcggtaccg ctcgaatact tgaaagcagt tagggacttt gcttccgcgc
     1681 aaaatattcc gattcatatg cacgtcgctg aacagccggc cgaggtgtct gcctgcattg
     1741 aagagtatgg acgctctccg gttgcgttgc tcgacactga aggattgctg agtgaaaact
     1801 ttaccgctgt gcacgcgatt cacgtgactc cgaaagcaat tgcggcaatg gcaaaatccg
     1861 gcgcgtcagt gtgcgcgtgt ccaactacag aaagaaatct cggtgatggt gtagttccag
     1921 ctgacggtta tttcgagcat ggtgtttcgg tttcgttggg tacagatagt caaactcaaa
     1981 tcgacctact cgaagatgcg cgggagttgg agtaccacct gcgattacaa cgtcgggagc
     2041 gcaatgtcct tgtggcgagt gataacgccg gacgctccgc gctagcaaac aacatcttca
     2101 gctgcgcgac agtgaatggc gccaagggca tcggatttga cggaggcagg ttggagccag
     2161 gggcgcttgc ggacttcttc acggttgatc tcaacgatcc gtctattgct ggcgcatcac
     2221 gagacgatct gttggcaaac atcgtattct cgatgtcgcg ttccgccatc aaggacgtgg
     2281 tcgttggcgg acagcaaatt atcgagggtg gacgacatct cgatcaagat gagatcacag
     2341 gtaaattcaa cgatctgcaa gcacgtcttt ggaactaaaa catgaccgct caggaaacac
     2401 tcgcacaact cgtcgctatc aattcggttt catttaactc aaacctacag atagttgaat
     2461 acctcgagca tcgttgccag gaggctggat ttcgagtgaa acggttttcc tacttcgatg
     2521 agaacgatgc cgaaaagatc aatgtggtgg cactcgccgg cgtggacttc tccgctgaca
     2581 catacgcaga actcgcgctg gttggtcaca ctgacactgt gcctttcgac tcaaactgga
     2641 gcgaagcgac gacgctcatt gaacgcgacg gtaagctctt tgggcgcggc tcatgcgaca
     2701 ccaaaggctt catcgccgcc acgctcactg ccgtcgacaa tcttgacgtt aacaaatt
//
LOCUS       DATCGC010002147         1842 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_231389, whole genome shotgun sequence.
ACCESSION   DATCGC010002147 DATCGC010000000
VERSION     DATCGC010002147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1842)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1842)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1842
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231389"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            73..>1842
                     /locus_tag="VIJ87_20380"
     CDS             73..>1842
                     /locus_tag="VIJ87_20380"
                     /inference="COORDINATES: protein motif:HMM:NF014598.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009267 - cellular response to starvation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation CstA family protein"
                     /protein_id="HEY5446769.1"
                     /translation="MNALPIIIGALCVIAISYRYYSAFIAAKVLALDDKRPVPSQTMY
                     DGHNYYPTNKWVLFGHHFAAISGAGPLIGPVLAAQFGFLPGLLWLVIGVCIGGAVHDF
                     MILAGSVRRKGKSLADMARTEISPLSGLVAGIAILFIVVIALAGLGLVVVNALAESAW
                     GTFTVAFTIPLALLMGLYMYRIRPGKIAEASILGVVGLLFAVYLGGRIADSSFASAFT
                     LQRNTLIVAMAAYGFIASVLPVWMLLCPRDYLSSYLKIGTIAVLIVGVILVHPNLNMP
                     AFTPFTAGGGPVISGKLYPFVFITIACGAISGFHALISSGTTPKMIAKETDTRMIGYG
                     SMLMEGVVGIVALIAATSLFPGDYFAINTAQKTDAQKAAYVQMVDSHSGEGFNLKPQE
                     IDRLEQESGEKNLRGRTGGAVTLALGIAKIFDGIPGLSGFMKYWYHFAIMFEALFILT
                     TIDTGTRVARFLVGEFGGRFYKKLEEPNWLPGSIITSALVVTAWAAFIWSGSISTIWP
                     MFGIANQLLASVALCVATTMIVNSGKAKYSWVTILPLSFVGSTTLVAGWKSITDIFWP
                     LTQKPETSLQGYINVSLTAIIMIA"
BASE COUNT          387 a          487 c          478 g          490 t
ORIGIN      
        1 tgcgcaccat agacgacgac cgcactactg gcgaggacgt cagtagtttc ttctgagaga
       61 caaattatct agatgaacgc attacccata atcatcggcg cgctttgcgt catcgcaatc
      121 tcctaccgtt attactccgc cttcatcgcc gcgaaagttc tcgcgcttga cgacaagcga
      181 cctgtgcctt cacagacgat gtacgacgga cacaattatt acccaaccaa caagtgggtt
      241 ttgtttggtc atcacttcgc ggcgatctca ggtgctggtc cactaatcgg tcccgttctc
      301 gccgctcagt ttggttttct gccgggattg ttgtggctgg tgattggtgt ttgtatcgga
      361 ggcgctgttc acgacttcat gatcctcgca ggtagcgtgc gccgcaaagg gaagtcactg
      421 gctgacatgg cgcgcaccga gattagtccc ttgtcgggtc tggtcgcagg cattgcgatt
      481 ctctttattg ttgtcattgc actcgccggt ctcggactag tcgtggtgaa cgccctcgcc
      541 gaatccgcgt ggggaacatt caccgtggcc ttcacgattc cgctcgcact cttgatgggg
      601 ctttacatgt atcgcatccg ccccggaaag atcgcggaag cgagcatact gggtgtcgtc
      661 ggactgctct tcgctgtcta tcttggcggt cgcatcgctg actcttcttt cgcgagtgcc
      721 ttcacgttgc aacgcaacac actaattgtc gccatggcgg cttatggctt tattgcttcg
      781 gtcttgcccg tgtggatgct gctttgcccg cgcgattact tgtcgtcgta tctcaaaatc
      841 ggaacgatag ccgttctgat tgttggcgtg atcctcgtcc atcccaatct gaacatgccg
      901 gcgttcacgc cattcaccgc gggtggcgga ccagttattt cgggcaagct ttatccattt
      961 gtcttcatca cgattgcttg cggcgctatt tccggtttcc atgcgctgat atcttcgggc
     1021 acaacgccga agatgatcgc gaaagaaact gacacgcgaa tgattggcta cggtagcatg
     1081 ttgatggaag gagttgtcgg catcgttgcc ctcatcgctg cgacgtcctt gtttccgggc
     1141 gactacttcg ccatcaacac tgcacaaaaa accgacgcac aaaaagcggc ttatgttcag
     1201 atggtcgatt cacatagtgg tgaaggtttc aacctcaaac cgcaggagat cgatcgactc
     1261 gaacaagaat caggtgaaaa gaacctacgt ggacgaacag gtggcgcagt cacgctcgca
     1321 ctcggcatcg ccaagatctt tgacggcatt cccgggctca gcgggttcat gaagtactgg
     1381 tatcacttcg caatcatgtt tgaagcgttg tttattttga cgacgattga taccggcaca
     1441 cgcgtggcgc gttttcttgt cggggagttt ggtggcaggt tctacaagaa actcgaagaa
     1501 ccgaattggc tgccgggctc gataatcaca tcggcgctgg ttgttactgc ctgggctgca
     1561 ttcatctggt cgggatcaat ttcaacaatc tggccaatgt ttggaatcgc caatcagttg
     1621 ttagcttcag ttgcgttatg tgtggcgaca acgatgatcg ttaactcagg aaaagcaaaa
     1681 tactcctggg taacgattct tcccttgagc ttcgttggta gcacaacgct tgtcgcggga
     1741 tggaaatcga tcacagatat cttctggcct ctaactcaaa agcctgaaac ttcactgcag
     1801 ggctacatca atgtcagcct caccgcgatt atcatgattg ct
//
LOCUS       DATCGC010002148         1340 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_332373, whole genome shotgun sequence.
ACCESSION   DATCGC010002148 DATCGC010000000
VERSION     DATCGC010002148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1340)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1340)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1340
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_332373"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..324
                     /locus_tag="VIJ87_20385"
     CDS             <1..324
                     /locus_tag="VIJ87_20385"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEY5446770.1"
                     /translation="RFTQAQRDFLVTDYQKTIQGAFRDVSDSLVAYQKLREVRAQREL
                     LVATLRDRSRLSYLRYTGGVATLLDALDADRSLFDAEQSLAQARRDELVSVVQLYKSL
                     GGGWQ"
     gene            339..1250
                     /locus_tag="VIJ87_20390"
     CDS             339..1250
                     /locus_tag="VIJ87_20390"
                     /inference="COORDINATES: protein motif:HMM:TIGR03709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 2 family protein"
                     /protein_id="HEY5446771.1"
                     /translation="MKLKEIVKRSKSIAEPYCVTDGKNFRLKDVDPSDTQGLKSEDKP
                     RAKEALRVGVEALAGLQDMLYAQDRWSLLVIFQAMDAAGKDGAIKHVMSGINPQGCQV
                     FSFKSPSAEELDHDFMWRCLKQLPERGRIGIFNRSYYEETTAVRIHPEFLASQKLPSE
                     LVKKDIWDERFRDIRNFEKYLSCNGVVVRKFFLHVSKGEQKKRFLERLDNPAKNWKFS
                     SNDANERKYWKDYMKVYEETIRNTATDYAPWYVIPADNKWFTRLAVAAAVITTLASLN
                     LAYPTISKDKVKELESARQALMDEANQ"
BASE COUNT          350 a          313 c          352 g          325 t
ORIGIN      
        1 cgctttaccc aggctcagcg cgacttcttg gtgactgatt atcaaaaaac tatccaggga
       61 gcgtttcgcg acgtttctga ttcgttagtc gcctatcaaa aattgagaga agtgcgcgcc
      121 cagcgggagt tgcttgtcgc aactcttcga gatcgatctc ggctttccta cttgcgttac
      181 accggtggcg tggctacgtt gttggacgca cttgacgccg acagaagtct gtttgatgct
      241 gagcaaagcc tggcgcaagc tcgtcgtgac gaactagtga gcgtcgtgca actgtacaaa
      301 tccctcggtg gcggttggca ataacgcaga aagttcccat gaaactaaaa gagatcgtta
      361 agcggtcgaa atccatcgcc gaaccgtatt gcgtaactga tggaaaaaac ttccggctaa
      421 aagatgtaga tccgtcagat actcaaggtc tgaagtccga ggataagcca cgagcaaaag
      481 aagctctgcg ggtaggagtt gaggctctcg ctggtttgca ggacatgctc tatgcacagg
      541 atcgttggtc attgctggtg atctttcagg caatggacgc ggcgggtaaa gatggagcga
      601 tcaagcatgt catgtcaggt atcaacccgc agggatgcca ggtcttctct ttcaagtctc
      661 catcggcaga ggaacttgac cacgatttca tgtggcgttg tttgaagcag cttcctgagc
      721 gtggtcgcat cggtattttc aatcgcagtt actacgaaga gacgaccgca gttcgtattc
      781 atccggagtt tcttgcaagc cagaagctac cgtctgaact cgtgaaaaaa gatatctggg
      841 acgaacgctt tcgagatatt cgcaatttcg agaaatacct ttcgtgcaat ggtgtagttg
      901 tacgcaagtt cttcctgcat gtgtcgaagg gtgaacagaa gaaacgtttt ctcgaacgac
      961 ttgataaccc ggcgaagaac tggaagtttt cttcaaacga tgcgaacgaa agaaagtact
     1021 ggaaggacta catgaaggtc tacgaggaga cgatcaggaa tacagcaact gactatgcgc
     1081 catggtacgt aatacccgcc gacaacaaat ggtttacccg cctggctgtt gccgcagctg
     1141 taattacaac tctcgcttcc ctgaatctcg catatccaac aataagtaaa gacaaggtca
     1201 aggaactcga aagcgcgcgc caagctttga tggacgaggc caatcagtga gtgcagtttg
     1261 gatgtccgat atgcgtttag agcctcttgc aaaactctca tactccccaa gcttcagctt
     1321 ggggttttgg tagcgctcag
//
LOCUS       DATCGC010002149         1037 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_427918, whole genome shotgun sequence.
ACCESSION   DATCGC010002149 DATCGC010000000
VERSION     DATCGC010002149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1037)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1037)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1037
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_427918"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1037)
                     /locus_tag="VIJ87_20395"
     CDS             complement(<1..>1037)
                     /locus_tag="VIJ87_20395"
                     /inference="COORDINATES: protein motif:HMM:NF012385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sigma-54 factor interaction domain-containing
                     protein"
                     /protein_id="HEY5446772.1"
                     /translation="RALNAFRELGAKLDFSRTEEELRDLSRVTPERTQEQSALTQLLT
                     LRLAEAVASRELLLRELAAVMRQETGAQRVLIAEKGEQNHPRVVITMGCSPAESAKIA
                     TDITSLQEETARERYCKKQDAEVIQLKSSNAPPAFLYLAPRNRSALPKGVAIEPLLRV
                     VELGMDVCALRAGAHKSGSSEQSDELTGTSLMPGFIHSSPAMTQLVEEVHKIRSSDVT
                     VLVTGESGTGKELVARAIHAISSRRAKVFVPFNCTAVPKELSEGYLFGYRRGAFTGAV
                     SDSAGVIRAAAGGTLFLDEVGDLPLDVQPKLLRFLQEGEIQPLGEQRPIKVDVRIIAA
                     TNTDLEEMVAQ"
BASE COUNT          233 a          298 c          264 g          242 t
ORIGIN      
        1 cctgcgctac catctcctcc aagtcagtgt tagtcgccgc gataattcga acgtctacct
       61 taatggggcg ctgctctcct aagggctgaa tctcaccctc ctgcaagaac cgtaagagtt
      121 ttggttgcac gtcgagcggc aaatcaccaa cttcgtcgag gaagagagtc ccgcccgcgg
      181 cagcacgaat cacgccagct gagtccgaaa ctgcaccagt aaatgctccg cgtcgataac
      241 caaatagata accttcagaa agttcttttg gtacggccgt gcaattgaac ggcacgaaca
      301 cctttgctcg gcgcgaagag atcgcgtgga tcgcgcgggc cacaagctcc ttgcccgtac
      361 ctgattcgcc tgtcaccagg acggtgacgt ctgacgaacg aatcttgtgt acctcttcta
      421 cgagttgagt cattgccgga ctcgaatgga tgaagccagg catcaagctc gtaccggtga
      481 gttcgtcgga ctgttcacta ctaccagact tatgcgcacc cgctcgcagt gcacaaacat
      541 ccattcccaa ctcgacaact ctcaacaacg gttcaatggc aacgcccttc gggagagccg
      601 accggtttcg tggcgcaaga tacagaaacg ctggtggtgc gttagatgat ttcaactgga
      661 tcacttcggc atcttgcttt ttgcaataac gttcacgcgc cgtctcttcc tgaagtgatg
      721 tgatgtcagt ggcaattttt gcgctctcgg caggcgagca acccatggtt atgacaacgc
      781 ggggatgatt ctgttcgccc ttttccgcaa tcaatactct ttgtgcgccg gtctcctggc
      841 gcatcactgc cgcgagttcg cgaagtaaca attcacgaga ggcgaccgct tcagccagtc
      901 tgagtgttaa cagctgcgtg agtgccgatt gttcctgggt tctttctgga gtaacgcgtg
      961 aaagatcgcg caactcttct tccgtgcgag agaaatccaa cttcgcaccc agctcacgaa
     1021 aagcgttgag tgcccgg
//
LOCUS       DATCGC010002150         1254 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_65701, whole genome shotgun sequence.
ACCESSION   DATCGC010002150 DATCGC010000000
VERSION     DATCGC010002150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1254)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1254)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1254
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65701"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..321)
                     /locus_tag="VIJ87_20400"
     CDS             complement(<1..321)
                     /locus_tag="VIJ87_20400"
                     /inference="COORDINATES: protein motif:HMM:NF021778.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-propeller fold lactonase family protein"
                     /protein_id="HEY5446773.1"
                     /translation="MRLSRRFFVIMIAMITWSTYPASATSDGRKAIVYVGTFKRESSK
                     GIYAWRLDLNSGKMDPLGLAADTMRPVFIALHPNRRFLYAVSRPTAVDRTNMGVVLAY
                     VIDPI"
     gene            complement(372..917)
                     /locus_tag="VIJ87_20405"
     CDS             complement(372..917)
                     /locus_tag="VIJ87_20405"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024898.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY5446774.1"
                     /translation="MSSLDYTIRKARLDDKERIRDLIAESARGLSREHYSDEQIEGAI
                     QTVFGVDTDLILDGTYFVAETATQMVGCGGWSKRKTLFGGDQFASRDHTLLDPQFDPA
                     RVRAFFVHPEFARIGLGRRILTICETEANGYGFHSIELMATLPGVPFYNSCGYREISV
                     FELGMGPNLKLELVRMRKEIQ"
BASE COUNT          318 a          334 c          284 g          318 t
ORIGIN      
        1 tattggatcg atgacgtaag cgagaaccac acccatattc gttcgatcga cggccgtggg
       61 tcgactaact gcataaagaa accggcggtt tggatgcagt gcgataaaga cgggtctcat
      121 ggtgtccgcc gcaagtccca atggatccat cttgccggag ttcaaatcga gtcgccatgc
      181 gtaaatacct ttgctggatt ctcgcttaaa agtacccaca taaacgatcg ctttgcggcc
      241 atcgctagtg gcggacgctg ggtaagtaga ccaggtaatc atagcgatca taatgacaaa
      301 gaatcgacgc gaaagacgca tgttgtcctc tccgggcggc tacatatcga cgtgaatctt
      361 acgttgaact gttattggat ttctttcctc atgcgaacaa gctcaagctt aaggtttggc
      421 cccataccga gttcaaaaac agaaatctca cgataaccgc aagagttgta gaacggaact
      481 ccaggaagag ttgccattag ctcaatcgaa tggaatccgt aaccattagc ttcagtctca
      541 catattgtga gaatacggcg gccaagccct atccttgcga attccggatg cacaaagaat
      601 gcacgaaccc ttgcgggatc aaactgcgga tcaagcaggg tgtgatctct tgaagcgaat
      661 tgatctccgc cgaagagcgt tttccgtttg ctccaaccac cacagccgac catttgcgtc
      721 gcagtctcgg caacgaagta agttccatcc aggataagat ccgtatccac tccgaagacc
      781 gtttgtatcg ctccttctat ctgttcgtca gaatagtgtt cacgactcag tccgcgcgct
      841 gactccgcga tcaaatctct aatccgctct ttatcatcga gccgggcctt acgaattgta
      901 tagtccaacg atgacacttt gcggttctct ctacaattga tggaaggagc gctccattat
      961 tgttgcgccg ggacaaatca ttaaacccaa gcagccggtg ccctaatact ctaagggctg
     1021 tgaaaccact cgagcaatca aaactcacgg cgctctagat cgtatactct acctcgtcgg
     1081 atcgttcact tagattaatc gtgttctttg cgctgttgtt cgcgatacca ttacgccatg
     1141 aaaaccttca gcctggtttg ttcactcact ctgctctggt tctcttcgac attactcata
     1201 ggtgcagaac ttccccgcct cgtcattgat tccggcggcc acatgggatt cata
//
LOCUS       DATCGC010002151         2239 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_65715, whole genome shotgun sequence.
ACCESSION   DATCGC010002151 DATCGC010000000
VERSION     DATCGC010002151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2239
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65715"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..604
                     /locus_tag="VIJ87_20410"
     CDS             <1..604
                     /locus_tag="VIJ87_20410"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEY5446775.1"
                     /translation="ESYYGWLATQRLTSLASASRTSLVTEREQRVNNSIASVDQLYPA
                     PYRTAIIRAAKERQLDPRFILALIRQESVFKPFAKSPAGARGLLQLTMDAAQKYAAGA
                     GISGLQENQLYQPETSIMLGAEYIESLTKLFPQLLEPVAASYNGGEDNVARWLKRSKR
                     TDPGVFTSEIGFDETKAYVQKVMSNYRVYRQLYTADLIRR"
     gene            complement(653..1534)
                     /locus_tag="VIJ87_20415"
     CDS             complement(653..1534)
                     /locus_tag="VIJ87_20415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446776.1"
                     /translation="MTGIRLTLGAAGFLLALIFGVGVSWFVLEQNSNVANAQGPANER
                     VTTWRPQPRADFDLEVLVDGRPLAEYYARGKTYVEALKGAEYELRVRNPTSDRVAVAL
                     SVDGLNTIDARHSSAWNSSKWVIEPYQSITIGGWQMSTERARRFYFTDEGDSYGAKLG
                     QTANLGNISVVVFRERRRSISIDRPRPMYPDDRDRSEKEKAPSKPTESRGVDSAARSS
                     APVTNDDYAATGIGRSVRNDVRWVDMELDSQPAAALTIRYEYYSALLKLGVVPPRNIE
                     PYPIRRREDSRGFSPEP"
     gene            1751..>2239
                     /locus_tag="VIJ87_20420"
     CDS             1751..>2239
                     /locus_tag="VIJ87_20420"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY5446777.1"
                     /translation="MEYALTATKTEARAGSYYDRIARFYDLTFKLNGYGRSLDQYFEN
                     YPLPVSRGAKILDAGCGTGLLTFALLRAIRFPVSITALDLSSTSITAARKALYYSPGR
                     KRDVTFAQGNLLSLPIADDSLDLVVTSGALEYVPLADGISEIARVIAPGGHLLHLPIH
                     PSV"
BASE COUNT          532 a          626 c          542 g          539 t
ORIGIN      
        1 tgaatcttac tacggttggt tagcaacaca acggctcaca agtttggcgt ctgcttcaag
       61 gaccagcctc gtgacggaac gcgagcaacg agtcaacaat tcaatcgcaa gtgtcgacca
      121 gctttatcca gcaccgtatc ggacggccat aattcgcgcg gcaaaggaac gacaactaga
      181 ccctcgcttt atcctggcac tcatccggca ggaaagtgtt ttcaaaccct ttgccaaatc
      241 acctgccgga gctcgaggtc tgcttcagct gacaatggat gcagctcaga aatacgcggc
      301 gggagcgggc atctcagggt tgcaggagaa tcaactctac caaccggaaa cttcaatcat
      361 gcttggcgct gagtacatcg agtcgctaac gaaattattt ccacagttgt tggagcctgt
      421 tgccgcgtct tacaacggtg gtgaagataa tgtcgcgcgc tggttgaaga ggtcaaaacg
      481 aactgaccca ggtgtattca cttcggagat tggttttgac gaaaccaaag cctatgtcca
      541 aaaagtgatg tcgaactatc gcgtgtaccg ccaactttac accgcggatt tgattcgtcg
      601 ctgagcacgg cgcaaagata agtctccccg tctccccctc ttccctctcc tcctacggct
      661 ccggactgaa tcctcgtgaa tcttctcgac gtctaatcgg atatggttcg atattccgag
      721 gaggaacgac tccaagcttc aacagcgccg aatagtactc atatctaatt gtcagtgcag
      781 ctgccggctg tgaatccagt tccatgtcaa cccaacgcac gtcgttgcga accgaacggc
      841 caattccggt tgccgcgtaa tcgtcattag taaccggagc tgaacttctc gctgctgagt
      901 cgacaccccg agattccgta ggcttacttg gagccttctc cttctctgat ctgtcgcgat
      961 cgtccggata cataggtcgc ggacggtcaa tcgaaatgct tcgtcggcgt tccctgaaaa
     1021 ccaccactga gatatttccc aaattagcgg tctgacctaa cttggctccg taagagtccc
     1081 cttcatctgt gaagtaaaac cgacgagctc gttcggtgct catctgccag ccaccaatgg
     1141 tgatgctttg atacggttca atcacccatt tgctcgaatt ccaggccgaa gagtggcgcg
     1201 catctatcgt gttcagaccg tcgaccgaga gagcgacagc aacacgatcc gacgtcgggt
     1261 ttctaacgcg aagctcatat tcagcacctt tcaaagcctc tacataggtc ttaccacgag
     1321 cgtaatactc agccagcggt cgcccatcaa ccagaacctc gaggtcaaaa tcagctctcg
     1381 gctgtggacg ccaggtagtc acccgctcgt tagcggggcc ttgagcgttg gccacattag
     1441 agttttgttc taatacaaac catgaaactc caactccaaa aatcagcgcc agcagaaacc
     1501 cggcagcacc aagtgtcagg cgaattccag tcattgctgt ccctccaccg ttaagtccgt
     1561 caggttaaga acgggaaggt tagctctgac ttgcaaccca aatgctccga tctgcctcaa
     1621 atgcgggtcg atttaggatt ttcggttgag taaaatcggc gagaaagcta caatcgcgag
     1681 cctattctgg aaatgaccac caccaagatc gcttaataag tactaaagaa gtgagggctt
     1741 aaaagacctg atggagtatg cgcttactgc aaccaagact gaggctcgcg ccgggtccta
     1801 ctatgatcgg atcgctcgct tttacgatct gacgtttaag ctgaatggct acgggcgttc
     1861 cctcgatcag tacttcgaaa attatccgct acccgtatct cgcggtgcga agattttgga
     1921 cgcgggttgc ggcaccgggt tgttaacttt tgcgctgttg cgagctatcc gttttcccgt
     1981 atcgattacg gcgctcgatc ttagttcgac ctcgattact gcagctcgaa aagccctgta
     2041 ctacagccct ggtcggaagc gagatgtcac ttttgcacaa ggcaatctgc tttcacttcc
     2101 cattgccgac gactccttgg atctggtcgt cacaagtggg gcacttgaat acgtgccttt
     2161 ggcggatggc atttctgaga ttgcgcgcgt gatcgctccc ggtggccacc tacttcacct
     2221 tcccatccat ccatcggtg
//
LOCUS       DATCGC010002152         1191 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_161879, whole genome shotgun sequence.
ACCESSION   DATCGC010002152 DATCGC010000000
VERSION     DATCGC010002152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1191
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161879"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..216
                     /locus_tag="VIJ87_20425"
     CDS             <1..216
                     /locus_tag="VIJ87_20425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446778.1"
                     /translation="GVVYQVKIGRGKKEGTTFHICHFSVGRWISSHELGSHRLSACLN
                     RQSPNHQLQISNDKWKMIPLVPSQTDY"
     gene            complement(210..>1191)
                     /locus_tag="VIJ87_20430"
     CDS             complement(210..>1191)
                     /locus_tag="VIJ87_20430"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5446779.1"
                     /translation="ENALDAQLKTGKEKAKAGDKDGAIAALKPVAHECLFPKKAKDAS
                     KELKKLGVEEISSFDAGSPVFSPRESARIEQVMRNGLIAEINEHYVQAEKLYLQAHRM
                     DPADPTPLRYLGEVYRHHLGDWEKARTTFEAILNMPADSIARAVALHGLGKMTIHEGQ
                     FKKGLSLMEQSVAEFPLALAYRNIAVYWNSEGDLEKGNAYTQKAIALDPKDQYNLVFA
                     AVFMAASGHGDEALKIAQANRNLLPASYNLAAIYAQTGHKQEALALLQRHFFRYERYQ
                     SVRAKEMMEARVDAVFDSLRQDSAFLALTSGADGRLQMPMKMGGTQNQNQ"
BASE COUNT          278 a          312 c          281 g          320 t
ORIGIN      
        1 ggtgttgttt atcaggtcaa gattggacga ggtaaaaaag agggaaccac tttccatatt
       61 tgccattttt cagttggtcg ttggatttca tcgcacgaac tgggttcaca tcgccttagc
      121 gcatgtctga accggcaaag cccaaatcac cagctacaaa tctcaaatga caaatggaaa
      181 atgattcccc tggtccctag tcaaacagac tattgattct gattttgcgt gccacccatc
      241 ttcataggca tctgtagcct tccatcggca ccgctcgtta gagcaagaaa tgctgaatcc
      301 tgccgaagtg aatcaaacac agcatcgact ctcgcctcca tcatttcctt ggcgcgcact
      361 gattgataac gctcataacg aaagaagtgc cgctgcaaca atgcgagcgc ttcctgctta
      421 tgacccgtct gcgcgtagat tgccgcgagg ttgtacgacg ctggaagtaa gttgcgattc
      481 gcctgcgcaa tcttcaacgc ttcatctccg tgtccggaag ctgccatgaa taccgccgcg
      541 aacaccaggt tgtactggtc ttttggatca agtgcgatcg ccttttgagt gtaggcattt
      601 cctttctcaa gatcgccctc cgaattccag taaacagcga tattgcgata ggcaagagca
      661 agtggaaact ccgcgacgga ttgctccatc aacgacagcc ccttcttgaa ctgtccttcg
      721 tgaattgtca ttttaccaag accatgcagt gcaacggctc gtgctattga atcagccggc
      781 atgtttagga tcgcctcgaa cgtggttcta gctttttccc aatcgccaag gtgatgccga
      841 taaacttcgc cgaggtatct gagcggagtt ggatcagcgg gatccattcg atgagcctgt
      901 aaatagagtt tctcagcctg gacataatgc tcattaattt ctgcgatcag gccgttgcgc
      961 atcacttgct caatgcgagc gctttcacgt ggggaaaaaa ctggagatcc agcgtcgaaa
     1021 cttgaaatct cttctacacc aagcttcttg agttctttcg aggcgtcctt tgccttcttg
     1081 ggaaacaggc actcatgagc aactggtttg agcgcggcaa tcgcaccgtc tttgtcgccg
     1141 gcttttgcct tttctttgcc ggttttcagt tgcgcgtcga gagcattctc g
//
LOCUS       DATCGC010002153         1385 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_65761, whole genome shotgun sequence.
ACCESSION   DATCGC010002153 DATCGC010000000
VERSION     DATCGC010002153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1385)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1385)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1385
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65761"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            383..937
                     /locus_tag="VIJ87_20435"
     CDS             383..937
                     /locus_tag="VIJ87_20435"
                     /inference="COORDINATES: protein motif:HMM:NF013989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEY5446780.1"
                     /translation="MRKLIFGINTTLDGCVDHTKGFSDEETHEYWTHLVRSADLLVYG
                     RKTYQLMVPFWPEVARTQSMDKASNEFALAFDSIKKVVFSRTLDSAEDKNTRIVRGNL
                     HDEIVKLKQEQGKNILVGGVDVPSQLIELGLIDEYLFVVGPVVAGEGRRLLEGVSLPE
                     GLRLKLDESKFFKSGCVALHYSKQ"
     gene            993..>1385
                     /locus_tag="VIJ87_20440"
     CDS             993..>1385
                     /locus_tag="VIJ87_20440"
                     /inference="COORDINATES: protein motif:HMM:NF015735.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HEY5446781.1"
                     /translation="MKYICLGYIEPGTFEGMTEDERHAVLDECFEHNDHLRANGHLVA
                     EVPLQPPETALTLYWKNGKVATTDGPYAETKEQLGGIQILEARDLNHAVQLVSQLPGF
                     KYGLGPVEIRPVVDLNEMMRESEQRRLRK"
BASE COUNT          396 a          301 c          366 g          322 t
ORIGIN      
        1 aaggagatca aacgcgtgaa gaacggtcga tacgtattgt taccgattac cgatcaaact
       61 cgcggtcacg gcacgcatac gatcgcttca atctggcagg gctatctcaa ggaactgctg
      121 gaaatatcga atccaaatag cgacagatag ggcaaggggt aatcactcaa gtttgagtga
      181 ttaccgcttg cccccttcct gagctgatga acgtgtcgga cactcgtttt ctcacggggt
      241 ggctcgaggt aatgaaatga aaaaatagtt tcgcctcggc tgtcgatttg ttcttcgtcc
      301 gaacgactat aggatgaacg atccagctta taaggcctca aactatcaaa agtgctggat
      361 cagaagaggg gaggagaatc caatgagaaa gctaatcttc ggaatcaaca ctaccctgga
      421 tgggtgcgtc gatcacacca aaggattttc tgacgaagag acacatgaat actggacgca
      481 tctcgttcgc agtgctgacc tgctggtcta tgggcgtaag acatatcaat tgatggttcc
      541 tttttggcct gaagtcgcca gaacccagtc gatggacaaa gcatcgaacg aatttgccct
      601 ggcatttgac tccatcaaaa aagtcgtttt ttcgcggacg ttagacagcg ccgaagataa
      661 aaatacgaga attgttcgtg ggaaccttca cgacgaaata gttaaattga aacaagaaca
      721 aggtaaaaat attctagtcg gtggtgtaga tgttccttca caacttatag agcttggtct
      781 gattgatgaa tatctttttg tcgttgggcc agtcgttgca ggagaaggaa gacggttgtt
      841 ggaaggtgtt agcctgccgg agggattgcg actaaaactc gatgaatcga agttttttaa
      901 atcagggtgc gttgcgcttc attattcgaa acagtgacaa gaagaatctg cgacagctat
      961 gttgctggct accaccaagg atcagaagaa caatgaaata catctgtttg ggatacatcg
     1021 agccaggaac attcgaaggg atgaccgaag acgagcgaca tgcagtgctc gacgaatgct
     1081 ttgagcacaa tgatcatctg cgcgccaacg gacatcttgt tgccgaagta cctctgcagc
     1141 ctccggagac cgcgttgacc ctgtattgga aaaacggcaa agtcgcgacc accgacggcc
     1201 cgtatgcgga aaccaaggaa cagcttggcg gcattcagat ccttgaggcg cgagacctca
     1261 atcacgccgt tcagcttgtc tcacagcttc caggatttaa atatggactt ggaccggttg
     1321 agatacggcc ggtagtggat ttaaacgaaa tgatgaggga gagcgagcag cggcgactgc
     1381 gaaag
//
LOCUS       DATCGC010002154         5128 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_428003, whole genome shotgun sequence.
ACCESSION   DATCGC010002154 DATCGC010000000
VERSION     DATCGC010002154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5128)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5128
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_428003"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..622
                     /locus_tag="VIJ87_20445"
     CDS             <1..622
                     /locus_tag="VIJ87_20445"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY5446782.1"
                     /translation="KEHLAAGREYLMSGRINEAVTELSTAASLDPKLSEAHNLLGVAY
                     DQKGLAERAQDSYKRAIQVEPEDPETLNNLGFSFYQNGNYRAAVDRLKRAARLAPTDE
                     RILNNLGLALCRLGKFDEAYKSFARATGPLTGNINMARMLERFGREDDAIKYYEAARQ
                     IDPNNTFALRRLADLYDRVGKPVESQSARTALSSLASGASAVSFEK"
     gene            642..1985
                     /locus_tag="VIJ87_20450"
     CDS             642..1985
                     /locus_tag="VIJ87_20450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446783.1"
                     /translation="MSHTTILTRSEIESMGPPPPEELTDTGIAEGFLCDLALKHVAML
                     PEPTTSAVAERLQLPRTLTETLLQKLYREKLIEVRVQNAVGSSRYAMLDHGWDRLTRL
                     LGICGYVGPAPVSLNDYAHMMRLQSIPTDPASIDTVRQAFHDLVLPDTLLQTLGCVIN
                     SRRSLFLTGLPGTGKTAVAERINGALAGAIWIPYAIEIDGQIIRVFDSHCHRQAHEDY
                     IPAEFDRRWIMIDRPLVIVGGELTLENADLTWSDAKFYEAPFQMKSNGGTLVIDDFGR
                     QRVAPQDLLNRWIVPLERRVDYLALHTGKKIEVPFEQLVVFSTNLEEKDLADQAFLRR
                     MGYRARVEPPTPGAYSEIFKRQASNRGFVCEQPVLDHILTKYRIERRQMKGCEPRDLL
                     DRATDICLFESHSLELTPHIVDVAWRNYFGTSHTFAPVRTEETMIERTLADPLEL"
     gene            2047..3060
                     /locus_tag="VIJ87_20455"
     CDS             2047..3060
                     /locus_tag="VIJ87_20455"
                     /EC_number="4.2.2.n1"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016798 - hydrolase activity, acting on
                     glycosyl bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEY5446784.1"
                     /translation="MIKSPHMIKVFLFCVALTAGSVPLVAQTQSVKSTEEQKSEEVRL
                     KLTDGTYMVVDDAWQTPQGIWYRKSGLSYLAPKDRVKSIQRGPEPEPAPKKQKESNDG
                     PLYMTPVVVPKPPPAKAQNNAYEQPVWIYLVGGARVEADTAIESPAGVWYKRGPMQTF
                     IERSRVDRVELEEQIADAAPGKKERGWSTGNGRLDSLIRQNGYRYGVDPYLVFLVIEK
                     ESQFNTRALSPKGAQGLMQLMPGTAARFGVRRPHDPAQNISGGTRYLRELLNRFNNRV
                     DLVLASYNAGEGAVMKYGGRVPPYKETRDYVKHISYRYRRNAVKAKKPNASETGSTPS
                     SER"
     gene            3065..3811
                     /locus_tag="VIJ87_20460"
     CDS             3065..3811
                     /locus_tag="VIJ87_20460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446785.1"
                     /translation="MKTMLRALLGIALVCVMETGAYSQQSSEAPLTNGAVIKLVKAGF
                     KEKTIIAIINSRPNRFKLETEQLIELKHNGVSENVILAMLSLAGLTGEQGDDWEDDAS
                     FFKRSTQQARDSQQNNQQGESTNIFGSGSGSKSKTESRGGQGGNESEGNVSGSATVRI
                     IRPGESSGEPAKLERTPTLNNEAVIRLVEAGFSEGTIIKRIEDSPVEFDLSPNKLQEL
                     HKRRVTDSIIAAMTTAMSDGPAKPELEKKN"
     gene            4263..>5128
                     /locus_tag="VIJ87_20465"
     CDS             4263..>5128
                     /locus_tag="VIJ87_20465"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY5446786.1"
                     /translation="MMRPIKHAERGLTLLAGGLFNAIQSVNKYKPNPSFTPKWSDKPL
                     LKSWQKSKPTLGWPRTTDSLCPNCVIEAREAIVSGKKDVSVLINEKVGEIKAQIIERD
                     GEIWMIKDCPTHGHFEDMMAIDAKFLTHIEKMFPGRDIDSHNDEKLHNHGSSTVKYGR
                     GAVLTVDLTNRCNMMCDPCFMDANQVGFVHELSMDEIKEILDNAITIKPRRQMSVQFS
                     GGEPSISPHFLEAIRYSRKVGYNSVQAATNGIEFAKSKEFCREAAEAGLRYVYLQFDG
                     IGNDANSHRQVG"
BASE COUNT         1367 a         1259 c         1338 g         1164 t
ORIGIN      
        1 aaaggaacat ctggctgcgg gtcgtgagta cttaatgagt ggtcgtatca acgaagcagt
       61 gacagagctt tctacagcgg cttcgctcga tccgaagctc tcggaagctc acaacctact
      121 gggcgtggcc tacgatcaaa aagggttagc tgaaagagct caagactctt acaaacgcgc
      181 tatccaagtt gagcccgaag atccggaaac actgaataac ttaggatttt cgttttatca
      241 aaatggcaac tatcgagcgg cggtggatcg tttgaaacgg gctgcaaggc ttgcgccaac
      301 tgacgaacgc atcctcaata acttgggact ggctctctgc cgtctcggaa aatttgacga
      361 agcatacaag agcttcgctc gcgccaccgg tcccctgacc ggaaatataa acatggccag
      421 aatgcttgaa aggttcgggc gcgaagatga tgcaatcaag tactacgaag ccgctagaca
      481 gatcgatcca aacaacacct ttgccctcag acggctggca gatctttatg accgcgtggg
      541 caagcctgtc gaatcgcaat ccgcacgtac cgctctttca tccctggcga gtggggcaag
      601 cgcggtcagt ttcgaaaagt aacgttaaat aaggaactca catgtctcac acgacgattc
      661 tgacgcgctc tgaaattgaa agcatgggac cgccaccacc cgaggagttg actgatacgg
      721 gtatcgcaga gggttttctc tgtgatttgg ctctgaaaca cgttgccatg ttgcccgagc
      781 caaccacatc agcagttgcc gaacgtttgc aactccctcg caccctaacc gagacgctgc
      841 tgcaaaagtt atatcgagag aagctaattg aagttcgggt ccagaacgcc gtcggttcga
      901 gtcgttacgc catgttggac cacggatggg accgtcttac ccggctgttg ggaatttgcg
      961 gctatgttgg gccagcgcca gtctcgttga acgactatgc tcacatgatg aggttgcaat
     1021 cgattccaac cgatccagcc tcgatcgata cggtgcggca agcgtttcat gatctcgtct
     1081 tgcctgatac gttgctgcaa acgctcggct gcgtaattaa ctcccgtcga tcactgttcc
     1141 taacgggttt gcccggcaca ggtaagacag cggtagctga acgcataaac ggcgcgctgg
     1201 cgggtgctat ctggatacca tacgcgatcg aaatcgatgg tcagattatt cgcgtctttg
     1261 attcccattg ccaccgtcaa gcacacgaag actacattcc cgctgagttt gatcggcgtt
     1321 ggattatgat cgatcgtccg ctagtcatag ttggtggtga attaacgctc gagaacgcag
     1381 atttgacgtg gagtgatgca aaattctatg aagcgccatt ccagatgaaa tcgaacggcg
     1441 gaacactggt aattgacgac tttggtcgtc agcgcgtagc tccgcaagat ctattgaatc
     1501 gctggattgt tccccttgag cgcagagttg attatttggc actgcatact ggaaagaaga
     1561 tcgaagtccc ctttgaacag ttggttgtgt tttcaaccaa cctcgaggaa aaggatttag
     1621 cggatcaagc ttttcttcgt cgcatgggtt atcgagcacg agttgaaccg ccaacacccg
     1681 gcgcgtactc ggagattttt aagcgccagg caagcaaccg cgggttcgtg tgtgaacagc
     1741 cagttcttga tcacattctg acgaagtacc ggatagaacg ccgtcagatg aaaggttgcg
     1801 aaccgcgcga tttgctcgat cgagctacag acatttgctt gtttgaaagt cacagtctcg
     1861 agttaacacc acacatcgtc gacgttgcat ggcgcaacta cttcggaacc tctcatacct
     1921 tcgcgccggt gcggactgag gaaacgatga ttgagcgaac actggccgat ccgctcgaat
     1981 tgtaaagtgc cagaacgata aatcgatcga ctatttagga cggttagtcc tgataaaggt
     2041 ttcggcatga tcaaaagccc gcacatgatc aaggtttttc tattctgtgt tgcactaact
     2101 gcgggatccg ttccgctcgt agcgcaaact cagtcggtca agagcacaga agagcaaaag
     2161 agtgaagaag tcaggttaaa actgactgac ggtacctaca tggttgtgga cgacgcttgg
     2221 caaacaccac agggaatctg gtatcgaaaa agcgggctga gttatttagc cccaaaggat
     2281 cgcgtgaagt cgatccaaag aggacccgag ccagagcctg ctcccaaaaa acaaaaagag
     2341 tcgaacgatg gcccgctgta catgactccg gtcgttgttc ctaagcctcc acctgctaag
     2401 gcacaaaaca atgcttacga gcagcctgtc tggatctacc tcgttggagg agctcgtgtt
     2461 gaagccgata ccgcgatcga atcgcccgcc ggagtttggt acaagcgcgg tccaatgcaa
     2521 actttcatcg aacggagtcg ggtcgatcgg gtcgagttag aggaacagat tgccgatgcg
     2581 gcgccaggga agaaagaacg aggctggagt acaggtaacg gaagactaga ttctttgatt
     2641 aggcaaaatg gctatcgtta tggtgtcgat ccttacttag tctttctcgt gatcgagaag
     2701 gagtcgcagt tcaatacgcg agctttatca cctaaaggcg cacagggcct aatgcaactg
     2761 atgccaggca ctgctgcgcg ttttggggtt cgtcgtccac acgatccagc gcaaaatatt
     2821 tcaggcggca ctcgctatct tcgtgagctg cttaatcgtt ttaacaaccg tgtcgatctg
     2881 gtgctggcga gctacaacgc tggtgaaggt gcggtcatga aatatggtgg aagagtgcct
     2941 ccctataaag agactcggga ttacgttaag cacattagct accgataccg gcgcaatgca
     3001 gtgaaggcaa aaaagccgaa cgcgagtgaa actggatcaa ccccttcaag cgaaagatga
     3061 ttgcatgaag actatgctcc gcgctttgtt aggaatcgct ttagtctgtg ttatggagac
     3121 tggcgcatac tcccagcaat catcagaggc acctttgacc aatggcgcgg taatcaagct
     3181 cgtgaaagcc ggcttcaaag agaagacgat catcgcgatc atcaacagcc gacccaaccg
     3241 cttcaaactc gaaacggaac aactaattga gttgaaacac aacggagtca gcgaaaacgt
     3301 cattcttgcg atgttatctc tggcggggtt gacgggtgag cagggcgatg actgggaaga
     3361 cgatgcgtcg ttctttaaac gttcaactca gcaggctcga gacagccaac agaacaatca
     3421 acaaggtgaa agcactaata tctttggttc tgggagcggg tcgaaatcga agactgagtc
     3481 gcgtggaggt cagggtggta acgagagcga gggtaacgtc tccgggtcgg ctacagttcg
     3541 catcattcga ccaggtgagt ccagcggtga accagcgaaa ctggaacgaa ctccgacact
     3601 gaataacgag gctgtaattc gacttgtgga ggctgggttc tccgagggga cgatcataaa
     3661 gcggatcgaa gactcacctg tagagtttga tctttcacca aacaagctgc aagaactgca
     3721 caagcgccga gttaccgatt cgatcatcgc ggccatgacc acagcgatga gcgatggccc
     3781 agccaaaccc gaattggaaa aaaagaatta agagtgccgc ccttcacacg atctccggtt
     3841 ctcatctgtt tcctccatcg atactcttca tcgccctcaa ctaagacacc gtaggtttcc
     3901 ttcgttaaca agccttcgcc tgattggcgt tctctcggtt acgaaagagc gagttgtttc
     3961 aaccaaatct caaggtctca tcgctgctca gcttttattg ctgcagccag ataatttctg
     4021 acggccaaaa tgtcacatgg tcgcctgcat caatgcatct gttccattaa gacacgcccc
     4081 agaccccttc acaaagttat cctttgaact caaatctaga cctaagtgta gaaataatta
     4141 aggttgttcc tttcgctgct gtggcggcat ggtcattgcc attggaattt tgacaatagg
     4201 caggtacggg tctgccgaag gccttaattc aagcaactat taaacaaaaa acagacggag
     4261 gaatgatgcg acctatcaag cacgcggaga gaggtttgac cctgttggca ggtgggcttt
     4321 tcaatgcaat tcagtcggtg aataagtaca agcccaaccc ctcatttacc ccgaaatggt
     4381 cagacaaacc gcttttgaaa tcctggcaga agagcaagcc gactctcggc tggcctcgta
     4441 ccacagattc gttgtgccca aactgcgtga tagaagcgcg agaagcaatt gtcagcggta
     4501 aaaaggatgt gagtgtcctt attaatgaga aggttggtga gatcaaggct cagatcattg
     4561 aacgcgatgg cgaaatctgg atgatcaaag actgtccaac ccacggccat ttcgaagaca
     4621 tgatggcgat cgatgcgaag ttcctgacgc atatcgaaaa gatgtttcct ggtagagaca
     4681 tcgactcgca taacgacgaa aaacttcata accacggatc gagcacagtt aagtatggcc
     4741 gcggcgccgt gttgacggtg gaccttacca accgctgcaa catgatgtgt gacccatgct
     4801 ttatggacgc aaaccaagta gggtttgtgc acgaactgag catggacgag atcaaggaga
     4861 ttctggacaa cgcaatcacg attaagccac gacgccagat gtccgttcag ttttcgggtg
     4921 gcgaaccttc aatctcgccg cacttcctcg aggcaatcag atattcgcgc aaggttggct
     4981 ataacagtgt tcaggctgca accaatggta tcgaattcgc gaagagcaaa gagttctgta
     5041 gggaagcagc cgaagctggt ttgcgttacg tctaccttca gtttgatgga atcggtaacg
     5101 atgcaaacag ccaccgccaa gttggtaa
//
LOCUS       DATCGC010002155         1266 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_130789, whole genome shotgun sequence.
ACCESSION   DATCGC010002155 DATCGC010000000
VERSION     DATCGC010002155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1266)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1266)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1266
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_130789"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            306..794
                     /locus_tag="VIJ87_20470"
     CDS             306..794
                     /locus_tag="VIJ87_20470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446787.1"
                     /translation="MRIQVVSLLAKISLLGAMVLVTTVASAQAQTFGYRIRANIPFDF
                     SIGNKKLSAGAYSIGRARQNSDDTILSILDGDGRSKAIPSSHAVETLRSKDKSTLVFH
                     RYGDQYFLYQIWRAGETTGREFVISRDERDIRRSLGQSTSTRKVAENVAVETVTIVGG
                     LQ"
     gene            882..>1266
                     /locus_tag="VIJ87_20475"
     CDS             882..>1266
                     /locus_tag="VIJ87_20475"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY5446788.1"
                     /translation="MTVDLDAQLAAAGDMEAFENIHRRYHHRVYAVCLRMIRNATQAE
                     DLAQEVFIQLFRKISTFRGDSSFGTWLHRLTVNQVLMHFRRPNVKSEQTTEDGTLPLR
                     MVTGTENPNKMAVIDRISLDQAISQL"
BASE COUNT          332 a          306 c          331 g          297 t
ORIGIN      
        1 tctccgatcc cgacggccac gatctcgaac tctgcgctcc cgtacgaaac gcttgacgtg
       61 ttaaatggaa tagtccaact gtggggagtg gctctataga agtacttgga cctgctaaca
      121 gttgggccac tcagaatgct actgcactaa actcggcgca acctttccac tggtccactt
      181 caaagttcta tccgcgcacc aaacagtcta acaataatta ttccctctgg aataaaccga
      241 cgccctgagc ggtatttaca gtgcgaggcg ttggcctcca attactaatg agagagtgag
      301 aatgtatgag gatacaagtt gtgagtctgt tagcgaagat tagtctcttg ggtgcgatgg
      361 tgctcgtaac tacggttgcg tccgcacagg cgcaaacgtt cgggtacagg ataagggcaa
      421 atatcccctt cgatttcagc atagggaata aaaagcttag cgcaggtgca tactcgattg
      481 gtcgagccag acaaaactct gatgacacca tcctatcgat attagacggg gatggcagat
      541 cgaaggcaat tccttcgtca cacgctgtcg aaacattgcg aagcaaggac aagtcgactc
      601 tggttttcca tcgttacgga gaccagtatt tcctttacca gatctggcgc gcgggtgaaa
      661 cgacagggag agagttcgtc atctctcgcg acgagcgtga tatccggcgc agtcttggac
      721 aaagtacttc aactagaaag gtagccgaga acgttgcggt cgaaaccgta accatcgttg
      781 gcggtttgca gtgaatgttg gcatcaaact cgaccgttgc atcacagcgt tgatgcctcg
      841 gtcgatcttg attcccgtgg aaagttggaa ggtcaaaaaa catgactgta gatttagacg
      901 cacagctcgc cgcggcaggt gacatggaag cattcgagaa tatccaccgt cgctatcatc
      961 atcgcgttta cgccgtgtgc ctgagaatga ttagaaatgc gacacaagcg gaggatctcg
     1021 cccaggaggt cttcatccag ctctttcgca aaatcagtac gtttcgcggc gactcatctt
     1081 ttggtacctg gctgcatagg cttaccgtca atcaagtgtt gatgcacttt cgcagaccga
     1141 acgtaaagag cgagcaaact acggaagatg gaacgctgcc gcttcggatg gtgacgggaa
     1201 ctgaaaaccc gaacaagatg gctgtaattg atcgaatttc tttggaccag gcgattagcc
     1261 agttgg
//
LOCUS       DATCGC010002156         1159 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_231566, whole genome shotgun sequence.
ACCESSION   DATCGC010002156 DATCGC010000000
VERSION     DATCGC010002156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1159)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1159)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1159
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231566"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..756)
                     /locus_tag="VIJ87_20480"
     CDS             complement(<1..756)
                     /locus_tag="VIJ87_20480"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5446789.1"
                     /translation="MMYTIWRDIRYALHMLVKQPWFTVVAVLTLGLGIGANSAIFSIV
                     NSLLLNPLPYRDSGRLAIIWSHSPGANVDKDWPSPGQFEAIRANSTVFEDIAMVQGQS
                     LNVGGLSNPMRAGAVAASSNLLPMLGTKPVLGRLFLPEEDTPDKPHTVILTNTFWRRE
                     FGGNENVLQNSLLLNGEKYEIVGVLPAGFSLGYEVVPTVASVPEPDLFLPLPMSAKEK
                     QEQGDENYNLVARLKPGATIVQAQSELDIATKRL"
     gene            complement(863..>1159)
                     /locus_tag="VIJ87_20485"
     CDS             complement(863..>1159)
                     /locus_tag="VIJ87_20485"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY5446790.1"
                     /translation="QRTHEIGVRMALGASRRDVLKLVIRQGMGLVGIGVAVGLLAALA
                     LTRVMSSLLFGVTPKDPLTFSGVALFLTVVALLACYIPARRATRVDPLVALRYE"
BASE COUNT          294 a          321 c          274 g          270 t
ORIGIN      
        1 cagccgttta gttgctatgt ctaactcgct ttgtgcttga acgattgtgg ccccgggttt
       61 caatcgcgct accaggttgt agttttcatc tccctgctcc tgcttctctt tggcactcat
      121 cggtaaaggt aaaaacaggt ccggctcggg aaccgacgca actgttggta cgacttcata
      181 acccagtgag aacccagcgg gcaggacacc cacgatttca tacttctcac cgttgagtag
      241 tagagagttc tggagtacgt tctcgtttcc tccaaactca cggcgccaaa atgtgttggt
      301 tagaattact gtgtgaggtt tgtcgggtgt gtcttcctca ggcagaaata ggcgacctaa
      361 cacaggtttc gtgccgagca ttggcaacaa atttgacgaa gcagctaccg cgccagcacg
      421 cattgggttg ctgagtccgc ctacgttcaa actctggccc tgaaccatgg caatatcttc
      481 aaaaacagtg gaattggctc ttatcgcttc gaactgtcca ggcgagggcc aatccttatc
      541 cacatttgct ccgggcgagt gactccaaat gattgccagt cgacccgaat cgcgatacgg
      601 cagtgggttc aagagtagcg agttgactat gctgaagatt gcactgttgg cgccaatgcc
      661 taacccaagg gtcaacacgg caacaacagt gaaccatggc tgcttgacca gcatatgcag
      721 cgcataacga atgtctcgcc agattgtgta catcatcagt aatcctttga gctcagatct
      781 caaatttcag atctcagatc tcagatgttt gaggatgttt ctcaaaccaa tctgagattt
      841 gcgatctgag atctgaaatt ctctattcat atctcaacgc aaccaacgga tcgactctgg
      901 tcgctcttcg cgcggggatg taacaagcga gcaacgcaac taccgtcaga aataaagcaa
      961 cgccagaaaa cgtcaacgga tccttcggcg tcacaccgaa aagtaaactc gacatcaccc
     1021 gcgtgagcgc gagcgcggcc aacagcccaa ccgccacacc aattcccacc aggcccatgc
     1081 cctgacgaat taccagcttc aaaacatcgc gccgggaagc accaagcgcc attcgcacac
     1141 cgatttcatg ggtgcgctg
//
LOCUS       DATCGC010002157         2062 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_496062, whole genome shotgun sequence.
ACCESSION   DATCGC010002157 DATCGC010000000
VERSION     DATCGC010002157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2062)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2062)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2062
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_496062"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..363)
                     /locus_tag="VIJ87_20490"
     CDS             complement(<1..363)
                     /locus_tag="VIJ87_20490"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5446791.1"
                     /translation="MNHSYHQSGNQQQDDGASAFSSEGRLLVVDDEESLRITTAAILE
                     KEGYIVDAASSGDEAIALLQKLEYDLVLTDLHMEGGDGLSVLSQIRHQSPLTISVVLT
                     GFASVESAIAALQEGAYDY"
     gene            complement(368..>2062)
                     /locus_tag="VIJ87_20495"
     CDS             complement(368..>2062)
                     /locus_tag="VIJ87_20495"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY5446792.1"
                     /translation="ADHYWTFEPGSRLGVLYVGATRDSIDPVSLSLLRRFADRIGVIA
                     SLAIQQERLVSSLTKLQRERQWNESIMKSVADPIVLTDLDNQILLQNRRAEELFSGSA
                     NAGEGKRRALKMNDLLFSAYLSSATVSSSEVIQRDITLVDPIEGSDIHFEVISTPAVN
                     ARGEPLGLVSIFRDVTDLREANEELARNFVKIQQAEAESRRERDRLDLILENVGHPVA
                     VCDVSGNYILLNRRAELLFQENETFSARAAAAVRTNAVKLTSFISGLASFAETGRQAE
                     IELIDPEGGRSLPMEITAREVLDPSGQVTALVSILHDLTEIRELERRRVEQQLFESEK
                     LAAVGRLAASIAHEVNNPLEAIKNALYLMQSDSVESKNVRFLEIARKETERVSHIIRQ
                     MLGFARQPGEVDWVDVNQVLEETLVLVEKKLKQSKVRVVRKFDEALPKIRARSDQLRQ
                     VFLNLIINAQQAIHGEGEIGISTSIYEQSLQPSIVIQMSDSGVGINEDDQARIFEPFF
                     STGKKGTGLGLWVTQDIVRQHGGRIEVSSQVGKGTAFSIILQVESPILENQGKTNV"
BASE COUNT          485 a          546 c          499 g          532 t
ORIGIN      
        1 gtaatcgtaa gcaccttcct gcaaggcggc aatcgctgat tccactgagg caaacccggt
       61 tagtacaact gaaatcgtga gcggtgattg atgacgaatt tggctcagca ctgataagcc
      121 atcgccaccc tccatgtgaa gatctgtgag aacgaggtca tattcgagct tctgtagtag
      181 cgcgatggct tcgtccccgc tcgaggcggc atctacgatg tagccttcct tttcaagaat
      241 cgccgccgta gtaatacgca gactctcttc atcatcaaca accaataagc gcccctcaga
      301 agaaaaggca ctggcgccgt cgtcctgctg ctgatttccg gattgatgat atgaatggtt
      361 catcgcgtta cacgtttgtt ttcccttgat tttctagaat gggggattcg acttgtagga
      421 ttatgctaaa tgccgttcct ttacctacct gactgctgac ctcgattcga cctccatgtt
      481 gacgaacgat gtcctgggtt acccacaatc cgagaccagt tcctttcttg ccagttgaga
      541 agaacggttc gaaaatgcga gcctgatcat cctcattgat gcccaccccg ctgtcgctca
      601 tttgaatgac aatagaaggt tgcaaagact gttcgtagat cgaagtggaa attccaattt
      661 cgccctctcc atggattgcc tgttgagcgt taatgattag atttaagaac acctgtctta
      721 actgatctga gcgcgcgcgt atcttcggca acgcttcatc gaacttgcgt actaccctga
      781 cctttgattg cttgagtttc ttttctacta agacgagcgt ttcttcgagg acttggttca
      841 catcaaccca atccacctcg cccggctggc gggcaaagcc cagcatctgc ctgatgatgt
      901 gtgagacgcg ctcagtttcc ttgcgagcaa tctcaagaaa acggacattc ttactttcga
      961 cagagtctga ctgcatcaag tacagagcat tcttgattgc ctctaaagga ttgttgactt
     1021 cgtgagcaat cgatgcagcc agtcgaccaa cagccgccag cttttccgac tcaaataatt
     1081 gctgttcaac tcgtcggcgt tcgagctcac ggatttccgt caagtcgtgg aggattgaaa
     1141 caagagctgt aacctggccg ctgggatcta aaacctcgcg ggccgttatt tccattggca
     1201 aggaacggcc accttcggga tcaattagtt ctatctcagc ctgccgccct gtctcagcga
     1261 acgaggcaag acctgaaata aacgaggtta gctttaccgc atttgtccga actgcagccg
     1321 cagcccttgc actaaacgtc tcgttctcct ggaacaacaa ctcagctcgt cgattcaaca
     1381 gtatgtagtt acctgaaacg tcgcacactg caaccgggtg accgacgttt tccaaaatca
     1441 agtcgagccg atctcgttcg cgacgcgact ccgcctcggc ctgctgtatt ttgacaaagt
     1501 tccgagccag ctcttcattc gcttctcgca ggtcagtcac gtctctaaag atcgaaacaa
     1561 gtccgagcgg ttctccacgg gcgttgactg caggcgtcga gataacttca aagtgaatgt
     1621 cggagccctc aattggatcg accagagtta tgtcgcgctg tatgacttct gacgaagaga
     1681 cggttgcgct cgacagatac gccgagaaca gcaagtcgtt catcttcagg gcgcgccgct
     1741 ttccttcgcc tgcatttgca gaaccgctaa agagttcttc ggctcttcgg ttttgcagaa
     1801 gaatctggtt atcgagatct gttaagacaa ttggatcggc aaccgatttc atgatcgact
     1861 cgttccactg tcgttctcgt tgcagtttgg ttagtgagct aacgaggcgt tcttgctgta
     1921 tcgcgaggga agcgatcacg ccgattcgat ctgcaaaacg acgcaagaga cttagggaga
     1981 ctgggtcgat cgagtctcgg gttgcgccaa cgtaaaggac tccaagtcgt gagccaggtt
     2041 cgaaggtcca atagtgatca gc
//
LOCUS       DATCGC010002158         1147 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_65967, whole genome shotgun sequence.
ACCESSION   DATCGC010002158 DATCGC010000000
VERSION     DATCGC010002158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1147
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65967"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            133..>1147
                     /locus_tag="VIJ87_20500"
     CDS             133..>1147
                     /locus_tag="VIJ87_20500"
                     /inference="COORDINATES: protein motif:HMM:NF013086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEY5446793.1"
                     /translation="MASNGMKIAIVGGGLAGLAAAMKIAEGGHAVDLFSVVPVKRSHS
                     VCAQGGINGAVNTKGEGDSTWEHFDDTVYGGDFLANQSPAKAMCEMAPSIIYLFDRMG
                     VPFSRTNEGLLDFRRFGGTKHHRTAFAGASTGQQLLYALDEQVRRYEVSGKVRKFEHW
                     EMLSLILDDHQVCRGLIAMDLQTLELKAFPADAVIIATGGPGLIFGKSTNSMVCTGSA
                     VSACYQQGAKYANGEFIQVHPTSIPGEDKLRLMSESARGEGGRVWVPRKQGDTRAPSS
                     IPENERLYFLEEKYPAYGNLVPRDIATREIFQVCIEGMGVGGENQVYLDLTHIPAETL
                     DRKL"
BASE COUNT          279 a          287 c          321 g          260 t
ORIGIN      
        1 gattggagag cgagcgcaac gtttgactgg ttacgcctgc attggttttg gtgtcgtact
       61 tctcctcgtg ggcatcaacg cggcggttgc gtttattcat gaaggcggat tgttaggagg
      121 ccttattaag taatggcaag caacggaatg aagatcgcaa tcgttggtgg tggacttgcc
      181 gggttggccg ccgcaatgaa aatagccgag ggtggtcacg cagtcgatct cttctcagtg
      241 gtccccgtga agcgctctca ctcagtttgt gctcaaggcg ggataaacgg agcggtaaac
      301 acaaaaggcg aaggcgattc cacctgggaa catttcgacg acacagttta cggtggcgac
      361 ttcctggcaa accaatcacc cgcaaaagcc atgtgtgaga tggcgccctc gatcatctac
      421 ttattcgatc gcatgggggt tccgttctcc agaaccaatg aaggactgct cgactttcgc
      481 cgctttggcg gaacgaaaca tcaccgtaca gcttttgccg gagcctcgac cggacaacaa
      541 ctgctgtacg cgctcgatga acaagtccga cgttatgaag tcagcggcaa agtaaggaag
      601 ttcgaacact gggaaatgct ttcgctaatt ctcgacgacc atcaggtttg tcgcgggtta
      661 attgcgatgg acctacagac gctcgaacta aaagcattcc ccgctgacgc agtgatcatt
      721 gctactggcg gaccgggttt gatctttggt aagtcgacaa actccatggt ctgcaccgga
      781 agcgcagtct cagcgtgtta tcaacagggt gcgaagtatg cgaacggcga gttcattcag
      841 gttcacccaa cgtcgattcc aggcgaagat aaactgcgat tgatgtcgga atcagcgcgt
      901 ggcgaaggtg gccgagtttg ggttccacga aaacaaggcg acacgcgtgc tccttcatcg
      961 ataccggaga acgagcgact ctatttcctt gaagagaagt atcctgccta cggcaatctt
     1021 gttccgcgtg acatcgccac cagggaaatc ttccaggtct gcatcgaagg aatgggggta
     1081 ggtggtgaaa accaggtcta tctcgatctc acccacattc cagcagagac tctggatcgc
     1141 aaactag
//
LOCUS       DATCGC010002159         2063 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_428122, whole genome shotgun sequence.
ACCESSION   DATCGC010002159 DATCGC010000000
VERSION     DATCGC010002159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2063)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2063)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2063
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_428122"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2063)
                     /locus_tag="VIJ87_20505"
     CDS             complement(<1..>2063)
                     /locus_tag="VIJ87_20505"
                     /inference="COORDINATES: protein motif:HMM:NF024117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEY5446794.1"
                     /translation="FRTAINSIKSPENSAYVGLPVLLLDVVVHSALEKEFIEALAKSA
                     ANVLATVPRGDHRTIQNLQVALKTDAHENISAESRATGSLTCVKEHLFQDTAPPRAKL
                     DSSVKLSNWPGEPRECIEIVRSIQSEAAQGVPLDQMAVLLNSPGEYRAHLNEAFARSD
                     IPAYFVQGITAPDPAGRAMLALLACAADGLSAKRFAEYLSLGELPANEATKDVESNWV
                     APTDELAQTSFNFEEPDLEVQPTPLPVPDPKVTNVIDGSLRAPARWERLIVDSAVIGG
                     KERWSRRIEGLANELQLRIQEAAPEEEALVASLRRQLDDLKALREFALPLIDRLSKFP
                     SEALWSEWLAHLRELSVNALRNPEGVMATLADLEPMSTVGPVGLNEVQLILESRLRDL
                     RVKPQSRPYGSVFVGPIDAVRGMSFQVVFVPGLAERVFPRKIVEDPILPDTQRKELNK
                     LLPTREDQRDTERLALRLAVGSARDRVYLSYPRIDVQQSRPRVPSFYALEALRAAEGE
                     LPGFEQVAARAEQTTRARLGWPAPETPQDAIDEAEYDLALLANLVESSKKEATGAAHY
                     LLTANSHLARALRARSRRYLRRWTPNDGLVDPDELALASIARHQFSSRSFSATALQLY
                     SSCPYRFFLSAVMRLQLRRELAAIEVVDPLTRGSLFHEAQFEILTKLKADGMLPLTGL
                     DHRKQ"
BASE COUNT          470 a          549 c          567 g          477 t
ORIGIN      
        1 ttgttttcga tggtcgagtc cagtcagcgg caacattcca tcagctttca actttgtcag
       61 aatttcaaac tgcgcttcgt gaaacaacga gccacgcgtc aacggatcaa ctacctcaat
      121 cgcggctaac tcgcgtcgca actgcagacg cataactgca cttagaaaga atcgataagg
      181 acaactggaa tagagttgta acgcggtcgc agaaaatgac cgcgacgaaa actgatggcg
      241 cgcaatgctg gcgagcgcta actcatccgg atctacgagc ccgtcgtttg gggtccacct
      301 tctcaggtag cgccggctgc gagcgcgcaa ggcgcgcgcg agatggctgt ttgcggtcag
      361 tagataatga gctgccccgg tcgcttcttt cttgctcgac tccaccaggt tagcgagcaa
      421 tgccaggtcg tactccgctt cgtcgatcgc gtcctgtgga gtttccggag ccggccaacc
      481 aaggcgggca cgcgttgtct gttcggctcg cgctgcgact tgttcaaatc caggtagctc
      541 accttcagct gcacgcaacg cttccagtgc atagaaagac gggacacgcg gtcgcgactg
      601 ctggacatca atgcgcggat aggaaagata gactcggtcg cgtgcgctgc cgacagcaag
      661 ccgcaaggcg agacgctcgg tatcgcgttg atcctctctg gttggcagca gcttgttgag
      721 ttccttgcgc tgagtgtcgg gcagaattgg gtcttcgact atttttcggg gaaagacgcg
      781 ttctgctaac ccgggaacaa agacaacttg aaaagacatt ccacgcacgg catcaattgg
      841 gccaacaaag acgctgccgt agggacgaga ctgcggtttg actctgagat cgcgtagacg
      901 cgactccagg attagttgga cttcgttgag accaacggga ccaacagtgc tcatcggttc
      961 caggtcggcg agtgttgcca taacgccttc cggattacga agagcgttga cactcaactc
     1021 ccgcaagtgt gctaaccact cactccaaag tgcctcggat gggaacttgc tcaaacgatc
     1081 aatgagcggc agggcaaact ctcgaagcgc cttcaaatcg tcgagttgac gccgaagcga
     1141 cgccacgagc gcttcttctt ccggagccgc ttcctggatt ctaagttgca actcattggc
     1201 gaggccttca attcggcgcg accatcgctc tttcccgcct attactgctg aatcaactat
     1261 gagtcgttcc caacgagcag gcgctctgag agatccatca attacgttcg tgactttcgg
     1321 atctggaacg ggaagaggag tgggttgtac ttcaagatct ggttcttcaa aattgaaact
     1381 cgtttgcgca agttcatcag ttggcgctac ccagtttgat tcaacgtcct tagttgcttc
     1441 gttagccggc aattcaccca gtgacaaata ttcggcaaat cgtttcgccg ataaaccatc
     1501 agcagcacat gccaggagcg cgagcattgc acgcccggcc gggtcaggtg ccgtgatgcc
     1561 ttgaacaaag tacgcgggaa tgtcagaacg cgcgaaggct tcatttagat gtgcgcgata
     1621 ttcgccagga gagttgagca atacggccat ctgatccaaa gggacgcctt gcgcagcttc
     1681 gctttgaata cttctgacaa tttctatgca ctcacgtggt tcgccgggcc agttgctcag
     1741 tttgacactc gaatcaagtt ttgcgcgggg cggagcagtg tcctgaaaaa gatgctcttt
     1801 aacacaggtc agacttcctg ttgcgcggct ttccgctgat atgttttcgt gagcgtctgt
     1861 ttttagagcc acctgcagat tttgaatcgt tcggtggtct ccacgaggaa ccgttgcgag
     1921 tacgttggca gcacttttcg cgagcgcttc gatgaactcc ttttccaagg ctgaatggac
     1981 gacaacatcc aggagcaaaa caggcaggcc gacgtaggct gagttttcgg gcgacttgat
     2041 ggagttgatt gcagtgcgaa aga
//
LOCUS       DATCGC010002160         2809 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_496088, whole genome shotgun sequence.
ACCESSION   DATCGC010002160 DATCGC010000000
VERSION     DATCGC010002160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2809)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2809)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2809
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_496088"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            171..2096
                     /locus_tag="VIJ87_20510"
     CDS             171..2096
                     /locus_tag="VIJ87_20510"
                     /inference="COORDINATES: protein motif:HMM:NF024833.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YMGG-like glycine zipper-containing protein"
                     /protein_id="HEY5446795.1"
                     /translation="MRPITKTILMSLLALVVSATIAETTSAQFGASSASIRELVSRIQ
                     TDTSTLRSSVQNASDRGNYRVSDLNQLIATFDAATVQFDRRLGTRRATAADARLVLDR
                     ATPIDNFFINNRVGTGIQRNWQTLRSDLDQLSLAYNLNWQWNTSGSTSGNSSLSDFQL
                     RQLVQRLDSRTTIFSRSLRSELTTRNARNDRYSIEQVRQQLTSFETSVTQLRNRATGR
                     LISSSDVSSLLQTAAYLNSFVSDRQLSYQTENTWTQIRSDLDTLAGGFNVATNWTTNP
                     GNGSYPGSGGYPSSADLTGTYRVAASQSDDARRAIDNATRNLSQVERQRVYDSLLRRL
                     DPPQMLAIDRRGTSVTIASTRAPQISFVADGREQVETSQNGRTIRVRAQLLGDELTIS
                     RTGNRADDFTVNFDLVDSGRRLLVTRTLSSDRIPQAVTVRTYYDRTSSVAQLNIYDTN
                     REYPNGNAGDVDVLGSFVVPNGTQLVAVLNESLSTQNAQQNQRFTMTVRSPSQYDGAT
                     IEGFVTSVNRSGRVTGRSDLTLDFDTIRLRDGRSYRFAGILESVRTPNGEVVRVDNEG
                     VVRDNDQTNTTVTRTAIGSAVGAIIGAIAGGGKGAAIGAVIGAGAGAGSVYVQGRNDL
                     ELTTGTEVTVSATGPRG"
     gene            complement(2155..>2809)
                     /locus_tag="VIJ87_20515"
     CDS             complement(2155..>2809)
                     /locus_tag="VIJ87_20515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446796.1"
                     /translation="KLEQASKSKGQRPKTKTYFHAKLAAMDRRPILLFTLLLASTLSV
                     SCAASLFKVKPVTELPALPTNSTNVSAGGIGIRVAPLLTDEEAQELFEANVPIGGVLA
                     VRIEMNFEGGAPIELKKARFKVRDNQNREWKLLSTKQAVSRIMKANQVFAYNPYSKKQ
                     FEQDLHAYSFDTKTPLNSGHRSGFLFFQTPDKRPVDNTAKLTLVIERLPQPVNVALN"
BASE COUNT          694 a          704 c          761 g          650 t
ORIGIN      
        1 tacgatatag aagaggtttt tgtctgaacg tgattcagcg ttcagtcagc atgtggccca
       61 tcccgatccg ccaaactccc cagaaaaaca caaccaagac acaagctcag ctactggcac
      121 aaggattgaa ggtgcttgtt agcggggaag actgaggagg gaagaagatt atgagaccaa
      181 ttacgaaaac aattttgatg agcctgctgg ctctggttgt ttcagcgacg atcgctgaaa
      241 cgacttcggc ccagtttggg gccagcagcg cttcaattag agagctcgtt agccgaattc
      301 aaacagacac gagtaccttg cgaagttccg tacaaaatgc ctcggatcgc ggcaactacc
      361 gggttagcga tctcaatcaa ctaatcgcaa cattcgatgc ggcaactgtc cagttcgata
      421 gacggctcgg tacgcgccgg gcgactgctg ccgatgcgcg actcgtcctt gatagagcga
      481 cacccataga caactttttc attaacaacc gggttggaac cgggatccag cgaaattggc
      541 aaacacttcg tagcgatctc gatcaactct cacttgctta caatctgaat tggcagtgga
      601 acacgagtgg ctcaacttcc ggcaattcaa gtctctcgga ctttcaactt cgccagttgg
      661 tgcaacgtct cgacagtcgc acaacaatat tcagccgatc actccgctct gaactgacta
      721 cgcggaatgc tcgcaatgat cgttactcaa tcgagcaggt gcgtcagcaa cttacttcct
      781 ttgagacttc tgtgacacag cttaggaatc gcgcgaccgg tcgattgatt agctccagcg
      841 atgtcagttc attgctgcag actgccgcat atctgaactc gtttgtgtct gaccgacagt
      901 tgtcgtatca aacggaaaac acctggacac aaatacgatc tgacctggac acgttagcag
      961 ggggctttaa tgtagcgacc aattggacga caaatcctgg taacggtagc tatccaggta
     1021 gtggtggtta cccgtcgagt gccgacctga ccggaaccta tcgcgttgcg gcgagtcaga
     1081 gcgacgacgc gcgtagagcg atcgacaatg cgacacgaaa cctttcgcaa gtagaacggc
     1141 agcgagtcta cgattcactc ttgcgccgac ttgatccgcc gcagatgttg gcgatcgatc
     1201 gacgcggaac gtccgtcacc atcgcatcca ctcgcgctcc acagatttca tttgtggccg
     1261 atggtcgcga gcaggttgag accagtcaaa acggccgaac aatcagagta cgagcgcagt
     1321 tgctggggga cgagctgacc atctcacgta cgggcaatcg cgccgatgac ttcaccgtca
     1381 attttgatct cgtagacagc ggtcgtcggt tgctggttac aagaaccctg tccagcgatc
     1441 gaattccgca ggcggtgaca gttagaactt actacgacag aacctcgagt gtggcgcagc
     1501 taaacatcta cgacaccaac cgcgagtatc cgaatggaaa cgccggagac gtagatgtgc
     1561 tgggatcgtt tgtggttccg aatggaactc agttagtcgc tgttctcaat gagagcctat
     1621 cgacgcagaa cgcccagcag aaccaacggt tcaccatgac tgttcgttca ccaagtcaat
     1681 atgatggcgc aacaattgaa ggcttcgtca ccagtgtcaa ccgcagcggc cgagttaccg
     1741 gtcgatcgga tttgacgttg gactttgaca ctatccggtt gcgtgatggc agaagctatc
     1801 gctttgccgg catccttgaa agcgttcgca cgccaaatgg tgaagtagtg cgcgtggaca
     1861 atgaaggcgt tgtgcgcgac aacgatcaaa ccaacacgac agtcacgcga actgccatcg
     1921 gttcagccgt tggcgccatc attggtgcaa ttgccggtgg cggaaaaggc gcggcgattg
     1981 gcgcggtgat tggtgcggga gcgggagctg gttcagtgta cgttcaaggt cgaaacgatc
     2041 tcgaactgac cactggaact gaggtgactg tttcggcgac aggacccagg ggctaagcct
     2101 ttcgtaaatt ccaatcaaca atgagcgagc aacgcaagaa gcgttgctcg ctttttaatt
     2161 gagcgctacg ttgacgggct gtggtaggcg ttcgatgact agtgttagtt tggcggtatt
     2221 gtcgactgga cgcttatccg gtgtttgaaa gaacaggaag ccgctccggt ggccggaatt
     2281 gagaggagtc ttggtatcga aggaataggc gtgcaggtct tgttcaaatt gctttttcga
     2341 atacggattg taggcaaaga cctggttcgc tttcataatc cgcgaaactg cctgcttagt
     2401 tgataacagt ttccattctc gattctgatt gtcgcgaact ttgaagcgag cttttttaag
     2461 ttcaattggt gctccacctt caaagttcat ctcaattcgg accgccagca ctccgccgat
     2521 ggggacattt gcctcaaaca actcttgcgc ttcttcgtca gtgagtagcg gcgcgacacg
     2581 aatgccaata ccaccagcgc ttacattagt cgaatttgtt ggaagcgcgg gaagctcagt
     2641 gactggctta actttgaata gtgaagccgc acaagagact gagagagtcg aagcaagcag
     2701 caacgtgaac aggagaattg gtcggcggtc catggcggcc aatttagcat ggaagtaggt
     2761 tttggtctta ggtctttggc ctttggactt tgaagcctgc tcaagtttc
//
LOCUS       DATCGC010002161         1580 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_66039, whole genome shotgun sequence.
ACCESSION   DATCGC010002161 DATCGC010000000
VERSION     DATCGC010002161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1580
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66039"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..619
                     /locus_tag="VIJ87_20520"
     CDS             <1..619
                     /locus_tag="VIJ87_20520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446797.1"
                     /translation="FVAFCLLAICALGTSTIATIVPAQEDNDFKERQPKKEHFYALAY
                     LPSGAGMRMVGAGSSANVDIRLNSYTSDAEAKTMAKALTSEGPDALLKLLENAKSRGK
                     INITGRVGFYDFKLVRSHKIEGGRRIYAVGDRPVGFLEAYVSNRSRDYPFGILQLDLK
                     RNSKGKEEGTGTLIYAAKIKVLGGKKIDVETYGIEPIRMMGLKKW"
     gene            complement(763..1389)
                     /locus_tag="VIJ87_20525"
     CDS             complement(763..1389)
                     /locus_tag="VIJ87_20525"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEY5446798.1"
                     /translation="MNPAHNYTPLQSQNSIPEGCALSLVPSDHELTQAIGRGNTSSIG
                     ALYERHRSKVYSLCLRMTGNTAEAEDLTQEVFIQLLVKAGSFRGESQFTTWLYRFTIN
                     QVLMYFRRTTRRLERTPNLFVDLETSPFIRYSLNSKLMDGIALDAAVAKLPYGARSVF
                     LKFDVEGYSHHEIAQIFGCSVGNSKSQLHKARKKLRSLLTLKRSAAVV"
BASE COUNT          401 a          372 c          410 g          397 t
ORIGIN      
        1 ctttgtggcg ttctgtctat tggctatctg cgctttggga acgtcaacga tcgcaacgat
       61 cgtccccgcg caggaagaca acgactttaa agaaagacaa ccaaagaagg aacactttta
      121 cgcccttgca tatctgccgt caggtgccgg tatgcgaatg gttggcgccg gctcgtccgc
      181 gaatgtcgac atacgcctaa acagttacac gagtgacgca gaggctaaga ccatggctaa
      241 ggccctcacc tcggagggtc ctgatgcttt gctaaaactt ctcgaaaacg caaaatcaag
      301 agggaagatc aacattactg gtcgcgtcgg cttttacgat ttcaagctgg ttcgttcgca
      361 taagattgaa ggtggaagac gaatctatgc agttggcgat cgtcccgttg gttttctgga
      421 ggcttatgtc tctaatcggt ccagggatta tccgtttgga attctgcagc tcgatctgaa
      481 gaggaatagc aaaggtaagg aagaaggcac cggtaccctt atctatgctg cgaagatcaa
      541 agtattaggt ggtaagaaga tagacgtcga aacgtatggc atcgaaccca tccgaatgat
      601 gggacttaaa aagtggtaat cgatttattg gctagtgcag aacgaggagc gaagcgacaa
      661 gcatcgaaag agagcgtacg ttgcattctg gaccaagagt gcactcttcc gtgcagttgt
      721 ttcgctcctg ctcgtttgca acgaacttga tcaggcggtt tactacacaa ccgctgccga
      781 cctcttcagc gtcaataggc tcctcagttt tttccgcgcc ttgtgaagtt gtgatttaga
      841 gttgccgacg gaacagccaa agatttgggc gatctcatga tggctgtaac cttccacgtc
      901 aaacttcaga aaaactgagc gggcaccgta aggtaatttg gccacagccg cgtccaacgc
      961 aattccgtcc atcagctttg agtttaacga atatctaatg aatggcgatg tctccaggtc
     1021 aacaaagaga ttcggtgttc tttcgagccg gcgagtagtg cgacggaaat acatcaaaac
     1081 ctgattgatc gtgaatcgat agagccaggt cgtaaactga ctttcaccgc gaaatgatcc
     1141 cgccttgacc aggagttgga taaaaacttc ctgtgtcaga tcctcagcct ccgctgtgtt
     1201 gcccgtcatt cttaagcata gagaatagac cttggatcta tggcgttcgt agagtgcgcc
     1261 gatgctcgaa gtatttcccc gtccgatcgc ctgggttaac tcgtggtcgg aaggcaccaa
     1321 cgatagcgcg cacccttcgg ggatggagtt ctgactttgc aaaggcgtgt agttgtgagc
     1381 cggattcatg ttggactcat gggctatctg gagattaata ggggggctta atacgagtcc
     1441 taagtctatt agcacggggt agcactcgaa cctgttactt ctaacaggtt gggccctaaa
     1501 ttctctgaca cattgccact aaagagtgct tctaatcctt gtggttgcga gcaatacctg
     1561 cattcccctc acaggagctt
//
LOCUS       DATCGC010002162         1634 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_332665, whole genome shotgun sequence.
ACCESSION   DATCGC010002162 DATCGC010000000
VERSION     DATCGC010002162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1634)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1634)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1634
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_332665"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(77..292)
                     /locus_tag="VIJ87_20530"
     CDS             complement(77..292)
                     /locus_tag="VIJ87_20530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446799.1"
                     /translation="MSAAITKPVRVVKQVERRQEQSSLATRDLLTDAQQQRAMVSVVS
                     SWITEQRKSKAIPTTLFRLEPEENEQN"
     gene            complement(416..1054)
                     /locus_tag="VIJ87_20535"
     CDS             complement(416..1054)
                     /locus_tag="VIJ87_20535"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEY5446800.1"
                     /translation="MIRPRIILADDHTLILEALKKLIEPEFDVVGTFSDGLALLEGAA
                     ELKPTVIVLDIGMPKTNGLNAGARLKQTMPLVKLVYLTMNQDPDIAGEAFRLGASAYV
                     LKNSAAKELLQAIREVVRGGYYVTPLMTEGMDGSFIRKFKQRKAKYSLTLRQKEVLQL
                     LAEGRSMKEVAFVLNVSPRTVAFHKYSMMEHLHIRSSAELIEYAMRSSLAPA"
     gene            complement(1067..>1634)
                     /locus_tag="VIJ87_20540"
     CDS             complement(1067..>1634)
                     /locus_tag="VIJ87_20540"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY5446801.1"
                     /translation="QAQEISSDIHRLSYKLHPAKLDHLGLAAAIKSLCDELPATPSGK
                     PRIHFHQSGFPADIPKDAALCIFRITQEVLRNCVKHSGAQSAQVVLTRDSHVIRLSVS
                     DNGLGFDMKSDVMERGLGFISMKERVRIVGGEINIFSHPLRGTRIDVSVPLNTETETV
                     KIEHGGRENQLVPRIGRRPVADVLNFRI"
BASE COUNT          364 a          425 c          402 g          443 t
ORIGIN      
        1 cctggccctt cccgctcgtg gccacttacc taagcggcct atgaaaagtc acgatgtcaa
       61 tcagcggggg ccctcatcag ttttgctcat tttcttccgg ttccaatcga aacagagtag
      121 ttggtatcgc ctttgatttt cgttgctctg taatccagga acttactacg gagaccatgg
      181 ctcgttgttg ctgtgcgtca gttagcaaat ctctagttgc caacgacgat tgctcttgcc
      241 ttcgctcgac ttgcttaaca actctgactg gttttgttat tgccgctgac atgccaacta
      301 agcctcactc gcatctcgag tatctttcga actggtccaa tgctaaccga acgctatgcc
      361 aattagtact ggcattattt acaggtctaa tgtagatggc cgtgggtaca cgacctcatg
      421 caggcgccag cgagcttctc attgcatact cgatgagctc tgcactactc cgaatgtgta
      481 ggtgctccat catcgaatac ttatgaaaag cgacggtgcg tggcgatacg ttgagcacaa
      541 atgccacttc cttcatcgag cgcccctcag ctagaagttg aagaacttcc ttctgccgca
      601 aggtcaaact atattttgct tttcgttgtt tgaacttgcg gataaatgat ccgtccatgc
      661 cctcggtcat gagtggagtc acgtaataac cgccacgtac tacctcgcgt atggcctgaa
      721 gtaattcttt ggcggcggag ttcttgagca cgtacgctga ggctcccaat cgaaaggcct
      781 cgcccgcaat gtccggatcc tggttcatcg tcaggtagac gagtttcacc aaaggcatcg
      841 tttgcttaag ccttgcaccg gcattcaagc cattcgtttt tggcatgccg atatcgagga
      901 cgatcacggt tggcttcagt tcggctgcgc cttcaagtag agccagccca tcgctgaatg
      961 tgccaactac gtcaaattca ggttcgatga gtttcttaag ggcttccaga ataagggtat
     1021 ggtcatctgc aagaattatt cggggacgga tcataattcc tccaattcag attcgaaaat
     1081 tcagcacatc ggcgacgggt cttctaccaa tgcgcggtac cagctggttc tcacggccac
     1141 cgtgttcgat tttcacggtt tcagtttcgg tgtttagggg aaccgaaaca tcaatccgag
     1201 ttcctcgaag cgggtgggaa aaaatgttga tttcaccgcc aacaattcgg acacgttcct
     1261 tcatgctgat gaaaccgagt cctctctcca ttacgtctga tttcatgtcg aatccgagtc
     1321 cgttatcgga gacggataag cgaatgacgt gggagtctct tgtcagcact acctgagcag
     1381 attgcgcgcc gctgtgtttg acgcaattcc gcagcacttc ctgtgtgatt ctgaaaatac
     1441 agagcgcggc gtccttgggg atgtcggccg ggaatccact ttgatggaag tgaattcggg
     1501 gcttaccact aggcgtcgcc ggcaactcat cacacaaact cttaatggct gccgccagtc
     1561 caaggtggtc taactttgcc ggatggagtt tgtacgacag tcgatgaatg tcgctggaaa
     1621 tttcctgggc ctgg
//
LOCUS       DATCGC010002163         1037 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_262723, whole genome shotgun sequence.
ACCESSION   DATCGC010002163 DATCGC010000000
VERSION     DATCGC010002163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1037)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1037)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1037
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_262723"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..629)
                     /locus_tag="VIJ87_20545"
     CDS             complement(<1..629)
                     /locus_tag="VIJ87_20545"
                     /inference="COORDINATES: protein motif:HMM:NF012321.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY5446802.1"
                     /translation="MRSLTRSCFLTTILVIVICLLARAFPFANKTNAQQLKNDSFTLT
                     VTVNDNKHRLLGDLEQSKFTVVVDNQPAEIMSFSNSGPTSVGILLDTSSSVLSGSKWE
                     IKKRRQSVIEGLVNLVASGDPNNEYFVMAFNSSIELLVDWTSDYPPIVSALRTVTRRD
                     QSLLNDAIVSGLNKVAEGHHKKRALIIVSDGSDNGSKNTYSFVRNSLKRS"
     gene            complement(636..>1037)
                     /locus_tag="VIJ87_20550"
     CDS             complement(636..>1037)
                     /locus_tag="VIJ87_20550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446803.1"
                     /translation="PLTGKEKDIFQQVKKLGNKDHARLNWFQDSIAEGKPYNWRCRAG
                     ARYLYICEEGLVHWCSQQRGYPGIPLADYTMEDFDREYKTEKWCASTCTLQCVHQVGI
                     LDNWRDPQMSPEQVAKEIEKKKAVDGMLQPD"
BASE COUNT          255 a          262 c          235 g          285 t
ORIGIN      
        1 gacctcttca acgaattgcg aacgaaggag tatgtgttct tcgacccgtt gtcagatcca
       61 tcgctgacaa taatcagcgc acgcttctta tgatggccct cggctacttt gttcaaacca
      121 ctcactattg cgtcgttcag aagagattga tcccgcctgg tcactgtcct taaggccgaa
      181 acaatgggag ggtaatcaga cgtccaatcc acgagcaact caatcgatga gttaaaggcc
      241 atcacaaagt actcgttatt tggatcgcct gaggcaacaa ggttcacaag cccttctatt
      301 acagattgcc ttctcttctt aatctcccat ttgctgccgc tcaacacaga tgaagaagta
      361 tctaacaaaa tgcccacgct cgtcgggccg ctattactaa acgacattat ttcggcaggt
      421 tggttgtcaa caacaacagt aaacttgctc tgctccaaat cgccgagcaa tctgtgcttg
      481 ttatcgttaa ccgttaccgt cagggtaaag gaatcgttct ttagttgttg ggcatttgtt
      541 ttgttggcga aaggaaaagc gcgagccaac aaacagatta cgattacgag gattgtagtt
      601 aagaaacagg atcgggtgag gcttcgcatc gccacctagt caggctgcaa cattccatca
      661 acagccttct tcttctcaat ctcttttgct acttgttcag gtgacatctg cggatctcgc
      721 cagttgtcga gaatgcctac ctggtgaaca cactgaaggg tacaagttga ggcgcaccac
      781 ttctcagttt tgtattcacg atcgaaatct tccatcgtgt agtccgcgag aggaatgcct
      841 ggatatccgc gctgttgcga acaccaatgg acgagtcctt cttcacagat gtagagatag
      901 cgagctcctg cgcgacaacg ccagttgtaa ggtttgcctt cggcgatact gtcctggaac
      961 cagttcaagc gcgcgtgatc tttgttcccc agtttcttta cctgctggaa gatgtctttt
     1021 tcttttccgg ttaacgg
//
LOCUS       DATCGC010002164         1208 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_231764, whole genome shotgun sequence.
ACCESSION   DATCGC010002164 DATCGC010000000
VERSION     DATCGC010002164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1208)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1208)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1208
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231764"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1208)
                     /locus_tag="VIJ87_20555"
     CDS             complement(<1..>1208)
                     /locus_tag="VIJ87_20555"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAT domain-containing protein"
                     /protein_id="HEY5446804.1"
                     /translation="KARGDYVNALQFQQRALAIAEKSGGPYHILTLTSIGNIANLYRV
                     QGDVANAIAFQTLLDERLETALTLNLAIGSERQKLAYFDSLAERTNRTISLHLNVAPG
                     EPSAASLAVLVLLQRKGRILDAVSQSLSALRERSDPEDQKLLDQFNSTAAQLAKLMLA
                     GPQQYDPADYQQQLKVLQEQKETLEATISERSLDFRLRVQPVTLPAVQSAIPPGASLI
                     EFAAYRPFDPRVEGNQYGEPRYVAYVLRQHGEVRWRELGSAKEIDASVDSLREALRDP
                     QRKDVRQLSRRVDQQIMQPLRDLLGDSTQLIISPDGQLNLIPFAALLDENENYLVQRY
                     TITYITTGRDLLRKRFARESKSGPLIIANPAFGDPAPERTVETKFDSPNNKRRTVTSA
                     RNLSEVYFAPL"
BASE COUNT          273 a          298 c          342 g          295 t
ORIGIN      
        1 agtggagcaa aatacacttc ggataaattg cgcgccgatg tcacggttct tcgcttgtta
       61 ttcggcgagt cgaatttcgt ttcgacagtt cgctcaggcg caggatcgcc gaacgcagga
      121 ttggcaataa ttagtgggcc actcttactt tcgcgcgcga atcgttttcg caaaaggtcg
      181 cggccggtgg tgatgtatgt gatcgtatat cgttgcacaa ggtagttttc attctcatca
      241 agcaaagcag cgaagggaat aaggttcagt tgaccatccg gagagatgat cagctgggtc
      301 gaatctccca gcaggtcgcg cagtggttgc atgatctgct gatcgacgcg acgtgagagt
      361 tgccgtacgt ctttgcgctg aggatcgcgc agtgcttctc tcaaggagtc cacggaggcg
      421 tcaatctctt tcgcgctgcc gagttctcgc caccgcacct caccatgttg ccgcaaaacg
      481 taagcaacgt agcgaggttc gccgtattgg ttaccctcca ctctcgggtc gaacgggcgg
      541 taggccgcaa actcaatcag tgaggcgccc ggtggaattg ccgattgaac ggcaggcaag
      601 gtgacgggct gtacgcgcaa gcggaaatcc aaactgcgtt cactaattgt ggcttcaagt
      661 gtttccttct gttcctgcag aacttttaac tgctgttgat aatcggctgg gtcatattgt
      721 tgaggaccgg ccaacatgag tttcgccagc tgtgcagctg ttgagttgaa ctgatcgaga
      781 agtttctggt cctccgggtc ggaacgctcg cgcaacgcgc tcaggctttg agatactgca
      841 tcaagaattc gacccttccg ttgcaacaac acaaggacag caagcgaagc ggccgagggc
      901 tcgccgggtg cgacgttcaa atgcaatgag atcgtgcgat tggttctttc agctagtgag
      961 tcaaagtaag ccagcttttg acgttcggaa ccaatggcaa gattcaacgt gagagcagtc
     1021 tcgagacgct catcaagtag cgtttgaaat gcgatagcat tagcgacgtc tccttgcacg
     1081 cgatacaggt tggcaatatt cccgatcgag gtaagtgtaa gtatgtgata tggcccgccc
     1141 gatttctcag ctatggcaag ggcacgttgt tgaaactgta gagcgtttac gtaatcgccc
     1201 cgcgcctt
//
LOCUS       DATCGC010002165         2576 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_496229, whole genome shotgun sequence.
ACCESSION   DATCGC010002165 DATCGC010000000
VERSION     DATCGC010002165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2576)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2576)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2576
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_496229"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(99..440)
                     /locus_tag="VIJ87_20560"
     CDS             complement(99..440)
                     /locus_tag="VIJ87_20560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019517557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HEY5446805.1"
                     /translation="MKKIEAIIKPFKLDEVKQKLTAAGITGMTITEVKGFGRQKGHTE
                     LYRGAEYTVDFLPKVKLEILAADDLVPKVVETILESAQTGKIGDGKIFVTPVEEVIRI
                     RTNERGEDAIN"
     gene            complement(522..1937)
                     /gene="glnA"
                     /locus_tag="VIJ87_20565"
     CDS             complement(522..1937)
                     /gene="glnA"
                     /locus_tag="VIJ87_20565"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HEY5446806.1"
                     /translation="MSVKDALEMAKKNKVEIVDLKFVDFPGLWQHFSIPAAELNAELF
                     EEGLGFDGSSIRGFQSINESDMILLPDADTAMMDPFTEHSTISFICNVLDAITRESYT
                     RDPRYITQKAEKYLKSTGLADTSYWGPEIEFFIFDSVRFDQNHHEGYYHIDSVEGFWN
                     SGNNSVPNLGNKIRYKEGYFPVPPMDQYQDLRSEMVLNLEKCGVKIEVHHHEVATGGQ
                     TEIDMRFDTMTKMADKVLTYKYVVKNTAKKRGKVVTVMPKPLFQDNGSGMHCHQSLWK
                     AGKNIFYDKKGYGLISDTARYYIGGLIKHAHALCAFIAPTTNSYRRLVPGYEAPINLV
                     YSARNRSACVRIPMYSTSEKAKRLEFRTPDPSANPYFAFPAMLMAGLDGIRNKTEPPK
                     PIDKNLYELEPEEAAKVKSMPGSLDQALDALEKDHEFLLRGDVFTKDVIETWLEYKRK
                     AEVDAIRLRPHPWEFALYFDI"
     gene            complement(2031..>2576)
                     /locus_tag="VIJ87_20570"
     CDS             complement(2031..>2576)
                     /locus_tag="VIJ87_20570"
                     /inference="COORDINATES: protein motif:HMM:NF013104.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia channel protein"
                     /protein_id="HEY5446807.1"
                     /translation="GLATSAFVSTHLATAAAALSWLAMDWLLRDKPTVLGAASGAVAG
                     LVAITPGSGFVGPISAIWIGIGGGIFCSIACSLKPKLGYDDSLDVVGVHGVGGTWGAL
                     ATGLFASKAINPAGNDGLFFGNPGQLWTQFVSVVVTLILAMVGTYILLSIVKAIMGLR
                     LADDEERMGLDLSQHNERAYE"
BASE COUNT          564 a          664 c          684 g          664 t
ORIGIN      
        1 aaaagaagag aattagtctt ggccttgacg gtaacgatca gaaacgatgg ttaccgcgac
       61 tgtatcagct taattttcga atgaatgcgc ggaaagagct aattaattgc gtcctcgcct
      121 ctttcgttgg tcctaattcg aatgacctct tccactggcg tgacgaagat ttttccatcg
      181 ccgatcttac cggtttgcgc cgactccaag atcgtttcga cgactttcgg cactaaatca
      241 tcggcggcca gaatttctag ctttactttc ggaagaaaat cgacggtgta ttcagcgcct
      301 cggtaaagct ccgtgtgacc cttttgtcgg ccgaagcctt tcacttctgt gatcgtcatg
      361 cccgtgatgc cggcggcagt gagtttttgt ttcacttcgt cgagtttgaa cggtttgatg
      421 atcgcttcaa tttttttcat aagattcccc tcttcttcgt tgtggggtgc agtcgctctc
      481 cccagtgaaa ggggagagcg accgaatgac agtctattac tttatatatc gaagtacaga
      541 gcgaactccc aaggatgggg acggagccgg atggcatcga cctcagcctt tctcttgtac
      601 tcgagccagg tctcgatcac gtccttggtg aatacatccc ctctgagcag aaactcatga
      661 tccttctcca gggcatcgag cgcctgatcc aacgaccccg gcatcgattt aaccttggcc
      721 gcctcttcgg gctccaactc atataagttc ttatcgatcg gcttgggcgg ctcagtcttg
      781 tttctgatcc cgtccagtcc ggccatcagc atggcgggga aggcaaagta cggattggca
      841 ctgggatcgg gggtcctaaa ctctagtctc ttggccttct cactggtgga gtacatgggt
      901 atacgcacgc aggcactgcg gtttctggcc gagtagacta aattgatcgg cgcttcatag
      961 ccggggacta atcttcgata ggagttggtc gtcggggcga taaaggcgca aagcgcgtgg
     1021 gcgtgtttaa tcaacccgcc aatgtagtat cgggcggtgt cgctgatgag tccgtagcct
     1081 ttcttgtcgt agaagatatt cttcccggct ttccacagac tctggtggca gtgcatgccg
     1141 gagccgttgt cttgaaacaa gggcttgggc atgaccgtga ccactttgcc tctcttcttg
     1201 gcggtgtttt tgaccacgta tttgtacgtg agcaccttgt cggccatctt ggtcatggtg
     1261 tcaaagcgca tgtcgatttc ggtctggccg ccggtggcga cttcgtggtg atggacttcg
     1321 atcttgactc cgcatttctc taaatttaac accatctcgg atcgtagatc ttggtactgg
     1381 tccatggggg ggacggggaa gtatccttct ttgtatcgaa tcttgttgcc gagattgggg
     1441 acgctgttgt tgccggagtt ccaaaaccct tcgaccgagt caatatggta gtagccctca
     1501 tgatggtttt ggtcgaaccg gacgctgtcg aagatgaaaa actcgatctc ggggccccag
     1561 tagctggtgt cggctaggcc ggtggatttt aaatatttct cggctttctg ggtgatgtat
     1621 ctcgggtctc gggtgtagga ctcgcgggtg atggcgtcga ggacgttgca gataaagctg
     1681 atggtggagt gttcggtgaa cgggtccatc atggcggtgt cggcgtcggg cagcaaaatc
     1741 atgtcggatt cattgatcga ttgaaatccg cgtatgctgg aaccgtcaaa ccccaaccct
     1801 tcttcgaata gctcggcatt caactcggct gccgggatcg aaaagtgctg ccataacccg
     1861 ggaaaatcca caaacttcaa atccacgatc tcgaccttat tcttcttcgc catctctaag
     1921 gcgtctttca ctgacatgga gttactcctc tctttgtagt ggtgaaaatt tttaaactca
     1981 cttttgttat catattcttg cgcagacaac tacttcgatg acgcggcaaa ctattcatag
     2041 gcgcgttcgt tgtgttgact caaatctaag cccattcgtt cttcgtcatc agccagtcta
     2101 agtcccatta tcgccttcac gatggaaaga aggatgtagg tcccaaccat agccaaaatc
     2161 aaggtaacga caaccgaaac gaattgagtc catagctgcc cagggttgcc gaagaataaa
     2221 ccgtcgttgc cggctgggtt gatcgctttc gaagcgaaaa gacctgtggc aagcgccccc
     2281 caggtgccgc cgacgccatg cactccgacc acgtccaatg aatcgtcata gccgagtttg
     2341 ggtttcaaac tacaggcgat tgaacagaat atgccaccgc cgataccgat ccaaatggca
     2401 gagatggggc cgacgaagcc tgacccggga gtgatcgcta cgagaccggc taccgcgccg
     2461 ctcgcggcac ccaagaccgt cggcttatcg cgaagaagcc aatccatggc gagccaagaa
     2521 agcgctgcgg ccgcagtagc gagatgcgtc gatacaaacg ccgaagtcgc caagcc
//
LOCUS       DATCGC010002166         1960 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_298432, whole genome shotgun sequence.
ACCESSION   DATCGC010002166 DATCGC010000000
VERSION     DATCGC010002166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1960)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1960)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1960
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298432"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1756)
                     /locus_tag="VIJ87_20575"
     CDS             complement(<1..1756)
                     /locus_tag="VIJ87_20575"
                     /inference="COORDINATES: protein motif:HMM:TIGR03434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5446808.1"
                     /translation="MMQSLWNDLAYGFRMLLKNPRFTVVSVLSLAIGIGANTAIFSVT
                     NALLFRPLPYKDAERLVILWNRSPGLNVEQDWFSPGQYLDIKAENQVFENVAATIDSS
                     FNLTGQGTPERIEGARVSSSLFTVLGTQPVVGRAFTADEDEQGKPTTAILSHAFWQRN
                     FGGKTDVIGQTLSINGNSTQIVGVMPSDFILNKEVMPTVNKISNAEILLSLPMGWGKR
                     TTRTNEDYNIFGRLKPGVTVAQAQAEVDRLVVRMKQQYPENYPPSSGFMISVVPLLQQ
                     VVGDVRRPLLILLGAVGFVLLIACANVANLQLARATIRQREIAIRAAVGAGRRRIIRQ
                     LLTESVLLSLMGGVLGLGLAVVGLRVLLNLGPDALPRLNEIVIDRRVLGFTFVVSFIT
                     GIVFGILPAFRASRVDLNGVLKDSGRGSSSATHYRVRNLFVVVEVALSLVLLIGAGLL
                     VRSYGRIQSASPGFNPKNVLSFRLSLPNSKYKGPAVTNFYKQLTDRIKVLPGVESVGT
                     SYSLPMSSVALAWGPITIEGYVPRNSADFIMSNERFVSPGYFSAMGVPLIKGRLFDER
                     DVKEAQQTVIVNENLAERF"
BASE COUNT          490 a          542 c          491 g          437 t
ORIGIN      
        1 aaaaacgctc tgcgagattt tcattgacga tgactgtctg ctgtgcctct ttcacatcgc
       61 gttcgtcaaa tagtcggcct ttgatcaagg gaacccccat cgcggaaaaa tagccgggac
      121 ttacaaagcg ctcgttcgac atgatgaagt ctgccgagtt cctcggcaca tatccctcta
      181 tggttatcgg tccccacgcg agagcaaccg agctcattgg tagcgagtaa gacgttccca
      241 cactttccac gcccggaagg actttgattc gatctgtcag ctgtttgtag aaattcgtca
      301 ctgcgggtcc cttgtatttt gagtttggca acgaaagccg aaacgacaac acattcttcg
      361 gattaaagcc cgggctcgca ctctgaatac gaccataact gcgaaccagc aaaccggcgc
      421 cgatcaacaa aaccagcgaa agggccactt caacaacgac gaataagttc cgcacacgat
      481 aatgagtcgc gctcgaggaa cccctgccac tgtctttcag caccccattt agatcaacac
      541 gtgaagcccg aaacgccggc agaattccga agacaatccc cgtaataaac gaaacaacaa
      601 aagtgaaacc gagcactctt cgatcgatga cgatttcatt cagtcgcggt aatgcatcag
      661 gaccaaggtt aagtaagacg cgcagaccaa ccactgccag acccagcccc agaactccac
      721 ccatcaacga caacaacacg ctttcggtta acagttgccg aatgatgcga cgtctgcctg
      781 cacccacggc agcgcgaatg gcgatctctc gttgtctgat cgtggcccgt gccaactgaa
      841 gattcgcgac gttcgcgcag gcaataagaa gaacaaaacc taccgcaccg agaagaatca
      901 agagaggccg ccgtacgtct ccgacgacct gctggagcaa aggcacaaca ctaatcatga
      961 agccgctgct cggaggatag ttctccggat actgttgctt catacgtacg actaaccggt
     1021 caacttctgc ctgggcctgg gccacagtga ctcccggctt caatcgtcca aatatgttgt
     1081 agtcttcatt agtgcgagtc gtacgttttc cccaccccat cggcagagac aaaagaattt
     1141 ccgcatttga gatcttgttc acagtcggca tcacctcttt gttgagaatg aagtccgaag
     1201 gcatgacgcc gacaatctgg gtcgagttgc cgtttatcga cagtgtttga ccaatcacat
     1261 cagtcttgcc gccgaagttg cgttgccaga acgcgtgact gagtatcgcc gtagttggtt
     1321 tgccctgttc gtcttcgtct gcagtgaatg cgcgtccaac caccggctga gttccaagca
     1381 cagtgaaaag ggacgaagag acgcgcgctc cttcgatacg ttcgggagtt ccctggcccg
     1441 tcaggttgaa actgctgtcg atggttgcgg caacattttc gaagacttgg ttttcggctt
     1501 ttatgtcgag gtattggcca ggtgagaacc agtcctgttc gacgttgagg ccgggactac
     1561 ggttccaaag aatgaccaaa cgttcagcgt ctttgtacgg cagtggtcga aacagaagag
     1621 cgttcgtcac actgaagatc gcggtgttgg cgccaatgcc gattgcgagt gacaacacgg
     1681 agacaaccgt gaagcgcgga ttcttcagca acatccgaaa gccgtaagcg agatcgttcc
     1741 aaagcgattg catcattgaa tgacctttcg ttcttcttct cgttaccctt tagtagctgc
     1801 ctagttgaaa agggcgcgct cttctgggac cgcaggcgtc ctcgcctgcc tacctgcgat
     1861 tcgcggatct tagtggcgac aagtgcaggc gaggacgcct gcggtcccag aagaggcgac
     1921 cgtttcaatt aggtagttac taaagggtta cccggtcact
//
LOCUS       DATCGC010002167         1235 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_162239, whole genome shotgun sequence.
ACCESSION   DATCGC010002167 DATCGC010000000
VERSION     DATCGC010002167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1235)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1235)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1235
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_162239"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..383)
                     /locus_tag="VIJ87_20580"
     CDS             complement(<1..383)
                     /locus_tag="VIJ87_20580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446809.1"
                     /translation="MAESISDVTRESVKHLRQGLLRLHKMLLDQERVGYERARGKIGN
                     SYEFLQLVLKDPWFDWLHRLSELIVQMDEALDTRDPDHPTTDKDAEALIARARTLLTP
                     SESGSEFQKNYFLALQQSPDVVLLHS"
     gene            complement(396..821)
                     /locus_tag="VIJ87_20585"
     CDS             complement(396..821)
                     /locus_tag="VIJ87_20585"
                     /inference="COORDINATES: protein motif:HMM:NF020908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1992 domain-containing protein"
                     /protein_id="HEY5446810.1"
                     /translation="MDKWEPLIERMIRESMDRGEFDDLPGAGQPIDLTENPFEAPELR
                     TVHRLLRNAGFAPAWIEERKDIDSSFKQAHTILRRARELYWRPNDQGNSNWQRALKEF
                     RECVDELNQRIRVYNLKAPATAFHRNIIDADQALKDLEG"
     gene            891..>1235
                     /locus_tag="VIJ87_20590"
     CDS             891..>1235
                     /locus_tag="VIJ87_20590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446811.1"
                     /translation="MPSAISLNTPIEDLHSFKIARLGQILARKLAAALASQTNKKHFS
                     EATVEDLLSYLPMRYEDRSHLATIKDLEAGMEATLELQVKHAGGYQVRNKKAFSKSRL
                     FIFEVSGVDLDNT"
BASE COUNT          300 a          350 c          279 g          306 t
ORIGIN      
        1 gaatgcaaca gaaccacatc cggtgactgc tgtaacgcga gaaagtaatt cttctgaaac
       61 tcacttccgg attcagacgg tgttagcaac gtcctggcgc gagcaatcaa cgcctcagca
      121 tctttgtcag tagtcggatg atctggatca cgtgtgtcga gcgcctcgtc catctggaca
      181 atcaattctg acaatctgtg caaccagtca aaccacgggt cctttaaaac cagttgcaaa
      241 aactcatagc tgttaccaat cttcccgcgc gcgcgttcgt aacccacgcg ctcctggtcg
      301 agcagcattt tgtgcaaacg aagcagacct tgtcgcaggt gctttacgga ttcgcgagtc
      361 acgtctgaga tcgattcggc cataccctgt gctccttacc cttccagatc ttttaatgct
      421 tgatcagcgt caatgatgtt tcgatgaaac gccgtcgcag gggctttcaa attgtaaact
      481 cttatgcgtt gatttagttc atcgacacac tcacgaaact ctttcagcgc ccgctgccag
      541 tttgaattac cctgatcgtt cggccgccag tatagctccc gtgctcgacg caatatcgtg
      601 tgggcctgtt tgaacgacga gtcgatatct ttacgctcct caatccacgc cggtgcgaaa
      661 cccgcattcc tgagcagacg atgcacagtt cggagctcag gtgcttcgaa tggattctct
      721 gtaaggtcga taggctggcc cgctcccggc agatcatcaa actcaccacg atccatcgac
      781 tctcggatca ttcgctcaat gagtggttcc catttatcca taagacctcc tcaatttggg
      841 taacgctcaa ccgatgcagg gtgttccatt ccctgctatg atccggtgcg atgcccagtg
      901 ccatctccct caacactcca attgaggatc ttcacagctt taagattgca cgattaggac
      961 aaatcctcgc gcgcaagctt gctgcggctc tggcttcgca gacaaacaag aagcacttca
     1021 gcgaagcaac tgtcgaagat cttttgtcct accttcccat gcgctacgag gatcggtcgc
     1081 atctcgccac aataaaagat ctagaagccg ggatggaagc gacgctcgaa ctgcaagtca
     1141 aacacgccgg tggttaccag gtcagaaata aaaaggcgtt ttcaaaatca cgcttgttta
     1201 tctttgaagt ctcaggcgtc gatctcgaca acaca
//
LOCUS       DATCGC010002168         1101 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_131146, whole genome shotgun sequence.
ACCESSION   DATCGC010002168 DATCGC010000000
VERSION     DATCGC010002168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1101)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1101)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1101
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131146"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..980
                     /locus_tag="VIJ87_20595"
     CDS             <1..980
                     /locus_tag="VIJ87_20595"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY5446812.1"
                     /translation="PGRTLLEVEGKAIGESYDKLLDRYAELSAMVGDCLQQGTLYRRT
                     EIEAVALNGQVRRLGATIAPIELPPDRGPHGALCLLTDITEVTELREQVALKNNLESL
                     GEMSAGLAHEFKNAVAALQGYVQLLQSLELNEKAEAAAASLLNEVRSLSGMVTSFLNF
                     ARPQPLHLEDVSIKDLLDECVTELQPLFAELQVKVSLDSADNLIVPADERMLRQAVLN
                     LLRNAAEAIPEESSERSVFVRVGSDNSPNGKTTTAIEVRDTGSGIPPSQLQKIFIPFF
                     TTKPKGHGVGLALTHRVITQHGGTLTAANSSEGGAVFTIRLPSEEISTL"
BASE COUNT          256 a          301 c          286 g          258 t
ORIGIN      
        1 ctccgggccg cactctactc gaagttgaag gcaaagcaat tggcgagtct tacgacaagc
       61 ttctcgatcg ttatgctgaa ttatctgcaa tggtgggtga ctgtctacaa caaggaacac
      121 tctatcgacg taccgagatt gaagctgtcg cactcaatgg ccaggtacgt cgtcttggcg
      181 caacaatcgc accgatcgaa ctaccgcccg accgtggacc tcatggagcg ctctgcttgc
      241 ttacagatat caccgaggta accgaactcc gcgaacaagt tgccctcaag aataatctcg
      301 agagtctcgg tgagatgtcg gcaggcttgg cccacgagtt caaaaacgca gtcgcggcgt
      361 tgcaagggta cgttcaatta cttcagagtc ttgaactcaa tgaaaaggca gaagctgcgg
      421 ccgcgtcatt gctaaatgaa gtgcgcagtc tttcgggaat ggttacttca tttcttaatt
      481 tcgcgcgccc gcagccactc catctcgagg atgtctcaat caaggatctg ctagacgagt
      541 gcgttacgga attgcagcca ttgtttgcgg agttgcaagt gaaggtctcg cttgactccg
      601 cagataatct tatagtgccg gcagacgaaa ggatgttgcg acaggcagtc ctcaaccttt
      661 tgcgaaacgc agccgaagca attcccgaag agagttccga acgttcggtc tttgttcgag
      721 tcggctctga caactctccc aatggcaaaa ccactactgc cattgaagtc agagatactg
      781 gctctggaat tccaccgagc cagttgcaga agatcttcat acccttcttc accaccaaac
      841 cgaaaggtca cggcgtgggg ctcgccctca ctcatcgggt catcactcag catggcggaa
      901 cgttgacggc cgcgaactcg tctgaaggtg gcgcggtgtt cacgatcaga ctaccctccg
      961 aagaaatcag taccctctag taatgcggct ctagttatgc gggttttggg tgttcggctt
     1021 tttgttatgc ggctgtgccg cgtcccgtgc ggaaagcctc cggctttccg tcaagtctgc
     1081 aacccgctta gcggctacgc c
//
LOCUS       DATCGC010002169         1021 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_198824, whole genome shotgun sequence.
ACCESSION   DATCGC010002169 DATCGC010000000
VERSION     DATCGC010002169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1021
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_198824"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..546
                     /locus_tag="VIJ87_20600"
     CDS             <1..546
                     /locus_tag="VIJ87_20600"
                     /inference="COORDINATES: protein motif:HMM:NF019241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1572 family protein"
                     /protein_id="HEY5446813.1"
                     /translation="RTPRSSYMESITDINEVSLAALRVRVTKVFPAQIRSCLEELNDE
                     QLWWRPNDQSNSVGNLALHVSGAMMHFLCRGVGGFDYVRDRPAEFATRSMPKQQLLEM
                     FDDVVSKAEQTFAGISVDRLSDPSTEPTYYSMIFEDLLGIAIHIAVHTGQIVYITKLL
                     KEGSINELWMATHRSHGAWKQ"
     gene            complement(556..984)
                     /locus_tag="VIJ87_20605"
     CDS             complement(556..984)
                     /locus_tag="VIJ87_20605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446814.1"
                     /translation="MTDKRDHSWVRSAAFQAFVSVAGWLTFGLVLEGFLGYKTPAYLH
                     DGVRRELFRLAHAHGTLLSLLLLLSALACDRFNLEVARSGQVSLRVGVTVLPLAFLIA
                     GVWHYESDPGLAIWLVPVSAVMVLFGLVTIVLSFRQRKDS"
BASE COUNT          285 a          274 c          243 g          219 t
ORIGIN      
        1 cgcactccaa ggagttcata tatggaatcg atcactgaca tcaacgaagt ttcgctcgcg
       61 gccttaagag ttcgcgttac gaaagtcttt cccgcgcaga taagatcgtg tctcgaagag
      121 ctaaacgacg aacagctatg gtggcgacct aacgatcaga gcaactcagt tggaaatctt
      181 gctctgcatg tcagtggtgc gatgatgcac tttctgtgtc gaggtgtcgg cggtttcgat
      241 tacgtgcgtg atcgtcccgc agaatttgcg acgcgctcca tgcctaaaca acagttgctt
      301 gaaatgtttg atgacgtggt ttcgaaagcc gagcagacgt ttgccgggat ctcagtggac
      361 cgcttgagtg acccttcaac agagccgact tactactcaa tgatctttga agatctcctg
      421 gggatagcaa ttcacatcgc agttcacact ggccagattg tctatataac gaaactactg
      481 aaagaaggat cgatcaacga actttggatg gccacacacc gttcgcatgg ggcatggaaa
      541 caatagagga agctttcagc tgtctttcct ttgacgaaac gacagtacaa ttgtgacgag
      601 tccaaaaagc accatcacgg ctgacaccgg cacaagccag atggccaaac ctggatcgct
      661 ctcgtagtgc caaacacctg caatcaagaa ggccagcggc aaaaccgtta ccccaacacg
      721 taacgacacc tgaccagacc tggcgacctc cagattaaat cgatcacacg cgagcgcgga
      781 taaaagtagt aacaagctca acaacgtccc atgagcgtgg gccagccgaa acaactctcg
      841 tctcacgccg tcatgcaggt aagcgggcgt tttgtaaccc agaaatcctt caagcacgag
      901 gccaaaggtt agccaccctg ccacgcttac gaatgcttga aaggcggcac tgcgaaccca
      961 ggaatgatct cgcttatcag tcataagtga atctactcgc cgacctccaa atcaacatct
     1021 t
//
LOCUS       DATCGC010002170         1179 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_98627, whole genome shotgun sequence.
ACCESSION   DATCGC010002170 DATCGC010000000
VERSION     DATCGC010002170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1179)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1179)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1179
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98627"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..797)
                     /locus_tag="VIJ87_20610"
     CDS             complement(<1..797)
                     /locus_tag="VIJ87_20610"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY5446815.1"
                     /translation="MHSKIATILFVVLLVVLGLLPTTSQSEPQDPTKTTDLTSEQIYQ
                     AKCAMCHDKPTGRIPPRAQIVRRSNEDIIQSLTTGSMKQWAEGFSAAQISALASYLTG
                     KQAGSIAQPGTNQNMCKEPAGPISLKEPLWNGWGRDLDNTHYQPKPGIKPEDVPRLKV
                     KWAWTHPGPMATGQPTIIGDRLFVTTEAGQLFSLNAQTGCTYWNVNTGAGLRSAVSVG
                     PLPAGSKAKFAIYFGDQKSNVTALDAETGELLWKTKVEDHLMSRITGS"
     gene            complement(838..>1179)
                     /locus_tag="VIJ87_20615"
     CDS             complement(838..>1179)
                     /locus_tag="VIJ87_20615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446816.1"
                     /translation="VEGAPYSVTKHAVVAFAEWLSITHGDADIKISCLCPQGVRTQML
                     LGVEGDRTSFLMKDAIEPETVADVVISGLAEERFLILPHPEVADYFTRKATDYDRWLR
                     GMRRLSAQVRG"
BASE COUNT          256 a          307 c          319 g          297 t
ORIGIN      
        1 gacccggtta ttcgcgacat caagtgatct tcaaccttgg tcttccacag taactcgcct
       61 gtttcagcat caagcgcagt cacatttgat ttctgatcgc cgaagtaaat tgcaaacttt
      121 gcttttgatc cagctggcaa tgggccgacg ctgactgcgg aacgaagtcc cgcacctgta
      181 ttcacattcc agtaagtgca accagtttgc gcgttcaaac taaagagttg accagcttca
      241 gtggtgacga agagacgatc gccaatgatt gttggttggc ccgtggccat gggaccaggg
      301 tgagtccagg cccatttgac cttcagtcgc ggcacgtcct cgggtttgat accaggcttt
      361 ggttgataat gagtgttgtc gaggtcgcgt ccccagccat tccacagcgg ttccttgaga
      421 ctgattgggc cggctggctc tttgcacatg ttctgattcg tgcctggctg agcgatagag
      481 cccgcttgtt tgccggtgag ataggaggcc agggcggaga tttgcgctgc gctgaatcct
      541 tccgcccact gcttcatcga gccggtagtt aacgattgaa taatgtcttc atttgaacgc
      601 ctcacgattt gtgcgcgcgg cggaatgcgt ccggtcggtt tgtcgtgaca catagcgcac
      661 ttcgcttgat agatctgttc acttgtaagg tccgttgttt tggttgggtc ctgcggttcg
      721 ctctgtgaag ttgtaggtag taacccaaga acgaccagca ggaccacaaa caggatggtt
      781 gcgattttag agtgcacttg gatccactcc cgctcgtgat gtttgaacaa aagggaatta
      841 gccgcgcact tgagcgctca gtcgacgcat gccgcgcagc cagcgatcgt aatcggttgc
      901 tttccgagta aagtaatcag ccacttcagg atgaggcagt atcagaaaac gttcctcagc
      961 tagccctgag atcacgacgt cggcgactgt ttccggctca atcgcatctt tcatcaggaa
     1021 gcttgttcga tcaccttcaa cgccgagcag catctgagtc cgtactcctt gcgggcacaa
     1081 acaggaaatc ttgatgtccg cgtcgccatg cgtgattgaa agccactcag caaatgcgac
     1141 gacagcgtgc ttggtaacgg aataaggggc accctcaac
//
LOCUS       DATCGC010002171         1182 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_428343, whole genome shotgun sequence.
ACCESSION   DATCGC010002171 DATCGC010000000
VERSION     DATCGC010002171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1182)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1182)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1182
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_428343"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..213
                     /locus_tag="VIJ87_20620"
     CDS             <1..213
                     /locus_tag="VIJ87_20620"
                     /inference="COORDINATES: protein motif:HMM:NF037015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HEY5446817.1"
                     /translation="VTIMASASDNIGVARVEFLVNGNLQCTDVSTPFSCSWKVPSAPN
                     KRYQIQARAFDLAGNVGTATVQVTSR"
     gene            complement(271..>1182)
                     /locus_tag="VIJ87_20625"
     CDS             complement(271..>1182)
                     /locus_tag="VIJ87_20625"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY5446818.1"
                     /translation="DVRPLDLSSVIRTAIHVVQPAAEAKGLTLDYFAQPGVGAISADS
                     ARMQQIVWNLLSNAVKFTPRGGKIFVRLEQDGSNARVTVKDTGLGIGSEFLPRVFDRF
                     LQADSSTTRSFGGLGLGLAIVRHLVELHGGAVWAESEGAGKGATFSATFPLIADRMDP
                     HALGHSGEFLAAEFQSLEGLRVLLVDDEPETRQILSTVISRRGAEVKACETAGEALDV
                     LIDWRPDVLMSDIAMPDEDGYSFIGKVRSLPPDKGGETPAAALTAYARDEDRDRALAA
                     GYQMHIAKPISSGLLVLTIARLAGRHV"
BASE COUNT          292 a          335 c          288 g          267 t
ORIGIN      
        1 gtcacgatca tggcatctgc gagcgacaac atcggcgtgg cacgagttga gttcctggtt
       61 aatggcaacc tgcaatgtac tgacgtcagc acaccgttta gctgcagctg gaaggttccc
      121 agcgcaccga acaaacgcta ccaaattcag gcgagggcat ttgatctagc tggtaacgtg
      181 ggaacagcga cggtccaggt tacatctcgc tgaatgaatc cagcaggcag tgagctcccc
      241 tgacctagtt tcaaggtgag tgtaagaggt tcagacatgg cgaccggcta gtcgcgcaat
      301 cgtcagcacc aatagtcctg aactaatcgg tttcgcaatg tgcatctgat acccggcagc
      361 gagagctcga tcgcgatctt catctctcgc gtaagccgtt agcgcagcgg ctggagtttc
      421 gccacctttg tctggaggaa gcgaccgtac ctttccgatg aaactgtatc cgtcttcatc
      481 aggcatggcg atgtcgctca taagaacgtc aggtcgccaa tcaattagta cgtccaatgc
      541 ttctccagca gtctcacagg cttttacttc cgctcctcta cgagaaatta cggtgctaag
      601 tatttgacga gtctcaggct catcatcaac aagcaacaca cgcaaaccct cgagtgactg
      661 aaactccgca gccagaaact cgccactgtg tccgagcgcg tgcggatcca tacgatccgc
      721 tatcagtggg aaggttgctg aaaacgtcgc gccttttccc gcgccctcac tctcggccca
      781 gactgcacct ccgtgaagtt cgacaagatg tctaacgatc gccaatccca aacccagccc
      841 accaaaactt cgcgtggttg aactgtcagc ctgtaggaat ctatcaaata ctctcggcag
      901 gaactcagaa ccaatcccga gaccagtatc tttcacagtt acccgggcat tcgaaccatc
      961 ttgttcaagt cgaacaaaaa ttttgccgcc ccgtggagtg aacttcacag cattcgacag
     1021 taggttccaa acaatttgtt gcattcgtgc tgagtcagca gagatcgcgc caactcccgg
     1081 ctgagcaaaa tagtccagcg ttagtccttt agcttcagcg gctggctgta ctacatggat
     1141 ggctgttctg atgacggatg agagatccaa aggcctgacg tc
//
LOCUS       DATCGC010002172         1298 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_131307, whole genome shotgun sequence.
ACCESSION   DATCGC010002172 DATCGC010000000
VERSION     DATCGC010002172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1298
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131307"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            60..905
                     /locus_tag="VIJ87_20630"
     CDS             60..905
                     /locus_tag="VIJ87_20630"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY5446819.1"
                     /translation="MKILVTGGSGYLGTHVCRFFSADDFSRRSNLNILSFPDAERVED
                     YDVVIHLAAYMDKSPDGADLSFRTNAEGTRNLILNMRPNSVFIYASTKDVYGSHANSF
                     SEPVPETCETMYTGQSAFEWSKLIGEQYLAYHAYQRNVRACIFRMSAVYARPSSGNEN
                     GFVSHYVESVKHGWPIRLPANADPVRDILYVDDFSRACKAFIDSSRVFGLYNLGGGPA
                     NAAPLREIIQTVGRLIELEPSISDDPNIPLPVPLNYVSDLSRIRDELGWQPQVSLEEG
                     LRNLL"
     gene            912..>1298
                     /locus_tag="VIJ87_20635"
     CDS             912..>1298
                     /locus_tag="VIJ87_20635"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HEY5446820.1"
                     /translation="MSQPTIREIKRVVVRGTNWVGDSVITVPALRALRRVLPQTHITL
                     VLRPGAKGLFADTDFIDDLLVYDRRNMFSVLSQAGAWRKQRFDLAILFQNAFEAALIP
                     FLAGVPLRLGYATESRQALLSHPIPLP"
BASE COUNT          302 a          349 c          322 g          325 t
ORIGIN      
        1 cccaactgac cgcgctggca aaaggacaga cggcagcagt aattggaaac tgaaccttca
       61 tgaaaattct tgtaactggt ggtagcgggt atctgggtac acacgtgtgc cgtttcttct
      121 ccgccgacga tttttcacga cgctcaaatc taaacatcct cagttttcct gacgccgaac
      181 gagttgaaga ctacgacgtt gtaattcatc tcgcagcgta catggataag tcgcctgacg
      241 gcgccgatct ctcctttcgc actaacgccg aaggaacgag aaatctcatt ctcaacatgc
      301 ggcccaactc ggtcttcatc tatgcatcaa cgaaggatgt ctacggcagc catgctaatt
      361 ccttttccga accggttccg gagacatgcg agaccatgta caccggccag tcggcatttg
      421 aatggtcaaa actaatcggt gagcagtacc tcgcttacca tgcttaccag cgaaacgttc
      481 gtgcatgtat cttccgaatg tctgctgtct acgcgcgtcc gtcttcgggg aatgaaaatg
      541 gttttgtaag tcactacgtt gagtcagtga aacacggctg gccaattcga ttgcctgcaa
      601 atgcagatcc tgtccgcgat atcctttacg ttgacgattt ctcgcgcgcc tgcaaagcat
      661 ttatcgattc atcgcgggtt ttcggtctct acaaccttgg cggtgggccc gcgaacgccg
      721 cgccactccg tgagataatt caaacggtgg gaaggctaat tgagttagaa ccgtcgattt
      781 cggacgaccc aaacattcct ttaccggtgc cccttaatta cgtttctgac ctgtcgagaa
      841 ttcgtgacga actgggttgg cagccacagg tcagccttga agagggtttg cgaaatctcc
      901 tctagtcaac gatgtcacaa ccaacgataa gggaaatcaa acgagtagtt gtcaggggaa
      961 cgaactgggt tggtgactcc gtgatcaccg tacccgctct tcgtgcgttg cgccgcgtct
     1021 tacctcaaac gcacattacg ctagtgctac gaccaggcgc taaggggctt ttcgccgaca
     1081 cagatttcat cgatgaccta cttgtttacg atcgacgaaa catgttctca gtgctttccc
     1141 aggctggggc gtggagaaag cagcgttttg atttagcgat cttgtttcag aacgcatttg
     1201 aggccgcgtt gattcccttt ctcgcaggcg tcccgctcag actgggatac gctacagagt
     1261 cgaggcaggc gttgctaagc catccaatac cgctgcct
//
LOCUS       DATCGC010002173         1088 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_131316, whole genome shotgun sequence.
ACCESSION   DATCGC010002173 DATCGC010000000
VERSION     DATCGC010002173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1088)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1088)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1088
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131316"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..821)
                     /locus_tag="VIJ87_20640"
     CDS             complement(<1..821)
                     /locus_tag="VIJ87_20640"
                     /inference="COORDINATES: protein motif:HMM:NF014790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEY5446821.1"
                     /translation="MDLDPTPKTKDLQLRLKAFMEEHIYPNEALFHDQIEAHRWAPTA
                     IVQELKTKARAAGLWNLFLPENEHGAGLSNLEYAPLCEIMGRSIMAPEVFNCSAPDTG
                     NMEVLARYGSPEQQERWLDPLLAGDIRSCFAMTEPAVASSDATNIESSIAREGDEYVI
                     NGRKWWSSGAGDPRCKIAIFMGKTDFNAPLHKQQSMILVPMDAPGVKIERLLTVFGYD
                     HAPHGHAEVSYTNVRVPVSNILLGEGRGFEIAQGRLGPGRIHHCMRCIGVAERAL"
     gene            complement(846..>1088)
                     /locus_tag="VIJ87_20645"
     CDS             complement(846..>1088)
                     /locus_tag="VIJ87_20645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446822.1"
                     /translation="ACKESLGHAPRHSNVLIFTSATPTAVLTSLALEVAGKRIRQLAG
                     VLYNSSYTVLRQRDDQLHLFQFNAVPHLTQALLTHR"
BASE COUNT          266 a          301 c          276 g          245 t
ORIGIN      
        1 tcgagcgctc tttccgccac gccgatacat cgcatgcaat gatgaatgcg cccaggccct
       61 aaacgtcctt gcgcaatctc aaatcctctt ccctcaccaa gcaatatatt cgacaccggg
      121 acccggacat tggtgtacga cacttcggca tgaccgtgag gtgcatggtc ataaccgaat
      181 acggttaaca gccgctcaat ctttacgcca ggcgcatcca ttgggacaag aatcatcgac
      241 tgctgcttgt gcaagggcgc attgaagtcc gttttaccca tgaagatcgc aatcttgcaa
      301 cgcggatcgc cggcaccaga cgaccaccac ttacgtccgt tgatgacata ttcatcaccc
      361 tcgcgcgcga tactcgattc aatattcgtg gcatcagaag aagcgactgc aggttccgtc
      421 atcgcaaagc acgagcgaat gtcgccggcg agtaaaggat ccaaccagcg ctcctgttgt
      481 tccggactgc cataccgggc caacacttcc atgttgcctg tgtcgggagc cgaacaatta
      541 aatacctccg gcgccatgat gctacggccc atgatctcgc acagaggcgc atactcgaga
      601 ttcgacaaac cagcaccgtg ttcgttctca ggaagaaata gattccaaag accagccgca
      661 cgagctttcg tctttaactc ttgaacgatg gccgtaggtg cccaacgatg agcctcaatc
      721 tgatcgtgga acagagcttc gtttggatag atatgctctt ccatgaaggc tttgagccgg
      781 agttgcaagt cttttgtttt tggtgtcgga tccaggtcca tgaacgagtg acctccgatg
      841 attaactaac ggtgtgtaag taacgcttgg gtcagatgcg gcacagcgtt gaattgaaac
      901 aaatgtaact ggtcgtcgcg ctgccggagc actgtatatg aagagttgta caacactcca
      961 gccagttgtc tgatgcgctt accggcaacc tcgagagcca ggctcgtgag cacagcagtt
     1021 ggcgttgcag acgtaaagat cagaacgttc gagtgacgcg gagcgtggcc caggctttcc
     1081 ttacaggc
//
LOCUS       DATCGC010002174         1992 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_66430, whole genome shotgun sequence.
ACCESSION   DATCGC010002174 DATCGC010000000
VERSION     DATCGC010002174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1992)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1992)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1992
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66430"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..657
                     /locus_tag="VIJ87_20650"
     CDS             <1..657
                     /locus_tag="VIJ87_20650"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY5446823.1"
                     /translation="HWNLEPDIITLAKTLSGGYVPCGAIVTRREIYQKTFSRMDRCVV
                     HSTTFGRNNLAMACGLAALEVIDQENLVERSAKMGALLMEKIEGLKTKHSFIKEVRGK
                     GLMVGIEFHEPSEFKLKMAWKLLHKIDKVLFAQMIVTQMLSKHRILTQVAGHAMDVLK
                     ILPPLIIGEKEVDMFVNALDDVLTDCRKFPGPMWELGNNFVRAAIGSRRTTQAPAVSA
                     "
     gene            903..1898
                     /gene="tal"
                     /locus_tag="VIJ87_20655"
     CDS             903..1898
                     /gene="tal"
                     /locus_tag="VIJ87_20655"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004801 - transaldolase activity [Evidence
                     IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HEY5446824.1"
                     /translation="MNTAVVEQKETATRSNQLDQLKKFTKIVGDTADFESVKQFKPQD
                     ATTNPSLVYAATQKQQYGHLLDEVLKERKNSGLSGHEQIEDICDHLLVQFGCDILQIV
                     PGRVSTETDARLSFDVDGSIKKARRLIQLYEERKIPRERVLIKIASTWEGLNAAEQLQ
                     KEGIRCNLTLMFSLPQAVRAAEAKVQLISPFVGRIYDWYKKEMKRDYVGPEDPGVQSV
                     NEVYTYYKKFDIPTEVMGASFRNTGQILELAGCDCLTISPELMEELSKSTDPVERKLT
                     TEKAKTAKVDRLELDEKKFRWLLNDNAMATDKTAEGIRKFAVDVVKLEKFVASKL"
BASE COUNT          532 a          461 c          552 g          447 t
ORIGIN      
        1 cattggaatt tggagcccga cattatcacg ctcgcgaaaa cattgagcgg cgggtacgtg
       61 ccatgcggcg caatcgttac ccggcgcgaa atttatcaga agacgttcag ccgtatggat
      121 cggtgcgttg tgcactccac aaccttcggc cgcaacaatc tcgcaatggc atgtgggctc
      181 gcagcgctgg aagtaatcga tcaggaaaat ctggtcgaac gctcagctaa aatgggcgca
      241 ttgctcatgg agaaaatcga aggcctgaag acgaaacatt ccttcattaa agaagtgcgc
      301 ggcaaaggcc tcatggtggg tattgagttt cacgaaccta gcgagttcaa gctcaagatg
      361 gcgtggaagc ttttgcacaa gatcgacaag gtgctcttcg cgcagatgat tgtgactcaa
      421 atgttgagca agcaccgcat tctgacgcag gtagccggtc acgcgatgga cgtcctgaaa
      481 atccttccgc ccctcatcat cggcgaaaaa gaagtcgaca tgtttgtcaa cgcgctcgac
      541 gacgtgttga ccgactgtcg caagttcccg ggaccgatgt gggaacttgg aaacaatttt
      601 gtccgcgctg cgattggttc gcgacggacg actcaagcgc cagcagtatc ggcgtagccc
      661 attaatccag gcacactgtc atcctgagcg tgagcgaagg acctagctac ttcggccaac
      721 ttcgaattca atttagcatg ccggagcttg agtcggtttc gtagccaaac cacgatccta
      781 atttgattga aatagctgga tgtttcgctt cgctcaacat gacaatgcct gggtcgagtt
      841 tgtcgttgtc gatcttctat tcgagcgtag tttcgagtta aaccaaaaat agaggagtta
      901 tcatgaacac cgccgttgtt gaacagaagg agaccgcaac aagatcgaat cagctcgacc
      961 agctgaagaa gtttacaaaa atcgttggcg acacagcgga ttttgaatcg gttaagcaat
     1021 tcaagccgca ggacgcgacg acgaacccca gtctggttta cgcagccact caaaaacagc
     1081 aatacgggca tttgctggat gaagttttga aagagcggaa gaactccgga ttaagcggtc
     1141 acgaacagat tgaagacatt tgcgatcatc tgttggtgca atttggatgc gatattcttc
     1201 agattgtgcc cgggcgtgtt tcaactgaaa cggatgcgcg gctgtcgttc gacgtcgacg
     1261 gttcgatcaa gaaggcaagg cgactgatcc agctttatga ggagcgcaaa attccgcgcg
     1321 aacgtgtgtt gatcaaaata gcgtcgacct gggaaggatt gaacgcagcg gagcagctgc
     1381 aaaaagaggg gatccgctgc aatttgacgc tcatgttttc gttgccgcag gcggtccgcg
     1441 cagcggaagc gaaagtacag ctcatctcac cgtttgtggg ccggatttac gattggtata
     1501 aaaaggaaat gaagcgcgat tacgtcggac cggaagaccc aggcgtgcag tcggttaatg
     1561 aggtttatac gtattataag aagttcgata ttccgaccga agtgatgggt gccagcttcc
     1621 gtaacaccgg ccagattctg gagctggcag gatgcgattg cctgacgatt agccctgaac
     1681 taatggaaga gctttcaaaa tccacggacc cagttgagcg caaactgacc acggagaaag
     1741 cgaaaacggc gaaagtcgac aggttggagt tggacgagaa aaaattccgc tggttgctaa
     1801 atgacaacgc catggcgaca gacaagacag ccgaaggcat tcgcaaattt gctgtcgacg
     1861 tcgtgaagct tgagaaattc gtggcgagca agttgtgacg actcttcctc tacgtctgcc
     1921 ctatctgctt tgatcagctg gaaagagatt gggcggaata tgaagagttg atgttcaacg
     1981 tcgttttagt cg
//
LOCUS       DATCGC010002175         2444 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_66467, whole genome shotgun sequence.
ACCESSION   DATCGC010002175 DATCGC010000000
VERSION     DATCGC010002175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2444)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2444)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2444
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66467"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..192
                     /locus_tag="VIJ87_20660"
     CDS             <1..192
                     /locus_tag="VIJ87_20660"
                     /inference="COORDINATES: protein motif:HMM:NF018076.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HEY5446825.1"
                     /translation="VCANLTADVILPMLGALVNLTCGKLVLSGILETQVEGILDELHK
                     AGVDDVEVIQDGEWVCCVV"
     gene            312..1058
                     /locus_tag="VIJ87_20665"
     CDS             312..1058
                     /locus_tag="VIJ87_20665"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: protein motif:HMM:NF008692.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HEY5446826.1"
                     /translation="MSRRRFFAPPEAFNKQPIVLTGDEAKHLRNVLRLKVGDEVYVFD
                     GAGKEFKCTVVGMRRDEVELGNCEEIEPPYSESPLSLTLAVALLKGEKFDLVVQKATE
                     LGVTKVIPVTTRFADIHLRDSSDAEKRVSRWRRIALEAAKQCGRARVPDIATPISFES
                     MILDNEQSLRLFFSERDGDGLESSTRATGPIMSVVALVGSEGGWSDEEIEKAKAAGWQ
                     IVTLGGRILRAETAAIAVSVLIQHLFSDVK"
     gene            1256..1525
                     /locus_tag="VIJ87_20670"
     CDS             1256..1525
                     /locus_tag="VIJ87_20670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446827.1"
                     /translation="MTKEEAIEKAKRDLATRLGIDESQVAEQSVSDADFPDMALGAAA
                     SGEMSGQMITKGWKIQLDGSGTTYEYRADKTQLRLFKFKGKNYKI"
     gene            1621..>2444
                     /locus_tag="VIJ87_20675"
     CDS             1621..>2444
                     /locus_tag="VIJ87_20675"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEY5446828.1"
                     /translation="MNRNNFLPHVALALVLILVAAFAGQIRRWQTQWRHHVRIMPAAD
                     KRHEPINSLEAAPYETHVFSAPEVLVKFKTGVTEDAISTITQRLHDRVDDEIESVPGL
                     DAIDDLDDANAESVAAEYRALPQVEYAEAVFEISADDAPVTPRDPRFAEQWALFNDGS
                     RGGIKGADISAMHAWHVTTGSDNVVVAVLDSGVDYTHSDLASNIWVRPANVNPYEDKE
                     LGTIQDVQGYNAVENNADPMDDNGHGTHCAGIIGAEGGNDIGIAGVNWKVQIMPLK"
BASE COUNT          627 a          594 c          676 g          547 t
ORIGIN      
        1 gtttgtgcga atctaacggc agacgtgatc ttgccgatgc tgggcgctct agtgaatctc
       61 acctgcggaa agctggtcct gtcgggaatt ctcgagacgc aggttgaagg aatactcgat
      121 gaactgcata aggcgggtgt ggatgacgtt gaagtgatcc aggatggaga atgggtctgc
      181 tgcgtagttt gaagtgtgac acagacttca gtctgggtga gcaaatatca aagttgatag
      241 tcttaatcgg aatcattggt catatatcat gtgacatttg tcagttggtc atttgatcag
      301 atccataaaa catgtctcga cgacgattct ttgccccgcc cgaagccttc aataaacaac
      361 ccatcgtact caccggcgac gaagcgaaac atttgcggaa cgtgctccga ctcaaggttg
      421 gcgacgaggt ctacgttttc gatggggcag gaaaagaatt caaatgcacc gttgtcggca
      481 tgcggcgcga cgaagtcgaa cttggcaact gcgaagagat tgagccgccg tactccgaat
      541 cgccgttgtc gctcaccctc gcggtcgcct tgctcaaagg agaaaaattc gacctggtcg
      601 ttcagaaagc cactgagctt ggcgtcacga aagtaattcc ggttacgact cgttttgccg
      661 acatacatct tcgcgattct tcggacgcgg aaaagcgagt gagccgttgg cgccgtattg
      721 cattggaggc ggccaaacaa tgcggtcgcg caagagtgcc tgacatagcg actccgattt
      781 cgtttgagtc tatgattttg gataacgaac aatcgcttcg actgttcttc tcagaacgtg
      841 atggagatgg actcgaaagc agcacccgag cgactggtcc aataatgtct gttgtagcgc
      901 tcgtcggctc tgaaggtgga tggtcggacg aagagattga aaaggcgaag gcggcaggtt
      961 ggcaaatcgt cactctcggt ggccgcattc tccgtgctga aaccgcggcc atcgcagtga
     1021 gcgtgctaat tcagcactta tttagcgacg taaagtgaca ggagcagtaa gcaggggcag
     1081 gaggcaggaa agcgacctcc tgcctactgc tcctgcctac tgcctactgt tccctcgaca
     1141 acttgctctc ccggggtttc cgtctcagaa taggcaccaa actcgctggg aacaatgaat
     1201 gcttgcgagt cgtttgaatt agcacagatt tcaaggggga aacgtccgca aaaacatgac
     1261 aaaagaagag gcaatcgaga aggctaaaag agacctggcc acccgactcg gaattgatga
     1321 aagccaagtc gccgagcaat ctgtgagtga cgccgacttt cctgacatgg ccttgggtgc
     1381 tgccgcctcc ggcgaaatga gtggtcaaat gatcaccaaa ggctggaaaa ttcaactcga
     1441 cggcagcgga acaacctacg agtatcgtgc ggacaagaca cagctgaggc tgttcaagtt
     1501 taaagggaag aattacaaga tctaggtctt tgacctttgg tcttcggtct ttggtgatcg
     1561 gcttacaaca aagacctaag acccaaaacc taagaccgat tttcgcaaga ggtaccaccc
     1621 atgaaccgca ataatttcct tccacatgtc gcactcgcac tggttctaat tcttgttgcc
     1681 gctttcgcag gtcagatccg gagatggcag actcaatgga ggcatcacgt tcgaatcatg
     1741 cctgcggctg acaagcgtca tgaacctatt aacagcttgg aagcagctcc ctacgagact
     1801 catgtattta gcgcgccgga agtcctggtg aagtttaaga ccggtgtcac tgaagatgcg
     1861 atttcgacaa tcacccagcg tctgcacgat cgcgttgatg atgagattga gtcggttcca
     1921 ggacttgatg cgattgatga tctcgacgat gcgaatgccg agtcagtggc tgccgagtat
     1981 cgtgcgttgc cacaagtgga gtatgcggaa gctgtctttg aaatcagtgc cgatgatgct
     2041 cctgtgacgc ctcgtgatcc acgtttcgct gaacaatggg cgctcttcaa cgacggttca
     2101 agaggaggta tcaaaggggc cgacatcagt gcaatgcatg catggcacgt cacgactgga
     2161 agtgacaacg tggtagtagc cgtactcgat agcggtgtcg attacacgca cagcgatctt
     2221 gcgagcaaca tctgggtgcg accagccaac gtcaatccat acgaagacaa agagctcggc
     2281 acgattcaag atgtgcaggg ctacaacgcc gtcgaaaaca acgctgatcc tatggacgat
     2341 aacggccatg gcacacactg cgccggcatc atcggcgcag aaggtggaaa cgacattggt
     2401 attgccggag tcaactggaa ggttcagatc atgccgttga agtt
//
LOCUS       DATCGC010002176         2037 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_428409, whole genome shotgun sequence.
ACCESSION   DATCGC010002176 DATCGC010000000
VERSION     DATCGC010002176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2037)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2037)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2037
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_428409"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1353
                     /locus_tag="VIJ87_20680"
     CDS             <1..1353
                     /locus_tag="VIJ87_20680"
                     /inference="COORDINATES: protein motif:HMM:NF012516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 28 protein"
                     /protein_id="HEY5446829.1"
                     /translation="TALGVPLFADDAWQSVMPGILARIKSPVFPKRDFVITKFGAKAD
                     GTTDSTQAFKQAIAACTKAGGGRVVVPKGEFLTGAIHLKSNVNLFVSSGATIKFSKNP
                     GDYLPVVFSRWEGTELMNYSPFIYAFEQTNIAITGEGTLDGQSGNDAWWPWNGRANYG
                     WKQGDPNQRADRNALQEMAEKGVAVSQRVFGAGHYLRPQFIQPYRCKNVLIEGVKIIN
                     SPMWEVHPVLCTNVTVRGLKISSHGPNNDGCDPESCSDVLIENCDFSTGDDCIAIKSG
                     RNADGRRLNAPTQNIIVRGCRMSDGHGGITVGSEISGGVRNLFAENCTLDSQNLDHAL
                     RVKNNAMRGGLLENFHFRDIKVGQVAHAVITIDFNYEEGAKGSFTPVVRNYSVERLSS
                     SKSKHALDVQGLTGAPIYDLRLTNCVFDNVDEPSIVKNVTGMTLNDVKINGKEVKELP
                     "
     gene            1361..>2037
                     /locus_tag="VIJ87_20685"
     CDS             1361..>2037
                     /locus_tag="VIJ87_20685"
                     /inference="COORDINATES: protein motif:HMM:NF012863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnogalacturonan acetylesterase"
                     /protein_id="HEY5446830.1"
                     /translation="MKLFLSLILLACAASATYGKEPITIYLAGDSTMAQKTADKRPET
                     GWGEMLQEFFSPGHVRIDNRAKNGRSTRSFIEEKLWQAIVDNLKAGDYVFIQFGHNDE
                     KEGTDRYASPADYRLNLMKFVAEVRAKQASPILFTPVMRRRFDDKGEFLDTHGAYPDV
                     VRKLAAELKVPLIDMHRKSEGVLRQYGADESRKLFLQLKPGENPNYPKGVEDNTHFNP
                     LGAQVMAG"
BASE COUNT          510 a          489 c          571 g          467 t
ORIGIN      
        1 actgctctcg gtgtcccgct cttcgctgac gatgcgtggc agtccgtgat gccagggatc
       61 ctcgcacgca tcaagtcgcc cgtctttcca aaacgcgact tcgtgatcac taagtttggc
      121 gcaaaggctg acggcacaac agactcaacg caagccttca agcaagcgat cgccgcctgt
      181 accaaggctg gcggtggtcg agttgtcgtt ccaaaaggcg agttcctaac cggagcgatt
      241 catctgaaga gcaatgtgaa tctgtttgtc tcgagcggag ctacgatcaa gttcagcaag
      301 aaccccggtg actatttgcc cgttgtgttt agccgctggg aaggcactga actgatgaac
      361 tactcgccgt tcatttacgc ctttgaacaa acgaacatcg ccattaccgg tgagggcact
      421 ctcgatggcc agagtggaaa cgatgcctgg tggccctgga atggtcgtgc gaactacggt
      481 tggaaacagg gtgatccgaa ccaacgtgcc gacagaaacg cgttgcaaga aatggcggaa
      541 aagggcgtcg cggtgagtca gagagttttt ggcgccggtc attacctgcg cccacagttt
      601 atccagccat atcgatgtaa gaatgttttg atcgaaggcg tgaaaattat taactcgccg
      661 atgtgggaag tccatccggt tctttgcaca aacgtaaccg ttcgtggatt gaagatcagt
      721 agtcacggtc cgaacaacga tggctgcgat cctgagtctt gttccgatgt gctgatcgag
      781 aattgcgact tctctactgg cgacgactgc atcgcgatca aatccgggcg caatgctgat
      841 ggccggcgtt tgaatgcgcc aacgcaaaac attatcgtgc gtggctgccg aatgagcgac
      901 gggcacggtg gaatcactgt gggcagtgaa atctctggcg gcgtgcgcaa tctgtttgct
      961 gagaattgca cgcttgatag tcagaacctc gatcacgcgc tgcgggtaaa gaacaatgcg
     1021 atgcgaggtg gcctgctcga gaattttcac ttcagagata tcaaagtcgg tcaggtcgct
     1081 cacgctgtga ttacgattga ctttaactac gaagaaggcg caaagggtag cttcactccg
     1141 gttgttcgca actactcggt cgagcggctt tcaagttcaa aaagcaaaca cgctttagat
     1201 gtgcagggcc tgaccggcgc gccaatctac gatctgcgtt tgacgaactg tgtcttcgat
     1261 aacgttgatg aacccagcat cgtgaagaac gtcacaggga tgactttgaa cgacgtcaaa
     1321 attaacggca aggaagtcaa agaactgccc taggatttct atgaagctgt ttttgagtct
     1381 gattttgctg gcctgtgccg caagtgctac ctacggtaaa gagcccatca ctatctatct
     1441 tgccggcgat tcgacgatgg cccagaagac tgccgacaaa cgaccggaaa caggctgggg
     1501 agaaatgctc caggaattct ttagtcccgg acatgtcaga atcgataatc gcgcgaagaa
     1561 cggtcggagt acacgaagct tcatcgaaga aaagttgtgg caagcgatcg tggataatct
     1621 gaaagccggt gattacgttt tcattcagtt tggacataac gacgagaaag agggtaccga
     1681 tcgttatgct tcgcctgccg actatcgttt gaacttaatg aagtttgttg ctgaagtaag
     1741 agcgaagcag gcgtccccga tcttgttcac gccggtcatg cggcggcgct tcgatgataa
     1801 gggagagttc cttgatactc atggagcgta tcctgacgtt gtgcgaaagc ttgcagctga
     1861 actgaaggtg ccgctcatcg atatgcaccg aaagagtgaa ggtgtgttgc gccaatatgg
     1921 ggccgacgag tcacgaaagt tgttcctgca actgaagccc ggtgagaatc caaattatcc
     1981 aaagggcgtt gaagacaata cgcacttcaa cccacttggt gcgcaggtaa tggcggg
//
LOCUS       DATCGC010002177         1032 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_98709, whole genome shotgun sequence.
ACCESSION   DATCGC010002177 DATCGC010000000
VERSION     DATCGC010002177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1032
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98709"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            181..987
                     /locus_tag="VIJ87_20690"
     CDS             181..987
                     /locus_tag="VIJ87_20690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446831.1"
                     /translation="MIQRLFSSLSLIVLLAVAAQAQATQTNSSSVDEKSQLIIDKAIA
                     AVGGASYLNVTTVTGHGFYSSFSQGAPQIPAKFVDYIAYPDRERTEFVGAGIRTIQTN
                     VGNTGWLFDGAVKTIKDQGPVQIEDFKLAMRTTLENLLRGWWKKEGGKITYVGRREAG
                     LAKRNETIRLTFPSGFWIEYEFGAKDNLPAKIIYKRTRKNPDTGDETETTEEDRFFKF
                     ITIDGVNAPWVIDHFINDGQVTRINYETIQYNQKLAESLFAKPENVKAIK"
BASE COUNT          284 a          236 c          275 g          237 t
ORIGIN      
        1 gagttttcga gttgaagtgg aaaacggcga gaccgtggtc aaggccgtcg agggaaacaa
       61 cccgaaactc aactaaggtg tggcacagac tttcggtctg tgttcgctca tattcacagg
      121 gtcggggttc agtgagcact cattgaaacc ccgattcttt ttgttagact tctcttcacc
      181 atgattcaac gtcttttcag ctcactttct ctgattgtgc tgcttgctgt tgctgctcaa
      241 gctcaagcga ctcaaaccaa ctcctcatca gtcgatgaaa agtcgcaact gataattgac
      301 aaagcaatcg cggcagtggg cggcgctagt tatctcaacg taaccaccgt aacaggtcac
      361 ggcttctatt caagttttag ccagggcgca ccgcaaattc cggccaagtt tgttgactac
      421 attgcctacc cggatcgcga acggaccgag tttgtcggtg ccggcatacg aacgattcaa
      481 acgaacgtag gcaacaccgg atggttgttt gatggagcag tcaagaccat taaagaccag
      541 ggcccggttc agattgagga tttcaagctg gcaatgcgca ctacgcttga aaacttgctg
      601 agaggctggt ggaagaaaga aggcggaaag attacctacg ttgggcgacg agaggctggt
      661 ttagcgaaac gaaacgaaac gatccggctg acctttccga gtggcttttg gattgagtat
      721 gagtttggag cgaaagacaa cctgccggcc aaaataattt ataaacgcac ccgcaagaat
      781 cccgacaccg gagacgaaac agaaacaacg gaagaggatc gattcttcaa gttcatcacg
      841 attgacggag tgaacgcgcc ctgggtgatc gatcatttca tcaacgatgg acaggtgaca
      901 cgaatcaact acgagacgat ccaatacaat cagaagttag cggagagttt gtttgcgaaa
      961 ccagagaatg tgaaggcgat taagtaggct ttggggagct tgtggcacag acttcagtct
     1021 gtgtcttcga gg
//
LOCUS       DATCGC010002178         1687 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_231963, whole genome shotgun sequence.
ACCESSION   DATCGC010002178 DATCGC010000000
VERSION     DATCGC010002178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1687)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1687)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1687
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231963"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1392)
                     /locus_tag="VIJ87_20695"
     CDS             complement(<1..1392)
                     /locus_tag="VIJ87_20695"
                     /inference="COORDINATES: protein motif:HMM:NF015530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446832.1"
                     /translation="MTTLRKLLSILFIIALTVTPLISQTKKTAGGDPELAKKIARFAP
                     TVLTADTARLNAKDKLALTKIIEAAKLLDPLFLRQVWSGNAALESKLLADKSAVGRQR
                     LHYFYINDGPWSRLDSNEPFIDGVPKEKPPQAAAYPDDMTRDEFNSWVQGLSEADKQK
                     ATGFFYVIRRGSDGKLTMVPYSQAYREYLEPAAKLLHEAAALATNATLKNFLNKRADA
                     FGTDDYYESDVAWMDLDAPIDVTFGPYETYEDELFSYKESFEAYVTLRDDAESAKLAK
                     FSQYLQELENNLPMDPSYRNPKLGAASPIRVVNEVYASGEGNNGVQTAAFNLPNDERV
                     VKEKGSKRVMLKNVEDAKFNKTLIPISRVVLQPTDRASLSFDSFFTHILCHELMHGLG
                     PHNITVGGQQTTVRKQLKELYSAIEEAKADMTGLWALQYMIDHNTIEKSMERTLYITY
                     LASMFRSVRFGITE"
BASE COUNT          387 a          429 c          418 g          453 t
ORIGIN      
        1 ttcagtaata ccaaacctga ctgagcgaaa catactcgcg agataagtga tgtagagtgt
       61 tcgctccata ctcttctcga ttgtgttgtg atcgatcatg tattgcagcg cccacaaacc
      121 ggtcatatcg gcttttgctt cttcaatcgc cgagtaaagc tctttcaatt gtttgcggac
      181 cgtcgtctgc tgaccaccaa ctgtaatgtt gtgtggaccg agtccgtgca tcaactcatg
      241 acaaagtatg tgtgtaaaga aggagtcaaa cgatagtgat gctcggtccg tcggttgcag
      301 gactactcgc gaaatgggaa tcagcgtctt gttgaacttc gcgtcctcca cgttcttgag
      361 cattacgcgc ttcgatccct tctccttaac tactcgctcg tcgttcggca aattaaacgc
      421 ggcggtctgg actccgttgt tcccctcgcc tgaggcatac acttcattta ccactcgaat
      481 cggagatgct gcgcccagtt ttggattgcg atacgacgga tccatcggca gattgttttc
      541 caactcctgg aggtactgac taaacttcgc cagcttcgcc gattcagcgt cgtcgcgcag
      601 agtcacataa gcttcaaacg attccttgta actaaacaac tcgtcttcgt aggtttcgta
      661 agggccgaat gtcacgtcta tcggtgcatc cagatccatc caggccacgt cactctcgta
      721 gtagtcgtca gtgccaaacg cgtcggcgcg tttattgaga aaattcttga gcgtcgcgtt
      781 tgttgctaag gctgcggcct cgtgaagaag ctttgcggcg ggttcgagat actcacgata
      841 cgcctggctg taaggaacca tggtcagctt gccatcactc ccacgacgaa tgacgtagaa
      901 aaacccggtc gctttttgtt tgtcagcttc cgacaatccc tgcacccacg aattgaattc
      961 atcgcgcgtc atatcgtcag gataagcggc ggcttgtggc ggcttctctt tcggcacgcc
     1021 atcaatgaaa ggctcattac tatcaaggcg cgaccaggga ccgtcgttga tgtagaaata
     1081 atgaagacgt tgacgaccga ccgctgattt gtcagccaaa agtttagact caagcgcagc
     1141 attgccactc cacacctggc gcagaaacaa tggatcgaga agtttcgccg cctcgatgat
     1201 cttcgtgaga gcgagtttgt ctttcgcatt caggcgagcc gtatcggcag ttagtacggt
     1261 cggagcgaaa cgagcgatct ttttcgccag ctccggatcg cctccagcag ttttctttgt
     1321 ttgactaatc aatggagtaa ccgtcaaagc gataatgaaa aggatggaaa gtagttttct
     1381 taatgtagtc atacatgatc ctcaggagtt gtttggtatt taattctctt ttgtctgatc
     1441 tgtgtccatc tgcgttcatc tgtggctgga ctcttcgggg tcgtcgcgtt agatgacttc
     1501 cgcagcgatg gagtcagtac cataacgcgg tagcgtatgg ctatctgaaa tactaacgag
     1561 gtggagccat acgctaccgc gttatggtac tgactccatc gccactgcat cgctcgtacg
     1621 cggagataac gacaagctga agcatatcgg acatctcgga cgtcataagt tctggcggtt
     1681 ctttaga
//
LOCUS       DATCGC010002179         1697 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_298664, whole genome shotgun sequence.
ACCESSION   DATCGC010002179 DATCGC010000000
VERSION     DATCGC010002179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1697)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1697)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1697
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298664"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            64..189
                     /locus_tag="VIJ87_20700"
     CDS             64..189
                     /locus_tag="VIJ87_20700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446833.1"
                     /translation="MAASFTLGFDVEVVNNDAADLLVDFMWTLATPVASAAKAHW"
     gene            complement(499..1032)
                     /locus_tag="VIJ87_20705"
     CDS             complement(499..1032)
                     /locus_tag="VIJ87_20705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446834.1"
                     /translation="MTNFVSTLCLVLLCSAIFLGSSTLAAPQESGLDGTYILDVTDSD
                     NINEVIETAVGKLDFVRRDIARGRLEKLNPAYRKVAITSSPNEISVTVDNQPPLRAPA
                     KGTPVAWVSPDGRKVNVSMELAGRRLEQTFTSADGHRVNDYTLSPDGRTLTMQVTETS
                     PQLSQTITYKQVYRRIS"
     gene            complement(1459..>1697)
                     /locus_tag="VIJ87_20710"
     CDS             complement(1459..>1697)
                     /locus_tag="VIJ87_20710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446835.1"
                     /translation="DEEGKVNTVRYDAVNAMLLNEFLKEHRKVEELSSIVAEQRKEVN
                     ALAAAVKEQAAQVQKVSAQVELSKPQPRMIVNKQ"
BASE COUNT          351 a          468 c          419 g          459 t
ORIGIN      
        1 ataaaacttt ttaaagattt aactctctcc gccacgtttt tgtcctgagt ctcggcctta
       61 ttcatggccg cctccttcac attgggattc gatgtcgaag tcgtgaataa tgacgctgct
      121 gatctgttgg tcgatttcat gtggacacta gcgacgccgg ttgcgtctgc tgcaaaagcg
      181 cattggtaag attttgtagt gagacctatg agctaacgct ggctctctct cttaggatag
      241 gaggtcatcc tacgttctcc gccgtttttc tcgacatctc tctgagcgcg gcggccatct
      301 tactaacgac tgaggcctgt gttggctacg ttgtgtcgtc gcatccaaga aactatctcc
      361 gaccacagtc caatcattgt ggatctacct ctgcaggaac cttccttgac aacccgtctg
      421 cttcggcatt gaggcgaaaa ggataacaaa ccacgcgtat tgcgcttact cgaacagcag
      481 ggccgtcggc atcctctttc aggagattcg tctgtaaact tgtttgtacg tgatcgtttg
      541 agacagttgg gggctcgttt ctgtcacttg catagtcagc gtccgcccat cagggcttag
      601 agtgtaatca ttaactctgt gcccgtctgc tgacgtgaat gtctgctcca aacgccggcc
      661 tgccaactcc atactaacgt tcacctttct tccgtcaggg ctaacccagg cgacaggtgt
      721 acccttcgcc ggtgcgcgta gcggcggctg gttatccacg gtgacgctga tttcattcgg
      781 agaagaagtg atggctactt tgcggtaagc ggggttcagt ttctcgaggc gtcctcgagc
      841 gatatctcgc ctcacgaagt ccagcttccc caccgcggtt tcgatcacct catttatatt
      901 gtcgctgtcg gttacgtcca ggatgtaagt tccatccagg ccggactcct gtggggcagc
      961 tagtgtactt gagccgagaa agatcgcact gcacagcagg acgaggcaaa gtgtcgacac
     1021 gaaattagtc atagccattt ttctcctggg ccggtgacga gctatattct gccgtgagtt
     1081 ctcatcattc gagcatcaga aggtattcgc tgaagccaac ccgccgctat aaaatgggag
     1141 ggatgtaaca cggctcgctg ccacaccaga acgatcgcga gcgtagccag tttcttattt
     1201 tcatcggtaa tcatatcttg tacctaaccg gtcgtgtaaa caatattgcc gttgttggga
     1261 tcaagtgccc aatagatgtc gctcctctag ccaaaaccga cgagtcgtcg gcagcttagc
     1321 gccaccgacg actgtctccc cctcaaaact ctttcgctta gtgaaattga tattctcgac
     1381 tcgactggca agctcgaacg caccattgcg tttagcgagg cggatcgaat gctgtgattg
     1441 cgcagtagga aatgcgcgtt actgcttgtt aacgatcatt cgcggctgag gtttgcttag
     1501 ctcaacctgt gcgctcacct tctggacttg cgcggcctgc tctttcacag ccgctgcaag
     1561 agcattaacc tccttgcgct gctccgcgac gatggagctc aactcttcca ctttgcgatg
     1621 ctctttgagg aattcgttca gcagcatcgc gttcactgcg tcgtagcgca ccgtgttcac
     1681 tttgccctcc tcatcac
//
LOCUS       DATCGC010002180         1828 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_428507, whole genome shotgun sequence.
ACCESSION   DATCGC010002180 DATCGC010000000
VERSION     DATCGC010002180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1828)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1828)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1828
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_428507"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..688)
                     /locus_tag="VIJ87_20715"
     CDS             complement(<1..688)
                     /locus_tag="VIJ87_20715"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY5446836.1"
                     /translation="MSKRVILFGPLPPPYGGVSVLLSTLFEHLKGSPIFVWALFGKQS
                     DDSRITRFNHRRLGVLKALAKQGYKSRIVDFTHFHLEYPNLILLPIWLIAKSLLRFEW
                     IKHVNDGSLPARYAGFSSAQKRRFRRALTAIDEYIAVSEELRDWLTKEIKVTKKITVI
                     PSLVNITSDSLTIKLNSETEARLAGFLKHPKRVCSIGIFIPSYGFEHVVMAVEKLRTD
                     ANEDIGLLLLD"
     gene            770..1750
                     /locus_tag="VIJ87_20720"
     CDS             770..1750
                     /locus_tag="VIJ87_20720"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF021616.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family A protein"
                     /protein_id="HEY5446837.1"
                     /translation="MQPQIPEQLDRSLVSEASISVVVPCYNHARFVESCLRSIFAQTL
                     RPAKLLVIDDGSKDDSTSIIESALRDCPFACELIARENRGLSATLNQALSLTDAHYFA
                     YLGSDDMWLSDFLAARVKLLDSRPSAVLGYGHTYFIDEKNKVVDCTADWADYKDGDVR
                     QMLLQTIGPMSPTVLYVREALARHGWNDKARLEDYELYLKLSLDGEFAFDPGVRSAWR
                     QHEKNASRNQQMMLDEHLSALQRLAPSFGIQQPELEKLIKNIRFNRAEDFLRIGDKRK
                     AAQLFFENLSGLQASRLLPIMGRFLLPYSAVSWMRQRKQSAAMRSYGALE"
BASE COUNT          451 a          452 c          451 g          474 t
ORIGIN      
        1 cgtccaacaa caacaacccg atgtcctcgt ttgcgtcggt tcgcagtttc tcaaccgcca
       61 tcacaacgtg ctcaaagccg taactaggaa taaaaatacc tatcgagcaa actcttttcg
      121 gatgtttgag gaaaccggcg agcctggctt ccgtctcgga gttgagttta atagttagcg
      181 agtcggaagt aatgttaacg agacttggga ttactgtgat cttcttcgtg accttgattt
      241 ctttcgtaag ccaatctctt aattcttcac taacagcaat gtattcgtcg atcgcggtca
      301 atgcccttct gaaccgtctt ttttgtgcag acgaaaagcc cgcgtagcgc gcaggcagag
      361 acccatcatt cacatgctta atccactcaa aacggagaag agacttagcg attaaccaga
      421 ttggaagtaa tattagattt ggatactcga gatggaaatg agtgaagtca acgatgcgcg
      481 atttgtatcc ctgcttggca agagctttta gaacaccaag acggcggtga ttaaaacgcg
      541 tgattcgact gtcgtctgac tgcttaccaa atagcgccca cacaaaaatt ggtgagcctt
      601 ttaagtgctc aaacagagta ctcaagagca ctgaaactcc accatacgga ggcggtagtg
      661 gcccaaaaag aatgacgcgt ttactcatag caaactaaag tgcagacctt aactttggcc
      721 aatgcgttaa gcaactgctg acgcttacat tcaacttcgc gacctgatct tgcaacctca
      781 aataccagag caactcgatc gtagccttgt tagtgaggct tccatttcgg tcgtggtgcc
      841 ttgctacaac cacgcgaggt ttgtcgagtc gtgcctgaga tcgatttttg cccagacttt
      901 gcggcctgca aaactgctgg tgatcgatga cggatcaaaa gacgattcaa caagcattat
      961 cgagtcagcc ttgcgtgatt gtcctttcgc gtgcgaactg attgcaagag aaaaccgcgg
     1021 tttgtcagca acgctcaatc aggcacttag tctgacggac gctcactatt tcgcatacct
     1081 gggctcggac gacatgtggc tttctgattt tctggccgcc agggtaaagc tgctcgacag
     1141 tcgaccatcg gctgtcctgg gttacggtca tacttatttt atcgacgaga aaaacaaggt
     1201 tgtggattgt acggcagact gggcagacta caaagacggc gatgtccggc aaatgctttt
     1261 acaaactatc ggcccgatga gtccgacggt gttgtatgtt cgcgaagcgc tggcacgtca
     1321 tggttggaac gacaaggccc gactggaaga ctatgagctc tatttgaagt tgagtcttga
     1381 cggtgaattt gcctttgatc caggcgtgcg ttcagcctgg cgccagcacg agaaaaacgc
     1441 gagccgcaac caacagatga tgttggatga gcacttgtca gcattgcaac gactcgcacc
     1501 atcctttggc attcaacaac cagagttgga aaagcttatc aagaacattc ggtttaatcg
     1561 ggcggaggac tttcttcgga tcggcgacaa gcgaaaagcg gcgcagctct ttttcgagaa
     1621 cttgagcggc ctgcaagctt cgcgattgtt acccataatg ggtcgctttc tgcttcctta
     1681 ttctgcggtg tcctggatgc gacagcgcaa acagtccgct gcgatgcgca gttatggtgc
     1741 gttggaatag ggttgtccta gcttaatctt ttgcggcctt gccccctctc ctgttcttct
     1801 gcggctttgc cgcctcccct tttccttt
//
LOCUS       DATCGC010002181         1521 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_199052, whole genome shotgun sequence.
ACCESSION   DATCGC010002181 DATCGC010000000
VERSION     DATCGC010002181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1521)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1521)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1521
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199052"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..395
                     /locus_tag="VIJ87_20725"
     CDS             <1..395
                     /locus_tag="VIJ87_20725"
                     /inference="COORDINATES: protein motif:HMM:NF013232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446838.1"
                     /translation="YLCMEGPAFSSVAESNVYRSWGMDIIGMTNLQEAKLAREAEICY
                     ATLALVTDYDCWHPSHDAVSVETVIEYLNKNVRNAQTIMRESVRRLKGTERTCKCGSA
                     LKNAIFTPRELWPEATTKKLEAIIKKYQ"
     gene            422..892
                     /gene="bamD"
                     /locus_tag="VIJ87_20730"
     CDS             422..892
                     /gene="bamD"
                     /locus_tag="VIJ87_20730"
                     /inference="COORDINATES: protein motif:HMM:NF024915.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HEY5446839.1"
                     /translation="MRNKFVLLSFLFCAVLVSASAVYGQGGVKSGPDPSTMRDPDLEK
                     DSLHNLEVARNYYKLKKAYVAALRRCEEIIAGNPNFAKIEEVLLIAGRSSLSLADSKG
                     KQAPSLYNKSTTPEQFRDMGRDYLTKLTKEYPNSPFAKEAEDELRALGAAKPNP"
     gene            967..>1521
                     /locus_tag="VIJ87_20735"
     CDS             967..>1521
                     /locus_tag="VIJ87_20735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446840.1"
                     /translation="MSLLVVGSVAFDAVETPFGKCDQMLGGSASHFSISASFFTNVSI
                     VGVIGGDFTDADGEVFKQHNINTRDLERIPEGKTFRWRGRYDYDLNVAHTLETQLNVF
                     AEFKPKLSEESKSSRLLFLGNIQPDLQREVREQMPNAELVALDTMNLWIENTRDSLLK
                     TIKGVNVVIINDAEARQLTNIPNLI"
BASE COUNT          415 a          357 c          398 g          351 t
ORIGIN      
        1 cctatctctg catggaaggt ccggcgtttt cgagtgtggc agagtcgaac gtgtatcgtt
       61 cgtggggcat ggacatcatt gggatgacaa atctccagga agcgaagttg gcgcgcgaag
      121 cggagatttg ttacgcgacg ctggcattgg ttactgacta cgattgctgg catccgagtc
      181 acgacgcagt tagcgtagag actgtgattg agtacctgaa caaaaatgtt cggaacgctc
      241 aaacgatcat gcgcgagtct gttagacgat tgaaaggcac agaaagaacg tgcaaatgcg
      301 gttcggcctt gaagaatgcc atttttactc cgcgggaact ctggcccgag gcgacaacta
      361 agaagctgga agctatcatc aaaaagtacc agtaagcatt aaatcggtag tgaggtaaga
      421 gatgaggaat aagttcgttt tactgtcgtt tctattctgt gccgttctcg taagtgcgtc
      481 ggcagtttac ggccagggcg gggtcaaaag tggtcccgat ccatccacaa tgcgtgatcc
      541 cgatctggag aaagactcgt tacacaacct tgaggtcgct cgaaactact acaagttgaa
      601 gaaggcctac gttgccgcgc tgcgacgctg tgaagaaatc atcgccggca atcccaactt
      661 tgcgaagatc gaagaagtat tattgattgc tggtcggagt agtctctcgc tcgccgatag
      721 taaaggtaag caagctccgt cgttatacaa caagtcgacg acgccggagc agttccgcga
      781 tatgggccgc gactacctaa cgaaattaac taaagagtat ccgaacagtc cttttgcgaa
      841 agaagcggaa gacgaactgc gcgccttagg cgccgctaaa cctaatccgt agtgcgctgc
      901 ggtttgaaga aacaaagttc aaagtacaag ctctaagaaa ccaacaccaa aactagacca
      961 aaaattatgt cccttttagt agtcggttct gtggcgttcg atgccgtcga aacgcctttc
     1021 ggtaagtgcg atcaaatgct cggcggatcc gcttcacact tttcaatctc agcaagcttt
     1081 tttacgaacg taagtatcgt gggtgttatc ggtggtgact ttaccgacgc cgacggtgag
     1141 gtattcaaac aacacaacat taatactcgc gatctcgaga ggattcctga agggaagact
     1201 tttcgctggc gaggacgtta tgactacgac ctcaacgttg cccatacact cgaaacccag
     1261 ttgaacgtgt ttgccgagtt caagccaaag ctgtctgaag aatcaaaatc gtcgcgactg
     1321 ttgttcctgg gaaacatcca gcctgatctc cagcgcgaag ttagagagca gatgcccaac
     1381 gccgagttag ttgcgctcga cacgatgaac ctgtggatcg agaatacgcg cgattcgttg
     1441 ctgaaaacga tcaaaggcgt caatgttgtg atcatcaacg acgctgaggc gcgtcagtta
     1501 accaacattc cgaacctgat a
//
LOCUS       DATCGC010002182         2444 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_98795, whole genome shotgun sequence.
ACCESSION   DATCGC010002182 DATCGC010000000
VERSION     DATCGC010002182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2444)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2444)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2444
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98795"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..544)
                     /locus_tag="VIJ87_20740"
     CDS             complement(<1..544)
                     /locus_tag="VIJ87_20740"
                     /EC_number="2.7.7.41"
                     /inference="COORDINATES: protein motif:HMM:NF013327.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HEY5446841.1"
                     /translation="MNKSTPNKPPVKNSGLTRVLTAVVVLPFLIASILIPWLKWLFVA
                     MAGAAMALGLFEFYVLSKRLQLKPDTSAGFLGAIGIFVVSLYFGDIAVNLLLTQLVLI
                     VLTAGVLIAAALRGTDFEKMIASAGATVLGVLYIALLGSHLLSIRMGFTQLLSAHLLS
                     FFFLILMGADAGAYYTGRAIG"
     gene            complement(653..1444)
                     /locus_tag="VIJ87_20745"
     CDS             complement(653..1444)
                     /locus_tag="VIJ87_20745"
                     /inference="COORDINATES: protein motif:HMM:NF011405.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenyl transferase"
                     /protein_id="HEY5446842.1"
                     /translation="MLSDFAGVVKKGTREEALLSSIAWDRLPRHVAIIMDGNGRWAAQ
                     RGQPRIAGHKAGVEAVRAAVDTGARLGLQALTLYAFSTENWKRPRYEVDALMRMLRRY
                     LRIELDEIDRQNIKFQTIGRTGALADNVRSEIARATERTAKNKGMVLTVALNYGGRAE
                     IVDACRAAVRRLLDEGSRPDELTEERIANELYTRNLPELDLLVRTSGELRISNFLLWQ
                     SAYSEIHVTDTLWPDFRREQMFEAVVDYQGRDRRFGGLKLVVGRK"
     gene            complement(1545..2297)
                     /gene="truA"
                     /locus_tag="VIJ87_20750"
     CDS             complement(1545..2297)
                     /gene="truA"
                     /locus_tag="VIJ87_20750"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HEY5446843.1"
                     /translation="MNYKLLLQYDGTDFHGWQIQAELRTVQGELTRALSLIEGKDVTV
                     HGSGRTDAGVHAEGQVASVSLERPITARKLRAAINGNVGKDLRALQVDEVDDSFHARY
                     SALGKTYLYCLINAPVISPFWVRYAHHDARPMDIELMRSVAELFLGEHDWTAFSAAQS
                     DVEDRRRKITALEISERLDHRSGGRMIELQVSADGFLRYMVRSIAGTLMAVGRGELIS
                     EDVRRAIEDGVRPTEAVTAPACGLTLVSVRYQ"
BASE COUNT          609 a          674 c          596 g          565 t
ORIGIN      
        1 taccaatagc gcgaccagtg tagtaagccc cggcatcagc acccatcaag atcagaaaaa
       61 agaaagatag aagatgcgct gacaacagct gtgtaaaacc cattcgtatt gaaaggaggt
      121 gactacccag gagggcgatg tacaaaactc cgagcactgt tgcaccagct gaggcaatca
      181 tcttttcaaa gtcagttccg cgaagcgctg cggcaatcaa aacacctgcg gtcaggacaa
      241 tgagcacgag ctgagtcagt aataagttta ctgcgatatc accgaagtaa agtgacacga
      301 caaagatgcc gatagcaccg aggaaccctg cgctcgtgtc gggtttgagc tgaagacgtt
      361 ttgaaagtac atagaactca aaaagcccta gcgccatcgc ggctccagcc atcgcgacaa
      421 agagccactt taaccagggg ataagaatcg aggcgataag aaaaggaaga acaacgacgg
      481 cagtaagaac gcgcgttagc ccggagtttt tcactggcgg tttattgggt gtggacttat
      541 tcaagtcgta tgtccgatat gcttcagctt gtcgttgtct cgaaatacta attacaaatc
      601 cgcagcctga ttgaagtgtt tgttcaacga caagctaaag cacatcggac attcacttcc
      661 ggccaaccac caacttcaat ccgccgaacc ttcgatcgcg tccttgataa tcaaccaccg
      721 cctcgaacat ctgttcgcgt ctgaaatccg gccaaagcgt atcggttaca tgtatctcgc
      781 tgtatgcact ttgccacaat agaaaatttg atattcgcaa ttcaccgctc gttcttacta
      841 acaaatccag ttcggggaga ttgcgtgtgt agagttcatt ggcgatccgt tcctcagtca
      901 gttcatccgg acgactacct tcgtccagca gtcgacgcac agcagcacga cacgcgtcga
      961 caatctcagc ccgaccgccg tagttaagcg caacggtcag gaccatgcct ttgtttttcg
     1021 ccgttcgttc agtggctcgc gctatttcgc tgcgaacatt gtcagcaagc gcacccgtgc
     1081 gaccgattgt ttgaaacttg atgttttggc gatcgatttc gtcgagctca atgcgcaggt
     1141 accgccgcag catccgcatc agcgcgtcga cttcatagcg gggtcttttc caattctcag
     1201 ttgagaacgc gtaaagcgtc agtgcttgca atcccagccg ggcgccagtg tcgacggcgg
     1261 ctctaactgc ttccacgcct gccttgtgtc cggcgattcg cggttgacca cgctgggcag
     1321 cccagcggcc gttgccgtcc atgatgattg cgacatgtcg gggcaaacgg tcccaggcaa
     1381 ttgaggaaag cagcgcttcc tcgcgcgtac ctttctttac aacaccagca aagtcagaaa
     1441 gcatatctgt agacggaaaa aatgaatgat gttggaacgt gagccattct tgtcggtatg
     1501 ttggtggctg tcaaatctaa gggcgtctcc ttggagtgcg cccgctactg ataacgtacg
     1561 ctcaccaggg tcagtccaca cgcaggcgcg gtcactgctt cagtgggtcg cacgccatcc
     1621 tcgattgcgc gccggacatc ttcgctgatt agttcgcctc gacctaccgc catcagcgtt
     1681 ccagcgatgg aacgcaccat gtaacgcaaa aatccgtcgg cactaacttg tagttcaatc
     1741 attcgaccgc cgcttcggtg atcaagtcgc tccgaaatct ccagagccgt gatcttgcga
     1801 cgtctgtctt ccacatctga ttgagctgca gaaaacgcag tccaatcatg ttcacccaga
     1861 aacaattcag ctaccgaccg cattaactcg atgtccattg gcctggcgtc atgatgcgcg
     1921 taacgaaccc aaaaaggcga gatcacgggt gcgttaatga gacagtaaag gtacgtcttt
     1981 ccgagtgcgg agtaacgggc gtggaagctg tcgtctactt catcaacttg taaagcccga
     2041 agatccttac caacgtttcc attgatagcg gcgcgaagct ttcgcgctgt aatcggtcgc
     2101 tcaagcgaga cactggcaac ctgtccttcc gcatgaacgc cggcatccgt gcgacccgaa
     2161 ccgtgaacgg tcacgtcctt cccttcaatg agcgacaagg cacgcgtcaa ctcgccctgg
     2221 acggttcgca gttccgcttg gatctgccat ccgtggaaat cagttccgtc atattgcaga
     2281 aggagtttgt agttcaatgc cctaaatgat ctcagatctc atatttcaga tctcaaatcc
     2341 aatgcctgaa acagccttcg tctaaaatct gaaattatct gagagctgag atttgagatc
     2401 tgagatcatt tcgtcttcct acttcccggc ttcaccaccg ggtc
//
LOCUS       DATCGC010002183         1154 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_464068, whole genome shotgun sequence.
ACCESSION   DATCGC010002183 DATCGC010000000
VERSION     DATCGC010002183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1154)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1154
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_464068"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..564
                     /locus_tag="VIJ87_20755"
     CDS             <1..564
                     /locus_tag="VIJ87_20755"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HEY5446844.1"
                     /translation="QIVKTRGKGVPETKQNKFPIVETYREHIDGRYWFPTYSYSDDEL
                     IFDSGDTLHLRMKVKYFDFTLARATLKVTEVGEEDAANANPTKGAPSKGVAKPVEMGQ
                     LNAKALTLPKAKYPEEARRLHASGKVNVRVVVDENGKVISAKATDGPPSLRAAAEEAA
                     LLATFAPTVQDGITVKVTGLLTYEFTP"
     gene            complement(566..>1154)
                     /locus_tag="VIJ87_20760"
     CDS             complement(566..>1154)
                     /locus_tag="VIJ87_20760"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEY5446845.1"
                     /translation="SAWLRLSGVRVRVHGLELLDPKQTYVFVSNHRSYLDTATVFVYV
                     GRRIGLLAKKELLKVPILGVGMGFVNVMAIDRTNRESALRTADDAVRRIQSGVSFAVF
                     VEGTRAKPGELLPFKKGAFYMATQAGVPVVPIAIRNSDVLMGKGIGEAKGGTIDMVIM
                     PPLSTVGVDSDQEIADLISTVRKSIATELETSTSE"
BASE COUNT          308 a          304 c          283 g          259 t
ORIGIN      
        1 caaattgtaa aaactagagg caagggtgtt cccgaaacga aacagaacaa attcccaatt
       61 gttgagactt atcgagaaca catcgatggc cgctattggt ttccgactta ctcgtattct
      121 gacgatgaac tgatcttcga cagcggtgac acgctgcact tgcgaatgaa agtaaaatat
      181 ttcgacttta ctctcgctcg agcaacgcta aaggtgactg aagtcggcga agaggacgcc
      241 gctaacgcaa atcccaccaa aggtgctcca tccaagggcg ttgcgaaacc ggtggagatg
      301 ggccaactga atgccaaagc attgacgctg cccaaagcga agtatccaga agaagctcga
      361 agactacacg cttcaggaaa agtgaacgtg cgtgtcgtag tagacgaaaa cggcaaggtg
      421 atttcagcga aagctacaga tggaccacct tctttgcgcg ctgcggccga agaagctgcg
      481 ctactcgcga cgtttgctcc aactgttcag gacgggataa ctgtgaaggt gacgggcttg
      541 ctaacttatg aattcactcc gtagcttact cagacgttga cgtctcgagt tcggtcgcaa
      601 ttgacttgcg aacggtgctg atgagatcag cgatctcctg atctgagtcc acgccaactg
      661 tcgataaagg cggcatgatt accatatcaa tagtgccgcc ttttgcttcg ccgatacctt
      721 ttcccatcaa cacatctgaa tttctgatcg cgattggcac taccggtaca cctgcttgag
      781 ttgccatgta gaatgcgccc ttcttaaaag gaagcaactc cccgggcttc gcccgcgtgc
      841 cttcgacaaa aactgcgaac gacacaccgg attgaatacg tcgaacggcg tcgtcggcag
      901 ttcgaagggc gctctcccgg ttagttcgat caatcgccat tacgtttacg aaccccattc
      961 ctacaccgag gatcggaact ttcagcaact cctttttcgc aagtagcccg atccgacgtc
     1021 cgacgtatac aaacacagtg gcggtgtcga gatatgaccg gtgattagaa acgaagacat
     1081 aggtttgttt tggatccaac aattcaagac cgtggactcg aactcggacg ccactcagcc
     1141 gcagccatgc actt
//
LOCUS       DATCGC010002184         1078 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_131633, whole genome shotgun sequence.
ACCESSION   DATCGC010002184 DATCGC010000000
VERSION     DATCGC010002184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1078)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1078
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131633"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            259..>1078
                     /locus_tag="VIJ87_20765"
     CDS             259..>1078
                     /locus_tag="VIJ87_20765"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5446846.1"
                     /translation="MLSTLKQNIAYSLRTFGRNKRFTLTAVLTLALGIGATTAIFSVV
                     YAVFEPMPYPKPNQLVIVWSKGRGGRNPVAGTDFLKWQERSTSFQSMNGWNGVSFNVA
                     TNEKPEQVTGSRRTPGFFTMEGLPMLMGRDFVPEEGQPGKDHVVVLSNRLWSTHFGAD
                     RNIVGKQIRMNSEPYTVVGVLPPGIYDRFNSQFWVPMFIDTNPLSRDVRFMTVMARLK
                     DGVSIERAQAEMDGIVRQLQTENPKVNANLSVSVEPLHLDFVTDKTRRNLWLLLG"
BASE COUNT          260 a          254 c          294 g          270 t
ORIGIN      
        1 tggctgcctt tgccttaatg agattgctgc gcaccttgtt gtttggagtt acgaccacag
       61 acgtcgttac ttacgtcgct cttgcagctg ttttagcaat agttgcgctg ctggcttgtt
      121 acatcccggc gcgacgagca acgaagatcg atccgttggt ggcgctgagg tacgaatgaa
      181 gagatttcaa atttcagatt gcggcgacat tcacagcgca aagtctgcaa tctgcaatct
      241 gaaatagcga gggatttcat gctcagcact cttaagcaaa atatagctta cagcttacgc
      301 acatttggta ggaacaaacg tttcacgctc actgcggtgt tgacactcgc gttgggcata
      361 ggtgcgacga ctgccatatt cagcgtggtc tatgcagtgt ttgagcccat gccttatcca
      421 aagcccaatc aactggtcat tgtgtggtcc aaaggacgcg gcggacggaa cccggtggcc
      481 ggtaccgatt ttctaaagtg gcaggaacga agcacgtctt tccagtcaat gaatggctgg
      541 aacggcgttt cgttcaacgt ggcaaccaat gagaaacctg agcaggttac aggttcaaga
      601 cgtactcctg gttttttcac catggaaggt ctgccgatgt tgatgggacg agattttgtt
      661 cctgaagaag ggcagccggg gaaagaccat gtagtagtgc tcagcaatcg attgtggagt
      721 actcatttcg gtgctgaccg caacatcgtc ggtaagcaga tccgaatgaa cagtgagccc
      781 tacacagtag ttggtgtcct tccaccaggt atttacgatc gtttcaattc gcagttctgg
      841 gtgccgatgt tcatagatac gaacccactc agtcgcgacg ttcgcttcat gacagtgatg
      901 gcccgattga aggacggcgt ttcgattgaa agagcccagg cagagatgga cggaatcgtc
      961 cggcagttgc agaccgaaaa cccaaaagtc aacgcaaatc tgagtgtgag tgtcgagcca
     1021 ttgcatcttg acttcgttac cgataagacg cgccgcaatc tttggctgct gctgggtg
//
LOCUS       DATCGC010002185         1513 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_298762, whole genome shotgun sequence.
ACCESSION   DATCGC010002185 DATCGC010000000
VERSION     DATCGC010002185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1513
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298762"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(257..1009)
                     /locus_tag="VIJ87_20770"
     CDS             complement(257..1009)
                     /locus_tag="VIJ87_20770"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5446847.1"
                     /translation="MSKRILIIDDEENIRRVTRLTLQAAGYEVGEASDGQSGLELFGD
                     GSNWEAVLLDQRMPGMDGLETLRHISERDSTARVIMATAYASIELAVDAMKLGATDFV
                     RKPMTPEILRNAVAAALSKGNRVRDKDASQQREASSTGPLIQIITMNGFTILDSEDLR
                     HEPNERRFVVKSPTGTEHEVLVLIDDEAVGYVERMTRRRLPPENSFWTGQAERLLSDY
                     LWKEGKVPPTRILIIKDVDRDELPMAARWQSN"
     gene            complement(1006..>1513)
                     /locus_tag="VIJ87_20775"
     CDS             complement(1006..>1513)
                     /locus_tag="VIJ87_20775"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEY5446848.1"
                     /translation="RDLLDLSKIEAGESQPQLATVNARCLLLTALKDLRPQVEAKGLK
                     LTVDAPSDLPSVSVDKLQIERVLNNLVTNALRHTTDGEINISAERRDNHVAISVHDTG
                     EGIPVEYLPRIFDKFVQVPDSRSGRAGLGLTISKSIVEAHGGQISVQSQNGHGTTFTF
                     TLPTGVGK"
BASE COUNT          325 a          403 c          370 g          415 t
ORIGIN      
        1 aagaaaaaac agcaagcgcc gtctttttcg ttagacgctc atgggccgct tgttccgtac
       61 gaagtgcgcg accgatgata aagcgtttga gttctgctgc cacgtttttc tccgttattg
      121 tccaacctgc gaagcagttg gaagcataga gcccggggtg tcagccccag gagattcggg
      181 taaattcatt tgagcccatg aaacgtgcca agctttatgc ttacacctgc ttcgcgagct
      241 gctgccaact aagtctctaa ttgctttgcc aacgtgctgc catcggcaat tcgtcacgat
      301 cgacatcctt aattatcagt attctggtcg gaggaacttt accttctttc caaagatagt
      361 cgcttaagag tcgttcggcc tggcccgtcc agaacgagtt ttcgggagga agtcttcttc
      421 ttgtcatgcg ctctacgtag cccaccgctt catcatcaat taggaccaac acctcgtgct
      481 cagttccagt cggactcttc actacgaagc gtcgctcatt aggttcgtgt ctcaggtctt
      541 ctgaatcgag gatcgtgaaa ccgttcatcg tgatgatttg aatgagcgga ccagttgaac
      601 tcgcttctcg ttgctgactg gcatccttgt cgcggacccg gtttccttta gaaagagcgg
      661 cggccacggc gttacgcaga atctccgggg tcattggttt ccgcacgaag tctgttgcgc
      721 caagtttcat tgcatcaacg gccagttcaa ttgaggcata tgctgtcgcc atgatcactc
      781 gtgcggttga gtcgcgttca ctgatgtgac gcaaggtttc gaggccgtcc atgccgggca
      841 ttctctgatc caacaacacg gcttcccaat ttgaaccgtc gccaaacagc tccagaccac
      901 tctgaccatc acttgcttca ccaacttcgt atccagccgc ttgaagtgtc aaacgcgtta
      961 cgcgtcgaat attttcttca tcgtcgataa ttaagatccg tttgctcatt ttccaactcc
     1021 agtaggcaat gtgaaggtaa aggtggttcc atgaccgttc tgcgattgaa cgctgatttg
     1081 accgccatgc gcttctacta ttgattttga gattgtcaga cccaggccag ctctgcctga
     1141 ccgtgaatca ggaacttgta caaacttgtc gaagatgcgc ggtaggtatt caaccgggat
     1201 tccttcaccg gtgtcgtgca cggaaatggc tacgtgattg tcacgtcgtt cggcgctgat
     1261 attgatctcc ccgtcagttg tatgtcggag agcgttggta acgaggttgt ttaggactcg
     1321 ctctatctgc aacttatcaa ctgagacgct gggcagatca ctcggtgcat caactgttaa
     1381 cttcaaccct ttcgcctcta cttgcggacg taaatccttc agggcggtca gcagcaaaca
     1441 tctcgcgtta actgtggcca gttgcggttg gctttcaccg gcctcaatct ttgaaaggtc
     1501 caggaggtca cgc
//
LOCUS       DATCGC010002186         1734 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_232066, whole genome shotgun sequence.
ACCESSION   DATCGC010002186 DATCGC010000000
VERSION     DATCGC010002186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1734)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1734)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1734
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232066"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1629
                     /locus_tag="VIJ87_20780"
     CDS             <1..1629
                     /locus_tag="VIJ87_20780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446849.1"
                     /translation="AKLGAAPSNTLKWVEGDVFKNDYTKIMPSVGFAWDPFKTGKTSI
                     RANYRLASDRIATFLFGSFIFQSTPGNNVAVSNPTFGPGGGLYRNIGPVIGALTPAQT
                     PSQLQQPGPISTNSLSVVDPDLQFPQVHEWSASFQREFKDNVLEVNYIGKHAVHLLGG
                     YNVNQVNIFARVPGVNESFLEAFNTVRASSTANSPLLNLLFTGNATNNAGTATFRTVA
                     TANTINLGNVASAALAVSQRLCQSSDVTAGVCTSTAQQLIGRTVSNPFLFQSYPQFSG
                     GLNVFDSSDYSRYDALQVIFKRRISRGLGFQFAYTLSKSKDNRSWDPALSSVSTGSVQ
                     AASSTPFDLRDRSINYTWSDFDRRHVFQGTYTYDLPFGKNQQFLNTSNAVVNQIVGGW
                     LFSGTIIKQSGRPFTVYSGLNTLSNVVQSTADCNSCDRHMGSLVNESGRNFWFDSSDR
                     AKFSAPVPGSIGNTGRNFFIAPVYFQWDASLSKKWKLTEKLAFDFRVDARNVLNKPSF
                     DNPTAVINSAIFGRINDSVTNNARRIQFSGKLSF"
BASE COUNT          414 a          450 c          413 g          457 t
ORIGIN      
        1 gctaaactag gggctgctcc atcaaacact ttgaagtggg ttgagggtga cgtcttcaag
       61 aacgactaca ccaagataat gccgtcggtc ggtttcgcct gggatccctt taagacgggt
      121 aaaacgtcaa ttcgtgccaa ctatcgactg gcttcggatc gaatcgccac tttcttgttc
      181 ggttcgttca ttttccaaag tactcccgga aacaatgttg cagtttcgaa ccccacgttt
      241 ggcccgggcg gcggtctata cagaaatatt ggaccagtta ttggtgctct gacacctgct
      301 cagactccgt cacagttgca gcagcctgga ccaatcagca ccaactctct gagcgtcgtc
      361 gatcctgacc tacagttccc gcaagtacat gaatggtcag ccagtttcca gcgagagttt
      421 aaggacaacg tcctggaagt taattacatc ggcaagcacg ccgttcacct cttaggtgga
      481 tacaacgtta accaggtgaa tatcttcgcg cgtgtacctg gtgtgaacga aagcttcctc
      541 gaggcgttca ataccgttcg cgcaagtagt acagcgaaca gtccgttatt gaatctgctt
      601 tttaccggaa atgcgaccaa taatgctggt actgcaacct tccgcacggt tgcgactgca
      661 aacacaatca atctaggcaa cgttgcttca gcagcgctcg ccgtttcaca gcgactctgt
      721 cagtcaagcg acgtcacggc tggagtctgt acctccaccg cccaacagtt aattggcagg
      781 accgtaagca acccattcct attccaatcg tatccacagt tttcgggtgg actcaatgtt
      841 tttgatagca gtgactattc ccgttatgac gctttgcagg tgatcttcaa acgcaggatc
      901 agtagaggtc tgggattcca gttcgcctac acgctgtcga agtcgaaaga taaccgctca
      961 tgggatcccg ctctaagcag tgtctcaaca ggatccgttc aggctgcttc gagtacgcct
     1021 tttgatctca gagatcgaag catcaattac acctggtccg acttcgatcg acgtcacgta
     1081 ttccagggta cgtacactta cgatcttccg tttggaaaga accagcagtt cctgaatact
     1141 tcgaacgccg tcgtgaacca gatagtgggt ggctggttgt tctctggaac aatcatcaaa
     1201 cagtcgggtc gaccgttcac tgtctactcg ggacttaaca ctttgagcaa tgttgtccag
     1261 tcaactgccg attgcaacag ttgtgatcgc cacatgggaa gtttggtaaa tgagagtggt
     1321 agaaacttct ggttcgactc ttcggatcgc gccaagtttt cagcgccggt acccggctcg
     1381 attggcaaca ctggtcgcaa cttctttatt gctccagtct acttccagtg ggatgcatcg
     1441 ctctccaaaa aatggaagtt gactgagaag ttagcgttcg atttcagagt tgatgcacga
     1501 aacgtgctca acaaaccttc ctttgataat ccgaccgctg ttattaactc ggccattttt
     1561 ggtcgcatca acgactcggt tacaaacaat gctcgcagaa ttcagttctc cggaaagctg
     1621 agtttctaac gagttaactt aagggcacat cgatttgatg aaactgtgtt gtcgactgct
     1681 gctgttggtg tggcttctcg ccgcaccagc agctgttttt catcctgggc agtc
//
LOCUS       DATCGC010002187         1531 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_496601, whole genome shotgun sequence.
ACCESSION   DATCGC010002187 DATCGC010000000
VERSION     DATCGC010002187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1531)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1531)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1531
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_496601"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            60..662
                     /locus_tag="VIJ87_20785"
     CDS             60..662
                     /locus_tag="VIJ87_20785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446850.1"
                     /translation="MSERLAQSLLLGGLILLLVEGVQAEPPQDPIYVKTSTGWNAAYG
                     HDNEYAEFHVIGNGAKLQDPYHILLQKGVGMMVSFVDKKELQNDGDLLSAHAQWEIDY
                     WHQRASRVESNTREDLTGTRKDVKVTEINVYNDKGAQTSSYLIGLAAKDGVFALSVSS
                     PAKKGVAPLVKELVSSFKLVPRNLDAEEVKKLSSEAKAQR"
     gene            701..>1531
                     /locus_tag="VIJ87_20790"
     CDS             701..>1531
                     /locus_tag="VIJ87_20790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NHL repeat-containing protein"
                     /protein_id="HEY5446851.1"
                     /translation="MKKLFVAVTIACFGIILASITAQAGRLAFDAAGNLFVADGHSIF
                     KFTPDGERSIFAAGLRIPTDLVFDSRGDLFVSDLGQKSIFTFTSDGKKKTLATASKVF
                     SMVIDRLDNLYVSDGDSISKFTPDGNKSPFATGIDTFEMVIDGSDNLYFSRGDSIFKF
                     TPDGKESRFATVHSPNDMAFDGAGNLFVADRDNRSILKLAPEGTQSAFASEIKANELV
                     FDKAGNLFVSTGDSIFKFAPDGNRSWFTGLNISPDMRWECQEPDDETGPKIVKAGTKE
                     A"
BASE COUNT          414 a          358 c          399 g          360 t
ORIGIN      
        1 caaaaaggcc gattactctt tctacggtga gctcggcgcg ccggtgccgg agtagcaaaa
       61 tgagtgaacg tcttgctcaa tcgttactgc tgggggggct catactccta ctagttgaag
      121 gtgtccaggc agaacctccc caagatccaa tctatgtgaa aacttccact ggctggaatg
      181 ccgcgtatgg acacgataac gagtacgctg aattccatgt aatagggaac ggcgcaaaac
      241 ttcaggaccc ttatcatatc ctgctacaaa agggtgttgg aatgatggtt tcctttgtcg
      301 ataaaaagga gcttcaaaac gacggggatt tgttgagcgc tcacgctcaa tgggaaatag
      361 attactggca tcaacgtgcc agcagagttg aaagtaacac ccgggaagat ctaacaggaa
      421 caagaaagga cgttaaggta actgagataa acgtgtacaa cgacaaaggc gcacagacgt
      481 catcttattt gatcgggctt gccgcgaaag atggggtttt tgccctttca gtttcctcac
      541 cagcaaagaa gggtgtagct ccgttggtaa aagaattggt cagctcgttc aaacttgtgc
      601 ctcgaaactt ggatgcggaa gaagtgaaga agctgtcatc ggaagccaag gcgcagcgtt
      661 aaacctacga ttaacagttt ccgagtaagt gagcattgaa atgaagaaat tatttgtagc
      721 ggtaacaatc gcctgcttcg gaataatttt ggcctccatt accgcccagg ccggcaggct
      781 ggcctttgac gcagccggta atctctttgt agcggatggt cattcgatct tcaaattcac
      841 acctgatggc gagaggagta ttttcgcggc aggccttagg atcccgacgg acctagtctt
      901 tgatagtaga ggggatcttt ttgtatcgga cctcggccag aagtccatct tcacattcac
      961 atcggacgga aagaagaaga ccttagccac agcgagcaag gttttcagca tggtcattga
     1021 tcgtttggac aatctttacg tctcggacgg tgattcgatt tcaaaattca cgccggatgg
     1081 caacaagagc ccctttgcca cagggatcga caccttcgag atggtcattg atggttccga
     1141 caatctttac ttctctcgcg gcgattcaat tttcaaattc acgcccgacg ggaaggagag
     1201 caggtttgct accgtgcact cgcctaacga catggccttt gacggagcag gcaatctttt
     1261 tgtggcggat cgtgacaacc ggtcaatcct caaacttgcg cccgaaggta cccagagcgc
     1321 ttttgcctct gagattaaag ctaacgaact ggtttttgat aaagcgggca acctctttgt
     1381 gtccacgggt gactcaatct tcaaattcgc tcccgacgga aacaggagct ggttcacggg
     1441 actgaacatc tcgccagaca tgagatggga atgccaagaa cccgacgatg agacagggcc
     1501 gaaaatcgta aaggctggca caaaagaagc g
//
LOCUS       DATCGC010002188         1151 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_131723, whole genome shotgun sequence.
ACCESSION   DATCGC010002188 DATCGC010000000
VERSION     DATCGC010002188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1151)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1151)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1151
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131723"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1151)
                     /locus_tag="VIJ87_20795"
     CDS             complement(<1..>1151)
                     /locus_tag="VIJ87_20795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446852.1"
                     /translation="SWLVQLPRILSYEELKTLREQTPHVTRERMLRELAETIEIIATQ
                     IPFVLFLEDLHWSDYSTLDLISYMARRRPACSFMLIGTYRPVDVILNEHPLKGIKQEL
                     QLHRLCHELPLEYLTEESVAEFLNARFPSNSFPPRLAQLIHQQTEGNPLFMVNVIDYL
                     VDLNQIAEVEGCWTLTVLLTEVELRVPENIRHLIEKHIERLTETEQVVLEGASVVGMD
                     CSAVAIAAGLDIDVMEVEEICESLARRQHFLSPAYIAELPDGTITPRYRFIHALYLDV
                     LYKRVALTKRSQIHGRIGERGESIYGARAGEIAAELAVHFEQARDLNRAVKYLQIASE
                     NAQRCSANYESLELAERGLQLLSIMPESSERTLQEEVFSRRIATLKDTI"
BASE COUNT          299 a          286 c          285 g          281 t
ORIGIN      
        1 ttgatagtgt ccttgagcgt ggcaattcgg cgagagaaga cttcttcctg aagtgttctc
       61 tcggagcttt cgggcattat cgacaagagc tgcagacctc gctcagcaag ttcaagtgat
      121 tcgtagtttg cggaacagcg ctgtgcgttc tcagaagcaa tttgaagata cttcactgcg
      181 cgattcaagt cgcgtgcttg ttcgaaatga actgcaagtt cggcagcaat ctcacccgca
      241 cgcgcgccat agatcgactc gcctcgttca ccaattctgc cgtggatctg tgaccgtttg
      301 gtgagtgcga cgcgcttata caaaacatcc aggtacagag catgaatgaa cctatacctc
      361 ggtgtgattg tgccatcagg caattctgca atgtaggcag gcgataagaa atgctggcga
      421 cgcgccaggc tttcgcaaat ctcttcgact tccatgacat cgatgtcaag gcccgcagca
      481 attgcgactg ctgagcaatc cataccaaca acactggctc cctcaaggac aacttgttct
      541 gtttcagtga gccgttcaat gtgcttctcg attaggtggc gaatattttc cggcactctt
      601 agttcaacct cagtcaaaag cacagtcaat gtccagcagc cttcgacctc tgcaatttga
      661 ttgagatcga ccagatagtc gataacattc accatgaata gcggattgcc ttcagtttgc
      721 tgatgaatca gctgggccag cctcgggggg aaagaattag acgggaacct ggcattgaga
      781 aactcagcta cggattcctc agtgagatat tccaaaggca attcgtggca taggcggtga
      841 agctggagtt cttgcttgat acccttcagg gggtgttcgt tcaaaatcac atcaaccgga
      901 cgataggttc caatcagcat gaaactgcat gcaggacggc gacgcgccat gtaggagata
      961 agatccaggg tcgagtagtc actccaatgc aaatcttcca ggaaaagaac aaaaggaatc
     1021 tgcgtcgcaa taatttcgat agtctccgcc aactcgcgta acattcgttc acgagtaacg
     1081 tgcggggtct gctctctaag agtcttcagc tcttcatatg aaagaattcg cggcaattgc
     1141 accaaccagg a
//
LOCUS       DATCGC010002189         1930 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_496610, whole genome shotgun sequence.
ACCESSION   DATCGC010002189 DATCGC010000000
VERSION     DATCGC010002189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1930)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1930)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1930
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_496610"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..333)
                     /locus_tag="VIJ87_20800"
     CDS             complement(<1..333)
                     /locus_tag="VIJ87_20800"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate-forming enzyme family protein"
                     /protein_id="HEY5446853.1"
                     /translation="MTTFQNITSLLQDRVDAAPDKVFLFSQPDRRQFTYSQFADAVAR
                     TSALLAGEGVAKGDVVSLLMPNSVEYVIAYFACWRLGALAGPINSHLKEQEISYVVSN
                     SEAKALLVG"
     gene            479..>1930
                     /locus_tag="VIJ87_20805"
     CDS             479..>1930
                     /locus_tag="VIJ87_20805"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY5446854.1"
                     /translation="MTTYQNFINGKWVKSNSGKSVANINPGNTDDVIGDTPLATREEA
                     RMAVDAAAEAFRGWRSTPAPTRGRIVAKAARLFEDNKEELAQILTREEGKTIAESRGE
                     LQRSINVAEFCAGESRRLTGETIPSELPLNFAYTIKQPLGVVACVTPWNFPVAIPVWK
                     IAPALVAGNTVVFKPATITPGTAIRITEIFEEAGIPPGVLNLIIGSGSEVGDEIINHP
                     AVKAISFTGSNGVGIRLYEQASRRGAKVQCEMGGKNPVVILEDADMDLAVESTAQGAF
                     GSSGQRCTATSRAVVVDQIADEFVERVAKRADSMRIGIGSDPQTEMGPSVDESQFNTV
                     LNYINIGKEDGATLVCGGSRATGDGLDKGYFVRPAVFDHVTPDMRIAREEIFGPVLSV
                     LRVKDFEHAMQVANDCEYGLSSSIFSNDAARIFRFVDDIETGMTHINSPTTGGEAHIP
                     FGGTKGTGIGDREQGSTALDFYTELKVVYVDYTG"
BASE COUNT          506 a          479 c          500 g          445 t
ORIGIN      
        1 acccaccagc aatgccttcg cttcggagtt cgaaacaacg taactaatct cctgctcctt
       61 caggtgtgaa ttaatcggtc cagccaacgc accgagtcgc caacacgcaa agtaagcgat
      121 gacatactcg acactgtttg gcatcaacaa actaaccacg tcgccttttg cgactccttc
      181 accagctaac aacgctgagg tgcgtgcaac tgcgtcggcg aattgactgt aggtaaattg
      241 acgccggtca ggctgggaaa aaagaaagac tttgtcgggg gctgcatcaa cccgatcttg
      301 aagcagcgaa gtgatatttt gaaaggtggt catagtttga aaggtaagga taacctaaaa
      361 cacagctctt ggagactcaa agcatttcac agtgtgccgc ataaccatca cagtggctcc
      421 atgctatatt tgcgacgctt tatcagcagt tgattggcat taagcgggtg aactatcaat
      481 gactacctat caaaatttca ttaacggcaa gtgggtcaaa tcaaattctg gaaaatccgt
      541 agcgaacatc aatccgggaa acacagacga tgtaattggc gacactccat tggcaacgcg
      601 cgaagaggct cgtatggctg tggatgcagc tgccgaggct tttcgcggtt ggcgttcgac
      661 gcctgctcca acgcgcggaa gaatcgtggc caaggccgcg cggttgtttg aagacaacaa
      721 ggaagagctc gctcaaatac tgacgcgtga agaagggaag acgatcgcag agtcccgcgg
      781 agaattacaa cgctcgatca atgtcgccga attctgtgcg ggcgaatcac gacggttgac
      841 cggcgagaca atcccttcag agttgccact gaatttcgcc tacacgatca agcagcctct
      901 cggtgttgta gcttgtgtca caccatggaa ttttccagtt gcgatcccgg tttggaagat
      961 cgccccggca ctggttgcgg gcaacaccgt tgttttcaaa ccagcaacga ttactcccgg
     1021 caccgctatc cgcatcacag aaatcttcga ggaagcagga attcctccag gtgttttgaa
     1081 tttgatcata ggctcaggtt cagaagtggg tgacgaaata atcaatcatc cggcggtcaa
     1141 agccatctct ttcacaggat cgaacggcgt cggaattcgg ctctatgaac aagcatctcg
     1201 tcgtggggcg aaggttcaat gtgaaatggg cggcaagaat cctgtggtta ttctggaaga
     1261 cgctgatatg gatctcgcag ttgagtcaac tgcacaggga gcttttggat catccggaca
     1321 acgatgcaca gcaacaagtc gtgccgttgt agttgatcaa atcgctgacg aatttgtgga
     1381 acgcgttgct aaacgcgccg actcaatgcg catcggaatt ggttcggatc cacaaactga
     1441 aatgggaccc agtgtagatg agagtcaatt caatactgtg ctgaactaca tcaacattgg
     1501 taaggaagat ggcgctacgc tcgtgtgtgg cggttcgcgc gcaaccggag atggactcga
     1561 caaaggatat tttgttcgac cagctgtctt cgaccatgtc actccagata tgcgtattgc
     1621 tcgtgaagaa atcttcggac ctgtcttgtc tgtcttgcgc gtcaaagact tcgaacacgc
     1681 catgcaggta gccaacgatt gcgaatacgg attgtcgtcg tcgatcttta gcaacgatgc
     1741 cgcgcgcatc tttcgttttg tcgacgacat tgaaactggc atgacccaca tcaactcgcc
     1801 tacgacaggc ggtgaagcgc acattccctt cggtggaaca aaaggcacgg gcatcggcga
     1861 tcgcgaacaa ggttcgacgg ccctggattt ctataccgaa ctcaaagttg tctacgtcga
     1921 ttacactggt
//
LOCUS       DATCGC010002190         3984 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_428631, whole genome shotgun sequence.
ACCESSION   DATCGC010002190 DATCGC010000000
VERSION     DATCGC010002190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3984)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3984)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3984
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_428631"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1355)
                     /locus_tag="VIJ87_20810"
     CDS             complement(<1..1355)
                     /locus_tag="VIJ87_20810"
                     /inference="COORDINATES: protein motif:HMM:NF015859.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHASE domain-containing protein"
                     /protein_id="HEY5446855.1"
                     /translation="MSSSLPQPSQLRKRRRFLPYLILTLGLAFTFLVSFYFSKLAKAQ
                     DQSRFEKSVQEIDERITARLQTAEALLRAGTGLFAASDEVAPQEFDRFVQQIELQKNY
                     PGIQGIGFSKRLRPNEKADLIAKMRQTGFSDFKIWPESQRDEYNAIIYLQPMNNRNQV
                     AIGFDMFTEAVRRQAMETARDTGTPTASGRVILVQEPQPNQQSGFLIYAPVYRNGADT
                     STVDARRSALVGFVYSPFRIDDFIAPVLTDQKSDVSFKIYDGAEIKPESLLHDTPPES
                     AESHFTTSTIIKFSGRIWTIVYSSNPSFELTSSRAFLPYMFAAGLLLSLLFFAVTRAE
                     VQARGRAENAAAGLVESEATTRKTLTEREAAEEALRESEERYRELIENANDIVYMLDF
                     EGRITSINKAAEIMLGYSQQELLGMNIADVLASDSMTVGEQMMTSGHQRTNYEVEVVS
                     KG"
     gene            complement(1528..2853)
                     /locus_tag="VIJ87_20815"
     CDS             complement(1528..2853)
                     /locus_tag="VIJ87_20815"
                     /inference="COORDINATES: protein motif:HMM:NF024909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY5446856.1"
                     /translation="MKFTRYSKFKGFDVSSINLGELMDSMSDALLDSGYDNDYYWTRQ
                     RKQTDNSLDALRAALLQALMDKGILNEQQLREMLTENEGKFKGSLLEELLNQLIERLV
                     EEGYLNLREEQQQQRDDRRGQGNGQGEISEPLPRNVRFEVTEKGLDFLGYKTLRNLLG
                     SLGKSVSGRHDTVYLSTGVEAAAASKRYEFGDTINLDVNATLLSAIKREGLSVPLNLE
                     YQDLYVHQCDYQSSCATVVMLDCSHSMILYGEDRFTPAKKVALAMAHLIRTQYPGDSL
                     KVVLFHDSAEELPLGKLATTQVGPYHTNTAEGLRLSRRLLQAQRKEMKQIVMVTDGKP
                     TACYIGDSFQPSAAKTKASDTTPKRRLYKNSMGGDPFVMTETFKEVQACRKAGIMINT
                     FMLASDYYLVDFVKQMSAMTNGKAYFANPGNLSQFVLIDFLRRRTRKVR"
     gene            complement(2977..>3984)
                     /locus_tag="VIJ87_20820"
     CDS             complement(2977..>3984)
                     /locus_tag="VIJ87_20820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446857.1"
                     /translation="KGGHLLSDELTIHYGLLPRANRGVFAINELPDLAGKIQVGLFNI
                     MQEGDVQIKGYPVRLPLDVMLVFSANPEDYTARGKIITPLKDRIGSEIMTHYPKELQT
                     AVEITKQEAWTNRFADSDRIVIPDFIREVVEQIAFEARDDSHIDKHSGVSQRLPISAM
                     ESAVSNAERRSLLTGDRTIVPRIADIYAAIPSMTGKMELEYEGEQLGANSIARDLIKR
                     AAGEIFEGYFVGIDFTRAVQWFDEGNKLLLADTASAEECRTLVEAVPELIETALIPFD
                     FDRADSGRLVAACEFVLEGLYAENKISRNEEGGYAGMTKAKKDRRGMIYDDLTETGKY
                     S"
BASE COUNT          936 a         1030 c          996 g         1022 t
ORIGIN      
        1 cctttcgaaa ctacctcaac ctcatagttg gttcgttgat ggccagaagt catcatttgc
       61 tcacccacag tcatgctgtc agaggcaagc acatcggcga tgttcattcc cagcagctcc
      121 tgctgcgagt aacccagcat aatttcggcg gctttgttga tcgaggtgat gcgtccttca
      181 aagtcgagca tgtaaacaat gtcgtttgcg ttctcgatca actcgcgata tcgctcttcg
      241 ctttcgcgca aggcctcctc agcggcctca cgctcggtga gggttttccg cgtagtggct
      301 tccgactcga ccagccctgc cgcggcattt tcagccctgc cacgagcctg aacttcagca
      361 cgagtaaccg cgaagaagag caagcttaga agcagaccag ccgcaaacat gtaagggagg
      421 aacgctcgac tagacgttag ttcaaacgat gggttggagg aataaacaat ggtccagatg
      481 cgtccagaga acttgatgat agttgaggtt gtgaagtggg attcggctga ttcaggtggc
      541 gtgtcgtgaa gtagactctc tggtttgatc tctgctccat catagatctt gaaacttacg
      601 tctgatttct gatcagtcaa aaccggggca ataaagtcat caattctaaa aggactataa
      661 acaaaaccga ccaatgcaga gcgcctggca tcgacggttg aggtatcggc gccgttgcga
      721 tacacgggtg catagattag gaatccagac tgctgattag gttggggttc ctgaaccaga
      781 atcacacgtc ctgaagcagt cggcgtccct gtatcgcgcg cagtctccat cgcctggcgg
      841 cgcaccgctt cagtgaacat gtcgaaacca atcgcgactt gattgcggtt gttcatcggt
      901 tggagataga taattgcgtt gtattcgtcg cgttgagact cgggccaaat cttgaaatcg
      961 ctgaaacctg tttggcgcat cttcgcgatc agatccgcct tctcgttagg gcgaagtcgc
     1021 ttggagaaac caatgccttg aattcccggg tagttcttct gcaattcgat ctgttgcaca
     1081 aaacgatcaa actcctgcgg tgcgacctca tcgctagcgg caaacaaacc agtcccggcg
     1141 cgcagcaacg cctcggccgt ctgcagtcga gcggttattc gttcgtcaat ctcctggacg
     1201 gatttctcga atcgactctg atcctgggcc ttggccagtt ttgaaaaata gaatgagacg
     1261 agaaaggtaa acgcaagacc gagcgtgaga attaggtacg gaagaaacct gcgccgtttg
     1321 cgtagctgag agggctgggg aagagatgac gacattctat ttattgcaaa ttgcagattg
     1381 tcgagttcag atttgctgcg ttcgctagtt gggtcgagga aaatttcagc cgcagatcaa
     1441 cgcggatgac cactgatcag aaacttattt cggaattgga accggcttct ttctgcgttc
     1501 accgggggtg aacactgagc acaaatctca ccgtactttt cgtgtgcgac gccgcagaaa
     1561 atcaatcaag acgaattgtg acaagttgcc gggattggca aagtaagcct ttccgtttgt
     1621 catcgccgac atttgcttta cgaaatcgac caggtagtag tcactggcaa gcatgaatgt
     1681 attgatcatt ataccggctt tacgacaggc ctgaacttct ttgaacgttt ccgtcatcac
     1741 aaacggatcg ccccccatcg agttcttgta aaggcgtcgt ttaggtgttg tatcgcttgc
     1801 tttcgttttg gctgcggatg gttgaaaaga atccccgatg tagcaggcgg tcggtttgcc
     1861 atcggtgacc atcacgattt gcttcatctc tttccgctgg gcttgaagca ggcgtcgcga
     1921 caaacgcaga ccctcggcgg tgtttgtgtg atacgggccg acttgcgttg tggcgagttt
     1981 gccgagaggc agttcttcgg ctgaatcgtg aaataaaacg accttgagcg agtcacccgg
     2041 atactgggta cgaatcaagt gcgccattgc cagcgcaacc ttctttgccg gagtgaagcg
     2101 gtcctcaccg tatagaatca tagaatgtga acagtcgagc attacgacgg tggcacaaga
     2161 cgattggtag tcgcactgat gaacatatag atcctggtac tcaagattca gcgggacact
     2221 tagcccttct cgcttgatgg cagacaacaa agtagcgttc acatcaagat taatcgtgtc
     2281 gccaaactca tagcgcttac tcgcagccgc agcttccaca ccggtcgaaa ggtaaacggt
     2341 atcatgacgt ccggaaacgc ttttgccgag actgccgaga agatttcgca gtgtcttgta
     2401 tccgaggaag tctagacctt tttcggttac ttcaaaccga acgttacgtg gtaagggttc
     2461 ggaaatctcc ccctgaccgt ttccctggcc tcttcgatca tccctctgtt gctgctgctc
     2521 ttcacgaagg ttgagataac cttcttcaac cagtcgctcg atgagttggt tcagtaattc
     2581 ctctaacaga gatcctttga acttaccttc gttctccgtg agcatctcgc gaagctgctg
     2641 ctcgtttagg attcccttgt ccatgagcgc ctgaagcaaa gctgcacgta gtgcatcgag
     2701 cgagttatca gtttgtttcc tctggcgcgt ccagtagtaa tcgttgtcgt aacccgaatc
     2761 gagcagcgca tccgacatag aatccatcaa ctcacccagg ttgatggatg aaacgtcgaa
     2821 gcccttgaat ttggaatagc gagtgaattt cattactttt tgctggccgg ttcgggtatt
     2881 tgcaggtccc tgcaaatttt tcgggccaga aactcattta tctcacgatc gtctcgacac
     2941 tgctgaagca gttaatgtaa taggcatgaa tttctcctag ctatacttac cagtttcagt
     3001 aagatcgtcg taaatcattc cacggcgatc cttcttcgct ttagtcattc ctgcgtaacc
     3061 gccttcttcg tttcgactga tcttgttctc ggcgtaaagt ccttcgagca caaactcaca
     3121 cgcggcaacg agacgaccac tgtccgcccg atcgaagtcg aacgggatca aagcagtctc
     3181 gatcagttcg ggaacagcct cgaccagggt tcgacactct tcagccgaag ccgtatcagc
     3241 caacagcagc ttgtttcctt cgtcgaacca ttggactgct cgcgtgaaat cgattcccac
     3301 aaaatagcct tcaaagattt cgcccgccgc acgcttgatc agatcacgtg caatgctgtt
     3361 ggcgccgagt tgttcgcctt catactccag ttccatcttg ccggtcatcg aaggaattgc
     3421 agcgtagata tcggcgatgc gaggaacgat tgtgcggtct cccgttaaca gcgaccgtcg
     3481 ttcagcattc gatactgccg attccatcgc actaataggt aagcgttgcg agacaccgga
     3541 atgcttgtcg atgtggctgt cgtcgcgcgc ttcgaaagcg atttgttcca ccacttcgcg
     3601 aatgaagtct ggaataacta ttcgatcgga atccgcaaac ctattagtcc acgcttcttg
     3661 ttttgtgatc tcaaccgccg tctgaagctc tttcggatag tgagtcatga tttcagaccc
     3721 gattcgatcc tttagcggcg tgatgatctt tccacgcgcc gtgtagtctt ccggatttgc
     3781 cgagaacacg agcatcacat cgagaggtag gcgcaccggg taacccttaa tctggacatc
     3841 tccctcttgc atgatattga agagtccgac ctgaatcttc cctgctaagt ccggaagttc
     3901 gttgatcgca aacactccac ggttagcgcg cggcaaaaga ccgtagtgga tcgtcaactc
     3961 atcactcaaa aggtgaccac cctt
//
LOCUS       DATCGC010002191         1748 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_496631, whole genome shotgun sequence.
ACCESSION   DATCGC010002191 DATCGC010000000
VERSION     DATCGC010002191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_496631"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..484
                     /locus_tag="VIJ87_20825"
     CDS             <1..484
                     /locus_tag="VIJ87_20825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446858.1"
                     /translation="ALSEAMIDSSKDTAQVEQLQERIAEKESLEQSISGLQSQVDNLN
                     ALTSPKPEDVANRDSRNRELQENRTRLAQLSDNIQALSRPTSANVSVNFLRDILSDSS
                     GYSFHRFQIFAWTIVLGIIFVSAVYNNLNMPEFSGTLLGLMGLSSGTYIGFKFPEKKE
                     "
     gene            617..>1748
                     /locus_tag="VIJ87_20830"
     CDS             617..>1748
                     /locus_tag="VIJ87_20830"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY5446859.1"
                     /translation="MKSVTMISWELDPFHTRGGTAYAIRRLADQLTELRIQTRVLLPD
                     WLDTCPGKHLPPFLMPMLLKMRPELQHAPREVQYSEFCRAALDAVEQIKSNDGSDAVV
                     AHSLEGAMFFILRSGRRSCESSVFWLHSLYDLQINDFQKGKRQTLPYRSLLACAVTMA
                     DIVVTSAGILKDAREFEWPESLKELQKALTLASSENRVLTVESMGCLPKAPNDLQNEM
                     IHSSNLENLKDVPSPYVLFPGRPTIDKGFGIFAAIAERLRTENIACVAVQRPKQREVA
                     ANISRSSPIHWIPWLAQDELLIAMRNAACTVLPSITEGFGLAAAESISQGVTTLYQQV
                     GGHHGLPSMPNALPVPLTTTERAHLYGLWSELIGIDDFWPVWT"
BASE COUNT          407 a          456 c          456 g          429 t
ORIGIN      
        1 agctcttagc gaagccatga tcgattcgag taaggatacc gcgcaggtgg aacagctaca
       61 ggagcgcatt gcggaaaaag agtctctcga acaaagtatt tccgggcttc agtcgcaagt
      121 tgacaatctc aacgccctga cttcgccaaa acctgaagac gttgccaatc gtgacagccg
      181 gaaccgagag ctacaggaga accgcacacg cttggcccaa ctctctgaca acatccaggc
      241 tctctctcgg cccacatccg cgaacgtttc ggtcaacttc cttcgagaca ttctctcgga
      301 ctccagcggt tatagctttc atcggtttca gatttttgcc tggacgattg tgctgggaat
      361 catatttgtc tcggcggtct acaacaatct caacatgccg gagttcagcg gtactttatt
      421 agggctgatg ggcctcagtt cgggtactta tataggcttc aagtttcccg agaagaaaga
      481 atagccagtg acggtgcgtt acttgatgtt agacttcagc aattcgactc ggtaaattcg
      541 cacaaagcct cccgtattcc actgtgcctt gattctgctt cagactgttc gatcatttct
      601 tcgacgagtg atgattgtga aatcggtgac gatgatctcc tgggagttag atccgtttca
      661 tacacggggc ggcactgcgt acgcgattcg acgcttggct gaccagttga cggagctgcg
      721 gatccaaacc cgagttctct taccggattg gctggacacg tgtcccggga agcacttgcc
      781 gcctttcctg atgccgatgc ttttgaaaat gcgacccgaa cttcaacacg ctcctcgaga
      841 ggtgcaatac agtgagttct gtcgcgcggc gcttgatgca gtcgaacaga ttaagtccaa
      901 cgatggatca gatgccgtcg ttgctcatag tctggaaggc gcaatgtttt tcattctgcg
      961 aagcggaagg cgatcctgtg agtcatcagt tttttggctc catagtcttt acgacctaca
     1021 gatcaatgac ttccagaaag gaaaacgcca aacactgccg tatcgatcct tgcttgcctg
     1081 cgccgttacg atggccgaca tcgtcgtaac gagcgccggc attttgaagg atgcgcgaga
     1141 gtttgagtgg cctgagtcgc tcaaagaatt gcagaaagca ctcacgcttg cgtcgtctga
     1201 gaatcgagtg ttgaccgtcg aatccatggg ttgcctgccg aaagccccaa atgacttgca
     1261 gaatgaaatg attcacagtt caaacctgga gaatctcaaa gacgtgccct caccctatgt
     1321 tctgtttcca ggccgaccga cgatcgacaa agggtttgga attttcgcag cgattgcaga
     1381 acgattacga acggaaaaca tcgcgtgtgt ggcggtgcag cggcccaagc aacgagaggt
     1441 cgctgcgaat atttctcgaa gctctcctat tcactggata ccgtggctcg cccaggatga
     1501 gttgctcatc gcgatgcgca acgccgcatg tacggttcta ccgagtatta cggaaggttt
     1561 cggtttggcc gccgccgagt ccatcagcca gggggtcacc actttgtacc aacaggttgg
     1621 tggtcaccat ggtttgccgt cgatgcccaa cgcattaccg gttccgttga cgacaacgga
     1681 gcgagcgcac ctttacggtt tatggtcaga attaatcggc atcgatgatt tttggcccgt
     1741 ctggacca
//
LOCUS       DATCGC010002192         1195 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_162616, whole genome shotgun sequence.
ACCESSION   DATCGC010002192 DATCGC010000000
VERSION     DATCGC010002192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1195
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_162616"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..886)
                     /locus_tag="VIJ87_20835"
     CDS             complement(<1..886)
                     /locus_tag="VIJ87_20835"
                     /inference="COORDINATES: protein motif:HMM:NF013567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEY5446860.1"
                     /translation="MHPRTAVIGVGSLGRQHARLHAALASEGLSQFISVVDLNEQTAR
                     SVAEERQVEWTTNWRDLIGKVDAVSLAVPTEAHCEIACGLLEAGIHVLVEKPISRTLD
                     EADQMIAAAKSGNALLQVGHLERFNPAMVALRPHVKKPVYFEIHRVGEFTARSLDIDV
                     VLDLMIHDLDIVQWLVGEEVEVTSIHAVGIAILTNKVDAANARLEFSSGAVANITASR
                     VGTEKIRKMRFFQPHDYVALDYTTKRASVSSLSPPSAGGIWPGVHIKHLDVIDIEPLR
                     AEIVSFLDAIRDELAVPVS"
BASE COUNT          285 a          322 c          281 g          307 t
ORIGIN      
        1 ctgataccgg caccgcaagc tcatcacgaa tcgcgtccag gaatgaaact atctccgcgc
       61 gcaaaggctc gatatcaatc acgtccagat gctttatatg tactcctggc caaattccac
      121 ctgcactcgg cggtgagaga ctactcactg acgcgcgctt ggtcgtatag tccaacgcca
      181 catagtcgtg cggttgaaag aaacgcattt tgcggatctt ctcggttccg acgcgtgagg
      241 cagtgatgtt ggcgactgca ccggaagaga actccaatct cgcgttcgcc gcgtcgactt
      301 tgttcgtgag tatcgcaatg ccgactgcgt ggatactcgt aacttcaact tcttctccaa
      361 ccaaccactg aacaatgtcg agatcgtgaa tcatcaaatc caaaacgaca tcgatgtcca
      421 gcgaacgagc cgtgaattca cctactcggt gaatttcaaa atagacaggc ttctttacgt
      481 gtggtcgaag ggcaaccatt gccgggttga aacgctccag atgtccaacc tgcaacaagg
      541 cattacctga ctttgctgca gctatcatct ggtcggcttc gtcgagagtt ctggagatag
      601 gcttttcaac aagcacgtga atgcctgcct ctaacagtcc gcacgcgatc tcgcaatgcg
      661 cttcagttgg aaccgcgaga ctgacggcgt cgactttacc aatcaaatcg cgccagtttg
      721 ttgtccattc aacctgccgc tcttcagcta cagatcgggc agtctgctcg tttagatcaa
      781 cgactgaaat aaactgggat aggccctctg aagcgagagc agcgtggagg cgagcgtgtt
      841 gtcgtcccaa actaccgaca ccgataacag ctgtacgagg atgcattgtt tgtttcgtcg
      901 tggaaagtac ctagtgcttt tgagctttat ggtttgtttc gcgtagactc aatcgctttt
      961 gacagtgcgt ttcgagtaca cgaactaagt tcgaaagctc aattcagtta gccacaggaa
     1021 tatacttgca tccttcaacg cttgccaagc gagtccattt tttactcctt ctcgctttca
     1081 ttgccttcta tttttacggt ctcggacatc ttccattggt cggtcctgat gaacctcgct
     1141 atgcacaagt cgggcgcgaa atgttcttac gcggagactg gatcacacca acact
//
LOCUS       DATCGC010002193         1369 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_162643, whole genome shotgun sequence.
ACCESSION   DATCGC010002193 DATCGC010000000
VERSION     DATCGC010002193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1369)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1369)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1369
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_162643"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..371)
                     /locus_tag="VIJ87_20840"
     CDS             complement(<1..371)
                     /locus_tag="VIJ87_20840"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5446861.1"
                     /translation="MSGILIVEDEKHLADGLRYNLEAEGYNVDAVSDAEKALSLLEER
                     PREYDVIVLDVMLPGMDGFSMARQLRSQGQFVPILMLTARGQAEDVLRGFEAGADDYL
                     PKPFELSVLIARIHALLRRRE"
     gene            complement(377..1279)
                     /locus_tag="VIJ87_20845"
     CDS             complement(377..1279)
                     /locus_tag="VIJ87_20845"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEY5446862.1"
                     /translation="MRVRGRRRKSIAFFITLGACLVALAVALNVGWILLNWREVALLV
                     LGIIFFLAIIFGLVLNTTFLIREIRRNEQHDAFINAVTHELKTPIASIRLYLETLKTR
                     DVDEVQRAEFYDIMLADSARLLTTVEQVLRASRTGLRRRRITNSVIDVGEIVRECLEI
                     TRVRYGLTDNHLMYFESPEATSAKVSGDVDELRAAFSNLIDNAVKYSDAEVSVSVSVS
                     ALDAKRVAVRVSDKGIGIPSAQLKRIFKRFYRVPGKFMARVKGTGLGLFIVESVVSKH
                     GGRVFAESNGLGHGSTFTVQLPRV"
BASE COUNT          346 a          380 c          335 g          308 t
ORIGIN      
        1 cactctcgtc tccgaagcag cgcatgtatg cgagcaatca ggaccgacag ctcaaaaggt
       61 ttgggcagat agtcgtcagc tcctgcttca aatcctcgaa gaacgtcttc ggcttggccg
      121 cgagccgtga gcatcaaaat cgggacgaac tgaccttgtg aacgtaattg cctggccatc
      181 gaaaaaccat ccataccggg caacatcacg tcgagaacaa ttacatcgta ttcgcgagga
      241 cgctcctcca atagagacaa tgctttttca gcatcgctca ccgcatccac gttatagcct
      301 tccgcttcga ggttgtagcg caagccatct gccagatgct tttcgtcttc gacaatcagg
      361 ataccgctca tttcaattac acccgtggaa gctggactgt aaaagtgctg ccgtggccca
      421 ggccattact ttcggcgaac acacgcccgc catgtttcga cacgacagac tcaacaataa
      481 acaatccgag tccagttccc ttgacccttg ccatgaactt gcctgggacc cgataaaatc
      541 ttttgaagat tctcttcaac tgagcgctcg ggatgccgat tcccttatcg ctaacccgga
      601 ccgctactcg tttcgcatcc aaggctgaaa ctgaaacaga tacacttacc tccgcatccg
      661 aatacttcac agcgttgtcg atgagattgg aaaaagctgc gcgtagttca tcgacatctc
      721 ccgaaacctt cgcgctagtc gcttcaggtg attcgaaata catcagatga ttatccgtga
      781 gtccgtagcg gacgcgagtg atctcgagac attcgcgaac tatttcgcca acatcaataa
      841 cggagtttgt aattcgccgg cgtcgcagcc cggtcctact cgcgcgcaac acttgttcga
      901 cagttgtcag caatcgggcg ctgtcggcaa gcatgatgtc gtaaaactcc gcccgttgaa
      961 cttcgtcgac gtcacgcgtc ttcagcgtct cgaggtagag acgaatcgaa gcgatcggag
     1021 tttttaactc atgagtaaca gcgttaatga atgcgtcgtg ttgctcgttc cgacgaatct
     1081 cgcgaatcag gaaggtagta ttgagaacta gtccgaagat tattgcgagg aagaagataa
     1141 tgccgagaac taatagggcg acttcgcgcc agttgagcaa tatccaacca acattgagag
     1201 cgaccgccag cgcgacgaga cacgctccaa gtgtgatgaa gaatgcaatt gattttcggc
     1261 gacggcccct gacgcgcatg cgtggattct aaaggacagg cggcgggaac agaaggaagg
     1321 agcaagaggc agcgtgctcc tgcctcctgc tcctgctcct gctcctgct
//
LOCUS       DATCGC010002194         1702 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_263592, whole genome shotgun sequence.
ACCESSION   DATCGC010002194 DATCGC010000000
VERSION     DATCGC010002194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1702)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1702)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1702
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263592"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(120..>1702)
                     /locus_tag="VIJ87_20850"
     CDS             complement(120..>1702)
                     /locus_tag="VIJ87_20850"
                     /inference="COORDINATES: protein motif:HMM:NF013878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HEY5446863.1"
                     /translation="GGTHLSGFRSAFTRTINAYAQSSGLAKNFKGSLTGDDVREGLVA
                     VISVKLPQPQFEGQTKGKLNSDVKGAVESFLNDRLTEFFEQNPPVARKVVGKALDAAR
                     AREAARKAREIVRKGAMGSTMLPGKLADCQERDPSLCEIYIVEGDSAGGSAKQGRDRK
                     NQAILPLKGKILNVEKARFDKMLGHSEIKSLITALGTGIGKDDFDVTKLRYHKIILMT
                     DADVDGSHIRTLLLTFFYRQMPELVERGHVFIAQPPLFKVKRGKKEEYIKDEGSMVRY
                     LMRMATNDMSVKSVGAKEAIEGSELAKSLEKMVDFKQYFERATRRLGGDSNMLQVLLE
                     TLAGRKGLLHKEGLTLRNVFQDGNLMQKVDAAINKAGYETELTPDEEHGLWEIETMTR
                     SGNNIAIDWNFASYVEFQKAVELFKNLEENLSGPFVSGENGTSEEVPTREALLDKVLA
                     AAKKDLTIQRYKGLGEMNPEQLWETTMNPDKRTLLEVRIDDAVETDEIFTVLMGDAVE
                     PRRKFIEDNALDVRNLDV"
BASE COUNT          367 a          471 c          409 g          455 t
ORIGIN      
        1 cgatttagag agtaatgtcc gatatgcgtc ttgtcgtcgt gaatcgatta cgacctactt
       61 gataatggag gcctgtccgc ctcacgacga caagacagac gcatatcgga cattggtcac
      121 tacacgtcca ggtttcggac gtcgagcgcg ttgtcctcga tgaattttct tcgcggctca
      181 actgcatcgc ccatgagcac cgtaaagatt tcgtcggttt caacagcatc atcaattcgg
      241 acttccaaca gcgttcgctt gtcgggattc atggttgttt cccaaagctg ctcagggttc
      301 atctcaccca gtcctttgta acgctgtatg gtcaggtcct tctttgctgc cgcaagaacc
      361 ttatccagca gtgcttcacg cgtcggtacc tcttcactgg tgccgttctc gcctgagaca
      421 aatggacctg agaggttctc ttccaaattc ttgaagagtt cgacggcctt ttgaaattca
      481 acgtaactgg cgaagttcca gtcgatcgcg atgttgttgc cagatcgcgt catcgtctca
      541 atttcccaaa gcccgtgttc ttcatccgga gtcaactctg tctcgtagcc agctttgttg
      601 atggcggcat cgaccttctg catcaggttg ccatcctgga aaacgttgcg tagcgtcaag
      661 ccttccttgt gaagaagtcc tttgcggcca gccaacgttt cgaggagcac ctgcagcatg
      721 tttgagtcgc cgccaagacg cctggtagcg cgttcgaagt actgtttgaa gtcaaccatc
      781 ttctcgagag acttcgcaag ttcgcttcct tcgatggctt cctttgcacc aactgatttc
      841 acactcatgt cgttggtcgc catcctcatc aggtaacgaa ccatcgagcc ttcgtctttg
      901 atgtactcct ctttcttgcc gcgcttcact ttgaaaagtg gaggttgtgc aataaagaca
      961 tggccacgct ccactagttc gggcatctgg cgatagaaga acgtcaataa cagagttcga
     1021 atatgtgaac cgtcgacatc agcgtcagtc atcagaatga tcttgtgata acgaagctta
     1081 gtgacatcga aatcgtcttt gccaatacct gtacccaggg cggtaattag agacttgatt
     1141 tcgctgtggc ccagcatctt gtcgaagcgg gctttctcta cattaaggat ttttcctttg
     1201 agcggaagga tcgcctggtt cttacgatca cgaccttgtt ttgccgaacc gcctgcagag
     1261 tcgccctcaa caatgtagat ttcacacaac gaagggtcgc gctcctgaca atcggcaagc
     1321 ttgccaggca acatagttga gcccatcgcc cctttacgaa cgatctcgcg agcctttcta
     1381 gccgcctcac gtgcgcgcgc agcatcgagt gccttgccca caacctttct cgccacgggc
     1441 gggttctgct caaagaattc ggttagccga tcattcagga atgactcaac cgcgcctttc
     1501 acgtctgagt tcagcttacc tttggtttgt ccttcaaact gaggctgcgg caacttcact
     1561 gagatgaccg ctaccagacc ctcgcgcacg tcgtcgccag ttagactgcc tttgaagttc
     1621 ttcgcgagtc ctgacgactg ggcgtaggca ttaatggtcc tggtaaaagc agagcgaaat
     1681 ccggaaagat gtgtgccgcc gt
//
LOCUS       DATCGC010002195         1744 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_131896, whole genome shotgun sequence.
ACCESSION   DATCGC010002195 DATCGC010000000
VERSION     DATCGC010002195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1744)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131896"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..725
                     /locus_tag="VIJ87_20855"
     CDS             <1..725
                     /locus_tag="VIJ87_20855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446864.1"
                     /translation="NLPPYLASDIVFIVVLLAAAVGIMLLPFKVSADLFYTKSKIAGG
                     FFKTLIGLWHLILQLVVPYILILNGNFYVWVLAAILLVAPIPLAQLLMKKDSRVALTL
                     LWFIYGIVMLTLPWSVAWLLAQFGMKYVLVFPEPHGWSALLPATVAGIIGAIICCLWT
                     GWYFAVCFAFNGHNNEVGGTARIEEFKQFIRFRLTKDGLTGFVIAVDDVSLIDKDDGK
                     GRKMDGSDLKPKLIDVFHLVPK"
     gene            756..>1744
                     /locus_tag="VIJ87_20860"
     CDS             756..>1744
                     /locus_tag="VIJ87_20860"
                     /inference="COORDINATES: protein motif:HMM:NF013714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEY5446865.1"
                     /translation="MKYRGYLYVALATNLNIFLNALTFGNYLWLEGRVRNGVFRNWGR
                     RYRYRPERFATPSSEAELVELIKNAKDLRFFGSAHSFNDGVVADTTLVSLDNYTGVVA
                     EDTAKLQLTVRGGTRIRDVVRLLLDRGWAFRALPSHDAQSIGGILSTDVHGTGKDWGF
                     VSEAVVKLKVIDANGTVHTCGPKDDLFRAAIGGVGAVGVISEVTVQAVPKFNVEQKFE
                     LSDLDYVGSHLDELLQKNEHLSLYLFPFTTKCQISTWNRRDKPKSFLGPLREFLAISL
                     DAYLAAWFGNLMAYAGLLPKLSNFTHGLKKGTDLVMESNKAFNRTIYHLHQEL"
BASE COUNT          412 a          442 c          427 g          463 t
ORIGIN      
        1 ataaccttcc tccctatcta gcttcggaca tcgtattcat cgtcgtcctt ctcgcggcag
       61 ccgttggtat catgctgttg ccgttcaaag tcagcgccga tcttttctac acgaagtcta
      121 aaattgctgg tgggtttttc aaaacactca tcggcctatg gcacctcatc ctccaattag
      181 tggtccccta cattctcatt cttaacggca acttctacgt ctgggttctc gcagcgatcc
      241 tacttgttgc tccaattccg ctggcccaac ttctcatgaa gaaagacagc cgcgtcgcgt
      301 tgacattgtt atggttcatc tatggcatcg tcatgttgac actgccatgg agcgttgcgt
      361 ggctgttggc ccagttcgga atgaaatatg tcctggtttt tcccgaacca catggatggt
      421 cagcgttgtt gcccgccact gtcgctggaa tcattggagc aataatctgt tgtctctgga
      481 ccggctggta cttcgcagtc tgttttgctt tcaacggaca caacaatgaa gttggtggca
      541 ccgctcgaat tgaagagttc aaacaattca ttcgcttccg tctaacgaaa gatggattga
      601 ccggcttcgt cattgctgtt gacgacgtat cgctgatcga taaggacgat ggcaaggggc
      661 gaaagatgga tggaagcgat ttaaaaccga aactcatcga cgttttccat ctcgtaccca
      721 aataggctgc tctcactcac aaaggattct ggccgatgaa ataccgtggc tatctctacg
      781 ttgcgctcgc aaccaacctg aacatctttc taaatgcact cacgtttgga aactacttgt
      841 ggctcgaagg aagggtccgt aacggcgtct ttcgaaattg gggcagacgc tatcgatatc
      901 gaccggaaag atttgccacg ccaagttctg aagctgaact agtcgagttg attaagaacg
      961 cgaaagacct tcgatttttt ggctcggcgc attcctttaa cgacggcgtt gtcgccgaca
     1021 cgaccctggt ttcactcgat aactacacag gcgtcgttgc tgaggacaca gccaaactgc
     1081 aattgacagt gagaggtgga accaggattc gcgacgttgt gcgtttgctc ctcgatagag
     1141 gttgggcgtt tcgtgcgctg ccttcacacg atgcgcaaag tatcggaggt atcttatcta
     1201 ccgacgtcca tggaaccgga aaagactggg gcttcgttag cgaggctgtt gtcaaactaa
     1261 aagttataga cgccaatggt accgtccata cttgcgggcc gaaggacgat ctttttcgag
     1321 cggcaatcgg tggtgtagga gcagttggtg ttatttccga agtgactgtg caggccgtcc
     1381 ctaaattcaa tgtcgaacag aaattcgaac tctcagacct ggattacgtt ggaagccatc
     1441 tcgatgagct actccagaaa aacgaacatc tgagtcttta cttgtttccc tttactacga
     1501 aatgtcagat cagtacgtgg aaccgacgcg acaaaccgaa gtcctttctc ggcccgctgc
     1561 gtgaattcct cgcgatctcc ttggacgcat accttgctgc atggtttgga aatctcatgg
     1621 cttacgcggg cctgctaccc aagttatcga atttcaccca tggtttgaaa aagggcaccg
     1681 acctggtgat ggagagtaac aaggctttca accgaaccat ctaccacctg catcaggagt
     1741 tgga
//
LOCUS       DATCGC010002196         2235 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_131904, whole genome shotgun sequence.
ACCESSION   DATCGC010002196 DATCGC010000000
VERSION     DATCGC010002196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2235)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2235)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2235
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131904"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(133..1782)
                     /locus_tag="VIJ87_20865"
     CDS             complement(133..1782)
                     /locus_tag="VIJ87_20865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446866.1"
                     /translation="MEVQTLAASSNNASNIYPFIDLVLGGVFVLFHSGTRFNTPTTNR
                     SSTTAARYFMGLFLYCLVSIGVYALLVAFPHLLGFAQYGQQLGTDASFNRISLPLFVA
                     LLLTVLLPKIPILSSADKWVYEQLKYVSAIPGEVIRLSAELRKDDLKIAIDEQEEVRQ
                     QLENDGFDPKDIVFEQNKSPMSVWTNLMVLFQKVEAWKSDRRMTGYIASSQIELQKLR
                     DRKQLLVSKAKTCFHLLNEDIQGEASRKTHEATVRYREDFTERADQLTQDLFDFIARG
                     VLRTELTDGAREHRLKAMGFSLDWPDEFSLNELLLFFGVVCIVMMSGFVLFGAAFTKL
                     SFEAMLIRAIMISVIYSVAVACAVLPKTKWSFARSEEGEVRPIGFYLVAGLMSAAISQ
                     LTGLFFNVLLTHRFDWALQRTRLTYPWLLMSFATALITAAMVDNPQLQTISPKRQRCL
                     EGLGQGVLMLAVSSLTYIWLQQRLYVDFKDVDLKYLDYELPPLITIVVMGTVIGFVIG
                     FFIPTWYRGHQKKSEQQGVRSLTLAGSANTEASRSSLSAST"
BASE COUNT          592 a          589 c          540 g          514 t
ORIGIN      
        1 ctgcgttcga catgagcgca gacggtttcc tagatcacaa ctagtgctag tgaatcgcct
       61 agcctcaagg gcaaccttct ttccgaccaa tccgctgttt gattgagtac cttggtcaat
      121 tcaagcggat cgtcacgttg aagctgaaag gctacttcga ctcgcctcag tattagccga
      181 cccagccaaa gttaagctgc gcacaccttg ctgctctgac tttttctgat gtccgcgata
      241 ccaggtgggg atgaagaagc caatcacaaa cccaataaca gtccccatca cgacgatggt
      301 gatcaacggt ggcagctcat aatccaggta tttcaggtcg acgtctttga aatcgacata
      361 caagcgctgt tgcagccaaa tgtaagtgag tgaacttact gccaacataa gcactccctg
      421 gcccaggccc tccagacagc gttgtcgctt tggtgatatc gtctgtagtt gaggattatc
      481 aaccattgcg gccgtaatca atgcggttgc aaaagacatc agtagccagg gataggttag
      541 acgcgttcgt tggagcgccc aatcgaatcg atgcgtcaag agtacgttaa agaacaggcc
      601 agttagttga ctgatggctg ccgacatcaa cccggccacg agataaaacc cgatcggtct
      661 aacttccccc tcctcgcttc gcgcgaagct ccacttggtt ttgggtagaa ctgcacaagc
      721 caccgcaacg ctatagatca ccgagatcat gatggctcga atcagcattg cttcgaacga
      781 tagttttgtg aatgcggcgc cgaacagaac gaaccctgac atcatgacga tacacactac
      841 accgaaaaac agcagcagtt cgttcaagga aaactcgtca ggccaatcaa gtgaaaagcc
      901 catcgccttc aaacgatgct cgcgagcacc atccgtaagt tcagtgcgta agacaccgcg
      961 cgcgataaaa tcaaacagat cctgcgtcaa ttgatcggcg cgctcagtga agtcttcccg
     1021 ataacgaacc gtggcttcgt gcgtcttcct gctcgcctcg ccttggatgt cctcgtttag
     1081 cagatgaaaa caggtcttcg ctttggacac caacaactgc ttccgatcgc gcagtttttg
     1141 caattcgatt tgcgaactgg cgatatagcc ggtcatgcgt cgatcacttt tccaggcttc
     1201 taccttctgg aacaaaacca tgagattggt ccacacactc atcggcgact tgttctgttc
     1261 aaacacaata tcctttggat cgaacccatc gttctcgagt tgttgtcgca cctcttcctg
     1321 ttcgtcgatt gcgattttca agtcatcttt tcgcaattca gcgctgagcc gaatgacctc
     1381 tcccgggatg gcggacacat acttcagttg ttcgtacacc cacttgtctg cggagcttag
     1441 gatgggaatt tttggtagga gcaccgtcaa caacagcgcc acaaagagtg gaagcgagat
     1501 cctattaaag gaagcgtcgg ttccgagctg ctggccgtac tgggcgaacc ctaacaaatg
     1561 aggaaaagca acgagcaggg cataaacacc aatactcacc aaacaataga gaaacagtcc
     1621 catgaaatat cgtgcggctg tcgtcgacga acgattggtg gtaggcgtgt tgaagcgagt
     1681 tcctgagtga aacaggacaa agactccacc caggacgaga tcgataaagg ggtaaatgtt
     1741 actggcgttg ttgctgctgg cagcaagagt ttggacttcc atgagaacca cctactgtga
     1801 agaacagatc tggtcgcccg agtgagctgg cgagaattga ggagcgacca attaacggct
     1861 caagtgaccc actactcggg gagtcacctg cgccgattca attcagtgtt gagaggagca
     1921 atcagcgtac cccttattcg ggcacggatt actaggagag ataaagcagc gggaacaaag
     1981 gactaactct ttgagaacat ctcatgcgaa tgtgaacacg tcagtctaag tgtcgacaat
     2041 ccgcgcctaa gtgtatccgt tcagatagga ctctttgtag gcggcactcc gagtgttcat
     2101 tattctcaat ttgcgattca gatttagctg gttcagcgcc aaatcagatc tcttgcaatc
     2161 gacgctgcac ctcttcagca atctcagcag cactcaacga acgaccgaat cgaacaggcg
     2221 caccaaactt caccg
//
LOCUS       DATCGC010002197         1751 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_263649, whole genome shotgun sequence.
ACCESSION   DATCGC010002197 DATCGC010000000
VERSION     DATCGC010002197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1751
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263649"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..525)
                     /locus_tag="VIJ87_20870"
     CDS             complement(<1..525)
                     /locus_tag="VIJ87_20870"
                     /inference="COORDINATES: protein motif:HMM:NF012336.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl synthase N-terminal-like
                     domain-containing protein"
                     /protein_id="HEY5446867.1"
                     /translation="MSDLNEAVIISATRTPVGKFLGSLKGFSAPQLGAIVVREAVKRA
                     GVKPEDVDEVIMGCVIQAGLGQNPARQAALNGGLPSTVSAVTVNKVCGSGLKAVMMAA
                     QGVKLGDTEIVVAGGMESMSNAPYLLPKAREGYRLGNGELVDSMINDGLWCAFENYHM
                     GCTGEVVAEEYSIGR"
     gene            818..>1751
                     /locus_tag="VIJ87_20875"
     CDS             818..>1751
                     /locus_tag="VIJ87_20875"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NDP-sugar synthase"
                     /protein_id="HEY5446868.1"
                     /translation="MQALILAGGKGTRLRPLTVYTPKPIVPICNRPFLLYQIDTLRRA
                     GITDITLSLSYQPNKIEQLLGDGSDFGVKLKYTVEPQPMGTAGAYKFAEDLIREPTVV
                     FNGDILTDLDLKAVIREHNDRGASATVVLTPVDNPQSYGLVETESDGRIRRFLEKPKA
                     DEITCNTINAGTYILEPKVLDFIPAGENYSFEYGLFPDLLKRQEPFFAHIPGRVYWID
                     IGTPERYLRVHADLLSNSVGRIHIKERRGQFDAATVAEIDEQSMLGDDCQIKPGAQII
                     NSVLGQGCFVEERARVENSVIWPHTRIGTAAQVTG"
BASE COUNT          449 a          487 c          391 g          424 t
ORIGIN      
        1 gcgtccaatc gaatattctt cggcgactac ttcaccagtg cagcccatgt gataattttc
       61 gaatgcgcac cacaaaccat cattaatcat cgagtcaacc agttcaccgt ttcctaatcg
      121 ataaccttcg cgcgctttgg gaagcaggta aggcgcgttg ctcatcgact ccattccgcc
      181 ggcgacaacg atttccgtat cgccgagttt cactccctgc gcggccatca tcacagcttt
      241 caatccggag ccacagacct tgttgacagt tactgccgat actgtgcttg gtaacccgcc
      301 gttgagcgct gcctgacgtg cagggttctg tcccaaacca gcctgaataa cgcatcccat
      361 gattacttca tccacatctt caggctttac tccagctcgt ttaaccgctt cgcggacaac
      421 gatcgctcct aattgaggtg ctgaaaaacc ctttaatgaa cccagaaact tgccaacggg
      481 cgtgcgagtc gcacttatga ttaccgcctc gtttaaatca gacattgcaa aacctcgtaa
      541 atcgttaatc gttaatcgtg aaacctacca taatggtaaa ggttgaagcc ctttgagtcc
      601 aacatggaaa tgtccgatat gcttcagctt gtcgttgtct aaactatccg aacgcacagt
      661 cagtagtgaa ttacgtttac attcgtattt tgaaactcaa cgacaagcta aagcatatcc
      721 gacattcaat cgccaattgg caattggcaa ttggcattgt tagactccgc ctgctatttc
      781 acttccatat tgttttacga gtattagttg actaagcatg caagcactga ttctggcagg
      841 tggtaaaggc actcgcctcc gcccactcac cgtttacaca ccgaaaccga ttgttccgat
      901 ttgtaaccga cccttcctgc tctaccagat cgacactctt cgtcgcgcag gcattacaga
      961 cataacgctt tcgctttctt atcaaccgaa caagatcgag caactcctcg gcgatggttc
     1021 tgacttcggc gtcaaactga agtacaccgt cgaaccgcag ccgatgggaa ctgccggcgc
     1081 ctataagttc gcagaagatt tgattcgtga accaactgtc gtttttaacg gcgacattct
     1141 tacggacctc gatctgaaag cagtgatccg cgagcacaac gatcgcggcg catcggcgac
     1201 agtcgtgcta actccggtcg acaatccgca gagctatgga cttgtcgaaa cggaaagcga
     1261 cggtcgcata cgtcggttcc tcgaaaagcc aaaagcggac gagatcacct gcaacacaat
     1321 caatgccgga acctacattc ttgaaccgaa agtgctcgac ttcattcccg caggtgagaa
     1381 ctactcattt gagtatggcc tcttccctga cctgctcaag cggcaagaac ccttctttgc
     1441 ccacatacca ggtcgagttt attggatcga tatcggcaca cctgaacgat accttcgagt
     1501 tcatgccgat ctgctttcga acagcgtagg ccgtattcac atcaaggagc ggcgcgggca
     1561 atttgatgca gcaacagtcg cggagataga tgaacagtcg atgctgggag acgactgtca
     1621 gataaaacct ggcgctcaaa ttatcaactc agtattgggc cagggatgtt ttgttgaaga
     1681 gcgcgcacgc gtcgagaatt ccgtgatctg gccgcacaca cgaatcggaa ctgccgcaca
     1741 agtgaccgga g
//
LOCUS       DATCGC010002198         1111 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_464302, whole genome shotgun sequence.
ACCESSION   DATCGC010002198 DATCGC010000000
VERSION     DATCGC010002198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1111)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1111)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1111
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_464302"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..609)
                     /locus_tag="VIJ87_20880"
     CDS             complement(<1..609)
                     /locus_tag="VIJ87_20880"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEY5446869.1"
                     /translation="MDTFVQQLINGLTIGAIYALIALGYTMVYGILRLINFAHGDIYM
                     VGAFVGYFLAFQLGFTGPSLMGLVVVLIGSMVIAALVGMAIERFAYRPIRKYARMTTL
                     ITAIGVSLLIENLFVARLGAAPRAFPQLLQEQSYTLFGNAAISKSQILIFAVSVFLML
                     LLQWIIFKTRVGTAMRAVSFNLNSAKLMGINTDVIISVTFALG"
     gene            complement(638..>1111)
                     /locus_tag="VIJ87_20885"
     CDS             complement(638..>1111)
                     /locus_tag="VIJ87_20885"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEY5446870.1"
                     /translation="QLGIKAPLLGGDGWDATQLWELGGDALNGDFISNHYSIDDPAPA
                     IQKFVAEYQARYSKKPDALAALGYDAMQVLAEGLKKAGTTEGPKLRDAIAQTKGFPGV
                     TGAITLDAQRNAVKPAVVLKLQDRKYIYQETIYPEGMGPQSSAPATAPAPAKSGN"
BASE COUNT          275 a          279 c          303 g          254 t
ORIGIN      
        1 acccaacgcg aaggttaccg agatgatgac gtcggtgttg atacccatca actttgccga
       61 gttgagatta aaagacacgg cacgcatcgc ggttccgact ctggtcttga agatgatcca
      121 ttgaagcaac agcattagaa acaccgaaac tgcaaagatc agaatctgcg atttggaaat
      181 tgctgcatta ccgaagagcg tgtagctctg ttcctgtaat agttgcggga aagctcgcgg
      241 cgctgcaccg agacgagcaa cgaaaagatt ctcgatcaag agcgatacac cgatcgcggt
      301 gatcagtgtt gtcatgcgcg cgtatttgcg gatcggccga tatgcaaatc gctcaatagc
      361 cattccgacc agtgcggcga taaccatcga accgatcagg actaccacca ggcccatcaa
      421 agacggaccc gtgaagccga gttgaaaggc aagaaaatat ccgacgaacg caccgaccat
      481 gtagatgtcg ccatgggcga agttgatcag ccggagaatg ccgtagacca tggtgtagcc
      541 gagtgcaatc aaggcataga tcgcgcctat agttaagcca ttgattagct gctgaacaaa
      601 ggtatccatg ttagttgtcg agaagtttaa tgaatcccta gttgccggac tttgctggag
      661 ctggagcagt cgcaggggcc gaggactgtg gtcccattcc ctcggggtag atcgtttcct
      721 ggtagatgta cttcctgtcc tgaagtttga gtacaactgc aggtttcaca gcgtttcgtt
      781 gcgcatcaag cgtgatggct cctgttactc ccgggaaacc tttggtttgg gcgatagcat
      841 cgcgcagctt tggaccctcg gttgtacctg cttttttaag accctcagcc aacacctgca
      901 tggcgtcgta accgagcgcg gcaagggcgt caggtttctt tgagtaacga gcctggtact
      961 ccgccacaaa cttctgaatc gcgggtgcgg gatcgtcgat tgaatagtgg tttgaaataa
     1021 agtcaccgtt aagagcatcg ccgcccagtt cccagagctg cgttgcgtcc catccatcac
     1081 caccgaggag tggggccttg attccaagtt g
//
LOCUS       DATCGC010002199         1339 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_99065, whole genome shotgun sequence.
ACCESSION   DATCGC010002199 DATCGC010000000
VERSION     DATCGC010002199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1339)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1339)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1339
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99065"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..542)
                     /locus_tag="VIJ87_20890"
     CDS             complement(<1..542)
                     /locus_tag="VIJ87_20890"
                     /inference="COORDINATES: protein motif:HMM:NF013765.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446871.1"
                     /translation="MAHALTPMMQQYQRLRTSVPTDTLLLFRLGDFYELFFEDAKIAS
                     GLLNLALTRRNDVPMCGMPYHAAPGYIAKLISAGRRVAICDQTSAPQQGRIVTRDITQ
                     IITAGTVSDLDLLESKRANYLGAVFFDDGVFGFAYADLSTGEFRLMQVADARSLLDEL
                     ARVSPSELLISDHQEDQFGA"
     gene            complement(643..758)
                     /gene="rrf"
                     /locus_tag="VIJ87_20895"
     rRNA            complement(643..758)
                     /gene="rrf"
                     /locus_tag="VIJ87_20895"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(1004..>1339)
                     /locus_tag="VIJ87_20900"
     rRNA            complement(1004..>1339)
                     /locus_tag="VIJ87_20900"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          321 a          363 c          357 g          298 t
ORIGIN      
        1 aacgcaccaa attggtcttc ctggtggtcg ctaatcaata actcagaggg ggaaacgcgc
       61 gccagctcat caaggagcga gcgtgcgtcg gccacctgca tgaggcgaaa ctccccggtg
      121 ctgaggtcgg cgtaggcgaa accgaagact ccgtcgtcaa agaaaacggc accgagatag
      181 ttggctcgtt tcgattcgag gagatcgagg tcgctcaccg tcccggcggt gatgatctgc
      241 gtgatatccc gggtcacgat ccggccctgc tgcggcgcac tcgtctggtc gcagatcgcg
      301 acgcgccgac cggcactgat aagcttggcg atataacccg gcgcggcatg atacggcata
      361 ccgcacatcg ggacgtcgtt gcgcctggtc aaagccaggt tgagcagtcc ggaggcgatc
      421 ttcgcatcct cgaaaaagag ctcgtagaag tctccgagcc gaaagagcag caaggtatcg
      481 gtcggcacgc tggtgcgcag ccgctgatat tgttgcatca tcggagtgag ggcgtgagcc
      541 atgatggaag gatgaagttg aaggaggaag aatgcgagtt tctaattttt tcgcggggca
      601 acaaaaagcc cagcactttg tttccaaagt gctgggcgta agttctggca acgtcctact
      661 ctcgcacaac ctatagatgc actaccatcg gggctgcagc gtttcacttc cgtgttcgga
      721 atgggaacgg gtggggccac tgcgctatga tcaccagaaa actgcctcga gaatcgcggg
      781 acagttttct ggcgtgtgac tcgagaatcc gaagttcgtg atttggtaaa gcaaccaatt
      841 ctcgatccac aattcacact ctcaaagaac cctgattctc tgaaatctac atacaggaag
      901 tgttttccaa cagtttaggc ttcgttttat ttaaatgtca ttcccctcta tttgccaccg
      961 cgtcaggttt taaagctaac gcggcgggtt aatagaaaag taaatgacca agccgaacga
     1021 gttattagta tcacttagct acacacatta ctgcgcttct accagtgacc tatcaacgtg
     1081 gtggtctacc acgactcttc agggagaact catcttggga taggcttggc gcttagatgc
     1141 tttcagcgct tatcctttcc gaacatagct acccggcact gccgttgaca cgacaaccgg
     1201 aacaccagcg gttcgtcaga cccggtcctc tcgtactaag gtctgaaccc ctcaattctc
     1261 ctgcgcccac agtggataag gaccgaactg tctcgcgacg ttctgaaccc agctcgcgta
     1321 ccactttaac cggcgaaca
//
LOCUS       DATCGC010002200         1483 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_132053, whole genome shotgun sequence.
ACCESSION   DATCGC010002200 DATCGC010000000
VERSION     DATCGC010002200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1483)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1483)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1483
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132053"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            552..>1483
                     /locus_tag="VIJ87_20905"
     CDS             552..>1483
                     /locus_tag="VIJ87_20905"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEY5446872.1"
                     /translation="MSSVLEIIPLGGIGEFGMNCMAVRFGDEMIILDAGMGFPEESAY
                     GVDVSIPNFSFLDEYKDDITAIVLTHGHEDHLGALPYLLKKFNVPVYCSHFTAGLAES
                     KLEEHDLLGDVLLHRVEPRDVVEIGSFSVEFIRVSHSLVDCFSLAIRTPVGTIIHTGD
                     YKVDETPVIGEPIDLRSFRRYGQEGVLALLSDSTNATVPGRTPSERAVIPAFEEIFAE
                     AKGRIIVAAFASSIHRLQIVLDVAQQFNRRVCVLGRSMLKNFDVADRLGYLDIPDGLL
                     VSLNQTKEMSDDSIVFLVTGSQGETRAALSQMAM"
BASE COUNT          332 a          386 c          400 g          365 t
ORIGIN      
        1 cagggaagtg actcaatgct gactttatcg acactgaaga cttcatgcga cgcgtcgcca
       61 gtgtggtagt agtcaacacg catggtcgcg gttgcagcga aagccatcgt cgaatagaga
      121 aggataaagc cgagtatcga aggaagtttt gtcataacaa gattgtgcag cgtcaaagct
      181 cgacgatgca agacccaaaa aaagtctggc tctgttgtct tcttctgttg gacgactatg
      241 cggctttgcc gcttcccgtg cggaaagcct atggctttcc gcgcaaccct cgactctttc
      301 ggcggctaag ccgcccgagg cgaagcctca cacttctcta agtagcgcac ggaaagccag
      361 cgggctttcc gcacgggagg tggcaaagcc acaagaccag gtgattggca acgcatggac
      421 tctcgagttt ctaagagcaa agtcacccag accatgcccc tccttgtgct atactttcca
      481 gcctaatcag acctgctagc attcagtgtt caaggtcata aggttccccg agagtagagt
      541 aacaaccaaa agtgagtagt gttctagaga tcattccgct cggcggtatc ggcgagtttg
      601 gaatgaattg tatggctgtg cgctttggcg acgagatgat tattctcgat gccggcatgg
      661 gttttccgga ggagagtgcc tacggtgtag acgtctccat tccaaacttt tcgtttctcg
      721 acgaatacaa agatgacatc actgcgatcg tgctcacgca cggtcatgag gatcatctgg
      781 gcgcacttcc atacctgctc aagaagttca acgttcccgt ctactgttca cacttcactg
      841 ctggtcttgc tgaaagcaaa ctcgaagagc atgacctgct cggcgacgtg ttgctccatc
      901 gtgtcgaacc gcgcgacgta gtcgagatcg gttcgttttc ggtcgagttc atacgtgtgt
      961 cgcactcact cgtcgactgt ttctcgttag ccatacgcac tcccgttggg accattatcc
     1021 atactggaga ttacaaggtt gatgagactc cggtgattgg tgaaccgata gatctgcgct
     1081 cgttcagacg atacgggcag gaaggtgtgt tggctctgct gtcggattcg acaaacgcta
     1141 ccgtgccagg tcgcactccg tctgagcgtg cagtcattcc tgcgttcgaa gaaatcttcg
     1201 ccgaagcaaa aggcaggatt atcgtcgccg ctttcgcttc atcgattcac cgtctacaga
     1261 tcgtgttgga cgttgctcag cagttcaatc gccgtgtttg tgtgctgggc cgatcgatgc
     1321 tgaagaactt cgacgttgcg gaccgtctgg gttatctcga tatccctgac gggctactcg
     1381 tctcgctgaa ccagacaaag gagatgagcg acgactcgat cgtgtttctt gtgactggtt
     1441 cccaggggga aacacgcgcc gccttatcgc agatggcgat gca
//
LOCUS       DATCGC010002201         1408 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_263792, whole genome shotgun sequence.
ACCESSION   DATCGC010002201 DATCGC010000000
VERSION     DATCGC010002201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1408)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1408)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1408
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263792"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1093..>1408)
                     /locus_tag="VIJ87_20910"
     CDS             complement(1093..>1408)
                     /locus_tag="VIJ87_20910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446873.1"
                     /translation="EAKQFWPIYESYQKDLAGVNKQLGTTIREYAETFNKGTIPNDKA
                     KKLLGEALSVEDQEIKLKHTYAEQLEKVLPATKVARYIQIESKIRSLIKFEMAQQIPL
                     VY"
BASE COUNT          307 a          363 c          380 g          358 t
ORIGIN      
        1 ggaatgtgta gtaagagtat gcgcccttgt acctaagact tcaagtggcc actttcacca
       61 ctggaagctt gggacatgcg agccgcctac tcatggcact cttcgcacag atggccaacg
      121 tcgaatacga ctgagcgccg acaatggttg ttatctcgtt gacattgaga gcagcctgta
      181 cagtgacagg aatcggccgt agtcatggtt tcaagagcag ttcgtgtctc tcgccttttc
      241 tttccagtcg tgctatctca ctctgaacgt gtcttcggat ggtcggcgtc tgcaagcaga
      301 agttcccctg taacgccttc gtgatggaca cgtaactcac gatgtcgtcc tcggagtgat
      361 ggttcatcca taactgccta acaagttttt tcatggcaga catgggagga ttgtatcaga
      421 gactatgggc aggttcctct aaagtggcgt ttaacctctg ccacacggtc ggcctgcctg
      481 gtctgccctg gatttctttc cctagtaaac acgactatac tgccagggag ggtctacacc
      541 catgcgcctt gcagaggatg taaaaaactt cgcaggtgcc tgtgagcgac ttctggcgac
      601 ggcggcaatc agcaaccgaa cgttgacaga agacgaagcg agaattatcc agtattactg
      661 caaggaggtg gcggagaagc tgttcccgcc atcggtacct agtcagtgcg attcatagag
      721 tcagcagatc ggtgtcggcc tgcttatctg agtgatgatc ggcgaagtgt gttgcacatt
      781 gcactaggcg aaccttcatc aaaccgtaga cggagttgat acgtgcctac gactcttggg
      841 agggccaaca ggcggaatcg cctctattaa ggcgggctac gtagtattgc tggtatccct
      901 aataggaata tacgcctttt caaatgccgc atctagcccc acctcatcat cccgttttca
      961 ggggcaatca agatggcagc ttaagcatgg cgtacgttca attcgtatcg ggggcacccg
     1021 aaaaaggagg tccgtgaccc cttgcccata cagggtgtag gggtcacgga cggctagctt
     1081 ccggtctacg gtctagtaca ccaagggaat ctgttgagcc atttcaaact tgatcagcga
     1141 ccggatcttg ctttcgatct gaatgtagcg ggcgaccttg gtggccggca ggaccttctc
     1201 gagctgttcg gcataggtat gcttcagctt gatttcctgg tcttcgaccg aaagggcctc
     1261 gccgaggagt ttctttgcct tatcgttcgg gatcgtcccc ttattgaacg tttccgcgta
     1321 ctctctaatg gtcgtgccga gctgcttgtt cacgcccgca aggtccttct gataggactc
     1381 atagataggc cagaactgct tggcttcg
//
LOCUS       DATCGC010002202         2961 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_464469, whole genome shotgun sequence.
ACCESSION   DATCGC010002202 DATCGC010000000
VERSION     DATCGC010002202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2961)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2961)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2961
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_464469"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            79..>2961
                     /locus_tag="VIJ87_20915"
     CDS             79..>2961
                     /locus_tag="VIJ87_20915"
                     /EC_number="4.1.1.71"
                     /inference="COORDINATES: protein motif:HMM:NF008907.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004591 - oxoglutarate dehydrogenase
                     (succinyl-transferring) activity [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional oxoglutarate
                     decarboxylase/oxoglutarate dehydrogenase thiamine
                     pyrophosphate-binding subunit/dihydrolipoyllysine-residue
                     succinyltransferase subunit"
                     /protein_id="HEY5446874.1"
                     /translation="MSQQKKTDLSEVIAEEFGANAEYVQTLLERFRSNPGLVDDSWQA
                     YFNSLIGDGAVIQPSGNGVRAITVETDGAGAGKKASVAAAPAVEKKAAPSTAVEPDAE
                     VSVIRGPSLKIVENMEASLSVPTATSERRIPVKLLDENRRLINKHLAENDRGKVSYTH
                     LIAWAILRALDDAPQLNDGFAEVDDTPSRIKRSQVNLGVAVDLTKKDGTRSLLVPNIK
                     NANSLTFSEFLAAYDDVVKRARDGKLQIADFQGTTISLTNPGTIGTVASIPRLMVGQS
                     LIIATGAIEYPAEYQALAPEALSQLGISKTISISSTYDHRIIQGAESGALLARVHEFL
                     IGGRAFYNTIFANLGIPYPPLRWNQDRNPFFLTADQQREQAIKEARVIELINAYRVRG
                     HLIADIDPLHALPILYHPELDIETYGLTIWDLDRVFITDGLANKDSGTLREILDILQH
                     AYCGKVGIEYRHIQSKEEKTWIREQIRQQFVEPQPIPAEVKKRLLWKLIAAEQFERFL
                     HTKYLGQKRFSLEGCETVIPLLDRLIEGAASRGVEDITLGMAHRGRLNVLANVIGNLS
                     ERIFAAFEGSVHPEFPADEGDVKYHQGATGERATESGHTVRLSLSPNPSHLEAVDPVV
                     EGMVRAKQDANIEMRSLTRDEVVDLALPVLLHGDAAFAGQGIVMETLNLAGLKGYRTG
                     GTIHIIINNQIGFTTSPEAGRSTIYSTDVARMTQLPIFHINGDDPEAAYRALQIALDY
                     RQEFNKDVVLDLVAFRRLGHNETDEPSYTQPLMYARVKAHPGVRTLYAKRLVKEGVLT
                     EEEVTGLIEERVRRYEEALANAKRKVKEDPVAPQPEVEEMDGSALVDTGVDAETIRTI
                     AHKIAVVPEGFNINPKMVGQLARRAKMGDGTVPLDWAFAEAMAFGSLVLDGKRVRLSG
                     QDSGRGTFSQRHAVMYDTQTGKSWTPLSELRSEKSPEARFDVFDSSL"
BASE COUNT          764 a          722 c          807 g          668 t
ORIGIN      
        1 ctattcaaac agacacattg acgcatttcc tctgcaaaag cgtagaattc gcgtccttcc
       61 taacgaggta accaagattt gagccagcaa aagaaaaccg atttatcaga ggtgatcgcc
      121 gaggaattcg gcgctaacgc cgagtacgtt cagacgcttt tggaaagatt tcgtagtaac
      181 cccggcctgg tagatgactc ctggcaggct tactttaact cgctgattgg tgacggcgcc
      241 gtgattcaac cgtctggcaa cggtgtccgg gcgattaccg ttgaaacgga cggtgcaggc
      301 gctggaaaga aggctagtgt tgctgcagct ccggctgttg agaagaaagc tgcgccgtct
      361 actgcagtcg aacccgatgc agaagtcagc gtgatccggg gaccttcact caagatcgtc
      421 gaaaacatgg aggcaagtct ctctgtcccg acggcaactt cagaaagacg aatccctgta
      481 aaactgctcg atgaaaatcg ccggttgatt aacaagcatc tggctgagaa cgatcgtggc
      541 aaagtttcct acacacacct gattgcctgg gccatcctgc gtgcattgga tgatgctccg
      601 caactgaacg acggatttgc agaagttgat gacacgccaa gccggatcaa acgcagtcaa
      661 gtcaatctcg gtgtggcagt ggatctgacg aagaaagacg gaacgcgaag tttgttggtt
      721 ccgaacatca agaacgcaaa cagcctgacg ttttcagaat ttctggccgc ctacgacgat
      781 gtcgtgaagc gagcacgtga cggcaaactt cagatagcag attttcaggg tactacgatc
      841 tctcttacca atccgggaac catcgggacg gttgcttcga ttccgcgtct gatggttggt
      901 caatctctaa tcattgcgac cggagcaatt gaatacccag ccgaatacca ggcgctggcg
      961 ccggaagcgt tgtcgcaact tgggataagc aaaacgattt ccatcagcag tacttacgat
     1021 cacaggatta ttcaaggagc ggagtcgggc gcattactgg caagggtcca tgaatttcta
     1081 attggcggac gtgcgttcta caacaccatc ttcgcaaacc tggggattcc atatccgcct
     1141 cttcgttgga atcaggatcg caacccgttt tttcttacag cagatcagca acgcgaacaa
     1201 gcgatcaaag aagcgcgggt gattgagttg atcaatgcct atcgagttcg tggtcacctg
     1261 atagcagaca tcgatccact tcatgctttg ccgattctct atcaccccga gttagatatc
     1321 gagacctatg gtctaacgat ctgggatctt gaccgggttt tcattactga cgggttagcc
     1381 aacaaagata gcggaacgtt gcgcgaaatt ctcgatatcc tgcaacacgc gtattgcggg
     1441 aaagttggta tcgagtatcg acacatccaa agcaaagaag aaaaaacctg gatacgtgag
     1501 caaatcagac agcagtttgt cgaacctcaa ccaataccgg cggaagttaa gaagcgatta
     1561 ctgtggaagt tgatcgcagc tgagcagttc gaacgctttc ttcacacgaa gtacctcgga
     1621 cagaaacgat tctcgttgga gggttgtgag accgttattc cacttctcga tcggctaatt
     1681 gaaggtgcgg caagtcgagg cgtcgaagac atcacgctgg gcatggcgca ccgtggacgt
     1741 ttgaatgtac tggcaaacgt gatcgggaat ttgtcagaaa gaatctttgc ggcattcgaa
     1801 ggttcagtac atccggagtt tcccgccgat gaaggtgacg ttaaatatca ccagggcgcg
     1861 accggcgagc gagcgacaga aagcggccac acggttcgct tgtcgttgtc tccgaatcca
     1921 agccaccttg aggctgtaga tccggtcgtt gaaggaatgg ttcgcgcaaa gcaagacgcc
     1981 aatatcgaaa tgcgttcgct gactcgcgat gaggtggttg atctagcttt gccagtttta
     2041 cttcacggtg atgctgcttt tgcaggacag ggtatcgtga tggagacgtt gaatctcgcc
     2101 ggtcttaagg gttatcgaac cggtggaacg attcacatca tcatcaacaa ccagatcggt
     2161 ttcaccactt cacccgaggc agggcgttcc accatctatt caaccgacgt tgcacgcatg
     2221 acgcagttgc ctatcttcca catcaatggt gacgatccag aagctgcgta tcgagcactg
     2281 caaatcgcgc tcgattaccg tcaggagttc aataaagacg tcgtgctcga cctggttgct
     2341 ttccgcagac ttggtcacaa cgaaactgac gaaccgagct acacccaacc gctgatgtat
     2401 gcgcgtgtga aagcgcatcc cggagttcga accctgtacg ccaaacgact agtcaaggaa
     2461 ggcgtcctga ctgaggaaga ggttactgga ctcatcgaag agcgtgtgcg acgttacgaa
     2521 gaggcgctcg ctaatgctaa gcgaaaggta aaagaagatc cggtagcgcc gcaacctgaa
     2581 gtagaagaga tggacggatc agcgctggtt gacaccggtg tagatgctga aacgattaga
     2641 actattgcgc acaagatcgc agttgtgccc gaaggcttca acatcaatcc caagatggtt
     2701 gggcaactgg cacgacgcgc aaagatgggc gatggcacag ttcctttgga ttgggcgttt
     2761 gccgaagcga tggcttttgg atcgcttgtg cttgatggca aacgcgtccg tttgagcggt
     2821 caggattcgg gacgtggaac gtttagtcag cggcacgcag tgatgtacga cacgcaaact
     2881 ggtaagtcgt ggacaccact gtcggagttg cgctccgaga agagtcctga agcgcgcttt
     2941 gatgtgtttg acagttcgtt a
//
LOCUS       DATCGC010002203         1488 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_162823, whole genome shotgun sequence.
ACCESSION   DATCGC010002203 DATCGC010000000
VERSION     DATCGC010002203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1488)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1488)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1488
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_162823"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..227
                     /locus_tag="VIJ87_20920"
     CDS             <1..227
                     /locus_tag="VIJ87_20920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446875.1"
                     /translation="AFDFRIVTRFDPTLPSAPLEYVGSVGEFGLQWDQLVEHEPLDVL
                     TKIFFLSGKTKLHGVPYVGAGAPSLRQFDC"
     gene            complement(319..>1488)
                     /locus_tag="VIJ87_20925"
     CDS             complement(319..>1488)
                     /locus_tag="VIJ87_20925"
                     /inference="COORDINATES: protein motif:HMM:NF033594.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ISNCY family transposase"
                     /protein_id="HEY5446876.1"
                     /translation="GQAALIMGLSERQCYRVKARVSKAGAKGVVHGNRGRSCKRKTKE
                     KTVKRILELARGKYQGFNDHHLTEKLKEHEQIDLSREKIRCILRSQGISTPRKRRASK
                     HRSRRERRLGEGMMLQVDGSPHDWLEGRGARLCLIGAIDDATGKVVGAFFTQAESSWG
                     YLRLFSEIFKRHGLPQSIYSDRHSVFWTDREPTLAEQLINKRPLTEVGRALDELGVTL
                     IFAGSPQAKGRIERLWGTFQDRLVSELRLAKAKTAEQAQAVLDRYLTEHNRMFSKPAQ
                     AKPAWRKTSSGLIDQALCFKQRRTVANDNTVTFDGVIFQIPKKSPYRSYANKRIHVHV
                     GLDGAVEFFYKAEKIAAFDSTKTHALGLYRSQKKREGFRYGPISNQSTDYQQLSP"
BASE COUNT          307 a          415 c          393 g          373 t
ORIGIN      
        1 tagcgtttga tttcaggatc gtcactcgat ttgacccgac tcttccatct gctcccctcg
       61 aatatgtcgg gagcgttggc gaattcgggc tccaatggga tcagctggtc gagcacgaac
      121 ctctcgacgt tcttacgaag attttcttcc tgagcggaaa gacgaaactc catggcgttc
      181 cttacgtcgg tgccggcgca ccgtctttgc ggcaatttga ctgttagctc cacttatcac
      241 accctgccgt ggcaacaaaa caggaaaccc agtgtcgtag caacgtcaaa gtgtcaggtt
      301 aacagcaacg tgaaaacgtc agggtgagag ttgctggtaa tctgtagact gattagaaat
      361 aggtccgtag cgaaacccct cccgtttctt ttgcgatcga tataagccaa gtgcgtgcgt
      421 ttttgtagag tcaaaggcgg cgatcttttc tgctttgtag aaaaactcca ctgcgccgtc
      481 caacccgacg tgcacatgga ttctcttgtt agcgtaggag cgatagggag atttcttagg
      541 gatctgaaag atcaccccat cgaaggtgac cgtgttatcg ttggccaccg tgcgccgttg
      601 tttgaagcac aaggcctgat cgatgagtcc tgagctggtt tttctccagg cgggctttgc
      661 ctgggcaggc ttggagaaca tgcggttatg ctcggtcaga tagcgatcga gcacggcctg
      721 agcttgttca gcggttttgg ccttggccag tctcagttca ctgaccagcc ggtcctggaa
      781 agttccccac agtctctcga ttcttccctt ggcctgaggg gaaccggcga aaatgagggt
      841 gaccccgagt tcatcgaggg ctcgacccac ttcggtcaaa ggacgtttat tgattaactg
      901 ctcagcgagg gtgggctctc ggtcggtcca aaacaccgaa tgccgatcgc tatagattga
      961 ctgcggcaag ccgtgacgtt tgaagatctc tgaaaacagc cgcaagtaac cccaggagct
     1021 ttccgcctga gtaaagaaag ctcccaccac cttgcccgtg gcatcgtcaa tggctccgat
     1081 cagacaaagc cgcgctccgc gtccctccaa ccaatcatgg ggtgagccgt cgacctgcag
     1141 catcattcct tcacccaggc gcctctctcg gcggcttcgg tgctttgaag cgcgccgctt
     1201 tctcggtgtg gagatcccct gagagcgaag aatgcaacgg attttctcac gactgagatc
     1261 aatctgctcg tgctctttaa gcttctcggt caaatggtga tcgttgaagc cttggtactt
     1321 ccctcgggct agttccaaga tccgtttaac cgtcttctcc ttggtcttgc gtttacacga
     1381 gcgcccgcgg ttaccgtgaa ccactccctt agctccggcc ttactgacac gggctttgac
     1441 tcggtagcac tgccgttcgc tcagtcccat gatcagtgcg gcttgtcc
//
LOCUS       DATCGC010002204         1460 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_199403, whole genome shotgun sequence.
ACCESSION   DATCGC010002204 DATCGC010000000
VERSION     DATCGC010002204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1460)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1460)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1460
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199403"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..642)
                     /locus_tag="VIJ87_20930"
     CDS             complement(<1..642)
                     /locus_tag="VIJ87_20930"
                     /inference="COORDINATES: protein motif:HMM:NF024870.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY5446877.1"
                     /translation="MPSAKDHKSSIFVKLLYIGDSGTGKTTSLASLVAAGYHLRVLDF
                     DNLLDPLVHQARHNHSDLDQIQYQTFRDQMKTTPNGPIIDGVPTAYIGSMKAIDRWED
                     GSVPAEWGAKHILVIDSFTTMARAAYWWAKGLMGAATFAEGVPMKGVRPEQFYHTAQQ
                     ALMNTIAYVTAESFATNVIVVAHVKYIERDGITKGFPVAVGNAISPEIPSYFPS"
     gene            complement(801..968)
                     /locus_tag="VIJ87_20935"
     CDS             complement(801..968)
                     /locus_tag="VIJ87_20935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446878.1"
                     /translation="MAKVVQFQYINEREAWLLDDEGDIWCRTIFDDGKEVWHILALPV
                     GLDPDRDDGDV"
     gene            complement(971..>1460)
                     /locus_tag="VIJ87_20940"
     CDS             complement(971..>1460)
                     /locus_tag="VIJ87_20940"
                     /inference="COORDINATES: protein motif:HMM:NF024117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEY5446879.1"
                     /translation="TFEFQLDSEIVLCGHLDRIVRYGNDYYVQDQKTTGASLGGYYFK
                     RYSPDDQMSLYTIAAQVVWKQPVKGVMIDAAQIAVGFTRFERGFTFRTEAQNEKWLTD
                     ARYWIQRTWEAGEAGWPLNDAACMMYGGCPFREVCSKDPSVQRQYLETLFERKPTNPL
                     RR"
BASE COUNT          319 a          381 c          391 g          369 t
ORIGIN      
        1 ggaggggaaa tagctaggta tctccgggga tatggcattg cctacggcaa cagggaagcc
       61 cttagtgatc ccgtctcgct ctatgtattt gacatgagcc accacgatta cgttagttgc
      121 gaaggactcc gcagtgacat aggcgatcgt attcatcagg gcctgttgtg cggtgtggta
      181 gaattgctcg gggcgaactc ctttcatcgg tacgccctct gcgaaggtag ctgcgcccat
      241 caaccctttg gcccaccaat acgctgcacg agccatcgtc gtgaaagagt cgattacgag
      301 gatatgcttc gcaccccatt ccgctggaac cgatccatcc tcccatcgat ctatcgcttt
      361 catggagcca atgtatgcgg taggcactcc atcgataatc gggccattgg gcgtggtttt
      421 catctggtcg cgaaaggttt ggtactggat ttggtccagg tcggaatggt tgtgccgggc
      481 ctgatggacc agcggatcga gaaggttgtc aaaatcgagg acgcgcagat ggtagccagc
      541 cgcaacaagc gaggcaagac tggtagtttt tcctgtgccg ctgtctccta tgtagagaag
      601 tttgacgaag atggaggatt tatggtcctt agcgcttggc atactctagc tcctctatta
      661 aacgatgtat tctagctatt cggacaacgg tagatctgca ccggctgcaa cattgaccat
      721 cattgactgg ccaagcatta tagttgtcgc ctgagtagtt tttcatgcaa atagagcaca
      781 cgtttggtat gttgtgtccg tcagacatca ccgtcatccc tatctggatc tagtcctact
      841 ggcagggcca atatgtgcca tacctcttta ccatcgtcga atattgttcg acaccagatg
      901 tctccctcat catcgagtag ccacgcctcg cgttcgttta tgtactgaaa ctggacgacc
      961 ttggccacaa ctacctccgc agtgggttag tgggcttgcg ctcaaagagg gtttccaggt
     1021 attgccgctg aacggatggg tccttggagc aaacttcgcg gaatggacac cctccataca
     1081 tcatacaggc ggcatcgttg aggggccatc cagcttcgcc ggcctcccaa gtgcgctgta
     1141 tccagtagcg ggcgtcggta agccatttct cgttctgggc ctcggtgcga aacgtgaacc
     1201 ctcgctcgaa ccgagtaaac ccgacagcga tttgggcagc atctatcata acccctttga
     1261 ctggttgctt ccaaaccact tgtgcggcga tcgtatagag cgacatctgg tcgtcgggcg
     1321 aatatcgttt gaagtagtat ccgcccaacg aggcgccagt agtcttctga tcctgtacat
     1381 agtagtcgtt gccgtagcgg acgattcggt ctaggtggcc acacagaact atttcactgt
     1441 caagctggaa ctcgaatgtg
//
LOCUS       DATCGC010002205         1423 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_464472, whole genome shotgun sequence.
ACCESSION   DATCGC010002205 DATCGC010000000
VERSION     DATCGC010002205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1423)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1423)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1423
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_464472"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..507
                     /locus_tag="VIJ87_20945"
     CDS             <1..507
                     /locus_tag="VIJ87_20945"
                     /inference="COORDINATES: protein motif:HMM:NF012551.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endo-1,4-beta-xylanase"
                     /protein_id="HEY5446880.1"
                     /translation="NGAVRLIKNLKAKGVPISGVGLQGHNNLIFPSMQQQEAAITAFA
                     KLGVRVNITELDINVLPFVSEEEGPRIKLSDDLQPKLNPYTSGLPKSVNEEQAMQFAQ
                     LFRVYLKHRDVIDRITFWGVTDGDSWLNNFPVRGRTNYPLLFDREGKAKLSFDTLIAV
                     GGSARRSD"
     gene            705..>1423
                     /locus_tag="VIJ87_20950"
     CDS             705..>1423
                     /locus_tag="VIJ87_20950"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIM barrel protein"
                     /protein_id="HEY5446881.1"
                     /translation="MTSKSFQPKPEHKFTFGLWTVGNRGRDPFGDATRASVSPVTIVH
                     RLSELGAYGINLHDNDLIPIDATSSERDRIVSDLKKALADTGMKVPMATTNLFYDPVF
                     KDGAFTSNDARVRLYALQKTMRSMDLGAELGAHIYVFWGGREGAEVDAAKDAREALKW
                     NREALNFLCEYSIDQGYDYKFALEAKPNEPRGDIYLPTTGAMLGFIATLEHSEMVGVN
                     PEVGHEQMSGLNFYHVVAQAV"
BASE COUNT          365 a          349 c          379 g          330 t
ORIGIN      
        1 aacggtgccg tgcgactgat caagaacctg aaagccaagg gcgttccgat ttcaggtgtt
       61 ggcctacaag ggcacaacaa tttgattttt cctagcatgc aacagcagga agcagcgatt
      121 actgcttttg caaagctcgg agtcagggtc aacatcacag agttggatat caatgttctg
      181 ccgtttgtga gcgaagaaga gggtcccagg atcaaactca gtgacgacct tcagccaaaa
      241 ctcaatccat acacgagtgg attacccaag tcagtgaatg aagaacaggc tatgcagttt
      301 gctcaattgt ttagggtgta cctgaaacac cgtgacgtta tcgatcgaat taccttctgg
      361 ggtgtcaccg acggcgattc gtggctgaac aattttccag ttaggggaag aacgaactat
      421 ccgctgcttt ttgatcgcga gggaaaagcg aagctgtcgt ttgacacgct tatcgccgtg
      481 ggcggttcgg cacgacggtc cgactaggtc cgttgttacc tcggttgtag aaatgcagcg
      541 ctcacaacgg tgtgggttga aagagttgaa gatacttaga accaggctgt cgcccgttta
      601 atgggctaca ctctttgaaa aaccaatccc tgggtcttga acccaggatt catgctttcg
      661 cgtgttgcac acgctttctg atattcaaaa caagggataa gaaaatgaca agcaagtctt
      721 tccaaccaaa accagaacac aaattcactt tcggactttg gaccgtcggt aaccgcggtc
      781 gcgatccgtt tggtgatgcc actcgagcga gcgttagtcc agtcacgatc gtgcatcgac
      841 ttagtgagct tggcgcatat ggcatcaatc ttcacgacaa cgatttgatc ccaatcgacg
      901 ccacgtcatc ggaacgagat cggattgtga gcgatttgaa gaaagcgttg gccgacaccg
      961 gtatgaaagt gcccatggcc accaccaatc tcttctacga ccccgtcttc aaggacggtg
     1021 catttacttc caacgacgcg cgagttcgtc tttacgcttt gcaaaagacg atgcggtcga
     1081 tggatctcgg cgcagaactt ggcgcacaca tctacgtgtt ctggggtgga cgcgaaggcg
     1141 cagaagtcga cgccgcaaaa gatgcgcgcg aggcgttgaa gtggaaccgc gaagcactga
     1201 acttcctttg cgaatactca atcgaccagg gatacgacta caagttcgcg cttgaagcca
     1261 agcctaatga accacgtggg gacatttatt tgccgactac gggtgcaatg cttggattca
     1321 tcgccaccct cgaacattcg gagatggttg gtgtgaatcc ggaagttggg cacgagcaaa
     1381 tgtctggcct gaatttctac cacgtggtgg cccaggcagt cga
//
LOCUS       DATCGC010002206         1091 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_162846, whole genome shotgun sequence.
ACCESSION   DATCGC010002206 DATCGC010000000
VERSION     DATCGC010002206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1091)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1091)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1091
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_162846"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            265..>1091
                     /locus_tag="VIJ87_20955"
     CDS             265..>1091
                     /locus_tag="VIJ87_20955"
                     /EC_number="3.2.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF015692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-ribosylglycohydrolase family protein"
                     /protein_id="HEY5446882.1"
                     /translation="MSLKDNIAGGLIGLLVGDALGVPYEFHQPNDIPPAPEIEFEPPP
                     LFKRSHNGIPPGTWSDDGAQALILLTSLNQCSKLDLDDFGRRLINWYDAGYMAVDNRV
                     FDIGIQTSQAIRKLSQGAAAAYSGPADEYANGNGSLMRVLPLALWHQGSDAELVWDAH
                     EQSIVTHGHMRSLVCCALYCLWARCLLEGVSDAWTEAVSRLRKIYVEQSSAREELEWS
                     VRPDDPPEGQGSGYVVDCLRSARWAVGKGDYEMVVKSAISLGRDTDTTACVAGGLAGL
                     "
BASE COUNT          247 a          276 c          313 g          255 t
ORIGIN      
        1 gaaaaacggg atgaaatcag tgggagtgac ttacggttac ggctctcgcg aggaactgat
       61 tgaggccggc gctgactacc tttgcgacgc tccgatggaa gtagtttctt tgttagatcg
      121 aattcttagc cacggacgcc tccttggagg gcagtgactc gtcaccgctt tggtaaattc
      181 aaatgaccct ctaacaaagc ggtgacgagg caccgcactc cgggcgtagc gctttgggag
      241 gagacgcttt aacaaagcga gttgatgagc ttgaaagaca acatcgcagg cgggttgatc
      301 ggtctcctgg ttggcgatgc gcttggtgtg ccttacgagt ttcatcaacc aaacgacatt
      361 cccccagcgc ctgaaattga gtttgaacca ccaccacttt tcaaaagatc tcataacggc
      421 atcccgcctg gaacctggtc cgacgacggt gcacaggctt tgatcctgtt gacctctctc
      481 aatcaatgct caaaactcga tctcgatgat tttggtcgtc gtctcatcaa ctggtacgac
      541 gctggttaca tggcagtcga caatcgcgtt tttgatattg ggatccaaac gtctcaagca
      601 attcgcaaac taagccaggg agccgcagcc gcttattcag gtccagccga cgagtacgca
      661 aacggaaatg gttccctgat gcgagtcctt ccccttgcac tctggcatca agggtctgac
      721 gcggaactcg tgtgggacgc ccacgaacaa tccatcgtca cgcacggaca catgcgctcg
      781 ctggtttgtt gtgcgctgta ctgcttgtgg gccagatgcc ttctcgaagg tgtatcggat
      841 gcatggacgg aggcagtctc gcgcttacga aagatttatg tcgaacaatc gagtgctcgc
      901 gaagaactcg agtggtcggt gcgtccagac gatccacccg agggacaggg aagcggatac
      961 gtcgttgatt gtttgcgttc ggcgagatgg gcagttggta agggagacta tgagatggtt
     1021 gtgaagtcgg ccatctcgct ggggagagac actgacacaa cagcgtgtgt cgctggaggt
     1081 cttgccggtc t
//
LOCUS       DATCGC010002207         1498 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_464526, whole genome shotgun sequence.
ACCESSION   DATCGC010002207 DATCGC010000000
VERSION     DATCGC010002207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1498)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1498)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1498
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_464526"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(401..1153)
                     /locus_tag="VIJ87_20960"
     CDS             complement(401..1153)
                     /locus_tag="VIJ87_20960"
                     /inference="COORDINATES: protein motif:HMM:NF018983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 75 protein"
                     /protein_id="HEY5446883.1"
                     /translation="MRFPIVICLLFLAAATTVAQVSFVPPTASAAAVQGVPFSSAQSV
                     GDQFRQRFKECESRNTCDGVKQKFGCNLDPSRNTALLRLPNGTILFDGKMGLDADGSP
                     IAKKNATGTDQPETSFRFSVPGSPSVDADKIPFIVLPGGGFGSTLGLQMGDLAAVVFN
                     GKVVFALVADSGPKCKIGEGSIQLHEEIGHSVCRARNAQGECTKLKNAGIESQVLYFV
                     FPNSKIAGLTPTNAKTRIAEEGQRLLSALRGQ"
     gene            complement(1307..>1498)
                     /locus_tag="VIJ87_20965"
     CDS             complement(1307..>1498)
                     /locus_tag="VIJ87_20965"
                     /inference="COORDINATES: protein motif:HMM:NF013491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PEP/pyruvate-binding domain-containing protein"
                     /protein_id="HEY5446884.1"
                     /translation="NGGVKEVPITGDRVVLTDDVIRRLVRAATEIKRVFGSRDQDIEW
                     AYMKGQIFIVQSRPFIPGG"
BASE COUNT          387 a          422 c          350 g          339 t
ORIGIN      
        1 actcgtaaac cgttaaaacg gttcctcaac attaggcctt tctctaaccc caagctgaag
       61 cttggggaga atgagagcgt caccgcactc ccgatactga tctgatgaca gactttcata
      121 gggcctctcg agctcgtcac ccataatcat caacagcctt ctcagcagtc acgacaagct
      181 aaagcatatc ggacattaaa aaacccgcta ccattcgtgg cagcgggttt gtcgaagtcg
      241 ttttgcgctt tcttagttca atctgttagc gcagggaaca gttcgccagc ccgccaccaa
      301 tgtggtggtg atgccaagaa gaagcgtggc tgtgaacatt ggtcccaaac attgtgaagg
      361 gcttataacc gacatccaga cgacttgtca aattaatcgt ctactgaccg cgcaaagcac
      421 tgagcaatcg ctggccttcc tccgcaattc gagtctttgc atttgttggt gtcaaaccag
      481 caatctttga attgggaaat acgaaataaa gaacctgtga ttcgataccg gcattcttga
      541 gtttcgtgca ttcaccttgt gcattgcggg cccgacaaac ggaatgaccg atctcttcat
      601 ggagttgaat cgacccttcc ccgattttac acttgggccc cgagtcagcc acgagcgcaa
      661 agacgacctt gccattgaat acaaccgctg caaggtcccc catctgaagt cctaacgtcg
      721 agccaaaacc gccaccggga agcactatga aaggaatctt gtcggcgtcc acacttggac
      781 tgccaggcac actgaatctg aatgatgtct caggctgatc ggtgcccgtc gcgttcttct
      841 ttgcgatagg agagccatcc gcatccaacc ccatcttccc gtcaaacaag attgtcccgt
      901 ttggcaaacg cagcagcgcg gtgttgcggc ttggatccag gttgcagcca aacttttgct
      961 tcacgccgtc gcaggtattg cgcgactcac actctttgaa acgctggcga aattgatcac
     1021 caaccgattg ggcagaagag aatggcacac cctgaacggc ggctgcggaa gctgtcggcg
     1081 gaacaaaaga aacttgagca acggtcgtag cagcagcgag aaagagcaga cagatcacaa
     1141 tcggaaatcg catgggatcc tccttttcac tatttaacga accgatttac ttttccgcct
     1201 agcacaatct tcggagattg atatgcggtg cccgatagtt gtcctgcact gaagcgagac
     1261 tacaactgaa caagtaagga agggtggtta cccccgctct tagacttcat ccgccgggga
     1321 taaacggacg cgactgaaca ataaaaatct gccccttcat gtaagcccac tcgatatcct
     1381 gatcgcgact cccaaacacc cgtttgatct ccgtcgcggc acgaaccagt cgcctgatca
     1441 cgtcgtcagt caaaactaca cgatcgccag tgatcggcac ctctttgacg ccaccgtt
//
LOCUS       DATCGC010002208         1123 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_232413, whole genome shotgun sequence.
ACCESSION   DATCGC010002208 DATCGC010000000
VERSION     DATCGC010002208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1123
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232413"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(45..>1123)
                     /locus_tag="VIJ87_20970"
     CDS             complement(45..>1123)
                     /locus_tag="VIJ87_20970"
                     /inference="COORDINATES: protein motif:HMM:NF012550.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HEY5446885.1"
                     /translation="TAQNIKLYGESPDGGSQAICHNAVVEDLALPGQIVIGTDSHTCM
                     AGVLGCFAFGVGSTDMANAWYTKDIRIRVPETVRYVLKGTKRSDVAAKDVMLHILATE
                     YMKTSKGIGKVLEFAGEDLRNWSMDERATLTNMAVEAGGTTGIIEPDEVTLEYIVRTR
                     DLDAEEVRKGFTYSDETAEYAAVFEIDLDEISPMVATPGDPRNGIPIDELTENVRIDA
                     AYGGSCTGGKMADMDMYAEVLENALAQGKHVAEGVHLYIQFGSQKIKQYARERGYIEL
                     FERAGAELIDPSCGACINAGPGASPSAETVTVSAQNRNFPGRSGPGKLYLASPYVVAA
                     SAIAGRIVEPSEFLKSRSNELVSK"
BASE COUNT          257 a          350 c          248 g          268 t
ORIGIN      
        1 aagtcctgca ctgacccttc cttcgctgag caactcgtga aacgtcactt gctgacaagt
       61 tcattcgacc gactcttcaa aaactcactt ggctcaacaa tcctccctgc gatcgccgac
      121 gcggccacaa cataaggtga agccaagtac aacttgccgg gtccactccg tccggggaag
      181 tttctattct gcgcactaac tgtcaccgtt tcagccgaag gtgacgcacc aggcccagca
      241 ttgatacatg cgccgcacga gggatcgatc aactccgctc cagcacgttc gaataactcg
      301 atgtagccgc gctcgcgtgc gtactgtttg atcttctgag aaccaaactg aatgtaaagg
      361 tggacacctt cagccacatg cttcccttgc gcgagagcgt tctccaacac ttccgcgtac
      421 atatccatgt cggccatctt gccgccggtg catgaaccac cgtacgccgc atcgatgcga
      481 acattttcag ttagttcatc gatcggaatt ccattgcgcg gatcacccgg agtcgcaacc
      541 atcggactaa tctcatcgag gtcgatctca aacacggctg catactctgc cgtctcatca
      601 ctgtaagtga accctttacg aacttcctcc gcatcgagat ctcttgtccg aacgatgtat
      661 tcaagagtga cttcatcggg ctcgatgatt ccagtcgttc cgccagcctc cacagccata
      721 ttcgtcaaag tcgctcgttc atccatcgac caattcctta agtcctctcc ggcaaactcg
      781 agcactttgc cgatcccttt actagtcttc atgtattccg tggcgaggat gtgaagcatt
      841 acgtctttcg ccgcaacgtc gctccgctta gttcccttca aaacgtaccg cacagtttcc
      901 ggtacgcgga tgcgaatgtc cttcgtgtac caggcgtttg ccatgtcagt tgaaccgaca
      961 ccaaaagcaa aacacccgag cacaccagcc atgcaggtgt gcgagtcagt gccgataaca
     1021 atctgccctg gcaacgcaag atcttcaacg accgcgttgt ggcaaatagc ctgtgagcca
     1081 ccgtccggac tttcgccgta gagcttaatg ttttgagctg tcg
//
LOCUS       DATCGC010002209         3375 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_299148, whole genome shotgun sequence.
ACCESSION   DATCGC010002209 DATCGC010000000
VERSION     DATCGC010002209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3375)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3375)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3375
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299148"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..820)
                     /locus_tag="VIJ87_20975"
     CDS             complement(<1..820)
                     /locus_tag="VIJ87_20975"
                     /inference="COORDINATES: protein motif:HMM:NF015146.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HEY5446886.1"
                     /translation="MMNTAELKERFTLQAQTAGLQVECAMGGTMNATLAIIAEAPGRN
                     EIAQGIPLVGGAGNILWKAIKTHCPEVKRHECYITNVVKRQVAFDTDINRKPVGKHEL
                     TAWQELLLWELAMLPNLQHVLLLGNFAVEALTGKKGITNWRGSIIECNLHNRKLTAVC
                     TYNPAFCARDPMAHIVFDMDIGDKLRPVVLGRYKQHDVSVQINPTYKQALEYIRHCQT
                     SPNPIASDIEVIGNETACVGLAASPYEATCIAFRNEETNLYSVQEEHEIRRRLQR"
     gene            complement(817..2172)
                     /locus_tag="VIJ87_20980"
     CDS             complement(817..2172)
                     /locus_tag="VIJ87_20980"
                     /inference="COORDINATES: protein motif:HMM:NF024991.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY5446887.1"
                     /translation="MDLALDVEQQRAVDMCTDYTKRLVAVTGEAGTGKTTIIKNTCDI
                     LSQHAGGGNFTIAAPTGKAARRIREATGYPAQTIHKLLEFNRPDVDEETGEATSVSQP
                     SRTRHHPLDQRIIIVDEYAMVGTGLHRDLVSAIPSGGCLRVFGDVRQLPPIENNDLAD
                     PTSPFQRCLEMPNTFTLQNIYRQAEGNGIIEAARRITRGQFFGSNPDVEIRLHDAVLH
                     SLYTKLDGDKSIDWCSLDNQIISPARKSDIGTIRLNSILQARFNPEMPGKTELPRNKW
                     EAKSRVFVSIGDKVVCNTNSYDLRDYSERFAEYDANGVGLIGSFIPCPDTKQMLNGEV
                     GRILNIDEYGVLEIDFGDRVVELPPRINDYNMRKRFHYHYDPRKAIELAYALTTHKCQ
                     GSQYDNIIYCMASCAFFNLSRPNFYTGITRAAKHATILTDQRSFATSLKSMGWKRKKT
                     T"
     gene            complement(2292..2567)
                     /locus_tag="VIJ87_20985"
     CDS             complement(2292..2567)
                     /locus_tag="VIJ87_20985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446888.1"
                     /translation="MAVAPVRNTAGKKPANRAPQKRTFHFFLKVVDEAGNPIQGAKLK
                     VDRIITDARKVIEFMDTPDYADMGLTRVKHEVISTKRGEQDGATQVG"
     gene            complement(2653..3060)
                     /locus_tag="VIJ87_20990"
     CDS             complement(2653..3060)
                     /locus_tag="VIJ87_20990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446889.1"
                     /translation="MGILNFSQNIADAEPPPQLPAGEYKAICTAAVDKMAASSGNPML
                     TLTLQVPRSEFPADFDPGDGVDELTFTLNVVSRDIPADRWRMKNTCKAFGVPMSNSID
                     PNDFVGREARARIRMGLDLEKNPRAEVGQVLPL"
     gene            complement(3171..>3375)
                     /locus_tag="VIJ87_20995"
     CDS             complement(3171..>3375)
                     /locus_tag="VIJ87_20995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446890.1"
                     /translation="RDHAGKRYIAIRPERFRSPMKSRIWNVSGSTTNFEWKYNSNTNV
                     GQTISGWWDEYVKGGFTKLAVPK"
BASE COUNT          749 a          808 c          882 g          936 t
ORIGIN      
        1 gtcgttgcag acggcgacga atttcgtgtt cttcttgtac actgtataag tttgtttcct
       61 cgttgcgaaa tgcgatacaa gtggcttcat acggtgaggc tgcaaggccc acgcaagctg
      121 tctcgttacc gatgacttca atatccgacg cgattggatt aggtgaggtt tgacaatgac
      181 gaatatactc aagtgcttgc ttgtaggtgg gattgatctg caccgatacg tcatgctgct
      241 tgtatctccc taatacaact ggccgtagct tgtcgcctat atccatgtcg aacacgatgt
      301 gcgccattgg gtcacgtgca cagaaggcag gattgtaggt gcacactgca gtcagcttgc
      361 gattgtgcaa gttgcactcg atgatgctgc cacgccagtt ggttattcct ttcttgccag
      421 tgagtgcttc aactgcgaag ttgcctagca ggagcacgtg ttgtaggtta ggcaacatag
      481 ccaactccca caacaatagc tcctgccacg ctgttagctc atgcttgcca acaggcttac
      541 gattaatgtc agtgtcgaag gcaacttgac gcttgactac gttggtgatg tagcactcat
      601 gacgcttgac ctcagggcag tgtgtcttga ttgccttcca cagtatgttg ccagcacctc
      661 ctactagtgg aatgccctga gctatctcat tgcgaccggg agcttctgca atgattgcga
      721 gtgtggcatt catcgtgcct cccattgcac actccacttg caagccagca gtctgcgctt
      781 gcagtgtgaa gcgctctttc aattcagcag tgttcatcat gtggtcttct tccgtttcca
      841 gcccatcgac ttgagcgatg tggcgaagct gcgttgatct gttagaatgg ttgcgtgctt
      901 agcagcacga gtaataccag tgtagaagtt aggacggcta agattaaaga acgcacaact
      961 agccatgcag tagatgatgt tatcatactg gctcccctga catttgtgtg tcgtgagtgc
     1021 atatgctaac tcaatcgcct tgcgcgggtc gtagtggtag tgaaagcgct tacgcatgtt
     1081 gtagtcgttg atgcgtggtg gtagttctac cacacgatca ccgaagtcaa tctctaggac
     1141 accatactca tcaatgttga gaatgcgtcc aacttcacca ttgagcattt gcttcgtatc
     1201 agggcatggg ataaagctgc caatgaggcc aacgccatta gcgtcgtact cagcgaaacg
     1261 ctcgctataa tcacgtagat cgtagctgtt ggtgttgcat acaaccttgt caccgattga
     1321 tacaaagaca cggctcttag cctcccattt gttgcgcggt agttctgtct taccgggcat
     1381 ctcaggattg aagcgtgcct gtagtatgct gttcaacctg atagtgccta tgtcagactt
     1441 gcgcgctggt gatatgattt gattgtcgag actacaccag tcgattgact tgtcgccgtc
     1501 gagcttggtg tagagactgt gtagtacagc gtcgtgcagt cgtatctcta cgtcaggatt
     1561 gctaccaaag aactggccgc gagttatgcg ccgcgcagct tcgatgatac cgttgccttc
     1621 ggcttggcgg tagatgtttt gtagcgtgaa ggtgttgggc atctccaagc agcgttggaa
     1681 tggagaggta ggatcagcta ggtcattgtt ctctataggg ggtagctgcc gtacatcgcc
     1741 aaacacgcgt agacaaccgc cagaaggaat agcactaaca agatcgcggt gtaggccagt
     1801 accgaccatt gcatattcat ctacgatgat gatgcgttga tcgagtggat ggtgtcgtgt
     1861 tcggctaggc tgactgacag atgtagcttc acctgtttct tcatctacat ctggcctgtt
     1921 aaactctagc aacttgtgaa tagtctgtgc tggatagcca gtagcttcac gtatgcggcg
     1981 agcagctttg ccggtgggag cggcgatggt gaagttgcca ccgccagcgt gttgtgagag
     2041 tatgtcacag gtgttcttga tgattgttgt tttgcctgtg ccagcttcac ctgttactgc
     2101 cactaggcgc tttgtgtagt ccgtgcacat gtcaactgca cgttgttgtt caacgtccaa
     2161 agctaagtcc atcgtatgtc ctttcagcgc taggtttcgc gcttattaat atagacagcg
     2221 ccgcatatgc gtaggggata ctctactaca cgcggcgctg ccccacactc gttagctagg
     2281 tgtttgcggg tctagccgac ttgtgtagct ccgtcttgtt cgccacgctt agtagagatg
     2341 acctcatgct taacacgagt gaggcccatg tccgcataat caggtgtgtc catgaactcg
     2401 atgaccttac gtgcatcagt gatgatgcgg tcaaccttca gcttggcacc ctgaatggga
     2461 ttgccagctt catcgacaac cttgaggaag aagtggaagg tgcgcttctg aggtgcgcgg
     2521 tttgctggct tcttgccagc ggtattacgg acaggtgcta ctgccattgt tgcaaattcc
     2581 tcttgtaaga gttactaggg tgtgctaggt ggcgacattg ccacctagct ttgtcgttat
     2641 acactgtaga agttagagag gcaatacctg tccaacttcc gcgcgtgggt ttttttccag
     2701 atcgaggccc atacggatac gagcgcgagc ctcgcgtccg acaaagtcgt tagggtcgat
     2761 actgttagac atgggaacac cgaatgcttt acaagtgttc ttcatgcgcc aacggtctgc
     2821 aggaatgtca cggctgacaa cgttgagagt gaatgtcaac tcatcaacac catcaccggg
     2881 atcaaagtct gcagggaact cactacgcgg cacttgtagt gtcaatgtca gcatcggatt
     2941 gccagatgat gctgccatct tatcaactgc tgcagtgcag attgccttgt actcgccagc
     3001 aggtagctgc ggaggtggtt ctgcatctgc aatgttctga ctgaagttta gtatgcccat
     3061 gtatggctcc ttggtttgag cggcactcta gttatacaca ctattagaga gctaacaagc
     3121 cgctacagct agctcagtgt gtattgggta agcactataa gtagtgggtg tcactttggc
     3181 actgcaagtt tagtgaagcc acctttaaca tattcatccc accacccact tattgtttga
     3241 cctacattgg tgttgctgtt atacttccac tcaaagttag tcgtgctacc tgacacattc
     3301 catattctac ttttcatagg tgagcgaaag cgctcaggtc gaatagcaat gtagcgtttg
     3361 ccagcatggt cacga
//
LOCUS       DATCGC010002210         1174 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_464575, whole genome shotgun sequence.
ACCESSION   DATCGC010002210 DATCGC010000000
VERSION     DATCGC010002210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1174)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1174)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1174
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_464575"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(46..444)
                     /locus_tag="VIJ87_21000"
     CDS             complement(46..444)
                     /locus_tag="VIJ87_21000"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5446891.1"
                     /translation="MNSEHKRRILIVDDSRTMRRMVATALGNLEQCRFEEAANGLEAI
                     ERLVLGPADLMILDLNMPEFHGIEVLKFVRARPVYKSMPVVVLTTKGEESSRKEAMAA
                     GASLYLTKPFSLIELEAKVRGLLAEAGNEE"
     gene            913..>1174
                     /locus_tag="VIJ87_21005"
     CDS             913..>1174
                     /locus_tag="VIJ87_21005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446892.1"
                     /translation="MAVNFLTVITRKSITIDETLAIPSGYYYLKTGAFNIDSDHPPFP
                     LLLSGLPLLFLSLETPKLDDVRDQPSDRQTLIAGERFWSLNQS"
BASE COUNT          272 a          305 c          291 g          306 t
ORIGIN      
        1 gaaactggtt gaagaaatcg tcaggtggtt gattcgggtc tgccactatt cctcgttgcc
       61 tgcttcggcg agtagtccgc gaaccttggc ctcaagctct attaacgaaa atggcttggt
      121 gagataaaga ctggcgcctg ccgccatcgc ttcctttcgg ctggactctt cgccttttgt
      181 agttagaacc acgacaggca ttgatttata cactggtcgg gcgcggacaa acttgagcac
      241 ctcaataccg tggaattcag gcatgttgag atcgagaatc atcaagtcgg cgggaccaag
      301 gactaggcgt tcgattgcct cgagtccatt ggccgcttct tcgaatctgc attgttcgag
      361 atttcctaat gcagtcgcga ccatacggcg catagtccgg gagtcgtcga caatcagaat
      421 ccgtcttttg tgctcagagt tcaccccacc ggccctttct ggactagaac tattcggact
      481 tttaagggag tcctacgtta cgaaaggctt gggggtcttc cgggggttaa cagatgcgaa
      541 ggtattacag gcgggtcgtc tttgcaagcg gctgttcaaa aggctagttc gggtatttga
      601 tccatacgta acaaaccgac aacttcttgt tttttgagca acgttttgac aggaggacga
      661 gccgcgaaaa tcacacgaat caacgcgaaa ccaaaccaac acgaaatgca gttcgtgatg
      721 tttcgcgtga ggcgcgtgga tcgtagtcct tggttgcggc tgaggcgctg tgtaaactct
      781 gcgttctttg ggactttttg cgagttccac cttaggtcac aaccgatgac tccccgatcc
      841 cacacagaag ccttacgtca gactgcgacg aaatatgctc cccatttaat ctcagcagcg
      901 ctcctacttg taatggctgt caacttcctc accgtcatta ctcggaagag tattacgatc
      961 gacgagacgc ttgcgatacc ttccggttat tactatctca aaaccggagc gttcaatatc
     1021 gacagcgatc atccgccctt tccactgctc ttgtcagggc tgccactgct gtttctttcc
     1081 ttagaaacac caaaacttga tgatgttcgc gatcagccgt ccgatcggca aacattgata
     1141 gcaggcgaga gattctggtc actcaatcag tcgc
//
LOCUS       DATCGC010002211         1092 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_99183, whole genome shotgun sequence.
ACCESSION   DATCGC010002211 DATCGC010000000
VERSION     DATCGC010002211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1092
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99183"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..188
                     /locus_tag="VIJ87_21010"
     CDS             <1..188
                     /locus_tag="VIJ87_21010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446893.1"
                     /translation="IDDLVTEGYMREVPVDPFTSQKDWAISTGEDPNSTDGQSGMTDI
                     HSTSGDVSSEGTPYSEW"
     gene            380..>1092
                     /locus_tag="VIJ87_21015"
     CDS             380..>1092
                     /locus_tag="VIJ87_21015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446894.1"
                     /translation="MASVVHLEKGRGNSCTVRRAATFDLSDSIIRPSFDEQNIPNPTQ
                     LAGVLSELAASAGLMKQRRWSLSLPEATTRTLVLTMESQSQSASELQEVMRWKMERGF
                     GAPLEELSVSKEKLQKDSQGRDRYLAVGTRRDVLSEYESVLASLGWRAGLILPRHLGE
                     SQWLVRNGARGDSLLLSGSSNGFTAVILRDQHPLIIRTVACSEQERDDEFYRVLLFYR
                     DRRSADGDEGTTSLRRLLVV"
BASE COUNT          261 a          256 c          306 g          269 t
ORIGIN      
        1 cgattgatga tcttgtgact gaaggttaca tgcgcgaggt tccggtggac ccatttacat
       61 cacagaagga ctgggccata agtaccggcg aggatcccaa ttcaacagat ggccagtcgg
      121 gaatgactga tatccacagt acctccggtg atgtctcaag cgaaggtacg ccgtatagcg
      181 aatggtagga atgcaattgt agagttcaga ttagcgtatc gaaacacagc tgcttcttga
      241 gagatctcaa tgaatcgtat gaaacgaaat agaaatctga aatctgaaat ctgaagtctc
      301 aataaccacc ttgtccaatc tcatctccaa agtaacctcc ccttggtatc cctcaacggc
      361 tattggcttg gagcgcggag tggcgtctgt cgttcatctc gagaaaggcc gaggtaatag
      421 ttgtacggtc cgacgagctg caacgtttga tttgtcggat tcgattatcc gtccaagttt
      481 cgacgagcaa aatattccga accccacgca gctagccggg gtgctaagtg aacttgcagc
      541 gagcgctggt ttgatgaaac aaaggcgttg gtctctaagt cttccggaag ccacaacccg
      601 cacgctcgtg ttgacgatgg agagtcaatc ccagtctgct tccgagttgc aggaagtcat
      661 gagatggaag atggagcgtg gctttggtgc gccactcgaa gagctgtcag tttcaaaaga
      721 gaagcttcag aaagattccc agggaagaga tcgctatctg gcggtgggca ctcggcgaga
      781 tgtccttagc gagtatgagt cagtgcttgc ctcgcttggt tggcgcgcag gcttgattct
      841 tccgcgtcac ctgggcgagt cacagtggct cgtcagaaat ggcgccaggg gcgactccct
      901 tttgttgagc ggttcgagta acggctttac ggccgtcatc ctgcgtgatc agcatccctt
      961 aatcattcga accgttgcct gttcagaaca agagcgtgat gacgagtttt atcgagtcct
     1021 gttgttttat cgagaccggc gatctgctga tggcgacgag ggaacgacat ctttgcgtcg
     1081 gttactggtg gt
//
LOCUS       DATCGC010002212         1093 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_428974, whole genome shotgun sequence.
ACCESSION   DATCGC010002212 DATCGC010000000
VERSION     DATCGC010002212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1093)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1093)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1093
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_428974"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..913)
                     /locus_tag="VIJ87_21020"
     CDS             complement(<1..913)
                     /locus_tag="VIJ87_21020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446895.1"
                     /translation="MSDLKAAQDMMAAAAAAKSTVDPELVSVTQLLKSLDRASKNVRT
                     FGHQNSVAKKFFEQFYTELTNHVERYNALTFIVQREGLFFKDTSVYNSQAGESSENFA
                     FKLYSDGIRELTFQQGIEEDEVMFFFDALWNTSGTTGNEDDDIVTRLWSRNLPTITIV
                     TADEVMKLSEVEDVLTPQGKPPAEGSLREILDEANAKNAKEGKGDAQRKSRLSTSVMG
                     YEVTAEEMAGLAREIGEESNRDSILYLLDILTAVLSSERSPELLNKLFEIFEGILRSL
                     FQGGHWTTVEHVLGLLSEAEAIRPDLTE"
     gene            complement(913..>1093)
                     /locus_tag="VIJ87_21025"
     CDS             complement(913..>1093)
                     /locus_tag="VIJ87_21025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446896.1"
                     /translation="SRRSSNAKSGGVTTEAADCTDSAPCRTTTQFLLMILSDDVESKT
                     SEFLDQISPYRYDRQ"
BASE COUNT          217 a          304 c          301 g          271 t
ORIGIN      
        1 cctcggtcaa atccggtcgt atcgcctctg cctcagaaag cagccccaac acatgttcga
       61 ccgtggtcca atggccgcct tggaacagtg agcggagaat gccttcgaag atttcgaaca
      121 gcttgttcaa gagctcggga gaccgttcgg aggacaggac ggcggtgagg atgtcgagca
      181 gatacagaat gctgtctcgg ttggattctt ccccaatctc gcgggccaat cccgccattt
      241 cctctgcggt cacctcatag cccatgacgc tggtcgacag cctggatttc cgctgcgcgt
      301 ctcctttccc ctccttggcg tttttcgcgt tggcctcgtc cagaatttct ctcagagagc
      361 cctccgccgg gggcttgccc tgcggagtca gcacatcttc cacttccgac agcttcatga
      421 cctcgtcggc ggtgacgatc gtaatcgttg gcaggtttct cgaccacagg cgagtgacga
      481 tatcgtcgtc ttcattgccc gttgtgccgc tcgtgttcca gagagcgtcg aagaagaaca
      541 tgacctcgtc ctcttcaatg ccctgttgaa acgtcagttc tctgatgcca tcgctgtaga
      601 gcttgaaggc gaagttttcg ctcgattctc ccgcctgcga gttgtacacg gacgtgtcct
      661 tgaagaagag gccttcgcgt tggacgataa aggtcagggc attgtagcgt tccacatggt
      721 tggtcaattc agtgtaaaat tgctcaaaaa acttcttcgc cacgctgttt tgatggccga
      781 aagtccggac atttttcgac gcgcgatcca gcgacttcag cagctgggtt accgagacca
      841 gttctgggtc gacagtggac tttgcggccg cggcggccgc catcatgtcc tgggcagctt
      901 tgaggtcaga cattactgtc tgtcgtaccg gtaaggcgag atttggtcaa ggaattcaga
      961 agttttggat tccacgtcat cggagagaat catcaataaa aactgcgtag ttgtcctaca
     1021 tggagccgag tcagtacaat cggcggcttc ggtggtaacg ccccccgact tggcgtttga
     1081 ggaccgtcgt gac
//
LOCUS       DATCGC010002213         1214 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_232527, whole genome shotgun sequence.
ACCESSION   DATCGC010002213 DATCGC010000000
VERSION     DATCGC010002213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1214)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1214)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1214
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232527"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            76..714
                     /locus_tag="VIJ87_21030"
     CDS             76..714
                     /locus_tag="VIJ87_21030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446897.1"
                     /translation="MKAVTHNVLVDLELRDAISVVTKALKSRPHIAAFQEFNPDNAMI
                     LKGLKDYAVYTASAKGLPVLLKKPYVKKVHKVDSLILAKDFPGGRPTPGTEVFFENRF
                     GTHVAVLNTHPMAHHDKPAYRAAFKVAITHIEAWSREAKTLGYIPMVFMDGNGADHLQ
                     GLVSCWDGQPKLPTGPGGETIDGVWTVKKSAVVTTFETLSDHNGVLVKYERF"
     gene            722..1036
                     /locus_tag="VIJ87_21035"
     CDS             722..1036
                     /locus_tag="VIJ87_21035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446898.1"
                     /translation="MHKPQSKPPDTWTDHPLFDKIKSVGGGIYYAILGDGIEVGGSAE
                     NVWIWHWHTPKDGVHRWTLAQCGRHKVLQVDPLTLHPSLACEGGCSNHGWIQNGVWKS
                     AN"
BASE COUNT          323 a          307 c          329 g          255 t
ORIGIN      
        1 cctaaaaaat tccccggagg aaaattcccg agggacaaag tgcttttacg tattgggaaa
       61 ccggggagga actctatgaa agccgttaca cacaacgtat tagtcgactt ggaattacgg
      121 gatgccatat ctgtggttac caaggctctc aagtctcgac cacacatcgc ggcgttccag
      181 gaattcaatc ctgacaacgc gatgatcctc aaggggctga aggactacgc cgtctacacg
      241 gcatcggcaa agggcttgcc tgttcttctg aagaagccct acgtcaagaa agttcacaag
      301 gtcgacagtc tgattcttgc caaggatttt ccaggcggtc gcccaactcc tggcacagag
      361 gtcttcttcg agaaccgatt cggaacacac gtcgccgttc tgaacacgca tccaatggct
      421 caccatgaca agccagcata ccgtgctgcg ttcaaggtag ccatcaccca catcgaagct
      481 tggagtcgtg aagccaaaac actaggctac attcctatgg tcttcatgga cgggaatggc
      541 gcagaccatc tccagggact tgtcagttgc tgggatgggc agcccaagtt gccaacagga
      601 cctggtggag agaccattga cggtgtgtgg actgtgaaga agtctgccgt cgtcacaacc
      661 ttcgagacat tgtcggatca caacggcgtt ctcgtcaagt acgaaaggtt ctaagggatc
      721 gatgcataag ccacagtcaa agccacccga tacatggacc gatcatcctc tgtttgataa
      781 gatcaagagt gttggcggcg gtatctacta tgcgatactg ggagatggta tcgaagtagg
      841 tggctctgcg gaaaacgtct ggatctggca ttggcatact ccaaaagacg gtgtgcatcg
      901 ctggacgttg gcgcaatgtg gcagacacaa ggtccttcaa gtagatccct tgactctgca
      961 tccgtcctta gcttgcgagg gtggttgttc aaatcacgga tggatacaga acggggtatg
     1021 gaagtctgct aactaagagg aggtgtcatg gcagaggccg aaccctcggg aacaccaaag
     1081 aggcgacgca agactgccag cactcccgag gaaagagcca agcagcttca aaacatggca
     1141 tacgaccttg ccgagaagca gctggaacga ggaaccgcat cgtctcagat catatctatg
     1201 cttctgagag acgg
//
LOCUS       DATCGC010002214         1371 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_162937, whole genome shotgun sequence.
ACCESSION   DATCGC010002214 DATCGC010000000
VERSION     DATCGC010002214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1371)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1371)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1371
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_162937"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            558..773
                     /locus_tag="VIJ87_21040"
     CDS             558..773
                     /locus_tag="VIJ87_21040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446899.1"
                     /translation="MVPMRSRNVRFVIVGLVLLVMALLFFVFMRSIASTSNDPVSLMQ
                     TVGIVTGVITGISVVMIIAGLIGKRHG"
     gene            766..1323
                     /locus_tag="VIJ87_21045"
     CDS             766..1323
                     /locus_tag="VIJ87_21045"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024812.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HEY5446900.1"
                     /translation="MDRKLEFNHRIDDETELRLIEPQDAEALDSLIEQNRAHLKEYSA
                     WLKDDHSIENTRSFIERNLAQFARHEGFAIAIWHKDEMAGQIEYNYLDWGNRKTELGF
                     WLGAGFQGKGLATKSCRFFIHHAFNELKLNRIEMLCGVENKKSRKIAETLGFTQEGVV
                     RQAGWLHDHFVDFVIYGMLANEWQK"
BASE COUNT          367 a          295 c          375 g          334 t
ORIGIN      
        1 aatggtaagg tttatgttga gtgagtttgt gaatcgtgaa tcgtgaagcg tgaattgtaa
       61 acggcaatcg tggtcaatgt tgatcgattc acgatttacg agtcaccaca acctgcattt
      121 aagcatgagg agcgagaaat gaaggaaaga gatcgcaaag gggagaaggg gatcgtatta
      181 gtcgtcgtgt tggtggtatt aacattgttc ggcatagcag gaatttcttt tactttctac
      241 gccgccccac ctatgtgcga gcgtaatccg accgttgagc agcagggaga cagatgcacg
      301 aaaacgatcg ggaacacggc tgatcatcgg ccatagcttc gatcaccccg tcaggggtgt
      361 gatgtttata gcccgtgacc gctaaacatc ccgcactcct ttaggagtgc cctgtcattt
      421 cagtcgtcag ttcaacaaga tatgggttcg aattctgaga tcgaagagtg gccaataaca
      481 taacactcct aaaggagcgc aaagacttga ccgcgccgat gctataaaca tgacactcct
      541 gacggagtgc aaacccgatg gtccctatgc gaagtaggaa tgtgcgattc gtaattgttg
      601 gcctcgtcct tctcgttatg gcgttgctgt tttttgtctt catgcggtcc atcgcatcga
      661 catcaaacga tcccgttagc ttgatgcaga cggttggaat cgttaccggc gtcatcaccg
      721 gcattagcgt cgtcatgatc atcgccgggt tgattgggaa acggcatgga taggaaactc
      781 gagtttaatc accggatcga cgacgagacc gagcttcgcc tcatcgagcc gcaggacgca
      841 gaagcattgg atagtttgat cgagcagaat cgagctcatc ttaaagagta ttcggcatgg
      901 ttgaaagatg atcactctat cgaaaacact cggagtttca tcgagcgaaa ccttgcgcag
      961 tttgccaggc atgaagggtt tgcaattgct atttggcaca aagacgaaat ggccggacag
     1021 attgagtaca actacctcga ctggggcaat cggaaaacgg agctggggtt ctggctcgga
     1081 gctggttttc aaggcaaagg gcttgcgacc aaatcatgcc ggttttttat tcaccatgca
     1141 tttaatgaac tgaagctgaa ccgcattgag atgctttgcg gcgtagagaa taagaagagt
     1201 cgaaagatcg cggagactct aggcttcaca caggaaggag ttgtccggca ggcgggatgg
     1261 cttcatgatc actttgttga ctttgtgatc tatggaatgt tggccaacga gtggcagaag
     1321 taaaaaacgg gccgcagatt ttcgcggata acacagatcc gaaagtaaca a
//
LOCUS       DATCGC010002215         1488 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_199506, whole genome shotgun sequence.
ACCESSION   DATCGC010002215 DATCGC010000000
VERSION     DATCGC010002215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1488)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1488)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1488
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199506"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(128..>1488)
                     /locus_tag="VIJ87_21050"
     CDS             complement(128..>1488)
                     /locus_tag="VIJ87_21050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446901.1"
                     /translation="DSRHKRLRVVDIWYKSGKGWKWCLFTGSMKIDEGKGYFYNEKGD
                     MICKYIMFSSFVDHDGDRYGFVRNLRSSQDEINQRRSKGLHELVSRRIKAEDGAFADI
                     EVTRREAIRPDGVVIYNKGFEMEFDDAARITNIEGQIKFLEDAKNEIENFGPSPALIG
                     QGLEYKSGRAINLLQQAGIAELGPFVIGIKNWKLRLYRAIWNAVQRYWTAERYIRVTD
                     DAGLAQLVQVNGVGVDEYGLPRLVNSIGTLDVNFSLDEGPDEVNMMGDAYDTLVALTA
                     QGANIPPQILLELAPLQGQLKRKLLALLEQKDPVAEQAKAIAIAGEAAKVDETKSKTA
                     LNIAKAQEAAASNDPREKQQEMVMKQQEHGMKMQESVMKVQSAQKLAQIKASTEFSKL
                     QSTQQMGQQDIQLNAMKGQQDLRHNELKGQQALVQGEQKHQMMLKQAAQKPKPAGGTS
                     GR"
BASE COUNT          284 a          454 c          368 g          382 t
ORIGIN      
        1 cgtggtctcg atgaaggcct gccatgcctg tggcccttgc ccaccgacct cggccttggt
       61 ataggccagg agcttgtccc ggacctgagg gtcctgaagc tcttccgcga agcgtcttcg
      121 tccgagatca tctgccactg gtacctccag cgggtttggg cttctgggcg gcctgcttca
      181 gcatcatctg gtgcttctgc tcgccctgga ccagggcctg ttgacccttc agttcattgt
      241 gccgcagatc ctgttgaccc ttcatagcgt tcagctgaat gtcctgctgt cccatctgct
      301 gggtagactg aagcttgctg aactcggtcg aggccttgat ctgcgcgagt ttctgcgcgg
      361 attggacctt catgacgctt tcctgcatct tcattccgtg ctcttgctgc ttcataacca
      421 tttcttgctg tttttcgcga ggatcgttac tcgcagcggc ctcctgggcc ttggctatgt
      481 taagggcggt cttggacttc gtttcatcaa ctttcgcagc ttcgccagca atggcaatcg
      541 ccttagcctg ctcagccaca ggatctttct gctccagaag agccaaaagc ttccgcttga
      601 gctgaccctg tagcggagca agctcaagta ggatctgtgg aggtatatta gccccttgag
      661 cggtgagggc gaccagcgta tcataggcat ctcccatcat gttgacctca tctgggccct
      721 catccaggga gaagttgaca tctagcgtcc caatcgagtt cacgagccgc ggaagcccgt
      781 attcatccac ccctacaccg ttgacttgca ccaactgcgc gagtcccgcg tcgtctgtaa
      841 cccgaatata gcgctcagcg gtccaatatc gctgcacagc gttccaaata gcccgataaa
      901 gacgcagttt ccagttcttt atgcctataa cgaacggccc cagctcggcg atacctgctt
      961 gttggagcag gttgatcgcg cgtccggact tgtactcgag gccctgacct attagggccg
     1021 ggctggggcc gaagttctcg atctcattct tcgcgtcctc taggaacttg atttggcctt
     1081 cgatgttagt gatgcgcgct gcatcatcga actccatctc gaagcccttg ttgtagataa
     1141 ccacaccgtc cggtcgaatg gcctcccgtc gagtaacctc aatatcagca aatgctccat
     1201 cttccgcctt gatcctacgc gaaaccagct catgtaggcc tttcgagcgg cgctggttga
     1261 tctcatcctg ggatgaacgt agattacgga cgaagccata gcgatcaccg tcatgatcca
     1321 cgaagctgga gaacatgata tacttgcata tcatatctcc cttctcattg tagaagtagc
     1381 ccttgccctc atcgatcttc atcgagcccg tgaacaggca ccacttccac cccttgccgc
     1441 tcttatacca gatatccact acccgcaggc gcttatgccg agagtcca
//
LOCUS       DATCGC010002216         1914 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_199543, whole genome shotgun sequence.
ACCESSION   DATCGC010002216 DATCGC010000000
VERSION     DATCGC010002216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1914)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1914)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1914
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199543"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            134..>1914
                     /locus_tag="VIJ87_21055"
     CDS             134..>1914
                     /locus_tag="VIJ87_21055"
                     /inference="COORDINATES: protein motif:HMM:NF019259.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1592 domain-containing protein"
                     /protein_id="HEY5446902.1"
                     /translation="MKLILDKLKAGEMPPPKMPRPKPEELAAVTDWLSGQLGQQPKSA
                     PTNQSSDEPVRVTVRRLNRIEYDNTVRDLLGVDLHLSESFPQDDSGYGFDNIGDVLSL
                     SPVLMEKYLAAAEKISRTAVFGVEPVKPTLVPLRSGQRNQTPQPTPLTDYDLSGLSLP
                     NAVHTTHRFPVDAEYVIRATLAGERPPGSAPFQLALWIDGIQTQLVQVDPASLASFAL
                     PSEPQQLWSIKQEFRAKLTAGDHWLAVSIPHLYEGLPASYNGPNPSTRPVPARRPFKP
                     PPDLTPKEIEERRKEFEKRQSEKVPANGARVGYLELGGPYAATTGPSAESQNKIYVCH
                     HLNGHHNKRCAGLILENLAHRAYRRQVSTSEITPLIRLFDEARTETGSFQEGLSVAIQ
                     AMLVSPQFLFRFERGRTAATPKLTQYELASRLSYFLWSSMPDADLLAAADRGKLASPA
                     ALAAQVKRMLVDPKAKALVDNFGGQWLQVRKLESVKPDSKRFPDFDEYLRLSMTRETD
                     LFFGNIMREDRSILEFIDADYSYLNERLARFYNVPNVQGPEFRKVMFAQDAHRGGLLC
                     QASVLTISSYANRTSPVLRAKWVLENLV"
BASE COUNT          451 a          509 c          513 g          441 t
ORIGIN      
        1 aacattcgaa aaagttgttc agccattctt tgtgagcaac tgttttgctt gtcacgatga
       61 ggatttgcag accgctaatc tcaacctgag cgcgttcaaa agcaccgctt ccctgacgag
      121 ggaacgtgcg acgatgaaac tgattctcga caagcttaag gcgggcgaaa tgccgcctcc
      181 gaaaatgcct cgaccaaagc cggaagagct tgcggccgtg accgattggc tctcaggtca
      241 actaggtcag caaccgaagt cagcgccgac aaaccagtcg tcggacgaac cagtacgcgt
      301 aacagttcga cggctcaacc gcatcgagta cgacaatact gttcgggatc tgttgggcgt
      361 agaccttcat ctctcagaga gctttcctca agacgactca ggttatggtt tcgacaacat
      421 cggtgatgtt ttgtcgcttt cacccgtgtt aatggaaaag tatttggccg cagccgaaaa
      481 gatttcccgc acagcggttt tcggagtcga gcctgtaaag cccacgcttg tacctttacg
      541 gtctggtcag cggaaccaaa caccacaacc cacgccttta accgactacg atttgagtgg
      601 gctgagtttg ccgaacgcgg ttcacacgac gcatcgcttt ccggtggatg ctgaatacgt
      661 aattcgagct accctggcag gtgagcggcc gccaggttcc gcacccttcc aactagcgct
      721 ctggattgat ggcatccaga cacagttggt gcaggtcgat cctgcaagtc tggcctcgtt
      781 tgcgctgccg agtgagccgc aacaactatg gtcgatcaag caggagttca gagcaaaact
      841 aaccgccggc gatcactggt tggcagtcag cattccgcat ctctacgaag gactgccagc
      901 aagttacaac ggtccgaatc cttcaacgcg acctgtgcca gcacggcgac ctttcaaacc
      961 gcctccggat ctaactccta aagaaatcga ggaacggcga aaagagtttg agaagagaca
     1021 gtcggagaag gtcccggcta acggtgcccg cgttggctac ctcgaacttg gtggaccata
     1081 tgctgcaact acggggccgt cagcggagag tcaaaacaag atatatgtct gccaccactt
     1141 gaatggacac cataacaagc ggtgtgccgg tttgattctg gagaatcttg cgcaccgcgc
     1201 ctatcgtcgc caagtgagta cgagtgagat tacgccactc atccgactct ttgacgaagc
     1261 acgaacagaa acaggatcgt ttcaagaggg gctttcagta gcgattcagg cgatgcttgt
     1321 ttcgccccag tttcttttcc ggttcgagag gggcagaaca gccgctacgc cgaaacttac
     1381 gcaatacgag ttagcgtcac gcctttcgta ttttctctgg agcagtatgc cggatgcgga
     1441 cttacttgcg gccgcagatc gtggaaagct cgcctcacct gcggcgcttg cagcgcaagt
     1501 gaagcgcatg ctcgttgatc ctaaagccaa ggcgctggtt gataactttg gcggtcagtg
     1561 gctgcaggtt cgcaagctgg aatcggtaaa gcctgacagc aagcgattcc ctgacttcga
     1621 tgagtacctg cgtttgtcga tgacccgcga gactgatcta ttctttggga atatcatgcg
     1681 cgaggaccgc agtattcttg agttcatcga tgctgactac tcctacctta acgaacgtct
     1741 cgcgcgcttc tacaatgtgc ctaatgtcca gggacccgaa tttcgtaaag tgatgtttgc
     1801 tcaggatgcg catcgagggg ggttgctttg ccaggcgagt gtgttgacta tttcttctta
     1861 tgcgaatcgc acatcaccgg tgttgcgtgc aaagtgggtg ctcgaaaatc ttgt
//
LOCUS       DATCGC010002217         1177 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_99285, whole genome shotgun sequence.
ACCESSION   DATCGC010002217 DATCGC010000000
VERSION     DATCGC010002217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1177)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1177)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1177
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99285"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..248)
                     /locus_tag="VIJ87_21060"
     CDS             complement(<1..248)
                     /locus_tag="VIJ87_21060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446903.1"
                     /translation="MATVENIIEPKIAQSGQLLRILGVGFGLAVGIGGTIGVGILRNP
                     SGVAAQLGSVWMIMLAWSLGGIYCLLGANYLTELATMIP"
     gene            465..1034
                     /locus_tag="VIJ87_21065"
     CDS             465..1034
                     /locus_tag="VIJ87_21065"
                     /inference="COORDINATES: protein motif:HMM:TIGR02999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEY5446904.1"
                     /translation="MTPDNNSHQISLLLIDWSKGDDYALEQLMPLVYHELRLMARRHM
                     RRQPSGHTFQTTDLIHETYLKIAGGEARHWQSRNHFFGVAAKAMRHILVDYARSKNNQ
                     KRGGWQERVTLADNMRVTNQSSEDVVALDDALNRLAALDDRKVRVVEMKFFAGLKVAE
                     IADVLKVSPETVKRDWSFAQTWLLRELKT"
BASE COUNT          302 a          287 c          291 g          297 t
ORIGIN      
        1 gggatcatcg tcgccagttc ggtcagatag tttgcgccga gtaagcaata aattccgccg
       61 agcgaccatg ccagcataat catccaaacc gagccgagct gtgctgctac accgctgggg
      121 tttctaagaa taccgacacc gattgttccg ccgatgccga ccgcgaggcc gaaaccaaca
      181 ccgagaatcc ttagtaattg tccgctttgg gcaatctttg gttcgattat gttttcaact
      241 gtcgccattg atatttttcc tgttcattga tctggcacgt cggaacgagg gaacggacta
      301 cttcgatcca ggctcctctg ctaaggaaga gtttttgact cacctgatcc tcttaatttg
      361 attgctctaa cgggctacac gagcttcgga gcaagaaagt gtcatcgcct ctgaaaagtt
      421 ttttccggcc gtggtgtata atcccgcgca acttctcgac ccagatgacg ccagataaca
      481 actcgcatca aatctcgctt ctattaatcg attggagtaa gggcgatgat tacgcgcttg
      541 aacagttgat gccgttggtc tatcacgaac tacggttgat ggctcgaaga catatgcgcc
      601 gtcagccttc gggacacacg tttcagacta ccgacctgat tcacgaaact tatctgaaga
      661 ttgcgggagg cgaagcgcgg cactggcaaa gccgtaatca ttttttcggt gtcgccgcaa
      721 aagcgatgcg acacatactg gttgattacg cgcgttcgaa gaacaaccag aaacgtggtg
      781 gctggcagga aagggtgacg ctggcagaca acatgcgggt gacaaaccaa tcgtcggaag
      841 atgtcgtcgc cctcgacgat gctttgaacc ggttagccgc tctagatgat cgcaaagtac
      901 gtgttgtcga gatgaagttt tttgccggat tgaaagttgc agaaattgcg gacgttttga
      961 aggtttcccc agaaactgtc aaacgcgatt ggagttttgc tcagacctgg ttgctacgag
     1021 aactaaaaac ttaaagccct gctgtttgct tgtactccag cttcatttct ctgttgcgca
     1081 gagaaatatt acccacctga catgcagacg gtatcgaaga ataattctct aaatggatcc
     1141 tgaacgacta agacgaatag aaaatcttta tcacgcg
//
LOCUS       DATCGC010002218         1176 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_497028, whole genome shotgun sequence.
ACCESSION   DATCGC010002218 DATCGC010000000
VERSION     DATCGC010002218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1176)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1176)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1176
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_497028"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..812
                     /locus_tag="VIJ87_21070"
     CDS             <1..812
                     /locus_tag="VIJ87_21070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446905.1"
                     /translation="LNELASSIVTKGGRDPRTRMEDRADFCRPQALRGDSVEIHPSWD
                     RARLAEWLSIPTEKLVEAVGPSMLISLTPDSTHRHISATVQQQVLDRMRAEPGLRRIS
                     VYFHFQCLPGRVTGDVKRLDSMLARIWDGMRRLPFTDEDIAEAAGHATALFTQRFHPG
                     NSEAIASDYFGDAQEVEFSATDGSSSRGYAAKRDLLAAVRSDIRAILTDDYQKEATNI
                     ASLLWAIYSPMRLFEFEAFVRVFARQIIPSQVLMRDRVLFSPGRLKSFGLV"
     gene            complement(994..>1176)
                     /locus_tag="VIJ87_21075"
     CDS             complement(994..>1176)
                     /locus_tag="VIJ87_21075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446906.1"
                     /translation="LNRNLIWSAILRHRCDSPAMNTMKSLSASLFSTSTARRTGRTPG
                     AAVGTSPIEGLSESDG"
BASE COUNT          266 a          307 c          325 g          278 t
ORIGIN      
        1 tgcttaacga actcgcctca agcattgtga ccaaaggtgg ccgtgaccct cggacacgca
       61 tggaagaccg agctgatttc tgcaggcccc aggcgctgcg aggagacagc gtggagattc
      121 atccgtcgtg ggatcgagca cgcctagccg aatggttatc catacccacg gagaagttag
      181 tcgaagcagt gggtcccagc atgttaattt cactgacacc tgactctact catcgacata
      241 tcagtgccac cgtgcagcag caagttctcg accggatgag ggccgagcca ggactgcgaa
      301 ggatatcagt gtattttcat tttcaatgcc ttccgggtcg tgttacaggc gatgtcaagc
      361 ggttggattc gatgctggct cgcatatggg acggcatgag acgtctgcct ttcacagatg
      421 aagacatcgc tgaagcggct ggtcatgcca cggcactatt cacgcagaga tttcacccgg
      481 gaaactcaga ggcaattgcc tcggattact ttggcgatgc ccaggaggtc gaattctcgg
      541 caacagatgg aagcagctct cgcggatacg cggcaaaacg ggatttgctg gctgcagtcc
      601 ggtctgatat tcgtgcaatt cttacggacg actatcagaa ggaggcgacg aacattgcaa
      661 gcttgctgtg ggcaatctat tcgccgatgc ggttgtttga atttgaagcg tttgtgcggg
      721 tgtttgcgcg tcagattatc ccatcacagg tattaatgcg ggaccgggtg ttattctcac
      781 ctggcaggtt gaagagcttt ggactcgtct agaagattct tgcgatacgt aagccttcca
      841 ccaccgctcc tgcaaaactg tccgggtcct aaaggttgat tgtttatgct ttactcactc
      901 gacgcgaggc gtgaccggct tctgacgaac tctccttaca cgcagacatc cggagctgag
      961 cttcccggta aagttggctc actccatgag ggttcatccg tcagactcac tcagcccttc
     1021 aatcggggaa gtccccactg cagcgcccgg agtcctgccg gttcgtctcg ccgtcgacgt
     1081 gctgaataat gacgctgaga gactcttcat agtgttcata gccggagaat cgcaccgatg
     1141 ccgaagaatg gccgaccaaa ttaagttacg atttag
//
LOCUS       DATCGC010002219         1366 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_497036, whole genome shotgun sequence.
ACCESSION   DATCGC010002219 DATCGC010000000
VERSION     DATCGC010002219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1366)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1366)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1366
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_497036"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(384..1034)
                     /locus_tag="VIJ87_21080"
     CDS             complement(384..1034)
                     /locus_tag="VIJ87_21080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="PEP-CTERM proteins occur, often in large numbers,
                     in the proteomes of bacteria that also encode an
                     exosortase, a predicted intramembrane cysteine proteinase.
                     The presence of a PEP-CTERM domain at a protein's
                     C-terminus predicts cleavage within the sorting domain,
                     followed by covalent anchoring to some some component of
                     the (usually Gram-negative) cell surface. Many PEP-CTERM
                     proteins exhibit an unusual sequence composition that
                     includes large numbers of potential glycosylation sites.
                     Expression of one such protein has been shown restore the
                     ability of a bacterium to form floc, a type of biofilm;
                     Derived by automated computational analysis using gene
                     prediction method: GeneMarkS-2+.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEY5446907.1"
                     /translation="MPYLRKTGLLAITCLSLTIFGAMTVRADTVVFTNRAAFTAASTG
                     LTTINFEGIAAANSVANFASPLTLQGTTFAGSPTGAISVVDSGFFSPLFQFNSGAVLS
                     GFGFIDVTLPAGATAIGADIMSTNPDGQSFQVLLSTGAVFTVSTPARPNRGFFGITFD
                     STITSIHFTTTGIPLMDNFTFGQAQSAPVPEPVSMVLLATGLTGIVVKVRKGRKSV"
BASE COUNT          366 a          334 c          364 g          302 t
ORIGIN      
        1 ctggtagagg gcttccactg aggcacctca accgatagtt gtccaaagct ccgaactcaa
       61 actacttgat tacttcaagc cacaatccgt aacagttcaa ggattgatcc tcaacaaact
      121 aggcccagtc aacaaatctg aaaaagttct gcgcgcgagg cggtttgcgt gctgagaatc
      181 tccctgatta cttaaaacac agagggcgag taatcgccta cgaacatagt cgttacttga
      241 atccatcaat ctaaagctgg cttgatgcat attctctaac tccgaacaac taagtacgtt
      301 gatgcagcta acgctaacca gacacagagg tcgccgtcct tgatcttata attagtgggt
      361 ccaccagcca ggaggtgaaa gtcctaaaca gacttgcgtc ccttgcgcac ctttacaacg
      421 attcctgtca gccctgtagc gagtagaacc attgaaaccg gctcgggaac tggcgcgctt
      481 tgagcttgcc cgaaagtgaa gttgtccata agcggaatcc ccgtagtagt gaagtgtatt
      541 gaggtgattg tcgagtcgaa agtgatgcca aagaaaccac gatttggacg agccggagtg
      601 ctgactgtaa acactgcgcc cgtggaaagc agaacctgaa aggactgccc gtccgggttc
      661 gtgctcatga tgtcagcgcc tatagcggta gcgccggccg gcagggtgac atcgatgaac
      721 ccgaagcctg acagcaccgc gccagagttg aactggaata gagggctgaa aaacccggaa
      781 tcgaccactg aaatcgcgcc tgtgggtgaa ccggcgaacg tggtgccctg aagagttaag
      841 ggcgaggcaa agttggcgac gctattggca gcagcaatgc cttcgaagtt gatcgttgtc
      901 agcccagtcg aggcggctgt gaatgccgct cgattcgtga acaccaccgt gtcggcacgt
      961 actgtcatcg cgccaaagat tgttagactt aagcaggtga ttgccagcag cccagtcttg
     1021 cgtaggtaag gcatacgagt actccttgtt aatgtgagat gtgaaaattc ggcggtcaca
     1081 atacgagtcg tgctggatcg agtcaagtgg ttttcttgtg tcgaattgtt gactagaaga
     1141 gcttcttgcg gcaataaaga tcttcaatcg attcatacga ttcgccctct atcgtacggt
     1201 tagttctcgt ctcaagcgag gtggggcttc aggaaccgaa gactaaggga agtaagcgaa
     1261 ctgtcaccat ttcggcgagc ctctgcaaaa aactcgcagc gcacaaacga tcgcagtcag
     1321 agcaaagacc aaggtcggca aatagtggaa agctgatgat ctcgtt
//
LOCUS       DATCGC010002220         1022 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_299295, whole genome shotgun sequence.
ACCESSION   DATCGC010002220 DATCGC010000000
VERSION     DATCGC010002220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1022)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1022)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1022
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299295"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..683)
                     /locus_tag="VIJ87_21085"
     CDS             complement(<1..683)
                     /locus_tag="VIJ87_21085"
                     /inference="COORDINATES: protein motif:HMM:NF026257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEY5446908.1"
                     /translation="MSPDRESCELLREIVRPETQVSADRIARILPTIQNWDALLTLAR
                     SHGILPLLYLRVVNQQADIPRSSFERIQSDYNRNVLHSLTNAAELISVLKDLSEKSIP
                     AMPFKGVVLSATAYRDLAARPAGDLDVLIFYRDLIPAAAALLNRGYELETSTREDGSP
                     AIENYYEYHFERQSDGMVLELRWRLELTQPRFRRNLGMDWVWPAKRSTLLAGAEVPEM
                     EPEIALLVL"
BASE COUNT          259 a          270 c          254 g          239 t
ORIGIN      
        1 cacaacacta gtagagctat ctcaggctcc atttctggaa cttcggcccc tgcaaggagc
       61 gttgatctct tggccggcca cacccagtcc atgccaaggt tgcgcctgaa ccgcggctgg
      121 gtcagctcga gcctccatct aagctcgaga accattccgt ccgattgccg ctcgaaatgg
      181 tattcgtagt agttttcaat cgccggtgaa ccatcttcgc gcgttgaagt ttctagctca
      241 taacctcgat tcagtaaggc cgccgcagcc ggaataaggt cacgatagaa gatcagtaca
      301 tctaagtcgc cagctggtcg cgcggcgaga tcgcggtagg ctgtagcact aagcacgaca
      361 cctttgaatg gcattgcggg aatgctcttc tcagacagat ccttgagcac gcttatgagt
      421 tccgccgcat tggtgaggct gtgcagaaca ttgcggttgt aatccgactg aatgcgctcg
      481 aatgacgatc gaggaatatc tgcctgctga ttcacgacgc ggagatacaa aagggggagt
      541 ataccgtgac ttcgtgcaag ggtgagcagc gcatcccagt tttgaatggt cggcaggatc
      601 ctagcaattc gatcagcact cacctgagtc tcaggtcgga cgatctcgcg caggagttca
      661 caagactcac gatcaggtga cattgtgcgc gactcctctc cactcgatgt cgtcaatata
      721 tacagaactg catatttgac aggactaaac aaaacggaaa ttcagtggtg gattcagtct
      781 cgtgagactc gaacaaagac atcgctgctg atgtcagtgg cgacggaact cccactacca
      841 caatttttcc aacataagct tctctagtat ctacacacaa agtaccgagc gcgggatatt
      901 acctaaacga tgtagacgat tacttaggac aaccgagact cgtcgtaatc tctattggcc
      961 caatgcgaat cgaggtatat ttgccgagta gtcccccaaa ccccgtttcg attttggatc
     1021 aa
//
LOCUS       DATCGC010002221         1795 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_132545, whole genome shotgun sequence.
ACCESSION   DATCGC010002221 DATCGC010000000
VERSION     DATCGC010002221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1795)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1795)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1795
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132545"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(319..1356)
                     /locus_tag="VIJ87_21090"
     CDS             complement(319..1356)
                     /locus_tag="VIJ87_21090"
                     /inference="COORDINATES: protein motif:HMM:NF024921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEY5446909.1"
                     /translation="MRVRYFLAVFTFLLVSVLFSCKPKADNDHRLLVYTPHGQDLLRD
                     FVSRYKQKYPESEVQFLDMGSRQILERVRVEKNRPQADVWWGAADTTFQIAAEENLLA
                     EFRPSWADKVPESARDPQSRWFGTYETPQVIAYNSDAVSAADAPHDWDDVLDPKWHDK
                     ILIRNPNPSDTMRAIFGAMIGRFYKDTGTPDKGYDWLRKLDANVHEYTADGTLLMQKL
                     ARREGLITLWDMPDVRLFKEQKNLPVAYNLPSSGTPVITDGIAIIRGAQHEEEARRFY
                     EFVTTPESLEYAAKTYYRIPVRTDLDRSQLPAWMNEPFTRMPVDWDLLRKQGSEWLRY
                     WDTEIRGRSKQ"
     gene            1403..1795
                     /locus_tag="VIJ87_21095"
     CDS             1403..1795
                     /locus_tag="VIJ87_21095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446910.1"
                     /translation="MLARRAEISDSSIGFSEGITGSGEIELASLGGLCSDPMKMSSVK
                     RRIARAGGWGIAKRIIKPIPIIGSVFAFGLAGYEIKKKGLIPGAVHVGLDVTPVVGTA
                     KSLLEIFTGDLIPDKKDRRKKLKPPPIK"
BASE COUNT          433 a          446 c          477 g          439 t
ORIGIN      
        1 gattaaaggc ggaagcggcg ggccgctacg gataattgcg atgatgtagg atgagcgatc
       61 aaaaagatca tcggtcagat atcatttgac atttttcagt tggtcattga gcagaactcc
      121 gattgcaatg gagtcagtac cacaacgcgg tagcgtgtgg cttagtgttg cgagtcgtca
      181 caactcaact tggatttggg tcgagccaca cgctaccgcg ttgtggtact gactctatcg
      241 ccactaagcc acaactcccg cgaccaaatg acaaatgaaa aatgtccaat gacaaatgac
      301 caataaatct tttcctgcct actgcttact cctcccccgt atctccgtgt cccagtatct
      361 taaccattcg ctgccttgtt ttcgcaacaa gtcccaatcg actggcatcc gtgtgaatgg
      421 ttcgttcatc caggccggga gttgtgaacg gtccaggtct gtgcgcacag gtattcgata
      481 atacgtcttg gccgcatact ccagactttc cggtgtggtc acgaattcgt agaaccgtcg
      541 tgcctcttct tcgtgttgtg cgccccggat gattgcgatg ccgtcggtga tgactggcgt
      601 tcctgaagag ggcaggttgt aagcgaccgg caggttcttt tgctctttga aaaggcggac
      661 gtccggcatg tcccacaaag tgatgagccc ctcacgtcgg gcgagttttt gcatcagtaa
      721 ggttccatcg gcagtgtatt cgtgaacgtt ggcgtcaagc ttgcgcaacc agtcgtagcc
      781 tttgtccggc gtgccggtat ctttgtaaaa cctgccaatc atcgcgccga aaatggcgcg
      841 catcgtgtct gacggatttg ggtttcgaat caggatcttg tcgtgccact tgggatcaag
      901 aacgtcatcc caatcgtgtg gcgcatcagc agcactgacc gcatcactgt tgtaagcgat
      961 tacctgtggc gtttcgtaag tgccgaacca acgactttgt ggatcccgtg ctgactcggg
     1021 gaccttatcg gcccaacttg ggcgaaactc agcgaggaga ttttcttcgg cggcgatctg
     1081 aaaagttgtg tcagctgctc cccaccagac gtcagcctgt ggacgattct tctcaacacg
     1141 gacacgttcc agtatttggc gcgaccccat gtcaagaaac tgaacctccg attccggata
     1201 cttctgcttg taacgactaa caaaatcacg gagcaggtcc tggccgtgcg gcgtataaac
     1261 cagcaaacga tgatcgttgt ctgccttggg cttgcaggag aaaagaactg agaccaacag
     1321 aaatgtgaag acagcgagaa agtatctgac gcgcatctaa ggttcgctcg ttgaaggcgg
     1381 ttgaaatgat tggtacagcc agatgctagc acgtcgagca gaaatttcgg attcttccat
     1441 cggatttagc gaaggaatta cgggcagcgg ggaaatcgag ctggcaagtc tcggtggttt
     1501 atgttctgat ccaatgaaga tgagtagcgt caaacgaaga atagccaggg ctggcggatg
     1561 gggaatcgcg aagcgaataa tcaaaccgat cccgatcatc ggttcagtct tcgcgtttgg
     1621 cctggcaggc tatgagataa agaagaaggg acttatcccc ggcgctgttc acgttggtct
     1681 cgatgtaact cctgttgtcg gcacagctaa aagtcttctg gagatcttca ccggcgatct
     1741 gattccggat aaaaaggatc gcagaaaaaa actcaaacct cctcctatca agtaa
//
LOCUS       DATCGC010002222         1359 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_232762, whole genome shotgun sequence.
ACCESSION   DATCGC010002222 DATCGC010000000
VERSION     DATCGC010002222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1359)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1359
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232762"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            289..846
                     /locus_tag="VIJ87_21100"
     CDS             289..846
                     /locus_tag="VIJ87_21100"
                     /inference="COORDINATES: protein motif:HMM:NF022018.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ORF6N domain-containing protein"
                     /protein_id="HEY5446911.1"
                     /translation="MPFTSIAIPDELLEQTILLIRGHKVILDRDLARLYGVSTKALNQ
                     AVKRNVDRFPDDFMFQLTMDEASAELVPMTERLRSQIVTLKKPRGKHLKYRPYAFTEH
                     GILMLSSVLKSERAVQVNIQIMRTFVRLRELLTSNVELVRRLDDLEETYDENFRVVFK
                     AIRQLMASPAPKGKPIGFIPKSLKK"
     gene            1090..1335
                     /locus_tag="VIJ87_21105"
     CDS             1090..1335
                     /locus_tag="VIJ87_21105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446912.1"
                     /translation="MKVELPNYLHNPFHNRFNDPVSQRQDELESEGYMVWLRERNLEH
                     SGYKIPSVEASTANSLRGVLALLLVIVVSMVFLVKVW"
BASE COUNT          352 a          323 c          337 g          347 t
ORIGIN      
        1 gcgttttgta agtatttgga gatggctagg gtgctctagt acagaatctc gcaaatagac
       61 agtttgcaat tattcagctg ccaactaatc aggtagctat gatcatcgac ttagcaccaa
      121 aagtgaaaag acattgggca gcattcgtct cggtgagttc gtcgagatac ctgctacaaa
      181 cacgtgagcc aagctggact caatcacgaa cctagaaagt tggcttttca ccggtccggt
      241 tactgcgtaa aatgccacgc aaaatctagc ttcatgaaag gacctcacat gccttttacc
      301 tctatcgcaa ttcctgacga gttgcttgaa caaacaatcc ttctcattcg tgggcacaaa
      361 gtgattctcg atcgcgacct cgcacggttg tatggagttt cgacgaaggc actgaatcaa
      421 gccgtgaaac gcaatgtcga tcggttcccg gacgacttta tgtttcaact tactatggat
      481 gaggcgagcg ctgagttggt gcctatgact gagcgtttaa ggtcacaaat tgtgacctta
      541 aagaaacctc gcggaaaaca ccttaaatat cggccttatg cgtttaccga gcatgggatc
      601 ctgatgcttt cgagtgttct aaagagtgag cgtgcagtac aggtaaacat tcaaatcatg
      661 cgaacgtttg taagactccg cgagctactg acttcaaatg ttgaattggt gagacgcctt
      721 gacgatctcg aggagactta cgatgagaac tttagagttg tttttaaggc cattcgtcaa
      781 ttgatggcct cacccgcccc gaaggggaaa ccgattggat tcattccaaa gtcattgaag
      841 aaatagtcat ctcgaaggcg cgctccgtga gtcccgtgtt tcaacccttt gcggttgaat
      901 cccgtttgcc cgagttcgtg tagaagcttg acgttatcgg gcagacgccg gctctcaact
      961 gccaaagaca ttcaactatt cagccaaaat ccgatgaact acgacgaagc ctcatccggc
     1021 atgggtgttg ccaattgtcc ggctaggcgc tgagcccctc caccacaggc gccggaagga
     1081 caacagaata tgaaagtcga attacccaat tacctccata atccattcca caatcgcttt
     1141 aacgatccgg tttcgcaacg tcaggatgaa ctcgagtcgg agggctacat ggtttggcta
     1201 cgcgaacgga atctggagca cagcggttac aagattccct cagtagaggc ctcgaccgcg
     1261 aatagcctgc gaggagtttt agcgctcctg ctggttattg tggtctcgat ggtgtttctg
     1321 gtgaaggtgt ggtgagtccg ttgataaatc ttcaggttg
//
LOCUS       DATCGC010002223         1074 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_264253, whole genome shotgun sequence.
ACCESSION   DATCGC010002223 DATCGC010000000
VERSION     DATCGC010002223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1074)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1074)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1074
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_264253"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..879)
                     /locus_tag="VIJ87_21110"
     CDS             complement(<1..879)
                     /locus_tag="VIJ87_21110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446913.1"
                     /translation="MDLIKRFCSMEPQQRRRYTLDALKRVCVRESRRQTLLLVFEDLH
                     WIDHETQAFLNLLVDSISMAPVMLLVNYRPGYSNDWSEKSYYAQLRVEPLQSTSAEEL
                     LSTLLGKNPDLIPLKRLLIERTEGNPFFAEESVRSLVETGVLTGEKGAYRPALQVDNL
                     AIPSTVQNVVADRIDRLPIDEKHLLQTAAVIGVNFPFTLLRAVTELSEETLQTSLSHL
                     QSAEFLYETTLFPDLEYTFKHALINEVAYRGLLHERRRLLHSQVLTALEQIKQESASH
                     DHLEKLAHHALQGELWE"
BASE COUNT          245 a          275 c          291 g          263 t
ORIGIN      
        1 ttcccaaagc tcaccctgaa gtgcgtggtg cgcaagtttt tcgagatggt cgtgcgaagc
       61 actctcctgc ttaatctgtt ccaacgcagt tagcacctgc gaatgcagca gtctgcgacg
      121 ctcgtgcaac agtccgcgat aagcgacctc gttaatcagt gcgtgcttga atgtatattc
      181 taggtccggg aagagcgtgg tttcgtagag aaattccgcg gactgaagat ggctaagaga
      241 cgtctgcaag gtttcctcgg agagctccgt gaccgcacgc aagagtgtaa aaggaaagtt
      301 aacaccaatc acagcggccg tttggagcaa gtgtttctca tcaattggca accggtcaat
      361 gcgatcggcc accacgttct gcacggtgct tggaatagcg agattatcga cctgcagcgc
      421 cggtcggtat gcgccctttt caccggtcaa gacgccggtt tccaccagcg atcgcacgct
      481 ttcctcagca aagaacggat ttccttcagt gcgttcgatc aatagccgtt tgagcggaat
      541 tagatccggg ttcttgccca gcaacgtgga caacaattct tcagcgctgg tcgactgaag
      601 cggctccacc cggagttgag cgtaatagct tttttccgac cagtcgttgc tgtagccggg
      661 gcggtagttg actaggagca tgacgggcgc cattgagatg ctgtcaacaa gaaggttcag
      721 aaacgcctgt gtctcatggt cgatccagtg gaggtcttca aaaaccaaca gcagagtttg
      781 cctcctgctc tcccggacac aaacgcgttt tagggcatct agcgtataac ggcggcgctg
      841 ctgcggttcc atcgaacaaa aacgtttgat tagatccaca agatctgacg gatatgttgt
      901 ctggttaagg tcctgttccg ggctaattgg gtcgtctggt aagacgccaa gtagcgacag
      961 aatcggtggg attgcgtctt ttaggccgct gtccagttct aaaacctgcg ttaccacctt
     1021 gtctttggtc tgcccactgt cttcaccctg ggcgatattg aaataacgat gcaa
//
LOCUS       DATCGC010002224         1024 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_232801, whole genome shotgun sequence.
ACCESSION   DATCGC010002224 DATCGC010000000
VERSION     DATCGC010002224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1024)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1024)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1024
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232801"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            290..>1024
                     /locus_tag="VIJ87_21115"
     CDS             290..>1024
                     /locus_tag="VIJ87_21115"
                     /inference="COORDINATES: protein motif:HMM:TIGR03718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TerC/Alx family metal homeostasis membrane
                     protein"
                     /protein_id="HEY5446914.1"
                     /translation="MVVLFPFSEYWWFYLAFVGLVLLLLSLDLGVFHRKAHAVSFRES
                     AIWSAVWIALALLFNLALYNYALWKFPQDPRLMAIPGFDPHAAAARVALEYLTGYVVE
                     KSLSVDNIFVFVMVFSYFGVPAKYQHRVLFYGILGALGFRAIFVTLGAALMQYHWVVL
                     IFGVFLLITGVKIFVAKEKPVKPEKNLLIRLLRRLIPVTHEREGSKFFVRKNGALFAT
                     PLLVCLVFLEATDIVFAVDSVPAIFAL"
BASE COUNT          204 a          263 c          258 g          299 t
ORIGIN      
        1 cgtcactaaa gggaaccgct ctctttgtac ggttcactcg catcctgtaa tattctttcg
       61 tagaagaggg gagtaggttg cccacgttga gtgggtctgg tggtaacgtc aacacgttgt
      121 tcctcctgtg aacaaccggg ccaccgggaa gagcacaagt tacagctcat taaccaagac
      181 cttttgcggc taattatctg gcccgcaaaa ggttttttcc ttttgagggt cgaaacggat
      241 tgggttcaaa ccagtccact ccggacacaa tccacgaaag gaattgttaa tggtggtcct
      301 ctttcctttt tctgaatact ggtggtttta tcttgctttt gtcggtctcg tacttctgct
      361 actcagcctg gatctcggag tctttcaccg caaagctcac gcagtaagtt ttcgcgaatc
      421 cgcgatctgg agcgccgttt ggattgcgct cgccctactc ttcaacctgg cactctacaa
      481 ctacgcgctc tggaagtttc cgcaagaccc acgcctgatg gcaataccgg gatttgatcc
      541 acacgccgca gccgcgcgtg tggcgcttga atacctgact ggatacgtcg tcgaaaaatc
      601 actttcagtc gacaacatct tcgtcttcgt gatggtgttc agttacttcg gagtgcctgc
      661 aaagtatcag catcgggttc tcttctacgg cattctcggc gcgcttggat ttcgagcaat
      721 cttcgtcacg cttggtgcgg ccttgatgca gtatcactgg gtcgtcttga tctttggtgt
      781 cttcttgctg atcactggcg tcaagatctt tgtcgcgaaa gaaaagcctg ttaagccgga
      841 aaagaatttg ctgattcggt tgttgcgtcg tttgattccg gtcacgcatg agcgcgaagg
      901 tagtaagttt ttcgttcgca aaaacggtgc gctgttcgcc acaccattgc tcgtgtgtct
      961 tgtgtttctg gaagccactg acatcgtctt cgccgtcgat tcggtaccag cgatctttgc
     1021 gctg
//
LOCUS       DATCGC010002225         1514 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_232831, whole genome shotgun sequence.
ACCESSION   DATCGC010002225 DATCGC010000000
VERSION     DATCGC010002225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1514
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232831"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..583)
                     /locus_tag="VIJ87_21120"
     CDS             complement(<1..583)
                     /locus_tag="VIJ87_21120"
                     /inference="COORDINATES: protein motif:HMM:NF012373.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="complex I subunit 1 family protein"
                     /protein_id="HEY5446915.1"
                     /translation="MLLFAPVNVLNDLLLKFFSADTINYFVWPLIQIGLVVSLVAGWV
                     AYATYLERKISAFMQARLGPMRVGPWGLLQPIADGLKLLVKEDFIPEKADRWIFFFAP
                     YIAVASAFIVFSVVPFGPDWAVIADVNIGLLLVLAVSSVGVLALILAGWSSNSKYALL
                     GGLRSSAQMVSYEVAMGLALLGGLMFARTLSLSG"
     gene            complement(679..>1514)
                     /locus_tag="VIJ87_21125"
     CDS             complement(679..>1514)
                     /locus_tag="VIJ87_21125"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF012566.4"
                     /note="Catalyzes the transfer of electrons from NADH to
                     quinone; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit D"
                     /protein_id="HEY5446916.1"
                     /translation="EVPPRAHYLRTILTELNRIASHLLWLATHALDIGAITVLLWALR
                     EREEILKIFERQFGARLTCHAWRVGGMTNDAYDDFHKDVRQFVNIFPKRIDEYETVLS
                     ENRIWLSRTVGIGVISGPEAIAIGLSGPALRGSGVAWDIRKSRPYAAYADMEFDVPLG
                     ENGDTYDRYLVRIEEMRQSRRIIDQALEKMPDGPVTAKLPKIVKPPVGDYYHSIEGPK
                     GEIGCYLVSDGSAQPYRVRVRPPSFINLQALRQMCIGHLVADVVAIIGTLDIVLGEID
                     R"
BASE COUNT          418 a          424 c          347 g          325 t
ORIGIN      
        1 ttcctgaaag cgacaacgtc cgcgcaaaca tcaatccgcc aagcaacgcc aaccccatcg
       61 ccacttcgta agaaaccatc tgcgcgctcg aacgaagacc accgagcagc gcgtatttcg
      121 agttagacga ccagccagca agtatcaacg ccaggacacc cacgctcgat actgcaagca
      181 cgaggagtaa tccgatgttc acatcagcaa tgactgccca atccggtccg aaaggcacaa
      241 ccgagaacac gatgaacgcc gaagcaactg ctatgtaagg cgcaaagaaa aagatccacc
      301 ggtctgcctt ctccggaatg aagtcttcct tgaccagcaa cttcaatccg tcggcgattg
      361 gctggagcaa tccccatggc ccaacacgca tcgggccgag acgcgcctgc atgaacgcag
      421 aaatttttcg ctcaagataa gtggcgtaag ctacccaacc ggcaaccaac gaaactacga
      481 gcccgatttg aatcaacggc caaacaaaat agttaattgt atccgcgctg aaaaacttca
      541 gcagcagatc gttaagcacg tttactggag cgaatagcaa catatttatt tgaatgtccg
      601 ataaacttca gtttgtcgtt gacctgcgga agtatcgccc aagttctaag cgacaaactg
      661 aagtttatcg gacaacgact atcgatcgat ctctcccaac acgatatcga gcgtaccaat
      721 gatggcaacg acgtctgcca cgagatgccc aatacacatt tgccttaatg cctgcagatt
      781 aataaaggac ggcggtctta ctcgaactcg ataaggctgt gcgcttccgt cagaaacaag
      841 gtaacaaccg atttcgcctt tcggtccttc gattgagtgg tagtagtcac caacaggtgg
      901 cttaacgatc ttcggcagct ttgcggtaac cgggccatcc ggcatcttct caagagcttg
      961 gtcgatgatt ctacgcgact gtcgcatctc ctcgatgcga acaagatatc gatcatacgt
     1021 gtcgccgttc tctccgagcg gcacgtcgaa ttccatgtca gcatacgctg catatggtcg
     1081 cgattttctt atatcccacg cgacacctga accgcgtaac gcaggtcctg agagaccgat
     1141 cgcgattgct tccggaccag aaatcacgcc gataccaacc gttcgactta accagattcg
     1201 gttttcagaa aggacggttt cgtactcgtc aattcgtttt ggaaatatat ttacaaattg
     1261 ccgaacgtct ttatggaaat cgtcataggc gtcatttgtc attccaccaa cacgccacgc
     1321 atgacaagta agacgagcac caaactgacg ttcgaagatt ttcagtatct cttcgcgttc
     1381 gcgaagcgcc caaagcaaga ctgtgatggc gccaatatcc agggcgtgcg tcgctaacca
     1441 aagcagatgc gacgcgattc gattcaactc ggtcagaatc gtgcgcaggt aatgggcgcg
     1501 cggcgggact tcca
//
LOCUS       DATCGC010002226         1084 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_163072, whole genome shotgun sequence.
ACCESSION   DATCGC010002226 DATCGC010000000
VERSION     DATCGC010002226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1084
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163072"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..470)
                     /locus_tag="VIJ87_21130"
     CDS             complement(<1..470)
                     /locus_tag="VIJ87_21130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446917.1"
                     /translation="MLAYVFWHWPQSTIERQLYEDLLVSFQRTLKSYRPDGLKEAAIF
                     RVSQMPWIGHDGDAYEEWYLLEDSAALDRLNRAAVSGACEEPHNRVAMQAAGGVAGLY
                     RLRTGEETLTQSRVATWFTKPSGLSYNHLESTLQPVISPPGTGLWGRQMTLGPTP"
     gene            complement(509..976)
                     /locus_tag="VIJ87_21135"
     CDS             complement(509..976)
                     /locus_tag="VIJ87_21135"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEY5446918.1"
                     /translation="MALEEGKRFADFSLKNQDGETVSLNDFGGKWLVVYVYPKDDTPG
                     CTIQGKSFTATRQEFDDANISVVGVSEDDVDSHKSFCNKFSFTIDLLADPNHELLKAA
                     GVEQSEYKGTMYWNRTSFVIDPEGNLRKRYDKVNPDGHERVLLNDIKAMQSQG"
BASE COUNT          234 a          280 c          272 g          298 t
ORIGIN      
        1 ggtgttggac cgagggtcat ctgccggccc cacagaccag tgccaggcgg tgagatcaca
       61 ggttgcagtg tggattcgag gtggttgtag gaaagtccgc tcggttttgt aaaccaggta
      121 gcgactctcg attgtgtcag ggtttcttcg cctgttctga gccgatataa accggcgaca
      181 cctccggcag cctgcatggc aacgcgattg tgaggctctt cgcaagcgcc agataccgcc
      241 gcacggttga gtctatccag tgcagccgaa tcctcaagta gataccattc ctcatacgca
      301 tcgccgtcat gaccaatcca tggcatctgt gagacccgaa agattgcggc ctccttgagg
      361 ccatctggtc tgtatgattt cagtgtgcgt tgaaagctca ctaaaagatc ttcatacagc
      421 tggcgttcga tagtggattg tggccaatgc cagaagacgt aagcgagcat cttacctttc
      481 agtgggcttg gtttagttct gcacctaact agccttgcga ctgcattgct ttgatgtcat
      541 tcaacaaaac gcgctcatgc ccgtctggat ttaccttgtc gtatctcttt cgcaaattgc
      601 cttccggatc gatcacaaag ctggtgcggt tccagtacat cgttcccttg tattcgcttt
      661 gttcgacacc tgctgctttg agtagttcat gattcggatc cgcaagcaga tcaatcgtga
      721 aactaaactt gttgcagaag ctcttgtgtg agtcgacgtc gtcttcacta acgccaacaa
      781 ccgaaatgtt tgcgtcgtcg aattcctgcc ttgtcgcagt gaatgacttg ccttggatcg
      841 tgcagccagg tgtgtcgtct tttgggtaga cgtaaacaac caaccattta ccgccgaagt
      901 cgttcagtga aacggtttcg ccgtcctgat tcttgagtga aaaatctgca aagcgctttc
      961 cttcttcgag agccattgtg ttttccttgt tcgatgaaat gttaatccgc tgcgagtcta
     1021 acagacgccg agacgacatc gcctgttgag acgccagttt ccttcagcac gttggtgtca
     1081 acca
//
LOCUS       DATCGC010002227         1621 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_497138, whole genome shotgun sequence.
ACCESSION   DATCGC010002227 DATCGC010000000
VERSION     DATCGC010002227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1621)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1621)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1621
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_497138"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..607)
                     /locus_tag="VIJ87_21140"
     CDS             complement(<1..607)
                     /locus_tag="VIJ87_21140"
                     /inference="COORDINATES: protein motif:HMM:NF024120.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase family 28-related protein"
                     /protein_id="HEY5446919.1"
                     /translation="MQTKIICALFTLLLLSLSINSQSTTPTCSYSSLWGVNGEKWDLH
                     GRLPDFSYSGYHAGEQQLPQRKATFDLKRDFHAVGDGKTDDSTALINALNSMKRGVLF
                     IPKGTYVISKRIDIDKANLVIRGAGPNETVLLFPNSLTDLFGNNAKGTEQSQWSFRPG
                     LINVTGQDPINSETRLAGVVTPVPRGTTRLELSNSLSIKEGE"
     gene            822..1562
                     /locus_tag="VIJ87_21145"
     CDS             822..1562
                     /locus_tag="VIJ87_21145"
                     /inference="COORDINATES: protein motif:HMM:NF018613.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446920.1"
                     /translation="MLRKVLLLSASAGAGHIRAAQALEKAFNELGTVDEVRHLDVLNY
                     TNKVFRHFYSKAYIDLVNKMPEVPGWMYDKLDRPWKNERRRLALDKLNTRPLVKLLRD
                     YQPDMIVCTHFLPAEIVSWLKAKERLASRQAVIVTDFDVHAMWLVHHYEQYFVAIDEA
                     RAYLEALGIPANKITVSGIPIDPVFAEKKSKVEMRKKHGLESDRVTILLSAGGFGVGS
                     VEPLIAALMPLQQRAQVVAICGRNEELR"
BASE COUNT          408 a          376 c          430 g          407 t
ORIGIN      
        1 actctccttc cttgattgaa agtgagtttg atagttcgag tcgggtcgtg cctcgtggca
       61 caggcgtgac tacgccggca aggcgggtct cactgttaat tggatcctgt ccagtcacgt
      121 tgatgagtcc tggacgaaag gaccactgag attgctcagt tcctttggcg ttatttccga
      181 aaaggtctgt tagtgaattt ggaaacaaaa ggacagtctc atttggacca gccccgcgaa
      241 tcaccaggtt tgctttgtcg atatcaatac gcttcgaaat gacgtaagtg cccttcggaa
      301 tgaaaagcac gcctcgtttc attgagttca gtgcattgat aagggcggtt gaatcgtctg
      361 tcttcccatc accaacagcg tgaaagtctc gtttgagatc gaaagtggct ttgcgctgcg
      421 ggagttgttg ttctccggcg tgataaccgg agtatgaaaa gtcaggtaga cgtccgtgca
      481 gatcccactt ttctccgttg acaccccaga gagacgagta agagcaggtt ggtgtcgttg
      541 attgagaatt aatgcttaag gaaagaagta gcaaagtgaa tagggcacag atgatttttg
      601 tttgcatgag ttgtttgatc gaccgcaggg aatatatcaa atcggttcga cgggccgatg
      661 aagtcagtac cataacgcgt atggcgctgg accgagtaga gtgattctcg aaattctgcg
      721 aggcacgcgc tatcgcgtcg tggtacagac ctcatcgccc cactcgatag aacgaaatac
      781 tctcttgtct tcatcgttgg tcctgcggca aagtaataac gatgcttaga aaagtcctct
      841 tgttatccgc ttccgcaggt gccggtcata tacgcgccgc gcaggctctt gaaaaggcgt
      901 tcaatgaact gggcactgtc gatgaggttc ggcacctcga cgttctcaac tacacaaaca
      961 aagtgtttcg acatttctac tccaaggcgt acatcgatct cgtcaacaaa atgcccgaag
     1021 tgccgggctg gatgtacgac aagcttgatc gtccatggaa gaacgaacga aggcgactag
     1081 cgctggataa gctgaacact cgccctctag taaagctact tcgtgactat caaccggaca
     1141 tgatcgtatg tactcacttc cttccggctg agattgtttc gtggctcaaa gcgaaggaga
     1201 gattagccag tcgacaagca gtcatcgtca cagattttga tgtccatgca atgtggcttg
     1261 ttcatcatta tgaacagtat tttgtcgcaa tcgacgaagc gcgcgcctac ctcgaagcat
     1321 tggggattcc cgcaaacaag attaccgtga gcggaattcc gattgacccg gtgttcgctg
     1381 aaaagaaaag caaagtcgaa atgaggaaga agcacggact tgagtcagac cgtgtgacaa
     1441 tcttgttgtc ggccggcggt tttggtgtgg gctctgtcga accattgatt gccgccttga
     1501 tgccgcttca gcaacgagca caggtcgttg cgatttgtgg tcgtaatgaa gaattgcggt
     1561 agcgcttatc caaaacggcg gcacgagcca aagctgacga caatgtgctg atcaaaccca
     1621 t
//
LOCUS       DATCGC010002228         2069 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_396340, whole genome shotgun sequence.
ACCESSION   DATCGC010002228 DATCGC010000000
VERSION     DATCGC010002228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2069)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2069)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2069
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_396340"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(105..701)
                     /locus_tag="VIJ87_21150"
     CDS             complement(105..701)
                     /locus_tag="VIJ87_21150"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: protein motif:HMM:NF024214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0061603 - molybdenum cofactor
                     guanylyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HEY5446921.1"
                     /translation="MDQIEAFILAGGASSRMGTDKSQLLIEQESFTQHIAKTLFNITN
                     SVTVVGRNVDDSNLRVAMDVYPRWGALGGLHGALNACQREWAIVVACDLPFVTIELFE
                     WLMKERAGYDTVVPIQPDQRPQPLCALYRIRPCLEHATALIEMGKRRPLDLLEAVNTR
                     WVSFSEIADLPEAQNFFLNINTPADYYEATKKAAALKT"
     gene            916..>2069
                     /locus_tag="VIJ87_21155"
     CDS             916..>2069
                     /locus_tag="VIJ87_21155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446922.1"
                     /translation="MNRLFSVLSIFAMILVVTGIANAQRVVAPFANGTPLFPLEDIRP
                     GMKGTARTVFSGTEAEDFGVEVLGVIPGFPGPRQSAIIARLSGANAERTGVFAGMSGS
                     PVFIDGKLVGAIAFSFPFSKEPIAGITPIKQMIDLFNKGSENENLKPREPRAVSFSQL
                     ASTEWKPSLPKPAVSSVSLVSPVAANSPLIPLLGQQMTPIATPLVFSGISQDTLAMFT
                     PQLVANGLLPVSGAGGAAAITPLAPSDEKTFPVGSSISVQLVRGDYSLAAAGTVTLRD
                     GDRIYAFGHPFLSLGTSDMPMTECSVVTVIPNVNNSFKLAVPGKMVGSISQDRASGIF
                     GLLKQAPKMIPVKINLHTSRDKTETYSYEIANDSFLTPLLLNITVFNTITS"
BASE COUNT          471 a          529 c          544 g          525 t
ORIGIN      
        1 gcgattacca gcactatcgg gagcagtgat ctgacaagtc gcttaccgaa tcttcgtttt
       61 ggtggcatta gcgtcgatga cgtttgactc ggtctggcgt cagcctaggt cttgagagct
      121 gcggcctttt tagtcgcttc ataatagtct gccggggtgt tgatgttaag gaaaaagttc
      181 tgcgcctccg gtagatccgc tatttcactg aatgaaaccc agcgggtatt aaccgcttcg
      241 agtagatcaa gtggacgtcg cttacccatt tcaatgagtg ccgtcgcgtg ctccaggcaa
      301 ggtctgatgc gatagagcgc acatagaggt tggggacgct gatctggttg gattgggaca
      361 acagtgtcgt acccagcgcg ttccttcatc aaccattcaa acaattcaat agttacaaaa
      421 ggcaggtcgc aagcgacaac aattgcccat tctctctggc aagcgttcaa agcaccgtga
      481 agtccaccga gtgctcccca ccggggataa acatccatgg cgacacgtag atttgaatcg
      541 tctacatttc tgccaacgac cgtgaccgag ttggtaatgt tgaaaagcgt ctttgctatg
      601 tgctgcgtga aggactcctg ttcaataagc aactgagact tgtcagtgcc cattctgctc
      661 gatgctccgc ccgcgaggat gaaagcttcg atttggtcca tacgctttgg gtcgaaaact
      721 gaagggggcc ccacctgagt tccacgttag catgcgggtc gagaaggagc aacggggtag
      781 tagagagcta ctttcactaa agccttaacc ttgaccgact tcttttgcga agcttatagt
      841 cgctgtcgtg tcatgggtct gacttttggc atcatagtga gacggaattt gtagttacgc
      901 atgaggtagt tttgaatgaa tagacttttc tcagtcctct cgattttcgc aatgattctg
      961 gttgtgacgg ggatcgctaa cgcccagagg gtggtcgcgc cctttgccaa tggaactccg
     1021 ttattccccc tcgaagacat tcggcctgga atgaaaggaa ccgctcggac agtctttagc
     1081 gggacggagg ctgaagactt tggggttgaa gttctcgggg tcatcccggg attcccgggc
     1141 ccgcgacagt cggcaatcat tgccaggctc agcggcgcaa acgccgagag aaccggagtg
     1201 tttgcgggaa tgtcgggctc cccggttttt atcgacggca aactcgtcgg cgcaatcgcc
     1261 tttagttttc ctttttcgaa agagcctatc gccggcatca ccccaatcaa gcaaatgatt
     1321 gatctcttca ataagggttc tgagaatgaa aacctcaaac ccagggagcc gcgcgcagtt
     1381 tccttttcac aacttgcttc aaccgaatgg aaaccaagtt tacccaagcc agccgtttcg
     1441 tctgtttcgt tggttagccc ggtcgcggca aattcgccgc ttataccgtt gcttggtcaa
     1501 caaatgacac cgatagcgac gcctctcgtg tttagcggaa tcagccagga cacattggcg
     1561 atgtttaccc cacaactggt cgcgaatggt ttattgccgg tttcaggcgc tggcggtgcg
     1621 gcggcgatca caccgcttgc tcctagtgac gaaaagacct ttccagttgg gagttcgatc
     1681 agtgttcaac tggttagagg cgattactcg ctggctgctg cggggacagt cacgctgcgg
     1741 gatggcgatc gcatttatgc ttttggccat ccgtttttga gccttgggac atcggacatg
     1801 ccgatgacgg aatgttcggt ggtcaccgtg attcccaacg tcaacaactc cttcaagctc
     1861 gcagtgcctg ggaaaatggt cggatcgatt tcacaggatc gcgcttcggg tatcttcgga
     1921 ttgctgaaac aggctccaaa aatgatcccc gtaaagataa acctccatac gagccgcgat
     1981 aagaccgaga cttattcgta tgagatcgcc aacgattcgt tcctaacacc attacttctg
     2041 aatatcaccg tcttcaatac catcacctc
//
LOCUS       DATCGC010002229         1450 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_99447, whole genome shotgun sequence.
ACCESSION   DATCGC010002229 DATCGC010000000
VERSION     DATCGC010002229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1450)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1450)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1450
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99447"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            124..>1450
                     /locus_tag="VIJ87_21160"
     CDS             124..>1450
                     /locus_tag="VIJ87_21160"
                     /inference="COORDINATES: protein motif:HMM:NF045042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnogalacturonan lyase"
                     /protein_id="HEY5446923.1"
                     /translation="MPANSPVRQYLSVSLKTPEGYSPNDASVGDLDGDGEYELVVHQV
                     GRGRDNSQAGITTEPILEAYKLDSTLLWRINLGKNIREGAHYTQFMVYDLDGDGRAEI
                     ACKTADGTTDGTGKVIGDAKADYREPEGAAITFKNPRSGKEEKHNVSGYVLSGPEYLT
                     IFDGLTGAALTTTNFNPPRHPTSLKPTGDELAALWGDGYGNRVDRFLACIAYLDGVRP
                     SLVMSRGYYARSVITAWNWRDGKLSQVWSFDSDSSAENRKFRGQGNHNLSVADVDGDG
                     RDEIIFGAAVIDDNGTGLYSTGLGHGDALHVTDLDPDHPGFEVFDIQERFDDAGASFR
                     DARTGEIIWKKPSIQAGSDGEGPGRGLALDIDPRYRGYESWVRGAGVVGLWNAKGEKI
                     SDKTPGSCNFGVYWDGDVLSELLDRNTISKWNPVDASETVLLRADGCTSN"
BASE COUNT          349 a          339 c          419 g          343 t
ORIGIN      
        1 cagcagccgc ttgttgctgc ttcgagtttt gttgacgagc atgcagatct cacatcatcg
       61 aacacatatt ttgttcggcc tgttttaaat agacgtgaag gagcaccaag tgcttcgttc
      121 atcttgcctg ccaattctcc cgttcgacag tatctgtctg tttcgctgaa gacgcccgaa
      181 ggctactctc caaacgacgc ttccgtcgga gatctagatg gcgatgggga atacgagttg
      241 gtcgtgcacc aggtcggacg tggacgcgat aactcacaag caggaatcac gaccgaacca
      301 attctcgaag cttacaaact cgacagcacg ctgttatggc gtatcaatct tggcaagaac
      361 attcgcgagg gcgctcatta cacccaattc atggtctacg atcttgacgg cgatggcaga
      421 gcagagattg cttgcaagac ggctgacgga acaaccgatg gaacgggcaa ggtaataggg
      481 gatgcgaagg ccgactatcg cgagcccgaa ggggcagcca tcactttcaa gaatccccgg
      541 tcgggcaagg aagaaaaaca caacgtcagt ggctatgtct tgtctggccc tgagtacctg
      601 acaatcttcg atggtctgac gggagcggca ctcacaacga ctaacttcaa tcctcctcga
      661 catccgactt cgctaaaacc aacgggtgat gagttagctg cgctctgggg cgatggatat
      721 ggtaatcgag tcgatcggtt cctggcgtgt atcgcatatc tcgatggcgt tcgtcccagt
      781 ctcgtgatgt ctcgcggtta ctacgcgcgt tcagtcatta ctgcgtggaa ttggcgagac
      841 gggaaattga gccaggtctg gagttttgat agcgactcat cagcggagaa ccgcaagttt
      901 cgcggacagg gaaatcataa tctcagtgta gcggatgtgg atggcgatgg tcgcgacgaa
      961 atcatctttg gcgccgcagt tattgacgat aacggcacag gactttactc gacaggttta
     1021 ggtcatgggg atgcgttgca cgtcactgat ttggatcctg atcacccagg ttttgaagtg
     1081 ttcgatattc aagaacgatt cgacgacgcg ggcgccagtt ttcgtgatgc gcgaacagga
     1141 gaaatcattt ggaagaaacc ttcgattcag gcaggtagtg atggtgaagg cccaggtaga
     1201 ggtctggcgc tggacatcga tccccgttat cgcggctacg agagttgggt gcgtggcgct
     1261 ggagtcgttg gtctctggaa tgcgaaaggc gaaaagatct cagataagac acccggctca
     1321 tgtaattttg gagtttactg ggatggcgat gtgctgagtg aattgcttga tcgaaacacg
     1381 atctcgaaat ggaaccccgt tgatgcgtcg gagacggttt tgttgcgcgc agatggatgc
     1441 acatcgaata
//
LOCUS       DATCGC010002230         1301 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_232889, whole genome shotgun sequence.
ACCESSION   DATCGC010002230 DATCGC010000000
VERSION     DATCGC010002230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1301)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1301)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1301
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232889"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..392
                     /locus_tag="VIJ87_21165"
     CDS             <1..392
                     /locus_tag="VIJ87_21165"
                     /inference="COORDINATES: protein motif:HMM:NF013380.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HEY5446924.1"
                     /translation="GVLIGRGAMANPWIFRQIEDAIHGRPVFEPTLADKRAILHEYFD
                     MLREDMPETPAINRMKQLAGQFTRGLQGGALFRTSIYHSHSVEEVLNRIEEYFEAIES
                     GRPYYGEAGAPIEEAPELDSCEAASVA"
     gene            complement(537..1187)
                     /locus_tag="VIJ87_21170"
     CDS             complement(537..1187)
                     /locus_tag="VIJ87_21170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446925.1"
                     /translation="MRTFKIPDIRHLKRLGVLASLSLTVLVTNAFSQSGRRNKPSVPT
                     PPTTTEDTNSTDPVGRQLSEKVQLLVGHQFSSRRMRSEEAIFQNFLKQLNEFKNVSAI
                     DIGDLNSDLARKRAKQETEATVLLLQFDIDSFQKGTYILNSSDMDVDVHTFAAVTGQQ
                     KFKGKVYYKAQAGPNVRRDNWPGGTPIKITAEAVGVEAAEQVHDWLLLEELRKKKP"
BASE COUNT          290 a          323 c          334 g          354 t
ORIGIN      
        1 acggagtttt gatcggtcgt ggcgcgatgg ctaacccgtg gatttttcgc cagattgaag
       61 atgcgattca cggtcgcccg gtatttgaac cgacgcttgc tgacaagcgt gcaattcttc
      121 atgagtactt cgacatgctc cgcgaagaca tgcccgaaac tccggcaatc aatcgcatga
      181 aacaactcgc cggacaattc acgcgcggat tacaaggtgg cgcactgttt cgcacatcga
      241 tctatcactc gcactctgtc gaagaggttc tcaatcgaat cgaagagtac ttcgaagcaa
      301 ttgaatcagg tcgtccttac tacggcgaag ccggagctcc catcgaggaa gcaccggagt
      361 tggattcatg cgaagccgcg agtgtggcgt gaagctgccc ttttgacagg atttcaggat
      421 tacaagattt caagcgaaag gcgaaaaggt tgaagcactt cctctaaggg gtgtttcatt
      481 cccgttccct attcagtctt gaaatcttgt aatcctgaaa tcctgtcaaa aggtttctaa
      541 ggttttttct tccgcaactc ttcaagcagt agccagtcat ggacttgttc tgctgcttcg
      601 acgcccacag cttcagcggt gatttttatc ggagtgccgc caggccagtt gtctcttcta
      661 acattgggtc ctgcctgggc tttgtagtaa accttgcctt taaacttctg ctggcccgtt
      721 accgctgcaa aagtatgaac gtctacgtcc atgtcggaag agttgagaat gtatgtgcct
      781 ttttgaaagc tatcgatatc aaactggagt agcagaacgg ttgcttcggt ttcctgcttt
      841 gcgcgctttc gagcgaggtc gctattgagg tcaccaatgt ctatggcgct gacgttctta
      901 aactcattca gttgtttcag gaagttttga aagatggcct cttcgcttct cattcgccgg
      961 gaactgaatt gatgtccaac aagcaactgc actttttctg agagttgccg gccaaccgga
     1021 tcggtagaat ttgtgtcttc agtggtcgtc ggcggagtgg gaaccgaggg cttgtttcgc
     1081 cgcccggatt gagaaaatgc gttggtaacc aacacggtca ggcttaatga cgcgagcacg
     1141 ccaaggcgct taaggtgtcg aatgtcgggg attttgaacg ttctcaagcc ctactctccc
     1201 gcggaatgtc tccttagaag cttccggcag tcgcggggtt gctggcaact atccgccagg
     1261 tcgctccaat ctttctaaac ggatatccat cttttgcgct a
//
LOCUS       DATCGC010002231         1263 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_232915, whole genome shotgun sequence.
ACCESSION   DATCGC010002231 DATCGC010000000
VERSION     DATCGC010002231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1263)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1263
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232915"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..505
                     /locus_tag="VIJ87_21175"
     CDS             <1..505
                     /locus_tag="VIJ87_21175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446926.1"
                     /translation="RFGLVRNHYVGRTFIEPRQSIRSFGVRIKLNPVRDLINGRRVVL
                     IDDSIVRGTTSKKIVRMVRDAGAKEIHVRISCPPTISPCYYGVDTPNKSELIAANMTV
                     EEIRDFIGADSLGYLSLEGMIEATGLEASESCVACWNAKYPTRITREAETMWERERDH
                     EEVVAEG"
     gene            612..1148
                     /locus_tag="VIJ87_21180"
     CDS             612..1148
                     /locus_tag="VIJ87_21180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446927.1"
                     /translation="MRQIVLAALLVTSIAGATVYGQQVQPKPRSLPVEVFQVLGLPLN
                     IHEAVLEEKASGYVVRCRMANESTSEIRGLRYSLTAIDPGNGSIPIASRIEGFNLQAQ
                     GTTTITFVTPIKFKMKEGNRLVLMLEQVLGVEAIWEVIKPRDALEAYLKGDYSIQPQI
                     MRVANYVDAPPQTQVIHK"
BASE COUNT          308 a          280 c          359 g          316 t
ORIGIN      
        1 tcgttttgga ctagttcgga atcactatgt tggccgcacc ttcatcgagc ctcgtcaatc
       61 gattcgttca ttcggtgtgc gaataaagct caatccagtt cgagatctga tcaatgggcg
      121 acgagttgtt ctgattgacg attcaatcgt ccgagggaca acttccaaaa agatcgtccg
      181 aatggttaga gatgcaggcg cgaaggagat tcatgttcgg atcagttgcc cgcccacgat
      241 cagcccttgt tattacggcg ttgatacccc aaacaaatcg gagttgatcg cggcgaatat
      301 gaccgttgaa gagattcgag attttatcgg cgctgactct ttaggttatt tgtcgcttga
      361 gggaatgatt gaagcgacgg gattggaagc gagtgagtcg tgtgtcgctt gttggaatgc
      421 aaagtacccg actcgaatca cgcgtgaagc cgaaacaatg tgggagcggg agcgtgacca
      481 cgaagaggta gtggcggagg gttgaatttt ggagtgcggt ggcctgccac cgctttggca
      541 aagaatattt cctgggcgaa gtcctgtttt accaagcggt gccgaaccac cgcgctccaa
      601 ggagaggttc tatgcgacag attgtgttgg cagcgttact cgtgacttca atcgccggcg
      661 caactgttta cggacaacaa gttcagccga agccgcgcag tcttcccgta gaagtatttc
      721 aagttttagg cttgcctctg aatattcatg aggctgttct tgaggagaag gcttcgggtt
      781 atgtcgttcg ttgtcggatg gccaatgaaa gcacttccga aatacgtgga ctgcgttatt
      841 cactgacagc gattgatccc ggtaatggat ccattccgat tgcgagtcga atagagggct
      901 ttaatcttca agcacaagga acgacaacaa tcacgtttgt gaccccgatt aagttcaaga
      961 tgaaagaagg caaccggctg gtcctaatgt tggaacaggt cctgggcgtc gaagcgattt
     1021 gggaagtgat caagccgagg gacgcactcg aagcctacct gaaaggcgat tactcaatcc
     1081 agccgcaaat aatgcgcgtc gcgaattatg tggacgcgcc tccacaaact caagtaattc
     1141 acaaataaaa acgtacgagg tcactgtttg ggaagagcta ctcgaggatg tggttgtgca
     1201 gttgcggtac tcgtggtgtt gcttggggca gcaggctttg ttggttatcg ctacgtcctg
     1261 ccc
//
LOCUS       DATCGC010002232         1097 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_132750, whole genome shotgun sequence.
ACCESSION   DATCGC010002232 DATCGC010000000
VERSION     DATCGC010002232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1097
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132750"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(181..465)
                     /locus_tag="VIJ87_21185"
     CDS             complement(181..465)
                     /locus_tag="VIJ87_21185"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HEY5446928.1"
                     /translation="MAQKSLLPNRGKRADRHAQAMHITRRQQEVLTFIAEGLNNREIA
                     DQLNISSRTVEVHRFNLMRRLQVTNVAQLIRQGLMLGLLSKLFRTTTPRV"
     gene            complement(683..>1097)
                     /locus_tag="VIJ87_21190"
     CDS             complement(683..>1097)
                     /locus_tag="VIJ87_21190"
                     /inference="COORDINATES: protein motif:HMM:NF016557.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HEY5446929.1"
                     /translation="IKRAHTLDLIVLAVEWGSGRREGWLSNLHLGARDPVNGSFVMLG
                     KTFKGMTDEMLIWQTEKFKALQLSTDGYTVSVRPEVVVEIAFNDIQASPHYPGGLALR
                     FARVKRYRPDKTAAQADTIETVRALYTRQAEATHS"
BASE COUNT          237 a          283 c          320 g          257 t
ORIGIN      
        1 gacgacgttg ccggtgaagt agccggttgc attactctcg gggtctacac gtcgatggga
       61 gcagggcggg ttgcctttgg acttccagga ctggcgtaac actttgacac gatcaacgtc
      121 cacctcgtca cctcctcaga gtacagatga gcaacgagcg tctggagaag agccttccgc
      181 ctagaccctc ggagtcgtgg tgcggaacaa tttggataac aatccgagca tgaggccttg
      241 gcgaatcagt tgagccacat tcgttacctg caaccgacgc atgagattga atcggtggac
      301 ctcgacggtg cgtgaactga tattcagttg atcggcgatc tcgcgattat tgagtccttc
      361 ggcgatgaag gtcagcacct cttgctgtct gcgggtaatg tgcatcgctt gcgcgtggcg
      421 atctgcgcgc ttgcccctgt ttggaagcag actcttctgg gccatgaggg atacctcctc
      481 caatggtgta acgggatcga aggtcttagt cagaactatc cacaggaacg agtctagtgg
      541 aaaccaagta tcaacgtaat cagacagatg attacggata tgcactagag cttaacgagg
      601 acctgttgaa tagagccgat aaggagtgcg aatgccgagc cggaacttga gacaactggg
      661 cttgtggttg gcgtgtgggc gcttagctgt gtgtcgcttc cgcttggcgt gtgtagagtg
      721 cgcgcactgt ctcgatggtg tccgcctgcg cggccgtttt gtcgggacgg tatcgtttca
      781 cgcgtgcgaa tcgcagagcg agtccacccg gatagtgagg actggcttga atatcattga
      841 atgcaatttc gacgacgact tccggccgca cagagaccgt gtagccgtcc gtcgaaagtt
      901 gaagggcttt gaacttctcg gtctgccaga tcaacatttc atccgtcatg cctttaaagg
      961 ttttgcccaa catgacgaag ctgccgttga cggggtcgcg cgcccccaaa tgcagattac
     1021 tgagccatcc ctcgcgccga ccgcttcccc attcgacggc caggacaatc aggtccaaag
     1081 tatgggcccg tttaatt
//
LOCUS       DATCGC010002233         1775 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_132813, whole genome shotgun sequence.
ACCESSION   DATCGC010002233 DATCGC010000000
VERSION     DATCGC010002233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1775)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1775)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1775
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132813"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..381)
                     /locus_tag="VIJ87_21195"
     CDS             complement(<1..381)
                     /locus_tag="VIJ87_21195"
                     /inference="COORDINATES: protein motif:HMM:NF012879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEY5446930.1"
                     /translation="MAETFQLPSTPLEQFTLANGLRVVLSQDRSVPVVSVAVYYDVGS
                     RNEKEGRTGFAHLFEHMMFQGSENVPKAAHFQYIFNAGGTMNGTTSTERTNYFETLPS
                     NYLPLAFWLESDRMRSLKVTQENLD"
     gene            complement(567..1004)
                     /locus_tag="VIJ87_21200"
     CDS             complement(567..1004)
                     /locus_tag="VIJ87_21200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446931.1"
                     /translation="MSSPYHKEEPPKPDAVDDLMLRDDEGGSGEEHSRTASSVRDIAS
                     RIPESLSAIGRDISRTIEKAISAKDDYVVAVKISPEAQDKLEQLVQAGVFRSRAEAAG
                     FLIDEGIATQAALFDRVRQKLAEIERLRAELRGLITDKPASGI"
     gene            1437..>1775
                     /locus_tag="VIJ87_21205"
     CDS             1437..>1775
                     /locus_tag="VIJ87_21205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446932.1"
                     /translation="MKRILSYLSLVLLIVTLVVPGFVLAQQRTQVPGSNNPPSGRKPR
                     ATNSTATAGVERDFDEALKVIQEQYVDGRKLDYNSVFKSSIIGMLRSLDPHSNYYDRE
                     EFDELKTDQRS"
BASE COUNT          449 a          420 c          430 g          476 t
ORIGIN      
        1 atcgagattt tcctgagtga ctttgagtga acgcattcga tcgctctcaa gccagaaagc
       61 cagcggcagg taattggatg gcagcgtttc gaagtagttg gtgcgttcgg tcgatgtcgt
      121 gccgttcatg gttccaccag cattaaagat gtattgaaag tgcgcggcct tcggcacgtt
      181 ttcggaacct tgaaacatca tgtgttcaaa caagtgtgca aaaccagtcc gaccttcttt
      241 ttcgtttcgc gaaccgacat catagtaaac agccactgag acgaccggaa cggaacggtc
      301 ctggctgagg acgacacgca agccattcgc tagcgtgaat tgttcgagcg gggttgatgg
      361 aagttgaaat gtctctgcca cgataccttt ccttcgttca aataaacgcg tgctttaccc
      421 tccgaaagaa ctggaaggta aagcacacgg gaaggggaaa aaattgggac ttgctatttg
      481 cgctttgcgc ttaccgtttt tgtactttgt ttttgcgtca tgctcagcga gccgacctcg
      541 aagatcgaag cacaaagtga atacatttaa atgccgctcg cgggcttatc cgtgatcaac
      601 ccacggagtt ctgctcgaag cctttcgatt tcggcgagct tttgtcgaac acgatcaaac
      661 aaagcagctt gagttgcgat tccttcgtcg atcaggaatc cagccgcttc ggccctgctt
      721 ctaaatacac cggcctggac caattgctcc aacttgtctt gagcttcagg agaaatcttc
      781 actgccacta cataatcgtc ttttgcagaa attgctttct caatggtccg gctgatatca
      841 cgtccgattg cgctgagcga ttcgggaatg cgtgacgcga tgtcgcgaac cgacgatgcg
      901 gttcggctgt gttcctcacc ggagccgcct tcgtcatcac gtaacatcaa atcgtcgacg
      961 gcgtcgggct ttggtggttc ttccttatga taaggactac tcatttcgta aagactcctt
     1021 ttgcgaccaa cgaaacatac taacagaacg tcttacgatt aattgttggg gtaggttcat
     1081 tctacggagg cgtggaaaga aaggtcaagc cattgcagat tgaagatttc actttgaaga
     1141 ttagtcgata attttaagat tgccgttggc taaaaaggtg tcttgtagcg ttaaagctct
     1201 tgagctcggg gcatcagcta aggttcacac atcaccgaat atttcaggct cgcaggccgg
     1261 agcaaaatta gaacgtggtc aaggtcactc cgagcaacct gaaatctgca atcttcaatc
     1321 taaaatccct cttctagtca accttgccca ccctttaagg catccgttat attgcaagtt
     1381 atgacgtcaa atcgggcgtt gttagaaact ctggcaggga aatctcgagg ttttttgtga
     1441 aaagaattct gtcttattta tcgcttgtcc ttttaattgt cactctggtt gttccaggtt
     1501 ttgtgcttgc ccaacagcga acacaggttc cggggagcaa taatcctcct tccggtcgta
     1561 aaccaagagc aacgaacagc accgcgacgg ctggtgtaga acgggatttc gatgaagcat
     1621 tgaaggttat ccaggagcag tatgttgatg gccgaaaact cgactacaac agcgtcttca
     1681 agtcgtcgat cataggaatg ttgcggtcac ttgatccaca ttcaaactac tacgaccgtg
     1741 aagagtttga tgaacttaaa accgatcaac gttcg
//
LOCUS       DATCGC010002234         1048 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_99529, whole genome shotgun sequence.
ACCESSION   DATCGC010002234 DATCGC010000000
VERSION     DATCGC010002234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1048)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1048)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1048
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99529"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..792
                     /locus_tag="VIJ87_21210"
     CDS             <1..792
                     /locus_tag="VIJ87_21210"
                     /inference="COORDINATES: protein motif:HMM:NF017085.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAD domain-containing protein"
                     /protein_id="HEY5446933.1"
                     /translation="HSMRVASRRLRSALRDFMPYIQKRGLGSTLKQIRSIADALGEVR
                     DQDVAIMALHNLASKATSEIANALQDLLESRKEIRRQARNQLESKLADGQIKLLSDDF
                     SKAVAKATQSSDKQSVVSYRRMAREVIRDRLKDFEKLSDSLYTPFESEPLHEMRIAGK
                     RLRYAIELFAEGWDPKILNFAKRAARLQSTLGEVHDCDIWIESFGTQIVKAKKAKHKE
                     GVDAFTWILCHFIGTRTRNLQKSFTLWKLWDSNDTSNELRDLIKS"
     gene            809..>1048
                     /locus_tag="VIJ87_21215"
     CDS             809..>1048
                     /locus_tag="VIJ87_21215"
                     /inference="COORDINATES: protein motif:HMM:NF024489.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446934.1"
                     /translation="MTTTPVKVKQKSIGKSPSKPGKMRNLRQQKHLLINRELSWVEFN
                     RRVLEEALDARHPVLERLKFLAIFSSNLDEFFMVRV"
BASE COUNT          303 a          248 c          262 g          235 t
ORIGIN      
        1 cattcgatgc gggtcgcctc taggcgtctc cgaagtgctt tgcgcgactt catgccctac
       61 atccaaaagc gcggcctggg ttccacactc aaacaaataa ggagcattgc tgatgcactc
      121 ggcgaagtac gtgatcaaga cgtggcaatc atggcgttac acaacctggc atcaaaagcg
      181 acttcggaaa tcgcgaacgc cctacaagat cttctcgaat cgaggaaaga aattcgtcgg
      241 caggcgcgta accaattaga aagcaaactg gccgacggtc aaatcaaact cctatcggat
      301 gatttttcta aagcggtggc aaaagcgact cagtcttcag ataagcagtc agttgtgtct
      361 tatcgcagaa tggcgcgaga ggtgatacgc gatcgactga aggacttcga gaaacttagt
      421 gacagtttgt acacgccctt tgaatctgag ccactgcacg aaatgcgtat tgccggcaag
      481 aggcttcgtt atgcaatcga actgtttgcg gagggttggg atccaaaaat actaaacttc
      541 gccaagcgcg ccgcacgact acagtctact ttgggagagg tacacgactg cgatatctgg
      601 atagaaagct ttggaactca gatcgtcaaa gccaaaaaag cgaagcacaa agaaggggtc
      661 gacgctttca cctggatact gtgtcacttc ataggcacca ggactcgtaa cctgcaaaag
      721 tccttcacac tctggaaact ttgggattca aacgatacaa gcaatgaact gagagatttg
      781 attaaatcct gaagtgccca attcgaccat gacaaccaca cccgtaaagg tcaaacagaa
      841 gtcgatcgga aaatcaccat caaagcccgg caaaatgcgg aatctccggc agcaaaaaca
      901 tcttctgata aatcgggagc tgagttgggt cgagtttaat cgtcgcgtat tggaagaggc
      961 gttggacgca agacatccag tgctcgagcg gttgaagttt ctggctatct tctcttcgaa
     1021 tctcgatgag ttttttatgg tgcgtgtg
//
LOCUS       DATCGC010002235         1311 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_429282, whole genome shotgun sequence.
ACCESSION   DATCGC010002235 DATCGC010000000
VERSION     DATCGC010002235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1311)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1311)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1311
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_429282"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(327..>1311)
                     /locus_tag="VIJ87_21220"
     CDS             complement(327..>1311)
                     /locus_tag="VIJ87_21220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446935.1"
                     /translation="ETLNDDERYYWPATLTANTSYTFRIDVIDSTVTLKIFEIEPNGA
                     IDVSSPVFDSTGVRNDFLFKRRRGRVGWQIDLHDTDAYVDSVRSRGMMYGEVMTNSFE
                     SFTPVVGARIYSGSTPDQTIIPNTSAAFGSEIFADTRVTRSADGSVRVAATPGQGLWT
                     DFHTFEDFNNTEIFFDLYTATGGANNFLPGLLNERGMLIPLVMTRGVDNRWQTFRVYA
                     SGASNQMSGKYRFVLMQMNGDFTWWVDNLYFMERSVAYSGRSEALDPWGRGGNNWIDF
                     RSLVNNDNGVLFGTRGNFIQIRAQALKQGINIDKIYVKPQYAQLGRFVWNP"
BASE COUNT          357 a          310 c          308 g          336 t
ORIGIN      
        1 accgccatat gtatatgtgt aattgactgg attacctacg ccttgagagc catctccgaa
       61 atcccataac cattcgaccg gagtgaatgg atcataaacc gtaagagaac cggtcataac
      121 caggggttgg cccgcatcat ggtagtacat tgtgggggcg ttatcatatg tataactacc
      181 ataatttgtg ctaacggaga ctacctctgc attagggcta ataacaatat taacagatgg
      241 caagaggtat ttgagaggga tcgaattgat cgactctact gcctctgatg tagtatattt
      301 acgaataggt ggcacgacga ctgatattat gggttccaaa caaaacgacc aagctgcgca
      361 tactgcggct tgacgtagat tttgtcgatg tttattcctt gcttgagcgc ttgcgccctg
      421 atctgaatga agtttccacg ggttccaaag agaactccgt tgtcgttatt tacgaggctg
      481 cggaaatcaa tccagttatt accgccacga ccccaaggat ctagcgcttc tgatctaccc
      541 gagtaggcta cgcttcgttc catgaagtaa agattatcta cccaccatgt aaagtcgcca
      601 ttcatctgca tcaggacaaa tctatacttg cctgacattt gattagatgc gccagaagcg
      661 tacacgcgga aagtctgcca acggttatct accccgcgag tcatgactag agggatgagc
      721 attccccgtt cattcaacaa ccctggtagg aagttattag ccccacccgt agctgtatag
      781 aggtcgaaga aaatttctgt attgttgaaa tcttcaaatg tatggaagtc tgtccataag
      841 ccttggccgg gagtagctgc cacgcggact gaaccgtctg ctgaacgggt cactcgggta
      901 tccgcgaaaa tttctgagcc gaatgccgca gaggtgtttg gaatgattgt ttgatctggt
      961 gtactgccgc tgtaaatgcg cgcacccaca acaggagtga aggattcaaa actgtttgtc
     1021 atcacttcgc cgtacatcat tccacgactg cgcacagaat caacgtaagc gtcagtgtca
     1081 tgaaggtcaa tctgccagcc gacacgccct cgtctacgct tgaatagaaa gtcattgcgg
     1141 acgccggtac tgtcaaacac aggagaacta acgtcaatcg ccccgttagg ctcaatctca
     1201 aaaatcttca aagtgactgt cgagtcaata acgtcgatac ggaaagtgta agatgtattg
     1261 gctgtcaaag tggcaggcca gtaataacgt tcatcatcgt tcagtgtctc t
//
LOCUS       DATCGC010002236         2466 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_264514, whole genome shotgun sequence.
ACCESSION   DATCGC010002236 DATCGC010000000
VERSION     DATCGC010002236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2466)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2466)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2466
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_264514"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..321
                     /locus_tag="VIJ87_21225"
     CDS             <1..321
                     /locus_tag="VIJ87_21225"
                     /inference="COORDINATES: protein motif:HMM:NF012575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HEY5446936.1"
                     /translation="DTKWQQQYRIWVTKTSDRLFVIYARCTHLGCTPDWKASENKFKC
                     PCHGSGYDSEGINFEGPAPRPMDRAKVELDAEGQILVDTGKLFSWPKGEPSHFDDNGA
                     FIPM"
     gene            391..1320
                     /locus_tag="VIJ87_21230"
     CDS             391..1320
                     /locus_tag="VIJ87_21230"
                     /inference="COORDINATES: protein motif:HMM:NF012263.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b N-terminal domain-containing
                     protein"
                     /protein_id="HEY5446937.1"
                     /translation="MASENPDPKETKQLTTGDDSGKNLMEKVREGTSALKDRAIEEAK
                     TYQDPQDTQVWKSIFRVSHDRSDPRNRSLAILSNVFLHLHPAKINRDAVRYPFTWGMG
                     GITFYLFIVLTFTGVLLMFYYHPTKVDAFRDILYLEHDVPFGKLLRNMHRWAAHLMVI
                     TTWLHMFRVVLTGSYKRPREFNWCVGVVLLVLTLLLSFTGYLLPDDQLGFWAVTVGTN
                     MARATPMLGHEGPFGPLLGMTAYNDVRFGLLGGSIVDSNALLRSYIWHCIGIPLVASI
                     FMAVHFWRIRKDGGISGPAAVMLESEIKAVKKK"
     gene            1428..>2466
                     /locus_tag="VIJ87_21235"
     CDS             1428..>2466
                     /locus_tag="VIJ87_21235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446938.1"
                     /translation="MRKLINKWTILILVLVFVVIAAIKVQDWHQLWIISSAPDNIPIV
                     AMLFLVPFFTWLGIKQALANDRLVDQLESDKALAKTHHRKAEPWRPGWAKEIHVWPYL
                     VRVEFLATVIVTVVLFIWSITLNAPLEEPANPNLTMNPSKAPWYFLGLQEMLVYFDPW
                     IAGVVMPSIIMVGLMVFPYVDSNPLGNGYYTLKQRRFSLLMFGWGFLMWILLIVIGTF
                     IRGPGWIWFWPGQTWDHNTVVFDKNVDLHDMIALSGIGKLLHLGVVLQSSVGKFLFGA
                     LVVGGFYLVGALFFHWLMQVDFKKITFRPLNLFPKDALEQKLLARTSLLQYVTFQFFA
                     VSVLLALPVKLI"
BASE COUNT          547 a          575 c          664 g          680 t
ORIGIN      
        1 gacacgaagt ggcagcaaca gtatcgcatc tgggtgacaa agacttcgga tcgtctgttt
       61 gtgatttatg ctcgctgtac ccacctgggt tgtacaccgg attggaaggc aagcgagaac
      121 aagtttaaat gcccatgtca cggcagtggt tacgatagtg agggtattaa cttcgaagga
      181 cctgcgcctc ggccaatgga tcgtgccaag gtagagcttg atgccgaggg acagatctta
      241 gtcgatacag gcaagctgtt ttcgtggcct aaaggtgagc caagccactt cgatgataat
      301 ggcgctttca ttcccatgta gggttgcact tattctgtgc ggttttgatt tagggtttgc
      361 gtcaaagagt ggaataacaa aacgaggtct atggcttcag aaaaccctga tccaaaagaa
      421 acgaaacaac tgaccaccgg tgatgattcc ggaaagaacc tgatggaaaa ggttcgcgaa
      481 ggcacttccg cgttaaagga ccgtgccatc gaggaagcca aaacttatca ggatcctcag
      541 gacacccagg tctggaagtc gatctttcgc gtctctcacg atcgttcgga tccgcgcaat
      601 cgttcgctgg caattctttc caacgtcttt ctccatttac accctgcaaa aatcaatcgc
      661 gacgctgtgc gctacccgtt tacgtgggga atgggcggga tcactttcta cctcttcata
      721 gtgcttacgt tcacgggtgt gcttctgatg ttctactacc acccgacgaa ggtggacgcg
      781 ttccgcgaca ttctctatct cgagcacgat gttccgttcg gcaagttgct acggaatatg
      841 catcgctggg ctgcccactt gatggttatt acaacgtggc tgcacatgtt tcgcgttgtg
      901 ttgaccggtt cctacaagcg accgcgcgag tttaattggt gtgtgggtgt agtgctcctg
      961 gtgttgacgc ttctgttgtc gttcactggt tatttgttac ccgacgatca gctcggattc
     1021 tgggcggtca ctgtcggaac gaacatggcg cgagcgactc cgatgctggg acacgaaggt
     1081 ccgtttggtc cgctgttggg aatgacggct tataacgacg ttcggtttgg actcctgggt
     1141 ggatcgatcg tggattcgaa cgcactgttg cgttcttata tatggcattg cattggtatt
     1201 ccgttggtcg cttcaatttt catggcggtt cacttctggc gaattcgaaa agatggcggc
     1261 atatctggtc ccgcggctgt gatgctggag tcggaaatca aagccgttaa gaagaagtga
     1321 ggttgttagg tgcagaagcc cgactgtgaa ggagggcaag tctcgacagc agcaggtttc
     1381 tacctagcag tcggaattct gcatcgaggc gcattcacta aacaataatg cgaaaactca
     1441 ttaacaagtg gacgatactg atcctggtgc ttgtgtttgt ggtgattgcc gcaatcaagg
     1501 ttcaagactg gcatcagctt tggatcatct catcggctcc cgataatatc ccaattgtcg
     1561 cgatgctctt tctggtcccg ttctttacct ggttgggaat caagcaagcg ctcgcaaatg
     1621 accgtttggt agatcaactg gagtcagaca aggcattagc aaaaactcat catcgtaaag
     1681 ctgaaccatg gcgtccgggt tgggccaagg agattcacgt ctggccatat ttagtgcgag
     1741 tcgagtttct cgccaccgtg atcgttacgg tggttctttt tatatggtca ataacgctga
     1801 acgctccgct cgaagaacct gctaatccaa acctaacaat gaacccgtcg aaggctccgt
     1861 ggtatttcct gggtctccag gaaatgctcg tttacttcga tccatggatc gcaggcgtcg
     1921 ttatgccttc gatcatcatg gttgggctaa tggtgtttcc gtacgttgat tcaaacccac
     1981 tcggaaacgg ctattacaca ttgaagcagc gccgcttttc tctgctgatg tttggctggg
     2041 gcttcttaat gtggatcctc ttgatcgtca ttggaacatt tatccgtggg ccaggctgga
     2101 tttggttctg gccaggacag acgtgggacc acaacacggt cgtgtttgat aagaacgttg
     2161 acttgcacga catgattgcc ctgagtggca tcggcaagct tctacacctg ggagtcgttc
     2221 ttcaaagcag tgttggcaag ttcctgtttg gggcgctagt ggttgggggc ttctacctgg
     2281 tgggtgcgct ctttttccat tggctcatgc aagtggactt taagaagatt actttcagac
     2341 cacttaatct tttcccgaaa gatgcgctcg aacagaagtt gttagctcga acgagtctct
     2401 tgcaatacgt gactttccag ttttttgcag tgagcgttct actggcgctt ccggtgaagt
     2461 tgattt
//
LOCUS       DATCGC010002237         1314 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_429307, whole genome shotgun sequence.
ACCESSION   DATCGC010002237 DATCGC010000000
VERSION     DATCGC010002237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1314)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1314)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1314
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_429307"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1011)
                     /gene="moeB"
                     /locus_tag="VIJ87_21240"
     CDS             complement(<1..1011)
                     /gene="moeB"
                     /locus_tag="VIJ87_21240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_257790188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-synthase adenylyltransferase MoeB"
                     /protein_id="HEY5446939.1"
                     /translation="MSITIAIPAPLRQFAGGQSQIEVEAKTAGEALDLLTSTHAALRR
                     HLYNDQNALRNFVNVYLNDEDIRHASGPNTPVKDGDTLMIVPSIAGGAVVEEEVGQTL
                     PELSNEEILRYSRHLIMPEVGMQGQRKLKAASVLMIGTGGLGAPLGMYLAAAGVGRIG
                     IVDFDVVEESNLQRQIIHGSRDLGRRKVESARDRMRDINPHIEIETHETRLTSQNAMG
                     LFRNYDIIVDGTDNFPTRYLVNDACVLSGKPNVYGSIFRFEGQSSVFWAQRGACYRCL
                     YPEPPPPGLVPSCAEGGVLGVLPGIVGAIQANETIKIILGAEDILVNRLLLFDAWAMK
                     FRE"
BASE COUNT          312 a          355 c          324 g          323 t
ORIGIN      
        1 ttcacgaaac ttcatggccc aggcgtcaaa cagcaacaga cgattcacta aaatgtcttc
       61 agcaccaaga atgatcttga ttgtctcgtt tgcctgtatc gcaccgacga tcccaggcag
      121 cacgcctagc accccgcctt ctgcgcagga tggaaccagg ccaggcggtg gcggttcagg
      181 atagagacag cgataacaag ctccgcgttg tgcccaaaac acactgctct gaccctcgaa
      241 ccgaaagatt gagccataca cgttcggctt gccgctcaac acacaagcgt cgttgacgag
      301 atagcgcgtc gggaagttat ctgttccatc gacgatgatg tcgtagttac gaaacagccc
      361 catcgcgttc tgactcgtga gtcgcgtttc atgcgtttcg atctcgatgt gcggattgat
      421 gtcgcgcata cgatcgcggg ctgactcaac cttgcgacgt cccaggtctc tcgaaccgtg
      481 aataatctgt cgttgtaagt tcgactcttc gacgacgtca aaatcgacaa ttccaatgcg
      541 cccgacaccg gccgccgcaa gatacattcc cagtggagca cccaggccgc ccgttccgat
      601 catcaacacg ctggcagctt tcagtttccg ctgaccttgc atgcctactt ccggcatgat
      661 caggtggcgg ctatagcgca ggatctcttc gttggacaat tcgggaaggg tctgtccaac
      721 ctcttcttca acgaccgcgc cacctgcaat tgaaggaacg atcatcagcg tgtcgccatc
      781 tttgactggc gtattaggac ccgatgcgtg gcgaatgtct tcgtcgttga ggtagacatt
      841 aacgaagttg cggagcgcgt tctgatcgtt atacaggtga cgacgtagag cggcgtgagt
      901 tgacgtaagt agatcgagcg cctcgccagc cgtctttgcc tctacttcaa tctgcgactg
      961 tcctccggcg aactggcgca acggagcagg aatggcaatt gttatcgaca tgaatggttc
     1021 ctttcgaatg tccgatgttc gatatgcttt agcttgtcga gattttggtg ctttgaactt
     1081 tgtagatggt tcttgctttt aacgtctcca gaacgaaaac taagctcaag gcacaaagtt
     1141 ccaaatacaa agtactaagt tcaacgctac gacaagctaa agcttatcgg acatcacctt
     1201 tatttcttca ctatcaaact tagaacggtc tggttgttgt tcccacgaaa ataaatcggc
     1261 ggccttttgc ctcatcacgg aaacaatgat gtaggaatac gtcggccatg cgtg
//
LOCUS       DATCGC010002238         1783 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_99561, whole genome shotgun sequence.
ACCESSION   DATCGC010002238 DATCGC010000000
VERSION     DATCGC010002238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1783)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1783)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1783
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99561"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..197)
                     /locus_tag="VIJ87_21245"
     CDS             complement(<1..197)
                     /locus_tag="VIJ87_21245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446940.1"
                     /translation="MGRTKLNNKDAWQQDNQTCESIFELSAQSQRPLLFLAAEDPAEK
                     DIFIVSRTHQLPDSLFDTRTKV"
     gene            234..1505
                     /locus_tag="VIJ87_21250"
     CDS             234..1505
                     /locus_tag="VIJ87_21250"
                     /inference="COORDINATES: protein motif:HMM:NF018877.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AGE family epimerase/isomerase"
                     /protein_id="HEY5446941.1"
                     /translation="MTNKDIYSTLASEMETTLQRDVLGVWFPRAVDKESGGFYSNFTR
                     DWKPASSEGKFSVFQGRMVWVAAQVLMRRLEMKDEYQPIVEHGLKYLTNVLWDQQYGG
                     FYWGLNEKNQISAPYTDGKHLYGISFGLYGATAAYQATRDESALLLAQKTFRWIDEHA
                     HDSQGRGYFEWLTREGKVVQRKSDSERSEGIPVAGFPIGYKSMNTHIHLLESFTQLYE
                     VWRDEVLRARLLELLEIIRDKVCTDPGVMNLYFTPDWRAIPDHDSYGHDVETAFLMLE
                     AEAVVGKKPDPKTERMAKLLVDHALAYGWDETHGGFYRDGTAFGIAEDKRKEWWVQFE
                     GLNALLLMHQKYGQSTDRYFKAFQQQWSFIKDHQVDKEFGGVFDTVESDGSVKDYTKS
                     RIWKECYHESRALLNTIERLQQLTSETGKTP"
BASE COUNT          463 a          413 c          476 g          431 t
ORIGIN      
        1 accttcgtgc gagtatcaaa aagtgaatcc ggcaattgat gagttcttga gacaatgaag
       61 atgtctttct ctgcgggatc ttctgccgca agaaaaagga gaggtcgctg agattgtgca
      121 gagagttcaa atatcgattc gcaggtctga ttgtcttgct gccatgcatc cttgttgttc
      181 agttttgtcc gacccatgct caaatcaacc cagtcaagcc gacaaccgca cgaatgacta
      241 acaaagatat ctattcgacg ctggcctccg agatggagac aacgctgcaa cgcgacgtgc
      301 ttggtgtgtg gtttcctcgt gcagtcgata aagagtcagg tggcttttat tcaaacttca
      361 ctcgagactg gaagccagcg agcagcgaag gaaaattctc agtctttcag ggccggatgg
      421 tttgggtagc agcacaggtg ttgatgcgcc gccttgaaat gaaggatgag taccagccaa
      481 tcgttgagca tggattgaag tatttaacta atgtgctctg ggaccagcag tacggaggat
      541 tttattgggg actgaacgag aagaaccaaa tctcagctcc atacaccgat ggtaaacatc
      601 tgtacgggat cagttttgga ctctacggcg caacagccgc gtaccaggcg acgcgagatg
      661 agagtgctct gttgctggcg caaaagacct ttcgttggat tgacgaacac gctcacgaca
      721 gccagggccg tggttatttt gaatggctga cgcgcgaggg gaaggtggtt cagcgtaagt
      781 ctgacagtga acgaagtgaa ggtattccag tcgccggctt tcctatcggc tacaagtcga
      841 tgaacacgca tatccacttg ttggagtcgt tcactcagct ttacgaagtc tggcgcgacg
      901 aagtccttcg agcgcgattg cttgagctgc tcgaaataat tcgcgacaaa gtttgcacag
      961 accctggggt gatgaatctg tacttcacac ctgactggcg agccattcct gatcacgact
     1021 cctatggtca cgatgtcgaa actgcgtttt tgatgttaga agcggaggct gtcgtcggca
     1081 aaaagccaga tccaaaaact gaacgcatgg caaagttatt ggtggatcac gcgctcgcct
     1141 atggttggga cgaaacacat ggtggtttct atcgtgatgg aacggctttt ggcatcgctg
     1201 aagacaagcg caaagagtgg tgggtacagt tcgaaggtct caacgcattg ttgctgatgc
     1261 atcagaagta tggtcaatca actgaccgtt acttcaaagc gtttcagcag cagtggtcgt
     1321 tcatcaaaga ccatcaagtt gataaggagt ttggcggagt gtttgatacg gttgagagcg
     1381 atggttcagt caaggattac actaagtcac gcatctggaa ggagtgttat cacgaaagcc
     1441 gagcgctcct taatacgatt gaacgcctgc aacagctaac gagcgaaacc gggaagaccc
     1501 catagagtct cttgcaaaag tcgcgcaatc tagtggcgat gaagtcagta ccgaaacgcg
     1561 gcagcgtcgg ctcggtctaa gccctacctc caacaatttc aaccagagcc gacgctaccg
     1621 cgtttcggta ctgacttcat cgccactaaa gttgacttaa gcaagaagct ccataattgt
     1681 tcagcctcga gtttttccta tagtcgttat cccaactgga ggtgcccatg aagtcagcac
     1741 gaacggaagc ccgaatatct tcacttcttg ccttaggact ttg
//
LOCUS       DATCGC010002239         4215 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_233057, whole genome shotgun sequence.
ACCESSION   DATCGC010002239 DATCGC010000000
VERSION     DATCGC010002239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4215)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4215)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4215
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_233057"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..396
                     /locus_tag="VIJ87_21255"
     CDS             <1..396
                     /locus_tag="VIJ87_21255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446942.1"
                     /translation="KVLATAFDNAVISQTDWELIYKGIIKETSGPSPEQQQAQQSADE
                     ASKQAGAQMHERAMAAQQPPQGAAGGGQGSGGPQIDDIASIVQEVARLIDGLPPELKQ
                     HLGVQLARGRSVADIASQLIQQMQQGAAA"
     gene            427..1479
                     /locus_tag="VIJ87_21260"
     CDS             427..1479
                     /locus_tag="VIJ87_21260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446943.1"
                     /translation="MPKEQEDLMDAVGNSFGIQDQQPAVPEGDSSGSDEGQQQQELPL
                     EQQQGESDGHRLPQSEGEGETGSDVHRGKSRGDGEQLFPEKPKKGPKGELLGKDGQVV
                     AATRREKQLAYNLNRAQYAANQASRQLRQMQTHFQQYKALDDVMKQNNLSPQMAQEAL
                     QLRAMAEKDPIMAVRDIVARVLSTGVTMEQLFGNDAVPSINARVITNELDRRLGPLER
                     QTQQQQRQAQIAETAQVQMEEFVASHPHAETHGVEISNLVAQHGLTPERAYFELRSWV
                     ERRGFDFTTPLRPQIEAAMKRQRGGNGRSRSTPGSMRGVSDVPTQSTTNSRADFRSNA
                     PWRDIAAAVFTELNNK"
     gene            1492..2442
                     /locus_tag="VIJ87_21265"
     CDS             1492..2442
                     /locus_tag="VIJ87_21265"
                     /inference="COORDINATES: protein motif:HMM:NF033394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HEY5446944.1"
                     /translation="MPVLQNVLATTIERSRKKLIVAAMQSNALMAWCFARDRIENESS
                     GYNITNPLLTGRNPTVGSYQYYDSLPVQQTQEFIKLEYRWSRIAGTVIISNQEEDENK
                     GEQAAVKLLQGKLEALELSIKEKFSGYLYGLGGGNDPNGLALLIPDDPTTGSLAGVDR
                     ALEVQWRPSSYDFAGTLNSTNIEEAYDDVLLDLKQGTERPKVIIAGRNHYRLYRAAVR
                     SKLTIPLTNTSSGKRMMDLGFDGVSHNGVPIIYDESCPVDRAYFLNDTYLRLHILGDN
                     NMKNVDLTAPWTIDGYGQRVITQCQFCTWKQYRTHAVVND"
     gene            2480..2920
                     /locus_tag="VIJ87_21270"
     CDS             2480..2920
                     /locus_tag="VIJ87_21270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446945.1"
                     /translation="MAETPSTVSFQEKRAAYSMDERKKPVPAYTIEPMKRKTVVNRTV
                     KDEIGFRIVPTDVEVEGYMVRTLRGDSVFLSHEDVVRLKLDRNLVPMLIEGGDDTPVG
                     MQQMNAALSDKQKTALDVLTRLVESDPSLVEKLLASKEPEQVEE"
     gene            2925..3581
                     /locus_tag="VIJ87_21275"
     CDS             2925..3581
                     /locus_tag="VIJ87_21275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446946.1"
                     /translation="MAVQVAIPGMRRINNRVEACCYAADVGVDGLTTVDIPAPVAALA
                     TGILNAQSIAAAGTSSPVVGFSPSVMGRYGRNVTVVASGAATSNVTVYGFDYLGQAMK
                     ESFTLTGATPVVGKKMFADIVNVAYGLTAGTTINVGYGAVLGVPYKVLGTQITNELTS
                     DVTPTAGALVAGVTTQTLTSGDPRGTYTPNLAPDGVRSYRFSCAVDRNNLHGSAHVIA
                     "
     gene            3661..>4215
                     /locus_tag="VIJ87_21280"
     CDS             3661..>4215
                     /locus_tag="VIJ87_21280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446947.1"
                     /translation="MITFGDIVTKVLQRLALVEGLDAQIYAEPRIQLAVQHKFDMIFR
                     EYWLPDYTTYQEPHTLDGVTGTITDALDDKLKDWRDLHSVFWEGSHKPLPIAPMNVRD
                     IDINYPSLRPLGNNKTKWFRVLPVNTIGKVYVTYRTKPNDFEEDSDEIFMDTQLLMLG
                     TCWDVLEDDGTNPGASDKFRILFQD"
BASE COUNT         1169 a         1020 c         1102 g          924 t
ORIGIN      
        1 aaggttctag caacagcatt cgataatgct gtcataagtc agacagattg ggagctaatc
       61 tacaaaggca tcatcaaaga gacaagtgga ccttcgccag agcagcaaca agcgcaacag
      121 agcgcagatg aagccagtaa acaagccggt gcacagatgc atgagcgtgc tatggctgca
      181 caacagccac cacaaggtgc tgctggtggt ggtcaaggca gtggtggacc acagattgac
      241 gacattgcat caatcgtaca ggaggtagct cgcctaatcg acggtctacc gcctgaactg
      301 aaacaacatc tcggcgtaca actcgctcgt ggccgtagtg ttgctgacat agcatcgcag
      361 ttgatacaac aaatgcagca aggtgctgcg gcttagtgca cagcgtgtgc agtataggag
      421 gctacaatgc ccaaagaaca agaagacctg atggatgcag ttggcaacag ctttggcatt
      481 caagatcaac aacccgctgt gcctgaaggt gacagcagtg gcagcgatga aggacaacaa
      541 cagcaagagt tgccgttaga gcaacaacag ggagagagtg atgggcatag acttccgcag
      601 tctgagggag agggagaaac aggatcagac gtacatagag gcaagtcaag aggtgatgga
      661 gaacagctat tccctgaaaa acccaagaaa gggcctaaag gagaacttct tggtaaagat
      721 gggcaagtgg ttgcagcgac taggcgagag aagcagcttg catacaacct caacagagca
      781 cagtacgcag ctaaccaagc atctcgtcaa ctcaggcaga tgcaaaccca cttccagcag
      841 tacaaagcgt tagacgatgt aatgaagcag aacaacctgt cgccacagat ggcacaggaa
      901 gcgctacagc tacgtgctat ggctgagaaa gaccctatca tggcagtgcg cgacatagta
      961 gcgcgtgtgc tatcgacagg cgtgacaatg gagcagttgt ttggtaatga cgctgttcct
     1021 agcatcaatg ctcgtgtcat tactaatgaa cttgaccgta gactaggccc gctagagcgg
     1081 caaacgcaac agcaacagcg acaagcacaa attgctgaaa ctgcacaagt gcagatggaa
     1141 gaatttgttg ctagtcatcc ccatgctgag acacatggtg tggaaatcag caacttagta
     1201 gcacaacatg gcttaacgcc agaacgtgct tactttgaac tccgtagttg ggtagaacgc
     1261 agaggcttcg actttacaac accactccga ccacagatcg aggctgctat gaagcgccaa
     1321 cgtggtggca atggtagaag taggtcaact cccggcagta tgcgtggagt aagcgacgtt
     1381 cctactcaaa gcactactaa ttcgcgtgca gacttcagga gcaatgcacc gtggcgtgac
     1441 attgctgcag cggtcttcac agaactcaac aacaagtagg acacagacac aatgcctgta
     1501 ctccaaaacg tacttgctac tacaatcgag cgctcgcgta agaagctcat tgtagcagct
     1561 atgcagagca acgcgctcat ggcgtggtgc ttcgcacgtg accgcattga gaatgaaagc
     1621 agcggttaca acatcactaa tccactgttg accggcagaa atccgacagt gggcagctat
     1681 cagtactatg acagcttacc agtgcagcaa actcaagagt tcatcaaact tgagtatcgc
     1741 tggtcacgta tagctggcac agtcatcatc tctaaccaag aggaagacga gaacaaaggt
     1801 gagcaagctg cagttaagct gcttcagggc aaacttgagg ctcttgagct tagcatcaaa
     1861 gagaagttct caggctacct ctacggcttg ggcggtggca acgatcctaa tggtcttgca
     1921 ctccttatac ctgacgatcc tactactggc tctcttgccg gtgtggatcg tgcgttggaa
     1981 gtgcagtggc gaccttcgtc gtatgacttt gctggtactc tcaacagcac caacattgaa
     2041 gaagcatatg acgatgtatt gctcgacctt aaacaaggga cagagcgccc caaagtcatc
     2101 attgctggtc gtaatcacta ccgcctgtat cgtgctgctg ttcgtagcaa gcttaccata
     2161 ccacttacca acaccagcag cggcaagcgc atgatggacc ttggctttga tggtgtcagt
     2221 cacaatggtg tgccgatcat ctacgatgaa agctgtccag ttgatcgtgc atacttcctg
     2281 aatgacacct acctccgtct acacatcctc ggtgacaaca acatgaagaa tgttgacttg
     2341 acagcaccgt ggacaatcga cggctacggc cagcgtgtca tcacgcaatg tcaattctgc
     2401 acgtggaagc aataccgcac acacgcagtc gtcaacgatt aaccacaacg ctatacactg
     2461 tatagcatag gagcaagcaa tggctgaaac gccctcaacg gtgagcttcc aagagaagcg
     2521 cgcagcatat agcatggacg agcgtaagaa gcccgttcct gcatacacta tagagcctat
     2581 gaagcgtaag actgtagtca atcgcactgt gaaagatgag ataggcttcc gcattgtgcc
     2641 taccgatgta gaggttgaag gctacatggt tcgcactttg cgtggtgata gcgtatttct
     2701 gtcgcacgaa gatgttgtgc gtttgaagct cgaccgtaac cttgttccca tgttgatcga
     2761 aggcggtgac gatacaccag taggaatgca gcagatgaat gctgcattgt cagacaaaca
     2821 gaagacagcg ctcgatgttc tcacgcggct agtcgagagc gacccgtcgc tagtagaaaa
     2881 gctgcttgcg agcaaagagc cagagcaagt agaggaatag acacatggcg gtacaagttg
     2941 ctatccccgg tatgcgtcgc atcaacaacc gtgtagaagc gtgttgctac gcggctgatg
     3001 taggcgtcga tgggcttact actgttgaca ttcctgcacc tgttgcagcg cttgctacag
     3061 gtatcttgaa tgcacagtca atcgctgctg ctggcacttc atcgccagta gtcggtttca
     3121 gtcctagtgt gatgggccga tatggtcgta acgtgacagt tgtagctagc ggtgctgcta
     3181 catctaacgt cactgtgtac ggctttgact atctcggtca agctatgaag gagagcttca
     3241 cactcacagg tgctacacct gttgtcggca agaagatgtt tgctgacatt gtgaatgtgg
     3301 catatggctt gactgctggt acaactatca atgtcggtta tggtgctgtg ttgggagtac
     3361 cgtacaaagt gctcggcaca caaatcacta acgagttgac aagcgatgtg acaccgactg
     3421 caggtgccct tgtagctggt gtaactactc agacacttac tagcggtgat cctcgtggta
     3481 cttacacacc taacttagct cccgatggtg tgcggtccta caggttctcc tgtgcagtgg
     3541 accggaacaa tctacatggt tcggcccacg ttattgcgta gttctgaggg tgcgggcatg
     3601 agtggtctgt gtggttagtc caccacacag gccgctcgtg tatacttcgg ggagcttgca
     3661 atgattacat tcggtgacat tgttacaaag gtgttgcagc gcttggcgct cgtggagggc
     3721 cttgacgcgc agatatatgc agagccacgc atacagttag cagtacagca taagttcgac
     3781 atgatcttcc gcgagtactg gctacctgac tacaccacat accaagaacc acacacactc
     3841 gatggcgtca ctggcaccat tacagatgcc ctagatgaca agctaaaaga ctggcgcgat
     3901 ctgcacagtg tgttttggga aggatcacac aaaccactgc caatagcacc aatgaatgta
     3961 cgagacattg acattaacta tcctagctta cgaccactcg gcaataacaa gacaaagtgg
     4021 tttagagtgc tgccagttaa cactattggc aaggtgtacg tgacatatcg cactaagcct
     4081 aacgactttg aagaagacag cgatgagata ttcatggaca cgcagttgtt gatgttaggc
     4141 acgtgttggg acgtacttga agatgatggc acaaatcccg gcgctagcga caagtttcgc
     4201 atcttgtttc aggat
//
LOCUS       DATCGC010002240         1326 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_497275, whole genome shotgun sequence.
ACCESSION   DATCGC010002240 DATCGC010000000
VERSION     DATCGC010002240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1326)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1326)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1326
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_497275"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..684
                     /locus_tag="VIJ87_21285"
     CDS             <1..684
                     /locus_tag="VIJ87_21285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446948.1"
                     /translation="SCSAQLRDQQMLSNGLRLLGTQMNELQAPIQLEAGLLNAFRQAQ
                     VVKQLPVSRNYRRYWFAAVAALLLIVFSVIAFRMRNETKPVQHQAVAPTSVPQDSPVF
                     PKEETPQRREVVARNPKSVRKQRPVISNASMQARAGSNRKKDNNVVANHATNEVATEF
                     MPVGYLSVDALQDGGQIVRVELPRTTLVKFGLPVNMDRYNERVKADVLLGLDGMAHAI
                     RFVQEKRSQ"
     gene            715..>1326
                     /locus_tag="VIJ87_21290"
     CDS             715..>1326
                     /locus_tag="VIJ87_21290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446949.1"
                     /translation="MKRVLAILAAATFPVLAAVTVVSFAQQPQPTVQSNIVVKQRVMQ
                     GPEGIPPPPGADMNFMWTEVNFGGKTVKGAPYSAQAVTETIQTLSDGNRIVNKVTSQL
                     YRDTEGRTRREQTIKFHGDTVDAAEPLQTIFINDPVSGASYVLDSKSHTALKTGQFKI
                     ERHVTGVPGGVGVEGQRFEFRVEGSASGVVGNTSDGGPPPPGIP"
BASE COUNT          345 a          309 c          375 g          297 t
ORIGIN      
        1 agctgttcag cccaactgcg cgaccagcag atgttgagta atggattgcg cttgctcggt
       61 acgcagatga atgagttaca agcgccgatt caacttgaag cgggattgct caatgctttc
      121 agacaagcac aggtcgtcaa acaattaccg gtgtctcgta attatcgacg ctactggttt
      181 gcggcagttg ctgcgcttct cttgattgtg tttagcgtga ttgctttccg gatgcgcaat
      241 gagacgaagc cagtacagca ccaggcagtg gctccaactt ctgtgccgca ggacagtccg
      301 gtcttcccga aagaagaaac tcctcagaga cgagaagtag ttgctcgtaa tccgaaatcg
      361 gttcgtaagc agagaccagt tattagtaat gcgtccatgc aagcgcgtgc tggatcaaat
      421 cggaagaaag acaacaacgt agttgcaaac cacgcaacaa acgaagtggc taccgagttc
      481 atgcctgttg gttacttgag tgttgacgct ttgcaggacg gtggtcaaat agtgcgtgtg
      541 gagctgcctc ggaccacact ggtgaagttt ggactgccag tgaatatgga tcgctataac
      601 gaacgagtga aggccgacgt cttgttaggg ctggacggaa tggcgcacgc tatacggttt
      661 gttcaagaga agagatcgca ataatccggg ctaaggcctg aaaggaaaag agagatgaag
      721 agagtattgg caattcttgc tgcagcaacg ttccctgtgc ttgctgctgt gacggtggtt
      781 tcatttgccc agcagccgca gccgacggtt cagagcaaca tcgtcgtgaa gcagcgtgtc
      841 atgcagggtc cagagggcat tccaccacca ccgggtgccg acatgaattt catgtggact
      901 gaagtgaatt ttggtggaaa gacagtcaag ggagcgcctt attcagcgca agctgtcaca
      961 gaaacaatcc aaacgctgag cgatggtaat cgcattgtca acaaagtgac gagccaactt
     1021 tatcgcgaca ccgaaggtcg tactcgacgt gaacagacga tcaagtttca tggcgacaca
     1081 gtcgatgctg cagagccgct tcagactatt ttcatcaatg accccgtttc cggtgcgagt
     1141 tacgtgctcg attcaaagag tcacacggcg ctcaagacag gacaattcaa aattgaacga
     1201 catgtaaccg gagtacctgg aggagtaggt gtcgagggcc aacggtttga attcagggtt
     1261 gagggttccg cgtccggagt agtaggcaat acgtcggacg gtggtcctcc tccgccagga
     1321 ataccc
//
LOCUS       DATCGC010002241         1848 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_429343, whole genome shotgun sequence.
ACCESSION   DATCGC010002241 DATCGC010000000
VERSION     DATCGC010002241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1848)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1848)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1848
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_429343"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            200..541
                     /locus_tag="VIJ87_21295"
     CDS             200..541
                     /locus_tag="VIJ87_21295"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEY5446950.1"
                     /translation="MRSHSLHTILIALAAIVLIGCTAAGNKVTKIGQSPTVSQKATPE
                     TVVSDGAPRITIAELQEKIKKDEVFILDVRNQASFDAGHIPGSKLIPSGEILNHLDEL
                     PKDKLIVTYCS"
     gene            complement(793..1761)
                     /locus_tag="VIJ87_21300"
     CDS             complement(793..1761)
                     /locus_tag="VIJ87_21300"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEY5446951.1"
                     /translation="MYPFRNILFPTDFSQNSRAALKYAAAFARSGGGGGRILVFNVQG
                     AKVPQDLLKRPESWFAEQSRQWLIQVREDARKLLTDPLLKNVEAEAEFGDGEPATEIA
                     RAVVEHEIDLVTVVTRVRKRLARAFSGSIAEEIVAEAPCAVLAIRPPQREFVEQVDGK
                     VEIRLKRVLLATNFRPSSVAATSIATQISNHTHAELHAVYVIGDYFDQFSAMFPEGGL
                     AALTRLRSYVTERMTHLARTDGSRALTHIAEGRPYEEIVRLAVKTEADLIVIGTAVHN
                     SLFGGTPVLGSEIERVISNAPCPVLCVPAARVLTPLPAFVRQAVPT"
BASE COUNT          438 a          504 c          452 g          454 t
ORIGIN      
        1 ttcaagcacg cgattctttt tgcggctagg ccgccccagg gcgtagcctc tcctttaagt
       61 gacctgcgga aagccagagg ctttccgcgc gggagggcgg cacagccgca tatcctctgc
      121 gtgtcttcag ttgacaaacc attgcacgcc gtaacacatt agctctaact ctgctttcat
      181 tctaactcgg aggttcttga tgcgttctca ttcgctccac acaatcctaa tcgcacttgc
      241 ggctattgtc ttaatcggtt gcacggctgc cggaaacaaa gtcacgaaga tcggtcagtc
      301 gcccactgta agtcagaagg ccaccccgga aaccgtagtt tcagacggtg cacccagaat
      361 cacgattgcc gaacttcagg aaaagatcaa aaaggacgaa gtttttattc tcgatgttcg
      421 taaccaggct tcttttgatg cgggtcacat tccgggttca aagctgattc cttcgggtga
      481 aatcctcaat cacctcgatg aactgccgaa ggacaagctc attgtcacat actgttcttg
      541 accaaacgaa catacgtccg ccagttcggt ggtcgccctc aaaactaaga acatcacaaa
      601 cgcagccgca ctacttggtg gtttcaacga atggcaaaaa gaaggactgc cggtagataa
      661 gaagcagtaa gagatttcgg aattcgaagg ttggatttcg gattttgttt aatgcaggcg
      721 ttcctctaca gcttcaagtt cgaacgacag agctgacgaa atccgcagtc cgcaattcaa
      781 aatccgaaat tctcacgtcg gtactgcttg cctcacaaat gccggcagtg gtgtcaaaac
      841 tcttgcggct ggtacgcaca aaaccgggca cggtgcgtta ctgataaccc tttcaatctc
      901 ggaacctaga acaggggtac ctccaaatag tgagttgtga acggccgtac cgatcacaat
      961 taagtctgct tctgttttca ctgcaagcct gacaatctct tcatacggtc gaccctctgc
     1021 gatgtgcgtc agtgccctcg atccatctgt tcgggccaga tgagtcatcc gctcagtcac
     1081 gtaacttcgc aatcgagtca aggctgccag gccaccctca ggaaacatcg cggagaactg
     1141 atcaaagtag tcgccgatta catagactgc gtggagttct gcgtgcgtgt gatttgagat
     1201 ttgcgtcgcg attgatgtgg cagccactga ggatggtcgg aagttagttg cgagtaacac
     1261 gcgcttcaaa cgaatttcca ctttgccatc gacttgttcc acaaactctc gttggggtgg
     1321 tctgatagcg agcaccgcgc agggcgcttc cgctacgatc tcctcagcga tggagccact
     1381 gaacgctcgc gcgaggcgtt tgcgcacgcg cgttacaacg gtgacgagat cgatctcgtg
     1441 ttcgactacg gcccgcgcaa tttcggtggc cggttcaccg tcaccaaact cggcttctgc
     1501 ctctacgttc ttaagcaaag gatcggtaag cagtttccgt gcgtcttcgc gcacttgaat
     1561 gagccactgt cgactctgtt ctgcaaacca gctctcgggt cgtttcagca aatcttgagg
     1621 gaccttcgct ccctgcacat tgaacacgag gattcgtcct cctcctcctc cgctgcgcgc
     1681 aaaagcagca gcatacttca gcgcggctcg cgagttttgc gagaagtcag tcggaaaaag
     1741 aatgttccta aatggataca ttggtattta agatttcaga ttgccgattg cagactctct
     1801 taccctttag taaccagctt aatttcaagg acgcgctctt ctgggacc
//
LOCUS       DATCGC010002242         1307 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_163295, whole genome shotgun sequence.
ACCESSION   DATCGC010002242 DATCGC010000000
VERSION     DATCGC010002242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1307)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1307)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1307
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163295"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1307
                     /locus_tag="VIJ87_21305"
     rRNA            <1..>1307
                     /locus_tag="VIJ87_21305"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          329 a          305 c          407 g          266 t
ORIGIN      
        1 cgggagacag acgccgggtg ctaacgtccg acgtcaagag ggaaacaacc cagaccgccg
       61 tctaaggtcc ccaatgatta gctaagtggc aaacgaggtg ggaaggctca gacagccagg
      121 atgttggctt agaagcagcc atcatttaaa gaaagcgtaa tagctcactg gtcgagtcgt
      181 cctgcgcgga agatgtaacg gggctcaagc taggcaccga aatcgcgggt tcagggatca
      241 gaattcaggg atcaggaatc agattggcag cagcgcatcg gttcgaagaa ttggaagtgt
      301 ttcaacgggc ctacaaagtc tcgttggaca ttcatcgatt ttcgctcacg atgccgcaga
      361 tcgagcagta cgcgctcgca gatcaattgc gacgtgcgag caagtcgata tgcgccaatc
      421 tggcattcag ggatcaggaa tcaggtatca ggaatcagac cagcacgcgt ggttactgat
      481 tcctgatacc tgacgtctga ttcctgaaca cctgattcct gacttctgat tcctggacgg
      541 taggagagcg ttccgtaggc ctgtgaaggt gtctcgtaag ggatgctgga ggtatcggaa
      601 gtgcgaatgc tgacatgagt agcgataaac aaggtgaaag tccttgtcgc cgtaagccca
      661 aggtttcctg cgccacgtgc atcggcgcag ggtgagtcgg cccctaagac gagggcgaga
      721 gccgtagtcg atgggaaacg ggtcaatatt cccgtaccga tctgcaatgc gatgggggga
      781 cggagaaggt tatgccggcc gggtgttgga tgtcccggtt caagcgtgta gacgtgcctg
      841 gtaggcaaat ccgccgggct tagtcgaggc gtgttaacga ggactggctt gccagttcga
      901 agtggcggat accctgctcc caggaaaagc ctctaagctt cagttgcaga ttgaccgtac
      961 cgcaaaccga cacaggtggg cgagctgaat atgctcaggc gcttgagaga actcgggtga
     1021 aggaactcgg caaattgaca ccgtaacttc gggataaggt gtgcccttat taggtgaacc
     1081 cgtacagggg gagccgagaa gggctgcaaa aaatcggtgg ctgcgactgt ttaacaaaaa
     1141 cacagcactc tgctaacacg aaagtggacg tatagggtgt gacgcctgcc cggtgccgga
     1201 aggttaaatg atggggtgca agctcttgat tgaagccccg gtaaacggcg gccgtaacta
     1261 taacggtcct aaggtagcga aattccttgt cgggtaagtt ccgacct
//
LOCUS       DATCGC010002243         3029 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_133013, whole genome shotgun sequence.
ACCESSION   DATCGC010002243 DATCGC010000000
VERSION     DATCGC010002243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3029
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_133013"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1011)
                     /locus_tag="VIJ87_21310"
     CDS             complement(<1..1011)
                     /locus_tag="VIJ87_21310"
                     /inference="COORDINATES: protein motif:HMM:NF017263.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alginate lyase family protein"
                     /protein_id="HEY5446952.1"
                     /translation="MPGFLNCIAIALLTSLPFSDALGVKRDLLLGPQASSPAFVATEP
                     TLGNVGRRGRLRSQKSASVSSNASLKGTARRRAKDFNVLKFDRARVLKAANQYLKEAP
                     ITITASTSTRSAGGVHDFFSEGDYWWPDPQNPSGPYIQRDGMTNPDNFVEHRRHLMRL
                     SVQLPALVAAWKLTRDERYARQAVKHLRSWFIDESTRMNPNLQYAQAIHGRFTGRGIG
                     IIDTIHLVEVARAIEILKDSRSLSMTDLGGVILWFTDYLKWMTTSKNGIEERDAKNNH
                     GTCWVMQVAAFAELVGDQELRAYCRNRFKTVIVPNQIAPDGSFPEELRRTKPYGYSLF
                     NLD"
     gene            complement(995..>3029)
                     /locus_tag="VIJ87_21315"
     CDS             complement(995..>3029)
                     /locus_tag="VIJ87_21315"
                     /inference="COORDINATES: protein motif:HMM:NF025861.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycoside hydrolase family 97 catalytic
                     domain-containing protein"
                     /protein_id="HEY5446953.1"
                     /translation="DLHELKIGENEFGICRRWYFELCKAELTLMSDDKSGNIQSRRSF
                     VVGALALPIIAAELPKLLSAAQTSVQSVLSPNRHIRFELLGFDAMQLKYRITRNNIPV
                     IEDSVLGIGIAALHDMMDGVDRMGSRAIRRIGDLKLRETFATRGGHSVGLNYCNGARF
                     SVLTDTNYTLEVRVFNDGVAFQYVIPGDDKLRVPSEKTSFTIPNNSTVWFHDFYGHYE
                     GIHTKKEIAEVKTGEWAAPPLTIKLSNNSGYVAITEAALMNYAGMGLQADGQRGFKLV
                     LGDALPVSYPFELRYGKEEAKRLSQPAAIRGNIKSPWRVVMIAETLNELVNNQIIDAV
                     SPAPDKKLFPLGLDTSWVKPGRSVWKYLDGGENTLESMKEFSRLAGELGFEYNVVEGF
                     WQKWSEDQMRELANYAKQYKVGTWFWKHSKDLRTPYARRQFFELLNRVGVVGTKIDFF
                     DHEAKEIIDLYQALLREAAEHQIMVEFHGSNKPAGESRTWPNEMTRESIKGMEYSRQT
                     ERAAHNVTLPFTRFLAGHADYTAMHFGERRKDTSWAHQIASAAIFTSPMLIFAANPKN
                     ILANPAVDLIKSIPSVWDETVVLPSSEIGELAAFARRNGNTWFLAIMNGPASQKRIEV
                     PLTFLNRRTSGAVLVKDNLDNPAAVEIEKVQVQSRQPLSITMRAGGGFIARFS"
BASE COUNT          709 a          839 c          738 g          743 t
ORIGIN      
        1 gtcgagattg aaaagtgaat agccgtacgg ctttgtgcgt cgcagttctt ccgggaaact
       61 tccatcaggc gcaatttggt ttggaacaat gactgtcttg aaacgattcc ggcaataggc
      121 ccggagttcc tgatcgccaa ccagttctgc gaacgccgcc acctgcatca cccagcaagt
      181 accatgattg ttctttgcgt cgcgctcttc aatgccgttc ttactggtcg tcatccattt
      241 cagataatcg gtgaaccaca gaataacgcc gcccaggtca gtcatactta acgaccgcga
      301 gtcttttaga atctcgatcg ctcgggcaac ttcgacgaga tgaatagtgt cgatgatccc
      361 gataccgcgt cctgtgaatc gaccgtgaat cgcctgcgca tattgcaggt tgggattcat
      421 ccgggtcgac tcgtcgatga accaggaccg caagtgcttc actgcctgac gcgcatatcg
      481 ctcgtctctt gttaacttcc aggctgcgac taacgccggg agttgaacac tcagccgcat
      541 caaatgacga cggtgttcga cgaagttatc cggattcgtc atgccatcac gttgaatgta
      601 aggaccggaa ggattctgcg gatcgggcca ccagtaatca ccttcagaaa agaaatcgtg
      661 aacgcctcca gcgctacgcg tagaagtgga tgcagtgatt gttatcggcg cttctttcaa
      721 gtattggtta gcagccttaa gaacacgagc gcgatcgaac ttcaagacat taaagtcttt
      781 cgctcttctc cgtgcggtac cctttagtga cgcgttcgaa ctaacggacg cgctcttctg
      841 ggaccgcagg cgtcctcgcc tgccaacgtt gcccaaagta ggctcagtgg cgacgaatgc
      901 aggcgaggac gcctgcggtc ccagtaagag gtcccgcttt actcccagcg cgtcactaaa
      961 gggtaacgaa gtcagcagag caatggcgat gcagttaaga aaacctggca atgaatccac
     1021 ctccagcccg catcgttatt gataatggct gccggctttg gacttgcacc ttctcaattt
     1081 ccactgcggc cgggttgtcg agattatctt tgaccaacac tgccccgctt gtgcgccggt
     1141 taagaaatgt caggggcact tcgattctct tttgcgaggc aggtccattc atgattgcca
     1201 gaaaccaggt attaccgttt cgccgcgcaa acgcagcgag ttcaccaatc tctgacgaag
     1261 gcagcacgac cgtttcatcc caaacactcg ggatactctt aatcagatcg accgccgggt
     1321 tggcaagaat gtttttcgga ttcgccgcga agatcaacat cggcgacgtg aagatcgccg
     1381 cgctcgcaat ctgatgcgcc cacgaagtgt ctttccgacg ttctccaaaa tgcatcgcag
     1441 tgtagtcagc gtggccggcg agaaagcgtg tgaacggcag tgtcacgttg tgtgcggcac
     1501 gctcggtttg acgactatac tccatcccct tgatcgactc gcgcgtcatt tcgtttggcc
     1561 aagtgcggga ttcgccggcg ggcttattcg agccgtggaa ctcaaccatg atctgatgtt
     1621 cggcggcttc tcgcaaaagc gcttggtaga gatctatgat ttccttcgct tcatgatcga
     1681 agaagtcgat ctttgtaccc accacaccga ctcgatttaa caactcaaag aactggcggc
     1741 gcgcataggg agtgcgaaga tctttactgt gtttccaaaa ccacgtccca actttgtatt
     1801 gctttgcgta gttggctagt tcgcgcatct ggtcttctga ccacttttgc cagaagcctt
     1861 cgacgacgtt gtattcaaaa cccaactcac cggccaaacg tgaaaactcc ttcatcgatt
     1921 cgagagtgtt ttcaccgccg tccaggtatt tccaaacgga acgaccgggc ttcacccagc
     1981 tcgtgtctag cccaagcgga aacagtttct tatcaggtgc gggcgaaaca gcgtcaatga
     2041 tctgattgtt caccaactcg ttgagcgtct cagcaatcat caccactcgc cagggcgatt
     2101 tgatattccc tcgaatcgcc gcaggttgcg acaaacgctt cgcttcctct ttgccatacc
     2161 gaagctcaaa tggataactc acgggcagcg catcacccaa aactaatttg aacccacgtt
     2221 ggccatctgc ctggaggccc atacctgcat agttcatcaa cgcagcttca gtgatcgcga
     2281 cgtaacctga attgttggac agcttgatcg ttaatggcgg cgcggcccac tcgccagttt
     2341 tgacttcggc tatctctttc ttcgtatgga ttccttcgta gtgtccgtag aaatcatgaa
     2401 accagacagt gctattgttg ggaatggtga atgaagtttt ttccgacggc actctgagtt
     2461 tgtcgtcgcc gggaattaca tactgaaaag cgacaccatc attgaacacg cgaacttcaa
     2521 gcgtgtagtt cgtatcagtg aggactgaaa atcgcgcgcc gttgcagtaa ttcagtccga
     2581 ctgaatgccc tccgcgcgtc gcgaacgttt ctctcaattt taaatcgcca attctcctga
     2641 tagctcgcga ccccattcga tcaacaccat ccatcatgtc gtgcagagcg gcgatgccaa
     2701 tcccgaggac tgagtcttcg atgacgggaa tgttgttgcg tgtaattcga tacttcaact
     2761 gcatcgcatc aaagccgagc agctcaaatc tgatgtgacg attagggcta agcacagatt
     2821 gaacgctggt ctgagctgcg ctcaacagct tcggcagctc tgctgcaatg atcggcaacg
     2881 cgagggcgcc gacaacaaac gaacgccgtg attgaatatt gcctgacttg tcgtcactca
     2941 ttaacgtcaa ctccgctttg cataattcga aataccacct ccggcagata ccaaactcat
     3001 tctccccaat cttcagctcg tgtaaatcg
//
LOCUS       DATCGC010002244         1996 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_133038, whole genome shotgun sequence.
ACCESSION   DATCGC010002244 DATCGC010000000
VERSION     DATCGC010002244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1996)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1996)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1996
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_133038"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(35..430)
                     /locus_tag="VIJ87_21320"
     CDS             complement(35..430)
                     /locus_tag="VIJ87_21320"
                     /inference="COORDINATES: protein motif:HMM:NF024834.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEY5446954.1"
                     /translation="MKLVALALACVALALVVIACTETATPTNSSTPASAASPPKPVDE
                     LAASRANYQKNCEGCHSETGEGGTVKIEDKQIKVPSLKSDHAMKRTDEQLTKMITNGE
                     EQMPAFKDKLKPEEIAAMVKFVRKHFQGK"
     gene            complement(599..1924)
                     /locus_tag="VIJ87_21325"
     CDS             complement(599..1924)
                     /locus_tag="VIJ87_21325"
                     /inference="COORDINATES: protein motif:HMM:NF012263.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b N-terminal domain-containing
                     protein"
                     /protein_id="HEY5446955.1"
                     /translation="MTDLHRSPVSSVSMWLKSTGGVVLMLLVVQFATGCFLAFYYVPS
                     VDHALTTVSFIEKVLSSGAWLRSLHHYGSQWLPLFLFLHLIQLVSCEAYKFRRAHWIA
                     AVLLLGLAMAAGGTGYSLPWDARAFFSTRVAEGLVGGLPFAGRVSRLWLLAGSDISTL
                     TLSRFFALHVLVTPFLILLVVGWRLATLGGQQTICWPAINRNVIAGGVVFLALAIWAL
                     KVPAPLGPSVAEVTSDYLPRPGAQFLWLYQTLKYVPGGLGSIVGVVIPSLALLILLLL
                     PWLDLALLERLSKRPQFLIASLIFAGAAMWIVTMTTTSYLSDRRDPRIRAQMVRQEQQ
                     EKVFREAPFKPVALKMSAADDSEAIPNAYVRQCAVCHGARGEGITRGSLRFPPLIGIS
                     SKPRRTVEDIIALLNDPIAYGLEPPMRSFANKLTEDQKQEIAEWIVKLK"
BASE COUNT          499 a          542 c          494 g          461 t
ORIGIN      
        1 aagttcgaag caccaagcac aaagctctaa ctccttactt cccctgaaaa tgctttcgaa
       61 caaacttcac catcgccgca atctcctcag gcttgagttt gtctttgaac gcgggcatct
      121 gttcttcgcc attcgtgatc atctttgtaa gttgctcatc ggttctcttc atagcgtgat
      181 ccgacttaag tgaaggcact ttgatctgtt tgtcttcgat tttcacagtt ccgccttcac
      241 cggtttcgct gtgacagccc tcacaattct tctggtagtt cgcacgcgag gcggcaagtt
      301 cgtctacagg cttcggtggt gatgcagcag aggctggcgt agagctgttc gttggtgtcg
      361 cagtctcagt gcaggcaata actaccaagg ccagtgcgac gcaggctaat gcaagtgcta
      421 ctagtttcat ctagctgttc tcctgattct aatttgtttg atttgattcc agttcaatat
      481 ggatttcttc tctgtgcaac ctctgtgtcc tctgtatctc tgcggtgaag agctggtcac
      541 cacggagaca cagaggacac agaggttgca cagagaaggg aatccttttg gccgacattc
      601 atttcaactt cacgatccac tccgctatct cctgcttttg gtcttcagtc aacttgtttg
      661 caaatgatct catcggtggc tcgaggccat aagcgatggg atcgtttagc agtgcgatga
      721 tgtcttccac agtccgacga ggttttgagg aaatgcctat caatggcgga aatcttagac
      781 tccctcgagt tataccttcg ccgcgcgctc catggcagac cgcgcactgg cgaacgtaag
      841 cgttcggaat tgcctcggag tcatccgcag cgctcatttt caacgcaacc ggtttgaatg
      901 gcgcttcacg aaacaccttc tcttgttgct cctgcctcac catttgtgcc cgaatgcgcg
      961 ggtctcttcg atcgctcaaa taggaagtgg ttgtcattgt gactatccac atcgccgcac
     1021 ccgcaaaaat caaactggcg atgaggaact gtgggcgttt cgatagtctc tctaacaacg
     1081 caagatcgag ccacggaagc agcaacaaaa tcagaagcgc aagactcgga atcacaaccc
     1141 cgacaattga gcctaatcca ccagggacat acttaagagt ttggtaaagc cagagaaact
     1201 gcgcgcctgg ccgtggcagg taatctgagg tgacctctgc gacagacgga ccaagcggcg
     1261 ccggaacctt taacgcccag atcgcgagtg caagaaagac cacacccccg gcgattacat
     1321 tacgatttat cgcgggccaa catatggtct gctgcccacc caacgtcgcc aatctccagc
     1381 cgacaaccag cagaatcaga aacggtgtca ccagaacatg cagagcgaag aatcgtgaaa
     1441 gagtcagcgt cgagatatcg ctgcccgcga gcaaccacaa tctcgaaact ctgccagcga
     1501 aaggtagtcc gccaacaaga ccttcggcga cgcgtgtgct aaagaatgcc ctcgcatccc
     1561 atggtaacga gtaacctgtg ccacctgctg ccatcgccaa cccgagcagg aggaccgcgg
     1621 caatccaatg cgcgcgcctg aacttgtaag cttcgcacga gacaagctgg ataaggtgaa
     1681 gaaagagaaa caacggcagc cattgagatc cgtagtgatg cagtgaacgc agccaggctc
     1741 cggatgacaa cactttttcg ataaacgaaa cggttgtgag tgcgtggtcg acagaaggga
     1801 cgtagtaaaa agcgaggaag caaccggtgg caaactgaac gacgagaagc atcaacacaa
     1861 cgccgccggt tgacttgagc cacatcgaga ctgacgaaac tggacttcgg tgcagatccg
     1921 tcatgttcgt ttgatcgtct ccgtcgagtt gttttcaaac gattgatact gcacctgtaa
     1981 cgttccgtcc tgaact
//
LOCUS       DATCGC010002245         2118 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_264768, whole genome shotgun sequence.
ACCESSION   DATCGC010002245 DATCGC010000000
VERSION     DATCGC010002245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2118
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_264768"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1086)
                     /locus_tag="VIJ87_21330"
     CDS             complement(<1..1086)
                     /locus_tag="VIJ87_21330"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen-III oxidase family protein"
                     /protein_id="HEY5446956.1"
                     /translation="MTNTSQTTTQVGNYFVSNYPPFSQWKPDFVGEAIEALDQPARTD
                     EPFGLYLHIPFCRKRCKFCYFKVYTDKNANEIEVYLNALIKEAECYARTRAFQGRELR
                     FAYFGGGTPSYISERQLEHLVEGLNRHVTWNNAEEVTFECEPGTLRRSKLETLKNIGV
                     TRLSLGAEHFDDELLAANGRAHLSAEIYDVYETARQVDFPQINLDLIAGMVGETEAKW
                     RDAVRKALELQPDSVTIYQMELPYNTIISQEILKEGKESPIADWPTKQRWLNYAFDEF
                     QAAGYQIASAYTLATTKKPCRFIYTDALWHGGDMIGLGVSSFSHFGGVHFQNVHSFEE
                     YISLIEKNELPLLRALTLTTKQKLIREM"
     gene            1506..>2118
                     /locus_tag="VIJ87_21335"
     CDS             1506..>2118
                     /locus_tag="VIJ87_21335"
                     /inference="COORDINATES: protein motif:HMM:NF013188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEY5446957.1"
                     /translation="MSSKRSQSTNYFYYLALLIIFGVGLWLIIAAGSKLNKSGSAGSA
                     SSSTQSAQPAAKSSDKSPVSVLLLQVILIIVVAKLFGAIFRRIHQPPVMGEMVAGIAL
                     GPSLLGWLWPQASAFLFPATSMTTLGVFSQIGVVLFMFVVGVELDLQHLKEKASSAIM
                     VSHASIVVPFLLGAALSLSLYTSLAPDKTSFTAFALFMGIAMSI"
BASE COUNT          468 a          535 c          541 g          574 t
ORIGIN      
        1 catctcgcga atgagtttct gcttagtcgt tagtgtcaac gcgcgcagca acggcaattc
       61 gttcttttcg attagtgaaa tgtattcctc gaagctgtgt acgttttgga agtgcacacc
      121 accaaagtgc gagaaggacg acacacctaa accaatcatg tcgccgccat gccacaacgc
      181 atcggtgtag atgaagcggc agggcttttt cgtggtagct aacgtgtaag cgctcgcgat
      241 ttgataacca gcagcttgaa attcatcgaa ggcataattc agccaacgtt gcttcgttgg
      301 ccaatctgcg atgggcgatt ccttgccttc cttaagaatc tcttgcgaga tgatcgtgtt
      361 gtaaggcagt tccatctggt agatcgtcac ggagtcaggt tgcaactcaa gcgccttacg
      421 aaccgcatcg cgccactttg cttctgtctc acctaccatt ccggcgatca aatcgaggtt
      481 gatctgcggg aagtccacct ggcgggctgt ttcgtaaacg tcatagattt cagctgacaa
      541 gtgtgcacga ccgttggccg ccaggagttc atcgtcgaaa tgttcggcgc cgaggctcaa
      601 gcgtgtgaca ccgatattct tcaaggtctc caactttgat cgacgcagag ttccgggttc
      661 gcattcaaac gtgacttctt cggcgttgtt ccaggtgacg tggcgattca atccttcgac
      721 taaatgctcg agctgccgtt cactaatgta agacggcgtg cccccaccaa aatatgcaaa
      781 tctcagttcc cgaccctgga aggctcgtgt gcgcgcgtaa cactccgctt ccttaatcag
      841 agcattcaag taaacttcga tctcgttggc gttcttatcg gtgtagactt tgaagtaaca
      901 aaacttgcag cgcttgcgac aaaatggaat atgcaaatag aggccgaatg gctcatccgt
      961 gcgagctggt tggtctagtg cttcgattgc ctcgccaacg aagtcaggct tccattgtga
     1021 aaacggcggg tagtttgaaa caaagtagtt cccaacttgc gtagttgtct gagacgtatt
     1081 cgtcatgagc ccttatgttg actgtgtgat tattgctaat gttccgaaat tctggagact
     1141 tatcctgaaa cacccgggtc gagcagacgt agactttggc cgtctaggat ttcaagttta
     1201 gaaattagca tgcatgcgac cgcggatcaa ttagagctat attttgatgt attgataatt
     1261 tttgcgcgag agactaatac gtggtcgggt ctcaagagtt tcaaggcaac cgcttaccgg
     1321 ttcgcgggat gatgaagtca gtaccgctgc gcggtagcgt gtggcttgaa ttgtcgagaa
     1381 tcgctatacc cggtccagag ccacacgcta ccgcgcagtg gtactgactt caacgccact
     1441 aggttgcgag agaaagcgcc ttactttcga attcagctag aaaactaccc cagtcgaggc
     1501 ccctattgtc atccaagcgc agtcagtcta ccaattattt ctattacctg gctcttctga
     1561 tcatcttcgg agtgggcctt tggttgatca ttgccgcagg ttccaagctg aataagtcgg
     1621 ggagtgccgg tagtgcgtcg tcaagtacgc agtctgctca accagccgca aaatctagtg
     1681 acaagagtcc agtcagtgtc ctgcttctgc aagtcattct cattattgtt gtcgccaaac
     1741 tcttcggcgc gatatttcga cgtattcatc agccaccggt catgggtgag atggtggcgg
     1801 ggatcgcgct cggcccatcg ctactagggt ggttgtggcc ccaggcctcg gctttccttt
     1861 tcccggcaac ttctatgacg acgctcggtg tgtttagtca aatcggcgtc gtgcttttca
     1921 tgtttgttgt tggcgtggaa ttggatctcc agcacctgaa agaaaaagcc tcgtcggcga
     1981 tcatggtcag ccatgcgagc atcgtggttc cgtttctgct tggcgctgcg ttgtctctgt
     2041 ctctttatac ctcgcttgcc cctgacaaga cctcgttcac tgcatttgcg ctcttcatgg
     2101 gcatcgcaat gagcatta
//
LOCUS       DATCGC010002246         1156 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_497425, whole genome shotgun sequence.
ACCESSION   DATCGC010002246 DATCGC010000000
VERSION     DATCGC010002246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1156)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1156)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1156
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_497425"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(150..>1156)
                     /locus_tag="VIJ87_21340"
     CDS             complement(150..>1156)
                     /locus_tag="VIJ87_21340"
                     /inference="COORDINATES: protein motif:HMM:NF014686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptide ligase PGM1-related protein"
                     /protein_id="HEY5446958.1"
                     /translation="KFFPLGTKSGCRKIFMEENAPYPLGREDIGSKEDLVNAIAQMRR
                     TKPSIKQVMVKLNEGVSGEGNAVIDLTGLPAPGDSKEIAMLDHRLPSMKFESQEVTYE
                     SYMKKLQERKGVVEERIMGEEFRSPSVQLRVTPLGKVELLSTHDQLLGGPSGQSYLGC
                     VFPADTAYAPVITREAAKVGKRLAKEGVIGRFALDFVVVRAKDGTWEPYAIEINLRKG
                     GTTHPFLTLQFLTDGTYDTETGIFTAPNGQQKFFVASDHVESPRYRTLTPDDLFDIVV
                     WHNLHFDQTRQTGVVFHMMSALGELGRTGLTAVGNSHEDAKALYDRAIAVLDEETRNV
                     "
BASE COUNT          259 a          331 c          284 g          282 t
ORIGIN      
        1 caaatatgcc ggttagggcg ccaaagccat cctgatgcac caggaacttg atgcggatgg
       61 tctggcccac gtacgaggca agatgtcaat aggctagtga aacgtttttg ttccttggtt
      121 gccgcttatc gctccaagga ctcaacgaat caaacgttgc gggtctcctc atcaaggaca
      181 gcgatcgcac gatcgtacaa ggccttcgca tcctcgtggg agttgccaac tgcggttagg
      241 cctgtccttc ccagctcgcc caacgcgctc atcatgtgaa aaaccacacc tgtctggcga
      301 gtttgatcga aatgcaggtt gtgccacacg acaatgtcga acaggtcgtc cggagtaaga
      361 gtccgatagc gcggcgactc tacgtgatcg ctggccacaa agaacttctg ctgaccattc
      421 ggagccgtga agatgccggt ctccgtatcg taagttccat cggtaagaaa ttgaagagtc
      481 aaaaacggat gagtggtgcc gccttttctt aagttaatct caatcgcgta cggctcccaa
      541 gttccgtctt tcgcgcgtac gaccacaaaa tccagcgcaa agcgaccgat cacaccttct
      601 ttggccagac gtttgcctac ctttgcagct tcgcgtgtaa tcacaggagc gtaagcggtg
      661 tcggccggga aaacgcagcc gagatagctt tgcccgctcg gtccgcccaa gagctggtca
      721 tgcgttgata acagttcaac cttaccgagc ggcgtgacgc gaagctgcac gctggggctt
      781 ctgaactctt ctcccatgat ccgttcctcg acgactccct tacgctcctg caacttcttc
      841 atgtaactct catacgtaac ttcttgtgac tcgaacttca tggaaggcag tcgatggtct
      901 aacatggcta tctccttcga gtcaccgggc gcagggagcc ctgttaaatc aattaccgcg
      961 ttgccctcgc cggagacgcc ttcattcagt tttaccatta cctgcttgat cgaaggcttg
     1021 gtcctccgca tctgtgcgat cgcgttgacg agatcttcct tactgccgat atcttcgcga
     1081 cccaaaggat atggagcatt ttcctccata aaaattttgc ggcacccact ctttgttccc
     1141 agcgggaaaa actttg
//
LOCUS       DATCGC010002247         1001 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_133110, whole genome shotgun sequence.
ACCESSION   DATCGC010002247 DATCGC010000000
VERSION     DATCGC010002247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1001
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_133110"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..645
                     /locus_tag="VIJ87_21345"
     CDS             <1..645
                     /locus_tag="VIJ87_21345"
                     /inference="COORDINATES: protein motif:HMM:NF013183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HEY5446959.1"
                     /translation="DQTPGQDQIRDSNNFSLGAYAELAGALVERLPLTVDETSELKNT
                     IMKASETCDVIVTSGGVSMGVYDFTKTALKELGAELFFERVALRPGKPTVFARLPNGT
                     LVFGLPGNPVSVSVTFSLFARTALLAMQGASEPALISEKGVLAKPIKGNPERESYLPA
                     QLTTNDDGQLVVFPLKWGGSSDFVAFARATALVIIPAGAKTWETYSLVKIVRLT"
     gene            complement(707..>1001)
                     /locus_tag="VIJ87_21350"
     CDS             complement(707..>1001)
                     /locus_tag="VIJ87_21350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446960.1"
                     /translation="VQEESIHASFYWNIARIKLAEKKFARNLARFVIARFWTPVGQGA
                     KREHETNQVLKTLFKGANGLKDFHRTVTARIERLPGFDGFNGLTERIAAGLQG"
BASE COUNT          246 a          267 c          251 g          237 t
ORIGIN      
        1 gatcaaacac ccgggcagga ccagattcgc gattcaaaca acttttctct cggcgcttac
       61 gcagaacttg ccggtgcact cgtcgagcga cttccactga ccgtggacga aacgagcgaa
      121 ttgaaaaaca ccatcatgaa agcgagcgaa acctgcgacg tgatcgtaac gtctggcgga
      181 gtctcgatgg gtgtttatga ttttacgaag acagcactta aggaactggg cgcggaattg
      241 tttttcgagc gagtggccct gcgaccaggg aagcctaccg tgttcgcgcg tttgccaaac
      301 ggcacattgg tctttggtct tcccggtaat cccgtgtccg tctcggtaac gtttagtctt
      361 tttgcgagaa cagcgctgct cgcgatgcaa ggtgcgagtg aacccgcgct catctccgaa
      421 aaaggagtac ttgccaaacc tatcaaagga aaccctgaac gagagagtta cctacctgca
      481 cagctgacca ctaacgatga cgggcaactc gtagtcttcc cgttgaagtg gggaggctcg
      541 tccgactttg tcgcctttgc gcgcgcgaca gcgttagtaa tcattcctgc cggtgcgaag
      601 acctgggaga cttattcact cgtaaagatt gtacggctaa cctaaacaga aaagggatgc
      661 cgacttaatc gacatccctt ccggaacccg aaaatgaatt acgtcttcag ccttgaagtc
      721 ctgccgcgat tctttcagtc aagccattaa acccgtcgaa acctggcagc ctctcaattc
      781 gtgctgtgac agtgcgatgg aaatctttca atccgttagc gcccttaaat aaagtcttca
      841 ggacttgatt cgtctcgtgc tcgcgctttg ctccctgccc gacgggtgtc caaaaacgag
      901 caataacgaa gcgcgcaaga ttacgtgcaa acttcttctc ggcaagtttg atcctggcaa
      961 tgttccaata gaagctggca tggattgatt cttcctgaac g
//
LOCUS       DATCGC010002248         1888 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_465049, whole genome shotgun sequence.
ACCESSION   DATCGC010002248 DATCGC010000000
VERSION     DATCGC010002248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1888)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1888)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1888
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_465049"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..376
                     /locus_tag="VIJ87_21355"
     CDS             <1..376
                     /locus_tag="VIJ87_21355"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY5446961.1"
                     /translation="GKIINISSVAGKMAYALRSPYSASKWGMLGLSASLAQELGPHNI
                     QVNAICPGPTAGDRMTAVIAGRAREMGASTEEIKSAYVEGTALKRMVDPQHVAAAVVF
                     FCSEEGDSITGEALEVSAGYAI"
     gene            557..1795
                     /locus_tag="VIJ87_21360"
     CDS             557..1795
                     /locus_tag="VIJ87_21360"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY5446962.1"
                     /translation="MKFIETLKLALAAIWQHKLRSALTLLGMIVGVTAFVVVVSLIQG
                     FNRYVDEKIAGIGAKSFTIQRFNPLEDFKDTDTIAAAQQRNKELTLDDYDYLKQRATL
                     IGKIGAKARGTPVIVKRDTQILEDVFVSGATANCVDIENRDVADGRFIAEPEDESAAR
                     VAYVGADVATKLFPAGNPVGQEITIAGLPYRVIGVEVAKGTVFGIPQDNFIVIPLKTY
                     AVNYGGLIRQRSLFFIATSKTDELFNDAVEEARFLMRARHKLQPNEKDNFGIVTPDAI
                     TGLRDRIFGTIFIVAMLVPGIALIVGAIVIMNIMLVSVTERTKEIGIRKSLGARQIDI
                     LKQFLVEAVTLASLGGAIGILNAWIIGKVVTAVFFPTYLSLLAIALALVASGGAGALS
                     GIFPAWKAARLDPIEALRAD"
BASE COUNT          465 a          483 c          495 g          445 t
ORIGIN      
        1 tggaaaaatt atcaatataa gttcggtcgc cggcaaaatg gcctatgcct tgcgctcccc
       61 ttactcggcc tctaaatggg gaatgctggg cttgtctgcg tcgctggcac aagaactcgg
      121 cccacacaat attcaagtga atgcgatctg ccccggaccg acagccggtg atcggatgac
      181 cgcagttatt gccggaagag cgcgggagat gggggcgtcc accgaagaaa ttaagagtgc
      241 ctacgtcgaa ggcacagcgc taaaaagaat ggtagatccc cagcacgtgg ccgccgccgt
      301 tgttttcttc tgctcagaag aaggcgacag catcacaggt gaagccctgg aagtcagtgc
      361 gggctatgcg atttgaacca tgtcttttat gctctgtccg atatgcttta gcttgtcgct
      421 gtgatacaaa actcgcccgc agcgtttttc cgtacctgcg ttcgtttact cgatatgttg
      481 tcttagaatt ttcagcaaca agctgaagca tatcggacat ttgcaaccat tttcttagcc
      541 aaaccgtagt aacgccgtga aattcatcga aaccctgaaa cttgctctgg ccgcaatttg
      601 gcagcacaaa ctacgttccg cccttacgct cctgggtatg atcgtcggtg tcacggcatt
      661 tgtcgtcgtt gtctcgctga tacaaggatt caaccgctac gttgacgaga agatcgcggg
      721 cattggagcc aagtctttca cgatccaacg attcaaccca ctcgaggact tcaaagacac
      781 agacacgatc gctgcagctc agcaacgcaa taaggaactg acgctcgacg attacgacta
      841 cctgaaacaa cgtgcaactc taataggtaa gattggggcc aaagcacgag gaacaccggt
      901 gatcgtgaaa cgcgacacac agattctgga ggacgtcttc gtctcgggcg caaccgccaa
      961 ttgcgttgat atagaaaatc gagatgttgc cgacggtcgc tttatcgctg aaccagaaga
     1021 tgagagtgcc gcacgggtgg catatgtagg cgcggatgtc gcaaccaaac tctttccggc
     1081 cggtaacccg gtaggtcagg aaatcactat cgcgggactt ccctatcgcg tcattggagt
     1141 tgaagttgcc aagggaaccg tttttggaat tccgcaggac aatttcatcg tcattccgct
     1201 aaaaacctac gcggtgaact acggcgggct catccgacaa cgttctttgt ttttcatcgc
     1261 tacttcgaaa actgatgagc tctttaacga tgccgtcgaa gaagcgcgat tcttaatgcg
     1321 cgcacgacac aagttgcagc caaacgagaa ggacaacttc gggatcgtta cacccgatgc
     1381 aattactgga ctacgcgatc gaatcttcgg gacgatcttc atcgtcgcca tgctggtgcc
     1441 gggcattgcc ttgattgtgg gcgccatcgt gatcatgaac atcatgctcg tctcagtcac
     1501 cgagcggacg aaggagattg ggatacgcaa gtcgctcggc gcacgacaaa tcgacattct
     1561 gaaacaattc ctggtcgaag ctgtgacgct ggcatcgctg ggaggcgcaa ttgggatctt
     1621 aaatgcgtgg attattggta aggttgtgac ggcagtattt ttcccaactt atctctcgtt
     1681 gctggcgatc gcgctcgcac tcgttgcgtc tggtggtgcc ggtgcgctct cgggcatctt
     1741 tccggcatgg aaggctgcgc gactcgatcc gattgaagcg ctaagggctg actgaaaaaa
     1801 ggtcctttga ttcttgatcg taggtcaaga ccaaagaccg tacaaccaaa ggtcactgat
     1861 atgaagatta ttcgaagcga catctacg
//
LOCUS       DATCGC010002249         1396 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_264847, whole genome shotgun sequence.
ACCESSION   DATCGC010002249 DATCGC010000000
VERSION     DATCGC010002249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1396)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1396)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1396
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_264847"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1093)
                     /locus_tag="VIJ87_21365"
     CDS             complement(<1..1093)
                     /locus_tag="VIJ87_21365"
                     /inference="COORDINATES: protein motif:HMM:NF017745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 family protein"
                     /protein_id="HEY5446963.1"
                     /translation="MNPSSDYSTLQTLAQKFWTWRAQHMPISYDDIPRIDRPPGWVPN
                     WSAEAIASRRNDLAGFTEESASIDPSSWPINQQVDYRLISSAIARVRWELDVTRSHEV
                     NPDFYVHQTLGAIFLLLLSPDPFDAERCKEIITRMRSIPSTVEHGKQNLAESAIRPFA
                     MAAIDKVRDVRDRLNKVVAELKPFFEPNASVQLEQGKDEAVDALESFRDWLEAGLPKM
                     SEDTAVGREAYCFFLSNVALMPFTPEQLLDSAKQEWERSVTFETFERIRNAGVPELPV
                     FENQAAQIKREAELENDVRQFLEARNILSVPDWVKHYHNLPLPSYLAPLSFMGVTDDL
                     TSANRLDQDGISYIKVPSPDLDYFSLSIAR"
     gene            1208..>1396
                     /locus_tag="VIJ87_21370"
     CDS             1208..>1396
                     /locus_tag="VIJ87_21370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446964.1"
                     /translation="MRQPDQTNGRALPEPLLGLNKLGKGAAETWTLQLLTSSAPPLRF
                     TCYSSFASKVDFGGNEFRV"
BASE COUNT          332 a          348 c          379 g          337 t
ORIGIN      
        1 cgcgcgcgat tgaaagagag aagtaatcaa gatcaggcga cggcaccttg atgtagctaa
       61 tgccatcctg gtccagccgg ttcgcggatg tcagatcgtc cgtgacgccc atgaaagaaa
      121 gcggggccag gtaagacggc agcggaagat tgtgatagtg cttgacccaa tcaggcacgc
      181 tcagaatatt cctggcctcg aggaattgtc gtacgtcatt ttcgagttct gcttcgcgct
      241 tgatttgggc ggcctggttt tcaaagactg gtaactctgg cacacctgca tttctgattc
      301 gttcgaaagt ctcaaaagtg accgagcgtt cccattcctg cttcgccgag tcgagtagtt
      361 gctcaggcgt aaacggcatc aacgcgacgt tgctgaggaa gaagcagtag gcctctcgac
      421 cgacagctgt gtcctctgac atcttcggta gaccagcctc gagccagtct cgaaatgatt
      481 ccagcgcatc aaccgcctcg tctttaccct gttcaagctg aactgaagca ttcggttcaa
      541 agaatggctt gagttcggct acgactttgt taaggcgatc ccggacgtcg cgaaccttgt
      601 cgatcgcagc catcgcaaac ggtctgatcg cgctttctgc aagattctgt tttccatgct
      661 caacggttga aggaatactt cgcatgcgcg taatgatctc tttgcaacgc tccgcgtcga
      721 aaggatctgg actcagcagg agtaaaaaga tcgcgccgag ggtttggtga acgtagaaat
      781 caggattcac ctcatggctg cgagtcacat cgagttccca acggacccgc gcgattgctg
      841 agctgatcag tcgatagtcc acctgttggt tgatgggcca cgatgatggg tcgatactcg
      901 ccgattcttc tgtgaagccc gccagatcat ttcgacgaga cgcaatcgct tcagcactcc
      961 agttgggaac ccagccaggc gggcgatcaa tacgtggaat atcatcatag gaaatcggca
     1021 tgtgttgagc gcgccacgtc cagaatttct gcgcgagagt ttgaagagtt gaatagtcgg
     1081 aagatggatt cattgtgtta tccaaggaag atttcaggtt aggaagccgg acccagtcgc
     1141 cgccgatttc gcaaattgta ttgaatgttc tgccgaaaat tcttagcgaa gtcaaactgg
     1201 tattttgatg agacaaccag atcaaactaa tggacgcgct cttccggaac cgcttctggg
     1261 actgaacaag ctgggaaagg gggcagcgga aacttggacg ctccaattat tgacttcgag
     1321 cgcgcccccg ctgaggttca cttgttacag cagctttgcc tcaaaagtcg atttcggtgg
     1381 taacgagttt cgtgtt
//
LOCUS       DATCGC010002250         1940 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_497491, whole genome shotgun sequence.
ACCESSION   DATCGC010002250 DATCGC010000000
VERSION     DATCGC010002250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1940)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1940)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1940
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_497491"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..929)
                     /locus_tag="VIJ87_21375"
     CDS             complement(<1..929)
                     /locus_tag="VIJ87_21375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446965.1"
                     /translation="MRLRIIVSLPLVLLFVTIATSAQSAQTGNPQGTPQPSVNPATTA
                     GPQSTPSASPSPLQSNGTQPASLPAPPKVTRVVEGHLELDDIILIEVDHLKEWMNTAT
                     NDADKLVPYINGRPVIGNYPEAIHSSRNQVQFHLELTPENKDVWNDLLGAPTGTHLPV
                     ALSAGLETGGPFDTVFGPNNKLPLTVISPVYGVVSLLVILFTSIFFLWLVRTTNIIRT
                     PGPPPASGKLRPYNLGRAQMAFWFFLIYVSYLVIWLITNALDTITASLLGLMGISAGT
                     ALSEAMIDSSKDTAQAEQLQERIAEKESLEQSIS"
     gene            1072..1770
                     /locus_tag="VIJ87_21380"
     CDS             1072..1770
                     /locus_tag="VIJ87_21380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446966.1"
                     /translation="MSKTTGLFTNFKDDHLTFFALTYENYEATAECLMDLRKHYPSSR
                     VILRSDGDTNPQLPILAERYRVDFRGEGRLFGIQNGGAIIERMLMLFFEQPTNYLLKI
                     DPDTVIHRRFKYLPVRNGLFGTLQTEEESPSIQGGCMGFTREAVEQILQSEMLRDSRL
                     KEPHNFINDSPYFFRMADRANRCGLASFDWIIPWIASALEIPMYAFDEVNSGWQMAPP
                     NPDQRYAVTHPRAK"
BASE COUNT          456 a          517 c          506 g          461 t
ORIGIN      
        1 gaaatacttt gttcgagaga ctctttttcc gcaatgcgct cctgtagctg ttccgcctgc
       61 gcggtatcct tgctcgaatc gatcatggct tcgctaagag ctgtgccggc gctgatcccc
      121 atcaaaccga gcaatgacgc tgtaattgtg tcgagcgcgt tggtaattaa ccagatcacc
      181 agatacgaca catagatcag aaagaaccaa aaggccatct gcgcgcggcc cagattgtac
      241 ggtcggagtt tgcccgaagc gggtggcggg cccggcgtac ggattatgtt cgtggtccgt
      301 accagccaca gaaaaaagat cgaggtgaac aaaatcacca atagcgagac cacgccgtac
      361 accggtgaga tcacagtcaa tgggagtttg ttgtttgggc cgaagacggt gtcaaagggc
      421 ccgccggttt ccagtccagc actaagagcg acaggcaggt gtgttccggt cggcgcaccc
      481 agcaggtcat tccaaacgtc tttgttttcc ggggtcagtt ccagatgaaa ctgcacctgg
      541 tttctcgacg aatgaatcgc ttccgggtag ttgccgataa cgggccggcc attgatgtac
      601 ggcacgagtt tatcggcatc gtttgtggca gtgttcatcc actccttcag atggtccact
      661 tcaatcagga taatatcgtc cagttccaga tgcccttcca ccaccctcgt gacctttggc
      721 ggtgcgggca aactagccgg ctgagtaccg ttagattgca gaggacttgg agaggcggac
      781 ggcgtcgatt gcggaccagc cgtcgtcgca ggattaaccg atggctgagg cgttccctgt
      841 ggattacccg tctgggcgct ctgcgcggac gtggcgatag tcacaaacaa caaaacaagt
      901 ggcaacgata cgatgattcg tagtctcatt gactctcctg ttgctgggct attgttaaga
      961 tgagcgaggt aagtgatgac gcttgtatcg caaagaccga acactagtca atgattgcgc
     1021 tcactactta agattcgctg gcaactcgac ttttcttcca tgtctgacac gatgtcaaaa
     1081 acgaccggtt tattcaccaa cttcaaggat gatcatctca ccttcttcgc gctgacctac
     1141 gagaactacg aagctaccgc agagtgtctg atggacttgc ggaagcacta tccctctagc
     1201 cgcgttatct tacgttctga tggagatacg aaccctcaac tgccgattct cgccgagcgt
     1261 tacagggtcg attttcgtgg cgagggacga ttgttcggca tccagaatgg tggagcgata
     1321 attgagcgga tgctcatgct cttcttcgaa caaccaacta actacttgtt aaagatcgac
     1381 ccagacaccg tcatccatcg acgcttcaaa tatctgccag ttcgtaacgg attgtttgga
     1441 acactccaaa cggaggagga gtctccttcg attcaaggcg gatgcatggg attcactcgt
     1501 gaggccgtag aacagatctt acagtcggag atgttgcgag acagtcgctt gaaagagcca
     1561 cacaacttta tcaacgattc accgtatttc tttcgaatgg cagaccgcgc caaccgctgt
     1621 ggcctggcaa gctttgactg gatcattccc tggatcgcca gcgcattgga aattcccatg
     1681 tacgcgtttg acgaagtaaa cagcggctgg caaatggcgc cgccaaatcc tgaccagcgt
     1741 tacgctgtga cgcatccgcg ggccaagtag cactcccgtc ccacaatcaa agctgcacca
     1801 gatcgacact agatcgccgc ttgtcgtaat tgatcggatt actgagaatg ccgattgttg
     1861 ttgctcctcg ctcgtcctat gcgtagaaaa ccaattagtt acggctttgc cgcctcccgt
     1921 gcggaaagcc tctggctttc
//
LOCUS       DATCGC010002251         1149 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_396685, whole genome shotgun sequence.
ACCESSION   DATCGC010002251 DATCGC010000000
VERSION     DATCGC010002251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1149
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_396685"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(53..889)
                     /locus_tag="VIJ87_21385"
     CDS             complement(53..889)
                     /locus_tag="VIJ87_21385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446967.1"
                     /translation="MSETTTSLPVAETPKPRFRLDNRYIAPLFITFILLVGHLSYGIL
                     ESYWKTGLAIVTALVVELILGRIFFGKWLNLASAYITGISVGILVRSPAFWPYALCSA
                     ISIMSKYVLRLKGRHLWNPSNFGLSVLFFLAAETMAGLSIQWGNYLAPLLLIWILGSI
                     IIWRAKRFHISATYVISFFVFAFLRSWITGDPWQSEIAPITGPMYQLFVFFMVTDPKT
                     TVKPKWGQILVVFLVAFAEFIFRLMQVVYAPFYALFTVGPAANMIEIWWESRKQQATT
                     VN"
BASE COUNT          319 a          284 c          279 g          267 t
ORIGIN      
        1 cggtttgaat caccactgag acacagagga cacagagcta gcacagagag ttttagttga
       61 ctgtggtggc ttgttgcttc ctcgactccc accagatttc gatcatgttt gcagctggcc
      121 caacggtgaa cagtgcgtag aatggcgcat aaacaacctg cattaaacga aagataaatt
      181 ccgcaaacgc tacgagaaag acaaccagaa tttgtcccca cttcggtttc accgtcgttt
      241 taggatcagt caccatgaag aaaacaaaca gctgatacat cgggcccgtt atcggcgcga
      301 tttcagattg ccatggatcg cctgtgatcc agctccgcag aaacgcgaag acgaaaaacg
      361 aaatgacgta cgtcgcactg atatggaaac gtttcgcacg ccagatgatg atcgaaccga
      421 gtatccagat gagtaacaaa ggcgcgaggt agtttcccca ctgaatactc aagccagcca
      481 tcgtctcggc cgccaggaag aacaatactg aaagtccaaa gtttgaaggg ttccaaaggt
      541 gtcgaccctt caatcgcagc acatacttcg acatgatcga aatcgcactg cacaacgcat
      601 aaggccagaa ggctggtgaa cgaaccagga ttcccacgct gatgccggtg atgtaggcgc
      661 tcgcaaggtt cagccactta ccaaaaaaga tgcgaccgag aattaactca acaaccaaag
      721 ccgtgactat tgcgagtccg gtcttccaat agctttcgag aattccgtag gaaaggtgac
      781 caacgagaag gatgaacgtg atgaagagcg gcgcgatgta acgattgtcg agacgaaatc
      841 tcggcttagg tgtttctgcc actggcaatg aagtcgttgt ttcgctcatg gtttccaaat
      901 gtccgatatg catgtccgat atgctttaga ggctctttca gtttgtggat acttcaagtc
      961 cagcctattt ggggccagca aacccagtgg cgaacgttgt cccagagcct acactgtctc
     1021 gcagaaggtt ggacttgaac acatccacaa actaccgttt gtggattcaa ttcctttccg
     1081 agcgactgtt gtataggttg gtcttgaatc atctccaaac tgccgtttgg cggattgttc
     1141 ttcctttca
//
LOCUS       DATCGC010002252         1425 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_99793, whole genome shotgun sequence.
ACCESSION   DATCGC010002252 DATCGC010000000
VERSION     DATCGC010002252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1425)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1425)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1425
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99793"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1359
                     /locus_tag="VIJ87_21390"
     CDS             <1..1359
                     /locus_tag="VIJ87_21390"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HEY5446968.1"
                     /translation="QEMALTIAEPVLGGSNNQEVVAAVVAIVSFQEVFHAVQQPTSKS
                     ERELLDAGLPIVFVVDQNGRAVAHPEASVAFSEKSMLDLKVVQDWMESGDQVQSALAP
                     FSANREGRQVEMLGSYATAELDKNSRLGVIAVQDEAAALASVADMRWQTMWISLVAGV
                     LTILIGIFFAKKLTHPVRELAGGAHRIASGDFSQRIDVTSRTELGDLGNSFNVMTDQV
                     ERFISDLQKSSEENRQLFIGTVKGLAAAIDGKDPYTRGHSERVSRFSVAIAQRMGIND
                     DEVEKIRISALLHDVGKIGIDDSVLKKPAALTDEEYELMKKHPQKGYKIMSQIPAMKE
                     FLPGMYMHHEMVDGKGYPQGLKGDEIPLMGKIVAVADTFDAMTTDRPYQKAMKFEDAV
                     ARIESFVNTRYDEVVVAAFTAACREGQIRPGSVRLKRPVATGLKPELLNTLQEAERPS
                     VS"
BASE COUNT          353 a          337 c          417 g          318 t
ORIGIN      
        1 caggaaatgg cgctgactat agccgagccg gttcttgggg gaagcaataa ccaggaagtt
       61 gtcgccgccg ttgttgcgat cgtttcattt caagaggtct tccacgcggt tcaacaacca
      121 acgtccaaga gtgaacgcga acttttagac gccggcttac ccatcgtgtt tgtcgttgat
      181 cagaacgggc gggcggttgc acaccctgag gcgagcgtcg cgttctccga gaaatcgatg
      241 ctcgacctaa aggtggtgca ggattggatg gagtcaggcg accaggttca gtcggccctg
      301 gcaccctttt cggcgaaccg tgagggacgt caggtcgaga tgcttggttc ctacgcaact
      361 gcggaacttg ataagaactc tcggctcgga gtaattgcag ttcaggacga ggcggcagca
      421 ttggcttcag ttgccgacat gcgttggcaa acgatgtgga taagtctagt ggcaggcgtg
      481 ttgacgattt tgattggaat cttttttgcc aagaagttga cacatccagt tcgcgaattg
      541 gccgggggcg cgcaccgaat cgcttcaggc gacttttcac agcgcattga cgtaaccagt
      601 cgtaccgagc tgggtgatct cgggaattcc ttcaacgtaa tgaccgatca agtggagcgc
      661 ttcattagcg atttgcaaaa gtcgtcagaa gaaaaccggc agttgtttat tggcacagtt
      721 aagggattgg cggcggccat cgacggaaaa gatccgtaca ctcgtggtca ctccgaacgt
      781 gtctctcgct tctcagtggc aatagctcaa cgcatgggaa tcaacgatga tgaggtagag
      841 aagattcgta taagcgcttt gttgcacgat gtcggcaaga ttggtatcga cgacagtgtc
      901 ttgaagaagc cggcagctct gactgacgaa gagtacgagt tgatgaagaa gcacccgcag
      961 aagggctaca agatcatgtc gcagattccc gcgatgaaag aattcctgcc gggaatgtac
     1021 atgcatcacg agatggtaga tggtaagggt tatccacaag gtctgaaggg cgacgaaata
     1081 cctctcatgg gcaagattgt ggcggtggcc gacacattcg acgcaatgac aacagatcga
     1141 ccttaccaaa aagccatgaa atttgaagat gcggtcgcga gaatcgaaag cttcgtcaac
     1201 acacgttacg atgaggtagt tgttgccgcg ttcaccgcag cgtgtcggga aggtcagatt
     1261 aggccgggct cagtccggtt aaaacgacct gttgccacag gactcaagcc cgagttattg
     1321 aacacccttc aggaagccga acgcccctca gttagttaag taagagacaa accacttcgc
     1381 gagtcgcagc cgcgtccttt ttgagagggc gcggctgttg tgctt
//
LOCUS       DATCGC010002253         2222 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_497579, whole genome shotgun sequence.
ACCESSION   DATCGC010002253 DATCGC010000000
VERSION     DATCGC010002253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2222)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2222)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2222
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_497579"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..272)
                     /locus_tag="VIJ87_21395"
     CDS             complement(<1..272)
                     /locus_tag="VIJ87_21395"
                     /inference="COORDINATES: protein motif:HMM:TIGR00180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HEY5446969.1"
                     /translation="MNRKALGRGLGALLGSDQTVSIGQEAFEVNVDLIDPGAEQPRTR
                     FDEAALERLTVSIREHGVVQPVLVRRQGSRYELIAGERRWRAAQKAG"
     gene            complement(211..1038)
                     /locus_tag="VIJ87_21400"
     CDS             complement(211..1038)
                     /locus_tag="VIJ87_21400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016293132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY5446970.1"
                     /translation="MAKTIAVANQKGGVGKTTTAVNLAAIIASSGFRVLLVDADPQGN
                     ATSGVGIQRGSFRRSLYHGLVMGEPLSELILKTDIESLFVVPANKDLAGAEIELVDID
                     RREARLKDALAVIESDFDYFIIDCPPSLGLLTLNALTAAKSLLVPIQCEYYALEGVTE
                     LFDTLARIRRVHNPSLIIEGLLLTMYDERTNLSGAVAADLRDFYGQQVFTAVIPRNVR
                     LAEAPSYGKPIITYDPHSKGAEAYSQLAREIISREIVYESKSLGSGSGSPSGVGSNG"
     gene            complement(1195..>2222)
                     /locus_tag="VIJ87_21405"
     CDS             complement(1195..>2222)
                     /locus_tag="VIJ87_21405"
                     /inference="COORDINATES: protein motif:HMM:NF013314.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY5446971.1"
                     /translation="FAEKSRHQLFLEPEGHDTNEVYLNGFSTSLPAELQQELVRMVTG
                     LEEARVIRPGYAIEYDFVDPRELGPDLQTRRVSGLYHAGQINGTTGYEEAACQGLIAG
                     INAALSTQGRATLRLRRDEAYTGVLIEDLITQGVDEPYRIFTSRAEYRLALRYDNADS
                     RLEGYGREIGLIGDTDWERFNARQCRIAQLRQALEQTRFKRSDPVHAALSAQLNADLG
                     DSISLAQLAKRPGVRSDIVKELLPGEMKPGVVDSELDTAMADLLYAGYLNAHKLTVER
                     LHQHDNLKISGQLIFRGLSGLSNEVVERLERAKPRTFGEARRIPGLTPAALSTLLVHL
                     SAQTQAA"
BASE COUNT          529 a          644 c          541 g          508 t
ORIGIN      
        1 cctgccttct gagcagcacg ccatcttcgc tctccagcaa tcaactcgta tcgacttccc
       61 tgtctgcgca cgagaacggg ctgaactact ccgtgctccc ttatcgaaac cgtcagacgc
      121 tcaagtgcgg cctcgtcaaa ccgagtcctc ggttgctcgg ctccgggatc aattagatcg
      181 acattaacct caaacgcttc ctgtccgata ctaaccgttt gatccgaccc cagaagggct
      241 cccagacccc gacccaaggc ttttcgattc atagacaatc tccctggaaa taatctctcg
      301 agctaactgc gaataggcct cggcgccttt tgagtgagga tcgtaggtga ttattggctt
      361 tccataactg ggtgcctcag ccaatcttac gttccgagga atcaccgctg taaaaacctg
      421 ttgtccgtag aaatccctaa gatctgccgc gactgcccct gataggtttg tccgctcgtc
      481 gtacatcgtc aaaagcaggc cttcaattat taacgacgga ttatgaactc ttcgaattcg
      541 agccaaagta tcaaacaact ccgtgacgcc ctcgagcgcg tagtattcgc actgaattgg
      601 gaccaggagc gacttggcgg cggtgagcgc gttaagagtt aggagaccca gcgacggagg
      661 gcagtcaata atgaaataat caaagtccga ctcaataaca gctagggcat ccttgagcct
      721 ggcttctcga cggtcaatat caaccaattc gatttcggca ccagccaaat ccttattggc
      781 ggggacaaca aacaaggact ctatatcggt ctttagaatt aactcgctca agggctcgcc
      841 catgacgagt ccgtgataaa gactgcggcg aaaactcccg cgctgaatcc caacaccgga
      901 cgttgcgttt ccctgaggat cggcgtctac caaaaggacg cgaaagcccg aactcgcaat
      961 tattgccgca agattaacag cggttgttgt tttaccaaca ccgcccttct gatttgctac
     1021 agctatagtc ttagccatac aggcgagcaa ggcctcactg gtcaggttgg cggctaaact
     1081 aacacaagcc gaccagtcgg gccactgcga tactgtattt tggagattta gagggtcaaa
     1141 tgtttcacgt gtcccgctct acaacgtcgg acccgtcatg ggacacgtga aacattacgc
     1201 ggcttgcgtc tgtgctgaaa gatgcaccag caaggtcgag agtgcggctg gcgtgaggcc
     1261 gggtattcgc cgggcttctc caaaggtcct gggtttcgcc cgttcgaggc gctccaccac
     1321 ctcgttagac aaaccgctga gcccccgaaa aataagctgt cctgaaatct taagattgtc
     1381 gtgctgatgc aaccgctcga cggtcaactt atgagcgtta agatagccgg cataaagcaa
     1441 gtcagccatc gcagtgtcga gttctgaatc aaccacaccg ggcttcatct ccccgggcaa
     1501 tagttccttc actatgtcgg accgaacgcc aggtcgtttt gcgagttgtg ccagggaaat
     1561 cgaatcgcct aaatcggcat tcaattgtgc gcttagggcc gcatgaacag gatccgaacg
     1621 cttgaaacgg gtttgctcca aggcttggcg aagctgcgct atccgacact gccgcgcatt
     1681 gaaccgctcc cagtcggtat ctccaatcaa cccgatctcg cgaccgtaac cctcaagccg
     1741 cgagtcagcg ttgtcatagc ggagcgctaa gcgatactca gcgcgcgagg tgaagattct
     1801 gtatggctca tccaccccct gagtaatcaa atcttcaatt aaaactccgg tgtaagcctc
     1861 gtccctgcga agccggagcg tcgctctgcc ttgtgtagac aaggccgcgt tgatgccggc
     1921 aattagcccc tggcaagcgg cctcctcgta gccggttgtt ccgttaatct gacctgcgtg
     1981 gtacaaccct gatacgcgtc gtgtttgaag atcgggcccc aactctctcg gatccacaaa
     2041 gtcatactcg atggcgtaac ccggccgaat aactctcgct tcctctaggc cggttaccat
     2101 tctcactagc tcctgctgga gctcagcggg caatgaggtc gaaaagccat tcaagtaaac
     2161 ttcatttgta tcgtgccctt caggctccaa aaacaactgg tgcctactct tttctgcaaa
     2221 ct
//
LOCUS       DATCGC010002254         1588 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_265122, whole genome shotgun sequence.
ACCESSION   DATCGC010002254 DATCGC010000000
VERSION     DATCGC010002254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1588)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1588
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265122"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..980
                     /locus_tag="VIJ87_21410"
     CDS             <1..980
                     /locus_tag="VIJ87_21410"
                     /inference="COORDINATES: protein motif:HMM:NF012652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GspE/PulE family protein"
                     /protein_id="HEY5446972.1"
                     /translation="PQDGRFRVRYKGRNVDFRVSIMPTIHGEDAVIRILDKEQINEEF
                     RNLNLNVVGFAEEDLRKFRRYIAEPYGMVLVTGPTGSGKTTTLYAALNEIRNEEDKIV
                     TIEDPVEYQLHGITQIPVNEKKGLTFDRGLRSILRHDPDKIMVGEIRDTETAQIAIQS
                     ALTGHLVFTTVHANNVIDVIGRFLNMGVEPYNFVSSLNCVLAQRLIRMLCPYCKRQYQ
                     PTDTELAESGLLPDQYRQHPFYMNVGCDACNHTGYRGRTAIHELLDLSDNIREMIVER
                     RPGSEVRRAAEAEGLKSLRESALQKIFTGTSTLHEINRVTFVEELTVST"
     gene            1160..>1588
                     /locus_tag="VIJ87_21415"
     CDS             1160..>1588
                     /locus_tag="VIJ87_21415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446973.1"
                     /translation="MRTRTIISLILAVSLLSLPITAFAKKGEKNFRRGLELENAQQWD
                     KAAQEFTLAVAADPANMEYQMHFRRASFNASQTFMQQGRSLAEQGDFVGGYNAFRQAY
                     GYDPVNELAVSEMERMLRLQGVKEGRVNPNGTKIGESQEGV"
BASE COUNT          396 a          382 c          432 g          378 t
ORIGIN      
        1 ttccccagga tggtcgtttc cgcgtacggt ataaaggacg caacgttgat tttcgtgtct
       61 cgatcatgcc gacgattcac ggtgaagatg cagtcatccg tattctcgac aaagagcaga
      121 tcaatgaaga gtttcgcaac ctgaatctta atgtggtcgg cttcgcggag gaggacctga
      181 gaaagttccg acgctatatc gccgagccgt atggcatggt gttggtgact ggtcctaccg
      241 gctccggcaa aacgacaacg ctctatgcgg ctctcaacga gataagaaac gaagaagaca
      301 agatcgttac aatcgaggac ccggtggagt atcaactcca cggcattact cagattcccg
      361 taaatgagaa gaagggtcta acttttgatc ggggtcttcg gtcgatcttg cgacacgatc
      421 cggacaagat aatggtcggt gagattcgcg acaccgagac ggcccagatt gcgattcagt
      481 cagcgctcac gggccacctc gtttttacga ccgttcacgc gaacaacgtc attgacgtca
      541 tcggacgatt tctgaacatg ggggtcgagc cttacaactt tgtttcgtcg ttgaactgcg
      601 ttcttgctca acgactgatt cgaatgctct gtccttactg taaacggcag taccagccaa
      661 ccgatacgga actggcggaa tctggtttgt tgccggatca gtatcgacag catccgttct
      721 atatgaacgt aggttgtgac gcctgcaatc acacgggcta ccgcggacgc acagctattc
      781 acgagcttct cgacttgtcc gacaatattc gggaaatgat cgttgagcga cgtccaggtt
      841 ctgaagtccg gcgtgccgcg gaagcggaag ggctgaagag tctgcgcgag tcagctcttc
      901 agaaaatctt tactggaacg tcaactttgc acgaaatcaa tcgggtaacg tttgttgaag
      961 agttaacggt ttcgacctag ttcggagcac ttatagcggt ttaggactct ggtaaaaacc
     1021 gtctgtttag gggaaccgaa aaatcttttc agcgtgtaag gaaatcaggt gcgcggatct
     1081 tgcaacttat gcgctgcggc ggcattattg ctccgctgaa tctatccacc tcccgactgc
     1141 aacgctcatg agaaacacta tgcgaactcg aacaattatc tccctaattc tggccgtcag
     1201 tttattgtcg ctgccaatca ctgccttcgc taaaaaaggc gagaagaatt ttaggcgcgg
     1261 acttgagctg gagaacgctc aacagtggga caaagcggcc caggagttta cgctggctgt
     1321 tgcggcagac cctgcaaaca tggagtacca gatgcatttc cgtcgcgcga gtttcaacgc
     1381 gtcgcagacg ttcatgcagc agggacgatc gcttgcggag cagggagatt ttgttggcgg
     1441 gtataacgct tttcgccaag cctacgggta cgatccggtt aacgaattgg ctgtttcgga
     1501 aatggaacgc atgctccgtt tacaaggtgt gaaagagggc agggttaatc caaacggaac
     1561 aaagattggc gaatcgcaag aaggtgtt
//
LOCUS       DATCGC010002255         1561 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_163711, whole genome shotgun sequence.
ACCESSION   DATCGC010002255 DATCGC010000000
VERSION     DATCGC010002255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1561)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1561)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1561
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163711"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..564
                     /locus_tag="VIJ87_21420"
     CDS             <1..564
                     /locus_tag="VIJ87_21420"
                     /inference="COORDINATES: protein motif:HMM:NF013384.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-eliminating lyase-related protein"
                     /protein_id="HEY5446974.1"
                     /translation="GGLAGRDLEAIAVGLEEVLHEDYLQYRFASIRYLGEHISRAGVP
                     IVQPPGGHAIYIDARAMLPHIPPLQYPGQSLAIELYREAGIRSCEIGSVMHAEKQSDS
                     GEEIPSAMDLVRLAIPHRVYTQSHIDYVVEAILRVHERRDSIGGYQITSQPKFLRHFT
                     AQFEPLDELTYINRPGSNHGKQVFLHD"
     gene            536..976
                     /locus_tag="VIJ87_21425"
     CDS             536..976
                     /locus_tag="VIJ87_21425"
                     /inference="COORDINATES: protein motif:HMM:NF014608.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEY5446975.1"
                     /translation="MENKYFYTTEVEWTGERAGDLTAPVLPDLKVDAPPEFKGHDGVW
                     TPEHLFVASINSCFMTTFLAIAENSKLDFVSFTAGAKGKLEKVEGQGFIMTEVVLRPK
                     LRISHARDAERAGRILEKAEKNCLISNSIKTETKLEPEISFAGE"
     gene            1333..>1561
                     /locus_tag="VIJ87_21430"
     CDS             1333..>1561
                     /locus_tag="VIJ87_21430"
                     /inference="COORDINATES: protein motif:HMM:NF015581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF302 domain-containing protein"
                     /protein_id="HEY5446976.1"
                     /translation="MSAQQLQHSKYGFSKTVDLPYEEAVERVRTALKAEGFGVLCEID
                     IKDKLKEKLGVDFRNYVILGACNPHLAFKTLQ"
BASE COUNT          394 a          395 c          425 g          347 t
ORIGIN      
        1 ggcggcttgg ccgggcgtga tctcgaggcc attgctgttg gtctcgaaga ggtgttgcat
       61 gaagattatt tgcagtaccg ctttgcttct attcgttatc tcggcgaaca catctcgcgg
      121 gccggtgtgc ccatagtgca accgcccggc ggccacgcca tctacataga tgctagagcg
      181 atgctgccac atatcccacc gctccaatat ccgggtcagt ctctggcaat tgaactctac
      241 cgggaagcgg gtattcgctc atgtgagatc ggttcagtga tgcacgcgga gaaacagtcc
      301 gacagtggcg aagagatacc ctcagcaatg gacctggtgc gtctggcgat tccccatcga
      361 gtctacacgc agagtcacat tgattatgtc gtagaagcaa ttcttcgggt ccacgaacgt
      421 cgtgactcga tcggcggtta ccagatcacc agtcaaccaa aattcctgcg tcattttacg
      481 gcgcaatttg agccgcttga cgagctaacc tacataaaca gacctgggag caatcatgga
      541 aaacaagtat ttctacacga ctgaagttga atggaccggt gaacgcgcag gagacttgac
      601 cgcaccagtg ttgccggatc taaaagtcga cgcgccgccc gagttcaaag gtcatgatgg
      661 tgtctggacg ccggagcatc ttttcgtcgc ctcgatcaac tcatgtttca tgaccacgtt
      721 tctggcaatc gctgagaatt cgaaacttga tttcgtcagc tttactgcgg gtgcgaaagg
      781 aaagttagag aaggtggagg gccagggctt catcatgacc gaggtcgtac tacggcccaa
      841 actccgtatt agccacgcgc gcgatgctga acgcgccggt cgcattttgg agaaggcaga
      901 aaagaactgt ctgatctcca actccatcaa aacggagaca aaacttgagc ctgagatcag
      961 cttcgccggt gagtgaatcc tggcgacaat caacggcccc ttgacaaagc caaccggatg
     1021 atttgatggc tcaggcaaca agggtcagga gttgagaaca atgagtgaaa ggctatggcc
     1081 ggtattattc ctcgcggctt acattgtgct gatgcgctgg gtgcttccgc gtcttggtgt
     1141 tccgacttga atggcaaact cgtgccgcgt cgagtctcga ccgggagcac taaacgatga
     1201 cacgcacact gcggcagttg gagacgcaac aagttgacgt gatttagaaa ttaggcgtaa
     1261 ccaacactaa caagccggct acagcgaccc tgccctttgc gatttggttt acagtggaaa
     1321 agggtaaaga aaatgagtgc tcagcaacta caacattcaa aatacggatt cagcaagaca
     1381 gttgatcttc cctacgaaga ggctgtcgaa agggtgcgga ccgcgctcaa agccgaaggc
     1441 ttcggtgtgc tttgtgagat tgacatcaaa gacaaactga aagagaagct cggtgtggat
     1501 ttccgcaact atgtgatcct gggcgcgtgc aatccgcatc tcgcattcaa gactctgcag
     1561 c
//
LOCUS       DATCGC010002256         1065 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_497687, whole genome shotgun sequence.
ACCESSION   DATCGC010002256 DATCGC010000000
VERSION     DATCGC010002256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1065)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1065)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1065
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_497687"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(145..>1065)
                     /locus_tag="VIJ87_21435"
     CDS             complement(145..>1065)
                     /locus_tag="VIJ87_21435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446977.1"
                     /translation="GFMLASLSVQGTQKAATAVAVVVPILAFGFPMVDTMMTMGRRLV
                     SRRPIFEGDNEHIHHMLLARGWSQRKAALVLYGVCASFGLAAVIFPATGSKTTGVVLF
                     VISVAVIIAVGHLRYHEVDEIRAGVRRTVGDRRLRVAKNIQVRRAARALAKASDLHEV
                     FDAIRHMLEFGEFTFANAQVGQAGYAEINEKAFAASQHRHPRQELEMRNGRVFWSWLG
                     EGGEPDDRLRARSSWCFRMPLVKDGIDWGWLNFYHNLEGESLLVDTNYLCNLFLKEFT
                     EAVARIMKAHEAPSLAREISMEVIADEIGS"
BASE COUNT          263 a          312 c          249 g          241 t
ORIGIN      
        1 gctctacagt tccgtacgga atggcgcttc cggccaacag caccaacaga gtcacaaaga
       61 cgaccctgtt aagaagtcga gcgatcctga tgctcgtggt tctttcagca cccatcgcga
      121 agtcggctgt tatcgagtgc gacatcagct gccgatctcg tctgcgataa cttccatcga
      181 tatctctctt gcaagtgagg gcgcttcatg agccttcata attctggcga ctgcctcagt
      241 gaactctttg aggaacaagt tgcacagata gttcgtgtcg accaacaacg attcaccctc
      301 gagattgtga tagaaattca accagcccca gtctattccg tccttaacca atggcattcg
      361 aaaacaccat gacgaccgag cccgaagcct gtcgtcgggt tccccgccct ctcctagcca
      421 ggaccaaaag acacgtccgt ttcgcatttc cagttcttgt cttggatggc gatgctggct
      481 ggcggcaaag gctttttcgt ttatctccgc atatccggcc tggccaactt gagcgttcgc
      541 aaaagtaaat tccccaaact ccagcatgtg acgaatagcg tcaaagacct catgaagatc
      601 agaagccttg gctaacgctc gcgcagcgcg tcgcacctga atgttcttcg ctactctgag
      661 tcgtcgatcc ccgaccgtgc gtcttactcc cgctcggatt tcatcaacct cgtgatagcg
      721 caaatgtccg acagcaataa ttactgcaac ggaaattaca aacagaacaa cgcccgttgt
      781 cttcgaaccc gtcgccggga aaattactgc ggccaaacca aaggaagcac aaacaccgta
      841 gagcacaagt gccgctttgc gttgtgacca accgcgtgcc agcagcatgt gatggatgtg
      901 ctcattgtcg ccttcaaaaa tgggacgacg actcaccagt cttcttccca tggtcatcat
      961 ggtgtcgacc attggaaatc cgaaagcgag aattggcacg accacggcta cggcggtcgc
     1021 cgccttctga gtgccttgta ctgataacga ggcgagcata aaacc
//
LOCUS       DATCGC010002257         1351 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_396893, whole genome shotgun sequence.
ACCESSION   DATCGC010002257 DATCGC010000000
VERSION     DATCGC010002257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1351)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1351)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1351
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_396893"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..184)
                     /locus_tag="VIJ87_21440"
     CDS             complement(<1..184)
                     /locus_tag="VIJ87_21440"
                     /inference="COORDINATES: protein motif:HMM:NF015853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis protein CcmH"
                     /protein_id="HEY5446978.1"
                     /translation="MKQIVYAILVLLIVGHGVPGKDAGPVSGEDPAVEQRLANLSKEL
                     RCLVCQNETLADSQAGL"
     gene            complement(181..717)
                     /locus_tag="VIJ87_21445"
     CDS             complement(181..717)
                     /locus_tag="VIJ87_21445"
                     /inference="COORDINATES: protein motif:HMM:TIGR00385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbE family thiol:disulfide interchange protein"
                     /protein_id="HEY5446979.1"
                     /translation="MIKYLIPLVLFLGLVIFLAIGLNRDPHEVPSPLINKPAPAFTLP
                     QLKDPSKTFSAAEMRGKVWILNVWASWCVTCRDEHPLLLEYAKTNAVPIYGLNYKDQR
                     EDAIAWLGELGDPYVLSAADVDGRIAIDYGVYGAPETYLIDQSGTIRFKQIGPVTPDV
                     WTNQILPLVQELNRQGNR"
     gene            complement(723..>1351)
                     /locus_tag="VIJ87_21450"
     CDS             complement(723..>1351)
                     /locus_tag="VIJ87_21450"
                     /inference="COORDINATES: protein motif:HMM:NF027651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome c-type biogenesis CcmF C-terminal
                     domain-containing protein"
                     /protein_id="HEY5446980.1"
                     /translation="LWERTRITSGQLTTFQKLRAQTRSYYGMQVAHLGVAAFIVGVTL
                     VTGYQSEQDVKMETGDTVHAGGYEFKFNGVSQISGPNYQAARAEIIVSRNGVETQRMY
                     PEKRNYTASGNVMTETAIDTGLFRDLYVSLGEPVQNGAWSVRVYYKPFVDWIWGGAVL
                     MAIGGGLALSDRRYALAARKQREAKAASDKGAALPASVAASVAIEAEQ"
BASE COUNT          308 a          373 c          338 g          332 t
ORIGIN      
        1 cgagcccggc ttgcgagtcc gccagggttt cattctgaca aacaagacag cgcagctctt
       61 ttgaaagatt cgctaaccgt tgttcgactg cggggtcttc accagacacg ggccccgcat
      121 ctttgccggg gacgccatgg cccactatca gcaacacaag gattgcgtag acgatttgtt
      181 tcatcgattg ccctgacgat ttagctcttg tactaacgga aggatttggt ttgtccatac
      241 gtcaggtgta acgggtccga tctgcttgaa acgaatagtt ccggattggt cgatgagata
      301 ggtttcgggt gcgccataga ctccgtagtc aatcgcaatc cgcccgtcca catcagcagc
      361 actcagaaca taagggtcac cgagttcacc aagccaagcg atggcatctt cacgttgatc
      421 tttgtaattg agaccgtaga tgggaactgc gtttgttttc gcatattcga gaagcagcgg
      481 atgctcgtca cgacaagtga cgcaccacga ggcccacaca ttcaggatcc aaaccttccc
      541 gcgcatttcg gcggctgaaa atgttttgct cggatcttta agttgaggaa gagtaaaagc
      601 cggtgccggt ttgttgatca gcggagatgg aacctcatgt ggatcgcggt tcaacccaat
      661 cgccaggaat atgaccaagc cgagaaacag aaccagtgga atcaagtact taatcatctc
      721 agctattgtt cggcttcaat cgcgacggaa gctgccactg aggctggcag tgccgcaccc
      781 ttgtcgctcg cggcttttgc ttccctttgt tttctcgctg ccagtgcata acgtcgatca
      841 ctcaatgcca atccgccgcc gattgccatc aggaccgcgc caccccagat ccagtcaacg
      901 aatggtttgt aatagacgcg tacgctccag gctccattct gcactggttc gccgagcgaa
      961 acgtagaggt ccctaaacag acctgtatca atcgccgtct cagtcatgac gttgccactc
     1021 gcggtgtagt ttcgcttttc cggatacatg cgctgtgtct caacaccatt ccgactgaca
     1081 atgatttccg ctcgggctgc ttgatagttt ggtccggaaa tttggctgac gccattgaat
     1141 ttgaactcgt aaccgccagc gtgaacggtg tcaccagttt ccatcttcac gtcctgctcc
     1201 gactggtaac cagtgactag agtcacaccc acgatgaatg ccgcgacacc caggtgagct
     1261 acctgcatgc cgtagtagct cctggtttga gctcgcagct tttgaaacgt cgtaagttga
     1321 cctgacgtaa tacgcgttcg ttcccaaaga t
//
LOCUS       DATCGC010002258         1163 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_265203, whole genome shotgun sequence.
ACCESSION   DATCGC010002258 DATCGC010000000
VERSION     DATCGC010002258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1163)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1163)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1163
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265203"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..675
                     /locus_tag="VIJ87_21455"
     CDS             <1..675
                     /locus_tag="VIJ87_21455"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024967.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY5446981.1"
                     /translation="LHPSIELKNLTLRVKTRLRRIPGVRALARQLRLIRNEAGPRDFL
                     LKMLPTGSVGAEIGVHKGEFSEQILRSVKPRELHLIDPWKYESSEEYSDAWYGGKAQD
                     GQAEMDERYEQVLARFRRHLRSGRVFVHRGSSSGVCDNFSDGSFDWVYIDGNHLYEFV
                     KNDLELYYHKVRSGGYIAGDDYDYKIGGWWESGVKLAVDEFVKNRAVEVVDIRDRQFI
                     LRKPGS"
BASE COUNT          299 a          284 c          325 g          255 t
ORIGIN      
        1 ttgcatccct cgattgagct caaaaatctg actctacgcg ttaagacccg acttcggaga
       61 atccccggcg tccgcgcgct tgccagacag ttacggctaa ttcggaatga ggctggtccg
      121 cgtgactttc tattgaaaat gcttccaacc ggttccgtcg gagcggaaat tggtgttcat
      181 aaaggagagt tctcggagca gattttacgt tctgtcaaac cgagagaact gcatctaatc
      241 gacccctgga agtatgagtc gtcagaggaa tacagcgacg catggtacgg aggtaaggcg
      301 caagatggtc aggcggagat ggacgaaaga tacgagcaag tgcttgctcg tttccgtcgt
      361 cacttaagaa gcggtagggt cttcgtgcac cgcggttctt ccagcggcgt gtgcgataac
      421 ttttcggacg gttcgttcga ttgggtgtac attgacggga atcatctcta cgagttcgtt
      481 aagaacgatc tagaattata ctatcacaag gttagaagcg gtggatatat agctggcgac
      541 gactacgact ataagatcgg aggttggtgg gagagcggcg tcaaattggc cgtcgacgag
      601 ttcgtaaaga atagggcggt tgaagtagtt gatatacgcg accgtcaatt tatattgagg
      661 aagccaggta gctagctcga actaacaagg taatcgagag cacaagcgta gcgcaaggag
      721 atcaaagccc tcactgcaag tctgaaagag caagcaacgc aaatccaaaa agtgagcgac
      781 caagtcgcgc tcagcaaacc tgcaccacag ttagtcgcca accctaaaat ggcgtggtcg
      841 cctatagctg ttgctcccac gttgggacag tcggtgcttg ttgtcgcccc cgaatcgcag
      901 ctcgtttcca gtacactttt cggagcaagc cgaatgcgcg ttcctggcga tcaagcaatt
      961 aattatgcgc agaaccgcgc cagctttcgc tcaggcgagg tccggatttt ggattcaagc
     1021 ggcaaggtcg aacgcaccat tccgttcagc gaagcggatc gaaaactgta agcggtcgca
     1081 tcaggccagc ggccaacctc aatctgcggc taccggcaga gcaaacgatc cgagctaggt
     1141 agatgatccc gtccgtccgt tca
//
LOCUS       DATCGC010002259         1299 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_265282, whole genome shotgun sequence.
ACCESSION   DATCGC010002259 DATCGC010000000
VERSION     DATCGC010002259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1299)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1299)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1299
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265282"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..668)
                     /locus_tag="VIJ87_21460"
     CDS             complement(<1..668)
                     /locus_tag="VIJ87_21460"
                     /inference="COORDINATES: protein motif:HMM:NF013125.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lamin tail domain-containing protein"
                     /protein_id="HEY5446982.1"
                     /translation="MRIMSPLYSSRSFRVSVVFAIVVFAILASVQFFNYSFRVQAVST
                     NVVISEFRVRGPNGGNDEFIELYNLSGAPVAIGGWNIRGSNNAAGVSIRATITAGTTI
                     QPGCHYLLTNSAAGGYSGAVPGNQTYTVGITDDGGIALTLSDGTIVDAVGMSTGSAYK
                     EGTVLANLGTSNLNRGYERKPGGAAGSGTDTDNNSADFQLITPSDPQNSTTGCVSPSP
                     SPSPS"
     gene            919..>1299
                     /locus_tag="VIJ87_21465"
     CDS             919..>1299
                     /locus_tag="VIJ87_21465"
                     /inference="COORDINATES: protein motif:HMM:NF014766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446983.1"
                     /translation="MIIQSIELREIRLPLIHFFETSFGRTTERRIVLARVTDTDGAEG
                     WGECTAGEGPFYSDEWTDSCWSTLYEFLAPMVVGKQIENAAGAFAIMKQVRGHRMAKA
                     TLENACWDLEAKKLGVPLWKHLGGT"
BASE COUNT          325 a          313 c          353 g          308 t
ORIGIN      
        1 gaaggtgatg gcgaaggact cggcgacacg caaccggttg tcgaattctg cggatcgctc
       61 ggagtgatga gttggaaatc tgctgagttg ttgtctgtgt cagtaccgct tccggctgca
      121 ccaccaggtt tacgctcata accccgattc agatttgaag tgccgagatt agcgagcacg
      181 gtgccttcct tgtaagcaga cccagtgctc attccgaccg cgtctacaat cgtaccgtcg
      241 gacagagtca gtgcaatgcc accatcatct gtaatgccaa ctgtgtatgt ttgattccct
      301 ggaacggcgc cgctgtaccc gcccgcggcc gagttggtga gaaggtagtg acatccaggt
      361 tgaatggttg taccggcggt tatcgtcgcc ctgattgaca ctcccgccgc gttattcgag
      421 cctctgatgt tccaaccgcc gatggcaact ggggccccgg aaagattgta caattcgata
      481 aattcgtcgt ttccaccgtt cggtccgcgc acgcggaatt cgctgatgac aacattagtg
      541 gaaactgcct ggactcgaaa cgagtagttg aaaaactgca cagacgcgag gatcgcgaac
      601 acgacgattg caaatacgac tgacacacgg aacgaccgcg acgagtaaag gggactcata
      661 atgcgcatag ttaatcttcc tctaagaaac taaagtttta taacggccgc acttttattg
      721 agaggaatac cggtgtgaaa gtccttacga ggccggtagg aaaattgtga atgccttgta
      781 ccaattcccg aatacagggt caagccaaga agcagctttc aattcatatt tctctggttg
      841 ttaacacaac tttcaaggca agctgacaac agtctgtatg caaggcataa tgaggtcacg
      901 gaggaacaac ctgctacctt gattattcag tcaattgaac tgcgcgaaat tcgcctgcca
      961 ctcattcact ttttcgaaac aagctttggc cgtaccactg aacgacgcat cgttttagct
     1021 cgtgtaactg acacagatgg cgccgagggc tggggagaat gcacagctgg agagggtccg
     1081 ttttacagtg atgaatggac ggacagttgt tggtcaacgc tgtatgagtt tttagccccg
     1141 atggttgtgg gcaaacagat cgagaacgcc gctggtgctt ttgccatcat gaaacaggta
     1201 cgcggacatc gcatggcgaa ggcgacgctt gagaatgcgt gttgggatct cgaggcgaaa
     1261 aagttgggtg tcccgttgtg gaaacattta ggcggcact
//
LOCUS       DATCGC010002260         1126 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_396993, whole genome shotgun sequence.
ACCESSION   DATCGC010002260 DATCGC010000000
VERSION     DATCGC010002260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1126)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1126
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_396993"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1126)
                     /locus_tag="VIJ87_21470"
     CDS             complement(<1..>1126)
                     /locus_tag="VIJ87_21470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446984.1"
                     /translation="DQFVAKYKGTQDVPIFKSKLVVPVIYINNLPDFLKEGSPFLRYL
                     RETKVPFAVLINYGAAKFGEGDGKAAFQLLNGELKDQFLGFISGESVGYVWDSAPAEL
                     KISASQSRRQLLEAHRQFYTNAIARKWRETFQTETGPLWDKIIPAQSTSSTSFAHALT
                     EWGVKLIGMETAAVMPMTAMRIAFTRGAARQFGADFLYYHAPNFGDTATTFTKVQNFS
                     GPDFFYHSRYGPTMGPSLSWYRKSYYLYYMSGASAIYLEQGGDQFFKPGPGENPLQLN
                     PLGRITDEFMRFAEKYPDRGTPYTPVAFLLDPAHGFEMTDYPQWPFEISQIDRGDRAL
                     RELFGVAYYPGLVVEGEPAIADRQPFVSSVFGDVFDVITAS"
BASE COUNT          303 a          302 c          272 g          249 t
ORIGIN      
        1 cacttgccgt aatgacatca aacacatcac caaacacact cgaaacgaaa ggctgacgat
       61 ctgcaattgc tggttcgcct tcaaccacca acccggggta gtaagccaca ccaaataact
      121 cacggagggc ccgatcacca cgatcgatct gtgaaatctc aaacggccac tgtgggtaat
      181 cggtcatttc aaaaccatgc gcaggatcca gaagaaacgc cacaggtgta tagggtgtgc
      241 cacgatccgg atacttctcc gcgaagcgca taaactcgtc agtgatccga ccgagcggat
      301 tcaactgcaa cggattctcc cccggaccgg gtttgaaaaa ctgatcgcct ccctgttcca
      361 ggtagatcgc tgaagcacct gacatgtaat agaggtaata actcttgcga taccaggaaa
      421 gcgaaggacc catcgttgga ccgtaacgcg aatgatagaa gaagtccggg cctgaaaaat
      481 tttgtacctt ggtgaatgta gtggctgtgt caccaaagtt tggtgcgtgg taataaagga
      541 agtcagcgcc aaactgacgc gcagcgccgc gtgtaaacgc aatgcgcatc gcagtcatcg
      601 gcatcacggc tgccgtctcc attccaatta gtttgacgcc ccactccgtc aacgcatgcg
      661 caaatgaagt acttgaagtt gactgcgcgg gaattatctt gtcccaaagc ggaccggttt
      721 ctgtttgaaa tgtctcgcgc cacttacgag cgattgcgtt tgtataaaac tgccgatgtg
      781 cttcgagtaa ttgacgcctc gactgcgaag ccgaaatctt gagttctgcc ggtgcggaat
      841 cccaaacgta gccgacactc tcacccgaaa tgaaaccaag aaactgatcc tttagctcgc
      901 cattgagtag ttgaaacgcg gcctttccgt cgccttcgcc aaacttcgca gccccgtagt
      961 tgatcagtac cgcaaacgga actttcgtct cgcgaagata acgaagaaac ggacttccct
     1021 ccttgaggaa gtcgggcaga ttgttgatgt agattactgg aacaacaagt ttcgacttga
     1081 agatcggaac gtcctgcgtt cctttgtact tcgcgacaaa ctgatc
//
LOCUS       DATCGC010002261         1176 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_465369, whole genome shotgun sequence.
ACCESSION   DATCGC010002261 DATCGC010000000
VERSION     DATCGC010002261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1176)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1176)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1176
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_465369"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1176
                     /locus_tag="VIJ87_21475"
     CDS             <1..>1176
                     /locus_tag="VIJ87_21475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446985.1"
                     /translation="AAATVADDKFNANLMLAKIGDVNFRLGKMSEALSAYSRMEVKKP
                     ESAASKVTRRFGGLGAIVGGVQTGNVAIAAPTSAITMALEAKKELDEYRVSIVYSSYE
                     LGVGRIAYVSNDPETAKKHFENALSAAGSSLAGVAKLGQVRRFRAAARTSLGDVLLKQ
                     GKFKDASKFYNDAKKGAQDDKRLDLMWPAQRGLGRSLWLQAAQEKDAKKGTPLRESAL
                     ANYRESLTTIETLRQGSLRADEARTTFLSTIKDVFDEAASANAEMAIANQTPGAPLSG
                     KALEYAAEAFRISEESRARSLLDLLSETNAAITEGVPADLLKQKQDNLDRQQDIADML
                     TGVTISNEELKKKPSELDSELEKLQTDYEAIENQIRTASPRYASLTSNQPMTLADVQ"
BASE COUNT          319 a          275 c          345 g          237 t
ORIGIN      
        1 cgccgctgcg acagtcgccg atgacaaatt caacgccaac ctgatgcttg ccaagattgg
       61 tgatgtgaat tttcgtctgg ggaagatgtc agaggcactg agtgcttaca gtcgaatgga
      121 agttaagaaa ccggaaagcg ctgccagtaa agttactcga cgatttggcg gtttaggcgc
      181 gatagttggt ggcgtccaga cgggtaatgt cgccattgct gcgccgacaa gtgcaattac
      241 gatggcgctg gaagccaaga aagaactcga tgagtaccga gtgtcaatcg tctactcgag
      301 ttatgaattg ggagtaggcc gcatcgccta tgtgagtaat gatcctgaga ctgcgaaaaa
      361 gcatttcgag aatgcgttaa gtgcggcggg gagcagtttg gcaggagtcg caaagctcgg
      421 tcaggttcgt cgtttccgtg cagcggcaag aacgagtctt ggcgatgttt tattgaagca
      481 gggaaagttc aaggacgcga gcaagtttta caacgacgcc aagaaaggtg cccaggatga
      541 caagcgtctt gacctgatgt ggcccgcgca acgtggactt ggacgaagtc tttggttgca
      601 agctgcacag gagaaggacg caaagaaggg aacgccgcta cgtgaaagtg cactggcaaa
      661 ttatcgagag tccctcacga caatcgaaac cctgcggcag ggaagcttaa gagcagatga
      721 agcgcgcaca acttttctgt cgaccatcaa agacgtgttt gacgaggcag cgagtgccaa
      781 cgcggaaatg gctatcgcta atcagacacc cggagcgccg ttgagtggta aagctcttga
      841 atatgcagcc gaggcgtttc gcataagtga agagtcgcgt gcgcgttcac ttctggatct
      901 cttgagtgaa actaatgccg cgatcacgga aggtgttcca gctgacctcc tcaagcagaa
      961 acaggacaac cttgatcggc agcaagacat tgccgacatg ctgactggtg tcacgatttc
     1021 caacgaggag ctgaaaaaga agccctcaga gctggactcc gagctagaaa aattacagac
     1081 cgactacgaa gcgattgaga accagattcg gactgccagt ccgcgatacg cctcactgac
     1141 ttcaaaccag ccgatgacgc tggcggacgt tcagca
//
LOCUS       DATCGC010002262         1171 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_465375, whole genome shotgun sequence.
ACCESSION   DATCGC010002262 DATCGC010000000
VERSION     DATCGC010002262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1171)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1171)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1171
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_465375"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..584)
                     /locus_tag="VIJ87_21480"
     CDS             complement(<1..584)
                     /locus_tag="VIJ87_21480"
                     /inference="COORDINATES: protein motif:HMM:NF024578.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEY5446986.1"
                     /translation="MSFRTKFILILISATLTLYTVVGGWISTRAQQPANDPNAQLRIF
                     ESVLQHIQNDYVDEPNMDKVRAGALRGLAYGLDPYSTYLTPDQVREYNQNAKDNQAGI
                     GAELSQVASYLYVIAPVKGSAADQAGLRTGDIIEYIDGKATRDISLYDAKQLLNGAAG
                     SEVKLRILRANASPLTVSVKRGTFRAPAAESRMEA"
     gene            672..>1171
                     /gene="ruvX"
                     /locus_tag="VIJ87_21485"
     CDS             672..>1171
                     /gene="ruvX"
                     /locus_tag="VIJ87_21485"
                     /inference="COORDINATES: protein motif:HMM:NF015607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HEY5446987.1"
                     /translation="MQALLLALVMPTLKRIVLMTKEQTQSHTQGPVLALDLGAKLVGA
                     AVSDDRLVTIKRLAPLKRSNWKQLLKDVETLVKRLDAQTLVIGLPLRLDGSSGSAAEE
                     ATRIAGNFAKSLKLPVYLQDERLTSFDARESLLADGHAEKEIKGLIDGASAALILRDF
                     IKNISL"
BASE COUNT          304 a          289 c          289 g          289 t
ORIGIN      
        1 gcttccattc gagattcagc cgctggcgct cggaaagtcc ctcgcttaac acttactgtt
       61 agcgggctgg cgtttgcacg tagtatgcgc aatttcactt cactacccgc agcaccattc
      121 aaaagctgct tagcgtcgta caacgaaata tcacgagtag ccttaccgtc aatatattca
      181 atgatgtcac ctgtgcgaag cccggcctga tcagcagctg atccctttac cggggcgatc
      241 acatacaggt atgaggcgac ttgggaaagt tcagctccaa tgcctgcctg attatccttg
      301 gcgttttggt tatactcacg aacctgatcg ggtgttaggt aggtcgaata cgggtcaagt
      361 ccgtatgcaa ggccacgcaa cgcgcccgct cgaaccttat ccatgtttgg ctcatccacg
      421 tagtcatttt gaatgtgctg aagcacgctt tcgaaaattc gaagctgagc attcggatca
      481 ttcgccggtt gttgagctcg agtggaaatc cagccgccaa ccactgtata cagagttaag
      541 gtagcggaga tcaggatcaa aataaacttg gttcgaaatg acatttaatt acctcttgga
      601 tacgtaacaa cagaagcgcc aaacatcgcg cgattcgcga gtttgagtat gatacaggcg
      661 gcatttagca cgtgcaagcg ttgcttctag cactcgtgat gccgacgtta aagcgaattg
      721 ttttgatgac caaagaacaa actcaatcac acactcaagg cccagttctc gccctcgatc
      781 tcggtgccaa gctcgttgga gcggcggtat cagatgatcg tttagtcacg ataaagcgac
      841 tagctccact caaacgttca aattggaagc agctactcaa agacgtagaa acgctggtca
      901 aacgcttgga cgctcaaacg ttagtaattg gtttgccact tagattagac ggatccagtg
      961 gttctgcggc tgaggaagcc acgcggatag caggaaattt tgcgaagtct ttgaagctgc
     1021 cggtttattt gcaagacgaa cgtctgacct ctttcgacgc gcgcgagtca ctgttggcgg
     1081 atgggcacgc agaaaaagag atcaagggcc ttattgacgg agcatcggct gccttgattc
     1141 ttcgagactt catcaaaaac atttcactaa g
//
LOCUS       DATCGC010002263         1148 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_429919, whole genome shotgun sequence.
ACCESSION   DATCGC010002263 DATCGC010000000
VERSION     DATCGC010002263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1148)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1148)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1148
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_429919"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(28..969)
                     /locus_tag="VIJ87_21490"
     CDS             complement(28..969)
                     /locus_tag="VIJ87_21490"
                     /inference="COORDINATES: protein motif:HMM:NF044972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HEY5446988.1"
                     /translation="MSIQSFLLMQEVGSVLGRIWYYLTLDFHLGQLTVSVVSVVFGAL
                     VLTITIIVSSAGSKLLERRIAARRHIDPGLRYTIARLVKYLLMMVGTLIALRQAFGLD
                     LTSIAVIFTALSVGIGFGLQYIAADIASGFILLFERPIRVGDRITIGDDEGDVQSINL
                     RTTVVTTNDRVAIIVPNSKLVSQRVVNWSYGDPRARISIPVSVADDSDTQLVTSTLLD
                     VAKEVENVLGDPPPRVQFLRFGAYSLDFRLLVWTNQPRRNMQIRSDINYRIARLFRER
                     GIKIPYPKQEFLLRNLELPEHPDSEFLRPDSELLRED"
BASE COUNT          312 a          303 c          274 g          259 t
ORIGIN      
        1 atctcaatct caatctgaga tttgaaatca atcttcacgt agcaactccg aatccggtct
       61 tagaaactcc gaatccggat gttcgggcaa ttccaaattc ctcaacagaa actcctgctt
      121 gggatacgga atcttgatcc cacgttctcg aaacaggcgt gctatgcggt agttgatgtc
      181 gctgcggatc tgcatatttc gacgcggttg attcgtccac accagtaatc ggaaatccag
      241 cgagtacgct ccaaacctta aaaactgtac tcgtggcgga ggatcgccca gtacgttttc
      301 tacttccttt gctacgtcga gcagcgtgct ggtcaccagc tgagtatctg aatcatcagc
      361 aacgctaacc ggaatcgata tgcgagcgcg cggatctccg tacgaccagt taaccacgcg
      421 ctgactaacc agctttgaat ttgggacaat gatggcaacc cgatcgttcg ttgtgaccac
      481 ggtcgtgcgc aagttgatgc tctgaacatc gccttcgtca tctccaatcg tgatgcgatc
      541 accgacgcga atcggacgct caaaaagcag aatgaatccc gaggcaatgt cggcggcgat
      601 gtattgcaaa ccaaaaccaa taccaacaga caatgcagtg aagataacgg cgattgaagt
      661 aaggtcgagt ccaaacgcct gtctcaaggc gatgagagtc ccaaccatca tcaacaaata
      721 cttgactagt cgcgcgatgg tgtaacgaag gccgggatcg atgtggcggc gtgcggctat
      781 tcgtcgttcg agtagcttgc tgcctgcgct cgaaacgatg atggtgattg ttagtacaag
      841 agcgccaaag actacgctta caactgagac tgtaagttgt cctaaatgaa aatcgagcgt
      901 caggtaatac cagatgcggc ccaggacgct gccgacttcc tgcataagca agaaactttg
      961 aatagacatc accaagttgg acatctcacc tcacccgagt agggtagacc aacattcaac
     1021 ccaagaacct agcaattaca ttctaaccat accggaatat tcttgcgtag agttggcact
     1081 ccaactagat cgaaaccctt tagtggcgcc ctaatgtgcc aggacgcgct cttctcggac
     1141 cgcaggcg
//
LOCUS       DATCGC010002264         1518 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_163882, whole genome shotgun sequence.
ACCESSION   DATCGC010002264 DATCGC010000000
VERSION     DATCGC010002264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163882"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..467)
                     /locus_tag="VIJ87_21495"
     CDS             complement(<1..467)
                     /locus_tag="VIJ87_21495"
                     /inference="COORDINATES: protein motif:HMM:NF019468.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1648 domain-containing protein"
                     /protein_id="HEY5446989.1"
                     /translation="MSPPPPVHSFRLFTNLAFEIVVVIFTLVPIILLVYFYSEIPERV
                     PEYLNLRGDVEVWGSKSFFTAFRIPLMALDLQALCLLAKLGAWQQSVVQPDRTDPSPN
                     RDQTLKLTGSLFDWFRVFIAIKLGASSLEVIFYSVARFHYLTTLTRVTSWLSS"
     gene            complement(485..1036)
                     /locus_tag="VIJ87_21500"
     CDS             complement(485..1036)
                     /locus_tag="VIJ87_21500"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY5446990.1"
                     /translation="MSQIESANTIEAATLRSLLKNQYRAALAMLREALDQCPDSLWAN
                     DGHRNSFWQIAYHTLFFTHLYLQRSEFEFRPWKDHQSAVQHEDGIAGPADPNSTLPLI
                     PEPYTKEQVLEYWQFCNGIIDGAIDAMNLNDAASGFSWYKVSKLEHQFISLRHIQHHT
                     GQLADRLRASVGVGTKWVHSRPA"
     gene            complement(1063..>1518)
                     /locus_tag="VIJ87_21505"
     CDS             complement(1063..>1518)
                     /locus_tag="VIJ87_21505"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAT domain-containing protein"
                     /protein_id="HEY5446991.1"
                     /translation="VAGANILHISSPSLLDDTSAMSSFVGLAAAPGKQNEGFMQAREI
                     MNLQATVDLVVLSGAQQKSGFSGAGILGMTWAWFAAGSSSTIFNRWQADPVASNQLMI
                     DFYSRIKPGTRSPDSKAAALRQSVLSLRRNPDYQHPYYWASCAMIGDSR"
BASE COUNT          387 a          385 c          383 g          363 t
ORIGIN      
        1 atcgacgaca accaggaggt tactcgagtc agcgttgtca gataatggaa acgcgctacg
       61 ctataaaaga taacttcaag cgacgacgcg ccgagcttga tcgcgatgaa tactctgaac
      121 cagtcaaaca aggatccggt caactttaga gtttgatctc gatttggcga ggggtctgtt
      181 cgatcgggtt gtacgacact ttgctgccac gctccaagct ttgctaaaag gcaaagtgcc
      241 tgaagatcaa gtgccatcaa tggtattcga aatgcggtaa agaaactctt gctgccccaa
      301 acttctacgt cgcctcgaag attcaagtac tctggtactc tttcgggaat ctcgctgtag
      361 aaatagacga gtaaaataat tggtacgaga gtaaagatga ctacgacaat ctcgaaggca
      421 agatttgtga agaggcgaaa gctatgcact ggcggaggcg gtgacattta atactttcgt
      481 gcccttacgc gggccgagag tgcacccact tcgttccaac gcccaccgaa gcacgcaagc
      541 gatccgcgag ttgtccggtg tggtgctgga tgtgacgaag gcttatgaat tgatgctcta
      601 atttcgacac tttgtaccaa ctgaagccac tcgccgcatc attcaggttc attgcatcga
      661 tggcgccgtc aatgatccca ttacagaact gccagtactc aagcacctgt tccttcgtat
      721 aaggttcggg aattaacggc aaggtgctgt ttgggtcagc ggggcctgct attccgtcct
      781 catgctgtac tgcgctttga tggtccttcc acggccggaa ttcgaattcg cttcgctgca
      841 gatagagatg agtgaagaac aaggtgtgat aagcaatctg ccagaatgaa ttgcgatgtc
      901 catcgtttgc ccaaagacta tcaggacatt ggtcaagtgc ctcgcggagc atggccagcg
      961 cggcgcgata ctgattcttc aacagtgagc gcagagttgc tgcctcaatg gtgttagcgg
     1021 actctatttg actcacaaac gactcctaca cgtcttggat cgctatcgac tgtcgccgat
     1081 catagcgcag ctggcccaat agtatggatg ttggtaatcg ggattccgcc taagcgacag
     1141 tacactttgt cgcaacgctg cggccttcga gtcgggactt cgcgtacctg gcttaatcct
     1201 tgaatagaag tcaatcatca attggttgct cgcaaccgga tccgcctgcc atcgattgaa
     1261 tatcgtcgat gaactacccg cagcgaacca tgcccaggtc attccaagta tgcctgcccc
     1321 actaaaacca ctcttctgct gagcgccgga aagaacaact aaatcgacag tggcctgcag
     1381 attcataatt tcgcgagcct gcatgaaacc ttcgttttgt ttgcctggcg cggctgccag
     1441 tccgacaaac gaagacatcg cactcgtatc atcgagcaag gacggtgaag aaatatgcag
     1501 aatgtttgcg ccagcaac
//
LOCUS       DATCGC010002265         1629 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_397084, whole genome shotgun sequence.
ACCESSION   DATCGC010002265 DATCGC010000000
VERSION     DATCGC010002265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1629)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1629)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1629
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_397084"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            189..273
                     /locus_tag="VIJ87_21510"
     tRNA            189..273
                     /locus_tag="VIJ87_21510"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:221..223,aa:Ser,seq:tga)
     gene            491..>1629
                     /locus_tag="VIJ87_21515"
     CDS             491..>1629
                     /locus_tag="VIJ87_21515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446992.1"
                     /translation="MRKHSIIALSLSNLCFFEAWREVLSPQSFSYLYYWKQYPGYAAF
                     VALVINVVLLAVVFFGGFNLLRRLGSPFWTRLGYFLFIVILLRALNNIRSQFEILSTS
                     HLRMLVGRLGYIAIVTIVLALLSLAIVRFGLNRVARAGTLILLICSPFGLIGLVQATW
                     IVLKYGPPVAQEKTAAPESPTDTAAKPRVLWLIFDEMDQNLAFDSRSEGFSLPELDRF
                     RTEAFVANNAYPPAGHTSQSIPALLTGQLISRVQPIAPAELSLTIPPSDQARNWSAES
                     DIFSDARSLGLNTALVGWYHPYCRVIGDRLTSCRWEPGTQRLDPTKLSLKKNLVRQEA
                     ELLRLVPFSNTVIARLSSETKRNYTSEHLADSLALMREADNVTAD"
BASE COUNT          353 a          419 c          412 g          445 t
ORIGIN      
        1 gttcgatccc gcggataacg ttttgtgtgt tggcttcgaa gtcgccgttg gtggtgttta
       61 tttggccgat ggtgacgcgc atttgaatag tgagcgggaa cggttctgaa tggtgaacgc
      121 ctacgcttcg caaacctctt cagcttacgc tatattctaa ccccaactgc ggacgcgtcg
      181 cacaatgcgg aggggtcgca taatggtagt gcagcggtct tgaaaaccgc cgaccgaaag
      241 gttatgcagg ttcgagtcct gtcccctccg ccatacctcc ctcgtcagat gcgttgtctc
      301 ttccgacgaa attatcacgc ccactcaacg aaaccattta gacatttcag agttgtcagt
      361 gtctgtgtaa acgatgaccg cggagtgtca caaatcattc gtgcgggcaa cgtgaaatag
      421 aattaggcca tcttcgtaat accctcgtct gaattaagtc ttattccaac tccatcccaa
      481 agcgactgat atgcgtaagc attcgatcat tgcgctctcg ctctcgaatc tctgtttctt
      541 tgaggcctgg cgcgaggtac ttagtcctca gagcttttcc tacctttact attggaaaca
      601 gtatccgggt tacgccgcat ttgtcgcgct cgtcatcaat gtagtgttgc ttgctgttgt
      661 tttttttggt gggttcaatt tgctacgtcg gttgggtagt ccattttgga caaggctagg
      721 ctacttcttg ttcattgtga tcctgctgcg agcgctcaac aatatcaggt cgcaattcga
      781 aattttgagc acctcacatt tgcgcatgct cgtcggtcga ttgggctaca tcgcaattgt
      841 gacaatagtg ctggcgttac tctcgctggc aatcgtccgt ttcggcctca atcgagttgc
      901 gcgagctggc acattgattt tgctgatctg ctctcctttt ggattgatag gattagtcca
      961 ggcaacatgg attgtgctga agtatgggcc acccgtcgca caggaaaaga ctgccgctcc
     1021 ggaatctccc actgacactg ccgcgaaacc acgagtactg tggttgatct tcgacgagat
     1081 ggatcaaaat ctggcgttcg actcaagatc tgaagggttt agtctacccg agctggatcg
     1141 tttccggacc gaagcttttg tcgcaaacaa tgcttatccg ccggctggac atacgtcgca
     1201 atcgatccct gcgttactca cgggccagtt gatttcccga gttcaaccta ttgctcccgc
     1261 agaattgtct ctgacgattc cgccaagtga tcaggcgcgt aactggagcg ctgagtcaga
     1321 catcttttcc gatgcgcggt cgctgggatt gaacactgca ttggtaggtt ggtatcaccc
     1381 ttactgtcgt gtcatcgggg atcggttgac ctcctgccgt tgggaaccgg ggacccagcg
     1441 gctcgacccg acgaagttga gtttgaaaaa gaacctggtc cgacaagaag ccgagttact
     1501 cagactcgtg cctttttcaa acaccgtcat cgcgaggctg tcctcggaaa cgaaaaggaa
     1561 ctacacctca gaacatcttg ctgattctct agcattgatg cgagaagctg ataacgtaac
     1621 cgctgatca
//
LOCUS       DATCGC010002266         1540 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_497845, whole genome shotgun sequence.
ACCESSION   DATCGC010002266 DATCGC010000000
VERSION     DATCGC010002266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1540)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1540)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1540
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_497845"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1494
                     /locus_tag="VIJ87_21520"
     CDS             <1..1494
                     /locus_tag="VIJ87_21520"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEY5446993.1"
                     /translation="RFFTDLARAMKLSRFAVTVSLVLACHAICAAQVGPTSARGEGQS
                     LGLGQTTAKLDAYVQSEMRRYKIPGVSLAVLRKGQPTILKSYGLSNVELAVPVKPETI
                     FQSGSIGKQFTAAAVMLLVQDGKLSLDDKISKHLPDTPDSWKEITIRDLLTHTSGMGD
                     YPDEISLRGTYTEDQYLDIFKKAPLNFAPKTSWDYSNVGYVTLGILISKLTGKFYGEF
                     LRERLFGPLGMSTARVISEADIVPNRAAGYRLLNGELKNQEWVSPSTNSTADGSYYVS
                     LLDMAKWDEGLKRDFSSEPSAKRVFTRSSLEQMWTPVKLKDGRVKGYGFGWFTDTIHN
                     RRLVFHGGAWQGFKSYIIRFLDEDLTIIFLANSWDTNDFKFARGLISIFYPEFAYQPF
                     EAITDREPKITSLLPRVMMQLKNGKPDKELFTPQLQPSDVTKIAAMLNSLTLPVAVIH
                     LAELIERRDEGESRVYKYVLTDIGQSLLCTLKVTRDDKIAKFELALR"
BASE COUNT          374 a          389 c          387 g          390 t
ORIGIN      
        1 cgtttcttta ccgacttggc ccgcgctatg aaactttcac gcttcgctgt aaccgtttcg
       61 ctagttctcg cttgtcacgc aatctgtgcc gcacaagtgg gaccaacgtc cgctcgcgga
      121 gagggtcaaa gcttaggtct gggccaaacc actgcgaagc tcgacgcgta cgtccaatcc
      181 gaaatgcgca gatacaaaat ccccggcgtt tccttagctg tcctgcgcaa gggccagccg
      241 acgattctta aaagctacgg tctctccaat gtcgaactag cggttcctgt aaaacccgaa
      301 accatttttc aatccggctc gatcggtaaa cagtttacgg cggcggctgt gatgctgctg
      361 gtccaggacg ggaaactatc gctcgacgac aagatcagta aacacctgcc tgacactccc
      421 gacagctgga aagagatcac aattcgcgac ttgcttactc atacctccgg catgggggac
      481 tatcctgacg aaataagtct gcgcggtact tacactgagg accaatacct ggacattttt
      541 aaaaaagccc cgttgaattt tgctccgaag acgagctggg actacagcaa cgtaggttat
      601 gtgacgttgg ggatcctcat tagcaaactc accggaaagt tttatggtga gtttttgcgc
      661 gaacgtctat tcggacctct gggaatgtcg acggcacgtg tgatatcaga agccgacatc
      721 gtgcctaatc gggccgctgg ctaccggctc ctgaacggtg aactcaagaa tcaggaatgg
      781 gtatcgccgt cgacgaactc aactgccgat ggctcttact atgtttcgct cctggacatg
      841 gccaagtggg atgaggggtt aaagcgagat ttttcttcag aaccttctgc gaagcgagtc
      901 ttcacgagat cttcgctcga gcagatgtgg actcctgtga aactgaaaga tggtcgcgtc
      961 aaaggttacg gctttggttg gtttactgac acgattcaca accggcggct ggtctttcat
     1021 ggaggagcgt ggcaggggtt caagtcgtac atcattcgtt ttctcgatga agacttgacg
     1081 atcatctttc ttgccaattc atgggacacg aacgacttca aatttgcgcg cggattgatc
     1141 tcaatcttct atcctgagtt cgcctatcaa cctttcgagg ccatcactga tcgagaacca
     1201 aagatcacct cactgcttcc tcgagtgatg atgcagttga aaaacggtaa acccgacaaa
     1261 gaactcttca cgccccaact tcaaccttct gatgtgacaa agattgcggc gatgcttaat
     1321 tctttgacgt tgcccgtagc ggttattcat ttagcggaac ttattgagag gcgagatgaa
     1381 ggtgagtcac gagtctacaa gtatgtcctc acagacattg ggcaatcatt gctgtgtact
     1441 ctgaaggtaa ctcgggatga caagattgcg aaatttgagt tagcccttcg ataggctcca
     1501 ccatccagtt ttaattgagg ggcgcgcgtt tctttaggtc
//
LOCUS       DATCGC010002267         1189 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_465622, whole genome shotgun sequence.
ACCESSION   DATCGC010002267 DATCGC010000000
VERSION     DATCGC010002267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1189)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1189)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1189
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_465622"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..199
                     /locus_tag="VIJ87_21525"
     CDS             <1..199
                     /locus_tag="VIJ87_21525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5446994.1"
                     /translation="SERAGIAFGKARMAIETIEVSYKKALALLELAQIQKSVSLQPNQ
                     TDRSAVIDPETVWISSNPIME"
     gene            250..>1189
                     /locus_tag="VIJ87_21530"
     CDS             250..>1189
                     /locus_tag="VIJ87_21530"
                     /inference="COORDINATES: protein motif:HMM:NF013132.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008509 - monoatomic anion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006820 - monoatomic anion transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DASS family sodium-coupled anion symporter"
                     /protein_id="HEY5446995.1"
                     /translation="MEQPSQFQQPTSDKTTAEKFFSKSALVRWGAVLLLPVVILLIPV
                     PPGITPQSWRLLAIFAATIMGSILQPLPGSAMVLLGVTALSLFKVMTIEESLTGYADP
                     VVWLVLAAFFISRGMIKTGLGRRIAFLFIRAIGRHSLGLGYALISTEALLGAVIPSTG
                     ARSGGIIFPIAKSLAEAYDSKPGPTARRLGAFLMTTVYQCNVIVCAMYLTGQASNPII
                     SKLAKEVTGVDITYALWITAAIVPAIVSLFLVPLLIYRVFPPEIKHTPAAAQFASDEL
                     KQMGKTKWSEWVMLLVFALIAVLWMTPKLTGFHYATV"
BASE COUNT          257 a          313 c          306 g          313 t
ORIGIN      
        1 aagtgagcgc gccgggattg cgtttggaaa ggcgcgcatg gctatcgaaa cgatcgaagt
       61 ctcgtataag aaagctcttg ccctacttga gttggctcaa atccagaagt cagtcagtct
      121 ccagccaaac cagactgacc gatctgcagt catcgatccg gaaaccgttt ggatcagttc
      181 taatccgatc atggagtagg tcggctgcag tgtcatagcc gtattatcgc ccgcttgaag
      241 gacgattgag tggaacaacc atcacagttt cagcaaccca cttcagataa aacgaccgcc
      301 gaaaagtttt tctccaaaag cgcactcgtg cgttggggag ccgtcttact tctgccggtc
      361 gtaatcctct tgattcctgt tccaccaggt atcacgcctc aatcctggcg actgcttgcc
      421 attttcgctg cgacgatcat gggatcgatt cttcagccgt tgccgggcag tgcaatggtt
      481 ttgttgggcg taactgcgtt gtcgctcttc aaagtgatga caattgaaga gtcgctcacc
      541 ggttacgctg atccggtggt ttggctggtt ctcgcggctt tcttcatctc gcgaggaatg
      601 atcaagactg gtctgggacg tcgtattgcc tttctcttca tcagagcaat cggtcgacat
      661 tctctcggcc tcggttacgc actgatttcg acggaagcgt tgctcggagc ggtaatccca
      721 tccaccggcg ctcggtctgg tggaatcatc tttccaatcg caaagagcct ggctgaggct
      781 tacgactcga aacctggtcc gacggccaga aggcttggtg cttttctgat gacgactgtc
      841 taccagtgca acgtcatcgt ttgtgcaatg tatttgacgg ggcaggcttc caatccaatc
      901 atctcgaagc tggcgaagga agtaacgggc gtcgacatca cgtatgcgct ctggataact
      961 gcggccatcg ttcccgcgat agtaagtttg ttcctcgtcc ctttgctgat ctatcgcgta
     1021 ttcccacctg aaataaagca cacgcccgcc gctgctcaat ttgcttctga tgaacttaaa
     1081 cagatgggca agacgaaatg gtcggaatgg gtgatgttac tcgtttttgc cctaattgca
     1141 gtgctctgga tgactcccaa actgactggc tttcactatg cgacagtcg
//
LOCUS       DATCGC010002268         2672 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_265839, whole genome shotgun sequence.
ACCESSION   DATCGC010002268 DATCGC010000000
VERSION     DATCGC010002268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2672
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265839"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..854)
                     /locus_tag="VIJ87_21535"
     CDS             complement(<1..854)
                     /locus_tag="VIJ87_21535"
                     /inference="COORDINATES: protein motif:HMM:NF012876.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HEY5446996.1"
                     /translation="MRFRLNLQWKILLLVALSMSLIVFGASYLHSVRTRALIEKDHHE
                     NAVNQTVALANRISEYDYFSSLEDLQQEMQLVAGSRPDFKQIDVYQNDHDGARVIATT
                     APGANSLASLSTDHRRDAEPAGASSEEISRENSDYWLITTTISNPKHSGLIKVLVLRS
                     DRHKLVSSLHRQYNLALVGATVTSVALLYLLFVYFFRRPVRNIVLTMAEARKGNLSAR
                     ALVCRDDELGEIARGFNQLMDDIHARSNERDDLLNKVGDLNDQLVKRVNAATGELRNA
                     NANLIRTQ"
     gene            964..2106
                     /locus_tag="VIJ87_21540"
     CDS             964..2106
                     /locus_tag="VIJ87_21540"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEY5446997.1"
                     /translation="MFAGFWILLYAFACKLSVGQPQTDPDDGHCNEPLTSIFKRVSPS
                     VVFVTAVSINPYRPNDRVEHAVGSGFIIDSSGLILTNSHLVFGSQLIVVTLDDGTTVS
                     ARVIGADPIYDVALLRIPKPTEGLLNVTEMGDSDRLRVGEEVVAIGNPLGLDQSLTRG
                     VVSAINRFLPETSFSMEQPLIQMDTPVNPGNSGGPLVNRCGEVVGITTSVMLGAQNIG
                     FSIPINMAKLLVPQLLKDGRVVRPWVGFHGQFIENGLQQVFSFPLVQGFLIEVIEPAS
                     PAEKAGLHGGDLELNVAGRDFLIGGDIVTNINDTALTSPETMIKTLRSLSVGSVLRMK
                     VFRQGKYVEVKYALPERPLLPGDVPSEQLVMPTKYGSAGKSQKLRF"
     gene            complement(2350..>2672)
                     /locus_tag="VIJ87_21545"
     CDS             complement(2350..>2672)
                     /locus_tag="VIJ87_21545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY5446998.1"
                     /translation="AYPWPGNVRELESTIEYAVLHARGHDVVPEDLPERLQSPQVRAA
                     ARSPLSALFEDLPSLDELERRYLLFVLVVAAGNRTRAAEILGIDRRTLYRMVERYEIN
                     GDSE"
BASE COUNT          652 a          684 c          690 g          646 t
ORIGIN      
        1 tgctgagtac ggatcaagtt cgcgtttgca ttccgcaact caccagttgc agcattcact
       61 cgcttaacta actgatcgtt tagatctcca actttgttca gtaagtcatc tcgttcgttc
      121 gaccgcgcat gaatgtcgtc catcaactgg ttaaatccac gcgctatctc acccaattcg
      181 tcatctcgac acacaagcgc gcgcgctgac agattgccct tgcgagcctc tgccatggtt
      241 agcacgatgt ttctgacggg acgccgaaag aagtaaacaa acagcaggta caacaaagcg
      301 actgaagtga cagtggcgcc cacgagcgcc aggttgtatt gccgatgaag actgctcacc
      361 aacttgtggc gatcgctccg cagcaccagt acctttatca aaccggagtg ctttgggtta
      421 ctaatcgtgg ttgtgatcag ccagtagtcg ctgttttcac gcgagatctc ctccgaactt
      481 gcgccggcgg gctctgcatc acgccggtgg tcggtcgaca gcgacgcaag actatttgcc
      541 ccaggtgcgg tagttgctat cacacgggca ccgtcgtgat cgttctgata gacatcaatc
      601 tgtttgaagt cgggccgcga acccgcgacc aattgcattt cttgttgtaa gtcttccaga
      661 ctcgagaagt aatcgtattc tgagatacgg ttcgcaagtg cgactgtttg gttaaccgca
      721 ttttcatgat ggtccttctc gataagcgct cgcgttcgga cgctgtgcaa ataggacgcg
      781 ccgaaaacaa taagcgacat cgagagcgcg acgagcagta agatcttcca ctgtaggtta
      841 agcctgaatc gcacccagct ttcctcacga ccgaaagaat actaatcaca ctggcacagc
      901 aattcccatg cacctccgtc tatgaggact acttttaatc aacttagacg cgcgaggttt
      961 attgtgttcg caggattctg gattctctta tatgcgtttg cttgtaagct ctcggtggga
     1021 cagccgcaaa cggatccgga cgatggtcat tgcaacgaac ctcttacttc tatcttcaaa
     1081 cgagtttcac cttcagttgt ttttgttacg gctgtatcta tcaatccgta tcgtccgaac
     1141 gatcgggtcg agcatgcggt cggctccggg ttcataatcg atagttctgg cttaattctt
     1201 accaattctc acctggtttt tggcagccag ttgatcgttg taacgttgga cgatggaacg
     1261 acggtatcgg ctcgagtaat tggagctgac cccatctatg acgttgcctt actcagaatc
     1321 cctaagccca cagaggggct actgaatgtc accgaaatgg gagattctga tcgactccga
     1381 gttggtgaag aagtcgtcgc aatcggcaac cccctgggac tggatcagag tttgactcgt
     1441 ggtgtcgtct cggcgatcaa tcggttcctc ccggaaacat ccttcagcat ggagcagcca
     1501 ctaattcaga tggacacccc tgtgaacccg ggaaactcag gtgggccgtt agtaaatcgt
     1561 tgcggtgaag ttgtggggat caccacgagc gtcatgctcg gcgctcagaa cataggcttc
     1621 tcgataccaa tcaacatggc caagctatta gtaccccaac tcctcaaaga tggaagagtg
     1681 gtgcgaccat gggtgggctt ccacggccag ttcattgaaa acggactaca acaagtcttc
     1741 agctttccgc tagtccaggg ctttctgatt gaagtgatcg agcccgccag ccctgcggaa
     1801 aaagctggct tacatggtgg cgacctcgaa cttaatgtcg ccgggcgtga tttcttgata
     1861 ggtggagaca tcgtcactaa catcaatgac accgctctaa cctcgcctga aacaatgatc
     1921 aaaacactga ggtccttatc tgttggttcc gtcctcagga tgaaagtttt tcgccagggt
     1981 aagtatgtcg aagtgaagta tgcgctgccg gagcggcctt tgctgccggg tgacgttccg
     2041 agcgagcagt tagttatgcc aacaaaatat ggatcagcgg ggaagagtca aaagctgcgg
     2101 ttttgaaata gtgaggctaa atggtttcgc gcggcaaaag agccacactc atctcaaaag
     2161 gttccaatga aaactcccat gtggaatgga caagctggtg gcatgttcgt tgctctgtca
     2221 tggactatgt agcgggtaga tgaacgagtc gagcaactat gggagtcgtt catcaaatcg
     2281 agcgaggagt aaactgcggg cgactcagaa atgcaggggt ctggaagccg cccgcagttt
     2341 gggttgcgat cattcagaat caccattgat ttcatagcgt tcaaccatcc gataaagcgt
     2401 gcgccgatcg ataccaagaa tctcggccgc acgcgttcga ttgccggcgg cgacaaccag
     2461 aacaaaaaga agataacgac gctccagttc atcgagtgat ggtagatcct caaaaagagc
     2521 tgacaacggt gagcgcgcag ctgcacgaac ttggggtgat tgaagtcttt ctggcaaatc
     2581 ttccgggact acgtcgtggc cgcgcgcgtg taacactgca tactcaatcg tcgattccag
     2641 ctcacgaacg ttcccaggcc aaggatatgc aa
//
LOCUS       DATCGC010002269         1543 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_265860, whole genome shotgun sequence.
ACCESSION   DATCGC010002269 DATCGC010000000
VERSION     DATCGC010002269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1543
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265860"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            170..1417
                     /locus_tag="VIJ87_21550"
     CDS             170..1417
                     /locus_tag="VIJ87_21550"
                     /inference="COORDINATES: protein motif:HMM:NF033594.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ISNCY family transposase"
                     /protein_id="HEY5446999.1"
                     /translation="MTTLTMKDEKRLEVIQRVYRSELTVAQGALVMGLSERQCYRIKA
                     RVGKVGAKGVVHGNRGQPCKHKTEEETVKQIVELARGKYQGFNDHHLTEKLQEQEQID
                     VSREKVRRILRSHGIASPKKRRGIKHRSRRERRAAEGMMLQVDGSPHDWLQGRGPRLC
                     LIGAIDDATSKVMGAFFVQAESSWGYFTLFSDIFKEHGLPQSVYSDCHSVFWTDREPT
                     LAEQLINKKPTTEVGRGLEDLGVTLILAHSPQAKGRIERLWNTFQDRLVSELRLAKAK
                     SLEQASVVLERYLPMHNRKFSKPAKAQPAWRKVSAVQIERALCFKQQRTVAKDHTVTF
                     DGIIFQIPKKSPYRSYANRRVDVHVFLDGAVQFFYKSERIASFDAKTTHTLGLYRMHG
                     KKEGFRYGPVSKLDAQTGNVTLT"
BASE COUNT          408 a          391 c          421 g          323 t
ORIGIN      
        1 cgcgcggaac catgatgctc ctgtcgcgac ggatccgcgt tgattaatac ctggcaatcc
       61 catcttcgga ttatagccga cgcagcgact agagcccagt aaatttcctg tagtagcaaa
      121 gtgaatctga caggggataa cagcaacgtg attatgtcag ggtatggaga tgacaaccct
      181 gacaatgaaa gacgagaaac gactagaggt aatccagcga gtgtatcgaa gcgagttgac
      241 cgtggcgcaa ggcgcactgg tgatgggatt aagcgaacgg cagtgttacc ggatcaaagc
      301 ccgggtcggt aaagtcggag ccaagggagt ggttcacggt aaccgtggac agccctgtaa
      361 acacaagact gaggaggaga cggttaagca gatcgtagaa ttagcccgag ggaaatacca
      421 aggcttcaac gatcaccatc tgaccgagaa actccaagaa caagaacaga tcgatgtcag
      481 tcgtgaaaag gttcgccgta ttcttcgttc ccacgggatc gcatcaccca agaagcggcg
      541 cggaatcaaa catcgaagcc ggcgagaaag acgagccgct gaaggcatga tgctccaggt
      601 cgatggctca ccgcacgact ggctccaagg ccggggaccg cgtctgtgtc tgatcggcgc
      661 catcgacgat gccaccagca aggtgatggg agctttcttt gtccaggccg agagttcgtg
      721 gggttacttc acgttgtttt ccgatatctt caaggagcac ggactgcccc agtcggttta
      781 tagtgactgt cattcggtgt tttggacgga tcgagagccg acgttagcgg agcagttgat
      841 taacaagaag cccaccaccg aagtcggccg aggcttagaa gatctcgggg tgactttgat
      901 cctagcccat tctcctcagg ccaagggcag aatcgaaaga ctgtggaaca ctttccaaga
      961 ccggctggtc agtgagttga gactggccaa ggccaagagc ctggaacaag catccgtggt
     1021 cctggagcgt tatcttccca tgcataatcg caagttctcc aagccggcta aggcacagcc
     1081 ggcctggaga aaagtcagtg ctgtgcagat cgaacgggct ttgtgtttca aacaacagcg
     1141 tactgtggcc aaagaccata ccgtcacctt cgatggaatt atctttcaga tccccaagaa
     1201 atctccctat cgttcttacg ccaacagaag agtcgatgtc catgtgtttc tcgatggcgc
     1261 ggtgcagttt ttctacaaat cagagagaat cgcttccttc gacgccaaga caacgcacac
     1321 acttggcctg tatcgaatgc acggcaagaa ggaaggattc cgctatggtc cggtttctaa
     1381 actcgatgct caaaccggta atgtcaccct gacataatca cgttgctgtt aacctgacag
     1441 attgacgttg ctacaacaga aatttgtcaa agcgtttgcc gacgcaacgc gttatatcgt
     1501 cgacaaccgg gaaggcacca tgcgcccctt gacgcagtta ctg
//
LOCUS       DATCGC010002270         1036 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_164197, whole genome shotgun sequence.
ACCESSION   DATCGC010002270 DATCGC010000000
VERSION     DATCGC010002270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1036)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1036)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1036
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164197"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            141..953
                     /locus_tag="VIJ87_21555"
     CDS             141..953
                     /locus_tag="VIJ87_21555"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEY5447000.1"
                     /translation="MTRYRGDLDDEREKELYSREARLRREGLGSYEEPFAARRQLEDE
                     RRPYDNRFGERAEYNYDEPRYSESRERFRDSNRRSALYDGRGDIAPRYSRERIATRSR
                     LRCRDIMTRDLAVATRDSTLREVALMMKQEDTGVIPVVDYDAGGNGKENSTRNYDSRS
                     YSRGKLVGLITDRDIAIRAVSEGKDCTATRAEEIMSTDIHTARPNDRVVDVIRKMGNK
                     QVRRIPVTNETGYLSGMISMADIAVETHEDHELAEAIEEISKGSSFWHRIFG"
BASE COUNT          273 a          256 c          291 g          216 t
ORIGIN      
        1 aataatttgt ggctggcatt cccctctagt tcgctggcgg gctgaagagc tcgccgaagc
       61 cccctcaaca ttttccaact gctgtcgttg ctccaagttg ggcgcgacag atttttgttc
      121 cttgcaagga ggtagtagta atgacgagat atagaggcga cctggacgac gaaagggaaa
      181 aagaacttta ctcacgcgaa gcccggctga gacgagaagg acttggaagt tacgaggaac
      241 catttgccgc caggcgacaa ttggaggatg aacgacggcc ttatgacaac cgctttggag
      301 aacgtgcgga atacaactac gacgagcccc gatacagtga aagtcgagag cgtttccgtg
      361 atagcaaccg tcgcagcgca ctatatgacg gacgaggtga catcgccccg cgctactctc
      421 gcgaacgtat cgctacccga tcgcgtttgc gttgtagaga catcatgact cgcgacctcg
      481 ctgtcgccac tcgggattcg acgctacgtg aagtcgcgct gatgatgaaa caagaggaca
      541 cgggtgttat cccagtcgtt gactacgacg ccggcggcaa tggcaaagag aacagcacgc
      601 gaaactatga ttcacgttcc tattcgcgcg ggaagttagt cgggttgatc actgaccgcg
      661 acatcgctat tcgtgcagtg tcagaaggaa aagactgcac cgcaacgcgc gcggaagaga
      721 ttatgtcgac ggacattcac actgcgagac caaatgatcg cgttgtcgat gtcattcgca
      781 agatgggtaa taaacaggtg cgccgcatac cagtaaccaa tgagacggga tacctcagcg
      841 gtatgatctc aatggctgac attgcggttg aaacccacga ggaccacgaa ctggccgaag
      901 caattgaaga gatttcgaaa ggttcgtcgt tctggcaccg gatcttcggg tagaccagtc
      961 gtgagagagt ttagccgcag atgttcgcag atgcaccagt tcagaaaacg atttagatgt
     1021 ttttgcacat caatgc
//
LOCUS       DATCGC010002271         1049 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_266050, whole genome shotgun sequence.
ACCESSION   DATCGC010002271 DATCGC010000000
VERSION     DATCGC010002271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1049)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1049)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1049
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_266050"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..786)
                     /locus_tag="VIJ87_21560"
     CDS             complement(<1..786)
                     /locus_tag="VIJ87_21560"
                     /inference="COORDINATES: protein motif:HMM:NF014553.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447001.1"
                     /translation="MSTAIKEADVRDFPRRVEEVEQSEKNQLFFNRELSLLEFHARVL
                     EEALDDRNPLLERLKFLSIFSSNLDEFFMIRVSGLKEESEQSVSVLSLDGLTPEQQLE
                     KLRERILKLVEQHAKCFSENILPQLKTEGLEVATFNSLTRYEQQSIEEYFNEKVFPIL
                     TPLAVDPSHPFPYISPSSLNIGLMVKAPEGKSVELDNTHSEPRFVRIKVPSVVPRLVP
                     VGLSGSKFVLLEDVIEANVAKLFPGMEPGPCHRFRVTRDADIEI"
BASE COUNT          269 a          258 c          241 g          281 t
ORIGIN      
        1 tatctcgata tcagcatcgc gcgtaactcg aaaccgatga caaggcccag gctccatccc
       61 tggaaacaac ttagctacat ttgcttcgat cacatcttcg agcagcacaa acttcgatcc
      121 cgataatcca accggaacta accgtgggac taccgagggc acctttatcc gaacaaagcg
      181 cggctctgaa tgtgtgttat caagctcgac tgacttacct tcaggtgcct tgaccatcaa
      241 accaatattg agactcgacg gcgagatata cggaaacgga tgacttggat cgaccgcaag
      301 tggcgtcaga atcggaaaga ctttctcatt gaagtactct tcaatacttt gctgttcata
      361 tctcgtcagt gaattgaatg tggcaacttc aagtccttcc gtcttgagct gcggcagaat
      421 gttttcagag aaacactttg cgtgttgttc aaccagcttc agaattcgct cacgcagttt
      481 ctctaattgt tgctcaggcg tgagaccgtc cagcgacaac acagacacgg attgctccga
      541 ctcctctttg agtccggaaa ctcgaatcat aaagaactca tccagattcg aagagaagat
      601 agaaagaaac ttcaagcgct cgagcagtgg atttcgatca tcgagcgcct cttcaagaac
      661 ccgagcgtga aactccaaca gactgagctc tcgattgaag aagagttggt tcttctcgga
      721 ttgttcaacc tcttcgactc gtcggggaaa gtcgcggaca tctgcttctt tgatggctgt
      781 tgacatagtt tctttggctc actcatctga gaatggcttt gagccgctcc caattcctga
      841 cacagagaga gtatgcccgg gaagaatttg gcaagactcg ttccaagtac cgatacgagt
      901 ccaatggtta gctatccgtt gcttttcacc ggtttaccat tgtgtttcga atcgaattcg
      961 attctgtcct gtatggattc aatgctatcc gcattatttc ttaggagggt tgtcgtaggt
     1021 ggagtgagcg ttgacgctga tgaattcat
//
LOCUS       DATCGC010002272         1018 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_397452, whole genome shotgun sequence.
ACCESSION   DATCGC010002272 DATCGC010000000
VERSION     DATCGC010002272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1018)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1018)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1018
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_397452"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(249..623)
                     /locus_tag="VIJ87_21565"
     CDS             complement(249..623)
                     /locus_tag="VIJ87_21565"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5447002.1"
                     /translation="MPTRVLLVEDDILTRRNTAIYLRRAQLEVDEAANGEEAMHLITS
                     IDKYDVLISDLRMTGVTDGLDVIACQQRISPGTPCILVTAFGSAQVQKRAEDLAVTYL
                     EKPVSLSELLNKVTASANRNTP"
     gene            617..895
                     /locus_tag="VIJ87_21570"
     CDS             617..895
                     /locus_tag="VIJ87_21570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447003.1"
                     /translation="MALRGRSRELNRVNCIEFNLAGQEAQSARLKLKDKISLDESMVS
                     TFWMINALARLISHSGIITADDFKVQLDEAPKSFAMTNDLRKRDGVLF"
BASE COUNT          250 a          226 c          286 g          256 t
ORIGIN      
        1 tgaaagcgct cctcgctctg acggagccgc tcggtggtta aatcatgacc ggagttctgc
       61 gacgcgggta tttctacctt ggattgacga gcggaaggaa accatctcgt gaccatttcc
      121 cgaattttca gcatcggtga aattggcttt tctgaaatag cggagttttc gggagacatg
      181 ttattgattt aactcgccaa accgacgaga aaatgaattt acatctccac cgctgatgat
      241 tacacgcgtt acggtgtgtt gcgatttgcc gaagccgtaa ctttgttcag tagttctgag
      301 agggaaacgg gcttttctag gtaagtgaca gcgaggtctt ccgcccgttt ttgcacctgg
      361 gctgagccga acgcggtaac aagaatacag ggagtaccgg gagagattcg ctgctggcag
      421 gcgataacgt ccagcccatc cgtcacgcca gtcatgcgta gatcagagat gagaacatcg
      481 tatttatcta tcgaagtaat gagatgcatc gcttcttcgc cattcgcggc ctcatccact
      541 tcgagctgcg cacgccgaag atagatcgcg gtgttcctgc gggtaaggat gtcgtcttcg
      601 acaaggagaa ctcgggttgg cattgcgagg gcgttcacgc gaactgaaca gggtgaactg
      661 tattgaattt aatttggccg gtcaagaggc gcaatcagcg cggctgaaat taaaagacaa
      721 aatcagcctg gacgagtcta tggtgagcac gttttggatg atcaatgcgt tggcaaggtt
      781 gatttctcac tcgggcatca tcaccgcgga cgatttcaaa gtccagttag atgaagcgcc
      841 taaatcgttc gctatgacaa acgacttacg taaacgcgac ggcgttttgt tttagaaggg
      901 tggttctgga gtatcagagt tcctgaagga tctcgagaag caattatgtc gtgctcacag
      961 atggcatcag cgatttcgtt gaggggcggt agtcgcctaa ataatttcac agcggggg
//
LOCUS       DATCGC010002273         1127 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_164254, whole genome shotgun sequence.
ACCESSION   DATCGC010002273 DATCGC010000000
VERSION     DATCGC010002273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1127)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1127)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1127
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164254"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            225..>1127
                     /locus_tag="VIJ87_21575"
     CDS             225..>1127
                     /locus_tag="VIJ87_21575"
                     /inference="COORDINATES: protein motif:HMM:NF014757.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase family protein"
                     /protein_id="HEY5447004.1"
                     /translation="MSTQGSGSKTIETIAVIGAGTMGHGIAQVAGGCGYRVILSDVDR
                     ESLSRGIRTIEKNLAKGIQLGKLTEYDSERTLQQIRGTTILGECAAADLIIEAAPEKL
                     DLKRDLLHKLEVASDRPFIFASNTSSLSITEIARASKRPENVVGMHFFNPVHLMRLVE
                     VVVGNETSQSTVETVSNVGRKLRKEPIIVKDVPGFASSRLGVALGLEAMRMLEQGVAS
                     AQDIDKAMELGYNHPMGPLKLTDLVGLDVRLNIADYLHRELGSETFRPPEVLRRMVSE
                     GKLGKKTGVGFYDWNNDNENLRRAQ"
BASE COUNT          284 a          243 c          310 g          290 t
ORIGIN      
        1 ataatgacta catccttttt gattgtctcg ttatccatta ctaaacgtct gttctccttc
       61 gagcgagttg gcgtacaact tgagtattga cagggaaata attggcattg gccgcaaaga
      121 gtatagcctt ttcggttgag cgtatagtat aactacgggt acttacggta gtcgaaccgg
      181 agctttggcg ttctaactga tcgaggctac ggttcctttg agtgatgagt acccaaggga
      241 gcggttcgaa aacgattgaa acgatcgccg tgattggcgc aggcacgatg ggacatggta
      301 tcgcccaggt tgccggcgga tgcggttatc gagtcatact cagtgacgtt gatcgtgagt
      361 ctctttcacg tggcatacga accattgaaa agaatcttgc caagggtatt caactgggta
      421 agttgaccga atacgattcc gaacgaactc tgcaacagat ccgcggaact acgattttag
      481 gagaatgcgc cgccgccgat ctaatcattg aggccgctcc tgaaaagctg gatctgaagc
      541 gggatttact tcataagctc gaggtcgcat ctgaccgtcc attcattttt gcgagcaata
      601 cttcctcgct atcgatcact gagatagcac gcgcttcgaa gcgtccggag aacgtcgttg
      661 gaatgcattt tttcaacccg gtgcacttaa tgcgtttggt ggaagttgtg gttggcaatg
      721 agacgagtca gagtactgtt gagacggtct ctaacgttgg tcgtaagctg cgtaaagaac
      781 cgatcattgt caaagacgtt ccagggtttg cttcaagccg tctgggtgta gcgctcggtc
      841 tcgaagcaat gaggatgttg gaacaaggtg tcgccagcgc acaggatatc gacaaggcga
      901 tggaacttgg ctacaaccac cctatgggtc ccttgaagtt gaccgatctc gtagggctcg
      961 atgtaagact gaatattgct gattaccttc atcgtgaact cggcagcgaa acgttccgac
     1021 cgcctgaggt tttgcgtagg atggttagtg aaggcaaact aggaaagaaa acaggagttg
     1081 gattttacga ttggaataac gacaacgaga atttgcgtcg agcgcag
//
LOCUS       DATCGC010002274         1617 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_164255, whole genome shotgun sequence.
ACCESSION   DATCGC010002274 DATCGC010000000
VERSION     DATCGC010002274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1617)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1617
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164255"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..332)
                     /locus_tag="VIJ87_21580"
     CDS             complement(<1..332)
                     /locus_tag="VIJ87_21580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447005.1"
                     /translation="MKVCLFLLIAALCVLSFCPAVQQTLSAPAPTVQPVADELEDSDA
                     FFQRATTRPAPKKNYSREVSALLARMTLEEKVGQMTQLEIGMITKGEGDNIQIDAEKL
                     EKAVVKYGS"
     gene            complement(436..954)
                     /locus_tag="VIJ87_21585"
     CDS             complement(436..954)
                     /locus_tag="VIJ87_21585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447006.1"
                     /translation="MKTFKTTLLILVVTLAGVVSATPARWKTATAQELRKLIPTRAPV
                     VKENIETEFRTASGVTDGKGKFIAGVVMITAGYAAEGKYSHFFVTQVELQLGDITLQP
                     GEYVFGYQRTNNEAIRVTFYKASSGDSVGDVEAHVNRKKNLVTSLLISPAVHGKGTIQ
                     VGRFLFDYKVSD"
     gene            1014..>1617
                     /locus_tag="VIJ87_21590"
     CDS             1014..>1617
                     /locus_tag="VIJ87_21590"
                     /inference="COORDINATES: protein motif:HMM:NF019135.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HEY5447007.1"
                     /translation="MLKGQSKLNVLAIVMIVLPCLVSTAYALDPHKALTEFGTQVWLT
                     ENGLPQNTVQAVVQTRDGYIWIGTQEGLAKFNGTGFVVFDKENTPQLKSNDIRALLED
                     RNGALWISTSYGLVRMQGGKFTSFTSNEGLPDNSVGPVAEASNGTIWIATSSGLARYV
                     NNSFSAFSVGVDDIQALLVDSSGVLWVGSAVGVSRVNVDLK"
BASE COUNT          384 a          385 c          402 g          446 t
ORIGIN      
        1 gaaccatatt tcacaactgc tttctcaagt ttctccgcgt cgatttgaat gttgtcgcct
       61 tcgcccttgg taatcattcc gatctcgagt tgagtcatct gtccgacttt ttcttcgagc
      121 gtcatgcgcg cgagcagcgc cgagacttcg cgtgaatagt ttttctttgg ggcgggtcgc
      181 gtggttgctc gttggaagaa cgcgtcgcta tcttccagtt cgtcagcgac aggttgcaca
      241 gttggcgcag gggcgcttag agtttgttgt acagccggac aaaagctgag cacacagagc
      301 gcagcaatca aaagaaacag acagactttc atgttggttt ttcccttgtc gagacgaaat
      361 gaaggaaact gcgaagcaat tcttcgttag ataccctgaa ttttcaagtc tggagcatca
      421 ctttggactt cgagttcaat cggaaacttt gtagtcaaaa agaaatcgac caacctgtat
      481 cgttccttta ccgtgaactg ccgggcttat taatagcgaa gtaacgagat tctttttgcg
      541 gttgacgtgg gcttcgacgt ctccgaccga atcgccgctt gaggccttgt agaatgtgac
      601 ccggattgct tcattgttgg ttctctgata gccgaacaca tattctccgg gctgaagggt
      661 aatatcgccc agttgcaact cgacttgcgt cacaaaaaaa tgggagtact taccttcggc
      721 tgcatagccc gcagttatca taactacccc ggcgatgaat tttccttttc cgtctgttac
      781 tccggaggca gtacgaaact ctgtttcgat attctcctta actaccggcg cgcgagtcgg
      841 gattagttta cggagttcct gcgctgtagc tgttttccag cgcgctggtg ttgcagagac
      901 cacaccagcc aacgttacta cgagaatcaa caaggtggtc ttgaatgttt tcatggatta
      961 agcgttatcg attcaacatt gagtacctga gttaattaca ctactttcct aaaatgttaa
     1021 aggggcagtc aaagttaaac gttctagcga tcgtcatgat cgttctgcct tgcctcgttt
     1081 caacagcgta cgccctcgat cctcataaag ctctaaccga atttggcacc caggtttggc
     1141 tcacggagaa cggcttgcca caaaacacgg tgcaggctgt tgtccaaact cgggatggtt
     1201 atatttggat tggcacccag gaaggcctgg cgaaattcaa tggaaccggc tttgtcgtct
     1261 tcgataaaga aaatacacca caactcaaaa gcaacgatat ccgcgcgttg ctggaagatc
     1321 gcaatggagc attgtggatc agtacgtcgt atggcctggt gcgaatgcaa ggtggaaaat
     1381 ttacttcatt cacctcaaat gaaggtcttc ctgacaacag tgtcggaccg gtcgccgagg
     1441 cgtcaaacgg aacaatctgg attgcgactt cgtcaggact tgctcgttac gtcaacaatt
     1501 ccttctcggc attttcagtt ggtgttgacg acattcaagc gcttcttgtc gatagtagcg
     1561 gtgtcttgtg ggttggtagc gcagtcggtg tctcgcgagt caacgtagac ttgaaag
//
LOCUS       DATCGC010002275         1671 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_397465, whole genome shotgun sequence.
ACCESSION   DATCGC010002275 DATCGC010000000
VERSION     DATCGC010002275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1671
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_397465"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..555)
                     /locus_tag="VIJ87_21595"
     CDS             complement(<1..555)
                     /locus_tag="VIJ87_21595"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEY5447008.1"
                     /translation="MPPTLLGLLLVLCFVDPFIGDWDGIDYTILSLAGYPSSMALGRN
                     LFIFGNHTLFVVAKNLFNLQPEYAYLLFKYAVVVQAPLAIIACWVLARTVTRSLHTAT
                     VAALLLVCSPVFVLYGGQVMTDVPSVLLLEVALVVHFCGIQRKSLWLILAGAALMGLG
                     VNLRETIGFYAPWLVLAPFVCGWKV"
     gene            complement(635..1456)
                     /locus_tag="VIJ87_21600"
     CDS             complement(635..1456)
                     /locus_tag="VIJ87_21600"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY5447009.1"
                     /translation="MDNNDELRAHLEKNLGMLGHEVVVTGEREKALARNDLDEFDLVI
                     SDLSEAEINGQPIGDLQRKHLVTPTPHTSEPVIIKAFKMGAANYLRLPYNAEELREII
                     EQTLSYKLRYVDDPSVLPNVHEKIEFELPSDLALMNGVLEYLHERVSKLGLIQPERSN
                     LFIALDEAFVNAVKHGNKSDPKKLLRITAELSPKEACFTVEDEGEGFDVGEIPDPCDP
                     ANLFRTSGRGVLLIYNIMDEVEYNAQGNRVKMVKRPETPVEAQLVDPNTPEDKHV"
BASE COUNT          425 a          424 c          425 g          397 t
ORIGIN      
        1 cactttccat ccgcagacaa atggtgcgag aacaagccat ggagcgtaga agccgatggt
       61 ctctcgaagg tttacgccta aacccatcaa cgctgcgccg gccaatatca accaaagact
      121 ttttcgttga atcccacaga agtgaacaac gagtgctact tcgagtaaga gaaccgaagg
      181 aacgtcagtc attacctggc cgccatacag aacaaagact ggcgaacaaa caagcagtaa
      241 cgccgctaca gttgcggtgt ggagtgaacg agtaacagtt cgcgcgagca cccaacaggc
      301 aatgattgcg agtggtgcct gtacgacaac ggcatacttg aaaagaagat atgcatactc
      361 gggttggaga ttgaataagt tctttgcgac aacaaaaaga gtgtgattac caaagatgaa
      421 gaggttgcgg cctagcgcca ttgaggatgg atagccggcc agggaaagta tcgtgtagtc
      481 aatgccatcc caatctccga tgaacggatc tacaaaacac agcactagca acagtccgag
      541 taacgttggc ggcaaccacc atttccaggc ggaccaaaac gaagtaacgg aggaatccgc
      601 tccgcgctgc aagtcggtgt cttgagtttg ggtgctagac gtgtttgtct tcaggtgtgt
      661 ttggatcaac gagttgagct tcgaccggtg tttctggtcg tttcaccatc tttacgcggt
      721 taccctgcgc attgtactca acttcatcca tgatgttgta aatgagcagc actcctcgac
      781 ccgaggtgcg aaatagattg gcggggtcgc aagggtccgg aatctcacca acatcaaatc
      841 cctcgccttc gtcttcaacc gtgaagcaag cttctttggg cgacaactct gctgtaattc
      901 ttagaagctt ttttggatcg ctcttgtttc catgctttac agcgttaaca aaagcttcgt
      961 ccagggcgat gaagaggttt gagcgttccg gctggatcaa tcccaactta gatacgcgct
     1021 catggagata ctcaaggacg ccgttcatta acgccaggtc gctgggtaat tcaaactcta
     1081 tcttttcgtg cacattcgga agaaccgaag ggtcatcgac gtatcgcaac ttgtaagaaa
     1141 gggtctgctc gatgatttca cgtagctctt cggcgttgta aggcagccgg aggtaattgg
     1201 cggcgcccat tttgaaagct ttgattatta cgggttcgct tgtgtgaggg gttggagtca
     1261 ccagatgctt gcgttgcagg tctccgatgg gttgtccgtt gatctcagct tcactgaggt
     1321 cgctgataac caggtcaaac tcatccagat cattgcgcgc caacgccttc tcgcgctcac
     1381 cagtcacgac tacttcgtgt cctagcatgc caagattctt ttccaggtga gcacgcaact
     1441 catcgttatt gtccacgatg agtatccggc gtttgtccat ccagctccaa tctaatcgag
     1501 ttgtgaagga gagatcgcac cgcgcgagac aactttgacg acaacccgta cgaaatacca
     1561 acgcgctgcg ttcgaaatat atcagaaagg cgagaacagg cgacaggtca aaggctggcg
     1621 cgtttgccac aggtcatccc ttccctgcta cactacgctc ccttcggctc t
//
LOCUS       DATCGC010002276         1942 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_465856, whole genome shotgun sequence.
ACCESSION   DATCGC010002276 DATCGC010000000
VERSION     DATCGC010002276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1942)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1942)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1942
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_465856"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..296
                     /locus_tag="VIJ87_21605"
     CDS             <1..296
                     /locus_tag="VIJ87_21605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447010.1"
                     /translation="RVLVVAQDNGGAKDPARKDRLTWGVYRAERKQWATSDAERPDDQ
                     SNQLSWIASDSERAEDAGVRSDEDHIIGCQSFPLSSFSFFSGDDIHGTVLVRP"
     gene            517..1542
                     /gene="rfbB"
                     /locus_tag="VIJ87_21610"
     CDS             517..1542
                     /gene="rfbB"
                     /locus_tag="VIJ87_21610"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007846915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008460 - dTDP-glucose 4,6-dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HEY5447011.1"
                     /translation="MSKLFITGGAGFIGSAFVRLLLNERPDFELINFDALTYAGNLDN
                     LADLESGRHHFVRGDIAVRDDVLASLPESCDAIVNFAAESHVDRSIASAGEFLRTNIV
                     GTQVLLDAARERNVRRFLQVSTDEVMGSLKDDEETFFSEDSGFAPNSPYAASKASAEH
                     FVRAAHHTFGLDTVITRCGNNYGPRQFPEKFLPLTISNAMNDAPIPLYGDGKNVRDWI
                     YVDDHCRGILAALEKGASGGVYNIGARNERRNIEVLESLLEALAKPKSLIHFVKDRPG
                     HDRRYAIDPSLAENELGWKPVETWQSGLAKTIRWYQENGVWLERARSGAYRDYYKQQY
                     GTEVRTS"
     gene            1539..>1942
                     /locus_tag="VIJ87_21615"
     CDS             1539..>1942
                     /locus_tag="VIJ87_21615"
                     /inference="COORDINATES: protein motif:HMM:NF016228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar nucleotide-binding protein"
                     /protein_id="HEY5447012.1"
                     /translation="MKIFITGAGGLVGSALVEHCVANGDEVVAYDRASLDISDRTRVD
                     ELVSKASPEAIINCAAWTDVDGCERDVVRSDGANALGPENLARASRNVDALLITISTD
                     YVFDGTKEGFYTQRDNPNPLSVYAKSKLDGERR"
BASE COUNT          490 a          468 c          526 g          458 t
ORIGIN      
        1 gacgcgtctt agtcgtggcg caggacaacg gaggcgcaaa agaccctgcg aggaaagatc
       61 gattgacgtg gggtgtttat cgcgcggaaa ggaagcagtg ggcgacatca gacgcagagc
      121 ggcccgacga tcagagtaat cagctatcat ggatcgcgtc cgattccgag agagctgaag
      181 atgcaggtgt ccgatcagat gaggatcaca taatcgggtg tcagagtttt cctttatctt
      241 ctttctcgtt cttcagcgga gacgatatac atggcacggt tctcgttaga ccataggctg
      301 aacacatcac tgtttcgcct ggtgaccagt ttacaaagtt gtttgaagac ccttgcgatt
      361 cccaaatcaa gaatgcgcag gttatagcgg tgcctcagtt ctcaagcaac ggtcctccaa
      421 aacgaaacgc tcgccgtctt gacgtttcaa aatcaaaccc acgacaatcc aacaagaaac
      481 atgattcttg agctgtatta atgtgaaagg tctaaaatgt cgaaactctt catcacaggc
      541 ggtgctggat ttattggttc agctttcgtc cgactgctac taaacgaacg gccagacttc
      601 gagcttatca actttgatgc actcacttac gccggtaacc tcgacaacct tgccgacctt
      661 gaaagcggcc gtcaccattt tgtgcgtgga gacatcgctg ttcgagacga tgttctagca
      721 agcctgcctg aaagctgcga tgcgatcgtc aacttcgcag ccgagagtca cgtggatcgc
      781 agcatcgcct cagcaggcga attcctacgt accaatattg ttggtacgca agttctgctg
      841 gatgctgccc gcgaaagaaa cgtgaggcgc tttcttcaag tctcaactga cgaagttatg
      901 ggtagtttga aggacgatga agaaaccttc ttctcggaag attcaggctt tgcccccaac
      961 agtccttatg cagcgtcgaa agcgtctgca gaacatttcg tgcgcgctgc tcatcacaca
     1021 tttggtctcg acacagtgat cactcgttgc ggaaacaatt acggacctcg tcagtttccc
     1081 gaaaagtttt tacccctcac gatctcaaat gcgatgaacg atgctcccat tccgctttac
     1141 ggcgacggta agaatgtgcg cgactggatc tatgttgacg atcactgtcg cggaatactg
     1201 gccgcactcg aaaaaggcgc ttcgggtggc gtttacaata ttggtgctag aaacgaacga
     1261 cgaaatattg aagtcctcga gtctctactt gaggccttag ccaaaccgaa gtcgcttatt
     1321 catttcgtaa aagatcggcc gggtcacgat cgtcgctacg caattgatcc ttcgctcgcc
     1381 gagaacgagc ttggttggaa gccggtcgag acgtggcaat cgggacttgc gaagacgatc
     1441 cgttggtatc aagaaaacgg tgtatggctt gaacgggcgc ggagtggtgc ctaccgggat
     1501 tactacaagc agcaatacgg aacagaggta cggacaagtt gaagatattc atcactggtg
     1561 caggtggttt agttggaagc gccctggtcg agcactgtgt cgcgaatggt gacgaagttg
     1621 ttgcctacga cagggccagc ctcgacattt cagaccgtac ccgtgttgac gagttggttt
     1681 caaaagctag tccggaggca atcatcaact gtgcggcgtg gaccgatgtt gatggatgtg
     1741 agagagatgt agttcgatct gacggtgcga acgcactcgg gcctgagaac ttggcgcggg
     1801 cgagtagaaa tgtggatgcg ttattgatca ctatttccac agactacgtg tttgacggca
     1861 ccaaggaagg gttttacacg cagagggaca atcccaatcc gctaagtgtc tacgcgaaat
     1921 caaaattgga tggcgagcgg cg
//
LOCUS       DATCGC010002277         1433 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_498323, whole genome shotgun sequence.
ACCESSION   DATCGC010002277 DATCGC010000000
VERSION     DATCGC010002277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1433)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1433)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1433
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_498323"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            131..937
                     /locus_tag="VIJ87_21620"
     CDS             131..937
                     /locus_tag="VIJ87_21620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447013.1"
                     /translation="MPKPHRFSLFAQHNRGLLLDVVVFIANIFLMRMLSTYVITLFGQ
                     ANNNDPGAKLILILSALAMWILPAAGAVMKRWHFHRRLEAEHKALATDSGLAGCLFNP
                     LMYFCLNLVVMSAIVTGIGQELVGKKGMDNGAVFVPSIFLGLALTIFQTYLIYRYFSP
                     PKKPPTSGFLLSPESELLGDICFFLNMLLFQCAWNLLTLVPFGRVSGVFEFLGRLFFL
                     SFLALLVYFPPRMFYLAEDINRKRTWLTMFLANSPVIFKILIGTNPDKGW"
     gene            complement(1115..1261)
                     /locus_tag="VIJ87_21625"
     CDS             complement(1115..1261)
                     /locus_tag="VIJ87_21625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447014.1"
                     /translation="MNTEKCPVCDWAINDGGIKVTVGGKEITVCCDECVQKVEENPKQ
                     YAAA"
BASE COUNT          331 a          369 c          323 g          410 t
ORIGIN      
        1 aaaagcgatc cacgaaatca cacgaaataa caccaacgaa gtcccaagaa attagagttt
       61 tgaaacagtc tctgccgtcg gtgatattca acaagccaaa caatctgtct tcttgtagac
      121 ttctgcgctg atgccaaagc cccatcgctt cagcctcttc gcccagcaca atcgcggact
      181 gctgctcgac gtcgttgtct tcatcgcaaa catcttcctc atgcgcatgt tgagcacata
      241 cgtcataacc ctattcggcc aggcaaacaa caacgacccg ggcgcaaagc tcattttgat
      301 cttaagtgcg ctggcaatgt ggatcctgcc tgccgcaggc gcggtaatga agcgttggca
      361 ttttcatcgt cgacttgaag cggagcacaa ggcactggca acagattcag gattggccgg
      421 ctgcctgttc aacccgctca tgtatttctg tttgaatctc gtcgtgatgt cggcgattgt
      481 gacaggaatc gggcaggaac ttgtcggcaa aaaagggatg gacaatggag cagtcttcgt
      541 accttcgatt tttctcggcc tggcgttgac cattttccag acctatctga tttatcgata
      601 tttttcgcca cccaagaaac cgcctacatc tggatttctt ttgagcccgg aaagtgaact
      661 tctcggcgac atttgtttct ttctcaacat gctacttttc cagtgtgcct ggaacctgct
      721 gacgttggtg ccatttggtc gagtatcggg agtttttgaa ttcctgggca ggctcttctt
      781 cctttcgttt cttgccttgt tggtttactt cccgccacga atgttctacc tcgcagagga
      841 catcaatcgt aagagaacgt ggttgaccat gtttttggcg aactcacccg tcattttcaa
      901 gatcctgatt ggaacaaatc ccgacaaagg ctggtaaatc tcggatctca gaagtttacg
      961 atgttcgata tgcttcagct tgtcgttgaa cttagcaacc agcgtcctaa gctgaatcgc
     1021 gtgctttaaa ctgtggcgct ttgggtatca cccattcacg acaagacaga cgcatatcgg
     1081 acatcagaga ttctgagatc cgagattctt ttttttacgc cgctgcgtac tgcttcggat
     1141 tctcttctac tttttgcacg cattcatcac agcaaacagt gatttccttg ccaccaaccg
     1201 tgaccttgat accaccatcg ttgatcgccc aatcacacac gggacatttt tcggtattca
     1261 tcagcttctc tcctcgaatt aattattagc gactggaatt tcttcgtgtc gcacggatag
     1321 gagattagcg ctgggtgggc gatgcgcgct tccagattct tgctcgtttg atgtccgata
     1381 tgctttagag cctcttgcaa aaagtcgcgg aatctactgg tgatgaagtc agt
//
LOCUS       DATCGC010002278         1656 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_164394, whole genome shotgun sequence.
ACCESSION   DATCGC010002278 DATCGC010000000
VERSION     DATCGC010002278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1656)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1656)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1656
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164394"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1656
                     /locus_tag="VIJ87_21630"
     CDS             <1..>1656
                     /locus_tag="VIJ87_21630"
                     /inference="COORDINATES: protein motif:HMM:NF014759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="5'-3' exonuclease H3TH domain-containing
                     protein"
                     /protein_id="HEY5447015.1"
                     /translation="RAFYAPMQNRVAPLATSHGQVTQAVYIFTNMLIKLLREEKPDYI
                     AAIFESKEKTFRHETFADYKANREAMPEDLATQLPYIIRLCEAFNIPVINSPGYEADD
                     VIGTLAKQIAEQKLQVVIVSNDKDMCQLVRDPFIICMRQNSQVLKRKEPVPPIEWCNE
                     EWVEKKFGVTADKLVDLLGLMGDSVDNIPGAPGIGSKGAVQIIQQFGSIEAALAGWES
                     VKHKTYRESLRDNAALIRQSRELARIQQDIDVPLKLDEIKSRPPDRSATYQLFNELEF
                     AALSREYADAAEVKAATVETQRDYRLIQTKSALDNLVRTLFDAETIGIAIADTTPAAE
                     GQQECFTELETSQGIAFSTKAGSAAYVDLEKFSGGNAIETLREVFCNGLIEKSVHDLK
                     RATALLARFNVTLEGVKDDTSLAAYLLDPNRSKYELTDIAREALGSENGANPPADWTA
                     AAWQTASAADLTAQTAKVLHLRILDKKLETIYSEVELPLAPLLYQMEQAGLKVDPRVL
                     SDLSSFIGQELHKLTLKIYQLAGREFNIGSPKQVGEVLSELNI"
BASE COUNT          424 a          414 c          434 g          384 t
ORIGIN      
        1 tcgcgcgttt tatgcgccga tgcagaatcg agttgcgcca ctagcaactt cgcacggcca
       61 ggtcacccaa gccgtttaca tcttcacaaa catgctcatc aagctgcttc gtgaagagaa
      121 gccggactac attgccgcaa tcttcgaatc gaaagagaag acgtttcggc atgaaacctt
      181 cgcggactac aaagcaaatc gcgaagcgat gccagaggat cttgcgacac agctccctta
      241 cattattcga ctttgtgaag cgttcaatat tccggttatc aattcccctg gctacgaggc
      301 tgatgatgtt attgggacgc tggcgaagca gatcgccgaa cagaaactgc aagttgtcat
      361 cgtgtcgaac gacaaagaca tgtgccagct cgttcgcgat ccatttatta tttgcatgcg
      421 acagaactca caggtgctga agcgcaaaga accagtgccg ccaatcgagt ggtgtaatga
      481 agagtgggtt gagaagaagt ttggagttac tgccgacaag ttagtcgact tgctcgggtt
      541 gatgggtgac tccgttgaca acattcctgg cgctccgggc ataggttcga aaggtgcagt
      601 gcagatcatc cagcagtttg gttcgattga ggcggcctta gccggatggg agtcggtcaa
      661 acataagacc tatcgagagt cgttgcgtga taacgctgct cttatccggc agtcacgcga
      721 gctggcccgc attcagcaag acattgacgt acctctcaag cttgacgaga tcaagtcgcg
      781 tccgccggat cgttccgcta catatcaact ctttaacgaa ttagagtttg ctgccctatc
      841 gcgtgagtat gctgacgctg ctgaagtcaa agctgcgaca gttgagacac aacgagacta
      901 ccggttgatt caaactaagt cagccttgga taatctcgtg cgcactttgt ttgacgcaga
      961 gactattggc attgctatcg ccgacacaac acctgccgcc gaagggcaac aggagtgctt
     1021 caccgaactc gagacgtcgc agggcatcgc tttctcaacc aaggcaggct ctgcggcata
     1081 tgtcgatctc gagaagtttt caggcgggaa tgcgatagaa accttgcgcg aagtgttttg
     1141 taacggcctc atcgaaaagt cggtgcatga tttaaagcgc gcgaccgctt tgctggcacg
     1201 attcaatgtc acactcgaag gcgtaaaaga cgacacgagc cttgccgctt atctcctgga
     1261 tccaaatcgc agtaagtacg aattgactga catcgctcgt gaagcacttg gttcagagaa
     1321 tggagctaat ccgcctgctg actggacagc ggccgcatgg caaacagcaa gcgcagctga
     1381 tcttaccgca caaaccgcga aggttctgca cttgcggatc ctggataaaa aactcgaaac
     1441 gatttattcg gaggtcgagt tgccgttggc gccgctgctt tatcagatgg agcaggccgg
     1501 attgaaagtc gatccacgtg tgctatcaga tctctcgagt ttcattggtc aggaactaca
     1561 caaactgact ttgaagatct atcaactggc gggacgagag ttcaacatcg gttctcccaa
     1621 gcaggttggc gaagtacttt ctgaattgaa catcaa
//
LOCUS       DATCGC010002279         1946 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_164433, whole genome shotgun sequence.
ACCESSION   DATCGC010002279 DATCGC010000000
VERSION     DATCGC010002279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1946)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1946)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1946
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164433"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1662
                     /locus_tag="VIJ87_21635"
     CDS             <1..1662
                     /locus_tag="VIJ87_21635"
                     /inference="COORDINATES: protein motif:HMM:NF019229.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRTAC1 family protein"
                     /protein_id="HEY5447016.1"
                     /translation="PAVAGKPPGKGNVYMYDSIQLSKTTSSSRTSMNRSPLRRTSPLR
                     GGLIFICFALALVHLEAGTSSTNQPSSEPGTLTFTDVSAEAGFSGNSSSWAAAWGDYD
                     NDGNADVMTLAHIQDITNSISQLWHNNGDNTFTDVTIPAGLNPNNGDAHGAVWADFDK
                     DGYLDLYVSKGTPKADSNNYNELWKNNGDNTFTNVASSSRVTGRSHRNRGAYAIDYNL
                     DSELDIFATSFDTPNLLYRNDGGLQFVDVAREAGLLRSDIENRTAAWADFDQDGLMDV
                     LITKSSVLFKNRGDGTFVDVTAAAGITTSVNAQSGAWGDYDNDGDLDLYVTMWEPDGP
                     PILGSLYQNNGDGTFTDVTTKSGAINTAGALGATWGDYDNDGFLDLYIVNTEIGTTDP
                     NRLFRNNGDNTFTDVASIAGVGAKTGQGRGSDATFADYNNDGFLDLFVCNGAGSTVGP
                     YLLYRNNGNSKGWLEVVLIGQQSNRSGIGAKIRLRAGGRTQFREYTGQHYMSQNHIPV
                     HFGLGQATIIDSLSIQWPSGDRQTVRSIPANQVITITESAANQPR"
     gene            1691..1921
                     /locus_tag="VIJ87_21640"
     CDS             1691..1921
                     /locus_tag="VIJ87_21640"
                     /inference="COORDINATES: protein motif:HMM:NF012622.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0000272 - polysaccharide catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dockerin type I domain-containing protein"
                     /protein_id="HEY5447017.1"
                     /translation="MIVPGVNGASGSVDASATMTLRTGDVNADGVVNRTDLKEIKLNV
                     GRGLVNGDNFRDDITVDGKVNHGDTTLEKSKL"
BASE COUNT          510 a          469 c          528 g          439 t
ORIGIN      
        1 cctgcggtcg caggcaaacc cccggggaaa ggaaacgtct atatgtatga ttcgattcag
       61 ctctccaaga caacttcatc cagcagaact tcgatgaacc ggtcgccttt gcggcgcacg
      121 tcgccgttac gcggcggctt aatctttatc tgcttcgcgc ttgctctcgt ccatcttgag
      181 gcagggacca gttcgacgaa tcagccctca agcgagcctg gaactctgac attcacggat
      241 gtatcagctg aggccggctt ttctggaaac agctcgagct gggccgcagc ctggggcgat
      301 tacgacaatg acgggaatgc ggacgtaatg acgctggcgc atattcagga tattactaat
      361 tcgatttctc aactctggca caataacggt gacaacacct ttacagatgt aaccatcccg
      421 gcaggcctaa accctaacaa tggtgacgct catggcgctg tctgggccga ttttgataaa
      481 gatggttatc ttgatcttta cgtctctaag ggaactccaa aggccgactc taataattac
      541 aatgagttgt ggaagaacaa cggcgataac accttcacta acgtagcctc ttcctctcgc
      601 gtgacaggaa gaagtcatcg caatcgaggg gcttatgcca tagattataa tcttgattcc
      661 gagctggata tcttcgccac aagtttcgac acgccaaatc ttttataccg caacgatggc
      721 gggttgcagt ttgtcgatgt ggctcgggaa gcgggactat taaggagtga tatagaaaac
      781 cgtaccgccg cctgggcgga ttttgaccag gatgggctta tggatgtact tatcacgaag
      841 tccagcgtgt tattcaaaaa tcgtggtgac ggtacgtttg tcgacgtgac ggctgcagcg
      901 ggtataacca catcagtcaa tgctcagagc ggagcttggg gagactatga taatgatggt
      961 gacctcgatc tctatgttac catgtgggag ccagatggcc cgccgattct aggtagcctc
     1021 taccagaaca atggagatgg cacttttact gatgtcacca cgaaaagtgg ggccatcaat
     1081 acagctggtg cccttggagc aacttggggg gattacgaca atgatgggtt tctcgatcta
     1141 tacatcgtca acacagaaat aggaacaaca gatcccaatc ggctctttcg gaacaatgga
     1201 gataacacct tcactgacgt ggcctcgatt gccggcgtcg gagccaagac cggccagggg
     1261 agaggcagcg atgcgacatt tgctgattat aataatgacg gattcctgga tctctttgtc
     1321 tgcaacgggg cgggtagtac ggtcggacct taccttctct atcggaataa tgggaacagc
     1381 aaaggatggc ttgaggtagt gcttatagga caacagagca atcgaagtgg gattggtgcc
     1441 aaaattcgtc taagggcagg aggtagaaca caatttagag agtacaccgg acaacattat
     1501 atgtcacaga atcatattcc ggtccatttt ggcttaggac aggccaccat tatagattcg
     1561 ctgagcatcc aatggccgag cggggataga caaacagtgc gtagtatccc tgccaatcag
     1621 gttatcacaa taacagagtc cgcggcgaac caacccaggt gaaaggacag tctatgtatc
     1681 tgatattacc gtgatcgtgc ccggtgtgaa cggtgcctcg ggctctgtcg atgcttccgc
     1741 caccatgacc ttgcggaccg gcgacgtgaa cgccgacggg gtcgtcaaca ggacagacct
     1801 gaaggagatc aagctgaatg tgggccgggg cctggtgaac ggcgataact tccgcgacga
     1861 catcacagtc gacgggaagg tgaaccatgg cgacacgacc ttggagaaat caaagctgta
     1921 atcagaagtt cacgaaagga gcgcaa
//
LOCUS       DATCGC010002280         1004 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_430699, whole genome shotgun sequence.
ACCESSION   DATCGC010002280 DATCGC010000000
VERSION     DATCGC010002280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1004)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1004
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_430699"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..741)
                     /locus_tag="VIJ87_21645"
     CDS             complement(<1..741)
                     /locus_tag="VIJ87_21645"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY5447018.1"
                     /translation="MALTIAIFTFQSNSVFAQTNWPQWRGTDASGISSETGLPTEWSE
                     TKNVRWKAPIPGRGHSSPIVWGKRVFLTTSIEGPVVPGAEAVRHYRKGEEYKHPDSVG
                     ADHSYSLKLLCLDLDSGKLLWEKTVYEGTVYDNRHRKNTYASTTPVTDGKYVYISFEA
                     EGLYCYDFTGKQIWKSSLGRIAKGGMGHGTSPVLFGNLIILQCDQEYGEGSFIAAVDK
                     KTGKEVWRAARDQRRSWATPLLIRFGQRV"
BASE COUNT          229 a          252 c          271 g          252 t
ORIGIN      
        1 gactcgctga ccgaaacgaa ttaacagagg tgtggcccaa ctgcgacgtt ggtctcgcgc
       61 tgcacgccat acctccttac cagttttctt atcaaccgca gcgatgaaac ttccttcgcc
      121 gtattcctga tcacactgga gaataatgag gttgccaaaa aggactggcg atgttccgtg
      181 tcccattccc cctttggcta ttcgaccgag cgatgatttc cagatttgct taccggtgaa
      241 gtcgtagcag taaagacctt cagcttcaaa agagatgtaa acgtacttac cgtcagtgac
      301 gggtgttgtc gatgcgtagg tgttcttgcg atgacgatta tcgtaaacgg ttccttcgta
      361 gacagttttt tcccagagca attttcctga atccagatcg agacacagca gtttcagtga
      421 gtagctgtga tctgcaccaa cactgtcagg atgtttgtat tcttcgcctt tgcgatagtg
      481 ccggacggct tctgcaccag ggacgacagg gccttcaatg gatgtcgtca ggaagactcg
      541 tttgccccag acgatcggtg acgaatggcc acgacctgga attggcgcct tccaacgaac
      601 gtttttggtt tcgctccact cggtgggaag tccagtctcg gaagagatgc cgctggcgtc
      661 agtgccacgc cactgcggcc agttggtttg tgcgaacacc gaattacttt ggaaggtaaa
      721 gatcgctatg gttaaggcca tccacagatg acgtagatta ccaggatccg gaagagttgt
      781 attcaactgc ggtctgtgta gtcggtggat gactttcctc caattcctta acgtaacact
      841 aatgggcggg ctcttctgga ccgcaggcgt cctcgccagc aatcgtcacc actaaggtta
      901 ggtagggcaa tgttggcagg cgaggacgcc tgcggtccca gaagagcgcg cccgataaaa
      961 gggtagcttc taaagggagc ctatttatcg ggatgcgcga gttc
//
LOCUS       DATCGC010002281         1107 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_498484, whole genome shotgun sequence.
ACCESSION   DATCGC010002281 DATCGC010000000
VERSION     DATCGC010002281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1107)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1107)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1107
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_498484"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            158..922
                     /locus_tag="VIJ87_21650"
     CDS             158..922
                     /locus_tag="VIJ87_21650"
                     /inference="COORDINATES: protein motif:HMM:NF015679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HEY5447019.1"
                     /translation="MELPSGLRVCNHLTGILLLLVASVCLISTPLTLTAQEKPQPLTR
                     QEKKEAERRLSDIGYRTGPVDGLLDPASQSALVAFQKWEGRAITGQLTLDELNAIRAS
                     SGPHARETGYEHVEVDLDRQVLLLINENDGVRVFPVSTGSGQPFIDEGQQSVAYTPRG
                     RFIVYEKVMGWEKGPLGSLYYPNYISGGVAIHGSRNVPIQPVSHGCIRLPVFAAREVS
                     KALTLGTIVLVYDKLSFVSAKDWVKNPKLKPTADIE"
BASE COUNT          276 a          276 c          283 g          272 t
ORIGIN      
        1 caccgggcta aagccacggt gagaatgaga ggaagttcgc gaggactcta cgcctgctca
       61 aaatgaacca gtaccaccct tagacaatac tcgctgtgaa cgttgttctt tggtaagttg
      121 tctgtcaaat agtggtgtcg agaggtttag taaccccgtg gaactaccat caggtttacg
      181 agtttgtaat catctgaccg gaatactgct gctcctggtg gcttcagtct gtctgatttc
      241 aaccccactg actctcacgg ctcaggaaaa gccgcaacca ctgacgcgac aagaaaagaa
      301 agaagccgaa cgccggctct ccgacattgg ataccggaca ggccccgtcg atggtctatt
      361 agatcccgct tctcagtccg cactagttgc gtttcaaaag tgggaaggcc gagcgattac
      421 cggccaactc acactcgatg aacttaacgc gattcgcgca agctcgggtc cgcacgccag
      481 ggaaactggt tatgagcacg tcgaggttga tctcgatcgt caggtgcttc tgttaattaa
      541 cgagaacgat ggcgtcagag tctttccggt ttcgacaggg agtggtcagc catttatcga
      601 cgagggccaa cagagcgttg cttacactcc gcgtggccgc ttcattgttt atgaaaaagt
      661 catgggttgg gaaaagggtc cactgggatc gttgtattac cccaactaca tcagcggcgg
      721 cgtagcgatc catggaagtc gcaacgtccc gattcaacca gtgagtcatg gctgtatccg
      781 actaccagtt ttcgccgctc gcgaagtgag caaagcacta acgttgggaa cgattgtgct
      841 ggtctacgat aaactctcat ttgtttctgc gaaggactgg gttaaaaatc ccaagcttaa
      901 accgaccgcc gatattgaat agttcgttcg tgttatttcg tgtgatttcg tggattgctt
      961 tctcggacgc gtaacaggcg atccacgaaa tagcacgaac aagaaaacaa cagcaactcg
     1021 ggtcttgata cagtctctac cgtccgtggg attcgcgact ttttgcgcaa ggtaataact
     1081 tcaaatgaag gctctgctac ttctttt
//
LOCUS       DATCGC010002282         2509 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_397558, whole genome shotgun sequence.
ACCESSION   DATCGC010002282 DATCGC010000000
VERSION     DATCGC010002282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2509
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_397558"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..199)
                     /locus_tag="VIJ87_21655"
     CDS             complement(<1..199)
                     /locus_tag="VIJ87_21655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447020.1"
                     /translation="MKLTIFGPNLRDQSKGVFIVHAADCKDCKKLKHEEQYTGDFETR
                     ADAAELMYGDFVTGEAEGMTIE"
     gene            complement(196..492)
                     /locus_tag="VIJ87_21660"
     CDS             complement(196..492)
                     /locus_tag="VIJ87_21660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447021.1"
                     /translation="MKIDSKWVIWFKKKNVYLVDVPPTGFKSVRNHEKATRFESIEDV
                     RAYAGSRGVFVYQPVLIHFDVKQTPMERALAMMPKKLNVKPEPTYKPNPYLQDL"
     gene            complement(640..921)
                     /locus_tag="VIJ87_21665"
     CDS             complement(640..921)
                     /locus_tag="VIJ87_21665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447022.1"
                     /translation="MNEINETVVARLQKAIGELLNAGWTTGAIRDALSKQASFGKYDG
                     CTPIAIKLMADATCKTMSAEIRKVDNEIARLAVASLKRDFPDIAKYFKA"
     gene            complement(953..1108)
                     /locus_tag="VIJ87_21670"
     CDS             complement(953..1108)
                     /locus_tag="VIJ87_21670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447023.1"
                     /translation="MNEYWNHPPEDPAEPPECCGEFMDVTDEGACVCKTCGKRIEPEK
                     YEAPDLS"
     gene            complement(1105..1350)
                     /locus_tag="VIJ87_21675"
     CDS             complement(1105..1350)
                     /locus_tag="VIJ87_21675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447024.1"
                     /translation="MKRNTWTKQNRVIDENGTPWDQFVNSDGTLIKRESRDCIGENGR
                     LQVGCTPMVNYARVAAPNEWFYTLRDLYAYQLKTTKI"
     gene            complement(1382..1582)
                     /locus_tag="VIJ87_21680"
     CDS             complement(1382..1582)
                     /locus_tag="VIJ87_21680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447025.1"
                     /translation="MNENKYRRVQRKEDGEWFTLELRDIFIQTDNQARELVAHFTSTQ
                     GGEYRTQFKHGRRWYTVPLNLS"
     gene            complement(1706..>2509)
                     /locus_tag="VIJ87_21685"
     CDS             complement(1706..>2509)
                     /locus_tag="VIJ87_21685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447026.1"
                     /translation="CRAGWLQVRVCPFCGSQNYHLGFNLSDKFFACWKCRWHPVWETL
                     LKLGVSSATIREFLHDYELGKEPEKAEWSGRLKEPGGRGPLQRCHRDYLKRRGFDPEE
                     IQRLWQVEGIGIDARLAWRIYIPILSKRVRVSWTTRAIGERATRRYLSAPQTEASINL
                     KHVIYGADWCRHAVVIVEGPIDAWAIGPGAGALFGLAWTSEQVKTLASFPRRYICLDS
                     SSDAQARARELADLLACFSGVTENIVIDAKDPAESSKKELRLIRKVAGL"
BASE COUNT          543 a          699 c          583 g          684 t
ORIGIN      
        1 gttcgatagt catcccttca gcttcgcccg taacaaagtc tccatacatc aattcggctg
       61 cgtctgcccg agtctcgaag tctccagtat attgctcttc gtgctttagt tttttgcagt
      121 ccttgcaatc agcagcgtgg acaataaaga cgcctttgga ttggtcccgc aaattaggtc
      181 cgaaaattgt cagtttcata aatcttgcaa gtaggggttg ggtttgtagg tcggttcggg
      241 cttgacgttg agctttttgg gcatcatggc gagcgctcgt tccatcggag tttgctttac
      301 gtcgaagtga atcaagaccg gctggtaaac gaagactccc cgactaccgg cgtaggcgcg
      361 cacgtcttcg atactttcga agcgagttgc cttctcgtgg ttgcgcacag acttgaatcc
      421 agtcggcgga acgtccacta aatacacgtt tttcttctta aaccaaatta cccatttgct
      481 atcaattttc atactggtat atcgacgccc tgtggaaata ctttagctca aagttttagt
      541 atcgtctttg caatcgttga agatttgctt tgcgagctct cgaccgttga gagtaaggac
      601 gattccagta ttatcgtcag ccattaggga tactttagct caagctttga aatactttgc
      661 gatatcggga aagtctcgct tgagcgacgc tacagcgagc cgagcaatct cattatcaac
      721 tttgcgaatc tccgcgctca tcgtcttgca agttgcgtca gccataagct taatcgctat
      781 gggcgtgcaa ccgtcgtatt tcccgaaaga cgcttgcttg ctcaaagcgt ctcgaatcgc
      841 gcccgtagtc cagccggcat ttagaagctc gccgattgct ttttgcagtc tcgctaccac
      901 cgtttcattt atctcgttca tactagagtt atcgtcagcc cttagggata ctttagctca
      961 aatcgggagc ttcgtatttc tctggctcga ttcgcttgcc gcacgtcttg caaacacaag
     1021 ctccttcgtc agttacgtcc ataaactcgc cgcaacattc cggcggctca gcggggtctt
     1081 cgggtgggtg attccagtat tcgttcatat ttttgttgtc ttgagttgat acgcatacaa
     1141 gtcgcgcaac gtataaaacc attcattcgg cgctgcgacc cgagcgtaat tgaccatcgg
     1201 agtgcatccg acttgcaacc ggccgttttc gccgatacaa tcccggctct cgcgcttaat
     1261 caacgtcccg tcgctattca caaactggtc ccagggagtg ccgttctcgt caatcactcg
     1321 attttgtttt gtccacgtat ttcgtttcat accagtatta tcgtcagccc ttagggatac
     1381 tttagctcaa gttcaaaggc accgtatacc aacgccttcc gtgtttgaat tgagtccgat
     1441 attccccgcc ttgcgttgac gtaaagtgag cgactagctc ccgcgcttga ttgtcagttt
     1501 ggataaagat atctcgcaat tctaacgtga accattcgcc gtcttctttg cgttgcactc
     1561 ttcgatattt gttctcgttc atactcccct aatagcaagc tcaatgccac tactgaatta
     1621 tctctaactc gttgctctta aactaaaccc taaatcgact cttttccact actgtctcaa
     1681 aagagaaaga cagtgtctca tttctttaca gtccagcaac tttccgaatc aagcgaagct
     1741 ctttcttcga agactccgcc gggtctttcg cgtcaattac gatattctcc gttactccgg
     1801 agaagcaagc gagcaagtcc gccagctccc gcgcccgcgc ttgagcgtcg ctcgacgagt
     1861 ccaggcagat gtagcgtctc gggaagctgg cgagcgtctt aacttgctcg ctcgtccagg
     1921 cgagcccaaa gagcgctcca gcgccgggac cgatagccca agcgtctatc gggccctcga
     1981 cgattacgac ggcgtggcgg caccaatccg ctccataaat gacgtgtttg agattgatac
     2041 tcgcttccgt ctgtggcgca gacaagtatc gtctcgtcgc tcgctccccg attgcgcgag
     2101 ttgtccagct gacgcggact cgcttgctca atatcggaat atagattcgc caagcgagtc
     2161 gagcgtctat cccgattccc tcgacttgcc agaggcgctg aatctcttcg gggtcaaatc
     2221 cacgacgctt gagatagtcc cggtggcagc gttgcaacgg gccgcgccct cccggttctt
     2281 tcaatcgccc agaccactcc gctttctccg gctctttccc tagctcgtag tcgtggagaa
     2341 actctcggat agttgctgac gagactccga gcttgagcaa cgtctcccag accgggtgcc
     2401 agcgacattt ccagcaagca aaaaacttgt cggagagatt gaacccgaga tggtaatttt
     2461 gcgaaccgca gaagggacaa actctgactt gcagccagcc ggcccggca
//
LOCUS       DATCGC010002283         1378 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_397583, whole genome shotgun sequence.
ACCESSION   DATCGC010002283 DATCGC010000000
VERSION     DATCGC010002283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1378)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1378)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1378
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_397583"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..188)
                     /locus_tag="VIJ87_21690"
     CDS             complement(<1..188)
                     /locus_tag="VIJ87_21690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447027.1"
                     /translation="MNKVETQILELEEELTNTEMRVDVEALDRIYADDIMVTAPIGIC
                     VNKEAVMSEVNTAAAKAVV"
     gene            311..>1378
                     /locus_tag="VIJ87_21695"
     CDS             311..>1378
                     /locus_tag="VIJ87_21695"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEY5447028.1"
                     /translation="MFWQTRSSYEFGPFRVEPRERRLLRAGEVVPLRPKVFDVLLVLV
                     RNSGHILSKDELMKLVWPNVAVEEGNLARSVSTLRGALGETRHEQTYIETIPWLGYRF
                     VASVKEVPDESRRPTIDSIAVLPFVNVANDAELDYLSDGITDSLINSLSRLTTLKVMS
                     RNSTFRYKGREAQARTVGRELNVEIVLCGRVVKHKDMLSVSVELIDARDESHVWGAQH
                     VRRANEIFALQELIAGEIAAQLCVQLTDEDTQRLSRRHTPNTEAYHHYLKGRYYFNKL
                     TFEGVQKAIDHLEQAVAKDSNYALAHAALGDAFNYIAKPTEASQAMTKALELDPMLGE
                     AHASLAFWKFVYDWDFEGAEKE"
BASE COUNT          349 a          341 c          352 g          336 t
ORIGIN      
        1 acgacagcct tggcggcagc tgtattcacc tcgctcatta cggcttcctt gttgacacag
       61 ataccaatgg gggccgttac catgatgtcg tcagcataaa tgcgatctag cgcttcgacg
      121 tcaactcgca tttcggtatt ggtaagttcc tcttcgagct caagtatttg tgtttccact
      181 ttgttcataa ttacatgttc tcctgattcg tcgattacta ttcgtacttg aaaagaggtt
      241 aagcccaacg tggtccagaa atccttccaa agttcggaaa aagttcggaa atgccgcgga
      301 aaagactccc atgttttggc agacgcgaag ctcatatgaa tttggcccct ttcgggttga
      361 gccgagagag cggcgtctcc tgcgcgctgg cgaggttgta cctttaagac caaaagtctt
      421 tgacgtacta ctcgtgttag tgcggaacag cggacacatt ctcagcaaag acgagttaat
      481 gaaactcgtt tggcccaacg tcgcggttga agaagggaac cttgcgcgga gcgtctcgac
      541 ccttcgaggc gctctcggtg agacccgtca cgaacagacg tatatcgaaa ccattccctg
      601 gcttggttac cgctttgtgg cgagcgtaaa ggaagtccct gatgaatcgc ggcgtccgac
      661 gattgactcg atcgctgtcc taccatttgt caatgtcgca aacgacgcag aacttgatta
      721 cctttcagac ggcatcacgg atagtttaat caatagtttg tcacgactga cgacactcaa
      781 ggtcatgtcg cgcaattcca cgtttcgtta caaaggtcgt gaagcgcagg cgcgaactgt
      841 cggtcgagag ctcaatgttg aaatcgtctt gtgcggtcgc gtagtcaaac acaaggacat
      901 gctctcagtc agtgttgaac ttattgacgc gcgcgacgaa agtcatgtct ggggtgcaca
      961 acatgttaga agagccaacg agatctttgc ccttcaggaa ctaatcgccg gcgagattgc
     1021 cgctcagttg tgtgtccagt taaccgatga agacacgcaa aggctttcaa ggaggcatac
     1081 cccgaacact gaggcgtatc accactatct gaaaggtcgc tactacttca acaaactaac
     1141 gtttgaggga gttcagaaag caatcgatca cctcgaacaa gcggtcgcga aggatagcaa
     1201 ctatgcgctc gcacatgcag cgcttggtga tgcgttcaat tacattgcca aacccaccga
     1261 agccagtcag gcaatgacta aagccttgga attggatcca atgctgggtg aggcccacgc
     1321 ctcactagcg ttttggaaat tcgtttacga ttgggatttt gagggagccg agaaagag
//
LOCUS       DATCGC010002284         1103 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_498583, whole genome shotgun sequence.
ACCESSION   DATCGC010002284 DATCGC010000000
VERSION     DATCGC010002284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1103)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1103)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1103
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_498583"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1103)
                     /locus_tag="VIJ87_21700"
     CDS             complement(<1..>1103)
                     /locus_tag="VIJ87_21700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447029.1"
                     /translation="NLPVSQFYHVSVDMDTPYHVYGGLQDNSSWIGDSSYPGGITNSR
                     WENVYGGDGFWAFADTADPDYIYAESQGGEMSRINRKTLESRNIKPLPQYKEGKLRFN
                     WNTPIHLSPTQKGTLYIGSQFLFRSRDHGQTWERISSDLTTNDAEKQKQEQSGGITVD
                     NSSAEMHTTIFSICESPKDSNLIWVGTDDGNVQLTRDGGKNWKNLTPNLKGLPRNAWV
                     SSIDAGHFDAGTAYATFDLHTFGDMRPYVYKTTDFGNTWTQLIGPTGDVKGYAHVVKE
                     DIVNRNLLFVGTELGLWVSLDGGTQWAQYKGGEFPNVAVRDLAIHPRDKDLIIATHGR
                     GIWIIDDITPLRSLTAELLAKDAAFIEARPTVQR"
BASE COUNT          259 a          279 c          269 g          296 t
ORIGIN      
        1 cgctggacag tcggtctcgc ttcaatgaat gccgcatcct tggcaagcaa ctccgccgtc
       61 agtgaacgta gcggcgtaat gtcatcgata atccagatgc ctctaccgtg ggtcgcgatg
      121 atcagatctt tgtcacgcgg atggatcgcc aggtcacgta cagcaacatt aggaaactcg
      181 ccgcctttgt actgcgccca ctgcgtgcca ccatcaagtg aaacccagag gcccagttca
      241 gtaccaacaa acaacaggtt tctgttgacg atgtcttctt ttacgacatg agcatagcct
      301 tttacatcac cggttggtcc tatgagttga gtccaggtat taccaaagtc cgtagttttg
      361 tagacataag gtcgcatgtc gccaaacgtg tgtagatcaa acgtcgcgta tgcagtacca
      421 gcatcaaaat ggcctgcgtc tatcgaagag acccacgcgt tccggggcaa gcccttgagg
      481 ttgggtgtca aattcttcca gttttttccg ccatctcgtg tcaattgcac gtttccgtca
      541 tccgtgccca cccaaatcaa atttgaatct ttgggcgact cacagattga aaagatcgtg
      601 gtatgcattt cagctgatga attgtcgacc gtgatacctc ctgattgttc ctgcttttgt
      661 ttctccgcat cgttggtggt tagatcagac gaaatgcgct cccatgtttg accgtggtca
      721 cgagagcgaa ataagaactg agatccgatg tagagcgttc ctttttgagt tggactgagg
      781 tgaattggag tattccaatt aaagcgcaac tttccttctt tgtattgagg tagcggtttg
      841 atgttgcgac tttcaagcgt cttgcgatta atccgtgaca tttcgccgcc ttgagactcg
      901 gcgtagatgt aatccggatc tgcggtgtca gcaaatgccc aaaagccgtc gccgccatat
      961 acattctccc agcggctgtt ggtaatgccg cccggataag atgaatcacc tatccatgaa
     1021 ctgttgtcct ggagacctcc gtaaacgtga taaggcgtgt ccatatccac actgacatga
     1081 tagaactgcg acaccgggag gtt
//
LOCUS       DATCGC010002285         1044 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_164664, whole genome shotgun sequence.
ACCESSION   DATCGC010002285 DATCGC010000000
VERSION     DATCGC010002285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1044
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164664"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1044
                     /locus_tag="VIJ87_21705"
     CDS             <1..>1044
                     /locus_tag="VIJ87_21705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447030.1"
                     /translation="GTTENKRNRDFLGYFDAIKAAAKAEGKNEAKAITAACQMLGIST
                     TDYRAARTAAKAQQKQVQIATAQRLREKGWSHNNIAIKMFGNPKQESTVRSLLADNAK
                     DKANALENIAKMLQDGVSAKRFIDIGTGVEQHLGISADRLRVAVAMLKEKGYRVHKVQ
                     EDQLGTAPGNKTTIKVLAPPGTTYKDVNSQRHLIQQLDALGTFSKDNGKSILGVKPPL
                     SISSKRIGINYDKDGGGAADGVIYVRPGVKDLSLGESHYAQVRIMVDGTHFLKGMAVY
                     KDDLPPGVDLQFNTNKSSTGNKLDAMKELKRTPDGEIDMDNPFGAQLKLNGRGQITDP
                     VTGKVTSAMNILN"
BASE COUNT          294 a          257 c          279 g          214 t
ORIGIN      
        1 cggaaccacg gagaacaagc gaaataggga ctttctgggc tatttcgatg ccattaaggc
       61 ggctgcgaag gctgagggca agaatgaggc caaggcgatc acggcagcct gtcagatgct
      121 cggaatcagt accaccgact atcgtgcagc tagaaccgca gccaaggctc agcagaagca
      181 agttcaaatt gcaactgctc agagactgcg cgaaaagggt tggtcgcata acaacatcgc
      241 catcaagatg tttggcaacc cgaagcagga atcgaccgtc cgtagccttc tggcagacaa
      301 cgccaaggat aaggcaaacg cgctagagaa catcgccaag atgcttcagg acggtgtttc
      361 ggcaaagagg tttatcgaca ttggtactgg tgtggaacaa cacctcggta tcagtgccga
      421 taggcttcgt gtcgctgtcg ctatgctcaa ggagaagggt taccgtgtcc acaaggtgca
      481 ggaggatcag cttggcactg cgccaggcaa caagaccacg atcaaggtct tggcacctcc
      541 tggaacaacc tacaaggacg taaactctca acgacacctg attcagcagc tagatgctct
      601 tggtactttc tccaaggaca acggtaagtc gattctgggc gtcaagcctc ctttgtcgat
      661 ctcttccaag agaatcggta tcaattatga caaagacggt ggtggtgcag cagatggtgt
      721 catttatgtt cgacctggtg tgaaagatct ctctcttggg gaatctcact atgcacaagt
      781 tcgaatcatg gttgacggca cccatttcct caaaggaatg gcagtttaca aggacgactt
      841 accaccgggt gtagaccttc aattcaacac aaacaagtca agcacgggta acaagcttga
      901 tgcgatgaag gaactgaagc gaacacccga tggcgagatt gacatggaca acccatttgg
      961 cgctcagctg aagttgaatg ggcgtggaca gatcactgac cctgtaacgg gcaaggtcac
     1021 ctcagcaatg aacatcctca atga
//
LOCUS       DATCGC010002286         1191 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_397696, whole genome shotgun sequence.
ACCESSION   DATCGC010002286 DATCGC010000000
VERSION     DATCGC010002286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1191
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_397696"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..240
                     /locus_tag="VIJ87_21710"
     CDS             <1..240
                     /locus_tag="VIJ87_21710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447031.1"
                     /translation="LHAMAVMGVTVLQDGEPIGSVVNSKTVSVEVQNTAESTTVATVS
                     QAATEVAVPTFIANVVVSPTAPAFPFEGQIWIDVS"
     gene            237..434
                     /locus_tag="VIJ87_21715"
     CDS             237..434
                     /locus_tag="VIJ87_21715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447032.1"
                     /translation="MTQGIPDLTGLEVQEHVVLEKFDGEAAPENLVERLHLLNGKITK
                     WERIENGEVVEESDTYTGGDE"
     gene            434..814
                     /locus_tag="VIJ87_21720"
     CDS             434..814
                     /locus_tag="VIJ87_21720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447033.1"
                     /translation="MPQTDAGRNLMVQATIGASVTFFNNANAFIGVGDSTTAFSAAHT
                     DLQAATNKLRKAMDATFPSGGSNVITFRSTFATTDANFAWQEWGVFNASSAGTMLNRK
                     VESLGTKTSAQTWQFTVTLTWTTA"
     gene            932..>1191
                     /locus_tag="VIJ87_21725"
     CDS             932..>1191
                     /locus_tag="VIJ87_21725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447034.1"
                     /translation="MADNLSVPVASGNATLATEDRAAGGVHWQKVEVSGESLAVTNGS
                     LTTSTSTSAASVANMGNVTFALFGTHAGFTVVFEASPDGGTT"
BASE COUNT          314 a          280 c          306 g          291 t
ORIGIN      
        1 ttacacgcta tggccgtgat gggggtaacc gtactacagg atggagagcc aattggctct
       61 gtcgtcaact caaagacggt aagcgttgaa gtgcagaata ccgccgaatc cacgaccgta
      121 gcaactgtga gccaggcggc gacagaggtc gcggtaccta catttattgc taatgtggta
      181 gtcagtccga ctgccccagc atttcccttt gagggacaga tttggattga tgtatcatga
      241 cacaaggaat accagattta actggactag aggttcaaga acacgtagtt ctagaaaagt
      301 tcgacggtga agcagcaccc gagaatttag ttgaacgact ccatttgctc aatggtaaga
      361 ttaccaagtg ggaacggatt gaaaacggcg aagtcgtaga agaatccgat acgtatacag
      421 ggggtgatga ataatgccac agacagacgc gggtagaaac cttatggtgc aggcaaccat
      481 cggtgcttcc gtaacattct tcaataacgc taatgcgttt attggtgtcg gtgactctac
      541 cacagccttt agtgcagcgc acacagactt gcaggccgca acgaacaagt tgcgtaaggc
      601 tatggacgcc accttcccta gcggtggttc taacgttatt actttccgct caacgtttgc
      661 aacaacagat gcaaactttg cctggcagga gtggggagtc tttaatgctt cctcagcagg
      721 tacgatgttg aaccgtaagg ttgagtcgct cggtacaaag acaagcgcac aaacttggca
      781 gttcactgta acgctgacat ggaccactgc ataagatttg acaagtaaac atatcggcat
      841 tataatttga ctatctcaag ttgaggtagg aggacttcta accgccacac ggaggctatt
      901 tcagtctacc gtgtggcggt tttatttata aatggctgac aacttatcag taccggtggc
      961 atccggtaac gcaacgctcg caacagaaga ccgagcggct ggtggcgtac actggcaaaa
     1021 ggtcgaggta tctggtgaat ctcttgctgt caccaatggc tcgcttacta cgtctacctc
     1081 tacgtctgct gcatccgttg ccaatatggg taatgttacc tttgcactgt tcggtaccca
     1141 cgccggtttc acggtagtct ttgaggcatc ccctgacggc ggtaccactt a
//
LOCUS       DATCGC010002287         1022 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_164700, whole genome shotgun sequence.
ACCESSION   DATCGC010002287 DATCGC010000000
VERSION     DATCGC010002287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1022)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1022)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1022
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164700"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..934)
                     /locus_tag="VIJ87_21730"
     rRNA            complement(<1..934)
                     /locus_tag="VIJ87_21730"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          194 a          311 c          241 g          276 t
ORIGIN      
        1 gagatagtct gatgggtatt cggagtttga taggagcgtg taggcgggta gccccacgtc
       61 tcctttcagt agctctaccc cccatgagta gttgctcgag gctgccccta aaggcatttc
      121 gaagagaacc agatatctcc cagtttgatt agactttcac tcctccccgc aggtcatgcc
      181 agaacttttc aacgttcacg gcttcgagcc tcccgttcct tttacggaac gttcactctg
      241 cccacgggta gatcacgggg tttcgggcct attgccaacg acttgacgcg catttcgcac
      301 tcgctttcgc tacggctgca tgaatttcct catttagcct tgccgctgac aataactcgc
      361 cggcccatta tgcaaaaggt acgccgtcat ccattcccct ttcggggcat aggactccga
      421 ccgcttgtaa gtgtatggtt tcaggtactt ttaactcagc taatagctgt gcttttcacc
      481 attcaatcgc cctactagtt cactatcggt catcgaggag tatttagcat tgcccggtgg
      541 gccgggcggc ttcacacgga gttccacgag ctccgtgcta ctctggagag cacatgttaa
      601 cggggcccta cgcctgtcgc ctacgggact atcaccctct gtggtgcgac tttccagacg
      661 ctttagctag gcgtgggttt gtaacccctc agtgcttccg caaccccggt ccgaagaccg
      721 gtttgggcta tcgtccgcgt tcgctcgccg ctactgacgg aatcgatgtc tctttctgtt
      781 cctccaggta atgagatgtt tcagttccct gggttagctc gggtattccg ggatcaaagc
      841 tcgtttgaca actcccccgg acttatcgca gtcttccacg ccctttcgcc ttctggtgcc
      901 aagacatccc ccacacgccc ttactagctt ggccgcattg ttcgctccct cgcactcgtg
      961 ttaccacaag attgagaagg cgaaccatct tccagctaga aagttacttc aactgcccca
     1021 tt
//
LOCUS       DATCGC010002288         1612 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_431054, whole genome shotgun sequence.
ACCESSION   DATCGC010002288 DATCGC010000000
VERSION     DATCGC010002288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1612)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1612)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1612
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_431054"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            237..554
                     /locus_tag="VIJ87_21735"
     CDS             237..554
                     /locus_tag="VIJ87_21735"
                     /inference="COORDINATES: protein motif:HMM:NF015925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase family
                     protein"
                     /protein_id="HEY5447035.1"
                     /translation="MFGGIVVILNTTRITVKPENGNELGQTIGRLVEPARDIKGCRSF
                     RFYLDAADENSLLLFSEWETEADLNNYLQSNTFAILNGAIKVLSLRSIEAKAFVTAVR
                     NEA"
     gene            579..>1612
                     /locus_tag="VIJ87_21740"
     CDS             579..>1612
                     /locus_tag="VIJ87_21740"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEY5447036.1"
                     /translation="MLKNTQAKISYKPQLKAQSERHWSPSLISVLTNTEKTPKWGGPR
                     KPDELDEFLEAIVDACVSNVAVLDESGTILYASKAWRLLQQPTAMGAESLEIAPYYFE
                     SCIRLHQSEADGAAEISLKDDLQAILFSEEKEFHQQYYCRSFKEQRPFTMHAARLNLP
                     GSIFRVLITHEDMPVAREEVEKSEKRLTQLLETTRILAWEGEVEGLRFTHVGEQAFKM
                     FGYPASVWCEPNFLASHIHPADQERVITAHLTEIEVKEHFDLTFRMLGADGQVVWVQN
                     LVSVTKENGKPTRMHGFLIDISERKKSEEALKYLSGRLIAAQEEERKRVARELHDDLN
                     QRMAVISIEL"
BASE COUNT          444 a          378 c          420 g          370 t
ORIGIN      
        1 ggtcagatcc ggcccacaca tcaccgctcg acactataaa tatctctaac ctgctcataa
       61 caaaggaacc acacctatcc gcggcttctt cgtacgtttg tgcacgccga ttgcactgga
      121 gaacggagca aggtcagagt caatcagttc agttcagttc tcatttcacc taacgaagtt
      181 ttcgccagat gcgatagctg acgtcggaaa gtgcgggccg attcaaaggg gatcgtgtgt
      241 ttgggggtat cgtcgtgatc ttgaacacaa caaggattac cgtgaagcca gagaatggaa
      301 acgaactcgg acaaacgatt ggccgcctgg ttgaacctgc acgggatatc aagggctgcc
      361 gatcatttcg tttctatctc gatgctgccg atgaaaattc gttgctactt ttcagcgaat
      421 gggaaaccga agccgacctc aataattatc ttcagtcaaa cacgttcgcg attctaaatg
      481 gtgcgatcaa ggtcttgagc cttcgtagta ttgaagcgaa ggccttcgta actgcggtac
      541 ggaacgaggc ttaaacgaac gaaccaatgg atggacttat gttaaagaac acccaggcaa
      601 agatttcata taagccgcaa ttgaaggcgc agtcggagcg acactggtca ccttcgctaa
      661 tttcagtcct aactaatact gagaagacac cgaagtgggg cggacccagg aaacccgacg
      721 aattagatga gttcctggaa gcgatcgttg atgcttgtgt gtcgaacgtc gcggtactcg
      781 acgaatctgg aaccattctc tatgccagca aagcatggcg tctgcttcaa cagcccaccg
      841 ccatgggggc ggaatccctc gagattgctc cttactattt tgaaagttgc ataagactgc
      901 accaatcgga agccgatggc gctgcggaga ttagtctgaa ggacgatttg caagcaattc
      961 tatttagcga ggaaaaggaa tttcatcaac agtattactg ccgttctttt aaggagcagc
     1021 ggcctttcac aatgcatgcg gcaagactaa atctgcccgg atcgattttt agagtgctta
     1081 tcactcatga ggatatgccg gtcgctcgag aagaggttga gaagagtgaa aaacgactaa
     1141 cccagttgct ggagaccacc agaattctgg catgggaagg tgaagttgag ggtttgcgtt
     1201 tcactcacgt cggcgaacaa gctttcaaaa tgtttggcta tccggcaagc gtttggtgcg
     1261 aaccgaattt ccttgcgtcg catatccacc ccgctgatca ggagcgagtg ataaccgctc
     1321 atctaactga aatagaggtt aaggaacact tcgatctaac tttcaggatg ctgggtgcag
     1381 atggacaagt cgtgtgggta caaaacctgg tcagtgtcac aaaagaaaat ggcaaaccga
     1441 ctcgaatgca cggttttctg atcgatattt ccgagcggaa aaagagcgaa gaggcgttga
     1501 agtatctcag cggtcgcctg atcgctgcgc aggaagagga gcgcaagcga gtcgcgcgcg
     1561 aactacacga cgatttgaac cagcgcatgg ccgtcatatc aatcgaactc ga
//
LOCUS       DATCGC010002289         1297 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_498785, whole genome shotgun sequence.
ACCESSION   DATCGC010002289 DATCGC010000000
VERSION     DATCGC010002289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1297)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1297)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1297
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_498785"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1097)
                     /locus_tag="VIJ87_21745"
     CDS             complement(<1..1097)
                     /locus_tag="VIJ87_21745"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEY5447037.1"
                     /translation="MSTLTSCGTKVVSETRATPADPPKPPPSVQMWLGSPSRSFYGTG
                     PWTDEPLQVFWEFKTSSISGRLHKDPWGGTSWPGQPSVDEHNVFYPSADGNVYCLNVR
                     DGSLVWKFKAEDSFKATPVIAGNRIIASGLDHYIYCINRNDGTLLWKYKTGFEVDCGS
                     AVIDGKVYFGGEDGFFYCLNLEDGSVVYKTERLGSMEGSFSAVDGRIYIGTEQGDLFC
                     LNMADGATIWKARIGADSDSTPAVADGLVYTAAENGFVYCFRQSNGELVWKFRTEGPS
                     NGIWASPIVANGRVHIGSSDHFLYCLTADKGEVVWKYRARGPIWGTAPLVDGRLVFGD
                     KAGWIHTVSADDGRSISELKIGDNINATPAV"
BASE COUNT          311 a          363 c          307 g          316 t
ORIGIN      
        1 aaaacagccg gggtggcgtt gatattatca cctatcttta actcgctgat cgaccgtccg
       61 tcatccgccg acacggtgtg tatccaacca gctttgtcgc caaagacgag tcgaccatca
      121 accaaaggtg cagttcccca aatcgggcca cgagctctgt acttccaaac tacttcgcct
      181 ttgtccgcgg tcaagcaata caaaaagtga tcgcttgatc cgatgtgcac tcttccgttc
      241 gcgacaattg gactcgccca gatgccattg ctcgggcctt cagttcggaa cttccaaacg
      301 agttcgccgt tggattgacg aaagcagtag acaaatccat tctcggcggc tgtgtaaacc
      361 aaaccatcgg cgacagcggg agttgaatct gagtcggctc cgatccgagc tttccaaatc
      421 gtcgcaccgt ctgccatgtt caaacaaaag agatcgcctt gttcggttcc aatatagatt
      481 cgtccatcaa ctgcggagaa gcttccttcc atcgaaccca atcgctcggt cttgtagacc
      541 actgagccgt cttcaagatt cagacagtag aaaaacccgt cttctccgcc gaagtaaact
      601 ttaccgtcaa tcacggccga accgcagtcg acctcgaaac cagttttgta tttccaaagg
      661 agcgttccgt cattgcgatt gatgcagtag atgtagtgat cgagtccgct ggcgataatg
      721 cggttcccgg caattacagg cgtggctttg aaactatctt cggccttgaa tttccacacc
      781 aggctgccgt cgcgaacgtt aagacagtaa acgtttccat cggctgaagg ataaaagacg
      841 ttgtgctcgt cgacagatgg ttgacctggc cagctcgtgc caccccaagg atctttgtgc
      901 agacgtcctg agatcgaact ggtcttgaat tcccagaata cctgaagggg ttcatccgtc
      961 cagggaccgg ttccatagaa gcttcgcgaa gggctaccca gccacatttg aactgatggt
     1021 ggaggttttg gcggatctgc cggtgttgct ctcgtttcgc ttactacctt tgtgccacag
     1081 gatgtcaatg tggacacaga gacaatgata aggattagac aaagtcggga agagttcatc
     1141 gggggacgaa acctttatgt catatgtacc ttactcgggc cactggcccg catagactag
     1201 ctcagccgtc ccagtgatca caacctcatt accggcttcc cacttaacct tgacctcgcc
     1261 gccttccgtt accacgcgta cctcatgatc aattttc
//
LOCUS       DATCGC010002290         1416 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_397849, whole genome shotgun sequence.
ACCESSION   DATCGC010002290 DATCGC010000000
VERSION     DATCGC010002290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1416)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1416)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1416
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_397849"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..627
                     /locus_tag="VIJ87_21750"
     CDS             <1..627
                     /locus_tag="VIJ87_21750"
                     /inference="COORDINATES: protein motif:HMM:NF015739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0043093 - FtsZ-dependent cytokinesis
                     [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ/DivIB"
                     /protein_id="HEY5447038.1"
                     /translation="IRVRITERQPRLVVRTSAGRFVWVDDDAVVLSEMLPSDQTPNFF
                     LRGWNEDPAETVRTENVERVKKFIELQSDWDSLGLSERVSEVNLLDTHDVRAQLAGDD
                     SQIEVRLGAQDLGQRLKKALSVLDSQRQTSRGPLISYIDLTQGKRAIVGLVSGTHVTE
                     SAEQNGEASTEAKAVSPDESIRTNKPTDKSAKDSKTRNRIKKPDQKRT"
     gene            676..>1416
                     /gene="ftsA"
                     /locus_tag="VIJ87_21755"
     CDS             676..>1416
                     /gene="ftsA"
                     /locus_tag="VIJ87_21755"
                     /inference="COORDINATES: protein motif:HMM:TIGR01174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043093 - FtsZ-dependent cytokinesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HEY5447039.1"
                     /translation="MAKRTQHTIGLDIGTSRVTCIAGEPGEGGLLEVVGIGEAEARGL
                     RKGVIVNPDAAVDAIKKAVEEAERMSGLEAEEVTINLAGSHILGFNGQAIVAVSGRDR
                     EIVPEDVRRAIDSACAIQLPAGREIVDRLPQEFIVDDQDGINDPVGMIGARLAVKVHI
                     VTSPVTARQNAINAVNRAGLVVADMVLEQLAAAEASLTEDDKEFGAALVDVGAETTGL
                     IIYQRGAVQHTAVFPLGGSHFTNDIAFGL"
BASE COUNT          344 a          332 c          426 g          314 t
ORIGIN      
        1 attcgagttc gcataacgga gcgacagccg cgattagtag ttcgcacgtc ggcggggcgc
       61 tttgtttggg tggatgacga cgctgttgtg ttgagtgaga tgttgccatc tgaccaaaca
      121 ccaaactttt ttctgcgagg ctggaatgaa gatccggctg aaacggttcg tactgaaaac
      181 gttgaacgag tgaagaagtt tattgaactt cagtcggatt gggattcact cggtctgtct
      241 gagcgtgtga gcgaagtgaa tcttctcgac actcacgacg ttcgcgcgca actagctggc
      301 gatgattcac agatcgaggt tcgcctaggc gcgcaagatc tcgggcagcg attaaagaaa
      361 gcactgagtg ttttggactc gcagcgacag acttcacgtg gtccgttgat cagctatatc
      421 gatctaacgc aaggaaagcg agcaattgtt ggtctcgtgt caggcactca cgtgactgag
      481 agcgctgagc aaaacggtga agcatcaacc gaggcgaaag cagtttctcc cgacgaatcc
      541 attcgaacaa acaagccgac tgacaagagt gcaaaggatt cgaagacccg gaaccgaata
      601 aagaagcctg atcaaaagcg aacctgacga aggcggagtt tgtccgcgtc gtttcagcga
      661 aggagcacag tttagatggc caagcgcacc caacacacaa ttggtctcga catcgggacg
      721 agcagggtga cgtgtattgc tggcgagcct ggtgagggtg gtttgctcga agtcgttgga
      781 attggtgagg cggaagctcg tggtctccgc aaaggagtaa tcgttaatcc cgacgctgca
      841 gtcgatgcga tcaagaaggc ggttgaagag gcggagcgca tgagtggtct cgaagccgaa
      901 gaagtgacga tcaatttggc gggatcgcac attcttgggt ttaacggaca ggcaattgtt
      961 gctgtttccg gacgcgatag agagatcgtt ccggaggacg tacgacgggc cattgattcg
     1021 gcctgtgcca ttcaacttcc cgccggcaga gagatcgtcg atcgcttgcc acaggagttc
     1081 atagtcgatg atcaggacgg cattaacgat cccgtcggga tgattggcgc gcgcctcgcg
     1141 gtgaaagtgc acatcgttac aagtccggtc accgctcgtc agaatgcaat taacgcagtg
     1201 aaccgagctg gtcttgttgt ggctgacatg gttctggagc aattggccgc tgccgaagct
     1261 tcactaactg aggacgataa agaatttggc gcggcgctgg ttgatgtggg cgccgaaacc
     1321 actggcctaa ttatttacca gcgaggagca gttcagcaca ccgcagtctt tccccttggt
     1381 ggttcgcatt tcacaaacga catcgccttc ggcttg
//
LOCUS       DATCGC010002291         1266 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_498831, whole genome shotgun sequence.
ACCESSION   DATCGC010002291 DATCGC010000000
VERSION     DATCGC010002291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1266)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1266)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1266
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_498831"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1266
                     /gene="priA"
                     /locus_tag="VIJ87_21760"
     CDS             <1..>1266
                     /gene="priA"
                     /locus_tag="VIJ87_21760"
                     /inference="COORDINATES: protein motif:HMM:TIGR00595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005658 - alpha DNA polymerase:primase
                     complex [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0016818 - hydrolase activity, acting on
                     acid anhydrides, in phosphorus-containing anhydrides
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HEY5447040.1"
                     /translation="PRETYTLTSSQQLVLDEIELGITKGSYAAYLLHGVTGSGKTEVY
                     IRAMRSALDRNKSSLMLVPEIALTPVFSRRLREHFGDEVAIFHSSLKRGERFDEWTRV
                     RDGKARIVIGTRSAVFAPIQNLGLIVIDEEHESSYRQQDSPYYSGRDTAIVRAQKESA
                     VVVLGSATPSLESFQNAQNGKYTYLSLPERIGGRPMASASIIDMRDVFARHGKPSVFA
                     DELLEAIQETHDRGEQSIILLNRRGYSSFVLCRSCGESVQCPNCDVTLTYHRSERVVI
                     CHYCNHRQGVPKVCPQCGKDYIHFVGEGTEQLEEMLKTGFPTLRIARIDRDTTTNRRR
                     FEQSLRDFSDGHIDTLVGTQMLAKGHDFPNVTLVGVVSVDAGLALPDFRAAERTFQLI
                     TQVAGRAGRGDRPGRVLIQTYHPTHYALRH"
BASE COUNT          308 a          337 c          323 g          298 t
ORIGIN      
        1 cctcgtgaaa catacacgct caccagctca caacaattgg tcctggatga aatcgaactt
       61 ggtattacaa agggatcgta tgctgcctat ttgcttcatg gtgtaactgg cagcggcaaa
      121 acagaggttt atattcgagc aatgcgttcg gcgcttgatc gcaacaaatc gtcgctgatg
      181 ctggtcccag aaatagcgct gactccagtg ttctcccgtc gtttgcgcga acacttcggt
      241 gatgaggtgg caatctttca ctcttcattg aagcgcggcg aacgttttga cgaatggact
      301 cgagttagag acggcaaggc tcggatagta attggcactc gctcggcagt ctttgcgcca
      361 atccagaacc tcggtcttat cgtcatcgat gaagagcacg agtcgagtta tcgtcaacaa
      421 gactcccctt actacagtgg ccgcgacacc gcgattgtac gcgcacaaaa agagtcagct
      481 gttgtcgtgc tcggatcagc gaccccgtct ttggagtcat ttcaaaatgc tcaaaatgga
      541 aagtacacct atctcagttt gcccgagcga atcggcggca gaccgatggc gagcgcttcg
      601 atcatagaca tgagggatgt ctttgcccgg cacggcaagc caagcgtttt cgcggacgaa
      661 ctcctcgaag ccattcaaga gactcatgac cgtggcgaac aatcaatcat cctacttaac
      721 agacgcggtt attcgagctt tgttctttgc cgatcctgcg gtgagtcagt tcagtgcccg
      781 aattgcgacg taacactcac ctaccaccga agcgaacgag ttgtcatttg ccattactgc
      841 aatcatcgtc aaggcgttcc aaaggtgtgc ccgcaatgtg gaaaggacta catccacttt
      901 gttggcgaag gcactgaaca actcgaggag atgttgaaga ctggattccc aactctccgc
      961 attgcgcgca tagatcgcga cacaactacc aaccgccgcc gctttgaaca gtcgttgcga
     1021 gattttagtg atgggcacat cgataccctg gtcggcactc agatgctggc taagggtcac
     1081 gactttccga atgtaactct ggttggtgtc gtcagcgttg atgcaggcct ggcactacca
     1141 gatttccgtg ccgccgaacg aactttccag ttgataacgc aagttgccgg tcgagcggga
     1201 agaggcgatc gaccgggtcg agtgttgatt caaacttatc atccaacgca ctacgcactt
     1261 cgccac
//
LOCUS       DATCGC010002292         1000 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_397898, whole genome shotgun sequence.
ACCESSION   DATCGC010002292 DATCGC010000000
VERSION     DATCGC010002292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1000
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_397898"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..438
                     /locus_tag="VIJ87_21765"
     CDS             <1..438
                     /locus_tag="VIJ87_21765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447041.1"
                     /translation="NIIERFQAKHALQEERERKNLPGSSNGEFSSGVPDKNGTREKGI
                     FENEQVRVSTTSVPKGTNWSAPHDGRDRVVVLLDKVNQIAETNEKDSSSSAWKVTWIP
                     ANSDVNVRNKSDQTKNLMILEFKERGAEQAVVRTEAPTSKASR"
     gene            complement(618..>1000)
                     /locus_tag="VIJ87_21770"
     CDS             complement(618..>1000)
                     /locus_tag="VIJ87_21770"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEY5447042.1"
                     /translation="SVAVNAPVAAVYKRWLAFEDFPKFIPVIKRVRKLDANHFVALFA
                     FNGKQYEATLEITLRVPERRLAWRTISNGHAHDHLAAGVVSFASLSDHGTRVTLKLTS
                     NFGGAISNRVDRYLQNFKRLIEEQ"
BASE COUNT          258 a          240 c          279 g          223 t
ORIGIN      
        1 aatatcatcg agcgtttcca ggcgaaacac gcattgcagg aggagcgcga acggaagaat
       61 ttgcctggtt cgtccaacgg cgagttcagt tcaggtgtcc ccgacaaaaa cggcaccaga
      121 gagaagggga tctttgagaa cgaacaggtt cgagtatcaa caacgtccgt gccgaaaggg
      181 actaactggt cggcgccgca cgacgggcga gatcgggttg tcgtcttgct ggacaaagta
      241 aatcagatcg cggaaacaaa cgaaaaagat tcgtcctctt ctgcttggaa agtgacttgg
      301 attccggcaa acagcgacgt caatgtgcgt aacaagtcag atcagacaaa gaacctgatg
      361 attctggaat tcaaagagag gggtgctgag caggcggtag tccgcaccga ggctccgacc
      421 tcgaaggcca gccgatgatt acgatcgtga tcatgttcag cttggtcgtc ttgctgttcg
      481 gtttcgattc taactaacga gactccaagg gatcattccg gggaggggaa gcacccttct
      541 attgaaaaga agcaatgtcg tcttcacctc gagagcttgg ctccgttagg tcgaacaaat
      601 gttttgcgtt ttcgatctca ctgctcctca attagccgtt tgaaattttg cagataccta
      661 tcgacccggt ttgagatggc accgccgaag ttcgaggtta gcttcagagt cactcgtgtg
      721 ccgtgatcag aaagcgaggc gaaagaaacg actccagcgg caagatgatc gtgcgcgtga
      781 ccgttggaaa tagttcgcca ggccagcctt cgttcaggga cgcgcagtgt gatctcaagc
      841 gtcgcctcat attgctttcc gttgaaggcg aacaatgcga caaaatggtt cgcgtccaat
      901 tttcgcacac gtttgatcac ggggatgaat tttggaaaat cttcaaacgc gagccagcgc
      961 ttatagacag cggcaactgg cgcgttgacc gcgactgatc
//
LOCUS       DATCGC010002293         1626 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_164781, whole genome shotgun sequence.
ACCESSION   DATCGC010002293 DATCGC010000000
VERSION     DATCGC010002293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1626
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164781"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1097
                     /locus_tag="VIJ87_21775"
     CDS             <1..1097
                     /locus_tag="VIJ87_21775"
                     /inference="COORDINATES: protein motif:HMM:NF019552.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="heparinase II/III-family protein"
                     /protein_id="HEY5447043.1"
                     /translation="IETLWLLGPSGLADYDSLATHEPEKLSQSFEAGGYYVMRDSWDE
                     TANYLVVDCGPHGTLNCGHAHADALSIDVAVSGKTSVVDPGTYTYTGDSGLRDWFRGT
                     SAHNTLTLRQLSSSEPDGPFAWKHIARSTRRTWLSHESFDFFKGDHDGYLRLSNPAVH
                     QRAIFFLKKNYWIIQDQLTAPLAEPADIWFHFAPFIEPRLSKSPAGDDVFVDSTVELH
                     CFAENGSWRQEDGWVSNCYLKKEPAKVCVFSPLLGESRSAVTFMLPVSGSWKVQQLPA
                     IGGKAFAIVNDSWRDLVMIRTGERVEGEGFSTDFQWSWVRSAVGRDDLEKLVLVGGHS
                     LQMGDRVVVKRTDQEEYVVADRSEIAKLVV"
     gene            1121..>1626
                     /locus_tag="VIJ87_21780"
     CDS             1121..>1626
                     /locus_tag="VIJ87_21780"
                     /inference="COORDINATES: protein motif:HMM:NF024912.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447044.1"
                     /translation="MCGIAGIAFSSKSRRSANENVLRRMCDVISHRGPDDEGFFIDGS
                     VGLGHRRLSIVDVAAGHQPMTNEDGSLRITYNGEIYNHVDFRAELEARGHVYQTHCDT
                     ETILHLYEEHGEGCVEYLRGMFSFAIWDSNKRKLFIARDRLGVKPLYYAQTQDGSLYF
                     ASEIKSLLA"
BASE COUNT          376 a          369 c          438 g          443 t
ORIGIN      
        1 acattgagac tctctggtta cttggtccat ctggtttggc agattacgac tctcttgcga
       61 ctcatgagcc tgagaagtta tcccaatcat ttgaagctgg tggctattat gtgatgcgtg
      121 attcgtggga cgaaacggcc aactacctcg tcgtcgattg tggccctcat gggactctta
      181 actgtggaca tgcccacgcg gatgcgctct cgatcgatgt cgctgtcagt ggaaaaactt
      241 cagtggttga tccgggaacc tacacctaca ctggcgactc aggtttgcga gattggtttc
      301 gagggacgtc tgcgcacaac acactgacgc ttcgtcaact ttcgtcgtct gagcctgacg
      361 gtcctttcgc ctggaagcat attgccagaa gtacgcgacg aacctggctt agtcatgagt
      421 cattcgactt tttcaagggt gaccacgatg ggtatcttcg gctttcaaac cctgccgtcc
      481 accagcgtgc cattttcttc ctcaaaaaga actattggat cattcaggat caattaacgg
      541 cccccctggc cgaacccgct gatatttggt ttcactttgc gcctttcatc gagcctcgat
      601 tgtcgaaaag tccggcgggt gacgacgttt ttgttgattc taccgttgaa cttcactgct
      661 ttgccgaaaa tggtagttgg aggcaggaag atgggtgggt ttcgaactgt tatttgaaga
      721 aggaaccggc aaaagtatgt gttttttcac cgcttttggg cgaatctcga agtgcagtga
      781 cctttatgtt gccggtctcg ggcagttgga aagttcagca gttaccggca atcggtggaa
      841 aagctttcgc tatagtgaat gacagttggc gcgaccttgt tatgattcgt accggagaac
      901 gcgttgaagg tgagggcttt tcaacagact ttcaatggtc atgggtccgg tccgcggtgg
      961 gacgagatga ccttgaaaag ctcgttcttg tcggaggtca ttcacttcag atgggcgatc
     1021 gggttgttgt gaaacgaacc gatcaagagg agtatgtcgt tgcggatcgt tctgagattg
     1081 caaagttagt tgtctaagga aatagaagtt cggaagactt atgtgtggaa ttgccggaat
     1141 agctttttca agtaaatcgc gtcgctcagc aaatgagaat gtgttgaggc gaatgtgcga
     1201 tgtaatcagt catcgtggtc ctgacgacga aggattcttc atcgatggaa gcgttggtct
     1261 tggccatcgt cgattaagca tcgtagacgt tgcggctggt catcagccga tgaccaacga
     1321 agacggctct ttgagaatta cctataacgg cgaaatctat aaccacgtag attttcgcgc
     1381 ggaattggaa gcgcgcggac acgtctacca aactcattgt gatacggaaa ccatccttca
     1441 tctttacgag gagcacgggg aaggctgcgt cgagtatttg agaggaatgt tttcgtttgc
     1501 tatctgggat agcaacaaac gaaagctgtt cattgctcgc gaccgccttg gcgtcaaacc
     1561 actctactac gcccaaactc aggatgggtc gctctatttc gcttcagaga tcaagtcctt
     1621 actcgc
//
LOCUS       DATCGC010002294         1106 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_431263, whole genome shotgun sequence.
ACCESSION   DATCGC010002294 DATCGC010000000
VERSION     DATCGC010002294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1106)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1106)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1106
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_431263"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..439
                     /locus_tag="VIJ87_21785"
     CDS             <1..439
                     /locus_tag="VIJ87_21785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447045.1"
                     /translation="REWYDPGWVAHGFLASPAADVSRFLHSLFAGELLDANNLTEMVQ
                     LIPVPGQSSANKIGYGLGIAGETDPTFGPHFGHEGGGPGYAVVVTHVPVLCDRKTTIS
                     VFCNSDECHPREISQALLHVMFRYFNEQPTVRTSQQGRLSAAQ"
     gene            461..1057
                     /locus_tag="VIJ87_21790"
     CDS             461..1057
                     /locus_tag="VIJ87_21790"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: protein motif:HMM:TIGR00636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008817 - corrinoid adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HEY5447046.1"
                     /translation="MRITKVYTKTGDAGKTRLAGGQQVWKDSLRVEAYGTLDELNAVV
                     GVVRVMNAEMAGRHAQADQLEDDLQWIQNKLFDLGGILATAPGQEFKNMPQVTEKDVT
                     KLEKIIDRCQKDLAPLKEFILPGGGKVSGFLHQARTVCRRVERVCVHLSREEPVDGMN
                     IKFVNRLSDALFVLARWAAKTQGEPEFLWERDVKKAMG"
BASE COUNT          267 a          236 c          354 g          249 t
ORIGIN      
        1 tcgggagtgg tatgaccctg ggtgggttgc gcatgggttt ctggcttcac cagcggcaga
       61 cgtgagccga tttcttcaca gtctgtttgc tggtgaattg ctcgatgcca ataatctcac
      121 cgaaatggtg caattgattc cggtgccggg ccaatcctca gctaacaaga ttggttatgg
      181 gctagggatc gccggagaaa cggatccaac gtttggtccg cattttggtc atgaaggggg
      241 tggacccgga tatgcggtcg tcgtcactca tgtgccggta ctctgcgata gaaagacgac
      301 gatctcggta ttctgcaata gtgatgagtg ccatcccaga gagatttctc aggcgttgct
      361 gcatgtgatg tttcggtact tcaatgaaca gccgaccgta aggacctcgc agcagggtcg
      421 actaagcgct gctcagtaag ggaacagcag gggaggcagg atgcgtatca cgaaagtcta
      481 cacgaaaacc ggggacgcgg gaaaaacaag gctggccggg ggacagcagg tgtggaagga
      541 cagtctgcga gtcgaggcct acggcaccct cgatgaatta aatgcggtgg tcggggtcgt
      601 gcgggtgatg aatgctgaga tggcagggcg ccacgcacag gcagatcaac tcgaagatga
      661 tcttcaatgg atacaaaata agctcttcga tcttggagga attcttgcga cagcccctgg
      721 ccaggaattc aagaacatgc ctcaggtgac agagaaagat gtcaccaaac tggaaaagat
      781 cattgaccgt tgtcaaaaag acctggctcc gctcaaagag tttattctgc ctggaggggg
      841 aaaggtatcg ggttttttgc atcaggcgag gacggtgtgc cgtcgggtgg agcgggtatg
      901 tgtgcatctt tcgcgtgagg agccagtcga tgggatgaat attaagtttg tgaatcgtct
      961 gagtgatgcg ttgtttgttc tggcccgttg ggctgccaag actcaggggg aaccggaatt
     1021 tctatgggaa cgtgatgtga agaaggccat gggctgatcg aatgaagaag acgcacaggc
     1081 agcgatcgaa gctgattctc gtactc
//
LOCUS       DATCGC010002295         1516 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_398015, whole genome shotgun sequence.
ACCESSION   DATCGC010002295 DATCGC010000000
VERSION     DATCGC010002295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1516
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_398015"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1516
                     /locus_tag="VIJ87_21795"
     CDS             <1..>1516
                     /locus_tag="VIJ87_21795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447047.1"
                     /translation="SSDRNGNLDVFLMPAGGGTAKQLTTHSADDTVLGWSADSKSVMF
                     SSNRGEDFMPQLYLVSVDGGMPWKAGADMGIQASYSPDGKRLAYNQKGQVYWRKYYRG
                     AYQTDIMVMDVAAKKFTQVTDFDGLDSWPMWGRDGFIYFVSDRDGSGLTNIWRVSDGG
                     GKADKVTTFKAGDVRWPAISADGRVIVFEHDFGIWKLDVNTKKATPITLNIDAETQDN
                     MSDVQSFSSQADDYDLAPNSRRIAVSVHGEIFTAPVEEGDLKQLTDSAARERSVSYSP
                     DGKWISYVSDQSGREEIFVVPVDGSGPAQQITDIDALKLSYNWSPDSKDMIFTASDDK
                     LRKLTVASKQTTVLDSSRYGGFGAPVWSPDGKWIAYSKADASRTSDVFVIASSGEEKE
                     PHKITFDSNNDINPQFGPDGRKLFFERIASTGGTNSVQIYSVWLEHLDRDPDDAEERE
                     VEAAANAPGGEGAEGTPARRPPANRPPHETKMDWAGMRHRTRQITRMPFPVSNYT"
BASE COUNT          386 a          394 c          407 g          329 t
ORIGIN      
        1 tttcgagtga tcgaaatgga aacctcgacg tcttcctgat gcccgctgga ggtggtactg
       61 caaaacagtt aactacccac tccgctgacg ataccgtact cggttggtca gctgactcga
      121 agtcagtgat gtttagcagc aaccgtggcg aagatttcat gcctcagctt taccttgtca
      181 gcgtcgatgg tggtatgccc tggaaggccg gcgcagacat gggaattcaa gcttcctatt
      241 cgcccgacgg caagcgcctg gcatacaacc aaaaaggcca ggtctactgg cgcaagtatt
      301 atcgaggcgc ctatcagacc gacatcatgg tgatggacgt tgccgcgaag aagttcacgc
      361 aagtaactga cttcgatggt ctcgattcgt ggcccatgtg gggacgcgac ggtttcatct
      421 actttgtcag cgatcgcgat ggaagcggat taactaacat ttggcgcgtt tccgatggag
      481 gaggaaaggc cgacaaagtc accacgttca aagcaggtga cgtgcgttgg ccggcaatta
      541 gtgccgacgg ccgtgtaata gtttttgagc acgacttcgg catctggaaa ctcgacgtca
      601 acacgaaaaa agcaacgccc ataacgctga atatcgatgc agagacccag gacaacatgt
      661 cagacgtaca gtcgtttagc tcacaggctg acgactatga cctggcaccc aattcgcgaa
      721 gaattgccgt ttcggttcac ggtgagattt ttacggcccc tgttgaagaa ggcgacctca
      781 agcaactgac tgatagcgcc gcacgtgagc gttcggttag ttactcgccg gacggcaaat
      841 ggatctccta cgtctccgat cagagtggcc gtgaagaaat atttgtagtg cccgtcgacg
      901 gttcgggtcc agctcaacaa attaccgaca ttgatgcgct gaaactttct tacaactggt
      961 cgcctgattc gaaagacatg atctttacag cttccgacga caaactgcga aaactaaccg
     1021 ttgcgtcaaa gcaaactacc gtgctggact cgtcgcgcta cggtggtttt ggagcgccag
     1081 tgtggtcgcc tgatggaaag tggatcgcgt attcgaaagc ggacgcgtcg cgcacttccg
     1141 atgtttttgt aattgcgtcg tcgggtgaag aaaaagaacc acacaagatc acgttcgatt
     1201 ccaacaacga catcaatccg cagtttggtc cagatggccg caaattgttc ttcgaacgaa
     1261 tcgcgtcaac gggaggaaca aactcagtac agatctattc agtttggctc gaacatctcg
     1321 atcgcgatcc tgatgacgcg gaagaacgag aagtcgaagc cgctgcgaat gctccagggg
     1381 gagaaggcgc ggaaggaacc cccgctcgaa ggccgccggc caatcgtccg ccacatgaaa
     1441 ccaaaatgga ttgggctgga atgagacatc gcactcgtca aatcacgcgc atgcctttcc
     1501 cggtctccaa ttacac
//
LOCUS       DATCGC010002296         1038 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_431432, whole genome shotgun sequence.
ACCESSION   DATCGC010002296 DATCGC010000000
VERSION     DATCGC010002296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1038
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_431432"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            32..>1038
                     /locus_tag="VIJ87_21800"
     CDS             32..>1038
                     /locus_tag="VIJ87_21800"
                     /inference="COORDINATES: protein motif:HMM:NF025010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HEY5447048.1"
                     /translation="MRKFAKVTVFTTSLLLVAVILSGCGSGGPEASDSTVAATVNGRT
                     IMLKEVERGVTRQAGGKQAQLSQLELAQARLQILSNLIQREVMFQRAEREKLLPTEDQ
                     IDGAINTQKQQSGMTSEDFDKSLKEQNISMETLREEARKDLAIANLQDKYSGKISISD
                     KEVEDFYNGNKAQFVNARGVELAMIMVDPADNSAQGIANDAKNEADAKLKIDGIYQQL
                     QGKADFATVARAKSEDIQTLARGGDIGFMSEEDLKGNGFPAEIVGNFFGAMQVGDYTQ
                     PVRFSSGKWYIFKLAEKRLTNENLTLESPGVRQQITQGLTNQRKQILNAALMEVAINE
                     A"
BASE COUNT          309 a          233 c          282 g          214 t
ORIGIN      
        1 tatagcaatc aactaaagga gcagagttaa agtgcgcaaa ttcgcaaaag ttactgtttt
       61 tactacgagc ctattgttag tcgccgtcat tcttagcggg tgtggttccg gaggacccga
      121 ggcaagcgac agcactgtcg ctgcaaccgt taacggccgc accataatgc tcaaggaagt
      181 cgaaagaggt gtcacgcggc aggcaggagg taagcaggcg cagttgtcgc aattggaatt
      241 ggcacaagcg cgtttgcaaa tcctgagtaa tctgattcaa cgcgaggtca tgtttcagcg
      301 agccgagcgc gagaaactcc tgccgaccga ggatcagatt gatggcgcga tcaataccca
      361 gaagcaacag agtggtatga cctctgaaga ttttgataag agtctcaagg agcagaacat
      421 ctccatggag acactgcgcg aagaagcccg taaagatctg gcgatcgcaa accttcaaga
      481 taaatacagc ggaaagatca gcattagcga caaggaagtt gaagacttct ataacggcaa
      541 caaagcacag ttcgttaatg cccgcggtgt tgagctagcc atgatcatgg tcgatccggc
      601 agacaacagc gcgcagggta tcgccaacga tgccaagaat gaagccgatg ccaagttgaa
      661 aatcgacggc atctatcagc agctacaggg caaggctgac tttgcaaccg tcgcacgggc
      721 caagagtgaa gatattcaaa cgttggcgcg tggtggcgat atcggtttta tgagtgagga
      781 ggatctgaaa ggcaacggat tcccagctga aatcgttggc aacttctttg gtgcaatgca
      841 ggttggtgac tatacccaac cagttcgttt cagcagtgga aagtggtaca tctttaaact
      901 cgctgagaaa cgattaacga atgagaatct tacattggag agtccgggcg tacgtcagca
      961 aataacccag gggctcacaa accaacgtaa acagatcctc aatgctgcgt taatggaagt
     1021 ggctatcaat gaagccaa
//
LOCUS       DATCGC010002297         1006 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_431571, whole genome shotgun sequence.
ACCESSION   DATCGC010002297 DATCGC010000000
VERSION     DATCGC010002297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1006)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1006
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_431571"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1006)
                     /locus_tag="VIJ87_21805"
     CDS             complement(<1..>1006)
                     /locus_tag="VIJ87_21805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447049.1"
                     /translation="PFLILLAIVCFKRIEKYNLVAYLGTILGICAIQIGDFPHSVQMY
                     FYARGENLISVARRLPNGGYDFAFIAHKLNENFHVLWKLVMGLNDKAFWNVNVASAIT
                     PIAGVVLYPKFLVPLFILGVVYSLVHAYKQKRFILAMPVVLLFVGLVPNMMSGMGIPN
                     LTRSIMMLAPIYFLITYGAYSLACSIYTISSDRLRPAFSVLFAVFVGLVSVYQVNNYF
                     HYARDTIYGGKNNAPMVMYNEFLKSYIADHPNSRILYHEFGPFNEWSYVVVRWLGGKR
                     IQTMKDEGKLVFLTDDNRASMDNLLKQKYFDIVVSAYPDQLEHMLLDTKTMPAKVFPP
                     G"
BASE COUNT          288 a          233 c          234 g          251 t
ORIGIN      
        1 ccgggaggga ataccttggc tggcatagtc tttgtatcca ggagcatgtg ttctagctgg
       61 tcaggataag ccgatacaac gatgtcgaaa tatttttgct tcaacaggtt atccattgag
      121 gcacggttat catctgtcaa gaataccaac tttccctcgt ctttcattgt ctggatgcgc
      181 ttgccaccaa gccagcggac cacgacgtag ctccactcgt taaatggacc aaactcatga
      241 taaagtattc gactgtttgg atgatcggcg atgtaagact tcagaaactc attatacatc
      301 accatgggag cattgttctt cccgccatat attgtatccc gtgcgtaatg gaaatagtta
      361 ttgacctggt agacagatac aaggccaacg aacactgcaa acagtaccga gaaagcaggc
      421 ctaagcctgt cactgcttat ggtatagatt gagcaggcca gactgtaagc tccatacgtt
      481 atcaagaaat atatcggtgc gagcatcatg atgctcctcg ttaggttggg aatacccatt
      541 cccgacatca tattgggcac cagacctacg aagagcaaca ctactggcat cgcaagaatg
      601 aagcgcttct gcttataggc gtgtaccaga gaatatacca cgccgaggat aaacaagggt
      661 acaaggaact tgggatatag tactacgccg gcgataggcg tgatagcgct tgccacgttg
      721 acgttccaga aagctttgtc gtttagtccc attaccaact tccacagcac gtggaaattc
      781 tcattcagtt tgtgcgcgat gaaggcaaag tcatagccgc catttggaag tctcctggca
      841 accgaaatga ggttttctcc tctcgcataa aagtacattt ggacagagtg aggaaaatcg
      901 ccgatctgaa tcgcacagat gccgagaatc gtgcctagat aggcaacaag gttgtatttc
      961 tcaattcttt tgaaacagac gattgccaac agtatcaaaa agggca
//
LOCUS       DATCGC010002298         2274 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_398463, whole genome shotgun sequence.
ACCESSION   DATCGC010002298 DATCGC010000000
VERSION     DATCGC010002298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2274)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2274)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2274
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_398463"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            166..639
                     /locus_tag="VIJ87_21810"
     CDS             166..639
                     /locus_tag="VIJ87_21810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447050.1"
                     /translation="MRSCFAALLLMCLLPSLVPGALIVSAFGGGNTMSCCIGKAAGHC
                     HAALKVRKPKPEPMCGAKAASVDDGITVVADEADEPGSSTAVGRSIQNHCAGDCSSCA
                     VRSSKQLQRHKTPAVSLELPALAISLRPDESSEGFFNLHPEFDPFSPRGPPHSWT"
     gene            737..>2274
                     /locus_tag="VIJ87_21815"
     CDS             737..>2274
                     /locus_tag="VIJ87_21815"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEY5447051.1"
                     /translation="MKGLLYLFIAFVVSSPILHAQQTVTSATLSGRVEDRSGGTISGA
                     AVSATNFETNQRLTTTTDQQGRFRFPLLRVGDYSLEIQAQGFEESKKNLTLSVGQTID
                     VLTKLDIAGVSERVSVNIDVPLIETVRTQVAETIRPAEISDLPLNGRNYLDLALLVPG
                     VSPTNTASNQRFAETSAVPGQGISIAGQRNLYNSFVVDGMSANDDAADLTGTYYSEEV
                     IDQFQVVTSGGIAEFGRSSGGVVNILTKSGTNDWRGSFYGFGRNQRFDARNPVATSKD
                     LLTQAQYGATLGGPVHRDRTFLFTNFEQTRRNYSAVLTIAPSAVNSINQRLDAVNYHG
                     PRISTGVVPASFDTTNFLARIDHKPGERHQLSGRYSVYHIDAVNSRTVGGLNAVSRGS
                     GLDDTDQTGQFSLISTLTKHTLNEARLQVTRSRLSAPINDTTGPSVSISGVANFGTAT
                     SSPLARDIDLFEAVDNVSTQWANHSLKAGFDFLYNKVNIVFPGPIQGAYTFSSLNNFL
                     SGNYT"
BASE COUNT          572 a          615 c          545 g          542 t
ORIGIN      
        1 ccagacttta tgctcaagcc tccttcgcag gctaagaaag cctgataatt tgctgccaac
       61 gaatactggt aattccaacg cttctggcgt agcttgtaca gcgtcaccaa gactcatatt
      121 cctttggcga tgaagcgaag ctcaataaaa cttctcacag ttctaatgcg ttcctgtttt
      181 gcagcgcttc tcttgatgtg tctgctacct tcgctcgtgc cgggcgcact aatcgtaagc
      241 gcatttggcg gaggcaacac gatgtcgtgt tgcattggaa aagcagccgg ccattgccac
      301 gccgcactta aagttagaaa gcccaaaccg gaaccgatgt gcggagcgaa ggctgcgtcc
      361 gtcgatgacg ggattacggt ggttgcggac gaagctgatg agcccggttc ctccacggcc
      421 gttggcagat cgattcaaaa tcattgtgct ggtgattgct cttcgtgcgc ggttcgttcg
      481 agtaaacagc ttcagcgaca caaaacgccc gcagtctcgc tggaattacc ggccctggca
      541 attagccttc gtcccgacga aagttccgaa ggcttcttca acctgcaccc cgaatttgat
      601 ccattcagcc ctcgtggtcc gcctcattcc tggacctaat ccagcaatcg aaacaatcga
      661 caattgaaaa gtggctgaca cactcggacg atcactaatc gagtcatgcc agtcttaacc
      721 tcaggggaca actctcatga aggggctact ctacctcttt atcgcattcg tggtttcttc
      781 acccatcctc catgctcaac agacggttac ttcggcaacg ttgagcggaa gagtagaaga
      841 cagaagtggt ggcacaatct cgggcgccgc tgtctcggct acgaatttcg aaaccaatca
      901 gcgtttgacc acaacgacag atcaacaagg gcgtttcagg tttccactct tgcgcgtcgg
      961 cgactactcg ctcgaaatac aggcccaggg atttgaagaa tcaaaaaaga atctaaccct
     1021 gtcagtcgga caaacaattg atgttcttac caaactcgac atagcgggag tatccgagcg
     1081 agtaagtgtg aacatcgatg tgccgctcat tgaaacggtc cgcacacaag tagctgaaac
     1141 aattcgtccc gctgagatta gcgatttgcc attaaatggt cgcaactatc tcgaccttgc
     1201 attgcttgtc ccaggggttt cgccaaccaa cacagcaagc aatcaacgat tcgccgaaac
     1261 gtctgctgtg ccaggtcagg gaatttcgat agccggccaa cgcaacctct acaatagttt
     1321 tgtcgtcgat gggatgtcag caaacgatga cgctgctgat ctgactggca cctattacag
     1381 cgaagaagta atcgatcagt ttcaggtcgt gacttctgga ggcattgcag agtttggacg
     1441 ttcatccggt ggcgtcgtca atattcttac taagtcaggc acgaacgact ggcgcggtag
     1501 tttttacgga tttggacgaa accagcgttt cgatgctcgc aatccagttg cgacttcaaa
     1561 ggatctgttg acgcaggcac aatatggcgc aacgttaggc ggaccagtcc atcgcgaccg
     1621 gacttttctt ttcacaaact tcgagcaaac aagacgaaac tattcggcag tcctcacgat
     1681 cgctccctcg gcggtcaatt caatcaacca gcgattagac gcggttaact atcacggacc
     1741 gcgaattagt actggtgtag tgccggcgag tttcgatact acaaacttcc ttgccagaat
     1801 cgatcacaag cctggtgaac gacatcaact tagcggtcgg tacagtgtct atcatatcga
     1861 cgctgttaac tcgcgtacgg tcggcggcct aaatgcagta agccgtggct ccggtttgga
     1921 cgatactgat cagactggac aattcagtct catctcgacg ctgaccaaac acacactcaa
     1981 cgaagccagg cttcaggtaa cccgcagcag actcagcgct ccgatcaacg atacaaccgg
     2041 gccgtcagtt tcgatttccg gcgtcgcaaa cttcggcacc gctacatcgt ctccgcttgc
     2101 gagggacatc gacttgtttg aagctgtcga caacgtctca acgcagtggg ctaatcattc
     2161 attaaaagcg ggcttcgatt ttctctacaa caaagtgaac attgtttttc ctggaccaat
     2221 ccagggtgcg tataccttca gctctttgaa taacttcttg agcggaaact acac
//
LOCUS       DATCGC010002299         1488 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_165243, whole genome shotgun sequence.
ACCESSION   DATCGC010002299 DATCGC010000000
VERSION     DATCGC010002299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1488)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1488)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1488
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_165243"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            123..932
                     /locus_tag="VIJ87_21820"
     CDS             123..932
                     /locus_tag="VIJ87_21820"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF012673.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008934 - inositol monophosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006020 - inositol metabolic process
                     [Evidence IEA];
                     GO_process: GO:0046855 - obsolete inositol phosphate
                     dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HEY5447052.1"
                     /translation="MTPTKNELISLLEIAKHAANLAAAIHWRAIESRNFKIDTKSSKS
                     DLVTEVDRSAEQEIVKAIRAARPDDEIIGEEGTNLRGTTGVRWILDPLDGTTNFVHRY
                     PAHSVAVGVQIRERNMIGVVHDTFSNRVYAGVIGEGATCDEVPIKVRTEANLKQALIG
                     TGFLPDENVRRQQADLLRQVLPRVRDIRRSGCPSLDICAVASGTLDGYYECGLGPWDI
                     AAGAAIAEAAGATISLLNSKVLPNPVLVVANAGITAALVSVLVESGVVEQI"
     gene            1108..1377
                     /locus_tag="VIJ87_21825"
     CDS             1108..1377
                     /locus_tag="VIJ87_21825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447053.1"
                     /translation="MKPGEFFAKRKKQLIVAAAFFLALALNIAPDLIAGKPVAGAVWT
                     GLSEIPPMDYLMFAGFWYVLFIHRPKDDWSGNLTALNLSKSHSQK"
BASE COUNT          374 a          366 c          382 g          366 t
ORIGIN      
        1 ccgaataacc acctgataga gattcgcact tacgattgac ctcgatcctt tacggcattt
       61 agtcacatcg acggcattgg gacgtttact atgcttttga agattgaatt aactcccgca
      121 tcatgacgcc gacgaagaac gagttaatct cgttactcga aattgcgaag cacgctgcaa
      181 acttagcggc ggccattcat tggcgcgcta ttgagtcacg caacttcaag atcgacacga
      241 agagttcaaa atccgatctt gtaactgaag ttgaccgctc cgccgagcaa gagatcgtga
      301 aagccatccg tgcggcgcgc cctgatgatg agatcattgg cgaggaagga acaaacttgc
      361 gcgggactac aggtgtgcga tggattcttg atcctttgga cgggacaaca aattttgttc
      421 accgatatcc ggcacactcg gtggctgtcg gagttcagat tcgcgaacgc aacatgatcg
      481 gcgtagtaca cgatactttc agtaaccgag tttatgccgg ggtgatcggt gagggagcaa
      541 catgtgatga agtgccgatc aaagtgcgca ccgaagccaa tctcaaacag gctctcatag
      601 gcacaggctt cctaccggat gaaaatgtac gtcgccaaca ggcggacttg ctgcggcagg
      661 tattaccacg ggtcagggat attcgtcgca gcggttgtcc ctcgctagat atttgtgctg
      721 tagcctcagg aactcttgat ggctactacg aatgcggtct tggcccatgg gatattgcag
      781 ctggcgcagc aattgcggaa gcagcgggcg caacgattag tcttttgaac tccaaagttt
      841 tacctaatcc ggttttagtg gtggcgaacg ctggaataac cgcagcgttg gtttcagtgc
      901 tggttgaaag tggtgtagtc gaacaaatct aaccagcgct ctcaggtgca ctccgatgct
      961 cagtgacaat ttaacctctg ttctcgtaga aactcgcgag tcaatcagta atcaattgat
     1021 tggctaatag cggttctagt gccatactcc tttgtaccga aattgattcg actgattagc
     1081 agtgaatcta agcaggaggg tcagctcatg aaaccaggag agttttttgc taagcgaaag
     1141 aaacagctta ttgtcgcagc tgctttcttt ctggccctcg ctctcaatat cgctcccgac
     1201 ttgatcgcgg gaaaacctgt cgcgggcgca gtctggaccg gtctcagcga aattccaccg
     1261 atggactacc tgatgtttgc ggggttctgg tacgttctct ttatccaccg accaaaggac
     1321 gactggtcgg gtaatctgac ggcactgaat ctttcgaagt cgcatagcca aaagtagtct
     1381 ggctacgaaa cactcaatca accggcaacg gatcgcgaaa tccccgtttg agaatcttta
     1441 ttcgatcctt agtaccaagc ttgtcgtcag cggaaaacgc cgcccata
//
LOCUS       DATCGC010002300         1131 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_398531, whole genome shotgun sequence.
ACCESSION   DATCGC010002300 DATCGC010000000
VERSION     DATCGC010002300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1131)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1131)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1131
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_398531"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1007
                     /gene="dnaA"
                     /locus_tag="VIJ87_21830"
     CDS             <1..1007
                     /gene="dnaA"
                     /locus_tag="VIJ87_21830"
                     /inference="COORDINATES: protein motif:HMM:TIGR00362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA];
                     GO_process: GO:0006275 - regulation of DNA replication
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HEY5447054.1"
                     /translation="KSNELAAAAAHAVSQAPGRVYNPLFLYGDTGLGKTHLMQAVAHA
                     VMERQPDIRITFIGTEQFTNEMIGSIRERTTQDFRRRYRETDLLLVDDVQFLKGKEST
                     QEEFFHTFNALYEAGRQIILTSDRPPSEIPGLEARLVSRFQWGMVADIELPDLEHRIA
                     ILRNKAMIDHLEMTIPEDVIRFIAEHVRSNVRELEGSIIKLLAYASLKHREITVDVAR
                     EALRDKLRPGEAAGTSGIGLNPETIQQIVAKEWGVTTEGLRSKTRTKALTAPRQVAMY
                     LMRELLGLQLVEIGAAFGGRDHSTVIHSLERVGAMLREEPASAQRISRLRSLLEGLAT
                     "
BASE COUNT          268 a          298 c          316 g          249 t
ORIGIN      
        1 gcaagtcgaa cgagctcgct gccgcagctg cacacgctgt ctcccaggct ccgggacggg
       61 tatacaaccc gctgtttctc tacggagata caggactggg aaagacccat cttatgcagg
      121 ccgttgccca tgcagtgatg gagaggcagc ctgacatccg aatcacgttt attggcaccg
      181 agcagttcac gaacgaaatg atcggttcga ttcgtgaacg aaccacccag gattttcgcc
      241 gccggtatcg ggaaaccgat ctgctccttg ttgacgacgt ccagttcctc aaagggaagg
      301 aatcaactca ggaggaattt tttcacacct tcaatgcgct gtatgaggca ggtcggcaaa
      361 tcatcctgac gagcgatcga cctccgtcgg aaattcctgg gctggaggca aggttggtaa
      421 gccgctttca atggggaatg gttgccgata tcgagcttcc tgacctggag catcgaatcg
      481 caattctccg aaataaggcg atgatcgacc atcttgagat gactatcccg gaggatgtca
      541 tccggttcat cgcggagcat gtgcgttcaa atgtgagaga gctcgaggga tctatcatca
      601 agcttctcgc gtatgcatcc ctgaagcacc gtgagattac ggtcgatgtc gcccgcgaag
      661 cacttcgtga taagctccgg ccaggtgaag cagctggtac atccggaatt ggactgaatc
      721 cggagacaat tcagcagatt gtcgccaagg aatggggagt aaccactgaa gggctacggt
      781 cgaaaacccg gaccaaggca cttacggcac cccgtcaggt tgccatgtat ctgatgcgtg
      841 agctgttagg ccttcagttg gtcgaaatcg gggcagcatt cggcggccga gatcattcga
      901 ctgtcattca cagtctcgag cgcgtaggtg caatgctgcg agaggaaccg gcatcggctc
      961 agcgaatcag ccgtttacga tccttgctcg aggggcttgc tacctgactt cacatagcca
     1021 gtttatccac acggaacact gacgatttcc ggattcacgg ctgaaaagat tcggtttacc
     1081 tacccgcgaa tcgactactt ggctatgaga ctgagctgct gtggacatcg c
//
LOCUS       DATCGC010002301         1313 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_431779, whole genome shotgun sequence.
ACCESSION   DATCGC010002301 DATCGC010000000
VERSION     DATCGC010002301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1313)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1313)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1313
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_431779"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            205..>1313
                     /locus_tag="VIJ87_21835"
     rRNA            205..>1313
                     /locus_tag="VIJ87_21835"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          351 a          275 c          404 g          283 t
ORIGIN      
        1 tttccagatc cggcctggcc ggtaggcgcg tgattgcgcc gtctttgaca ttgtgaatgg
       61 gttctagaaa tcgatgcggg atgcgtctgt ttctatgggg ttggtctttg ggccgatcgc
      121 gtaggggaga tgcgttcaaa attgattgat gctgagtgta atatccgcag cagtgatatc
      181 aggtttgata ttggtggtgt gggttctcaa gcgtgaggta agggcatttg gtggatgcct
      241 tggcatgcac aggcgatgaa ggacgtggca cgctgcgata agcgtcggtg aggtgtgagc
      301 aacctttgac ccgacgattt ccgaatgggg aaacccatcc tcaccaatta atttctgcgc
      361 tggtttcggc cagtatggga gttaattggg aaggatatca ccgaagtgaa tacatagctt
      421 tggtgaagcg aacccggcga actgaaacat ctcagtagct ggaggaaaag acatcaaccg
      481 agattccgtt agtagtggcg agcgaacgcg gaccaggcca gtgcctggag ttcaactagc
      541 agaacacttt ggaaagagtg gccatagcgg gtgacagccc cgtatgcgaa agtgatgtat
      601 caggactcga gtagggcggg acacgtgtaa tcctgtctga acataggggg accaccctct
      661 aagcctaaat actcgtatat gaccgatagc gaactagtac cgtgagggaa aggtgaaaag
      721 caccccgatg aggggagtga aacagtacct gaaacggatt gcctacaagc agtgggagcc
      781 ctcttgaggg gtgaccgcgt acctcttgca taatgggtca gtgacttaat gtatcaagca
      841 agcttaagcc gataggtgta ggcgcagcga aagcgagtct gaatagggcg acttagtttg
      901 atgcattaga cccgaaaccc ggcgatctag gcatgaccag gatgaaggtg aggtaacact
      961 cactggaggt ccgaaccgat taacgttgaa aagttaccgg atgagttgtg tttaggggtg
     1021 aaaggccaat caagccggga aatagctggt tctccgcgaa aactattgag gtagtgcctc
     1081 ggacgaatac cgatgggggt agagcactgg atgggctagg gggacgcgag ttctaccaaa
     1141 cctaaccaaa ctccgaatac catcgagtaa tatccgggag acagacggcg ggtgctaagg
     1201 tccgtcgtca aaagggaaac agccctaacc tacagctaag gtccccaagt catcactaag
     1261 tgggaaagca tgtgggattt ccaaaacaac caggaggttg gcttagaagc agc
//
LOCUS       DATCGC010002302         1600 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_398659, whole genome shotgun sequence.
ACCESSION   DATCGC010002302 DATCGC010000000
VERSION     DATCGC010002302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1600)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1600)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1600
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_398659"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..473
                     /locus_tag="VIJ87_21840"
     CDS             <1..473
                     /locus_tag="VIJ87_21840"
                     /inference="COORDINATES: protein motif:HMM:NF014950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY5447055.1"
                     /translation="LYYRLAVIPVEIPALRERLEDVPLLVNHFLQKQSGGGPPIKIDA
                     QAIDLLSKYDYPGNVRELENAIERACALCENNTIMSGDLPPQIVEFANEASARKSRSA
                     MPVGKSLDEFIQEQEREYIEATLAKFKGSREKAASVLGISMATLYRKLEIKGKK"
     gene            complement(586..915)
                     /locus_tag="VIJ87_21845"
     CDS             complement(586..915)
                     /locus_tag="VIJ87_21845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447056.1"
                     /translation="MERDYMISSATKRTILRTIHLVLSIPILGYIYGKPAEVQEYANA
                     VRFVFVPVIILSGFWMYSGIVFAVIGVAVWLGAYYFVGIGTAILSQVALFVARKIYLM
                     VRARQSE"
     gene            complement(893..1465)
                     /locus_tag="VIJ87_21850"
     CDS             complement(893..1465)
                     /locus_tag="VIJ87_21850"
                     /inference="COORDINATES: protein motif:HMM:NF020397.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1801 domain-containing protein"
                     /protein_id="HEY5447057.1"
                     /translation="MNPGIESYLKKSKWQKELKKLRAIILSCPLTEELKWGKPCYTFQ
                     GKNVVILQGFKEFCALLFAKGALLKDPKGILEKPGQNTQGARRIPFTSVKEIVEIESV
                     LKAYLNESIQAEKAGLEVSYKRNPEPLPKELENKFNEDPGLKAAFYALTPGRQRGYIL
                     NLSSAKQSKTRESRVEKWRRHILNGKGLHD"
BASE COUNT          402 a          417 c          388 g          393 t
ORIGIN      
        1 atctttatta ccgactggct gtgatcccag tcgagatccc agcgctgcgg gagcgacttg
       61 aggacgtgcc actgctcgtg aatcattttc tccaaaagca atccggcggc ggaccaccta
      121 ttaagatcga cgctcaagcg atcgatttgc tttccaagta cgattacccg ggaaacgtgc
      181 gcgaactgga aaacgcgatc gaacgggcct gcgccttgtg cgaaaacaat acgatcatgt
      241 cgggggatct cccgccgcag attgtcgagt tcgctaacga agcatcagct cgcaagtcgc
      301 gctccgcgat gccagtcggc aagtcgctcg atgaatttat ccaggaacag gagcgtgagt
      361 atatcgaggc taccctggcg aagttcaaag gctcgcgcga aaaagcggcc agcgtccttg
      421 gtatcagtat ggccaccctt taccgcaagc tcgagatcaa aggtaagaag tagccgcggc
      481 cttgctcgct tgcttatcag agcagataga gcggacgacg ccacaaggct agcttacatc
      541 ttaacgccgt agtaggcggt tcgtgatcgt gtctgagcaa ccgagtcact ctgactgtcg
      601 ggcgcgaacc atcaggtaaa ttttgcgggc gacgaataat gccacttggc taaggatagc
      661 tgtcccaatt ccaacgaagt agtatgcacc gagccatacg gctacgccga taactgcgaa
      721 cactatgcct gaatacatcc agaagccgga caaaataatt accggaacaa agacaaaccg
      781 aaccgcgttt gcgtactctt ggacttctgc cggcttaccg taaatataac cgagtattgg
      841 gatacttaag acaagatgaa tcgtgcgaag aatggtgcgt ttggtggcgc tactaatcat
      901 gtaatccctt tccattgaga atgtgtcgtc tccatttctc aaccctggac tcccgagttt
      961 tggattgttt ggctgaagag agattgagaa tgtatccgcg ttgccgtccc ggcgtcagcg
     1021 cgtaaaaagc agccttgagg cccggatctt cattgaactt gttctcgagt tccttcggaa
     1081 gaggttctgg attccttttg taacttacct ccaaaccagc tttctcggcc tggatggatt
     1141 cattaagata ggctttcaac actgactcta tctcaactat ctccttcaca gatgtaaagg
     1201 gaatccggcg cgctccctgc gtattctgac ccggcttttc gaggatacct ttggggtcct
     1261 taagcaacgc accttttgca aacaaaagcg cacagaattc tttgaaaccc tgaagtataa
     1321 ctacgttttt gccctgaaag gtgtaacacg gcttgcccca cttcaattct tcggtcagcg
     1381 gacagctaag aatgattgct ctcaacttct taagctcttt ctgccacttg gatttcttaa
     1441 gataactctc gatgcccgga ttcatctaaa tggggtattg ataagcttgc gagactaaac
     1501 catcggctaa cctcacattg acaaagacca cccagggagt ttcgacgcct ggctaatcca
     1561 acttgtaagg agtccctcgt cgagttggtc attctcatag
//
LOCUS       DATCGC010002303         1055 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_431936, whole genome shotgun sequence.
ACCESSION   DATCGC010002303 DATCGC010000000
VERSION     DATCGC010002303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1055)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1055)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1055
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_431936"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..383
                     /locus_tag="VIJ87_21855"
     CDS             <1..383
                     /locus_tag="VIJ87_21855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447058.1"
                     /translation="KFIVGGNYKYTGFNAPAWLWQEGKGVSPIGVSTHGANKGNFTAL
                     DVSDDGKVVVGFVQKGQFKEKAFIWRSNSGAAYLDQFLSNHGVTIPPGWTLNVASIIS
                     PDGHIIYGWGINPDSDIEMFKVEL"
     gene            562..>1055
                     /locus_tag="VIJ87_21860"
     CDS             562..>1055
                     /locus_tag="VIJ87_21860"
                     /inference="COORDINATES: protein motif:HMM:NF012774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HEY5447059.1"
                     /translation="MNSQPVLNHRALILLSFFFQISVARGGNHWVTLTDCHYLPNPAN
                     DGDSFHVKAGKREYIFRLYFVDSPETDNSLPDRLAEQSQYFGATTPQTLQIGLEAEKF
                     TRQKLAGSFTVRTCKQDARGRSRLKRYFAFIQVGNTDLGEQLVANGLARVYGAANEAP
                     DMNTP"
BASE COUNT          265 a          285 c          276 g          229 t
ORIGIN      
        1 gaaaatttat cgtcggagga aactacaaat atacgggatt caacgccccg gcgtggctgt
       61 ggcaggaagg caagggcgtc agccccatcg gggtcagcac acacggagct aacaagggaa
      121 acttcaccgc cttggatgtg agcgacgacg gcaaggtcgt cgttgggttc gttcaaaaag
      181 ggcaattcaa agagaaggcc ttcatctgga ggagtaattc gggagccgcg tatctcgatc
      241 aattcctttc gaaccacggt gtcacgattc ctccgggctg gacgctcaac gtcgcctcaa
      301 tcatctcacc cgacggtcac atcatctatg gctggggcat taacccggat agtgatattg
      361 agatgttcaa ggttgagcta taaccgacgg acaagggctt aggcagttag tgcgttaggt
      421 ctaactccac cccactgggt tgacgtagaa gcatcgtata aacgctaata ggctcctgac
      481 cgcaatcgta atcgtaatcg tctcaggagg ggtgtcgatt atgagcacga tcacgagcat
      541 gagcacgaat tcaggcgttc aatgaattca cagcccgttt taaaccatcg ggcgctgatt
      601 ctactcagct tcttctttca gatctccgtc gcccgcggcg gcaatcactg ggtcacgcta
      661 acagactgtc actatctccc gaatcctgcc aacgacggcg atagcttcca cgttaaagcc
      721 ggcaaacggg aatacatctt tcggctttat ttcgtcgata gcccggagac tgacaacagt
      781 ctgccggatc gattggcgga acagtcgcaa tacttcggcg ccactactcc gcaaactctc
      841 cagatcgggt tggaagccga gaaattcacg cgccaaaaac ttgcagggtc tttcacggtc
      901 cgaacttgca aacaagatgc tcgcggtcgg agcaggttga aacgttattt cgcctttatc
      961 caagttggga acacggacct gggtgaacag ttagtagcca acggcctcgc tcgcgtttac
     1021 ggcgccgcca atgaagcacc cgacatgaac actcc
//
LOCUS       DATCGC010002304         1412 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_165535, whole genome shotgun sequence.
ACCESSION   DATCGC010002304 DATCGC010000000
VERSION     DATCGC010002304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1412)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1412)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1412
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_165535"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..806)
                     /locus_tag="VIJ87_21865"
     CDS             complement(<1..806)
                     /locus_tag="VIJ87_21865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447060.1"
                     /translation="MSKKIHTALCLVIGLVVIGFAASASSTLAQKTLTGEWTASTNGE
                     QNKLQLNFERHTSRGNRNQMGQSYEFSDLQGLSREQVNNGGPVKFSLVREAGRIDCDG
                     SFQNGKGSGTFQFTANQGFVAAMKSRGFDFDKIRSSDDEEGNSEDRLFAATALNVTTA
                     LADDLVASGFGKLNVEDLFKAAIFKIDSTFMREMKASGFPNLTMEDLVKARIFKIDAE
                     FVTKATQMGFDKEPFESLVKMQIFKVTPEFVAEVRNEGLTNLSVEEVVKLR"
     gene            952..1182
                     /locus_tag="VIJ87_21870"
     CDS             952..1182
                     /locus_tag="VIJ87_21870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447061.1"
                     /translation="MIGKIVLILGILGILLGGAVVLVSCLLPVLNEGRTSWDEAMFGI
                     IPGAVVLFGAFIVFIVGLIVVVMQRKKKAVVT"
BASE COUNT          324 a          341 c          373 g          374 t
ORIGIN      
        1 cgcagcttga ccacttcttc aaccgacaga ttcgtcaacc cttcgttgcg aacctctgcg
       61 acaaactccg gggtgacttt aaagatctgc atcttcacca ggctctcgaa tggttcctta
      121 tcaaaaccca tctgagtcgc cttcgttaca aactcggcgt cgatcttgaa gatgcgagct
      181 ttgaccaggt cttccatcgt cagatttggg aagccactcg ctttcatctc gcgcatgaat
      241 gtggaatcga tcttgaagat cgccgccttg aacagatcct cgacgttcag tttgccaaat
      301 cccgaggcga ccaaatcatc cgctaaagca gttgttacat tcagtgcggt ggcggcaaac
      361 agtcgatctt cagaattgcc ctcttcatcg tctgaagacc tgatcttgtc aaagtcgaaa
      421 ccgcgacttt tcattgcggc gacaaaaccc tgattggccg tgaactgaaa agtgcccgag
      481 cctttaccgt tctggaaact accatcgcag tcaattcgtc cggcctcacg cacgagactg
      541 aattttacgg gccccccgtt gtttacttgt tcacgactca aaccttgaag atcgctaaac
      601 tcgtaactct gtcccatttg gttccggttg ccacgcgagg tgtgtcgttc gaaattgagc
      661 tggagtttgt tttgctcgcc attggtggac gctgtccatt cgccggttaa ggtcttttgt
      721 gcaagcgtgg aacttgcgct tgctgcgaac ccgatcacta ccaaaccgat gacgaggcag
      781 agagccgtgt gtattttctt tgacatgatg gtgtttcctg aagttagatt cggtctacat
      841 cagagaaaca ccgcaatggg ttggtttgtg acgaagagaa gtggagatct ttgtgctttg
      901 tactttgaac ttggttggaa gctcaagcaa tgctggcgga aaggacctcg aatgatcgga
      961 aaaatcgtat taatcctagg aattctagga atcttgcttg ggggagcagt cgtactcgtc
     1021 tcctgtttgt taccggtgtt gaatgaaggt cgaacgagtt gggacgaagc catgtttgga
     1081 atcattcctg gagctgtcgt cctcttcgga gctttcattg tttttatcgt tggcctgatc
     1141 gtcgttgtaa tgcagcggaa gaagaaagcg gtggtgacat agacaagttg ggaacgggac
     1201 aggcgcccca gtagattgaa caagctggca aggtttttcg cctcagtgga ttgaacaagc
     1261 tgggaagggg gcagcggaaa ttgggcgcgt ggcaatattg gccccgagcg tgcccccgct
     1321 gagtcgcgat atgaaaaatc ttagctggtg caggttaatc tcagcggggg cacgctcagg
     1381 atcacagttg cgagacgtcc aaatttccgc tg
//
LOCUS       DATCGC010002305         1200 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_165536, whole genome shotgun sequence.
ACCESSION   DATCGC010002305 DATCGC010000000
VERSION     DATCGC010002305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1200)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1200)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1200
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_165536"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..442)
                     /locus_tag="VIJ87_21875"
     CDS             complement(<1..442)
                     /locus_tag="VIJ87_21875"
                     /inference="COORDINATES: protein motif:HMM:NF039315.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5996 family protein"
                     /protein_id="HEY5447062.1"
                     /translation="MNGASNQWTPLPFAEWKDTAETLHMWTQIVGKIRLTLSPWTNQS
                     WHVTLYVTSRGLTTSPIPHGAHTFEIQFDFIDHQLFIDKSDGARRAIPLKPQSVAEFY
                     GTVMKTLSDLELPVTINTMPNEIENPIPFDQDEKHRSYDREYANR"
     gene            complement(649..>1200)
                     /locus_tag="VIJ87_21880"
     CDS             complement(649..>1200)
                     /locus_tag="VIJ87_21880"
                     /EC_number="1.10.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF014386.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HEY5447063.1"
                     /translation="SVLDVVHPLPIISGLALVLGYAVLGGGWLKLKSNLSLQAFANRS
                     IRVSAPFFAILFGIASIYAVRIQPSIREKWASQGIALACLVGLFAIASGMLTTMTKKA
                     RPAVPFLLGQFLFIVGMSVTALLAFPYIVPFRVTLWEAASSSASQTFVLVGAAFVTPM
                     VLTYSAIAYWIFRGKTPEQGWQA"
BASE COUNT          322 a          297 c          314 g          267 t
ORIGIN      
        1 accggttggc atattcgcga tcataagagc ggtgcttctc atcttgatca aacggtatcg
       61 gattttcgat ctcgttaggc atggtgttga tagtcacagg cagctcaaga tcgctcaatg
      121 tcttcatcac cgtcccataa aactctgcaa ccgattgcgg ttttagtgga atggctcgtc
      181 gcgcgccatc gctcttgtcg atgaacagtt ggtgatcgat gaaatcaaac tgtatttcaa
      241 aagtgtgagc accgtgcgga atgggtgaag tcgttaggcc gcgtgaagtc acgtagagcg
      301 tgacatgcca ggattggttc gtccatggac tgagtgtcag tcgaatcttg ccgacgatct
      361 gtgtccacat atgcagggtc tcggcggtat ctttccactc tgcaaaaggc agaggagtcc
      421 attggttgga cgcgccattc actttgtatt tctaccctcg gttgcattac accgacggtt
      481 cggctccgca atgatttcga acacagattc cactctcttc atatactcca agacaacatc
      541 aaaatgccca ccgtaataac actcgggtga gcatcaccag aagagcaaaa gtaatgaggg
      601 acaatccgta gattgcaaag aaccatagaa gttgccgttt ccgagtcgtc acgcttgcca
      661 tccctgctca ggcgttttgc cccggaaaat ccaatacgca atggcggaat acgtgaggac
      721 cattggcgtg acgaaagcgg cacccaccaa cacaaaagtt tggcttgcgg aagatgatgc
      781 tgcttcccac agagtcacac ggaacggaac gatatatgga aatgcaagca aagctgtaac
      841 cgacatgcct acaataaaaa ggaactggcc tagaaggaag ggcactgcgg gtctagcttt
      901 cttggtcatc gtcgtcaaca tgcccgaggc aatggcaaac aaccctacga ggcaggcaag
      961 agcgattccc tgcgaggccc acttctcgcg gatgctgggc tggattctga cggcatagat
     1021 agacgctatg ccgaacaaga tcgcaaagaa cggtgcagaa acacggatgg agcgatttgc
     1081 aaaagcttgc agcgacagat ttgatttcag cttgagccat cctcctccaa gtacggcgta
     1141 gccgagtacg agagcgaggc cactgatgat agggagagga tgaacgacgt ctagaacact
//
LOCUS       DATCGC010002306         2052 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_398838, whole genome shotgun sequence.
ACCESSION   DATCGC010002306 DATCGC010000000
VERSION     DATCGC010002306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2052
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_398838"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..184
                     /locus_tag="VIJ87_21885"
     CDS             <1..184
                     /locus_tag="VIJ87_21885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447064.1"
                     /translation="DPPYRTSCKTEKDAVRPCCRSWRKFLRQHDFRPDQFLSEQENTT
                     MIAMKKHEQRARIRSL"
     gene            complement(291..533)
                     /locus_tag="VIJ87_21890"
     CDS             complement(291..533)
                     /locus_tag="VIJ87_21890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447065.1"
                     /translation="MNRIIVLVFLLSTVGLVGACSSSNAPVQTNVNSNQNLNANSVPA
                     NTGVVTNNNGNENTSGVRPINANNSNQNQKPANKNQ"
     gene            complement(556..1098)
                     /locus_tag="VIJ87_21895"
     CDS             complement(556..1098)
                     /locus_tag="VIJ87_21895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447066.1"
                     /translation="MANTTGSRTAQSGMVTGLFRDRESAERAYGSLTERGYGQDDVNL
                     VMSDETRKKHFAVDGRETELGSKALEGAGTGAAIGGAVGATLAAIAAIGTTLALPGLG
                     LLIAGPIAAGLAGAGAGGATGGLIGALVGAGIPEERVKKYEDGIKNGGIMMGVTPRNA
                     EDAAYFEEDWKRNRGEEVYR"
     gene            1477..>2052
                     /locus_tag="VIJ87_21900"
     CDS             1477..>2052
                     /locus_tag="VIJ87_21900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447067.1"
                     /translation="MRITRFICKRLISVTLLTFLSWTIANAYTIVFYSGNRVEIPDDF
                     IVTSNAVVYEAAPNINVSFRLISIDIEATEHANNDSAGSFLRRADAHRVQASQSTTAT
                     KNAARTITNRDLEPYERARLRSEETWEKRRKELGLPSLEETRREAARRDAALDEFLAK
                     KRLEEEANKRREHELMLIAEMAARMNATAYQG"
BASE COUNT          504 a          516 c          511 g          521 t
ORIGIN      
        1 tgatccgcca tatcgaacaa gctgcaaaac ggaaaaggac gcggtcagac cttgttgccg
       61 aagctggcgc aaatttttgc ggcagcatga ctttcgtcca gatcaattcc tcagcgaaca
      121 agagaatacg acgatgattg ccatgaagaa gcatgagcaa cgggctagga ttcgatcact
      181 ctgaatcgat cctcgaatac tcgggaacgc aagcaagctg caaaactcaa tcgcaacaaa
      241 aaggcgaagg acgctacgcc cttcgccttt tcgtcagtac cagaatgtcg ttactgattt
      301 ttgttagcgg gcttctggtt ctgattactg ttgttagcgt ttatgggacg aacgcctgag
      361 gtgttctcat tcccattatt atttgtgacc acacccgtat tcgcaggaac cgagttggca
      421 tttagattct ggttagagtt gacgttagtt tgaaccggcg cattactact gctacaagct
      481 cccacgaggc caaccgtcga aagtaggaaa actaagacta tgattcgatt cattctgttt
      541 cctttcgcga actgactagc gatagacttc ctcgccgcga ttcctcttcc agtcttcctc
      601 gaagtaagca gcatcttcgg cattgcgtgg cgttacaccc atcatgatgc cgccattttt
      661 tatgccatcc tcatatttct tgacgcgttc ttcgggaata cctgcgccaa ccaaagctcc
      721 tatcagtccg cctgtagcgc cgcctgcgcc tgcgccagcc aggcccgcgg caatcggacc
      781 agcgataagc aatccgagcc cgggtaaagc cagggttgtt ccgatagccg caattgctgc
      841 caatgtagcg ccgactgcgc caccgattgc cgctcccgtt ccggcaccct ctaaagcttt
      901 gctacctaat tcagtttcac gaccatcgac tgcgaaatgt ttttttctag tttcatccga
      961 catcacgaga ttgacgtcgt cttgtccata gcctcgttcg gtaagcgaac cgtatgctcg
     1021 ttcggcactt tctctgtccc ggaatagtcc agtaaccatg cctgactgtg ctgttcttga
     1081 acctgttgta tttgccattt tgattcccct ctgttcgttt ggtgttttaa gtgggtttgt
     1141 aattcatccc acgtgttgtc gtcgtcacga gcagcaaatt taacgccagc tattcatctc
     1201 gagcagaatt catgagggac gaattgccct accagagtgg atgtttgtga attgacacta
     1261 ccaaacagtc ccgtaactgc tagggaaggt ggcggcgttg aatgagttgt tttagaattc
     1321 aggtcaattg cgggacaact gacagagaag gatttgagag gattgcccaa tgaccagttg
     1381 ggaaaatgcc actgggcggc gcacaagcca tccttcacta ggtgaaactt gcttcgagaa
     1441 tcctacatgt cagatcgctg aaaaggaggg gatttaatgc gcataacaag gttcatctgt
     1501 aagcgactca ttagtgtgac attgttgacc tttcttagtt ggacaatcgc caacgcctat
     1561 acgatcgtgt tctacagcgg aaaccgggtt gagattccag atgatttcat tgttacttcg
     1621 aatgcggttg tttacgaggc tgctccaaac attaatgttt cgtttcgttt gatatcaatc
     1681 gatattgaag cgaccgaaca tgcgaacaat gattctgcgg gaagctttct gcgtcgcgct
     1741 gatgctcatc gagttcaggc gtcccaatca actacggcaa ccaagaatgc tgcccggacc
     1801 ataaccaacc gagacctgga gccctacgaa cgtgctcgac tcagaagtga ggagacttgg
     1861 gaaaagcgtc gaaaggaact gggcctgcct tcccttgagg aaacgcggcg cgaggcggct
     1921 cgaagggatg cggccctgga tgaattcctg gcaaagaaaa ggcttgagga agaagcgaat
     1981 aagcggcgcg agcacgagct tatgctgatc gcggaaatgg ctgcgagaat gaacgcaact
     2041 gcttatcagg ga
//
LOCUS       DATCGC010002307         1730 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_398993, whole genome shotgun sequence.
ACCESSION   DATCGC010002307 DATCGC010000000
VERSION     DATCGC010002307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1730)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1730)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1730
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_398993"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(224..544)
                     /locus_tag="VIJ87_21905"
     CDS             complement(224..544)
                     /locus_tag="VIJ87_21905"
                     /inference="COORDINATES: protein motif:HMM:NF019139.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rho termination factor N-terminal
                     domain-containing protein"
                     /protein_id="HEY5447068.1"
                     /translation="MAFTIEELKHKPVAELREIAKDIDHEAVKGYTQLNKEHLITALA
                     KALGLQHTHHDVVGVDKASIKARIRELKVKRSAAIEAHNHAELKNVRRAIHRLKRQIN
                     KATV"
     gene            complement(573..1055)
                     /locus_tag="VIJ87_21910"
     CDS             complement(573..1055)
                     /locus_tag="VIJ87_21910"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEY5447069.1"
                     /translation="MNQFLEDFRRTVADGKARLLAIPADDARVGKTGQWSPKQIVGHL
                     IDSAANNHHRFVRAQFTHDLVCPGYDQDTWVDTQKYNDEPWTDLVQFWASYNLHLAHV
                     ISVMPEETLSRIRAEHNLDKIAWKTVDKNSPTTLEYFIRDYAGHMRHHLSQILGSLTP
                     "
     gene            1242..>1730
                     /locus_tag="VIJ87_21915"
     CDS             1242..>1730
                     /locus_tag="VIJ87_21915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447070.1"
                     /translation="MKSSSLLLTFCLLLVVFQSPAKAQDKTSAKELALYSEIKSFSLT
                     GGAVDVNGLVIKKDRAQITLAGTVYLAAQKNGQIIGAVFIGEGTFALETPPTDFEQAN
                     IRRLTGMDTIKTDFKTAVFRFTDDTAQQLGTPRSAPLNERAQKLAQDVEPKLLKELGL
                     NLS"
BASE COUNT          419 a          417 c          445 g          449 t
ORIGIN      
        1 ttctgatcga cttctaagtc agtttagatc gaaagtcaat ggcgagaatg tagggttcat
       61 gaccaaattt ggaatctctg tgttacctct gtgccctccg tgtctctgtg gttgagcgag
      121 ttgctgagtt agatttcacc acggagacac agagggcaca gaggttgcgc agagaaattc
      181 aaactaggca ctaccaacaa gcagactgac cagtgccaaa tcactaaaca gttgctttgt
      241 taatctggcg cttcaggcga tggatagcgc gccggacgtt tttcagttcg gcatgattgt
      301 gagcttcgat tgcggcggat cgtttgacct tcagctctcg aatacgggct ttgatcgaag
      361 ccttgtcgac accgacaaca tcgtgatgcg tgtgttgtag gccgagtgct ttggccaacg
      421 ccgtgatcag gtgttccttg ttgagctgcg tatatccttt gacggcctcg tgatcaatat
      481 cctttgctat ttcacgtaac tcggcgacgg gtttatgttt gagttcctcg atagtgaaag
      541 ccataagtct ctcctgaagt ctgaattaac ttttaagggg ttaggctacc aagaatttgc
      601 gaaagatgat gccgcatgtg tccggcataa tctcggatga aatactcgag cgtggtgggt
      661 gagttcttgt ctacggtttt ccaggcgatt ttgtcgaggt tatgttcggc tcgaattcgt
      721 gagagcgttt cttcgggcat caccgatatg acatgtgcga gatgcaggtt gtaggaggcc
      781 cagaattgaa ctaggtccgt ccacggctcg tcgttgtatt tttgagtatc aacccaggtg
      841 tcctggtcat agccaggaca aaccaggtcg tgggtaaatt gagcacgcac aaaccggtgg
      901 tgattgttgg ccgctgaatc aatgaggtgc cctacgatct gttttggtga ccactgtcca
      961 gtctttccga ccctggcgtc gtcagccggt atagcaagca gtcgtgcctt cccatccgca
     1021 accgtacgtc tgaaatcttc gagaaattga ttcatgaagt aaaaccgctt gggagcaggc
     1081 tccgtaaatc aaaattgtaa gtggaccgat tgctaggata ataacgcaac tggcactggg
     1141 ctgagaaact gggctgaatt aatgcggtgt tagttgactc accacggcaa aaatcgtagt
     1201 ttgctcgcgc cttgcaaagt tctctcgtcg gagcctcgca aatgaaatcg tcatccctcc
     1261 ttctgacttt ctgcctgctt ctcgttgttt ttcaatcacc ggcaaaggcg caggacaaaa
     1321 cctctgcaaa agagctcgct ctgtatagtg agatcaaatc cttctcgctc actggtggag
     1381 cagtggacgt aaacggtcta gtgattaaga aagaccgtgc ccaaattact ttggcaggaa
     1441 ctgtatatct cgcggcccaa aagaatggtc aaatcatcgg tgcagtcttc ataggcgaag
     1501 gaacgtttgc tcttgaaacc ccacccactg actttgaaca ggcgaacatt cgcaggctga
     1561 cagggatgga cacaatcaag acagacttca aaaccgccgt cttcagattc accgacgaca
     1621 cagcccaaca actcggcacc ccgcgttcag caccactcaa cgagcgtgca cagaagttgg
     1681 cccaggatgt cgagccgaag ctgcttaagg aactcggtct gaatctttcc
//
LOCUS       DATCGC010002308         1092 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_399173, whole genome shotgun sequence.
ACCESSION   DATCGC010002308 DATCGC010000000
VERSION     DATCGC010002308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1092
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_399173"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(428..>1092)
                     /locus_tag="VIJ87_21920"
     CDS             complement(428..>1092)
                     /locus_tag="VIJ87_21920"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY5447071.1"
                     /translation="DGEAYGRARDAYAKDSSLPRPDINVVLEALVPYVRGQQPVIFRA
                     DREAEIRGAIKFAEEMKLKPIILGGDDAWKVASLLKEKNVPVILTGIFGLPGREDDPY
                     DVLYESASKLQQAGVRFCISSGDPGAEARNLPMYAGMASAYGLSKADALKAVTLYPAQ
                     IMNVADRLGSIEVGKMANLVVTDGDLLEIRTHIHYLFIDGRKVQLTSRHTELNDAFKD
                     RK"
BASE COUNT          259 a          310 c          272 g          251 t
ORIGIN      
        1 ctggggagac gcttttgtga gcaagcagaa tggaaaaaac tctacggaac cccgaggtga
       61 attgaacaag ctgggaaggg ggcagcggga aactggacgc ctcacaaaat gtggccccga
      121 gcgtgccccc gccggactca gcactttgac actcaaggtt tccaatggcg actcagcggg
      181 ggcacactcc gggctaaatt tgcaacgcgt ccaagtttcc gctgccccct tcccagcttg
      241 ttcgacacac tgaggcgccc aagtttgcac ttccctattt gtttcaattc acttcatagt
      301 tcaaacatta tccgtgacct gtcccagggt tgatgcaagc cggggcattg gggcgtaccc
      361 cactcgtccg ttatagaacc gtggggtcga acgaagctca aagaccaaag ttcgaagacc
      421 aaactcttca cttcctatcc ttaaacgcat cattcaactc agtatgtctg ctcgtcaatt
      481 gaactttacg tccatcgatg aacaagtagt gaatgtgcgt tcgaatctcc agcaagtcgc
      541 cgtcagtcac aacgaggttc gccatcttgc caacttcaat tgaaccgaga cgatcagcga
      601 cgttcatgat ttgcgctggg tagagcgtga ctgccttcaa cgcatcagct ttcgacaatc
      661 cataggctga ggccatccct gcgtacatcg gtagatttcg tgcttcagcg cccgggtcgc
      721 cgctggagat gcagaaacga actccagcct gttgaagttt cgatgcgctt tcgtaaagaa
      781 catcataagg gtcgtcttcc cgacctggga gtccgaagat tccagttagg atcaccggaa
      841 cgttcttctc ttttaagaga ctggccacct tccacgcatc gtcgccacca agaatgatcg
      901 gtttgagttt catctcctcg gcaaacttga ttgcaccgcg aatctcggct tcacgatccg
      961 cgcgaaagat caccggttgt tggccgcgaa cgtaaggcac aagcgcttcg agcacgacat
     1021 tgatatccgg gcgcggcaag gagctgtctt ttgcgtaggc atcacgtgca cgaccgtaag
     1081 cttcaccatc gc
//
LOCUS       DATCGC010002309         2604 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_399303, whole genome shotgun sequence.
ACCESSION   DATCGC010002309 DATCGC010000000
VERSION     DATCGC010002309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2604
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_399303"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(164..511)
                     /locus_tag="VIJ87_21925"
     CDS             complement(164..511)
                     /locus_tag="VIJ87_21925"
                     /inference="COORDINATES: protein motif:HMM:TIGR00377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEY5447072.1"
                     /translation="MAELNIAERQAGDVTVLDMSGKITIGEGSVALRTAIRRLLEEGK
                     KRILLNLAGVGYIDSSGIGELVSSFTAIGKENGQLKLLNLTQKLQDLLTITKLLTVFD
                     VYESEAEALNSFK"
     gene            complement(540..953)
                     /locus_tag="VIJ87_21930"
     CDS             complement(540..953)
                     /locus_tag="VIJ87_21930"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY5447073.1"
                     /translation="MTVETTELTLPSRIETVAAAAAAVAEFMSRSGVSDDAAFGIDMA
                     VREAVTNAVVHGNSQAEDKVVDIVLKSSPDAVEISVHDQGPGFNPSEVPDPTAEENIL
                     KTSGRGIFFMRSFMDEVVWSLPPEGGTTVRMLKRR"
     gene            complement(1220..1606)
                     /locus_tag="VIJ87_21935"
     CDS             complement(1220..1606)
                     /locus_tag="VIJ87_21935"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY5447074.1"
                     /translation="MSALLSPTVLVAEDSGDTRHMLKRALEIRGYRVLEAENGRQALE
                     LTRQYKPHLIIVDLNMPVLDGLETIKYVRMMKGASEQVPIVAITAFDVYGMEEAASEA
                     GCNEYISKPFDLDYLEKVMKGLGFIL"
     gene            1764..>2604
                     /locus_tag="VIJ87_21940"
     CDS             1764..>2604
                     /locus_tag="VIJ87_21940"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: protein motif:HMM:NF012497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003866 - 3-phosphoshikimate
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HEY5447075.1"
                     /translation="MKLNRAHRIQGRLRLPGDKSISHRAAIIASIASGRSTIKNYSTA
                     VDCSSTLACLKQLGVRITRSGTIVEIDGAERLQRPDSPLDCGNSGTTIRVLSGVLARQ
                     DFSCELSGDSSLNSRPMGRIVQPLELMGARFESNEGKPPLTVHGTTGINPIIYELPVA
                     SAQVKSAILFAALGASGRTQVKESSLSRDHTERLFNGFGVTVTTDEDLTVTMDGPAQL
                     FGGDITVPGDVSSAAYFVAAAMLLPGSDLVIEDVGLNPTRAEFLSVLTSWGADISTDG
                     IELE"
BASE COUNT          635 a          689 c          639 g          641 t
ORIGIN      
        1 cgagaccccg aatagcatca cgaagtgcaa tgctaccatc gcccattctc accgcacctc
       61 tcatatcaag gatggtgaca tcgccggctt gtcgttcatt cacttcgagc tcagccattt
      121 atcttctcca gtccgccgaa cgttttcaga aatgctcaac caactatttg aagctgttga
      181 gtgcctctgc ttcgctttcg taaacatcaa aaactgtcag gagcttggta atggtcagaa
      241 gatcctggag tttctgcgtg agattcaaca acttcagttg gccattttct ttgccgatgg
      301 cagtgaaact ggacaccaac tcgccgatac cgctggaatc gatgtatccg acaccagcca
      361 ggttcaacaa gatccgtttc ttgccctctt caagcaatcg acgaatagcc gtgcggaggg
      421 caacactgcc ttcaccaatc gttatctttc cactcatgtc aagaacggtt acatcccctg
      481 cttgacgttc agcgatattc aactcagcca tcttagaact ctcctttatg caattgcgat
      541 taacggcgct tgagcatgcg cactgttgta ccaccttcag gaggcagcga ccagacaact
      601 tcgtccataa agctgcgcat gaaaaagatg cctcgacctg aggtctttaa tatgttttct
      661 tcagctgtcg gatctgggac ttcgcttggg ttaaacccgg ggccttggtc gtgaacgctg
      721 atttcaacag cgtcaggcga gctcttcaag acgatgtcaa cgactttgtc ttcggcctgg
      781 ctgtttccgt gaactacggc attggttaca gcctcgcgaa cagccatatc aataccaaac
      841 gcagcgtcat cgctgacacc tgagcgactc atgaactccg caaccgcagc ggccgcggca
      901 gctacggtct caattcggct gggtaaagtt agttccgtcg tctctaccgt cacaatgatc
      961 aggcatggcc tcgaaagcca tagcgggagg accctggctg ctttctttaa cgcttcccgg
     1021 aagtccgagg gtttaacacg ctggctagct acgtgtcaag aatagcccca ttttttgcta
     1081 gcctgatgtt ctcaaagtgt taggaagtta ttagaagggc cgttaataga ttcggatagt
     1141 caataggtga gcaactcgaa cgggcttctt attgtggggc tgatcactaa cggataagaa
     1201 agagctgtga aaagaccatt cacagaataa agcccagccc cttcattacc ttttccagat
     1261 agtcgagatc gaaaggcttg ctgatgtatt cattgcatcc agcttcgctg gcggcttcct
     1321 ccatgccgta aacgtcgaat gcggtgatgg caacgatagg aacctgttcc gaggcccctt
     1381 tcatcatgcg aacgtacttt atggtttcca aaccatcgag tacgggcata ttcaaatcga
     1441 caatgatgag atggggcttg tattggcgag tgagttccag cgcctgacgc ccattttcag
     1501 cttccaggac acggtaacct ctaatttcga gggctcgctt cagcatatgt cgggtgtcac
     1561 ctgagtcttc ggcgaccagg acagttggag aaagtagtgc cgacactgat tccctttcgg
     1621 ctaatgtgcc taatgtatga tggtcgaatt gaaggggtac aacgggggta ctacgggggt
     1681 acgaataaga ctggacactt atagcagact ttctcccaaa cgccactccc aagacacaca
     1741 aaaccatgga aacattgtca taaatgaaac taaaccgagc gcaccgaatt caaggacgac
     1801 tccgattacc cggcgacaaa tcgatctcgc accgggctgc aatcatcgcc tcaatcgcgt
     1861 cgggtcgatc gacaatcaaa aactattcga ccgccgtcga ttgctcttct acactcgcat
     1921 gtctcaagca actaggagtt cgcattacac gatccggcac catcgttgag atcgatggag
     1981 ctgagagatt gcaaagacct gactcacctc tcgactgtgg gaacagtggc accacaatta
     2041 gagttctctc gggcgtgttg gcccggcagg acttttcatg tgaactttct ggcgacagtt
     2101 cgctcaactc gcgtccgatg ggaagaattg tccagccact cgagttgatg ggagcaaggt
     2161 tcgaatcgaa tgaaggcaag ccgccgctca cagttcatgg cacgacgggg attaatccga
     2221 ttatttacga actcccggtg gcgagtgcgc aggtgaagtc ggcaattcta tttgctgccc
     2281 tcggagctag cggtcgcacc caggttaagg agtcgtcgct ttcgcgagat catacagaac
     2341 gtctattcaa tggattcgga gtcacagtaa caactgacga ggatttgaca gtcaccatgg
     2401 atggcccagc gcaactattc ggcggggaca tcaccgtgcc cggcgatgtt tcgtcagcag
     2461 cttattttgt cgcagccgcg atgttgttac cgggctctga ccttgttatc gaagatgttg
     2521 gattaaaccc tacccgagct gagttcttat ctgtactcac ttcgtggggc gcggatatct
     2581 caactgacgg aatcgagctc gaac
//
LOCUS       DATCGC010002310         1029 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_399423, whole genome shotgun sequence.
ACCESSION   DATCGC010002310 DATCGC010000000
VERSION     DATCGC010002310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1029
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_399423"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..438)
                     /locus_tag="VIJ87_21945"
     CDS             complement(<1..438)
                     /locus_tag="VIJ87_21945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447076.1"
                     /translation="MFDNLVESSSHKDDISRKGSFVAATALIYGVLMLAFFVAGIYWY
                     DNHLGEMELELTTLVAPVPVPQQQKADEPKQEVKPTKVEQNVDVRKELIADVTRTELV
                     PKEVSAKASDVPPVRRGVTTVVGNESSNAAAPMPAGPGAGTVVA"
     gene            complement(808..>1029)
                     /locus_tag="VIJ87_21950"
     CDS             complement(808..>1029)
                     /locus_tag="VIJ87_21950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447077.1"
                     /translation="LLIGIIFGTYSSVAIASPIMVWWEQRIEAANRTAALSFNKPVRG
                     GVQSPSKGASSRDSIAAQAGKRSSGASRV"
BASE COUNT          255 a          287 c          248 g          239 t
ORIGIN      
        1 agcgaccaca gttcccgcac ctggaccggc tggcataggt gctgccgcgt tggacgactc
       61 gttaccgacc acagtcgtta cgccacgtcg aaccggcggc acatcactgg ccttcgccga
      121 cacttctttc ggcaccaatt cggttcgagt tacgtcagca atcagttctt tacgaacgtc
      181 gacattttgc tcaaccttag tcggtttgac ttcttgtttt ggctcatctg ctttctgctg
      241 ctgaggaact ggaaccggag ctacaagggt ggtcagttca agctccatct caccgagatg
      301 gttatcgtac cagtagatac cggcaacgaa aaaagccaac atgagcaccc cgtagattag
      361 cgcggtggcg gcgacgaatg agccttttcg cgaaatatca tccttgtgcg aactcgactc
      421 aacgagatta tcgaacattt atcttgtcct ccaattccgg tgccaaatgg atcaggggtt
      481 acgaattgta agtagcttag tgcatctcaa acgtcgactg acgagagccc gcttgagttc
      541 cgtctagatg gggaaacagc agctcctgcg atatttgagc acaccgaata gacttgaaag
      601 ccgctgtgcg agaatagtaa ctcgccggcc tactcaacac accgccgccg cgcccacttc
      661 ggtttgactc aacgcagggt cgactcttga gatatttaat tggccagcaa cggccgcagt
      721 ctaagccgcc ttcagtttca aagtcaagcg caaactagaa caaagggcta ttaagtcgaa
      781 gggaattccc gaagaaaaga attgcgttca aactcgactc gcaccactgg atcttttacc
      841 ggcctgggcg gctattgaat cgcgactcga ggctcccttt gacggcgact ggacaccgcc
      901 tcttacgggt ttattgaaac tcaacgcagc ggtacgatta gcagcctcga tcctttgctc
      961 ccaccacacc ataatcggac tcgcgattgc cactgacgaa taggtgccaa aaattattcc
     1021 gataagtaa
//
LOCUS       DATCGC010002311         1536 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_432620, whole genome shotgun sequence.
ACCESSION   DATCGC010002311 DATCGC010000000
VERSION     DATCGC010002311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1536
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_432620"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..240)
                     /locus_tag="VIJ87_21955"
     CDS             complement(<1..240)
                     /locus_tag="VIJ87_21955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447078.1"
                     /translation="MRKLSLLCRSCVLLFAASAGLAQQQPTSTTSVDAQVLEPGKPIE
                     RQISGGETHAYKIALNAGQYLDAAVNQRGIDVVVRV"
     gene            complement(446..1018)
                     /locus_tag="VIJ87_21960"
     CDS             complement(446..1018)
                     /locus_tag="VIJ87_21960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447079.1"
                     /translation="MDWKIWIAPSVTLFVAFVGFAAKYLNDIKLAQRRDRLDRINQQL
                     KFLYGPLYATDQAARTAWLGFRSKYRPEKESYWRSSPPPTEDEAEAWRLWITEVFMPL
                     NLRLEKIIVENADLLIEEEMPESLLLLVAHVSAYKAVLKNWENGNYSEHTSLVNYPWR
                     DVRTYVQASFMNLKQEQARLLGLLHGKKTA"
     gene            complement(1029..>1536)
                     /locus_tag="VIJ87_21965"
     CDS             complement(1029..>1536)
                     /locus_tag="VIJ87_21965"
                     /inference="COORDINATES: protein motif:HMM:NF028007.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051219 - phosphoprotein binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HEY5447080.1"
                     /translation="VRFVKVRMTLQAIIISAVVGIITSAVTAYITTRLKLKEERDKWR
                     REFAFKFAEAQVANNGVAQKVATQFAIGVLVRNPDTPEREKTFVPPNCRLTVGRAPDC
                     TIVLDDPKVSRIHFTFWADDTDVYVEEIGRSANVTLLNGEKITARHILRTDDAITVGS
                     TTFRFQKL"
BASE COUNT          368 a          391 c          378 g          399 t
ORIGIN      
        1 cactcgcacc actacgtcaa tcccgcgctg attgacggct gcgtccaggt actgtcccgc
       61 gttgagcgcg atcttgtaag catgtgtttc gccgccgctg atctggcgct caattggctt
      121 acccggctca agcacctgag cgtcgacact agttgttgaa gttggttgtt gttgagcgag
      181 gccggcacta gcagcaaaaa gcaaaacgca cgaccgacat aagagagata gtttgcgcat
      241 tcttgcctcc ggatcagtct gcaaaaactg tcagagttgc cgatgtaatt ccgtctatgt
      301 atttcaacga cggaactaat tcagacacac cccaaagact aagactacca agagcggtct
      361 ccacttcgat ttcatgagag gtgagcgccg aacgggttaa gccgacgcga attcacactc
      421 cgcaatttcg atttccgtaa ttctgttatg cggtcttctt cccgtggagt agccccaata
      481 gtctcgcttg ttcttgctta aggttcatga aagacgcctg aacgtaagtg cggacgtctc
      541 gccacggata atttacgagt gaagtgtgct cggaataatt gccgttttcc caattcttca
      601 gtacggcctt ataagcagat acatgagcga cgagcaggag caaagattcc ggcatttctt
      661 cttcgataag aagatcagca ttttccacga tgattttttc caggcgcaaa tttaagggca
      721 tgaacacttc ggtgatccag agacgccagg cttcagcctc atcctccgtt ggtggcgggg
      781 acgagcgcca atagctttct ttttccgggc gatacttgct tctgaatcca agccaggcag
      841 ttctggccgc ttggtcagtg gcatagagcg ggccgtatag gaattttagt tgctgattga
      901 tccggtcaag cctgtctctt ctttgggcca gctttatgtc attcaggtac ttcgccgcaa
      961 agccgacaaa cgcgacgaaa agtgtgaccg acggtgcaat ccagatcttc caatccataa
     1021 ttagatgatc acagcttttg aaaacgaaaa gtagtagagc cgacggtaat agcgtcgtcg
     1081 gttcttagaa tgtgtcgagc cgtaatcttt tctccattga ggagagttac gttggcggat
     1141 cgaccaatct cctcgacata tacgtccgta tcgtcggccc aaaaggtaaa gtgaattcgc
     1201 gaaaccttcg ggtcatccaa cacaatcgta caatcgggag ccctcccaac cgttaggcga
     1261 cagtttggag gcacgaaggt cttttcgcgt tccggcgtat ccgggttccg cactaaaacg
     1321 ccaatggcaa actgagttgc cactttttgt gcgacgccgt tgtttgcaac ctgcgcttcg
     1381 gcaaacttga aagcaaactc cctccgccat ttgtctcgct cttcttttag ttttagacgt
     1441 gttgtgatgt aggcagttac ggcactagta ataatgccta caactgccga gatgatgatg
     1501 gcctgtagcg tcatacgaac tttgacgaat cttacg
//
LOCUS       DATCGC010002312         1178 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_166381, whole genome shotgun sequence.
ACCESSION   DATCGC010002312 DATCGC010000000
VERSION     DATCGC010002312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1178)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1178)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1178
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_166381"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1178
                     /locus_tag="VIJ87_21970"
     CDS             <1..>1178
                     /locus_tag="VIJ87_21970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447081.1"
                     /translation="MGHARYAQVRIAVDGTHYLKGMAVYKDDLPDGVDLMFNTNKTRA
                     EAPSKHDAMKAMKDDPDNPFGAVIRQRLDAKGNVTSALNIVGTKEGSGEEGSWDTWSR
                     SLPAQMLSKQHPTLAKAQLAVTRENRQKEFDRINALTNPVVKKKLLENFADETDSAAV
                     HLAAAAMPRQATRVLLPIPQMKPNEVYAPGFNDGDRVALVRFPHGGTFEIPQLTVNNR
                     VPAAKKLLGASPKFDAIGIHHTVAERLSGADFDGDTVLVIPNNQGRVKSTPPLKGLEG
                     FDARREYGPHDGMRTIEGGTYNAKTKEVEFHPGQKKDPGNKGKEMGKITNLIADMTVH
                     GASSDKMARAVRHSMVVIDAEKHHLDYRASAEKNGIAALKKEFEGGPRAGASTLITRA
                     "
BASE COUNT          291 a          292 c          328 g          267 t
ORIGIN      
        1 catgggacat gctcgttacg cacaggttcg tattgcagtt gacggtacgc actatctaaa
       61 gggaatggcc gtttacaagg acgatcttcc tgatggtgtg gatctcatgt tcaatacgaa
      121 caagactcga gctgaggcac cgtctaagca cgatgccatg aaggcgatga aggacgatcc
      181 cgacaatccg tttggcgccg tcattcgtca gaggctcgat gcaaagggca acgtcacttc
      241 ggctctcaac atcgtgggaa cgaaggaagg ttccggagaa gaaggttctt gggatacctg
      301 gagtcgaagc cttcctgcgc agatgctttc caagcagcat cccacgttgg ccaaagcaca
      361 gttggccgtt acgagggaga accgtcagaa agagtttgac agaatcaacg ccttgaccaa
      421 tcctgtggtc aagaagaagc ttctcgagaa cttcgctgat gagactgatt ccgcagcagt
      481 tcatcttgcc gctgctgcaa tgccgaggca ggcaactcga gttctgttgc ctattcctca
      541 gatgaagcca aacgaggtgt acgctccagg cttcaacgat ggggatcgtg tggctctggt
      601 tcgattccct catggcggta cgttcgagat tcctcagctt accgtcaaca accgtgtccc
      661 tgccgcaaag aagcttctgg gcgcaagccc taagttcgat gcgatcggaa ttcatcacac
      721 tgtggcagag cgtctctctg gtgcagactt tgatggtgat acggtcttgg tcatccctaa
      781 caatcaggga cgtgtaaaaa gtaccccccc tctaaaagga ttggaggggt tcgatgcgag
      841 gcgtgagtat gggccccatg atggtatgcg taccatcgaa ggcggtacct acaacgctaa
      901 gaccaaggaa gtagagttcc atcctggtca gaagaaggat cctggtaaca agggcaaaga
      961 gatgggaaag atcaccaatc tcattgctga catgactgtt catggtgcgt cttcggacaa
     1021 gatggctaga gcagtccgcc attccatggt tgtcatcgat gctgagaagc atcaccttga
     1081 ttaccgagct tctgctgaga agaacggaat cgctgctctc aagaaggagt ttgagggcgg
     1141 ccctcgtgct ggtgcttcta cgctcatcac tagggcta
//
LOCUS       DATCGC010002313         1559 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_166421, whole genome shotgun sequence.
ACCESSION   DATCGC010002313 DATCGC010000000
VERSION     DATCGC010002313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1559
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_166421"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..413
                     /locus_tag="VIJ87_21975"
     CDS             <1..413
                     /locus_tag="VIJ87_21975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447082.1"
                     /translation="DEENGQNVPHPVKTEALASLVADDVADLSWNRRPRIGSNARGKE
                     NFGLSRFFHHRERRQNAANAQPQSGLAIFDVLKVNEYVDRFWIFTCPRRQLRAATSCW
                     QSRALLAPSLDEVNRRSTPSSVQMQNPSLEDSTM"
     gene            435..869
                     /locus_tag="VIJ87_21980"
     CDS             435..869
                     /locus_tag="VIJ87_21980"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEY5447083.1"
                     /translation="MTKFILILLIALVFEAIGVVFLSGGLNQIGEPKALNAAEIMSLI
                     KRGATNKNILTGVFFEAIFFGFLLYLLSQKDVSIVWPLTALGFVITSAAARIFLKEEI
                     SSLRWAGICLIVLGAGLVTWSGKRQEKQPEERSPASTDYGLR"
     gene            974..1525
                     /locus_tag="VIJ87_21985"
     CDS             974..1525
                     /locus_tag="VIJ87_21985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447084.1"
                     /translation="MDRKSVAPLALVSVFVVIPTGTSQVTAANMRSFIEAVRRKAPVV
                     YVGSVREVSLRTRTKFDIKARAIVDVLSVMRSPGTNPHEATIDYSSYDDKTPILAGGP
                     QYQLKPGVKVLAFANSFASTIPPGYLVQGSRDELLQRVESLRDVLRQMSADQLKVNEI
                     TEEDRRIQLALYEKLCAYLRTPK"
BASE COUNT          370 a          398 c          408 g          383 t
ORIGIN      
        1 gagacgagga aaacggtcaa aatgttccgc atcccgtaaa aactgaagcg ctcgcatccc
       61 tcgttgccga tgatgtagcg gatctgtctt ggaatcggcg cccgcggatc gggagcaacg
      121 cccgtggcaa ggagaacttc gggctcagcc gcttctttca ccaccgcgag cgtcgacaga
      181 acgctgccaa cgcgcaaccg caatctggct tagcgatctt cgacgtattg aaggtaaacg
      241 agtacgtcga tcgtttctgg atctttacgt gtcctcgaag acaactgcgg gcggcaacat
      301 cttgctggca atcccgagct ttactcgccc cgtcgctcga tgaggttaac aggcgttcga
      361 cgccctcatc agttcagatg caaaatccgt cgttggagga ctcgacaatg tgaattgatc
      421 cagtatcagc atttgtgacg aagtttattt tgattctgct gatcgcgctg gttttcgaag
      481 cgattggcgt ggtgtttctc agcggcggcc ttaatcaaat tggggaaccc aaggcgctca
      541 atgccgcgga aatcatgtcg ttaatcaaac gtggtgcgac aaacaaaaac attttaactg
      601 gtgtcttctt cgaagccatt ttctttggct tcctactcta tttactttca caaaaagacg
      661 tcagcattgt ctggccgttg actgctcttg gtttcgttat cacgagcgcg gcggccagaa
      721 tttttctcaa agaagagata tcgagtcttc gctgggccgg aatttgtctg attgtgttgg
      781 gcgcagggtt ggttacgtgg agcggaaagc ggcaggagaa acaacccgaa gagcgatcgc
      841 ccgcttccac ggattacggg cttcgataac cgcggaccga ttccttgcca ttcaacctaa
      901 cggggttttg gctagagatg tgagttttcg ctcgcgacac ctcacacctt taattagaac
      961 gtcagtagat tgcatggata gaaagagcgt cgcaccatta gcactggtct cggtattcgt
     1021 tgtcatcccg actgggacga gccaagtgac ggcagccaat atgcgtagct tcatagaagc
     1081 tgtccggaga aaggcccctg tcgtttatgt tggctctgta agagaagtga gtctgcgcac
     1141 acgaaccaag ttcgacatca aagcacgggc gattgtggac gtcctatcgg tgatgcgaag
     1201 tcctggcacg aaccctcacg aagctacgat cgactattcg agttatgacg ataaaacgcc
     1261 gatattggca ggcggcccac aatatcagct aaagcccggc gtcaaggttc tcgcctttgc
     1321 aaactccttc gcaagcacca tcccgcccgg atatctcgtt cagggtagcc gcgatgaatt
     1381 gctgcagcgt gtcgaatcac tccgcgatgt tcttaggcaa atgtctgccg accagcttaa
     1441 ggtgaatgaa attactgagg aagatcgtcg tattcagctc gccttgtacg aaaagctttg
     1501 cgcgtatctt cgtacaccca aatagttctc aatatgctgt cgagactgtc actatgagc
//
LOCUS       DATCGC010002314         1230 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U7796
            k141_432706, whole genome shotgun sequence.
ACCESSION   DATCGC010002314 DATCGC010000000
VERSION     DATCGC010002314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962168
            Sequence Read Archive: SRR3988231
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 1230)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1230)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 14:26:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,231
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 168
            rRNAs                             :: 3, 19, 56 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 18, 55 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 1 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 5 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1230
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_432706"
                     /isolate="SMAG_U7796"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="71.3 N 156.61 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..524)
                     /locus_tag="VIJ87_21990"
     CDS             complement(<1..524)
                     /locus_tag="VIJ87_21990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447085.1"
                     /translation="MSRQSFVPSCVGQNLQPLNNATLKHAAVVAGPKIVFGRVVDGNH
                     DIFVMDFDGSNETRLTTHLGYDDQPKWSPDGSKIVFMSGRDGNFEIYSMNADGSSPTR
                     LTNNPAADGFPAWSPDGTRIAFVSGNLEAPGTFEIFVMNANGTNRTQLTNDNLVDGVP
                     AWSPDSSAIVFMSGT"
     gene            complement(791..>1230)
                     /locus_tag="VIJ87_21995"
     CDS             complement(791..>1230)
                     /locus_tag="VIJ87_21995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY5447086.1"
                     /translation="LEDNKQAYALDLVQSPEFVAAYPDSMSGDQFITKLDTNAGGVLS
                     PAEKVNLLGILVGVPGVPGRALVVRQVAEDSDLKNAEFNKAFVLMQYFGYMRRNPNDA
                     PDTNFDGFNFWLDKLNQFNGNFVDAEMVKAFIISGEYRQRFGP"
BASE COUNT          309 a          319 c          309 g          293 t
ORIGIN      
        1 gttccactca tgaaaacaat tgccgagcta tcaggcgacc aggctggaac accatccact
       61 aggttgtcat tcgtcaactg ggttctattg gtcccattgg cgttcataac aaagatctca
      121 aaggtgcctg gagcttcgag attgccactg acaaacgcga tacgagtgcc gtccggtgac
      181 caagccggga acccatcggc cgctgggttg ttggttagtc tggttggtga actgccgtcc
      241 gcattcatcg aatagatttc gaagttgccg tctctcccac tcatgaagac gatcttggat
      301 ccatcgggtg accacttcgg ctgatcgtcg taaccaaggt gcgtggttag tctcgtttcg
      361 ttgctaccat cgaagtccat tacgaagatg tcgtggttgc catctaccac gcgtccaaaa
      421 acgattttcg gacctgccac gacagcggcg tgcttcagtg ttgcgttatt cagaggctgg
      481 agattttgtc cgacgcacga cggaacaaaa ctctgtctcg acattgtcgg gatgcttgtg
      541 aacatcagca tcagaagaac tgcggaacaa acaagagatc tccggcggga agtagaatgt
      601 ggcatgcagc aaagcctttc atgcaacagc ggtcgtttaa tagaaaacgc gagggatgtg
      661 ttgggaggaa tgcagtatca gtctcgactt ggagattgta aagacccaca gacagagcgg
      721 ccctgggggt gacgcgccaa tctctaagca cacgcccgtt tcgagagact ttaatgcact
      781 accggttccg tcacggacca aaacgctggc gatactcacc tgaaataatg aacgccttca
      841 ccatctcagc atccacaaag ttgccattaa actgattcaa cttgtcgagc cagaagttga
      901 aaccatcgaa gtttgtatca ggtgcgtcgt ttggatttct gcgcatgtag ccgaagtatt
      961 gcatcaggac gaacgctttg ttgaattcgg cattcttcaa atcagaatcc tcagcaactt
     1021 gacgcacgac cagtgctcga cccggaacgc ctggtacgcc aacaagtatc ccgagcagat
     1081 tgaccttttc ggcaggtgac aacacacctc ccgcatttgt atccaacttg gtgatgaatt
     1141 gatcgccaga cattgaatcc ggataggccg caacaaactc cgggctctgc acaaggtcca
     1201 atgcgtacgc ttgtttgttg tcctcaagct
//
